LOCUS       DAJVUP010000001       102428 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.001, whole genome shotgun sequence.
ACCESSION   DAJVUP010000001 DAJVUP010000000
VERSION     DAJVUP010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 102428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 102428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..102428
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.001"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..530)
                     /gene="yeeE"
                     /locus_tag="OQQ75_000001"
                     /pseudo
     CDS             complement(1..530)
                     /gene="yeeE"
                     /locus_tag="OQQ75_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416517.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transport protein YeeE"
     gene            complement(709..2067)
                     /gene="plaP"
                     /locus_tag="OQQ75_000002"
     CDS             complement(709..2067)
                     /gene="plaP"
                     /locus_tag="OQQ75_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PlaP"
                     /protein_id="HCS1974475.1"
                     /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS
                     GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS
                     LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV
                     VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD
                     GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI
                     MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR
                     TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK
                     DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED
                     VA"
     gene            complement(2057..2119)
                     /gene="yoeI"
                     /locus_tag="OQQ75_000003"
     CDS             complement(2057..2119)
                     /gene="yoeI"
                     /locus_tag="OQQ75_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YoeI"
                     /protein_id="HCS1974476.1"
                     /translation="MGQFFAYATVITVKENDHVA"
     gene            complement(2334..3263)
                     /locus_tag="OQQ75_000004"
     CDS             complement(2334..3263)
                     /locus_tag="OQQ75_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1974477.1"
                     /translation="MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESD
                     LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT
                     FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG
                     FSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE
                     AITVFDFKTKLELQISGLGCGYLPRYLAQHFLDSGALIEKKVVAQTLFEPVWIGWNEQ
                     TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI"
     gene            complement(3309..4133)
                     /locus_tag="OQQ75_000005"
     CDS             complement(3309..4133)
                     /locus_tag="OQQ75_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1974478.1"
                     /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG
                     IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAH
                     RIPRIIFTSSTSVYGDAQGMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA
                     GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP
                     ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE"
     gene            complement(4216..4470)
                     /gene="yoeB"
                     /locus_tag="OQQ75_000006"
                     /pseudo
     CDS             complement(4216..4470)
                     /gene="yoeB"
                     /locus_tag="OQQ75_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707909.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin YoeB"
     gene            complement(4467..4718)
                     /gene="yefM"
                     /locus_tag="OQQ75_000007"
     CDS             complement(4467..4718)
                     /gene="yefM"
                     /locus_tag="OQQ75_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoeB-YefM toxin-antitoxin system antitoxin YefM"
                     /protein_id="HCS1974479.1"
                     /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE
                     YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE"
     gene            5001..5051
                     /gene="hisL"
                     /locus_tag="OQQ75_000008"
     CDS             5001..5051
                     /gene="hisL"
                     /locus_tag="OQQ75_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="his operon leader peptide"
                     /protein_id="HCS1974480.1"
                     /translation="MTRVQFKHHHHHHHPD"
     misc_feature    5027..5150
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            5197..6096
                     /gene="hisG"
                     /locus_tag="OQQ75_000009"
     CDS             5197..6096
                     /gene="hisG"
                     /locus_tag="OQQ75_000009"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HCS1974481.1"
                     /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE
                     NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG
                     GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR
                     AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ
                     GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE
                     TMEKLKALGASSILVLPIEKMME"
     gene            6102..7406
                     /gene="hisD"
                     /locus_tag="OQQ75_000010"
     CDS             6102..7406
                     /gene="hisD"
                     /locus_tag="OQQ75_000010"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HCS1974482.1"
                     /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK
                     ARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQ
                     KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLC
                     SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK
                     RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAAD
                     MARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN
                     ARDLVDGITSAGSVFLGDWSLESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV
                     QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA"
     gene            7403..8473
                     /gene="hisC"
                     /locus_tag="OQQ75_000011"
     CDS             7403..8473
                     /gene="hisC"
                     /locus_tag="OQQ75_000011"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HCS1974483.1"
                     /translation="MSIVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE
                     FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDA
                     ILYCPPTYGMYGVSAETIGVECRTVPTLDNWQLDLQGISDKLEGVKVVYVCSPNNPTG
                     QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL
                     AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER
                     ECLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL
                     RITVGTREESQRVIDALRAEQV"
     gene            8473..9540
                     /gene="hisB"
                     /locus_tag="OQQ75_000012"
     CDS             8473..9540
                     /gene="hisB"
                     /locus_tag="OQQ75_000012"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416526.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HCS1974484.1"
                     /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQ
                     KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD
                     CRKPKVKLVERYLAEQAIDRANSYVIGDRATDIQLAENMGITGLRYDRETLNWPMIGE
                     QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEI
                     NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR
                     PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG
                     RTLRQAIRVEGDTLPSSKGVL"
     gene            9540..10130
                     /gene="hisH"
                     /locus_tag="OQQ75_000013"
     CDS             9540..10130
                     /gene="hisH"
                     /locus_tag="OQQ75_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HCS1974485.1"
                     /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL
                     PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED
                     VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG
                     EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM"
     gene            10130..10867
                     /gene="hisA"
                     /locus_tag="OQQ75_000014"
     CDS             10130..10867
                     /gene="hisA"
                     /locus_tag="OQQ75_000014"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HCS1974486.1"
                     /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYATQGAE
                     VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG
                     STAVKSPEMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY
                     LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTG
                     VRGVIVGRALLEGKFTVKEAIACWQNA"
     gene            10849..11625
                     /gene="hisF"
                     /locus_tag="OQQ75_000015"
     CDS             10849..11625
                     /gene="hisF"
                     /locus_tag="OQQ75_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HCS1974487.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA
                     DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISI
                     NSPALADPTLITRLADRFGVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETL
                     DWVQEVQKRGAGEVVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE
                     AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC"
     gene            11619..12230
                     /locus_tag="OQQ75_000016"
     CDS             11619..12230
                     /locus_tag="OQQ75_000016"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HCS1974488.1"
                     /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDK
                     TIESGKVAFFSRTKQRLWTKGETSGNFLNVVSIAPDCDNDTLLLLVNPIGPTCHKGTS
                     SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA
                     ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLRKRHQ"
     gene            complement(12327..13304)
                     /gene="wzzB"
                     /locus_tag="OQQ75_000017"
     CDS             complement(12327..13304)
                     /gene="wzzB"
                     /locus_tag="OQQ75_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310855.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HCS1974489.1"
                     /translation="MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIAL
                     AIGYLAVAKEKWTSTAIVTQPDVGQIAGYTNAMNVIYGSAVPKVSDIQASLIGRYSTA
                     FSALAETLDNQEEAEKLTIEPTVKNQSLPLAVSYVGETPEGAQKQLAKYIQQVDDQVN
                     EELGKDLKDNIALRMKNLQDSLKTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQVQ
                     QTEDVTQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIDNLDVDKLDIHA
                     YRYVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK"
     gene            complement(13451..13543)
                     /locus_tag="OQQ75_000018"
                     /pseudo
     CDS             complement(13451..13543)
                     /locus_tag="OQQ75_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416532.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
     gene            13713..14717
                     /locus_tag="OQQ75_000019"
     CDS             13713..14717
                     /locus_tag="OQQ75_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010432020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HCS1974490.1"
                     /translation="MKFLVTGAAGFIGFYLSKRLLAAGHQVVGIDNLNDYYDVNLKQA
                     RLDLLKHDNFSFYKIDLADREKMAALFADERFERVINLAAQAGVRYSLENPNAYADAN
                     LIGFLNILEGCRHNNVQHLLYASSSSVYGMNRKMPFSTDDSVDHPVSLYAATKKANEL
                     MAHTYSHLYGLPTTGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNFGKMKRDFT
                     YIDDIAEAIIRLQDVIPEKNPQWAVETGSPATSSAPYRVYNIGNSSPVELMDYINALE
                     EALGIEANKNMMPLQPGDVLETSADTKALYDVIGFKPETSVKEGVKNFVEWYRNFYKV
                     "
     gene            complement(14783..15949)
                     /gene="ugd"
                     /locus_tag="OQQ75_000020"
     CDS             complement(14783..15949)
                     /gene="ugd"
                     /locus_tag="OQQ75_000020"
                     /EC_number="1.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HCS1974491.1"
                     /translation="MKITISGTGYVGLSNGILIAQNHEVVALDIVQAKVDMLNKRQSP
                     LVDKEIEEYLATKDLNFRATTDKYDAYKNADYVIIATPTDYDPKTNYFNTSSVEAVIR
                     DVTEINPNAVMIIKSTIPVGFTESIKERFGIENVIFSPEFLREGKALYDNLHPSRIVI
                     GEQSERAKRFAALLQEGAIKQDIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA
                     ESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAI
                     VDANRTRKDFIADSILARKPKVVGVYRLIMKNGSDNFRASSIQGIMKRIKAKGVPVIV
                     YEPAMKEDDFFRSRVVRDLDAFKQEADVIISNRMSADLADVADKVYTRDLFGND"
     gene            complement(16198..17604)
                     /gene="gndA"
                     /locus_tag="OQQ75_000021"
     CDS             complement(16198..17604)
                     /gene="gndA"
                     /locus_tag="OQQ75_000021"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HCS1974492.1"
                     /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA
                     ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN
                     TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA
                     AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQT
                     FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP
                     LSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYA
                     QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY
                     FKQIADDYQQALRDVVAYAVQNGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGA
                     HTYKRIDKEGVFHTEWLD"
     gene            complement(17732..18787)
                     /locus_tag="OQQ75_000022"
     CDS             complement(17732..18787)
                     /locus_tag="OQQ75_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HCS1974493.1"
                     /translation="MSNTAIIGTVGVPASYGGFETLVENLIETEKVNYIVYCSSKNYP
                     KKLSTYKNAKLVYIPLSANGISSVIYDAFSILHAIVFRKVNTLLILGVSGCFILPIIK
                     KISSVKIITNIDGVEWRRDKWGRFAKKFLKWSEKIAVKNSNIVISDNKEIANYVCSEY
                     MVNSQVIAYGGDHSLVFETKRCNDVENSESKYALALCRIEPENNVHVILESFSKVTKK
                     LKFIGNWGSSDYGRSLKKKYSKYNNIEIIDPIYDVEQLNIIRSGCEFYVHGHSAGGTN
                     PSLVEMMFFAKPIICFDCKYNRYTTFEQACYFRDLKDLIIKIESPKERTQGVKLKSLA
                     EKHYTWNRIREQYEQLL"
     gene            complement(18780..20072)
                     /gene="wzy"
                     /locus_tag="OQQ75_000023"
     CDS             complement(18780..20072)
                     /gene="wzy"
                     /locus_tag="OQQ75_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060634342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O53 family O-antigen polymerase"
                     /protein_id="HCS1974494.1"
                     /translation="MLAWAPKLLLLFFLLSGLIKAISLYININLNYVFIPLLILASLF
                     YLLINRTIKMKAQGACFIFFFSISAILFLVNNIVVNNVYTQLQLMLAVTIQYIFPIII
                     ICLAGSGKLKLDIFDSLINIITKLTFLSLLIFGLCVMYDSKMVEEFYSQLYNHGLIIN
                     PFQTSEEGITLRFSGIFSSGFILASYCCFAIIYYYFNKSVNRIKFAFLFVGFVIMVVL
                     TYNRNGMLAFAVTSLFIMIHTYLRRYYLTLANLYYVFLIGILFIAPSFILYFGGDIQN
                     SYSSIDYSAFTKLSTLFSRIDAWLQVLNINDVSRLLFGSGLVQGLGEDDMNFYVDNGY
                     LYLLHQSGLIALVLYIATWSYMFISLSKNLKKRRNHNFVSVDEINICLLLILVSFTLA
                     LLNNLFFEPVFLILVLMKCVTVNNKSSSIYEKNEQTYE"
     gene            complement(20076..21170)
                     /locus_tag="OQQ75_000024"
     CDS             complement(20076..21170)
                     /locus_tag="OQQ75_000024"
                     /inference="COORDINATES: protein motif:HMM:NF025072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1974495.1"
                     /translation="MKKIAILLPGPRREPVGGYKVLYQYGNYLASVGWQIDFIYLTNR
                     IVCYNRFSGLVGKIKAKLFSLLKFYKWFDFTSSNINHYVIKSLKKRDIENFNIVICSS
                     VETFIYANSSCRVNHKKLVYFVQDYENWNIPENILNYTLSHKDVDYITISDDLVKKIT
                     KMGGDVSLTLYNGINKNDFFVNIPWNERDRASFLFLYHPSERKGCDLLLRAIQKIHEV
                     DSSIKFSCFSAYTKPENFPSFIHYVYQPTVKQLNNLYNENRYFICSSIYEGFGLTAAE
                     ASFSGAIVVTTRNGGVEQFIKNEVTGFVLKERTLNSFMVAIMKLSQKDEELNLFAIES
                     SKKVRIQLDLDINFKKIDSYFKARYNNKRN"
     gene            complement(21171..22400)
                     /gene="wzx"
                     /locus_tag="OQQ75_000025"
     CDS             complement(21171..22400)
                     /gene="wzx"
                     /locus_tag="OQQ75_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060634343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O53 family O-antigen flippase"
                     /protein_id="HCS1974496.1"
                     /translation="MVKKIVNQFIYQFGNYILPFLIIPFLINKLSIAVYKDFVVIQSL
                     VLFFAVLINYGLDLFGVRYISNNVKHLRKCKSFLYISILSRLCIFIFCSFFLLVSLMA
                     LTKPDLLYWLLCFFWMLSFVFQSNWYLQGCGDFKLITFYGLLPKLIVYPFVFILVNND
                     NDAWVYLFLCAIANYASNILMMIHIRRKLNVVAFKRTNLLRNVWIFLVKGWYIFLSQA
                     SVTLISYANIFFLPLVLEPKSFVVFSTAERIVKVLSITTTPILNVIFPHISSLIENNK
                     QRVFIMISRISLFSLIVFLLCYTLYVFIGYYLIQLIFPTISQELYSVLLLLLFNVFFV
                     FQNNLFGTQIGLNYGKDKSFTKIIAINGILNIIAMPVFSKLYHLHGTILTSLCIQLSI
                     LICMYMLAKKCGYKFKV"
     gene            complement(22381..23493)
                     /locus_tag="OQQ75_000026"
     CDS             complement(22381..23493)
                     /locus_tag="OQQ75_000026"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HCS1974497.1"
                     /translation="MKFIIIGYRDAYFWNEYGTSVRDLQIAEILSRKYHVTFINRPVS
                     IYERLKNKKKAKSEYKAYSNRITFIDHTSYDLIGPLFGRIWTKYCYKKILNRISSLFT
                     DDSIIIDFTPIAELEFKNNKRITYWYDLIDNFSIHNRFSEKEKKAVRDKYAYVDENAD
                     IITAVSDKAIKNFLNPNKYVMPNGVYLENQNHECFIDGTPNKVYQLGFVGFVTDKLDI
                     DFLNKLSKKFSIIIWGKFFDDSIRDKLNENIKIAGAFKYSDLPSIMKSFKVGLLPYLP
                     EKSHDESPLKMYEYFKYGIPCLSSMNFEIKSRWFVNYLEYSKRDLLYEKINELIVSNN
                     SESIKASIQKEWLFEIKVNKIIEDIIRRKECGKKNS"
     gene            complement(23490..24332)
                     /locus_tag="OQQ75_000027"
     CDS             complement(23490..24332)
                     /locus_tag="OQQ75_000027"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974498.1"
                     /translation="MENTNYYKLAILIVLYGKEVEQCETFTHIDRVLKKNRMSKDDII
                     LCLWNNGPREIAFNLTTDYYTLKVCQTINNESLSYIYNLFINEVESEKYILLDHDSIL
                     KYDYVLECLNSTSDCIIPNIIVGNNIQSPKTYSIQSFNKGNTVLAIGSGICISKKLCE
                     KLRQVFGDVFDSRFYFYGVDSTFFLRLNKIGESEFIKISECVVLHSLSRLENEAIKVK
                     QFRIKERSYDQGLTLRYYFCKFTFFTVAKKLLAKLIFNKSDISLIYFAKAYFSGKHYK
                     SGKS"
     gene            complement(24319..24888)
                     /gene="rfbC"
                     /locus_tag="OQQ75_000028"
     CDS             complement(24319..24888)
                     /gene="rfbC"
                     /locus_tag="OQQ75_000028"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HCS1974499.1"
                     /translation="MNVIKTEISDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVE
                     FVQDNHSKSSKGVLRGLHYQLEPYAQGKLVRCAVGEVFDVAVDIRKSSPTFGKWVGVN
                     LSAENKRQLWIPEGLAHGFLVLSETAEFLYKTTNYYHPESDRGIIWDDPDIDVKWPLS
                     IHKPILSIKDEKQKMFKEMIALEKWNGEY"
     gene            complement(24893..25771)
                     /gene="rfbA"
                     /locus_tag="OQQ75_000029"
     CDS             complement(24893..25771)
                     /gene="rfbA"
                     /locus_tag="OQQ75_000029"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS1974500.1"
                     /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL
                     MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPTPDGLAQAFIIGEEFIGG
                     DDCALVLGDNIFYGHDLPKLMDVAVNKESGATVFAYHVNDPERYGVVEFDKNGTAISL
                     EEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSSRGELEITDINRIYMEQGRLSVAMM
                     GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAYRKGFIAAEQVKVLAEPL
                     KKNAYGQYLLKMIKGY"
     gene            complement(25829..26728)
                     /gene="rfbD"
                     /locus_tag="OQQ75_000030"
     CDS             complement(25829..26728)
                     /gene="rfbD"
                     /locus_tag="OQQ75_000030"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HCS1974501.1"
                     /translation="MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNSE
                     GVAETVKKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVIHY
                     STDYVFPGTGEIPWQEADATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN
                     NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAS
                     GTTTWHDYAALVFEEARKAGIPLALNKLNAVPTTAYPTPARRPHNSRLDTEKFQQNFA
                     LVLPDWQIGVKRMLNELFTTTAI"
     gene            complement(26728..27813)
                     /gene="rfbB"
                     /locus_tag="OQQ75_000031"
     CDS             complement(26728..27813)
                     /gene="rfbB"
                     /locus_tag="OQQ75_000031"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1974502.1"
                     /translation="MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA
                     DVSDSERYVFEHADICDAAVMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIV
                     GTYVLLEAARNYWSALDSDKKNSFRLHHISTDEVYGDLPHPDEVNNTEELPLFTETTA
                     YAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG
                     KALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDL
                     LDEIVPKEKSYREQITYIADRPGHDRRYAIDAEKIGRELGWKPQETFESGIRKTVEWY
                     LSNTKWVDNVKSGAYQSWIEENYEGRQ"
     gene            complement(28186..29079)
                     /gene="galF"
                     /locus_tag="OQQ75_000032"
     CDS             complement(28186..29079)
                     /gene="galF"
                     /locus_tag="OQQ75_000032"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalF"
                     /protein_id="HCS1974503.1"
                     /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI
                     VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV
                     RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS
                     QVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS
                     ADIWPELEHTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY
                     GLRNLKEGAKFRKGIEKLLSE"
     gene            complement(29254..30648)
                     /gene="wcaM"
                     /locus_tag="OQQ75_000033"
     CDS             complement(29254..30648)
                     /gene="wcaM"
                     /locus_tag="OQQ75_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis protein WcaM"
                     /protein_id="HCS1974504.1"
                     /translation="MPFKKISRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHD
                     WIASFKQAFSEGQTVVVPAGFVCDNINTGIFIPPGKTLHILGSLRGNGRGRFVLQDGS
                     QVTGEEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTV
                     SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCT
                     NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIK
                     ARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF
                     RVNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELYNKPQHLFMRNINV
                     MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNEKGQSSVDIDRVNHHIV
                     NVEKINFRLPERRE"
     gene            complement(30659..31879)
                     /gene="wcaL"
                     /locus_tag="OQQ75_000034"
     CDS             complement(30659..31879)
                     /gene="wcaL"
                     /locus_tag="OQQ75_000034"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaL"
                     /protein_id="HCS1974505.1"
                     /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQN
                     THAAWTKYNLAARTSWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESR
                     NLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREV
                     LNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA
                     PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ
                     LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST
                     LHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLNTDELAPVVKRAREKVEHDFNQ
                     QVINRELASLLQAL"
     gene            complement(31876..33156)
                     /gene="wcaK"
                     /locus_tag="OQQ75_000035"
     CDS             complement(31876..33156)
                     /gene="wcaK"
                     /locus_tag="OQQ75_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis pyruvyl transferase
                     WcaK"
                     /protein_id="HCS1974506.1"
                     /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPV
                     SSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNI
                     AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP
                     FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDF
                     TASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQV
                     IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGT
                     RLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ
                     LPALNARLSEAVSRERQTGMQMVQSVLERIGEVK"
     gene            complement(33528..35006)
                     /gene="wzxC"
                     /locus_tag="OQQ75_000036"
     CDS             complement(33528..35006)
                     /gene="wzxC"
                     /locus_tag="OQQ75_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid undecaprenyl disphosphate flippase
                     WzxC"
                     /protein_id="HCS1974507.1"
                     /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL
                     TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGLVVCVAVFLLSDLI
                     GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV
                     VSAHFWPLAMIAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLVSVAPNLRFGAWLTA
                     DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ
                     DDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCIVG
                     LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI
                     INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYVLGIVLKGQLALGMLLG
                     VQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG"
     gene            complement(35008..36387)
                     /gene="wcaJ"
                     /locus_tag="OQQ75_000037"
     CDS             complement(35008..36387)
                     /gene="wcaJ"
                     /locus_tag="OQQ75_000037"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HCS1974508.1"
                     /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF
                     LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFN
                     NDFDTQLKIWLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRN
                     QPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKL
                     VHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVL
                     ATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVV
                     TQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEG
                     YMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVF
                     KGFVNKAAY"
     gene            complement(36442..37812)
                     /gene="cpsG"
                     /locus_tag="OQQ75_000038"
                     /gene_synonym="manB"
     CDS             complement(36442..37812)
                     /gene="cpsG"
                     /locus_tag="OQQ75_000038"
                     /gene_synonym="manB"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis phosphomannomutase
                     CpsG"
                     /protein_id="HCS1974509.1"
                     /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG
                     GDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF
                     GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKTLGAPVELIKVHNTPDGNFPNGIP
                     NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE
                     KNPGAKIIHDPRLSWNTIDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY
                     FRDFAYCDSGMIPWLLVAELLCLKGKTLGELVRDRMAAFPASGEINSKLAQPVEAINR
                     VEQHFSREALAVDRTDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTL
                     LTLLNE"
     gene            complement(38005..39441)
                     /gene="cpsB"
                     /locus_tag="OQQ75_000039"
     CDS             complement(38005..39441)
                     /gene="cpsB"
                     /locus_tag="OQQ75_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HCS1974510.1"
                     /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT
                     ICRLKGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAA
                     TRHSPESDPLMLVLAADHVIADEDAFRAAVRNAIPYAEAGKLVTFGIVPDLPEIGYGY
                     IRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELK
                     KYRPDILDACEKAMSAVDPDLDFIRVDEEAFLPCPEESVDYAVMERTADAVVVPMDAG
                     WSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTK
                     DAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITV
                     KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKI
                     PLDLIEVRSGSYLEEDDVVRFADRYGRV"
     gene            complement(39444..40667)
                     /gene="wcaI"
                     /locus_tag="OQQ75_000040"
     CDS             complement(39444..40667)
                     /gene="wcaI"
                     /locus_tag="OQQ75_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis fucosyltransferase
                     WcaI"
                     /protein_id="HCS1974511.1"
                     /translation="MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYY
                     PQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR
                     RWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA
                     QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADVDV
                     DALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLE
                     KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN
                     AVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL
                     DKENVLRQFINDIRG"
     gene            complement(40664..41143)
                     /gene="gmm"
                     /locus_tag="OQQ75_000041"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
     CDS             complement(40664..41143)
                     /gene="gmm"
                     /locus_tag="OQQ75_000041"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose mannosyl hydrolase"
                     /protein_id="HCS1974512.1"
                     /translation="MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGY
                     WFVPGGRVQKDEMLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY
                     VVLGFRFRVAEEDLLLPDEQHDDYRWLTPDALLASNDVHANSRAYFLAEKRAGVPGL"
     gene            complement(41146..42111)
                     /gene="fcl"
                     /locus_tag="OQQ75_000042"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
     CDS             complement(41146..42111)
                     /gene="fcl"
                     /locus_tag="OQQ75_000042"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
                     /EC_number="1.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HCS1974513.1"
                     /translation="MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDS
                     RAVHDFFASESIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL
                     LFLGSSCIYPKLAKQPMAGSELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS
                     VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA
                     AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK
                     PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG"
     gene            complement(42114..43235)
                     /gene="gmd"
                     /locus_tag="OQQ75_000043"
     CDS             complement(42114..43235)
                     /gene="gmd"
                     /locus_tag="OQQ75_000043"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HCS1974514.1"
                     /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV
                     DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT
                     ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
                     KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL
                     GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF
                     EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK
                     PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES"
     gene            complement(43261..43809)
                     /gene="wcaF"
                     /locus_tag="OQQ75_000044"
     CDS             complement(43261..43809)
                     /gene="wcaF"
                     /locus_tag="OQQ75_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaF"
                     /protein_id="HCS1974515.1"
                     /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA
                     FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ
                     KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKS
                     LPANVVCRGNPAVVIRERVETE"
     gene            complement(43825..44571)
                     /gene="wcaE"
                     /locus_tag="OQQ75_000045"
     CDS             complement(43825..44571)
                     /gene="wcaE"
                     /locus_tag="OQQ75_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaE"
                     /protein_id="HCS1974516.1"
                     /translation="MLLSIITVAFRNLEGIVKTHASLAHLAQVEDISFEWIVVDGGSN
                     DGTREYLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQNAANF
                     VRKLKMQKDNVMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKW
                     RYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQ
                     ILHVPGFWAELSWHLRQRTTSKTKALYNKV"
     gene            complement(44582..45799)
                     /gene="wcaD"
                     /locus_tag="OQQ75_000046"
     CDS             complement(44582..45799)
                     /gene="wcaD"
                     /locus_tag="OQQ75_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid polymerase WcaD"
                     /protein_id="HCS1974517.1"
                     /translation="MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLL
                     LFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIR
                     FKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL
                     NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGV
                     MTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGS
                     SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY
                     FSWFAVFLSLWYMGKVIKMMINAFGDNHNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV
                     CPFILRKALNITR"
     gene            complement(45774..46991)
                     /gene="wcaC"
                     /locus_tag="OQQ75_000047"
     CDS             complement(45774..46991)
                     /gene="wcaC"
                     /locus_tag="OQQ75_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaC"
                     /protein_id="HCS1974518.1"
                     /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK
                     ESVSHQNYPQVIKHTPRMTAMANIVLFRLFNRDLFGNFNELYRTITRTPGPVVLHFHV
                     LHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP
                     TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN
                     NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHT
                     FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI
                     ATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ
                     QMLEEYVNFYQNL"
     gene            complement(46988..47476)
                     /gene="wcaB"
                     /locus_tag="OQQ75_000048"
     CDS             complement(46988..47476)
                     /gene="wcaB"
                     /locus_tag="OQQ75_000048"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaB"
                     /protein_id="HCS1974519.1"
                     /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNIWAAPL
                     LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG
                     ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV
                     IK"
     gene            complement(47479..48318)
                     /gene="wcaA"
                     /locus_tag="OQQ75_000049"
     CDS             complement(47479..48318)
                     /gene="wcaA"
                     /locus_tag="OQQ75_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaA"
                     /protein_id="HCS1974520.1"
                     /translation="MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS
                     TSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNR
                     LSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQV
                     FTWAWRFKECLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSP
                     KKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGI
                     RGR"
     gene            complement(48496..50658)
                     /gene="wzc"
                     /locus_tag="OQQ75_000050"
                     /pseudo
     CDS             complement(48496..50658)
                     /gene="wzc"
                     /locus_tag="OQQ75_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416564.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase Wzc"
     gene            complement(50661..51104)
                     /gene="wzb"
                     /locus_tag="OQQ75_000051"
     CDS             complement(50661..51104)
                     /gene="wzb"
                     /locus_tag="OQQ75_000051"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase Wzb"
                     /protein_id="HCS1974521.1"
                     /translation="MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKG
                     ADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVM
                     LFGHWDNECEIPDPYRKSWETFAAVYTLLERSARQWAQALNAEQV"
     gene            complement(51110..52249)
                     /gene="wza"
                     /locus_tag="OQQ75_000052"
     CDS             complement(51110..52249)
                     /gene="wza"
                     /locus_tag="OQQ75_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein Wza"
                     /protein_id="HCS1974522.1"
                     /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF
                     DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE
                     LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ
                     VDVNIAAFRSQKTYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN
                     GREERISLQVLMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM
                     TLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEF
                     RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW"
     gene            52558..52707
                     /locus_tag="OQQ75_000053"
     CDS             52558..52707
                     /locus_tag="OQQ75_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974523.1"
                     /translation="MVIEYWLSNNAGGSVTANGIAGKVTIRQLAIFKNYIKCHSIWFL
                     GVSLG"
     gene            52908..54491
                     /locus_tag="OQQ75_000054"
     CDS             52908..54491
                     /locus_tag="OQQ75_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310895.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1974524.1"
                     /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD
                     RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT
                     MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA
                     VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI
                     GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVD
                     HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEDEIRQLLERNQHT
                     RLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR
                     NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG
                     HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR
                     VQKVQIIPLHKDGELEYEV"
     gene            complement(54765..56618)
                     /gene="asmA"
                     /locus_tag="OQQ75_000055"
     CDS             complement(54765..56618)
                     /gene="asmA"
                     /locus_tag="OQQ75_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane assembly protein AsmA"
                     /protein_id="HCS1974525.1"
                     /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRNYMVKQVAARSG
                     YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK
                     QVMLKGAVIQLTPQTEVVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ
                     HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA
                     AIEQINWQLQGADLPKQGIHGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTL
                     TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ
                     GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD
                     ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG
                     QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT
                     LNDMQGQSPVLALSGAGTLNLAEQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY
                     GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM"
     gene            complement(56640..57221)
                     /gene="dcd"
                     /locus_tag="OQQ75_000056"
     CDS             complement(56640..57221)
                     /gene="dcd"
                     /locus_tag="OQQ75_000056"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004942378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HCS1974526.1"
                     /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF
                     RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD
                     LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF
                     EPLSGPAARPYNRREDAKYRNQQGAVASRIDKD"
     gene            complement(57313..57954)
                     /gene="udk"
                     /locus_tag="OQQ75_000057"
     CDS             complement(57313..57954)
                     /gene="udk"
                     /locus_tag="OQQ75_000057"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002211872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HCS1974527.1"
                     /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI
                     PEDCYYKDQSHLSMEERVKTNYDHPSAMDHNLLLEHLQALKRGSAIDLPVYSYVEHTR
                     MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS
                     MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE"
     gene            58272..61569
                     /locus_tag="OQQ75_000058"
                     /pseudo
     CDS             58272..61569
                     /locus_tag="OQQ75_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            complement(61608..62465)
                     /gene="alkA"
                     /locus_tag="OQQ75_000059"
     CDS             complement(61608..62465)
                     /gene="alkA"
                     /locus_tag="OQQ75_000059"
                     /EC_number="3.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2"
                     /protein_id="HCS1974528.1"
                     /translation="MYTLNWQPPYDWSWMLGFLAARAVSGVETVADDYYARSLAVGEY
                     RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAAR
                     PGLRLPGCIDAFEQGVRAILGQLVSVAMAAKLTAKVVQLYGERLDDFPEYICFPTPQR
                     LAAADPQALKALGMPLKRAEALIHLANAALEGSLPMTIPGDVEQAMKTLQTFPGIGRW
                     TANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEG
                     WQPDGTDEL"
     gene            62599..63951
                     /gene="yegD"
                     /locus_tag="OQQ75_000060"
     CDS             62599..63951
                     /gene="yegD"
                     /locus_tag="OQQ75_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1974529.1"
                     /translation="MFIGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLCAPTRE
                     AVSEWLYRHHDVPADDDETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEE
                     VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINF
                     QGLGGDEANAQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGG
                     GTTDCSLLLMGPQWRSRLDREASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEK
                     GIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKVWRQRLS
                     YRLVRSAEESKIALSNAAETRASLPFISDELATLISQQGLESALSQPLARILEQVQLA
                     LDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGIPIAGGDDFGSVTAGLARWAEVVFR
                     "
     gene            complement(63963..65885)
                     /gene="yegI"
                     /locus_tag="OQQ75_000061"
     CDS             complement(63963..65885)
                     /gene="yegI"
                     /locus_tag="OQQ75_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310906.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YegI"
                     /protein_id="HCS1974530.1"
                     /translation="MKPTLYTATGECVTPGRELGKGGEGAVYDIEEFVDSVAKIYHTP
                     PPASKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYS
                     PAHRRQSYPHCAWDFLLYVARNIASSFATVHEHGHVVGDVNQNSFMVGRDSKVVLIDS
                     DSFQINVNGTLHLCEVGVSHFTPPELQTLSSFVGFERTENHDNFGLALLIFHVLFGGR
                     HPYSGVPLISDAGNALETDITHFRYAYASDNQRRGLKPPPRSIPLSMLPSDVEAMFQQ
                     AFTESGVATGRPTAKAWVAALDSLRQQLKKCPVSAMHVYPAHLTDCPWCTLDNQGVIY
                     FVDLGEEVITTSGDFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRREYI
                     ILIEIALSALSLLLCGLQAEPRYIILVPVLSAIWIIGSLTSKAYKAEIQQRREAFNRA
                     KMDYEHLVSQIQQLGGLEGFIAKRAMLEKMKDEILGLPEEEKRALAALYDTARERQKQ
                     KFLEGFFASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVIDWKASC
                     DRRFVFRPNEAVTPADRQAVMAAKRHRLESALTVGATELQRFRLYAPARTMPLMEPLR
                     QAAEKLAQAQADLSRC"
     gene            complement(65882..66643)
                     /gene="pphC"
                     /locus_tag="OQQ75_000062"
     CDS             complement(65882..66643)
                     /gene="pphC"
                     /locus_tag="OQQ75_000062"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase PphC"
                     /protein_id="HCS1974531.1"
                     /translation="MSWRLVYASAVGTSHISADLPCQDACQMQVVWLNDQQPLLVMFL
                     ADGAGSVSQGGEGATLAVNEAMAFMVQKVQDGELGLNDVLATNMVLTIRQRLFAEAEA
                     KALAVRDFACTFLGLISSPDGTLIMQIGDGGVVVDLGHGLQLPLTPMVGEYANMTHFI
                     TDEDAVSRLETFTSTGRAHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLASVTQE
                     QLDLLPELLKQFLSSPAVNERTDDDKTLALALWLP"
     gene            complement(66640..67299)
                     /locus_tag="OQQ75_000063"
     CDS             complement(66640..67299)
                     /locus_tag="OQQ75_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HCS1974532.1"
                     /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMSGRPINELNAGL
                     VTFRDELLADPLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK
                     ALDMVEERKREYRANGISYYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIG
                     VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS
                     V"
     gene            complement(67520..67579)
                     /gene="ibsA"
                     /locus_tag="OQQ75_000064"
     CDS             complement(67520..67579)
                     /gene="ibsA"
                     /locus_tag="OQQ75_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsA"
                     /protein_id="HCS1974533.1"
                     /translation="MMKHVIILVILLVISFQAY"
     gene            complement(67852..67908)
                     /locus_tag="OQQ75_000065"
     CDS             complement(67852..67908)
                     /locus_tag="OQQ75_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1974534.1"
                     /translation="MMKLLIIVVLLVISFPAY"
     gene            complement(68180..68236)
                     /locus_tag="OQQ75_000066"
     CDS             complement(68180..68236)
                     /locus_tag="OQQ75_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1974535.1"
                     /translation="MMKLLIIVVLLVISWPAY"
     gene            68515..69762
                     /gene="mdtA"
                     /locus_tag="OQQ75_000067"
     CDS             68515..69762
                     /gene="mdtA"
                     /locus_tag="OQQ75_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416578.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter subunit MdtA"
                     /protein_id="HCS1974536.1"
                     /translation="MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSRSAAPGATKQAQ
                     QSPAGGRRGMRSGPLAPVQAATAVEQAVPRYLTGLGTIIAANTVTVRSRVDGQLMALH
                     FQEGQQVKAGDLLAEIDPSQFKVALAQTQGQLAKDKATLANARRDLARYQQLAKTNLV
                     SRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQIS
                     SGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTL
                     LSLDNQIDATTGMIKVKARFNNQNDVLFPNQFVNARMLVDTEQNAVVIPTAALQMGNE
                     GHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVE
                     AQSATTPEEKATSREYAKKGARS"
     gene            69762..72884
                     /gene="mdtB"
                     /locus_tag="OQQ75_000068"
     CDS             69762..72884
                     /gene="mdtB"
                     /locus_tag="OQQ75_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtB"
                     /protein_id="HCS1974537.1"
                     /translation="MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVS
                     ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITL
                     QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM
                     TQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT
                     GANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAE
                     NSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTT
                     NIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS
                     INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLIFS
                     LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQN
                     RFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQD
                     NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQ
                     INLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQAT
                     SLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNA
                     LYSAFGQRLISTIYTQANQYRVVLEHNTEITPGLAALDTIRLTSSDGGVVPLSSIAKV
                     EQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGST
                     LAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALMIAGS
                     ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT
                     LAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYLLFDRLALWTK
                     SRFARHEEEA"
     gene            72885..75962
                     /gene="mdtC"
                     /locus_tag="OQQ75_000069"
     CDS             72885..75962
                     /gene="mdtC"
                     /locus_tag="OQQ75_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtC"
                     /protein_id="HCS1974538.1"
                     /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV
                     IMVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDIN
                     GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGKLYDFAST
                     QLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG
                     ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN
                     AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV
                     EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL
                     TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL
                     LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML
                     VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQA
                     DQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQ
                     QIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRK
                     KLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIY
                     QPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGL
                     SAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILI
                     IAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI
                     GIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSG
                     GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE"
     gene            75963..77379
                     /locus_tag="OQQ75_000070"
                     /pseudo
     CDS             75963..77379
                     /locus_tag="OQQ75_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416581.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            77376..78779
                     /gene="baeS"
                     /locus_tag="OQQ75_000071"
     CDS             77376..78779
                     /gene="baeS"
                     /locus_tag="OQQ75_000071"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     BaeS"
                     /protein_id="HCS1974539.1"
                     /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK
                     HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG
                     WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD
                     KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED
                     ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE
                     TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG
                     LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLKISAEQHDKTVRLTFAD
                     SAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG
                     VSITVELPLERDLQREV"
     gene            78776..79498
                     /gene="baeR"
                     /locus_tag="OQQ75_000072"
     CDS             78776..79498
                     /gene="baeR"
                     /locus_tag="OQQ75_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BaeR"
                     /protein_id="HCS1974540.1"
                     /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD
                     QVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI
                     GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD
                     LTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE
                     QSFIRAVYGVGYRWEADACRIV"
     gene            79689..80021
                     /locus_tag="OQQ75_000073"
     CDS             79689..80021
                     /locus_tag="OQQ75_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310915.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HCS1974541.1"
                     /translation="MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIA
                     SVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGT
                     SQTVKDNT"
     gene            80144..81544
                     /locus_tag="OQQ75_000074"
     CDS             80144..81544
                     /locus_tag="OQQ75_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000911981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HCS1974542.1"
                     /translation="MLKGLRTLFSRRVLFNVEMNNSVDCELLLIQQQLQALIAEPGNY
                     LAHDCDLNDTLVLCQLTHHHNGYIREKAVQYLGHKEDVAAIEELLLAANDWVKEVRLA
                     ATIALRHLMKDKNAAAFAVNLPMIRNLLQCQRYDHRAFVDEILRYLLTENNRPQLTYW
                     LTCPDKKLSRAVLQTLIEYGYFNDESSLLSILDKPDEGLRMLATTHWLRQQLPLSEAV
                     LTRLLKDRWPRIRQATLFSLTDRAIEMPPALHSTLLLDNNMLIRLRAKNMLHEVMDVP
                     QFWRHVVTSAEYTPSQRRAALYGLDSIHDPNILKLAEWGLSQNVFPLRLAAMHILAKA
                     NPRCGVKETILTTLANPDAAGLRFMVNICVWCRVPLTFEEIRQLQENAPSVKHACAYC
                     RLYHNLNKWDGLILLLQSQHKLTEEFAGKQLAIWQRNFNLSGIQPNALQRQQLQALFT
                     RNPELHNRLWGYIPFK"
     gene            81865..83226
                     /gene="yegQ"
                     /locus_tag="OQQ75_000075"
     CDS             81865..83226
                     /gene="yegQ"
                     /locus_tag="OQQ75_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HCS1974543.1"
                     /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN
                     HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM
                     LVREYFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDME
                     IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY
                     EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE
                     RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY
                     TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM
                     TPQGNINFTLEHMENAKGVAMPVAPGDGYTVWLPVPQDLELNYALLMRNFSGETTRNP
                     HGK"
     gene            complement(83556..83873)
                     /locus_tag="OQQ75_000076"
     CDS             complement(83556..83873)
                     /locus_tag="OQQ75_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974544.1"
                     /translation="MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDN
                     QYYTEAEASLARSRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFK
                     CGE"
     gene            84287..85185
                     /gene="yegS"
                     /locus_tag="OQQ75_000077"
                     /pseudo
     CDS             84287..85185
                     /gene="yegS"
                     /locus_tag="OQQ75_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
     gene            complement(85267..86040)
                     /locus_tag="OQQ75_000078"
     CDS             complement(85267..86040)
                     /locus_tag="OQQ75_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020238881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1974545.1"
                     /translation="MNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLE
                     QKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTVI
                     LDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHGS
                     IAERSLQDINADLMFVGADGIDAVNGITTFNEGYSVSGAMVTAANKVIAVLDSSKFNR
                     RGFNQVLPIEKIDIIITDDAVSEVDKLALQKTRVKLITV"
     gene            complement(86146..87186)
                     /gene="gatD"
                     /locus_tag="OQQ75_000079"
     CDS             complement(86146..87186)
                     /gene="gatD"
                     /locus_tag="OQQ75_000079"
                     /EC_number="1.1.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1974546.1"
                     /translation="MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPR
                     IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ
                     CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE
                     NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGSMQTFNSSEMSAP
                     QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI
                     LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFTQAVRDIA
                     RNAMPGKVLLIP"
     gene            complement(87234..88589)
                     /locus_tag="OQQ75_000080"
     CDS             complement(87234..88589)
                     /locus_tag="OQQ75_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HCS1974547.1"
                     /translation="MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIG
                     IGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPI
                     AILVNVAMLLTRMTRVVNVDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKL
                     GDWFARDTRNFFELEGIAIPHGTSAYMGPIAVLVDAIIEKIPGVNRIKFSADDIQRKF
                     GPFGEPVTVGFVMGLIIGILAGYDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK
                     QARSRLQAKFGGQEFLIGLDPALLLGHTAVVSVSLIFIPLTILIAVCVPGNQVLPFGD
                     LATIGFFVAMAVAVHRGNLFRTLISGVIIMSITLWIATQTIGLHTQLAANAGALKAGG
                     MVASMDQGGSPITWLLIQVFSPQNIPGFIIIGAIYLTGIFITWRRARGFIKQEKAVLA
                     E"
     gene            complement(88593..88877)
                     /gene="gatB"
                     /locus_tag="OQQ75_000081"
     CDS             complement(88593..88877)
                     /gene="gatB"
                     /locus_tag="OQQ75_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIB"
                     /protein_id="HCS1974548.1"
                     /translation="MKRKIIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCRVNEI
                     ETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEALQNKILTILQG"
     gene            complement(88908..89360)
                     /gene="gatA"
                     /locus_tag="OQQ75_000082"
     CDS             complement(88908..89360)
                     /gene="gatA"
                     /locus_tag="OQQ75_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIA"
                     /protein_id="HCS1974549.1"
                     /translation="MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIARE
                     AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVEVSLVIALI
                     VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE"
     gene            complement(89430..90632)
                     /gene="gatZ"
                     /locus_tag="OQQ75_000083"
     CDS             complement(89430..90632)
                     /gene="gatZ"
                     /locus_tag="OQQ75_000083"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatZ"
                     /protein_id="HCS1974550.1"
                     /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE
                     ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA
                     MEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQ
                     REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIVRGLTEALTRVIA
                     IVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA
                     ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF
                     NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQS
                     GELSAIPH"
     gene            complement(90661..91515)
                     /gene="gatY"
                     /locus_tag="OQQ75_000084"
     CDS             complement(90661..91515)
                     /gene="gatY"
                     /locus_tag="OQQ75_000084"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatY"
                     /protein_id="HCS1974551.1"
                     /translation="MHVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP
                     VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVM
                     IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADAFYTNPAQA
                     REFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDI
                     QQTIKLGICKINVATELKNAFSQALKNYLTEHPEATEPRDYLQSAKSAMRDVVSKVIA
                     DCGCEGRA"
     gene            complement(91823..92875)
                     /gene="fbaB"
                     /locus_tag="OQQ75_000085"
     CDS             complement(91823..92875)
                     /gene="fbaB"
                     /locus_tag="OQQ75_000085"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HCS1974552.1"
                     /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN
                     RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI
                     EAGCNCVVSTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG
                     AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA
                     DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL
                     ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL
                     INAVQDVYLDSKITIA"
     gene            93132..94409
                     /locus_tag="OQQ75_000086"
     CDS             93132..94409
                     /locus_tag="OQQ75_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1974553.1"
                     /translation="MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYA
                     CTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYS
                     LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQILGYADISPT
                     NIPLLITAGSSALLGVFAFFLPGTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCS
                     FPFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL
                     LGLVIAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR
                     TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAII
                     AVLFMIFFCESDNEITAIKVDDRDIALTQGEVK"
     gene            94406..95410
                     /locus_tag="OQQ75_000087"
     CDS             94406..95410
                     /locus_tag="OQQ75_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HCS1974554.1"
                     /translation="MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPG
                     PKENNAACYFNRAEFTDDTSMALCLADALLERKGKIDPDLIGRNILDWALRFDAFNKN
                     VLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALAS
                     SPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSITRHAQQKRTTTFSASLAAR
                     LEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCAN
                     LGGDTDTIGAMATAICGALHGINAIDPALKAELDAVNQLDFNRYATALAKYRQQREAV
                     "
     gene            95407..96372
                     /locus_tag="OQQ75_000088"
     CDS             95407..96372
                     /locus_tag="OQQ75_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1974555.1"
                     /translation="MSGARLHTLLPELTTRQSVMVVGAAVIDVIADAYALPWRGCDIE
                     LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAE
                     GDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGEL
                     LVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE
                     ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGGVL
                     AGLASGLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV"
     gene            complement(96346..97092)
                     /locus_tag="OQQ75_000089"
     CDS             complement(96346..97092)
                     /locus_tag="OQQ75_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1974556.1"
                     /translation="MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHG
                     NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFS
                     QQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESW
                     VPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVI
                     KQVALDQQQRPIEYSISHCRSDLYVFVCEE"
     gene            complement(97144..97962)
                     /locus_tag="OQQ75_000090"
     CDS             complement(97144..97962)
                     /locus_tag="OQQ75_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HCS1974557.1"
                     /translation="MQLRITSRKKLTSLLCALGLISIVAIYPRQKVNFFYSTAVQITD
                     YIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKAT
                     EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVAAPVQARLFLQTVDFSQGDFPAVL
                     DVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH
                     YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQAFVDGIKETP"
     gene            complement(98027..98827)
                     /gene="thiD"
                     /locus_tag="OQQ75_000091"
     CDS             complement(98027..98827)
                     /gene="thiD"
                     /locus_tag="OQQ75_000091"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HCS1974558.1"
                     /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ
                     NTRGVQSVYRIESDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQYV
                     VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE
                     QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA
                     LAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW"
     gene            complement(98824..99612)
                     /gene="thiM"
                     /locus_tag="OQQ75_000092"
     CDS             complement(98824..99612)
                     /gene="thiM"
                     /locus_tag="OQQ75_000092"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HCS1974559.1"
                     /translation="MQVDLQSSAQSAHALHLFHQHSPLVHCMTNDVVQTFTANTLLAL
                     GASPAMVIETEEASQFAAIASALLINVGTLTQLRAQSMCAAVEQAKSSQTPWTLDPVA
                     VGALDYRRRFCLELLPHKPTAIRGNASEIMALAGIANGGRGVDTTDAAANAIPAAQTL
                     ARETGAIVVVTGEMDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVVAACCALPGDTL
                     ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA"
     regulatory      complement(99647..99743)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(101324..101617)
                     /locus_tag="OQQ75_000093"
     CDS             complement(101324..101617)
                     /locus_tag="OQQ75_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000274322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974560.1"
                     /translation="MYGQDTTAGGNLKKDSPLGKLWDFLHSPDLPTNPDFAKPADKTG
                     WVSSYSNPTYVPPTPTITAPQLKVDMAGNPLMTPPAWLNQPLNVNVNVKVQDG"
     gene            complement(101581..>102428)
                     /locus_tag="OQQ75_000094"
     CDS             complement(101581..>102428)
                     /locus_tag="OQQ75_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005113789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail tape measure protein"
                     /protein_id="HCS1974561.1"
                     /translation="GAVGLFVKALNQMKGTTNLTEKDLFDLMQQGKLFSKDILPEVAK
                     QMKAAARNGGALDKAMKSNRASWQRLQTSMQNAMNIFFASGFGNELTSAFDAISAAVN
                     GSGGAFEMFGHIAGKIVEGATDAFTELHDTVILTFRIIEYYASKMGITGEQLKAWGEM
                     AAYAAGVAMFAGSIWKLGVAFKWLLTMLNPLTKLLGVMKGIAAIGGIEAATTGGSGGE
                     GKDKPNKPGRGPKVGKVGGAAALSGGPVGWSIAVGSVGGDYAWDKVMTLTTPCMDRTP
                     PPGAI"
BASE COUNT        25745 a        26265 c        24573 g        25845 t
ORIGIN      
        1 agttttggct tcttcaactc tttcatcacc acccagagcg ttatcaccag caaaacggca
       61 accaacggcc acacagacaa attaaaagtc tcagcaatag agttatgttc agtactgtag
      121 tgctgcaagg tttgatttaa accactggca tgtggagaac gcatcaccgc actcatcacc
      181 atataagtga aaagcgcgat ccaactgccg atcaatccct cacccgcgcg ataccaggtc
      241 ccggtggcac atccacccgc cagaacaatt cccagcccga agatataccc acctataaca
      301 gtaccaggcc acgggaacgc cccggcttcg taagtcagta ggcccgccta aattaacgca
      361 aaaaccccca cactttgtac cgaaattgca atcagcaagg cgtaaaacat gcgattattt
      421 ttcgcgatat acatatcgcg aaaaccacca gtcaggcaaa aacgcccacg ctgcatgaca
      481 aatcccagca gagcaccaca aattagcccg cttaatatca ttgaaaacat aaattaatta
      541 accagatgaa tgttaatgag gaaattattc atgactggtg gaatgcagac caataaccaa
      601 attctctaaa ttagaacaaa tggttcttaa tgaggatttc gataaaaaag aataaaaaaa
      661 ccggagccaa atattcattc gactccggtt gattattaga aaagatgatt atgctacgtc
      721 ttcgtactgc ggaaccgggt tacggaagct cttggtgacg caagccaggt aaatcagacc
      781 gatagcagcc cagatcagac ccagaaccat tgagctttct tccaggttaa cccacagcgc
      841 accaacggtc agcgcaccac acatcggcag gaacagatac tggaagtgat ctttcagcgt
      901 cttattacgc ttctcacgga tccagaactg cgagatgacc gacaggttaa cgaaggtgaa
      961 cgccaccagc gcaccaaagt taatcagcgc cgttgccatt accaggtcga agttgattgc
     1021 cagcagggca atcgcgccaa ccaggatgat gttcatcgcc ggagtacgcc atttcgggtg
     1081 tacataaccg aagaagcttt tcgggaatac gccgtcacga cccattacgt acatcagacg
     1141 cgctacgcct gcatgcgccg ccataccgga cgccagtacg gtaatggtgg agaagatcag
     1201 cgcgccaacc tggaacgctt tacccgcaac gtacagcatg atttcaggct gtgacgcatc
     1261 cggatcttta aagcgagaga tatccgggaa gtacagctgc aggaagtaag ttgcaaagat
     1321 gaagatcatg ccgccgatca gcgcggtcag gaaaatcgca cgcgggatca cgcgctctgc
     1381 atctttggtt tcttccgaca ggttgctgat gccgtcaaag ccggtaaagg agaagcacag
     1441 gattgtcgcc ccggtaatca tcgggataac atgcgcatcg ccagaccaga atggacgagt
     1501 gctcgccagc gtaccagcgc cttcaccttc aaatacgcca taaacaacca tgcccagaat
     1561 caccgcgatc agcaccacct gcaacacgac gattacagtg ttgaagttcg ctacggattt
     1621 cagactacgc aggttaaagg cggtcatgaa ggccaccaac gccaccacaa acatccacga
     1681 tgggatggaa ggcaccagag cttcaaaata gattttcgcc agcagaatgt tgatcatcgg
     1741 cgcgaacaga tagtcgagca gagaagacca acccaccata aagccgacag tcgggctaat
     1801 ggatttctgg gcgtaagtgt atgcagagcc agcagaagga tagcggcgaa ccagcttccc
     1861 gtagctcaga gccgtaaaca ggatcgcaat caatgcgaac gcataggctg tcggcacatg
     1921 accatccgtg aggcctgaaa cgataccaaa agtatcaaac agcgtcatcg gctgcatata
     1981 ggcaagaccc atcattacaa ccggaactaa cgtaagcgtt ttacgcaatt ccacgcgaga
     2041 ggtgtttgga gtaacgttat gcgacatggt cattctcctt tacggtgata accgtcgcgt
     2101 aagcaaaaaa ttgccccatt tttttggatt cctcagcgac aacaactgtc gatttttagt
     2161 aaatatctat ccggtacgaa gcccggcctc ttggtatgaa tgattggttt gaagcaaaaa
     2221 ataaccgacg ctgatgaaac gtcggttttt agtcattttt tgacagcggc gcattgtgcc
     2281 taaatggggg ggaaatgaca agagaatgag aggcttgtca taataatttt tctttaaatg
     2341 gctgattttc cgtcatcaga ttttgcataa acaccggcga tcgcactatt tgctaaaatt
     2401 tcatcccgcc accagccact ggcaagtcct gcggtctgtt cattccagcc aatccagacg
     2461 ggttcaaaga gagtttgggc gaccactttc ttctcgatta acgcgccact atcgagaaaa
     2521 tgttgcgcca gataacgggg taaatagccg cagccgaggc cgctaatttg cagctccagc
     2581 ttggttttaa aatcgaaaac ggtaatggct tcttgttcgt cgagaagttg tgaggccgta
     2641 gaagcgcctg cctgcgcagt atcccccacc acaatcgccc gatatcgctt aataatacga
     2701 cgatttaacg gctcttcttc cagggctaac ggatgatgag gcgcgaccgc aaagacttgt
     2761 tccagatcgc ccaaccgtga aaaaccaaac tcactggaag atggtggctc atgcatcgcg
     2821 ccaacaataa tatccgctcg cccctgagtc agggcatccc atgaaccacc cagtacgcca
     2881 ttgataaact tcaggcgcgt cacgctatga tgttgataaa aagcttcaat cagtggcgct
     2941 agcagagaaa aaggaaacgt gtcgtccacg ccaatcacca gctcgttttc ccagccttca
     3001 tgcagtttga tcgcctgctt ttccagttcc cgcacggtat gcagaacttc ccgccctttc
     3061 tctaataaca tttttccggt gcgggtgaat ttagcgcggt gaccgctacg atcaagcaat
     3121 tgaatattaa ggtcgctttc cagcttgtga acggtgtaac tcagagcgga cggcgtcttg
     3181 tagagtttgg ccgacgccgc cgcaaaactg ccttcttttt ctaaggcatc gaggatcatc
     3241 aacacatcca gcagtggttt catacacgcc cccttgcagt gtatgcggcg tcctgctggc
     3301 gtgatcgttt actccagcgg cattaccagc ggatcgggat actggtattc aaatcccagt
     3361 tcattacaaa tccgactgcc atcaataatc ttacctttgc cgctgtccag actatttctg
     3421 aactgcggag gttccagccc cagtaaacgg gccatctgcg gatagaaaac attacgcgca
     3481 gggtgagctg gcgcacatat attatagatg tgtccgcctt taggtgcctg taacaacaga
     3541 gtgatagcgc caataacatc ttctaaatgg actaaattaa caccatgttc accatcaggc
     3601 gcggtttttc cggcaaagaa gcgtccggga tgacgccccg gtccgaccag gcccgcaaga
     3661 cgcagaatat cgaccgaagt accgggtaaa ttgtgcagcc agtcttcgag ttcttctaat
     3721 actcgtccac tgttggttac cggattacgc ggggtagttt ctttcaccat gccttgcgca
     3781 tcgccataga cagatgttga gctggtaaaa ataattcggg gaatacgatg ggccagcgcg
     3841 ctatccacta actcttgtac cgcttgtaaa tagaactcat cgccggagcc gctacgacgt
     3901 gccggaagcg taatgaccag tgcatcggca tccatcaggg catccagatc gtcagaatcg
     3961 caaactaact caggctccat gcgaagcaga tagctatcaa tgccactcat tcgggccgct
     4021 tcgacaccat cttgtgtggt tttactcccg gtgacttgcc agcctcgcgc tgaaagtgac
     4081 atcgccagcg gcatgcctaa ccaccctaac ccgacaattg cgaccttttt catccgttat
     4141 ctcctgatac accttagatc tataaggcta cgctagcgta tcaaaactga caattcattc
     4201 tatgaatgaa tctgttcaat aatgataacg acatgctgca atgagcagtg aatcgtcggt
     4261 aaccgcgtat accagacggt gctcctctgt aatgcgtcgg gactagaaac ctgacaaatt
     4321 atgtttcagg ggttctggct tccccttacc ttcaaatggc gttctgcggg tatctttgat
     4381 aagttcattg atctttttaa caattcgctt atctgtttcc tgccagtaca gataatcatc
     4441 ccatgattcc tcagaccaga ttagtttcac tcaataatgt ccttttctgt tcctttgcct
     4501 gatttcaggc tatcgattga gtccatcaat ctccgggcgt tagcggggga acgcagtaga
     4561 taagccgtct cttccagcga gttgtattct tcgagtgaca tcagaacaca agcctctcca
     4621 ttctgacgag taataaggat cggggcatga tcttcaacgg ctttcatcat tgttgccgac
     4681 aaattctgac gcgcttcgct gtagctaatt gtacgcatgt caatctcctc ttttgtacag
     4741 ttcattgtac aatgatgggc gttaattaac tatttattaa ttagtttgta gatcaaggta
     4801 ttgtcagtga gacgaaaatc caggcttcgc tatttttggt gccgtcagct tagaggacag
     4861 tcctcttagc cccctccttt ccccgctcat tcattaaaca aatccatcgc catagaatat
     4921 ataaaaaagc ccttgctttc taacgtgaaa gtggtttagg ttaaaagaca tcagttgaat
     4981 aaacattcac agagactttt atgacacgcg ttcaatttaa acaccaccat catcaccatc
     5041 atcctgacta gtctttcagg cgatgtgtgc tggaagacat tcagatcttc cagtggtgca
     5101 tgaacgcatg agaaagcccc cggaagatca ccttccgggg gcttttttat tgcgcggttg
     5161 ataacggttc agacaggttt aaagaggaat aagaaaatga cagacaacac tcgtttacgc
     5221 atagctatgc agaaatccgg ccgtttaagt gatgactcac gcgaattgct ggcgcgctgt
     5281 ggcattaaaa tcaatcttca cacccagcgc ctgatcgcga tggcagaaaa catgccgatt
     5341 gatattctgc gcgtgcgtga cgacgacatt cccggtctgg taatggacgg cgtggttgac
     5401 ctcgggatta tcggcgaaaa cgtgctggaa gaagagctgc ttaaccgccg cgcccagggt
     5461 gaagatccac gctactttac cctgcgtcgt ctggatttcg gcggctgccg actttcactg
     5521 gcaacgccgg ttgatgaagc ctgggatggc ccgctctcct taaacggtaa acgtatcgcc
     5581 acctcttatc ctcacctgct caagcgttat ctcgaccaga aaggtatctc ttttaaatcc
     5641 tgcttactga acggttctgt tgaagtcgcc ccgcgtgccg gactggcgga tgcgatttgc
     5701 gatctggttt ccaccggtgc cacgctggaa gctaacggcc tgcgcgaagt cgaagttatc
     5761 tatcgctcga aagcctgcct gatacaacgc gatggcgaaa tggaagaatc caaacagcaa
     5821 ctgatcgaca aactgctgac ccgtattcag ggtgttatcc aggcgcgtga atcaaaatac
     5881 atcatgatgc acgcaccgac cgaacgtctg gatgaagtca tcgccctgct gccaggtgcc
     5941 gaacgcccaa ctattctacc gctggcgggt gatcaacagc gcgtagcgat gcacatggtc
     6001 agtagcgaaa ccctgttctg ggaaacgatg gaaaaactga aagcgctggg tgccagttca
     6061 atcctggtcc tgccgattga gaagatgatg gagtgatcgc catgagcttt aacacaatca
     6121 ttgactggaa tagctgtact gcggagcaac aacgccagct gttaatgcgc ccggcgatct
     6181 ccgcttctga aagcattacc cgcactgtta acgatattct cgataacgtg aaagcacgcg
     6241 gcgatgaggc cctgcgggaa tacagcgcga agtttgataa aaccacggtt accgcactga
     6301 aggtgtctgc tgaggaaatt gccgccgcta gcgaacgcct gagcgacgag ctaaaacagg
     6361 cgatggcggt ggcagtgaag aatattgaaa ccttccacac tgcgcaaaaa ctgccgccgg
     6421 tagatgtaga aacgcagcca ggcgtgcgtt gccagcaggt cacgcgcccg gtcgcttcag
     6481 ttgggttgta tattcctggc ggctccgccc cgctcttctc aacggtatta atgctggcga
     6541 ctccggcgcg tattgcgggc tgtaaaaaag tggtgctgtg ctcaccgccg ccgattgccg
     6601 atgagatcct ttatgcggcg cagctgtgcg gtgtgcagga cgtgtttaac gtcggcggcg
     6661 cacaggccat tgccgcactg gcgtttggta cggaatctgt gccgaaagtg gacaaaatct
     6721 tcgggccggg caacgccttt gtcaccgaag cgaaacgtca ggtgagccag cgtctggacg
     6781 gtgcggcgat cgatatgccc gcaggcccgt cggaagtgtt ggtcattgcc gacagtggcg
     6841 caacgccgga tttcgtggct tctgatttgc tttctcaggc tgaacacggc ccggactcac
     6901 aggtgatttt actgacgccc gctgctgata tggcgcgtcg cgttgccgag gctgtcgaac
     6961 gccagctggc agaactgccg cgtgctgaaa ccgcccgtca ggcactgaac gccagccgcc
     7021 tgatcgtgac taaagattta gcgcagtgcg tagagatctc caaccagtac ggcccggagc
     7081 acctgatcat ccagacccgc aacgcccgcg atctggtcga tggcattacc agtgccggtt
     7141 cggtatttct tggtgactgg tcactggaat cggcaggtga ttacgcctcc ggcaccaacc
     7201 acgttctgcc gacttacggt tacaccgcca cctgttccag cctcgggctg gcagatttcc
     7261 agaagcgcat gaccgtgcag gaactgtcga aagaaggttt ctccgcgctg gcttcgacca
     7321 ttgaaacatt ggccgccgcc gagcgcctga ccgcccataa aaatgccgtt actttacgtg
     7381 ttaacgccct taaggagcaa gcatgagcat cgtgactatt accgatttag cgcgtgaaaa
     7441 cgtgcgcaac ctgacgccgt atcagtcggc gcgtcgtctg ggcggtaacg gcgatgtctg
     7501 gctgaacgcc aacgaatatc ccacagccgt ggaatttcag cttactcagc aaacgctcaa
     7561 ccgctacccg gaatgtcagc cgaaagcggt gattgaaaat tacgcgcaat atgcaggcgt
     7621 aaaaccggaa caggtgctgg tcagccgtgg cgcggacgaa ggtattgaac tactgattcg
     7681 cgctttttgc gaaccgggta aagacgccat cctctactgc ccgccaacgt acggcatgta
     7741 cggcgtcagc gccgaaacca ttggcgtcga gtgccgcaca gtgccgacgc tggacaactg
     7801 gcaactggat ttacagggca tttccgacaa gctggaaggc gtaaaagtgg tctatgtttg
     7861 cagccccaac aacccgaccg ggcaactgat caatccgcag gattttcgca ctctgctgga
     7921 gttaacccgc ggtaaagcga ttgtggttgc cgatgaagcc tatatcgagt tttgcccgca
     7981 ggcatcgctg gctggctggc tggcggaata tccgcacctg gctattttgc gcacactgtc
     8041 gaaagctttt gctctggcgg gccttcgttg cggatttacg ctggcaaacg aagaagtcat
     8101 caacctgctg atgaaagtga ttgcccccta cccgctctcg acgccggttg ccgacattgc
     8161 ggcccaggcg ttaagcccgc aggggatcgt cgccatgcgt gagcgggtgg cgcaaattat
     8221 tgcagaacgc gaatgcctga ttgccgcact gaaagagatc ccctgcgtgg agcaggtttt
     8281 cgactctgaa accaactaca ttctggcgcg ctttaaagcc tccagtgcag tgtttaaatc
     8341 tttgtgggat cagggcatta tcttacgtga tcagaataaa caaccctctt taagcggctg
     8401 cctgcgaatt accgtcggaa cccgtgaaga aagccagcgc gtcattgacg ccttacgtgc
     8461 ggagcaagtt taatgagtca gaagtatctt tttatcgatc gcgatggaac cctgattagc
     8521 gaaccgccga gtgattttca ggtggatcgt tttgacaaac tcgcctttga accgggcgtg
     8581 atcccggaac tgctgaagct gcaaaaagcg ggctacaaac tggtgatgat cactaatcag
     8641 gatggtcttg gaacacaaag tttcccgcag gcggattttg atggcccgca caacctgatg
     8701 atgcagatct tcacctcgca aggcgtgcag tttgatgaag tgctgatttg cccgcacctg
     8761 cccgccgatg aatgcgactg ccgtaagccg aaagtaaaac tggtggagcg ttatctcgct
     8821 gagcaagcga tagatcgcgc caacagttat gtgattggcg atcgcgcgac cgatattcaa
     8881 ctagcagaaa acatgggcat tactggttta cgctacgacc gcgaaaccct gaactggccg
     8941 atgattggcg agcaacttac caaacgagac cgttacgccc atgtagtgcg caacaccaaa
     9001 gagacgcaga ttgacgttca ggtgtggctg gatcgcgaag gtggcagcaa gattaacacc
     9061 ggcgttggct tctttgatca tatgctggat cagatcgcca cccacggcgg tttccgcatg
     9121 gaaatcaacg tcaaaggcga cctctatatc gacgatcacc acaccgtcga agataccggc
     9181 ctggcgctgg gtgaagcgtt aaaaattgcc ctcggcgata aacgcggtat ttgtcgcttt
     9241 ggttttgtgc tgccgatgga cgaatgcctt gcccgctgcg cactggatat ctctggtcgc
     9301 ccgcacctgg aatataaagc tgaatttacc taccagcgcg tgggcgatct cagcaccgag
     9361 atgatcgagc acttcttccg ttcgctctct tacaccatgg gcgtgaccct gcacctgaaa
     9421 accaaaggta aaaacgatca ccaccgtgta gagagcctgt tcaaagcttt tggtcgcacc
     9481 ctgcgccagg ccatccgcgt ggaaggcgat accctgccct cgtcgaaagg agtgctgtaa
     9541 tgaacgtggt gatccttgat actggctgcg ccaacctgaa ctcggtgaag tctgccattg
     9601 cgcgccacgg ttatgaaccc aaagtcagcc gtgacccgga cgtcgtgttg ctggccgata
     9661 aactattttt acccggcgtt ggcaccgcac aagcagcgat ggatcaggtg cgtgagcgcg
     9721 agctgtttga tctcatcaaa gcctgtaccc aaccggtgct aggcatctgc ttagggatgc
     9781 aactgctggg gcggcgcagc gaagagagca acggcgtcga tttgctgggc atcatcgacg
     9841 aagacgtgcc gaaaatgacc gactttggtc taccgctgcc ccatatgggc tggaaccgcg
     9901 tttacccgca ggcaggcaac cgcctgtttc aggggattga agacggcgcg tacttttact
     9961 ttgttcacag ctacgcaatg ccagtcaatc cgtggaccat cgcccagtgt aattacggcg
    10021 aaccgttcac cgcggcggta caaaaagata acttctacgg cgtgcagttc cacccggagc
    10081 gttctggtgc cgctggcgct aagttgctga aaaacttcct ggagatgtga tgattattcc
    10141 ggcattagat ttaatcgacg gcaccgtggt gcgtctccat cagggcgatt acggcaaaca
    10201 gcgcgattac ggtaacgacc cgctgccgcg cttacaggat tacgccacgc agggtgccga
    10261 agtgttgcat ctggtggatc tgaccggggc aaaagatcca gcaaaacgtc aaatcccgtt
    10321 gattaaaacc ctggtcgcgg gcgttaacgt tccggtgcag gttggcggcg gcgtgcgtag
    10381 cgaagaagac gtggcggcgt tactggaagc gggcgttgcg cgcgtggtgg tcggctccac
    10441 cgcggtgaaa tcaccagaaa tggtgaaagg ctggtttgaa cgtttcggtg ccgatgcctt
    10501 agtgctggcg ctggatgtcc gtattgacga gcaaggcaac aagcaggtgg cagtcagcgg
    10561 ctggcaagag aactcgggcg tttcactgga acaactggtg gaaacctatc tgcccgtcgg
    10621 cctgaaacat gtgctgtgta ccgatatctc gcgcgacggc acgctggcag gttctaacgt
    10681 ctctttatat gaagaagtgt gcgccagata tccgcaggtg gcatttcagt catccggcgg
    10741 cattggcgac attaacgatg ttgctgccct gcgtggcact ggcgtgcgcg gcgtaatagt
    10801 tggtcgggca ttattggaag gtaaattcac cgtgaaggag gccatcgcat gctggcaaaa
    10861 cgcataattc cgtgtctcga cgttcgtgat ggtcaggtgg tgaaaggcgt acagtttcgc
    10921 aaccatgaaa tcattggcga tatcgtgccg ctggcaaaac gctacgccga agaaggtgca
    10981 gacgaactgg tgttctacga tatcaccgct tccagcgatg gccgtgtggt agataaaagc
    11041 tgggtatctc gcgtggcgga agtgatcgac attccgttct gcgtggcggg tgggattaag
    11101 tctctggaag atgccgcgaa aattctttcc tttggcgcgg ataaaatttc catcaactcg
    11161 cctgcgctgg cggatccgac gttaattact cgcctggcgg atcgttttgg cgtgcagtgt
    11221 attgtggtgg gtattgatac ctggtacgac gctgaaaccg gtaaatatca tgtgaatcaa
    11281 tataccggcg atgaaagccg cacccgcgtc actcagtggg aaacgctcga ctgggtacag
    11341 gaagtgcaaa aacgcggtgc cggagaagtc gtcctcaaca tgatgaatca ggacggcgtg
    11401 cgtaacggtt acgacctcga acaactgaaa aaagtgcgtg aagtttgcca cgtcccgcta
    11461 attgcctccg gtggcgcggg caccatggaa cacttcctcg aagccttccg tgatgccgac
    11521 gttgacggcg cgctggcagc ttccgtattc cacaaacaaa taatcaatat tggtgaatta
    11581 aaagcgtacc tggcaacaca gggcgtggag atcaggatat gttaacagaa caacaacgtc
    11641 gcgaactgga ctgggaaaaa accgacggac ttatgccggt gattgtgcaa cacgcggtat
    11701 ccggcgaagt gttaatgctg ggctatatga acccggaagc cttagacaaa accatagaaa
    11761 gcggcaaagt cgccttcttc tcgcgcacta aacagcgact gtggaccaaa ggcgaaacgt
    11821 cgggcaattt cctcaatgtg gtgagtattg caccggactg cgacaacgac acgttactgt
    11881 tactggtgaa tcctatcgga ccaacctgcc ataaaggcac cagcagctgc ttcggcgaca
    11941 ccgctcacca gtggctgttc ctgtatcaac tggaacaact gctcgccgaa cgcaaatctg
    12001 ccgacccgga aacctcctac accgccaaac tgtatgccag cggcaccaaa cgcattgcgc
    12061 agaaagtggg cgaagaaggc gtggaaaccg cactggcagc gacagtacat gaccgctttg
    12121 agctcaccaa cgaggcgtct gatttgatgt atcacctgct ggtgctgttg caggatcagg
    12181 atctggactt aacgacggtg attgagaacc tgcgtaaacg gcatcagtga gttgcggggt
    12241 aagcggatgc gatattgttg tagcatccgg aaaaaaaaac gggcaaggtg tcaccaccct
    12301 gccccttttc tttaaaaccg aaaagattac ttcgcgttgt aattacgcag agcgttacgc
    12361 cccaagacaa tccccgcgcc aaccatgccg cccagcagca ccgccagaat caaggtaatt
    12421 gcctttttcg ggctatcgcg acgaataggt aacgtcggtt tcattacata gcggtaagca
    12481 tgaatatcaa gtttatcaac gtcaagattg tcgatatcca gcaggttttg acgagtctga
    12541 tagtagtttg gtgagaacac caacggacga gtcgcttcat gcttaatcat cgactccagc
    12601 gcttcgctcc ccaaaaggaa caacgtatct tgtgtcacat cttcagtctg ctgaacctgt
    12661 ggctttgtca cctgcgcctg attcgcatac tgcaacgctt cctgaatctg acggatacgc
    12721 agatctttct gctcctgcgc aactacttcc tgagttttca gagaatcctg caagtttttc
    12781 atacgcagcg cgatgttgtc tttcaggtct tttcccagtt cttcatttac ctggtcgtca
    12841 acttgctgga tatacttcgc cagctgcttc tgagcacctt caggtgtttc accaacataa
    12901 gacaccgcta aaggtaatga ctgatttttg acggtaggct caatggtcag cttttctgct
    12961 tcttcctggt tatccagcgt ttccgctaat gctgagaatg cagtgctgta acgtccgata
    13021 agtgaagcct gaatgtcgga gactttcggt acagccgatc cgtagatcac attcatcgcg
    13081 ttggtataac cagcgatttg ccccacatca ggttgagtaa cgatagctgt ggaagtccac
    13141 ttttctttgg caacggccag ataccctata gccagggcaa tagcaacaat gacagagatg
    13201 ataattgtca tcttgccacg ccacaactgc accagtaaat caatcaaatc aatctgttcc
    13261 ggatcatggt tttgcccaga aacattatta ttttctactc tcatcattac cctaacggac
    13321 gaaataattt taagtcgcca tagtttagcg ataatcgcca tgaatgctat aggataaatg
    13381 ataaaaataa tgaattatta caaagggaac ataagagaat cagggcgaaa atcgccatga
    13441 taacaggatg ttagtcactg ccaaagagat cgcgggtgta gactttgtct gccacatcct
    13501 taagctcttc tgccatacgg ttggagataa tgacgtcggc ttgtatagtc agcttagaac
    13561 agctttgatt gtaaaatgag cacgttacca gaaaaaacag ccaagtttag aactgatacc
    13621 gattatcttt ttttcttgtc taacggtata atttaacttt cagttatgcc agatgaagat
    13681 tggctatatt ctagcctgag cgaggattat aaatgaaatt tctggttacg ggagctgctg
    13741 gctttatcgg tttctatcta agtaaacggc ttcttgcagc tggtcatcag gttgtaggca
    13801 ttgacaactt aaatgattat tacgatgtca acctcaaaca agcacgactt gatttactca
    13861 agcacgacaa cttcagtttt tataaaattg acctggccga tcgtgagaaa atggcggcac
    13921 tgtttgcaga cgagcggttc gaacgcgtaa taaacctcgc tgcgcaagcc ggtgtacgtt
    13981 actctcttga aaatcccaat gcatatgcag atgcaaacct gattggattc ctgaacatac
    14041 tagaaggatg tcgccataat aatgttcagc atctacttta cgcttcctcc agttctgttt
    14101 atggcatgaa ccgcaagatg cctttctcta cagatgactc tgtagatcat cctgtttcgc
    14161 tttatgcagc aactaaaaaa gcgaatgaac tcatggccca tacatattct catttgtatg
    14221 gcttaccgac cacagggctg cgtttcttta cggtttatgg tccatgggga cgtccggata
    14281 tggcattatt taaattcact aaagccatgc tggaaggtaa aagcattgat gtttacaact
    14341 tcggcaaaat gaagcgtgac tttacttaca ttgatgatat tgccgaagct attattcgct
    14401 tacaggatgt tattccagaa aaaaacccac agtgggctgt agaaacaggc tcgcctgcaa
    14461 caagttcagc accatatcgt gtctataaca ttggtaatag ttcgcctgtg gagttgatgg
    14521 actatatcaa tgcgttagaa gaggctctgg gtattgaagc caacaaaaat atgatgcctc
    14581 tccaacccgg tgatgtactg gaaaccagtg ctgatacaaa agcactgtat gacgtaatag
    14641 gattcaaacc tgaaacgtca gttaaagaag gggtaaagaa ctttgtagaa tggtatcgta
    14701 acttctataa agtttgattt tacaaaacca taagaaaagg ccctaattta ttagggcctt
    14761 ttcttagaat gaaacaaaat aattaatcat tgccaaacaa gtcgcgcgta taaactttat
    14821 ctgctacatc agccagatcg gcagacatac ggttagaaat aataacatca gcttcttgtt
    14881 tgaacgcatc cagatcacgt accacgcgcg accggaaaaa atcgtcctct ttcatagctg
    14941 gctcataaac gattacaggc acacctttcg ccttgattcg cttcataata ccctgaatcg
    15001 aggaagcacg aaaattgtct gaaccattct tcataatcaa acgatagacg ccaacaactt
    15061 tcggtttacg tgcaaggata gaatcggcaa taaaatcttt gcgcgtgcgg ttggcgtcaa
    15121 caattgccga gatcaggtta ttcggcacag actggtaatt tgccagtaac tgcttagtat
    15181 ctttcggcag acaataacca ccataaccga atgacgggtt gttgtagtga ttaccgatac
    15241 gcgggtcaag gcatacgccc tcaataatct ggcgtgaatt aagtcccagg ctttcagcat
    15301 aactatcaag ttcattgaaa tacgctacac gcatcgccag ataagtgttc gcaaaaagtt
    15361 taatcgcctc agcctcggtt gagtcagtaa acaatgttgg tatgtcttgc ttaatggcgc
    15421 cttcctgtaa taacgcagca aaacgtttag cgcgttcaga ctgctcgcca atcacaatgc
    15481 gtgatgggtg taagttatca taaagtgctt taccttcacg caaaaactca ggcgaaaaga
    15541 tcacattttc aataccaaaa cgttctttaa tggactctgt aaaaccaaca gggatagttg
    15601 attttataat cattaccgcg ttgggattaa tttctgtcac atcacgaatg accgcttcca
    15661 cgcttgaggt attaaaataa tttgttttcg gatcataatc ggtaggtgtg gcaataataa
    15721 cgtaatcggc atttttatac gcgtcatact tatctgtcgt agcgcggaaa ttgagatctt
    15781 tagtcgccag atactcttca atctccttat caacaagcgg tgactgcctc ttgttaagca
    15841 tgtccacttt ggcctgaacg atatccagtg caaccacttc gtggttttgc gcaatcagaa
    15901 taccatttga aagaccaaca taacctgttc ctgaaattgt tattttcatt agctctgact
    15961 tcttccggtt aaacatttag agtggtcatt aatccaccac cacagcttca tctactgcgg
    16021 gatttttaac gctgatgtag atgaactgtc aaggcagcga tcctgctgtg cggcgctgta
    16081 ttatatcgcg tttttaacta taaattataa aaaaaggccc taacctgccg ctttgtataa
    16141 taaaaaagcc cggagggttt ctccgggcct tgctttgatt aattgattta aatcagatta
    16201 atccagccat tcggtatgga acacaccttc tttatcaatg cgcttataag tatgcgcacc
    16261 gaaatagtca cgctgtgcct ggatcaggtt cgcaggcaga acagcggcac ggtagctgtc
    16321 ataataggca accgcagcgg cgaaggtcgg aaccgggata ccgttctgta ctgcataagc
    16381 aacgacatca cgcagcgcct gctggtaatc atcggcaatt tgtttaaagt acggagccag
    16441 cagcaggtta gcgatctgcg gattttcggc atatgcatca gtgatttttt gcaggaactg
    16501 cgcacggatg atgcagccag cacggaaaat cttcgcgatt tcgccgtagt tcagatccca
    16561 gttgtactct tcagacgcag cacgcagctg agagaagccc tgggcgtaag aaacgatttt
    16621 gcccagatac agagcacgac gaactttttc gatgaactca gccttgtcgc cagctggctg
    16681 cgcttgcggg ccagagagaa ctttagatgc ggcaacacgc tgatctttca gagaagagat
    16741 ataacgtgca aacacagact cggtaatcag cgacagcggt tcgccgagat ccagcgcact
    16801 ctggctggtc catttacccg tacctttgtt agccgcttca tccaggatca catcaaccag
    16861 gtagttaccg tcttcatctt ttttggtgaa gatatctttg gtgatgtcga tcaggtagct
    16921 gctcagttca ccgttattcc actcggtaaa ggtctgcgcc agttcttcgt tggtgaggtt
    16981 caggccacct ttaagcagag aataggcttc agcaatcagc tgcatatcgc cgtattcaat
    17041 accgttgtga accatcttca cataatggcc tgcaccatcg gcaccgatat aggtaacaca
    17101 tggctcaccg tcttcagcca ctgcggcgat tttagtcagg atcggcgcaa ccagttcata
    17161 ggcttctttc tggccaccag gcataatgga aggccctttc agcgcgccct cttcaccacc
    17221 ggaaacaccg gtaccaatga agttaaagcc ttcagcagaa agctcacgat tacgacgaat
    17281 ggtgtcctgg aagaaggtgt taccaccatc aatgatgatg tcacctttat cgaggtatgg
    17341 cttgagggaa tcaatagcag catccgtgcc tgcacctgct ttcaccatta acaggatgcg
    17401 acgaggcgtt tccagagatt caacaaactc tttcaccgta tagtaaggaa ccagtttttt
    17461 gcctggattt tcggcaatca cttcttccgt cttttcacgg gaacggttga aaatagagac
    17521 ggtataacca cggctttcga tattgagcgc aaggttgcgc cccatcactg ccataccgac
    17581 gactccgatc tgttgctttg acattgttta ctcctgtcag ggggtgttca ccacgggttt
    17641 gcgcggcttg aatcaagttt gaagagtacc ttataacctc aactttacct acctgaaata
    17701 tctatatgtt cttaatattc ttactccatt tttacaaaag ctgctcatac tgttcacgaa
    17761 ttctattcca tgtgtaatgt ttttcagcca gcgacttcaa cttaacacct tgtgttctct
    17821 ctttgggtga ttctatttta attataagat ccttcaggtc tctgaaataa cacgcttgtt
    17881 caaatgttgt ataacgatta tacttacaat caaaacaaat aatcggcttt gcaaaaaaca
    17941 tcatttcaac tagtgatgga ttagtacctc cagcagaatg tccatgcaca tagaactcac
    18001 atccgcttct aataatattt aattgttcaa catcataaat tggatcaata atttctatat
    18061 tattgtactt tgaatatttt ttcttaagac tacgcccata gtcgctactt ccccaattac
    18121 caataaactt caattttttg gtgactttag aaaaagattc taatataaca tgaacattgt
    18181 tttctggctc aatacgacag agagcaagag catatttact ttcggaattc tccacatcgt
    18241 tacatctttt tgtttcaaaa actagtgaat gatctccgcc gtaggcaatt acttgagaat
    18301 ttaccatata ttctgagcac acatagtttg cgatttcctt attatcagaa atcacaatat
    18361 tagaattttt cacagctatt ttttcagacc attttaaaaa ttttttagca aacctacccc
    18421 atttatctcg acgccattct actccatcaa tgtttgtaat tattttaaca gatgatattt
    18481 tttttattat aggaagaata aagcaaccag agactcctaa aataaggagt gtatttactt
    18541 ttcggaatac aatcgcatgc aatatgctaa atgcgtcata aataacactt gatattccat
    18601 tagcgctaag aggaatataa accaatttcg catttttata tgtgcttagt tttttggggt
    18661 aattttttga tgagcaataa acaatataat taaccttttc agtttcaatt aaattttcaa
    18721 caagtgtttc aaaccctcca tacgaagcag gaacacctac agtaccaata atggcggtat
    18781 tactcatatg tttgttcatt tttttcataa atactacttg atttattatt cacagttaca
    18841 catttcatta atacaagaat tagaaatacg ggttcaaaaa atagattatt aaggagtgcc
    18901 aaggtgaaac ttacaagaat aagaagtaag catatattta tttcatctac tgaaacaaaa
    18961 ttatggtttc gtcttttctt taagttttta gagagagaaa taaacatgta actccaagta
    19021 gcgatatata aaacaagagc tataagacca ctctgatgca aaagatataa ataaccatta
    19081 tcgacgtaaa aattcatatc atcttcccct aacccctgca ctaaaccgga accaaataat
    19141 aaacgagaga cgtcattaat attcaaaacc tgaagccagg catctatacg agagaataat
    19201 gtactcaatt ttgtaaaagc tgaataatct atagaagaat atgaattctg aatgtcacca
    19261 ccaaagtata atataaaact tggtgctatg aacaatattc caatcaaaaa aacataatat
    19321 aaattcgcaa gagttagata gtatcgacga aggtaagtat gaatcattat aaataaagat
    19381 gtaactgcaa atgccaacat cccgtttcta ttatatgtca aaacaaccat tatgacaaaa
    19441 ccaacaaata gaaaagcaaa ctttatacga ttgacagatt tattaaaata ataataaatt
    19501 attgcaaagc aacaataact agctaagata aacccagatg aaaatatccc actaaaacga
    19561 agagtaatac cttcttcact tgtttgaaat ggattaatta ttaaaccatg attgtataat
    19621 tgcgaataaa actcttcaac cattttagag tcatacatca cacataaccc aaatattaaa
    19681 agtgataaaa aggtaagctt tgttattata ttaatcaaag agtcaaaaat atccaatttc
    19741 aactttcccg aaccggctaa acaaatgatt ataattggaa aaatatattg tatcgttact
    19801 gcaagcatta attgtaattg tgtataaaca ttattaacaa cgatgttatt tacaagaaac
    19861 aaaattgcag atatggaaaa gaaaaatata aaacatgccc cttgagcttt catttttatt
    19921 gttctgttaa ttaacagata aaacagagag gctaatatta atagaggaat aaacacataa
    19981 ttaagattaa tatttatata caatgatata gccttaatta atccagacaa taaaaaaaac
    20041 agcaataaca actttggtgc ccaagctagc ataaattaat tcctcttgtt attatatcta
    20101 gccttaaagt aactatcaat tttcttgaaa tttatatcga gatctagttg tattctgact
    20161 tttttactac tttcaatagc aaaaagattt agttcttcat ccttttgtga aagcttcata
    20221 atagcaacca tgaaggaatt tagcgttctt tccttgagaa caaagccagt cacttcattt
    20281 ttgataaatt gttctacgcc accatttctc gttgtaacta ctattgcccc actaaaagat
    20341 gcctctgctg cagtcaaacc aaatccttca tatatactac tgcaaatgaa gtatctattc
    20401 tcattatata aattatttag ctgtttaact gtgggttgat atacgtaatg aataaacgaa
    20461 gggaaatttt ctggttttgt ataagcacta aagcaactga atttaattga gctatcaact
    20521 tcgtgaattt tttgtattgc tcttaataag agatcacaac cctttctttc actaggatga
    20581 tatagaaata aaaatgaagc tctatccctt tcattccatg gaatgttaac aaaaaaatca
    20641 tttttgttta ttccattgta caaggtgaga gaaacatccc ctcccatttt tgtaatcttt
    20701 ttcaccaagt catcagaaat agttatataa tcaacatctt tatgtgaaag tgtatagttt
    20761 aaaatattct caggaatatt ccagttttca taatcctgta caaaatatac taatttttta
    20821 tggttaactc tacatgacga attggcgtat ataaacgtct caacagagga gcaaatgaca
    20881 atattaaaat tttcgatatc tctttttttt agagatttaa tcacataatg atttatatta
    20941 gaggatgtaa aatcaaacca tttgtagaac tttaataatg aaaataattt tgcttttatt
    21001 ttacccacaa ggccagaaaa tcgattataa caaacaatac ggttcgtcaa ataaataaaa
    21061 tcaatctgcc atccaacaga tgccaaatag tttccatatt gatacaagac tttatatcca
    21121 ccaacaggct cccttcttgg tcctggtagt aaaatagcta tttttttcat ttagacctta
    21181 aatttataac cacatttttt agccaacata tacatacata tcaaaattga taattgtatg
    21241 cataaggatg ttaatattgt gccatgcagg tgatacagtt tactaaatac aggcatggct
    21301 ataatattta aaataccatt gattgcaata attttagtga agcttttgtc tttcccataa
    21361 ttcaatccaa tttgtgtacc aaagagattg ttttggaata cgaagaatac attaaataac
    21421 aacaataata atacagagta taattcttgt gatattgttg gaaaaataag ctgtatgaga
    21481 taatagccta taaaaacata caacgtgtaa cataacagaa aaacaattaa actaaataat
    21541 gatattcgag aaatcattat aaatactctt tgtttattat tttcaattaa tgatgaaata
    21601 tgtggaaaaa taacgtttag aataggcgtt gttgtaatcg ataacacctt cacgattctt
    21661 tcagcagttg aaaagacaac gaaactttta ggttccaaca ccaaaggtag aaagaaaata
    21721 ttggcataag aaatcaatgt cacactagct tgagatagga atatatacca ccctttaact
    21781 aaaaatatcc atacatttct gagcaaatta gtacgtttaa aagctactac attcaacttc
    21841 ctcctaatat gtatcatcat tagtatgttt gatgcataat ttgctattgc acataaaaat
    21901 agataaaccc aagcatcatt atcattattg accaaaataa aaacgaaggg ataaacaata
    21961 agcttaggaa gtaagccata gaacgtaatt aacttaaaat caccacatcc ttgcaaatac
    22021 caatttgatt gaaatacaaa gcttagcatc caaaaaaaac atagcaacca ataaaggagg
    22081 tcgggtttag tcaatgccat caacgacaca agcaaaaaga atgagcaaaa tataaaaata
    22141 cagagccgtg acaatatgga aatataaaga aaactcttac attttcttag atgctttaca
    22201 ttattactaa tatatctaac accaaacaga tccagcccat aattaattaa aacagcaaaa
    22261 aataatacta atgattgaat aacaacaaaa tctttataga ccgcaataga gagtttattg
    22321 attaagaaag gaattataag aaagggtaga atataattcc caaactggta aataaattga
    22381 ttaactattt tttttaccac attctttcct tcgaataata tcttcgataa ttttattaac
    22441 ttttatttca aataaccatt ctttttgtat gctggcttta atgctttccg aattatttga
    22501 gacaattaat tcatttattt tctcatataa caaatctctt tttgagtatt ctagataatt
    22561 aacaaaccat cgactcttaa tttcaaaatt catagatgat aaacatggaa tgccatattt
    22621 aaagtactca tacattttca atggtgattc atcatgcgat ttttctggca gatatggcaa
    22681 taatccgact ttaaaagatt tcattattga aggaagatca gagtatttaa atgcccccgc
    22741 tatttttata ttttcattca gcttatcacg tatagaatca tcaaaaaatt ttccccaaat
    22801 gatgatactg aatttttttg ataatttatt taaaaaatca atatctaatt tatcagtaac
    22861 gaagccaaca aatcctaatt gatatacctt atttggagtt ccatctataa aacattcatg
    22921 attttggttt tcaagataaa caccatttgg cattacatac ttattaggat ttagaaaatt
    22981 ttttatcgct ttgtcggaaa cagctgtaat tatatcagca ttttcgtcta cataagcata
    23041 tttatctcga acagcttttt tttctttttc agaaaatcta ttatgaattg aaaaattatc
    23101 tattaaatca taccaatatg ttattcgttt attgttcttg aattctaatt cggctatagg
    23161 ggtaaaatca atgatgattg aatcatctgt aaataacgat gatattctat ttaatatctt
    23221 cttgtaacaa tatttcgtcc atatgcggcc aaataacggt ccgattaaat cataacttgt
    23281 atggtcaata aaagttatcc tattactata tgctttatac tcactttttg ctttcttctt
    23341 attttttaat ctttcatata tcgacacagg tctatttata aatgtaacat gatactttct
    23401 agatagaatt tctgcaattt gtaaatctct aacagatgtc ccatattcat tccaaaaata
    23461 cgcatctcta tagccaataa taataaactt catgatttac cgctcttata atgcttaccg
    23521 ctaaaatatg cttttgcaaa atatattaaa cttatatcac ttttattaaa aatcaacttc
    23581 gcaagaagtt tttttgcgac agtaaaaaac gtaaatttac agaaataata tcttaatgtt
    23641 aatccttgat cataacttct ttctttaatt ctaaattgct ttacttttat agcttcattt
    23701 tctagtctag acaatgaatg caatacaacg cactcactga tttttataaa ctcactttcc
    23761 ccaattttat tcagccgtag aaaaaaagtt gaatcaacac cataaaaata aaacctagaa
    23821 tcaaaaacat caccaaatac ttgtcgaagt ttctcacata attttttaga tatacaaatt
    23881 ccactcccaa tagcaagcac tgtatttccc ttgttaaacg attgaatgct atatgtttta
    23941 ggactttgaa tattgtttcc tactattata ttaggaatga tacaatcaga tgtagaatta
    24001 agacattcca aaacataatc atatttcaat atggaatcat gatctagtaa aatatatttt
    24061 tctgactcca cctcattaat aaataaatta tatatataac ttaatgattc attatttatt
    24121 gtttgacaaa cttttaaggt atagtaatct gtagtcagat taaatgcgat ttctcttggg
    24181 ccattattcc aaagacacag aataatatca tcctttgaca tcctattttt ttttagaact
    24241 ctatctatat gagtaaatgt ttcacactgt tctacttctt ttccataaag tacaattaag
    24301 atagctaact tataataatt agtattctcc attccatttc tccaacgcta tcatttcttt
    24361 aaacatcttt tgtttttcat cttttataga taaaatcggt ttatggatac ttaaaggcca
    24421 ctttacgtca atgtcaggat catcccaaat aatccctcta tcactctctg gatgataata
    24481 attggtcgtt ttatataaaa actccgccgt ctcactcagc accaaaaacc catgtgctaa
    24541 tccttcaggt atccacaact ggcgcttatt ctcagcagat aaattcaccc caacccattt
    24601 gccaaaagtt ggtgacgatt tacgaatatc aaccgctacg tcaaaaacct caccaacagc
    24661 gcaacgtacc aatttccctt gcgcatacgg ttctaactga taatgcagcc cgcgtaaaac
    24721 acctttacta gacttcgaat ggttatcttg gacaaattca actttgcggc ctacagcttc
    24781 ttcaaatact ttctggttaa agctttcaaa aaagaagccg cgctcatcgc caaaaacttt
    24841 tggttcaaaa atcagcacat cagaaatttc tgttttaatt acgttcattt aattaataac
    24901 ctttaatcat tttcagcaga tactgaccat aagcattttt tttcagcggt tcagctaata
    24961 ctttcacctg ctcagcagca ataaatcctt tacggtaagc aatttcttct gggcaggaaa
    25021 cctttagtcc ctggcgctct tcaatggtgg caatgaagtt gcttgcctca atcaggcttt
    25081 gatgtgtccc cgtgtccagc catgcataac cacggcccat catggcaaca gataaacgcc
    25141 cctgttccat ataaatacgg ttaatatcgg taatttctag ttcaccacgg gaagaaggct
    25201 taaggttttt cgccatttcg acaacgtcgt tgtcatagaa ataaagcccg gttaccgcat
    25261 aattactttt tggttgtaac ggtttttctt ccaggcttat tgccgtaccg tttttatcaa
    25321 actcaacgac accgtagcgt tcaggatcat ttacgtgata agcaaatact gttgcaccac
    25381 tttctttgtt aacagctacg tccattaact tcggcagatc gtggccgtag aagatattat
    25441 caccaagaac caaagcacaa tcatcaccac cgataaactc ttcaccgata ataaacgcct
    25501 gcgcaagccc atctggagtc ggttgcactt tgtactgaag atttagcccc cactggctcc
    25561 cgtcacccag cagttgttga aaacgaggag tatcctgtgg cgtactgata atcagaatat
    25621 cgcgaatacc cgctaacatc agtgtagaga gcggataata gatcatcggt ttatcataaa
    25681 tcggtaatag ctgtttactg acagccatag ttacaggata aagacgagta ccagaaccgc
    25741 ccgctaaaat aataccttta cgcgttttca tttcatcatt ccttttaatt catcttgctc
    25801 caccatcacg aacaagatgc aaaaactatt aaatagctgt agtcgtaaat aattcgttga
    25861 gcatgcgttt cacgccaatc tgccagtcag gcaagacaag cgcaaagttc tgctgaaatt
    25921 tttctgtatc aaggcgagag ttatgcggac gacgagctgg tgtaggatag gctgttgttg
    25981 gtactgcgtt gagcttgttg agtgcaaggg gaatgcctgc tttgcgcgcc tcttcaaaaa
    26041 ccagcgcagc ataatcgtgc cacgttgtgg taccactagc taccagatgg tacaagcctg
    26101 cgacttccgg tttattcagt gccacacgaa tggcatgtgc cgtacaatca gccagtaact
    26161 ctgcgccagt tggcgcacca aactgatcgt taataacagc taattcttca cgctcttttg
    26221 ccagacgcaa catcgttttg gcgaagttat ttcctttacc tgcatagacc cagctggtcc
    26281 ggaaaataag atgcttcgca caatgctctt gtaatgcttt ttccccggct aacttggttt
    26341 caccataaac gttcagcggt gcggttgcat ccgcctcctg ccatggtatt tcaccggttc
    26401 ccggaaatac gtagtcagta gagtagtgaa taacccatgc accgacctca ttggctgctt
    26461 ttgcaatcgc ttcaacactt gtcgcattga gtaattgtgc aaattcgggt tctgactcag
    26521 ccttatctac cgcggtatga gcagccgcat taacaataac atcagggcga atttttttga
    26581 cagtttcagc tacaccttca gaattactaa aatcaccaca ataatcagtg gagtgaacat
    26641 caagagcaat caaattaccc agaggtgcca gagcacgctg tagttcccaa cctacctgcc
    26701 ctgttttgcc aaaaaggagg atattcatta ctggcggccc tcatagttct cttcaatcca
    26761 cgattgatag gcaccacttt tcacattatc aacccatttt gtattggaca ggtaccattc
    26821 cactgtcttc cgaatcccgc tctcaaacgt ttcctgtggt ttccatccca attcgcgacc
    26881 aatcttctca gcatcaatcg cataacggcg atcgtgtccc ggacgatcgg caatataagt
    26941 gatttgctca cgataagatt tctctttcgg tacaatctca tccagcaaat cacaaatagt
    27001 gagcactaca tctatgtttt tcttttcgtt gtgcccacca atgttataag tttcacccgc
    27061 tttaccttcg gttacgacgg tatataacgc acgcgcatga tcttcaacat acagccagtc
    27121 gcgaatttga tcccctttac cataaatagg taatgcttta ccttccagag cattgagaat
    27181 aaccaatgga atcaattttt ccgggaaatg ataaggacca taattgttag agcaattagt
    27241 cacaatggtc ggtaaaccat aggtacgttt ccacgcgcgg actaaatgat cgctggatgc
    27301 tttggatgcg gaataaggac tgcttggcgc gtaagctgtc gtctcagtaa ataagggtaa
    27361 ttcttctgta ttatttactt catctggatg aggcaaatca ccatagactt cgtcagtaga
    27421 aatatgatga agacggaagc tatttttctt gtcgctatca agagcagacc agtaattgcg
    27481 agcggcttcc aaaaggacat aagtaccaac aatattggtt tcaataaatg ccgcagggcc
    27541 tgtaattgaa cggtcaacat ggctttcagc agccaagtgc atcactgcat ccggctgatg
    27601 ctgagcaaaa atccgtgcca ttacagctgc atcgcaaata tccgcatgtt caaaaacata
    27661 gcgttcagaa tcagaaacat cagcaagtga ttccaggttt ccggcgtacg ttaatttatc
    27721 gacattaaca acactatcct gcgtattatt tataatgtga cgaactacag cagaaccaat
    27781 aaatcctgcg ccaccagtaa caagtatttt cacttaattt attccatatt acttcagagc
    27841 atgctgtgaa ataagcggct ctcagtttga ttaatagagg tattaatgca cgctaccgcc
    27901 cctggcttta cagctaccag agcactgcat gcatgcctac gatgtgacga gcgttaccca
    27961 ctcgcgctaa acccgaaaaa ttcaaacgct aattgtctta ccaatccgct ctggaaacaa
    28021 ggaaaatcct ggaaaacttt gactaaaatc ctattgctaa ctcgttgtta tcctgattgt
    28081 ttatataaaa caacggcagg aatattcgca acaaattact ttcgccacga atcttcactg
    28141 ccgttataat tttcttatca accgttacat ccggtcagat tttcattatt cgcttaacag
    28201 cttctcaatc cctttgcgga acttcgcccc ttctttgagg ttgcgcagcc catacttcac
    28261 gaacgcctgc atataaccca tttttttacc gcaatcgtag ctgtcaccag tcatcagcat
    28321 ggcatcaacg gactgttttt tcgccagttc ggcaatggca tcagtcagct gaatacgccc
    28381 ccatgcacca ggctgagtgt gttcaagttc cggccaaata tcggcagaaa gcacataacg
    28441 gcccacggcc atgatatctg agtccagcgt ctgcggctga tccggttttt cgataaattc
    28501 gacgatgcga ctgactttac cttcgcgatc cagcggttct ttggtctgaa tgacagagta
    28561 ttcagagagg tcacccggca tacgttttgc cagcacctgg ctgcgtcctg tttcattgaa
    28621 gcgcgcaatc atggcagcaa ggttgtagcg cagcgggtcg gcgctggcgt cgtcgatcac
    28681 aacgtctggc agcaccacga caaatggatt gtcaccaatg gcaggtcgtg cacataaaat
    28741 ggagtggccc aaacctaaag gttcgccctg acgcacgttc ataatggtca cgcccggtgg
    28801 acagatggac tgcacttccg caagcagttg acgcttcacg cgctgctcaa ggagagattc
    28861 taattcataa gaggtgtcga agtggttttc gaccgcgttc ttggacgcgt gagttaccag
    28921 gaggatttct ttgatccctg cagccacaat ctcgtcaaca atgtactgaa tcattggctt
    28981 gtcgacgatc ggtagcatct ctttgggaat cgccttagtg gcaggcaaca tatgcatccc
    29041 aagacccgct acaggaataa ctgcttttaa attcgtcatt atttcatcca cctgtaaaat
    29101 ggttgctgaa ttatagcttg ttcgattttt ttcgccagca tcaattaccc tgaattgatt
    29161 actgaattac ttgtgatgtt acgccgcttc gttgtggatt gcagtagcat tgttcctaag
    29221 tatggctcca tttttccagg aatggtcgca aatctactct ctccgttccg gcaatctaaa
    29281 gttaatcttt tccacattaa caatatggtg attaaccctg tcgatatcga cggagctttg
    29341 tcctttctca ttcaccgcat gaacatttgc aagagacagc agtgtttctt ttttcgccat
    29401 aaagacgccg cgaacgtctt tgcgcatgtc gaagttcatg ctcaatgcgg gtccaactga
    29461 ggattcctgc atcacattga tattacgcat aaaaaggtgt tgcggtttat tgtatagctc
    29521 aagcgacgca cgcttcatct caatgttagt cagcgccaca aaggagacgg cattcccggc
    29581 ggagatttgg ataccgcgca atttataagc aaggtgggta ttatccagtt gaatattatt
    29641 cactcggaaa ttttgcggta tcgagagata tttgccttta attaccccat agccgattaa
    29701 catcccggcg ctattaatca tttcaatatt atcaatcacg aaattgtcac aaccgtaaat
    29761 agcaactgtc gcgttatcaa tgcctgcttt cttactgaaa tccggcgtga tattgcgggc
    29821 tttgatatta cggataacaa aatgtttgcc attttcaaca tggatcaact gccgacaatc
    29881 cgatcccgtg atattcgcca cgacaaagtt tttcactgcc tgatcttccg ggtaattatt
    29941 atcgtaagtg cttcccgcaa ggcctatgcc aatgccccag ttgattttgc cgttggtaca
    30001 gttgatgcgc tcgatgacat ggtcggagat caaaatatca ctgtcgttaa tcgccacgtt
    30061 ccattcaata gcgtccccct gtaaatcact aaatttacag ttggtgatgt tggcaccaat
    30121 tatctggtta tgaaatccct ggcgtaagat ggcgtaatta gcgtggctga cagtgaggtt
    30181 atcgatggtc aggttgcgca tgacccgttt gtttttgccg ccgatataaa tctgcgttac
    30241 cgggccaaag ccgctcatcg ccagcccttt gatggtgcag tcagaaccac gcacatccag
    30301 ggtgatgtta tgcatactgc cgccctcctc ccctgtcacc tggctgccgt cctgtaagac
    30361 aaatcgccct ctgccgttgc cgcgcaggct tccaaggatg tgtaacgttt ttccaggagg
    30421 aatgaagatg ccggtgttga tattgtcaca aacgaatcca gcaggcacga cgaccgtttg
    30481 cccttcgctg aaggcttgtt taaatgaggc gatccagtcg tgagggttgt agtcgttaat
    30541 gttaacgctt tgtcgggcgg gaagtgcgcg agcgaaaggg gtatggagga aggcaagcgc
    30601 cgagcttgcc gtcaggaagg tgcgtcggga gattttttta aatggcatac gttctcctct
    30661 ataaagcctg caacaagctg gcgagttctc ggttaatcac ctgctggtta aaatcgtgtt
    30721 cgactttttc gcgcgcacgt ttgacaaccg gagccagttc gtcggtgtta agttggctaa
    30781 acgccgccag tcgttgcgcc agtgcgcgag catcgttctc aggcaccagc cagccggatt
    30841 tgtcggcctc caccagttcc ggtattccgc tatgcagagt agaaaccacc ggaatgccga
    30901 ccgccatcgc ttccattagc gccactggaa tgccttccat atcaccatcc gcgcccgtta
    30961 ccgatggcaa caggaagaca tccgcgtcgt cgagcatcgc tttcacttca tggctcggtt
    31021 taaagcccgg catctctacc acatcttcca gttgatattg ttcgatgagg gtgcgcaggc
    31081 gtcgttccca cgggccaatg ccgagaatgc gatagcgaaa tgccacgccc tgctctttca
    31141 actgacggca ggcttcaatc gccacatgca gacctttttt ctcggttaag cgtgcgacgg
    31201 aaataatctc cagcggtgtt gcgggcgctt tcacgggacg cgggctaaag cgcgtcatat
    31261 ctacgcccat gcgcgatacg gcgatttttt ccctcgggca gcccattttt tgcagccttc
    31321 cggcccacaa atcgcttatc ggtaacatca gatcgccacg gcgaaacagt tgttgatatt
    31381 cgggagtgta gtggttgagc acttcccgac tggaaatatc aatgccgtgg aaaatggtgg
    31441 caattttgcc gcgaatgaca cccagttcgc ggagttttgc tgcggttacc cccgctggac
    31501 caaaatgagc gatgaacaca tcggcgcgaa acggtgttgc gacctggccg caaatggcag
    31561 acaaaatcag attccgcgac tctgcgccat agcgtttgag gttgagcgcc tgccaggtat
    31621 ttttacgatg aatgcctcgt aacgtctggc tggcacggtg gcgtagcttc gccactttgc
    31681 ccgtaggttc gtcctgtaac caactggttc ttgcggcaag gttgtatttc gtccatgccg
    31741 cgtgggtgtt ctgggtgtcg cctttttgca gcgcgacaat ctccacctca aagcccatat
    31801 caataaacgc ggtaatttga ttgaggacga aggtttccga agacagcgga aatttcagta
    31861 aaaagaagcc gaccttcatt tcacctcccc gatgcgctca agcacagatt gcaccatctg
    31921 cattcccgtc tgacgctcac gactgacggc ttcgctaagt cgtgcgttca gcgccggaag
    31981 ctggcctaag gtatccgcaa ccatcgcttg caggctgccg tctaataaat gacggatatc
    32041 aattgccatc tccggtagtc ccagctgctg cataatcccg gcggatttat gttcatagtt
    32101 gatggcaatc gccggagtag caaagttcat tgagataatg gcggagtgca ggcgcgtacc
    32161 gacggtgagt tcacaggccc ccagaatttt gcccatttcc agatcgttga gttcatccat
    32221 cactacgtgg taacgggcag gatcgctgat gtgctgacgc aagttgagcg ccaccatgcg
    32281 gtcgtctttg ttatagctgt cgatgcccgt acaggtggag agcgcaatca cctgatagcc
    32341 ttcgtcgaga atgcgattga ccaccccggc aaaggctttt tcatacgctt gctgagtggt
    32401 gccgagacgt ttgtcgaacg gtgccagttc gcgcagggta attgccaccg ttttctgttg
    32461 tgcggcaacg tccagccagt gttgaacggc atagctggca gtgaagtctt cggtgtggtg
    32521 atcgaccagc cacgcagtat cgacgccatg ttccactttt gcagtggtga tattgctgcg
    32581 tttcatcaga tcaaggctga ccgattcgcg caggatcagc gcgtcacagt gaccaaaaac
    32641 gtagttcgcc agttggttaa attgctcatc ctggaaggga ccgacgctgt gaccaatcat
    32701 aaacagcggc tttttcgcca taaacgtgca aagtgcatgt tcaaactgcg gcacgccata
    32761 gagatcgaca aaaaacgatc cgccgacctg gataatggca tcgtaacctg acagtaggcg
    32821 cacgaagtca gtgaatccct gggcgatggc aatattgcgc agcttgccag tgtcggtgac
    32881 gcgcgagagc aatacctggt gttgatagcg gcgacggagg acttttttaa cgcgcccgac
    32941 aacgcccgcc gcgctgttgt gttgtttcat ttgcaggaac agcggatcgc ccattaccgg
    33001 gcggttgagc agccaggaag aactgaccgg atagcggctc atcacgtcca cttcggcgtg
    33061 tggattgagg atgttgatgg catcaagtaa gccacgcaag atggcgctgt cgccacgatt
    33121 gccgcaagtg tggttgccca gaataagtaa tttcattttt tcctcataaa tttgatgcca
    33181 ggtgaggctg cgtttgtttt gttcgttgcc gttttttgcc tgatgcgacg ctggcgcgtc
    33241 ttatcaggcc tacaagaccc gagcacagaa ccgtaggccg gataaggcgt tcacgccgca
    33301 tccggcattc agtgcctgat gcgacgctga cgcgtcttat caggcctaca agtcccaagc
    33361 acagaaccgt aggccggata aggcgttcac gccgcatccg gcattcagtg cctgatgcga
    33421 cgctgacgcg tcttatcagg cctacaggtc ccgagcacag aaccgtagga tggataaggc
    33481 gttttacgct gcacccggca accgttgtcg gaaccgaaaa caacaactca ccccgcccgt
    33541 aaaagcattt tcattttttc gctgcgacaa aactgacgct tcacttccac caccagcgga
    33601 tggcgcgaca gcacaatcat caccacaaac gccagcacgc ccgcggctat ttgcaccccc
    33661 agcagcatcc ccagcgccag ttgccctttc agcacaatgc ccagcacata actgaccacc
    33721 agcgtcggca gcgagagata aaacggcagc cacaaactca ggatgtactg gcgataactg
    33781 gaaccaagaa ccggtttaat catcacgaag taactcagaa tggtgttgat aatctgcacc
    33841 agcaggaaac cgagcgtgac gccgattgcg cccgccatct gcccaccaat aacaatcgcc
    33901 ggaataaaca gaaaggtttt gaatacgttg aatttaaagc tgatgtcgac ccgcgctttc
    33961 gccatcagca gcgaaccaat cgggttaccc acggagcgca gcagacccac aatacacagc
    34021 aattgcagca ccggaataat gctgttccac ttttcgccga ataccagcgg tacgaagtta
    34081 ttcgacacca ccatcagccc cagcagcgct ggaaagttaa taatccccac caccgacagc
    34141 agcttgtaga agttgacgcg cagcttttcg gtgtcgtcct gaattttggc gaatgccgga
    34201 aacaacacac gggtgatgat cgggttcagc ttcatcggcg gcacaacggc cacgttgtac
    34261 gccaggttgt atcccccggc cacgcccgcg ccgagaatac gcgccagcac cagcgttgaa
    34321 aggttggtgt tgagatagtt gatgatgctg tccgccgtca gccaggcacc aaagcgtaag
    34381 ttcggtgcca ccgacaccag cgagaagtgc agaccggggc gataaatttt gcggccaaag
    34441 tagccaaaca gcagcgttct taccgcacta ttgaccagat aaccgaggat cgcgatcatc
    34501 gccagcggcc agaaatgggc gctaaccacc gtaaaagtaa agcccgccag caccgcgctg
    34561 gtttcgatca tgccgatttt gttgaactcg agctccttct gcatcaacgc gcggaactgt
    34621 tgcccgtggg ggatcaccac aaacgccagc gacaatgttt taatcaacgg tgccaggtcc
    34681 gggttattca gcacgtcacc aatgagatca ctcaacaaaa acaccgccac gcacaccaca
    34741 agccccagcc cgacgttcag ccagtacaac gtggtgagtt caaggtgact gatttctttt
    34801 cgctgaataa tcgagttagc gataccgaag tcagaaagcg tatctgccag cgcgataatc
    34861 accagcgaca cggtaagcag gccgaactgg tggttgtcga taatccgcgc cagcacggtc
    34921 atctgcacca gcccgaggcc gatgatgatc accgtggcaa tcgccgacca cttcgcgccg
    34981 ctgatggtct tttcacgtaa gctcatatca atatgccgct ttgttaacga agcccttgaa
    35041 taccgtcagg aaaacgattt tgatatcgaa ccagacgctc cattcgcgga tgtactcaag
    35101 gtcgaactcg acgcgttttt ccattttctc cagcgtgtcg gtttcgccgc gccagccatt
    35161 aatctgcgcc cagccggtaa tgcccggttt cactttgtgg cgcagcatgt agccttcaat
    35221 gagctggcga tactgttcgt tatgcgccac cgcgtgtgga cgtggcccga caatcgacat
    35281 ccccccggtc agcacattga taaactgcgg caattcgtcc agcgaggtgc ggcgcagaaa
    35341 gttccccact ttggtgacgc gcggatcgtt ctgcgtcgcc tgagtcacga ctttgtcgtt
    35401 ctccatcact ttcatcgaac ggaacttcca cactttgatc ggcttgccat ccatgccata
    35461 gcgagtctgg cggaaaataa ccggtcctgg tgaactgagt tttaccgcca gcgcaataca
    35521 gcacagcacc ggggagatca gcagcagaat aagcgtcgcc agcacaatat cttccgcacg
    35581 ttttagcagg cggttaaccc cggaaagcgg cgtatcgtac agcggcacca ccggaacgcc
    35641 gttcatctct tcgagacgtg aatggagaat gttgaaggta aagacgtcgg ggatcagcag
    35701 caccgaacag gtggtgtccg ccagttgatg gaccagtttt ttcactcgtg cgccgtcgca
    35761 catttgcatc gcgatataga cgttatgaat cttgcccgct ttcgcatcct cgaccagctg
    35821 ttgcagattg cccgcccagt cgttagaaac gccacccggt ttcgggtcgt ggtaaacgcc
    35881 caccacttca aaccctaacc acggctgatt acggaagctc tccatcagca tttgtccggc
    35941 ggctaaatct cccgctacgg cgaccatacg cttgttatag ccatgattac gcagccagcc
    36001 cgccccaatg cgaatacatg aacggcaaac caccagtccg atactggtca gccagatttt
    36061 cagttgcgtg tcgaaatcat tattgaacgc caccagtccg gcgctgaaaa tcacgcttaa
    36121 ggtccagttt tgtagcaaca gggcaaattc tgtcgctgcc cgaacaccgc gccatgagcg
    36181 ataaaaatcg gtgatgccgc ccagcatctg gaacaccacc agcgtaatca acgccaccaa
    36241 caggtgcatg tagaggaatg acagtccgct cacttcgcaa accagccata gtccggcaaa
    36301 catgatggtg atatctgaaa agcgttgcac catagagatt aacgatgcat tggttttcgc
    36361 tcgctcgcgc ttttttagat ttgtcatcgt tgttcctgtt attagcccct tacccgcagt
    36421 ggggtaaggg aagatccgac attactcatt cagcaacgtc agcagagttc gcgttcgcgc
    36481 ttccatcagc ggcacatcac cgcgcgattc cacattcaac cgcaccaccg gttcggtgtt
    36541 ggaggtgcgc aggttaaagc gccagtcggc aaaggtcatg ctgatgccat cggtacgatc
    36601 caccgccagc gcctcacggc taaaatgctg ttcgacgcga ttaatcgcct caacgggttg
    36661 cgccagtttg ctgttgatct caccgcttgc cggaaacgcc gccatccggt cgcgcaccag
    36721 ttcgcccagc gtttttcctt tcaggcacaa cagttcggcg accagcagcc acgggatcat
    36781 gccgctgtcg cagtaagcga aatcacggaa gtaatggtga gcgctcattt cgccaccgta
    36841 gatggcgtct tccttgcgca tccgttcttt aataaaggcg tgtccggttt tcgacattac
    36901 cggggtgccg cctgcggcag tcaccacatc aatagtgttc caggagagac gcggatcatg
    36961 gatgatcttc gcgccgggat ttttttcgag gaacgcttct gccagcaggc cgacaatgta
    37021 gtagccctcg ataaactgcc ctttttcgtc aaacagaaaa cagcggtcaa aatcgccatc
    37081 aaaggcaatg cccatatccg cgccgtgttt gatgaccgca ttgcgggtgt cgtcgcggca
    37141 ttcaggcagc agcgggttag gaataccgtt ggggaaattg ccgtcgggcg tgttgtgcac
    37201 tttgatcaat tccacgggcg cgccgagggt tttaaagcgg gcttcaatgg cgtccaccac
    37261 cggacccgct gcgccattcc cggagttaat caccagcttg agcggcgtga ggtttttgac
    37321 attgatataa ccgaacaggt gatcaacgta agcgtcacgc aggttgattt gctgatagcg
    37381 accgcgtttg gtttcatcga cgggaggaaa gtcgttggct tctgccagac gctggacgtc
    37441 gcgcagtccg gtatcaccgc tgattgggcg agccccttcg cgcaccagtt tcatgccgtt
    37501 ataatccatc ggattatggc tggcggtaac ttcaatgccg ccatccacgc cgagatggaa
    37561 cgtggcgaaa tagatctctt cggtgccgga catgccaata tccagcacat cgacgcccgc
    37621 atcctgtaaa cctttcgcca gcgccagttt taaggtttcg ctggtgagac ggacatcacc
    37681 gcctaacaca atggttttcg gtttgagaaa ttcgccatag gcgcgaccaa tgcgccaggc
    37741 gatatcttca ttcagttctt cgcctaattt cccgcgaata tcataggctt taaagcaggt
    37801 taattttttc atgtcgttac cctttttcag gcaatagttg gccctgaccg aaacggccaa
    37861 ttttgttttt gtcgttattt acatctcggt ttcgcattca ttgcctgatg cgacgctgcc
    37921 gcgtcttatc aggcctacaa atccgaaccg taggtcggat aaggcgttca cgccgcatcc
    37981 gacaaacagc gcctgatgcg acgtttacac ccgtccgtag cgatccgcga agcgcaccac
    38041 atcatcctct tcgagataag agccggagcg cacttcaatt aaatcgagcg gaattttccc
    38101 cgggttttcc aggcaatgcg tcgcccccag cggaatataa atggactcgt tttcaccaag
    38161 cagtttgata tcaccgtcga tagtgacttt tgccgttcct gcgacaacca cccagtgttc
    38221 cgcgcggtga tgatgcatct gtaccgacaa gccttcgccc ggtttcacgg tgatgcgttt
    38281 cacctggtag cggtcgcccg cgtcgataga gtcatatttg ccccacggac gatacacttc
    38341 gcgatgcacc cgatgctcat ggcgaccatc ggctttgatc tgctcgacca cttttttcac
    38401 atcctgcacc gcgttacggt cggcaatcag cactgcatct ttggtctgca ctaccaccaa
    38461 atctttcacc ccgacggtgg tgaccaggcc agattcggca tacacatagc tgttttcagt
    38521 tttgtgatta atcacatcgc cgtggcaaac attgccctcg gcggtgtggg cgctgatctc
    38581 ccataatgaa gaccaagaac cgacatcgct ccagcccgca tccatcggca ccacaacagc
    38641 atctgccgta cgttccatga ccgcgtaatc caccgactct tccgggcagg ggagaaacgc
    38701 ttcttcatcc acgcgaataa aatcgagatc cggatcgacg gcgctcatcg ctttttcaca
    38761 ggcatcgaga atatccgggc gatatttttt cagttcttcg agatagcgtc cggcgcggaa
    38821 caggaacatg ccgctgttcc agtaatattc gccacttgcc acataggcct gagcggtttc
    38881 cagattcggt ttttcgacaa actgcgccac ttcaaaggcc accgtatcct gctcacccgc
    38941 agacacttca ccgcgacgaa tatagccata accgatttca ggtagatccg gcacaatgcc
    39001 aaaggtcacc agcttgcccg cttcggcata cggtatggca ttacgcacgg cggcacggaa
    39061 cgcgtcttca tcggcaatca catgatccgc cgccagcacc agcattaacg ggtcgctctc
    39121 cggactatga cgtgttgccg ccagcgccgc cagcgcaatg gctggtgcag tgttacgccc
    39181 tgccggttcg agaataatgt tctcggtgag tttgttcagt tggcgcagct gttccgcgac
    39241 aataaagcgg tgctgctcat tgcaaatcac caccgggctt tcgcactcta cgcctttcag
    39301 gcggcagatg gtggtttgca gcatggtgag atcgcctttc aggcataaaa actgcttggg
    39361 gtaaagtacg cgggaaagcg gccataagcg gctaccggag ccacctgcca tcacaactgg
    39421 atagagtttc gactgcgcca taattatccc cgaatatcat ttataaattg acgtaacacg
    39481 ttctctttat cgagcgtgcg ttcggcatat tcacgtgcca ccgtgttgtg tttgggcagc
    39541 aggagcgcct gacgaatccc cgccaccagc gcctcgaccg attccggttc aacgcaaacc
    39601 gcaatgcccg gaaaggtttc gcaaagctgt cccagttctg tgtgggcttc tgcagtaatc
    39661 accgcgttac cgcctaccgc cagaatattg gtcagtttcg acggcaatac ggcatctgcc
    39721 gcgccgcgtt tttgcaccac cagatggcaa tcgcccatct tcagcagtgc gggtaaagcg
    39781 tcatacgatt gcagcggaaa aaattgcatg ttgcgcagac cacgctgttg cgccattttt
    39841 tccagccgcg ctttgccgcc gccctgcccg acaatggcaa aaatcagcgg ttcatcacgc
    39901 aggcgatcgg cagcttcaat aacgttttcc agcccctgct tttcaccaat attgccggag
    39961 taaagaatga tttttttgtt atccggcagg ccaagctggt tacgaagggc atcaacatcg
    40021 acatctgcga catgctgaaa acgggcaatt tctgaccagt tggggaagaa gatgacgttt
    40081 tctgccgcca cgcctttttc gatggcttta ttcatcatcg aacgcgaaat cgtggagacg
    40141 ttatcgacgt tatgcagtcc gctacgttcg aacgccgttg ccagctgtgc cactttgccg
    40201 cctttgcctt ttccggcaag gcccagcccc agcatggcgt ccacttcgta atcctgaata
    40261 tgcagcacgg tacgcgcgcc agagagtttc gccagcaggc gcattcccgg cgtgcaaaac
    40321 agcgttggca ctacgccgat aatgcgatcc ggcttccagc gacgttgcgc catcaacggg
    40381 aaaaaactgc tgacggcaaa actgccgaga tgcaacaggc gtttcagggt gctcggctgt
    40441 tttggcacgt acagcgggca gcgccacacc gtagcggccc cctcttctcg tttgtaccgc
    40501 caggcggaat agttctcgcc cacctgccac tgcgggtagt aaggcggtgc ggtaataacc
    40561 cgcacctcat gaccttgcgc cgccagccat tcaaccatct ctccggtgta tttgccgatg
    40621 ccggttaact ccggcgagta gttaatgccg tagaccagta ttttcataat ccgggtactc
    40681 cggcacgctt ctcagcgaga aaataggcgc ggctgttagc gtgaacatcg ttactggcga
    40741 gcagcgcgtc cggcgtcagc cagcggtaat cgtcatgctg ctcatccggc agtaacagat
    40801 cttcttcagc gactctgaag cgaaaaccga gcaccacata gtgagtggtg aaatccgtgc
    40861 cggagaagtt atcgtcataa aagtgctgcc agacaccgta aaactggcct gctgttatcg
    40921 gtagacgcag ccccagttcc gccatcgtca gccgctcaaa tgcggcttcc agcatttcgt
    40981 ctttctgcac gcgccctccc ggcacaaacc agtaaccctg cgccgggcgg ttggttcttt
    41041 tgccaagcag aaactcgccg cgactgttct cgacaataaa atcgagagag acaagcggag
    41101 tggagcgcac taccgtggca aagtcttcct gacgtaaaaa catcattacc cccgaaagcg
    41161 gtcttgattc tcaaggaacc actggtaagt gctggcaagc cccgcttcca gtgagatttc
    41221 gtgataccag ccaagctgat gcaggcgcgt cacatccagc agtttgcgcg gcgtaccatc
    41281 cggcttgcta gcatcaaaaa ccacccgacc tttgtaaccc accactttgg cgatggtttg
    41341 cgccagctcg cggatagtgc agtcaacgcc cgtgccgacg ttaatgtgtg acagcatcgg
    41401 ctgggtgttt tccagccaga cttcgtgcgc cagctccatc acatgaatgc tcgccgccgc
    41461 catatcatcg acgtgcagaa attcacgcat cggtgtaccg ctgccccaca ccaccacgtc
    41521 cggcgcattc tgtgccgtcg cctcgtggaa gcgacgcagc aatgctggga tcacatgcga
    41581 gttactcgga tggaagttgt cgtgtggccc gtacaggttg gtcggcatga ccgagcggta
    41641 atcgcgtcca tactggcggt tgtaagattc gcacagtttg atcccggcga ttttggcaat
    41701 ggcgtaaggc tcgttggtcg gctccagcgt accctgcaat aactcgcttc ctgccatcgg
    41761 ctgttttgcc agtttcgggt agatacagga cgatccgaga aacagcagtt tgttcacgtc
    41821 gttctgatgc gcggcgtgaa tgatgttgct ctcaatcatc atgttctggt agatgaaatc
    41881 cgccggatac gtgttgttgg caacaatgcc gcccactttc gccgccgcca gatagacctg
    41941 gtcaatgctt tcgctggcaa agaaatcatg cacagcgcgg ctgtccagca ggttcagctc
    42001 gtcgcgggtg cgtaatacca gttccacatc accgcgctgt tcgagctgcc gcctgatggc
    42061 agaaccgacc atcccgcgat ggccagcgat aaaaatgcgt tgtttactca tgcttatgac
    42121 tccagcgcga tcgccacgtc gtagccgtga gatttcagca gagagtgttt tttcgccgct
    42181 tcgaggtcat tagccaccat ttcagacacc atctctctga gggtgatttc cggtttccag
    42241 cccagttttt cgtgcgcttt ggtcgggtcg ccgagcagcg tttcaacttc tgccggacgg
    42301 aagtaacgcg ggtcaacggc gataatcaca tcacccggtt taacgcccgg cgcgtcatgc
    42361 ccggtgacgg aaaccacaat gcccttctct tcaacacccg tgccttcaaa gcgcagtttg
    42421 atgcccagct gtgctgccgc catttccacg aactgacgca cggagtactg aacgccggtc
    42481 gcgataacga aatcttccgg ctgttcctgc tgcagcatca tccactgcat ttttacgtag
    42541 tctttggcgt ggccccagtc acgcagggaa tccatattgc cgaggtacag gcacgactcc
    42601 agcccctggg cgatgttggc gattgcgcgg gtgattttgc gggtaacgaa ggtttcgccg
    42661 cggcgcgggg attcatggtt gaagagaatt ccgttacagg cgtacatgcc gtaggattca
    42721 cggtagttaa cggtgatcca gtaggcgtac agtttggcga ccgcatacgg agatcgcggg
    42781 tagaacggcg tggtctcttt ctgcggaatt tcctgcacca gaccatacag ttcagaggtg
    42841 gaagcctgat agaaacgagt tttcttttcc agaccgagga agcggatcgc ctccagcagg
    42901 cgcagcgtac ccatcgcgtc gacgtcagcg gtatattctg gtgactcaaa agagaccgca
    42961 acgtggctca ttgcgcccag gttgtacact tcatccggct gtacttcacg caaaatgcgc
    43021 gtcaggttag aggtatcact caggtcgcca taatgcagat ggaatttcgg gttgcaggtg
    43081 tgcggatcct gataaatgtg atccacgcgc tcggtgttga atgacgatgc gcgacgctta
    43141 ataccatgca cctcgtaacc tttttccagc agaaactctg ccaggtaaga accgtcttgt
    43201 ccggttacac cggtgatgag agcgactttt gacatgtatt attcctctgt atttttgaat
    43261 ttattcagtt tcaacgcgtt cgcgtatcac cactgcggga ttcccccggc aaaccacatt
    43321 tgccggaagc gatttaaaaa cactgcttcg tgcacccacg acggtgccgt cgccgattgt
    43381 gacgcctggg gcaacaaaga catcggttgc cagccagcat ttctcgccaa tcacaatagg
    43441 cgtggcgtta atggtgaaat gttgacttgc atggtcgtgg ctaccggtgc ataaataact
    43501 tttttgcgat atcaccgaat gtgcgccaat ggttatttca ccgagggtat ataaattgac
    43561 gtcatcgccg acccacgcgt aatcacctaa ggttaatttc cacggatagg taatttttac
    43621 tgacggacga ataactacgt tttttcctat ttttgctccg aataaacgta ataaaaaagc
    43681 ccgccagcga tacaatactt gtggcgacca ggcaaatatt gttgcctgta ctgcccacca
    43741 taattgcact ttaatagcgt tgccgccccg gaaccctttc ggcaccgaga aaccgcttaa
    43801 atcttgcatt ggttttcctt atattcagac tttgttatat aaggctttcg tctttgaggt
    43861 agtacgttgg cgtaaatgcc aggataattc agcccaaaag ccaggcacat gtaatatttg
    43921 tcgttggact tttttcgcgt cagcacacaa ttccatatta ttggtggtag ataccccacc
    43981 catggaaaat tcagacacca ggccattgag ttttttaaat gcataaccgg ctttatacat
    44041 tttggctgcc agcgcgtagt cggaagaaac tttatattcc aggtcataac gccatttttt
    44101 caagccggat acagggaaaa atatcgcctg atgactggcg ggcaggctgt gataaatata
    44161 ccagcccggt ttggcgctac gtttaatttt atgcccgtcg ccaaaatcca gcagcgcatc
    44221 gccggtgatc atcacgttat ctttttgcat ttttaactta cggacaaaat ttgcggcatt
    44281 ctgatgaaaa atatcgcccg aattgagaaa caacgcgaac ttgccttgtg ccatcgcaat
    44341 gcctttgttc atggcgtcgt agataccgtt atctggctcg ctgacaaagc gtaggttaaa
    44401 gataccattg agattttcca gatactcacg ggtgccgtcg ttggaaccgc catcgacaac
    44461 aatccattcg aagctgatat cttccacctg cgccagatgc gccagcgagg catgtgtttt
    44521 gactatccct tcgaggttac gaaacgcgac agtgattatg ctaagcaaca tgttcttatt
    44581 cttacctcgt aatatttaac gcttttcgca aaataaacgg acagacgatt aaaaatgcat
    44641 attccgggct aaatatcgaa ccggtaaaaa acagcgatac cggagtaaaa agatataatt
    44701 gcacgcgaaa attgtggtta tcaccaaaag cgttgatcat catttttatc actttcccca
    44761 tgtaccacag tgataaaaac accgcgaacc aggaaaaata aataatcagc agatacaaac
    44821 cattgtctat ggtttttccg acatccgcac cgttaaatat tccgaatgat gcgacatatt
    44881 cataaagtga gccaaatctg actacaccgt caatatgggt caaagaataa ccgaccatca
    44941 ccagcggacc gacaatacga taatatgatg acgatccttc cgtacctaaa tcgcccagac
    45001 gggtggaaat ataaggaaac gcgattacca caccaaccag gaatacagcc agagaaatca
    45061 atgctaacgg taactttttc ttaatcgcct ctttattcag atattgaaat gcccactcca
    45121 gcaaataaaa caggataaag gtcataaccc ctgaaaacga tccggataat attatccctg
    45181 cgagaatcat agcatctgtt ttaggcgttt tgataccaaa ctgtttgatg ctgagccaaa
    45241 ttgagattaa tgccagagcg aaaaatgccg gttcgaaata aagtgctgtc gtgcgcttgc
    45301 cgccgaattt aatgaaattc agcacatagc tgttgctgta aatcagatat ttcgaaatcg
    45361 actccataat actgctgcca ccggtgagga taatttgtgc catctccacc gccgccagcg
    45421 ccaccaccag cccgaccacc agataaaaga aacgtaatat cttgcgatgg ttgtgtggcg
    45481 aaattgtttt aaaacgaata ctccacacca tgccaataat gatcacaata tagacaaaca
    45541 gcatagttga agtgacgtat ttactggcat ccagcgactg accaaacaga tagttaaacg
    45601 ccgtgagtcc cgcgccaatc cctaaggcaa tcatcaattt tttaacgctg atgcgttcta
    45661 aaaacagcag taacaagaca ggtaaaaaag tgacgatggt gatggggaaa ctttcgccaa
    45721 gctgggcgat tttgacgtta accagcagat aaatcagcgg cagcaacagg tagctacaga
    45781 ttctgataga agttgacata ctcctccagc atctgttgtc cactgtaggc ggcgcggctg
    45841 cgttggctga actcagccag cgtggtacca aatatcgcct gcgcgatttc cggtttgctt
    45901 aactgcacca gttgcagcac ctcttcttcg ctgacggttt taccgccgga tttttgcaac
    45961 acttcccgcg ccgcatcgct atgggtggca atcaccggca cgccaatcga tagcgcctca
    46021 cacaaaatca gcgggtagtt atcgacgcga gaactgaata ccagcgcatc catctgattg
    46081 agcgcgctca tcagcttacg tttgtcggtt tcaaagccgt gattaaccac gttgccagcg
    46141 gtgaacggcg agaacttacc aaaggtatgc agttcgattt tgtcgcccag cgccatcatc
    46201 tcacgcacca gttgctggtt agttttgccg tcgtaacgca ggtcatgcgc caccacagcg
    46261 attttcggct tgccctgggt ttcgcgcacc ggaggcagat ccgccagaat cgcttcggtt
    46321 gccatatcaa taccattatt gataatccgg caacgccctg gaccgtacag gctattgaaa
    46381 gcgtcagcca catgctggct gggggaaata aactgacagc ccagcgccag catctcacgg
    46441 aataactggc gtttgcccgc caccagctgg tgcgcccgat caatcttcac cggcggatag
    46501 ttatttaagg tcgggcattt ctggcagccc gttttccagc cttcacaacc gtcggtaaag
    46561 gcgcagcgtc cggtaacgct ccagtggtcg tgcagcgtcc agaccagagt gacgtccggt
    46621 ttatggtttt tcaccttttc gcaaaagcgc accacgctct taagatttag ccagtagctg
    46681 tgcagcacat gaaaatgcag gaccaccgga cccggtgtac gagtaatggt gcgatataac
    46741 tcattgaaat tgccaaacag atcgcgatta aacagacgaa acaggacaat attcgccatt
    46801 gcagtcatcc gcggcgtatg tttgatgacc tgcggatagt tttgatggct gacgctctct
    46861 ttgccgcctt tgccgtaacc gtagacaaaa tgtgacgcaa gcccctgttg cagcgcacgc
    46921 tggtggagat ctaacgccac acctgctgcc ccgccttccg ccagtcgcac attaaattgc
    46981 aaaatattca tttaattacc ttcactcgcg ctttttctcc caccaccagc gcgttgtccg
    47041 ggacagagtc gagcaccacg ctgcccgcac ccacggtgac gttgttacca agcgtgatat
    47101 caccaagaat aataacgttg gcaccgagtt cgacgccgtt gccaatatgt ggacatgcca
    47161 tgttatcggc accacgattg ccgatagtga cgccgtggcg aatggtgaaa tcatcccccg
    47221 ccaccacgtt tttattgatc actacggcgt aaccgtgatg gatagtaaag cggcggccaa
    47281 tggtcgcggc agcctggatt tcataaccga aaaagcattc ggtgataatg cgatacagca
    47341 ccagcagagg ggccgcccaa atattgttga ggacgttctt tttgcgccac accgaacaaa
    47401 aatgagcgac gcgatacgct agaaccatgc agcacggacg taaactccag ctgttggcgc
    47461 gcagatcttc cagcatcttt agcgcccccg aataccatca gccagacgtt tgccgttacg
    47521 caccgacagc agcgtcagca aagtgcgcca ggtcatacgt ttattgcgga tctggtagag
    47581 ggtaaacagc tgatattttt tgctggcgcg gtcaaatttg tctttgtgct tgcggtaaaa
    47641 gtggaagtat ccggagaatt ttttcggtga cgaggtgatc tgcatttcac cgtgattgat
    47701 atgcaggatc tgcgtcgcct cttccacttt ccacggttcg ccgtactcca ccaccatccg
    47761 caggaagatg tcgtaatcct gtgccgcttt cagttcggta tcgaacaaac actctttgaa
    47821 acgccatgcc caggtaaaga cctgattgcc aatgatattg cgtttataga acaggcggcg
    47881 tgagtacggc gatttgggat acagtggtaa gcttgccggt tgggaataaa cttctccctg
    47941 gcaaacgtag tcgttagcgt acaaaaaggc gtgagtgacc agttgctgtt tatgggcgag
    48001 gaagacgctc agacggttgg gtgtccattc atcatcatca tcgatcccgg taatgtattc
    48061 cccttgcgcc agcataatag cctggttacg taccgcgcac gccccgctgt taatgtcgtt
    48121 gtgaatgtaa gtgatacgcg gatcgttgag ggcggtgacg tactgttgca gttgttccca
    48181 ggaggtggag caatcatcca cgatgatcat ctcccagttg ctgtagtcct ggcgcaagac
    48241 cgattttatc gcccgaatcg ccagttgttg gcggttccag gtcggcatat agattgagat
    48301 cagcggattg tctttcatag gttgttctcc cggagtgtcg agatgttctg ccggtttata
    48361 agcttgttta cgggttctgt tgccggatgc ggcgtgagcg ccttatccgg cctacggagc
    48421 tggtttgctt gccggatgcg gcgtcaacgt aggtcggata agatgcgtca gcatcgcatc
    48481 cgacaacgga tctcgttatt tcgcatccga cttatattcg tattcgtaat agccataatc
    48541 ctgatacgcg ctggcgcggc ggaagatgga gttcagaatc acccctttca ccggaatacc
    48601 gttttgctca aagcggctca gactggtttc cacttctttc aatgtgttga ccgcataacg
    48661 cgccaccatt aatgtggttc cgacatgacg accaacaatt gccgcatcgg tcactgccag
    48721 aatcggcggc gtatcaatca acaccaggtc atagttttta ctcgcccagt tcaccagttc
    48781 ggcaaagcgt tcgctcatca acagttcaga aggatttggc ggcacctgac cgcgcgggat
    48841 caggtcaaat ttggcaatag aggtcggttt agctgcggta gtaatatcgc cctgaccaat
    48901 cagaatttcc gacaggccat tgacgttatt ggtgcccaac agctcgtggg tgtagccttt
    48961 gcgcatatcg cagtcgatca acaacacgcg tttattggtc tggctgatca ccgccgccag
    49021 gttggcgcag acaaaggttt taccaattga cgggctaacc ccggtcatca tcaacacatt
    49081 gttctgtgcc tgcatcatcg cgaagtgcaa actggtacgc agactacgga tggcttcaat
    49141 cgccagatcg gttggattcc ccaccgccag tagctggctc tgtttatagc gtttaatccc
    49201 tttgatggtt ttgacgctat cacgcgcttt ctgccattcc gacagcggga tgctggcata
    49261 gacgctaata ccgtgttctt ccagtacttg cgggctttca atgccgcgat taaacaacga
    49321 gcgcagcagc acacccacga tagaaagcat caggccaagg ataatcgcgc cgaggataat
    49381 cagccctttc ttcggtttta gcacgccagg ctgggtgatt gccgggtcaa caatgcgcac
    49441 atcgccgacg gtgctggctt cggtgatttt cagctcctgc tctttattca gcagttgcat
    49501 atagacctgc tgaccagact cgacatcgcg ggtcaggcgc acaatctcct gctgggtttt
    49561 cggcatcgcc gttacgcgac cgttaagttt ggctttctct tcttccagcg cctgacgttt
    49621 ctccagcagc gtgcggtacg ccgggtgaac tttggtgtac agcttggaga tttccgcctc
    49681 tttaaaggtc agttcgttca actgcgcgtc gatgttcacc atcgaatcga gcaccgcttt
    49741 cgcttccagc ggcagatcaa cagaatcttt atcctgacgg aaggcattca gtttgttttc
    49801 ggcaacatcg aggcggctac gtacttccgg taactgttgc gcgaggaaag cgaggctttt
    49861 cgacgcttcc gccgatttgc gctcaatatt ttgttcctga tagttacggg cgatgctgtt
    49921 aagaatgtcg cggatctgtt cgcgatcttc accggtataa gtcaggctca gtacgcctgc
    49981 gtctttgccg ttctccgtta ccatcaggct gttttgcagt tggttgatca tccccaacgt
    50041 ggagtatttg gtgacggtaa actcactgcc cgggcgggcg tgaatggctt caaccatcag
    50101 cgtgacgcct tcttttttca gcatctggcc cgcttgccca cgggcgctaa agccgccatc
    50161 actgctcagg gtgtagtttt tattgtccag cacattaagc gtaaacacct agtccgccat
    50221 ctctttcggg cggttaaagg tagtcacttt caccgtctcg ttctggcgtc ccatcagtcg
    50281 atcccagccc gccccgaaaa tcgggaacgt gtttttgctc actgcaatat cgaggtcgag
    50341 atcgtccacc gttttaccaa gcaccagacg cgaacgaatc aactggatct cggcgtccga
    50401 tgcaggcggt ttgttggcta atgccgaacc aatgtcctgc actaacgaat tgccgctgtt
    50461 ttgctcgatt tgtaccagtg cgtcggcact ataaatcggc gtggcgaaga aggtgtaaac
    50521 cacggcacag aggacaaata cagcggtgat gccaatcacc caccagcgcg cttcaatgac
    50581 ggtgccgacc aggcgaccaa tatcgatttc atcactgccc gttaccggag cggcatgttg
    50641 ttttactttt tctgtcattc ttatacctgc tctgcgttca atgcctgcgc ccactggcgg
    50701 gcagaccgtt caagtaatgt gtacaccgct gcaaacgttt cccagctttt gcgatacgga
    50761 tcggggattt cacattcgtt atcccagtga ccaaacagca tcactttgcc gcgcatctca
    50821 ggtgccatct cgcataagcg ttcgatatgg cgcttttcca tggtcaaaat caggtcatag
    50881 ttgcgacaca ggcggcggct gatttgtcgt gcacagtggc cttccagaga cagttgatgt
    50941 tctgcggcga cgctgatagc ggtaggatca gcgcccttac cgaccagcgc gccgagtcca
    51001 gcggactcca ctttcagttc cgggtgataa cgttgcagta agcgttccgc cgtcggggaa
    51061 cggcaaatat tgccgacaca gacaactaat atgttgttaa acatgacgat taccagttat
    51121 gaatgtcgct ggctgtatcc gtcatgtaac ggacaccgct aatagttggc agcaactgat
    51181 tgatcagacg gttccagcgg gaaaccgggg cggtggtgac atacaccacg tcataaggtt
    51241 gcaggcggaa ttctgtcgcc atcaccagcg acgtggcatc ggacatatcc agctggtaga
    51301 tattggcaat cttgccgtta cgcccgccct cgcctttcag cggacgaatg acaaagatgc
    51361 cgctggcgtt ggaggtggtc atgtcgatac cttcagcatt acccagggct tcagtcaggg
    51421 tcatgccgct aaagtccatt ttcagggtgc tctgtttctt cacttcaccc atcacaaata
    51481 ctttcagatc atcattacgc ggcacgtaga gaatatcgcc gggataaagc agtcggttct
    51541 gattgaggtc gccgttttgc atcagcacct gcaaagaaat gcgttcttca cgaccattgt
    51601 gtgttagcac cacgttgcgc cagtcagcgg tgtcggtcag gccacctgcg gcgttgatgg
    51661 cgtcgagaat ggtcagtggt acgttggtga tcgcctgttg accggattta ttcacctgac
    51721 ctgagatata ggtcttttgt gagcggaagg cggcgatatt aacgtccacc tgcgggtcag
    51781 cgatgtacgt cgctaagcgc ccggtaatat cactgcggat ttcagcgagc gttttcccga
    51841 ctacgtgaac cttgccgata tacgggtaaa acatagtgcc gtcaggctgt acccagttgc
    51901 cggtgtcgct ggagctgcgg tactgaccag ctggcgtggt gagttccggg tgatcccaga
    51961 cggtgacatt aagaacgtcc cccggcccga cgcgatactg gtaattcgcg atctcgcttt
    52021 ccagcgtcat attggggcgc gctacattcg gacgtgggcg taattggtca atcaggcgcg
    52081 gggtcagcgg ataaacattc accattttgt cgagatcgaa atcagcgtcc tgctgtttga
    52141 tgacgtcttt gcccatcgtc gacatattgc tgcccggaag tactgtgcaa ccgcttatca
    52201 aggttactga caccaataat ggcatcaatt tcattttgga tttcatcatt gtttatttat
    52261 cactttggca gagtaattat cctgtgcact attaatagca atgtcgccat gcacatttac
    52321 cttgcagtta attgaataca aatttaactg gcatcagtcc taaaaaaatt gatttcatcc
    52381 gcaggctatt gacagaataa ttcagactgg tctttcaggc atccagacac gctaccgccc
    52441 ctggcttttt agccaccaat acactgattt agcttaattt tttaaaccct ctctgcatac
    52501 aatcgttgat gagaaagggt tattgcggaa attaacttcc gaatataagg tgacattatg
    52561 gtaattgaat attggctctc caataatgca ggaggaagtg ttacagctaa cggaatagca
    52621 ggcaaggtaa caattcggca attggctatt tttaagaatt atattaagtg tcattcaata
    52681 tggtttttag gagtttcttt aggttgacaa tatttaatat tgcgcctccg catgcgatat
    52741 ttcttaaata atgttttatt attaccactt ttaattcagg gataatgtga ggttattacc
    52801 ctcaaataat atgagataaa tagtgctgca acattgcatt tttgccccga tttatccatg
    52861 atcgaattgt gacatttgtc atacaacgaa taggttttgt acttactatg gaatggattg
    52921 ccgatccgtc tatctgggcc gggttaatca cgctgattgt gatcgaactg gtcctcggca
    52981 ttgataacct ggtctttatt gccatcctcg ccgaaaaact accgccgaag cagcgcgacc
    53041 gcgcacgggt taccgggctg ttgctggcga tgttaatgcg cctgttactg ctggcgtcaa
    53101 tctcctggct ggtcaccctg acgcaaccgc tgttcagctt ccgctcgttt acctttagcg
    53161 cccgcgactt aatcatgctg tttggtggtt tcttcctgtt gttcaaagcc acgatggagc
    53221 tgaacgaacg gctggaaggg aaagacagca ataatcccac acaacgcaaa ggtgcgaagt
    53281 tctggggggt ggtgacacaa attgtggtac tggacgccat cttctcactc gactcagtga
    53341 ttaccgccgt cgggatggtc gaccatttac tggtcatgat ggccgccgtg gttatcgcta
    53401 tcagcctgat gttgatggcc agcaagccgt taacgcaatt tgttaacagt cacccgacca
    53461 tcgttattct ctgcttaagc ttcctgttga tgattggctt tagcctggtg gcagaaggtt
    53521 tcggcttcgt cattccgaaa ggctacctgt acgctgccat tggtttctcg gtaatgatcg
    53581 aggcgctcaa tcagttggct atctttaacc ggcgacgttt tctttccgct aaccagacgc
    53641 tacgccagcg gactaccgaa gcggtaatgc gcctgcttag cgggcaaaaa gaagatgcgg
    53701 aactggacgc cgaaaccgcg tccatgctgg tggatcatgg taaccagcag atctttaatc
    53761 cgcaggaacg gcggatgatt gagcgggtac ttaatcttaa ccagcgtact gtcagcagca
    53821 ttatgacgtc gcgccacgat attgagcata tcgatctcaa cgcgccggaa gacgagatcc
    53881 gccagttgct ggagcgaaat cagcatacgc ggctggtggt taccgacggt gatgacgcag
    53941 aagatttgct cggtgttgtt cacgttatcg acctgctaca acagtcactg cgtggcgaac
    54001 cgctcaacct gcgggtgttg attcgccagc cgctagtgtt cccggaaacc ttgccgttgt
    54061 tacctgccct ggagcagttc cgtaatgccc gcacacactt tgcttttgtg gtggatgagt
    54121 ttggctcggt ggaagggatt gtgacattaa gtgacgtaac tgaaaccatt gccggtaact
    54181 taccgaacga agtggaagag atcgacgccc gccatgatat tcagaagaat gcggacggtt
    54241 cctggacggc gaatggtcat atgccgctgg aagatctggt gcaatatgtg ccgctgccgc
    54301 tggatgaaaa acgtgaatat cacaccattg ccgggctgtt gatggaatat ttacagcgta
    54361 ttccaaaacc tggcgaagaa gttcaggtgg gggattattt gcttaaaacg ttgcaggtgg
    54421 aaagccatcg cgtgcagaag gtgcagatta ttccgctgca taaggatggc gagttggagt
    54481 acgaggtgtg atggtatcgg tcattttacc caatagccga aaggaataag atgagggaac
    54541 cgcgccagcg gcgatttacc gccgggagcc cgggttgcca gggtggtggc gattgagccc
    54601 ccctggcacg ttcaccggct tgagcgttcc atagtagcga ggaacatcaa gtgaacggaa
    54661 cagccttcga tcttacatat tcagaatata atgatgccgc cacgaacgcc tgatgcgacg
    54721 ctttacgcgt cttatcaggc ctacaggaca ggtcaccagg taacctacat cttctccagc
    54781 aacttcttca catctttgcc attgcgggaa tctttattcc gctcggccca gtcattcaga
    54841 cgacgtttcg cttcgtcctg tagatgtttg cgcagtaact gatccacttg cagactgtaa
    54901 ttgagttgct gccagttgcc ataaacccgc agcggtactg gcgtttcttt aaggaaatca
    54961 atcagtttgc tttccccgtt ccagccaccc acgacccgaa tatcaaactg ggtgtcgcag
    55021 gtttgctccg ccagattcaa cgtaccagcc ccggaaagcg ccagcacagg cgattgacct
    55081 tgcatgtcgt ttaacgtcac gacgccatcc ttcaacgtca aatcggtggt aaagcggtca
    55141 agacgcgtta cgttatcgaa gttttcagcg gccttcacat caccaccatt acgttctacc
    55201 gcttgctgaa tcatctgctg gaagttcatc ccttccatgc gcgtgtcggt catttcgaca
    55261 tgtgcctgtc cttgccagtt gtggcggaat gcgtcggcat ctatgtcagc accggagaaa
    55321 tcaccagcca gtgacatctt tccggtcaac gaaatcggat agttaaacgc cttcagaatg
    55381 gtgccaatct caacgttttc cagccgtggc tggaagttta tccgcggatt tattgatgtc
    55441 gcgtccagcg tgcccggcag tgaaacctgt ccaccgttaa gcttgccctg cagttgagta
    55501 atttccagca aacccgactt gttggtcatt tgcgtggcaa catctgtaaa attcattccg
    55561 cgccagcgca cgttactggc ctgcaacaaa atatcagccg taaagccttg cagtccctga
    55621 tatgccggtt catcaatacg cgaagaaatg accgggcgcg gcaacgttga ttggctctgc
    55681 ccctgctgcg cggcaccgtt ttcaccattc gctgtttcat taagcgggat gaggttgtca
    55741 agattcagtt gcgggaattg cagtctcagc tgccattccg gtttctctgt cagcgtgacc
    55801 tgtgcttgcc cgctcagcgt actgtcattg gcggtcaaac taatttggtt aaatgaaagg
    55861 cgtttatgtg actcctgcca ctgggcctgg aaactcccct gcccatgaat accttgtttt
    55921 ggtaaatctg caccctgcaa ctgccagtta atttgttcaa tagccgccgt taaatcatgc
    55981 ggataatcag aagcatctac cgtaccgtta agggatatcg tgagatcgcg ctgatcgcga
    56041 ttaacccgcc cggagaactc aaatgaacca cgatgttggg gatcttgttc catttgcagg
    56101 cgaatattgc ggattgtcac ctgctcgtca tcttcatgct ggaacaccag cacgctgtcc
    56161 gccaccttaa gactggatat atcaaacgac catccgcgat cgtctgacag atccggcaag
    56221 gtattgtcgc gcggtgcaac cggagcgtct tcactgcgca ccacttccgt ctgcggcgtc
    56281 agttggatca ctgccccttt tagcatcacc tgcttaacgc tcagttgatg actcagtagt
    56341 ggtaaaagcg ccacgtccag acgcatgttg tcggcgcgaa ccagtggctg gctcgcgccc
    56401 tgggcggtga gagacattcg cccggagagg atactaagct gcggccagac gtgccaacgc
    56461 agtggcccgt cgagctgcaa ttgataaccg ctacgtgcag caacttgctt gaccatatag
    56521 ttgcggaaat cattcggatt caccagcaac actaacgcag ataacccggc caccagcacg
    56581 accaggagta tcatcagcgt cgtcagaaat cgtctcatgg tatcctcaat gggcctgaat
    56641 tagtctttat cgattcggct ggctaccgcg ccctgctggt tgcgatattt cgcatcttca
    56701 cggcggttgt aaggtcgcgc cgccgggccg gaaagcggct caaagctcag cgcaccaatt
    56761 aacatgcccg gacgcagcgc cagcggcagc ttaccggagt tgtagaactc cagcacaatg
    56821 caaccagacc agcccggatc gatacggtgc gcggtgacgt gcaccatcag ccccagacgc
    56881 gccaaagagg aacgcccgtc cagccagccc accagatcgg ctggcagcgt caccgactcc
    56941 agcgtcaccg ccagcgccag ttctcctggg tgaagataga acgcctcgcc ctcgtcgaga
    57001 acgatctcat cgctcatcac gcggtcaagc gcggcgctca cttcatcttt gggaccgctc
    57061 agatcgataa acgctgccgt gtgaccacgg aaggtacgaa atttattgcc caggcgtaca
    57121 tccaccgtcg cgccgttaat acgctccact ggcggacgtg ggttgatcga caaacggcct
    57181 tcatcaagcc aggcttcaat atctcggtca cacagacgca tggcattttc tcctttcgcg
    57241 catcactccc ttaacgccaa ttacgtcaag ggcataccag gttatcactg aacggtacac
    57301 aatttatcaa gcttattcaa agaactgact tattttcgct ttcaatatat cgatcgcgat
    57361 gcggtttttc ccgccgcgcg gcacgataat gtccgcatat tgtttagaag gctcaatgaa
    57421 ttgcaggaac atcgggcgca cggttttttg atattgcgcc atcacggaat ccattgaacg
    57481 cccacgctcg ttaacgtcac gcttgatgcg gcgcatcagg cagatatcca gcggggtatc
    57541 aacgaaaatg gagaagttaa gttcgtcacg caaacgcgca tccgtcagca acaaaatgcc
    57601 ttcgagaatg atgaccttct tcggctcaac cgtcaccgtt tctttcatac gcgtatgttc
    57661 aacatagctg taaaccggca ggtcaattgc cgagccgcgt ttcaacgctt gtaaatgctc
    57721 aagcagcagg ttgtgatcca tcgcgctggg atggtcgtag ttggtcttaa cgcgttcttc
    57781 catcgacaga tggctttgat ctttgtaata gcagtcttcg ggaattacgc cgatgtgttc
    57841 atcaccgact tgctcacgta attcacgata aagggtactg gcaataagac tcttgccgga
    57901 agccgatgcg ccagcgatac cgataatgac gcactgatga gactgatcag tcatatattt
    57961 agcgacctga ttaacctgga tgttaggaag ggggcgacga agcgccaaac gcggcaatta
    58021 tagggatttc atccgcctga taccagtcga atagcgttgc cgcgcgctca gagttaattg
    58081 ttgacaaaga attcccggtg gcaaattacg ttgatcagtt ttatgtaagg taaaaaatgt
    58141 tatacgcagt tgcgcaaatt atccgccttt acgtcacttt atgagcaatt cacatataaa
    58201 atgtaaaact tttgtactag cataaacaca gaaacgaata ctggcgacct ggtcttgcgg
    58261 ataaagcggt aatgagcaaa caatcacagc atgtattaat tgccctgccc cacccactgc
    58321 ttcacctggt cagtttaggt ttagtctcgt ttatctttac ccttttctcg cttgagcttt
    58381 cgcagtttgg cacccaactc gccccactgt ggttcccgac gtccatcatg atggtggcgt
    58441 tttatcgcca tgccgggcgc atgtggccgg gaattgcgct gagctgctcg ctgggaaata
    58501 tcgccgcatc catcctgctt ttttccacca gctcgctgaa catgacctgg acgaccatca
    58561 atattgttga agccgtggtc ggggcagtgc tgctacgtaa attgctgccg tggtataacc
    58621 ccttgcaaaa tctggctgac tggctgcgtc tggcattcgg cagcgccatt gttccgcctc
    58681 tgttaggggg tgttctggtt gtcctgctga cgcccggaga cgatcctctc agggcatttt
    58741 tgatatgggt actgtcagaa tccatcggcg ctctggtact ggtgccgctg ggattgttat
    58801 ttaagccaca ctatctgctg cgccatcgca acccacggtt actttttgag tcactgctca
    58861 cattagccat cacgctgacg ttaagctggc tttctatgtt gtacctgccg tggcctttta
    58921 ctttcattat tgtgctgttg atgtggagcg ccgtgcgcct gccacgaatg gaagcctttt
    58981 tgatcttcct taccacggtg atgatggtgt cgctgatgat ggccgcggat ccctccctgc
    59041 ttgctacgcc gcgtacgtac ctgatgagcc atatgccgtg gctactgttt ttgctgatcc
    59101 tgctgcccgc caacatcatg accatggtga tgtatgcctt tcgtgcggaa cgcaaacaca
    59161 tttccgaaag cgaaacccgc tttcggaacg cgatggaata ttccgctatc ggtatggcgt
    59221 tagtgggcac cgagggacaa tggctgcaaa ccaacaaagc gctctgccag tttctcgggt
    59281 acagtcagga agagctgcgc ggactcacct ttcagcaact gacctggccg gaggatctca
    59341 ataaagatct ccaacaggtt gaaaagctga taagcggtga aataaacacc tattcaatgg
    59401 aaaaacgcta ctacaaccgt aatggcgatg ttgtctgggc gttgcttgcc gtctcactgg
    59461 tgcgccacac ggatggcacg ccgctctatt ttatcgctca gattgaagac attaacgagc
    59521 taaaacgcac cgaacaggtg aatcagcaac tgatggagcg catcacgctg gctaacgaag
    59581 cgggcgggat tggcatctgg gagtgggagc tgaagccgaa tatttttcga gctgtatgaa
    59641 attcctccgc atatcaaacc gaactggcag gtgtggtacg agtgcgtgct gccggaagat
    59701 cgccagcatg ccgaaaaagt gattcgtgat tcgttgcaat cacgctcgcc ctttaagctg
    59761 gaatttcgca ttaccgtaaa agacggtatt cgccatatcc gcgccctcgc caaccgggta
    59821 ctgaataaag aaggcgaagt cgaacgcctg ctcggcatta atatggatat gaccgaggtt
    59881 aaacagctta acgaggcatt gtttcaggaa aaagagcgcc tgcacattac gctggattcc
    59941 atcggtgaag ccgtggtctg tattgatatg gcgatgaaaa ttacctttat gaatccagtg
    60001 gcggagaaga tgagcggctg gacgcaggaa gaagcattag gtgttccgct cctgacggtg
    60061 ttgcatatta cttttggcga caacggacca ttaatggaga acatttacag tgccgacacc
    60121 tcacgttccg cgattgaaca agatgtggtg ttgcactgcc ggaacggcgg cagttacgac
    60181 gtgcattaca gtattacgcc gttaagtact ctggacggca gcaatatagg ctcggtactg
    60241 gtgattcagg acgtcaccga atcacgcaaa atgctgcgcc agctgagcta cagcgcctcc
    60301 catgatgcac tgacgcatct cgccaatcgc gccagttttg agaagcaact gcgtatcctg
    60361 ctgcaaacgg taaacagtac acatcagcga catgccctgg tgtttatcga tcttgatcgc
    60421 tttaaagcgg tgaatgacag cgccgggcat gcggcgggtg acgctttact gcgcgaactg
    60481 gcgtcgttga tgctgagtat gctgcgctcc agcgacgtgc tggcgcgact cggtggtgat
    60541 gaatttggtc tactgttgcc agactgtaat atcgaaagtg cgcgttttat cgctacacgc
    60601 attatcagtg ccgtgaatga ttatcacttt atatgggaag gccgtgtgca tcgggtaggt
    60661 gccagtgccg ggattacctt gattgatgac aacaatcatc aggcggcaga agtgatgtcg
    60721 caggctgata tcgcctgtta tgcctccaaa aatggtggac ggggccgggt gacggtttac
    60781 gaaccacagc aagctgccgc acatagcgaa cgggcggcga tgtcgcttga tgaacagtgg
    60841 cggatgatta aagagaatca gttgatgatg atcgcccacg gtgtcgcttc gccgcggatc
    60901 ccggaagcgc gtaatttgtg gctgatttca cttaagctct ggagttgcga aggcgagatt
    60961 attgatgaac aaaaatttcg tcgtagcttc agcgatccgg cacttagcca tgctcttgac
    61021 cgacgggtat tccacgaatt tttccagcag gccgcaaaag cggttgccag taaaggcata
    61081 agcatcgccc tccccctttc cgttgccggt ttgagtagcg ccacgctggt gaatgatctg
    61141 cttgagcagc tgggaaatag ccctctacca ccacggttat tacatctgat tattccggct
    61201 gaagcgattt tagatcacgc agaaagcgtg caaaaactgc ggctggtggg atgtcggata
    61261 gtgctcagcc aggtgggccg cgatctgcaa atcttcaact cgctgaaagc gaatatggca
    61321 gattacctgc tacttgatgg tgagttatgc gccaacgtgc agggtaattt gatggatgag
    61381 atgctgatta cgattattca ggggcacgct cagcgactcg ggatgaaaac catcgccggg
    61441 ccagtcgttt tacccttagt gatggatacg ctttctggca tcggcgtcga tctgatttat
    61501 ggtgatgtga ttgccgatgc ccaaccgctg gatttgctgg tgaatagcag ttatttcgcg
    61561 attaactgag agagcgtttg cccattgcct gatgcgacgt atcaggccta caattcgtcc
    61621 gttccgtctg gttgccagcc ttccgtatac cagatatgca acagcgcata agaacgccag
    61681 ggcttccagc gctcggcata acggcggatt tgtgccggtg tcatccccgg aaatcgctgt
    61741 ttaatcagat aatcatccgg cagaaaaaca tctttcgcct gccagccacg caaagcgaaa
    61801 taattcgccg tccagcgccc gatacccgga aaagtttgca gcgttttcat cgcctgctcc
    61861 acatcgcccg gaattgtcat tggtaagctg ccctccagcg ccgcatttgc cagatgaatc
    61921 agtgcctctg cccgtttcaa cggcatgcct aacgctttta atgcctgcgg gtcggctgct
    61981 gccagccgct gaggcgtggg gaagcagata tactccggaa aatcatccag ccgttcgcca
    62041 taaagctgta caactttggc agtcaatttt gccgccatcg ccacgctcac cagttggcct
    62101 aaaatcgccc gcacaccctg ctcaaaagca tcaatacagc cgggtaaacg caatccgggc
    62161 cgcgccgcgc ctaacttgcc caacgcaccg ttaacaatct gcgggttaca ttgcagatca
    62221 aacaggcggc tcattttcgc cagacactca gcggcaacgg gttctaaacc tgcacttaaa
    62281 tttatgtgca gagtatggcg ggctatatcc ggaatagcag tcaccacgcc gcgatattcg
    62341 cccaccgcca gactacgggc ataataatcg tcagcgaccg tttccacacc actcactgca
    62401 cgggcggcga gaaatcccaa catccacgac cagtcatacg gcggctgcca gttcagggta
    62461 tacatcgcat ctccttattc atccgctttc agcataaacg ttattcagac gctacgcttt
    62521 gctttcatat tccggttgtc gcgacggcaa catttcgcta aagtcacgcc ccttcttcac
    62581 cggcatgggg attatttcgt gtttattggt tttgattacg gtacagcaaa ctgttcagtg
    62641 gcggtcatgc gtgacggtaa accgcacttg ctaaaaatgg aaaacgacag cacgctgctg
    62701 ccttcaatgc tttgcgcgcc aacgcgtgaa gcggtaagcg aatggctgta ccgccatcat
    62761 gacgttccgg cagacgacga tgaaacgcag gcgttgttac gacgggcgat tcgttataac
    62821 cgcgaagaag atatcgatgt tacagcgaaa agcgtgcagt tcggtctttc ctcactggca
    62881 cagtacattg atgatccaga agaagtgtgg tttgtgaaat caccaaaatc gttcctcggt
    62941 gccagcggct taaaaccgca gcaggtagcg ctgtttgagg atctggtctg cgcaatgatg
    63001 ttgcacattc gccagcaggc gcaggcgcag ctgccagaag cgattactca ggcggtgatt
    63061 ggtcgcccga tcaacttcca ggggctgggc ggcgatgaag caaacgccca ggcgcaaggg
    63121 attctggaac gcgcggcgaa gcgtgccgga ttcagggacg tggtattcca gtatgagccg
    63181 gtcgcggctg ggctggatta cgaagccacc ttgcaggaag aaaaacgggt gctggtggtg
    63241 gatatcggtg gtggtacgac tgactgttca ttgctgctga tgggaccgca gtggcgttcg
    63301 cgtctcgatc gtgaagccag cctgctgggt cacagtggtt gtcgtattgg cggtaacgat
    63361 ctggatatcg ccctggcgtt taaaaacctg atgccactgc tgggtatggg tggcgaaacc
    63421 gaaaaaggca tcgccctgcc gatcctgccg tggtggaatg cggttgccat caacgacgta
    63481 cctgcgcaga gtgatttcta cagtagtgcc aacggtcgtc tgcttaacga tctggtacgc
    63541 gatgcccgcg aaccggaaaa agtggccctg ttacagaaag tctggcgtca gcgtttaagc
    63601 tatcgcctgg tacgcagcgc agaagagagc aaaatcgccc tttcaaacgc tgcggaaacc
    63661 cgcgcctcac tgccgtttat cagcgatgaa ctggctacgc tgattagcca gcaagggctg
    63721 gaaagcgccc tcagccagcc actggcgcgg attctggaac aggtgcaact ggcgctggat
    63781 aacgcccagg aaaaaccgga cgttatatac ctgaccggcg gtagcgcccg ttcgccgctg
    63841 attaaaaagg ctctggcaga acagttgccg ggcattccga ttgcaggcgg cgatgacttt
    63901 ggctccgtca ccgccgggct ggcacgctgg gcggaagtgg tatttcgtta aaagaaaatg
    63961 gctcagcagc ggcttaaatc tgcctgcgcc tgagccagtt tttctgccgc ctgacgtaac
    64021 ggttccatca acggcatggt ccgtgctgga gcataaaggc ggaatcgctg caactctgtc
    64081 gcgccgacag tcaacgccga ttccagccga tgtcgtttgg cggccattac cgcctgtctg
    64141 tctgctggcg ttaccgcttc gttcggcctg aacacaaaac ggcggtcaca gctcgctttc
    64201 cagtcgataa ccgcctgggt cagatggtcg ccaaaccctt taacttgctt aacgccacga
    64261 cgggtaacat ccgctgctgt ttcaatacca aaagaccgta acgccgcttt acgcgcaggg
    64321 ccaacgccgg gaatagaggc aaaaaatccc tccagaaact tctgcttctg ccgttccctt
    64381 gcggtgtcat aaagtgctgc cagagcgcgt ttctcctctt ccggtaaccc gagaatttcg
    64441 tccttcattt tttcgagcat cgcccgtttg gcgataaaac cttccagccc gcccaactgt
    64501 tggatctggc tgactaaatg ctcatagtcc attttcgcgc gattaaatgc ctcacggcgt
    64561 tgctggattt ctgctttgta cgctttgctt gtcagactgc caataatcca gatagccgac
    64621 agcacaggaa ccaaaataat ataacgcggt tctgcctgaa ggccgcaaag caacagcgat
    64681 aacgctgaca gtgcgatctc aatcagaatg atgtattcgc gccgtaacag gcctaaagga
    64741 agcggcctgc cagtcggttg gaaatgatcg ggtaatggca attgcaatgc tggcggtgct
    64801 actgacgcca tcaccatcgc ccagactttc gccagcacaa aatcaccgct ggtggtaatg
    64861 acctcttcac cgagatcaac aaaatagata acgccttgat tatccagcgt acaccacggg
    64921 cagtcggtca aatgagcggg ataaacatgc attgccgaaa cgggacattt ctttaactgt
    64981 tggcgcagag aatcaagtgc cgctacccac gctttagccg tcggacgccc ggttgccacg
    65041 ccactttccg tgaatgcctg ctgaaacatg gcttcaacat cactcggtaa catcgatagc
    65101 ggaatcgatc gtggcggcgg ttttaaacca cgtcgctgat tatctgacgc gtaggcataa
    65161 cggaaatggg taatatccgt ctccagcgca ttacccgcat cagagataag cggcacacca
    65221 gaataaggat gccggccacc aaacaagacg tgaaaaatca gcaacgcaag gccaaaatta
    65281 tcgtgatttt ctgtgcgttc aaagccgaca aatgacgaca aggtttgtag ctctggcggc
    65341 gtaaaatgcg acacgccgac ttcgcataaa tgcagtgtgc cattgacgtt aatctgaaag
    65401 gagtcgctat caatcagtac cactttgctg tcgcgaccta ccataaaact gttctggttt
    65461 acgtcaccca cgacgtgccc gtgctcgtga accgtagcaa aagatgaagc aatattgcgc
    65521 gcaacataga gtagaaaatc ccacgcacaa tgagggtaac tctggcgacg atgtgccggg
    65581 ctatagatca tatgaatcgg ttctttacca gaaacttttg gcatcataaa accgataact
    65641 tttccgcctc gtccaccgtg aagcgttgcc tgcggccagg cgacataatt caacaactgc
    65701 gcgtcagctg tcgcagccat aaaggcaagt ttgtcctgtt ttgaggcggg tggcggcgtg
    65761 tgataaatct tggcgacgct atcgacaaac tcctcgatat cataaaccgc gccttcaccg
    65821 cctttgccca gttcacggcc tggcgtaacg cactcaccag tagcagtata taaagtgggt
    65881 ttcatggtaa ccacagcgcc agtgccaacg ttttatcatc atccgtacgc tcgtttaccg
    65941 ccgggctgga caaaaactgc tttaacaatt caggtaataa atcgagttgt tcctgcgtta
    66001 ctgacgccag tccattgaaa aacggggtaa agaaaggcac atgaggagaa ttatccagca
    66061 tatttaacgc cagccgctga ataccatccg taaatgctgc aactttatgc gcacgcccag
    66121 tgctggtgaa agtttccagt ctggaaacgg catcttcgtc ggtaatgaag tgcgtcatgt
    66181 tggcatattc acccaccatc ggcgtgagag gcaattgcag accgtgaccc aaatctacca
    66241 ccacgccgcc atcgccaatc tgcataatca aggtgccgtc aggcgatgaa atcaatccca
    66301 gaaacgtgca ggcaaaatcg cgaactgcta atgctttggc ttctgcctcg gcaaaaagtc
    66361 gttgacgaat agtcagtacc atatttgtgg cgaggacatc attaagcccc aattcaccgt
    66421 cctgtacttt ttgcaccata aacgccatcg cttcattgac ggcgagcgtc gcgccttctc
    66481 ctccctgcga aacgctacct gcgccatcag caaggaacat caccagtaat ggttgctggt
    66541 cgtttaacca gacaacctgc atctggcagg catcctgaca aggcaaatca gcactaatgt
    66601 gcgatgttcc aacagcggat gcataaacca gacgccagct cacactgacg tccagccttt
    66661 tggcgcttcc agcacaactt ccgttcccgg cgtggagcgg gaaaccgaac gcagcgaact
    66721 ggataaccag ctaaacagtt cacggaattg taatccctgc agtggcaaag gctgacgaac
    66781 gctgatttgt gccagagtct tcatatccgc cccctgaaca ccgatggaaa agaaggcaaa
    66841 cttcttatct tcttccccct gaaacacttt gttggcggca gcctgccact catcggttgg
    66901 agcgccatcg gtgatcagga aaatccacgg gcgataatac gaaataccat ttgcgcggta
    66961 ctcacgtttc ctctcttcaa ccatatctag ggctttggta atggcggccc ccataggcgt
    67021 atccccctgg gcaaacagga tgggcgggaa aaagttagcg gcgctggtaa agggttgttc
    67081 cacatgcacc gggccgaacg tcacaatgcc gagttccact ctttttaaag ccagcggatc
    67141 agcaagcagt tcatcacgaa aggtaaccaa tccggcgtta agttcattaa taggtctgcc
    67201 gctcatcgag ccagaaacat ccagcagcaa aatgcagggg caacgtggtt ccgggttact
    67261 ggcaaaatcg ctggtggcaa acgtgatttg ttcgctcata agaaatcctt tcttagagaa
    67321 ttatcgaggt ccggtatcat accgattgca ataatgaaat aagagcaaac gaagaaactt
    67381 tcagaattag gcccgtcggc gcagaaaatt ttgctattcg cctcgcaaga acggagagcc
    67441 gtcgattgac actaagggcg gagtgacata atttcaggag tgagggttag ggagaggttt
    67501 ccccctcccc ctggtgttct tagtaagcct ggaagctaat cactaagagt atcaccagta
    67561 tgatgacgtg cttcatcata accctttcct tattaaaagc cctcttctcc gggagaggct
    67621 ttcccgtttc agcgtcccgc tgaaatcatc ggcttacctc ctttcgccct gaatgcagtc
    67681 tatcgctaac gcgtgaataa aatagtttcc tctgtgatta ttgcgtaacg actcgcaaag
    67741 aatatttgct ggcaggatcg cagactacaa agcctacgga ttgacaatct tatcgtgaag
    67801 gcatactttc aggagtgagg gtagagcggg gtttcccccg ccctggtagt cttagtaagc
    67861 ggggaagctt atgactaaga gcaccacgat gatgagtagc ttcatcatga ccctttcctt
    67921 atttaaggcc ccttcctcgg gaggggcttt cccgtttcag cgtcccgctg aaatcgtcgg
    67981 cttacctcct ttcgccctgt atgcagtcta tcgctgactt gcggataaaa tagtttccag
    68041 tgtgattatt gcgtaacgtc tcgcaaagaa tatttgctgg caggatcgca gactgcaaag
    68101 cctgcagatt gacaatctta tcgtgaaggc atactttcag gagtgagggt agagcggggt
    68161 ttcccccgcc ctggtagtct tagtaagctg gccagctaat gactaagagc accacgatga
    68221 tgagtagctt catcatgacc ctttccttat ttatggcccc ttcctcggga ggggctttcc
    68281 cgtttcagcg tcccgctgaa atcggcggct tacctccttt cgccatgcaa gcagtctatc
    68341 cctaacgcgt agataaaata gtttcctgtg ttattactgg atgcgtgctc gcaaatgtgc
    68401 ccgtcattca gacaattccc gacagtgttt cataattcct ccatttttct cccttattgg
    68461 ctggctacac tagtatcatt ccgcgaaacg tttcaggaag agaaactctt aacgatgaaa
    68521 ggcagttata aatcccgttg ggtaatcgta atcgtggtgg ttatcgccgc catcgccgca
    68581 ttctggttct ggcaaggccg caatgactcc cggagtgcag ccccaggggc gacgaaacaa
    68641 gcgcagcaat cgccagcggg tggtcgccgt ggtatgcgtt ccggcccatt agccccggtt
    68701 caggcggcga ccgccgtaga acaggcagtt ccgcgttacc tcaccgggct tggcaccatt
    68761 atcgccgcta atactgttac ggtgcgcagc cgcgtggacg gtcaactgat ggcgttacat
    68821 ttccaggaag gccagcaggt caaagcaggc gatttactgg cagaaattga ccccagccag
    68881 ttcaaagttg cattagcaca aacccagggc caactggcaa aagataaagc cacgcttgct
    68941 aacgcccgcc gtgatctggc gcgttatcag caactggcaa aaaccaatct cgtctcccgt
    69001 caggagctgg atgcccaaca ggcgctggtc agtgaaaccg aaggcaccat taaggctgat
    69061 gaagcaagcg tcgccagcgc gcagttgcaa ctcgactgga gccgcatcac cgcaccagtc
    69121 gatggtcgcg ttggtctcaa gcaggttgat gttggtaacc aaatctccag tggtgatacc
    69181 accggaattg tggtgatcac ccagacgcat cctatcgatt tagtctttac cctgccggaa
    69241 agcgatatcg ctactgtagt gcaggcgcaa aaagccggaa aaccgctggt ggtagaagcc
    69301 tgggatcgca ccaattcgaa gaaattaagt gaaggcacgc tgttaagcct cgataaccaa
    69361 atcgatgcca caaccggtat gattaaagtg aaagcacgct ttaataatca gaatgatgtg
    69421 ctgtttccca atcagtttgt taacgcgcgc atgttagtcg acaccgaaca aaacgccgta
    69481 gtgatcccaa cagccgccct gcaaatgggc aatgaaggcc attttgtctg ggtgctgaat
    69541 agcgaaaaca aggtcagcaa acatctggtg acgccgggca ttcaggacag tcagaaagtg
    69601 gtgatccgtg caggtatttc tgcgggcgat cgcgtggtga cagacggcat tgatcgcctg
    69661 accgaagggg cgaaagtgga agtggtggaa gcccagagcg ccaccactcc ggaagagaaa
    69721 gccaccagcc gcgaatacgc gaaaaaagga gcacgctcct gatgcaggtg ttacccccga
    69781 gcagcacagg cggcccgtcg cgcctgttta ttatgcgtcc tgtcgccacc acgctgctga
    69841 tggtggcgat cttactcgcc gggattatcg gttatcgcgc cctgcccgtt tcggcgctgc
    69901 cggaagtgga ctatccgacc attcaggtgg tcacgctcta cccaggtgcc agcccggatg
    69961 tcatgacctc tgccgttacc gcgccgctcg aacgccagtt cgggcagatg tctggcctga
    70021 aacagatgtc gtcgcaaagt tccggcggtg cgtcagttat cactttgcag ttccagctaa
    70081 cattaccgct cgatgtcgcc gagcaggaag tgcaggccgc gattaacgct gcgaccaact
    70141 tgttgccgag cgatctgcct aacccgccgg tttacagcaa agtgaacccg gcagatccgc
    70201 cgatcatgac gctcgccgtc acctcaaccg ccatgccgat gacgcaagtg gaagatatgg
    70261 tggaaacccg cgtcgcgcag aaaatctcgc agatttccgg cgtcggcctg gtgacgcttt
    70321 ccggcggtca gcgtccggct gttcgcgtca aacttaacgc tcaggcgatt gccgccctcg
    70381 gcctgaccag cgaaaccgtg cgcaccgcca ttaccggcgc taacgttaac tcggcaaaag
    70441 gtagcctcga cggcccttcc cgtgcggtca cgctttccgc gaacgaccag atgcaatccg
    70501 ccgaagagta tcgccagcta atcatcgcct accagaacgg cgcgccaatt cgtctgggcg
    70561 atgtcgcaac tgtagagcaa ggtgcagaaa acagctggct cggcgcgtgg gcgaacaaag
    70621 aacaggccat tgtgatgaat gttcagcgcc agcccggtgc taacattatc tccaccgccg
    70681 acagcattcg gcagatgctg ccacagctca ctgagagtct gccgaaatcg gtgaaggtga
    70741 cagtgctttc cgatcgcacc accaatatcc gcgcatccgt cgatgatact cagtttgaat
    70801 tgatgatggc tatcgcgctg gtagtcatga ttatctacct gtttttgcgc aatattccgg
    70861 cgaccatcat tcccggtgtt gctgtaccgc tgtcgttaat cggcactttc gcggttatgg
    70921 tgtttctcga tttttcaatc aataacctga cactgatggc gttaactatc gccaccggat
    70981 tcgtggtcga tgacgccatc gtggtgatcg aaaacatttc ccgctatatc gaaaaaggcg
    71041 aaaaaccgtt ggcggcggcg ctcaagggcg caggtgaaat cggctttacc attatctcgc
    71101 tgatcttctc actgattgcg gtgttgatcc cactgctgtt tatgggcgat atcgtcgggc
    71161 gactgttccg cgaatttgct attaccctgg cggtagcgat tttgatctca gcggtggtgt
    71221 cgctgaccct gacaccgatg atgtgcgcgc ggatgctcag ccaggagtcg ttgcgtaaac
    71281 agaaccgctt ctcccgtgcc tcggaaaaaa tgttcgacag gataatcgcc gcctatggtc
    71341 gtggactggc gaaagtgctg aatcatccgt ggctgacctt aagcgtggca ctcagcacgc
    71401 tgctgcttag cgtgctgctg tgggtgttca ttccgaaagg tttcttcccg gtacaggaca
    71461 atggcattat tcagggcact ttgcaggcac cgcaatccag ctcctttgcc aatatggccc
    71521 agcgacaacg ccaggtcgcg gacgtgattt tgcaggatcc ggcagtgcaa agcctgacct
    71581 catttgttgg cgttgatggc actaacccgt cgctgaatag tgcacgttta caaatcaacc
    71641 tcaaaccgtt ggatgaacgt gatgatcggg tgcaaaaagt catcgcccgt ctgcaaacgg
    71701 cggtagataa agtgccgggc gtcgatctct tcctgcaacc aacgcaggat ctgactattg
    71761 atactcaggt cagccgcacc cagtaccagt ttaccttgca ggccacctca ctggatgcgc
    71821 tcagtacctg ggtgccacag ttgatggaaa aactccagca actgccacag ctttctgatg
    71881 tctccagcga ctggcaggac aaagggctgg tggcgtatgt caatgttgat cgcgacagcg
    71941 ccagccgtct ggggatcagc atggcggatg tcgataatgc cctgtacagt gcgtttggtc
    72001 agcgactgat ttccactatt tatactcagg ctaaccagta tcgcgtagtg ctggagcaca
    72061 acaccgaaat taccccgggc ctcgcggcgc tggataccat tcgcctgacc agtagcgacg
    72121 gcggcgtggt gccgttaagc tcaattgcca aagttgaaca gcgttttgcg ccgctttcca
    72181 tcaaccatct ggatcagttc ccggtaacga ccatctcctt taacgtgccg gataactatt
    72241 cgctgggcga tgcggtgcag gcgattatgg acaccgaaaa gacgctgaat ctgccggtgg
    72301 atatcaccac gcaattccag ggcagcaccc tcgccttcca gtcggcgctg ggcagcactg
    72361 tctggctgat tgtcgcggcg gtggtggcga tgtatatcgt gctcggcatt ctgtacgaga
    72421 gctttattca cccgatcacc attctctcga cgctacccac cgcaggggtc ggcgcgctgc
    72481 tggcattaat gattgccggt agcgaactgg atgtgattgc gattatcggc attattttgc
    72541 tgatcggtat tgtgaagaag aacgccatca tgatgatcga cttcgcgctg gctgctgagc
    72601 gcgagcaagg catgtcgccg cgcgatgcaa tctaccaggc ttgtctgttg cgttttcgtc
    72661 cgatcctgat gaccaccctg gcggctctgc ttggcgcgct gccgctgatg ttgagtaccg
    72721 gggtcggcgc ggaactgcgt cgtccgttag gtatcggcat ggtcggcggt ctgattgtca
    72781 gccaggtgct gacgctgttc accacgccgg tgatttatct gctgttcgac cgcctggcat
    72841 tgtggaccaa aagtcgcttt gctcgccatg aagaggaagc gtaagtgaag ttttttgccc
    72901 tcttcattta ccgtccggtg gcgacgattt tactgtcggt tgccattacc ctgtgcggca
    72961 tactgggctt ccgtatgctg ccggtcgccc cgctgccgca ggtcgatttt ccggtgatta
    73021 tggtcagcgc ctcgctgccc ggtgcgtcac cagaaacaat ggcgtcttcc gttgccacgc
    73081 cgctggagcg ctcacttggg cgcattgccg gagtcagtga aatgacctcc agcagttcgc
    73141 tcggcagcac gcgtattatt ttgcagtttg attttgaccg ggatatcaac ggcgcggcgc
    73201 gcgatgtgca ggcggcgatc aacgctgcac aaagtttgct gcccagcggg atgcccagcc
    73261 gtccgaccta tcgcaaagct aacccgtcgg atgcgccaat tatgatcctc acgctgacat
    73321 ccgatactta ttcgcagggt aaactgtacg atttcgcctc gacgcagctg gctccgacga
    73381 tttcgcaaat cgacggtgtt ggtgatgtcg atgtcggcgg cagctcactg cccgccgtac
    73441 gcgtcgggct gaatccgcag gcgctgttta atcagggcgt ctcgctggac gacgtacgca
    73501 ctgccatcag caatgccaac gtgcgtaaac cgcagggggc gctggaagat ggcactcacc
    73561 gctggcagat ccagaccaat gatgagctaa aaaccgccgc cgaatatcag ccgctgatta
    73621 ttcattacaa caacggcggc gcggttcgtc tgggcgatgt ggcgacagtg accgactctg
    73681 tacaggatgt acgtaacgcc gggatgacca atgccaaacc ggctattttg ctgatgatcc
    73741 gcaagctgcc ggaagccaat attatccaga cggttgacag catccgggca aaattaccgg
    73801 agttgcagga aaccattccg gcggcgattg atctgcaaat tgctcaggat cgctccccca
    73861 ccattcgcgc ctcgctggaa gaagtcgagc aaacgctgat tatctcggtg gcgctggtga
    73921 ttctggtggt gtttttattc ctgcgctcgg gtcgcgcaac tattattccc gccgttgcgg
    73981 tgccggtttc gctgattggt acgtttgcgg cgatgtacct gtgcggtttc agtctcaata
    74041 atctttcgtt aatggcgctc accatcgcta ctggtttcgt ggtggatgac gccatcgtgg
    74101 tgctggaaaa cattgcccgt catctggaag cgggaatgaa accgttgcaa gccgcactgc
    74161 aaggtactcg cgaagtcggt tttacggtgc tgtcgatgag tctgtcactg gtggcggtgt
    74221 tcctgccgct gctgttgatg ggcggattgc cgggccgact gttacgcgaa tttgccgtga
    74281 cgctttctgt cgccattggt atatcgttgc tggtttctct gacattaacg ccaatgatgt
    74341 gtggctggat gctgaaagcc agcaagccgc gcgagcaaaa gcgactgcgt ggttttggtc
    74401 gcatgttggt agccctgcaa caaggctacg gcaagtcact gaaatgggtg ctcaatcata
    74461 cccgtctggt gggcgtggtg ctgcttggca ccattgcgct gaatatctgg ctgtatatct
    74521 cgatcccgaa aaccttcttc ccggagcagg acactggcgt gttgatgggc gggattcagg
    74581 cggatcagag tatttcgttt caggcgatgc gcggtaagtt gcaggatttc atgaaaatta
    74641 tccgtgacga tccggcagtg gataatgtca ccggctttac aggcggttcg cgagtgaaca
    74701 gcgggatgat gtttatcacc ctcaagccac gcgacgaacg cagcgaaacg gcgcagcaaa
    74761 ttatcgaccg tctgcgcgta aaactggcga aagaaccggg ggcgaatctg ttcctgatgg
    74821 cggtacagga tattcgcgtt ggtgggcgtc agtcgaacgc cagctaccag tacacgttgt
    74881 tatccgacga cctggcggca ctgcgagaat gggagccgaa aatccgcaaa aaactggcga
    74941 cgttgccgga actggcggac gtgaactccg atcagcagga taacggcgcg gagatgaatc
    75001 tggtttacga ccgcgacacc atggcacggc tgggaatcga cgtacaagcc gccaacagtc
    75061 tgttaaataa cgccttcggt cagcggcaaa tctcgaccat ttaccagccg atgaaccagt
    75121 ataaagtggt gatggaagtg gatccgcgct atacccagga catcagtgcg ctggaaaaaa
    75181 tgttcgttat caataacgaa ggcaaagcga tcccgctgtc gtatttcgct aaatggcaac
    75241 cggcgaatgc cccactatcg gtgaatcatc agggattatc ggcggcctcg accatttcgt
    75301 ttaacctgcc gaccggaaaa tcgctctcgg acgccagtgc ggcgatcgat cgcgcaatga
    75361 cccagcttgg ggtgccttcg acggtgcgcg gcagttttgc cggcacggcg caggtgttcc
    75421 aggagacgat gaactcgcag gtgatcctga ttatcgccgc catcgccacg gtgtatatcg
    75481 tgctgggtat cctttacgag agttacgtac atccgctgac gattctctcc accctgccct
    75541 cggcgggcgt tggagcgctg ttggcgctgg agctgttcaa tgccccgttc agcctaatcg
    75601 ccctgatagg gatcatgcta ttaatcggca tcgtgaagaa aaacgccatt atgatggtcg
    75661 attttgcgct tgaagcccaa cggcacggta acctgacgcc gcaggaagct attttccagg
    75721 cctgtctgct gcgttttcgc ccgattatga tgaccaccct ggcggcgctg tttggtgcgc
    75781 tgccgctggt attgtcgggc ggcgacggct cggagctgcg gcaacccctg gggatcacca
    75841 ttgtcggcgg actggtaatg agccagctcc ttacgctgta taccacgccg gtggtgtatc
    75901 tctttttcga ccgtctgcgg ctgcgttttt cgcgtaaacc taaacaaacg gtaaccgagt
    75961 aaatgacaga tcttcccgac agcacccgtt ggcaattgtg gattgtggct ttcggcttct
    76021 ttatgcagtc gctggacacc accatcgtaa acaccgccct tccctcaatg gcgcaaagcc
    76081 tcggggaaag tccgttgcat atgcacatgg tcattgtctc ttatgtgctg accgtggcgg
    76141 tgatgctgcc cgccagcggc tggctggcgg acaaagtcgg cgtgcgcaat attttcttta
    76201 ccgccatcgt gctgtttact ctcggttcac tgttttgcgc gctttccggc acgctgaacg
    76261 aactgttgct ggcacgcgcg ttacagggcg ttggcggcgc gatgatggtg ccggtcggca
    76321 gattgacggt gatgaaaatc gtaccgcgcg agcaatatat ggctgcgatg acctttgtca
    76381 cgttacccgg tcaggtcggt ccgctgctcg gtccggcgct cggcggtctg ctggtggagt
    76441 acgcgtcgtg gcactggatc tttttgatca acattccggt ggggattatc ggtgcgatcg
    76501 ccacattgct gttaatgccg aactacacca tgcagacgtg gcgctttgat ctctccggat
    76561 ttttattgct ggcggttggc atggcggtat taacccctgg cgctggacgg cagtaaaggt
    76621 acaggtttat cgccgctggc gattgctggc ctggtcgcag ttggcgtggt ggcactggtg
    76681 ctttatctgc tgcacgccag aaataacaac cgtgccctgt tcagtctgaa actgttccgt
    76741 actcgtacct tttcgctggg cctggcgggg agctttgccg gacgtattgg cagtggcatg
    76801 ttgcccttta tgacaccggt tttcctgcaa attggcctcg gtttctcgcc gtttcatgcc
    76861 ggactgatga tgatcccgat ggtgcttggc agcatgggaa tgaagcgaat tgtggtacag
    76921 gtggtgaatc gctttggtta tcgtcgggta ctggtagcga ccacgctggg tctgtcgctg
    76981 gtcaccctgt tgtttatgac taccgccctg ctgggctggt actacgtttt gccgttcgtc
    77041 ctgtttttac aagggatggt caactcgacg cgtttctcct ccatgaacac cctgacgctg
    77101 aaagatctcc cggacaatct ggcgagcagc ggcaacagcc tgctgtcgat gattatgcaa
    77161 ttgtcgatga gtatcggcgt cactatcgcc gggctgttgc tgggactttt tggttcacag
    77221 catgtcagcg tcgacagcgg caccacacaa accgtcttta tgtacacctg gcttagcatg
    77281 gcgttgatca tcgcccttcc ggcgttcatc tttgccagag tgccgaacga tacgcatcaa
    77341 aatgtagcta tttcgcggcg aaaaaggagc gcgcaatgaa gttctggcga cccggtatta
    77401 ccggcaaact gtttctggcg attttcgcca cctgcattgt cttgctgatc agtatgcact
    77461 gggcggtgcg tatcagtttt gagcgtggct ttattgatta catcaagcat ggtaatgaac
    77521 agcgattaca actgttaagt gatgcgcttg gcgagcagta tgcgcagcat ggcaactggc
    77581 gcttcctgcg caacaatgat cgctttgtct ttcagatcct gcgttcattt gaacacgata
    77641 attcggaaga taaacccggc ccgggtatgc caccgcacgg ctggcgtacc cagttctggg
    77701 tggttgatca aaacaacaaa gtgctggttg gtccgcgagc gccgattcca cctgacggta
    77761 cacggcgacc cattctggtc aacggtgcgg aagttggcgc ggtgatcgcc tcccccgttg
    77821 agcggttaac gcgcaatact gatatcaatt tcgataaaca acagcggcaa accagctggt
    77881 tgattgtcgc cctggcaacg ttactcgcgg cacttgccac ttttctgctg gcgcgcggtt
    77941 tactggcacc ggtaaaacga cttgtcgatg gcacgcacaa actggcggcg ggcgatttca
    78001 ctacccgcgt aacgcccacc agtgaagatg aactgggcaa actggcgcaa gacttcaacc
    78061 agcttgccag cacactggag aaaaaccagc aaatgcggcg cgattttatg gccgatattt
    78121 ctcacgaact gcgtacgcca ttagcggtgc tgcgcggtga actggaagcc attcaggatg
    78181 gcgtgcgtaa attcacgccg gagacggtgg cgtctttaca ggcggaggtc ggtacactga
    78241 ccaaactggt tgacgatctc catcagttgt cgatgtctga tgaaggcgct ctcgcctatc
    78301 aaaaagcacc ggtagatttg atcccactgc tggaagtggc gggcggcgca tttcgcgaac
    78361 gattcgccag tcgtggcctg aaactgcaat tttccctgcc agacagtatt accgtatttg
    78421 gcgatcgcga ccgtttaatg cagttattca ataatttact tgaaaacagc ctgcgctata
    78481 ctgacagcgg cggcagcctg aaaatctctg ccgagcagca cgacaaaacg gtgcgcctga
    78541 cctttgccga cagtgcgcca ggtgtcagtg acgagcagct acaaaaatta tttgaacgtt
    78601 tttatcgcac cgaaggttcc cgcaaccgcg ccagcggtgg ttccgggctg gggctggcga
    78661 tttgcctgaa cattgttgaa gcacataatg gccgcattat tgctgcccat tcgccttttg
    78721 gcggggtaag cattacagta gagttaccgc tggaacggga tttacagaga gaagtatgac
    78781 cgaattacca atcgacgaaa acacaccacg tattttgatc gtggaagatg aaccgaagct
    78841 ggggcagttg ctcattgatt atctgcgtgc tgcgagctat gcgccgacgc ttatcagcca
    78901 cggcgatcag gtactgccgt atgtgcgcca gacaccaccg gatctgatcc tgttggatct
    78961 gatgctccct ggcaccgatg gcttgacgct gtgccgggaa attcgtcgtt tttctgacat
    79021 tcctatcgtg atggtgacgg caaaaatcga agagatcgac cgcctgctcg gactggagat
    79081 tggcgcagat gactacatct gcaagccgta cagcccacgg gaagtggtag cgcgcgtcaa
    79141 aaccattttg cgccgttgca aaccgcagcg cgaattgcag caacaggatg ccgaaagccc
    79201 gttgattatc gacgaaggtc gttttcaggc ttcatggcgc ggtaaaatgc ttgacctgac
    79261 acctgcggaa tttcgtctgt tgaaaacgct ctctcatgaa ccaggaaaag tgttctcccg
    79321 cgagcaattg ctcaatcatc tttatgacga ctaccgcgta gtaaccgacc gcaccattga
    79381 cagccacatt aaaaacctgc gccgcaagct ggaatctctc gacgccgaac agtcatttat
    79441 ccgcgccgtt tacggcgttg gttaccgctg ggaagccgac gcctgccgca tcgtttagtt
    79501 ttagcgacat gactttgtta gccggagatg gcgttcagac cagatccggc aacattatcc
    79561 cacgcatggt cagcaaactg acattatctc tccgccctgg caggcatcag aaaatcgctc
    79621 atactttaat cggtaaacag cacctttaga tgctgttttc gatacgcaat ttcaatcaag
    79681 gagtcattat ggctggttgg tttgaactca gtaagagcag tgataatcag ttccggtttg
    79741 tgctaaaagc gggcaatggt gagactatcc tcaccagcga gctgtataca tcaaaagcct
    79801 ctgcggaaaa gggcatcgcg tcagtgcgta gcaacagccc gcaagaagaa cgctatgaga
    79861 aaaaaacggc aagtaacggc aaattctatt tcaatctgaa agccgccaat catcaaatta
    79921 tcggctccag ccagatgtac gccaccgcgc aatctcgtga aaccggaatt gcctccgtta
    79981 aagccaatgg cacaagccag acggtgaaag acaatacgta attacgatgc cgggcgtggg
    80041 ttgttggcgt ccggctttat tttctctcat cacagagtta ctatccctca agaaattatt
    80101 aaccatgaaa tgagttttct cctcataact gataaggaaa attatgctca aaggattgcg
    80161 tacattattt tcacgcaggg ttttgtttaa cgtcgaaatg aataattctg ttgactgtga
    80221 attacttctc atccagcaac aactccaggc attgatagcc gaaccaggca attatttagc
    80281 acatgattgt gatctcaacg atactctggt tctttgccag cttacccatc atcacaatgg
    80341 atatatacga gaaaaggccg tgcagtatct ggggcacaaa gaggatgttg cggctataga
    80401 agaattatta cttgcagcta atgactgggt aaaagaggtt cgccttgctg caaccatagc
    80461 attacgtcat ttaatgaagg ataagaatgc agcggcattt gccgttaatc tacccatgat
    80521 acgtaacctt ctccaatgcc agcgttacga tcaccgtgca tttgtagacg agatacttag
    80581 atatttattg acagaaaata accgcccaca attaacgtat tggcttactt gccctgataa
    80641 aaagctctcc cgcgcggtat tacaaacgct gattgaatac ggttacttta atgatgaatc
    80701 ttcactgctt tcaatactcg ataaacccga tgagggtttg cgaatgctgg cgaccaccca
    80761 ctggctgcgt caacaattac cattaagcga agcggtatta actcgtctgt taaaagaccg
    80821 ctggccgcgt attcgacaag caacgttatt tagcctcact gaccgagcaa tagaaatgcc
    80881 tccggcgttg cacagcacat tactgctgga taacaatatg ttgatccgcc tacgcgctaa
    80941 aaatatgctt cacgaagtca tggatgttcc gcaattctgg cgtcatgttg tcacttctgc
    81001 ggaatatact ccctcacagc gacgggccgc tttatacggg ctggattcca ttcatgatcc
    81061 caatatttta aaactggcag aatggggatt atcacagaat gtattcccac tgcgtttagc
    81121 cgctatgcac attcttgcaa aagctaatcc tcgttgtggc gtcaaagaga ctattctgac
    81181 cacgctggct aacccggacg ccgccgggtt gcgatttatg gttaacatct gtgtatggtg
    81241 tcgcgttccg ctcacgttcg aggaaatacg tcagttgcag gaaaacgcgc cgtcagttaa
    81301 acatgcttgc gcatattgtc ggctgtatca taacttgaac aaatgggacg gtttaattct
    81361 tcttcttcaa tcgcaacaca agctaactga agaatttgca ggtaaacagc tcgcgatatg
    81421 gcaacgcaat ttcaatcttt cgggcattca accgaatgct cttcagcgtc agcaacttca
    81481 ggcgcttttt acccgcaatc cggaacttca caacagatta tggggttaca ttccttttaa
    81541 ataacttcga attatagact tacgatgaca aatgtacctg ctgacgagcg gaaccaaaac
    81601 gaaacaatac gtgaagcttt acgcttgcta cgagaaaaac ttgccgaggg actacgcagt
    81661 ggcgaagccc aaccgtggga aaaggatctg tttttacata aagtgaaggc cggtaacaaa
    81721 taaatccccc agtcttttcc ctcacatttg cactggagcc aaccccgccg attgcgctac
    81781 aatgcccgcc cttaaagtgg gggcactccc ctaaccgctt catcaggtga agcggatctg
    81841 acctgtcatc agaacgagag aattatgttt aaaccggaac tcctttcccc ggcgggaacg
    81901 ctgaaaaata tgcgttacgc tttcgcttat ggcgcagatg ctgtttatgc gggccagccg
    81961 cgttactccc tgcgtgtgcg caacaacgaa ttcaaccacg aaaatcttca gctcggcatc
    82021 aatgaagccc acgcgctggg gaaaaagttt tatgtcgtgg tcaacattgc accgcacaac
    82081 gccaagctga aaacctttat ccgtgacctg aaaccggtgg tggaaatggg gccggatgcg
    82141 ctgattatgt ccgatccagg gctgattatg ctggtgcgtg agtacttccc tgaaatgccg
    82201 atccacctct cggtgcaggc taacgccgta aactgggcga cggtgaaatt ctggcagcaa
    82261 atgggcctga cccgcgtgat cctctctcgc gaactgtcgc tggaagagat tgaagagatc
    82321 cgcaatcagg tgccggatat ggagatcgag atcttcgttc acggtgcgct gtgcatggcc
    82381 tactccggtc gctgcctgct ctctggctat atcaacaagc gcgatccgaa ccagggtacc
    82441 tgcaccaacg cctgccgctg ggagtacaac gtccaggaag ggaaagaaga tgacgttggc
    82501 aacatcgtac acaagtacga gccgatcccg gtgcaaaatg ttgagccgac gctaggtatc
    82561 ggcgcgccaa ccgacaaagt gtttatgatc gaagaagccc agcgtccggg cgagtatatg
    82621 accgcgtttg aagatgagca cggcacttac atcatgaact cgaaagatct gcgcgccatc
    82681 gcccatgtag aacgcctgac caaaatgggc gtgcattcgc tgaaaatcga aggccgtact
    82741 aaatctttct actattgcgc acgcaccgca caggtttatc gtaaagctat cgatgatgcc
    82801 gctgcgggca aaccgttcga taccagcctg ctggaaactc tggaaggtct ggcgcatcgt
    82861 ggctataccg aaggtttcct gcgtcgtcat actcacgacg attatcagaa ctacgaatac
    82921 ggttattcag tttctgaccg ccagcagttt gttggtgagt ttaccggtga gcgcaagggg
    82981 gacctcgcag cggtagcggt gaaaaataaa ttctccgttg gcgacagcct tgagctgatg
    83041 acgccgcaag gcaacattaa ctttaccctt gagcacatgg aaaacgccaa aggtgtagcg
    83101 atgccggtcg caccaggcga tggttatact gtgtggctcc cggtcccgca ggatcttgaa
    83161 ctaaattacg cgctgctgat gcgtaatttc tccggggaaa ccacgcgtaa cccacacggt
    83221 aagtgattaa tttcgattat ttttcccgga tggaaaattc ttagaaaccg atcacataca
    83281 gctgcattta ttaaggttat catccgtttc gctgaaaaac ataacccata aaatgctagc
    83341 tgtaccagga accacctcct tagcctgtgt aatctccctt acacgggctt attttttatg
    83401 cataagccct atccctggtc accgtcttcc attgaccaca tcgatagaat ctcccttcat
    83461 agcacgatgc ctttcacgta acggcatcgt gctcgcacag gttccggcta agcacaacca
    83521 gaacgcgcat gtttgatgct taccaaaaaa tattctcact ctccacattt gaatgtcaga
    83581 cgagcgacac catgtaatcc tacaccttct gtcttcagct caactatttg catttttttg
    83641 ccctgagtaa cacagaaatg agttgcatca ttttttacta tattttctgc accagatatt
    83701 ctactcctgg ctaaagaagc ttcggcttcg gtgtagtatt ggttatcgag tttacgctga
    83761 atattacttt tatatgcaag accaaattta ccgatacttg tctcatcatt atgcacagca
    83821 caaccagaca taataaaaat actaattaat gatatagcag ctatcttttt catctcacct
    83881 ttccccatta aataccaacg acactctcta gtgtttaaat ataataatag ctgatcatta
    83941 tatttgaata ggattataat aaatgttctg tacaacattt cctacataag taggacttac
    84001 agacatgaag gccctttcca ggtaactcca tggggcttta atatatttgg aatagtatat
    84061 ttaagatgcc actgtttggt tgaatattag gcatatgctc ttttttgaaa tttatcggtg
    84121 gctaccgtta atattcgctg ttcccattgc aagctcctgg tggtaaccac tgaatcctcc
    84181 atacttgaac tgacttttta tcctccgact ttcatcctgt tctgactcca ccttttcttt
    84241 tctgctctac actatctaca gaccaatcat aaaggcacat acgatcatgg cagaatttcc
    84301 cgccagctta ctgattctta atggcaaaag tactgacaat ctacccttgc gcgaagcaat
    84361 tatgctgttg cgtgaggaag gaatgacgat ccatgtgcgg gtcacctggg agaaaggtga
    84421 tgccgcacga tttgtagagg aggcccggaa gttgggcgtc gcaacggtaa ttgccggtgg
    84481 tggcgatggc accattaatg aagtttctac ggcgttgatt cagtgtgagg gggatggcat
    84541 acccgcgctg ggaattttgc cattaggaac cgccaatgat tttgccacca gtgtagggat
    84601 tcctgaggca ctggataagg cgctgaaact ggcaattgcc ggtaacgcca ttgcgataga
    84661 tatggcgcag gtcaacaaac aaacctgttt tattaatatg gcgacaggcg gatttgggac
    84721 gcgtattacc acagaaacgc cggaaaaatt aaaagccgcg ctgggtggcg tctcttacat
    84781 cattcatggc ttaatgcgca tggatactct gcaaccggac cgttgtgaaa tccgcggtga
    84841 aaactttcac tggcaaggtg acgccctggt attggtattg gtaacgggcg tcaggccggt
    84901 ggcggtcagc aattgtgtcc gaacgcgtta attaacgatg gcttgctgca actgcgcatt
    84961 tttaccggcg atgaaattct tccggctctc gtatcaacct taaaatctga cgaagataac
    85021 ccgagtatta tcgaaggcgc ttcgtcgtgg tttgatatac aagccccaca cgaaatcact
    85081 tttaatcttg atggcgaacc gttgagcgga caaaactttc atattgaaat acttccggcg
    85141 gcgttgcgtt gtcgattacc accagattgt ccattattgc gttaatcaaa ctattctctc
    85201 ttgaaccagg gagaatccga aatgccggat gcggtgtaaa taccttatcc ggcatacaga
    85261 acaatactac accgtaatta attttacccg tgtcttctgc aatgccagtt tatccacctc
    85321 tgatacagca tcatcggtaa taataatgtc aattttttcg attggcagta cctgattaaa
    85381 accgcgacgg ttaaatttcg atgaatcgag aacggcaatc actttattag cggctgtgac
    85441 catcgcaccg ctaacggaat aaccctcatt aaaggtcgta ataccattaa ccgcatcaat
    85501 accatcagca ccgacaaaca ttaaatcggc attaatatcc tgcagggaac gttcagcaat
    85561 agatccatgc atagatcgcg ttttatggcg gaccgtgcca ccgcagacga ccagagtaat
    85621 gtctttattt tcggaaaggg caaacgctgc cgggagactg ttggtaatca ccgtgatatt
    85681 tttagcggtc attaatcctt cggcgataag cattgtggta cttccgctgt cgagaataac
    85741 ggtcatccct tcatggatca ttttgactgc cgcctgcgct attctgtttt ttggcgcgct
    85801 ggcgagctga aatcgctctt taaacccgac ttcctgggtc tcggtttcac tattaccgga
    85861 cattattttc gccgcaccgc catgaaagcg cgtaaccacg cctttttgtt cgagaaagcg
    85921 caaatcggca cggattgtcg cttccgaggc agcaaatact cccgccagat cctgaacaag
    85981 cacggttccc tgttcattca ctaattggat gatcttattc cttcgctcga atgaattcat
    86041 cgtcatttac ccatattcaa ttgtggctag tgtaaacgaa gggggaccat tggtgaatga
    86101 tctgttttgc acaataccgg gccagcatca cgctggcccg cggtttcatg gaatgagcaa
    86161 cactttgccc ggcatggcat tacgagcgat gtcacgcacc gcctgggtga agctttcaaa
    86221 gcttccacgg tgagcgatta atggctccag gcttaactta cgttctgtca gcaaccggct
    86281 cgccgtttcc cactcctgcc ccggccaagg gctggaatag ttcatccaac tgccgataac
    86341 cgtcagctct ttacgcaata ttttgccaaa cgttgccgat gttaaatgca gatcctgatg
    86401 caacgtgccc accagcgcca gttgggcatg aggaccggca atctctaccg ccagttcgac
    86461 agtttgcggt acgccagccg tctcgaggat aagctgatta aaacgcagtt cgcgtaaaac
    86521 gctctgcatt tgcggcgcgc tcatttcgct actgttaaat gtttgcatcg aaccgaaaga
    86581 ttttgccagt gccagttttt ctgagctaat gtcgatagcc gtcacactct ttgctcccag
    86641 cgcgacagcg cactgaatag ccagcaggcc aatggttccg gcaccaataa taataacgtt
    86701 tttattctca caaccttgcg ctaaatgaaa agcatgcaga ccaacggtaa tcggctcaat
    86761 aaaagcccca tcctcaatag gcatatccgt gggtagagca aagacatttt ttcgcttaac
    86821 gacaatatat tcagcaaatc caccatcacg ccgcgagcca ataaaatcat attttgcgca
    86881 ctgggaataa aaccctttca gacactctgg acaagtaaaa cagggtaata acggcacaca
    86941 ggcaaccgca tcgccagggt gtaaatcatc aacaccggat cccaccgcat caatatagcc
    87001 gctaaattca tggcctaacg ttattggata ataatgtgca ccatttttaa atatcctggg
    87061 taaatcggaa ccacataagc ccgagctggc aatttttacc cgcacctcat cctgatgttt
    87121 aatttcagga atgacgcttt ctgcaacgcg cacgatacca tcagtatcat tcaccactga
    87181 tttcataaaa actcctgatt gttaaggggg ataaactccc cctcagttaa aaattattct
    87241 gcgagaacgg ctttctcttg tttaataaaa ccacgcgctc tacgccaggt aatgaaaata
    87301 ccggtcagat aaattgcgcc gataataatg aaaccgggaa tattttgcgg ggagaaaacc
    87361 tgaatcagta accaggtaat gggagaaccg ccctgatcca ttgaagccac catacccccg
    87421 gcttttaacg ccccagcatt agccgccagt tgggtgtgca aaccaatagt ttgcgtcgcg
    87481 atccacagag tgatgctcat gatgatgaca cccgagatta aggtgcggaa cagatttcca
    87541 cgatgcacgg cgactgccat cgccacaaag aagccgatgg tggcaagatc gccaaacggc
    87601 agtacctgat tacccggaac acaaacagca attaaaatgg tgagcgggat aaaaatcagg
    87661 cttaccgata ccaccgccgt atgccccagc agtaatgcgg gatccaggcc aatcaggaac
    87721 tcctgaccgc cgaacttcgc ctgtaaacga ctacgggcct gcttagcgat gggcgttaaa
    87781 ccatccatga tgggtttaat cacccgtggc attagcagca tcactgccgc cgtttttacc
    87841 gccagctgca atacaccttt gacatcgtaa cccgcgagga tgccgataat cagccccatc
    87901 acaaaaccca cggtgacagg ttcgccaaaa gggccaaatt tgcgctgaat atcatcggcg
    87961 ctaaatttaa ttcggttaac gcctgggatt ttctcgatga tagcatcgac cagcaccgca
    88021 atcggcccca tatacgccga cgtaccgtgc ggaatagcaa taccttccag ctcaaagaaa
    88081 tttcgggtat cgcgggcaaa ccagtcgccg agcttataaa caaacgccgc gtgaattacc
    88141 acacccgcca tccctatcat ccatgaaccg gttgccagat gcagcaacgc gccggtgaaa
    88201 gtcatatgcc agatattcca gatatcaaca tttaccaccc gcgtcatacg ggtcagtaac
    88261 atcgccacgt taaccagaat agcaatcgga atcgccacca gcgcaatttg cgacgcccag
    88321 gtcattggtg aagagcccgg ccagccgaca tcgaccacat gcagattcag gtcgaaattt
    88381 tccgccatcg ctttcgccgc cggaccaatg gaatccagca ttaagccaat cacaaggcca
    88441 atgccaacaa agccaatccc tatatgaaga cccgctttaa agcaatcgcc tgccttcatg
    88501 cctaatattt tagaaaaaat aatgatgaca atcggcagca tcaccgtagg gccgaggtcg
    88561 agaatataac gcatgacttc tgaaaacata ggtcacccct gtaagatagt cagaatttta
    88621 ttttgtaatg cttcgatacc gacaccagaa acaaaaggca tgccgtgaac taacggaata
    88681 tcgccaaaac tacgatccac cctggcagta gtgcatatca aatgcacgcc atccatatag
    88741 gtttctattt cattaacccg acactggatt aattcaacag gaatattatg attctgacac
    88801 aattctttaa tttcttccgc cgccatcgta gaggtcgcaa ccgcgcctcc gcaagcgaca
    88861 ataatcttgc gtttcataaa tagtcctttt tattgttaca gagggattta ttcgtctgaa
    88921 tctaaaacat actttgtgaa gtattccttt aactgggttt caggaagagt gattagtgtc
    88981 tcgacgatat cgggctgttg taacttgcca aataaacagc gtaaaagttt caattgctgc
    89041 tgcggatttt ccacaatcaa cgcaataacc aacgatacct ccacgtcgtt atcatcatcc
    89101 gcttgctgaa aatgaacttt atttgttggc cttaacagat aaatggctga cgacttagca
    89161 tgaatcgcct cacaatgcgg tattgcaatg gcgtgctgct caagcattat cccggtaggg
    89221 aattctgctt ctctggcaat taatgcctgt ggccaggtat catgaaccac acctttggcg
    89281 agcatctcat taccgatatg ggttaaaact tcgctacgat cgacaaaaga aattccgcta
    89341 cgaacaaaca ggttagtcat ataccgtcct tattccgcac agccgtagcg ataggcgcgc
    89401 aaaacatcat aaattttatc cataatcagc taatgcggta ttgctgataa ttccccggac
    89461 tgaatgcgtt caaattgttt gggaagatac tgactaatca tgcccagtgg gatgtccacg
    89521 ccttcaagat tcaccatcat cgtttcgacg ctatttttaa tccgactatg cggccagtaa
    89581 taacgaatac gatccgacag gctgtaacga atatccagta atgaatcgtt aaaacccgta
    89641 cgataatatt ttttccagta ttgcggttcg tcgagcatca cttcttcaat taccgccagg
    89701 caaccgctgc gattttcagg ggcgataagt tcctgctcaa tttgtgccag tgcaaatatc
    89761 gcctcgcgta aagcaaaggt taatgcggga ccgactttca atattgcaaa gtgatcgcgg
    89821 actaattccc aataagccgt ccgggtctgg taatcggtag aatgtgcttc ataaaccatt
    89881 cgggtgtttt ctatccattg cgccagcggc tgcgcttcct gcggctgata atggataata
    89941 ttgctgtgat caaattccac gcccggctgc accacgatgg caatcacgcg tgttaacgcc
    90001 tctgtcagcc cacggacaat aaaggccttt tgatgcgtac gtaaagtatt ggcggcatct
    90061 tcaacatggg tgatgtgtac tgactgaatg gcgctggcct caccgcccgg aaccggaact
    90121 tcggtgccaa tgacatagct cagttgctca cgctggcaat ctgtcgccac actttccgca
    90181 gcaaagcaaa gcacagcagc tcgttccgca accgtttctg gtgctaacgg tatgggatcc
    90241 cccgcgcagg acattgacgc atcaagatga attttactga agccggcacg aacatattcc
    90301 tttaccagct cgacggattt ttccatcgcc gcatccgcat tttcttgctg ccagcagttt
    90361 ggccccagat gatcgccgcc gagaataatg cgttcgcgtg caaacccaac tttatcggca
    90421 atcgtaaaaa caaattcgcg aaagtctgcc ggtgtcattc cggtataacc gccaaattga
    90481 ttgacctggt ttgacgttgc ttcaatcagc actttgcgcg tgctgttgcg atcaaatgcc
    90541 agcgccgctt cgataaccaa cggatgggca gaacagactg aacatatgcc gatatgttca
    90601 ccagctttat gccgggcaat taacgttttc atgttttttc cttattaaat ggcaggtgcg
    90661 ttatgccctg ccctcgcagc cacaatcggc aatcactttg ctcaccacat cgcgcattgc
    90721 ggatttagcc gactgcaaat aatcccgggg ctcggtcgct tcagggtgct cggtcaggta
    90781 attttttaac gcctgcgaga aggcattttt cagctccgtt gcaacgttga ttttgcatat
    90841 ccccagtttg atggtttgct gaatatcctt agtcgataac cctgacgcgc catgcagcac
    90901 cagcggtaag ttcacccact ggcgaatgtt ctccagtcta gaaaaatcaa gcgccggtgc
    90961 gctggcatac atcccatgag ccgtgccgat ggcgaccgcc agggaatcaa ttccggttgc
    91021 ctcggcaaat tcacgcgcct gagcggggtt ggtataaaaa gcatcggctt cattgacttg
    91081 cacatcatct tcctggccgc caagttgccc cagctccgct tcgacgctga catcaaagcg
    91141 atggcaaaaa tccaccacct ctttgacccg tgaaatattt tgcgcaaaag gcaaatgcga
    91201 ggcgtcaatc atgactgagc gcacgccaga acgaaccttc tgagcgatat cgtcaaattt
    91261 cgtgtgatgg tcgagatgaa ttgccagtgg atggtgatat tgcttcgcca tcgcgctgac
    91321 cagcgccaac agattttctg taccagcatg agtaaatgtg ccaggcgttc cggcgatgat
    91381 gaccggcgca tgcaggttgg cagcggtttc caccaccact tgcatcgttt cgagattgtg
    91441 aatattgaat gccggaaccg cataaccgcc gcgctgtgcg ttgttcagca tctgctttgt
    91501 cgataccacg tgcattttca tatcctgtcg tttgttttcg ttttcaaaat ataatgaaat
    91561 tatttgtttt taaatatcga gataacgatc acaaaaacga caatatgaaa attattcgag
    91621 gagtgaaagg caaaaaaacg gcctcccgat agggaagccg tagcaaagtg cgcgtgtttt
    91681 tatgccggat gcggtgtaaa catacgtggc agtgctatgt aggcatgata agacgcttcc
    91741 gcgtcgcatc aggcataggt tgccggatgc agtgtaaacg ccttatccgt cctacggggt
    91801 ggtgttgttc gtataaggcg tatcaggcaa tagtaatttt gctatcgaga taaacgtcct
    91861 gcacggcgtt aatcagtttc acgccgtcag ccatcgattt cttgaacgcc ttacgtccaa
    91921 gaatcagccc cattccgcca gcgcgtttgt tgataaccgc agtacgcact gcatcactga
    91981 ggtcagtttc accgcctgca gcaccgccgg agtttatcaa cccagcccgg cccatatagc
    92041 agttagctaa ctgataacgc accagatcaa tcgggttttc gctggttaac ttgctgtaca
    92101 cgcgatcgtc ggtataaccg taattaatcg ctttatagcc gccgttattt tccgccattt
    92161 tttgtttgac gatatctgcg ccgatggttg ccgccagatg gtttgcctga ccggtcaggt
    92221 cggcggaaac atggtaatca acgccatctt tcttaaaggc ggagttacgc aaataggccc
    92281 acagcacggt caccatgccc agctcatgcg cacgttcaaa agccgcagaa atttcttcaa
    92341 tctggcgacg tgactcttcc gagccaaaat agatagtcgc accaaccgcc accgcgccca
    92401 tgttgaaagc ctgctccacg ctggcataca gcgtttgatc gtaggtattc gggtaactta
    92461 gcgtctcgtt gtgattaagt ttgacgagaa atggaatgcg atgcgcatag cgccgcgata
    92521 ccgacgccaa cacgccgtaa gttgatacca cacagttaca gcccgcttcg atcgccagtt
    92581 caacaatgtt tttcgggtca aagtagagcg ggttagcagc aaatgaagct ccggcagagt
    92641 gctcaacgcc ctggtcaacc ggcagaatag aaagatatcc tgtgccagcc agacgcccgg
    92701 tgttgtacaa cgtctgcata ttacgtaaca ccgctggcgg gcgattattg tcaatcatta
    92761 cgcggtctac gtagtcatgt ccggggagat aaagctggtc agaaggaatt gtcatacaac
    92821 ggtgctgtaa aaggttgtcg gcgtctttgc caagcaactg cgcaatatct gtcattacta
    92881 tgctcccgta aattccgatt ggatatcggc tatggattgt cctggcccgc cttttgcggg
    92941 caatcataat cctggtcgtt acgggcgagt ttttccatct tttggatgtt ttttcagcgt
    93001 tttctgttgg ctcgattcat cagaaaaaat gttagcgcgg tcaagttttc accgtaaaga
    93061 tatttaaaag gtattattaa gtggtattgt catcgcgtac cttacattac ctgtcatgaa
    93121 ggaattaaaa gatgaaaaca acagcaaagc tgtcgttcat gatgtttgtt gaatggttta
    93181 tctggggcgc gtggtttgtg ccattgtggt tgtggttaag taaaagcggt tttagtgccg
    93241 gagaaattgg ctggtcgtat gcctgtaccg ccattgcggc gatcctgtcg ccaattctgg
    93301 ttggctccat cactgaccgc tttttctcgg cgcaaaaagt gctggcggta ttgatgttcg
    93361 caggcgcgct gctgatgtat ttcgctgcgc aacagaccac ttttgccggg ttctttccgt
    93421 tactgctggc ttactctcta acctatatgc cgaccattgc gctgactaac agcatcgctt
    93481 ttgccaacgt gccggatgtg gagcgtgatt tcccgcgcat tcgtgtgatg ggcactatcg
    93541 gctggattgc ctccggtctg gcatgtggtt tcttgccgca aatactgggg tatgccgata
    93601 tctcaccgac taacatcccg ctgctgatta ccgccggaag ttctgctctg ctcggtgtgt
    93661 ttgcgttttt cctgcccggc acgccaccaa aaagcaccgg caaaatggat attaaagtca
    93721 tgctcggcct ggatgcgctg atcctgctgc gcgataaaaa cttcctcgtc tttttcttct
    93781 gttcattccc gtttgcgatg ccactggcgt tctattacat ctttgccaac ggttatctga
    93841 ccgaagtcgg catgaaaaat gccaccggct ggatgacgct cggccagttc tctgaaatat
    93901 tctttatgct ggcattaccg tttttcacta aacgctttgg tatcaaaaag gtattattgc
    93961 ttggtctggt catcgctgcg atccgctatg gcttctttat ttacggtagt gcggatgaat
    94021 atttcaccta cgcgttactg ttcctcggta ttttgcttca cggcgtaagt tacgattttt
    94081 actacgttac cgcttacatc tatgtcgata aaaaagcccc cgtgcatatg cgtaccgccg
    94141 cgcaggggct gatcacgctc tgctgccagg gcttcggcag tttgctcggc tatcgtcttg
    94201 gcggtgtgat gatggaaaag atgttcgctt atcaggaacc ggtaaacgga ctgactttca
    94261 actggtccgg gatgtggact tttggcgcgg tgatgattgc cattatcgcc gtgctgttca
    94321 tgattttttt ctgcgaatcc gacaacgaaa ttacggctat caaggtcgat gatcgcgata
    94381 ttgcgttgac acaaggggaa gttaaatgaa aacagaacgt attctcggtg ctctttatgg
    94441 gcaggcgtta ggggatgcga tggggatgcc ctccgagctt tggccacgca gccgcgttaa
    94501 agcacacttt ggctggattg accgttttct gcctggacca aaggagaata acgcggcctg
    94561 ttattttaac cgcgccgaat tcaccgacga tacctcgatg gcgctgtgtc tggcggatgc
    94621 gttgctggaa cgtaaaggca agatcgatcc ggatctgatt gggcgtaata tcctcgactg
    94681 ggcgctgcgt ttcgacgcct tcaacaaaaa cgtgctaggt ccgacctcga agattgcgct
    94741 taacgccatt cgcgacggta aacccgttgc tgaactggaa aacaacggcg taaccaacgg
    94801 cgcagcgatg cgcgtctcgc cattaggttg tttgcttccg gcgcgcgatg ttgattcctt
    94861 tattgatgat gtggcgctgg cgtcgagccc gacccataaa tccgatctgg cagttgcagg
    94921 tgcggtagtc atcgcatggg cgatttctcg tgctattgac ggagaaagct ggtcagcgat
    94981 tgttgattca ctgccttcaa ttacgcgaca tgcccagcaa aaacgcacca ccacgttcag
    95041 cgcctcactg gcggcgcggc tggagattgc gctgaaaatt gtgcgcaatg ccgacggcac
    95101 cgaatccgcc agcgaacagc tttaccaggt cgttggcgca ggtaccagca ctattgagtc
    95161 cgttccgtgc gccattgcgc tggttgaact ggcacaaacc gacccgaacc gttgcgccgt
    95221 cctctgcgct aaccttggcg gcgatacaga caccatcggt gctatggcga cggcaatctg
    95281 cggcgcgttg catggcatta acgctatcga tcctgcgtta aaggcggagc tggatgcggt
    95341 aaatcagctt gatttcaacc gctatgccac agcgctggcg aaatatcgtc aacaacggga
    95401 ggcggtatga gcggcgctcg attacacacg ctgctgcctg aattaaccac gcgtcagtcg
    95461 gtgatggtcg tcggcgcggc ggtcattgac gtgatcgccg acgcttatgc cctcccctgg
    95521 cgtgggtgcg atatcgaact gaaacagcag agcgttaacg ttggcggctg cgcactgaat
    95581 attgccgtgg cgttaaagcg cctcggcatc gaagcgggta atgccttgcc gctcggtcag
    95641 ggggtatggg cggagattat tcgcaaccgg atggcgaaag aggggttaat cagcctgatc
    95701 gataacgccg aaggcgataa cggctggtgt ctggcgctgg ttgagccgga tggcgaacgt
    95761 acttttatgt cattcagcgg tgtggaaaat cagtggaatc gccagtggct ggcgcgatta
    95821 accgttgcgc ctggcagcct gctctatttt tccggttatc aactggcctc gccctgcggc
    95881 gaattgttag tggaatggct ggaagagctg caagacgtga cgccgtttat cgattttggc
    95941 ccacgtattg gcgatatccc ggacgcatta ctggcgcgga tcatggcctg tcgaccttta
    96001 gtgtcactca atcgtcaaga ggctgagatt gccgccgaac gttttgcttt atccgcagag
    96061 ataacaacac ttggcaagca atggcaggag aaatttgccg cgccgttgat cgttcgtctc
    96121 gataaagaag gcgcatggta tttcagcaac gacgcttctg gctgcattcc ggcatttcca
    96181 acgcaagttg tcgacaccat tggtgcgggc gacagtcatg ccggtggcgt acttgccggg
    96241 ctggcctctg gtctgccact ggcggatgcc gtattactgg gcaatgcagt ggcgtcatgg
    96301 gttgtcgggc atcggggcgg tgattgtgcg ccaacgcgcg aggaactact cctcgcacac
    96361 aaaaacgtat agatcgctgc gacagtggct aatgctgtac tcaataggcc gttgctgttg
    96421 gtcaagcgcc acttgcttga tcaccagcac cggtattttg ctatctaact gaatatgtga
    96481 ctgaaactcg gcatccggca tccgggcgct aacgcgggaa cgcgtacgtt gtgggtaaat
    96541 gtgctggctg cggaaatagt cataaagtga aatcccgatg gcatcaacat catgaattaa
    96601 atgcgccgga acccacgatt cctcaatcga taccgcttct tcatcgacat agcgaatacg
    96661 cttaagcaaa aagacatcac ttcctgcttc gaccgccagc tgctgcgcga cttcttcggg
    96721 acatttcacg acacgcttgt taacccatag cgtatcgggc tttttcccgc gcaataccac
    96781 ctgctgagaa aaacctcgcg cttctttcaa cgagtattcg aagatgttgt tgatctgcgt
    96841 gccgtaaccg cgcgaacgcg tcaccacacc ctcttcttcc agcgcctgca tcgccttgcg
    96901 caccgtaatg cgcgaaacgc cggttaactg acttaaatca cgctcaccgg gcaaaatatt
    96961 gccatgctcc agcaccccgc tgcgcacggc attttttacc gtttcggcaa acttaatata
    97021 aagcggcgtg ttatccgccg ctaaaatacg ctcgttcagt tgggcaatca gctgggtatg
    97081 cgcttgttcc atttgtcttg ttcctgccgg ggagtctggt gggagtatat cactgcttct
    97141 tatttaaggc gtttctttaa tcccatcaac gaatgcctgc aactcctcca ccgtgccatt
    97201 aaatacatta aaatccaccg gaccattgat gccatctacc tgtccacggt cggaatgctg
    97261 ccagaagcgc caggccatgc cgtcattgtc cggacgacgt tgataatagt gagccaccca
    97321 ccacggatat tcattgaaat agcccgccag attggtgtga taaaaaacgg ctcctgagta
    97381 aataatcggc ttttttcccg tacttttttc gaccattttt agccactgac ttactcgttt
    97441 gcgtaattct tttgccgata attttccccg ttcttctacg tccagtaccg cagggaaatc
    97501 gccttgtgag aaatccaccg tttgcagaaa taatcgtgcc tgaaccggcg ctgctaccga
    97561 cggggagaaa taatgatacg ccccgcgcag caggccattt tcgcggctta gttgccagtt
    97621 acgcgaaaaa tacgggtcca ccagcttttc gccttccgtc gccttaataa aagcaaactg
    97681 taagcggata ccgttgtcgc gcatttttgc cacccgctgc cagtcgatcc gctcctgcca
    97741 gcgagaaaca tctattccgt gaatggtgta actggcagga atgcgaatag cgaaagattt
    97801 aaccgggcga taaccgtaga aatggatgta gtctgtaatc tgaactgctg tcgaatagaa
    97861 aaaattcacc ttctgacgcg gataaattgc aacgatggaa attagcccaa gagcgcataa
    97921 tagagaggtg agtttttttc gactggtaat tcttagctgc attggtttca tccctgaatg
    97981 tcagtgccaa aggctgacaa taaccaaagc agctatagta cggtgctcac caccaggcgt
    98041 ggaagtggtg aaccggacca ataccgtgac caacttccag cgtgtcggcc tgggctaatg
    98101 ctgatgaaag ccagctttta gcctcctgta cggtgtcagc ccagtttgta tggcgcgggc
    98161 gtagtgcagc caacgccgca gagagcgtac aaccagtgcc gtgggtgttt ttggtcataa
    98221 tgcgcggtgc ggtaaaccgt tgttcaccct cgcgggtaaa cagccagtcc gggctttgct
    98281 catcatccag atgaccacct ttcattagca ctgcgccaca gcccatcgcc aacagcgatc
    98341 gcccttgttc cagcatttcc tgttcggtgc gcgcgtgtgg cgcgtcgagc aaggcggcag
    98401 cttcgggcaa gtttggcgtt attaatgaaa cctgtggcaa taatcgactg cgcagcgtag
    98461 caaccgccga aggtgaaagc agcgggtcgc cgctttttgc cagcataacg gtgtcgagta
    98521 ccacgtattg gatctgataa cgttgcaacc gttctgccac cgcttcaaca atatcggttt
    98581 ccgccaacat accgatttta gtggtgtcga ttcgcacatc gctgaacacc gaatcgagct
    98641 gggcggcgac aaaatcagac tcaatgcgat acaccgactg tacgccacgg gtattttgcg
    98701 ccaccagtgc agtaataact gagcaaccat aagcgccaag tgccgagaag gttttaagat
    98761 cggcctgaat ccccgcacca ccactcggat cagtaccggc aatcgtcaga gcgttaattc
    98821 gtttcatgcc tgcacctcct gcgtcaattg ccagagcgca tcaaggaaat gtggaacaaa
    98881 actgcctggc ccctcgcttc tggcgactgc gcgttctccg gcttgtttca tccagtgaca
    98941 ggcagatgcg acattttcca gcgtatcgcc tggtaacgca cagcaggcag cgacaaccgc
    99001 cgataatgca cagccagttc ctaccacttt ggtcattaac ggatcgccac cgtgaatacc
    99061 aatgatacga tgtccatcgg taacataatc catctcgcca gtgaccacga cgattgcgcc
    99121 agtttcccgt gccagtgttt gtgcagcggg tatcgcgtta gctgcggcgt cagtggtatc
    99181 cactccccgt ccaccattag caatgccagc taatgccatg atttccgaag cattaccacg
    99241 tatagcggtt ggcttatgag gcagaagttc cagacaaaaa cggcggcgat aatcgagtgc
    99301 accaaccgct actggatcaa gcgtccaggg tgtttgagag ctttttgctt gctcaacggc
    99361 ggcacacatc gactgtgcgc gtagctgcgt cagcgtgcca acgttaatca gcaacgcact
    99421 agcaatagcc gcaaactgac tggcctcttc ggtttcgata accatcgctg gcgatgcacc
    99481 gagcgccagc aaggtattgg cagtaaaggt ttgcaccaca tcgttggtca tgcagtgcac
    99541 aagaggggaa tgttggtgaa aaaggtgtaa cgcgtgcgca gattgcgctg aactctgcag
    99601 gtcgacttgc atagtttgct cctgccataa cgtgaagaag caatgacctg gtggtccgtg
    99661 acttccctac gctggcatta tccagatcag gtaatacggg tatttctcag ccttcacaaa
    99721 gaagggcacc ccgagtcatt taaaacaaaa tcaaaagatt gcgattaacg tcccgttaat
    99781 ccctgttctg gatcatgcca gcgggaagcc aaagactcaa ccctaaaaaa tcctctgtgt
    99841 cccagtttgt gtctcacgtt gtggcccaca gataaatggc aggcacaaaa aaaccgccca
    99901 taaggcggct taagtaaatt attcagtcgt gaagatttaa atgaaatcta ttttctgcat
    99961 acgctttctt catgcagtcg aagtgctttt gccaattcca attggaatgc aaaggaaaga
   100021 cgggaacggc tgatcttgat accgtcaata atgatgtatg tagggtaaac agtgaccatg
   100081 cggcccaagt attggaagtg tttagggtgg tttactttat cgttattcat tgtgtgccat
   100141 ccgtctgggt gggggtaatc ccggcaacgg atgattgatc taaaatcgat caaaatcaat
   100201 aacttaacag atcaccaaat ccaggggggt gtacattggc gagcctccct cagcctaacc
   100261 tatacacgac cataaaatag gggcggattc cttccagttg ggtgggaaaa tatctgggag
   100321 tttggataca gtagccaggc agggtaacca gacccataga tgagaatgtt tattattccc
   100381 aaatatccag gcgaggggcc tgctgtggct ctctttacgc gccgctgtgg cgtcttctct
   100441 cctctttcta tacaatccca tagctaaccc attgcgaggc ttacagagcg ttacagagcg
   100501 tccgtgtgaa tattgcataa atgaaagtgg tgaaaggtcc gatttggtca acttttagac
   100561 aactatttaa catatgcgca acaggttaga cctgtaccct ttcaataggt ccgcctcctg
   100621 ggcgctgtgt acgccccata actgtggctc ttctgtaccc atccgggagc cattccacag
   100681 agtaaactgt aaaactgatc tgcctgtgag taacgccctt ttcctgtgga taacttccac
   100741 gcactaaccc cataaactcc ccttttgagg cgtccgcctc ttcaggccct ttcttgtggc
   100801 aaaaacacaa aaagggttta gggcggtggc taccgcccct gtagatggga atgagtcgca
   100861 ctcgaaagag ggattgagaa ccaattctca agtgataatc gatctcattt gtgttcgaag
   100921 ttttccccag aaaaataatt ttggggttaa gcatgtaaaa tgctacacac ttgcactttg
   100981 taatgataat taattgacca taaaaacaaa tagttagaag cgctggggga gtcccactag
   101041 ttacacaatt gattactttt tgagctaaaa ctgattcttt taccgggtat acaatccatt
   101101 tgatcgccct ttaccacata tttaaacgga tttaaagcca tttatttagg gggttagcaa
   101161 agtgttgatt tcatggttac agataacaaa aaagcccgcc gggggttagc cgggggcctg
   101221 tggttggggg tgtcaaacgt ggttagttcg gcccgccctg cattagcatg ttgaaagcct
   101281 gctgattatt gctctcaact tcagagcgta ccagatcctt aacctatcca tcctgcactt
   101341 tcacattaac gttcacgttt agcggctggt ttagccacgc tggcggcgtc atcagtggat
   101401 tacctgccat atcaacttta agctgtggcg ctgtaatcgt cggcgtagga ggtacataag
   101461 ttggattgga gtaagagctt acccaccctg ttttatctgc tggtttggca aagtctggat
   101521 tagtcggaag gtctggacta tggaggaaat cccacagttt acccagcggg ctatcttttt
   101581 tcagattgcc cccggcggtg gtgtcctgtc catacatggc gtcgttagcg tcatgacctt
   101641 atcccaggca taatccccac ctaccgaacc gaccgcaatg ctccagccaa caggaccgcc
   101701 agagagagcc gccgcgccgc ctaccttgcc aactttcgga ccccgacccg gtttgtttgg
   101761 cttgtcttta ccttccccac cagatccgcc agtagtagcg gcttcaatgc caccaatagc
   101821 ggcgatccct ttcatgaccc ccagtaattt ggttagtggg ttaagcatgg tcaacaacca
   101881 tttaaaggct acgcccaact tccagataga cccggcgaac atagccaccc cggcggcgta
   101941 tgctgccatt tcgccccagg ctttaagctg ctcaccagtg atccccatct tgctggcgta
   102001 atactcaata atgcggaagg tcaggatcac agtgtcatgc aactctgtaa acgcatctgt
   102061 ggcaccctca acgattttcc cggcaatatg cccgaacatc tcaaaggccc caccagagcc
   102121 gttaacagcg gcgctgatag cgtcgaaagc gctggttaat tcgttgccga agccagaagc
   102181 aaagaagatg ttcatcgcgt tctgcatact ggtttgcagg cgctgccagc ttgcccggtt
   102241 ggacttcata gccttatcca gagcgccgcc gttacgagct gcggctttca tctgtttagc
   102301 cacttccggg aggatgtcct tagagaacag cttcccttgt tgcatcaggt caaacagatc
   102361 cttttctgta aggttggttg tccctttcat ctggttgaga gccttaacga acagacccac
   102421 agcccccg
//
LOCUS       DAJVUP010000002        79475 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.002, whole genome shotgun sequence.
ACCESSION   DAJVUP010000002 DAJVUP010000000
VERSION     DAJVUP010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 79475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 79475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..79475
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.002"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            414..1616
                     /gene="proV"
                     /locus_tag="OQQ75_000095"
     CDS             414..1616
                     /gene="proV"
                     /locus_tag="OQQ75_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein ProV"
                     /protein_id="HCS1974562.1"
                     /translation="MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV
                     KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE
                     VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS
                     YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI
                     VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA
                     KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT
                     QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL
                     DREGVNNG"
     gene            1609..2673
                     /gene="proW"
                     /locus_tag="OQQ75_000096"
     CDS             1609..2673
                     /gene="proW"
                     /locus_tag="OQQ75_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     permease ProW"
                     /protein_id="HCS1974563.1"
                     /translation="MADQNNPWDTTPAADSAVQSADAWGTPATAPTDGGGADWLTSTP
                     APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL
                     GMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI
                     VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA
                     LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPSIMAGVNQTLMLAL
                     SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR
                     GNRRWYTTGPVGLLTRPFIK"
     gene            2731..3723
                     /gene="proX"
                     /locus_tag="OQQ75_000097"
     CDS             2731..3723
                     /gene="proX"
                     /locus_tag="OQQ75_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708493.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     substrate-binding protein ProX"
                     /protein_id="HCS1974564.1"
                     /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ
                     TLLVSRALEKLGYTVNKPSEVDYNVGYTLLASGDATFTAVNWTPLHDNMYEAAGGDKK
                     FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKEPKIAKLFDTNGDGKADLTGCNPG
                     WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL
                     KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWTEKNPAAAKLF
                     AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK"
     gene            4015..5199
                     /locus_tag="OQQ75_000098"
     CDS             4015..5199
                     /locus_tag="OQQ75_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1974565.1"
                     /translation="MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLS
                     ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLITASSQSLAMM
                     ILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL
                     GGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRAL
                     LGCLTFANFSILWTSMAFLLAAPPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKS
                     HHTTTFGLLLLLLSWLAIWFGHTSVLALIIGILVLDLTVQGVHITNQTVIYRIHPDAR
                     NRLTAGYMTSYFIGGAAGSLISASAWQHGGWAGVCLAGATIALVNLLVWWRGFHRQEA
                     AN"
     gene            5323..6060
                     /gene="ygaZ"
                     /locus_tag="OQQ75_000099"
     CDS             5323..6060
                     /gene="ygaZ"
                     /locus_tag="OQQ75_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine exporter subunit YgaZ"
                     /protein_id="HCS1974566.1"
                     /translation="MESPTPQPALGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG
                     FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRII
                     QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA
                     FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP
                     VAILAGIVCGCLTALIQAFWQGAPDEL"
     gene            6050..6385
                     /gene="ygaH"
                     /locus_tag="OQQ75_000100"
     CDS             6050..6385
                     /gene="ygaH"
                     /locus_tag="OQQ75_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine transporter subunit YgaH"
                     /protein_id="HCS1974567.1"
                     /translation="MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLD
                     TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG
                     LAWKVMAII"
     gene            6476..7006
                     /gene="emrR"
                     /locus_tag="OQQ75_000101"
     CDS             6476..7006
                     /gene="emrR"
                     /locus_tag="OQQ75_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter EmrAB
                     transcriptional repressor EmrR"
                     /protein_id="HCS1974568.1"
                     /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENR
                     NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE
                     RRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLS
                     RLDQMEQDGVVLEAMS"
     gene            7133..8305
                     /gene="emrA"
                     /locus_tag="OQQ75_000102"
     CDS             7133..8305
                     /gene="emrA"
                     /locus_tag="OQQ75_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrA"
                     /protein_id="HCS1974569.1"
                     /translation="MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFL
                     VLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFE
                     KAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREEL
                     QHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRI
                     VSPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITT
                     DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYP
                     LRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG"
     gene            8322..9860
                     /gene="emrB"
                     /locus_tag="OQQ75_000103"
     CDS             8322..9860
                     /gene="emrB"
                     /locus_tag="OQQ75_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrB"
                     /protein_id="HCS1974570.1"
                     /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL
                     GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWECGVSSSL
                     NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY
                     ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI
                     MLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLC
                     ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR
                     RLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP
                     ERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQL
                     EGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG
                     GGAH"
     gene            complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="OQQ75_000104"
     CDS             complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="OQQ75_000104"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008458247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HCS1974571.1"
                     /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN
                     KEVMPERGSHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD
                     AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
                     LPKEKLQELHI"
     gene            complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="OQQ75_000105"
     CDS             complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="OQQ75_000105"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1974572.1"
                     /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTQATTGH
                     PEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPL
                     SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW
                     QAKCCDISGTDAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPF
                     EKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAK
                     IGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI
                     NPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLG
                     IGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGKAYQKVCDELVACFDNPDLTFSAR
                     ILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMETADTE
                     PFAVWLEKHA"
     gene            complement(12218..12646)
                     /locus_tag="OQQ75_000106"
     CDS             complement(12218..12646)
                     /locus_tag="OQQ75_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1974573.1"
                     /translation="MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISYPWVLV
                     LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC
                     LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH"
     gene            complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="OQQ75_000107"
                     /pseudo
     CDS             complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="OQQ75_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311579.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1-phosphate/6-phosphogluconate
                     phosphatase"
     gene            complement(13346..13422)
                     /locus_tag="OQQ75_000108"
     tRNA            complement(13346..13422)
                     /locus_tag="OQQ75_000108"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13386..13388),aa:Arg,seq:acg)
     gene            complement(13621..13697)
                     /locus_tag="OQQ75_000109"
     tRNA            complement(13621..13697)
                     /locus_tag="OQQ75_000109"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13661..13663),aa:Arg,seq:acg)
     gene            complement(13895..13971)
                     /locus_tag="OQQ75_000110"
     tRNA            complement(13895..13971)
                     /locus_tag="OQQ75_000110"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13935..13937),aa:Arg,seq:acg)
     gene            complement(13975..14067)
                     /locus_tag="OQQ75_000111"
     tRNA            complement(13975..14067)
                     /locus_tag="OQQ75_000111"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14031..14033),aa:Ser,seq:gct)
     gene            complement(14383..14568)
                     /gene="csrA"
                     /locus_tag="OQQ75_000112"
     CDS             complement(14383..14568)
                     /gene="csrA"
                     /locus_tag="OQQ75_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HCS1974574.1"
                     /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR
                     EEIYQRIQAEKSQQSSY"
     gene            complement(14803..17433)
                     /gene="alaS"
                     /locus_tag="OQQ75_000113"
     CDS             complement(14803..17433)
                     /gene="alaS"
                     /locus_tag="OQQ75_000113"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HCS1974575.1"
                     /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM
                     NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY
                     FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN
                     KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ
                     FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL
                     SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL
                     VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG
                     ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI
                     RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD
                     KGELKDANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSA
                     THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNL
                     PIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI
                     ISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR
                     QLEKELQQLKEQAAAQESANISSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG
                     STIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD
                     AAALPAALASVKGWVSAKLQ"
     gene            complement(17561..18061)
                     /gene="recX"
                     /locus_tag="OQQ75_000114"
     CDS             complement(17561..18061)
                     /gene="recX"
                     /locus_tag="OQQ75_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HCS1974576.1"
                     /translation="MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKN
                     GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS
                     REATEKAMRECDIDWCALARDQATRKYDEPLPTVFSEKVKIQRFLLYRGYLMEDIQDI
                     WRNFAD"
     gene            complement(18304..19365)
                     /gene="recA"
                     /locus_tag="OQQ75_000115"
     CDS             complement(18304..19365)
                     /gene="recA"
                     /locus_tag="OQQ75_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HCS1974577.1"
                     /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG
                     SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP
                     IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
                     GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF
                     YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV
                     DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS
                     TPDFSVDDSEGVAETNEDF"
     gene            complement(19445..19942)
                     /gene="pncC"
                     /locus_tag="OQQ75_000116"
     CDS             complement(19445..19942)
                     /gene="pncC"
                     /locus_tag="OQQ75_000116"
                     /EC_number="3.5.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidase"
                     /protein_id="HCS1974578.1"
                     /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAG
                     SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSI
                     SGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
                     FLQNT"
     gene            complement(20087..21172)
                     /gene="mltB"
                     /locus_tag="OQQ75_000117"
     CDS             complement(20087..21172)
                     /gene="mltB"
                     /locus_tag="OQQ75_000117"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HCS1974579.1"
                     /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQ
                     HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT
                     SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG
                     VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA
                     GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMAN
                     GQAPGLPNGFKTRYSISQLATAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT
                     ITRYNHSTHYAMAVWQLGQAVALARVQ"
     gene            21428..21991
                     /gene="srlA"
                     /locus_tag="OQQ75_000118"
                     /gene_synonym="gutA"
     CDS             21428..21991
                     /gene="srlA"
                     /locus_tag="OQQ75_000118"
                     /gene_synonym="gutA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HCS1974580.1"
                     /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL
                     INFIGQHRIERFAQRCAGNPVSRYLLLPCIGTFVFCNPMTLSQGRFMPEKYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWV
                     TDLTTAIFEKKMGIQLEQKVHLAGATS"
     gene            21988..22953
                     /gene="srlE"
                     /locus_tag="OQQ75_000119"
                     /gene_synonym="gutE"
     CDS             21988..22953
                     /gene="srlE"
                     /locus_tag="OQQ75_000119"
                     /gene_synonym="gutE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HCS1974581.1"
                     /translation="MTRIRIEKGTGGWGGPLELEATPGKKIVYITAGTRPAIVDKLAQ
                     LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY
                     IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGMGSA
                     VAVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVM
                     LALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFI
                     PVGLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ"
     gene            22964..23335
                     /gene="srlB"
                     /locus_tag="OQQ75_000120"
                     /gene_synonym="gutB"
     CDS             22964..23335
                     /gene="srlB"
                     /locus_tag="OQQ75_000120"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HCS1974582.1"
                     /translation="MTVIYKTTITRIGASATDALSDQMLITFREGAPADLEEYCFIHC
                     HGELKGALHPGLQFTLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV
                     AGPVPDDIAPGSVLKFESVKE"
     gene            23339..24118
                     /gene="srlD"
                     /locus_tag="OQQ75_000121"
     CDS             23339..24118
                     /gene="srlD"
                     /locus_tag="OQQ75_000121"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HCS1974583.1"
                     /translation="MNQVAVVIGGGQTLGAFLCHGLVAEGYRVAVVDIQSDKAANVAQ
                     EINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL
                     GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG
                     GVGLTQSLALDLVEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDK
                     VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF"
     gene            24223..24581
                     /gene="gutM"
                     /locus_tag="OQQ75_000122"
                     /pseudo
     CDS             24223..24581
                     /gene="gutM"
                     /locus_tag="OQQ75_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
     gene            24648..25421
                     /gene="srlR"
                     /locus_tag="OQQ75_000123"
                     /gene_synonym="gutR"
     CDS             24648..25421
                     /gene="srlR"
                     /locus_tag="OQQ75_000123"
                     /gene_synonym="gutR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol operon DNA-binding transcriptional
                     repressor SrlR"
                     /protein_id="HCS1974584.1"
                     /translation="MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILE
                     HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST
                     VLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
                     FEHFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV
                     VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE"
     gene            25414..26379
                     /gene="gutQ"
                     /locus_tag="OQQ75_000124"
     CDS             25414..26379
                     /gene="gutQ"
                     /locus_tag="OQQ75_000124"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311591.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase GutQ"
                     /protein_id="HCS1974585.1"
                     /translation="MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGK
                     VVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA
                     KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNT
                     LMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASV
                     MDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTTGGTTL
                     QAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII"
     gene            complement(26376..27890)
                     /gene="norR"
                     /locus_tag="OQQ75_000125"
     CDS             complement(26376..27890)
                     /gene="norR"
                     /locus_tag="OQQ75_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311592.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HCS1974586.1"
                     /translation="MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL
                     RYDSRQFIPLAIDGLAKGVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI
                     PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA
                     LLIEQLESQNMMPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG
                     TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE
                     MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE
                     VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRLGLSRVVLSAGAR
                     NLLQHYRFPGNVRELEHAIHRAVVLARATRNGDEVILEAQHFAFPEVTLPPPEAAAVP
                     VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGMKD"
     gene            28077..29516
                     /gene="norV"
                     /locus_tag="OQQ75_000126"
     CDS             28077..29516
                     /gene="norV"
                     /locus_tag="OQQ75_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic nitric oxide reductase
                     flavorubredoxin"
                     /protein_id="HCS1974587.1"
                     /translation="MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK
                     NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC
                     TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA
                     VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL
                     PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI
                     AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR
                     FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALELCREHGREI
                     ARQWALAPLPQSTVNKVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT
                     PWSEVPDNFLCPECSLGKDVFEELASEAK"
     gene            29513..30646
                     /gene="norW"
                     /locus_tag="OQQ75_000127"
                     /pseudo
     CDS             29513..30646
                     /gene="norW"
                     /locus_tag="OQQ75_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417191.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavorubredoxin reductase NorW"
     gene            complement(30774..33026)
                     /gene="hypF"
                     /locus_tag="OQQ75_000128"
     CDS             complement(30774..33026)
                     /gene="hypF"
                     /locus_tag="OQQ75_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HCS1974588.1"
                     /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD
                     GVEVRLREDPETFLVQLHQHCPPLARIDSVEREPYIWSQLPTEFTIRQSAGGAMNTQI
                     VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP
                     ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI
                     KGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIV
                     LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN
                     EQALADLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALALPPGFKNVP
                     PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPKYVV
                     HDAHPGYVSSQWAREMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGE
                     NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYPE
                     TASVQQQNWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEA
                     LAASCHGVTHPVTMPLVDNQLDLAAFWQQWLNWQAQVNQRAWAFHDALAQGFAALMRE
                     QATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA
                     RWLAGEVQNG"
     gene            complement(33179..33706)
                     /gene="hydN"
                     /locus_tag="OQQ75_000129"
     CDS             complement(33179..33706)
                     /gene="hydN"
                     /locus_tag="OQQ75_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport protein HydN"
                     /protein_id="HCS1974589.1"
                     /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI
                     HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG
                     AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL
                     EQLSAEKRRRTALMF"
     gene            complement(33855..34865)
                     /gene="ascG"
                     /locus_tag="OQQ75_000130"
     CDS             complement(33855..34865)
                     /gene="ascG"
                     /locus_tag="OQQ75_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator AscG"
                     /protein_id="HCS1974590.1"
                     /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESG
                     YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS
                     AEEERQAIQYLLDLRCNAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVW
                     CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIA
                     NGKWTPASGAEGVETLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD
                     DIAIAPYIVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIHRDSLIAL
                     SR"
     gene            35125..36582
                     /gene="ascF"
                     /locus_tag="OQQ75_000131"
     CDS             35125..36582
                     /gene="ascF"
                     /locus_tag="OQQ75_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose/arbutin/salicin transporter
                     subunit IIBC"
                     /protein_id="HCS1974591.1"
                     /translation="MAKNYAALARSEIAALGGVDNISAVTHCMTRLRFVIKDDQLIDS
                     PTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTPRRI
                     GVGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF
                     LPLMVAASADIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYT
                     YTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS
                     AISALVYSIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSE
                     IGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIAS
                     LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFIL
                     TLLLGFEDIPVEEAAAQARKHQSVQPTVAKEVSLN"
     gene            36591..38015
                     /gene="ascB"
                     /locus_tag="OQQ75_000132"
     CDS             36591..38015
                     /gene="ascB"
                     /locus_tag="OQQ75_000132"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase AscB"
                     /protein_id="HCS1974592.1"
                     /translation="MSVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMA
                     VKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD
                     EITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRY
                     ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASA
                     LAAKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPA
                     YSARVFREKGVTIDKALGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSL
                     RNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDELAANGEINDDYR
                     ISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGT
                     LTRTRKKSFWWYKKVIASNGEDLE"
     gene            complement(38174..38644)
                     /gene="hycI"
                     /locus_tag="OQQ75_000133"
     CDS             complement(38174..38644)
                     /gene="hycI"
                     /locus_tag="OQQ75_000133"
                     /EC_number="3.4.23.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation peptidase HycI"
                     /protein_id="HCS1974593.1"
                     /translation="MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE
                     NDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK
                     EDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE"
     gene            complement(38637..39047)
                     /gene="hycH"
                     /locus_tag="OQQ75_000134"
     CDS             complement(38637..39047)
                     /gene="hycH"
                     /locus_tag="OQQ75_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase assembly protein HycH"
                     /protein_id="HCS1974594.1"
                     /translation="MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC
                     LEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA
                     QTSQQQEWSTMLLSMLHDIHQENAIYLMVRRLRD"
     gene            complement(39044..39811)
                     /gene="hycG"
                     /locus_tag="OQQ75_000135"
     CDS             complement(39044..39811)
                     /gene="hycG"
                     /locus_tag="OQQ75_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycG"
                     /protein_id="HCS1974595.1"
                     /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVD
                     CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS
                     APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL
                     GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDFLTQ
                     LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEVRIR"
     gene            complement(39811..40353)
                     /gene="hycF"
                     /locus_tag="OQQ75_000136"
     CDS             complement(39811..40353)
                     /gene="hycF"
                     /locus_tag="OQQ75_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycF"
                     /protein_id="HCS1974596.1"
                     /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCA
                     ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK
                     KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR
                     QKCLVPSDRIELTRHMKEAI"
     gene            complement(40363..42072)
                     /gene="hycE"
                     /locus_tag="OQQ75_000137"
     CDS             complement(40363..42072)
                     /gene="hycE"
                     /locus_tag="OQQ75_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycE"
                     /protein_id="HCS1974597.1"
                     /translation="MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPE
                     VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWVTVRVEVDANKPEYP
                     SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA
                     PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR
                     GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL
                     EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR
                     RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP
                     MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD
                     NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT
                     LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS
                     PLK"
     gene            complement(42090..43013)
                     /gene="hycD"
                     /locus_tag="OQQ75_000138"
     CDS             complement(42090..43013)
                     /gene="hycD"
                     /locus_tag="OQQ75_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycD"
                     /protein_id="HCS1974598.1"
                     /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR
                     DIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY
                     LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI
                     TDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG
                     VMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFEN
                     SMARLRLDITPRITWAGFGFAFLAFVSLLAA"
     gene            complement(43016..44401)
                     /gene="hycC"
                     /locus_tag="OQQ75_000139"
                     /pseudo
     CDS             complement(43016..44401)
                     /gene="hycC"
                     /locus_tag="OQQ75_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311606.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit 3"
     gene            complement(44387..44647)
                     /locus_tag="OQQ75_000140"
                     /pseudo
     CDS             complement(44387..44647)
                     /locus_tag="OQQ75_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708526.1"
                     /note="regulates several genes involved in the formate
                     hydrogenlyase system; seems to prevent binding of FhlA
                     transcriptional activator to the activator sequence of hyc
                     operon; incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            44859..45209
                     /gene="hypA"
                     /locus_tag="OQQ75_000141"
     CDS             44859..45209
                     /gene="hypA"
                     /locus_tag="OQQ75_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1974599.1"
                     /translation="MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSL
                     AFCFDLVCRGSVAEGCKLHLEEQEVECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVA
                     DDGLQIRRIEIDQE"
     gene            45213..46085
                     /gene="hypB"
                     /locus_tag="OQQ75_000142"
     CDS             45213..46085
                     /gene="hypB"
                     /locus_tag="OQQ75_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HCS1974600.1"
                     /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIK
                     APEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR
                     KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV
                     NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG
                     EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG
                     MDQWLNWLETQRCA"
     gene            46076..46348
                     /gene="hypC"
                     /locus_tag="OQQ75_000143"
     CDS             46076..46348
                     /gene="hypC"
                     /locus_tag="OQQ75_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 3 maturation protein HypC"
                     /protein_id="HCS1974601.1"
                     /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV
                     GQWVLVHVGFAMSVITEAEARDTLDALQNMFDVEPDVGALLYGEEK"
     gene            46348..47469
                     /gene="hypD"
                     /locus_tag="OQQ75_000144"
     CDS             46348..47469
                     /gene="hypD"
                     /locus_tag="OQQ75_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HCS1974602.1"
                     /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH
                     THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV
                     PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ
                     AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF
                     HRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV
                     NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH
                     QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA"
     gene            47466..48476
                     /gene="hypE"
                     /locus_tag="OQQ75_000145"
     CDS             47466..48476
                     /gene="hypE"
                     /locus_tag="OQQ75_000145"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation carbamoyl dehydratase
                     HypE"
                     /protein_id="HCS1974603.1"
                     /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLA
                     QLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPCYLSCGFILEE
                     GLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWG
                     AQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKA
                     LRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV
                     IAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR
                     IC"
     gene            48550..50628
                     /gene="flhA"
                     /locus_tag="OQQ75_000146"
     CDS             48550..50628
                     /gene="flhA"
                     /locus_tag="OQQ75_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase transcriptional activator
                     FlhA"
                     /protein_id="HCS1974604.1"
                     /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALA
                     DNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRRILSRPDTLHCSYEEFC
                     ETWPQLVAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIV
                     SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYF
                     DIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL
                     HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR
                     QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL
                     KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL
                     FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN
                     KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF
                     TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI
                     ALPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK
                     RLGIDKSALI"
     gene            complement(50665..51018)
                     /locus_tag="OQQ75_000147"
     CDS             complement(50665..51018)
                     /locus_tag="OQQ75_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
                     /protein_id="HCS1974605.1"
                     /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR
                     LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP
                     VPELPEKYRPKKPRE"
     gene            complement(51095..51229)
                     /locus_tag="OQQ75_000148"
     CDS             complement(51095..51229)
                     /locus_tag="OQQ75_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974606.1"
                     /translation="MIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIASVE
                     "
     gene            51305..53866
                     /gene="mutS"
                     /locus_tag="OQQ75_000149"
     CDS             51305..53866
                     /gene="mutS"
                     /locus_tag="OQQ75_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCS1974607.1"
                     /translation="MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDA
                     KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS
                     KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP
                     ADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG
                     TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN
                     LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF
                     TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA
                     LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL
                     EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE
                     YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN
                     YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM
                     RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH
                     NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME
                     DVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
                     ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV"
     gene            53972..54628
                     /gene="pphB"
                     /locus_tag="OQQ75_000150"
     CDS             53972..54628
                     /gene="pphB"
                     /locus_tag="OQQ75_000150"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS1974608.1"
                     /translation="MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETD
                     LLISVGDNIDRGPESLDVLRLLNQPWFISVKGNHEAMELDAFATGDGNMWLASGGDWF
                     FDLNDSEQQEAIDLLLKFHHLPHIIEITNDIIKYVIAHADYPGDEYLFGKEIAESELL
                     WPVYRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPKSGRLSFYKIR
                     "
     gene            complement(54679..55446)
                     /locus_tag="OQQ75_000151"
     CDS             complement(54679..55446)
                     /locus_tag="OQQ75_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1974609.1"
                     /translation="MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLE
                     QQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGT
                     TTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM
                     LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWL
                     ALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE"
     gene            55642..56550
                     /locus_tag="OQQ75_000152"
     CDS             55642..56550
                     /locus_tag="OQQ75_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1974610.1"
                     /translation="MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACAT
                     LKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSST
                     IASADAQEIATALAGFDLEMLDAPVSGDAVKAANGEMTVMASGSDIAFERLAPVLEAV
                     AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAG
                     NSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSAS
                     NAGYGKEDDSAVIKIFSGITLPGAKS"
     gene            56547..57809
                     /locus_tag="OQQ75_000153"
     CDS             56547..57809
                     /locus_tag="OQQ75_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HCS1974611.1"
                     /translation="MIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAID
                     ALVISLKTRSCPVVEATQQSLAALSWLQQQGCKQIYFKYCSTFDSTAKGNIGPVTDAL
                     MDALDTPFTVFSPALSVNGRTVYQGYLFVMNQLLAESGMRHHPVNPMTDSYLPRLVEA
                     QSTGRCGVVSAHVFEQGVDAVRQELARLQQEGYRYAVLDALTEHHLEIQGEALRDAPL
                     VTGGSGLAIGLARQWAQENGNQAREAGHPLAGRGVVLSGSCSQMTNRQVAHYRQIAPA
                     REVDVARCLSTETLAAYAHELAEWVLGQESVLAPLVFATASTDALAAIQQQYGAQKAS
                     QAVETLFSQLAARLAAEGVTRFIVAGGETSGVVTQSLGIKGFHIGPTISPGVPWVNAL
                     DKPVSLALKSGNFGDEAFFSRAQREFLS"
     gene            57806..58444
                     /locus_tag="OQQ75_000154"
     CDS             57806..58444
                     /locus_tag="OQQ75_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS1974612.1"
                     /translation="MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNL
                     LATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHST
                     WSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF
                     LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS"
     gene            58449..59225
                     /locus_tag="OQQ75_000155"
     CDS             58449..59225
                     /locus_tag="OQQ75_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HCS1974613.1"
                     /translation="MPRFAANLSMMFTEVPFIERFAAARKAGFDAMEFLFPYDYSTLQ
                     IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQV
                     HVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPDVKPHYLFSSQYQ
                     ALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGE
                     INYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWR"
     gene            59314..60678
                     /locus_tag="OQQ75_000156"
     CDS             59314..60678
                     /locus_tag="OQQ75_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family transporter"
                     /protein_id="HCS1974614.1"
                     /translation="MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAG
                     IPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTI
                     AALTLAAFFLGIPVFFDVSFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPP
                     HPGPVATAGLLHADIGWLTIIGIAISIPVGIVGYFAAKIINKRQYAMSVEVLEQMQLA
                     PASEEGATKLSDKINPPGVALVTSLIVIPIAIIMTGTVSATLMPPSHPLLGTLQLIGS
                     PMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVES
                     GVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQC
                     VLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCV
                     WAVI"
     gene            complement(60772..61764)
                     /gene="rpoS"
                     /locus_tag="OQQ75_000157"
     CDS             complement(60772..61764)
                     /gene="rpoS"
                     /locus_tag="OQQ75_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HCS1974615.1"
                     /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEE
                     LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV
                     VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
                     QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER
                     ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR
                     RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE"
     gene            complement(61827..62918)
                     /gene="nlpD"
                     /locus_tag="OQQ75_000158"
     CDS             complement(61827..62918)
                     /gene="nlpD"
                     /locus_tag="OQQ75_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator NlpD"
                     /protein_id="HCS1974616.1"
                     /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP
                     ANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSY
                     SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
                     NAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTA
                     PVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAI
                     IATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMG
                     STGTSSTRLHFEIRYKGKSVNPLRYLPQR"
     gene            complement(63058..63684)
                     /gene="pcm"
                     /locus_tag="OQQ75_000159"
     CDS             complement(63058..63684)
                     /gene="pcm"
                     /locus_tag="OQQ75_000159"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HCS1974617.1"
                     /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA
                     WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCS
                     VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT
                     QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA"
     gene            complement(63678..64439)
                     /gene="surE"
                     /locus_tag="OQQ75_000160"
     CDS             complement(63678..64439)
                     /gene="surE"
                     /locus_tag="OQQ75_000160"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HCS1974618.1"
                     /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS
                     LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI
                     YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV
                     PDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD
                     EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW"
     gene            complement(64420..65469)
                     /gene="truD"
                     /locus_tag="OQQ75_000161"
     CDS             complement(64420..65469)
                     /gene="truD"
                     /locus_tag="OQQ75_000161"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HCS1974619.1"
                     /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI
                     LVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLS
                     AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF
                     GAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ
                     VVDGDALQLAGRGSWFVATTEELAELQHRVNDKELMITAALPGSGEWGTQRKALAFEQ
                     AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV
                     RELINTTGDYAHIAE"
     gene            complement(65466..65945)
                     /gene="ispF"
                     /locus_tag="OQQ75_000162"
     CDS             complement(65466..65945)
                     /gene="ispF"
                     /locus_tag="OQQ75_000162"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HCS1974620.1"
                     /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL
                     TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA
                     PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK"
     gene            complement(65945..66655)
                     /gene="ispD"
                     /locus_tag="OQQ75_000163"
     CDS             complement(65945..66655)
                     /gene="ispD"
                     /locus_tag="OQQ75_000163"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HCS1974621.1"
                     /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA
                     LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWV
                     LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL
                     WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE
                     DLALAEFYLTRTIHQENT"
     gene            complement(66674..66985)
                     /gene="ftsB"
                     /locus_tag="OQQ75_000164"
     CDS             complement(66674..66985)
                     /gene="ftsB"
                     /locus_tag="OQQ75_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HCS1974622.1"
                     /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNA
                     KLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNN
                     R"
     gene            complement(67179..67502)
                     /locus_tag="OQQ75_000165"
     CDS             complement(67179..67502)
                     /locus_tag="OQQ75_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3561 family protein"
                     /protein_id="HCS1974623.1"
                     /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML
                     IYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF
                     MWLLG"
     gene            complement(67552..68157)
                     /gene="cysC"
                     /locus_tag="OQQ75_000166"
     CDS             complement(67552..68157)
                     /gene="cysC"
                     /locus_tag="OQQ75_000166"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HCS1974624.1"
                     /translation="MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTV
                     AGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV
                     VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT
                     GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS"
     gene            complement(68157..69584)
                     /gene="cysN"
                     /locus_tag="OQQ75_000167"
     CDS             complement(68157..69584)
                     /gene="cysN"
                     /locus_tag="OQQ75_000167"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HCS1974625.1"
                     /translation="MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI
                     GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
                     STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI
                     KHLVVAINKMDLVDYSEETFTHIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE
                     SMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQ
                     RVKALPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAV
                     PSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYPVDINNLTQREVENLPLNG
                     IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSA
                     FELELNALVRRHFPHWGARDLLGDK"
     gene            complement(69586..70494)
                     /gene="cysD"
                     /locus_tag="OQQ75_000168"
     CDS             complement(69586..70494)
                     /gene="cysD"
                     /locus_tag="OQQ75_000168"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HCS1974626.1"
                     /translation="MAQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML
                     HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP
                     FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP
                     KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE
                     RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVST
                     TSERQGRVIDRDQAGSMELKKRQGYF"
     gene            70746..71783
                     /gene="iap"
                     /locus_tag="OQQ75_000169"
     CDS             70746..71783
                     /gene="iap"
                     /locus_tag="OQQ75_000169"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase isozyme conversion
                     aminopeptidase"
                     /protein_id="HCS1974627.1"
                     /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF
                     PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIA
                     AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKN
                     TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV
                     KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV
                     EATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIM
                     LPLVKELAKAS"
     gene            complement(71990..72283)
                     /gene="cas2"
                     /locus_tag="OQQ75_000170"
     CDS             complement(71990..72283)
                     /gene="cas2"
                     /locus_tag="OQQ75_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endoribonuclease
                     Cas2"
                     /protein_id="HCS1974628.1"
                     /translation="MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIW
                     QQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ"
     gene            complement(72283..73203)
                     /gene="cas1e"
                     /locus_tag="OQQ75_000171"
     CDS             complement(72283..73203)
                     /gene="cas1e"
                     /locus_tag="OQQ75_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endonuclease Cas1"
                     /protein_id="HCS1974629.1"
                     /translation="MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHI
                     PVGSVACIMLEPGTRVSHAAVHLAATVGTLQVWVGEAGVRVYSSGQPGGARADKLLYQ
                     AKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKW
                     NGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYD
                     IADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGE
                     IEPPQPAPDMLPPAIPEPETLGDSGHRGRG"
     gene            complement(73200..73850)
                     /gene="cas6e"
                     /locus_tag="OQQ75_000172"
     CDS             complement(73200..73850)
                     /gene="cas6e"
                     /locus_tag="OQQ75_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas6/Cse3/CasE"
                     /protein_id="HCS1974630.1"
                     /translation="MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPSGKERQ
                     FLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKA
                     GKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDISVDAYRQQQ
                     LRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA"
     gene            complement(73832..74578)
                     /gene="cas5e"
                     /locus_tag="OQQ75_000173"
     CDS             complement(73832..74578)
                     /gene="cas5e"
                     /locus_tag="OQQ75_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cas5/CasD"
                     /protein_id="HCS1974631.1"
                     /translation="MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSLSALLGLLAAGV
                     GIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPE
                     LLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPL
                     APLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDV
                     PLNRQQWLFGERTVNQGPWLSKEEPCTSQE"
     gene            complement(74589..75667)
                     /gene="cas7e"
                     /locus_tag="OQQ75_000174"
                     /pseudo
     CDS             complement(74589..75667)
                     /gene="cas7e"
                     /locus_tag="OQQ75_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311639.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas7/Cse4/CasC"
     gene            complement(75695..76264)
                     /gene="casB"
                     /locus_tag="OQQ75_000175"
     CDS             complement(75695..76264)
                     /gene="casB"
                     /locus_tag="OQQ75_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005008196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse2/CasB"
                     /protein_id="HCS1974632.1"
                     /translation="MSIVKDEHKVALRKWHEELQDKRGERASLRRSTTVNDVCLTDGF
                     RLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMKKGRFTRLL
                     AVKTPDDLLRQLRRAVKLLNGSVNLDSLEEGVFRWCQESDDLLNHHRRQQRPTEFIRI
                     RWALGAGRWALGAGRWALGAGILPGWRRR"
     gene            complement(76261..77823)
                     /gene="casA"
                     /locus_tag="OQQ75_000176"
     CDS             complement(76261..77823)
                     /gene="casA"
                     /locus_tag="OQQ75_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse1/CasA"
                     /protein_id="HCS1974633.1"
                     /translation="MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADL
                     QGAAWQFLLGLLQTSFAPKDQRSWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFM
                     QDFDELKVKATFIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNA
                     PIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDD
                     LVFPWLAPTRTSELDGAVVTDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDA
                     LLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNS
                     KNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIP
                     KLRLAAQAASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIE
                     EGQDPDELLSKWQKEMWLFARQDFDDRVFTNPYEPVDLERVMTARKKYFTTSAEKQNA
                     NAAREKKQEAAE"
     gene            complement(77921..79475)
                     /gene="cas3"
                     /locus_tag="OQQ75_000177"
                     /pseudo
     CDS             complement(77921..79475)
                     /gene="cas3"
                     /locus_tag="OQQ75_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142534.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="CRISPR-associated helicase Cas3'"
BASE COUNT        18741 a        21564 c        20304 g        18866 t
ORIGIN      
        1 gctcctctta tgtgatgggg aaagcggttg aaacagaaga tgaagactgg aatttctgag
       61 ggtgttattt tcaaaaatat cactacccgc agcagggaaa taattcccgc caaatagctt
      121 tttatcacgc aaatattctg tagtgatcta cactgagact ctgttgcatt attcgcctga
      181 aactacaata ttcaggcgtt ttttcgctat ctatgacaaa aaatatcaac ttttctcgat
      241 ttgctctcag cccttatatc acgggaaatt ccggcgattt gctcgcatca atattcatgc
      301 cacatttgcc ctcaggggtt gcctcagatt ctcagtatgt tagggtagaa aaaagtgact
      361 atttccattg ggtaatatat cgacataaac aaataaagga atctttctat tgcatggcaa
      421 ttaaattaga aattaaaaat ctttataaaa tatttggcga gcatccacag cgagcgttca
      481 aatatatcga acaaggactt tcgaaagaac aaattctgga aaaaactggg ctatcgcttg
      541 gcgtaaaaga cgccagtctg gccattgaag aaggcgagat atttgtcatc atgggattat
      601 ccggctcggg taaatccaca atggtacgcc ttctcaatcg cctgattgaa cccacccgcg
      661 ggcaagtgct gattgatggt gtggatattg ccaaaatatc cgatgccgaa ctccgtgagg
      721 tgcgcagaaa aaagattgcg atggtcttcc agtcctttgc cttaatgccg catatgaccg
      781 tgctggacaa tactgcgttc ggtatggaat tggccggaat taatgcagaa gaacgccggg
      841 aaaaagccct tgatgcactg cgtcaggtcg ggctggaaaa ttatgcccac agctacccgg
      901 atgaactctc tggcgggatg cgtcaacgtg tgggattagc ccgcgcgtta gcgattaatc
      961 cggatatatt attaatggac gaagccttct cggcgctcga tccattaatt cgcaccgaga
     1021 tgcaggatga gctggtaaaa ttacaggcga aacatcagcg caccattgtc tttatttccc
     1081 acgatctcga tgaagctatg cgtattggcg accgaattgc cattatgcaa aatggtgaag
     1141 tggtacaggt cggcacaccg gatgaaattc tcaataatcc ggcgaatgat tatgtccgta
     1201 ccttcttccg tggcgttgat attagtcagg tattcagtgc gaaagatatt gcccgccgga
     1261 caccgaatgg cttaattcgt aaaacccctg gcttcggccc acgttcggca ctgaaattat
     1321 tgcaggatga agatcgcgaa tatggctacg ttatcgaacg cggtaataag tttgtcggcg
     1381 cagtttccat cgattcgctt aaaaccgcgt taacgcagca gcaaggtctt gatgcggcgc
     1441 tgattgatgc gccgttagca gtcgatgcac aaacgcctct tagcgagttg ctctctcatg
     1501 tcggacaggc accctgtgcg gtacccgtgg tcgacgagga ccaacagtat gtcggcatca
     1561 tttcgaaagg aatgctgctg cgcgctttag atcgtgaggg ggtaaataat ggctgatcaa
     1621 aataatccgt gggataccac gccagcggcg gacagtgccg tgcaatccgc agacgcctgg
     1681 ggtacaccgg cgactgcacc gactgacggc ggtggtgctg actggctgac cagtacgcct
     1741 gcgccaaacg tcgagcattt taatattctc gatccgttcc ataaaacgct gatcccgctc
     1801 gacagttggg tcactgaagg gatcgactgg gttgttaccc atttccgtcc cgtcttccag
     1861 ggcgtgcgcg ttccggttga ttatatcctc aacggtttcc agcaattgct gctgggtatg
     1921 cccgcaccgg tggcgattat cgttttcgct ctcatcgcct ggcagatttc cggggtcgga
     1981 atgggcgtgg cgacgctggt ttcgctgatt gccatcggcg caatcggtgc ctggtcgcag
     2041 gccatggtta ccctggcgct ggtgttaacc gccctgctgt tctgtatcgt cattggtttg
     2101 ccgctgggga tctggctggc gagaagtccg cgagcggcga aaattattcg tccactgctt
     2161 gatgccatgc agaccacgcc agcgtttgtt tatctggtgc caatcgtcat gctatttggt
     2221 atcggtaacg tgccgggcgt ggtggtgacg atcatctttg ctctgccgcc gattatccgt
     2281 ctgaccattc tggggattaa ccaggttccg gcggatctga ttgaagcctc gcgctcattc
     2341 ggtgccagcc cgcgccagat gctgttcaaa gttcagttac cgctggcgat gccgagcatt
     2401 atggcgggcg ttaaccagac gctgatgctg gccctttcta tggtggtcat tgcctcgatg
     2461 attgccgtcg gcgggctggg tcagatggta cttcgcggta tcggtcgtct ggatatgggg
     2521 cttgccaccg ttggcggcgt cgggattgtg atcctcgcca ttatcctcga tcgcctgacg
     2581 caggccgttg ggcgcgactc acgcagtcgc ggcaaccgtc gctggtacac cactggccct
     2641 gttggtctgc tgacccgccc attcattaag taactctgca cttgcccggt gacgccgggc
     2701 attatcaccc tgccaaaaaa aggaataaca atgcgacata gcgtactttt tgcgacagcg
     2761 tttgccacgc ttatctctac acaaactttt gctgccgatc tgccgggcaa aggtattact
     2821 gttaatccag ttcaaagcac catcaccgaa gaaaccttcc agacgctgct ggtcagccgt
     2881 gcgctggaga aattaggcta taccgtcaac aaacccagcg aagtagatta caacgttggc
     2941 tacaccttgc ttgcttccgg cgatgcaacc ttcaccgccg tgaactggac gccactgcat
     3001 gacaacatgt acgaagctgc cggtggcgat aagaaatttt atcgtgaagg ggtatttgtt
     3061 aacggcgcgg cacagggtta cctgatcgat aagaaaaccg ccgaccagta caaaatcacc
     3121 aacatcgcac aactgaaaga gccgaagatc gccaaactgt tcgataccaa cggcgacggt
     3181 aaagcggatt taaccggttg taatcctggc tggggctgcg aaggtgcgat caaccaccag
     3241 cttgccgcgt atgaactgac caacaccgtg acgcataatc aggggaacta cgcagcgatg
     3301 atggccgaca ccatcagtcg ctacaaagag ggcaaaccgg tgttttatta cacctggacg
     3361 ccgtactggg tgagtaatga gctgaagcca gggaaagatg tggtctggtt gcaggtgccg
     3421 ttctccgcac tgccgggcga taaaaatgcc gataccaaac tgccgaatgg cgcgaattac
     3481 ggcttcccgg tcagcaccat gcatatcgtt gccaacaaag cctggaccga gaaaaatccg
     3541 gcggcagcca aactgtttgc cattatgcag ttgccagtgg ccgatattaa cgcccagaac
     3601 gccattatgc atgacggcaa agcctcagaa ggcgatattc agggccacgt tgatggctgg
     3661 atcaaagccc accagcagca gttcgatggc tgggtgaatg aggcgctggc agcgcagaag
     3721 taatttttat tcaggcggat aaggcgtttt tgccttatcc gccgctctgt acacaatgcc
     3781 tgatgcgacg ctgacgcgtc ttatcatgcc tacaaaatac actcattccg tatggcggat
     3841 aaggcgtttt cgccgcatcc gccgttctgt gcacaatgcc tgatgcgacg ctggcgcgtc
     3901 ttatcatgcc tacaaaccac atcgcacatt tcaacaagct atctttcatc ccatattcat
     3961 caacatccgc tattattgat ttccagctta atcatcacct gatgaacaaa aataatgact
     4021 aaacctaatc atgagcttag cccggcgctg atcgtgctga tgtctatcgc caccggtctg
     4081 gcggtagcca gtaactatta cgcccagcca ttgctcgaca ccatcgcgcg taacttttcc
     4141 ctttccgcca gttcggcagg ctttattgtt accgccgcgc aattgggcta tgcagcaggt
     4201 ctgctgtttc ttgttcccct cggtgatatg tttgaacgcc gccgcctgat tgtctcgatg
     4261 accttactgg cggcaggcgg catgttaatc actgccagca gtcagtcgct ggcgatgatg
     4321 atcctcggta cggcattaac cggtttattc tctgtcgtgg cacaaattct ggttccgctg
     4381 gcagcgacgc tggcttcacc ggacaaacgc ggcaaagtgg ttggcactat tatgagcggt
     4441 ctgctgttgg ggatcttact cgcacggacc gttgccggat tgctggcgaa tctcggcggc
     4501 tggcgcaccg tcttttgggt tgcctcggtg ttaatggcac tgatggcgct ggcattatgg
     4561 cgtggtctgc cacaaatgaa atcagaaacc cacctcaact acccacagtt gttaggttcc
     4621 gttttcagca tgtttatcag cgataagatc ctgcgcaccc gcgcattgct gggctgcctg
     4681 acctttgcca acttcagcat tctctggacc tcaatggcct ttttgcttgc cgctccacct
     4741 tttaactaca gcgatggtgt cattggtctg tttggacttg cgggagctgc cggagcgttg
     4801 ggcgctcgtc cggcgggcgg ttttgccgat aagggtaaat cgcaccacac cacaactttc
     4861 ggtctgctgc tgctattact ttcatggctg gcgatctggt ttggtcacac ttccgtactg
     4921 gcgctgatta tcggcatcct ggtgctggat ctcaccgtac agggcgtgca tatcactaac
     4981 cagacggtaa tttatcgaat acaccctgat gcgcgtaatc gcctgaccgc aggttacatg
     5041 accagctact ttattggcgg tgccgccggt tcgctaattt cagcctcagc ctggcaacat
     5101 ggcggttggg ctggcgtttg tctggctggc gcgacgattg ccctggttaa cttactggtc
     5161 tggtggcgag gttttcatcg tcaggaagcc gcaaattaag caatcagcaa ccgttttcgt
     5221 ggctttacac ttataagggt gttaagaagc ccatcagtct gataaggtta agatattcat
     5281 tcagtctatt tataatatta acaatcgtta agcgtacact ctatggaaag ccctactcca
     5341 cagcctgctc ttggttcggc gaccttcatg gaaggatgca aagacagttt accgattgtt
     5401 attagttata ttccggtggc ctttgcgttc ggtctgaatg cgacccgtct gggattctct
     5461 cctctcgaaa gcgttttttt ctcctgcatc atttatgcag gcgcgagcca gttcgtcatt
     5521 accgcgatgc tggcagccgg gagtagtttg tgggttgctg cactgaccgt catggcaatg
     5581 gatgttcgcc atgtgttgta tggcccgtca ctgcgtagcc gtattattca gcgtctgcaa
     5641 aaatcgaaaa ccgccctgtg ggcatttggc ctgacggatg aggtttttgc cgccgcaacc
     5701 gcaaaactgg tacgcaataa tcgccgctgg agcgagaact ggatgatcgg cattgccttc
     5761 agttcatggt catcgtgggt atttggtacg gtaatagggg cattctccgg cagcggcttg
     5821 ctgcaaggtt atcccgccgt tgaagctgca ttaggtttta tgcttccggc actctttatg
     5881 agtttcctgc tcgcctcttt ccagcgcaaa caatctcttt gcgttaccgc agcgttagtt
     5941 ggtgcccttg caggcgtaac gctattttct attcccgtcg ccattctggc aggcattgtc
     6001 tgtggctgcc tcactgcgtt aatccaggca ttctggcaag gagcgcccga tgagctatga
     6061 ggttctgctg cttgggttac tggttggcgt ggcgaattat tgcttccgct atttgccgct
     6121 gcgcctgcgt gtgggtaatg cccgcccaac caaacgtggc gcggtaggta ttttgctcga
     6181 caccattggc atcgcctcga tatgcgctct gctggttgtc tctaccgcac cagaagtgat
     6241 gcacgataca cgccgtttcg tgcccacgct ggtcggcttc gcggtactgg gtgccagttt
     6301 ctataaaaca cgcagcatta tcatcccaac actgcttagt gcgctggcct atgggctcgc
     6361 ctggaaagtg atggcgatta tataacccac aagaatcatt tttctaaaac aatacattta
     6421 ctttatttgt tactgtcgtt actatatcgg ctgaaattaa tgaggtcata cccaaatgga
     6481 tagttcgttt acgcccattg aacaaatgct aaaatttcgc gccagccgcc acgaagattt
     6541 tccttatcag gagatccttc tgactcgtct ttgcatgcac atgcaaagca agctgctgga
     6601 gaaccgcaat aaaatgctga aggctcaggg gattaacgag acgttgttta tggcgttgat
     6661 tacgctggag tctcaggaaa accacagtat tcagccttct gaattaagtt gtgctcttgg
     6721 atcatcccgt accaacgcga cgcgtattgc cgatgaactg gaaaaacgcg gttggatcga
     6781 acgtcgtgaa agcgataacg atcgccgctg cctgcatctg caattaacgg aaaaaggtca
     6841 cgagtttttg cgcgaggttt taccaccgca gcataactgc ctgcatcaac tctggtccgc
     6901 gctcagcaca acagaaaaag atcagctcga gcaaatcacc cgcaaattgc tctcccgtct
     6961 cgaccagatg gaacaagacg gtgtggttct cgaagcgatg agctaacgcg tcatctcgct
     7021 caaaaatcca gatttataaa agaaaaaatg accggccagc atcgcaacat gctggccttt
     7081 ttggcaagca ggtcggctca gccgatgagt taagaagatc gtggagaaca atatgagcgc
     7141 aaatgcggag actcaaaccc cgcagcaacc ggtaaagaag agcggcaaac gtaagcgtct
     7201 gctcctcctt ctcaccttgc tctttataat tattgccgta gcgataggga tttattggtt
     7261 tttggtactg cgtcatttcg aagaaaccga tgacgcatac gtggcaggga atcagattca
     7321 aattatgtct caggtgtctg gcagcgtgac gaaagtctgg gccgataaca ccgattttgt
     7381 aaaagaaggc gatgttctgg tcactctcga cccgacagat gctcgccagg cgtttgaaaa
     7441 agccaaaact gcactggctt ccagcgttcg ccaaacccac cagctgatga ttaacagcaa
     7501 acagttacag gcgaatattg aggtgcaaaa aatcgccctc gcgaaagcac aaagcgacta
     7561 caaccgccgt gtgccgctgg gcaatgccaa cctgattggt cgcgaagagc tgcaacacgc
     7621 ccgcgacgcc gtcaccagtg cccaggcgca actggacgtc gctattcaac aatacaatgc
     7681 caatcaggcg atgattctgg ggactaaact ggaagatcag cctgccgtgc aacaggctgc
     7741 caccgaagta cgtaacgcct ggctggcgct ggagcgtacc cgtattgtca gtccgatgac
     7801 cggttatgtc tcccgccgcg cggtacagcc tggggcgcaa attagcccaa cgacgccgct
     7861 gatggcggta gttccagcca ccaatatgtg ggtggatgcc aactttaaag agacgcagat
     7921 tgccaatatg cgtatcggtc agccggtcac tatcaccacg gatatttacg gcgatgatgt
     7981 gaaatacacc ggtaaagtgg ttggtctgga tatgggcaca ggtagcgcat tctcactgct
     8041 tccggcgcaa aatgcgaccg gtaactggat caaagtcgtt cagcgtctac ctgtgcgtat
     8101 cgaactggac cagaaacagc tggagcaata cccgctgcgc attggtttgt ccacgctggt
     8161 gagcgtcaat accactaacc gtgacggtca ggtactggca aataaagtac gttcaacacc
     8221 ggtcgcggta agtaccgcgc gtgaaatcag cctggcacct gtcaataaac tgatcgacga
     8281 tatcgtaaaa gctaacgctg gctaatccag aggtgcgtgt gatgcaacag caaaaaccgc
     8341 tggaaggcgc gcaactggtc attatgacga ttgcgctgtc actggcgaca ttcatgcagg
     8401 tgctggactc caccattgct aacgtggcga tccccactat cgccgggaat ctgggctcat
     8461 cgctcagcca gggaacgtgg gtaatcactt ctttcggggt ggcgaatgcc atctcgatcc
     8521 cgcttaccgg ctggctggca aagcgcgtcg gggaagtgaa actgttcctt tggtccacca
     8581 tcgcctttgc tattgcgtcg tgggagtgtg gtgtctccag cagcctgaat atgctgatct
     8641 tcttccgtgt gattcagggg attgtcgctg ggccgttgat cccactttcg caaagtcttt
     8701 tgctgaataa ttacccgcca gccaaacgct caatcgcgct ggcgttgtgg tcgatgacgg
     8761 tgattgtcgc gccaatttgc ggcccaatcc tcggcggtta tatcagcgat aattaccact
     8821 ggggctggat attcttcatc aacgtgccaa ttggcgtggc ggtggtgttg atgacactgc
     8881 aaaccctgcg cggacgcgaa acccgcaccg aacggcggcg gattgatgcc gtggggctgg
     8941 cactgctggt tattggtatc ggtagcctgc agattatgct cgaccgcggt aaagagctgg
     9001 actggttttc atcacaggaa attatcattc ttaccgtggt ggcggtggtg gctatctgct
     9061 tcctgattgt ctgggagctg accgacgata acccgatagt cgatctgtcg ttgtttaagt
     9121 cgcgcaactt caccatcggc tgcttgtgta tcagcctcgc gtatatgctc tacttcggcg
     9181 cgattgttct gctgccgcag ttgttgcagg aggtctacgg ttacacggcg acctgggcag
     9241 gtttggcctc tgcgccggta gggattattc cggtgatcct gtcgccgatt atcggccgct
     9301 tcgcgcataa actggatatg cggcggctgg taaccttcag ctttattatg tatgccgtct
     9361 gcttctactg gcgtgcctat acctttgaac caggtatgga ttttggcgcg tcggcctggc
     9421 cgcagtttat ccaggggttt gcggtggcct gcttctttat gccgctgacc accattacgc
     9481 tgtctggttt gccaccggaa cgactggcgg cggcatcgag cctctctaac tttacgcgaa
     9541 cgctggcggg gtctatcggc acgtcgataa ccacgaccat gtggaccaac cgcgagtcga
     9601 tgcaccatgc gcagttgact gagtcggtaa acccgttcaa cccgaatgcc caggcgatgt
     9661 acagtcaact ggaagggctt gggatgacgc aacagcaggc atcaggctgg attgcccagc
     9721 agatcactaa tcaggggctg attatttccg ccaatgagat cttctggatg tcagccggga
     9781 tattcctcgt cctgctgggg ctggtgtggt ttgctaaacc gccctttggc gcaggtggcg
     9841 gcggaggtgg tgcgcactaa gtacaactaa gccagttcat ttgaactggc ttttttcaat
     9901 taattgtgaa gatagtttac tgactaaatg tgcagttcct gcaacttctc tttcggcagt
     9961 gccagttctt cgttgctgtt gatgcgtacg tcacgttcca gaatgctacg cgcaatatcc
    10021 tgcgcttcct gcaacgagtg catctggtaa gtgccacact ggtagacgtt cagctccggg
    10081 atctgattct gatcctgcac tttcagcacg tcttccattg ccgctttcca ggcatcagca
    10141 acacgctgct catctggcgt accaatcaga ctcatataaa aaccggtgcg gcagcccatt
    10201 ggcgagatat cgataatctc tacaccatta ccgttaagat ggttacgcat aaaaccagca
    10261 aacaggtgct ccagagtatg gctccctctt tctggcatca cttctttgtt cggcacgcag
    10321 aagcgcagat cgaacacggt gattgcgtcg ccatgcgggg tgttcattgt tttcgccacc
    10381 cgaactgcag gcgcttccat ccgggtatga tcgactgtga agctatctaa caacggcatt
    10441 tagccacctc cggtaatttt tttaaaaatt ttctgaactc tttcttccca ggcgagtctg
    10501 agtatatgaa agacgcgcat ttgttatcat catccctgaa ttcagagatg aaattttggc
    10561 cactcacgag tggccttttt cttttctgtc aggcgtgttt ttccagccac accgcaaacg
    10621 gttcggtatc agcggtttcc atttcctgct gacggcgttc agatgcctcg cgctcggcta
    10681 caaaatcctc ttcgcgcaga atttccaacg gctcttcacg cagcagatta cggtaggctt
    10741 ctgcaaacgc tttgcctgtt ccgccaatac cagtatcaat catagacctt aagatacggg
    10801 cagagaaagt cagatcggga ttatcgaagc aggcgaccag ttcatcacac actttctgat
    10861 acgctttgcc gccgttaatg ctatccaacg tttgcgcgac gcgtttcaga tcgcggaaca
    10921 gatctttacc cacctgcggt aacgggaact gcgcggtttc gcagccgata cccagcgtca
    10981 ggcccggttt gcgaccttcg aggatcaccc ggttccagtt aacgcgtgta caggcaagtt
    11041 cgctactgct catttccggt gcatcagcca gcgcacacca gaccataaac aggtcgagga
    11101 atcgcacctg ctgttcatct acaccaatcg gcgagaacgg gttgatgtcc agcgaacgca
    11161 cttcaatata ttcaatgccg ccacgtaaca gcgcatcaga aggtgactcg ccgctgcggg
    11221 taacgcgttt tggacgaatc ggcgcataca gttcgttttc aatctgcagc acgttgctat
    11281 tgatttgcag cctcttaccg tctttctcaa taccaatctt cgcgtactct tccgatggcg
    11341 ttttgattgc ctgtttaagg cccgctacgt actcgtaaag atcgttgaag gtaataccaa
    11401 gattgctttg cgatttattg gtatagccga gatcgctcaa acgaagagag gtcgcatacg
    11461 gcaggtaata cataccgcac tcggttttct caaacggcag cgacgttggt tttccttgca
    11521 ggaaagaaga acaaatcgcc ggagatgcac caaacagata aggaatgacc caaccgaaac
    11581 gatagtaatt gcggataacg cggaaatagc ccgcagaaat tttctctttg gcatcagtgc
    11641 ccgagatatc acagcacttc gcttgccaga atgccattgg caaagagaaa ttgtagtgca
    11701 cgccggaaat ggtttgcatc agcgcgccgt agcgattttt cagcccttca cgatacagcg
    11761 ttttaaagcg tccggtgtta gaagtgccgt actgtgccag ttcgatgtcc tgaccttctg
    11821 cgatgtagca tggcatactt aacggccaca tccgctcatc gcccatattg cgcgccgtat
    11881 aacgatgcag atcgcgcata aaggtcaaca tatgttcaat atcaccatcc actggtgtaa
    11941 tgaattccag caatgcttcc gcaaaatcgg tagtaatcca tttgtgcgtc agtgcggaac
    12001 ctaatgcttc aggatgacct gttgttgcct gtgtgccatc agcattaaca cgcaaagttt
    12061 cgcgctccag cccacgctgt atccccttta acgcctgagg atgtttttcc agccaggcca
    12121 gcgcctgtga tacgtccggg atcaaattga cctcccgcct gtcaaaatcg ttttaattag
    12181 cataactgta atggtgacca tatgtgcagg cctacaatta gtgccaccac atcatgccct
    12241 gaacggtagc tgctgcaact gcaacatagc gtaaagcttt accaaggcac aaaaaaaaga
    12301 ttaccggtcc ccacgagatg cgcatccatc ccgctaacag acacagtaaa tcgccaacca
    12361 cgggcatcca gcttaataat agcgtgactg caccatagcg tttcagccag ccagtagctt
    12421 tctcttgcca gcgcgatgtt ttacgcaatg gaaagaaacg cccaaggata acgttagtta
    12481 accctccaag gctattaccc attgttgctg ttaaaactaa aacccaggga taactgatcc
    12541 cggaaagcaa cattgccacc agcacgactt cggagttgcc gggtaatagt gtagcgctga
    12601 gaaaactact ggcaaacaac gagaaaagcg ataacgcttc actcacagca agcgaacatc
    12661 cacggcgtcc atgcctgctg cacgggccgc ctgaataccg aaatcggcat cttcaaagac
    12721 cacacactgc gtcggttgca cgcccatacg ctgcgcgcac aacaaaaatg tgtctggcgc
    12781 gggtttatgg tgtttgacgt gatcagcagc gacgacggcg tcaaaataac ggcgtaatcc
    12841 caggtgcgcc agcaatgcct cagcgatggc gctttcactc cccgttccta cagccattgg
    12901 gcgacgacca tgccaacttt tcaccacttc aacaagagga agcggctcga cactatccag
    12961 cagcatactt cttactgctt ctgttttttc acgcgctaac gcatgcgggg cgagatcggc
    13021 ctgattcagc tcaataattg cctgagcaat acgccaggtg ggcgatccat taagcgcaat
    13081 cattgcctga acatcgtact gaagaccgta gtgccctaat acttcgcgcc acgctttacg
    13141 gtgcgtaggc tccgtatcca ggaatatcaa aaattaaacc tgcataacgc tcgtacatgg
    13201 tcttctcgca agtcgaaaaa tatgacgcta ctttagcgta attgcttgat tttgtcgctg
    13261 atggcgaagg agaagaaaat tcaggaaatg gataaagtag ttatttagaa atgagatatt
    13321 tttgaaggaa atttttggga gaagatggtg catccgggag gattcgaacc tccgaccgct
    13381 cggttcgtag ccgagtactc tatccagctg agctacggat gcatcgggaa aatttatttt
    13441 actgctgata ttgatatcgc tactaaagcc atatcaagta agagatggtg catccgggag
    13501 gattactcgc cttgcggctc gcccttcggg ccgttgctaa agcaacgtta tcatccctgg
    13561 tgcctgcggt taattccgct acctcttcga taccttcatt gctgaagatt tcggagaata
    13621 tggtgcatcc gggaggattc gaacctccga ccgctcggtt cgtagccgag tactctatcc
    13681 agctgagcta cggatgcatc gggaaactta ctttactgca gattttttga taccgctact
    13741 aaagccgtat caagtaagag atggtgcatt cgggaggatt actcgccttg cggctcgccc
    13801 ttctggccgt tgctaaagca acgttatcct ccctggtgcc tgcggttata ccgccacctc
    13861 ttccatacct tcatcgctga aagtacgtag aatatggtgc atccgggagg attcgaacct
    13921 ccgaccgctc ggttcgtagc cgagtactct atccagctga gctacggatg caaatggcgg
    13981 tgaggcgggg attcgaaccc cggatgcagc ttttgaccgc atactccctt agcaggggag
    14041 cgccttcagc ctctcggcca cctcaccaca cgcctcttac gagtgcttcg aagaacttgt
    14101 ttatcgctca tcgtcgctgc gtggcgcaca tattactttc tgagacttat aagtcaaaca
    14161 atttttccca cacttttatc gtttgcacac ttcacgctca attagtctgt aaaaacgtca
    14221 aaaagagtgt tttatctaca gaaaaacgga ggtctggcag atagcagtaa tgcaaaaaaa
    14281 tggagactta agttgaatga acgggagtaa agcgaaaaga ctatagagtg aaggagaaat
    14341 tttgagggtg cgtctcaccg ataaagatga gacgcggaaa gattagtaac tggactgctg
    14401 ggatttttca gcctggatac gctggtagat ctcttcacgg tgaacagaaa cttccttcgg
    14461 ggcatttacg ccaatacgta cctggttgcc cttcacccct aaaactgtca cggtgacctc
    14521 atccccaatc atgagggtct caccaactcg acgagtcaga atcagcattc tttgctcctt
    14581 gaaagattaa aagagtcggg tctctctgta tcccggcatt atccatcata taacgccaaa
    14641 aagtaagcaa tgacaaacac attacatgta agcagtcatg gcattacatt ctgttaaacc
    14701 taagtttagc cgatatacac aacttcaacc tgactttatc gttgtcgata gcgttaatgc
    14761 gaatgccgtg aagcgagtcc acggcattgc ctgacgctta tattattgca atttcgcgct
    14821 gacccagcct ttcacactgg ctaacgctgc aggtaaggcc gcagcatccg taccaccggc
    14881 ttgcgccatg tcaggacgtc caccaccctt gccgcccacc tgctgagcga ccataccaat
    14941 cagttcccct gctttcacac gatctgtgac gtccttagat acgcctgcaa tcagagaaac
    15001 cttaccttcg gctaccgttg ccagcacgat aattgtcgac cccagctgat tttttaaatc
    15061 gtcaaccatg gtacgcaaca ttttcggctc aacaccgcta agctcgctaa ccaacagctt
    15121 aacaccatta acatcaattg ccttactgga aatatttgcg ctctcctgtg cggcagcttg
    15181 ttctttaagc tgttgtagtt ctttttctaa ctgacgcgta cgttccagta ctgagcgcac
    15241 tttatccgcc agattattgc tatcgccttt cagcagatgc gcgacttcgc ttaagcgatc
    15301 gctgtctgca tgaacggtgg tgatagcgcc ttctccggtt accgcttcga tacgacgaac
    15361 gcctgcagca gtacccgatt cagagatgat gcggaacaga ccaatatcac cagtgcggct
    15421 ggcgtgagta ccgccacaca gctcggtgga gaaatcgccc atgctcagca cgcgtacacg
    15481 ctcatcatac ttctcgccga acagcgccat cgcacctttc gctttcgccg cttcgagatc
    15541 catgatgttg gtttcgatcg gcaaattgcg acgaatctgt gcgttcacca ggtcttcgac
    15601 cgcacgaatc tcttccggtt tcatcgcttc gttgtgtgag aagtcgaagc gcagcacctt
    15661 gtcgttaacc agtgaacctt tctgcgatac atgagtcccc agaacctggc gcagcgcagc
    15721 gtgcatcagg tgcgttgcgg agtgattcag acgaatacgg gcgcgacgag cctcatcaac
    15781 atcagcctgc acagcgtcgc ccactttcag agaacccgca gcaagtttac cgatgtgacc
    15841 aatcgcctgg ccgtatttct gcgtatcttc caccgcgaag gagaagttag cgtctttcag
    15901 ttcgccttta tcaccaacct gaccgccgga ttccgcatag aatggtgttt gatctagcac
    15961 gaccacagct tcctggcctg cattgatggc atcaaccgct ttaccatcaa caaacagcgc
    16021 ggtcactttg ccgttcagtt ccagatggtc atagccttta aattcagatg cactatcaac
    16081 acggatcatt gcgttgtaat cggcaccaaa gccgctggct tcgcgcgcgc gacgacgctg
    16141 ctcttccatt gctgcttcaa aaccagcttc gtcaactttg atgttgcgct cacgacaaac
    16201 atcagccgtc aggtcaaccg ggaagccata ggtgtcgtac agacggaaag ccgtttcacc
    16261 atccagcgta tcaccagaaa gttttgccag ctcttcatcc agcaacgcca gaccgcgctc
    16321 cagagtacgg gcaaactgct cttcttcagt cttcagcacc tgctcaacct gcgcctgctg
    16381 gcgtttcagg tcttcacccg cagagcccat aacgtcgatc agcggaccaa ccagtttgta
    16441 gaagaaggtt tctttcgcgc cgagcatatt gccgtgacgc actgcgcgac gaatgatacg
    16501 acgcagtaca taaccacggt tttcattgga cggcattacg ccatccgcga tcaggaacgc
    16561 acaagaacga atgtggtcag cgattacgcg cagcgattta ttgctcagat cggtcgcgcc
    16621 agtgactttc gctaccgcct ggatcaacgt gcggaacagg tcgatgtcat agttagagtt
    16681 aacgtgttgc agcaccgcag caatacgctc cagacccata ccggtatcta cagacggctt
    16741 cggcagcggt tccatcgtgc catctgcctg gcggttgaac tgcatgaaga cgatgttcca
    16801 gatctcaatg tagcggtcgc cgtcttcttc cggacttccc ggagggccac cccaaatgtg
    16861 gtcgccgtga tcgtagaaga tttcggtgca cgggccgcac ggaccagtgt cacccatctg
    16921 ccagaagttg tcagatgcgt atggcgcacc tttgttatcg ccgatgcgaa taatacgttc
    16981 gcgcgggatc ccgacttctt tttcccagat ttcgtaggct tcgtcgtcgc tttcatagac
    17041 ggtaacccac agacgctctt tcggcagggc aaaccatttt tcgctggtca gcagttccca
    17101 tgcaaactga atggcatcgt gtttgaaata gtcgccgaag ctgaagttgc ccagcatttc
    17161 gaagaaggta tggtgacgcg cggtgtaacc gacgttttcc aggtcgttgt gtttaccacc
    17221 cgcacgcacg cagcgttggg aagtggtagc gcgggaataa ttacgcttgt cgagcccaag
    17281 gaacacatcc ttgaactgat tcatcccggc gttggtaaac aacaaagttg ggtcgttatg
    17341 gggtaccagg gagctgctgg caactacctg atgtccctta ctatggaaaa agtcgagaaa
    17401 cgcctgacgg atctcagcgg tgctcttgct cataattatc ctgaaatcaa gctaacgaaa
    17461 tatcgccacc agctccagcg tgtcttaacc gccgggctgg taactgaaaa gtgggaataa
    17521 gataagtttt cttgactggg aagtaaaata ccgtatgcgt tcagtcggca aaatttcgcc
    17581 aaatatcctg gatatcttcc atcagatagc cacgatagag cagaaaacgc tggatcttaa
    17641 ctttttctga aaagacagtt ggcaaaggtt catcatattt tcgcgtcgcc tgatcgcgcg
    17701 ccagtgcgca ccagtcgatg tcacattcac gcatcgcttt ttctgtcgct tcgcgggaaa
    17761 tacctttctg attcagttcc tgacgaatac gtgcaggtcc ataacctttg cggctacggc
    17821 tggcgataaa gcgcgcaaca aatcggctgt catcgagata gccatgttca tggcaccatg
    17881 caataacgcg ctcgtaatct tctgccgtag catcaatctc ttctgggcca tttttgccca
    17941 taatcggtgc cgcgagttta cgtcgcagtt cttgctcact gtgatcgcgc accgccagaa
    18001 tgcgtaccgc acgatccaac aggcgagcat atgccgggcg acgggacgtt gattctgtca
    18061 tggcatatcc ttacaactta aaaaagcaaa agggccgcag atgcgaccca ggttttgctg
    18121 ataaacagat ttaatagtca atgagtgtgc agaatgttcc cgcaggccca attcgttaga
    18181 ggatcgaggt gagagtaatt tttcacgcca gtgctggcct gttcccctca ccctaaccct
    18241 ctccccaaag gggcgagggg accgtccgtg cacacattat ctattatcat caataacgaa
    18301 cgattaaaaa tcttcgttag tttctgctac gccttcgctg tcatctacag agaaatccgg
    18361 cgttgagttc gggttgctca gcagcaactc acgtactttc ttctcgatct ctttcgcggt
    18421 ttccgggtta tctttcagcc aggcagttgc attcgcttta ccctgaccga tcttctcacc
    18481 tttgtagctg taccacgcgc ctgctttctc gatcagcttc tcttttacgc ccaggtcaac
    18541 cagttcgccg tagaagttga taccttcgcc gtagaggatc tgaaattcag cctgtttaaa
    18601 cggtgcagcg attttgttct tcaccacttt cacgcgggtt tcgctaccca ccacgttttc
    18661 gccctctttc accgcgccga tacgacggat gtcgagacga acagaggcgt agaatttcag
    18721 cgcgttacca ccggtagtgg tttccgggtt accgaacatc acaccaattt tcatacggat
    18781 ctggttgatg aagatcagca gcgtgttgga ctgcttcagg ttacccgcca gcttacgcat
    18841 cgcctggctc atcatacgtg ccgcaaggcc catgtgagag tcgccgattt cgccttcgat
    18901 ttccgctttc ggcgtcagtg ccgccacgga gtcaacgacg ataacgtcta ctgcaccaga
    18961 acgcgccagg gcgtcacaga tttccagtgc ctgctcgccg gtgtccggct gggagcacag
    19021 caggttgtcg atatcgacgc ccagtttacg tgcgtagatt gggtccagcg cgtgttcagc
    19081 atcgataaac gcacaggttt taccttcacg ctgcgctgcg gcgatcacct gcagcgtcag
    19141 cgtggtttta ccggaagatt ccggtccgta gatttcgacg atacggccca tcggcagacc
    19201 acctgcccca agcgcgatat ccagtgaaag cgaaccggta gagatggttt ccacatccat
    19261 ggaacggtct tcacccaggc gcatgatgga gcctttacca aattgtttct caatctggcc
    19321 cagtgctgcc gccaacgctt tctgtttgtt ttcgtcgata gccattttta ctcctgtcat
    19381 gccgggtaat accggatagt caatatgttc tgttgaagta attatactgt atgttcatac
    19441 agtatcaagt gttttgtaga aattgttgcc acaaggtctg caatgcatac gcagtagcct
    19501 gacgacgcac cgcatcacgg tcgccgctga agcattcccg ccgggtaatg ccttcaccgc
    19561 gggcagtggc aaaagcaaac cagacggtgc cgacaggctt ctcttcactg ccgccatccg
    19621 gcccggcgat accactaata gacacggcat aatcagcacg agccgctttc agtgcgccta
    19681 tcaccatttc caccacgacg ggttcactca ccgcgccatg ctgcgccagc gtctcttcgc
    19741 gtacgccgat catctgcgct ttggcttcgt tactgtaggt gacaaatccg cgttcaaacc
    19801 aggcggagct accggcaata tcggtaatca ctttcgctac ccaaccaccg gtacaagact
    19861 cggcagttgt tacggttgcg ccacgggctt tcagcgcctg cccaacctgt tcacttaact
    19921 gcatcagttc actgtcagtc atcacaacct ctgtcagtca aaaatttatg ccggacaaga
    19981 tagcactttc gtcaggaaga tggtgttggc gttgcaattt tacgaggagg attcagaaaa
    20041 aagctgatta gccagaggga agctcacgcc cccctcttgc aaatagttac tgcacgcgcg
    20101 ccagcgccac ggcttgtcct aactgccaga ccgccattgc gtaatgggtg ctgtggttat
    20161 aacgggtaat ggtgtagaag ttcggcagac cgtaccagta ctggtaaccg gtaccgacat
    20221 ccagacgcag caggctggct tgttgatggt tgcccagcgg ctgctgtggc gttaaacctg
    20281 ccgtggcaag ctgcgaaatg ctgtacctgg ttttgaagcc atttggcaag cctggagcct
    20341 gaccgtttgc cattaccgcg acctgatcgc ctttcaccca gccgtgcgct ttgaaatagt
    20401 tcgccacgct accgatcgca tcaaccggat cccacaggtt gatatgcccg tcgccgctga
    20461 aatctaccgc atattgtttg taagacgacg gcataaactg tccgtagccc atcgccccgg
    20521 caaaggaacc tttcagattg agcggatcgt cctgctcgtc gcgcgccatc agcaggaagg
    20581 tttccagctc gccagagaaa tactccgcgc ggcgtgggta gttaaatgac agcgttgcca
    20641 gcgcatcgag gatgcgagtt ttccccatca cgcgccccca gcgggtttca acgccgataa
    20701 tcccgacgat aatttccggc ggtacgccat acacctgcca cgcgcgattc aacgcatctt
    20761 catactgatt ccagaaaacc acaccgttct gcacgttgtc cggcgtaata aattttttgc
    20821 gataacgcag ccatgcgccg ttcggacctg atggcggttt caccgatgtg gttggtgcct
    20881 ggttatccat cagccgcagt accgaatcca gacgcttcgc ctgggagaga atttcctgca
    20941 actgctgacg atcgaaaccg tgtttgttca ccattttgtc gatgaactgc tgggcattcg
    21001 ggttattagc gaaatcgccg cccatctgca tcacattgtg ctgcggctca agcaggaagc
    21061 cgccagacgg cgttccggtg gtcgtttcag tctcagtagg ttttggcttg ctgctacagg
    21121 cggcaagcaa cacaaaaagg ggaagcaatg ttacataacg acgcttgaac atgagggggc
    21181 catttaacag attcaaccag gggcaagtat ggtaaagcat cacgccccgc acaaggaagc
    21241 ggtagtcact gcccgatacg gactttacat aactcaactc attcccctcg ctatcctttt
    21301 actcaaactt ccaaattaaa atatttatct ttcattttta gattaaaata acacttttaa
    21361 atctttcaat ctgattagat taggttgccg tttggtaata aaacaataaa tcctgaagga
    21421 gagaacaatg atagaaacca ttactcatgg tgcagagtgg tttatcgggc tgttccaaaa
    21481 gggcggagag gtgtttaccg ggatggtgac cggcattctt ccgctgttga ttagcctgct
    21541 ggttatcatg aacgcactga ttaattttat cggtcagcat cgtattgaac gttttgctca
    21601 acgttgcgcc ggtaaccctg tttcccgtta cctgctgcta ccgtgcattg gcacgtttgt
    21661 cttttgcaat ccgatgacct taagccaggg tcgctttatg ccggaaaagt acaaacccag
    21721 ctactacgcg gcggcctctt atagctgcca ctcaatgaat ggcctctttc cccatatcaa
    21781 ccctggcgaa ctgtttgttt atcttggcat tgccagcggt ctgacaacgc tgaacctgcc
    21841 acttggccca ctggcggtga gctatctgct ggttggtctg gtcaccaact tctttcgcgg
    21901 ctgggtgacc gatctgacca ccgccatttt tgagaaaaag atgggcattc aacttgaaca
    21961 aaaagttcac ctggcaggag caacatcatg acgcgtattc ggatcgaaaa aggaacgggt
    22021 ggctggggcg gcccgcttga gctggaagcc acgccgggca aaaaaatcgt ctatatcacc
    22081 gccggtaccc ggcctgcgat tgttgacaaa ctggcacaac ttactggctg gcaggctatt
    22141 gacggattta aagaaggtga acccgcggag gcggaaattg gtgtcgcggt aatcgactgt
    22201 ggcggcacat tacgctgcgg catctatccg aaacgacgta ttcccaccat taatatccac
    22261 tcgacgggca agtccggtcc gctggcgcag tacattgtgg aagatattta tgtctctggc
    22321 gtaaaagaag aaaacatcac tgtagtgggt gatgcgacac cacaaccctc ttccgtgggc
    22381 cgtgactatg acaccagtaa gaaaatcacc gaacaaagcg atggtttact ggcgaaggtg
    22441 ggaatgggca tgggcatggg gtccgccgtt gcggtgctgt ttcaatctgg tcgtgacacc
    22501 atcgacactg tattaaaaac cattctgccg tttatggcat tcgtctcggc gctcattggc
    22561 atcattatgg cttctggcct tggtgactgg attgcccacg gtcttgctcc gctggcgagc
    22621 catccactgg gtctggtcat gctggcgctc atctgctcct tcccactgct ttcacctttc
    22681 ctcggcccag gcgcagttat cgcacaggtt atcggcgtat tgattggcgt gcagattggt
    22741 ctcggcaata ttccgccgca tctggcttta ccggcactgt ttgccatcaa cgcgcaggcg
    22801 gcctgcgact tcatcccggt cggtttgtcg ctggcggaag cccgtcagga cacggttcgc
    22861 gtcggtgtcc cttctgtact ggtgagccgc tttttaaccg gcgcaccgac tgtactgatc
    22921 gcctggtttg tctccggttt tatctatcaa tagaggctga aacatgaccg ttatttataa
    22981 gaccaccatc acccgtatcg gcgcgagtgc cactgacgcc ctcagcgacc agatgctcat
    23041 cacctttcgt gaaggcgcgc cagcggacct cgaagagtat tgcttcattc attgccacgg
    23101 cgagttgaaa ggtgcactcc atcccggttt gcaatttacg ctcgggcagc atcgctatcc
    23161 ggtgaccgct gttggcagcg tggcggaaga caaccttcgc gaactgggtc atgtcaccct
    23221 gcgcttcgat ggtttaaacg aagcggaatt tccgggcact gtccatgtgg caggccctgt
    23281 acccgacgat atcgcgccgg gatcggtttt gaagtttgaa tctgttaagg agtaaaaaat
    23341 gaatcaggtt gccgttgtca tcggtggtgg gcaaacctta ggcgcgttcc tgtgccacgg
    23401 tctggttgcc gaggggtatc gcgtcgcggt tgtcgatatt cagagcgaca aagccgcaaa
    23461 tgtggcacaa gaaattaacg ccgaatatgg tgaaagtatg gcgtacggtt ttggtgctga
    23521 cgccactagc gagcaaagcg ttctggcgct ctctcgtggg gtagatgaaa tctttggtcg
    23581 cgtggatttg ctggtctata gcgccggaat agcaaaagca gcctttatca gcgacttcca
    23641 gctcggcgat tttgaccgtt cgctacaagt gaatctggtg ggttatttcc tgtgtgcccg
    23701 tgaattttcg cgtttgatga tccgcgacgg gattcagggt cgcattattc agatcaactc
    23761 gaaatccggc aaagtgggca gcaaacacaa ctctggctac agcgcagcga aatttggtgg
    23821 cgtcgggctg actcaatcac tggcgctgga tctggtggag tacggcatta cggtgcattc
    23881 actgatgctc ggtaacctgc tgaaatcgcc gatgttccag tcactgttgc cacaatacgc
    23941 gaccaagctg ggtatcaaac cggatcaagt cgagcagtat tacattgaca aagtaccgct
    24001 caaacgcggc tgcgattatc aagatgtgct gaatatgctg ctgttctacg ccagtcctaa
    24061 ggcgtcgtac tgcaccggac agtcgatcaa tgtcaccggc ggtcaggtga tgttctgatc
    24121 aacagcggag atccattaag gatctccgtg agactataga atgcctgatg cgctacgctc
    24181 atcaggcata caggacttcc gccactacat taaggaaaag ttatggtatc cgcactcatc
    24241 accgtcgccg ttatcgcctg gtgtgcgcaa ctggccttag gcggctggca aatttctcgt
    24301 tttaaccgtg ccttcgacac actatgccag caagggcggg ttggcgtggg tcgttccagc
    24361 gggcgcttta aaccgcgggt cgtggtcgcc atcggctgga cgatcagcag cgcatcgtcg
    24421 acaccttgtt tatgaaagga ctgaccgtct tcgcccgacc gcaaaaaatt cccgcaatta
    24481 ccggtatgca tgcgggtgat ttacagcccg atgtgatctt tccccatgat ccactatcac
    24541 agaatgctct atcattggcg cttaaactga aacgtggata atttcgttgt gaatgttact
    24601 tgcttgcgaa gttatcattt tgaaacctaa atcaggtaat cacgcccatg aaacctcgtc
    24661 agcgtcaggc cgccattctg gagtatctgc aaaagcaggg taaatgctcg gttgaagaat
    24721 tggcgcaata ctttgacacc acaggcacaa ccattcgcaa agatctggtc attctggaac
    24781 atgccggaac cgtcattcgt acttatggcg gagtggtgtt gaataaagag gaatccgatc
    24841 cgcctatcga tcataaaaca ctcatcaaca cccacaagaa agagctgatt gcagaagctg
    24901 ccgttagttt tatccatgat ggcgattcga tcattcttga tgctggcagt accgttttgc
    24961 agatggttcc cctgctctcg cgctttaata acatcacggt gatgaccaac agcctgcata
    25021 tcgtcaatgc gctatccgaa ctggataacg aacaaactat cctgatgcca ggcggaacgt
    25081 ttcgtaaaaa atcggcctca tttcacggac agctggcaga gaatgccttc gaacatttca
    25141 gtttcgataa attgtttatg ggcaccgacg gcatcgatct caatgcgggc gtaaccacct
    25201 tcaacgaggt ttataccgtc agtaaggcaa tgtgcaatgc cgcgcgcgaa gtgattttga
    25261 tggcggactc atcaaagttt ggccgtaaaa gccccaacgt agtttgcagt cttgaaagcg
    25321 tcgataagct gattaccgac gcaggtatcg atccggcgtt tcgtcaggcg ctggaagaga
    25381 aagggatcga tgtgatcata accggagaga gcaatgagtg aagcactact gaacgcggga
    25441 cgtcagacgt taatgctgga gttgcaggaa gcaagccgtt taccggaacg tctgggcgat
    25501 gattttgttc gcgccgccaa tatcatcctg cactgcgaag gcaaagtggt ggtttcggga
    25561 attggcaaat cgggccacat tggtaagaaa atcgccgcaa cacttgccag taccggcaca
    25621 ccggcttttt ttgtccatcc ggcagaagca ctgcacggcg atctggggat gattgaaagc
    25681 cgcgatgtga tgctgtttat ctcttactcc ggtggcgcga aggaactgga tctgattatt
    25741 ccgcgtctgg aagataaatc tatcgcgctg ctggcgatga ccggcaaacc gacgtcaccg
    25801 ctgggcctgg cggcaaaagc ggtgctggat atctccgtag aacgcgaagc ctgcccgatg
    25861 caccttgcgc cgacctccag caccgtcaat accctgatga tgggtgacgc gctggcgatg
    25921 gcggtcatgc aggcgcgcgg atttaatgaa gaagattttg cccgctccca cccagccggg
    25981 gcactgggcg ctcgcttgct gaataaagtg catcatctga tgcgccgtga cgatgccatc
    26041 ccacaggtgg cgttaaccgc cagcgtgatg gatgcgatgc tggaactcag ccgcaccggt
    26101 ctggggctgg tggcggtatg tgacgctcaa caacaggtac aaggcgtctt taccgacggc
    26161 gatttacgtc gctggctggt aggcggcggc gcactcacca cgccagttaa tgaagcgatg
    26221 acgacaggcg gcaccacgtt acaggcgcaa agtcgcgcca tcgacgccaa agagatcctg
    26281 atgaagcgca aaatcactgc cgcaccggtg gtggatgaaa acggcaaact caccggcgca
    26341 attaacctgc aggatttcta tcaggccggg attatttaat ccttcattcc cagacgtttc
    26401 gccagccgat gcaggttggc gacgtcggtt tccagcatcc gcgcgcaggc agcccagtta
    26461 tgatgatttt gtgccagtgc ctggcgaata gtttcacgct ggaacgcttc tgtcgcttca
    26521 cgcaggtttt gcttaacaac gggcaccgcc gccgcttctg gcggcggcaa cgtcacctca
    26581 ggaaaagcaa aatgttgcgc ctcaagaatc acttcatcgc cgttgcgggt ggctctcgcc
    26641 agcactaccg cccgatgaat agcatgttcc agttcgcgca cgttccccgg aaaacgatag
    26701 tgttgcagta aatttcgcgc tccggcactt aataccacgc gggagagccc cagccgcaaa
    26761 cgacactgtt cgcagaaata ccccgccagc agaatgacat catcgccccg ctcacgcagc
    26821 ggcggcaccg aaagtggaaa cacgctcagg cgatgaaaca agtcagcgcg aaatcgccct
    26881 gccagcacct cttcgcgtaa gtcgcggtta gtcgccgcca gcacgcgcac atcgacccgc
    26941 aaactacggt catcgccaac gcgctgaata tcgccatact gcaacaccct cagcagcttg
    27001 gcctgcaatg ccaacgacaa ctcgccgatc tcatccagaa acagagtgcc gttatccgcc
    27061 atttcaaact tcccgctgcg gttactgata gcgccagtaa acgctccttt cacatgcccg
    27121 aacaactcac tttccgccac actttccggc agtgcagcac agttgagata gaccagcgga
    27181 ttcaccgccc gtggcgaggc ttcatgaatc gctttcgcca ccagctcctt accggttccc
    27241 gtctcaccgc tgatcaggac gttgagatcg gacgccgcca caatctcaat ctcttttttc
    27301 agttgcgtca tgccagggga caagccaatc atctgcgtct gtttcaccgc ttcaaacggc
    27361 gtggcatcgc ctggcatcat attctggctt tccagttgtt caatcagcaa cgcattgctt
    27421 aacgctcccg ccgccagcgc agcaatcagc cgtagctctt cgtcgctgaa aacatcgaac
    27481 tgatcgggct gcatcccgtc gagcgtcagt gcgccgatca ggttttgccc ggcaaacaat
    27541 ggcagaccaa cgcaggcgtg aaccttcaga ctctcctgcc caggaatcaa accgtcatag
    27601 ggatcgggca attcgctgtc tgcgggaaag cgcaccacat ccccggcgcg ggcaatcgct
    27661 tccagccgtg gatgcccttc cagcgcaaag cgtctaccga gtacaccctt tgccagaccg
    27721 tcgatggcaa gcggaataaa ctgccgcgaa tcgtaacgta gcaacgcaga cgcatcgcac
    27781 tccagcacct gacgtagcgt ggtgatcagg cgctgaaaac gatcctgatg accaatccca
    27841 cgctgcaatt cgatggcgat attcgccagc acatcaacgg aaaaactcat ctttgcctca
    27901 ctgtcaattt gactatagat attgtcatat cgaccatttg attgatagtc attttgacta
    27961 ctcattaatg agcataattt tatttataga gtaaaaacaa tcagataaaa aactggcacg
    28021 taatctgcaa ttagcaagac atctttttag aacacgctga ataaattgag gttgctatgt
    28081 ctattgtggt gaaaaataac attcattggg ttggtcaacg tgactgggaa gtgcgtgatt
    28141 ttcacggtac ggaatataaa acgctgcgcg gcagcagtta caacagctac ctcatccgcg
    28201 aagaaaaaaa cgtgctgatc gacaccgtcg accataaatt cagccgcgaa tttgtgcaga
    28261 acctgcgtaa tgaaatcgat ctggcggata tcgattacat cgtgattaac catgcagaag
    28321 aggaccacgc tggggcgctg accgaactga tggcgcaaat tcccgatacg ccgatttact
    28381 gtactgccaa tgctatcgac tcgataaatg gtcatcacca tcatccggag tggaatttta
    28441 atgtggtgaa aactggtgac acgctggata tcggcaacgg caaacagctc atttttgtcg
    28501 aaacgccaat gctgcactgg ccggacagca tgatgactta cctgacaggc gacgcggtgc
    28561 tgttcagtaa cgatgctttc ggtcagcact actgcgacga gcatctgttc aacgatgaag
    28621 tggatcagac ggagcttttc gagcagtgcc agcgttacta cgccaatatc ctgacgccgt
    28681 tcagccgcct ggtaacaccg aaaattaccg agatcctggg ctttaactta ccagtcgata
    28741 tgatagcgac ctctcacggc gtggtatggc gcgataaccc gacgcaaatt gtcgagctgt
    28801 acctgaaatg ggcggctgat tatcaggaag acagaatcac cattttctac gacaccatgt
    28861 cgaataacac ccgcatgatg gctgacgcta tcgcccaggg gattgcggaa accgacccac
    28921 gcgtggcggt gaaaattttc aacgtcgccc gaagcgataa aaacgaaatc ctgaccaatg
    28981 tcttccgctc aaaaggcgtg ctggtcggca cttcgacgat gaataacgtg atgatgccga
    29041 aaatcgccgg gctggtggag gagatgactg gtttacgctt ccgtaacaaa cgcgccagtg
    29101 ctttcggctc tcacggctgg agcggcggtg cggtggatcg tctttccacg cgcctgcagg
    29161 atgcgggttt cgaaatgtcg cttagcctga aagcgaaatg gcgaccagac caggacgctc
    29221 tggagttatg ccgtgaacac ggtcgcgaaa tcgcccgtca gtgggcgctc gcgccgctgc
    29281 cgcagagcac ggtgaataag gtagtcaaag aagaaacctc tgccaccacg acggctgacc
    29341 tcggcccacg gatgcagtgc agcgtctgcc agtggattta cgatccggca aaaggcgagc
    29401 caatgcagga cgttgcgcca ggaacgccgt ggagtgaagt cccggataac ttcctctgcc
    29461 cggaatgctc cctcggcaaa gacgtctttg aagaactggc atcggaggca aaatgagtaa
    29521 cggcattgtg atcatcggtt cgggcttcgc cgcccgccaa ctggtgaaaa atattcgcaa
    29581 acaggacgcc actattccat taaccctgat tgccgccgac agcatggatg agtacaacaa
    29641 acctgacctc agccatgtta tcagtcaggg gcaacgtgcc gatgacctta cccgccagac
    29701 ggcgggtgaa tttgccgagc agtttaatct gcacctgttt ccacaaacct gggtgacgga
    29761 tatcgatgcc gaagcccgtg tggtgaaaag ccagaataat cagtggcaat acgacaagct
    29821 agtactggca accggtgcca gtgcctttgt cccgcctgtg cctgggcgtg agttaatgct
    29881 gacgttaaat agtcagcaag agtatcgcgc ctgtgaaacg caactgcggg atgcccgacg
    29941 cgtgttgatt gttggcggtg gtttgattgg tagcgaactg gcgatggatt tttgtcgtgc
    30001 aggcaaagcg gtcacgctaa tcgacaacgc tgccagtatt ctggcgtcgt taatgccacc
    30061 ggaagtaagc agccgcttgc agcatcggtt gacggagatg ggcgttcatc tgctgttgaa
    30121 atctcagtta caggggctgg aaaaaacgga ttctggcatt ctggcaacgc tggaccacca
    30181 gcgtagtatc gaagtggatg cggtaattgc cgccaccgga ctgcgcccgg aaacagccct
    30241 ggcacgacgc gccgggctga cgattaatcg cggcgtttgc gtcgatagtt atctgcaaac
    30301 cagtaatgac gatatttatg cgctgggcga ttacgcggaa atcaacggtc aggtactgcc
    30361 attcctgcag ccgattcaac ttagcgcgat ggtgctggca aaaaatcttc tcggcaataa
    30421 cacgccgctg aaactaccga cgatgctggt gaaaatcaaa acgccggaat taccgctgca
    30481 tctggcaggc gaaacccagc gtcaggattt acgctggcaa attaataccg aacgctaggg
    30541 aatggtggct cgcggtgttg acgatgctga ccagcttcgc gcctttgtgg tcagtgagga
    30601 tcggatgaaa gaggcatttg gattgttgaa aacattgccg atgtaggtgg gctactgtgc
    30661 ctaaaatgtc ggatgcgacg ctagcgcgtc ttatccgacc tacggggacg catgtgtagg
    30721 ccggataagg cgtttacgcc gcatccggca atggtgtcca aatgcaacac gttttatccg
    30781 ttctggactt cacccgctaa ccaacgcgcc gcagcaataa ccccctgccc cagagacaaa
    30841 ccgccatcac ccgccggtaa actctgtgga aagagcaatg tgaaatcagc gagataatgc
    30901 gccagacgtg cacgcagcaa acggttatga ataaccccgc cgctaaatac cagcgtagtg
    30961 ataccacgca tcgtggcctg ctcacgcatc aacgcggcaa aaccctgcgc cagcgcatca
    31021 tgaaacgccc acgcgcgttg attaacctgt gcctgccagt tcagccactg ctgccagaaa
    31081 gcggcgagat ccagttgatt gtccaccagc ggcatcgtca ccggatgcgt cactccgtgg
    31141 catgaggctg cgagcgcctc cagagcacaa gccgcttcac cttcataact taacgtggct
    31201 ggcgcacagc ccagtgccgc cgccactgca tcgaacaacc gcccacacga tgacgccagc
    31261 ggcgcgttaa ttccacgctc aatggcccgc gccagcacgc tccagttttg ctgttgcaca
    31321 cttgctgttt cagggtaatt ctgccactcc ggcacaaagc gcaggcactg cgccagcagg
    31381 tttcgccacg gctgcttcgc tgccaaatcg ccacccggaa gcgccactgc aggcaagccg
    31441 cccaggtgct cacattcgcg atagttcacc cgcaggcact cgccgcccca caaagcgccg
    31501 ttctccccca taccgatacc gtcgagcgtc aaagcaatga catcaccgcc atccagcggc
    31561 cactgatgct ctgccagaca cgccgctgca tgggcatgat gatgcagtac cgtttgcgtc
    31621 ggcagattca tttcacgcgc ccactggctg gagacatagc ccggatgcgc gtcatgcaca
    31681 acgtatttcg gggtaaaatc gtagatgttt tgcatcaggc gtaacgcttc gcgccactgc
    31741 atctggatgc catcgtcact taaatcgccc agatgctgac tcaacaccgc ttgttcaccg
    31801 cgcaccaggc agaaggtatt tttcagatcc gctccgagac acagcacagg cggaacattt
    31861 ttaaagcccg gaggcaaagc cagcgcatcc ggcacatacc cccgcgaacg gcgcagcatt
    31921 tcgccgcttt cgcgcaccac cgaatcatcc atccgctgca cgatgtcgcg gttatgtatc
    31981 aagaatccgt cggcaatgcc ctgcaaatcc gccagcgcct gttcgttgct gatagctggt
    32041 ggtttaccgc tcaggttgcc ggaggtcatc accagcgggc attgcagttc ctgtaacagc
    32101 aaatgctgga gcgggttcgc aggcaacatt accccgactt cgttaaggtc aggggcgata
    32161 tcatcacaaa gctcaggaac gtatttttta tccaccagca caatcggcgc ggcgggcgtg
    32221 gtaagcaact ggcgcgcagc gtctggtaaa ccgtcagcca ctggcaacat gaccgccagc
    32281 ggtttcgccg ggcgatgttt gcgcgcccga agtgtcgcca ccgcgttact gttacgtgca
    32341 tcgcaggcaa gatgaaatcc gccaatccct ttgatggcga caatgttgcc catttttaac
    32401 tgtgcgatag ccgcctgtaa tgccgcctct tgttctgcat gttcaccatg acttacccat
    32461 tcaagatgcg ggccacactc cgggcaggcc accggctggg cgtggaagcg acgatcgagc
    32521 gggtcgcggt actctttgtc acaagccgga cacaacggaa acgccgccat cacggtaaac
    32581 gggcggtcgt aaggcatggc gcgaataatg gtgaaacgcg ggccgcagtg ggtacagttg
    32641 ataaacggat aacgataacg ccgttcgcct ggggtattca tttcggcaag gcaagcaggg
    32701 caagtagcgg catccgggac aatttgcgta ttcatggcac ctcccgcgct ctggcggatg
    32761 gtgaactcag tgggcagttg tgaccagatg tacggctcac gctcgacgct atcaatacgc
    32821 gccagcggcg ggcagtgctg atgcaattga acaagaaacg tttccgggtc ttcccgcagc
    32881 cggacttcta cgccatcgcc gtcattacag acatcgccgt gaagatttaa ttgctgtgcc
    32941 agctgccaga caaacggacg aaaaccgacg ccctgcactt tgccacgaat acgcagttgg
    33001 acaccgcaag atgtgttttt tgccattgag ttattcccgc catcatgaat tgcgtaaccc
    33061 gcccagccgg acacgacagc gtcgcatccg gcagtcacag gtcggcgata ccgcctgctc
    33121 cgtattctac gaatatttcc gggaattcct ttgatgccag aacagttctg taagattttt
    33181 agaacatcag cgccgtacgg cggcgttttt ctgcactcag ttgttcaagt ttattacgat
    33241 cgacacaaat cagcgcatga gtcgggcaag ccgccataca cgccgggccg tcttcacgat
    33301 ggttgcacag gtcacattta ttggcttcgg ctttgtcagc ccgtacattc agccccgcgc
    33361 cgctgttgcg aatcaccgga cgtaccacca cttccatcgc gccatacggg caagccacaa
    33421 cgcaggtttt gcaaccaatg caacgttcct gcatcacatg aacaaaccct ttatcacggc
    33481 tgatagcacc attcgggcag acgttagcgc acggtgcatc ttcacactga cggcaaactg
    33541 tcgccgtgga aatgttcaca cctttaatga catggatacg cggtaaaaat gtttccgggg
    33601 tcagcgatgc acagtcctga ttttcctgat gagaaaccac gcacgccact tcacaggtac
    33661 ggcaaccaat acatttactc gcgtcagcaa tgatgaaacg gttcatcaaa ttctccagca
    33721 atgacagtta atgcgccgat acattcacaa atcatgccag tttttaattc actgttattt
    33781 aaggaaatta atttctgtaa tgcaggaaaa aagatgtcat cgacactagt gacgatgaca
    33841 tgtgatgaca atgtttatcg cgaaagagca atgagtgagt cgcggtggat cagttttccg
    33901 ctgaaggttt tcggcggtga gaaatccccg ccatcgagca taaaaatcag ccgtccaata
    33961 atttcctgaa tcatctcagt caccggaatt tttacgctgg agagcgccgg aacgatatag
    34021 ggggcaattg cgatatcatc gaatccgata actgacacct gctctggcac cgctacgccg
    34081 cgctcgtgca acgctttcat cgcacctatc gccatatcgt cgttactggc aactaacgcg
    34141 ctaaatttag ccccacgttc gagcaacgtt tctacccctt cggccccgct ggcgggcgtc
    34201 catttaccgt tagcgataag tttttcattg agcgcaatac catgctgcgc cagcgcgtct
    34261 ttatacccag caagacgttc aatgctggtg ggggaatcca tcgagccggt aaggaaagca
    34321 atctcctgat gtccggcgtt tatcaactct gccacggcat taaagctggt ctgtttatga
    34381 tcgcaccaga cgctatggct gctgtttttg cgcaggcggc gattaagcac cattatcggc
    34441 tgactgtgcg cgtcaatgat gtcatcgatc tcatccacgc ttaaaaaacg cgggtaaatc
    34501 ataatggcgt tgcagcgcaa atccagcaga tactgaatcg cctggcgctc ttcttcggcg
    34561 ctgtgtttac catctgccaa tagcaactgc cgccctttct cttccgccat tcgcgcggca
    34621 tgaaagagta attcactaaa ataaatgccg tggtaaagcg tgttggtcac taccagcccc
    34681 agcgtctgag tactcttcgc cgacagattg cgcgccagca agtttgggcg gtaaccgctc
    34741 tcttctaccg cctgaaacac gcgatcttta gtctcctggc tgacgtagcc attacctgaa
    34801 agcacgcggg aaacggtcgc ttttgaaacc ccggcgcgct tcgccacttc cagcatcgtc
    34861 gtcatcattt tcatcccttt acacgcaatc aacgcagtgt actgcaccgt ttgccgattg
    34921 tccttgcgca atcggcggga aaaatattca ggtgaccggt ttcacaaata taaaaaatga
    34981 ataattaact ctcttgctta tttagtgaca actattcatg attttgtgaa accggtttcc
    35041 taattccgtt tcagcatcgg catttttccg ttacgtcgac tgataacaac tacatctacc
    35101 ctactgataa caggataaaa tccgatggcc aaaaattatg cggcgctggc acgctcggag
    35161 atagcggcac tgggcggcgt tgataacatc tcggcggtca cgcactgtat gacgcgtttg
    35221 cgctttgtta tcaaagatga ccagcttatc gacagcccga cgttaaaaac catccccggc
    35281 gtgctcggcg tggtacgtag tgacaaccag tgtcaggtga ttatcggcaa taccgtttca
    35341 caagcctttc aggaagtcgt cagcctgctg ccgggagata tgcagcccgc acagcccgtg
    35401 ggtaaaccca aactcacgcc gcgtcgcatt ggtgtgggga tcctcgatgc gctgatcggc
    35461 accatgtcac cgctgatccc ggcgattatc ggcggatcga tggtcaaact gctggcgatg
    35521 atcctcgaga tgagcggcgt gctgacaaaa ggatcgccga ccttaaccat tctgaatgtg
    35581 attggtgacg gtgctttctt cttcctgccg ctgatggtcg cggcatctgc cgacatcaaa
    35641 tttaaaacca atatgtcgct ggcgattgcc atcgcgggtg tgctggtaca tccgagtttt
    35701 attgaactga tggcgaaagc ggcccagggt gaacatgtcg aatttgccct gattccggtc
    35761 accgcggtga aatacaccta cacagtgatc ccggcgctgg tgatgacctg gtgcctgtca
    35821 tatatcgaac gctgggtgga tcgcattaca ccggcggtga ccaaaaactt cctcaagcca
    35881 atgctgattg tgttgattgc cgcaccgctg gcaatcctgc tgattggccc gattggtatc
    35941 tggatcggta gcgccatttc ggcgctggtt tacagcattc atggttatct gggctggctt
    36001 tcagtcgcca ttatgggcgc gctgtggcct ctgctggtaa tgaccgggat gcaccgcgtc
    36061 tttacgccaa ccatcattca gaccattgcc gaaaccggca aagaagggat ggtcatgccg
    36121 tcagagatcg gcgctaacct gtcgctgggc ggttcatcac tggcggtggc gtggaaaacg
    36181 aaaaacccgg aactgcgcca gacggcgctg gctgcggcgg catcagccat tatggcgggg
    36241 atttccgaac cggcgttata cggcgtggcg atccgcctga aacgtccgct tatcgccagt
    36301 cttatcagcg gttttatttg cggcgcggtt gccggtatgg cggggcttgc cagccactca
    36361 atggcagcgc cggggctatt taccagcgtg caattcttcg atccggcgaa tccaatgagc
    36421 atcgtctggg tgttcgcggt catggcgctg gcggtggtgc tgtcgtttat cctcacactg
    36481 ttgctcggct ttgaggatat tcctgttgag gaagcggctg cccaggcgcg aaagcatcag
    36541 agcgtacaac cgaccgtcgc caaagaagta agtcttaatt gaggatgaaa atgtcagtat
    36601 ttccagaagg ttttttatgg ggcggcgcgc ttgccgccaa ccagtctgaa ggtgcgttcc
    36661 gtgaaggcgg aaaagggctg accaccgtcg atatgatccc acacggcgag catcgaatgg
    36721 cggtgaaact ggggctggaa aaacgttttc agttgcgcga tgacgagttt tatcccagcc
    36781 atgaggcgac ggatttttat catcgttata aagaagatat cgccctgatg gcagagatgg
    36841 gattcaaggt tttccgtacc tcaattgcct ggagccgtct ctttccgcag ggcgatgaaa
    36901 tcacgcccaa tcagcagggc attgcttttt atcgttctgt ctttgaagag tgtaaaaagt
    36961 acggtatcga accgctggtc acgttgtgcc acttcgatgt gccgatgcat ctggtcaccg
    37021 aatatggctc ctggcgtaac cgcaagctgg tggagttttt cagccgctac gccagaacct
    37081 gctttgaagc atttgatggt ctggtgaaat actggctaac cttcaatgaa atcaacatta
    37141 tgttgcatag cccgttctcc ggcgcgggtc tggtgtttga agaaggtgaa aatcaggatc
    37201 aggtgaaata tcaggccgcg catcaccagc tggttgccag tgcgctagcc gccaaaatcg
    37261 cccatgaggt taacccgcaa aatcaggtgg gctgtatgct ggcgggcggc aacttctacc
    37321 cttacagctg caaaccggaa gatgtctggg cggcgctgga gaaagatcgg gaaaacctgt
    37381 tttttatcga tgtgcaggcg cgcggcgcgt atccggctta ctctgcccgc gtatttcgcg
    37441 aaaaaggggt aaccatagat aaagcgctgg gcgatgatga gatcctgaaa aacaccgtcg
    37501 attttgtctc tttcagctat tacgcctcgc gctgcgcctc ggcggagatg aacgccaaca
    37561 acagcagtgc ggcgaacgtg gtgaaatcgc tgcgtaaccc gtatctgcaa gtgagcgact
    37621 ggggctgggg aattgatcca ctcggtctgc gtatcaccat gaatatgatg tacgatcgtt
    37681 atcagaagcc gctgtttctg gtggaaaacg gcctcggcgc aaaagatgaa cttgctgcca
    37741 atggcgagat taacgatgac tatcgcatca gctatttacg cgaacatatc cgcgcaatgg
    37801 gcgaagcgat tgcagatggc attccgctga tgggctacac cacatggggc tgtattgatt
    37861 tagtttccgc ctctacgggt gaaatgagca aacgctacgg ttttgtctac gtagaccgtg
    37921 acgacgcagg caacggcacg ctgacgcgca cacgtaagaa atcgttctgg tggtataaaa
    37981 aagtgattgc cagtaatggg gaagatttag agtaagtaac agtgccggat gcggcgtgaa
    38041 cgccttatcc ggcctacatg tcgcacgaac caggaaggcc cgataagcgc agcgcatcgg
    38101 gcaatttagc atttggcatc agagctggtt caccccatca agaacatccc tgtcctgatt
    38161 ccttaatgaa aaactactct tcttccaccg ctaactgcgc gaagccgcca ttcccttccc
    38221 agccttccag tcgttgataa acggtttcta ccgcatcttt aatcggctgg gtcatcgggt
    38281 agtaaaagcc gacgatatcc ggctgtatgc cgaggaaaat cacttcgcca atatcttctt
    38341 tcaactggtc gataagatag ttcagaggca tgttatgggt agtcatcata aacatctcgg
    38401 cgatatcatc cgggtcgatg atgcggatct cgccggggtt tagccccata tccgtggcgt
    38461 cgacaatcag taaccgcgta gggcgcagtt cacggatggc gacgatgtcg ttttccggtg
    38521 cactaccgcc gtcaatcacc acccagttac ctttcggcgc ggcggcgcac ttttccgcca
    38581 gcagcggacc tgcgccatca tcgcccatca tgctattgcc aacacagagt aaaacgtcag
    38641 tcacgcaatc tcctcaccat caaatagatg gcgttttcct gatgaatatc atgcagcata
    38701 cttaacagca ttgtactcca ttcctgctgc tgcgaagttt gcgctgcccg ggctttatcg
    38761 aatgcgttgg ccagcatcgg cacatggtta atgtcgatga cgatctcacc gtacttcggt
    38821 acgccttcca ttttgcggcg ggcttcactg cccgcctcca gagtggcaat ccatgccaga
    38881 tattcatccc acgggcaggt gagcgccgct tccaggcaat cgataacccc aaggtggtga
    38941 ccaatcgcca ggctgtaata gaccacctgc tgcgcctcgg cgggcgtggc atcgttctca
    39001 tcaataaatt tacggctcag ttgactgaac accacctttt cactcatcgg atacgcacct
    39061 cttctacaac atgattcaga tggctgacaa tctcgttcag acgcggatcg ttttccgctt
    39121 ccagccagcg tgcaacctgt tcttcgccct gccctaactg tgtcaggaag tcatcggcaa
    39181 tctgacgacc gtaacgataa cccgccaggc ggcgtgcttc gcgatccact ttcacgcgca
    39241 gcggctgcac catatcgcca tgcaggatct ccgccggttg ttcatccagt tcacccggcc
    39301 cacgggcgtg aattttctgc tccagcaggc cgagcgccat tgcaaagccg tacagcgtgg
    39361 cggcaggcgt tggcgggcag ccagggatat aaacatccac agggacaatt ttatccgtac
    39421 cgccccacac gcagtagaga tcgtggaaga tcccgccgct gttaccgcag gcaccgtagg
    39481 agatacaaat tttcgggtcc ggcgcggact gccacgcacg cagcgcaggg gatcgcattg
    39541 cacgggtgac cgcgccggta aacagtaaaa tatccgcatg acgcggtgaa ggaacgactt
    39601 taatgccgaa gcgttctgca tcaaacagcg gcgataaagt ggcgaaaatt tcgatttcgc
    39661 agccgttgca gccgccgcag tccacgcggt aaacataggc agaacgtttg atttttttca
    39721 gtaacgacgc cttcatgctg gcgatggatt catccaccgt catcgggacc ggaatgccgt
    39781 tggcgtcacg ggggcctaat aaattgctca tcagatggcc tctttcatat ggcgagtcag
    39841 ttcaatacgg tcggacggca ccaggcattt ctggcgctta cattccgggc aagtctcaaa
    39901 gctttcgcgg tggttttccg cgcggctgtc gccgttgtgc ttaagcagcg caatggcgta
    39961 gtcgatctct ttctggacgg cgaaaggacg attgcagacg cgacagttgc acagcgcgaa
    40021 gcgagactgt tgcaggaagt cttctttctt ccacaccgcc agttcgtact cttgcgacag
    40081 cttaatcgcc gccgtcgggc aaacttcttc gcagcgtcca cagaagatgc agcgcccgag
    40141 attaaactcc caggccagct ctcctgtggc gaggtcagtt tcaaccgtta aggcgtttga
    40201 cgggcaggca ttgacgcagg ccgcgcagcc gatgcactgc tgcgggttct gctctggctt
    40261 accacggaag tttttatcaa ccgcaatcgg ctccagcgga taagacgagg tcgccgtacc
    40321 ggttttgata acttttttga taaaggtaaa catggcgatt ccttatttca gcggcgagtt
    40381 tttacgctca atgctgtagc gctcgagttc tttgtacggc accactttgc tcttcttctt
    40441 acgtacatcg accacagtca tgcggtcggt acaggagtag caagggtcca ggctaccgat
    40501 aatcagcggc gcatcggaaa cagtgttgcc acgcagcatg tagcgcaggg tcggccagtt
    40561 cgcgtaggtc gcggcacggc agcgccagcg gtacagcttc tggttgtcgc cagtcatgct
    40621 ccagtggata tcatcaccgc gcggcgcttc ggcaaagccc agcgcgaaac ggtgcggaat
    40681 gtaggtaaag ccttccacca tcagcgggcc acccggcagg ttatccagac cgtagtcgat
    40741 catgttcagc gcggtataga cttcgttgat acgcactttc agacgcgaaa taacgtcgca
    40801 gccctgctcg ctgtggactt ccattggcag caggccataa ccaacaaacg ggtgatcagc
    40861 gcgggtatcg cgagcgtgtc cgctggcgcg gaccatcggg ccaacgttac tgaaatcgcg
    40921 ggcaatttcc gggtccagac gaccaatgcc gacggtgcgc tgttccatgt tcggtgtgct
    40981 cagcagcaca tccaccagct cctgcacttc acgacgcatc tgttgcgcca gctggcgggt
    41041 ctggatcatg tcatctttca acagatcgcg acgaatcccg ccgatcaggt tcaggccgta
    41101 ggttttacgc gcaccggtga ggatctcggc cattttcatg gaggtttcac gcacgcggaa
    41161 gaattgcata aagccggagt cgaagccggt aaagtggcag gcgaggccga ggttgagcag
    41221 atgcgagtgc aggcgttcca cctccagcag aatggcgcgg atcatctgcg cacgttctgg
    41281 cacctgaata cccatcgcgt tttccaccga cgtggtgtag gcggtgctgt gggcgaagcc
    41341 gcagatcccg cacacacggt cagagaggaa ggtcacttcg ttataaccca tgcgggtttc
    41401 cgccagtttt tccataccgc gatggacata gaacaagcgg tagtctgcgt cgataatgtt
    41461 ttcgccatcg acgaacagac ggaagtggcc cggttcgtca gaagtgacgt gcagcggacc
    41521 aatcggcacg acgttgtttt tcttgtcgcc cagttcgttg atgaactcgt aggtttcagc
    41581 atcggtggtc ggtgccggac gctgacgata atccatgctg tctttacgca gcggataaag
    41641 ttcatccggc cagtcatccg gcagcaccag acggcgttca tccggcagac caaccggaat
    41701 caaaccgtac atatcgcgca cttcgcgctc gccccacacc gccgccggaa cgcgcggcgt
    41761 cacggacgga tactccggtt tgttggcatc aacttcgacg cgaaccgtta cccagcactt
    41821 agtccccttc tccatcgaca gcacgtaata aacggcgtaa tgaccattca gtttgcgttc
    41881 gtcgttacca aaaagcaccg acagccagcc cccctgcttg tagtagagaa actccaccac
    41941 ttccggcaga tagttcacct ttacggtgac agtcagctga tctttggtct gccaggcgtg
    42001 gtccagcacg acgcccggaa atgcctcatt cagcgcggcg agataatgtt gacctaattt
    42061 ttcttcagac atgctcaaac tctctttaat cacgccgcca gcaaggagac gaacgctaaa
    42121 aatgcaaagc caaacccagc ccaggtaatg cgcggagtaa tatcaagacg cagacgggcc
    42181 atgctgtttt cgaacagcgc gataaccagg acgccgacca ccagttttac gatcgcaatc
    42241 accagcgcca gcagcagtcc accggcggtg aaggtttcca tttgtcccca cggaataaac
    42301 accccgacga acatctgcaa caccaccagc tgtttcaggc tgatacccca tttcatgacg
    42361 ccaaagccgc tgccgctata ctcagagagc ggaccttcct gcaactcctg ctcggcttcc
    42421 gccaggtcga acggcagttt gcccatttcg ataaaagtgg cgaacgcaca ggcgcagagc
    42481 gccagcacca gcgggatgct ttggctcagc ggccagtgat aaacggtgtc ggtaatgttg
    42541 ctgatgttgg tggaaccggc aacctgtgcg gcaacccaca gaccaagcag caacatcggt
    42601 tcgaccagca cgccaagcat cgcttcacgg ctcgcaccga tagcggtaaa cgggctaccg
    42661 gtatccagac cggaaatggc aaagaagaaa cgcgcgatgg cgaagagata cagtaaggtg
    42721 atcaaatcgc ccagttgcgg cagcggagaa ccgacggtca ccaccggcag cgcagtagcg
    42781 atagtcagca tgacgcccac catcacatac ggcgtcaggc ggaacaccca gccagaggca
    42841 tccgggccaa cgctctggcg gcccagcagt ttgataatgt cgcgatactc ctgcaacacg
    42901 cccggcccgc gacggttatg cagacgggcg cgcgccacgc gggtaatacc ggagagcagc
    42961 ggcgcaacgg caaataacac cagcgcctga attaacggat ataaaacact cattctcagg
    43021 ctcctcgtga aacaataatc accaccagta ccgccagttc aaccagcgcc atccggcgga
    43081 acagcaacgc actaccttcg cactgccagc ccggcaccag cgacaccgga ttcagccatt
    43141 tgcgcagttt cagcactggc gcaaacgcct gtttaaccgg catggcaaaa ccgtgagcgg
    43201 taatcaccat tgatttttca tggtcgtagc cgcacaccca ggccgcaccg cgggaacgtg
    43261 acggcaggcg gtcgcctttg caaatcgcca taatgatgaa tggcagcagc gggcaggcaa
    43321 tcagcagcaa tgtgatcatt ggttgagaaa cggtggtgtt agcaggctcc agaggcagag
    43381 gtacggcagc agagagcatc ggcagcagcc acggcgcagc aacaccgcca attacgcagc
    43441 aaatcgccag tgccactacg cttacgctca tcaggagcgg cgcacaggtg gcgttttcgg
    43501 cttctttggt acgcggcgcg ccgaggaacg tgacgccata gactttcgcc atacacatca
    43561 ccgccagcgc accggtaatt gccagaccca cagcgagcag cggccccagc agacgggcaa
    43621 caaacgcgcc actattgctc agtttgaaaa aggattgata gataacccat tccccggcaa
    43681 acccgttcag cggcggcagc gcagccattg ccatcaaccc gactaacatg gcgatggaga
    43741 taaccggcat tttcttgcca ataccaccga gtttttcgat atcgcgatga ccggtacgga
    43801 accagacgct ccccgccccg aggaacagta cgcttttgaa caggctatgg ttaagcagat
    43861 ggtacagacc accgaccagg ccaagagcaa tcagcgccgg ttgttcgagc gcgatacccg
    43921 ttacgccagc gcccagcccc agcaggataa tgccgatatt ttccagggtg tggtaagcca
    43981 gcaggcgctg gatgttgtgc tccatcagcg catacagacc accgacaaac gcggtgatca
    44041 tgccgagcac cagcagcacg atcccccacc acagcggtgc attaccgccc agcagtgaca
    44101 gggttaaaat gcccagcagg ccaattttca tgactaccgt agaaaacaac gcggcagctg
    44161 gcgcagaggc gttagcatgt gcctgcggca cccagccgtg cagcggaata atcccggcga
    44221 gcaggccaaa gccaatcaca ccgagcagcc agatatcgga accgagcggc agctgttgca
    44281 tacgcatatc cagcaggcgc agatccagcg tgccataacg ctgccacagc agccagcaag
    44341 caatcgccag cagcagagtg ccaagacgcc ccagcgcaaa ccacagtttg ccctcttttg
    44401 tttcgacgta atactcgatg gtgtggctgt taaagccatc cgccagggtg acgtaaatac
    44461 gaaaatgttc aaaaaggacg aaacagagtt ctttgtccgg cgcgcagctc atggcgtgat
    44521 gcaggcgcgc tttcgataac gtgatcccct gaaccagcga attgcagtag atgtgccact
    44581 ggtcctgtag gcgacgatgc cgctgtgcga tgtaatcggc tttctcgctt atttcccaaa
    44641 tagtcattgt caggttaccc gtttaacaga gatgccagct ttaagcattt tctgtgccaa
    44701 tttttaattt attgttatta aaacgatttt taagctaaag atgaatttcg tcgccgtgtc
    44761 gacgtgtcat ttcgacatca tcgacattat tcaccgcagg gataatcaac actggcacaa
    44821 ttattgcttg tagctggcaa tagttaatgg gaggcgatat gcacgaaata accctctgcc
    44881 aacgggcact ggaattgatc gaacagcagg ccgcaaaaca cggcgcaaaa cgcgtaactg
    44941 gggtctggct caaaattggc gcattttctt gtgtcgaaac cagctctctt gccttttgtt
    45001 ttgatctggt ttgccgcggc agcgtggcgg aaggttgtaa actgcacctc gaagaacaag
    45061 aggtcgaatg ctggtgtgaa acatgccaac agtatgtgac gctattgacc cagcgcgtcc
    45121 gccgctgtcc acagtgtcat ggtgacatgc tacagattgt ggcagacgac ggtttacaga
    45181 ttcggcggat agaaatagac caggagtgag cgatgtgtac aacatgcggt tgcggtgaag
    45241 gcaacctgta tatcgagggt gatgaacata accctcattc cgcgtttcgt agcgcgccat
    45301 ttgccccggc ggcacgcccg aagatgaaaa tcaccggcat taaagcgcct gaatttaccc
    45361 ccagccagac tgaagaaggc gacctgcatt acggtcatgg cgaagcgggc actcacgcac
    45421 cgggcatgag ccagcgtcgg atgctggaag tcgaaattga cgtgctggac aaaaacaacc
    45481 gtctggctga acgcaaccgc gcgcgctttg ctgcccgcaa gcaactggtg ctcaacctgg
    45541 tttccagccc aggttccggt aaaaccaccc tgctgacgga aaccctaatg cgcctgaaag
    45601 acagcgttcc gtgcgcggtt attgaaggtg accagcaaac cgtgaacgat gccgcacgca
    45661 ttcgcgctac cggcacacca gcgattcagg tgaacacagg taaaggctgc catcttgacg
    45721 cacagatgat tgccgacgcc gcaccgcgtc tgccactgga cgataacggt attctgttta
    45781 tcgaaaacgt tggcaacctc gtatgcccgg ccagcttcga tctcggtgaa aaacacaaag
    45841 tggcggtgct ttccgttacc gaaggtgaag acaaaccgct gaaatatccg catatgtttg
    45901 ccgccgcctc gctgatgctg ctcaacaaag ttgacctgtt gccgtatctc aactttgacg
    45961 ttgagaagtg catcgcctgc gcccgcgaag tcaatccaga aattgaaatc atccttattt
    46021 ccgccaccag cggtgaaggg atggaccagt ggctgaactg gctggagaca cagcgatgtg
    46081 cataggcgtt cccggccaga tccgcaccat tgacggcaac caggcaaaag tcgacgtctg
    46141 cggcattcag cgcgatgtcg atttaacgtt agtcggcagc tgcgatgaaa acggtcagcc
    46201 gcgcgtgggc cagtgggtac tggtacacgt tggctttgcc atgagcgtaa ttactgaagc
    46261 cgaagcacgc gacactctcg acgccttaca aaacatgttt gacgttgagc cggatgtcgg
    46321 cgcgctgttg tatggcgagg aaaaataatg cgttttgttg atgaatatcg cgcgccggaa
    46381 caggtgatgc agttaattga gcatctgcgc gaacgtgctt cacatctctc ttacaccgcc
    46441 gaacgccctc tgcggattat ggaagtgtgc ggtggtcata cccacgctat ttttaaattc
    46501 ggcctcgacc agttactgcc tgaaaacgtt gagtttatcc acggtccggg ttgccctgtg
    46561 tgcgtactgc cgatgggtag aatcgacacc tgcgtggaga ttgccagcca tccggaagtc
    46621 atcttctgta cctttggcga tgccatgcgc gtaccaggga aacagggatc gctgttgcag
    46681 gcaaaagcac gcggtgccga tgtgcgcatc gtttactcgc cgatggatgc gttgaaactg
    46741 gcgcaggaga atccaacccg caaagtggtg ttcttcggct taggttttga aaccaccatg
    46801 ccgaccaccg ccatcactct gcaacaggcg aaagcgcgtg atgtgcagaa tttttacttc
    46861 ttctgccagc acattacgct tatcccgacg ctgcgcagtt tgctggaaca gccggataac
    46921 ggtatcgacg cgttcctcgc gccgggccac gttagtatgg ttatcggcac tgatgcctat
    46981 aattttatcg ccagcgattt tcatcgtccg ctggtggtcg ctggtttcga accccttgat
    47041 ctactgcaag gcgtggtgat gctggtggag cagaaaatag cggcccacag caaggtagag
    47101 aatcagtatc gtcgggtggt accggatgcc ggtaacctgc tggcgcaaca ggcgattgcc
    47161 gatgtgttct gtgtcaacgg cgacagcgaa tggcgcggct taggcgtgat tgaatcttct
    47221 ggcgtgcacc tgacgccgga ttatcaacga ttcgatgccg aagcacattt ccgcccggca
    47281 ccgcagcagg tctgcgatga cccgcgcgcg cgttgtggtg aggtattaac gggcaaatgt
    47341 aagccgcatc aatgcccgct gtttggtaac acctgtaatc ctcaaaccgc atttggtgca
    47401 ctgatggtct cctccgaagg agcgtgcgcc gcgtggtatc agtatcgtca gcaggagagt
    47461 gaagcgtgaa taatatccaa ctcgcccacg gcagcggtgg ccaggcgatg cagcaattaa
    47521 tcaacagcct gtttatggaa gcctttgcca acccgtggct ggcagagcag gaagaccagg
    47581 cacgtcttga tctggcgcag ctggtagcag aaggcgatcg tctggcgttc tccaccgaca
    47641 gttacgtcat tgacccgctg ttctttcctg gcggtaatat cggcaagctg gcgatttgcg
    47701 gcaccgcgaa tgacgttgcg gtcagtggcg ctattccgtg ctatctctcc tgtggcttta
    47761 tcctcgaaga aggattgccg atggagacac tgaaagccgt agtgaccagc atggcagaaa
    47821 ccgcccgcac ggcaggcatt gccatcgtta ctggcgatac taaagtggtg cagcgcggcg
    47881 cggcagataa actgtttatc aacaccgctg gcatgggcgc aattccggcg aatattcact
    47941 ggggcgcaca gacgctaacc gcaggcgatg tattgctggt tagcggtaca ctcggcgacc
    48001 acggggcgac tatccttaac ctgcgtgaac aactggggct ggatggtgaa ctggtcagcg
    48061 actgcgcggt gctgacgccg cttattcaga cgctgcgtga cattcccggc gtgaaagcgc
    48121 tgcgtgatgc cacccgtggt ggtgtaaacg cggtggttca tgagttcgcg gcagcctgcg
    48181 gttgtggtat tgaaatttct gaatcagcac tgccggttaa acctgctgtg cgcggcgttt
    48241 gcgaactgct gggactggac gcccttaact ttgccaacga aggcaaacta gtaatagctg
    48301 ttgaacgcaa cgcagcagag caagtgctgg cagcgttaca ttcccatcca ctggggaaag
    48361 acgcggcgct aattggtgaa gtggtggaac gtaaaggtgt tcgtcttgcc ggtctgtatg
    48421 gtgtgaaacg aaccctcgat ttaccacacg ccgaaccgct tccgcgtata tgctaataaa
    48481 attctaaatc tcctatagtt agtcaatgac cttttgcacc gctttgcggt gctttcctgg
    48541 aagaacaaaa tgtcatatac accgatgagt gatctcggac agcaagggtt gttcgacatc
    48601 actcggacac tattgcagca gcccgatctg gcctcgctgt gtgaggctct ttcgcaactg
    48661 gtaaagcgtt ctgcgctcgc cgacaacgcg gctattgtgt tgtggcaagc gcagactcaa
    48721 cgtgcgtctt attacgcatc gcgtgaaaaa gacaccccca ttaaatatga agacgaaact
    48781 gttctggcac acggtccggt acgccgcatt ttgtcgcgcc ctgatacgct gcattgcagt
    48841 tacgaagaat tttgtgaaac ctggccgcag ctggtcgctg gtgggctata ccccaaattt
    48901 ggtcactatt gcctgatgcc actggcggcg gaagggcata tttttggtgg ctgtgaattt
    48961 attcgttatg acgatcgtcc ctggagcgaa aaagagttca atcgtctgca aacatttacg
    49021 cagatcgttt ctgtcgtcac cgaacaaatc cagagccgcg tcgtcaacaa tgtcgactat
    49081 gagttgttat gccgggagcg cgataacttc cgcatcctgg ttgccattac caacgcggtg
    49141 ctttcccgcc tggatatgga cgaactggtc agcgaagtcg ccaaagaaat ccattactat
    49201 ttcgacattg acgatatcag tatcgtctta cgcagccacc gtaaaaacaa actcaacatc
    49261 tactccactc actatcttga taaacaacat cccgcccacg aacagagcga agtcgatgaa
    49321 gccggaaccc tcaccgaacg cgtgttcaaa agtaaagaga tgctgctgat caatctccac
    49381 gagcgggacg atttagcccc ctatgaacgc atgttgttcg acacctgggg caaccagatt
    49441 caaaccttgt gcctgttacc gctgatgtct ggcgacacca tgctgggcgt gctgaaactg
    49501 gcgcaatgcg aagagaaagt gtttaccact accaatctga atttgctgcg ccagattgcc
    49561 gaacgtgtgg caatcgctgt cgataacgcc ctcgcctatc aggaaatcca tcgtctgaaa
    49621 gaacggctgg ttgatgaaaa cctcgccctg accgagcagc tcaacaatgt tgatagtgaa
    49681 tttggcgaga ttattggccg cagcgaagcc atgtacagcg tgcttaaaca agttgaaatg
    49741 gtggcgcaaa gtgacagtac cgtgctgatc ctcggtgaaa ctggcacggg taaagagctg
    49801 attgcccgcg cgatccataa tctcagtggg cgtaataatc gccgcatggt caaaatgaac
    49861 tgcgcggcga tgcctgccgg attgctggaa agcgatctgt ttggtcatga gcgtggggct
    49921 tttaccggtg ccagcgccca gcgcattggt cgttttgaac tggcggataa aagctccctg
    49981 ttcctcgacg aagtgggcga tatgccactg gagttacagc cgaagttgct gcgtgtattg
    50041 caggaacagg agtttgaacg tctcggcagc aacaaaatca ttcagacgga cgtacgttta
    50101 attgccgcga ctaaccgcga tctgaaaaaa atggtcgccg accgagagtt ccgtagcgat
    50161 ctctattacc gcctgaacgt attcccgatt cacctgccgc cactacgcga gcgtccggaa
    50221 gatattccgc tgctggcgaa agcctttacc ttcaaaattg cccgtcgtct ggggcgcaat
    50281 atcgacagca ttccagccga gacgctgcgc accttgagca acatggagtg gccgggtaac
    50341 gtacgcgaac tggaaaacgt cattgagcgc gcagtattgc taacacgcgg caacgtgctg
    50401 cagctgtcat tgccagatat tgctttaccg gagcctgaaa cgccgcctgc cgcaacggtt
    50461 gtcgctcagg agggcgaaga tgaatatcag ttgattgttc gcgtgctgaa agaaaccaac
    50521 ggcgtggttg ccgggcctaa aggcgctgcg caacgtctgg ggctgaaacg cacgaccctg
    50581 ctgtcacgga tgaagcggct gggaattgat aaatcggcat tgatttaact gcaaattgcc
    50641 ggacagatct gcctgtccgg catactattc acgaggtttt ttcggacgat atttttccgg
    50701 cagttctggc accggacgct tgtcatcgat gagatgacgc acggttaaga tcggatgacg
    50761 ccacagcatt ctcggcccgg cccaacgcat aatctgtttc atctcttcac gctttgcagg
    50821 ctggtaacag tgcaccggac actgcttaca ggctggtttc tcttcgccga acacacattt
    50881 atccagccgc ttttgcgcgt aaacaaacaa cgcctcgtaa tgctccggct ccgctgacgc
    50941 ctgcgggcat ttcgcttgat aaagatcgat cattttttta atcgtcagtt tttcacgaga
    51001 gatacgcttg ccggacatgc tgcctccata ctcttaaggt gtatttatat tacaacttaa
    51061 tttgaaaggg gactatggct ctgaaggagg aggtttattc aaccgacgca attttgcgta
    51121 cttgcttcat aagcatcacg caaaagctgc aaaacagcat ctttcccgga accagcatca
    51181 agaactcgcc gttcgcttct tcccctgaaa tgattaactc cggtatcatg tgcgccttat
    51241 gtgattacaa cgaaaataaa aaccatcaca ccccatttaa tatcagggaa ccggacataa
    51301 ccccatgagt gcaatagaaa atttcgacgc ccatacgccc atgatgcagc agtatctcag
    51361 gctgaaagcc cagcatcccg agatcctgct gttttaccgg atgggtgatt tttatgaact
    51421 gttttatgac gacgcaaaac gcgcgtcgca actgctggat atttcactga ccaaacgcgg
    51481 tgcttcggcg ggagagccga tcccgatggc ggggattccc taccatgcgg tggaaaacta
    51541 tctcgccaaa ctggtgaatc agggagagtc cgttgccatc tgcgaacaaa ttggcgatcc
    51601 ggcgaccagc aaaggtccgg ttgagcgcaa agttgtgcgt atcgttacgc caggcaccat
    51661 cagcgatgaa gccctgttac aggagcgtca ggacaacctg ctggcggcta tctggcagga
    51721 cagcaaaggt ttcggctacg cgacgctgga tatcagctcc gggcgttttc gcctgagcga
    51781 accggccgac cgcgaaacga tggcggcaga gctgcaacgc actaatccgg cggaactgct
    51841 gtatgcagaa gatttcgccg agatgtcgct gattgaaggc cgtcgcggcc tgcgccgtcg
    51901 cccgctgtgg gagtttgaaa tcgacaccgc gcgccagcag ttgaatctgc aatttggcac
    51961 ccgcgatctg gtcggttttg gcgtcgagaa cgcgccgcgc ggactttgtg ctgccggttg
    52021 tctgttgcag tatgcgaaag atacccaacg cacgaccctg ccgcatattc gttctatcac
    52081 catggaacgt gagcaggaca gcatcattat ggatgccgcg acacgtcgta acctggaaat
    52141 tactcagaac ctggcgggcg gtgcggaaaa tacgctggct tctgtgctcg actgcaccgt
    52201 cacgccgatg ggtagtcgta tgctgaaacg ctggctgcat atgccagtgc gcgatacccg
    52261 cgtgttgctt gagcgccagc aaactattgg cgcattgcag gatttcaccg ccgggctaca
    52321 gccggtactg cgtcaggtcg gcgaccttga acgtattctg gcacgtctgg ctttacgaac
    52381 tgctcgccca cgcgatctgg cccgtatgcg ccacgctttc cagcaactgc cggagctgcg
    52441 tgcacagtta gaaactgtcg atagtgcacc ggtacaggcg ctacgtgaga agatgggcga
    52501 gtttgccgag ctgcgcgatc tgctggagcg agcaatcatc gacacaccgc cggtgctggt
    52561 acgcgacggt ggtgttatcg catcgggcta taacgaagag ctggatgagt ggcgcgcgct
    52621 ggctgacggc gcgaccgatt atctggagcg tctggaagtc cgcgagcgtg aacgtaccgg
    52681 cctggacacg ctgaaagttg gctttaatgc ggtgcacggc tactacattc aaatcagccg
    52741 tgggcaaagc catctggcac ccatcaacta catgcgtcgc cagacgctga aaaacgccga
    52801 gcgctacatc attccagagc taaaagagta cgaagataaa gttctcacct caaaaggcaa
    52861 agcactggca ctggaaaaac agctttatga agagctgttc gacctgctgt tgccgcatct
    52921 ggaagcgttg caacagagcg cgagcgcgct ggcggaactc gacgtgctgg ttaacctggc
    52981 ggaacgggcc tataccctga actacacctg cccgaccttc attgataaac cgggcattcg
    53041 cattaccgaa ggtcgccatc cggtagttga acaagtactg aatgagccat ttatcgctaa
    53101 cccgctgaat ctgtcgccgc agcgccgtat gttgattatt accggcccga acatgggcgg
    53161 taaaagtacc tatatgcgcc agaccgcact gattgcgctg atggcctaca ttggcagcta
    53221 tgtaccggca caaaaagtcg agattggacc tatcgatcgc atctttaccc gcgtaggcgc
    53281 ggcagatgac ctggcttccg ggcgctcaac ctttatggtg gagatgactg aaaccgccaa
    53341 tattttacat aacgccaccg aatacagtct ggtgttaatg gatgagatcg ggcgtggaac
    53401 gtccacctac gatggtctgt cgctggcgtg ggcgtgcgca gaaaatctgg cgaataagat
    53461 taaggcattg acgctgtttg ccacccacta tttcgagctg acccagctac cggagaaaat
    53521 ggaagacgtc gccaacgtgc atctcgatgc gctggagcac ggagacacca ttgcctttat
    53581 gcatagcgtg caggatggcg cggcgagcaa aagctacggc ctggcggttg cagctctggc
    53641 aggcgtgcca aaagaggtga ttaagcgcgc acggcaaaaa ctgcgtgagc tggaaagcat
    53701 ttcgccgaac gccgccgcta cgcaagtgga tggtacgcaa atgtctttgc tgtcagtacc
    53761 ggaagaaacc tcgccagcgg tcgaagctct ggaaaacctg gacccggatt cactgactcc
    53821 gcgtcaggcg ctggaatgga tttatcgctt gaagagcctg gtgtaataac aattcccgat
    53881 agtcttttgc tatcgggaat attaacgaca actgacgaat aaaataaaaa ccccctgtat
    53941 aataggaaag cttattttac agggtaaaac catgccatct acacgctatc aaaaaattaa
    54001 tgcccatcac tatcgccata tatgggtcgt tggtgatata catggtgaat atcaattatt
    54061 acaatcccgc ttacatcaac tctctttttg ccctgaaacc gacttactta tttctgtcgg
    54121 cgataatatt gatcgtgggc cggagagtct tgacgtcctg cgcctgctaa accagccctg
    54181 gtttatctcc gttaaaggca accacgaagc aatggagctg gatgcgttcg cgaccggcga
    54241 tggcaatatg tggcttgcca gcggtggtga ctggtttttc gatttaaatg attcagagca
    54301 acaagaggca atagatctgt tgctgaaatt ccatcacctt ccacatatta ttgaaatcac
    54361 taacgacata ataaaatatg tcatcgcaca tgcagattat ccgggtgatg aatatctctt
    54421 tggcaaagaa atagcggaga gcgaattact ctggcctgtt tatcgtgtgc agaaatcgct
    54481 taatggcgag ttacaacaaa taaacggcgc tgattatttt atatttggac atatgatgtt
    54541 tgataacatt cagacgttcg ctaaccagat ttatattgat accggatcgc cgaaaagtgg
    54601 gcggctgtca ttttataaaa taaggtagtc tcatgcttct tctgtgaagc atgagtaacc
    54661 agatgttatt gcaggccatt attcattttt cgctaccagc aaagagagat cctgcttcgc
    54721 cagcgcgcga ctggcactct ccggcaaacc gtcgtctgta ataatctgat caaactcgct
    54781 taatggtaac gccagccatg tcgccacctg accatatttc gtcgcatcac agaccaaaac
    54841 tcgctggcgg ctggcactag caatcgcccg tttcaccgtg actttatctt ccgctggcgt
    54901 agaaatcccc cgcacactcc atgacgatgc agaaataaaa gcctgatcaa tcatcaggct
    54961 gcgcagcatg gtcgcagcgg cttccccgac acaggaacgg ttttcccgac acactgcacc
    55021 gccagtgtga ataattgtgc aattactgtt gtcgagcaag tagttcgcaa taacgaaatc
    55081 gtttgtgacc acagtcagtg actccatgtg aatcagatgc tgtgctatcg ctaacgtggt
    55141 cgttcctgca tccagataga tacaacttcc cggctgaaca agacttgccg ccagcttgcc
    55201 aatagccgct ttttgcgtca ttgctagcgc agtttttacc tgatgagaag gttcatgcgc
    55261 cacgcgtccc ggagactgga cgcctccgga caccagcaca acggctccct gctgctccag
    55321 tttttgtaaa tcccgacgaa tggtcatatg tgatacattc attctgtccg ttagttcagc
    55381 aatactgaca atgccttttt cagctaccat ctcaaggatg atttggcgac gctctacggg
    55441 tatcaacttt tgctccttcc tttgtcctgc tgacattcta cgctatttgc ctgcgaaacg
    55501 tgcgcggcgc aactaacgct tagttcacat aaaataacac acaatgttaa tttatgtgaa
    55561 tcggctcacc atatcgttat cttccagcgc ttatattcac aatatcaaac aaaatatcac
    55621 ttaaattaac aaggagagca gatgaaaacg ggatctgagt ttcatgtcgg tatcgttggc
    55681 ttagggtcaa tgggaatggg agcagcactg tcatgtgtcc gcgcaggtct ttctacctgg
    55741 ggcgcagacc tgaacagcaa tgcctgcgct acgttgaaag aggcaggtgc ttgcggggtt
    55801 tctgataacg ccgcgacgtt tgccgaaaaa ctggacgctc tgctggtgct ggtggtcaat
    55861 gcggcccagg ttaaacaggt gctgtttggt gaaacaggcg ttgcacaaca tctgaaaccc
    55921 ggtacggcag taatggtttc ttccactatc gctagtgctg atgcgcaaga aattgctacc
    55981 gctctggctg gattcgatct ggaaatgctg gatgcgccag tttctggtga tgcagtaaaa
    56041 gccgctaacg gtgaaatgac tgtcatggcc tccggtagcg atattgcctt tgaacgactg
    56101 gcacccgtgc tggaagccgt tgccggaaaa gtttatcgca taggtgcaga accgggacta
    56161 ggttcgaccg taaaaattat tcaccagttg ttagcgggcg tacatattgc tgccggagcc
    56221 gaagcgatgg cacttgcagc ccgtgcgggg atcccgctgg atgtgatgta tgacgtcgtg
    56281 accaatgccg ccggaaattc ctggatgttc gaaaaccgga tgcgtcatgt ggtggatggc
    56341 gattacaccc cgcattcagc cgtcgatatt tttgttaagg atcttggtct ggttgccgat
    56401 acagccaaag ccctgcactt cccgctgcca ttggcctcaa cagcattgaa tatgttcacc
    56461 agcgccagta acgcaggtta cgggaaagaa gacgatagcg cagttatcaa gattttctct
    56521 ggcatcactc taccgggagc gaaatcatga tcaagattgg cgttatcgcc gatgatttta
    56581 ccggcgcgac ggatatcgcc agttttctgg tggaaaacgg tctaccaacg gtacaaatta
    56641 acggtgttcc aacaggtaaa atgccggaag caatcgacgc actggtgatc agcctgaaaa
    56701 cgcgctcctg tccggtggtt gaagccacac agcaatcgct ggcggctctg agctggttgc
    56761 aacagcaagg ttgcaaacag atctatttca aatactgctc tactttcgac agtacggcga
    56821 aaggtaatat cggcccggtt accgatgcat taatggatgc tctcgacacg ccgtttacgg
    56881 tcttctctcc ggccctgtcg gtcaacggac gtacggttta tcaggggtat ttgttcgtaa
    56941 tgaatcaact gctggccgaa tccgggatgc gccatcaccc ggtaaatccc atgaccgaca
    57001 gctatcttcc ccgtctggtt gaagcgcaat ccacagggcg ctgcggcgtc gtttcggcac
    57061 atgttttcga acaaggtgtg gatgccgttc gtcaagagct ggctcgctta cagcaagagg
    57121 gctaccgcta cgcggtgctt gatgcgctga ccgaacacca tctggaaatt cagggagaag
    57181 ccttgcgcga tgccccactg gtaacgggcg gttctggtct ggcgattggc ctggcccggc
    57241 agtgggcgca agaaaacggt aaccaggctc gcgaagcagg gcatccgctc gctgggcgcg
    57301 gcgtagtgct ctccggttca tgctctcaaa tgaccaaccg ccaggtggca cattaccgtc
    57361 aaattgcacc agcccgtgaa gttgatgtgg cacgctgcct ctcaaccgaa actctggccg
    57421 cttatgcaca cgaactggca gagtgggttc tgggccagga aagtgtactt gctccactgg
    57481 tttttgccac cgccagcact gacgcattgg cagcaattca acagcaatac ggtgcacaaa
    57541 aagccagtca ggcagtagaa actctgtttt ctcaactagc ggcgcggtta gcagcggaag
    57601 gcgtgacacg ctttattgtc gcaggcggtg agacctccgg cgtagtcaca cagagcctgg
    57661 gcataaaagg gtttcatatt ggcccaacca tttcccccgg cgtgccgtgg gtaaacgcac
    57721 tggataagcc tgtctcactc gcccttaaat ctggcaactt cggtgatgaa gccttttttt
    57781 cacgagccca aagagagttt ttatcatgag cgatttcgca aaagtagagc agtctttgcg
    57841 agaggagatg acgcggattg ccagttcatt ctttcagcgc ggctatgcaa ccggttcggc
    57901 tggcaatctg tcgctgcttt tacctgacgg gaatttactg gcgacaccga caggttcatg
    57961 cctgggcaat ctcgatccgc agcggctttc caaagtcgcc gcggatggcg aatggttaag
    58021 tggtgacaaa ccctcgaaag aggtgctctt tcatctggcg ctgtatcgca acaatccgcg
    58081 ctgtaaagcg gtggtgcatt tgcacagcac atggtcgacg gcgctttcct gcctgcaagg
    58141 gctggacagc agcaacgtta ttcgtccgtt cacaccatac gtggtgatgc ggatgggaaa
    58201 tgtcccgctg gtgccctatt accgaccggg cgataaacgc atcgcacagg atctggcgga
    58261 actggcagca gacaatcagg cttttttact ggcaaatcat ggcccagtgg tttgcggtga
    58321 aagcctgcaa gaagccgcca acaatatgga agagctggag gaaacggcaa agctgatttt
    58381 tattctcggt gaccgcccga tccgttatct gaccgcaggt gaaattgcgg aattaaggag
    58441 ttaatgcaat gcctcgtttt gcagctaatt tatccatgat gttcaccgaa gtgcctttta
    58501 ttgaacgctt cgccgcagcg cgaaaagccg ggttcgatgc tatggaattt ctgtttccct
    58561 atgactactc caccctgcaa atccaaaagc aactggagca aaaccatctg acactggcgc
    58621 tgttcaatac cgctcccgga gatattaatg cgggggaatg gggattatcc gcccttcccg
    58681 gacgtgagca cgaagcacac gcagacatcg acctggcact ggaatatgca ttggcgctca
    58741 attgtgaaca agtccatgtg atggcaggcg tcgtgcccgc tggcgaagat gctgaacggt
    58801 accgggcagt atttatcgat aatctccgct acgctgccga ccgctttgcg ccacacggca
    58861 agcgaatatt agttgaagca ctcagccccg acgttaagcc tcattatctc ttctccagcc
    58921 agtatcaggc actggctatt gttgaagagg ttgcgcgaga taacgtgttt attcaactag
    58981 atacttttca tgcgcaaaaa gtagatggca acctgacgca tttaatccgc gactacgctg
    59041 ggaaatatgc gcacgtacaa attgccggac tacctgatcg acatgaaccg gacgatggag
    59101 aaatcaacta tccgtggctg ttccgcctgt tcgatgaggt gggatatcag ggctggatcg
    59161 gttgtgaata taaacctcgt ggcctcaccg aagaagggct tggctggttt gacgcctggc
    59221 gctaattcgt taaatcccta attacaacgt acccatacat ccccccatct acggatgggg
    59281 taggttaact ataactttca gacagggttt cccatgtcca caattacatt gttatgcatt
    59341 gcgttagctg gcgtaatcat gctgttgctg ctggtcatca aggcaaaggt acaaccattc
    59401 gttgctctgc tcctcgtcag cctgttagtc gcacttgcgg cgggtatacc ggcgggcgaa
    59461 gtgggtaaag tgatgatcgc cgggatgggc ggtgtgcttg gttccgtcac tattattatt
    59521 ggtctgggcg ctatgctggg gcgtatgatc gaacactctg gtggtgcaga gtcactggct
    59581 aattatttca gtcgcaagtt aggtgacaaa cgaactatcg ctgcgctgac tctggcagcg
    59641 ttcttcctcg gtattcccgt cttctttgat gtcagcttta ttattcttgc gccaatcatt
    59701 tacggttttg ccaaggttgc caaaatatcg ccactcaaat ttggcctgcc tgtcgctgga
    59761 atcatgctaa ctgttcatgt ggcagtaccg ccgcatccag gccctgtcgc cacagcgggg
    59821 ttactccacg cagacatcgg ctggctaacc atcatcggta ttgcgatttc tattcccgta
    59881 gggattgttg gctactttgc agcgaaaata atcaataagc gccaatatgc gatgtcagta
    59941 gaagtactgg aacagatgca actggctccg gccagtgagg aaggcgcgac aaaattaagc
    60001 gataaaataa atccaccggg cgtcgcgctg gtcacctcgc taattgttat tcctatcgcg
    60061 attatcatga cgggtacggt ttccgcaaca ctgatgccgc cttcgcatcc cctgcttggt
    60121 acgctacagc tgatcggctc accaatggta gctctaatga ttgcgctggt gctggcattc
    60181 tggttattgg ctttacgtcg cggctggagc ttacaacaca ccagcgacat tatgggctca
    60241 gcccttccca ctgcggcggt agtgattttg gttactggtg ctggaggggt atttggcaaa
    60301 gtgctggtgg aatcgggcgt cggcaaagcc cttgccaata tgctacaaat gattgacctg
    60361 cctctgttac cagccgcatt tattatttca ctggctctgc gtgcatcgca ggggtcagca
    60421 accgtagcaa tcctgacaac cggcgggtta ctctcagaag cggtgatggg attgaatccg
    60481 attcagtgcg tattggtgac gctggcagcc tgctttggtg ggcttggcgc gtcacatatt
    60541 aatgactcag ggttctggat tgtgaccaaa tatctggggt tgtcggtagc agacggtctg
    60601 aaaacctgga cagtgttaac gaccattctc ggttttaccg gattcttaat tacctggtgc
    60661 gtatgggcgg taatttgacc ttaataaaaa ggtccgatgg gcatcggacc ttttattgtg
    60721 cacagaaaag gccagcctcg cttgagactg gcctttctga cagatgctta cttactcgcg
    60781 gaacagcgct tcgatattca gcccctgcgt ttgcaggatt tcacgcaaac ggcgcaggcc
    60841 ttcaacctga atctggcgaa cacgttcacg ggtgaggcca atttcacgac ctacatcttc
    60901 cagtgttgcc gcttcgtacc ccagcaaacc gaatcgacgt gccagcactt cacgctgttt
    60961 ggcgttcagc tcgaacagcc atttgacgat gctctgcttc atatcgtcat cttgcgtggt
    61021 atcttccgga ccgttctctt tttcatcggc caggatgtcc agcaacgctt tttcggaatc
    61081 accacccagc ggggtgtcta ccgaggtaat gcgctcgtta agacgaagca tacggctgac
    61141 gtcatcaact ggcttatcca gttgctctgc gatctcttcc gcacttggtt catggtccag
    61201 cttatgggac aactcacgtg cggttcgcag gtaaacgttc agctccttta cgatgtgaat
    61261 cggcaaacga atagtacggg tttggttcat aatcgcccgt tcaatcgtct ggcgaatcca
    61321 ccaggttgcg tatgttgaga agcggaaacc acgttccggg tcaaacttct ctaccgcgcg
    61381 gatcagcccc aggttgccct cttcgataag gtccagcaac gccagaccac gattgccata
    61441 acggcgggca atttttacca ccagacgcaa gttactctcg atcatccggc ggcgagaggc
    61501 gacatctcca cgcagtgcgc gacgcgcaaa ataaacttct tcttcggccg ttaacagtgg
    61561 tgaataacca atctcaccaa ggtaaagctg agtcgcgtcc aacactcgct gtgtggctcc
    61621 ctgcgataac agttcctctt cggccaaatc gttatcactg ggttcctctt ctactaaggc
    61681 cttttcgtca aaaacctcaa ctccgttctc atcaaattcc gcatcttcat ttaaatcatg
    61741 aactttcagc gtattctgac tcataaggtg gctcctaccc gtgatccctt gacggaacat
    61801 tcaagcaaaa gcctggttcc gccgatttat cgctgcggca aataacgcag cgggtttacg
    61861 gatttcccct tgtaacgaat ttcaaaatgc aagcgtgttg aactggttcc ggtgctaccc
    61921 atggttgcta ttttttgccc cgccttcact tcttgttgtt cccggaccag cattgtgtcg
    61981 ttatgggcgt aggcactcag gtaatcatca ttatgtttga tgataatcag attaccgtag
    62041 ccgcgcagcg cgttaccggc ataaacaacg cggccatctg cggtcgcgat aattgcctgt
    62101 cctttgctgc ctgcgatatc aatccccttg ttgcccccct cagaagcgcc aaaggtttcg
    62161 atcactttgc cctcagtcgg ccagcgccag gtggagatag gcgtactggt tgatgtactg
    62221 ctgacagttg gctcggttgt gcttgctgtt ggtaccgtta caggcgctgt gaccgtggtc
    62281 gcagctggct tgttgttcgg caacattttg ttagcactct gttcacccga agattcagaa
    62341 tacgtaattg tcggttgcga cgcaacagca acggtggaat tttgtgcagg cttgatcaca
    62401 actccttgct ctgctgcgtc ggcctgggta atggcatttc cgccagtgat tggcgtaccg
    62461 gaagcattac ccacctgcaa ggtctgacca acgttcagcg cgtatggtgc ctgaatattg
    62521 ttgcgctgag caaggtcacg gaaatcgttg ccagtaatcc aggcgatata gaaaagtgtg
    62581 tcgccttttt tcacggtata ggtactgccg ctataactgc ctttcggaat gttcccatac
    62641 tgacggttat agacgatgcg tccgttttcc atctgtaccg gctgctgagc tactggctgc
    62701 actggctgga tttgcggttg ctgggctgta gacgtcgtcc ccattttcgg cggcggcgta
    62761 atcaacatac cagaattggt atttgcaggc gcattgccat taacggagct gaccggtgcc
    62821 ggtggatttg aagtgtcaga acagcctgcc agccatagcg aaaccagtga caaagccgca
    62881 atgcggcgaa cggtgaattt tgggcttccc gcgctcattt atcccccagg aaaaattggt
    62941 taataaccag tgacataatt accgtgcaag gcaccctact gaacactgga aaagatgttc
    63001 acgatacgct gacctgcggc aaaataacca ggaaaaatcc aggtatttcc tcacgtttta
    63061 agccagctcc cccttcacta aagggacaaa gcgcacggcc tccacggtat cgataataaa
    63121 ttcgcctccc cgacgacgca cccgtttcaa atactggtgc tcctccccta cgggtaagac
    63181 gagaatcccg ccttcgtcca gctgcgtcat tagcgcagtt ggaatttccg gcggtgccgc
    63241 cgtaacaatg atagcgtcaa acggcgcgcg tgcctgccaa ccttgccatc catcgccatg
    63301 acgggttgaa acattatgta aatcaagatt tttcaggcgg cgacgcgcct gccactgcaa
    63361 acctttaatc cgttcgaccg agcaaacatg ctggacaaga tgcgccagga ttgccgtttg
    63421 atatcccgaa ccggtgccaa tttccagcac ccgcgactgc ggcgtcagct cgagtaattc
    63481 ggtcattcgc gccaccatat acggctgcga aattgtctgc ccctgaccta tcggcaaggc
    63541 gatattgtcc caggcttttt gttcaaacgc ttcatcaacg aatttttcac gcggcacggc
    63601 agcaagtgca ttcagcacct gctcatcctg aataccttgc gcacgtaatt gatccagaag
    63661 tgcttgtacg cgtctgctta ccattgcgtg ccaactccca cgctgtttaa ccagtctgaa
    63721 accacatctt gcgcgctatg cgcagttaaa tccacatgca gcggcgtgat ggagacatag
    63781 ccctcatcta ccgcagcaaa atcggtcccc ggaccggcat cacatttacc gcccggcggg
    63841 ccaatccagt acagcgtatt gccgcgcgga tcttgctgcg ggatcacctg atctgccgga
    63901 tgtcgtgtac cgcagcgcgt cacgcgaata cctttgattt gatccaaggg taaatccgga
    63961 acgttaatat taagaatacg tccggtgcgc agcggctctt tacacagtgc gcgcaaaatt
    64021 gaacaggtta ccgccgcggc agtgtcgtaa tgtttatgcc cgtcaagcga gacggccagc
    64081 gccggaaaac ctaaatgacg gccttccatc gcggcggcta ccgtaccgga ataaataacg
    64141 tcatccccca gattcggccc ggcgttaatg ccggacacaa caatgtccgg gcgcggacgc
    64201 atcagagcat tcacgccaag atagacgcaa tcggtcgggg ttcccatttg cacagcaata
    64261 tcaccatttt caaaggtaaa cgtgcgcagg gaggattcca gtgtcagaga atttgaagcg
    64321 ccgctgcggt tacgatcggg ggcgaccacc tgaacgtcag caaactcacg caaggctttc
    64381 gccagcgttt gtataccggg tgcatgtacc ccgtcatcat tactcagcaa tatgcgcata
    64441 atcacctgtt gtgttgataa gttccctgac aacgctggtt gcaaaactac ccgccggaag
    64501 ccagaaacgg atctctacgg tgacgtcatc ccaccaattc cagcttaatt gttgcggata
    64561 cagcagcatc gctctgcgcg cggcttcaac tttttcgcgc accagtaaag cttgtaattc
    64621 agtttctgcg gcgacagctg cttgttcgaa tgccagcgct ttacgctgag ttccccattc
    64681 gccactgccc ggcaatgcgg cggttatcat cagctcttta tcgttgacgc gatgctgtaa
    64741 ttccgccagt tcttcggtgg ttgctacaaa ccagctacca cgtccggcta attgtagcgc
    64801 atcgccgtca acaacttgat taacgtctgc ttttttgagg cgctcagcaa caatctgatt
    64861 aaacaacgca ctgcgggctg ccgacaacca aaaactccgt ttattgcgat cgcgcaccgg
    64921 agtattggtt tgcgcccagc gcagcgcgcc ctgcaagttg ctaccgccaa tcccaaaacg
    64981 ttgggcaccg aagtagttcg gtacaccttt tacgcaaata tcgatcagac gttgttcaac
    65041 gtcatcgcga ttgctcactt cgcgcagaac cagggtaaag gcgttacctt tcagcgcgcc
    65101 taaacgcagc ttgcgcttgt gccgcgcata ctccagcacc tggcagcctt ccagttgaaa
    65161 ggcgctcaga tcgggcattt ccttgcctgg cacgcgagcg cataaccact gttccgtaac
    65221 agcatgtttg tctttttgcc cagcgaagct gacttcacgg gcatgaattt tcaggaattt
    65281 cgccagtgca tccgccacaa aacgggtatt gcagccgttt ttgaggattc taaccagaat
    65341 atgctcacct tcaccatcag gctcaaagcc caaatcttcc accaccacaa agtcttccgg
    65401 attggctttc agcagcccgg tgccttgcgg tttaccgtgg aggtaagtga gattatcaaa
    65461 ctcaatcatt ttgttgcctt aatgagtagc gccaccgctt cacaggcaat cccttcccca
    65521 cgtccggtaa atccaagttt ttccgtagta gtggctttca cgttaacatc atccatatgg
    65581 cagccgagat cttcggcaat aaacacgcgc atttgtggaa tgtgcggcaa catcttcggt
    65641 gcctgagcga tgatagtgac atcgacgttg cccagggtat aacccttcgc ctgaatacga
    65701 cgccaggctt cgcgtagcag ctcgcggctg tcggcacctt taaatgccgg atcggtatcc
    65761 gggaacagct tgccgatatc ccccagcgcc gccgcgccaa gcaatgcatc ggtcaacgca
    65821 tggagcgcca cgtcgccatc agaatgcgcc agcaatcctt tttcgtaagg aatgcgtacg
    65881 ccaccaatga taattgggcc ttcaccgcca aaggcatgta cgtcaaaacc gtgtccaatt
    65941 cgcattatgt attctcctga tggatggttc gggtgaggta aaactcggcc agtgccaaat
    66001 cttccgggcg cgtgacttta atgttatccg cacggccttc gaccaactga ggatggaatc
    66061 cgcaatattc cagcgccgag gcttcgtcgg taatagtcgc gccttcattt agagcgcgcg
    66121 tcagacagtc atgtaacagc tcacgaggga aaaattgcgg cgtcagcgcg tgccataagc
    66181 cgttgcgatc aacggtatga gcaatggcat ttttgcccgg ttcggcacgt ttcatcgtat
    66241 cgcgcactgg tgcggctagg atccctcccg tgcggctggt ttcgctcaac gccaacaatc
    66301 gcgcgaggtc atcctgatgc agacaaggac gagcggcgtc atgcaccaat acccactgcg
    66361 cgtcgccagc ggctttcaaa cctgccagca cggaatcggc acgctcatca ccgccatcta
    66421 caacggtgat ttgcggatga ttcgccagag gaagttgtgc aaaacggcta tcgccaggac
    66481 ttatggcaat gacgacacgt ttcacccggg gatgcgccag cagcgcatgc accgagtgtt
    66541 caagaatggt ttgattaccg attgagagat attgcttagg acattccgtt tgcattcgac
    66601 ggccaaatcc ggccgccgga accacggcgc aaacatccaa atgagtggtt gccatgttaa
    66661 ttcccgggct gatttatcga ttgttttgcc ccgcagactg tgcgcgcttc gacgcgtcag
    66721 gcaccagacg ataaaaagtt tcgcccggcc tggtcatgct gagttcatta cgcgcacgct
    66781 cttcgagcgc ctcctggccg ccattgagat cgtcaatttc ggcaaaaagt tgatcgtttc
    66841 gcgctttaag tttcgcgttt gtagcttgct gtgccgccac atcatcattg acgcgggtat
    66901 agtcatgtat accgttctta ccgaaccaca gcgaatactg tagccagacc agaatagcca
    66961 gcaacagcag cgttagttta cccatcctgc cccctgaaaa acggcatcat catcccatgc
    67021 atccgaagac gactctacat cctctgttgg ggataccgcg acaacgcggg caaatgtacc
    67081 acatttgtcc attgttacgt atacctaggg cgtgcagaac ataatctcat tattagttac
    67141 ggtttgaatt atgaacagag gagacaagaa agtacaaatt agcccagtag ccacataaac
    67201 agtgcgccaa acataatgcc tactgtcacc agggtgaaaa caatactgta gcgtagcttt
    67261 ccgtccatca atgaatgcag cgcaatcccc accactaccg cgacaggcat cagtgccaga
    67321 aagaaaggcc aggtgtagat aaagaagaac agcgtgttag agccataaat caacatcggc
    67381 atcgccagcg caaataacca ggagataaaa ccgaccacgg caccaggtag tgaccatgtg
    67441 gtttcttcat cctcagtaag gctgtcgtta tttgttagtg taatgttatg gctattacgc
    67501 atatttgatc ctgttacttt gacgaaccgg gcatggaaac ccggtggtgt ctcaggatct
    67561 gataatatcg ttctgtctca acagatctaa taattgctgt accaaatttg ttactaattg
    67621 ttcaccattg agatgaattt ctgccgattc aggcgcttcg taaacggaat ctattcccgt
    67681 aaagttgcgc agttcaccgg cacgcgcttt cttatataag cctttgggat cgcgggcttc
    67741 gcaaatcgcc agcggcgtat cgacaaacac ttcgataaag cgcccttctc ctacgcgttc
    67801 gcgaaccatc tggcgttcgg cgcggtgtgg cgagataaat gcggtcagca ccaccagtcc
    67861 ggcttcaacc atcaaattcg ccacttcacc gacgcgacgg atattctctt tacgatcggc
    67921 atcgctaaaa ccgagatcgc tgcataatcc gtggcgaaca ttgtcgccat ccagcagata
    67981 cgtactgacg ccgagtttat gtaacgcctc ctccagcgcc ccggcgaccg ttgatttacc
    68041 ggacccagag aggccggtaa accacagcac tacaccacga tgaccgtggt gtagctcgcg
    68101 ttgttgcaca gtgaccggat ggctatgcca gacgacgttt tcgtcatgca gcgccattat
    68161 ttatccccca gcaaatcgcg cgcgccccag tgcggaaagt ggcgacgaac cagggcattc
    68221 aattccagtt cgaatgcact gaattcagat gacgcaacgg cggcctcgtt tttcggctca
    68281 tgcaccatac cggcaccaac agtcacgttg ctcaggcgat cgataaaaat cagcccaccc
    68341 gtcaccggat tttgttgata acgatctaac accagcggct cgtcaaaagt gagatccacg
    68401 aggccgatcc cattcagtgg caggttttca acttcacgct gggtaaggtt attaatatca
    68461 accggatagc gaatgccatc aacacgcgcg cgcgtcttct taccggcaat tttgatgtcg
    68521 taactctggc ccggggaaag cggctgttcc gccatccata ccacatccac cgacgcgctc
    68581 ggcaccgccg gtaacgcttc gtctgccgcc agcagcagat cgccacggct gatgtcgatc
    68641 tcatccgtca gcaccagggt gatcgcttct ccggcaaagg cttcttcgcg atcaccatca
    68701 aaagtcacga tccgcgcgac gtttgattcc acaccagagg gcagcgcttt gacacgttgc
    68761 ccgacttcca cgcgaccgga tgccagcgtt ccggcgtagc cacgaaaatc gagattcggg
    68821 cgattaacgt actgcaccgg gaagcgcatt ggctgggcat ccaccactcg ctggatctcc
    68881 acggtttcca gcacttcgag cagtgtcgga ccgctgtacc acgacatact ttcactttgc
    68941 gatgccacgt tgtcgccttc cagtgcagag agcggcacaa agcggatatc cagattaccc
    69001 ggcagctgcc cggcaaaggt caaataatct tcacgaatat gggtgaacgt ctcttcactg
    69061 taatccacca gatccatttt gttgatcgcc acgaccagat gtttgatccc caacagtgtg
    69121 gagataaaac tgtgacgacg ggtttgatcg agcacgcctt tacgggcatc gatcagtaag
    69181 atcgccagtt cacatgtcga tgcgccagtt gccatattgc gagtgtactg ctcgtgccct
    69241 ggggtgtcgg cgataataaa tttacgcttc tcggtagaga aataacggta agccacgtca
    69301 atggtgatgc cctgttcgcg ctcagcttgc aggccgtcca ccagcagtgc cagatccagc
    69361 ttttcgccct gggtgccgtg acgcttactg tcgttatgca gcgatgagag ctgatcttcg
    69421 tagatttggc gggtatcatg cagcaggcga ccaatcaggg tacttttgcc gtcatcgacg
    69481 ctaccacagg tcagaaaacg cagcaggctt ttatgttgtt gcgcaatcat ccaggcttcg
    69541 acgccgcctt cattggcgat ttgttgtgca agtgcggtgt tcatcttaaa aatacccctg
    69601 acgttttttc agctccatag accccgcctg gtcgcggtca atcacgcggc cctgacgttc
    69661 actggtggta gaaaccagca tctcttcgat gatctccggc agtgtttgtg catttgactc
    69721 caccgcaccg gtcagcggcc agcagcccag cgtacggaaa cgcaccatcc gttttttaat
    69781 cacttcgccc ggttgcaggt cgatacggtt gtcatcaatc atcatcaaca taccgtcgcg
    69841 ttccagaacc ggacgttccg cagcgagata cagtggcaca atgtcgatat tttccagcca
    69901 gatgtattgc cagatatcct gctcggtcca gttagagagc gggaagacgc ggatgctttc
    69961 acctttgtta atttgcccgt tgtagttgtg ccacagctcc gggcgctgat ttttcggatc
    70021 ccagcgatgg aagcggtcac ggaaagagta gattcgctct ttagcgcggg atttctcttc
    70081 atcacggcgc gcaccaccga aggcggcatc aaaaccgtat ttgttcagcg cctgtttcag
    70141 gccttcagtt ttcataatat cggtatgttt cgcgctgccg tgtacgaatg gattaatccc
    70201 catcgccacg ccttccgggt ttttatgcac cagcagctcg cagccgtagg ctttagcagt
    70261 acgatcgcgg aactcataca tctcgcggaa tttccagccg gtatcgacat gcagcaacgg
    70321 gaaaggcagc gtacctggat aaaacgcctt gcgcgccaga tgcagcatga cgctggaatc
    70381 tttaccgata gagtagagca tcaccggatt tgagaattct gccgccacct cgcgaataat
    70441 gtggatgctt tccgcctcca gttgccgcag gtgagtaagt cgtttttgag ccataaccgt
    70501 tcctttgcaa taccgctatt ttcttgccat cagatgtttc gactataggg agcgtaagag
    70561 aacgaatgaa attaccaatt agaatgagta gttccttaac ggaataacga tttggcaaag
    70621 ctaatatcaa aaagtgctta aggcaccgga tttcgggcgt ttaggaagat ttgaaattgt
    70681 tttagcgcag cggcagtttc atactatggc ggtaaaaaaa tttgcatggt atttaaggac
    70741 tcactatgtt ttccgcattg cgccaccgta ccgctgccct ggcgctcggc gtatgcttta
    70801 ttctccccgt acacgcctcg tcacctaaac ctggcgattt tgctaatact caggcacgac
    70861 atattgctac tttctttccg ggacgcatga ccggaactcc tgcagaaatg ttatctgccg
    70921 attatattcg ccaacagttt cagcaaatgg gttatcgcag tgatattcgg acatttaata
    70981 gtcggtatat ttataccgcc cgcgataatc gtaagagctg gcataacgtg acgggaagta
    71041 cggtgattgc cgctcatgaa ggcaaagcgc cgcagcagat catcattatg gcgcatctgg
    71101 atacttacgc cccgctgagc gatgctgacg ccgatgccaa tctcggcggg ctgacgttac
    71161 aaggaatgga tgataacgcc gcaggtttag gtgtcatgct ggaattggca gaacgcctga
    71221 aaaatacgcc taccgagtat ggtattcgat ttgtggcgac cagcggcgaa gaggaaggga
    71281 aattaggcgc tgagaattta ctcaagcgga tgagtgacac cgaaaagaaa aatacgctgc
    71341 tggtgattaa tctcgataac ttaattgttg gcgataaatt gtatttcaac agcggtgtaa
    71401 aaacccctga agcagtaagg aaattaacgc gcgacagggc gctggcaatt gcgcgcagtc
    71461 acggaatagc cgcaacgacc aatccggggt tgaataaaaa ttatccgaaa ggcactgggt
    71521 gttgtaatga cgcagaaata ttcgacaaag cgggcattgc tgtactttcg gtggaagcga
    71581 ctaactggaa tcttgggaat aaggatggtt atcagcaacg cgcaaaaaca gccgcattcc
    71641 ctgcgggaaa tagctggcat gacgtaagac tggataatca acagcatatt gataaggcac
    71701 ttcctggaag aatagaacgt cgctgccgtg acgttatgcg gataatgcta ccgttggtga
    71761 aggagctggc gaaggcgtct tgatgggttt gaaaatggga gctgggagtt ctaccgcagg
    71821 ggcggggaat tctaagtgat atccattatc gcatccagtg cgcccggttt atccccgctg
    71881 gcgcggggaa cacactaagc atacataact gtttttaaac aaatttattc cgcatcaaca
    71941 atctaccaac taaattaaaa catttcctta tttttaaaga acggataact tattgattat
    72001 caacaggaag aaaagaaacc aaacgtaacc catccaaatc caccggaata cgtctgtttt
    72061 ctccccaggt ctgaaattca aaacccgact cggtattggt cgcccaggcc atcaccacat
    72121 ttccgcaacc agccagttgg gtaatttgct gccagatcat ctcccgaata cgttttgatg
    72181 tatcaccaac atacacaccg gcacgcactt ccagtagcca gattgcgagc cgtccacgta
    72241 agcgtggcgg gacattttct gtaacaacca cgaccatgct catcagccgc gtcctcgatg
    72301 accgctatcg cccaacgttt caggttcggg gatggctggc ggtaacatat ccggcgcagg
    72361 ttgtggcggt tcaatttcac ctgcggcaag gacttcctca attaacggta ttaatttgcc
    72421 cgttaactta gtgctacgga aaatatcacg acaggctaat ctgacttctt tatcaggttc
    72481 tgcgggttgc ctcgccgcta tttcaaatgc ctttggtaca accgaatcaa atttaatgat
    72541 atcggctatg tcataaacaa atgaaagcgg tttgccacta tggataaacc caatagcggg
    72601 cgcatatccc gcggctaata ctgccgcttc agatataccg tacagacatg atgtagcagc
    72661 actgatgcag cgattcacaa catcgccttt ttcccagtct ttaggatcgt atttgcgacc
    72721 attccatttc acaccatatt gtttcgccag taatgcatac gtctggcgaa cgcgagatcc
    72781 ctcaattcca cgtagctgct ccactgaacg gcgagctggc ggtggctcac gaaaacgtaa
    72841 ttcatacatt ttgcgcacca ccttcagacg tagatcttcc gttaaagcca gctttgcctg
    72901 gtagagtaac ttatcagcac gcgccccacc gggttgtccg gaagagtaga cgcgaacacc
    72961 cgcttcaccg acccagacct gtagcgtccc caccgtggcg gccagatgca ccgccgcgtg
    73021 ggaaactctc gttcccggtt cgagcataat gcaggcgacc gatcccaccg gaatgtgcgt
    73081 gcggatcccg gttttatcga tcagcacgaa agcgccgtcc agtacgtcga tttgcccgta
    73141 ctggaggaag atcatagagg tgcgatcttt taacgggatc gggctcagcg gtacaaacgt
    73201 cacgcctctg ctccgggttt gatcagcatc agaccacagc cgaacgcgcg gcttttgcca
    73261 tacccctgac tgagacgttg cagaaataac ccgggatcgg tgaccgtaag catccccgta
    73321 taatccacgc tactgaactg gatcagttgc cgggagtttt cccgccgcag ttgctgttgt
    73381 cggtaggcat caaccgagat atccagcagt gtaaaaccac ttctctcccc ctgcgctgcc
    73441 agccagtcca gcgccgcctg ttgttgatgc aaccagacat cacttccttc cgcctgcccc
    73501 ctcacctgcc gtttcgcctc catcagcaga tcgtggcgct tgcccgcttt acagattgtt
    73561 ggattcgccc gcaggttgaa acaaagttgt tgtccggtac acagctcggg cgcaaatgac
    73621 cggcattcta tggtgaacgt atcactttcc gccgggcgtt cctgcgacag tacaaaaaag
    73681 cgaaacgcgc cctggagttc ttcccgacga taaagaaatt gcctttcttt gccgctaggg
    73741 aagagatccc acagccactg atgcatcaca tattcaccgc gatccaccag atgcagcaac
    73801 tgcgcaggcg aaagctggcc ggtatgtaag gttattcttg agaggtacat ggttcctcct
    73861 tgctgagcca cggcccctga ttgacggtgc gttccccaaa cagccactgc tgacgattta
    73921 aaggaacatc ccggcggcgt aatattttgc tcgcgaccag gccgtcgtgt ttcccttccc
    73981 accagcattc atcctgaagt ttcgggagtg aaactttcag tttatggaaa tgatcctgat
    74041 actgttggta tgcattacat aaggcatcac acgcgttgcc ttcgagcagt aacggcgcaa
    74101 gaggtaatgc cagcggatga ctttttcgcc ccagataaag cggaaaaact ggatggcgta
    74161 aaccgtcctg caactgttcg aggctgtaag gcgcatcggc tgttgttgcc accgccacca
    74221 tccaccaggc atcggtgtag tagtcgcgcc gggagataat cgcgctcaaa agctcagggt
    74281 cgctcaactc ttcgcgacgg ctgaaataac gtgctttacg cacctctttt ggcatctgga
    74341 ccgtgtgata atcccgtgcc cagcgcgggt tacggctggc gcaaaccacc agtgaatagt
    74401 ggcgattaaa cgcgtttaag cgttcggtat catcacgccg gatccctacc ccggcagcca
    74461 gcagccccag caatgctgag agcgaaggca gttcatgggt atgacgcact tcgccggggg
    74521 catcgacgcc ccaggatgcc atcggcccat gaagctgaaa aatcagatat tggctcataa
    74581 gccgcccctt acgcgcagat aaagtccagc acgtccttca tgcttccctg tttgttcatc
    74641 acgtcaaaac ttgcgtaatc ggtcttctgt tcgtagaccg tattcatatt ttcgcgaaga
    74701 gttgtaatac gctgcaccgc cacctctaac tgacgggtgc cattaatggg ttcatagaaa
    74761 gctgccgcca gagaacgcgg ttgatcggtg cctttttctg ccagcgccca ggaggcataa
    74821 gcccggctgg caaagctgtt ttgtttaccg gttggggaga ctttaagcgc ggcttccgta
    74881 aaggcgcgta tggtctgatt agctaacgct tcgtcaccgc cgaggttttc taccagcaga
    74941 tctttatcaa tgcagataag atataggtgt agaacagcgc agaaccgaat ccggtttcat
    75001 ctacatgacc ggcaccggca tcttcagaag cctggcgtaa atcatctacg gcggtgaaaa
    75061 aatcattttc gacaatcgtt tcactgacac caaacgcatg cgcgacctgg caggcggctt
    75121 ctacattaaa cccgggtttt ttcgccagca tacgaccaaa catagcgata tctaccgcca
    75181 tacggtcttt acgtaacaaa gcgagatctt tctcttttgg cgcgcgcttt tcttctgcca
    75241 gttgatgggc cagcgctttt acggcgtcaa attctgccgg gctgatatgg acgagctgtt
    75301 cagtttcggc gctagtgagc ggatcttttg gttttttgtc gtttttttgt tttttgtctt
    75361 ttttggcttt cccaagataa tcggctatct ctactgccca ttcgatggct tttttatctt
    75421 cgattccttt ctcaatcagg atagttgccg cctcacgcgc aatacgcccg ctacgaacac
    75481 caatatggcc cgccagcgcc tgttcaaaaa gttcagaagt gcgccaagca cgcttcagac
    75541 tttgcgagga aacgcgcaga cgcgttgctc cacccagaat cacagttttc ggagagccgg
    75601 aatcatcacg gttaagattg gcagcagggt aagcggttaa caaatgaagc tgaataaatg
    75661 ttgtcatgag atagtccttt attaattttg ttcgttatcg gcgtcgccag cctggtaata
    75721 ttccagcgcc cagcgcccag cgcccagcgc ccagcgccca gcgcccagcg cccagcgccc
    75781 agcggatacg gataaattct gttggtcgct gctggcggcg gtgatgattg agcaggtcat
    75841 cgctctcctg gcaccagcgg aagaccccct cttctagaga gtcaagattg acggaaccgt
    75901 ttaataattt gaccgcacgg cgtaactgcc gcaataaatc atccggcgtt tttactgcca
    75961 acaaacgagt aaaccgcccc tttttcatta ccgccgccag ttgcgcggca aaaggctgcc
    76021 gttcgtcaat agctttaaca ttggcgctaa ctgctgctat cagcgctagt gcggtgatac
    76081 gccactcggg ttcatcctgc cactttattt gtctgttctt aagaaacagg cgaaatccat
    76141 ccgtcagaca aacatcatta accgtcgtac tacgccgcag actggcacgc tcgccgcgtt
    76201 tatcctgcaa ctcttcatgc catttacgca gcgcaacttt atgctcatct tttacaatac
    76261 tcattcagca gcctcctgct ttttctccct ggcggcgtta gcattttgct tctccgctga
    76321 tgttgtaaaa tatttcttgc gtgcggtcat gacgcgttcc aaatcaacgg gctcatatgg
    76381 attggtaaag acacgatcgt caaaatcctg acgcgcgaat aaccacattt ccttttgcca
    76441 tttactgagt aattcgtccg gatcctgacc ttcttcaatt ttgcgcacta atctcaggaa
    76501 tcgatgctga gttttgttcc agaagtcaat atccacaaaa ccgaaatcaa gctttgtggt
    76561 tttcttctca gagaaccatg cttctttcaa cgctcggtgt aacaagctta gaatgtgtga
    76621 tgccgcttgc gctgccagac gcaacttagg tattaggtct tcttttttgt ttaacaacag
    76681 cgggaaatgg tgttcatacc aacaacgaac cttcatatct tcaaaatcaa aaccaaatcc
    76741 ccataagccc acccttgtct gctttagatt gctggcattc aaaagtttca cgacctgtgc
    76801 ggggagttca gtattgtttt ttgagttacc tacctctatg aggcctaacc agtcgcgcca
    76861 gattaaacca ccaggttgtg gtttaactga gtaaaaatct ccaccctctt taagcggcag
    76921 acggtaaggt gttagaggat ggcgccacat gacgtattga acaccatagt ttttgagtga
    76981 catcaagccc aaaagagcat cgctctgcct accgcaaatg tcgcagttac ctattgaggt
    77041 tgtcttaaaa tcaatacgta tacgtcgtgg cattccccag taggcctgaa gtttattgac
    77101 ttgttcatcc gttaccacag caccgtccag ttcgctggta cgcgtcggtg caagccaagg
    77161 aaagaccagg tcatcaaagg tttttggtaa aggtaaatcg gcttcatctt gcggcattac
    77221 gtttagccac agctttcgcc acaaaggggt ttgttgattg ccctgatact ccagcaattc
    77281 tataagtgtc gtcagaggcc ctccgccacg tagcccagga tagtaaccgc gtccacctat
    77341 aggtgcattc aactggattg aaaaaagcgc taaaggcaca caatgcaggc acagatgctg
    77401 agttgtgtct cgcttaataa aatggtctgt atttcgttct tttgtttgtt ttcctggtgc
    77461 gtcaggaaga agcgaagcaa taaaagttgc cttaactttt aattcatcaa aatcctgcat
    77521 aaatgaaggg gaatctggcc caaactgaaa agcatgttct aaagacagca atgcttccct
    77581 tagcttttca gcttccagtc cgtcttccca gatatcatcc caactacgtt gatcttttgg
    77641 cgcgaagctg gtttgtagta gccccagcaa aaactgccag gccgccccct ggagatctgc
    77701 ccgcggcgca gcgatatcga caacattttc atcagccaga tcgactggtg ccagtttgcc
    77761 tgtcgttccg tctttaaaac gaacgggcaa ccacggggtt gtcagaagtg aaaacgagtt
    77821 catacgcatc ctctcgtaaa aaagaccatc ccaggtcggt tgtccatcct tccatccttt
    77881 tctgtatatc aactattcag agagtcttgt cgcagacatc tcaaccaacc ttgccaatca
    77941 atccctccct ggccgaatac ccgcaacttt cgtcatcggt gactaaaatc acgtttgcca
    78001 tttccggatc ttgccgctgt tcaacgcacc actgcctgaa cgcatcccct tccagtaaag
    78061 aaaactcatc ccgatgtttt ttccaccagc ttcggcgcac tctgacaacg ctcatttccc
    78121 atgcgtgagc accggtggca taaggcttca ccacaccgtc aatacaggta gccagccaca
    78181 gggaaacaga ctcttcagcc agacgtgtcg acagtttttc cggaaggtaa tcgttgatat
    78241 tggcggcata gccgagcctg aagttcagca catacttttt agcccttgcg cgatcacagt
    78301 aatatttgcc cacttgctcc tgctcgctgc gggcaaatcc ttccggcatt accacgtcct
    78361 caccgtaaac tgattcaata agaagccggg ctgcgtgcgg catctgaata gcgccttgct
    78421 cacgcagcac acgctgcgtc agccagattc gcccatgatc gggatagaca tatgcactgt
    78481 tacgcatggc actgccgaac cattcgtcac caggagcgtc atcccagacg ggggccagaa
    78541 tcagcaattc agggggggaa cgctcgtctt ttccgtcacg ctttaactga ccattaatat
    78601 cgcggatatg ccgctgtaat cgccccgctc gctggattag caaatcaatg ggggccaggt
    78661 cggagatcat ttcgtccagg tcaatatcca cgctttgttc aattacttgt gtacaaacaa
    78721 tgacttgaga cgctctctgt aaactacaat atttaccaaa gcgtgccagc gtttccgttt
    78781 caattcgctg gcgatcgcta aaagcaaagc ggctatgaaa aagtgaaagg ctggaagcag
    78841 gaatgacgcc gcgggcaagc agctgacgat acacctgaat agcgtcatca acagaattcc
    78901 gaatccaggc gatgcatttc ccctgactta ccgccgattc gatacgcgca atacactctt
    78961 gttcactatg gagccaaccc acgctcacgc tacgttcaac ttctttgcgc gtcgctaccc
    79021 ggtgcgaatg tacatcggtt ttcgtgacat gcgtcagcca ggggtaatca tcttttccca
    79081 ggagtggggc ttcttgctgg ccctctgcac cacgcgcaaa ggcggcgacg agtttgtcgc
    79141 gctgctgttg agataacgta gcagaaagca aaataacgct gtttccgcca cgcgcctgcc
    79201 gctcgatcag cccttcaaga atgcacgaca tataagcgtc acaggcgtgg atctcatcag
    79261 ccagcaggat tttgttactc agccccagaa gccgcagatt attatgttta aacggcatca
    79321 ctgccatcat cgcctgatcc agggtgccga cgccaatttc agccagcaac gccttcttgt
    79381 tactgtcggc aaactaggcc gcacaaccct ggctgaaagc ttgttcatcc ggttcttctg
    79441 acccgattaa atcaccggac cagagtgatt catta
//
LOCUS       DAJVUP010000003        76016 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.003, whole genome shotgun sequence.
ACCESSION   DAJVUP010000003 DAJVUP010000000
VERSION     DAJVUP010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 76016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 76016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..76016
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.003"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            138..761
                     /gene="iprA"
                     /locus_tag="OQQ75_000178"
     CDS             138..761
                     /gene="iprA"
                     /locus_tag="OQQ75_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide resistance inhibitor IprA"
                     /protein_id="HCS1974634.1"
                     /translation="MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNSEDT
                     FFILEGVISLRREENVLIGITQASYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQT
                     ITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI
                     GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINCLPSEY"
     gene            complement(762..1919)
                     /gene="ampH"
                     /locus_tag="OQQ75_000179"
     CDS             complement(762..1919)
                     /gene="ampH"
                     /locus_tag="OQQ75_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine-
                     carboxypeptidase/endopeptidase AmpH"
                     /protein_id="HCS1974635.1"
                     /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY
                     GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD
                     QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
                     REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMK
                     DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR
                     SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGF
                     ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS"
     gene            2271..3491
                     /gene="sbmA"
                     /locus_tag="OQQ75_000180"
     CDS             2271..3491
                     /gene="sbmA"
                     /locus_tag="OQQ75_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706191.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide antibiotic transporter SbmA"
                     /protein_id="HCS1974636.1"
                     /translation="MFKSFFPKPGAFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ
                     IPISAARFWSLDFLIFYAYYIVCVGLFAFFWFIYSPHRWQYWSILGTALIIFVTWFLV
                     EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS
                     HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLVA
                     FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE
                     AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG
                     LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE
                     LDGDKIQEVTHTLS"
     gene            3504..4598
                     /gene="yaiW"
                     /locus_tag="OQQ75_000181"
     CDS             3504..4598
                     /gene="yaiW"
                     /locus_tag="OQQ75_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-exposed outer membrane lipoprotein YaiW"
                     /protein_id="HCS1974637.1"
                     /translation="MSRVNHLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ
                     KMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIA
                     WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLISMVPM
                     GQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL
                     NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE
                     LATRKLAGKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAEAKTGKSLPREMLPGI
                     QLESPKITRNLTTAWFAKRVDERRARCMKQ"
     gene            complement(4657..4965)
                     /locus_tag="OQQ75_000182"
     CDS             complement(4657..4965)
                     /locus_tag="OQQ75_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiY family protein"
                     /protein_id="HCS1974638.1"
                     /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL
                     LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ
                     "
     gene            5225..5437
                     /locus_tag="OQQ75_000183"
     CDS             5225..5437
                     /locus_tag="OQQ75_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414914.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2754 domain-containing protein"
                     /protein_id="HCS1974639.1"
                     /translation="MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVG
                     LVTWVISFWLAGLIIRRRDEETENAQ"
     gene            complement(5461..6555)
                     /gene="ddlA"
                     /locus_tag="OQQ75_000184"
     CDS             complement(5461..6555)
                     /gene="ddlA"
                     /locus_tag="OQQ75_000184"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1974640.1"
                     /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID
                     KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVI
                     FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT
                     LTRANRHNISFAEVESKLRLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV
                     IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP
                     EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA
                     SGLGYTDLITRLIELALERHAADNALKTTM"
     gene            6633..6790
                     /locus_tag="OQQ75_000185"
                     /pseudo
     CDS             6633..6790
                     /locus_tag="OQQ75_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7017..7277
                     /gene="iraP"
                     /locus_tag="OQQ75_000186"
     CDS             7017..7277
                     /gene="iraP"
                     /locus_tag="OQQ75_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraP"
                     /protein_id="HCS1974641.1"
                     /translation="MKNLIAELLLKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND
                     QQRLIEQVEGALYEVKPDASIPDDDTELLRNYVKKLLKHPRQ"
     gene            7378..8793
                     /gene="phoA"
                     /locus_tag="OQQ75_000187"
     CDS             7378..8793
                     /gene="phoA"
                     /locus_tag="OQQ75_000187"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414917.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HCS1974642.1"
                     /translation="MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGA
                     RRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL
                     TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKA
                     AGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLL
                     NARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNAVTEANQQKP
                     LLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTLNPQRNDSVPTLAQMTDKAIELLSK
                     NEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKDGNTLVIVTADH
                     AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAAN
                     VVGLTDQTDLFYTMKAALGLK"
     gene            8912..9232
                     /gene="psiF"
                     /locus_tag="OQQ75_000188"
     CDS             8912..9232
                     /gene="psiF"
                     /locus_tag="OQQ75_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiF"
                     /protein_id="HCS1974643.1"
                     /translation="MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQA
                     LKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACL
                     KKAA"
     gene            9334..10449
                     /gene="adrA"
                     /locus_tag="OQQ75_000189"
                     /gene_synonym="dgcC"
     CDS             9334..10449
                     /gene="adrA"
                     /locus_tag="OQQ75_000189"
                     /gene_synonym="dgcC"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase AdrA"
                     /protein_id="HCS1974644.1"
                     /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP
                     RAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNL
                     KTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLEL
                     TGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGV
                     YNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQ
                     ITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVG
                     VAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA"
     gene            complement(10466..11275)
                     /gene="proC"
                     /locus_tag="OQQ75_000190"
     CDS             complement(10466..11275)
                     /gene="proC"
                     /locus_tag="OQQ75_000190"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HCS1974645.1"
                     /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPNKVAA
                     LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTL
                     DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
                     AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET
                     GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS"
     gene            11395..11853
                     /locus_tag="OQQ75_000191"
     CDS             11395..11853
                     /locus_tag="OQQ75_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414921.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HCS1974646.1"
                     /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF
                     IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATI
                     RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG"
     gene            12036..12560
                     /gene="aroL"
                     /locus_tag="OQQ75_000192"
     CDS             12036..12560
                     /gene="aroL"
                     /locus_tag="OQQ75_000192"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroL"
                     /protein_id="HCS1974647.1"
                     /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT
                     VAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCA
                     PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV
                     ISEIRSALAQTINC"
     gene            12610..12801
                     /gene="yaiA"
                     /locus_tag="OQQ75_000193"
     CDS             12610..12801
                     /gene="yaiA"
                     /locus_tag="OQQ75_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YaiA"
                     /protein_id="HCS1974648.1"
                     /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH
                     PTAQEAMDAKKRYEDPDKE"
     gene            13059..13736
                     /locus_tag="OQQ75_000194"
     CDS             13059..13736
                     /locus_tag="OQQ75_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AroM family protein"
                     /protein_id="HCS1974649.1"
                     /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE
                     VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI
                     SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL
                     GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR
                     LAAELLV"
     gene            13808..14092
                     /gene="ppnP"
                     /locus_tag="OQQ75_000195"
     CDS             13808..14092
                     /gene="ppnP"
                     /locus_tag="OQQ75_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HCS1974650.1"
                     /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE
                     MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL"
     gene            14240..14581
                     /locus_tag="OQQ75_000196"
                     /pseudo
     CDS             14240..14581
                     /locus_tag="OQQ75_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308469.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2773 domain-containing protein"
     gene            14578..14661
                     /locus_tag="OQQ75_000197"
     CDS             14578..14661
                     /locus_tag="OQQ75_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974651.1"
                     /translation="MTQRPWSKLQHKTHNIAALKIIVRRSE"
     gene            complement(14739..15650)
                     /gene="rdgC"
                     /locus_tag="OQQ75_000198"
     CDS             complement(14739..15650)
                     /gene="rdgC"
                     /locus_tag="OQQ75_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HCS1974652.1"
                     /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG
                     WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT
                     EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
                     LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE
                     ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD
                     ADFILMTGELAALIQNLIEGLGGEAQR"
     gene            15775..16683
                     /gene="mak"
                     /locus_tag="OQQ75_000199"
     CDS             15775..16683
                     /gene="mak"
                     /locus_tag="OQQ75_000199"
                     /EC_number="2.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414928.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructokinase"
                     /protein_id="HCS1974653.1"
                     /translation="MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIA
                     TLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRL
                     ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHISGNGTAGEWGHNPL
                     PWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESD
                     PVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVPQLIKQFVFGGE
                     CETPVRKAKHGDSSGVRGAAWLWPQE"
     gene            complement(16826..18010)
                     /gene="araJ"
                     /locus_tag="OQQ75_000200"
     CDS             complement(16826..18010)
                     /gene="araJ"
                     /locus_tag="OQQ75_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414930.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter AraJ"
                     /protein_id="HCS1974654.1"
                     /translation="MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMI
                     SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG
                     FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
                     LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAW
                     FSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIV
                     LALLMFFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN
                     LGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP
                     LG"
     gene            complement(18136..21279)
                     /gene="sbcC"
                     /locus_tag="OQQ75_000201"
     CDS             complement(18136..21279)
                     /gene="sbcC"
                     /locus_tag="OQQ75_000201"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcC"
                     /protein_id="HCS1974655.1"
                     /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT
                     TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR
                     NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA
                     FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQV
                     QSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKA
                     QPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHA
                     AKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHA
                     EQKLNALAAITLTLTADEVATALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLMVTIQ
                     NGSLEQTQRNVALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL
                     CGSTSHPAVKAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENE
                     AQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHKRQLRLLSQRHELQGQ
                     IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQN
                     ELTTLQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQD
                     VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQT
                     LVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDA
                     DNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQL
                     TRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSH
                     KTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK
                     KINGLGYSKLESTFAVK"
     gene            complement(21276..22478)
                     /gene="sbcD"
                     /locus_tag="OQQ75_000202"
     CDS             complement(21276..22478)
                     /gene="sbcD"
                     /locus_tag="OQQ75_000202"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HCS1974656.1"
                     /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII
                     VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT
                     TVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIISSQAGLNGIEKQQHLLAAITDY
                     YQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI
                     ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT
                     QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALAESLPVE
                     VLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLH
                     TLAGEHEA"
     gene            22668..23357
                     /gene="phoB"
                     /locus_tag="OQQ75_000203"
     CDS             22668..23357
                     /gene="phoB"
                     /locus_tag="OQQ75_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate response regulator transcription
                     factor PhoB"
                     /protein_id="HCS1974657.1"
                     /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE
                     PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY
                     ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEF
                     KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV
                     RGTGYRFSTRF"
     gene            23415..24710
                     /gene="phoR"
                     /locus_tag="OQQ75_000204"
     CDS             23415..24710
                     /gene="phoR"
                     /locus_tag="OQQ75_000204"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HCS1974658.1"
                     /translation="MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI
                     WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
                     GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD
                     FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
                     LTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNE
                     KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP
                     EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA
                     IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD"
     gene            25117..26436
                     /gene="brnQ"
                     /locus_tag="OQQ75_000205"
     CDS             25117..26436
                     /gene="brnQ"
                     /locus_tag="OQQ75_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter carrier
                     protein BrnQ"
                     /protein_id="HCS1974659.1"
                     /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
                     AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT
                     ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
                     ILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
                     TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG
                     GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS
                     QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF
                     SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH"
     gene            26512..27885
                     /gene="proY"
                     /locus_tag="OQQ75_000206"
     CDS             26512..27885
                     /gene="proY"
                     /locus_tag="OQQ75_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline-specific permease ProY"
                     /protein_id="HCS1974660.1"
                     /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV
                     LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV
                     AIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI
                     IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII
                     GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH
                     MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT
                     VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK
                     ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD
                     RQLAENQ"
     gene            28041..29763
                     /gene="malZ"
                     /locus_tag="OQQ75_000207"
                     /pseudo
     CDS             28041..29763
                     /gene="malZ"
                     /locus_tag="OQQ75_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706291.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin glucosidase"
     gene            complement(29768..30349)
                     /gene="acpH"
                     /locus_tag="OQQ75_000208"
     CDS             complement(29768..30349)
                     /gene="acpH"
                     /locus_tag="OQQ75_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HCS1974661.1"
                     /translation="MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHM
                     HRRIDVLTDNLPEVREAREWFRRETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFI
                     CYARKQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALR
                     DSWYDLNAHYTALGTRFWQFYPRMMAQASHKAL"
     gene            30442..31512
                     /gene="queA"
                     /locus_tag="OQQ75_000209"
     CDS             30442..31512
                     /gene="queA"
                     /locus_tag="OQQ75_000209"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HCS1974662.1"
                     /translation="MRVTDFFFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT
                     DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
                     PGAELLLGDDESINATMTARHGALFEVEFNDDRSVLDILNSIGHMPLPPYIDRPDEDA
                     DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD
                     TIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF
                     FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF
                     FSYGDAMFITYNPQAINERVGE"
     gene            31568..32695
                     /gene="tgt"
                     /locus_tag="OQQ75_000210"
     CDS             31568..32695
                     /gene="tgt"
                     /locus_tag="OQQ75_000210"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HCS1974663.1"
                     /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE
                     EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
                     KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
                     MSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVG
                     EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
                     LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
                     LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD"
     gene            32718..33050
                     /gene="yajC"
                     /locus_tag="OQQ75_000211"
     CDS             32718..33050
                     /gene="yajC"
                     /locus_tag="OQQ75_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HCS1974664.1"
                     /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK
                     RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL
                     PKGTMKAL"
     gene            33078..34925
                     /gene="secD"
                     /locus_tag="OQQ75_000212"
     CDS             33078..34925
                     /gene="secD"
                     /locus_tag="OQQ75_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HCS1974665.1"
                     /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA
                     ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA
                     LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
                     KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR
                     LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
                     ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
                     EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
                     INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
                     EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA
                     GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII
                     LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI"
     gene            34936..35907
                     /gene="secF"
                     /locus_tag="OQQ75_000213"
     CDS             34936..35907
                     /gene="secF"
                     /locus_tag="OQQ75_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HCS1974666.1"
                     /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR
                     GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE
                     GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLTQTGAMALMAALLSILVY
                     VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
                     DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT
                     MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
     gene            36036..36383
                     /locus_tag="OQQ75_000214"
     CDS             36036..36383
                     /locus_tag="OQQ75_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease family protein"
                     /protein_id="HCS1974667.1"
                     /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV
                     HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN
                     PFADLKAMMNKKK"
     gene            complement(36560..37444)
                     /gene="tsx"
                     /locus_tag="OQQ75_000215"
     CDS             complement(36560..37444)
                     /gene="tsx"
                     /locus_tag="OQQ75_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-specific channel-forming protein Tsx"
                     /protein_id="HCS1974668.1"
                     /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS
                     YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI
                     EPRFSIDKLTNTDLNFGPFKEWYFANNYIYDMGRNKNGRQSTWYMGLGTDIDTGLPMS
                     LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG
                     DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN
                     FNVRSTGWGGYLVVGYNF"
     gene            complement(37743..38282)
                     /locus_tag="OQQ75_000216"
     CDS             complement(37743..38282)
                     /locus_tag="OQQ75_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS1974669.1"
                     /translation="MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLN
                     QETVKITQQNRLNAKSSSGGYLLPGAKTPARLESQIGTLRMSLVNITPDTDGTTLTLR
                     IQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKG
                     ISVDQLGFVRIHDIQPVMQ"
     gene            38433..38882
                     /gene="nrdR"
                     /locus_tag="OQQ75_000217"
     CDS             38433..38882
                     /gene="nrdR"
                     /locus_tag="OQQ75_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HCS1974670.1"
                     /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA
                     ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGERE
                     VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED"
     gene            38886..39989
                     /gene="ribD"
                     /locus_tag="OQQ75_000218"
     CDS             38886..39989
                     /gene="ribD"
                     /locus_tag="OQQ75_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HCS1974671.1"
                     /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ
                     RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQD
                     PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR
                     TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL
                     YPQQNLRQPVRIVIDSQNRVTPEHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHK
                     GHLDLVVLMMQLGKQQINSIWGEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLC
                     TLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA"
     gene            40078..40548
                     /gene="ribE"
                     /locus_tag="OQQ75_000219"
     CDS             40078..40548
                     /gene="ribE"
                     /locus_tag="OQQ75_000219"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HCS1974672.1"
                     /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV
                     KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA
                     HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
     gene            40568..40987
                     /gene="nusB"
                     /locus_tag="OQQ75_000220"
     CDS             40568..40987
                     /gene="nusB"
                     /locus_tag="OQQ75_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HCS1974673.1"
                     /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
                     VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV
                     AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK"
     gene            41065..42042
                     /gene="thiL"
                     /locus_tag="OQQ75_000221"
     CDS             41065..42042
                     /gene="thiL"
                     /locus_tag="OQQ75_000221"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HCS1974674.1"
                     /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI
                     STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES
                     FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT
                     PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI
                     SDLGHIVKASDCGVRIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR
                     GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP"
     gene            42020..42538
                     /gene="pgpA"
                     /locus_tag="OQQ75_000222"
     CDS             42020..42538
                     /gene="pgpA"
                     /locus_tag="OQQ75_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HCS1974675.1"
                     /translation="MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLA
                     AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL
                     MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY
                     FIGHHWPLGILS"
     gene            complement(42592..43566)
                     /gene="yajO"
                     /locus_tag="OQQ75_000223"
     CDS             complement(42592..43566)
                     /gene="yajO"
                     /locus_tag="OQQ75_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414953.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxyxylulose-5-phosphate synthase YajO"
                     /protein_id="HCS1974676.1"
                     /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII
                     KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR
                     AQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH
                     ASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLFYQEGVAVIPWSPLARGR
                     LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK
                     PGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK"
     gene            complement(43621..45483)
                     /gene="dxs"
                     /locus_tag="OQQ75_000224"
     CDS             complement(43621..45483)
                     /gene="dxs"
                     /locus_tag="OQQ75_000224"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HCS1974677.1"
                     /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
                     RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
                     GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA
                     FEAMNHAGDIRPDMLVVLNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG
                     VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ
                     FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA
                     KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY
                     STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT
                     PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLAI
                     LNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG
                     SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA"
     gene            complement(45508..46407)
                     /gene="ispA"
                     /locus_tag="OQQ75_000225"
     CDS             complement(45508..46407)
                     /gene="ispA"
                     /locus_tag="OQQ75_000225"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HCS1974678.1"
                     /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG
                     KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
                     VKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL
                     DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA
                     FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ
                     LAEQSPDTSALEALADYIIQRNK"
     gene            complement(46407..46649)
                     /gene="xseB"
                     /locus_tag="OQQ75_000226"
     CDS             complement(46407..46649)
                     /gene="xseB"
                     /locus_tag="OQQ75_000226"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HCS1974679.1"
                     /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ
                     LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE"
     gene            46855..48303
                     /gene="thiI"
                     /locus_tag="OQQ75_000227"
     CDS             46855..48303
                     /gene="thiI"
                     /locus_tag="OQQ75_000227"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HCS1974680.1"
                     /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
                     RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQL
                     EGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPEVTVHLEVEDDRLL
                     LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI
                     GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVA
                     ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
                     DFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIALQTE
                     QEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNR
                     TWLLWCERGVMSRLQALYLREQGFNNVKVYRP"
     gene            complement(48357..48947)
                     /gene="yajL"
                     /locus_tag="OQQ75_000228"
     CDS             complement(48357..48947)
                     /gene="yajL"
                     /locus_tag="OQQ75_000228"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase YajL"
                     /protein_id="HCS1974681.1"
                     /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLA
                     ITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIV
                     AAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVKLLTSQGPGT
                     AIDFGLKIIDLQVGREKAHEVASQLVMAAGIYNYYE"
     gene            complement(48910..49821)
                     /gene="panE"
                     /locus_tag="OQQ75_000229"
     CDS             complement(48910..49821)
                     /gene="panE"
                     /locus_tag="OQQ75_000229"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HCS1974682.1"
                     /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSANLVET
                     DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT
                     IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL
                     PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE
                     GHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP
                     ENTRLFEMVKRKESEYERIGTGLPRPW"
     gene            49989..50480
                     /gene="yajQ"
                     /locus_tag="OQQ75_000230"
     CDS             49989..50480
                     /gene="yajQ"
                     /locus_tag="OQQ75_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414960.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide binding protein YajQ"
                     /protein_id="HCS1974683.1"
                     /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDA
                     SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI
                     ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN
                     FRD"
     gene            complement(50608..51972)
                     /locus_tag="OQQ75_000231"
     CDS             complement(50608..51972)
                     /locus_tag="OQQ75_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308508.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1974684.1"
                     /translation="MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
                     ASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIW
                     GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITH
                     KLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLN
                     FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRK
                     MKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAG
                     YKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPA
                     YVSSLRIEIPANIAANEALKVRLLETEGIKEVLIAEEEHSAYVKIDSKVTNRFDVEQA
                     IRQA"
     gene            complement(52121..53011)
                     /gene="cyoE"
                     /locus_tag="OQQ75_000232"
     CDS             complement(52121..53011)
                     /gene="cyoE"
                     /locus_tag="OQQ75_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HCS1974685.1"
                     /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV
                     GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLW
                     FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDS
                     GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV
                     ATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALS
                     VMMSVDFMVPDSHTLLAAVW"
     gene            complement(53023..53352)
                     /locus_tag="OQQ75_000233"
     CDS             complement(53023..53352)
                     /locus_tag="OQQ75_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HCS1974686.1"
                     /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA
                     VILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL
                     NYNMMMH"
     gene            complement(53352..53966)
                     /locus_tag="OQQ75_000234"
     CDS             complement(53352..53966)
                     /locus_tag="OQQ75_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HCS1974687.1"
                     /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF
                     ATYAVLVNGTASGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL
                     ALTCLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
                     MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM"
     gene            complement(53956..55947)
                     /gene="cyoB"
                     /locus_tag="OQQ75_000235"
     CDS             complement(53956..55947)
                     /gene="cyoB"
                     /locus_tag="OQQ75_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002444673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HCS1974688.1"
                     /translation="MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYL
                     WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI
                     FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL
                     GVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAP
                     GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI
                     NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH
                     FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFS
                     VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMIYWWPKAFGFKLNE
                     TWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALG
                     ILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWANSSPPPFYNFAVVPHVHERDAFWE
                     MKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT
                     WIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN"
     gene            complement(55969..56916)
                     /gene="cyoA"
                     /locus_tag="OQQ75_000236"
     CDS             complement(55969..56916)
                     /gene="cyoA"
                     /locus_tag="OQQ75_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit II"
                     /protein_id="HCS1974689.1"
                     /translation="MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLI
                     LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF
                     LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
                     VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM
                     KFKAIATPDRAEFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFAD
                     VINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH"
     gene            complement(57377..58852)
                     /gene="ampG"
                     /locus_tag="OQQ75_000237"
     CDS             complement(57377..58852)
                     /gene="ampG"
                     /locus_tag="OQQ75_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide MFS transporter AmpG"
                     /protein_id="HCS1974690.1"
                     /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI
                     DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE
                     PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG
                     GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF
                     FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA
                     LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT
                     SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA
                     VPGLILLLVCRQTLEYTRVNDNFISRTEYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA
                     LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT"
     gene            complement(58896..59474)
                     /locus_tag="OQQ75_000238"
     CDS             complement(58896..59474)
                     /locus_tag="OQQ75_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1974691.1"
                     /translation="MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVT
                     VSINGADQRTDQALAKVTRDNQIVTLAASRDLRFLLQEVLEKQMTARGYMVGPNGPVN
                     LQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKITKNYRASYNVEGAFQASNK
                     NIADAVNSVLTDTIADMSQDTSIHEFIKQNAR"
     gene            59779..60096
                     /gene="bolA"
                     /locus_tag="OQQ75_000239"
     CDS             59779..60096
                     /gene="bolA"
                     /locus_tag="OQQ75_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BolA"
                     /protein_id="HCS1974692.1"
                     /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLV
                     SDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAG
                     SIA"
     gene            60440..61738
                     /gene="tig"
                     /locus_tag="OQQ75_000240"
     CDS             60440..61738
                     /gene="tig"
                     /locus_tag="OQQ75_000240"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HCS1974693.1"
                     /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF
                     RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED
                     FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDSAVEA
                     EDRVTIDFTGSVDSEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP
                     EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER
                     ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR
                     ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK
                     ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA"
     gene            61983..62606
                     /gene="clpP"
                     /locus_tag="OQQ75_000241"
     CDS             61983..62606
                     /gene="clpP"
                     /locus_tag="OQQ75_000241"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006809880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HCS1974694.1"
                     /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF
                     LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS
                     TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
                     GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN"
     gene            62732..64006
                     /gene="clpX"
                     /locus_tag="OQQ75_000242"
     CDS             62732..64006
                     /gene="clpX"
                     /locus_tag="OQQ75_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HCS1974695.1"
                     /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC
                     NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG
                     DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA
                     KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT
                     KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED
                     VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE"
     gene            64194..66548
                     /gene="lon"
                     /locus_tag="OQQ75_000243"
     CDS             64194..66548
                     /gene="lon"
                     /locus_tag="OQQ75_000243"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HCS1974696.1"
                     /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM
                     DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA
                     LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID
                     DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK
                     KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ
                     KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI
                     LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR
                     GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV
                     AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP
                     KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK
                     HIEINGDNLHDYLGVQRFDYGRADNENCVGQVTGLAWTEVGGDLLTIETACVPGKGKL
                     TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI
                     AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN
                     KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK"
     gene            66757..67029
                     /gene="hupB"
                     /locus_tag="OQQ75_000244"
     CDS             66757..67029
                     /gene="hupB"
                     /locus_tag="OQQ75_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-beta"
                     /protein_id="HCS1974697.1"
                     /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL
                     VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN"
     gene            67221..69092
                     /gene="ppiD"
                     /locus_tag="OQQ75_000245"
     CDS             67221..69092
                     /gene="ppiD"
                     /locus_tag="OQQ75_000245"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1974698.1"
                     /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK
                     VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD
                     QYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQL
                     TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY
                     EQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQT
                     KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE
                     KGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS
                     DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPG
                     INSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV
                     DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN
                     VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ"
     gene            69243..69614
                     /locus_tag="OQQ75_000246"
     CDS             69243..69614
                     /locus_tag="OQQ75_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HCS1974699.1"
                     /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA
                     QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED
                     LKQVPGMGNSLVERNLAVLTL"
     gene            69708..70106
                     /gene="fadM"
                     /locus_tag="OQQ75_000247"
     CDS             69708..70106
                     /gene="fadM"
                     /locus_tag="OQQ75_000247"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain acyl-CoA thioesterase FadM"
                     /protein_id="HCS1974700.1"
                     /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM
                     TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADA
                     LITFVCIDLKTQKALALEGELREKLEQMVK"
     gene            complement(70158..70853)
                     /gene="queC"
                     /locus_tag="OQQ75_000248"
     CDS             complement(70158..70853)
                     /gene="queC"
                     /locus_tag="OQQ75_000248"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HCS1974701.1"
                     /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID
                     VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL
                     FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPL
                     MWIDKAETWALADYYGKLDLVRNETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKP
                     TVMAAMKQKTGLR"
     gene            complement(70918..72619)
                     /locus_tag="OQQ75_000249"
                     /pseudo
     CDS             complement(70918..72619)
                     /locus_tag="OQQ75_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308526.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
     gene            72719..73501
                     /gene="cof"
                     /locus_tag="OQQ75_000250"
     CDS             72719..73501
                     /gene="cof"
                     /locus_tag="OQQ75_000250"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HMP-PP phosphatase"
                     /protein_id="HCS1974702.1"
                     /translation="MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGR
                     HALEMQHILGALSLDAYLITGNGTLVHSLEGELLHRDDLPADVAELVLYQQWDTRASM
                     HIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQI
                     QLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDRE
                     MLGSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTH"
     gene            73690..74148
                     /gene="decR"
                     /locus_tag="OQQ75_000251"
     CDS             73690..74148
                     /gene="decR"
                     /locus_tag="OQQ75_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DecR"
                     /protein_id="HCS1974703.1"
                     /translation="MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLED
                     DGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE
                     YDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE"
     gene            74178..75794
                     /locus_tag="OQQ75_000252"
                     /pseudo
     CDS             74178..75794
                     /locus_tag="OQQ75_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308529.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SmdA family multidrug ABC transporter
                     permease/ATP-binding protein"
BASE COUNT        18553 a        18844 c        20239 g        18380 t
ORIGIN      
        1 acgtagatca agactggtcc gcgaacgtgg gtgttaaata tacttggtaa tattcttcac
       61 tccgaagaaa ttctggtaat ttaatctaaa taatgcccgt caaggatttg acgggcatta
      121 ctgcaaagga cgcgcaaatg ttatctgtag ttaaacctct tcaggaattt ggtaagctcg
      181 ataaatgttt gtccagatac ggtacgcgct tcgagtttaa taatgaaaag caagttatat
      241 tttccagtga tgtcaatagc gaagatactt tctttatttt agagggcgtt atctctctgc
      301 gtagagaaga aaacgtactt atcggtatta cccaggcttc ttatattatg gggctggctg
      361 atggtttaat gaaaaacgat ataccataca aattaatatc agaaggaaat tgtacgggat
      421 atcatctacc agccaaacaa accattacgc ttattgaaca aaatcaactc tggcgagacg
      481 ctttttactg gttagcctgg caaaatagaa ttctggaatt acgcgacgtg cagctcattg
      541 ggcataattc ctacgaacaa atccgcgcaa cattattatc aatgattgac tggaatgaag
      601 aattgcgatc acgtattggt gtgatgaatt atatccatca acgtacacgc atatcgcgtt
      661 ctgtcgtcgc agaagttctc gctgctttgc gtaaaggcgg ctatatcgaa atgaataaag
      721 gcaaactggt cgctatcaac tgtttgcctt cagagtatta atcaggatgc agggataacc
      781 aacggtttat tcccgcttag ctcggtcacc agatcattga tgccatcgct catattttta
      841 aagcgcgtca acggcgaacg agtgaccacc acaaacgcgc caatattctt ctgcgggatc
      901 atcgccatat aggtaatgaa accgccacca ccgcctgtct tctgaataat ccccggacga
      961 ccctctttcg gggccatata tacccagcct aaaccaagcg catccgcttt gccggggaca
     1021 tccatgccaa tcactttggt aaactgcgcg cgctgataaa tcaacgtctg catgcgatct
     1081 gcctggttac tgcgctgata aaaatcagat gataaatact gctgcatcca gcgcatcata
     1141 tcgccaggcg tggaatagac gccgccgctg ccaattgccg ccagcgtgtt attgcacgga
     1201 ctggcaccgc gctcagcaac cattaagcgg cggcactgat ccggtgaggg ggtgtaggtg
     1261 gtgtctttca tccccaatgg acgggtaatc tgctcttcaa acaactgggt ataaggcttg
     1321 ccggacgcat tcgccagtgc atctgccagc aggtcgaacg caaggttaga gtacgccgcc
     1381 tgactgcctg gcgcggcttt cagcttcgcc gtagaaaggt atttccagcg ttgctcgcgc
     1441 gttggccaga caaacaccgg acgatgtgcc gcgccaccgg gctgttcacg gggcagggcg
     1501 ctggtatggg ttgccagatt cactagggta atgggcgtcc cattgtaggt tggcacgcgt
     1561 gcgcctggcg gagcatattt acttagcgga tcgtttaact tcacggtccc ctggtcgagc
     1621 aatttcacca gcatttcact ggtcattagc ttggtgaggg aagcaatacg cacgaccgaa
     1681 tccagctgcg ggcgaacgtt attaccaggt cgcgtttcgc cataactgcg aaagacgcgc
     1741 tggttaccgt cgataacaac cagcgccatc cccgtggcac cgctgccgta aaaaatatga
     1801 tcggcataac gatcgacaat atcagaggca aactccggtt cagtgatcgg ctgcgccgca
     1861 tggacggagg tcaatgacgc cgcacacagc acggcagaaa aaagcagact acgtttcaac
     1921 ggtggtgtcc atagattgaa tgaaggtaac tgagcgtatt tatactactc attgatggat
     1981 tgcaaagggc gaattagtgc aataatagtg ttaaaaacgt aacggcgcgt aaacacgatc
     2041 tttttcctgc tcaccaatgc ctgcatttgt gatcctgcgc gtgttaatcc gcttatgtaa
     2101 acaatctttg gtttgtgaaa tccgtcgaaa caattcttat ggtcaggctg gcgaactaag
     2161 cgccttgcta tgggtcacaa tgggcggttt catttggctg acgctttgta gtggtcatgc
     2221 ggttaataca cagcagttgt taaaacgata agaagttagc aggagtgcat atgtttaagt
     2281 cttttttccc aaagccggga gcgttttttc tctcggcctt tgtttgggca ttgattgccg
     2341 ttatcttctg gcaagccggt gggggagact gggtggcgcg tatcaccggc gcttccgggc
     2401 agatcccgat tagcgccgcg cgtttctggt cgttggattt cctgattttt tacgcttact
     2461 acattgtttg cgtaggactt tttgcatttt tctggtttat ctacagcccg caccgttggc
     2521 aatactggtc aatactcggt actgcactga tcatcttcgt cacctggttt ttggtggaag
     2581 tcggagtcgc cgtcaacgcc tggtatgcac cgttctatga tctgattcaa accgcgctaa
     2641 gttcgccgca taaagtcact atcgaacaat tttaccgcga agtgggcgtc tttctgggga
     2701 ttgcgctgat cgcggtggtg atcagtgtac tgaacaactt ctttgtcagt cactatgtgt
     2761 tccgctggcg tacggcgatg aacgaatatt acatggcgaa ctggcaacaa ctgcgtcata
     2821 tcgaaggtgc cgcacagcgt gtgcaggaag acaccatgcg ttttgcttca acgctggaga
     2881 atatgggcgt cagttttatc aacgccatca tgacgttggt cgccttcctg ccggtgctgg
     2941 taacgctctc cgcgcatgtg ccggagctgc cgattatcgg gcacattccg tatggtctgg
     3001 tgattgccgc tatcgtctgg tcgctgatgg ggaccggatt gctggcagtg gtagggatca
     3061 aactgccggg gctggagttt aaaaaccagc gagtagaggc cgcctaccgt aaagagctgg
     3121 tttatggtga agacgatgcc acgcgcgcga cgccgcctac ggtacgcgag ctgtttagcg
     3181 ccgtacggaa aaactatttt cgcctctatt ttcactatat gtatttcaac atcgcccgca
     3241 ttctctattt gcaggtcgat aacgttttcg gtttgttctt gctgtttccg tcaattgttg
     3301 ccggtacgat tacgctcggc ctgatgacgc agattaccaa cgtttttggt caggttcgcg
     3361 gtgctttcca gtacctgatt aactcatgga ccacactggt tgagttgatg tctatctaca
     3421 aacgtctgcg cagctttgaa catgagctgg atggtgacaa aattcaggaa gtaacccata
     3481 ccttgagcta aaaaggagaa gtaatgtcgc gcgtcaatca tctatcttcg ctgtcattgt
     3541 tggcggttct ggttttagcg gggtgtagta gtcaggctcc gcaaccgttg aaaaagggcg
     3601 aaaaagcgat agatgtagcg agcgtcgtgc ggcagaagat gcctgcgagc gtgaaagacc
     3661 gcgatgcctg ggcgaaagat ctcgccacca cctttgaaag tcaggggctg gcaccgacgc
     3721 tggaaaacgt ctgctcggtg ctggcggtgg cgcagcagga gtcaaattat caggcagatc
     3781 cggccgttcc gggcttaagc aagatcgcct ggcaagagat tgaccgtcgt gctgaacgga
     3841 tgcacattcc tgcttttctg gttcataccg cgctaaaaat caaatcgcca aacggcaaaa
     3901 gttatagcga acggttagat tcggtgcgta cagaaaagca attgagcgcg atttttgacg
     3961 atctgatcag catggtacca atggggcaga cgctgtttgg ttcgcttaat ccggtgcgca
     4021 ccggtgggcc gatgcaggtc agcattgctt ttgccgaaca gcataccaaa gggtatccgt
     4081 ggaaaatgga cggtacagtt cgtcaggaag tcttcagtcg ccgcggcggg ttgtggtttg
     4141 gtacttacca tttactgaat tatcccgcca gctatagcgc accgatatac cgctttgctg
     4201 attttaacgc tggctggtac gccagccgta atgccgcgtt tcagaacgcg gtcagtaagg
     4261 ccagcggcgt gaagctggca ctggacggtg atttaattcg ttacgacagt aaagaacccg
     4321 ggaaaaccga actggcaacg cgcaaactgg cgggaaaact ggggatgagc gacagcgaaa
     4381 ttcgccgtca gttagagaaa ggtgacagct tctcttttga ggagacggcg ctgtacaaga
     4441 aagtttatca acttgccgaa gcgaaaacgg gtaaatcact accccgcgaa atgttgcctg
     4501 gcattcaact ggaaagcccg aaaatcaccc gcaacctgac tacggcctgg tttgcgaagc
     4561 gcgtagacga acggcgggcg cgttgtatga aacagtgatc aaacaggaat gtcatgccag
     4621 ataaggcgtt ttaggccgta tctggcaacg taaatcttac tggcggcgat gtcgccagtg
     4681 cagccatagc gccaccactg caaaaatgag gcagcctact aaaaacggga tcagcccgaa
     4741 aatggtgccg acacctaaac caatttccac ccgtgggcga cctgtttcct ggacctgcat
     4801 taaacgctca tagacgccgg gcgcatgcac taacaggttc agcaattgcg ccccagccca
     4861 aaagcaaaac agcacaaaca acgcataggc aatgttgcca ggcgttgaag aggcattgcg
     4921 atattttccg ctaaacagcg attttgacag ggtgaaatca gccataaaaa cctccggaag
     4981 tcatctgctt ctcttctggt gtgataccag cggcttatgg caagtctgac aggtcattta
     5041 gattgtcaat atcagaatca tggtaaattg atgttgggaa tattcccgaa gcgtgaatct
     5101 tcgttgtgag tcacaaaatg gcaaccttaa gttaaattta ttaacaatta cgaaaatgtt
     5161 gtctacacca cagacggttg ttacagaata tgcaaggatg ttgtttttcg ttaacggagc
     5221 tgccatgaat ctgcctgtaa aaatccgccg tgactggcac tactatgcgt tcgccattgg
     5281 ccttatattc attcttaatg gcgtggtggg gttactggga tttgaagcaa aaggttggca
     5341 gacctatgcc gtcggtctgg tgacgtgggt gattagtttc tggctggcgg ggttgattat
     5401 tcgtcgtcgc gatgaagaaa ctgaaaacgc ccaataagaa tattatcggg cgttaaaata
     5461 ttacattgtg gttttcaatg cgttatccgc agcgtgacgc tccagcgcca gctcaatcaa
     5521 acgtgtgatc agatcggtgt aacccagacc gctggcttgc cacagcttcg gatacatact
     5581 gatgttggtg aagccaggca gtgtgttgat ctcgttgatc accacttcgt tctctggggt
     5641 taaaaacacg tctacacgcg ccatgcctgc gcatcccaac gtttgataag cctgaacggc
     5701 aatcgcccgg atcttatcgt tgatttctgg cgcaatggct gccggaacta ccactttcgc
     5761 gccatcttcg tcaatgtact tggtgtcgta ggcatagaag tcgctggtga gtacgatctc
     5821 gccacaggtg ctggcttgcg ggttgtcgtt gcccagaact gcgcattcga tctcacgacc
     5881 tttgatccct tgctcaacga tcactttatg atcgaattcg aacgccagat cgacggcaat
     5941 tgcgtactgt tcttcactgg ttactttgct gacaccaaca gaagagccct gattagccgg
     6001 ttttacaaac agtggtaacc tcagtttaga ctccacttcg gcaaaactaa tgttgtgacg
     6061 attggcgcgc gtcagggtaa taaatggcgc aatgttcagc ccggcatcgc gcagcagacg
     6121 tttggtaaca tctttatcca tacaggctgc tgaagccaga acatcagaac ctacaaacgg
     6181 taaattggcg acccgcagca ttccctgcaa ggaaccatct tcgcccagcg taccgtggac
     6241 aatcgggaaa atgacatcca ccgtcggtaa cggctgaccg ttttgcgcgt cgataagctg
     6301 atgctcatgt ttacttggca cctgcgcaag gctagtcgcc gaagggcgca acgcaatatg
     6361 ggcaggatcg tctgcattta gcagataatt gctggcatcg ctgacgtgcc attgcccttg
     6421 tttatcaatg cccagcagca caacgtcgaa gcgactttta tcaatggcat cgacaatgtt
     6481 ttttgccgat tgcagagaca cttcatgttc cgctgattta ccaccaaaaa cgattcctac
     6541 ccgcagtttt tccatcttaa aaacctatcc cgtctaacac aaagtgcata cattaccacg
     6601 acaaaacggg ggattcgcgg ccttctgaca gaatgttgca atcttctgct gacaaagcgt
     6661 gcaacgtaat ggtgaagaaa gtgcgttatt acaaagatgt gcgcgagatc acaaaaatga
     6721 tgaacgggaa gctaatttat tcctggctta aatggccatg cggtgagttt tttctcttag
     6781 ttgtaagtaa acgcagagaa tatatttcat aacttttgtt tataataaag gttgataatt
     6841 aaaggcctgt tctttgtgtg gttaattatt taaatatgag aaacgtttcg ctggtaatca
     6901 aacaaagaac atttgcgcaa agtatttcct ttgtcataaa aataatactt ccagacacta
     6961 tgaagttgtg aaacataatg ttaacttctc catacgttgg ataaggaaat acagacatga
     7021 aaaatctcat tgctgagttg ttattaaagc ttgcccaaaa agaagaagag tcgaaagaac
     7081 tgtgcgcgca ggtagaagct ttggagatta tcgtcactgc aatgcttcgc aatatggcac
     7141 aaaatgacca acagcgcttg attgaacagg tggagggggc tctttacgag gtaaagcctg
     7201 atgccagcat tcctgacgac gatacggagc tgctgcgcaa ttatgtaaag aagttattga
     7261 agcatcctcg tcagtaaaaa gttaatcttt tcaacagctg tcataaagtt gtcacggccg
     7321 agacttatag tcgctttgtt tttatttttt aatgtatttg tacatggaga aaataaagtg
     7381 aaacaaagca ctattgcact ggcactctta ccgttactgt ttacccctgt gacaaaagcc
     7441 cggacaccag aaatgcctgt tctggaaaac cgggctgctc agggcgatat tactgcaccc
     7501 ggcggtgctc gccgtttaac gggtgatcag actgccgctc tgcgtgattc tcttagcgat
     7561 aaacctgcaa aaaatattat tttgctgatt ggcgatggga tgggggattc ggaaattaca
     7621 gccgcacgta attatgccga aggtgcgggc ggctttttta aaggtatcga tgccttaccg
     7681 cttaccgggc aatacactca ctatgcgctg aataaaaaaa ccggcaaacc ggactacgtc
     7741 accgattcgg ctgcatcagc aaccgcctgg tcaaccggtg tcaaaaccta taacggcgcg
     7801 ctgggcgtcg atattcacga aaaagatcac ccaacgattc tggaaatggc aaaagccgca
     7861 ggtctggcga ccggtaacgt ttctaccgca gagttgcagg atgccacgcc cgctgcgctg
     7921 gtggcacatg tgacttcgcg caaatgctac ggtccgagcg cgaccagtga aaaatgtccg
     7981 ggtaacgctc tggaaaaagg cggaaaagga tcgattaccg aacagctgct taatgctcgt
     8041 gccgacgtta cgcttggcgg tggcgcaaaa acctttgctg aaacggcaac cgccggtgaa
     8101 tggcagggaa aaacgctgcg tgaacaggca caggcgcgtg gttatcagtt ggtcagcgat
     8161 gccgcctcgc taaatgcggt gacggaagcg aatcagcaaa aacctctgct tggactgttt
     8221 gctgacggca atatgccagt gcgctggcta ggaccgaaag caacgtacca cggcaatatc
     8281 gataagcccg cagtcacctg tacgcttaat ccgcaacgta atgacagtgt accaaccctg
     8341 gcgcagatga ccgacaaagc cattgaattg ttgagtaaaa atgagaaagg atttttcctg
     8401 caagttgaag gtgcgtcaat cgataaacag gatcacgctg cgaatccttg tgggcaaatt
     8461 ggcgagacgg tcgatctcga tgaagccgta caacgggcgc tggaattcgc taaaaaggat
     8521 ggcaacacgc tggtcatagt caccgctgat cacgcccacg ccagccagat tgtcgcgccg
     8581 gataccaaag ctccgggcct cacccaggcg ctaaatacca aagatggcgc agtgatggtg
     8641 atgagctacg ggaactccga agaggattca caagaacata ccggcagtca gttgcgtatt
     8701 gcggcgtatg gcccgcatgc cgccaatgtc gttggactga ccgaccagac cgatctcttc
     8761 tacaccatga aagccgccct ggggctgaaa taaaaccgcg cccggcagtg aattttcgct
     8821 gccgggtggt ttttttgctg ttagcaacca gacttaatgg caaatctcgg gcgcatacgc
     8881 tcatggttaa aacatgaaga gggatggtgc tatgaaaatt acattactgg ttaccttgct
     8941 tttcggtctg gtttttttaa ccacagtcgg cgctgccgag agaacgttaa ccccacaaca
     9001 acagcgtatg acctcctgta atcagcaggc gacggcgcag gcgttgaaag gggatgctcg
     9061 taagacctac atgagtgatt gcctgaagaa cagcaagtct gcgcctggtg aaaaaagttt
     9121 gacgccacag cagcaaaaga tgcgcgaatg taataatcaa gcaacgcaac aatctctgaa
     9181 aggtgatgat cgtaataagt ttatgagtgc ctgcctcaag aaagccgcct gatacctgat
     9241 agtgctaacg ggtgagctac gaaagtggct cacccgaaat ttcatacttc tgcctttagc
     9301 cccgtctcta taatttggga aaattgtttc tgaatgttcc caaaaataat gaatgatgaa
     9361 aactttttca aaaaagcggc ggcgcatggg gaggaacctc ctttaactcc tcaaaacgaa
     9421 catcagcggt ccgggctgcg cttcgcccgt cgcgtcagac taccccgtgc ggttggcctg
     9481 gctggcatgt tcttaccgat tgcttcaacg ctggtttcgc acccgccgcc gggctggtgg
     9541 tggctagtgt tggtcggctg ggcgttcgtc tggccgcatt tagcctggca gatagcgagc
     9601 agggccgtcg atccgcttag ccgggaaatt tacaacttaa aaaccgatgc agtattagcg
     9661 ggaatgtggg taggcgtaat gggcgtaaac gtgctgcctt ccaccgctat gttgatgatt
     9721 atgtgtctga atttgatggg ggcaggcggc ccccgtctgt ttgtcgcggg tctggtgttg
     9781 atggtggttt cctgccttgt caccctcgag cttacgggca ttaccgtgtc gttcaatagt
     9841 gcgccgctgg aatggtggct ctcccttccc attattgtcg tttatcctct gctgtttggc
     9901 tgggtcagct accagacggc aaccaaactg gcggaacata aacgcaggtt gcaggtcatg
     9961 agtacccgcg acggcatgac gggcgtgtat aaccgacgtc attgggaaac tatgttacgc
    10021 aatgaatttg ataactgtcg gcggcataat cgcgatgcaa cgttactgat tatcgatatc
    10081 gaccatttca agagcatcaa cgatacctgg ggtcatgatg tgggcgatga agcgattgtg
    10141 gcgcttaccc gacagttaca aattaccctg cgcggtagcg atgtgattgg tcggtttggc
    10201 ggcgatgagt ttgcagtaat catgtccggt acgccagctg agagcgccat taccgccatg
    10261 ttacgggtgc gtgaagggct aaacacgtta cgcttgccga atacgccaca ggtaacttta
    10321 cggattagtg tgggggttgc gccgctgaac ccacaaatga gtcactatcg tgagtggttg
    10381 aaatcggcag atttggcgct ttacaaagca aagaaagccg gacgtaaccg caccgaagtg
    10441 gcggcctgac gtcaggcgaa agtcatcagg atttgctgag tttttctgat ttttccatac
    10501 acttcgtcat cgcttcgatc actgcggcac ggaagccttt ctcttccagt acgcgtaccg
    10561 cttcaatggt ggtgcctccc ggtgagcaga ccatatcttt cagtgccccc ggatgttctc
    10621 ccgtttccag caccattttt gcggaaccca ttaccgcctg agcggcaaat ttatacgcct
    10681 gggcgcgtgg catcccgccc agcacggcgg cgtcggccat cgcttcgata aacataaata
    10741 cgtaggctgg cgaagaaccg ctcacaccga ctaccgggtg gatcatcggc tcagcaatta
    10801 cttccgcttc gccaaagcag cggaaaatat tcagcacatc agcggtatct tctggggtta
    10861 ccagcgcgtt tggcgttacg gaggtcatcc cggcattaac cagcgcggga gtgttcggca
    10921 tggcgcggat aattttccgg tcatggccca gcgcgcgggc aagctggtcg agcgtgacac
    10981 ctgcagcaat agaaacgacc agagagtctt tattcaggct ggaggtgatt tcgctaagca
    11041 ctttaatcat gatgccaggt ttaacggcag caaaaatgat gtcggcgatt tgcgccactt
    11101 cttgcgccga ttctgcggcg ttgatgccga actggtcatg cagggcggcg actttattcg
    11161 gggagggggt gtatacccag atttgccctg gaagcacctg accgctggca atcagaccgc
    11221 cgagaatggc ttttcccata ttgccgcagc caataaaacc gattttcttt tccattgcct
    11281 cactcctgcc gtgaaattca ttgttttgat aatcgctggc agaagcataa acagaactat
    11341 gccggaaggc aaaagcgcga cacaatagag gattacccaa caaaggatga ctttatgaca
    11401 atttgggtgg atgctgacgc gtgtcccaat gtaattaaag agattttgta tcgcgcggcg
    11461 gaacgtatgc agatgccgct ggtactggta gcaaaccaga gtttacgcgt gccgccatcg
    11521 cgatttattc gtacgctgcg cgtcgcggca ggtttcgacg ttgccgataa cgaaattgtc
    11581 cggcagtgtg aagcgggcga tttggtgatc accgcagata tacctttggc tgctgaagcc
    11641 atcgagaaag gcgcagcggc gcttaatccg cgcggcgaac gttacacgcc agcgaccatt
    11701 cgtgagcgcc tgacgatgcg cgattttatg gataccttac gtgccagtgg gatccagacc
    11761 ggcggaccag atagcctttc acaacgtgac cgccaggcct ttgccgcgga gctggagaag
    11821 tggtggctgg aagtgcaacg tagtcgtggc taaatgtaat ttattattta cacttcattc
    11881 ttgaatattt attggtatag taagggatgt attgagattt tcactttaag tggaattttt
    11941 tctttacaat cgaaattgta ctagtttgat ggaatgatcg ctattctcat gacaccggct
    12001 ttcgccgcat tgcgacctat tggggaaaac ccacgatgac acaacctctt tttctgatcg
    12061 ggcctcgggg ctgtggtaaa acaacggtcg gaatggccct tgccgattcg cttaaccgtc
    12121 ggtttgtcga taccgatcag tggttgcaat cacagctcaa tatgacggtc gcggagatcg
    12181 tcgaaaggga agagtgggcg ggatttcgcg ccagagaaac ggcggcgctg gaagcggtaa
    12241 ctgcgccatc cacagttatc gctacaggcg gcggcattat tctgacggaa tttaatcgtc
    12301 acttcatgca aaataacggg atcgtggttt atttgtgtgc gccagtatca gtcctggtta
    12361 accgactgca agctgcaccg gaagaagatt tacggccaac cttaacggga aaaccgctga
    12421 gcgaagaagt tcaggaagtg ctggaagaac gcgatgcgct atatcgcgaa gttgcgcata
    12481 ttatcatcga cgcaacaaac gaacccagcc aggtgatttc tgaaattcgt agcgccctgg
    12541 cacagacgat caattgttga ttttagagcg cctatactta acgttcattc cgtgaaataa
    12601 ggaagaacga tgccaacgaa accgccttat cctcgtgaag catatatagt gacgattgaa
    12661 aaaggaaagc caggacagac ggtaacctgg taccaactca gagccgatca tcctaaacca
    12721 gactcgttga tcagtgaaca tccgaccgct caggaagcga tggatgcgaa aaaacgctat
    12781 gaggaccctg acaaagagtg accgcatcag actgctcgga agggattctg agtgccacta
    12841 caagggatct gcgtcacatt tttcataatt catgtttttc taataattag aatattaaac
    12901 aataacaatc cattactgga atcatttgga atctttacat tatgccgtgc acgtctgctg
    12961 ctacgctttt tgtcatttgt agcacaagta agtgtcagca gtggtgcttc acacttgccc
    13021 ggtaattaac gacgaaagaa aagtaaggtg gatgaacaat gagtgcgtcg ttggcgatcc
    13081 tgaccatcgg cattgtacct atgcaggagg ttttgccgct cctgacggaa tacattgacg
    13141 aagataatat ttcccatcat agcctgctgg ggaagttaag tcgtgaagaa gtgatggcgg
    13201 agtacgcgcc agaagcaggc gaagacacca ttctcacatt attaaatgac aaccagctgg
    13261 cccatgtttc gcgtcgtaaa gtggagcgag acctgcaagg tgtggttgaa gtgctcgata
    13321 atcagggtta tgacgtcatt ttattaatga gtacagcaaa cattagtagt atgactgcgc
    13381 gtaatacgat ctttcttgag ccgtcgcgaa tattgcctcc actggtttcc tctattgttg
    13441 aagatcatca ggtgggggtt atcgttccgg ttgaggagat gctgcccgtt caggcgcaaa
    13501 aatggcaaat tttgcagaaa tcgccggtat tttcattggg taaccccatt catgattcag
    13561 aacaaaaaat cattgatgca gggaaagaat tactggcaaa aggggctgat gtcatcatgc
    13621 tggattgttt aggatttcac caacgtcatc gcgatttact gcaaaaacag ctcgatgttc
    13681 ctgtcttgct gtctaacgta ttgattgcac ggctggctgc ggaattactg gtgtaatttt
    13741 gcgtgacagc cagcgcctct ggcccctata gtgaagtaga tgttcaacta ccagacaggg
    13801 ccagtttatg cttcaaagta atgagtactt ttccggcaaa gtgaaatcaa tcggcttttc
    13861 cagcagcagc actggtcgcg ccagcgtggg tgttatggtt gaaggcgaat acaccttcag
    13921 caccgctgag ccggaagaga tgacggtaat cagtggcgcg ctgaatgtgt tactgcctga
    13981 tgcgaccgac tggcaggtgt atgaagccgg ttcggtgttt aatgttcccg gtcacagtga
    14041 gtttcatctg caagttgccg aacccacctc ttatctgtgc cgctatctgt aattcctcgc
    14101 cttccccttg aacgggaggg catttttctg aaatatcctc tctttaaccc ataataatat
    14161 ttcctttgct gcgatttttt caatttccga tatattcata attcatcaag gttgatataa
    14221 atatcagtga agatctccag atattgttgc ggaactggct acgataaaag ataaatcaga
    14281 tgatgaatgg tggcgtgcat tgctgcaaag tcgcaatgat catttgcgcc aaacggcatt
    14341 acgcaacgca cataccccgg cgtcgttgtt aacgacattg accgagtctc ggcatcggtc
    14401 gctagctatg aataatccac agctcgctgc cgatgtgaaa acgacgtggt taaaagagga
    14461 tccatcatta ctcttatttg tcgaacaacc cgatctttcg ctgttacggg atttagtgaa
    14521 aaccggggca atgcggaaaa ttcgcagtga agcgcgtcac tggcttgagg aaaaacaatg
    14581 acacaacgtc catggagcaa gttacagcat aaaacgcata atattgctgc gctaaaaatt
    14641 attgtccgcc gtagcgaata attatatccc tggtgtggct tcgtacgccg gataagacgc
    14701 ggcaggcgtc gcatccggca ttaaaggaaa atcagcaatt aacgttgtgc ttcgccacct
    14761 aatccttcaa tcaggttttg aattaacgct gccagttcac cagtcatcag gatgaaatcg
    14821 gcatcaaaac gctgggcgaa atcttcacgg tcgatatctt cgttttgatc gcgcagctcg
    14881 tcgcaaaact tcagacgctt gagcgaacca tcgtcgcaca tcacaaactg aatgcgctgc
    14941 tgccagtcga gcgccagttt agtcaccact tttccggctt cgatgtgatt ggtgatctct
    15001 tcgctggtca gatcttgttt cttcgcgcgg atcacgccgc catcttccag caacgatttc
    15061 agctcggctt catcaagcag ctggaagccc tgtgccgcgc taccggagcg aacccattcg
    15121 gtcagcgtca gttcaatcgg gttttccatg ctcaatggta ccacaggtaa cgaccccagg
    15181 cttttacgca gcagtgccag cgtatcttcc gcttttttgg cactggcgca gtccaccata
    15241 atcaaaccgt taaccgtgtc gatccacatc attgtctggc taaaacggct gaaagcacgc
    15301 ggcaacagag agtgcagcac ttcgtctttc agcgaatctt tttcggtttt cttcagctta
    15361 cgcgcctgtt ccgcttccag tttggcgatt ttcgcttcca gcgcctgctt aatcaccgga
    15421 gacgggagga ttttttcttc tttgcgcgcg cagataacaa tttgaccatt ggcaacgtgc
    15481 gttaacgcat cgctgtgcga tcccatcgga ggaacccagc ccatcttcgc catgtcctgg
    15541 ctgccgcatg gggtaaatgc catcgaggct agctgttttt ccatctcttc tgcacgcagc
    15601 gaaatctcgc ggctaagacg gtaaaccatt aaatttttga accacagcat gataatttcc
    15661 acggccttgt tgttaaattt agcgggcatg ataacgaatt gtcggcggcc ttgcattgcc
    15721 aatccggttg tccgtctcta cgctattgat attgaaaaaa ataaggagag taccgtgcgt
    15781 ataggtatcg atttaggcgg caccaaaact gaagtgattg cactgggcga tgcaggggag
    15841 cagttgtacc gccatcgtct gcccacgccg cgtgatgatt accggcagac tattgaaacg
    15901 atcgccacgt tggttgatat ggcggagcag gcgacggggc agcgcggaac ggtaggtatg
    15961 ggcattcctg gctcaatttc gccttacacc ggtgtggtga agaatgccaa ttcaacctgg
    16021 ctcaacggtc agccattcga taaagactta agcgcgaggt tgcagcggga agtgcggctg
    16081 gcaaatgacg ctaactgtct ggcggtttca gaagcagtag atggcgcggc agcgggagcg
    16141 cagacggtat ttgccgtgat tatcggcacg ggatgcggcg cgggcgtggc attcaatggg
    16201 cgggcgcata tcagcggcaa tggcacggca ggtgagtggg gacacaatcc gctaccgtgg
    16261 atggacgaag acgaactgcg ttatcgcgag gaagtccctt gttattgcgg taaacaaggt
    16321 tgtattgaaa cctttatttc gggcacggga ttcgcgatgg attatcgtcg tttgagcgga
    16381 catgcgctga aaggcagtga aattatccgc ctggttgaag aaagcgatcc ggtagcggaa
    16441 ctggcattgc gtcgctacga gctgcggctg gcaaaatcgc tggcacatgt cgtgaatatt
    16501 ctcgatccgg atgtgattgt cctggggggg gggatgagca atgtagaccg tttatatcaa
    16561 acggttccgc agttgattaa acaatttgtc ttcggcggcg aatgtgaaac gccggtgcgt
    16621 aaggcgaagc acggtgattc cagcggcgta cgcggcgctg cgtggttatg gccacaagag
    16681 taaaaaacgt aggcaattgg cgcatcatgc ctgatgcgac gcttgccgcg tcttatcagg
    16741 cctgcaaaat gtgccagaac cgcgtagggc ggataaggcg ttcacgccgc atccggcaat
    16801 aagtaatgaa caccgagact ataacctacc ccagtggttt cgccagcacc ggagtatccg
    16861 ccgcttgctg gcgcttatag cgaccataca gcagcaacga cgacatcgca gcaaacgaaa
    16921 gcagggcggc aggcagcgcc acgtaattat atgccagccc cagcgtcagc atcataccac
    16981 cgcaatatgc gccgacggcg ctaccgaggt taaacgctat ttgcccacct gcggcaccta
    17041 ataactctcc gcctttggcg ttttgtagta acaatatttg tagcggtgct gaaagggcaa
    17101 ataatcccgc gcaacaaata aaagcaaaaa taagcgacgt tgttttcatg ccgccgcaga
    17161 aaaagaacat cagcagtgcc agtacaatta taaagtcagt cactgctgca atgcgcagtg
    17221 gtgaataacg tcctgaaatc ctgccactta gcatatttcc cagcaccatc cctagcccaa
    17281 ctaacatcat aataaaggtc atcgccgttt ccgaaaaacc ggaaataaac atcatgtatg
    17341 gctttacgta gctgaaccag gcaaacacac ctgcgttgcc aaacatggtg gcggcgaaaa
    17401 ttaaccacgg ggccgggctg cgcaaaaagt gaaattgttc gcgcagcttt cctttcgcct
    17461 cgtcgcgaat atccggcacc caaaaataga ccgatgccat caccgcaata ttaaaaacag
    17521 cgatcaataa aaaggtgtaa cgccagctaa attcctgact taaatacgtt cccagcggaa
    17581 tgcccagcaa attggcgact gtcatcccgg aaaccatccc cgccacggcg gcggtgactt
    17641 ttccgggttt gataattttt gataacacga tcgcgccgac gccaaaaaat gcgccatgcg
    17701 gaaagccgga taccagccga ccaatggcga gcatcaggta agacgaagag agcgtgaaca
    17761 tggcgttgcc aatgacgcac aacgccacca gaaacaacaa gatatgtttg agtgagtagc
    17821 ggctggaaaa gagtgcgatg attggcgcac cgaccaccac tcccagtgca taatacgaga
    17881 tcatatgccc ggcagcagga atcgaaattc ctacgttatg cgccagctcc gtgagcacgc
    17941 ccataatgcc aaattcggcc atccccaaac caaacgtgcc cagagccaaa gataaaatga
    18001 cttttttcat accaccatca caaccaccag aacggctacc aatcaccgta gccaataaag
    18061 tgatagcttg caggataacg accagcaagg ccaagagata attcgcccct ctgtattcat
    18121 tatcctgctg aatagttatt tcactgcaaa cgtactttcc agtttgctgt agcccaggcc
    18181 gttgatcttt ttcactttga tctgcaccgg aatacgctct ttcatcgctt ctacgtggct
    18241 aatcacaccg atggttttgc cactggcgtt cagggcatcc agcgcatcaa gggcggtatc
    18301 cagcgtttcg ctatccagcg tgccaaaacc ttcatcaagg aacagcgagt caatacgtgt
    18361 tttatggctg accagatccg aaagcgccag cgccagcgcc agactaacga ggaaactttc
    18421 gccgccggaa agggtacggg tatcgcgtac cgcatctgcc tgccaggtat caacaacctc
    18481 gacttccagc gcctcgctgg ctttgcgctg taacagatag cgcccgtgca gccgggtaag
    18541 ttgctgatta gcgagatgga ctaaattatc cagcgtcagc ccctgggcaa acttgcggaa
    18601 tttatcgccc tctttggaac ctattagcga attcagatat ccccagtcct caacctgctg
    18661 cgtcatttga gcaatttgct gcattaaggt ttgttgttgc tgacggttat ctgcatcctg
    18721 cttcagctgc tggcgaatct cgccttgact cgtggtgttt tcacgcaact tttggtgagt
    18781 ttgcgctaac tcttgctgaa tctgctccac cgtcacagtg agagccaacc cgtcaggtcg
    18841 gtgttgttga tgctgtgcca gcgtttctgc tgtctgagtg accagcgttt gcgcctgacg
    18901 gcgctggttt tccagattct gcttgagctg ttccagctgc gttagtgttt gttcatccat
    18961 tagcgccgca aggaacgcct gctgatcgtc aaagacgctg gcctgtagcg cggtgtcaaa
    19021 ctgcgcctgg gctttttgca gactttgcgc cgccagaaca tcctgttgct gtaacgtctg
    19081 ctgctggctg tgtaatgcga gacattgttc atgaacctgc cgccagttat ccagcgccac
    19141 agtttcttcg ctgtgcggga gatcatcact ttgcggcaac gtttccagaa tcggcgtcag
    19201 ctgctgaata cggttttgca gcgtggttaa ttcgttctgg cgttgctgcc agctctgcgc
    19261 ttcttgctga cgtgtcgcca accagctctc ttcttcatct tcctgtggca atgtcagtgc
    19321 ataacccgcc aatgccgtta agagctgctg ctggcgttgt tcaatttgct gttgatactg
    19381 gataatttgc tgattatgcg cggcaatctg cccttgtaat tcatgtcgtt ggctgagtaa
    19441 ccgcagctgg cgtttgtgct catcttgtgc atccagccac ggttgaatat cgtcctgtgg
    19501 ctgcaaggtg atattgaggc tggccgtgac ggcttgccat tgttgagtaa gtgcttgctc
    19561 atcttgtcgg aggctttgcg cttcgttttc atcgcgctga agctgcttcg ttaatgcatc
    19621 cagttgcccg cgcagcgccg caccttcttc gccgagcttt ttaacttcgt tttccagcgc
    19681 cagtaatcga gactgattaa caccaggctc cagcgcctga tacgccttga ccgccgggtg
    19741 gctggtggaa ccacaaagtg gacaaggctg acccgcctgt aactgtgcac gctgggcttc
    19801 cagcgttttg atgcgcgctt cctgctcgca aatggttttc acatcggcaa gttgctgcgt
    19861 cttttcttta taacgctggc gcatttcgtt aagtgcgaca ttacgttgcg tctgttccag
    19921 agatccattc tggatagtga ccattaactg cgccagacgt ttttgttggg gaacaatctg
    19981 cccatgcagc gcgaccaggc gctgacgcag tgggcgttgc tcagcatgtt gcgccagggc
    20041 ggtagcaact tcatcggcgg ttaacgtcaa cgtgatcgcc gcaagcgcat taagtttttg
    20101 ctcagcatgg gttaactgtt gctgccattg ccgcagatgc tcgcgatcgc tggtttgttg
    20161 ggagaactgc gcacgccaac ccgccagttc gttgttccac tgacggaagc ggtcgtgttc
    20221 ctgtaaccag gtattcaggc tttgttgctg ctgctgtaat tctgctgact gcttcgccgc
    20281 gtggtggcga atgctcgcgc gaagcgccat tgtgctctgt aagcgagtat ttacttcttc
    20341 aatctgctgg cgagtatgcg ccagcgccgc gctgtgttct gcgatgcgtt cccagtgcgg
    20401 acgaagattt cgtgccggtt gtgccagact gagcgccgcc agttgaggtt gcgctttttc
    20461 ttcttcggct aacgcctgtt gcaaggcctg ctgacggcgg ctggcttctt gctgcaattc
    20521 gtccagacgc gttaaccagt ttagtgattg ttgttcttgc tgctgcgcgg taagtaactg
    20581 tttttcttcg tcagtaagta cctgcaaact cgctgtcagc gattgcactt gttccggcgt
    20641 gagcaacgcg acgccgctgg cctgcgcttg cagcttctcc agctctgtgc gggccgattt
    20701 gtgctgctca aaaaccatcg ccgagatttg cccgtagatt tcagtgccgg ttaactcctc
    20761 gagcaattcc gcgcgttctt tgggtttggc attcaggaag gcagcaaatt gcccctgcga
    20821 aagcagcatc gaacgggtga agcgcccgta atccagcccg gttaacgtcg ctgtcagttc
    20881 cagcttatct ttcactttgt cggcgagaat tttgccgtcg gcgcagcgcg ccagctctac
    20941 gcgtggcacc tgcaaattac cgtcgggttg gttacgcgcc cgattctggc tccagaatgc
    21001 acggtacgct tcacctttca cttcaaactc cacctccgcc agacattcgg cggtatcgcg
    21061 ggtcatgaga tcattttgcg attgtgaaac gttagagaga cgcggagttt cgtgatacag
    21121 cgccagacaa atggcgtcca gcagggtggt tttccccgca ccggttgggc cggtaatggc
    21181 aaacagcccg ttgctggcga acggctcgcg ggtgaaatca atcttccatt cgccttttaa
    21241 tgagttcagg tttttcaggc gcaggctgag aattttcatg cttcgtgttc tccggcgagg
    21301 gtatgcaacg tcgtggtgaa aagatgctgc agacgttgct gctgcgattc atccagttct
    21361 tccagtgcca gacggcgatt gaacacctct tcgacgctga gttcgctgag ggtttcacgc
    21421 tgttggctgg ctaatacacg ctcgcgctgt tcacgactcc gacgtaccag caatacttcg
    21481 acaggcaatg attcggctaa tgcctggatt ttgcgctgaa tatcatgcag atactcatca
    21541 gtagtgattt cgatatccag ccagacaggt ggctcctgcg atacatcgcg ccactgttcc
    21601 agctgtgcgg taatcgacgc cagatcgcct ttcagcaccg ccatgggttg agttaccggt
    21661 acgttcaggt tttccacgct ctctaatttg ccgtttgaaa atgtcaccag atggacatat
    21721 ttactcttac cgcattcatc aaaactcagt ggaatggggg aaccgcaata gcgaacatgt
    21781 tccatgccgc caataatctg tgcgcggtga atatgcccga gcgcgatgta gtcggctggt
    21841 ggaaagtttt gtgccggaaa cgcgtccagc gtgccaatat aaatgtcacg cacggcgtca
    21901 cttttactgg cacccacggt cgttaaatgt cccgtggcga tgatgggcag aggctgatcg
    21961 ccgcgcagtt tgcaggcatc ggcatagtgt tgttggtaat aatcggtaat cgctgccagt
    22021 aaatgctgct gtttttcaat accgttaagc cccgcctggc tggaaataat gtcacgcggg
    22081 cgtaaaaacg gaatggggca cagcactgcg cctggcgtcc cgtcgcgacg aggcaagatt
    22141 tgcggcgcat gtccggcgct ggcgaccacg gttgtattga ggaacgccat gatatcgcgc
    22201 gattcattca gcgtggcgac cgagtcatgg tttcctgcca gtaccaccag atgacagcca
    22261 gtttgctgta aattgacaac aaaacggttg tataacgtgc gggcgtaact gggcggcgag
    22321 ccggtatcga aaacatcacc agcaacaata atcgcatcca cctgatgggt ttgtgctgtc
    22381 tccagcagcc agtcaagaaa agcctgatgt tcagcttcgc ggcttttact gtagaagttc
    22441 tggccgagat gccagtctga ggtgtgaagg atgcgcataa cggttccctg gcgaaaaagc
    22501 atggtcgcga ttatacccaa acagatgtgc catttgcttt tttctgcgcc acggaaatca
    22561 ataacctgaa gatatgtgcg acgagctttt cataaatctg tcataaatct gacgcataat
    22621 gacgtcgcat taatgatcgc aacctattta ttacaacagg gcaaatcatg gcgagacgta
    22681 ttctggtcgt agaagatgaa gctccaattc gcgaaatggt ctgcttcgtg ctcgaacaaa
    22741 atggctttca gccggtcgaa gcggaagatt atgacagtgc tgtgaatcaa ctgaatgaac
    22801 cctggccgga tttaattctc cttgactgga tgttacctgg cggctccggt atccagttca
    22861 tcaaacacct caagcgcgag tcgatgaccc gggatattcc agtggtgatg ttgaccgcca
    22921 gaggggaaga agaagatcgc gtgcgcggcc ttgaaaccgg cgcggatgac tatatcacca
    22981 agccgttttc gccgaaggag ctggtggcgc gaatcaaagc ggtaatgcgc cgtatttcgc
    23041 caatggcggt ggaagaggtg attgagatgc agggattaag tctcgacccg acatctcacc
    23101 gagtgatggc gggcgaagag ccgctggaga tggggccgac agaatttaaa ctgctgcact
    23161 tttttatgac gcatcctgag cgcgtgtaca gccgcgagca gctgttaaac cacgtctggg
    23221 gaactaacgt gtatgtggaa gaccgcacgg tcgatgtcca cattcgtcgc ctgcgtaaag
    23281 cactggagcc cggcgggcat gaccgcatgg tgcagaccgt gcgcggtaca ggatatcgtt
    23341 tttcaacccg cttttaacgc cttgctcatc ggacgcagag cagggcttat gatttcttaa
    23401 ctggagtatc ttacgtgctg gaacggctgt cgtggaaaag gctggtgctg gagctgctac
    23461 tttgttgcct cccggctttc atcctgggtg cattttttgg ttacctgccc tggtttttgc
    23521 tggcatcggt aacaggactg cttatctggc atttctggaa tttattgcgc ctttcatggt
    23581 ggttgtgggt ggatcgcagt atgaccccgc caccggggcg tggtagctgg gaaccgctac
    23641 tatacggctt acaccagatg cagctgcgaa ataaaaaacg ccgccgtgaa ctgggcaatc
    23701 tgattaaacg ctttcgtagc ggcgcggagt cgctgcccga cgcggtggtg ctgaccacgg
    23761 aagagggcgg tattttctgg tgtaacggtc tggcgcaaca aattcttggt ttgcgctggc
    23821 cggaagataa cgggcagaac atccttaacc tactgcgtta cccggagttt acgcaatatc
    23881 tgaaaacgcg tgatttttct cgcccgctca atctggtgct caacaccggg cggcatctgg
    23941 aaattcgcgt catgccttat acccacaaac agttgctgat ggtggcgcgt gatgtcacgc
    24001 aaatgcatca actggaaggg gcgcggcgta acttttttgc caacgtgagc catgagttac
    24061 gtacgccatt gaccgtgtta cagggttacc tggagatgat ggatgagcag ccgctggaag
    24121 gcgcggtacg cgaaaaagcg ttgcacacca tgcgcgagca gacccagcgg atggaagggc
    24181 tggtgaagca gttgctaacg ctgtcgaaaa ttgaagccgc gccgacgcaa ttgctcaatg
    24241 aaaaggttga tgtgccgatg atgctgcgcg ttgttgagcg cgaggctcag actctgagtc
    24301 agaaaaaaca gacatttacc tttgagatag ataacggcct caaagtgtct ggcaacgaag
    24361 atcagctacg cagtgcgatt tcgaacctgg tctataacgc cgtgaatcat actccagaag
    24421 gcacgcatat caccgtacgc tggcagcgag tgccgcacgg tgccgaattt agcgttgaag
    24481 ataacggacc gggcattgca ccggagcata ttccgcgcct gaccgagcgt ttttatcgcg
    24541 ttgataaagc gcgttcccgg caaaccggcg gtagcggatt agggttagcg atcgtgaaac
    24601 atgctgtgaa tcatcacgaa agtcgcctga atattgagag tacagtagga aaaggaacac
    24661 gtttcagttt tgttatcccg gaacgtttaa ttgccaaaaa cagcgattaa tccgcctttg
    24721 tcatctttta ttgccataag ccagtcgatg ctggcttatt ttctttgcag tcaaaatacg
    24781 ggcgttagat tttacaacgg ttggtgattt tttgttcgca tgattagcca tgtctttttc
    24841 acggaaatag tgttttatac tggttggtga tttcttatcg ctatatacct ctggttttta
    24901 gatccctcct tgctttaaaa cgttataagc gtttaaattg cgcttcaggt gctgtcatac
    24961 tgactgcatt aacgcggtaa atcgaaaaac tattcttcgc cgcgccaggt tgggagtatt
    25021 tcccgctaaa attgtttaaa tataccgctg tatcatcccc agggattggc acaaaaattt
    25081 aacgttacaa caccacatcc acaggcagta tgatttatga cccatcaatt aagatcgcgc
    25141 gatatcatcg ctctgggctt tatgacattt gcgttgttcg tcggcgcagg taacattatt
    25201 ttccctccaa tggtcggctt gcaggcaggc gaacacgtct ggactgcggc attcggcttc
    25261 ctcattactg ccgttggcct gccggtatta acggtagtgg cgctggcaaa agttggcggc
    25321 ggtgttgaca gcctcagcac gccaatcggt aaagtcgctg gcgtgctgct ggcaacggtt
    25381 tgttacttgg cggtggggcc gcttttcgct acgccgcgta cagctaccgt ttcctttgaa
    25441 gtggggattg cgccgctgac gggtgattcc gcgctgccgc tgtttatcta cagcctggtc
    25501 tatttcgcta tcgttattct ggtttcgctc tatccgggca agctgctgga taccgtgggc
    25561 aacttccttg cgccgctgaa aattatcgcg ctggtcatcc tgtctgttgc cgctattgtc
    25621 tggccggcgg gttctatcag cacggcgact gaggcttatc aaaacgctgc gttttctaac
    25681 ggcttcgtta acggctatct gaccatggat acgctgggcg caatggtgtt tggtatcgtt
    25741 attgttaacg cggcgcgttc tcgtggcgtt accgaagcgc gtctgctgac ccgttatacc
    25801 gtctgggctg gcctgatggc gggtgttggt ctgactctgc tgtacctggc gctgttccgt
    25861 ctgggttcag acagcgcgtc gctggtcgat cagtctgcaa acggcgctgc tattctgcat
    25921 gcttacgttc agcacacatt tggcggcggc ggtagcttcc tgctggcggc gttaatcttc
    25981 atcgcctgcc tggtaacggc agttggcctg acctgtgctt gtgcagaatt ctttgcccag
    26041 tacgtaccgc tctcttatcg tacgctggtg tttatcctcg gcggcttctc gatggtggtg
    26101 tctaacctcg gcttaagcca gctgatccag atctccgtac cggtgctgac cgctatttat
    26161 ccgccgtgta tcgcactggt tgtattaagt tttacacgct catggtggca taattcgtcc
    26221 cgcgtgattg ccccgccgat gtttatcagc ctgctttttg gtattctcga cgggatcaaa
    26281 gcatctgcat tcagcgatat cttaccgtcc tgggcgcagc gtttaccgct ggccgaacaa
    26341 ggcctggcgt ggttaatgcc aacagtggtg atggtggttc tggccattat ctgggatcgc
    26401 gcggcaggtc gtcaggtgac ctccagcgct cactaaatca ctgaacattt gttttaacca
    26461 cggggctgcg atgccccgtg gttttttatt gtgttgatgg gttaggaatt gatggaaagt
    26521 aagaacaagc taaagcgtgg gctaagtacc cgccacatac gctttatggc actgggttca
    26581 gcaattggca ccgggctgtt ttacggttcg gcagacgcca tcaaaatggc cggtccgagc
    26641 gtgttgttgg cctatattat cggtggtatc gcggcgtata tcattatgcg tgcgctgggg
    26701 gaaatgtcgg tacataaccc ggccgccagc tctttctcgc gttatgcgca ggaaaacctc
    26761 ggcccgctgg caggttacat taccggctgg acctactgct ttgaaatcct aattgtcgcc
    26821 atcgccgatg tgaccgcttt tggtatctat atgggtgtct ggttcccgac ggtgccgcac
    26881 tggatttggg tactgagcgt ggtgctgatc atttgcgccg taaacctgat gagcgtgaag
    26941 gtattcggtg agctggaatt ctggttctcg ttctttaaag tcgccaccat catcatcatg
    27001 attgtcgccg gtttcggcat catcatctgg gggattggca acggcgggca accgaccggt
    27061 attcataacc tgtggagcaa cggcggcttc ttcagtaacg gctggcttgg catggtaatg
    27121 tcgttgcaaa tggtgatgtt tgcttacggt gggatcgaaa ttatcgggat taccgccggt
    27181 gaagcgaaag atcctgagaa atcgattccg cgtgcgatta actccgtgcc gatgcgtatt
    27241 ctggtgttct acgtcggtac gctgttcgtc attatgtcta tctacccgtg gaatcaggtt
    27301 ggcactgccg gtagcccgtt cgtgctgacg ttccagcata tgggcattac ctttgccgcc
    27361 agcattctta actttgttgt gctgaccgct tcgctgtcgg caattaacag tgacgtattt
    27421 ggcgtaggcc gtatgctcca cggtatggca gagcagggca gcgcaccgaa aattttcagc
    27481 aaaacgtcgc gtcgcggtat tccgtgggtt acggtgctgg tgatgactac cgcgctgctg
    27541 tttgcggtgt atctgaacta catcatgccg gaaaacgtct tcctggtgat cgcttcgctg
    27601 gcaaccttcg ccacggtatg ggtgtggatt atgatcctgc tgtcgcaaat cgccttccgt
    27661 cgccgtttgc cgccagaaga agttaaggcg ctgaaattta aagtgccggg tggggtagca
    27721 acgaccatcg gcgggctgat tttcctgctc tttattatcg ggttgattgg ttatcacccg
    27781 gatacgcgta tctcgctgta tgtcggtttc gcgtggattg ttgtgctgtt gattggctgg
    27841 atgtttaagc gtcgccacga tcgtcagctg gctgaaaacc agtaatcctt gcgttctgta
    27901 agccggttca ggaggaaatc ctgatccggc tattccgaaa gttatccgcc cccgtcctcc
    27961 tcccccaaat atccttcaga tgatgagtga tcctgcatta ggctatggca aggtgatcag
    28021 attttcatca caggggaatt atgatgttaa atgcatggca cctgccggtg cccccatttg
    28081 ttaaacaaag caaagatcaa ctgctcatta cactgtggct gacgggcgaa gacccaccgc
    28141 agcgcattat gctgcgtaca gaacacgata acgaagaaat gtcagtacca atgcataagc
    28201 agcgcagtca gccgcagcca ggcgtcaccg cagggcttca gccgaatgcc gccggcacga
    28261 ctggagcagt ttgccgtcga tgtaccggat atcggcccac aatgggctgc ggatcagatt
    28321 ttttatcaga tcttccctga tcgttttgcg cgtagtcttc ctcgtgaagc tgaacaggat
    28381 catgtctatt accatcatgc agccggacaa gagatcatct tgcgtgactg ggatgaaccg
    28441 gtcacggcgc aagcgggcgg atcaacgttc tatggcggcg atctggacgg gataagcgaa
    28501 aaactgccgt atctgaaaaa gcttggcgtg acagcgctgt atctcaatcc ggtgtttaaa
    28561 gctcccagcg tacatcaata cgataccgag gattatcgcc atgtcgatcc gcagtttggc
    28621 ggtgatgggg cgttgctgcg tttgcgacac aatacgcagc agctgggaat gcggctggtg
    28681 ctggacggcg tgtttaacca cagtggcgat tcccatgcct ggtttgacag gcacaatcgt
    28741 ggcacggggg gagcttgtta caaccctgaa tcgccctggc gcgactggta ctcgtttagt
    28801 gatgatggca cggcgctcga ctggcttggc tatgccagct tgccgaagct ggattatcag
    28861 tcggaaagtc tggtgaatga aatttatcgc ggggaagaca gtattgtccg ccattggctg
    28921 acagcgccgt ggagtatgga cggctggcgg ctggatgtgg tgcatatgct gggggaggcg
    28981 ggtggggcgc gcaataatat gcagcacgtt gctgggatca ccgaagcggc gaaagaaacc
    29041 cagccggaag cgtatattgt cggcgaacat tttggcgatg cacggcaatg gttacaggcc
    29101 gatgtggaag atgccgccat gaactatcgt ggcttcacat tcccgttgtg gggatttctt
    29161 gccaataccg atatctctta cgatccgcag caaattgatg cccaaacctg tatggcctgg
    29221 atggataatt accgcgcagg gctttctcat caacaacaat tacgtatgtt taatcagctc
    29281 gacagccacg atactgcgcg atttaaaacg ctgctcggtc gggatattgc gcgcctgccg
    29341 ctggcggtgg tctggctgtt cacctggcct ggtgtaccgt gcatttatta cggtgatgaa
    29401 gtgggactgg atggtaaaaa cgatccgttt tgccgtaaac cgttcccctg gcaggtggaa
    29461 aagcaggata cggcgttatt cgcgctgtac cggcgaatga ttgtgctgcg taagaaaagt
    29521 caggcgctgc gtcgtggcgg ctgtcaggtg ctgtatgcgg aagataacgt agtggtattt
    29581 gtccgcgtgc tgaatcagca acgtgtactg gtggcaatca accgtggcga ggcctgtgaa
    29641 gtggtgctac ccgcgtcacc gtttctcaat gccgtgcaat ggcaatgcaa agaagggcat
    29701 gggcaactga ctgacgggat tctggctttg cctgccattt cggctacggt atggatgaac
    29761 taacgtttta taacgccttg tgtgacgcct gcgccatcat ccgcggataa aactgccaga
    29821 agcgggttcc gagggcggta taatgggcgt ttaaatcgta ccaggagtca cgcagggcat
    29881 ccagacgtgg gcgacggctt gccatgccgt ttaacacgtt ctggatgaaa tccatatcgc
    29941 gatagcgcac cagccactgc tctgaccaca agtaattgtt tagattgata aaacgtggcg
    30001 gtgagtccgg caaaatcgtc atcacttgct tgcgggcata acagataaat tcctgtagcg
    30061 gaaagtccgg cgacagctgc gaccagtggc gggaaagaaa gtgatcccac atgacatcca
    30121 gcgtaatagg cgcaacgcgg cgcgtttcac gacgaaacca ctcccgtgct tcgcggactt
    30181 ccggcagatt gtcagtcaat acgtcgatac gtcgatgcat atgaatgcca gccacgacgt
    30241 cgggcggaaa actttcttca ggatttccgc gtacgaaatc agccagtaaa ttgccggaaa
    30301 gcgagctttc cgcgagatgg gctaaatgca ggtgagctaa aaaattcatc gattatattc
    30361 tatccaaagg ggggtaaagg ttgcagggag agcgccccgg cactagacta cccgcctctt
    30421 attttagtct gagtcagtgt catgcgcgtt accgatttct tctttgaatt gcccgaatcc
    30481 ctgattgccc actaccccat gcctgaacgc agtagctgtc gtttactgtc gctggacggg
    30541 cctacgggcg cgctgacgca cggtactttc accgatttac tcgataagct caaccccggc
    30601 gatcttctgg tttttaataa tactcgcgtg atcccggcgc gcctgtttgg gcgtaaagcc
    30661 agcggcggca agattgaagt gctggttgag cggatgctcg acgacaaacg cattcttgcg
    30721 catattcgcg cctcgaaagc gccaaaacct ggcgcagaac tgctgctggg cgatgacgaa
    30781 agtattaacg caacaatgac cgcgcgccac ggcgcactgt ttgaagtcga attcaatgat
    30841 gatcgttcgg tactggatat cctcaacagt atcgggcata tgccgctgcc gccgtatatc
    30901 gaccgtccgg acgaagacgc tgaccgcgaa ctttatcaaa ccgtttatag cgaaaaaccg
    30961 ggcgcggttg cagccccgac cgctggtctg cattttgacg agcctttgct ggaaaaattg
    31021 cgcgccaaag gcgtggagat ggcgtttgtg acgttgcacg ttggtgcggg caccttccag
    31081 ccggtgcgcg tcgacaccat tgaagatcac atcatgcact cggaatacgc tgaagtaccg
    31141 caggatgtgg tagacgcggt actggcggcg aaagcgcgcg gtaaccgggt gattgcggtt
    31201 ggcaccactt cagtacgttc gctggaaagc gcggctcagg cagcgaaaaa cgatctcatt
    31261 gaaccgttct tcgacgatac ccaaatcttt atctatccgg gcttccagta caaagtggtc
    31321 gatgcgctgg tgacgaactt ccacttgcca gagtcgacgc tgattatgct ggtttcggcc
    31381 tttgccggtt atcaacacac catgaacgcc tataaagcag cggtagaaga gaaatatcgc
    31441 ttttttagtt acggtgatgc gatgtttatt acgtacaatc cgcaggcaat taatgagcgc
    31501 gtcggggagt aattccgcgg cgctggttta aaacgttgga ctgtttttct gacgtagtgg
    31561 agaaaaaatg aaatttgaac tggacaccac cgacggtcgc gcacgccgtg gccgcctggt
    31621 ctttgatcgt ggcgtagtgg aaacgccttg ttttatgcct gttggcacct acggcaccgt
    31681 aaaagggatg acgccggaag aagttgaagc cactggcgcg caaattatcc tcggcaacac
    31741 cttccacctg tggctgcgcc cgggccagga aatcatgaaa ctgcacggcg atctgcacga
    31801 ttttatgcag tggaaggggc cgatcctcac cgactccggg ggcttccagg tcttcagcct
    31861 tggcgatatt cgtaaaatca ccgaacaggg cgtgcacttc cgtaacccga tcaacggcga
    31921 tccgattttc ctcgatcctg aaaaatcaat ggagattcag tacgatcttg gttcggatat
    31981 cgtcatgatc tttgatgagt gtacgccgta tcctgctgac tgggattacg caaaacgctc
    32041 catggagatg tctctgcgtt gggcgaagcg tagccgtgag cgttttgaca gtctcggaaa
    32101 caaaaatgcg ctgtttggta tcattcaggg cagcgtttac gaagatttac gtgatatttc
    32161 tgttaaaggt ctggtagata tcggttttga tggctacgct gtcggcggtc tggctgtggg
    32221 tgagccgaaa gcagatatgc accgcattct ggagcatgta tgcccgcaaa ttccggcaga
    32281 caaaccgcgt tacctgatgg gcgttggtaa accagaagac ctggttgaag gcgtacgtcg
    32341 tggtatcgat atgtttgact gcgtaatgcc aacccgcaac gcccgaaatg gtcatttgtt
    32401 cgtgaccgat ggcgtggtga aaatccgcaa tgcgaagtat aagagcgata ctggcccact
    32461 cgatcctgag tgtgattgct acacctgtcg caattattca cgcgcttact tgcatcatct
    32521 tgaccgttgc aacgaaatat taggcgcgcg actcaacacc attcataacc ttcgttacta
    32581 ccagcgtttg atggcgggtt tacgcaaggc tattgaagag ggtaaattag agagcttcgt
    32641 aactgatttt taccagcgtc aggggcgaga agtaccacct ttgaacgttg attaatatta
    32701 ataatgaggg aaatttaatg agctttttta tttctgatgc ggtagcggca acgggtgcac
    32761 cggcgcaagg tagcccgatg tctttgattt tgatgctggt ggtattcggt ctgattttct
    32821 atttcatgat cctgcgtcca cagcagaagc gcaccaaaga acacaaaaag ctgatggact
    32881 ccattgccaa aggtgatgaa gttctgacga acggtggcct ggttggtcgc gtaaccaaag
    32941 tagcggaaaa cggctacatt gctatcgcgc tgaatgacac cactgaagta gttattaaac
    33001 gtgacttcgt agctgccgtc ctgccgaaag gcaccatgaa ggcgctgtaa ttaaaatttt
    33061 tccctaaggg aattgccgtg ttaaaccgtt atcctttgtg gaagtacgtc atgctgatcg
    33121 tggtgattgt catcggtctg ctgtatgcgc ttcccaacct gtttggtgag gatccggctg
    33181 ttcagatcac tggtgcgcgc ggagtcgccg ccagtgagca aacgctgatc caggtccaga
    33241 aaacgttaca agaagaaaaa ataactgcta agtctgtggc actggaagag ggcgctattc
    33301 ttgcgcgctt cgactccact gacacccagc tgcgcgctcg tgaagcatta atgggcgtta
    33361 tgggtgacaa atacgtcgtg gcgcttaacc ttgccccggc aacgccgcgc tggctggcag
    33421 ctattcacgc tgagccgatg aagctcggcc ttgacctgcg tggcggcgtt cacttcctga
    33481 tggaagtgga tatggacacc gcgcttggca aactccagga acaaaatatc gatagcctgc
    33541 gcagcgatct gcgtgaaaag ggcatcccgt ataccaccgt tcgtaaagaa aacaactacg
    33601 gcctgagcat tactttccgc gatgctaaag ctcgtgatga agccattgcg tatctgagca
    33661 agcgccatcc ggacctggtg attagtagcc agggcagcaa ccagctgcgt gcggtaatga
    33721 gcgatgctcg tctgagtgaa gcgcgtgaat atgcggtgca gcagaacatc aatatcctgc
    33781 gtaaccgtgt aaaccaactt ggcgtagcgg agccggtggt tcagcgtcag ggtgctgacc
    33841 gtatcgttgt tgaactgcca ggtattcagg acactgcgcg tgcgaaagag attctgggtg
    33901 cgacggcaac gctggaattc cgtctggtaa acaccaacgt tgaccaggcc gctgcggcat
    33961 ccggtcgcgt accgggcgac tctgaagtga aacagacccg cgaaggtcag ccagttgtgc
    34021 tgtacaaacg cgtaattctg accggtgacc atatcaccga ctccacttcc agccaggacg
    34081 aatacaacca accgcaggtt aacatctcgc tcgatagcgc tggtggtaac atcatgtcta
    34141 acttcactaa ggacaacatc ggcaaaccga tggcaaccct gtttgtggag tacaaagaca
    34201 gcggtaagaa agatgcaaat ggtcgtgcgg ttctggtgaa acaggaagag gtgattaaca
    34261 tcgccaacat ccagtctcgt ctgggtaaca gcttccgtat caccggcatc aacaacccga
    34321 acgaagcccg tcagctgtca ctgctgctgc gtgccggtgc gttgatcgcg ccgattcaga
    34381 ttgttgaaga acgtaccatt ggcccaaccc tgggtatgca gaacattgaa caggggctgg
    34441 aggcttgcct tgccggtctg ctggtttcta ttctgttcat gatcatcttc tataagaagt
    34501 ttggtctgat tgcgaccagt gctctgattg ccaacttgat cttaatcgtc ggcattatgt
    34561 cgctgttgcc aggcgcaacg ctgagtatgc caggtatcgc gggtatcgtc ttaacccttg
    34621 cggtggcggt cgatgcgaac gtactgatca acgaacgtat taaagaagag ttgagcaacg
    34681 gacgtactgt tcaacaggca attgatgaag gttatcgtgg cgcattcagt tctatcttcg
    34741 atgcgaacat caccacgctg attaaagtca tcatcctgta cgcagtgggt accggggcaa
    34801 ttaaagggtt cgcgattact accggtatcg gtgtggcgac gtcgatgttt accgcgattg
    34861 tcggtacgcg tgccatcgta aacctgctat atggcggcaa gcgcgtcaag aagctgtcaa
    34921 tctgaggagt gcgatgtggc acaggaatat actgttgaac aactaaacca cggccgtaaa
    34981 gtctatgact ttatgcgctg ggactactgg gctttcggca tctctggtct gctgttaatc
    35041 gccgctatcg ttattatggg cgtgcgcggc tttaactggg ggctggattt caccggtggt
    35101 acggttatcg aaattacgct cgaaaaaccg gctgaaattg acgtaatgcg tgatgcattg
    35161 caaaaagccg gttttgaaga gccaatgctg caaaactttg gtagcagcca cgacatcatg
    35221 gtccgtatgc cgcctgctga aggcgaaacc ggcggtcagg tgctgggcag ccaggttctg
    35281 aaggtgatta acgaatccac caatcagaat gcagcagtga agcgtattga gttcgtcggt
    35341 ccgagcgtgg gggcagacct tacgcaaacc ggtgcgatgg cgttgatggc ggcgctgctg
    35401 tctatccttg tgtacgtagg ttttcgcttt gagtggcgac tggcggcagg ggttgttatt
    35461 gcgctggcgc acgacgttat cattacgctg ggtattttgt cgttattcca tatcgagatt
    35521 gacctgacca ttgtggcatc gttgatgtcg gttatcggtt actcgcttaa cgacagtatc
    35581 gtggtatcgg accgtattcg tgaaaacttc cgcaagatcc gtcgcggtac gccttacgaa
    35641 atctttaacg tgtccttgac ccagacgctg caccgtacct tgatcacatc cggtactacc
    35701 ttgatggtta tcctgatgct gtacctcttc ggtggtccgg tactggaagg cttctcgctg
    35761 accatgctta tcggtgtttc catcggtact gcatcttcca tctatgtggc atctgcgttg
    35821 gctctgaaac tgggtatgaa gcgcgaacac atgttgcagc agaaagtgga aaaagaaggg
    35881 gcggatcagc cgtcaattct gccgtaatca agttcccgtt gatgttgaaa atcccggtca
    35941 gaagatcggg attttttttg atgtatggag attgcgaaaa tccccgcatc ttgggaaact
    36001 gcgcgtaacc ctacatttca tccaggtaac tcttcatggc tatcatccca aaaaactatg
    36061 cgcggttaga aagcggctat cgcgaaaaag cattaaaaat atatccgtgg gtctgcggtc
    36121 gctgttcccg cgagtttgtt tattccaacc tgcgtgaact taccgttcac cacattgatc
    36181 acgaccatac caataacccg gaagatggca gtaactggga attgctttgt ctctattgcc
    36241 acgatcatga gcattcgaaa tataccgaag cggatcagta tggtacgacc gttatcgcag
    36301 gggaagatgc gcagaaagat gtcggtgaag cgaagtacaa cccattcgct gacctgaaag
    36361 cgatgatgaa caagaagaag tgattaaaac gtaaaattgc ctgatgcgct acgcttatca
    36421 ggcctacgtt atttcagcaa tatattgaat ttacgtgctt ttgtgggccg gacaaagcgt
    36481 ttacgccgca tccggcatga acaaagctca cgttgttaac aatcagaaat gccgggaata
    36541 aatcccggca ttttcataat cagaagttgt aacctactac caggtaacca ccccagccgg
    36601 tagagcgaac gttgaagttg ccgttgccga agttcagttc tgcatcgtcg ttccactgac
    36661 caccgtcgtg ccagtaacga gctacgacag agtagtgcca gtgatcgtag ttcagagcca
    36721 gaatatggct ggaagcgata gagttattag tacgggtctt aataccgttg attgcgttac
    36781 cgctgtcatc ccctaaatcg gaaccccagt cgaagttggt gaagccgatg tagctcagct
    36841 gaccgcccca cagatcggta atcggcacaa agtatttaat tttgaaacgg taaccgtccc
    36901 actcgttttc gttcgctgcg ccatagttct gccactggta tttcgcatag acgttcatgg
    36961 acaggctcat cggcagacca gtatcgatgt cggtacccag acccatgtac caggtgctct
    37021 ggcgaccatt tttattacga cccatgtcgt aaatgtagtt gttcgcgaag taccactctt
    37081 tgaacggacc gaagttaagg tcagtattgg tcagcttgtc gatggagaaa cgtggttcga
    37141 tttccataaa cagcggagaa ccgtggttcc agataccttt agcatcggag ttaccgccga
    37201 agaataccgg cgcatccgca taaccataga agtcgaacca gtctttttta gcgaatgctt
    37261 cgtactcaag gtaggtatcg ttgcggatct gcggtccgaa acgggtgtga tagcttccga
    37321 caacgttaac gctctggtgc caccagtcgg aaagatactg cggtttgtcg ttttcagctg
    37381 cgttgacagt aaaagacgaa gagagcgcca gtaccgcacc ggctgccagt aatgtttttt
    37441 tcatatgtat gccactgttt gaaaatccct tgcgggagtg aaaaaggcgc aaattgcgtt
    37501 tctaaatatt tcgtatacag aggagcctat tataaaaatc attgctcaca aaaatatgtt
    37561 tcgtttcaca gttctatcat ttacgtaatc gattgcgttc acgtttacac acattcgggc
    37621 ggggattgta ctgactttcg cccttgttgc aaacttttac tatcaatcca ggtgatgtaa
    37681 gcagagtaac aaaatgacgg ggaaagatgt tgcgggacgc acaaaatcgt cccgaaatac
    37741 gtttactgca taacaggttg aatgtcgtgg atacgtacaa agcctaactg atccacagaa
    37801 atccccttta attgtaacgg aatatcaaca tcgctggggg cgaggacgct ggcaggggca
    37861 ttaatcaatt gattctgcac attgatttcc tgaaagttgt ctattgttcc ctgaatttgc
    37921 ccatattcaa cagttccgct gaatgcgggc aagggatcat tcgactcacc ctgaatacgt
    37981 agtgtaaggg tggtgccatc tgtatcaggc gtaatattca ccagcgacat acgtaaagta
    38041 ccgatctggc tttccagtct tgccggtgtt ttcgctccag gcagaaggta acccccactg
    38101 ctggattttg cattcagtct gttttgctga gtgattttga ctgtttcttg attgagttgc
    38161 gtcatctcct ggttcagcgt gctgacgctg tgtttcatct gtcgcacttc actttgctgc
    38221 acacaggcgc taaggctgaa caggcttccc agcaggagca gtcgaaaaac gttagtattc
    38281 ataggtcgtc cctttctcgt cgcaattagc ctaatggtag agggtaaaag cagcgaaagc
    38341 atcgatcctt tatctcaaaa gcgttgcgcc tttgttgtat cgtcagttca gggtaaaata
    38401 gatttccgtt aaccacctgg tcaggacgcc gtatgcattg cccattctgt ttcgccgtgg
    38461 acactaaggt aattgactct cgtctcgtgg gcgagggttc atccgtacgc cgccgtcggc
    38521 agtgtctggt gtgtaatgaa cgtttcacca cctttgaagt ggcggagctg gttatgccgc
    38581 gtgttgtaaa aagcaacgac gtgcgtgaac cgtttaatga agagaaattg cgtagcggaa
    38641 tgctgcgggc gctggaaaaa cgtccggtga gttccgatga cgttgaaatg gcaatcaatc
    38701 atattaaatc gcagctgcgc gccaccggtg agcgcgaagt accgagcaag atgattggca
    38761 atctggtgat ggagcaattg aaaaagctcg ataaagtcgc ctatatccgt tttgcctctg
    38821 tctaccgcag tttcgaagat atcaaagaat ttggcgaaga gatcgcgcgc ctggaggact
    38881 aagccgtgca ggacgagtat tacatggcgc gggcgctaaa gctggcgcaa cgaggacgtt
    38941 ttaccaccca ccccaaccca aatgtcgggt gcgtcattgt caaagatggc gaaattgtcg
    39001 gtgaaggtta ccatcaacga gcgggtgaac cacatgccga agtacacgcg ttgcgtatgg
    39061 cgggtgaaaa agccaaaggt gcaacggcgt atgtgacact cgaaccttgc agccatcacg
    39121 gccgtacgcc gccttgctgt gatgctttaa ttgccgcagg tgtggcgcgc gtggttgcct
    39181 cgatgcaaga tcctaacccg caggtcgctg ggcgtggact ttaccgtctg caacaggctg
    39241 gcattgacgt cagccacggc ctgatgatga gtgaagccga gcaattgaat aaaggctttc
    39301 tcaagcggat gcgcaccggc tttccttata ttcagttaaa acttggcgca tcgcttgatg
    39361 gtcgcacggc gatggcgagc ggcgaaagcc agtggatcac ttcgccccag gcgcggcgtg
    39421 atgtacaacg actgcgcgcg caaagtcatg ccattttaac cagcagcgcc acggtgctgg
    39481 cggatgatcc tgccttaacg gtgcgttggt ccgaactgga tgaacaaact caggcgctct
    39541 acccgcaaca aaatctccgc cagccggtac gtattgtgat tgatagccaa aatcgcgtga
    39601 cgccggaaca tcacattgtg cagcagcccg gcgaaacctg gttcgcgcgt acgcaggaag
    39661 attctcgtga gtggccggaa acggtgcgta ccttgctgat tccagagcat aaaggtcatc
    39721 tggatctggt tgtactgatg atgcaactgg gtaaacagca gattaacagc atctgggggg
    39781 aagcggggcc aacgctcgct ggcgcattgc tgcaggcggg tttagtcgat gagctgattg
    39841 tctatatcgc acctaaacta ttaggcagcg acgcccgtgg attatgcacc ctgccagggc
    39901 ttgagaaatt agccgacgcc ccccaattta aattcaaaga gatacgtcat gtaggcccgg
    39961 atgtttgcct gcatttagtg ggtgcatgat ctcccggctc gaaagggaag cagcgcacga
    40021 aatattatgc taaaatccgc ccccctgcgg ggccatactc gaacccgaag gaagaaaatg
    40081 aacattattg aagctaacgt tgctaccccg gacgctcgcg tcgccatcac catcgcgcgt
    40141 ttcaacaact ttatcaatga cagcctgctg gaaggtgcaa ttgacgcact gaaacgtatc
    40201 ggtcaggtaa aagatgaaaa cattaccgtt gtttgggtgc ctggtgccta tgagctgccg
    40261 ctggcggcgg gtgcactggc taaaaccggt aaatacgacg cggtgattgc gctgggtacg
    40321 gttattcgtg gtggcactgc ccattttgaa tatgtcgctg gtggtgcaag caacggcctg
    40381 gcgcatgttg cccaggacag cgaaattccg gttgcttttg gggttctgac cactgaaagc
    40441 attgaacaag cgatcgaacg tgctggcacc aaagctggca acaaaggtgc agaagctgca
    40501 ctgaccgcgc ttgaaatgat taatgtattg aaagccatca aggcctgaaa ttagtaaggg
    40561 gaaatccgtg aaacctgctg ctcgtcgccg cgctcgtgag tgtgccgtcc aggcgctcta
    40621 ctcctggcag ttgtcccaga acgacatcgc tgatgttgaa taccagttcc tggctgaaca
    40681 ggatgtaaaa gacgttgacg tcctgtactt ccgtgagctg ctggccgggg tggcgactaa
    40741 taccgcatac ctcgacggac tgatgaagcc atacctgtcc cgtctgctgg aagaactggg
    40801 acaggtagaa aaagcagtac tgcgcattgc gctgtacgaa ctgtctaaac gtagcgatgt
    40861 gccatacaaa gtggccatta acgaagcgat cgaactggcg aaatcgttcg gcgcagaaga
    40921 cagccataag ttcgtcaacg gtgtactcga taaagcagca cctgtgattc gccctaacaa
    40981 aaagtaatat ccaggccggt agattcacgg aagaccgttc catgatcgcc ggccttttct
    41041 tttttacctg ctgaggcata acgtatggca tgtggcgagt tctccctgat tgcccgttat
    41101 tttgaccgtg taagaagttc tcgtcttgat gtcgaactgg gcatcggcga cgattgcgca
    41161 cttctcaata tccccgagaa acagaccctg gcgatcagca ctgatacgct ggtggcgggc
    41221 aaccacttcc tccctgatat cgatcctgct gatctggcgt ataaagcact ggcggtgaac
    41281 ctaagcgatc tggcagcgat gggggccgat ccggcctggc tgacgctggc attaaccttg
    41341 ccggacgtag acgaagcgtg gcttgagtcc ttcagcgaca gtttgtttga tcttctcaat
    41401 tattacgata tgcaactcat tggcggcgat accacgcgtg ggccattatc aatgacgttg
    41461 ggtatccacg gctttgttcc gatgggacga gccttaacgc gctctggggc gaaaccgggt
    41521 gactggatct atgtgaccgg tacaccgggc gatagcgccg ccgggctggc gattttgcaa
    41581 aaccgtttgc aggttgccga tgctaaagat gcggactact tgatcaaacg tcatctccgt
    41641 ccatcgccgc gtattttaca ggggcaggca ctgcgcgatc tggcaaattc agctatcgat
    41701 ctctctgacg gtctgatttc cgatctcggg catatcgtga aagccagcga ctgcggcgta
    41761 cgtattgacc tggcattgct gccgttttct gatgcgcttt ctcgccatgt tgaaccggaa
    41821 caggcgctgc gctgggcgct ctctggcggt gaagattacg agttgtgttt cacggtgccg
    41881 gaactgaacc gtggagcgct ggatgtggct ctcggacacc tgggcgtacc gtttacctgt
    41941 atcgggcaaa tgaccgccga tatcgaaggg ctttgtttta ttcgtgacgg tgaacctgtt
    42001 acgttagact ggaaaggata tgaccatttt gccacgccat aaagatgtcg cgaaaagtcg
    42061 cctgaagatg agtaatccgt ggcatctact tgctgtcgga ttcggaagtg gattaagccc
    42121 gatcgttcct gggacgatgg gctcgctggc agcgattccg ttctggtatc tgatgacctt
    42181 tttgccctgg cagctctact cgctggtggt gatgctgggg atctgtatcg gcgtctatct
    42241 ttgtcatcag accgcaaaag atatgggcgt gcacgatcac ggcagcattg tctgggacga
    42301 atttattggt atgtggatca cgctcatggc gctgccgacc aatgactggc agtgggttgc
    42361 cgccgggttt gtgattttcc gtattctgga tatgtggaaa ccgtggccga tccgctggtt
    42421 tgatcgcaat gtgcatggcg gcatggggat catgatagat gatattgtcg ccggggtgat
    42481 ctccgctggc atcctgtact ttattggtca tcactggccg ctgggcattc tgtcgtagtt
    42541 gtgcaccgat gcctgatgtg acgcttgttg cgtctcatca ggcctggact cttatttaaa
    42601 tcctactacc ggatgcggtt tatacggcgt ttccagttcg gcaatctgtt ccggcttcaa
    42661 agtgatatcc accgcgttca atagctcatc aagctgttct tcccgcgatg taccgataat
    42721 cggtgcggca atgcccggtt tactcaacaa ccaagccagc gcaacttgtg ctcgtgttgc
    42781 accgagttct tcactgacgc ccgttaaccg ctctgcgatc tgcgcgtcat tttcatcgct
    42841 ttctttatag agatttttcc ccacctcatc agacaccagt cgtgcggtag tttctcccca
    42901 cggacgcgtc agtcgccccc gcgccagcgg gctccacgga atcaccgcca cgccctcctg
    42961 ataaaacagt ggcagcatct cgcgctcttc ttcgcgataa atcagattgt agtgatcctg
    43021 catactgaca aactgcgccc agccgtgctg tttttggagt tccagtgcct gagcaaactg
    43081 cgaagcgtgc attgatgacg cgccgatata acgcgctttc ccggctttta ccacgtcgtt
    43141 cagggcttcc agcgtctctt cgatcggcgt gttgtaatcc cagcgatgaa tttgcaggat
    43201 atcgacataa tccatgccga gacgtcgcag gctgtcgtcg atagagcgca aaatttgtgc
    43261 acgggataat ccttccggta aatcaccaac gcgatggaac actttggtgg caacgaccac
    43321 gtcttcacga cgggcgaaat cccgcagtgc gcgaccaacg atctcttcgc tgctaccatc
    43381 ggaatagcta ttggcggtat caaagaaatt tatgccgcct tccagtgcgc gtttaattat
    43441 gggacggctg ctctcttccg gcagtgtcca tgcgtgatta ccacgatctg gctcgccaaa
    43501 ggtcatacag ccgaggcaaa gtcgggaaac gcgaaggtcg gtttttccta aggggttgta
    43561 ttgcatgctg ccactcctgc catgaataat ttcttaagca tagcaggagt ggagtaggga
    43621 ttatgccagc caggccttga ttttggcttc cataccggcg gcatcgaggc cgagttcggc
    43681 gcgcatttct tcctgcgttc cttgcggaat aaagaagtca ggcaggccaa tgttcagcac
    43741 ggggactggt ttacgatggg ccattagcac ttcgttcact ccgctgcctg caccgcccat
    43801 aatggcgttt tcttctacgg taaccagtgc ttcatgactg gcggccattt ccagaattaa
    43861 cgcttcatca agcggtttca caaaacgcat atcgaccagc gtggcgttca gcgattcggc
    43921 gactttcgcc gcttctggca tcagcgtacc aaagttaagg atcgccagtt tctcgccacg
    43981 acgcttcaca atgcctttgc caattggtag tttttccagc ggcgtcagtt ccacgccgac
    44041 cgcgttgcca cgcgggtagc gcaccgctga cgggccatcg ttatagtgat agccggtata
    44101 gagcatctgg cgacattcgt tttcatcgct cggggtcata atgaccattt ccggtatgca
    44161 gcgcaggtaa gagagatcaa aagcaccctg atgggtttga ccgtcagcac caacaatgcc
    44221 cgcgcggtcg atggcgaaca ggaccggaag cttttgaatt gccacgtcat gcagcacctg
    44281 atcataggcg cgttgcagga aagtggagta gatcgcgaca atgggtttgt acccaccaat
    44341 cgccagaccg gcggcaaagg tcactgcgtg ttgctcggca attgccacgt cgaagtagcg
    44401 atccgggaat ttacgagaaa actcgaccat gccggaacct tcacgcatcg ccggagtaat
    44461 cgccatcagc ttgttatctt tcgccgccgt ttcgcacaac cagtcgccaa agatttttga
    44521 atagctcggt aaaccgccgc tacttttcgg caaacaaccg ctggagggat caaatttagg
    44581 cacggcgtgg aaagtgattg ggtctttttc tgccggttca taaccacgac cttttttggt
    44641 catgatatgc aggaactgcg ggcctttcag gtcacgcatg ttcttcagcg tggtgataag
    44701 ccccagcaca tcgtgaccgt caaccgggcc gatgtagtta aagcccagct cttcaaacaa
    44761 cgtgccaggg actaccatgc ctttaatatg ttcttcggta cgtttgagca gctctttaat
    44821 gggtggcacg ccagagaaaa cttttttccc gccttcgcgc agtgaagagt aaagcttacc
    44881 ggaaagcagc tgcgccagat ggttgttgag cgcgccgaca ttttcggaaa tcgacatttc
    44941 gttgtcgttg aggaccacca gcatatcagg acggatatcg cccgcgtgat tcatcgcttc
    45001 aaacgccatg cctgcggtaa tcgcgccatc gccgattaca cagacggtac ggcgattttt
    45061 gccttctttc tcggcagcaa ccgcaatacc aattccggca ctgatggagg ttgatgaatg
    45121 cccgacgctt aatacgtcat attcgctttc gccgcgccac gggaacgggt gcaggccgcc
    45181 tttctgacgg atggtgccga ttttgtcgcg gcgtccggtc aaaattttat gcggataagc
    45241 ctgatgcccc acatcccaaa tcaattggtc aaacggggtg ttgtagacat agtgcagcgc
    45301 cacggtcagt tcgaccgtgc ccagcccgga ggcgaagtgc ccgctggaac ggctcacgct
    45361 gtcgagtaaa tagcggcgca gttcgtcgca gagtttcggt aaactctctt tcggcaacag
    45421 tcgtaactcc tgggtggagt cgaccagtgc cagggtcggg tatttggcaa tatcaaaact
    45481 catcaggggc ctattaatac ttattgttta tttattacgc tggatgatgt agtccgctag
    45541 cgcttccagt gccgaggtat cgggtgactg ttcagccagt tgtttcagcg actgacgggc
    45601 atcgtcgatc agatcccggg ctttcttccg ggcttgctca agacccagaa gtgcagggta
    45661 ggtactttta ccaagttgct ggtcggcacc ctggcgtttt cccaacgttg cagtatctcc
    45721 taccacatcc aggatgtcat cctgaacctg gaaggcaagg ccgatgctct ctgcgtactt
    45781 gtcgagtact ggcagagcac gacgcccttt atctccggcg cttaatgcac caaggcgaac
    45841 ggcggcgcga atcaatgcgc cggttttatg acgatgaata cgctcaagcg cgtccagagg
    45901 tacgtgtttg ccttccgcgt ctaaatctaa tgcctgacca ccgcacattc cggcaatacc
    45961 gctggcgctc gccagttcag aaatcatcga aattctgtcg cgatccgaca cttccggcat
    46021 atcagcatcg cttaaaatcg agaacgccag cgtttgtaaa gcgtcgccag cgagaatcgc
    46081 gtttgcttcg ccaaacttca catggcaggt cggcaaaccg cgacgcagat cgtcatcatc
    46141 catcgccggt aaatcatcat gaattaatga gtaagcgtgg atacactcta cggcggcagc
    46201 gggtgcgtcc agcgtgtttg tgctaacgcc aaacatatga ccggtggcat aaaccaggaa
    46261 gggtcgcaga cgcttaccac ctaataatgc accatactgc atggtttcga ccacgggagt
    46321 gttctgaaag ggcagtgggg cgataaaacg gctcagcgcc tggttggcct gcttaacgca
    46381 ggcttcgagt tgctgcggaa agtccattac tcattgtccg gtgtaaaagg ggttagagag
    46441 gcgtcttcat tgtcagacag cagaatttgt acgcgctgtt cggcttgttg taatttggcc
    46501 tgcccctgac gtgccagctg cacgccgcgt tcgaactcgt tcagcgcctc ttccagcggc
    46561 aggtcgccac tttccagacg ggttacaatc tgttccagct cgctcagcgc cttttcaaag
    46621 ctggcgggag cctcattttt cttcggcata atgaatgtct gactctcaat atttttcgcc
    46681 ccgtcatggt aacggactca gggcaaatag caaataacgc gcaatggtaa ggtgatgtgc
    46741 gcagcaaagc gatgttagtg gtatacttcc gcgcctggat gcagccgcag gtgtgggctg
    46801 ctgtattttt ccctatacaa gtcgcttaag gcttgccaac gaaccattgc cgccatgaag
    46861 tttatcatta aattgttccc ggaaatcacc atcaaaagcc aatctgtgcg cttgcgcttt
    46921 ataaaaatcc ttaccgggaa cattcgtaac gttttaaagc actatgatga gacgctcgct
    46981 gtcgtccgcc actgggataa catcgaagtt cgtgcaaaag atgaaaacca gcgtctggct
    47041 attcgcgacg ccctgacccg tattccgggt atccaccata ttctcgaagt cgaagacgtg
    47101 ccgtttaccg acatgcacga tatttttgag aaagcgttgg ttcagtatcg cgatcagctg
    47161 gaaggcaaaa ccttctgcgt acgcgtgaag cgccgtggca aacatgattt tagctcgatt
    47221 gatgtggaac gttacgtcgg cggcggttta aatcagcata ttgagtccgc gcgcgtgaag
    47281 ctgaccaatc cggaagtgac tgtccatctg gaagtggaag acgatcgtct cctgctgatt
    47341 aaaggccgct acgaaggtat tggcggtttc ccgatcggca cccaggaaga tgtgctgtcg
    47401 ctcatttccg gtggtttcga ctccggtgtt tccagttata tgttgatgcg tcgcggctgc
    47461 cgcgtgcatt actgtttctt taaccttggc ggcgcggcgc atgaaattgg cgtgcgtcag
    47521 gtggcgcatt atctgtggaa ccgttttggc agctcccacc gcgtgcgttt tgtcgctatt
    47581 aatttcgaac cggtcgtcgg ggaaattctc gagaaaatcg acgacggtca gatgggcgtt
    47641 atcctcaaac gtatgatggt gcgtgccgcg tctaaagtgg ctgaacgtta cggcgtacag
    47701 gcgctggtca ccggcgaagc gctcggccag gtgtccagtc agacgctgac caacctgcgc
    47761 ctgattgata acgtctccga tacgctgatc ctgcgtccgc tgatttctta cgacaaagag
    47821 cacatcatca acctggctcg ccagattggc accgaagact ttgctcgcac gatgccggaa
    47881 tattgcggtg ttatctccaa aagcccgacg gtgaaagcgg ttaagtcgaa gattgaagcg
    47941 gaagaagaga aattcgactt cagcattctc gataaagtgg ttgaagaagc gaataacgtt
    48001 gatatccgcg aaatcgccct gcagaccgag caggaagtgg tggaagtgga aaccgtcaat
    48061 ggcttcggcc cgaacgacgt gatcctcgat atccgttcta tcgatgaaca ggaagataag
    48121 ccactgaaag tcgaagggat tgatgtagtt tctctgccgt tctataaact gagcaccaag
    48181 tttggcgatc tcgaccagaa cagaacctgg ctactgtggt gtgagcgcgg ggtgatgagc
    48241 cgtctgcagg cgctctatct gcgcgagcag ggctttaaca atgtgaaggt atatcgcccg
    48301 taatttgtgg ttgtaacgtc gcatctggtc agatgcgacg cttaccgcat ccgacactac
    48361 tcgtaataat tataaatccc tgccgccatc accagttgtg atgccacttc atgggctttc
    48421 tcgcgcccaa cctgcaggtc gataattttc agaccaaagt cgatagctgt ccccggcccc
    48481 tggctggtca gcaattttac ccgtgcatcc cagacgacgc gcttgtcctg ccattgttca
    48541 gcgggaattt tgtctttcag cgtcgggaag ccggtcatat taccaatcgg gaagatatcg
    48601 tgcggcacca gcacggtggc tggcgcggcg caaatagccg cgacgatacg cccggaacgg
    48661 tggaactgtt taacggtttc aaccagcaga gtgctatcgc gaaaacactc tgcgccttta
    48721 atgccaccag gcagtacgat cacgtcatat tcgccatcag ccacctcgac cagcggcgca
    48781 tccgccagca gcttcacgcc gcgcgagcag gtaattgcca ggttgccatc gctggctacg
    48841 ctggcagtgg tgactttgat accgccgcga accaagaggt cgatcgtggt gacggcttca
    48901 gtctcttcac taccaggggc gaggcaaacc agtgccgatg cgctcatatt cactctcctt
    48961 tctttttacc atttcaaaca ggcgggtgtt ttccggtacg gcaatcccat gcgcgcgggc
    49021 gcggcgtaag agaaaaccat tgatatagtc gatttcggtg tggcgcagcg cgcggatatc
    49081 ctgcaacatc gacgagatat tttccgctgt ggcatcaatc acctgcatca cgtaatcacg
    49141 caaatcttcc gctgaagtat gatgcccttc gcgttcgatc actgccgcga cttcttcgca
    49201 tatttgcata atttcttgcg gatgatgacg taattcaccg ttcgggcaat tccagatggc
    49261 ggtcagtgga ttaatcacgc agttgactgc cagcttgcgc cacagctcgg cgcgaatatt
    49321 gttatgccag gcaacgtcag gcaacacggt ttgtaaaata tccgccagat aactgtaatc
    49381 gccatcctgt tgccgtgccg gaccaatatg cgtgataccg tttgccacat gaataatgac
    49441 attgccgtcg cggcgggcgg catgggtggt ggtgcccatc agtaatggct gctgaatatt
    49501 ttgcaactct tcgatggtgc ccatgccgtt gtgaattaac agtattggcg tggttacagg
    49561 cagtgtggac gcgaggcttt tgacggcatc ggaaacctgc catgctttca gcgtcaccag
    49621 gagcagatcg ctggtggcga gaaaatcggg atcgttggcg gtcagcgatt cgttaaatat
    49681 cgaaccatct gtctcaacca gattcgcact acaataaggt tgcggtacgc gcagccagcc
    49741 ctgaacttca tgaccctgtt tgcaaagtgc tgtaagccat aattgcccta aggcaccgca
    49801 tcccaatacg gtaattttca ttgttcctcc tcacccgcaa ccactccggg tgttcaataa
    49861 ggctatccct taattgtgca tgctgttgcg actatgcaca attaagggat acgtcctggt
    49921 gcaggactgt cggttattta actttgcggg tattatgctt cgcatcaaaa atgaagggag
    49981 aggaaaagat gccatctttc gatattgtct ctgaagttga tcttcaggaa gcacgtaacg
    50041 cggtcgataa cgcgagccgc gaagtggagt cccgttttga cttccgtaac gttgaagcct
    50101 catttgagct gaacgacgcc agcaaaacca tcaaagtgtt gagcgagtcc gatttccagg
    50161 tcaatcagtt gctggatatt ctgcgtgcca agctgctgaa gcgcggcatt gaaggcagtt
    50221 cactggatgt accggaaaat atcgttcata gcggtaaaac ctggtttgtg gaagcgaaac
    50281 tgaagcaggg cattgagagc gcgacccaga aaaaaatcgt caagatgatc aaagacagca
    50341 aactgaaagt gcaggcgcaa attcagggcg atgagatccg cgtgactggc aaatctcgtg
    50401 atgatttgca ggctgtcatg gcgatggtgc gcggtggcga tctgggtcag ccgttccagt
    50461 tcaaaaactt ccgcgattaa tcgcgacaac ctgcgctttg ttcatgtcag atgcggcatg
    50521 aacgcctggt tcggcctaca aaggcttgta aatcaggagc ttagtaggcc tgatgagcgt
    50581 agcgcagcag gcaatttcgc ctcgctttta tgcctggcga attgcctgtt caacatcaaa
    50641 gcgattcgtc actttgctgt cgattttcac ataagctgaa tgttcttctt ctgcaatcaa
    50701 cacttctttg atgccttcag tttctagcaa acgcactttt aacgcctcgt ttgcggcaat
    50761 gttcgccggg atttcaatgc gcaaactgct gacatacgcc ggttctttca tggtactggc
    50821 gactgccagc cacactgcgg ccagcattgc gccagcgaga aatacgccct gaccgtcaaa
    50881 catgccgtca atccagccgc ccagtgaacc gccaatcgcc acgccaagaa actggctggt
    50941 ggagtaaaca cccatcgctg tacctttgta acctgctggc gactctttac tgataagtga
    51001 aggcagaagg gcttccatca aattaaacgc tacaaagaaa agctgcacgc cgaccaccag
    51061 ttgccagaac tgcgtttgcg cgttccacaa cacaatttcc gcaaccacga tcaatccgac
    51121 gcagaagaca aagacttgct tcattttgcg cttaacttca gcgtagataa tgaaaggcac
    51181 gaccgagcca aaggcgatta gcattgtcgc cagatagacc ttccagtgtt cagccgccgg
    51241 gaaccctgca tcagccagtt gtccgggcag ggcaacaaac gtcgacatca gcaaaatatg
    51301 cagacacata atgccaaagt tgagtttcag cagccgcggt tccgccagca ctttactgaa
    51361 actgcctttc accattccgg actcacgatt aagtacgtga gtgctactgt tgggcacaac
    51421 ccaaatggtc aacgcaatgc cggtcgttgc cagaatagcg atcatccaga acagcgcgtg
    51481 cagcccaagt ttgtgagtga tgatcgggcc aagcaccatc gcaatggcaa aggtaatgcc
    51541 aaagctcacg ccgataaacg ccattgcttt ggtgcggttt tgttcgcgcg tgagatcgga
    51601 aagcagcgcc ataacggcag cggcaatcgc accggagcct tgtagcgccc ggcctagaat
    51661 aattccccag atggagtcag agagcgcagc gataacgcta ccggcggcaa acaccgccag
    51721 cccaccgaca attaatggtt tgcgaccaat acggtcggaa agcaggccaa acggaatctg
    51781 aaaaacggcc tgagtcagac cataaatacc aatggcaata ccgattaatg cttcgctggc
    51841 accttgcaga gccatgccat acgtggtcag aaccggcaga accataaaca tgcccagcat
    51901 gcgcaacgag aatacggtcc ctaaacccca ggtcgcgcgc ctctcacctg gcgtcatttt
    51961 ataatcgttc attaccacct ctgttttaaa ttcgcgacta gtgtaaagcg gcaaacgaat
    52021 ggggtaaaca tgcggatttt ttagtaaata tttcgagagg gatatgtttc taatgctaag
    52081 aaaaaaggtg ccgtagcacc tttttaatag agaggttttg ttaccacaca gcagccagca
    52141 gcgtatgcga gtccggtacc ataaaatcaa cggacatcat caccgagagg gcagtgatgg
    52201 cgatgataga gaagccgaac agcttgcgcg cccagattct gtcatcagca actttataac
    52261 cgcgcagagc catacctaac caccagacgc taaccgccgc ggcgaccacc agatatttat
    52321 atccagcgta accgccaaga gagagcatca gcgtggcaac ggcaaaggcg atgatataca
    52381 gcgtgatgtg attcttcgcc accgaaatgc cttttaccac tggcaatacc ggaatgtttg
    52441 ccgcctggta atccttaaag cggaaaatgg cgatggcata ggagtgaggc atctgccaca
    52501 ggctgaagat agccagcagg atcgctgcgc cgctatcgaa ctcgccggtt actgcacagt
    52561 agccaatcac cggcggcgca gcgccggaga gcgaaccaat caatgtgccg tagactgagt
    52621 ggcgtttcat gtacaggcta tagacgccga cataaaccac aaagcccatc acccccagcc
    52681 agcaggccag cggattcgcg ccaaaccaca gcagcataaa gccagcaata cccagcaagg
    52741 tggcgtacac cagcgagaca gcaggagaga tcaggccttt aaccagcacc cgattcttcg
    52801 tcctttccat ctttctgtcg atatccctgt cgatgtagtt gttaaacaca caacccgacg
    52861 ccacaaccag tgacacccca accagcgtgt agataaacag gggataatca atgctgccct
    52921 ttgaggccag caggaatccc ccaatcaccg agatcaggtt gccaaagatg atgcctggtt
    52981 tcgttacttg caggtattgc ttaaacatca taaccgccgc tcttagtgca tcatcatgtt
    53041 gtagttgagg ttccacataa tccagatgga gcctacaacc aggatagcga tgattagcac
    53101 ggtgaagaca aacgccgtca tgttccagcc ttcatctgat ttggtattca tgtgcaggaa
    53161 gcacaccaga tgcaccagaa cctgtaccac tgccattgcc aggattgttc ccagaattac
    53221 ggccggagag gcagcccctg tcatcaccat ccagaacgga atcaccgtca gaatgatcga
    53281 caggataaag cctgtcatgt aggtttttac gctgccatgg gacgcgccgc tgtgatcggt
    53341 agaatgactc attacatcgc ccccatcaga taaacaacag tgaacacaca gatccaaacc
    53401 acatccagga agtgccagaa caggctcagg cacatgatgc gggtacggtt agtgctggtc
    53461 aggccgcgac gagcgatttg taccatcagc accgccatcc agataagacc ggaagtgacg
    53521 tgcagaccgt gcgtgccgac cagcgcaaag aacgctgaca ggaagccgct gcgatccgga
    53581 cccatgccgt taacaatcag gtgatggaat tcgtagattt ccatcccgat aaatccggca
    53641 ccaaacaaac aggtcaacgc cagccaggag ataacctggc ttttgttgtt tttgtacatg
    53701 gcgatagccg ccatgccgta ggtgatggag ctgaacaaca gcaagaaagt ttcaaccaga
    53761 acgaacggca gttcgaaaat gtccttacct gtcgggccgc ttgcggtgcc gttcaccaga
    53821 acggcatagg tagcaaacaa gattgagaac agaatgcagt cgctcatcag gtagatccaa
    53881 aatccgaaga ttttggttcc gcctgcatcg tggtgcccgt gttcgtgcgc gtgggcagtc
    53941 gcgtgcgtca aagtatcagt tgccattttt cagccctgcc ttagtaatct catcgaaatg
    54001 ctggttttcc agtttttcga tttctgccac cggcacgtag taatccacgt cctcgtcgaa
    54061 gcttttcacg atccaggtga tgatcatgcc tgcgaagcca acaatcgcca gccaccagat
    54121 atgccagatc atggcgaaac cgaagatggt ggagaaagct gcaatgacga tacctgcacc
    54181 gctgtttttc ggcatatgaa tttcttcata gtggtcaggc tttttatacg cttcgccttt
    54241 ctctttcatt tcccagaatg catcacgctc gtgaacgtgc ggcacaacgg caaagttata
    54301 gaacggaggc ggggaagagt ttgcccactc cagcgtacgg ccaccccacg ggtcgccagt
    54361 caggtcacgg ttctggtcgc ggtcgcgaat agaaacgtac atctgaataa cgaggcagag
    54421 aatacccagc gcaatcagta ctgcaccgct agctgcaatc atcagcatgg tgtggaactg
    54481 cgggtcaatc tgctggctca aacgacgggt catgcccatg aagcccagtg catacagcgg
    54541 cataaaggca acgaagaagc cgatgatcca gaaccagaac gcgcgtttac cccaggtttc
    54601 attcagtttg aaaccgaacg ctttaggcca ccagtagatc atccctgcga agcagccgaa
    54661 gaccacgccg ccgatgataa cgttatggaa gtgcgcaatc aggaacaggc tgttatgcag
    54721 aacgaagtcc gcgcccggta ctgccagcag cacgccagtc atcccgccca ccgagaaagt
    54781 gacgataaaa ccgatggtcc acagcatcgc agaatggaac acgatacggc cctgatacat
    54841 ggtgaacagc cagttgaaga tcttcacccc ggtcgggatg gcgataatca ttgtggtgat
    54901 accaaagaag gcgtttacgt tcgcgcccgc acccatcgta aagaagtggt gcagccaaac
    54961 gatgaacgac agcacggtga tacagacggt tgcccatacc agcgaggtat aaccaaacag
    55021 acgtttacgc gagaaggttg ccgcaatttc ggagaacaca ccgaaaacag gcaggatcag
    55081 gatgtaaact tccgggtggc cccaggccca aatcaggttg atgtacatca tcatgttgcc
    55141 acccatatcg ttggtaaaga aatgggtgcc cagatagcga tccagggtca acaacgcgac
    55201 ggtaaccgtc agaattggga aggaagcaat aatcagtacg ttcgcgcaca gtgatgccca
    55261 ggtaaatact ggcatcttga acatggtcat gcccggtgcg cgcatcttca gaatggtaac
    55321 gaagaagttg ataccggtaa gcgtcgtacc tataccggat agctggagac tccatatcca
    55381 gtaatcaaca ccgactcccg gactgtactc tattcccgat agcggtggat aggccagcca
    55441 gccggtctgc gcaaattcgc ccacgccgag agaaacgtta accagaatca caccaacaac
    55501 agtaaaccag aagcttaagt tgttgaggaa cgggaacgca acgtcacgcg cgccgatctg
    55561 cagcggaacc accaggttca tcagaccgat aacgaaaggc atcgccacga agaagatcat
    55621 aatcacgccg tgcgcggtga agatctgatc gtagtggtga ggtggcagga agcccgcttc
    55681 gcccgccgag gcaagagcct gctggctacg catcataatg gcgtcagcaa aaccacgcag
    55741 caacatcaca atcgccacga tgatatacat gataccgagg cgtttatggt cgacggaggt
    55801 cagccactct ttccacaggt aggtccactt accgaagtaa gtgatcaggc caacgagcgc
    55861 cagacctccc aaaataatgc cagcgatcgt aaccatgacg ataggttcat ggaacgggac
    55921 tgcatcaagt gataattttc cgaacatctt tattcttcct caaccccttt aatgggcgga
    55981 ttccgcgtgg ctcatgtcca tgccttccat accttcgtgt gcgctgtgct caccttctgg
    56041 ctgggtcatg tccatgctct taccgtgagc cataaacttg ttaatcacat cagcaaacaa
    56101 gtctggtttc acgttggaga aatattccac ctggttgtat tcgctaggcg cggccagttt
    56161 ttcgaacgca gccatgtcag acatggtgtt cggcgactgc ttcgcttttg cgacccactg
    56221 gtcgaattcg gcgcgatccg gtgttgcaat agctttgaac ttcatgcctg agaagcccgg
    56281 gccgctgtag ctggcggaga taccgtcata agtaccgggt tcgttggcga tcagatgcag
    56341 gcgagtctgc ataccagcca tggcataaat ctggctaccc agacgcggaa tgaagaagga
    56401 gttcatcacg gagttggagg tcactttgaa gtacaccgga gtgttcgccg ggaaagcgat
    56461 ttcattcacg gtagcaatgc cctgttccgg gtagatgaag aaccatttcc agtccatgga
    56521 aaccacttcg atggtaatgg gcttctcgtc gtgtgccagc ggcttgctag gctcaagagc
    56581 gtgagtggtt ttccaggtca gtaccgcaag gaagatgatg attaagatag gtaccgtcca
    56641 gaccacagct tccactttat tggagtgtga ccagttcggg ctgtacttag catctttatt
    56701 gctcgcacga tacttccagg cgaaaccaac agccatcaag attgcgggaa taacgacaat
    56761 caacatcagg ccaaatgccg tcagtatcag tgaacgttgc tccagaccaa tctgtccttt
    56821 gggatctaac agcgcagaat tacagccact gagcaataca gtgcctgcaa ataatgacaa
    56881 ccatcccaaa cttttattgt atttcctgag tctcatttaa cgacctcaat tccacgggat
    56941 ctggtggcgt ttaaagtgtg tgggcatttt atgggaaggt tacattactg taaacatgat
    57001 taaattcctg ttacttggat ttgactgtca ggtcacatat gttgcaaaac atatcaagtt
    57061 gattttaaga agctgttgca aaagggcgtt ataacgaaag gggagtgcag aaggagtttg
    57121 gacgggcaat tggtataacc aatctggaat aaaataattg tttaacaaat aattatcatt
    57181 atggtgacaa ttgggtgggg ggaaaataaa gactcgttag ctgaatcgtg taagaaaaaa
    57241 tagaattcat aaattgcgtc aataatttcc aaacgctaag ccgcacaaaa gaacaaatat
    57301 tattaagcga tactgatgtt tatttagccg taataattac ggcgagtgat tactacagct
    57361 aaataatatt tacagattac gtcagatgcg tttttcgtag agccagataa tccagcaaac
    57421 caccaagcac gacgccagaa agggcgacta aaaccccgac ttccagcaga gcaggcagga
    57481 aagagaagtg cgtcaaatcc agcgcgtcca tcgtcaacag cagtaaccac acggccaaca
    57541 ggctgacgcc cgccgccagt gtccacatgg caaaggcata acctgccgga tattcggtac
    57601 gggagataaa gttgtcattt actcgtgtat attcaagcgt ctggcggcaa accagcagca
    57661 aaataagccc cggtacggca gcggcgacgg agaatagata gaatgtcgac cagccgtgtg
    57721 cttcaacaaa ccaacccgcc acggggccga cataaactcg tcctacagcg gaaagcgctg
    57781 agagcagggc aaattgagta gcggaaaatg acttattaca cagcgtcatt aacagcgcga
    57841 caaaggctga tgtgcccatc ccgccacaga ggttttcgaa aaagacggct gcgcccatgc
    57901 tgtagagatg cttatcagta atcgacagca gccagtaacc agcgttagac gcaccttgta
    57961 aaatgccgaa aatcagcagc gcccggaaca gcgacaggcg ctgcatcaaa atcccaccgt
    58021 acaatgcgcc cacaatggtc gccagtaagc caagcgtttt gttaaccacg cctacttcac
    58081 ccgcatcaaa cccgacgccg cgaatcaaaa acgtggttgt caggctcatg gcgaatgcgt
    58141 cgcccagctt atacagcacg ataagaagca aaataagcca ggcattattg cgaccaaaga
    58201 aatctcgcag aggtgcaaca accgcttgtt ccagcgtttt tggcacagga atggtgtcgg
    58261 tcggttctgg tgcaagcaac gtcgcgataa tacaagggat caacagcgcc gccatcaacc
    58321 agtacatgcc ctgccagccc agccatttat ctgccagcca cagggctaag ccgccggaaa
    58381 ccagcatccc taaacggtaa cccagcacgc tgattgccgc gcccgcacca cgttcttctg
    58441 ccgggagcac atcggttttc cacgcatcga agacaatatc ctgggaggcc gagcaaaaag
    58501 cgatcaccac cgccagtgcc gccatccagc ggagttgggt gccaggttcg agaaaaccca
    58561 tcgccgcaat ggcgactaat aacaggattt gcgtggcgag cagccaaccg cgccgccgcc
    58621 caaaaaatgg gggcgtgtag cggtccatca gcggtgacca gaggaattta aaaacgtaag
    58681 cctggcctac cagagagaag aaaccaatgg ttttgagatc aatattctcg accgtcatcc
    58741 aggcctgtaa ggtaccggat gtcagggcga gcggtagccc ggaagcaaaa cccaggatca
    58801 gcaatatggc tgaacgcggc tgttgaaaaa tacgtaaata ttgactggac atgggcgtct
    58861 acaggcccgg tttgcaccgg gccagagggc agaaattaac gcgcgttctg cttgatgaat
    58921 tcgtgaatgc tggtgtcctg agacatatca gcgatggtat cggtcagcac actgttaacc
    58981 gcatcggcga tatttttgtt ggaggcctgg aacgcacctt caacgttgta gctggcacga
    59041 tagtttttgg ttattttgtt gccattctgc gcggtagcga tgatggcgat atccgctttg
    59101 gtagcgatgt tgtagcgcac gttgccctgg gacacgtcag catacagttg gctaacgatg
    59161 atttgcagat taaccgggcc attcggacca accatgtaac cacgcgcggt catctgtttt
    59221 tccagcactt cttgcagcag gaaacgcaga tcgcgggagg cggccagggt aacgatttga
    59281 ttatcgcggg tgacttttgc cagcgcctga tcggtacgct gatcggcacc attaatgctt
    59341 acggtgacgc ccatcaggct tggatcctgc tgtggcagtg taatcgtcgg ggaaacttca
    59401 atagttgttg gcggttttgc gcatcctgca agcataaaca gagcaactaa cgggaagagg
    59461 atttttttga acatgttcgg gctctcagag actcttaagc gtgtttggta aaaattcccg
    59521 ccatcataac attgccaacg gcgaggggaa gtgggtaagg catgtaaatt catcatgttg
    59581 acgaaataat cacccctggt aaaagaaacg ctgatgcgag gcctgtgttt caatctttaa
    59641 atcagtaaac ttcatacgct tgacggaaaa accaggacga aacctaaata tttgttgtta
    59701 agctgcaatg gaaacggtaa aagcggctag tatttaaagg gatggatgac atctcagcgt
    59761 tgtcggagga gatatttcat gatgatacgt gagcggatag aagaaaaatt aagggcggcg
    59821 ttccaacccg tattcctcga agtagtggat gaaagctatc gtcacaatgt cccagccggc
    59881 tctgaaagcc attttaaagt tgtgctggtc agcgatcgtt ttacgggtga acgttttctg
    59941 aatcgtcatc gaatgattta cagtacttta gcggaggaac tctctactac cgttcatgcg
    60001 ctggctctgc atacttacac tattaaggag tgggaagggt tgcaggacac cgtctttgcc
    60061 tctcctccct gtcgtggagc aggaagcatc gcgtaaaaac gcatttgcaa ctgtcggcgc
    60121 tttttcagta tgttgctaaa gattttatga aaaacggcct gcgggccgtt ttgttttgtc
    60181 tggattttgc gctttttgcc cagcattcag acgaaaattg cccgggaatt gtgaaaaaat
    60241 acgcgacagc gcgcaataac cgttctcgac tcataaaagt gatgccgcta taatgccgcg
    60301 tcctatttga atgctttcgg gatgattctg gtaacaggga atgtgattga ttataagaac
    60361 atcccggttc cgcgaagcca acaacctgtg cttgcggggt aagagttgac cgagcactgt
    60421 gattttttga ggtaacaaga tgcaagtttc agttgaaacc actcaaggcc ttggccgccg
    60481 tgtaacgatt actatcgctg ctgacagcat cgagaccgct gttaaaagcg agctggtcaa
    60541 cgttgcgaaa aaagtacgta ttgacggctt ccgcaaaggc aaagtgccaa tgaatatcgt
    60601 tgctcagcgt tatggcgcgt ctgtacgcca ggacgttctg ggtgacctga tgagccgtaa
    60661 cttcattgac gccatcatta aagaaaaaat caatccggct ggcgcaccga cttatgttcc
    60721 gggcgaatac aagctgggtg aagacttcac ttactctgta gagtttgaag tttatccgga
    60781 agttgaactg cagggtctgg aagcgatcga agttgaaaaa ccgatcgttg aagtgaccga
    60841 cgctgacgtt gacggcatgc tggatactct gcgtaaacag caggcgacct ggaaagaaaa
    60901 agacagcgct gttgaagcag aagaccgcgt aaccatcgac ttcaccggtt ctgtagacag
    60961 cgaagagttc gaaggcggta aagcgtctga tttcgtactg gcgatgggcc agggtcgtat
    61021 gatcccgggc tttgaagacg gtatcaaagg ccacaaagct ggcgaagagt tcaccatcga
    61081 cgtgaccttc ccggaagaat accacgcaga aaacctgaaa ggtaaagcag cgaaattcgc
    61141 tatcaacctg aagaaagttg aagagcgtga actgccggaa ctgactgcag aattcatcaa
    61201 acgtttcggc gttgaagatg gttccgtaga aggtctgcgc gctgaagtgc gtaaaaacat
    61261 ggagcgcgag ctgaagagcg ccatccgtaa ccgcgttaag tctcaggcga tcgaaggtct
    61321 ggtaaaagct aacgacatcg acgtaccggc tgcgctgatc gacagcgaaa tcgacgttct
    61381 gcgtcgccag gctgcacagc gtttcggtgg caacgaaaaa caagctctgg aactgccgcg
    61441 cgaactgttc gaagaacagg ctaaacgccg cgtagttgtt ggcctgctgc tgggcgaagt
    61501 tatccgcacc aacgagctga aagctgacga agagcgcgtg aaaggcctga tcgaagagat
    61561 ggcttctgcg tacgaagatc cgaaagaagt tatcgagttc tacagcaaaa acaaagaact
    61621 gatggacaac atgcgcaatg ttgctctgga agaacaggct gttgaagctg tactggcgaa
    61681 agcgaaagtg actgaaaaag aaaccacttt caacgagctg atgaaccagc aggcgtaatt
    61741 tacgcagcat aacgcgctaa attcgcacaa aggcccgtca ccgccaggtg gtgggctttt
    61801 tttgtcatga attttgcatg gaaccgtgcg aaaagcctct ttcggtgtta gcgtaacaac
    61861 aaaagattgt tatgcttgaa atatggtgat gccgtaccca taacacaggg actagctgat
    61921 aatccgtcca taaggttaca atcggtacag caggtttttt caattttatc caggagacgg
    61981 aaatgtcata cagcggcgaa cgagataact ttgcacccca tatggcgctg gtgccgatgg
    62041 tcattgaaca gacctcacgc ggtgagcgct cttttgatat ctattctcgt ctacttaagg
    62101 aacgcgtcat ttttctgact ggccaggttg aagaccacat ggctaacctg attgtggcgc
    62161 agatgctgtt cctggaagcg gaaaacccag aaaaagatat ctatctgtac attaactccc
    62221 caggcggggt gatcactgcc gggatgtcta tctatgacac catgcagttt atcaagcctg
    62281 atgtcagcac catctgtatg ggccaggcgg cctcgatggg cgctttcttg ctgaccgcag
    62341 gggcaaaagg taaacgtttt tgcctgccga attcgcgcgt gatgattcac caaccgttgg
    62401 gcggctacca gggccaggcg accgatatcg aaattcatgc ccgtgaaatt ctgaaagtta
    62461 aagggcgcat gaatgaactt atggcgcttc atacgggtca atcattagaa cagattgaac
    62521 gtgataccga gcgcgatcgc ttcctttccg cccctgaagc ggtggaatac ggtctggtcg
    62581 attcgattct gacccatcgt aattgatgcc agaggcgcaa ctgtgccgct atacttatcc
    62641 agggcggcac aacgctgtaa gcggcttgcg cctgagaatg gcatttgcgt cgtcgtgtgc
    62701 ggcacaaaga acaaagaaga ggttttgacc catgacagat aaacgcaaag atggctcagg
    62761 caaattgctg tattgctctt tttgcggcaa aagccagcat gaagtgcgca agctgattgc
    62821 cggtccatcc gtgtatatct gcgacgaatg tgttgattta tgtaacgaca tcattcgcga
    62881 agagattaaa gaagttgcac cgcatcgtga acgcagtgcg ctaccgacgc cgcatgaaat
    62941 tcgcaaccac ctggacgatt acgttatcgg ccaggaacag gcgaaaaaag tgctggcggt
    63001 cgcggtatac aaccattaca aacgtctgcg caacggcgat accagcaatg gtgtcgagtt
    63061 gggcaaaagt aacattctgc tgatcggtcc gaccggttcc ggtaaaacgc tgctggctga
    63121 aacgctggcg cgcctgctgg atgttccgtt caccatggcc gacgcgacta cactgaccga
    63181 agccggttat gtgggtgaag acgttgaaaa catcattcag aagctgttgc agaaatgcga
    63241 ctacgatgtc cagaaagcac agcgtggtat tgtctacatc gatgaaatcg acaagatttc
    63301 tcgtaagtcg gacaacccgt ctattacccg tgacgtttcc ggtgaaggcg tacagcaggc
    63361 actgttgaaa ctgatcgaag gtactgttgc tgccgttcca ccgcagggcg ggcgtaagca
    63421 tccgcagcag gaatttttgc aggttgatac ctccaagatc ctgtttattt gtggcggtgc
    63481 gtttgccggt ctggataaag tgatttccca ccgtgtagaa accggctccg gcattggttt
    63541 tggcgcgacg gtaaaagcga agtccgacaa agcaagcgaa ggcgagctgc tggcgcaggt
    63601 tgaaccggaa gatctgatca agtttggtct tatccctgag tttattggtc gtctgccggt
    63661 tgtcgcaacg ttgaatgaac tgagcgaaga agctctgatt cagatcctca aagagccgaa
    63721 aaacgccctg accaagcagt atcaggcgct gtttaatctg gaaggcgtgg atctggaatt
    63781 ccgtgacgag gcgctggatg ctatcgctaa gaaagcgatg gcgcgtaaaa ccggtgcccg
    63841 tggcctgcgt tccatcgtag aagccgcact gctcgatacc atgtacgatc tgccgtccat
    63901 ggaagatgtc gaaaaagtgg ttatcgacga gtcggtaatt gatggtcaaa gcaaaccgtt
    63961 gctgatttat ggtaagccgg aagcgcaaca ggcatctggt gaataattaa ccattcccat
    64021 acaattagtt aaccaaaaag gggggatttt atctcccctt taatttttcc tctattctcg
    64081 gcgttgaatg tgggggaaac atccccatat actgacgtac atgttaatag atggcgtgaa
    64141 gcacagtcgt gtcatctgat tacctggcgg aaattaaact aagagagagc tctatgaatc
    64201 ctgagcgttc tgaacgcatt gaaatccccg tattgccgct gcgcgatgtg gtggtttatc
    64261 cgcacatggt cattccctta tttgtcgggc gggaaaaatc tatccgttgt ctggaagcgg
    64321 cgatggacca tgataaaaaa attatgctgg tcgcgcagaa agaagcttca acggatgagc
    64381 cgggtgtaaa cgatcttttc accgtcggga ccgtggcctc tatattgcag atgctgaaac
    64441 tgcctgacgg caccgtcaaa gtgctggtcg aggggttaca gcgcgcgcgt atttctgcgc
    64501 tctctgacaa tggcgaacac ttttctgcga aggcggagta tctggagtcg ccgaccattg
    64561 atgagcggga acaggaagtg ctggtgcgta ctgcaatcag ccagttcgaa ggctacatca
    64621 agctgaacaa aaaaatccca ccagaagtgc tgacgtcgct gaatagcatc gacgatccgg
    64681 cgcgtctggc ggataccatt gctgcacata tgccactgaa actggctgac aaacagtccg
    64741 ttctggagat gtccgacgtt aacgaacgtc tggaatatct gatggcaatg atggaatcgg
    64801 aaatcgatct gctgcaggtt gagaaacgca ttcgcaaccg cgttaaaaag cagatggaga
    64861 aatcccagcg tgagtactat ctgaacgagc aaatgaaagc tattcagaaa gaactcggtg
    64921 aaatggacga cgcgccggac gaaaacgaag ccctgaagcg caaaatcgac gcggcgaaga
    64981 tgccgaaaga ggcaaaagag aaagcggaag cagagttgca gaagctgaaa atgatgtctc
    65041 cgatgtcggc agaagcgacc gtagtgcgtg gttatatcga ctggatggta caggtaccgt
    65101 ggaatgcgcg cagcaaggtc aaaaaagacc tgcgtcaggc gcaggaaatc cttgataccg
    65161 accattatgg tctggagcgc gtgaaagatc gcatccttga gtaccttgcg gttcaaagcc
    65221 gtgtcaacaa aatcaaggga ccgatcctct gcctggtagg gccgccgggg gtaggtaaaa
    65281 cctctcttgg tcagtccatt gccaaagcca ccgggcgtaa atatgtccgt atggcgctgg
    65341 gcggcgtgcg tgatgaagcg gaaatccgtg gtcaccgccg tacttacatc ggttctatgc
    65401 cgggtaaact gatccagaaa atggcgaaag tgggcgtgaa aaacccgctg ttcctgctcg
    65461 atgagatcga caaaatgtct tctgacatgc gaggcgatcc ggcctctgca ctgcttgaag
    65521 tgctggatcc agagcagaac gtagcgttca gcgaccacta cctggaagtg gattacgatc
    65581 tcagcgacgt gatgtttgtc gcgacgtcga actccatgaa cattccggca ccgctgctgg
    65641 atcgtatgga agtgattcgc ctctccggtt ataccgaaga tgaaaaactg aacatcgcca
    65701 aacgtcacct gctgccgaag cagattgaac gtaatgcact gaaaaaaggt gagctgaccg
    65761 tcgacgatag cgccattatc ggcattattc gttactacac ccgtgaggcg ggcgtgcgtg
    65821 gtctggagcg tgaaatctcc aaactgtgcc gcaaagcggt taagcagtta ctgctcgata
    65881 agtcattaaa acatatcgaa attaacggcg ataacctgca tgactacctc ggtgttcagc
    65941 gtttcgacta tggtcgcgct gataacgaaa actgtgtcgg tcaggtaacc ggtctggcgt
    66001 ggacggaagt gggcggtgac ttgctgacca ttgaaaccgc atgtgttccg ggtaaaggca
    66061 aactgaccta taccggttcg ctcggcgaag tgatgcagga gtctattcag gcggcgttaa
    66121 cggtggttcg tgcgcgtgcg gaaaaactgg ggatcaaccc tgatttttac gaaaaacgtg
    66181 acatccacgt ccacgtaccg gaaggtgcga cgccgaaaga tggtccgagt gccggtattg
    66241 ctatgtgcac cgcgctggtt tcttgcctga ccggtaaccc ggttcgtgcc gatgtggcaa
    66301 tgaccggtga gatcactctg cgtggtcagg tactgccgat cggtggtttg aaagaaaaac
    66361 tcctggcagc gcatcgcggc gggattaaaa cagtgctaat tccgttcgaa aataaacgcg
    66421 atctggaaga gattcctgac aacgtaattg ccgatctgga cattcatcct gtgaagcgca
    66481 ttgaggaagt tctgactctg gcgctgcaaa atgaaccgtc tggcatgcag gttgtgactg
    66541 caaaatagtg acctcgcgca aaatgcacta ataaaaacag ggctggcagg ctaattcggg
    66601 cttgccagcc tttttttgtc tcgctaagtt agatggcgga tcgggcttgc ccttattaag
    66661 gggtgttgta aggggatggc tggcctgata taactgctgc gcgttcgtac cttgaaggat
    66721 tcaagtgcga tataaattat aaagaggaag agaagagtga ataaatctca attgatcgac
    66781 aagattgctg caggggctga tatctctaaa gctgcggctg gccgtgcgtt agatgctatt
    66841 attgcttccg taactgaatc tctgaaagaa ggggatgatg tagcactggt aggttttggt
    66901 acttttgccg ttaaagagcg tgctgcccgt actggccgca acccgcagac cggtaaagag
    66961 atcaccatcg ctgctgctaa agtaccgagc ttccgtgcag gtaaagcact gaaagacgcg
    67021 gtaaactaag cgttgtcccc ggtggggatg tgacgaagtt caagggcgca tctactgatg
    67081 tgcctttttt atttgtattc ggtgactttc tgcgtcttgt gggctgacaa ttgcccccgt
    67141 ttcttgtcac aataggcctt tgcgcgcatc gatacgttgc gtgaggtaca cagtcatcta
    67201 cagcggagtg ttgttacacc atgatggaca gcttacgcac ggctgcaaac agtctcgtgc
    67261 tcaagattat tttcggtatc attatcgtgt cgttcatatt gaccggcgtg agtggttacc
    67321 tgattggcgg aggcaataac tacgccgcaa aagtgaatga ccaggaaatc agccgtgggc
    67381 agttcgagaa cgcctttaac agcgagcgta atcgcatgca gcaacagctg ggcgatcaat
    67441 actccgagct ggcagcgaat gaaggctata tgaaaaccct gcgtcaacag gtgctgaatc
    67501 gtctgatcga cgaggcgctg ttggatcagt acgctcgtga gctgaaactg ggtatcagtg
    67561 atgagcaggt taaacaggcg attttcgcga ccccagcctt ccaggttgac ggcaaatttg
    67621 ataacagccg ctataacggt atcctcaacc agatggggat gaccgccgat cagtacgccc
    67681 aggcgctgcg taaccagctc actacccaac agctgattaa cggtgttgcc ggtaccgatt
    67741 ttatgctgaa aggtgaaacc gacgagctgg cggcactggt cgcgcaacaa cgcgtggtgc
    67801 gtgaggcgac tatcgatgtt aacgcgctgg cggcgaagca gcctgtgacc gaacaggaga
    67861 ttgccagcta ctacgaacaa aacaaaaaca atttcatgac gccggaacaa ttccgcgtga
    67921 gttacatcaa gctggatgcc gcaacgatgc agcaaccggt tagcgatgcg gatatccaga
    67981 gctactacga tcagcatcag gatcaattca cccagccgca gcgtacccgc tacagcatca
    68041 tccagaccaa aactgaagat gaagcgaaag cggtacttga tgagctgaat aaaggcggtg
    68101 attttgctgc attagccaaa gaaaaatctg ccgatattat ctctgcccgt aacggcggcg
    68161 atatgggttg gttagaagat gccactatcc ccgacgaact gaaaaatgct ggtctgaaag
    68221 aaaaaggcca actgtctggt gtcatcaaat cttcggtcgg tttcctgatt gtacgtctgg
    68281 acgacattca gccagcgaaa gtgaaatcgt tagacgaagt acgtgacgac attgcggcga
    68341 aagtgaaaca cgaaaaagcc ctcgatgcgt actatgcgct gcagcagaaa gtgagcgatg
    68401 cggcaagcaa cgacacagag tctctggccg gtgcagagca agctgccggc gttaaagcca
    68461 ctcagacggg ttggttcagc aaagataacc tgccggaaga gttgaacttc aagccggttg
    68521 ccgacgctat ctttaacggc ggtctggtag gtgaaaacgg cgcgccgggc atcaactctg
    68581 acatcatcac cgtagacggc gaccgtgcat tcgtgctgcg catcagcgag cacaaaccgg
    68641 aagcggtgaa accgttggca gatgttcagg aacaagttaa ggcactggtt cagcacaaca
    68701 aagctgaaca acaggcgaaa gtggatgctg agaaactgct ggttgatttg aaagccggca
    68761 aaggtgcgga agctatgcag gctgccggtc tgaaatttgg cgagccgaaa accttaagcc
    68821 gttccggtcg tgacccgatt agccaggcgg cgtttgcact gccactgcca gcgaaagaca
    68881 aaccgagcta cggtatggcg accgatatgc aaggtaatgt ggttctgctg gcgctggatg
    68941 aagtgaaaca aggttcaatg ccggaagatc agaaaaaagc gatggtgcag ggtatcaccc
    69001 agaacaacgc acaaatcgtc tttgaagctc tgatgagtaa cctgcgtaaa gaggcgaaaa
    69061 tcaaaattgg cgatgcgctg gaacagcaat aatcctgaag ccgcctcgca aaaaaatgcg
    69121 ttgcagctgt aacaagaaaa ggtcgctttc gcggcctttt ccatttctga acattgccat
    69181 ttgtttactg ttttcactgc cgttaaggtg attccactgt taacaaacaa ggagaaaaca
    69241 gtatgaaaca cggaattaaa gcactgctca ttaccctgtc cctggcctgt gccggaatgt
    69301 ctcatagcgc gctggcggca gcttctgtgg cgaaaccgac ggcggtagaa accaaagcgg
    69361 aagctcctgc agcacaaagt aaagcagcag taccggcgaa agccagtgac gaagaaggca
    69421 cccgggtcag cattaataat gccagcgcgg aagagctagc ccgcgcgatg aatggcgttg
    69481 gcctgaagaa agcgcaggcg attgtcagtt atcgcgaaga gtacggtccg tttaaaacag
    69541 tggaggatct aaagcaggtg ccggggatgg gcaattcgct ggtggaacgt aatctggcgg
    69601 tattaaccct gtaattaatt tgcatagtgg caattttttg ccagactgaa gaggtcatac
    69661 cagttatgac ctctgtactt ataacaacaa cgtaaggtta ttgcgctatg caaacacaaa
    69721 taaaagttcg tggatatcat ctcgacgttt accagcacgt caacaacgcc cgctaccttg
    69781 aatttctcga agaagcccgc tgggatgggt tggaaaatag cgacagtttt cagtggatga
    69841 cggcccataa catcgccttc gtcgtggtca atatcaatat taactatcgt cgcccagcgg
    69901 tattaagtga cctgttaact attaccagtc agttgcagca attaaacggt aaaagcggca
    69961 tcttaagcca ggtcattaca ctggagccgg aagggcaggt ggtagcggat gcgcttatta
    70021 cgtttgtttg tattgatctt aaaacgcaga aagcattagc tctggaaggg gaattgcgcg
    70081 aaaagctgga gcagatggtt aagtaaacgt tttgtggtgc cggatgctca agccgcatcc
    70141 ggcgacaccc ggaataatta cctcaacccg gttttctgct tcatcgctgc catcaccgtc
    70201 ggtttatcgg ccagataatg attcaaaccg ttggcgcgta aattacatgc cgcacaatga
    70261 ccgcaaccgt cgcctttaat gccgttatag caggtcaacg tttcgttacg gactaaatcc
    70321 agtttgccgt aataatctgc cagcgcccag gtttccgctt tatcaatcca catcagcggc
    70381 gtttcaaaac gaatatcttt cgccatgccc aaactgacgg catggtttag tgctttcaca
    70441 aactcatcgc ggcaatccgg gtagccggag aaatccgttt cacagacgcc ggtaattacg
    70501 gcttctgctt ttacctgata cgcatatatt gccgccagcg tcaggaacaa aatattacgc
    70561 cctgggacaa acgtattcgg gatgccatcg gcttcaggtt cataatcagg caccggaatg
    70621 ctgtcacgtg tcaggctgct gaccgccagc tcgttgagca gcgttacatc aagaacctta
    70681 tgcgcgcgtg ctcccagttt cagcgccagt tcgcgtgcca cgtcgatttc tgcgcgatgt
    70741 cgctgaccgt aatcgaacgt cacgcaatgg acttcatcat attgttgtaa tgcctgcacc
    70801 agacaggtgg tggaatcctg gcctccactg aacacaacga cagcacgttt catagataat
    70861 cctgcttgaa caataaaagc gttatggtaa cgcctgcgat taacccggac cagctattca
    70921 ttgcgacggc gcgggaagcc aggcttcggt aaattcaaac cagccgcgcg gtgtcagtcg
    70981 cacaccgttc acgccgggag gggcactaat gcgatagtga tagttgaaca gcggcgtcag
    71041 cgtcgcgtct gccattaact ggctaaaaac cgctttcagg gcattaaatc ggttttcctc
    71101 atcaggcatt acttgcaccg cgtccagcgt cgattgcaga tgtgcatatg ctggagcgtc
    71161 gaaaacatgt ggccatagtg gatcgcaacg tagccattgc tccagagtat attccggtgc
    71221 ttcgccaatt aatctgtcgc ccatcatgag gtctgcgtgt gccagtaggg tcgtgtcgtc
    71281 ccagtttttt gcgttatgaa aaataattgt gagttcacag ccttccgctg ccagtgtcgc
    71341 ctgtaggcgt tctgccatgg tatgaagttc tatcggtagg tgataaacca gcgtcaaggt
    71401 tttcggtagt ttgacttcat ccggtacttg ccagtgcgga atagtccagc ctggcagtaa
    71461 tgcatgactg gcggtgatca ggttttctcc gacttctaac gtttgtaata aaccggattg
    71521 atgaataatg gagatcactt ttcgcgcctg ccagagggag agtcggggac ttttgcgcaa
    71581 cgttaaatag caaaaaccta aactgatgcc actactgacc tggctgaccc gttgcagctc
    71641 ctccggtttg ccgatggtga tttgcacggg atgccgacaa ctggttccca aatctttttc
    71701 gaaaagcggc ggagttatcc agtactcaac cgctttaagc agcggatgac gcaaatggta
    71761 ataatcatgg ctctccaggc gcaccagctc cgctgtgaat tgtgttaagc gaaaaggacc
    71821 agtgccgatc agtgggaatt gcggatgcgc cagatggctg caatagctcg ccagccggtg
    71881 cgcaagccag taatcggggc gatgtaaaaa gaaggtcaga cactgcggat gggtgacttc
    71941 aatacgcttc acgctaataa ataattgatc cagtgctggc agttgtaaca gcatcaataa
    72001 tcgctggtgt aagtgtgagg cttttactgc atcgccgtta tgccagtgta gggttgaacg
    72061 aagataaaag tcccagcgta acccgtcagt agaggtttcc cagtgatgcg ctaaatcgcc
    72121 aatcgggcgc tgagtattat tatcgaagcg ggtcaggccg gaaaatatct gcccggcgag
    72181 atgctgctcg gcacggccgg gcaaaaagcc tggttgtagc ggttcgagcg ggcgatagta
    72241 gggaatacgc aacgtgggtg tatcgttttg ccattgtccg cccataaacg gctgtaacag
    72301 agtgcgtagc tcacctgggg ccagttgcgc cagctccagc acatcttgct gctttccggt
    72361 ttccagtgcc tgttccatca tcgcattgcg tagcgattcc ggcgtgacca gaaagcgtaa
    72421 tatgtccgcg ctttccgcgt cctgactgcg cctgccactc cagccatccc gcctcctgtg
    72481 cctgacgcaa cagcgtacga acatggcgtt cgctgcaaaa acagcgttcg gccagttcgc
    72541 tgacggtgac ggtttgcggc tttccggctg aaggttgcca cagacgttga tactggttaa
    72601 gacggttgag caatcgcata taaacccgga acaatattat ttaactattc actattactt
    72661 ccgtatatat caggtgatac tcaatctcca ttaaccgtgt cacagagtgg agaaagaaat
    72721 ggctcgtctg gcagcatttg atatggatgg cactttattg atgcctgacc atcatttagg
    72781 tgagaaaacc ctctctactt tggcgcgact gcgtgaacgc gacattaccc tcacttttgc
    72841 cacggggcgt catgcgctgg agatgcagca tattctcggg gcgctatcgc tggatgcata
    72901 tttgattacc ggcaacggaa cgctcgtgca ttctctggaa ggtgaacttt tacatcgtga
    72961 tgatttacct gcggatgtcg cggagctggt gctgtatcag caatgggata cccgagccag
    73021 catgcatatc ttcaatgacg acggttggtt taccgggaaa gagatccctg cgttgttgca
    73081 ggcatttgtc tatagcggtt ttcgttatca gataatcgat gtcaaaaaaa tgccactcgg
    73141 cagcgtcacc aagatctgct tctgtggcga tcacgacgat cttacacgct tgcagatcca
    73201 gctatacgaa gcattaggcg agcgtgcaca tttgtgtttt tccgccacgg attgcctcga
    73261 agtgctgccg gtgggctgca ataaaggcgc tgcattgacg gtgctgaccc aacatctagg
    73321 tttatcgttg cgcgattgca tggcctttgg tgatgcgatg aacgatcgcg aaatgttagg
    73381 cagcgtcggt agcgggttta ttatgggcaa tgcgatgccg caactgcgcg cggagctccc
    73441 gcatttaccg gtgattggac attgccgaaa tcaggctgtc tctcactatt tgacgcactg
    73501 actggactat ccacatctac cttattcccc cgaataatga gatcccttcc agcaccgggc
    73561 aattgcccgg ttttttttgc gttgaatttg tcattttgtg ccgtggtgtt taaaccgcac
    73621 agaataaatt gtcgtgattt cacctttaaa atagaattaa aagagaaaaa aattctctgt
    73681 ggaagggcta tgttagataa aattgaccgt aagctgctgg ccttactgca gcaggattgc
    73741 accctctctt tgcaggcact ggctgaagcc gttaatctga caaccacccc ttgctggaag
    73801 cgcctgaaac ggctggagga cgacggtatc cttatcggca aagtcgccct gctggatccg
    73861 gaaaaaatag gcctcggcct gaccgccttt gtgctgataa aaacgcaaca tcacagtagc
    73921 gaatggtatt gccgctttgt cacggtggtt accgaaatgc cagaagtgct ggggttctgg
    73981 cgcatggctg gtgaatacga ttatctgatg cgcgtccagg ttgccgacat gaaacgctac
    74041 gacgagtttt ataagcgtct ggtaaacagc gtgccggggc tgtcggacgt cacttccagc
    74101 ttcgcgatgg aacagattaa atacaccact tctttaccca tcgaataaat atccagaatc
    74161 aggtcaggac acaacgcgtg cgattatttg ctcaattaag ctggtatttc cgtcgggaat
    74221 ggcgtcgcta tctcggggct gtcgccttgc ttgtcattat cgcgatgctg caactggttc
    74281 cgccaaaagt ggttggtatt gttgtcgatg gcgtgacaga acaacacttt actaccgggc
    74341 agatcctgat gtggatcgcc accatggtgc tgattgccgt tgtggtttat ttcctgcgtt
    74401 acgtctggcg ggtattgctg tttggtgcgt cttatcaact ggctgttgaa ctgcgtgaag
    74461 attattaccg tcagctaagc cggcagcatc ctgagtttta cctgcgtcat cgcacgggtg
    74521 acctcatggc tcgtgcgacc aatgacgtcg ttcgcgtcgt gtttgcagcc ggagaagggg
    74581 tgctgacgct ggtggattca ctggtgatgg gctgcgctgt gttgattatg atgtctacgc
    74641 aaattagctg gcagttgacc ttatttgccc tgttgccgat gccagtgatg gcgatcatga
    74701 tcaagcgcaa cggcgatgcc ttgcatgaac gctttaagct ggcacaggcg gcgttttcta
    74761 gtcttaatga ccgcacctag gaaagcctca ccagtatccg catgatcaaa gcctttggtc
    74821 tggaagatcg ccagtcggcg ttatttgccg cggatgccga agataccggc aaaaaaaaca
    74881 tgcgggtggc gcgtattgat gctcgtttcg acccgaccat ctatatcgcg attggtatgg
    74941 cgaacttgct ggcgattggc ggcggtagtt ggatggtggt gcagggcagt ttaacgctgg
    75001 gccagctcac cagttttatg atgtatttag gtctgatgat ttggccaatg ctggcgctgg
    75061 catggatgtt taacattgtg gaacgtggta gtgctgcata cagccgtatt cgcgcgatgc
    75121 tggcggaagc gccggtggtg aacgatggta gcgaacccgt gccggaaggg cgtggcgaac
    75181 tggatgtaaa tattcaccag ttcacgtatc cgcagactga ccatcctgcg ctggaaaacg
    75241 tcaatttcgc cctgaaaccc ggtcagatgc tgggtatctg cgggccgact ggttccggca
    75301 aaagtaccct gttgtcgctc attcagcgtc atttcgacgt cagcgagggg gatattcgct
    75361 ttcatgatat tcctctgacg aagttacaac tcgatagctg gcgtagccgc ctggcggtag
    75421 ttagccagac accgttcctt ttttccgaca ccgtagcgaa caacatcgcg ttgggttgcc
    75481 cgaatgccac ccagcaagag attgagcatg tcgcgcggtt agccagcgta catgacgata
    75541 ttttgcgtct accgcaaggt tacgatacag aagtgggcga gcgcggcgtg atgctttccg
    75601 gtgggcaaaa acagcgtatc tccattgctc gagcgttatt agtcaacgcg gaaatcctca
    75661 tccttgatga tgcgctttcg gcggtggacg gacgcacaga gcaccagatc ctgcataacc
    75721 tgcgtcagtg gggacaggga agaacggtaa tcatcagtgc ccatcgcctt tcggcactga
    75781 cggaagccag tgaaaatgta atgaacgcat cccacacaat taaacacgga gcagtatgat
    75841 ggttaaaagg gtgaaactgg caggtgtgga gcctcgcaga tttccggcat catagtgccc
    75901 aatacgggat gcataaagct ccctcagact ggagactcca caaatgaaat atacaccggt
    75961 tggcgttgat atcgcaaaac atgtcattca gattcacttc atcaatgagc acacag
//
LOCUS       DAJVUP010000004        66348 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.004, whole genome shotgun sequence.
ACCESSION   DAJVUP010000004 DAJVUP010000000
VERSION     DAJVUP010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 66348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 66348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..66348
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.004"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(128..607)
                     /gene="folK"
                     /locus_tag="OQQ75_000253"
     CDS             complement(128..607)
                     /gene="folK"
                     /locus_tag="OQQ75_000253"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HCS1974704.1"
                     /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILAVSSFYRTP
                     PLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQDRVRKAERWGPRTLDLDIMLF
                     GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELAFPDGETLREVLHTRAFDELSKW"
     gene            complement(604..2022)
                     /gene="pcnB"
                     /locus_tag="OQQ75_000254"
     CDS             complement(604..2022)
                     /gene="pcnB"
                     /locus_tag="OQQ75_000254"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000174652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HCS1974705.1"
                     /translation="MTLPRCTIFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQH
                     AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKL
                     FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGS
                     IEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLR
                     AVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEY
                     HLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL
                     ETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG
                     KRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDE
                     EPSPRRRTRRPRKRAPRREGTA"
     gene            complement(2061..2987)
                     /gene="gluQRS"
                     /locus_tag="OQQ75_000255"
     CDS             complement(2061..2987)
                     /gene="gluQRS"
                     /locus_tag="OQQ75_000255"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HCS1974706.1"
                     /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR
                     ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL
                     HEQGLSYYCTCTRARIQSIVGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGII
                     HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF
                     GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLITALQFLGQQVEAHWQDFS
                     VEQILQSAVKNWTLTAVPESAIVNSTFSNASC"
     gene            complement(3024..3479)
                     /gene="dksA"
                     /locus_tag="OQQ75_000256"
     CDS             complement(3024..3479)
                     /gene="dksA"
                     /locus_tag="OQQ75_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002209354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HCS1974707.1"
                     /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL
                     EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
                     LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
     gene            complement(3657..4361)
                     /gene="sfsA"
                     /locus_tag="OQQ75_000257"
     CDS             complement(3657..4361)
                     /gene="sfsA"
                     /locus_tag="OQQ75_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HCS1974708.1"
                     /translation="MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC
                     ATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS
                     GYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH
                     LRELMNVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE
                     ISAEGMALKKSLPVTL"
     gene            complement(4376..4906)
                     /gene="thpR"
                     /locus_tag="OQQ75_000258"
     CDS             complement(4376..4906)
                     /gene="thpR"
                     /locus_tag="OQQ75_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HCS1974709.1"
                     /translation="MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHL
                     TLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQL
                     ANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA
                     RGRTRYTPLKRWALMQ"
     gene            4980..7409
                     /gene="hrpB"
                     /locus_tag="OQQ75_000259"
     CDS             4980..7409
                     /gene="hrpB"
                     /locus_tag="OQQ75_000259"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HCS1974710.1"
                     /translation="MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH
                     PGINGKIILLEPRRLAARNVAQRLEELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEG
                     VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD
                     NDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLF
                     LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE
                     TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLH
                     LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRL
                     LQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG
                     NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG
                     RYQLANGMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQL
                     VQQSDTVEWDDAQGTLKAWRRLQIGLLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL
                     NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLATLETWLLPHMTGVHSLRGLKSLD
                     IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATN
                     PTIAQGRVPLVLELLSPAQSPLQITRDLSAFWKGAYREVQKEMKGRYPKHVWPDDPAN
                     TAPTRRTKKYS"
     gene            7605..10127
                     /gene="mrcB"
                     /locus_tag="OQQ75_000260"
     CDS             7605..10127
                     /gene="mrcB"
                     /locus_tag="OQQ75_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyl
                     transferase/transpeptidase"
                     /protein_id="HCS1974711.1"
                     /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE
                     PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL
                     PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD
                     FPDSKEGQVRAHLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR
                     SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL
                     FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY
                     FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD
                     MLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA
                     EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI
                     GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGLVWSPQNDDRRYSESGRVMLV
                     DALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA
                     FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT
                     GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWAGRDNNQPTKLYGASGAM
                     SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRVLPVWTSDPQSLCQQSE
                     MQQQPSGNPFDQSSQPQQQPAQQEQKDSDGVAGWIKDMFGSN"
     gene            10347..12536
                     /gene="fhuA"
                     /locus_tag="OQQ75_000261"
     CDS             10347..12536
                     /gene="fhuA"
                     /locus_tag="OQQ75_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrichrome porin FhuA"
                     /protein_id="HCS1974712.1"
                     /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV
                     TAAPAPQESAWGPAATIAAKHSATATKTDTPIEKTPQSISVVTNEEMQMHQFQSVKEA
                     LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLNQNNYLDGLKLQGNFYNDAVIDPYMLE
                     RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDALD
                     DNGEFSYRLTGLARSTNEQQKNSESQRYTIAPSFSWRPDDKTNFTFLSYFQNEPETGY
                     YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNQKMVGYSFEHGFNDTFTVRQNLR
                     FSEMKTSQKSVYGTGIAGDGHTLNRGTVVDNERLQNFSVDTQLESKFATGDVEHTLLT
                     GVDFMRMRNDINASFGSAPSIDLYNKYHPEYFAFGSAEPYQMNESKQTGIYVQDQAEW
                     NKWVFTLGGRYDWSKQATTVRENSYTPTEGYIERNDHQFTWRGGVNYLFDNGISPYFS
                     YSQSFEPSAFDLWSNPRISYKPSKGEQYEAGVKYVPNDMPVVVTGAVYQLTKTNNLTA
                     DPTNPLAQVPAGEIRARGVELEAKAALNANINLTASYTYTDAEYTKDTNLKGKTPEQV
                     PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANTFKVGSAAVMDAVVKYDLA
                     RFGMAGSSLAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF"
     gene            12587..13384
                     /gene="fhuC"
                     /locus_tag="OQQ75_000262"
     CDS             12587..13384
                     /gene="fhuC"
                     /locus_tag="OQQ75_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HCS1974713.1"
                     /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG
                     HNGSSKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV
                     RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM
                     LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL
                     VALRGGEMIAQGTPAEIMRGDTLEMIYGIPMGILPHPAGAAPVSFVY"
     gene            13384..14274
                     /gene="fhuD"
                     /locus_tag="OQQ75_000263"
     CDS             13384..14274
                     /gene="fhuD"
                     /locus_tag="OQQ75_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter
                     substrate-binding protein FhuD"
                     /protein_id="HCS1974714.1"
                     /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL
                     PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
                     SAGYGPSAEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYED
                     FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG
                     STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYG
                     ATLSAMHFVRVLDNAIGGKA"
     gene            14271..16253
                     /gene="fhuB"
                     /locus_tag="OQQ75_000264"
     CDS             14271..16253
                     /gene="fhuB"
                     /locus_tag="OQQ75_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HCS1974715.1"
                     /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP
                     DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG
                     ITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAI
                     NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD
                     DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPR
                     LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM
                     KVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWMWASGALLDDLMPWRWP
                     RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL
                     LPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV
                     LTWISGSTYNATDAQVWRTGIVMVILLAITPLYRRWLTILPLGGDTARAVGMALTPTR
                     IALLLLAACLTATSTMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA
                     DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR"
     gene            complement(16288..17568)
                     /gene="hemL"
                     /locus_tag="OQQ75_000265"
     CDS             complement(16288..17568)
                     /gene="hemL"
                     /locus_tag="OQQ75_000265"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HCS1974716.1"
                     /translation="MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYL
                     YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTEL
                     VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
                     GQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPQPE
                     FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
                     GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEG
                     LLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY
                     LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL"
     gene            17793..19214
                     /gene="clcA"
                     /locus_tag="OQQ75_000266"
     CDS             17793..19214
                     /gene="clcA"
                     /locus_tag="OQQ75_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HCS1974717.1"
                     /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT
                     LVGLAAVAFDKGVAWLQNQRMEALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP
                     EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR
                     MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV
                     FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGM
                     QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV
                     FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVVVELFPQYHLEAGTFAIA
                     GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSEILA
                     RTLAKQEAEQLARSKAASASENT"
     gene            19238..19303
                     /locus_tag="OQQ75_000267"
     CDS             19238..19303
                     /locus_tag="OQQ75_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974718.1"
                     /translation="MAIIIGLEFAQLPMSFGAKYE"
     gene            19296..19640
                     /gene="erpA"
                     /locus_tag="OQQ75_000268"
     CDS             19296..19640
                     /gene="erpA"
                     /locus_tag="OQQ75_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HCS1974719.1"
                     /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
                     FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
                     KSTCGCGSSFSI"
     gene            complement(19687..20310)
                     /locus_tag="OQQ75_000269"
     CDS             complement(19687..20310)
                     /locus_tag="OQQ75_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HCS1974720.1"
                     /translation="MLVYWLDIVGTVVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
                     TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV
                     GIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
                     HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR"
     gene            complement(20348..21147)
                     /gene="btuF"
                     /locus_tag="OQQ75_000270"
                     /pseudo
     CDS             complement(20348..21147)
                     /gene="btuF"
                     /locus_tag="OQQ75_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414700.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter substrate-binding
                     protein BtuF"
     gene            complement(21140..21838)
                     /gene="mtnN"
                     /locus_tag="OQQ75_000271"
     CDS             complement(21140..21838)
                     /gene="mtnN"
                     /locus_tag="OQQ75_000271"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HCS1974721.1"
                     /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA
                     LLKSGIGKVAAALGATLLLEHGKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV
                     TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK
                     IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
                     SLMVESLVQKLAHG"
     gene            21922..23439
                     /gene="dgt"
                     /locus_tag="OQQ75_000272"
     CDS             21922..23439
                     /gene="dgt"
                     /locus_tag="OQQ75_000272"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HCS1974722.1"
                     /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA
                     IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRMKELKLLEAYGLDEL
                     TGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAAL
                     RLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW
                     RGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVAD
                     LEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFM
                     YLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFS
                     HPDVEQLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTR
                     HRLAYVEAVSKLPSDSPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ"
     gene            23569..24993
                     /gene="degP"
                     /locus_tag="OQQ75_000273"
     CDS             23569..24993
                     /gene="degP"
                     /locus_tag="OQQ75_000273"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegP"
                     /protein_id="HCS1974723.1"
                     /translation="MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM
                     LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN
                     GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS
                     DIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA
                     ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL
                     TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD
                     VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS
                     IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV
                     LDSKPSVLALNIQRGDSTIYLLMQ"
     gene            25148..26305
                     /gene="cdaR"
                     /locus_tag="OQQ75_000274"
     CDS             25148..26305
                     /gene="cdaR"
                     /locus_tag="OQQ75_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CdaR"
                     /protein_id="HCS1974724.1"
                     /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
                     GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLR
                     KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDL
                     NQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNS
                     FGRWDAEDHRKRVEQLITRMKEYGRLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQ
                     RMPESRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHN
                     VQPLATSKALFIYRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER"
     gene            complement(26394..26780)
                     /locus_tag="OQQ75_000275"
     CDS             complement(26394..26780)
                     /locus_tag="OQQ75_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3461 family protein"
                     /protein_id="HCS1974725.1"
                     /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK
                     SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD
                     DLRHLESVVTNKISEIEADLEKLTRK"
     gene            complement(26942..27754)
                     /gene="yaeI"
                     /locus_tag="OQQ75_000276"
     CDS             complement(26942..27754)
                     /gene="yaeI"
                     /locus_tag="OQQ75_000276"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414706.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase YaeI"
                     /protein_id="HCS1974726.1"
                     /translation="MISRRRLLQATAATIATSSGFGYMHYWEPGWFELIRHRLAFFKD
                     NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFS
                     DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSVGITVLFNQATVIATPNRQFE
                     LVGTGDLWAGQCKPPPASEANLPRLMLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVP
                     LVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV"
     gene            complement(27809..28633)
                     /gene="dapD"
                     /locus_tag="OQQ75_000277"
     CDS             complement(27809..28633)
                     /gene="dapD"
                     /locus_tag="OQQ75_000277"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HCS1974727.1"
                     /translation="MQQLQNIIETAFERRAEITPTNADTVTREAVNQVIALLDSGALR
                     VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG
                     FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE
                     TGEIHYGHVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
     gene            complement(28664..31336)
                     /gene="glnD"
                     /locus_tag="OQQ75_000278"
     CDS             complement(28664..31336)
                     /gene="glnD"
                     /locus_tag="OQQ75_000278"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HCS1974728.1"
                     /translation="MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQ
                     RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP
                     LSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT
                     NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
                     IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL
                     HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF
                     DEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGI
                     YSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ
                     WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF
                     IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
                     DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
                     LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW
                     HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
                     FTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF
                     TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED
                     LFIIATADRRALNNELQQEVHQRLTEALNPNDKG"
     gene            complement(31398..32192)
                     /gene="map"
                     /locus_tag="OQQ75_000279"
     CDS             complement(31398..32192)
                     /gene="map"
                     /locus_tag="OQQ75_000279"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HCS1974729.1"
                     /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI
                     CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK
                     DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE
                     GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK
                     DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE"
     gene            32560..33285
                     /gene="rpsB"
                     /locus_tag="OQQ75_000280"
     CDS             32560..33285
                     /gene="rpsB"
                     /locus_tag="OQQ75_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HCS1974730.1"
                     /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
                     KTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
                     LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA
                     ATVREGRSQDLASQAEESFVEAE"
     gene            33543..34394
                     /gene="tsf"
                     /locus_tag="OQQ75_000281"
     CDS             33543..34394
                     /gene="tsf"
                     /locus_tag="OQQ75_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HCS1974731.1"
                     /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
                     GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA
                     GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG
                     ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
                     RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV
                     AAMSKQS"
     gene            34541..35266
                     /gene="pyrH"
                     /locus_tag="OQQ75_000282"
     CDS             34541..35266
                     /gene="pyrH"
                     /locus_tag="OQQ75_000282"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HCS1974732.1"
                     /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
                     VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
                     RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
                     VLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF
                     NMNKPGALRRVVMGEKEGTLITE"
     gene            35558..36115
                     /gene="frr"
                     /locus_tag="OQQ75_000283"
     CDS             35558..36115
                     /gene="frr"
                     /locus_tag="OQQ75_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000622421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HCS1974733.1"
                     /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY
                     YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL
                     PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV
                     QKLTDAAIKKIEAALADKEAELMQF"
     gene            36207..37403
                     /gene="ispC"
                     /locus_tag="OQQ75_000284"
     CDS             36207..37403
                     /gene="ispC"
                     /locus_tag="OQQ75_000284"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HCS1974734.1"
                     /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE
                     QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV
                     GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL
                     PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI
                     SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
                     RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTA
                     LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
                     VMRLAS"
     gene            37591..38349
                     /gene="ispU"
                     /locus_tag="OQQ75_000285"
                     /gene_synonym="uppS"
     CDS             37591..38349
                     /gene="ispU"
                     /locus_tag="OQQ75_000285"
                     /gene_synonym="uppS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308203.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl-diphosphate-specific
                     ditrans,polycis-undecaprenyl-diphosphate synthase"
                     /protein_id="HCS1974735.1"
                     /translation="MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
                     GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
                     NVRLRIIGDTSRFNSRLQECIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK
                     VQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFIDV
                     LWPDFDEQDFEGALNAFANRERRFGGTEPGDETA"
     gene            38362..39219
                     /gene="cdsA"
                     /locus_tag="OQQ75_000286"
     CDS             38362..39219
                     /gene="cdsA"
                     /locus_tag="OQQ75_000286"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414717.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HCS1974736.1"
                     /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWG
                     QLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVSLLL
                     VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
                     VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPV
                     TLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
                     LLLLVFRTL"
     gene            39231..40583
                     /gene="rseP"
                     /locus_tag="OQQ75_000287"
     CDS             39231..40583
                     /gene="rseP"
                     /locus_tag="OQQ75_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma E protease regulator RseP"
                     /protein_id="HCS1974737.1"
                     /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF
                     GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA
                     AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETP
                     DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR
                     GLQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI
                     ERQGSLLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT
                     WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI
                     INLFPLPVLDGAHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL
                     "
     gene            40613..43045
                     /gene="bamA"
                     /locus_tag="OQQ75_000288"
     CDS             40613..43045
                     /gene="bamA"
                     /locus_tag="OQQ75_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HCS1974738.1"
                     /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
                     SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN
                     KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR
                     NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK
                     LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN
                     LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT
                     VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL
                     GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
                     GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS
                     YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK
                     TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD
                     HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY
                     DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD
                     MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK
                     AEQFQFNIGKTW"
     gene            43167..43652
                     /gene="skp"
                     /locus_tag="OQQ75_000289"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
     CDS             43167..43652
                     /gene="skp"
                     /locus_tag="OQQ75_000289"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone Skp"
                     /protein_id="HCS1974739.1"
                     /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN
                     TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE
                     QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV
                     K"
     gene            43656..44681
                     /gene="lpxD"
                     /locus_tag="OQQ75_000290"
     CDS             43656..44681
                     /gene="lpxD"
                     /locus_tag="OQQ75_000290"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCS1974740.1"
                     /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN
                     PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
                     SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI
                     YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG
                     ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
                     MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE
                     RKVNQQD"
     gene            44786..45241
                     /gene="fabZ"
                     /locus_tag="OQQ75_000291"
     CDS             44786..45241
                     /gene="fabZ"
                     /locus_tag="OQQ75_000291"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000210741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HCS1974741.1"
                     /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
                     SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
                     RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
     gene            45245..46033
                     /gene="lpxA"
                     /locus_tag="OQQ75_000292"
     CDS             45245..46033
                     /gene="lpxA"
                     /locus_tag="OQQ75_000292"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HCS1974742.1"
                     /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVGIGEGTVL
                     KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
                     VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
                     QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA
                     YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFSRSTRGLIR"
     gene            46033..47181
                     /gene="lpxB"
                     /locus_tag="OQQ75_000293"
     CDS             46033..47181
                     /gene="lpxB"
                     /locus_tag="OQQ75_000293"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HCS1974743.1"
                     /translation="MTEQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGP
                     RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF
                     NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP
                     CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL
                     LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDFSVHLLDGMGREAMVASDAALLASG
                     TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP
                     QKLAAALLPLLANGKISHAMHDTFRELHQQIRCNADEQAAQAVLELAQ"
     gene            47178..47774
                     /gene="rnhB"
                     /locus_tag="OQQ75_000294"
     CDS             47178..47774
                     /gene="rnhB"
                     /locus_tag="OQQ75_000294"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HCS1974744.1"
                     /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN
                     DSKKLSEKRRLALCEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP
                     EYVLIDGNRCPKLPMPAMVVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA
                     QHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS"
     gene            47811..51293
                     /gene="dnaE"
                     /locus_tag="OQQ75_000295"
     CDS             47811..51293
                     /gene="dnaE"
                     /locus_tag="OQQ75_000295"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCS1974745.1"
                     /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF
                     TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS
                     KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE
                     HFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA
                     IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY
                     FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ
                     MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
                     NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
                     HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA
                     GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
                     WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
                     PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG
                     IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAEL
                     AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
                     GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG
                     GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
                     AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
                     IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML
                     FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLAISL
                     TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
                     RGLIGSEQVELEFD"
     gene            51306..52265
                     /gene="accA"
                     /locus_tag="OQQ75_000296"
     CDS             51306..52265
                     /gene="accA"
                     /locus_tag="OQQ75_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HCS1974746.1"
                     /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
                     EKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
                     GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF
                     IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN
                     MLQYSSYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
                     RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA"
     gene            52364..54473
                     /gene="ldcC"
                     /locus_tag="OQQ75_000297"
                     /pseudo
     CDS             52364..54473
                     /gene="ldcC"
                     /locus_tag="OQQ75_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414728.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase LdcC"
     gene            54530..54919
                     /locus_tag="OQQ75_000298"
     CDS             54530..54919
                     /locus_tag="OQQ75_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1974747.1"
                     /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSW
                     KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA
                     IRVDPYTQKRFTFFNDPDGLPLELYEQ"
     gene            54984..56282
                     /gene="tilS"
                     /locus_tag="OQQ75_000299"
     CDS             54984..56282
                     /gene="tilS"
                     /locus_tag="OQQ75_000299"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HCS1974748.1"
                     /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVTL
                     RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA
                     RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR
                     GELAQWALAHGLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE
                     QESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALV
                     RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSETIVPWQTWLQPLELPA
                     GLGSVQLTAGGDIRPPRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRD
                     TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS"
     gene            complement(56331..56591)
                     /gene="rof"
                     /locus_tag="OQQ75_000300"
     CDS             complement(56331..56591)
                     /gene="rof"
                     /locus_tag="OQQ75_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HCS1974749.1"
                     /translation="MLMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD
                     LVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES"
     gene            complement(56578..56778)
                     /locus_tag="OQQ75_000301"
     CDS             complement(56578..56778)
                     /locus_tag="OQQ75_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeP family protein"
                     /protein_id="HCS1974750.1"
                     /translation="MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALS
                     EAVREKAAYAAANLLVSDYVNE"
     gene            56944..57489
                     /locus_tag="OQQ75_000302"
     CDS             56944..57489
                     /locus_tag="OQQ75_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HCS1974751.1"
                     /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL
                     LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEV
                     ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV
                     IWLSDDKNNLEVNLTAWQQPS"
     gene            57486..57908
                     /gene="arfB"
                     /locus_tag="OQQ75_000303"
     CDS             57486..57908
                     /gene="arfB"
                     /locus_tag="OQQ75_000303"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1974752.1"
                     /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR
                     ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQ
                     KARRPTRPTRASKERRLASKAQKSSAKAMRGKVRSGRE"
     gene            57922..58632
                     /gene="nlpE"
                     /locus_tag="OQQ75_000304"
                     /gene_synonym="cutF"
     CDS             57922..58632
                     /gene="nlpE"
                     /locus_tag="OQQ75_000304"
                     /gene_synonym="cutF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308221.1"
                     /note="NlpE, an outer membrane lipoprotein, interacts
                     directly with CpxA, the sensor histidine kinase of the Cpx
                     system for response to envelope stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response activation lipoprotein
                     NlpE"
                     /protein_id="HCS1974753.1"
                     /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS
                     WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASHGTWARTADKLVLTD
                     SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAA
                     TFTDCATGKRFMVANNAELERGYLAARGHSEKPVLLSVEGHFTLEANPDTGAPTKVLA
                     PDTAGKFYPNKDCSSLGQ"
     gene            complement(58832..59652)
                     /locus_tag="OQQ75_000305"
                     /pseudo
     CDS             complement(58832..59652)
                     /locus_tag="OQQ75_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414735.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YaeF family permuted papain-like enzyme"
     gene            complement(59705..61423)
                     /gene="proS"
                     /locus_tag="OQQ75_000306"
     CDS             complement(59705..61423)
                     /gene="proS"
                     /locus_tag="OQQ75_000306"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HCS1974754.1"
                     /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
                     TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
                     PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA
                     YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE
                     DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
                     TVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG
                     PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA
                     GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
                     VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
                     LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL
                     VKQIKG"
     gene            complement(61534..62241)
                     /gene="tsaA"
                     /locus_tag="OQQ75_000307"
     CDS             complement(61534..62241)
                     /gene="tsaA"
                     /locus_tag="OQQ75_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HCS1974755.1"
                     /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQ
                     ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
                     SLVELKEVVCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE
                     MAVSFTAEVEKQLLTLEKRYPQLTLFIREVLAQDPRPAYHKGEETGKTYAVWLHDFNV
                     RWRVTDAGFEVFALEPR"
     gene            complement(62238..62642)
                     /gene="rcsF"
                     /locus_tag="OQQ75_000308"
     CDS             complement(62238..62642)
                     /gene="rcsF"
                     /locus_tag="OQQ75_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rcs stress response system protein RcsF"
                     /protein_id="HCS1974756.1"
                     /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP
                     RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN
                     AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK"
     gene            complement(62760..63575)
                     /gene="metQ"
                     /locus_tag="OQQ75_000309"
     CDS             complement(62760..63575)
                     /gene="metQ"
                     /locus_tag="OQQ75_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HCS1974757.1"
                     /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ
                     VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK
                     LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
                     VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
                     FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
     gene            complement(63615..64268)
                     /gene="metI"
                     /locus_tag="OQQ75_000310"
     CDS             complement(63615..64268)
                     /gene="metI"
                     /locus_tag="OQQ75_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease MetI"
                     /protein_id="HCS1974758.1"
                     /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
                     QIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAP
                     FIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY
                     SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK"
     gene            complement(64261..65292)
                     /gene="metN"
                     /locus_tag="OQQ75_000311"
     CDS             complement(64261..65292)
                     /gene="metN"
                     /locus_tag="OQQ75_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HCS1974759.1"
                     /translation="MIKLSNITKVFHQGTRIIQALNNVSLHVPAGQIYGVIGASGAGK
                     STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN
                     VALPLELDNTPKDEIKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK
                     VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
                     LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ
                     SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH
                     VKVEVLGYV"
     gene            65480..66052
                     /gene="gmhB"
                     /locus_tag="OQQ75_000312"
     CDS             65480..66052
                     /gene="gmhB"
                     /locus_tag="OQQ75_000312"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HCS1974760.1"
                     /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK
                     MGFVLVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE
                     FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
                     ITPEAENAADWVLNSLADLPQAIKKQQKPA"
BASE COUNT        15765 a        16433 c        18201 g        15949 t
ORIGIN      
        1 tgggattgat atttatctgc gggaatttat attatgtttc tgcaaaaatg tttaaactaa
       61 aatttttatt aaggaaagag aggatgtatg attttcagaa aatatttata ttcgtaatat
      121 aaataaatta ccatttgctt aattcgtcaa atgctcttgt atgtaagact tcacgcaacg
      181 tctccccatc aggaaacgcc agctccggtg caatctcaaa cagcggccac agcataaatc
      241 cacgattctt catatcgtag tgcggaacgg tcaggcgttc ggtatttatc acttcattac
      301 caaacagcat gatatcgaga tccagcgtgc gtggtcccca gcgttcagct ttacgaacac
      361 gatcctgttg cagttctatg cgctgtgtat ggttgagtaa ctcttccggg gcgagcgaag
      421 tttcaagcgc cacggcggcg ttgaggtaat cgggttgatc ttgcggcccc agcggtggag
      481 tgcggtaaaa cgaagaaacg gcaagaatgt ggctttcagg gatatcgcct aatgctttca
      541 gggcagcatt gacctgctcc agcggagagg ccagattgct gcctatggca atatacgcca
      601 ctgtcatgcg gtaccctcac gacgcggtgc gcgtttgcgt ggacgacgag tacggcgacg
      661 cggtgacggc tcttcatcca actcgttaag catccctttt tgatctggtg gcgcggaaac
      721 ctggaactca ccccaccatt tcaccagacg ctgcagttca gcgttacgtt caacttcagc
      781 tcgcaaggcc aacaggtcat aagccgcacg gaacttagga tgctccagca gtttccatgc
      841 gcgtttaccc tgacgacggg acatacgcaa ctgcaactgc cagatatcgc gggttaacgt
      901 cgtcagacgt ttcgggattg ccagtgaacg gcaggcttcg tccagcacgt cgttcatcgc
      961 cagcgcgaaa gcgtcgtgat aggtcaggcc gctttcctgg gcgatcttct gtgccgtctc
     1021 cagcagtggg taccagaaca tggcggcaaa caagaacgcc gggttcacgc gcatatcgtt
     1081 atggatacgc gtatcggtat tcttcagcac ctgttcaatg atccgctcca tcgggctgtc
     1141 gccattttcc gtgaagtagc gggtaatggt cgggaacagc ggctggaaca gatgatattc
     1201 acacaacagc ttataggttt cgtaaccgta gcccgcttgt agcagtttaa gcgattcttc
     1261 aaacaggcgt gccggtggga tatcgttcag cagggtagcg aggcgaggga tcggttctgc
     1321 ggtttccggg ctgatgcgca tacccaattt ggcggcaaaa cgtaccgcgc gcagcatacg
     1381 taccggatct tcacggtagc gcgtttccgg gttaccaatc agacggataa cgccgtcctt
     1441 cagatccttc atgccgccaa cgtaatcacg gacggtaaaa tccgctacgc tgtaatacag
     1501 gctgttgata gtgaaatcgc ggcgctgggc gtcttcttcg atggagccga aaatgttgtc
     1561 gcgcagcaac atgccgtttt gcccgcgttg ggaggtcgtg cggtcgctga cgttaccttc
     1621 gtggtgtcca cggaaggttg caacttcgat aatctccggg ccaaacatca catgagccag
     1681 acggaaacgg cgacccacaa ggcggcagtt acggaacagt ttgcgcacct gctcaggcgt
     1741 ggcgttagtg gttacgtcaa aatctttcgg ctttttgcca agtaacaggt cgcgcacgcc
     1801 gccgccaacc agccaggctt cgtatcccgc tttattgagc ctgtacatta ccttcagggc
     1861 attttcactg atatctttgc gggaaatagc atgctgctca cgcgggatca ccgtcacctg
     1921 tggacgggcg actgcctgtt cagcctcgct ttcctcgcgg cttagcacct tgcggcaaaa
     1981 attagcgact cgggtaaaaa tagtacacct cggtagtgtc aaacatcatt caggacaaaa
     2041 aaatagcggc taatcatagc tcagcatgac gcatttgaga atgttgaatt tacaattgcc
     2101 gactcgggca cggcggtcag cgtccagttt ttgacggctg actgaaggat ttgctcgacg
     2161 ctgaaatcct gccagtgtgc ttctacctgc tgccccagaa attgaagtgc cgtgattagt
     2221 accgggcgtg gatcgccttt cggcaacgca ggcgcatgat tctgcttgga aagtttagcg
     2281 ccttgtggat taagcgccag cggcagatga atgtaatctg gcactttcca gccaaaaagc
     2341 tggtacagcg agatttgcct tactgttggt tcaatcagat cagccccacg cactatttct
     2401 gtaacgccct ggaaatgatc atcaaccaca acagccaggt tgtaggcgaa caacccatca
     2461 cggcgatgaa tgataaaatc ttcccgtgcc agtttttcgt cggcgtgaat aatgccgcgc
     2521 agctggtcag taaattgcgt gaccggatgc tgctggcgga tacgcactgc ggcgttgtct
     2581 ggtccatgat gcaacacccg gcaatgaccg tcgtaaatac cgacaatgct ttgaatacgc
     2641 gcacgcgtac aggtgcagta ataacttagt ccttgttcat gtaaccaggc gagtgcttca
     2701 cgataggcgt cgtgacgttg cgattgccag agaacatcgc cgtcccagtg cagaccgtaa
     2761 tgttccagct ggcgcaggat agtttctgcg gcaccgggaa cttcacgagg cgggtcgata
     2821 tcttctatgc gtaccagcca gcgaccttgc cgggcgcgag cctgcaaata gctgccgagc
     2881 gcggcgatca gagagccaaa atgaagctcg ccggaaggag agggggcgaa gcggccaata
     2941 tactgtgtgt ctgtcatctc tttgaacaaa aaataaggcg ggagcatttc ccgcctgtgg
     3001 taaacgtgat ggaacggctg taattagcca gccatctgtt tttcgcgaat ttcagccagc
     3061 gttttgcagt cgatgcacag atcggctgtc gggcgcgctt ccagacggcg aataccaatt
     3121 tcaacaccgc aggattcgca gtagccgaaa tcttcgtctt ccactttttt cagcgtcttc
     3181 tcgatctttt tgatcagctt acgctcgcga tcgcggttac gcagttcgag gctgaactct
     3241 tcttcctggg ctgcacggtc taccgggtcc gggaagttgg ctgcttcatc ctgcatatgt
     3301 gtaacggtgc gatcgacttc atccctgagt tgattacgcc atgcttccag aatacgacgg
     3361 aagtgcgcca gctgggcttc attcatatac tcttcgcccg gcttctcctg atatggttcc
     3421 accccagcga tggcgagaat actcagggac gatgttttac ggttttgccc ttcttgcatg
     3481 ttgcttctcc ttaacacgca ctatcgatcc ccatgttcgg gggaaaaatg aggccgctat
     3541 aaatagcaga tgcttttccg gatagcaatt atctaaacgt aacacttgac aactgtgtga
     3601 ggaaaagcgt atttgcgcac gcgaccagaa tgtaaattaa ccagttactt actttactac
     3661 aatgtaaccg gcagtgattt tttaagagcc atgccttcag cagaaatttc cgctttgtaa
     3721 gccagaattt ctacccccct ctgttgagct tctgacaata gttgcgcgta tttctcatcg
     3781 atgtggcgcg cgggtgaaaa ccgtgtaatg gctgaatgca gcacggcgaa aaagataacc
     3841 gcacgctggc cttcagccgc tacgttcatc aactcccgaa ggtgtttctg acctcgttca
     3901 gtgaccgcat cgggaaaata tccctgttcg ttctccgcta acgtaaccga tttcacttca
     3961 atatagcagt ctggacgcga atccgcctgc aacataaagt caatacggct gcgttctgcg
     4021 ccatatttta cttcgctttt cagcgagcta tagcctgaca gttctgaaat tgattcatta
     4081 aggatagcct ctttcgtcaa cctgttagcc caaagcgtat tgacgcaaat aaatgcgccg
     4141 ctctggcttt gagttagttc ccaggtgtgt gggtatttcc gtttggtgtt gtctgaagtc
     4201 gaataccaga cggtatcgcc acgcgttgca caaccggtca tcgcacccgt attcgggcag
     4261 tgtagcgtta attcgcgacc atcgggtgtg atcacatcgg ctaaaaaacg tttgtaacgc
     4321 tgaattagcg tcgcgcgctg tagaagggga gagaattcca ttgcgacaat ccttgttatt
     4381 gcattagcgc ccagcgtttt agcggcgtgt agcgtgtgcg tccacgggca aacgaggagg
     4441 cgtaaagggt gaactccgtc accgcataag accagttaaa acctggcggc gggattgtca
     4501 ccgcctcgct ggcgtcgcgc aataaggtaa tatgtggatg aaacggacga ttgctttgaa
     4561 aacaaccgct gcgggcagcc tgtgaacgga gcatattcgc cagctggatt aagccgcgtg
     4621 gcggctgacg catccctaac cacaccacac gcgaacgcag ccattgtccg gcgtcatcaa
     4681 gcgtgagtgt gaaaccaggt tgacgaatcc gtccggctaa aagagaaagc gccttctctt
     4741 tctcggcgct cacttcgcct aaaaatgcca gagtcagatg caaattatcg gcggcgaccg
     4801 gacgtcccgc ctcaggtggg aagtgtgtgg cgcgccagtg gataatctgt tcgcggattt
     4861 ctgcaggtaa gtcgatagca aagaacagac gttgcggttc agacatgtga ggcactcggt
     4921 tatgaattac cgcgatgcta caatgtggcg cgaagaatgt taaccctctg gagcgttttg
     4981 tgtcgtcgtt gcccgttgct gccgttttac ctgaattact taccgctctc gattgtgcgc
     5041 cgcaggtatt attaagtgcg ccgaccgggg ccgggaaatc aacctggctg ccgctgcaac
     5101 tgctggcgca tcccggcatt aacgggaaaa ttatcctgct ggagccgcgt cgtctggcgg
     5161 cgcgtaacgt cgcgcaacgg ctggaggagc tgcttaacga aaagccaggc gataccgttg
     5221 gctaccggat gcgtgcgcaa aactgcgtcg ggccgaatac ccgcctggaa gtagttaccg
     5281 aaggcgtgct gacgcggatg atccagcgtg acccggagtt gagcggtgtt ggattggtga
     5341 tccttgatga atttcatgag cgtagcttgc aggcggattt ggcgttggcg ctgttactcg
     5401 atgtgcaaca aggtctgcgt gatgacctta aactgctaat tatgtcggct acgctggaca
     5461 acgaccgctt gcagcaaatg ctgccagaag cgcccgtcgt catctcagaa gggcgctcgt
     5521 ttccggttga acgccgttat ttaccgctgc ccgcgcatca gcgttttgac gatgccgttg
     5581 cggtagccac cgctgaaatg ctgcgtcagg aaagcggatc attactgtta tttttacctg
     5641 gcgtcggaga aattcagcgt gtgcaggaac aactggcttc gcgcatcggc agtgatgtat
     5701 tgctctgccc gctgtatggc gcgttgtcgc tgaacgatca gcgaaaagcg atcctcccgg
     5761 caccgcaagg gatgcgcaaa gtggtgctgg cgaccaatat tgctgaaacc agtttaacca
     5821 tcgaaggtat tcgtctggtg gtggattgtg cccaggagcg tgtggcgcgt tttgatccgc
     5881 gcacggggct aacgcgactg attactcaac gcgttagcca ggcatccatg acgcagcgtg
     5941 ccgggcgcgc cgggcgtctg gagccgggta tctgcctgca tctaatcgcc aaagaacaag
     6001 cagaacgcgc tgccgcgcaa agtgaaccgg aaatcttaca aagcgatctt tccggtttgc
     6061 tgatggaatt actgcaatgg ggatgcagcg atccggcgca gatgagctgg ctggatcaac
     6121 cgccaacggt gaatctactg gccgcgaaac gcctgttaca aatgctgggg gcgctggagg
     6181 gtgaacggct tagtgcgcag gggcaaaaaa tggcagcgct gggtaacgat ccgcgtttag
     6241 cggcaatgct ggttagcgcg aagaacgacg acgaagctgc taccgcggca aaaattgccg
     6301 ccattctcga agagccgcca cggatgggca atagtgacct gggcgtggcg ttttcgcgca
     6361 atcaaccagc ttggcagcaa cgtagtcagc aactgttaaa acgcttaaac gtacgtggcg
     6421 gtgaggcaga cagttcgctt atcgcgccgc tacttgccgg ggcgtttgcc gatcgcattg
     6481 ctcgtcgccg tgggcaagat ggacgctatc aactggcaaa cggcatggga gcgatgctcg
     6541 atgccgacga cgcgctaagc cgccacgaat ggttgatcgc accgttatta ttgcagggca
     6601 gcgcctcgcc ggatgcgcgg attttactgg cgctgccggt cgatattgat gagttagtac
     6661 aacgctgccc gcagctggta cagcagtctg acactgtgga gtgggatgac gcgcaaggta
     6721 cgctgaaagc ctggcgtcgg ctgcaaatcg gtctgctgac ggtgaaagtg cagccgctgg
     6781 cgaaaccctc ggaagacgag ttgcatcagg cgatgcttaa tggcatccgt gataaaggtt
     6841 taagcgtgct caactggacg gcggaagcgg aacagctacg cttgcgtttg ttatgcgccg
     6901 caaagtggtt gccggaatat gactggccag cggttgatga tgaaagttta ttggcgacgc
     6961 tggaaacgtg gctgctgcca catatgactg gcgtacattc actacgcggc ctgaaatcac
     7021 tcgacattta tcaggcacta cgcggattac ttgattgggg aatgcagcaa cgtctggata
     7081 gtgaattgcc tgcgcattac actgtgccga cgggaagccg gatcgccatt cgttatcatg
     7141 aagataaccc gcccgcgctg gcggtgagaa tgcaagagat gtttggcgag gccaccaatc
     7201 cgacgatcgc ccaggggcgc gtgccgctgg tgctggagtt gctttcacct gcccaaagtc
     7261 cattacaaat cacacgagat ttgagcgcct tctggaaagg agcgtaccgt gaggtgcaaa
     7321 aagagatgaa agggcgttat cccaaacatg tctggccgga cgacccggca aatactgcac
     7381 cgacgcgacg gacgaaaaag tattcgtaag gttggttttc tccctctccc tgtgggagag
     7441 ggccggggtg agggcatcag cgcgcacgtt caccctcacc ctaaccctct ccctcaaggg
     7501 agaggggacc gatcgaacac aaattttgag agatatcttc ttctgtcttg taacagaaga
     7561 acagaaaatc gggcttttgc gcctgaatat tgcggagaaa aagcatggcc gggaatgacc
     7621 gcgagccaat tggacgcaaa gggaaaccga cgcgtccggt caaacaaaag gtaagccgtc
     7681 gtcgttacga agatgacgat gattacgacg attatgatga ctatgaggat gaagaaccga
     7741 tgccgcgcaa aggtaagggc aaaggcaaag ggcgtaagcc tcgtggcaaa cgcggctggc
     7801 tatggctact gctaaaactg gctatcgttt ttgccgtgct gatcgccatt tacggcgttt
     7861 atctcgatca aaaaattcgt agccgtattg atggcaaggt ctggcaactg cctgcagcag
     7921 tttatggccg aatggtcaat cttgagccag atatgaccat cagcaagaac gagatggtga
     7981 agctgctgga ggcgactcag tatcgtcagg tgtcgaaaat gacccgtcct ggcgaattta
     8041 ccgtgcaggc caacagcatt gagatgatcc gccgtccgtt tgatttcccg gacagtaaag
     8101 aagggcaggt gcgtgcgcat ctgacctttg atggtgatca tctggcgacc atcgtcaata
     8161 tggagaacaa ccgtcagttc ggctttttcc gtcttgatcc gcgtctgatc accatgatct
     8221 cctcgccaaa cggtgagcaa cgtctgtttg tgccgcgcag tggtttccct gatttgctgg
     8281 tggatacttt gctggcgaca gaagaccgcc atttctacga gcatgatggg atcagcctct
     8341 actcaattgg gcgtgcggtg ctggcaaacc tgaccgcagg tcgcacggtg cagggtgcga
     8401 gtacgctgac gcaacagctg gtgaaaaacc tgttcctctc cagcgagcgc tcttactggc
     8461 gtaaagcgaa cgaagcctac atggcgctga tcatggacgc gcgttacagc aaagaccgta
     8521 ttcttgagct gtatatgaac gaggtgtatc tcggtcagag cggcgacaac gaaatccgcg
     8581 gcttcccgct ggcaagcttg tattactttg gtcgcccggt agaagagcta agcctcgacc
     8641 agcaggcgct gttagtcggt atggtgaaag gggcgtccat ctacaacccg tggcgtaacc
     8701 cgaaactggc gctggagcga cgtaatctgg tgctgcgtct gctgcaacag caacagatta
     8761 ttgatcaaga actctatgac atgttgagtg cccgtccgct gggggttcag ccgcgcggtg
     8821 gggtgatctc tcctcagcca gcctttatgc aactggtgcg tcaggagctg caggcaaaac
     8881 tgggcgataa ggtaaaagat ctctccggcg tgaagatctt cactaccttt gactcggtgg
     8941 cccaggacgc ggcagaaaaa gccgccgtgg aaggcattcc ggcactgaag aaacagcgta
     9001 agttgagcga tcttgaaact gcgattgtgg tcgtcgaccg ctttagtggt gaagttcgtg
     9061 cgatggtggg aggttctgag ccgcagtttg cgggctacaa ccgtgcgatg caggcgcgtc
     9121 gttcgattgg ttcccttgca aaaccagcga cttatctgac ggctttaagc cagccgaaaa
     9181 tctatcgcct gaacacgtgg attgccgatg cgccaatcgc gctgcgtcag ccgaatggcc
     9241 tggtctggtc accgcagaac gatgaccgtc gttatagcga aagcggcaga gtgatgctgg
     9301 tggatgcgtt gacccgttcg atgaacgtgc cgacggtaaa tctggggatg gcgctggggc
     9361 tgcctgcagt tacggatacc tggatcaaac tgggcgtacc gaaagatcag ctgcatccgg
     9421 ttccggcgat gctgctgggg gcgttgaact taacgccaat cgaagtggcg caggcgttcc
     9481 agaccatcgc cagcggtggt aaccgtgcac cgctttctgc actgcgttcg gtaatcgcgg
     9541 aagatggcaa ggtgctgtat cagagcttcc cgcaggcaga acgcgctgtt ccggcgcagg
     9601 cggcgtatct gacactatgg accatgcagc aggtggtaca acgtggtacg ggtcgtcagc
     9661 ttggggcgaa atacccgaac ctgcatctgg cagggaaaac agggactacc aacaataacg
     9721 tagatacttg gtttgcaggc attgacggca gcacggtgac catcacctgg gcaggccgtg
     9781 ataacaacca gccgaccaaa ctgtatggag ccagcggggc aatgtcgatt tatcagcgtt
     9841 atctggctaa ccagacgcca acgccgctga atcttgttcc gccagaagat attgcagata
     9901 tgggcgtgga ctacgacggc aactttgttt gcagcggtgg catgcgtgtc ttgccggtct
     9961 ggaccagcga tccgcaatcg ctgtgccagc agagcgagat gcagcagcag ccgtcaggca
    10021 atccgtttga tcagtcttct cagccgcaac agcaacctgc tcagcaagag cagaaagaca
    10081 gcgacggtgt agccggttgg atcaaggata tgtttggtag taattaacat ctaagcgtga
    10141 aataccggat ggcgagttgc catccggtaa aataacatcc catctaagat attaaccctt
    10201 tcttttcatc tggttgttta ttaacccttc aggaacgctc agattgcgta ccgcttgcga
    10261 acccgccagc gtttcgaata ttatcttatc tttataataa tcattctcgt ttacgttatc
    10321 attcacttta catcagagat ataccaatgg cgcgttccaa aactgctcag ccaaaacact
    10381 cactgcgtaa aatcgcagtt gtagtagcca cagcggttag cggcatgtct gtttatgcac
    10441 aggcagcggt tgaaccgaaa gaagacacta tcaccgttac cgctgcacct gcgccgcaag
    10501 aaagcgcatg ggggcctgct gcaactattg cggcgaagca ctctgctact gcgactaaaa
    10561 cggatacacc aattgaaaaa acgccgcagt ctatttcggt tgtgacaaat gaagagatgc
    10621 agatgcatca atttcagtct gtaaaagaag cattaggtta tacacctggc gttacggtta
    10681 gcagtcgtgg tgcttctaat acatatgatt ttgttatcat tcgtggtttc tcatctgttg
    10741 gtctgaatca aaataattac cttgatggac taaaacttca gggcaacttt tataacgatg
    10801 ctgtgattga tccttacatg ctcgagaggg ttgaactgat gcgtgggccg acgtctgttc
    10861 tctatggaaa aagtaatcct ggtgggatta tttctatggt gagtaagcgt ccgaccactg
    10921 aacccctgaa agaaattcag tttaaaatgg ggacggataa tctgtttcag accggattcg
    10981 atttcagtga tgcactggat gataacggtg agttctctta ccgtttgacg ggcctcgctc
    11041 gctcaacaaa cgaacagcag aaaaactctg aatctcagcg ttataccatt gctccatcat
    11101 tctcatggcg tccagacgac aaaaccaatt ttactttcct gtcctatttc cagaatgaac
    11161 cagaaacggg ttattacggt tggttgccga aagaggggac cgttgagcca ttgcctaatg
    11221 gtaagcgtct accgactgac ttcaatgaag gtgcatcgaa taatacatac tcccgtaacc
    11281 agaaaatggt gggatatagt tttgaacatg gttttaatga caccttcacc gtgcgtcaga
    11341 atctgcgttt cagtgaaatg aaaacctcac agaaaagtgt ttatggcaca gggattgctg
    11401 gtgatggtca taccctaaac cgcgggacag tggtggataa tgagcgtcta caaaacttta
    11461 gcgttgatac ccaacttgaa agtaagtttg ctacaggtga cgtcgagcat actttgctga
    11521 caggggtaga cttcatgcgg atgcgtaatg atatcaatgc cagctttgga tccgcaccat
    11581 ccatcgatct ttataacaaa tatcaccctg aatactttgc atttggtagc gcagagccat
    11641 accagatgaa tgaaagcaaa caaacaggta tttatgttca ggatcaggcg gaatggaata
    11701 aatgggtatt cactctgggg ggacgctacg attggtctaa gcaagcgacc actgttcgtg
    11761 aaaactctta tacgccgact gaaggttata ttgagcgcaa tgatcatcag ttcacctggc
    11821 gcggtggtgt aaattactta ttcgataatg gtatttcacc ttactttagc tatagccagt
    11881 cctttgaacc gagtgctttc gatctgtgga gcaacccacg catttcctat aagccatcga
    11941 aaggtgaaca gtatgaagct ggcgtaaaat atgttccgaa tgatatgccg gtcgttgtta
    12001 cgggcgcagt ctatcaattg acgaaaacaa ataacctgac agcagaccca acaaacccat
    12061 tagcgcaagt cccagcaggt gagattcgcg ctcgtggtgt ggaacttgaa gcaaaagcgg
    12121 cgttaaatgc caatattaac ttgacggctt cttataccta caccgatgcg gaatacacca
    12181 aagacaccaa tctcaaaggt aaaactccag aacaagtacc ggagcatatg gcatctctct
    12241 ggggggatta taccttcaat gaagggccgc tttctggttt aacattggga acaggtggtc
    12301 gttttattgg ttccagctat ggtgatccgg caaacacttt taaagtgggt agcgcagctg
    12361 taatggatgc tgttgtaaaa tatgatctgg cacgctttgg tatggcggga tccagccttg
    12421 ctgtgaacgt caacaatttg ctcgatcgtg agtatgttgc cagttgcttc cagacttatg
    12481 gctgcttctg gggcgcagaa cgtcaggtcg ttgcaaccgc aaccttccgt ttctaatttc
    12541 tcttttgggg cacggatttc cgtgcccatt tcacaagttg gctgttatgc aggaatacac
    12601 gaatcattcc gataccactt ttgcactgcg taatatctcc tttcgtgtgc ccgggcgcac
    12661 gcttttgcat ccgctgtcgt taacctttcc tgccgggaaa gtgaccggtc tgattggtca
    12721 caacggttct agtaaatcca ctctgctcaa aatgcttggc cgtcatcagc ctccgtcaga
    12781 aggggagatt cttcttgatg cccagccgct ggaaagctgg agcagcaaag cgtttgcccg
    12841 caaagtggct tatttgccgc agcagcttcc tccggcagaa gggatgaccg tgcgtgaact
    12901 ggtggcgatt ggtcgttacc cgtggcatgg cgcgctgggg cgctttgggg cggcagatcg
    12961 cgaaaaagtc gaggaagcta tctcgctggt tggcttaaaa ccgctggcgc atcggctggt
    13021 tgatagtctc tctggcggcg aacgtcagcg ggcgtggatc gccatgctgg tggcgcagga
    13081 tagccgttgt ctgttgctcg acgaaccgac ctcggcgctg gatatcgccc accaggttga
    13141 tgtgctggcg ctggtgcacc gtttaagtca ggagcgtggc ctgacggtca ttgccgtgtt
    13201 gcacgatatc aatatggcgg cacgctactg tgattatctg gtcgccctgc gcggtggtga
    13261 aatgattgct cagggaacgc ctgcggaaat tatgcgcggc gataccctcg aaatgattta
    13321 tggcatcccg atgggtattt tgccgcatcc ggcgggtgct gcacctgtga gttttgttta
    13381 ttgatgagcg gcttacctct tatttcgcgc cgtcgactgt taacggcgat ggcgctttct
    13441 ccgttgttat ggcagatgaa taccgcccac gcggcggcta ttgatcccaa tcgtattgtg
    13501 gcgctggagt ggttgccggt ggaattactg ctggcgctcg gcatcgtgcc ttacggcgta
    13561 gcggatacca tcaactatcg cctgtgggtc agcgaaccac cattgccgga ctcagtgatc
    13621 gacgtcggtt tgcgcacaga acctaacctt gaactgctga ccgaaatgaa accgtcgttt
    13681 atggtctggt cggcaggata tggcccttca gcagaaatgc tggcacgtat tgcgccgggg
    13741 cgtggattta acttcagcga cggcaaacag ccgctggcga tggcgcgtaa atcactgacg
    13801 gaaatggcag atttacttaa cctgcaaagc gcagcagaaa cgcatttagc gcaatatgaa
    13861 gactttatcc gcagcatgaa accccgcttt gtgaagcgtg gtgcacgccc gttattgctg
    13921 acgacgctta tcgatccgcg ccatatgttg gtcttcggtc caaacagctt gttccaggaa
    13981 attcttgatg agtacggcat cccaaatgcc tggcaagggg aaaccaactt ctggggcagt
    14041 accgccgtca gtatcgatcg tctggcagcg tataaagacg ttgatgtgct ctgttttgat
    14101 cacgacaaca gcaaagacat ggatgcgcta atggcaaccc cgctgtggca ggccatgccg
    14161 tttgtccgcg ccggacgctt tcagcgcgta cccgcagtct ggttttatgg tgcgacgctc
    14221 tcggcaatgc actttgtgcg cgttctggat aacgccatcg gaggtaaagc gtgagtaaac
    14281 gaattgcgct tttcccggcg ttattgctgg cgctgctggt gattgtcgct acggcgctga
    14341 cctggatgaa cttttcgcag gcgctgccgc gtagccagtg ggcgcaggcc gcctggtcgc
    14401 cggatattga cgtcatcgag cagatgattt ttcactacag cttgctgccg cgtctggcga
    14461 tttcgctgct ggtgggcgca ggcctggggc tggtgggcgt gctgtttcag caagtgctgc
    14521 gtaatccgct ggcggaaccg acgacacttg gcgttgctac aggcgcgcaa ctggggatta
    14581 ccgtcactac gctctgggcg atcccagggg cgatggcgag tcagtttgct gcgctggcgg
    14641 gcgcttgcgt tgttggctta atcgtctttg gcgtcgcgtg ggggaaacgg ctttcgccgg
    14701 taacgctgat cctcgcgggg ctggtagtga gcctttattg tggggcaatc aatcagttac
    14761 tggttatctt ccaccatgac caactgcaaa gcatgttcct gtggagcacc ggaacgctga
    14821 cgcaaaccga ctggggcggt gttgagcgtt tatggccgca gttgctgggc ggtgtgatgc
    14881 tgacgttgct gctacttcgc ccgttaaccc tgatggggct tgatgatggc gtggcgcgca
    14941 atctcgggct ggccttgtcg ctcgcgcgtc tggcggcgct gtcgctggcg attgtcatca
    15001 gtgcgctgct ggtgaacgcg gtggggatta tcggctttat cgggttgttt gcgccgttgc
    15061 tggcaaaaat gctgggggcg cggcgtctgc tgccgcgact gatgctggcg tcgttgattg
    15121 gtgcgctgat cctctggctt tccgatcaaa tcatcctctg gctgactcgc gtgtggatgg
    15181 aagtgtccac cggttcggtc actgcgttga tcggtgcgcc gctgctactg tggctgttgc
    15241 cgcgtttacg cagcattagc gcgccggata tgaaggtcaa cgatcgtgtc gcggctgaac
    15301 gccaacatgt gctggcgttt gccctcgcgg gcggcgtgct gctgttgatg gctgtggtgg
    15361 tggcgctgtc gtttggtcgt gatgcgcacg gctggatgtg ggcgagcggg gcgttgctcg
    15421 atgatttaat gccctggcgc tggccgcgaa ttatggcggc gctatttgcg ggcgtcatgc
    15481 tggcggtggc gggctgtatt attcagcgac tgaccggcaa cccgatggca agcccggaag
    15541 tgctggggat tagctccggc gcagcgtttg gcgtggtact gatgctgttt ctggtaccgg
    15601 gtaatgcttt tggctggctg ttacccgcgg gaagtatcgg tgccgcggtg acgctgttga
    15661 ttattatgat cgccgccggg cgcggtggat tttccccaca ccgcatgtta ctggcgggga
    15721 tggcgttaag taccgcattc accatgcttt taatgatgtt gcaggcgagt ggtgacccgc
    15781 gaatggcgca agtgctcacc tggatctctg gttcgaccta caacgccacc gatgcgcagg
    15841 tctggcgtac cggaattgtg atggtgattt tgctggcgat taccccgctg taccgccgct
    15901 ggctgaccat tttacctctg ggcggtgata ccgcacgagc tgtgggaatg gcgctgacgc
    15961 cgacgcgaat tgcgctgctg ctgttagcgg cttgcctgac ggcgacctcg acgatgacta
    16021 ttggaccgtt gagttttgtt ggtttaatgg caccgcatat tgcgcggatg atgggttttc
    16081 gacggacgat gccacacatc gtaatttcgg cgctggtggg tggtttactg ctggtattcg
    16141 ctgactggtg tgggcggatg gtgctgtttc cattccagat cccggcgggg ctgctgtcga
    16201 cctttatcgg cgcgccatat tttatctatt tgttgagaaa gcagagccgt taattgagtg
    16261 cctcgcccgg tgggcgaggc aaaattatca caacttcgca aatacccgac gtgcagcatc
    16321 gatggtgtta ttgatatctt ccatgctgtg cgccacagac ataaagcccg cttcaaacgc
    16381 tgacggtgcc aggtaaacac cttcgtccag catcatatgg aagaaacgct taaagcgttc
    16441 cacgtcacag gccatcacat cctgatagca cgtcacggac tcggcgtcgg taaagaaaat
    16501 accgaacatg ccgccaacgt ggttaacgac cagcggagtt ccggcttctt ctgccgcttc
    16561 cagcagacct tctgccagac gtgttgtcag ctcatccagc gtttcgtgaa cgcccggctg
    16621 cgcgacttca ttcagacagg cgaaacccgc tgccatcgca atcgggttac cggaaagcgt
    16681 acccgcctga tagaccggac ccgtcggggc cagcgcatcc attacatcac gacgaccacc
    16741 gaatgcgcct accggcattc caccgccgat gattttgccg aggcaggtta aatctggcac
    16801 tacgccgtaa taatcctgtg cgccagccag tgccacgcgg aagccggtca tcacttcatc
    16861 gatgatcagc aacgcgccaa attcgtcgca cagcgcacgc agacctggca ggaactctgg
    16921 ctgcggcgga acacagttca tattgcctgc caccggctcg acgataatac aggcaatctc
    16981 ttgcgggtat tgctcaaacg cggcgcgtac agaagccaga tcgttataag tacaggttaa
    17041 ggtatgtttg gcgaaatctg ccggaacacc cggcgagttt ggctggccta acgtgagtgc
    17101 gccagaaccg gctttcacca gcaggcagtc agcgtgaccg tggtaacaac cttcaaattt
    17161 aatgattttg tcgcgaccgg taaaaccacg ggccaggcgg atggcgctca tggtcgcttc
    17221 agtgccggag ttcaccatgc gcaccatatc catggtcggg accagttcgg tcaccagttg
    17281 cgccattttc acttccattt cggtcggtgc accaaagctt aaaccacgct cggcggcttc
    17341 aatcacggca ttgcggatag ccggatggtt atggcccagc accatcggcc cccaggaacc
    17401 gacataatcg atataggctt tgccatcaac atcgtacaga taagcgccgt ccgctttttc
    17461 gataaacagt ggagtgccgc ccacgccagt aaaggcgcga acaggggagt tcacaccgcc
    17521 agggagcagc tcgcgcgctg cgctgtaaag attttcagac ttactcatgg agggttcctg
    17581 attcgtagaa aaagtgaatg gctgctattc tatgttattc ataacaagtt aaatactcgt
    17641 caaacatcag gctgcttgta ctggtgcaat cctgatttct tagagtataa aagttttgtg
    17701 catttgaaac attacgcttt gcaaaggatt ttcatggaac gtgcgagtaa aatgccgtca
    17761 tcttatttgt atgaccaata agtgatcatt ggatgaaaac tgatactccc tctttagaaa
    17821 caccgcaggc cgcgcgcctg cgacgcagac aactgattcg ccaacttctt gagcgcgata
    17881 aaaccccgtt agccattttg tttatggcgg cagtcgtcgg cacgcttgtc gggctggcag
    17941 cggttgcttt tgacaaaggt gtcgcctggt tgcagaacca acgtatggag gcgctggtac
    18001 atactgctga taattatccg cttctgttaa ccgtcgcttt tctctgttcg gcggtgctgg
    18061 cgatgttcgg ctactttttg gtgcgcaaat acgcgccgga agcaggtggt tcggggatcc
    18121 cggaaattga aggggcgctg gaagatcaac gtcccgttcg ctggtggcgt gtgttgccgg
    18181 tgaaattctt tggcgggctg gggacactcg gcggaggcat ggtgctgggg cgcgaagggc
    18241 caaccgtgca gatcggcggc aatatcggtc gcatggtact cgatattttc cgcctgaaag
    18301 gtgatgaagc tcgccatacg ctgctggcaa ccggtgctgc tgcggggctg gctgcggcct
    18361 ttaacgcgcc gctggcgggt attttgttta ttatcgaaga gatgcgtccg cagtttcgct
    18421 atacgttaat ttcgattaaa gcggtattta ttggcgtcat tatgtcgacc attatgtacc
    18481 ggatttttaa tcatgaagtt gcgttgattg acgtcggtaa actttctgat gcgccgctta
    18541 atacgctgtg gctttatctg atcctcggta ttatttttgg cattttcggc cctattttta
    18601 ataaatgggt gctggggatg caggatttgc tgcaccgtgt gcacggcggc aatattacca
    18661 aatgggtgct aatgggcggt gcgattggcg gtctgtgtgg attgctgggg tttgtggcac
    18721 cagcaacgtc gggcggcggt tttaacctga ttcctatcgc taccgcaggg aatttcagca
    18781 tgggaatgct ggtgtttatc ttcgtcgcgc gggtcattac caccttactg tgcttctctt
    18841 ccggcgcgcc gggcggtatt tttgccccga tgctggcgct gggtactgtg ctgggaaccg
    18901 ctttcggaat ggttgtcgtt gagctgtttc cgcaatatca ccttgaggcg gggacttttg
    18961 ctattgccgg aatgggggcg ttactggcgg catctattcg cgcgccgtta acggggatca
    19021 ttttggttct ggagatgacc gataactacc agctcatttt gccaatgatt attaccggtc
    19081 ttggcgcaac actattagcg caatttaccg gcgggaaacc gctatattcg gagattcttg
    19141 cgcgcacgct ggcaaaacag gaagctgagc aactggcgcg aagcaaggcc gcatcagcca
    19201 gcgagaatac ttgaacgaaa taccagggta ttagataatg gcgattatta ttgggttaga
    19261 atttgcccaa ttgccgatgt cgtttggagc aaaatatgag tgatgacgta gcactgccgc
    19321 tggagtttac cgacgcagca gccaacaaag ttaaaagcct gatcgctgac gaagataacc
    19381 cgaatctgaa attacgcgtg tatatcaccg gtggcggttg cagcggcttc cagtatggtt
    19441 tcacctttga tgatcaggtg aacgaaggcg atatgaccat cgaaaaacag ggcgttggcc
    19501 tggtggttga tccgatgagc ctgcaatatc tggtcggtgg ttccgttgac tataccgaag
    19561 gactggaagg ttctcgtttc atcgtgacca acccgaacgc gaaaagcacc tgcggttgcg
    19621 gttcttcctt tagcatctaa tctgttgttc atgtgccgga taaactatcc ggcacatctt
    19681 ctctcttcaa cgcccattct catccagcgc aaacgtcggt agcttaagat gccaacgaat
    19741 agccgccagc cgaatcaata gcgtcacgac catgcccatc atactggctg tttccagtgg
    19801 tacggaaaat gtgtaataag ccgtagcgtg gacaataccg ccgataatac aggcagttgc
    19861 gtagatttct gtacgtaaaa tcatggggat ttcgcgggcc agtacatcac gaatgatccc
    19921 gccgccaacg ccagtaatga cgcccataca aaccgcgatt aacggaccgg cttccgcatt
    19981 aaaggcttta ttcacgccaa tgccgacaaa caccgccaga ccaacggcgt ccagcaccgg
    20041 caacatccat tttggtaagc gtcttggctg gcgcaccagc acgatggtca gcatgctggt
    20101 taccattgca acgaccagat cggtgggatc tttcacccaa aataccgggc cgtgatccag
    20161 cgccatgtcg cgaattgtcc cgccgcctac agcggtaacc acgcccagta ccagaacacc
    20221 aaaagggtcc atacgcaatt ttccggctaa caaaacgccg gagatggcaa ataccactgt
    20281 gccgactata tccagccaat agacgagcat tgttcaatcc ccactgagca cctaaaaagg
    20341 tcaggcgcta atctacctgt gaaagcgcat tacagagctg ttgtgcagcg aggataatac
    20401 gtgggcttgc acgtcaaacc agtcactcgt gagaggaata acgggaattt tgagctgttc
    20461 accccagtat tgtttgattt taggaatttg gtccggtccg cctgtaatga caatcgcctg
    20521 tggcgagcgt gctaacacct gttcgcggct aacttgcggc caaggaaccc ggctgtcttt
    20581 aaagatgttt tctccgccac aaacttcgag tacctggttt tgaatcgact cttttccact
    20641 ggtaaatggc ggattaatgc cgaattgcag aaaaacacgt tttttaggtt tatcagcata
    20701 ttgcgctttc aattgcgcgt actgatccag cagggattgc gcggcttgtt cggccttatc
    20761 cggttgcgga ctccaggggg ccagttgacg taacgcattg gcaatttgtt caatgcttgt
    20821 cgcatcgacc cacatcactt ttattcccgg cgaagccagc tggtcaacct gccgctcggc
    20881 attacctcca cgccaggcaa tcaccagatc gggtttcagc gcgacaatgc gttccagatt
    20941 catcccctgc caggtggaaa cctgctcaat cttttgcgct tgtggaggat agtcggaata
    21001 gctgctgacc ccaaccggcg tgatcccggc ggcaaaggca agttcagtgt tggcgggaga
    21061 aagcgtgatg acgcgcggtg ccgcgttgag ccacagtggc gcgagaaaag acagggcgac
    21121 cagcgccctg aacagtgact tagccatgtg ccagtttctg caccagtgac tcaaccatca
    21181 ggctggactg tttagcggca acagccagga actcatcgaa gctaagatga gactgttgat
    21241 cggccacgtc ggagatggcg cgtacgacaa caaacgggac gttgaaattg tggcagacat
    21301 gggcgattgc cgtcgcttcc atctctacag caatggcctg tgggaagttg tggcggattt
    21361 tcgccagacc aacagaaccg ttgatgaaag cgtcgccgct aacaatcagg ccacgtacag
    21421 cgttaagatt cagttcggca atgcaggcct cagcggcagc gatcagttta tcgtcagctt
    21481 taaagcctgc cggacagcct ggtaactgac cgtattcata accaaatgcc gtgacatccg
    21541 cgtcgtgata acgtgcttcg tccgagacaa cgatatcgcc cactttcaac gttggtgcca
    21601 ggccaccggc agaaccggtg ttaataatca catctggctt gccgtgttcc aacagcaaag
    21661 tggcacccag cgccgcagcg actttaccga tgcccgattt cagaagcgca acctcggttc
    21721 cattcagttg gccggtatag atttcgcaac cgccgagact gatagtttga cgattttcga
    21781 ttttgtcacg cagcagcgta acttcttctt ccattgcacc aatgatgccg attttcatag
    21841 atttactcgc gataagcccg atttgaaggc atagtttacc atgcgcttac ggggaagcgt
    21901 atttctcacg cgggagagga catggcacag attgatttcc gaaaaaaaat aaactggcat
    21961 cgtcgttacc gttcaccgca gggcgttaaa accgaacatg agatcctgcg gatcttcgag
    22021 agcgatcgcg ggcgtatcat caactctccg gcaattcgtc gtctgcaaca aaagacccag
    22081 gtttttccac tggagcgcaa tgccgccgtg cgcacgcgtc ttacccactc gatggaagtc
    22141 cagcaggtgg ggcgctacat cgccaaagaa attctaagcc gtatgaaaga gcttaaatta
    22201 ctggaagcat acggcctgga tgaactgacc ggcccctttg aaagcattgt tgagatgtca
    22261 tgcctgatgc acgatatcgg caatccgccg tttggtcatt ttggcgaagc ggcgataaat
    22321 gattggtttc gccagcgttt gcacccggaa gatgccgaaa gccagcctct gactgacgat
    22381 cgctgcagcg tggcggcact acgtttacgg gacggggaag aaccgcttaa cgagctgcgg
    22441 cgcaagattc gtcaggactt atgtcatttt gaggggaatg cacaaggcat tcgtctggtg
    22501 catacattga tgaggatgaa tctcacctgg gcacaggttg gcggtatttt aaaatatacc
    22561 cgtccggcgt ggtggcgtgg cgaaacgcct gagacacatc actatttaat gaaaaagccg
    22621 ggttattatc tttctgaaga agcctatatt gcccggttgc gtaaagaact taatttggcg
    22681 ctttacagtc gttttccatt aacgtggatt atggaagcag ccgacgacat ctcctattgt
    22741 gtggcagacc ttgaagatgc ggtagagaaa agaatattta ccgttgagca gctttatcat
    22801 catttgcacg aagcgtgggg ccagcatgag aaaggttcgc tcttttcgct ggtggttgaa
    22861 aatgcctggg aaaaatcacg ctcaaatagt ttaagccgca gtacggaaga tcagtttttt
    22921 atgtatttac gggtaaacac cctaaataaa ctggtaccct atgcggcaca acgatttatt
    22981 gataatctgc ctgcgatttt cgccggaacg tttaatcatg cattattgga agatgccagc
    23041 gaatgcagcg atcttcttaa gctatataaa aatgtcgctg taaaacatgt gtttagccat
    23101 ccagatgtcg agcagcttga attgcagggc tatcgggtca ttagcggatt attagagatt
    23161 tatcgtcctt tattaagcct gtcgttatcc gactttactg aactggtaga aaaagaacgg
    23221 gtgaaacgtt tccctattga atcgcgctta ttccacaaac tctcgacgcg ccatcggctg
    23281 gcctatgtcg aggctgtcag taaattaccg tcagattctc ctgagtttcc gctatgggaa
    23341 tattattacc gttgccgcct gctgcaggat tatatcagcg gtatgaccga cctctatgcg
    23401 tgggatgaat accgacgtct gatggccgta gaacaataac caggcttttg taaagacgaa
    23461 caataaattt ttaccttttg cagaaacttt agttcggaac ttcgcgctat aaaacgaatc
    23521 tgaagaacac agaaattttg cgttatctgt taatcgagac tgaaatacat gaaaaaaacc
    23581 acattagcac tgagtgcact ggctctgagt ttaggtttgg cgttatctcc gctctctgca
    23641 acggcggctg agacttcttc agcaacgaca gcccagcaga tgccaagcct tgcaccgatg
    23701 ctcgaaaagg tgatgccttc agtggtcagc attaacgtag aaggtagcac aaccgttaat
    23761 acgccgcgta tgccgcgtaa tttccagcag ttcttcggtg atgattctcc gttctgccag
    23821 gaaggttctc cgttccagag ctctccgttc tgccagggtg gccagggcgg taatggtggc
    23881 ggccagcaac agaaattcat ggcgctgggt tccggcgtca tcattgatgc cgataaaggc
    23941 tatgtcgtca ccaacaacca cgttgttgat aacgcgacgg tgattaaagt ccagctgagc
    24001 gatggccgta agttcgacgc gaagatggtc ggcaaagatc cgcgctctga tatcgcgctg
    24061 atccaaatcc agaacccgaa aaacctgacc gcaattaaga tggcggattc tgatgcactg
    24121 cgcgtgggtg attacaccgt agcgattggt aacccgtttg gtctgggcga gacggtaact
    24181 tccgggattg tctctgcgct ggggcgtagc ggcctgaatg ctgaaaacta cgaaaacttc
    24241 atccagaccg atgcagcgat caaccgtggt aactccggtg gtgcgctggt taacctgaac
    24301 ggcgaactga tcggtatcaa caccgcgatc ctcgcaccgg acggcggcaa catcggtatc
    24361 ggttttgcaa tcccgagcaa catggtgaaa aacctgacct cgcagatggt ggaatacggc
    24421 caggtgaaac gcggtgagct gggtattatg gggactgagc tgaactccga actggcgaaa
    24481 gcgatgaaag ttgacgccca gcgcggtgct ttcgtaagcc aggttctgcc taattcctcc
    24541 gctgcaaaag cgggcattaa agcgggtgat gtgatcacct cactgaacgg taagccgatc
    24601 agcagctttg ccgcactgcg tgctcaggtg ggtactatgc cggtgggcag caaactgacc
    24661 ctgggcttac tgcgcgacgg taagcaggtt aacgtgaacc tggaactgca gcagagcagc
    24721 cagaatcagg ttgattccag ctccatcttc aacggcattg aaggcgctga gatgagcaac
    24781 aaaggcaaag atcagggcgt ggtagtgaac aacgtgaaaa cgggcactcc ggctgcgcag
    24841 atcggcctga agaaaggtga tgtgattatt ggcgcgaacc agcaggcagt gaaaaacatc
    24901 gctgaactgc gtaaagttct cgacagcaaa ccgtctgtgc tggcactgaa cattcagcgc
    24961 ggcgacagca ccatctacct gttaatgcag taatctcact caaccccttc ctgaaaacgg
    25021 gaaggggttc tccttacaat ctgtgaactt caccacaact ccatacatct tcatcatcct
    25081 ttaggcattt gcacaatgcc gtacgttacg tacttcctta tgctaagccg tgcataacgg
    25141 aggacttatg gctggctggc atcttgatac caaaatggcg caggatatcg tggcacgtac
    25201 catgcgcatc atcgatacca atatcaacgt aatggatgcc cgtgggcgaa ttatcggcag
    25261 cggcgatcgt gagcgtattg gtgaattgca cgaaggtgca ttgctggtac tttcacaggg
    25321 acgagtcgtc gatatcgatg acgcggtggc acgtcatctg cacggtgtgc ggcaagggat
    25381 taatctaccg ttacggctgg aaggtgaaat tgtcggcgta attggcctga caggtgaacc
    25441 agagaatctg cgtaaatatg gcgaactggt ctgcatgacg gctgaaatga tgctggaaca
    25501 gtcgcggttg atgcacttgt tggcgcagga tagccgtttg cgggaggaac tggtgatgaa
    25561 cctgattcag gcagaggaga atactcccgc acttactgaa tgggcgcaac ggctggggat
    25621 cgatctcaat caaccgcgag tggtggctat tgttgaggtc gacagcggtc agcttggtgt
    25681 ggacagcgca atggcggagt tacaacaact gcaaaacgcg ctgactacgc ccgagcgtaa
    25741 taatctggtg gcgattgtct cgctaaccga aatggtggtg ttgaaaccgg cgttgaactc
    25801 ttttgggcgc tgggatgcag aagatcatcg taagcgagtt gaacaactga ttacccgcat
    25861 gaaagagtac ggccggctgc gttttcgcgt ttcactgggc aactatttta ccggtcctgg
    25921 cagtattgcc cgatcctatc gtacggcgaa aacgacgatg gtggtgggta aacagcggat
    25981 gccagaaagt cgctgctatt tttatcagga tctgatgtta cctgtgttac tcgacagttt
    26041 gcgtggcgac tggcaggcca acgaactggc gcgaccgctg gcgcggctga aagcgatgga
    26101 caataacggc ttgctgcgac gaacgctggc ggcgtggttt cgtcacaatg tgcaaccgct
    26161 ggcaacgtca aaggcgttgt ttatttatcg taataccctg gagtatcggc ttaatcgtat
    26221 atcggaactg accgggcttg atttgggcaa ttttgatgac aggttgctgc tgtatgtggc
    26281 gttacaactg gatgaagagc ggtaggttat gcgttaaggt tgaggcggcg ctgtctcatt
    26341 tccctcagcc cgaaggggag aggggaatgc ccgaattaac cgtcaattcg ggattattta
    26401 cgcgttagtt tttccagatc ggcttcaatc tcgctgatct tattggttac gactgactcc
    26461 aggtgacgta agtcgtcgag gatcttacgc ttaagatcaa cttcgctgcg gtcacgctgg
    26521 cagatttgat caagctcatc aatgatatac cgtagattcg ggctgatttc ctggacttct
    26581 ttataaccct gacccacacc atcagcgacg accgttttac gctgacgcgg atatttaaac
    26641 ttaacgctct tggcgaaaaa ctcgcctttg tctttctgga aatagatttt cagaatatcg
    26701 ttgttggctt cctgccggag gctgtaacga tcaatttctt caggattggt aatacccaga
    26761 cttttcagat tgtcgtacat agcgttacct caaaatgagt cagtaaattg tgcttatttt
    26821 agcatttggc ctagcccgcc cggctcgact gtgatcgcag aaagcctttt tcttccagac
    26881 ttctatcatg gcgtaaaaat caaaaaatta cctgctttat tgtggtgata aaattcacgt
    26941 tctacaccag ttccagcatc gttacttccg ggcggcagtt cagacgcaaa ccatacaaac
    27001 tgcccacgcc acgggttgtg tagatgtgtc gttcgccaaa ggcatttaat ccggcgacgt
    27061 aacgtttatc ttcgacaggg gcaaaaggtt caccaaccaa cggtacgcgc agttgcccgc
    27121 cgtgagtatg gccgcacagc atcagatccc agggttcatc acgcatgact tctttgctgt
    27181 cgggattatg tgccagcatc agtcttggca gatttgcttc gctggcggga ggtggtttgc
    27241 attgtccggc ccataagtca ccggtgccta ccagttcgaa ttgcctgttc ggcgtggcga
    27301 tcaccgtagc ctggttaaac aacaccgtga tgcccactga tttcaacgtc tcgccaatta
    27361 agtgattttt ttctgtacca acagggcgat cgtggttgcc gaagcaggca aacgtcggcg
    27421 cacattcggc aaggggggag aggacatcac taaacgccga aaaattcagc ggcatatcaa
    27481 ataatacgta atcgccgccc agtaatatca aatcgggctt ttgttctatg ccaagagcaa
    27541 tcgcgtcaga aatcaggctt aaaggaacaa aacgagagta atggagatcg gccagaaaaa
    27601 gaattttgaa tggtgctgcg ttgtctttaa aaaaggcgag gcggtgacgg attaattcaa
    27661 accagcctgg ctcccagtaa tgcatataac cgaaacctga gctcgtggct atcgtcgcgg
    27721 cagtagcctg caacaatcgg cggcgtgaaa tcatcgctca tccctgcaaa aaaaatcggg
    27781 cagcgtcgtg ctgcccgtgt gcatactttt agtcgatggt acgcagcagt tcgttaatgc
    27841 cgactttgcc gcgagttttc gcgtcaactt tcttaacgat aaccgcacag tagaggctgt
    27901 atttgccatc ttttgacggc agattacctg aaacaaccac agaccccgcc ggaacgtgac
    27961 cgtagtggat ttcgccggtt tcacggtcgt aaatacgggt gctctgacca atgtatacgc
    28021 ccatggaaat gacggaacct tcttcgacaa tcaccccttc aactacttca gagcgtgcgc
    28081 caatgaagca gttatcttca atgatggttg ggttagcctg cagcggttcc agcacgccgc
    28141 cgatgcccac gccaccggaa aggtggacgt ttttaccaat ctgcgcacaa gaaccgacgg
    28201 tcgcccaggt atcaaccatg gtgccttcat caacatatgc gccgatgttg acgtaagacg
    28261 gcatcagcac ggtgttacgg gcaataaacg caccctgacg taccgccgct ggtggcacaa
    28321 cgcggaagcc ttctttctgg aaacgtgctt cgtcgtagtc ggcgaatttc attggcactt
    28381 tgtcgaagta gcggctttct gccccttcga tcacctgatt atcattaata cggaaagaga
    28441 gcagcaccgc ttttttcaac cactgatgcg tcacccactg accgtcaatt ttttccgcta
    28501 cacgcagtgc accggaatcc agcagggcga tcacctgatt taccgcttcg cgggtaacgg
    28561 tgtctgcgtt ggttggcgtg atctcggcac ggcgttcaaa agcggtttca ataatgttct
    28621 gtaactgctg cattgttaaa ctcttttcat atcagtaaac acatcaccct ttatcgtttg
    28681 gattgagggc ctctgtcaac cgctgatgca cttcctgctg caactcgtta ttaagcgcac
    28741 gccggtcagc ggtggcaatt atgaataaat cttctactcg ctcgccaatg gttgtaattc
    28801 gggcaccatg aagcgaaatt cccagatcgg caaaaatttt cccgactctc gccagcagtc
    28861 ctggctggtc gagcgcgata agctcaagga acgatttgcg gtcggtatgg gtcggcaaaa
    28921 acgttacttc ggtttcaaca gtaaaatggc gtaatttggc gggttggcga cggggctgcg
    28981 gtggctgcca gctactttgc gtcagtactt gctccagacc aaaccgaata acctcatgac
    29041 gatctgcgga cagcgggctg ccatcgggtt ccagcacgat aaaggtatcc atcgccatac
    29101 cgtcgcgagt ggtgaaaatt tgtgcgtcgt gaacacttaa attgcggcgg tctaattcgg
    29161 cacagacggc ggcaaacaga taggggcggt ccgggctcca gataaaaatc tcggtgcctc
    29221 cacgcgtagc ctgcgggcta agcaatacca gtggtttgct taaatcatgc tgtaataaat
    29281 ggcgggcatg ccaggccagt tgatttgggc tatggcggac aaaatagtta gcacgacagc
    29341 gtgaccaaat ttggtgcagc gcctcttcgt cgatgttatc catgcgcagt agtgccagtg
    29401 cctggagttg gtgatggcga acccgttcgc gcatatccgg cgtgttttgc attccgcgtc
    29461 gtagctgctt ttcggtggca aaatagagtt cgcgcaacag actttgcttc cagctattcc
    29521 acagcgtttc gttggtggcg caaatgtcag ccactgtcag gcataccaga tagcgcagac
    29581 gattttccgt ttgaacttct tcggcaaact gcttgatgac ttcagggtcc tgaatatcgc
    29641 ggcgttgtgc tgtcaccgac atcagcaagt gctggcgaac cagccaggca accagctgtg
    29701 tttcgcgtga gttcagcccg tggagttctg caaaatgcac tacatcctga gcaccgagaa
    29761 tggagtggtc gccgccgcgt cctttggcga tatcgtgaaa cagcgcggcg atgaaaatca
    29821 gctcagttga cggcaggcgc ggccagacgt ccacacacaa cggatggcgc tggcgcgttt
    29881 cttcactggc aaaactctcc agtttcagca tcacgcggat agtatgttca tccaccgtgt
    29941 aggcgtggaa cagatcaaac tgcatctgcc cgacgatatg cgaccattgc ggcatatacg
    30001 cgccgagcac gctatggcga tgcattggca atagcccgcg ccgcaccgct ccggggtgac
    30061 gcagaatgct caaaaacagt tttcgtgctt ccggaatatt acacagcggt tgttgcagat
    30121 ggcgacgggc atggcgtaac tggcgcagcg tggtggagta aatgccggtg atcgcactgt
    30181 tgcgcaccat ggtgtagaac atacgcaaga tggcttccgg ctggcgcata aatagtgttt
    30241 catcacgcag gtcgattagc gtaccgcgta gctgaaactc atcgtcgatt ggacgtggtt
    30301 tttcgtcggc aggaagggcg aggatggctt catcgaacag ttgcagcagc atctggttga
    30361 gttcactgac gcggcgtgta acgcggaagt aatccttcat catccgctcg accggttcgt
    30421 tgccttcacc actgtaattc agacgctgag cgacgctaag ttggcgatcg aataacaggc
    30481 gattatcgta acggctgacg accagatgca gggcaaagcg aatacgccac agtatatgca
    30541 gacattcgtt taattccgcc cgctccgctg aggttaagaa gccaaaccca accatttcat
    30601 ccagcgatgt tgcgccaaaa tgacggcggg ccacccattg cagagtgtgg atatcgcgca
    30661 agccgccagg gctacttttg atgtctggtt caagattgta gctggtgccg tggtaacgct
    30721 gatggcgctg gttctgttct tcaactttcg ccgcgtagaa cttgtcggaa ggccagaatc
    30781 cttcgctaaa aatatgtttt tgcagttcga ggaagagcgc aacatcgcca attaataagc
    30841 gggattcgat taaattggtg gcgacggtta aatccgataa cccttccagc atgcactctt
    30901 caagcgtgcg cacactatga ccgacttcca gctttacatc ccagagcagc gttaacagct
    30961 cgcccacttt ttgcgcctga tcgtccggga gctttttacg gcttaaaatc agtaaatcga
    31021 tgtcagaaag tggatgcagc tcgccacgac cgtagccacc gacggcgacc aatgccaggt
    31081 cggcaatctg gctgaatccc gcttcaatcc ataatcgttg caggagctgg tcgataaact
    31141 cggtgcgcgc ctcaatcaac tgttctgcag agatcccatt gtcaaaggca tcacccagcc
    31201 aacgctggaa agtatcgata tgggctttta tcccaccgac ggttaattca tcacggggcc
    31261 agacgcatgg attttgcggt tgaccgggca gggtggggag agcggtgttt gcgtactgtt
    31321 ctggaagggt attcattgtg cgccactcat aagattaaat tatcgcatta aaaaagccgg
    31381 cattcgccgg cttcatctta ttcgtcgtgc gagattatcg ccgggatggt gtcatccttg
    31441 cgtagcgtca gaatttcgca gccgttatca gtcaccacaa tagtatgctc atattgtgca
    31501 gacaagctgc gatctttggt ttttaccgtc cagccatctt tcatggtgcg gatctctttt
    31561 ttacccgcgt tgaccattgg ctcgatggtg aacgtcatcc caggtttcag tacgacgttg
    31621 gtttcacggg agtcatagtg cagcacctgc ggttcttcat ggaagccgcg accaataccg
    31681 tgtccgcaat attcacgaac gacggagaag ccttctgctt cgacaaactt ctgaatcgcc
    31741 gcaccgattt cgcgcaggtt aatgcctggt ttgaccatgc gcagcgccag gtacaggctt
    31801 tcttgcgtga tgcggcacag acgttcgccc atgatggtcg gcttaccgac gataaacatt
    31861 ttcgaggtat cgccgtggaa accatctttg attacggtga catcaatgtt aacgatatcg
    31921 ccatctttca gcagcttcgc atcgtccggg ataccgtggc acaccacttc attaatagag
    31981 atgcaaacgg atttcggata gccgtgatag ccgaggcagg cagaaaccgc gtgttgttca
    32041 ttaacaatgt aatcattaca gatgcgatcc agctcgccgg tgctgacgcc cggtttaaca
    32101 tacggttcga tcatctccag cacttcggca gccagtcggc cagcgacgcg cattttttcg
    32161 atatcttctg gggtcttgat tgagatagcc attaattctg tccatcagcg tcggtgatac
    32221 cgacaatata tatgtaagtg ccgtcaatgg tatcacaccc gggcaaattg agaatcattc
    32281 tgaatttcgc caaacgtgcc actgaacgtt ttctataata gaaaattcaa cgtctgatgc
    32341 tgtacacagc gccaacaatt attggtgtcc atgacgtatt tgtggtataa agcgcgccgg
    32401 acttccgatc catttcgtat acacagactg gacggaagcg acaatctcac tttgtgtaac
    32461 aacacacacg tatcggcaca tattccgggg tgccctttgg ggtcggtaat atgggatacg
    32521 tggaggcata accccaactt ttatatagag gttttaatca tggcaactgt ttccatgcgc
    32581 gacatgctca aggctggtgt tcacttcggt caccagaccc gttactggaa cccgaaaatg
    32641 aagccgttca tcttcggtgc gcgtaacaaa gttcacatca tcaaccttga gaaaactgta
    32701 ccgatgttca acgaagctct ggctgaactg aacaagattg cttctcgcaa aggtaaaatc
    32761 cttttcgttg gtactaaacg cgctgcaagc gaagcggtga aagacgctgc tctgagctgc
    32821 gaccagttct tcgtgaacca tcgctggctg ggcggtatgc tgactaactg gaaaaccgtt
    32881 cgtcagtcca tcaaacgtct gaaagacctg gaaactcagt ctcaggacgg tactttcgaa
    32941 aagctgacca agaaagaagc gctgatgcgc actcgtgagc tggagaaact ggaaaacagc
    33001 ctgggcggta tcaaagacat gggcggtctg ccggacgctc tgtttgtaat cgatgctgac
    33061 cacgaacaca ttgctatcaa agaagcaaac aacctgggta ttccggtatt tgctatcgtt
    33121 gataccaact ctgatccgga cggtgttgac ttcgttatcc cgggtaacga cgacgcaatc
    33181 cgtgctgtga ccctgtacct gggcgctgta gctgcaaccg tacgtgaagg ccgttctcag
    33241 gatctggctt cccaggcgga agaaagcttc gtagaagctg agtaataagg cttgataact
    33301 cccccaaaat agttcgagtt gcagaaaggc ggcaagctcg agaattcccg ggagcttaca
    33361 tcagtaagtg accgggatga gcgagcgaag ataacgcatc tgcggcgcga aatatgaagg
    33421 gggagagccc ttatagacca ggtagtacac gtttggttag ggggcctgca tatggccccc
    33481 tttttcactt ttatatctgt gcggtttaat gccgggcaga tcacatctcc gaggatttta
    33541 gaatggctga aattaccgca tccctggtaa aagagctgcg tgagcgtact ggcgcaggca
    33601 tgatggattg caaaaaagca ctgactgaag ctaacggcga catcgagctg gcaatcgaaa
    33661 acatgcgtaa gtccggtgct attaaagcag cgaaaaaagc aggcaacgtt gctgctgacg
    33721 gcgtgatcaa aaccaaaatc gacggcaact acggcatcat tctggaagtt aactgccaga
    33781 ctgacttcgt tgcaaaagac gctggtttcc aggcgttcgc agacaaagtt ctggacgcag
    33841 ctgttgctgg caaaatcact gacgttgaag ttctgaaagc acagttcgaa gaagaacgtg
    33901 ttgcgctggt agcgaaaatt ggtgaaaaca tcaacattcg ccgcgttgct gcgctggaag
    33961 gcgacgttct gggttcttat cagcacggtg cgcgtatcgg cgttctggtt gctgctaaag
    34021 gcgctgacga agagctggtt aaacacatcg ctatgcacgt tgctgcaagc aagccagaat
    34081 tcatcaaacc agaagacgta tccgctgaag tggtagaaaa agaataccag gtacagctgg
    34141 atatagcgat gcagtctggt aagccgaaag aaatcgcaga gaaaatggtt gaaggccgca
    34201 tgaagaaatt caccggcgaa gtttctctga ccggtcagcc gttcgttatg gaaccaagca
    34261 aaactgttgg tcagctgctg aaagagcata acgctgaagt gactggcttc atccgcttcg
    34321 aagtgggtga aggcatcgag aaagttgaga ctgactttgc agcagaagtt gctgcgatgt
    34381 ccaagcagtc ttaattatca aaaaggagcc gcctgagggc ggcttctttt tgtgcccatc
    34441 ttgtaaattc agctaaccct tgtggggctg cgctgaaaag cgacgtacaa tgtcgctagt
    34501 attaattcat ttcaatcgtt gacagtctca ggaaagaaac atggctacca atgcaaaacc
    34561 cgtctataaa cgcattctgc ttaagttgag tggcgaagct ctgcagggca ctgaaggctt
    34621 cggtattgat gcaagcatac tggatcgtat ggctcaggaa atcaaagaac tggttgaact
    34681 gggtattcag gttggtgtgg tgattggtgg gggtaacctg ttccgtggcg ctggtctggc
    34741 gaaagcgggt atgaaccgcg ttgtgggcga ccacatgggg atgctggcga ccgtaatgaa
    34801 cggcctggca atgcgtgatg cactgcaccg cgcctatgtg aacgctcgtc tgatgtccgc
    34861 tattccattg aatggcgtgt gcgacagcta cagctgggca gaagctatca gcctgttgcg
    34921 caacaaccgt gtggtgatcc tctccgccgg tacaggtaac ccgttcttta ccaccgactc
    34981 agcagcttgc ctgcgtggta tcgaaattga agccgatgtg gtgctgaaag caaccaaagt
    35041 tgacggcgtg tttaccgctg atccggcgaa agatccaacc gcaaccatgt acgagcaact
    35101 gacttacagc gaagtgctgg aaaaagagct gaaagtcatg gacctggcgg ccttcacgct
    35161 ggctcgtgac cataaattac cgattcgtgt tttcaatatg aacaaaccgg gtgcgctgcg
    35221 ccgtgtggta atgggtgaaa aagaagggac tttaatcacg gaataattcc cgtgatggat
    35281 aaataagggt aagattccgc gtaagtatcg cgggggcgta agtctggtta taaggcgtta
    35341 ttgttgcagg cagtttggtc acggccagcg cgcagcaacc ggagcgtaca aaagtacgtg
    35401 aggatggcga gcactgctcg gggccaaaat ggcaaataaa atagcctaat aatccagacg
    35461 attacccgta atatgtttaa tcagggctat acttagcaca cttccactgt gtgtgactgt
    35521 ctggtctgac tgagacaagt tttcaaggat tcgtaacgtg attagcgata tcagaaaaga
    35581 tgctgaagta cgcatggaca aatgcgtaga agcgttcaaa acccaaatca gcaaaatacg
    35641 cacgggtcgt gcttctccca gcctgctgga tggcattgtc gtagaatatt acggcacgcc
    35701 gacgccgctg cgtcagctgg caagcgtaac ggtagaagat tcccgtactc tgaaaatcaa
    35761 cgtgtttgat cgttcaatgt ctccggccgt tgaaaaagcg attatggcgt ccgatcttgg
    35821 cctgaacccg aactctgcgg gtagcgacat ccgtgttccg ctgccgccgc tgacggaaga
    35881 acgtcgtaaa gatctgacca aaatcgttcg tggtgaagca gaacaagcgc gtgttgcagt
    35941 acgtaacgtg cgtcgtgacg cgaacgacaa agtgaaagca ctgttgaaag ataaagagat
    36001 cagcgaagac gacgatcgcc gttctcagga cgatgtacag aaactgactg atgctgcaat
    36061 caagaaaatt gaagcggcgc tggcagacaa agaagcagaa ctgatgcagt tctgatttct
    36121 tgaacgacaa aaacgccgct cagtagatcc ttgcggatcg gctggcggcg ttttgctttt
    36181 tattctgtct caactctgga tgtttcatga agcaactcac cattctgggc tcgaccggct
    36241 cgattggttg cagcacgctg gacgtggtgc gccataatcc cgaacacttc cgcgtagttg
    36301 cgctggtggc aggcaaaaat gtcactcgca tggtagaaca gtgcctggaa ttctctcccc
    36361 gctatgccgt aatggacgat gaagcgagtg cgaaacttct taaaacgatg ctacagcaac
    36421 agggtagccg caccgaagtc ttaagtgggc aacaagccgc ttgcgatatg gcagcgcttg
    36481 aggatgttga tcaggtgatg gcagccattg ttggcgctgc tgggctgtta cctacgcttg
    36541 ctgcgatccg cgcgggtaaa accattttgc tggccaataa agaatcactg gttacctgcg
    36601 gacgtctgtt tatggacgcc gtaaagcaga gcaaagcgca attgttaccg gtcgatagcg
    36661 aacataacgc catttttcag agtttaccgc aacctatcca gcataatctg ggatacgctg
    36721 accttgagca aaatggcgtg gtgtccattt tacttaccgg gtctggtggc cctttccgtg
    36781 agacgccatt gcgcgatttg gcaacaatga cgccggatca agcctgccgt catccgaact
    36841 ggtcgatggg gcgtaaaatt tctgtcgatt cggctaccat gatgaacaaa ggtctggaat
    36901 acattgaagc gcgttggcta tttaacgcca gcgccagcca gatggaagtg ctgattcacc
    36961 cgcagtcagt gattcactca atggtgcgct atcaggacgg cagtgttctg gcgcagctgg
    37021 gggaaccgga tatgcgtacg ccaattgccc acaccatggc atggccgaat cgcgtgaact
    37081 ctggcgtgaa gccgctcgat ttttgcaaac taagtgcgtt gacatttgcc gcaccggatt
    37141 atgatcgtta tccatgcctg aaactggcga tggaggcgtt cgaacaaggt caggcagcga
    37201 cgacagcatt gaatgccgca aacgaaatca ccgttgctgc ttttcttgcg caacaaatcc
    37261 gctttacgga tatcgctgcg ttgaatttat cggtactgga aaaaatggat atgcgcgaac
    37321 cacaatgtgt ggacgatgtg ttatctgttg atgcgaacgc gcgtgaagtc gccagaaaag
    37381 aggtgatgcg tctcgcaagc tgaggataat ccggctacag agagtctcgc tatttgttag
    37441 cgtagggctt cagtgatata gtctgcgcca tctgatcgta agtagttggc tttataaggt
    37501 caggtatgcc gtggttttgc atggcttttt ttgtataggc ttcagtattc ctgagtaccg
    37561 taaaccctgt cagggaataa aaaacgcgtg atgttgtctg ctactcaacc acttagcgaa
    37621 aaattgccag cgcatggctg ccgtcatgtt gcgatcatta tggacggcaa tggtcgctgg
    37681 gcaaaaaagc aagggaagat tcgtgccttt gggcataaag ccggggcaaa atccgtccgc
    37741 cgggctgtct cttttgcggc caacaacggt attgaggcgt taacgctgta tgcctttagt
    37801 agtgaaaact ggaaccgacc agcgcaggaa gtcagtgcgt taatggaact gtttgtgtgg
    37861 gcgctcgata gcgaagtaaa aagtctgcac cgacataacg tgcgtctgcg tattattggc
    37921 gataccagtc gctttaactc gcgtttgcaa gaatgtattc gtaaatctga agcgctaaca
    37981 gccgggaata ccggtctgac gctgaatatt gcggcgaact acggtggacg ttgggatata
    38041 gtccagggag tcaggcaact ggctgaaaag gtgcagcaag gaaacctgca accagatcag
    38101 atagatgaag agatgctaaa ccagcatgtc tgtatgcatg aactggcccc tgtagattta
    38161 gtaattagga ctggggggga gcatcgcatt agtaactttt tgctttggca aattgcctat
    38221 gccgaacttt actttataga tgttctctgg cccgatttcg atgaacaaga ctttgaaggg
    38281 gcgttaaatg cctttgctaa tcgagagcgt cgtttcggcg gcaccgagcc cggtgatgaa
    38341 acagcctgat ggggggcgct tttgctgaag tatcgcctga tatctgcttt tgtgttaata
    38401 cccgtcgtca tcgcggcgtt gtttctgttg ccgccggtgg ggttcgccat tgtaacgctg
    38461 gtggtctgca tgctggcagc gtgggaatgg ggacagctta gcggttttac cactcgttcg
    38521 cagcgagtat ggttggcggt gttatgcggg ttattgttgg cgctgatgct ttttctgttg
    38581 ccggaatatc accgaaatat tcatcaaccg ctggttgaaa tctcactttg ggcttcgctg
    38641 ggttggtgga ttgtctcgct attgctggtg ctgttttacc caggttccgc agcaatctgg
    38701 cgtaactcta aaacattgcg ccttattttt ggcgtgctaa ccattgttcc cttcttctgg
    38761 ggcatgctgg cgttacgggc ctggcactat gacgagaatc attacagtgg cgcaatatgg
    38821 ctgctctatg tcatgatcct ggtatggggc gctgactccg gcgcatatat gtttggcaaa
    38881 ttgtttggta aacataagct ggcaccgaag gtttctccgg gtaaaacctg gcaaggcttt
    38941 ataggtggac tcgctactgc agcggtaatc tcatggggtt atggcatgtg ggcgaatctc
    39001 gacgtcgctc ccgtcacctt actcatttgc tctattgtcg cagcgttagc ctcagtgctc
    39061 ggcgatctga ccgagagtat gtttaagcgt gaagcaggaa ttaaggacag cggtcattta
    39121 attccaggac acggtggtat tttagatcgt attgatagcc tgacggctgc ggtaccggtc
    39181 tttgcttgct tgttgttact ggtattcagg acgctttaac ggaaggtaat atgctgagtt
    39241 ttctctggga tttggcttcg ttcatcgttg cactgggtgt acttatcact gtgcatgaat
    39301 ttggtcattt ctgggttgcc cggcgttgtg gtgttcgcgt tgagcgtttc tcaatagggt
    39361 ttggtaaggc gctctggcgg cgaactgata agctcggcac cgaatatgtt atcgccctga
    39421 tcccgctggg cggttatgtc aaaatgctgg atgagcgcgc agaaccggtc gttccggaac
    39481 tccgccacca tgccttcaat aataaatctg ttggccaacg agcggcgatt attgccgcag
    39541 gtccggttgc aaacttcatt tttgctatct ttgcctactg gctggttttt attattggtg
    39601 tgcctggcgt acgtccggtg gttggtgaaa tagcagccaa ttcgatagct gcggaagcac
    39661 aaattgcacc aggtacggaa ctaaaagccg tagatggtat cgaaacgcct gattgggatg
    39721 ccgtgcgttt gcagttggtc gataaaattg gcgatgaaag caccaccatt acagtagcgc
    39781 catttggcag cgaccaacgg cgggatgtaa agctcgattt acgtcactgg gcgtttgagc
    39841 ctgataaaga agatccggta tcttcgctgg ggattcgtcc tcgtgggctg caaattgaac
    39901 ctgtactgga aaatgtgcag ccaaactcgg cggcaagcaa ggcaggtttg caagcaggcg
    39961 acaggatcgt taaagtcgat ggtcagccct taacgcagtg ggtgaccttt gtgatgcttg
    40021 tccgggataa cccggggaaa tccttagcgt tagaaatcga aaggcaggga agtctcttgt
    40081 ctttgacatt aatcccggag agtaaaccgg gtaatggtaa agcgattggt tttgtcggta
    40141 ttgagccgaa agtcattcct ttgccagatg agtataaagt tgtacgccag tatgggccgt
    40201 tcaacgccat cgtcgaagcc acggacaaaa cgtggcagct gatgaagctg acggtcagta
    40261 tgctgggaaa attgatcacc ggtgatgtga aactgaacaa cctcagtggg ccgatctcta
    40321 tcgccaaggg ggctgggatg acagcggaac tcggggtagt ttattacctg ccgtttcttg
    40381 cgcttattag cgtgaactta gggataatta acctgtttcc gttgcccgta cttgacgggg
    40441 cgcatctgct gttccttgcg atcgaaaaga tcaagggcgg accggtatcc gagcgggttc
    40501 aagacttttg ttatcgcatt ggctcgattc tgctggtgct gttaatgggg cttgcacttt
    40561 tcaatgattt ctctcggtta tgagagttag ttaggaagaa cgcataataa cgatggcgat
    40621 gaaaaagttg ctcatagcgt cgctgctgtt tagcagcgcc accgtatacg gtgctgaagg
    40681 gttcgtagtg aaagatattc atttcgaagg ccttcagcgt gtcgccgttg gtgcggccct
    40741 cctcagtatg ccggtgcgta caggcgacac ggttaatgat gaagatatca gtaataccat
    40801 tcgcgctctg tttgctaccg gcaactttga ggatgttcgc gtccttcgtg atggtgatac
    40861 ccttctggtt caggtaaaag aacgtccgac cattgccagc attactttct ccggtaacaa
    40921 atcggtgaaa gatgacatgc tgaagcaaaa cctcgaggct tctggtgtgc gtgtgggcga
    40981 atccctcgat cgcaccacca ttgccgatat cgagaaaggt ctggaagact tctactacag
    41041 cgtcggtaaa tatagcgcca gcgtaaaagc tgtcgtgacc ccgctgccgc gcaaccgtgt
    41101 tgacctaaaa ctggtgttcc aggaaggtgt gtcagctgaa atccagcaaa ttaacattgt
    41161 tggtaaccat gctttcacca ccgacgaact gatctctcat ttccaactgc gtgacgaagt
    41221 gccgtggtgg aacgtggtag gcgatcgtaa ataccagaaa cagaaactgg cgggcgacct
    41281 tgaaaccctg cgcagctact atctggatcg cggttatgcc cgtttcaaca tcgactctac
    41341 ccaggtcagt ctgacgccag ataaaaaagg tatttacgtc acggtgaaca ttaccgaagg
    41401 cgatcagtac aagctttctg gcgttgaagt gagcggcaac cttgccgggc actccgctga
    41461 aattgagcag ctgactaaga tcgagccggg cgagctgtat aacggcacca aagtgaccaa
    41521 gatggaagat gacatcaaaa agcttctcgg tcgctatggt tatgcctatc cgcgcgtaca
    41581 gtcgatgcct gaaattaacg atgccgacaa aaccgttaaa ttacgcgtga acgttgatgc
    41641 gggtaaccgt ttctacgtgc gtaagatccg ttttgaaggt aacgatacct cgaaagatgc
    41701 cgtcctgcgt cgcgaaatgc gtcagatgga aggtgcatgg ctgggaagcg atctggtcga
    41761 tcagggtaag gagcgtctga atcgtctggg cttctttgaa actgtcgata ccgataccca
    41821 acgtgttccg ggtagcccgg accaagtaga tgtagtctac aaggtgaaag aacgtaacac
    41881 cggtagcttc aacttcggga ttggttacgg tactgaaagt ggcgtgagct tccaggctgg
    41941 cgtgcaacag gataactggt taggtacagg ttatgctgtt ggtatcaacg ggaccaaaaa
    42001 cgattaccag acctatgctg aattgtcggt aaccaacccg tacttcactg tagatggtgt
    42061 aagcctcggt ggtcgtctct tctataatga cttccaggca gatgacgccg acctgtccga
    42121 ctataccaac aagagttatg gtacagacgt gacgttgggc ttcccgatca acgaatataa
    42181 ctcgctgcgt gcaggtctgg gttatgtaca taactccctg tccaacatgc agcctcaggt
    42241 tgcgatgtgg cgttatctgt actctatggg tgaacatccg agcacctctg atcaggataa
    42301 cagcttcaaa acggacgact tcacgttcaa ctatggttgg acctataaca agcttgaccg
    42361 tggttacttc ccgacagatg gttcacgtgt caacctgacc ggtaaagtga ccattcctgg
    42421 atcggataac gaatactaca aagtgacgtt agacacggcg acttatgtgc cgatcgatga
    42481 cgatcacaaa tgggttgttc tggggcgtac ccgctggggt tatggtgatg gtttaggcgg
    42541 caaagagatg ccgttctacg agaacttcta tgccggtggt tccagcaccg tccgtggctt
    42601 ccagtccaat accattggtc cgaaagcagt ttacttcccg catcaggcca gtaattatga
    42661 tccggactat gattacgaat gtgcgactca ggacggcgcg aaagacctgt gtaaatcgga
    42721 tgatgctgta ggcggtaacg ccatggcggt tgccagcctc gagttcatca ccccgacgcc
    42781 gtttattagc gataagtatg ctaactcggt tcgtacttcc ttcttctggg atatgggtac
    42841 cgtttgggat acaaactggg attccagcca atattctgga tatccggact atagtgatcc
    42901 aagcaatatc cgtatgtctg cgggtatcgc attacaatgg atgtccccat tggggccgtt
    42961 ggtgttctcc tacgcccagc cgttcaaaaa gtacgatgga gacaaggcag aacagttcca
    43021 gtttaacatc ggtaaaacct ggtaagtgtt ctccacaaag gaatgtagtg gtagtgtagc
    43081 gatgacttta ggcgatcaat ataagatcgc cgggccacgc aaagaactgc accctccggt
    43141 gcaaatggga tggtaaggag tttattgtga aaaagtggtt attagcggca ggtctcggtt
    43201 tagcactggc aacttctgct caggcggctg acaaaattgc aatcgtcaat atgggcagcc
    43261 tgttccagca ggtagcgcag aaaaccggtg tttctaacac gctggaaaat gagttcaaag
    43321 gccgtgccag cgaactgcag cgtatggaaa ccgatctgca ggctaaaatg aaaaagctgc
    43381 agtccatgaa agcgggcagc gatcgcacta agctggaaaa agacgtgatg gctcagcgcc
    43441 agacttttgc tcagaaagcg caggcttttg agcaggatcg cgcacgtcgt tccaacgaag
    43501 aacgcggcaa actggttact cgtatccaga ctgctgtgaa atccgttgcc aacagccagg
    43561 atatcgatct ggttgttgat gcaaacgccg ttgcttacaa cagcagcgat gtaaaagaca
    43621 tcactgccga cgtactgaaa caggttaaat aagtaatgcc ttcaattcga ctggctgatt
    43681 tagcgcagca gttggatgca gaactacacg gtgatggcga tatcgtcatc accggcgttg
    43741 cgtccatgca atctgcacaa acaggtcaca ttacgttcat ggttaaccca aaataccgtg
    43801 agcatttagg cttgtgccag gcgtccgcgg ttgtcatgac ccaggacgat cttcctttcg
    43861 cgaaaagtgc cgcgctggta gtgaagaatc cctacctgac ttacgcgcgc atggcgcaaa
    43921 ttttagatac cacgccgcag cccgcgcaga acattgcacc cagtgcggtg atcgacgcga
    43981 cggcgaagct ggggaacaat gtatcgattg gcgctaacgc ggtgattgaa tccggcgttg
    44041 aactgggcga taacgtgatt atcggtgccg gttgcttcgt aggtaaaaac agcaaaatcg
    44101 gtgcaggttc gcgtctctgg gcgaacgtaa ccatttacca tgagatccag atcggtcaga
    44161 attgcctgat ccagtccgga acagtggtag gcgcagacgg ctttggttat gccaacgatc
    44221 gtggtaactg ggttaagatc ccacagattg gtcgcgtaat tattggcgat cgcgtggaga
    44281 tcggtgcctg cactaccatc gatcgcggcg cactggatga cactgttatt ggcaatggcg
    44341 tgatcattga taaccagtgc cagattgcac ataacgtcgt gattggcgac aatacggcgg
    44401 ttgccggtgg cgtcattatg gcgggcagcc tgaaaattgg tcgttactgc atgatcggcg
    44461 gagccagcgt aatcaacggg catatggaaa tatgcgacaa agtgacggtt acgggcatgg
    44521 gtatggtgat gcgtcccatc actgaaccag gcgtctattc ctcaggcatt ccgctgcaac
    44581 ccaacaaagt ctggcgcaaa accgctgcac tggtgatgaa cattgatgac atgagcaagc
    44641 gtctgaaatc gcttgagcgc aaggttaatc aacaagacta acgttccatc ttttgttcgc
    44701 caaactttac ggcctgtctc attcttacga ttgcggcagg ccgtgttatt attgtcgttt
    44761 cttatatttt gacaggaaga gtatcttgac tactaacact catactctgc agattgaaga
    44821 gattttagaa cttctgccgc accgtttccc gttcttactg gtggatcgcg tgctggattt
    44881 tgaagaaggt cgttttctgc gcgcagtaaa aaatgtctct gtcaatgagc cattcttcca
    44941 gggccatttc cctggaaaac cgattttccc gggtgtgctg attctggaag caatggcaca
    45001 ggcaacaggt attctggcgt ttaaaagcgt aggaaaactg gaaccgggtg agctgtacta
    45061 cttcgctggt attgacgaag cgcgcttcaa gcgcccggtc gtgcctggcg atcaaatgat
    45121 catggaagtc actttcgaaa aaacgcgccg cggcctgacc cgttttaaag gggttgctct
    45181 ggtcgatggt aaagtagttt gcgaagcaac gatgatgtgt gctcgtagcc gggaggcctg
    45241 atacgtgatt gataaatccg cctttgtgca tccaaccgcc attgtggaag agggcgcgtc
    45301 aattggcgcg aacgcacaca ttggtccttt ttgtatcgtt ggaccccatg tcggaattgg
    45361 tgagggtacc gtactgaaat ctcacgttgt cgtgaatggt catactaaaa ttggccgcga
    45421 taatgagatt tatcagttcg cctccatcgg cgaagttaac caggatctga aatatgctgg
    45481 cgaaccgacc cgtgtggaaa tcggcgatcg taaccgcatt cgcgaaagcg tcaccattca
    45541 tcgtggcaca gtccagggcg gtggattgac gaaggtgggc agcgacaact tactgatgat
    45601 caacgcgcac attgcgcacg attgtacggt aggtaaccgc tgtattctcg ccaacaacgc
    45661 aacgctggcg ggtcacgtat cggttgacga cttcgcgatc atcggcggca tgaccgcagt
    45721 ccatcagttc tgcatcattg gtgcgcacgt gatggttggc ggctgctccg gtgtggcgca
    45781 ggacgtccct ccttatgtca ttgcgcaggg taaccacgca acgccgttcg gtgtcaatat
    45841 cgaagggctg aagcgccgcg gattcagccg tgaggcgatt accgctatcc gcaatgcgta
    45901 taagctgatt tatcgtagcg gtaaaacgct cgatgaagtg aaaccggaaa ttgctgaact
    45961 ggcggaaaca tatccggaag tgaaagcctt taccgatttc ttttcacgct caacgcgcgg
    46021 tctgattcgt taatgactga acagcgtcca ttaacgattg ccctggtcgc cggagaaacc
    46081 tccggcgata tcctaggggc cggtttaatc cgcgctctga aagaacgtgt gcccaacgcc
    46141 cgctttgttg gtgttgccgg gccacgaatg caggctgaag gctgcgaagc ctggtacgaa
    46201 atggaagaac tggcggtgat gggcattgtt gaagtgctcg gtcgtctgcg tcgcttactg
    46261 catattcgtg ccgatctgac aaagcgtttt ggcgaactga agccagatgt ttttgttggt
    46321 attgatgcgc ctgacttcaa tattactctt gaaggtaacc tcaaaaagca gggtatcaaa
    46381 accattcatt acgtcagtcc gtcagtctgg gcgtggcgac agaaacgtgt tttcaaaata
    46441 ggcagagcca ccgatctggt gctcgcattt ctgcctttcg aaaaagcgtt ttatgacaaa
    46501 tacaacgtac cgtgccgctt tatcggtcat accatggctg atgccatgcc attagatcca
    46561 gataaaaatg ccgcccgtga tgtgctgggg atccctcacg atgcccactg cctggcgttg
    46621 ctaccgggga gccgtggtgc agaagttgaa atgcttagtg ccgatttcct gaaaacggcc
    46681 cagcttttgc gccagacata tccggatctc gaaatcgtgg tgccactggt gaatgccaaa
    46741 cgccgcgagc agtttgaacg catcaaagct gaagtcgcgc cagacttttc agttcatttg
    46801 ctggatggga tgggccgtga ggcgatggtc gccagcgatg cggcgctact ggcgtcgggt
    46861 acggcagccc tggagtgtat gctggcgaaa tgcccgatgg tggtgggata tcgcatgaag
    46921 ccttttacct tctggttggc gaagcggctg gtgaaaactg attatgtctc gctgccaaat
    46981 ctgctggcgg gcagagagtt agtcaaagag ttattgcagg aagagtgtga gccgcaaaaa
    47041 ctggctgcgg cgctgttacc gctgttggcg aacgggaaaa tcagccacgc gatgcacgat
    47101 accttccgtg aactgcatca gcagatccgc tgcaatgccg atgagcaggc ggcacaagcc
    47161 gttctggagt tagcacaatg atcgaatttg tttatccgca cacgcagctg gttgcgggtg
    47221 tggatgaagt cggacgcggg ccgttagttg gcgcggtcgt caccgctgcg gtgatccttg
    47281 acccggcgcg cccgattgcc gggctgaatg attccaaaaa gctgagcgaa aaacgccgtc
    47341 tggcgctctg tgaagagatc aaagagaaag cgttgagctg gagtctgggc cgcgcggaac
    47401 cccacgaaat cgacgagctg aacattcttc atgcgaccat gctggcgatg cagcgtgccg
    47461 tcgctgggct gcatattgcg ccggaatatg tgttgattga tggtaaccgc tgcccgaaat
    47521 taccgatgcc tgcgatggtt gtggtgaaag gcgatagccg cgtaccggaa atcagtgccg
    47581 cgtctatcct ggcgaaagtg acgcgtgacg ccgaaatggc ggcgctggat attgttttcc
    47641 cgcaatatgg ttttgcccaa cacaaagggt acccaaccgc ttttcatctg gaaaaactgg
    47701 ctgaacacgg cgcgaccgaa caccatcggc gcagctttgg gcctgtcaaa cgcgcactgg
    47761 gacttgcgtc ctgattcttg tgtcgagatt aagtaaaccg gaatctgaag atgtctgaac
    47821 cacgtttcgt acacctgcgg gtgcacagcg actactcgat gatcgatggc ctggccaaaa
    47881 ctgcaccgtt ggtaaaaaag gcggcggcgt tgggtatgcc agcactggcg atcaccgatt
    47941 tcaccaacct ttgtggtctg gtgaagttct acggagcggg acatggcgca gggattaagc
    48001 ctatcgtcgg ggcagatttt aacgtccagt gcgacctgct gggtgatgag ttaacccacc
    48061 tgacggtact ggcggcgaac aataccggct atcagaatct gacgttgctg atctcaaaag
    48121 cgtatcagcg cgggtacggt gccgctgggc cgatcatcga tcgcgactgg cttatcgaat
    48181 taaatgaagg gttgatcctt ctttccggcg ggcgcatggg cgacgtcgga cgcagtcttt
    48241 tgcgtggtaa cagcgcgctg gtagatgagt gtgtcgcgtt ttatgaagaa cacttcccgg
    48301 atcgctattt tctcgagctg atccgcaccg gcaggccgga tgaagaaagc tatctgcacg
    48361 cggcggtgga actggcggaa gcgcgcggtt tgcccgtcgt ggcgactaac gatgtgcgct
    48421 ttatcgacag cagcgacttt gacgcacacg aaatccgcgt cgcgatccac gacggcttta
    48481 ccctcgacga tcctaaacgc ccgcgtaact attcgccgca gcaatatatg cgtagcgaag
    48541 aggagatgtg tgagctgttt gccgacatcc ccgaagccct tgccaacacc gttgagatcg
    48601 ccaaacgctg taacgtaact gtgcgtcttg gtgaatactt cctgccgcag ttcccgaccg
    48661 gggacatgag caccgaagat tatctggtca agcgtgcaaa agagggcctg gaagagcgtc
    48721 tggccttttt attccctgac gaggaagaac gtgttaagcg ccgcccggaa tatgacgaac
    48781 gtctggagac tgaacttcag gttatcaacc agatgggctt cccgggctac ttcctcatcg
    48841 ttatggaatt tatccagtgg tcgaaagata acggcgtacc ggtagggcca ggccgtggct
    48901 ccggtgcggg ttcactggtg gcctacgcgc tgaaaatcac cgacctcgat ccgctggaat
    48961 ttgacctgct gttcgaacgt ttccttaacc cggaacgtgt ctccatgcct gacttcgacg
    49021 ttgacttctg tatggagaaa cgcgatcagg ttatcgagca cgtagcggac atgtacggtc
    49081 gtgatgcggt atcgcagatc atcaccttcg gtacaatggc ggcgaaagcg gtgatccgcg
    49141 acgtaggccg cgtgctgggg catccgtacg gctttgtcga tcgtatctcg aaactgatcc
    49201 cgcccgatcc ggggatgacg ctggcgaaag cgtttgaagc cgagccgcag ctgccggaaa
    49261 tctacgaagc ggatgaagaa gttaaggcgc tgatcgacat ggcgcgcaaa ctggaagggg
    49321 tcacccgtaa cgccggtaag cacgccggtg gggtggttat cgcgccgacc aaaattaccg
    49381 attttgcgcc gctttactgc gatgaagagg gcaaacatcc ggtcacccag tttgataaaa
    49441 gcgacgttga atacgccgga ctggtgaagt tcgacttcct tggtttgcgt acgctcacca
    49501 tcatcaactg ggcgctggag atgatcaaca agcggcgggc gaagaatggc gagccgccgc
    49561 tggatatcgc cgcgatcccg ctggatgaca agaaaagctt cgacatgctg caacgctcgg
    49621 aaaccacggc ggtattccag cttgaatcgc gcggcatgaa ggatctgatc aagcgtctgc
    49681 aacctgactg cttcgaagat atgatcgcac tggtggcgct gttccgccca ggtccgttgc
    49741 aatcagggat ggtggataac tttatcgacc gtaaacatgg tcgcgaagaa atctcctatc
    49801 cggacgtaca gtggcagcat gaaagcctga aaccggtact ggagccaacc tacggcatca
    49861 tcctgtatca ggaacaggtc atgcagattg cgcaggtgct ttctggttat accctcggtg
    49921 gcgcggatat gctgcgtcgt gcgatgggta agaaaaagcc ggaagagatg gctaagcagc
    49981 gttctgtatt tgctgaaggt gcagaaaaga acggagtcaa cgccgaactg gcgatgaaaa
    50041 tcttcgacct ggtggagaaa ttcgcgggtt acggatttaa caaatcgcac tctgcggcct
    50101 atgctttggt gtcatatcaa acgttatggc tgaaagcgca ctatccggcg gagtttatgg
    50161 cggcggtaat gaccgccgat atggacaaca ccgagaaggt ggtgggcctg gtggatgagt
    50221 gctggcggat ggggctgaaa atcctgccac cagatataaa ctccggtctt taccatttcc
    50281 acgtcaacga cgacggcgaa atcgtgtatg gtattggcgc catcaaaggg gtaggtgaag
    50341 gtccgattga ggccatcatc gaagcccgta ataaaggcgg ctacttccgc gaactgtttg
    50401 atctctgcgc ccgtaccgac accaaaaagt taaaccggcg ggtgctggaa aaactgatca
    50461 tgtccggggc gtttgaccgt cttgggccac accgcgcggc gctgatgaac tcgctgggtg
    50521 atgcgttaaa agcggcagat caacacgcga aagcggaagc tatcggtcag gccgatatgt
    50581 tcggcgtgct ggccgaagag ccggaacaaa ttgaacaatc ctacgccagc tgccaaccgt
    50641 ggccggagca ggtggtgtta gatggggaac gtgaaacgtt aggtctgtac cttacgggac
    50701 accctatcaa ccagtattta aaagagattg agcgttatgt cggaggcgta aggctgaaag
    50761 acatgcaccc gacagaacgt ggtaaagtca tcacggctgc ggggctcgtt gttgccgcgc
    50821 gggttatggt caccaagcgc ggcaatcgta tcggtatctg cacgctggat gaccgttccg
    50881 ggcggctgga agtgatgttg tttactgacg ccctggataa ataccagcaa ttgctggaaa
    50941 aagaccgcat acttatcgtc agcggacagg tcagctttga tgacttcagc ggtgggctta
    51001 aaatgaccgc tcgcgaagtg atggatattg acgaagcccg ggaaaaatat gctagcgggc
    51061 ttgctatctc gctgacggac aggcaaattg atgaccagct tttaaaccga ctccgtcagt
    51121 ctctggaacc ccaccgctct gggacaattc cagtacatct ctactatcag agggcggatg
    51181 cacgcgcgcg gttgcgtttt ggcgcgacgt ggcgtgtctc tccgagcgat cgtttattaa
    51241 acgatctccg tggcctcatt ggttcggagc aggtggaact ggagtttgac taatacagga
    51301 atactatgag tctgaatttc cttgattttg aacagccgat tgcagagctg gaagcgaaaa
    51361 tcgattctct gactgcggtt agccgtcagg atgagaaact ggatattaac atcgatgaag
    51421 aagtgcatcg tctgcgtgaa aaaagcgtag aactgacacg taaaatcttc gccgatctcg
    51481 gtgcatggca gattgcgcaa ctggcacgcc atccacagcg tccttatacc ctggattacg
    51541 ttcgcctggc atttgatgaa tttgacgaac tggctggcga ccgcgcgtat gcagacgata
    51601 aagctatcgt cggtggtatc gcccgtcttg acggtcgtcc ggtgatgatc attggtcatc
    51661 aaaaaggtcg tgaaaccaaa gaaaaaattc gccgtaactt tggtatgcca gcgccagaag
    51721 gttaccgcaa agcactgcgt ctgatgcaaa tggctgaacg ctttaagatg cctatcatca
    51781 cctttatcga caccccgggg gcttatcctg gcgtgggcgc agaagagcgt ggtcagtctg
    51841 aagccattgc acgcaacctg cgtgaaatgt ctcgcctcgg cgtaccggta gtttgtacgg
    51901 ttatcggtga aggtggttct ggcggtgcgc tggcgattgg cgtgggcgat aaagtgaata
    51961 tgctgcaata cagctcctat tccgttatct cgccggaagg ttgtgcgtcc attctgtgga
    52021 agagcgccga caaagcgccg ctggcggctg aagcgatggg tatcatcgct ccgcgtctga
    52081 aagagctgaa actgatcgac tccatcatcc cggaaccgct gggcggcgct caccgtaacc
    52141 cggaagcgat ggcggcatcg ttgaaagcgc aactgctggc ggatctggcc gatctcgatg
    52201 tgttaagcac tgaagattta aaaaatcgtc gttatcagcg cctgatgagc tacggttacg
    52261 cgtaattcgc aaaagttctg aaaaagggtc acttcggtgg ccctttttta tcgccacggt
    52321 ttgagcaggc tatgattaag gaaggatttt ccaggaggaa cacatgaaca tcattgccat
    52381 tatgggaccg catggcgtct tttataaaga tgagcccatc aaagaactgg agtcggcgct
    52441 ggtggcgcaa ggctttcaga ttatctggcc acaaaacagt gttgatttgc tgaaatttat
    52501 cgaacataac cctcgaattt gcggcgtgat ttttgactgg gatgagtaca gtctcgattt
    52561 atgcagcgat atcaatcaac ttaatgaata tctcccgctt tatgccttca tcaacaccca
    52621 ctcgacgatg gatgtcagcg tgcaggatat gcggatggcg ctctggtttt ttgaatatgc
    52681 gctggggcag gcggaagata tcgccattcg tatgcgtcag tacaccaacg aatatcttga
    52741 taacattacg ccgccgttca cgaaagcctt gtttacctac gttaaagagc ggaagtacac
    52801 cttttgtacg ccggggcata tgggcggcac cgcatatcaa aaaagcccgg ttggctgcct
    52861 gttttatgat tttttcggcg ggaataccct caaggctgat gtctctattt cggtcaccga
    52921 gcttggttcg ttgctcgacc acaccgggcc acacctggaa gcggaagagt acatcgcgcg
    52981 gacttttggc gcggaacaga gttatatcgt taccaacgga acatcgacgt cgaacaaaat
    53041 tgtgggtatg tacgccgcgc catccggcag tacgctgttg atcgaccgca attgtcataa
    53101 atcgctggcg catctgttga tgatgaacga tgtagtgcca gtctggctga aaccgacgcg
    53161 taatgcgttg gggattcttg gtgggatccc gcaccgtgaa tttactcgcg acagcatcga
    53221 agagaaagtc gctgccacca cgcaggcaca atggccggtt catgcggtga ttaccaactc
    53281 cacctatgat ggcttgctct acaacaccga ctggatcaaa cagacgctgg atgtcccgtc
    53341 gatccacttc gattccgcct gggtgccgta cacccatttt catccgatct accaggggaa
    53401 aagtgatctt cgaaacgcaa tcgacccaca aaatgctggc ggcgttatcg caggcttcgc
    53461 tgatccacat taaaggcgag tatgacgaag aggcgtttaa cgaagccttt atgatgcata
    53521 ccaccacctc gcccagttat cccattgttg cttcggttga gacggcggcg gcgatgctgc
    53581 gtggtaatcc gggcaaacgg ctgattaacc gttcggtgga gcgggcgctg cattttcgca
    53641 aagaggtcca gcggttgcgg gaagagtctg acggttggtt tttcgatatc tggcaaccgc
    53701 cgcaggtgga tgaagccgaa tgctggcccg ttgcgccagg cgaacagtgg cacggcttta
    53761 acgatgcgga tgccgatcat atgtttctcg atccggttaa agtcactatt ttgataccgg
    53821 ggatggacga acagggcaat atgagcgagg aggggatccc ggcggcgctg gtggcaaaat
    53881 tcctcgacga acgtgggatc gtagtagaga aaaccggccc ttataacctg ctgtttctct
    53941 ttagtattgg tatcgataaa accaaagcaa tgggattatt gcgtgggttg acggaattta
    54001 aacgctctta cgatctcaac ctgcggatca aaaatatgct acccgatctc tatgctgaag
    54061 atcccgattt ctaccgcaat atgcgtattc aggatctggc gcaagggatc cataagctga
    54121 ttcgtaaaca cgatcttccc ggtttgatgt tgtgggcatt cgatactttg ccggaaatta
    54181 tcatgacgcc acatcaggca tggcagagac agattaaagg tgaagtagaa accattgcgc
    54241 tggaacaact ggtcggtaga gtatcggcaa atatgatcct gccttatcca ccgggcgtac
    54301 cgctgttgat gccaggagaa atgctgacca aagagagccg cacggtactc gattttctac
    54361 tgatgctttg ttccgtaggg caacattacc ccggttttga aacggatatt cacggcgcga
    54421 aacaggacga agacggcgtt taccgcgtac gagtcctaaa aatggcggga taacttgcca
    54481 gagcggctta cgggcgagta acgtgctgtt aacaaataaa ggagacgtta tgctgggttt
    54541 aaaacaggtt caccatattg cgattattgc gacggattat gcggtgagca aagctttcta
    54601 ctgcgatatt cttggtttca cgctgcaaag cgaagtctat cgcgaagcgc gcgactcgtg
    54661 gaaaggggat ttggcgctta atgggcaata tgtgattgag cttttctctt ttccgttccc
    54721 gccggagcgc cccagccgac cggaagcttg cggcctgcgt catctggctt ttagcgttga
    54781 tgacatcgat gcggcagtgg cgcaccttga aagccataac gtgaagtgtg aagccatccg
    54841 tgtcgatcca tacacgcaaa aacgcttcac cttctttaac gatccggacg ggctgccgtt
    54901 ggaactgtat gagcagtaag gcttgtcatc gccgcatttg cccggtaacg tgccgggcat
    54961 tgctactgta aaatcgcacc atcatgacac tcacgctcaa tagacaactt ctcacctcac
    55021 gccagatttt ggtcgccttt agcggcgggc ttgactccac cgttctgctg catcagttgg
    55081 tgcagtggcg gacggaaaat ccgggcgtca ctctgcgcgc tattcatgtg catcacggtt
    55141 taagtgccaa tgccgatgcc tgggttacgc attgcgaaaa cgtctgccaa cagtggcagg
    55201 tgccgctggt ggtcgaacgc gtacaacttg cgcaagaggg gctggggatt gaggcccagg
    55261 cgcggcaggc gcgttatcag gcatttgccc gtaccctatt gcccggcgaa gtgctggtca
    55321 ccgcgcaaca tctcgacgat caatgtgaaa cctttctgct ggcgctaaaa cgcggtagcg
    55381 gccctgccgg gctttcggct atggcggaag tttcggagtt tgccggaaca cggcttatcc
    55441 gcccgttgct tgcccgcacg cggggggaac tggcgcagtg ggcattggcg catggtttac
    55501 gctggattga agacgaaagt aatcaggacg actcatacga tcgtaacttt ctgcgcctgc
    55561 gcgtagtgcc gttattgcag cagcgttggc cgcattttgc ggaagcaacg gcccgcagcg
    55621 ccgcactttg tgctgaacaa gagagtctgt tggatgaact gctggcggat gatttagcac
    55681 actgccaaac gtcgcagggg acgctgcaga ttgcgccaat gctggcgatg agtgatgccc
    55741 gccgcgcggc gattatccgt cgctggctgg cagggcagaa tgcaccaatg ccttcccgcg
    55801 acgcgctggt gcggatctgg caggaagtgg cgctggcgcg ggaagatgcc tccccctgtt
    55861 tacgcttggg cgcgtttgaa atccgccgct atcagtcgca actgtggtgg attaaatccg
    55921 tcaccgggca aagtgaaacc attgtgccgt ggcagacgtg gctacaaccg ctggaattac
    55981 cggcggggct gggaagcgta cagcttactg cgggaggcga tattcgccct ccgcgtgcag
    56041 acgaagcggt cagcgtgcgt ttcaaatcgg caggattgct gcatattgtc gggcgcaacg
    56101 gcggacgtaa gctgaagaaa atctggcaag agttaggcgt gccgccgtgg ctacgtgaca
    56161 ccacgccact gctgttttat ggcgaaacgc tgattgcggc ggcaggggta tttgtgacgc
    56221 aagaaggtgt ggctgaaggt gagaatggcg taagttttgt ctggcagaaa acgcttagtt
    56281 aagtgaaagc cggataagac gcatcaaacg tcgcatccgg cgaaagtcaa tcaggactcg
    56341 ctcaccacca ccgtaccgat ttccgggtgg ctaaagctgg taattttatc cagacgtagc
    56401 tcacgggttt cgccagcggc ctcgacgacc agatactcca catttttgcg ggagactaaa
    56461 tcgctggctt ttgcctgcaa tttttcgcca tctttcagct caagtgtcag cattaaatga
    56521 tgctggcagg cgagctcaag attatcgtaa tcatcacaat tgattggttg atacgtatca
    56581 ttcattaaca taatcgctca ccagtaagtt tgccgcagcg tatgctgctt tttccctgac
    56641 agcctcagaa agggcgtcgt cggcagccat ttcattcagc actttcaaaa cgcagcccag
    56701 cgcgtccgga acgtatccta agtctccgct ggcgatttcc gcgtaccgct tgcgtattaa
    56761 ctcacaatat ttttccacat gccctcctgt cagcacactg acttaaccgt ggatgcaagt
    56821 ctaagcctac gaagataaac tctgtttcgc aaggtgacta taccacactc atttctgcaa
    56881 tatcagcgcc gcaactgcac gtattccgtt acaatggcct cctgattcga aaggagtttt
    56941 cttatggcgc ttaaagcgac aatttataaa gcgacggtta atgtggccga tctcgaccgc
    57001 aaccagtttc tcgatgcctc tctgacgctg gcgcgccacc cttcagaaac ccaggagcgt
    57061 atgatgctgc gcctgctggc gtggctgaaa tatgctgatg aacgtctgca atttacccgt
    57121 ggtttgtgtg ccgatgatga gccggaagcg tggctgcgta acgatcacct gggcattgat
    57181 ttgtggattg agctggggct gccggatgag cggcggatta agaaagcctg cacccaggcc
    57241 gcagaagtgg cgctgtttac ctataatagt cgggcggcgc aaatctggtg gcagcaaaat
    57301 cagagcaaat gtgtgcagtt tgccaatctt tccgtctggt atctggacga tgaacaactg
    57361 gcgaaagtaa gcgcctttgc cgatcgtacc atgacgctgc aggcaacgat tcaggatggc
    57421 gtgatctggt tatcggacga taagaataat ctggaagtta acttaaccgc ctggcaacaa
    57481 ccttcatgat tgtgatttcc cgacatgttg ctattcccga tggtgagctt gagatcaccg
    57541 ccattcgtgc gcagggcgcg ggcgggcagc atgttaataa gacctcaacg gccattcatc
    57601 tgcgttttga cattcgggcg tccagcctgc cagagtatta caaagagcgt ctgctcgccg
    57661 ccagccatca tttgatcagc agtgatggcg tgattgtcat taaggcacag gaataccgca
    57721 gtcaggaact gaaccgcgaa gccgcgctag cccggctggt ggcagtgatt aaagatttaa
    57781 caacagaaca aaaagcccga cgacccacgc ggcccacccg tgcatcgaaa gagcgcaggc
    57841 tggcatcgaa agcacaaaaa tcaagcgcga aggcgatgcg cggcaaagta cgcagcggtc
    57901 gggaataaaa agaaggaata gatggtgaaa aaagcgatag tgacagcgat ggctgtaatc
    57961 agcctcttta ctctgatggg atgtaataac cgggccgaag tcgatacgct ttctccagca
    58021 caggctgccg aactgaaacc gatgccgcaa agttggcgcg gcgtgctgcc gtgtgctgat
    58081 tgtgaaggaa tcgaaacctc tctgttcctc gaaaaagacg gaacatgggt gatgaatgag
    58141 cgttatctcg gtgctcgtga agaaccttcc tccttcgctt cccacggtac atgggcgcga
    58201 accgctgaca agctggtatt aaccgacagc aaaggtgaaa agtcatatta tcgggcgaaa
    58261 ggcgatgcgc tggagatgct cgatcgtgaa ggcaatccga ttgaatcgca gttcaactat
    58321 acgctggaac cggcacaatc cagtttacct atgacgccga tgaccctgcg aggcatgtat
    58381 ttttatatgg ctgatgcggc gaccttcact gattgcgcga ccggaaaacg tttcatggta
    58441 gcgaataacg cagagctgga gcgtggctac ctggctgcgc gcggtcacag tgaaaaaccg
    58501 gtgttactgt cagtagaagg tcactttacg cttgaggcta atccggatac tggtgcgcca
    58561 accaaagtat tagcgcccga tacggcgggt aaattttacc cgaataagga ttgcagtagt
    58621 ttggggcagt aaacctgctt aaggcagaaa caaacgcaaa acaggccaga aggatatatt
    58681 tcaacatttt gaatttgcac gttttttgta ggccggataa ggcgtttacg ccgcatccgg
    58741 caatggtgct caacgcctga tgcgacgctg gcgcgtctta tcatgcctac aacccccctc
    58801 ataccttaag gcggataagg catttacttt atcaccgggt caaaccaaca aagcgacccg
    58861 ccttgatata aatccctggc ttcaggtgcc caacatactg taactgcgtt tctggcttaa
    58921 acgcagagac atcaccaata cgcatatgca tcagatcggc agggctaatc cagcccgatt
    58981 gcgccagtgt aagtggatgt ccggctttgg caaatgcatc agtgacaaat tccgaacaaa
    59041 accacgactt tttgtctcct tcgcccacac tgcttaactg cgctttcgcc aggccgctga
    59101 cgcactgctg gcgaaaatcc tcggagaact gattcagtga gcacatctgg cgagtcacca
    59161 taaagggaat aaattcgaca atgccgcgat agttataacc gctatctttg attttattgg
    59221 caaacgcggt gatatctgtg gcttgttgcg gggtaagatc cgggactcgt aagacgaaaa
    59281 gcttatcact atgcttcatc gcttttttaa gggaaacaat ctggacgcca gcgcctgtcg
    59341 cttctgcaac gttattatca cccagaaaga ttgcaacgtg actcacagag gaagtgctga
    59401 agacgcggat tccaaatgag gttaccccaa ggcttgagga gaacagcaaa tcgccgggtt
    59461 tgagatcagg tgccgttatt tcttttattg attgttcggt gaaagagctt tgatgctgga
    59521 atttgacagc ccatgttttt gcctcggcat ctactgctgt ggctgatggg gctggctgat
    59581 atcaacggta caagccgaaa gtaaaagaaa gctggggaga agcaggcggc agtacgcctt
    59641 tggtttatcc attttataca atccatgtaa aaaagggccc tgaaattcag gaccctttct
    59701 ggcatcagcc tttaatctgt ttcaccagat attcgacgat gtcaccagtc ttaattaact
    59761 gtttctcgcc gttgcgacga tatttatatt cgatatcgtc gttgtcgagg ttacggtcgc
    59821 ccagcacaat agtgtgcgga ataccgatca gttccatatc agcaaacatc acgcccggac
    59881 gctctttgcg gtcatccagc agcacttcga taccttgtgc acgcagttcg ctgtacagtt
    59941 tctcagcaag ctcttgtacg cggaaggatt tgtgcatgtt catcggcaga atcgccacct
    60001 ggaacggcgc gatagcgtca ggccatacga tgccgcgttc gtcgtagttc tgctcaatcg
    60061 ccgcagctac cacacgcgtt accccgatac cgtagcaacc catcgtcagg atttggttac
    60121 ggccatcttc accctgtacg gaggctttca gtgcttcgga gtacttggta cccagctgga
    60181 agatgtgacc aacttcgata ccacgtttga tcagcagcgt accctggcca tccgggcttg
    60241 gatcgccagc caccacgtta cggatatctg caacttccgg ggtagcgaca tcgcgatccc
    60301 agttgatacc gaagtagtgt ttaccatcga tgttagcacc agcagcgaaa tcactcatcg
    60361 ccgcaacggt acggtcaatc accaccggaa tcggcatgtt taccggaccc agtgaacccg
    60421 gaccggcttt aaccacagca cgaatttctt cttcggtcgc gaaagtcagc gggcttgcaa
    60481 cctgcggcag tttttctgct ttaacttcgt tcagctcgtg atcaccgcgc accagcagcg
    60541 caaccagcgg gaagctgctg ccttcaaccg ctttaaccag cagagtctta accgttttct
    60601 caatcggcag attgaactgt tcaaccagtt ccgcgatggt tttcgcgttc ggcgtatcaa
    60661 ccagcgtcat ttcctgggta gcagcagcgc gcggttcttt cggcgcgata gcttctgcca
    60721 gttcaatgtt cgctgcatag tcagaggtgt cggagaagac cacatcgtct tcaccgctct
    60781 gcgccagcac ctggaattcg tgagaggcgc tgccgccgat agaaccggtg tcggcttgca
    60841 cggcgcggaa atccagcccc atgcggctga agattttgct gtaggccgca tacattgcat
    60901 cgtaggtttc ctgcagggat tcctgagaag tatggaaaga gtaagcatct ttcatcagga
    60961 attcgcggga acgcatgacg ccgaaacgcg gacgcacttc gtcgcggaac ttggtctgga
    61021 tctgatagaa gttcagcggc agctgtttgt aagagctaag ctcgttacga atcaggtcag
    61081 tgataacttc ttcatgagtt gggccgagta cgaacggacg ctcgccacgg tcaacaaaac
    61141 gcagcagttc cggaccgtac tgttcccaac gaccactctc ttgccacaaa tcggctggct
    61201 gaaccaccgg catcgacacc tcgattgcac cggcgttgtt catctcttca cgcacgatgt
    61261 tttcgacttt tttcagaacg cgcacgccgg tcggcagcca ggtatataac ccggaggcca
    61321 gcttgcggat catcccggcg cgcagcatca gctgatggct gatcacctcg gcgtcggcag
    61381 gtgtctcctt gagagtggag agcaggtatt ggctagtacg catgttgtta cggttccagt
    61441 tggaaggtag aacaggctca aggcgagcct gggacaaaaa aagtgattta gtttaccagt
    61501 gcaaaagaaa tgtcaaaaga gaagggcgtg aatttaacgc ggttccagcg caaagacttc
    61561 aaaacctgcg tcggtgacgc gccagcgaac gttaaaatca tgtagccaga cggcataggt
    61621 tttgcccgtt tcctcacctt tatgataggc cgggcgcggg tcctgcgcca gtacttcgcg
    61681 gataaacagc gttaactgcg gataacgctt ctccagcgtc aaaagctgct tttcgacctc
    61741 tgcggtaaaa ctcaccgcca tctctgcagc tggcgcactt tgcgcatagc tggcactggc
    61801 atcgggaagc gattcggcaa aggggagata cggtttgata tccactaccg gcgtaccatc
    61861 gaccagatcc agactgccga gcttcagaat cacgctgtct ttatggcaaa caacctcttt
    61921 cagctctacc agcgacatac caattgggtt agggcggaaa gtagagcgtg ttgcgaaaac
    61981 ccccattctg gcgttaccgc cgaggcgcgg tggacgcaca gtcggacgcc agccgccttc
    62041 catcgtttga tgaaagacga aaaggatcca taaatggctg aacgcttcca ggccgcgaac
    62101 ggcgtcggcc tggttgtagg gagcaatgag atgcagttcg ccgttggcgc tttttaccag
    62161 acctggctgg cgcggaacgg cgaatttttc tttatagggc gagcgaataa cgcctatttg
    62221 ctcgaactgg aaactgctca tttcgccgta atgttaagcg cagagccgat acatacagcc
    62281 tgacgatagc agcctggcgt accgctggtg acttcgcagc tatgcagtaa taccgcattg
    62341 gctttcattt tagaggcgtt gatttgcatc cgcttacgcg cggttggaat gctcggcgga
    62401 gagtcctgat tagaggcctg gcaagagtcg ccactgactt caccgagatc gcggaacggt
    62461 ttgccgacta attcttctgc attggtataa attcggaccg gcgtggcgcg cggcgctttc
    62521 ggttttgcag gctccgcttt cggctggggt gcagtgcttt gaacgggttc gacaggggat
    62581 ctgcttaaca tggaacagcc gcttagcatg agtgctacta aacagatcgg taaagcacgc
    62641 atagtatttc ctcaatgtat gatcaaaacg tcaatattga atcaggagct tgtaaaaatg
    62701 acaagacggg caagtgccca tcctgaatga tattacaaat tgtggaaaca gcctaaaaat
    62761 taccagcctt taacagcgcc gccgttaaac actttgtttg ctgcttcgta aacttcatca
    62821 gactgataag cctggacgaa tttcttcacg ttctcggcgt ctttgttatc ttcacgcgtt
    62881 acgatcaggt ttacgtacgg ggagtcttta tcttcgacaa agataccgtc tttcgctgga
    62941 gtcaggccaa tctggctggc ataggtggta ttgataactg ccagagcgat ttgtgcgtcg
    63001 tccagagatc gaggcagctg cggtgcttcc agctcaacaa ttttcagatt ttttgggttc
    63061 tcaacaacat caagtacggt cggcagcagg ccaacgccat ctttcagttt gatcaagccc
    63121 actttttgca gcagcagcag tgaacgacca aggttagttg gatcgtttgg cacggcaacc
    63181 tgcgaaccat cctgcagttc atccagtgat ttgattttct tggagtaacc agcaatcgga
    63241 taaacaaaag tgttgcctac tgcgaccagt ttgtagccac gatctttcag ttgctgatca
    63301 aggtacggtt tatgctggaa ggcgttggcg tcgatatcgc ctttgctcaa tgcttcgttt
    63361 ggcagaacat agtcgttgaa ggttaccagc tcaacgtcca ggccatattt gtctttcgca
    63421 actttctgcg cgacttctgc aacctgctgt tcggcaccaa caatcacgcc gactttaatg
    63481 tggtttggat ctttttcatc ctgaccgcag cctaccagtg ccagtgatcc aatcagggct
    63541 cccactgccg caaaggtttt gaatttgaac gccatacctt attccttctt caattattta
    63601 tgttgtgttg aacgttactt gcgagtgaca gcccggacga tgcggtcgcc tgcgaactga
    63661 attaaataaa ccagaatgac cagcaatacc agtaccgtat tcatcaccgt cgcgttatag
    63721 ccgatgtagc catactgata gccaatctga cctaaaccac cggcaccgac agcaccaccc
    63781 atcgcggaat aaccgactag ggtaatcagg gtgatagttg ccgcattcac cagacccggc
    63841 aatgcttccg gtaacagcac tttacggacg atctgcatcg gcgtggcacc cattgcacgg
    63901 gaagcttcaa ttaacccggt tgggatctcc agcagagcgt tctcgaccat acgggcaata
    63961 aacggtgctg caccaacggt taacggaaca atcgctgcct gcaaaccaat cgatgtacca
    64021 acaataacgc gggtaaacgg aatcatccat accagcaaga taatgaacgg gatagaacgg
    64081 aaaatgttca caatcgcaga aacggtacga tacagcttcg cgttagcaat aatttgcccc
    64141 ggacgcgtga cataaagcag aacgccaacc ggcagaccaa tcacaaagcc aaaaaaaccg
    64201 gatacgaagg tcattgccag cgtttcccat acgccacgaa ccagcagcca catcatcggc
    64261 tcagacataa cccagtacct ctacttttac atggtgttcc tgcagccagg caatggcggc
    64321 ttgcgtatct tgttgtgtgc cgtgcatttc agtcagcatg atgccgaact taacgccacc
    64381 ggcgtagtcc atctgcgcgc taataatgtt gttgttgacg ttgaaacgac gcgcggtttc
    64441 agaaagcagt ggggcatcga ccgattgacc ggtaaactcc agacgcagca tcggcacgca
    64501 gtcagtaaat ggctccgctt gcagacgttc ctggtaatct tccgggatat ccagatgcag
    64561 ggtcgactga ataaacttct gcgccagcgg cgttttagga tgcgagaaca cttcacttac
    64621 cgtgtcctgc tcgatcagtt cgccattgct gatgaccgcc acgcaatcac aaatacgctt
    64681 cacaacgtcc atttcgtggg tgatcaacag aatcgtcaaa cccagacggc ggttaatgtc
    64741 tttcagcagt tcgagaatag aacgtgtcgt tgccgggtcc agcgcgctgg tggcttcatc
    64801 acacagcaat actttgggat tgctggctaa tgcacgggca atcgccacac gttgtttctg
    64861 cccaccggaa agattcgacg ggtagctatc atgcttatcg ccaagaccaa ccaatgacag
    64921 caattccgtc acgcgacgtt tgatctcgtc tttcggtgtg ttgtccagct ccagcggcag
    64981 agccacgttg ccaaaaacag tacgcgaaga gagcaggtta aaatgctgga aaatcatacc
    65041 aatctggcgg cgagctttgg tcaactcgga ttctgacagc gtggtcagtt cctggccatc
    65101 gaccagcacg ctaccctcgg ttgggcgctc cagcaggttt acacaacgta taagcgtact
    65161 cttacccgcg cctgaggcac cgataacgcc ataaatttgt ccagctggca catgcaggct
    65221 gacgttgttc aacgcctgga tgatgcgggt gccctggtgg aacactttgg tgatattcga
    65281 aagttttatc attgattatt tattatcgtc attaagttag tcgtggcatc tcgaatgcct
    65341 gaaacgggca acgccgtcaa tgaaatggat gttaaggcat ccagacgtct aaatcaatca
    65401 ggtttatgcg aagagcactt tcttgcaggt cgaaacatgc gatactagcg tcacatgcct
    65461 tattaaggag ctataaaagg tggcaaagag cgtacccgca atttttcttg accgtgatgg
    65521 caccattaat gtcgatcacg gctatgtcca tgagatcgac aactttgaat ttatcgacgg
    65581 tgttattgac gccatgcgcg agctaaaaaa aatgggcttt gtgctggtgg tagtaaccaa
    65641 ccagtctggc attgctcgcg gtaaatttac cgaagcacag tttgaaacgc tgaccgagtg
    65701 gatggactgg tcgctggcgg accgagatgt cgatctggat ggtatctatt attgcccgca
    65761 tcatccgcag ggtagtgttg aagagtttcg ccaggtctgc gactgccgta aaccacatcc
    65821 ggggatgctt ttgtcagcac gcgattattt gcatattgat atggccgctt cttatatggt
    65881 gggcgataaa ttagaagata tgcaggcagc ggctgcggcg aacgtgggaa caaaagtgct
    65941 ggtgcgtacg ggtaaaccta ttacgcctga agcagaaaac gcggcggatt gggtgttaaa
    66001 tagcctggca gacctgccgc aagcgataaa aaagcagcaa aaaccggcat aatgattaaa
    66061 agatgagcga ttgaaataaa aatgcatttt tccacttgtc ttcctgagac gactccctat
    66121 aatgcgcctc catcgacacg gcggatgtga atcacttcac acaaacagcc ggttcggttg
    66181 aagagaaaaa tcctgaaatt cagggttgac tctgaaagag gaaagcgtaa tatacgccac
    66241 ctcgcgacag tgcgctaaag tgcgtcgcaa ctgctcttta acaatttatc aggcaatctg
    66301 tgtgggcact cgaagatacg gattcttaac gtcgcaagac gaaaaatg
//
LOCUS       DAJVUP010000005        64615 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.005, whole genome shotgun sequence.
ACCESSION   DAJVUP010000005 DAJVUP010000000
VERSION     DAJVUP010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 64615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 64615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..64615
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.005"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..94
                     /locus_tag="OQQ75_000313"
     CDS             <1..94
                     /locus_tag="OQQ75_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1974761.1"
                     /translation="LNAVLDYIDAVAATDTSTAPDVIWPELPEA"
     gene            complement(66..503)
                     /locus_tag="OQQ75_000314"
     CDS             complement(66..503)
                     /locus_tag="OQQ75_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1974762.1"
                     /translation="MFYSPSLNIFVNPALKDDYINANSWPDDALAVSDDVYNEFAINT
                     PPDDKIRVAGKNGLPTWALIPPPSYEELIQQAESERQLLLNQANEYMNSKQWPGKAAI
                     GRLKGEELAQYNLWLDYLDALELIDTSSAPDIEWPTPPAVQAR"
     gene            complement(505..891)
                     /locus_tag="OQQ75_000315"
     CDS             complement(505..891)
                     /locus_tag="OQQ75_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1974763.1"
                     /translation="MPVSHYLCIFLNVGLGELSLAGTASGVIGLNGYVTIPLIISGSR
                     RTLIIQWGQARFGGSGGEDAGYLNDFPFAFPSACYGMIVSHVGHTPSGAGILSASAIT
                     SNQFRGFSSIATAANAVLGRYIAIGV"
     gene            922..1488
                     /locus_tag="OQQ75_000316"
     CDS             922..1488
                     /locus_tag="OQQ75_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1974764.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKPDRPG
                     LKKLLRTLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPMGR
                     FFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTTEQWAQIGRLLEAGES
                     RQRIALIFDVGVSTIYRKFPANESNESP"
     gene            1631..2803
                     /locus_tag="OQQ75_000317"
     CDS             1631..2803
                     /locus_tag="OQQ75_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HCS1974765.1"
                     /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFP
                     LNKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIG
                     AVTAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAY
                     GCKTVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTG
                     WHKSLSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDITTLIRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLMDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA"
     gene            2813..3328
                     /locus_tag="OQQ75_000318"
     CDS             2813..3328
                     /locus_tag="OQQ75_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS1974766.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMP
                     GAVDVDLGLDDSALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVD
                     LMEAHRNALGL"
     gene            3383..3685
                     /locus_tag="OQQ75_000319"
     CDS             3383..3685
                     /locus_tag="OQQ75_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS1974767.1"
                     /translation="MSDKQTEKTIQLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA"
     gene            3700..3819
                     /locus_tag="OQQ75_000320"
     CDS             3700..3819
                     /locus_tag="OQQ75_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1974768.1"
                     /translation="MADIATIFHWPPSVTDVMPLTEVLEWRDKAIQRSGASHE"
     gene            3812..6889
                     /locus_tag="OQQ75_000321"
     CDS             3812..6889
                     /locus_tag="OQQ75_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1974769.1"
                     /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIK
                     QLDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQR
                     LAVQRLEERQKKLQQQTALVRAELYRAGISANDGASATARITRETMRYNRQLSEQEAR
                     LRRVGEQQRKMHAARGAYARRLEVRDRIAGAGATTTAAGLAMGAPVMAAVKSYTSMED
                     AMKGVAKQVNGLRDDNGNRTARFYEMQGAIKAASEQLPMENGAVDFAALVEGGARMNV
                     ANPDDSWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGD
                     ALNYLDDNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANA
                     MVRELSIATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLS
                     AMTMLFGKEFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLV
                     KTGAQNTFSSLGETLRQPLMDILYTVKSVTGALRRWVEANPELTGTLMKVAAVVAAVT
                     VGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTATVTRTSNALSWLAGAPLALLR
                     RGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMN
                     PLAVLRGGLAATGTVLRMLASGPLAMLRVALYAVSGLLGALLSLIGLVVTALAGVALV
                     VWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLLTPV
                     KSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKL
                     PESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIV
                     NGPANVTSRRNTAALAAVVAGMMGVAATPAELPPLHPLALPAKGGEAMVSRAATVPPV
                     QRIEAPMQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA"
     gene            6886..7371
                     /locus_tag="OQQ75_000322"
     CDS             6886..7371
                     /locus_tag="OQQ75_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1974770.1"
                     /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLG
                     PDNDMLTLSGVLMPEVTGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTK
                     TEFFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQGTATSALSDISKTVGGLL
                     S"
     gene            7368..8468
                     /locus_tag="OQQ75_000323"
     CDS             7368..8468
                     /locus_tag="OQQ75_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS1974771.1"
                     /translation="MNFSSELLNKGNKTPAFSISIEGRDITTVLDNRLMGLTLTDNRG
                     FEADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLT
                     IRARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKLVEHIDQTN
                     ESDGSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGNSHRFTL
                     ADRGAYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVL
                     NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPLDDAE
                     WTITTLTHTVSPDNGFTTSLELEVRIDDFEME"
     gene            8559..8777
                     /locus_tag="OQQ75_000324"
     CDS             8559..8777
                     /locus_tag="OQQ75_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001504085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1974772.1"
                     /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHET
                     FVRSIATPKESNPVQPHPMKSGQVALSL"
     gene            complement(9013..10698)
                     /locus_tag="OQQ75_000325"
     CDS             complement(9013..10698)
                     /locus_tag="OQQ75_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate:alanine antiporter"
                     /protein_id="HCS1974773.1"
                     /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL
                     VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS
                     ALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLS
                     LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY
                     RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP
                     DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV
                     IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI
                     GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM
                     VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA
                     MMGARTCAPAMEIISDTAHSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG"
     gene            10968..11345
                     /locus_tag="OQQ75_000326"
     CDS             10968..11345
                     /locus_tag="OQQ75_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YbjM"
                     /protein_id="HCS1974774.1"
                     /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF
                     FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW
                     CALGALCFLFISSLFKPQHRKNQ"
     gene            complement(11375..11632)
                     /gene="grxA"
                     /locus_tag="OQQ75_000327"
     CDS             complement(11375..11632)
                     /gene="grxA"
                     /locus_tag="OQQ75_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 1"
                     /protein_id="HCS1974775.1"
                     /translation="MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT
                     KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA"
     gene            11792..12079
                     /locus_tag="OQQ75_000328"
     CDS             11792..12079
                     /locus_tag="OQQ75_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1418 family protein"
                     /protein_id="HCS1974776.1"
                     /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV
                     QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH"
     gene            12063..12774
                     /gene="nfsA"
                     /locus_tag="OQQ75_000329"
                     /pseudo
     CDS             12063..12774
                     /gene="nfsA"
                     /locus_tag="OQQ75_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308958.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase NfsA"
     gene            12835..13737
                     /gene="rimK"
                     /locus_tag="OQQ75_000330"
     CDS             12835..13737
                     /gene="rimK"
                     /locus_tag="OQQ75_000330"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HCS1974777.1"
                     /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA
                     ASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR
                     SMQLLARQGIDLPVTGIVHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA
                     ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGG
                     AASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI
                     DIAGKMIRWIERYATTEYCLKTGG"
     gene            13825..14301
                     /locus_tag="OQQ75_000331"
     CDS             13825..14301
                     /locus_tag="OQQ75_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HCS1974778.1"
                     /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF
                     DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC
                     QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH"
     gene            14652..15764
                     /gene="potF"
                     /locus_tag="OQQ75_000332"
     CDS             14652..15764
                     /gene="potF"
                     /locus_tag="OQQ75_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HCS1974779.1"
                     /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD
                     TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
                     KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW
                     DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR
                     PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF
                     FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPG
                     IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK"
     gene            15859..16992
                     /gene="potG"
                     /locus_tag="OQQ75_000333"
     CDS             15859..16992
                     /gene="potG"
                     /locus_tag="OQQ75_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter ATP-binding subunit
                     PotG"
                     /protein_id="HCS1974780.1"
                     /translation="MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYK
                     GEIFALLGASGCGKSTQLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYAL
                     FPHMTVEQNIAFGLKQDKLPKAEIASRVHEMLGLVHMQEFAKRKPHQLSGGQRQRVAL
                     ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG
                     RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERHEDGLVLYSPGLV
                     HPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHV
                     RLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV"
     gene            17002..17955
                     /gene="potH"
                     /locus_tag="OQQ75_000334"
     CDS             17002..17955
                     /gene="potH"
                     /locus_tag="OQQ75_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotH"
                     /protein_id="HCS1974781.1"
                     /translation="MNTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF
                     LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS
                     LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN
                     NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA
                     LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ
                     EFFNNRDWPVAAAVAIIMLLLLIVPIMWFHKHQQKSVGEHG"
     gene            17952..18797
                     /gene="potI"
                     /locus_tag="OQQ75_000335"
     CDS             17952..18797
                     /gene="potI"
                     /locus_tag="OQQ75_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HCS1974782.1"
                     /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW
                     AGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILRTIAAVVLVRFGRFRGSNGF
                     AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS
                     SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV
                     SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ
                     RARHG"
     gene            18857..19345
                     /locus_tag="OQQ75_000336"
     CDS             18857..19345
                     /locus_tag="OQQ75_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjO family protein"
                     /protein_id="HCS1974783.1"
                     /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF
                     NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI
                     TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ
                     LQ"
     gene            19386..20513
                     /gene="rlmC"
                     /locus_tag="OQQ75_000337"
     CDS             19386..20513
                     /gene="rlmC"
                     /locus_tag="OQQ75_000337"
                     /EC_number="2.1.1.189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HCS1974784.1"
                     /translation="MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEW
                     CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK
                     PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQE
                     QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA
                     SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAA
                     ELGLTRLQFQALDSTQFATAQGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC
                     NAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ"
     gene            complement(20688..21419)
                     /gene="artJ"
                     /locus_tag="OQQ75_000338"
     CDS             complement(20688..21419)
                     /gene="artJ"
                     /locus_tag="OQQ75_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein ArtJ"
                     /protein_id="HCS1974785.1"
                     /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV
                     GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT
                     PYYENSAVVIAKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF
                     IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE
                     KLNNALAAIKADGTYQKINDQWFPQ"
     gene            complement(21710..22378)
                     /gene="artM"
                     /locus_tag="OQQ75_000339"
     CDS             complement(21710..22378)
                     /gene="artM"
                     /locus_tag="OQQ75_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HCS1974786.1"
                     /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL
                     VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS
                     AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK
                     STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF
                     ERRN"
     gene            complement(22378..23094)
                     /gene="artQ"
                     /locus_tag="OQQ75_000340"
     CDS             complement(22378..23094)
                     /gene="artQ"
                     /locus_tag="OQQ75_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HCS1974787.1"
                     /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESEKWRPVA
                     WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS
                     PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH
                     ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL
                     SQYILKRIDLRATRFERRPS"
     gene            complement(23101..23832)
                     /gene="artJ"
                     /locus_tag="OQQ75_000341"
     CDS             complement(23101..23832)
                     /gene="artJ"
                     /locus_tag="OQQ75_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1974788.1"
                     /translation="MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIV
                     GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT
                     PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK
                     LDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ
                     KLNTALEKVKKDGTYETIYNKWFQK"
     gene            complement(23850..24578)
                     /gene="artP"
                     /locus_tag="OQQ75_000342"
     CDS             complement(23850..24578)
                     /gene="artP"
                     /locus_tag="OQQ75_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HCS1974789.1"
                     /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL
                     LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN
                     LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
                     QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH
                     IVEQGDASCFTEPQTEAFKNYLSH"
     gene            complement(24796..25311)
                     /locus_tag="OQQ75_000343"
     CDS             complement(24796..25311)
                     /locus_tag="OQQ75_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1974790.1"
                     /translation="MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPGNV
                     AQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPES
                     ARVASASTIPNRDARNIPLRVDLKQGDQSWQDEVLMIQEGQCWVIDDVRYLGGSVHAT
                     AGTLRQSIENR"
     gene            25437..25760
                     /locus_tag="OQQ75_000344"
     CDS             25437..25760
                     /locus_tag="OQQ75_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HCS1974791.1"
                     /translation="MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG
                     GRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTA
                     VKTRR"
     gene            25757..26587
                     /gene="amiD"
                     /locus_tag="OQQ75_000345"
     CDS             25757..26587
                     /gene="amiD"
                     /locus_tag="OQQ75_000345"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiD"
                     /protein_id="HCS1974792.1"
                     /translation="MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRI
                     KVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI
                     SAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKP
                     ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL
                     LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
                     "
     gene            complement(26584..27594)
                     /locus_tag="OQQ75_000346"
     CDS             complement(26584..27594)
                     /locus_tag="OQQ75_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415389.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1974793.1"
                     /translation="MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMG
                     AEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV
                     AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMFSQANPQ
                     TRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLA
                     SQEACDKLPSGRVYNITNGEHRTLCSIVQKLIDELNIDCRIRSVPYPMLDMIARSMER
                     FRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKL
                     PR"
     gene            complement(27693..29123)
                     /locus_tag="OQQ75_000347"
     CDS             complement(27693..29123)
                     /locus_tag="OQQ75_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2867 domain-containing protein"
                     /protein_id="HCS1974794.1"
                     /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL
                     ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVP
                     VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR
                     DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQ
                     FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL
                     RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT
                     SASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVD
                     SWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWL
                     LMIPAHLFIFRGMAKQIARLAEQSTD"
     gene            complement(29134..30135)
                     /gene="ltaE"
                     /locus_tag="OQQ75_000348"
     CDS             complement(29134..30135)
                     /gene="ltaE"
                     /locus_tag="OQQ75_000348"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HCS1974795.1"
                     /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA
                     ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQP
                     IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN
                     LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI
                     RWRKMAGGGMRQSGILAAAGMYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTN
                     MLFVRVGEENAAALGEYMKVRNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR"
     gene            complement(30172..31890)
                     /gene="poxB"
                     /locus_tag="OQQ75_000349"
     CDS             complement(30172..31890)
                     /gene="poxB"
                     /locus_tag="OQQ75_000349"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HCS1974796.1"
                     /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW
                     MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI
                     PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
                     GDVALKPAPEGATTHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE
                     LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF
                     PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDK
                     ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK
                     MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK
                     LPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD
                     EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA
                     KTNWLR"
     gene            complement(32023..32991)
                     /gene="hcr"
                     /locus_tag="OQQ75_000350"
     CDS             complement(32023..32991)
                     /gene="hcr"
                     /locus_tag="OQQ75_000350"
                     /EC_number="1.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH oxidoreductase"
                     /protein_id="HCS1974797.1"
                     /translation="MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYAL
                     VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG
                     EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVHTPQDVIFADEW
                     RNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALG
                     VTRFFKEKFFTPVAKAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG
                     VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA"
     gene            complement(33003..34655)
                     /gene="hcp"
                     /locus_tag="OQQ75_000351"
                     /gene_synonym="priS"
     CDS             complement(33003..34655)
                     /gene="hcp"
                     /locus_tag="OQQ75_000351"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HCS1974798.1"
                     /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG
                     LSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC
                     LAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK
                     GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSIL
                     DAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP
                     AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVSAYDDRIWTRS
                     IVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVS
                     REKLRHIFLLGGCDGARGERHYFTDFATIVPDDCLILTLACGKYRFNKLEFGDIEGLP
                     RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK
                     NIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA"
     gene            complement(34799..35698)
                     /gene="lysO"
                     /locus_tag="OQQ75_000352"
     CDS             complement(34799..35698)
                     /gene="lysO"
                     /locus_tag="OQQ75_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415395.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lysine exporter LysO"
                     /protein_id="HCS1974799.1"
                     /translation="MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFM
                     GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRI
                     AMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQ
                     IVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFG
                     PVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMV
                     PAAIVHGFILSLLVPILIAFFSA"
     gene            complement(36192..36887)
                     /gene="aqpZ"
                     /locus_tag="OQQ75_000353"
     CDS             complement(36192..36887)
                     /gene="aqpZ"
                     /locus_tag="OQQ75_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HCS1974800.1"
                     /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG
                     LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI
                     ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATAKFAPAG
                     FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII
                     GGLIYRTLLEKRD"
     gene            37313..38971
                     /locus_tag="OQQ75_000354"
     CDS             37313..38971
                     /locus_tag="OQQ75_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HCS1974801.1"
                     /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL
                     LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP
                     CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR
                     DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH
                     YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA
                     KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE
                     HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV
                     INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
                     RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAI
                     HRSSKPDLAIEVAIEAGRRGVDSVPTLLKKMFSRVLWLARGRAD"
     gene            complement(38968..39924)
                     /locus_tag="OQQ75_000355"
     CDS             complement(38968..39924)
                     /locus_tag="OQQ75_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HCS1974802.1"
                     /translation="MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQ
                     KFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEAL
                     RYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLKLTMMISMDKEGDSTILF
                     RNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVM
                     EAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHY
                     RLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG"
     gene            40075..41190
                     /gene="macA"
                     /locus_tag="OQQ75_000356"
     CDS             40075..41190
                     /gene="macA"
                     /locus_tag="OQQ75_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308991.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide transporter subunit MacA"
                     /protein_id="HCS1974803.1"
                     /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG
                     DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK
                     EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQI
                     GTIDAEIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA
                     DMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY
                     ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR
                     EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ"
     gene            41187..43133
                     /gene="macB"
                     /locus_tag="OQQ75_000357"
     CDS             41187..43133
                     /gene="macB"
                     /locus_tag="OQQ75_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding
                     protein/permease MacB"
                     /protein_id="HCS1974804.1"
                     /translation="MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASG
                     SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT
                     AEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM
                     NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHMVIIVTHDPQVAAQAERVIEIRD
                     GEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM
                     LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD
                     DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ
                     EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL
                     RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD
                     GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS
                     DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTAT
                     GILFGWLPARNAARLDPVDALVRE"
     gene            complement(43206..43430)
                     /gene="cspD"
                     /locus_tag="OQQ75_000358"
     CDS             complement(43206..43430)
                     /gene="cspD"
                     /locus_tag="OQQ75_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspD"
                     /protein_id="HCS1974805.1"
                     /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA
                     GQSVQFDVHQGPKGNHASVIVPVEVEAAVA"
     gene            43753..44073
                     /gene="clpS"
                     /locus_tag="OQQ75_000359"
     CDS             43753..44073
                     /gene="clpS"
                     /locus_tag="OQQ75_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HCS1974806.1"
                     /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI
                     DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
                     LEKA"
     gene            44104..46380
                     /gene="clpA"
                     /locus_tag="OQQ75_000360"
     CDS             44104..46380
                     /gene="clpA"
                     /locus_tag="OQQ75_000360"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HCS1974807.1"
                     /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL
                     EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE
                     VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE
                     EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV
                     GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ
                     DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD
                     RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR
                     HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK
                     NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
                     SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI
                     EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN
                     STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV
                     SQEARNWLAEKGYDRAMGARPMARVIQDNLKKTLANELLFGSLVDGGQVTVALDKEKN
                     ELTYGFQSAQKHKAEAAH"
     gene            complement(46724..46811)
                     /locus_tag="OQQ75_000361"
     tRNA            complement(46724..46811)
                     /locus_tag="OQQ75_000361"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46775..46777),aa:Ser,seq:gga)
     gene            complement(47065..47283)
                     /gene="infA"
                     /locus_tag="OQQ75_000362"
     CDS             complement(47065..47283)
                     /gene="infA"
                     /locus_tag="OQQ75_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HCS1974808.1"
                     /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVTVELTPYDLSKGRIVFRSR"
     gene            complement(47568..48272)
                     /gene="aat"
                     /locus_tag="OQQ75_000363"
     CDS             complement(47568..48272)
                     /gene="aat"
                     /locus_tag="OQQ75_000363"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HCS1974809.1"
                     /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR
                     GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC
                     ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS
                     RMENASKTALLVFCKEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR
                     LPNNFWVPRCLFSPQE"
     gene            complement(48314..50035)
                     /gene="cydC"
                     /locus_tag="OQQ75_000364"
     CDS             complement(48314..50035)
                     /gene="cydC"
                     /locus_tag="OQQ75_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HCS1974810.1"
                     /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS
                     ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK
                     LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMMVTIGLSFLDF
                     TLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA
                     SDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQP
                     GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVA
                     DRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDP
                     QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESL
                     RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAITRALLHDAPLVLLDEPTEGLDAT
                     TESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY
                     YQFKQGL"
     gene            complement(50036..51802)
                     /gene="cydD"
                     /locus_tag="OQQ75_000365"
     CDS             complement(50036..51802)
                     /gene="cydD"
                     /locus_tag="OQQ75_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HCS1974811.1"
                     /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF
                     MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV
                     LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP
                     SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF
                     GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL
                     DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH
                     PQCGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSL
                     LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDA
                     SEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLL
                     LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR
                     YAELSVAGGPFATLLAHRQEEI"
     gene            complement(51925..52890)
                     /gene="trxB"
                     /locus_tag="OQQ75_000366"
     CDS             complement(51925..52890)
                     /gene="trxB"
                     /locus_tag="OQQ75_000366"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HCS1974812.1"
                     /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL
                     TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG
                     EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE
                     EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV
                     TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ
                     TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK"
     gene            53435..53929
                     /gene="lrp"
                     /locus_tag="OQQ75_000367"
     CDS             53435..53929
                     /gene="lrp"
                     /locus_tag="OQQ75_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HCS1974813.1"
                     /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP
                     CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE
                     IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV
                     IKTR"
     gene            54064..58092
                     /locus_tag="OQQ75_000368"
     CDS             54064..58092
                     /locus_tag="OQQ75_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HCS1974814.1"
                     /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF
                     NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS
                     SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS
                     SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE
                     DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEE
                     EIIYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA
                     APVEPVTQTPPVTSVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQ
                     YNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPA
                     PEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV
                     VEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSAAAVP
                     PVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKR
                     IRVPTRRELASYGIKLPSQRAVEEKAREARRNQYDSGDQYNDDEIDAMQQDELARQFA
                     QTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDF
                     EFSPMKALLDDGPHEPLFTPIVEPVQQPQQLVAPQQQYQQPQQPVAPQQQYQQPQQPV
                     APQPQYQQPQQQVAPQPQYQQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSL
                     DLLTPPPSEVEPVDTFVLEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGV
                     KAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRD
                     NPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDV
                     RFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNL
                     AGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKK
                     VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD
                     QAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSD
                     SESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA
                     QGIVSEQGHNGNREVLAPPPFD"
     gene            58247..58858
                     /gene="lolA"
                     /locus_tag="OQQ75_000369"
     CDS             58247..58858
                     /gene="lolA"
                     /locus_tag="OQQ75_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010354356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HCS1974815.1"
                     /translation="MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQK
                     VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL
                     KDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQ
                     FSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK"
     gene            58869..60212
                     /gene="rarA"
                     /locus_tag="OQQ75_000370"
                     /gene_synonym="mgsA"
     CDS             58869..60212
                     /gene="rarA"
                     /locus_tag="OQQ75_000370"
                     /gene_synonym="mgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein
                     RarA"
                     /protein_id="HCS1974816.1"
                     /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA
                     IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR
                     NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
                     LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM
                     ADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY
                     WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA
                     QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA
                     HDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR"
     gene            60303..61595
                     /gene="serS"
                     /locus_tag="OQQ75_000371"
     CDS             60303..61595
                     /gene="serS"
                     /locus_tag="OQQ75_000371"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HCS1974817.1"
                     /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT
                     ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALT
                     IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS
                     RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF
                     HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR
                     DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG
                     FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG
                     LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG"
     gene            61834..64278
                     /gene="dmsA"
                     /locus_tag="OQQ75_000372"
                     /pseudo
     CDS             61834..64278
                     /gene="dmsA"
                     /locus_tag="OQQ75_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415414.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit A"
     gene            64289..>64615
                     /locus_tag="OQQ75_000373"
     CDS             64289..>64615
                     /locus_tag="OQQ75_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1974818.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMAC"
BASE COUNT        15885 a        16210 c        17410 g        15110 t
ORIGIN      
        1 acttaacgcc gtgttggatt acattgacgc ggtggcggca acagatacca gcaccgcgcc
       61 ggatgtcatc tggcctgaac tgccggaggc gtaggccatt caatatctgg agcactggag
      121 gtatcaatca gttccagtgc gtccagataa tccagccaca aattatattg cgccagttcc
      181 tcacctttca gacgaccaat agcggcttta ccgggccatt gtttactgtt catgtattcg
      241 ttggcctgat taagcaataa ttgcctttct gattctgcct gttgaataag ttcttcatat
      301 gatggtggag gtattagtgc ccatgtgggt aatccatttt ttcctgcaac acgaattttg
      361 tcatctgggg gcgtattgat tgcaaattca ttataaacat catcactgac agccagagca
      421 tcatctggcc atgaatttgc attaatgtaa tcatccttaa gcgcaggatt cacaaaaatg
      481 tttaaagatg gactataaaa catattaaac ccctatagcg atataacgac ctaatacagc
      541 atttgcagca gtcgctatgc ttgaaaaacc gcggaactga tttgatgtaa ttgcagaagc
      601 cgacaggatt cctgcgcctg aaggtgtatg ccccacatga ctaactatca tcccataaca
      661 tgctgacgga aaggcaaaag gaaaatcatt aagatatcct gcatcttcac caccagaccc
      721 accaaatctc gcctgccccc actgaataat cagtgttctc cgggaacctg aaataattaa
      781 cggaatcgtt acatacccat tcaggccaat gacacccgat gcagtgccag ccagagataa
      841 ttctcccaaa ccaacgttta agaaaatgca gagataatgg ctaactggca tcatccccgg
      901 tttttattca ggggattgat catgcttatt ggctatgtac gcgtgtcaac aaatgaccag
      961 aacaccgatt tgcaacgtaa tgcactgaac tgcgcgggat gtgagcggat ttttgaggat
     1021 aaaatcagtg gcactaagcc cgacagaccg gggcttaaaa aactgctcag gacactatcg
     1081 gcaggagaca cgctggttgt ctggaagctg gacagactgg gacgcagtat gcggcatctt
     1141 gttacgctga tagaagagtt gcgccagcgt ggtgtgaatt tccgaagcct gactgacagt
     1201 attgatacca gtaccccaat gggccgtttc ttttttcacg tcatgggggc tctggctgaa
     1261 atggaacgtg aactgatagt tgaacgtacc agagcagggc tggctgcagc tcgtgccaaa
     1321 ggcagagtag gtggacgccg tcctaagttg accaccgaac agtgggcaca gattggacgt
     1381 ttactcgagg ccggagaatc aagacagcgt attgcactga tttttgatgt gggcgtttct
     1441 accatttata gaaaatttcc ggcgaatgag agcaatgaat cgccctgagt cagtattatt
     1501 ttgatttttc ctgtaagcgg acaaataccg tcattttgtg tgaataacga cacaactgcg
     1561 cttagctgtt tgtcaggcac aatcacttca acatagggcg aagcctaatc caatcaggag
     1621 gttcgccact atggctcagg attaccacca cggggtgcgc gttgttgaag tcaacgaagg
     1681 cacccgatcc attaccacgg tgagcaccgc catcgtgggt atggtctgca cgggcgatga
     1741 tgccgatgca aaaatgtttc ctcttaataa acctgtgctg atcactgatg tgctgaccgc
     1801 cagcggtaaa gcgggtgagt ctggcacgct ggcccgttcg ctggatgcca tcgctgacca
     1861 ggcaaaaccc gtgaccgttg ttgtgcgtgt gccgcagggt gaaacggaag aagaaaccac
     1921 aaccaatatc attggcgcag tgaccgccga gggtaaaaaa acaggtatga aagccctgtt
     1981 atctgcccag tcacagctcg gcgttaaacc gcgcattctc ggcgtgccag gtcacgacac
     2041 gaaggcggta gctactgagt tgctgagcgt ggcgcaaagc ctgcgtggat ttgcttacct
     2101 gtcagcgtat ggttgcaaga cggtgcagga agcaatcact taccgtgaaa acttcagtca
     2161 gcgtgaagga atgctgatct ggcccgactt tactggctgg gacacggtgc tgaatgccga
     2221 agcaacggct tatgccaccg cccgtgcgct cggtctgcgc gctaaaattg atgagcagac
     2281 cggatggcac aaaagcctgt ccaacgtggg cgtgaacggt gtcaccggaa tttctgctga
     2341 tgtgttctgg gatctgcagg acccggcaac cgatgcaggt ctgcttaacc agaacgatat
     2401 caccacgctt atccgcaaag acggtttccg cttctggggt tcccgctgtc tgagcgatga
     2461 tccgctcttt gccttcgaaa actacacccg cacggcgcag gtgctgatgg acacgatggc
     2521 agaagcgcac atgtgggcgg tggacaaacc gctgaacccg tcgctggccc gcgacattat
     2581 cgaaggtatc cgcgccaaaa tgcgtagcct ggtcagtcag ggctatctca ttggtggtga
     2641 ttgctggctg gacgagtcgg tgaacgataa agacacgctg aaagccggga aactcaccat
     2701 cgattacgac tacacgccag tgccgccact tgaaaacctg atgctgcgtc agcgcatcac
     2761 cgatcagtac ctggtgaatt tctccagcca ggtcagcgcg taaggggaca acatggcttt
     2821 accacgcaaa ttaaaacacc tgaacctgtt taacgacggg aacaactggc aggggatcgt
     2881 tgagtcgctg acgctgccga aattcacccg caaatatgag aagtatcgcg gcggcggtat
     2941 gcccggagcg gtggatgtgg atctgggact ggatgacagt gcactggata cagaattttc
     3001 cattggtggt actgaactgc tgctgtttaa gcagatgggc aaagccacgg tggatggcat
     3061 ccagctgcgc tttaccggct ctattcagcg tgatgatacc ggggaagtgc aggccgtgga
     3121 gcttgtggtg cgtggacgtc acaaagaagt agattccggc gagtggaaga cgggcgaaag
     3181 caacactacc aaagtgacca gtaccaacag ctacgcgaag ctgaccatca atggtgaggt
     3241 gctctatgaa gtggacctga tcaacatggt ggaaattgtg gacggtgtgg acctgatgga
     3301 agcgcaccgc aacgccctcg gcctctgatg tatctgaacg gcgcggaatg ccgcgccaga
     3361 acctaattta caggacaaca aaatgagcga taagcagact gaaaagacca ttcaactgga
     3421 tactcccatc atgcgcggta aaacagaaat taccgaaatt gtgttgcgta aaccgcagtc
     3481 cggtgcgctg cgcggcacac gcctgcaggc cattatggat atggatgtga acgcgatgat
     3541 gaccgtgatc ccccgcatct ccagtccggc actgactgca caggaaattg cagagatgga
     3601 cccggcagat ctcactgcca tgtcggttga ggttgtcact tttttgttga agaagtcggt
     3661 gcttgccggt ttaccgacag cctgacggtt gacgatctgg tggctgatat cgccaccatc
     3721 tttcactggc cgccatccgt tactgacgtt atgccgctga ccgaagtgct ggaatggcgg
     3781 gataaagcga ttcagagaag cggggccagc catgagtgac aataacctgc gtctgcaggt
     3841 gattcttaat gcggttgaca aactcacccg cccatttcga tccgcgcagg ccagttcaag
     3901 agaactggct gctgctgtca aaaaatcccg cgatgcaata aagcagcttg atcaggccgg
     3961 gagcagtctg gacagcttcc gaaagctgca ggcagaaaat cagaaattag gcgacaggct
     4021 gaactatgcc cgccagcgtg caaatttgct cagtcaggaa ctgggagcga tggggccgcc
     4081 ttcgcaacgt caggttgttg ctctgggccg tcaacggctg gctgttcagc gcctagaaga
     4141 acgccagaaa aagctgcagc agcagacggc gcttgtgcgt gcagaacttt atcgtgctgg
     4201 tatttcagct aatgatggcg ccagtgcgac ggcccgcatt acccgtgaaa cgatgcgtta
     4261 taacaggcag ctttctgagc aggaagcgag gttacgacgt gtcggggagc aacagcgaaa
     4321 aatgcacgcc gcccgggggg cttacgccag gcgtcttgag gtaagggatc gtattgcagg
     4381 tgccggagcc accaccacgg ctgcagggct ggcaatgggc gcaccagtga tggcggcagt
     4441 aaaaagctat accagcatgg aagatgccat gaaaggtgtg gcaaagcagg tcaatggtct
     4501 gcgtgacgat aatggcaacc gcactgcgcg tttttacgaa atgcagggtg ccatcaaggc
     4561 tgccagcgaa cagttgccga tggaaaacgg tgctgtggac ttcgccgcac tggttgaagg
     4621 tggtgcgcgc atgaacgtcg caaaccctga cgacagctgg gaagaccaga aacgtgacct
     4681 gctggccttc gccagcacgg cggcaaaggc ggcaacagcc tttgaactgc cagcggatga
     4741 actgtcagaa agtctgggga aaatcgccca gctctacaaa atccctaccc gcaatattga
     4801 gcagctcggt gatgcgctga actatctgga tgataacgcc atgtcgaaag gggcggacat
     4861 cattgatgtc atgcaacgcc tgggcggtgt ggctgaccgt ctggattatc gtaaagcggc
     4921 ggcgctgggt tccaccttcc tgacactcgg cgctgcgcct gaggttgcag ccagtgcagc
     4981 aaacgcgatg gtgcgtgaat tgtccattgc caccatgcaa agcaagagtt tctttgaagg
     5041 gatgaatctg ctgaaactca atccagaagt gattgaaaag cagatgacga aggatgcgat
     5101 gggaactatc cagcgggtgc tggagaaggt gaatgcgctg ccacaggata agcgcctgtc
     5161 tgccatgacc atgttgtttg gtaaagagtt tggcgatgac gcagcgaaac tggcaaacaa
     5221 cctgccggaa cttcagcgcc agttaaaact gactgcgggc aatgatgcgc tcggttccat
     5281 gcagaaagaa tccgacatca acaaggattc actttctgct cagtggttgc tggtcaaaac
     5341 cggagcacag aacaccttca gcagcctggg ggaaacgctg cgccagccgc tgatggatat
     5401 tctgtacacg gtgaaaagcg tcacgggggc gttgcgtcgc tgggtggaag ctaacccgga
     5461 actgacgggc actctgatga aagtagccgc tgtggtagct gccgttaccg tgggcctcgg
     5521 caccttagcg gtggcgctgg ctgcagtgct ggggccgctg gcagtcatcc gtctgggatt
     5581 ctctgtgctg ggtatcaaaa cgttaccttc cgttacggca acagtaaccc gaaccagcaa
     5641 cgcgttgtcc tggctggctg gcgcaccact ggcactgctg cgacgcgggc ttgcttcatc
     5701 gggcaacgct gcaggtttac ttactgcgcc gttgtcgtct ttgcgccgca cggcatcact
     5761 gacgggaaat gtcctgaaaa ctgtagcagg tgcgccggtt gcacttttgc ggtctggatt
     5821 atccggttta cgtgcggttg ctgtgatgtt tatgaatcca ctggcggtac tacgcggcgg
     5881 actggctgcc acaggcacgg tgctgcgtat gctcgcatcc ggtccactgg cgatgctgcg
     5941 cgttgccctg tatgccgtct ctggtctgtt aggtgctctg ctcagtctga taggtcttgt
     6001 ggttactgca ctggcgggtg tggcgctggt tgtctggaaa tactggcagc ccatcaccgc
     6061 atttctcggt ggcgtggtgg aaggattcaa agcggcggca ggtcctgtca gtgccgcgtt
     6121 cgaaccgctt aagcctgtgt tccagtggat tggcgacaaa gtacaggcgc tgtggggctg
     6181 gtttactgat ctgctgacgc ccgttaagtc gacctctgcc gaactgcaga gtgcagcggc
     6241 aatggggcga cgattcgggg aggctctggc ggaagggctg aatatggtca tgcatccgct
     6301 ggactccctg aaatccggcg tttcctggtt gctggagaaa cttggcattg tcagtaaaga
     6361 ggccgcaaag gcgaaactgc cggaaagcgt gacgcgtcag caacctgcga cggtgaatgc
     6421 agacggtaaa gtgatgatgc catcgggtgg ttttccgtca tggggatatg gctttgcggg
     6481 gatgtatgac agcggcgggt atatcccgcg cgggcagttt ggcatcgtcg gtgaaaacgg
     6541 gccggaaatt gttaacggcc cggcaaatgt gaccagccgg agaaatacag ctgcactggc
     6601 tgccgttgtt gccggaatga tgggtgttgc tgctacgcca gcagagcttc caccgttgca
     6661 ccctttggca cttcccgcga aaggcggtga agcgatggtg agtcgtgcag ccactgtgcc
     6721 gcccgttcaa cggattgagg caccgatgca gatcatcatt caaacgcagc caggacaaag
     6781 tgcgcaggat attgcgcggg aggtggcccg ccagcttgat gaacgtgaac gcaggctgaa
     6841 ggcaaaagcc aggagtaact acagcgatca ggggggatac gacgcatgat gatggtgctg
     6901 ggattgtacg tgtttatgct gcgcaccgtg ccgtatcagg agctgcagta tcaacgcagc
     6961 tggcgacatg cggcaaacag ccgggtaaac cgacgcccgt caacgcagtt tctgggaccg
     7021 gacaacgaca tgctgacgct ttctggtgtt cttatgccgg aggtaacggg cggcaggctg
     7081 tcgttgctgg ctctggagca gatggcagaa cagggaaaag catggcccct gattgaaggc
     7141 agcggcacga tttacggcat gtatgtgatt gagggactga atcagactaa aacggagttt
     7201 ttccgcgacg gtatgccgcg ccggattgag ttcaccctgt cgctaaaacg cgtggatgaa
     7261 tccctgtccg atatgttcgg tgatctcagt gcgcaactga ataatctgca gggaacggca
     7321 acatctgcct taagcgatat cagtaaaacg gtgggagggc tgctgtcgtg aatttcagct
     7381 ctgaactgct taacaaaggc aacaaaactc cggcattcag catcagtatt gaaggcaggg
     7441 atatcaccac tgtgctggac aaccgcctga tggggctgac gctgacggat aaccggggct
     7501 ttgaagcgga ccagcttgat ctggagctgg acgacgccga tggaaaaatc gtgctgccgc
     7561 gccgtggggc tgtcattacg ctggcgctgg gctggaaggg acagccgctt ttcccgaaag
     7621 gggcattcac ggtggacgag attgaacaca ctggcgcacc ggatcgcctg actatccggg
     7681 cgcgaagtgc tgattttcgt gaaacgctga atacccgccg tgaaaagtcg tggcacaaga
     7741 ccaccgttgg ggaagtggtg aaggaaatag ctgcgcggca caaactgaag atggcattgg
     7801 gtgaagactt gtcggataaa ctcgtggagc atatagacca gactaatgag agtgacggca
     7861 gttttttgat gcggctggcg cgccagtacg gtgctattgc gtcggtgaaa aatggcaatc
     7921 tgttattcat ccggcagggg cagggtaaaa gcgccagcgg taaaccacta ccggtgatca
     7981 ctatcacacg caaggacggc aacagtcacc gctttaccct ggcagatcgc ggagcttaca
     8041 cgggcgtcat tgccagctgg ttgcataccc gcgaacccgc gaagaaagaa agcaccacgg
     8101 tgaagcgtaa gcgcaggact aagaagcaga agaaagagcc ggaagcgaag cagggcgatt
     8161 acctggtggg tacggatgaa aacgtgctgg tacttaatcg cacttatgcc aaccggagca
     8221 acgccgaacg ggcagcgaaa atgcagtggg aacgcctgca acgcggcgtt gcatcattct
     8281 cgctacaact ggcggaaggg cgggcagatc tctacacaga aatgcctgtg aaggtcagtg
     8341 gctttaaaca gccgctagat gatgcggaat ggaccattac gactctgacg catactgtca
     8401 gcccggataa cggttttacg accagtctgg agcttgaagt gaggattgat gatttcgaaa
     8461 tggaatgatt cttcgcaatg gagaactttt aagtttgcaa agtggaataa tgcggtatca
     8521 ttattgtgaa tttagcaaaa atggggagag ctcgaaaaat gatgatttgc ccactgtgtg
     8581 gaagtgccgc ccatactcgc agcagttttc aggtatcttc attgaccaaa gagcgttaca
     8641 accagtgcca gaacattaac tgcagccata cttttgttac ccatgaaact tttgttcgtt
     8701 cgattgcaac gccaaaagag tcaaatccgg ttcagccgca tccaatgaaa tcaggacagg
     8761 tggcgctctc tctttgacgc tgccgccatt ttgtcgccat cgttaaaaaa cagtgcttct
     8821 aacatcatga ttttaaaagg cataaatttc agacaacaaa aaacccatca accttgaacc
     8881 gaaatggcgg ggttgatggg ctccacaaaa tggggacatc aaagaaaagc agtggcacta
     8941 attaagactg atgccctgcg gaaaagttct gcggttgtgc aaaaaaattt cattttcagg
     9001 gcaacttcag ttttatccta atcctggcca taccatgacg atgattgtcc ctgccagcgt
     9061 cagcaggacg ttggcgattg cgtaggtgcc cgcatagccc agcgcaggga tgttactgtg
     9121 agctgtatca ctgatgatct ccattgccgg cgcgcaggtg cgtgcgccca tcattgcgcc
     9181 gaacaacagt gcgcggttca ttcgcaatac ataagcaccg aacaagaaac agataaccac
     9241 gggcacaaga ctgacaatta atccggcaat caacatctga ccgccaatcg cgcccaggcc
     9301 gttattaata ccgctaccgg cgctcagacc aacgcctgcc ataaacacca tcaagccgaa
     9361 ctctttcacc atgcttaatg caccttgcgg aatgtaaccg aaggtcgggt ggttagcacg
     9421 cataaagccc agcataattc cggcgaataa caacccggca gcgttcccca tgccgaaact
     9481 gaatgtgctg aactggaagg tgatcatccc gatcatcagc ccaataacaa agaaggcgca
     9541 aaatgccagc aggtcagtga cctggctgtg aatcgagata aagccgatgc gatcggcgat
     9601 ggtttttacg cgacgggcat caccgctgac ttgtaaaacg tcacctttgt taagcacgac
     9661 gttgtcatct atcggcatct caatctggct acgaatgacg cggttaagga agcaaccgtg
     9721 atcggtcaac ttcagttgtg cgagacgttt acctacagcg ttatggtttt taacgaccac
     9781 ttcttcagtg acgatacgca tgtcgagaag gtcacgatcg aaaacttctt taccgttacg
     9841 gaagctggga tcgagtcggg catgggcgtc gggatagcct accaacgcta tttcatcgcc
     9901 catttgtagc acggcatcac cgtctggatt tgccagaatc ccgttacgtc gaatacgttc
     9961 aatgtagcag ccggtttgtc gataaatacc cagttcacgc agatttttgc cgtcggtcca
    10021 ggccaccagc tccgggccga cgcgataggc gcggatcacc ggtaaataaa ccttacggtt
    10081 ggcatcagtg tccaggccac gttcgcgggc gatttgctgg gcgctggtct gtaagtcctg
    10141 atgctgcaat ttcggcaagt aacgcgcacc aacaatcaaa ctcaccagac cgattaaata
    10201 ggttaaggca tacccgaggc tcagattatc cagtgccagt gagagctgcc tgctttccat
    10261 gccggaatga cgcagtgtat cgccagcacc gaccagaacc ggtgtcgacg tcatagagcc
    10321 tgctaacata ccggccgtca ggccaatatc ccagccaaac agcttaccta accctaaggc
    10381 gatcaccagc gcactgccaa ccatcaccag tgctaacatt aggtaatttt tcccatcgcg
    10441 aaaaaaaatg gaaaaaaagt tcggtccggc ttcgaccccg acgcagaaaa taaacagcat
    10501 aaagccaaga ttaagcgcat cggtgttaat gctgaaatgt tgttggccta ataacagcga
    10561 tacgactaaa acgccaatgg aattacccag ttggatcgaa ccaagtcgta actttccgag
    10621 acatagccca agcgcgagga ccacaaataa taacagaatg taattcccat ttaacaattc
    10681 ggcgacgttt atattcacgg aggctaactt cttgtttact agtaagctgt tgaaagaaat
    10741 ggtaatttac gataatgttt tttaccagaa ttcagggcgc agattcattc agcgcaccta
    10801 aacgatagta aagtaacaat atattttact agtgtaatca cattaggtat caacggctat
    10861 atgaattgcg ttggcctata ttagcatgga atgcgaagcg gctttatctt actgaacgcc
    10921 acactggcga aaaatgtgtt cgatagacgc agtgtcagga ggaacgagtg aaacataaac
    10981 aacgttgggc gggggcaatc tgctgttttg tcctcttcat tgtggtgtgc ctttttctgg
    11041 cgacgcacat gaaaggcgct tttcgggctg ccgggcatcc tgaaatcggc ttgctgtttt
    11101 tcattcttcc tggagcagtt gccagtttct tttcacagcg tagagaagtc ctgaaacctc
    11161 tatttggcgc aatgctggcg gcaccctgtt caatgctcat tatgcggctg tttttttcac
    11221 cgacgcgctc attctggcaa gagctggcat ggttactaag cgcggtgttc tggtgtgcgc
    11281 tgggggcact gtgtttctta tttatcagta gtttgtttaa accacagcac agaaaaaatc
    11341 agtaaagccc tcaacgcgag ggcttgtcag acgatcaggc gtccagattt tctttcaccc
    11401 atgcagcaaa atcggtatag ccgccgatat gttgctgatc gacaaaaatc tgcggcacgg
    11461 tttctacggg tttacctgcc ttttgttgta gatcttcttt agtgatccct tccgcacgaa
    11521 tatctacata ctgatactga aaatcatcgc gttcattgct caatttctca gccagatctt
    11581 ttgcacgcac acagtaaggg caacccgaac gaccaaaaat aacggtttgc attatttctc
    11641 tcctcataga tttatgcctg taatgatcac gctaaaatgt attcgctgaa agtaggttta
    11701 acctgttgca ttaattgcta aaagctataa ctgttaaaca caatacagtg aaaagtttta
    11761 gactgaaggc tcactttgca gagggaagcg tatgcgcgcg atcggtaaat tgcctaaagg
    11821 cgtgttgata ctggaattta tcggaatgat gctactggcg gtggcgctgc tgtcggtaag
    11881 cgactccctg tcgctgcctg agccattttc tcggccagaa gtgcagattc tgatgatttt
    11941 tctcggtgtt ttgctcatgc ttcccgctgc ggtggtggtt attcttcagg tggcaaaacg
    12001 tcttgcccca cagctgatga accgtccacc gcaatattca cgttcagaaa gagaaaaaga
    12061 taatgacgcc aaccattgaa cttatttgtg gccatcgctc cattcgccat ttcactgatg
    12121 aacccatttc cgaagcgcag tgtgaggcga ttattaacag cgcccgtgcg acgtccagtt
    12181 ccagtttttt gcagtgtagt agcattattc gcattaccga caaagcatta cgtgaagaac
    12241 tggtgacgct gaccggcggg caaaaacacg tagcgcaagc ggcggagttc tgggtgttct
    12301 gtgccgactt taaccgccat ttacagatct gtccggatgc tcagctcggc ctggcggaac
    12361 aactgttgct cggtgtcgtt gatacggcaa tgatggcgca gaatgcatta accgcagcgg
    12421 aatcgctggg attgggcggg gtatatatcg gcggcctgcg caataatatt gaagcggtga
    12481 cgaaactgct gaaattaccg cagcatgttc tgccgctgtt tgggctgtgc cttggctggc
    12541 ctgcggataa tccggatctc aagccgcgtt taccggcctc cattttggtg catgaaaaca
    12601 gctatcaacc gctggataaa gacgcactgg cgcagtatga cgagcaactg gcggacccgt
    12661 ggcagcaata atcgccggga tacctggagc gatcatatcc gccgaacaat cattaaagaa
    12721 agccgcccat ttattctgga ttatttgcac aaacagggtt gggcgacgcg ctaaaaccgc
    12781 cacgtcgatg tatgatacgc gggcttttga ccaggtctga cagagaggtg cagggtgaaa
    12841 attgccatat tgtcccggga tggaacgctc tattcgtgta agcggctgcg tgaagccgct
    12901 atacagcgcg gtcacctggt tgaaattctt gatccgcttt cttgctacat gaacataaat
    12961 cctgcggcgt cttctattca ctacaaaggc cgcaagttac cccattttga cgcagtgatc
    13021 ccgcgtattg gcaccgccat taccttttat gggacggcgg cactgcgcca gttcgagatg
    13081 ctggggagct atccgctcaa tgagtcggtc gccattgccc gggcgcgtga caaattgcgt
    13141 tccatgcaac tgctggcgcg tcagggcatc gacctgcctg tcacgggcat tgtgcattcg
    13201 ccggatgata ccagcgattt aatcgacatg gtcggtggtg cgccgctggt ggtcaagttg
    13261 gttgaaggca cgcagggaat tggcgtcgtg ctggcggaga cgcgtcaggc ggcggaaagc
    13321 gtgattgacg ctttccgcgg tctgaacgcg catattctgg tgcaggaata tatcaaagag
    13381 gcgcaagggt gcgatatccg ctgtctggtt gttggcgatg aagtggtcgc tgcgattgaa
    13441 cggcgggcga aagagggcga ttttcgttcc aatttgcatc gtggcggcgc ggcaagcgtc
    13501 gccagtatca caccacagga gcgtgaaatc gcgataaaag ccgcgcgaac gatggcgctg
    13561 gacgttgctg gtgtggatat tctgcgtgct aatcgcgggc cgttggtgat ggaagtgaat
    13621 gcgtcgccgg ggctggaagg aatagaaaaa accactggta tcgacatcgc gggtaaaatg
    13681 atccgctgga tcgaacgcta cgctacgaca gaatattgcc tgaaaacggg tggttagtcg
    13741 caatcacatt actgatcatg gttttgcctg cgctttttgc gtaagctgtg ccggtctttt
    13801 tatcgaaaga ggttgtacaa aattatgaca tcgctggtcg ttcctggtct ggatacgctg
    13861 cgtcaatggc tcgatgacct ggggatgagt ttttttgaat gtgataactg tcaggctctg
    13921 catctgcccc atatgcagaa tttcgacggt gtctttgatg ccaaaatcga tctgatcgat
    13981 aacacgatcc tgttttctgc catggcggaa gtccgacctt cagccgtatt gccgctggcg
    14041 gcggatttat ctgccatcaa tgccagttcg ctgaccgtga aagcatttct tgatatgcag
    14101 gatgataatc tgccaaagct ggtggtttgc cagtctttat ccgttatgca gggcgtaacc
    14161 tacgagcagt ttgcatggtt cgtgcgtcag agcgaagagc agatttcgat ggtcattctt
    14221 gaagctaatg cccatcaact gctgttaccg actgacgatg aagggcaaaa caacgttacc
    14281 gaaaactatt tcctccactg ataactcctt tcgagcacgc agtcgctggt gcagtgactg
    14341 cgcactgcaa aattatctgc tgtttttaac cttttcttaa agattatttc acttctcttg
    14401 tgccgatttg gctttatcac atagagcaaa tacgcataac aatttgttaa ataccgtttt
    14461 ttaatccgag ctatagtctc aaaccctggc taaagttatt cttgcgatgc ttttatatag
    14521 cgagcagtgc tggccgggag agagttatct tttcttacac cgcgccgata aaaaatatgc
    14581 acgtttattg catatctttt agtatgacaa cttttgttcg tttgttaacg aactttcaga
    14641 aggaaagaga tatgaccgcc ttaaataaaa aatggctttc gggtctggtt gcgggtgctc
    14701 tgatggccgt ctctgtcggc acgctcgcgg ctgaacaaaa aacactccac atttataact
    14761 ggtctgatta tatcgcccct gacacggtgg ccaattttga aaaagaaacc ggtattaaag
    14821 tcgtctacga tgttttcgac tctaacgaag tactggaagg caaattaatg gcgggtagca
    14881 ccggctttga cttggtggtt ccatctgcca gctttcttga acgccagttg actgcgggag
    14941 ttttccagcc gctggacaaa agcaaattgc cggagtggaa gaatctcgac ccggagctgc
    15001 tgaagctggt cgccaaacac gatcccgaca ataaatttgc tatgccctat atgtgggcga
    15061 cgaccgggat tggctataac gttgataaag ttaaagctgt gctgggcgaa aacgcgcccg
    15121 tcgatagctg ggacttgatc ctcaaacctg aaaatctgga aaaactgaaa agctgcggtg
    15181 tctctttcct ggatgcgcca gaagaagttt ttgctaccgt gttgaattat ctcggcaaag
    15241 atcccaacag cactaaagcg gatgattaca ccggaccggc aaccgatctg ctgttaaagc
    15301 tgcgcccgaa cattcgttat ttccattcat ctcaatacat taacgacctg gcaaacggcg
    15361 atatttgcgt cgctatcggc tgggcaggtg atgtctggca ggcgtcaaac cgcgcgaagg
    15421 aagcgaagaa tggagtgaat gtctcgttct cgattccaaa agaaggggcg atggcgttct
    15481 ttgatgtatt cgccatgcct gcggatgcca aaaacaaaga cgaagcctat cagttcctga
    15541 attacctgct gcgcccggat gtagtagcgc atatttccga ccatgtgttc tatgccaacg
    15601 ccaataaagc agccacgccg ctggtgagtg cggaagtccg tgagaacccg ggtatttatc
    15661 ctccggcgga cgttcgtgcg aagctattca ctctgaaagt acaggatccg aaaatcgacc
    15721 gtgtgcgcac ccgcgcgtgg accaaagtga agagcggaaa ataatccgca gccttagatg
    15781 ccgggcgggc gcaccacacc cgccggcaat tcgcaccatc atggtgcgct tgcacacatt
    15841 caatgccgga gagcagccgt gaatgacgct atccctcgcc cgcaggcgaa aacccgtaag
    15901 gcgctgacgc cgctattaga aatccgcaac ctcaccaaat cctacgatgg tcagcatgcg
    15961 gtcgatgatg tcagcctgac catctacaaa ggtgaaatct tcgcgctgct gggcgcttcc
    16021 ggctgtggca agtccacgca gctgcgtatg ctggcaggtt ttgaacaacc ttctgccggg
    16081 cagataatgc tcgatggcgt cgatttgtca caggtgccgc cttacctgcg ccccatcaat
    16141 atgatgtttc agtcttacgc gctgtttccg catatgaccg tggaacagaa catcgctttt
    16201 ggcctgaaac aggacaaact accgaaagcg gaaattgcca gtcgggtcca tgagatgctc
    16261 ggcctggtgc acatgcagga gttcgccaaa cgcaaaccgc atcagctttc cggtggtcag
    16321 cgacagcgtg tggcgctggc ccgaagcctt gccaagcgcc cgaaactatt actgctcgac
    16381 gagccgatgg gcgcgctgga taaaaagctg cgtgaccgga tgcagcttga agtggtggat
    16441 attctggagc gtgtcggcgt gacctgtgtg atggtcactc acgatcagga agaggcgatg
    16501 acgatggcgg gacgtatcgc cattatgaat cgcgggaaat ttgtccagat tggcgagcca
    16561 gaagagatct acgaacatcc aaccacccgc tacagtgctg aatttatcgg ttcggttaat
    16621 gtctttgaag gtgtactcaa agagcgtcat gaggatgggc ttgtgcttta ttcgcctggg
    16681 ctggtgcatc cactgaaagt cgacgcggat gcctcggtgg tcgataacgt gccggtacat
    16741 gtggcgctgc gcccggaaaa aatcatgctt tgcgaagagc cgcccgccaa tggttgtaac
    16801 ttcgcggtgg gggaggtgat acacattgcc tatctcggcg atctttcggt gtatcacgtt
    16861 cgtctgaaaa gtgggcagat gattagcgcc cagctacaaa acgcccatcg tcatcgtaaa
    16921 gggttaccga cctggggcga cgaagtgcgt ttgtgctggg aagtggacag ctgtgtggtg
    16981 ctgacggttt aaggagcaaa gatgaataca cttgaacctg ctgcccagtc gaaaccgccg
    17041 ggcggattta agctgtggtt gtcgcagctg caaatgaagc atgggcgcaa actggtcatt
    17101 gcgttgccat atatctggtt gatcttgctg tttctgctgc catttctgat tgtctttaaa
    17161 ataagcctgg cggagatggc gcgcgctatt ccaccttata ccgaactgat ggagtgggct
    17221 gacgggcaac tgtccatcac tcttaatctc ggtaattttc tgcaactgac cgacgatccg
    17281 ctctatttcg atgcttatct ccagtcgcta caggtggctg cgatttcgac attttgctgt
    17341 ttactgatcg gctatccgct ggcgtgggcg gtggcgcaca gtaagccttc gacccgtaat
    17401 attttattac tactggtgat cctgccgtcg tggacctcgt ttctgatccg cgtttatgcc
    17461 tggatgggaa tattaaaaaa caacggtgtg ctgaataatt ttctgctgtg gctgggggtt
    17521 atcgatcaac cgctgaccat tcttcatacc aatctggcag tttatattgg cattgtttac
    17581 gcctacgtgc cgtttatggt gctgccgatt tataccgcgt tgattcgtat tgattattcg
    17641 ctagtggaag cagcgctgga tctcggtgca cgaccgctga aaacgttctt tactgtgatc
    17701 gtgccgctga ctaaaggtgg gattattgcc ggatcgatgc tggtgtttat cccggctgtg
    17761 ggcgagtttg tgatcccgga actgctcggt ggcccggaca gcatcatgat cgggcgcgtg
    17821 ctatggcaag agtttttcaa taaccgcgac tggccggtgg ccgcggcggt agcgatcatc
    17881 atgttgctgc tgctaattgt gccgataatg tggttccaca aacaccagca aaaaagcgtg
    17941 ggagaacacg gatgaataat ttaccggtag ttcgttcgcc ctggcggatt gtgattttgc
    18001 tgctgggctt tacctttctc tacgcgccaa tgctgatgct ggttatctat tcgtttaaca
    18061 gctcgaagct ggtgacggtg tgggccggct ggtcaacgcg ctggtatggt gagttattgc
    18121 gcgatgacgc gatgatgagt gcggttggtt taagcctgac aattgctgcc tgtgcggcaa
    18181 cggcggcggc gatcctcagg actattgcgg cggtggtgct ggtgcgcttt ggcaggtttc
    18241 gcggatcaaa tggctttgcc tttatgatca cagcgccgct ggtaatgcca gatgtcatca
    18301 cgggcttgtc gctgttgtta ttattcgtcg cgcttgctca tgccattggc tggcctgcgg
    18361 accgcggtat gcttaccatc tggctggcgc atgtcacttt ctgtacggct tatgtggcgg
    18421 tcgttatttc gtcgcgtctg cgggaactgg atcgctcgat agaagaagca gcgatggatc
    18481 tcggtgcgac gccgctgaaa gtgtttttcg tcattacgct accgatgatc atgcctgcga
    18541 tcatttctgg ctggttactg gcttttactt tgtcgcttga tgatctggtg atcgccagct
    18601 ttgtttccgg gccgggagcc accacgttac cgatgctggt cttttccagc gtgcggatgg
    18661 gggtgaatcc ggaaatcaac gcccttgcaa cgttaattct cggtgcggtc ggaattgtcg
    18721 gatttatcgc ctggtatctg atggctcgcg cagaaaaaca gcggatacgc gatatccagc
    18781 gtgcaagaca tggctgaaga cactaaaatt tgccaacctg gctacataat gccgcgcatg
    18841 ccgcggcatt gttttcatgg aagacgaaac gttgggattt tttaagaaaa catcttcatc
    18901 tcatgctcgc ctgaatgtgc ctgcgctggt gcaggtagcg gcgctcgcca ttattatgat
    18961 ccgtggcctc gacgtgctga tgattttcaa tacgctgggc gtgcgcggta ttggcgagtt
    19021 cattcatcgc agcgtacaaa cctggagctt aacgctggta tttttaagca gtctggtgct
    19081 ggtttttatc gagatctggt gtgcgttttc actggtgaaa gggcgtcgct gggcgcgctg
    19141 gctatatctg ctgacacaaa tcaccgccgc aagttacttg tgggcggctt cgctggggta
    19201 tggttatccg gagctgttca gcattcccgg tgaatcaaaa cgtgaaatct tccatagcct
    19261 gatgctgcag aagctgccgg atatgctcat cctgatgctg ctgttcgttc cctcgaccag
    19321 tcggcggttc ttccagttgc aataatgtgt ataatcgtcg cccctgatga tgtgaaggtc
    19381 aatgtatgca gtgcgcactt tacgacgcgg gtcgctgtcg ttcctgtcag tggataacgc
    19441 agccgattcc agagcaactc tccgctaaaa ccgccgatct taaaaatctg ctcgccgatt
    19501 ttccggttga ggaatggtgc gcgccggtgt caggcccgga acaagggttt cgtaataaag
    19561 ccaaaatggt ggtgagtggt agcgttgaaa aaccactgct cggtatgctg catcgcgatg
    19621 gcacgccgga agacctttgt gactgcccgc tttatcctgc ctcttttgcg cccgtttttg
    19681 cggcgctaaa accgtttatc gcccgtgcgg ggttaacgcc ctacaacgtg gcgcgtaagc
    19741 gtggcgaact gaaatacatt ctgctgactg aaagccagag cgatggcggc atgatgctgc
    19801 gctttgtact gcgttctgaa accaaactgg cacaactgcg taaggcgctg ccgtggttac
    19861 aggaacaact accgcaactg aaagttatta ccgtcaatat tcagccggta catatggcga
    19921 ttatggaagg ggagacggag atctacctga ctgaacaaca ggcgctggca gagcgtttta
    19981 atgacgtacc gctgtggatc cgtccgcaaa gtttcttcca gactaatccg gcggtcgcca
    20041 gccagctgta cgctaccgcg cgcgactggg tacggcagct gccagttaaa catatgtggg
    20101 atctgttctg cggtgtgggg ggctttggtt tacactgcgc gacgcctgac atgcagttaa
    20161 ccgggatcga aattgcgcca gaggccattg cctgtgcaaa gcagtcagcc gctgaactgg
    20221 gcttaactcg tttacaattt caggcgctgg actccactca gtttgccact gctcaggggg
    20281 aggtgccgga gctggtgctg gttaacccgc cgcgccgcgg cattggtaaa ccgctgtgtg
    20341 attatctctc aacgatggca ccgcgtttta tcatctactc cagctgtaac gcccaaacta
    20401 tggcgaaaga tatccgcgaa ctgcctgggt ttcgcatcga acgggtacag ctttttgata
    20461 tgttcccgca caccgcgcac tatgaagtgc tgacgctgct ggtgaagcaa taaaaaagcc
    20521 gcaggtgcgg cttcagattg ctgatcaggt gcgctttgtt catgccggat gcggcgtgta
    20581 cgccttatcc ggcctacaaa atcatgctaa atcaatacat tgcagagttg atgtgggcca
    20641 gataagcgca gcgcatcagg caatcttact tttgtcatca gtctcaatta ctgcgggaac
    20701 cactggtcat tgattttctg atatgtaccg tcagctttaa ttgctgccag cgcgttattc
    20761 agtttttcca gcagagcttt gttatccgga cgtacagcga tgcccagacc ggtgccgaag
    20821 tattgcggat cggtcacttt ttcagtagca acgcccagtt gcggattggt tttcagccat
    20881 tcgtttacca ccgctgtgtc accaaatacc ccatcaatac gaccattttt cagatcgata
    20941 aaggcattct gataactgtc ataggagaca gttttcactt cggggtgctg atcctgaata
    21001 tatttctggt gcgtggtgcc gttttccatc ccaatacgtt tgcctttcag atcggcaaac
    21061 gttttgtagg tatctttttt ggcaatcacg acggctgagt tttcatagta gggcgtggta
    21121 aacgatacct gcttgctacg ctcgggcgtg atatccatac cggagattac ggcgtcatat
    21181 tttctgaatt tcagtgacgg gatcaggctg tcgaacgcgt gattagtaaa agtacattct
    21241 gcctgcattt gtttgcacaa ggcttttgcc agatcgatat caaagccgac aatctcatta
    21301 ttagcaccta tagattcaaa gggtggatag gtggctgaaa cgccaaaatt gattttctct
    21361 gcggcagaag caccgaaagt aaaggaagca agtaaagcgg caagaactaa ctttttcatg
    21421 atggaactcc cgtctgtcaa tcttatgatt tttggccgtg tctgcggcat gggataacaa
    21481 tgccatcaag tgaatttata tgcaataaat atgattaaat aatttaaatg aaataaaaaa
    21541 cgacggataa cttagtgagt tgtccgtctt cattataaga atttatgcac tatgtaggcc
    21601 ggataaggcg tccacgccgc atccggcaca ggcaccgtgc tgatgtctga tgcgacgctg
    21661 gcgcgtctta tcagacctac aaaccccccg gcgaatgtac gcagctacat taattccgcc
    21721 gttcgaatgc cagtgctttg cgctcgatca gacgcatcat cagcgtcagc aggccgttga
    21781 cgaccaggta aataatccct gccgcaccga acaccattac atcgtaggtg cgtccgtaca
    21841 acaactggct gtatcccatc acttccatca gcgtaatggt gtaagccaga gaggtacttt
    21901 tgaacaccag caccacttcg ttggaataag aagagagcga gcgtttaaag gcatacggca
    21961 gcaggatcgc cagcgtatct tttttgctca ttcccagggc gctacaggac tgccactgac
    22021 cttctgggat cgcacgaatt gcaccgtaaa acagctgcgt ggtatacgcc gcactgttca
    22081 gcgataacgc aatcagcgca cataaccacg gttctgacaa caaatgccac agtgccggat
    22141 actcctgcaa agtcggaaac tggcccggcc cgtaataaat caggaagatc tgcaccagca
    22201 gcggcgtacc ggtaaacagc gtgatataac cccgcaccag ccacaccagc accggcgttt
    22261 tcagcgtcag gatgatggta aaaatcaatg ccagaatcag tgccacaatc agcgaggcaa
    22321 cggttagcgt caggctggtg tgtagccctt tcatcagttc gggtaaatac tcaaacatta
    22381 gctgggcctc cgctcaaaac gtgtcgcgcg caggtcaatg cgtttgagaa tgtactgact
    22441 gagcagggtg atcaccaggt aaatcgccgc cgccacaata taccaggtaa atggttcctg
    22501 ggtacgagta gcgatgcttt ttgtttgcag cattaaatca ttcacactaa tcaaactgac
    22561 cagcgcggta tctttcagca gcaccagcca ctggttaccg aggccaggca gcgcatgacg
    22621 ccacatctgc ggcatcacca gacggaaaaa gatagccgat ttcgacagcc ccagcgcctg
    22681 accagactcc cactgaccca ccggcaccgc tttcaacgcg ccccgaagcg tttgcgaggc
    22741 ataggcggca tacagcagtg acagagcgat gacaccacaa aggaacgggc taacgtcgaa
    22801 gttctcaatg tccatctgca ctgggatctg cacgaaccca agattgatag tgaagccatc
    22861 cgaaagcgtc agcagcagct gcgaggagcc aaaatagata aacagcacca ccagaatttc
    22921 tggcaggcca cgcagaatgg ttaccagcgc tgaacctgcc cacgcgacag gacgccattt
    22981 ttccgactcc cataccgcaa agaacatcgc cagcgccagc ccgacaatca atgcacaaac
    23041 ggcaaggccg acggtcatcc cggcggcgct tgctaaagga aaaaattcat tcatcaggaa
    23101 ttacttctgg aaccatttgt tgtagatggt ttcgtaagtg ccatctttct tcactttttc
    23161 cagcgcagtg ttgagtttct gctgcagctc agtgttgccc tgacgtaccg cgatgccgag
    23221 gccagtgccg aagtaatctt tatcggtcac tttgtcgccc accgccgcca gtttcgggtt
    23281 atctttcagc cactcagtga ccactgcggt gtcaccgaag acgccgtcga tacgcccgtt
    23341 ttgcagatcc agttttgcgt tctggtagct gtcatacgga acggtagtga tttccgggtg
    23401 cttatccata atgaatttct ggtgtgtcgt cccgttctgt acgccgactt ttttgccttt
    23461 cagctgatca acactggtgt atttgccttg ctgacccaca aacagggcag agttgtcata
    23521 gtacggggtg gtaaacagca cctgcttttc acgctccgga gtgatatcca tgcccgccat
    23581 cacggcttct acgcgacgga atttcaggct tgggatcagg ctgtcaaacg cctggttaga
    23641 gaaagtgcag gttgcatcaa tctctttaca cagcgcttgt gccaggtcga cgtcaaaacc
    23701 aacgatctgg ttgtttgcat caatcgattc aaacggagga taggatgctt cggtagcaaa
    23761 acgaatggtt tcggcagctg tggcggaaag actaaaacct gcaattaacg cggcaatcag
    23821 aacttttttc attgttgtta tcccgaatct tagtgagaga gatagttttt aaatgcttcg
    23881 gtttgcggct cggtaaagca gctcgcgtcg ccttgttcta cgatatgacc attttccata
    23941 tacaccactc ggctggcggt tttacgcgcc acttcaactt cgtgggtgac gatcacctgg
    24001 gtaatattcg tttctgccag ctcacgaatg atgctgacga tttgtgccgt aatttccggg
    24061 tccagtgcgg cggtcggttc atcgaacagc agtacctgcg gttccatcat caacgcacgg
    24121 gcaatagcaa cacgctgctg ctgaccacca gaaagatgca gcgggtaacg atcgctataa
    24181 ggtttgagac gcagacgttc cagcagtttt tctgcacggg ccagcgcctg atctttactc
    24241 aaccccagta cacggcaggg cgcttcaatc aggttttgct gcacggtcag atgcggccac
    24301 aggttgtatt gctgaaacac catgccaacg ttacgacgca aatcgcgaat cgctttgtca
    24361 gagggggttt tggtgaaatc gaaatggttg cctgcaatgt tgagcgtacc ggagcgcggc
    24421 atctcaagca gattgagtac acgcagcagc gagcttttac ccgcgccgct ggggccaagt
    24481 aacaccagcg tttcgccctg tgggcaatcc agcgtgatat cgaacagcgc ctgatgcgcg
    24541 ccgtagaagc aattaatgcc gtttaattga atactcattg acactcgtat actggcagtc
    24601 tgatagctat tgaggtcgaa gatagtacct ttgacagaat aattatgcaa tatttctgct
    24661 ttaaaagtta aaagcaaagc gcattattca ataaacatag cacaaaataa cgggggcggt
    24721 ggtcggcgag cataaatgtc ggcattcctc acgaaatgcc ggacaattta cggggtttat
    24781 tggttgatca aggcgttagc gattctcgat ggactgacgg agcgtacccg ccgtggcatg
    24841 aacgctgccg cctaagtagc gtacatcgtc gatcacccaa cactggcctt cctgaatcat
    24901 taacacttca tcctgccagc tctgatcacc ctgttttaga tccacacgca gaggaatatt
    24961 tcgcgcatca cgattcggga ttgttgaggc actggcaaca cgggcgctct ctggcaaggt
    25021 tgtgcgactg gagaatggat cgttggtcag tagttcccga tggttattat cccgggaggc
    25081 atcgctaagc agtgtcgcca gtttgtcgct cagataaggg cgcaaggcgg tgatgtcgtt
    25141 gctgcggtgc aaaatgcggt agtcataaaa ttgctgggcc acgttacccg ggcctccttc
    25201 aacgcaagga ccactgcgtg tgccgttatc tttataagct ggagtgactg tggtgcaggc
    25261 actgaggagc agtgcgcagg ggataagcat tgtcaatttg ctgtagcgca taatgatttc
    25321 cttataagcg atcgctctga aagcgttcta cgataataat gatatccttt caataatagc
    25381 gtatcagtct gataatgctt ttgagatcga aggcttagca aacaaggaga tcgatcatgc
    25441 aattttctac aaccccaact ctggaaggcc agaccatcgt tgaatattgc ggtgtggtga
    25501 ccggcgaagc gattttaggt gccaatattt tccgtgattt ctttgccggt atccgcgata
    25561 tcgttggcgg acgttccggt gcgtatgaaa aagaactgcg taaagcacgg gagatcgcct
    25621 ttgaggaatt aggctcccag gcgcgggcgc tgggggccga tgccgtcgtc ggtattgata
    25681 tcgactacga aacggtcggg caaaacggca gtatgctgat ggttagcgtc agcggtacgg
    25741 cggtgaaaac gcgtcgatga gaagagtctt ctggctggtc gctgccgctc tgttattggc
    25801 agggtgtgca ggcgaaaaag gcattgtcga gaaagaggga tatcagcttg atacccgacg
    25861 ccaggcgcag gcggcgtatc cgcgcattaa agtgctggtg atccactaca ccgcagatga
    25921 ttttgatagc tcgctggcga cactgaccga taagcaggtc agctcgcatt atctggtccc
    25981 tgcggtacca ccgcgataca acggtaaacc gcgcatctgg caactggtgc cggaacaaga
    26041 actggcctgg catgcgggga ttagcgcctg gcgcggggca acgcgcctta acgacacctc
    26101 tattggcatt gagctggaaa accgtggctg gcaaaaatcg gccggagtga aatattttgc
    26161 cccgtttgaa ccggcacaga ttcaggcgct tattccactg gcgaaagata ttattgcccg
    26221 ttatcacatc aagccggaaa acgtagtggc acatgcggat atcgcaccgc agcgcaaaga
    26281 cgatccgggg ccattatttc cctggcagca actggcgcag caggggattg gtgcctggcc
    26341 ggatgcgcag cgggttaact tttaccttgc cgggcgcgcg ccgcacacac cggtagatac
    26401 cgcgtcattg ctggagcttt tggcgcgcta cggttatgac gttaaacctg atatgacacc
    26461 gcgcgagcag cggcgcgtga ttatggcatt ccagatgcat ttccgcccga cgttatataa
    26521 cggcgaagcg gatgcagaaa ctcaggcgat tgccgaagca ttgctggaga aatacgggca
    26581 ggattagcgc ggcagttttc cgtggtcgcg tagccaggcg gcagttttct cgataccttc
    26641 atccagggtg atgaccggct gataacctaa ctcttcctgc gcacgcgtaa tatccagcgt
    26701 aaagtcaaaa ttcaacttgg agacgccgta gtgggtcagc ggcggctctt ttgctgactt
    26761 gcggaaacgc tccatgctgc gggcgatcat atccagcatc gggtagggga cggaacgaat
    26821 acgacagtca atattcaact cgtcgatcag cttctgcacg atgctgcaca gtgtgcgatg
    26881 ctcgccgttg gtgatgttgt acacacgccc ggaaggtagc ttatcgcagg cttcctggct
    26941 tgccagccac attgcgtgca cggcattttc atagtaggtc atatcgacca gcgcactgcc
    27001 gccatgcggt aacagaatac tgccgtagtg gtgcatcata tgcgccagac ggggaataaa
    27061 gactttatcg tgcggtccga acagactttg tgggcgcaga atagtaaagc gcgtttgtgg
    27121 attcgcctgc gaaaacatat tgatcacttc ttcgctggct gctttgctgc gggcaaactc
    27181 gttggcgaag cggtgagggc gaaaatcttc tttaatatcg cgatggtggt gataatcgaa
    27241 gtacagggag ggggaagaga tatgaataaa gttacgcaca ccccaggcga cagcccattc
    27301 acccaggcgg cgagtggcgc gaacgttagc cagatcgaaa gcctgttgtg tcccccaggg
    27361 tgaggtaaag ctggagcagt gccacagcgt atcaatgccc gcgagcatca ctttagcttg
    27421 tgatgaaacc agctcggtca gatccgccgg aacaaactct gcgcccattt tttccagcaa
    27481 tttgcccatt gcctcgttgc gaccggtcgc tcgcacgctg atgcctttct ggcataaaaa
    27541 ctctaccgcg tttcgaccta agccgctggt ggcgccggta accagtacct tcatatcaat
    27601 ccactgttgt tgagaaaata acgtgcgcat tcttccgtga tttcccccat gatgcaatgg
    27661 gaaacatgaa agaataacgc aggttttgtc gattaatctg tgctttgttc tgccagtctg
    27721 gcgatttgtt ttgccattcc gcgaaaaata aacagatgcg cggggatcat caataaccag
    27781 taaaacagcc ccggcatacc gtgcggatgc cagaaagcgc ggacatcgat agtacgatag
    27841 tcgcctttat cttccaggct aaaacacagt cgtcccagcc ccggcgcttt catgccaaat
    27901 aacaacgtaa gttgtttttc cggttcaacg acaatcactt tccagctatc taccgcatcg
    27961 ccagtctgta aatattcgcg ctccgggcgg cctttcgcca gcttatgacc gatcgcgcgg
    28021 tccatcaacg cccgtgtctg ccacaaaata ttgccaaaga aataacgctc tttaccgccg
    28081 atttggttca ctacctgcca taaagcagca aggctggcgg acgttttaac ggtaaacccc
    28141 gcctgtttgg caaaataacc gtactccggt cgccagcggg caaaggcctg agcgtcgtag
    28201 ccccagtcgc tggagttgac cagtttttcc tcctctttca acgtgctacg tactgcgtca
    28261 tcgaaagcga tcagccgttg tgggatgagt gcacgtagcg cggtatcatc cgccagcaga
    28321 tcgtgtttca gcccctgaat caacgccctg gcggtggtgg gcggtacgga agtaatcaca
    28381 ttgagaaacc acaccgaaat ccagcgggtg gggaggggga tggggatcaa ccagcggcgc
    28441 ttgccgctca ccgccataaa atgttcaaac tgttgctgat aactgagcac ctctggtccg
    28501 gcggcttcga agatgcggtg ttcgctggcc ggatgatcta acaacgccac cagatagtgc
    28561 agcaagtttt ccagcgcgat gggcgtggtg cgtgaacgta cccagcgtgg cggcgttaac
    28621 actggcaggt tgtagaccat atcgcgcatg acttcgaacg ccgctgaacc tgcgccaacg
    28681 ataattccgg ctcgaagttc ggtcacaggt acattcgctt cacgaagaat gtccgccgta
    28741 gcctgacgag cacgcagatg atccgactgc tcatgtggcg gggcctgcaa cgaactgaga
    28801 aagattaatt gcttaactgg tacttcacgt agcgcatcgc ggacgttgag agccacctgg
    28861 cgctcctgag cgataaaatc gccgccttcg cccatgctgt gcaccagaaa atagacggta
    28921 tcgatatcct gcaacagggc cggaaggtta tccggccagc tgagatcgac tttatggcaa
    28981 ctgacgtttg ccagttgcag ctttgcaagc ctgtcgacat gacgtgccgc cgccaggatc
    29041 tgatgccctt gctggctgag tgtgcgcacc agatgctgac caatgtagcc actggcaccg
    29101 agaactaaaa tgcgttgcgg cacgtctctc tccttaacgc gccaggaatg cgcgccagtg
    29161 ggcggcgact tccgccagtt gttcgcgcga gacgtcaaga tgcgtcacca ggcggacaat
    29221 cggcgaggcg ttaatcagca cgtttctcac tttcatgtat tcgcctaacg cggcagcatt
    29281 ttcttccccg acgcgaacaa acagcatatt agtgtcctga cgcatcacat ccgcgcctgc
    29341 ttcacgcagt tgctccgcca tccaggcggc gttgtcgtga tcttcctgca accgtgcgac
    29401 gttatttttc agggcataca tcccggcggc agccagaatc ccggactgac gcatcccgcc
    29461 accggccatt ttccgccagc ggatggcacg tttaatgtaa tcacgattac cgacgagtaa
    29521 tgaaccgaca ggcgtcccaa gacctttcga caggcaaatg gtgaacgaat cacaatattg
    29581 cgtgatctct ttcagttcgc agccgtaagc caccacggca ttaaagatgc gcgcaccgtc
    29641 aacatgcagc gccagattgc gctcgcgggt aaattcccat gcttctttca ggtattcacg
    29701 cggcagcact ttgccgttgt gggtgttttc cagactgagt aatttggtgc gggcgaaatg
    29761 gatatcgtcg ggtttgattt tcatcgccac tttatccagc ggtagcgtgc cgtcggctgc
    29821 cgcgtcgatg ggttgcggct gaatactgcc cagcaccgct gcgccaccgg cttcaaacag
    29881 atagttatgc gcggcctgac cgacaatata ctcttcgcca cgttcgcagt gactgagcag
    29941 agcgaccagg ttggcctgag tgccggtagg cagaaaaatg gcggcttctt taccggaaag
    30001 ctctgctgca tagtcctgca gagcattaac ggtagggtcg tctccgtaaa cgtcgtcccc
    30061 aaccggggcg gccatcatcg cttcgagcat ggcgcggctc ggtcgggtaa cggtatcact
    30121 gcgtaaatca atcatggcat gtccttatta tgacgggaaa tgccaccctt tttaccttag
    30181 ccagttcgtt ttcgccagtt cgatcacttc atcgccgcgt ccgctgatga ttgcgcgcaa
    30241 catatacaag ctaaatcctt tggcctgttc gagtttgatc tgcggtggaa tggctaactc
    30301 ttctttggcg accaccacat ccaccagcac cggaccgtcg atggagaagg cgcgttgcag
    30361 ggcttcatca acttcagacg ctttttctac acggataccc gtaatgccgc acgcttcggc
    30421 aatgcgggca aagtttgtgt cgtgtagttc ggtgccgtca gtcaaatagc caccagcttt
    30481 catctccatc gccacaaagc ccagcacgct gttgttaaag acgacaattt tcactggcag
    30541 tttcatctgc actactgaga ggaaatcgcc catcaacatg ctaaaaccgc catcgccgca
    30601 catggcgacc acctgacgtt ctggctctgt cgcctgcgca cccagcgcct gcggcatggc
    30661 gttagccatc gaaccgtggt taaacgaacc taacaggcga cgcttgccgt tcatttttag
    30721 ataacgtgcc gcccacaccg ttggcgtacc aacgtcacag gtgaaaatag cgtcatcggc
    30781 ggcaaaatga ctaatttgct gcgccagata ttgcgggtga atggctttct cgctcggttt
    30841 agctaaatcg tccagccctt tgcgggcgtc gcggtaatct tccagcgctt tatccagaaa
    30901 cttgcgatcg gctttttctt ccaccaatgg aagcaatgca cgcagagtcg acttgatatc
    30961 gccgaccagt gccatatcca ccttgctgtg agcgccgatg ctggctgggt tgatatcaat
    31021 ctgaatgatt ttggcatcgg tcgggtagaa ggcgcggtag ggaaattgcg tgccgagtag
    31081 cactaacgtg tcggcgttca tcatggtatg gaaacctgac gagaagccga ttaacccggt
    31141 cattccaaca tcatacggat tatcgtattc gacatgttct ttaccgcgca gggcatgaac
    31201 aataggcgct ttaattttcc cggcaaactc aactaactct ttatgcgccc ccgcgcagcc
    31261 gctgccacac atcagggcga tattgctgga ataacgcagc agttgcgcca gtttgcgtaa
    31321 ctcttcttct tccggcgtca cgactggttg tggcgcatga taccagtgcg tggttgcccc
    31381 ttctggcgca ggttttaacg ccacgtcgcc tggtaacacg acaaccgaaa cgccacggtt
    31441 aagcaccgct ttgcgcatgg caatcgccag tacttgtggg atctgctccg ggctggaaac
    31501 cagctcgcaa tagtgactac attcgcggaa tagctcttgt gggtgggttt cctggaaata
    31561 gccgctgcca atttcgctgg agggaatatg agcggcaatc gccagtaccg gaacgtgatt
    31621 gcggtggcaa tcaaacaggc cgttgattaa gtgcaggttg ccggggccgc acgatccggc
    31681 gcagaccgcc agttctccgc taagttgtgc ttcagcgcca gcggcaaagg ccgccacttc
    31741 ttcgtggcgg gtggacatcc actcgatggt gcccatgcga ttaagactgt cactaagacc
    31801 attcagagag tcgcctgtga ctccccagat gcgtttcacc cctgccgatt cgagtgtttt
    31861 ggcgatataa gctgcaaccg tttgtttcat ggttctccat ctcctgaatg tgataacggt
    31921 aacaagttta gttcatctga cggaggggga agggatggga gagaaaggag gcactaacgg
    31981 ttaaatagcc cgatgaaagg aatatcatcg ggcataaggc gattatgcga gaaccaaatc
    32041 cccctgcgga tggcaggagc aggccagtac gtaaccttca gcgatttcgg cgtcggtcag
    32101 cgtcattgta ctgctcaccg tatattcacc ggaaaccact tttgtcttac agcagccgca
    32161 aacacccgca cggcaggcag cgacaaccgg aacgttattg ctttccagcg cctccagtag
    32221 cgtggtgcca accggggcgt aaaattctcg tgccggttgc agtttggtga atttcagacc
    32281 gctggtcgcc gcttttgcta ctggggtgaa gaatttctct ttaaagaaac gcgtcacgcc
    32341 gagcgctttc acttcctgct ctacccaatc catatacgga gccgggccgc aggtcatcac
    32401 ggtacgtgaa gctaagtcag gtacacctgc cagcagttct cgagtgagac gaccagcgat
    32461 aaagccttcg gtaacgttat tttctgccac cagcgttacc ggatagttac gccactcatc
    32521 ggcgaaaata acatcctgcg gcgtatgcac gttgtagatc acccgcacat cggcctgtgg
    32581 acggttcttc gcaagccagc gacgcatcga cataatcggc gtgacgccgc agcctgccgc
    32641 cagcaacagg aatttatctt ctgctttatc gtcgcaggta aattccccca tcgcgtccga
    32701 aagccagaga taatcaccgc gttttacatc gcgcgtcagc cactgggagc cgacaccgtc
    32761 atcaatccgc cgcacggtca gggtgatata ttcactcacg cctggcgtgg aggaaatggt
    32821 gtaagcacgc agcgtttccg ctgagtttcg cacgctgacc agtgcatatt gcccggcgcg
    32881 atatgggtag taatcgtggc aaatcaggga aatcgtccac acatccggcg tttcttgcgt
    32941 aatgtgatga acctgcatcc gccacgggca ttgattcgtt ggcatcgtca tcgacaaact
    33001 ccttacgcgc tcaacagttg cttcatgtct tcttcaacag tggtgataga acgcaggccg
    33061 aatttctcgt tcagcaccgc cagcaggtct ggtgtcagga aaccaggtgc agtcgggccg
    33121 gtgacgatat ttttcacgcc cagagaaagc agcgtcagca gaatgacgat cgctttctgt
    33181 tcaaaccagg agagcaccag cgacagcggc agatcgttca caccacagcc cagtttctct
    33241 gccagagtga cagccagaat aatcgctgag taagcatcgt tacattgacc tgcatctacc
    33301 agacgcggca gaccttcgat atcgccaaac tcaagtttgt taaagcgata tttaccacag
    33361 gcgagggtca ggatcaggca gtcatccggc acgatggtgg cgaaatcggt gaagtagtgg
    33421 cgctcgccgc gtgcgccgtc acagccacca agcaggaaga tatgacgcag tttttcacgg
    33481 ctcaccagat caatcagcgt atcagcagcg ccaagcagcg tctggcgacc aaaacccacg
    33541 gtgataaggt gcggaatttc gctgtacggg aagcctgcca tctgttgcgc ctgggtgata
    33601 accgcagaga aatcatcacc gtccagatga cgcacgccag gccagccaac aatgctgcgg
    33661 gtccagatac gatcgtcata agcgcttacg gttgggtcga tgatgcagtt cgaggtcatc
    33721 acgatggggc cagggaaacg agcgaactcc acttgctgat tctgccagcc gctgccgtag
    33781 ttaccgacca gatgcttgaa tttacgcagc tccgggtagc catgcgcagg cagcatttcg
    33841 ccgtgggtgt agacattaac gcccgtgcct tcggtctgtt ccagcaggtt gtagagatct
    33901 ttgagatcgt gaccggaaat cagaatgcat ttacccgccg tcgctttgac gttgacctgg
    33961 gttggcgtcg ggtgaccgta tttaccggtt tcgcctgcat ccagaatgct catcactttg
    34021 aagttcatct ggccgatttc cattgaacac tcaagaagcg cgttcatatc ggcaggccag
    34081 gtccccagcc acgccatgat tttatggtac tgggcataaa tatcgttgtc gtattgaccg
    34141 agaacatgcg cgtgttccat ataggccgcc gcacctttca ggccatacag gcacagcaga
    34201 cgcaggccga gaatgttttc gccaatcgcc gctttatctt tgttaggggt aaattctgct
    34261 gcctgacgtt gcagctcgcc gagatcatcg ctcaccagtt gcaggtcagc catcgggtta
    34321 tcgacgcgcg cgttggcatc tacagccagg cattgtgctt tcagcgcctc gcgcaaggca
    34381 atcgcttcac gagcgtagcc gacaatacgc ggagaatcga agttaacgtt ggtcagggtt
    34441 gagaaaaagg cacgtggcgc gaagctgtca acatcgtggt tgatgatgcc gtattcacgc
    34501 gcttttaccg cccaggcaga aagcccttgc agcgccgcga tgagtaaatc ctgaaggtca
    34561 gaagtttccg ccgttttacc acacatcccc tgcgcgtatg agcagccgtt tcctgccgga
    34621 gtacggatag tttgttcaca ttgcacacaa aacatgatca caccttttaa agttatattt
    34681 aatatacatg tttaaggtta agacgcttaa cgcggggata aaagggattt ttcatgcaac
    34741 tttaagggag attgatttag cgcaattttg gcggcaggga tctaccgcca gagaggtatt
    34801 acgcagagaa aaaggcgatg aggatcggca ctaacaggct aagaataaaa ccgtgaacaa
    34861 ttgccgccgg gaccatatcc agcccgccag tacgttgaag aacgggcagg gtgaaatcca
    34921 ttgatgtggc accgcataag cccagtgcag tagagcggct gcggcgaatc agcccaggga
    34981 tcaacataat agcaatcagt tcacgggcca gatcattaaa aaacgccgcg ctcccgatta
    35041 ccggaccaaa agattcggtc aataaaatac cggaaagaga ataccagccg aaaccggagg
    35101 ccattgccag cgcggtattg atggggagat caagaataaa ggcgttaatt aaaccaccaa
    35161 ttaatgaact gacaaccacc accacggcga caatcattcc ccggcgatta aggacaatct
    35221 gctttaaggt catgccatta ttgcgcaact gaataccaac gaggaaaagt agcaaaatta
    35281 acgtgtattc actggcttcg gtcgcgtgtt gtaagaaagc cagtccactc agaccaatgg
    35341 caaaaccaat cactactacg ccgcacagtt ttagcgactc cagcgccatc gcaatacgcg
    35401 acgggagttt ttcttgctga tggtggttgc gccacggcag gcctcgctcc agccacatca
    35461 gggcggcaat attacacagt aaaataacgg taatactgac ggcagaataa tgcagaatcg
    35521 ccaacaggtt actggcgagg ttatcgagaa acgccagact gatacccata aaaaagagaa
    35581 taaggtaaac catccagctt aatagctgat taataacttt taacgcagct tgttggcgaa
    35641 gcggaatgag gtaacccaca atcaggggaa ccagaatgat taacagccca gaaaacatga
    35701 aaacccagtc cttgcaaaga tgaagtcgaa atgcgcgatg acacactact gaaagcggaa
    35761 ggacgagtaa agttgcaatt aaaaggaaat gttatgcata aggagcagta gagtattcgt
    35821 tttcatttaa agatattctt gcgctttaat tacaaactgc accgatgttg gtggcgtcaa
    35881 aatcgccgag gcgttccctg aaggccgggg cagcccacat ggatgtgggc tgagggcgcg
    35941 ttttacaggg atgttacctc gcgcccgacc cggtagccgt aagggataag tcgagggcac
    36001 cgcgcagcgg cgattttgtt cgccagagcc cgggggggca gggggcggcg gcgattggcc
    36061 gccccctgcg cgctccttgc gccagtggca atatgtggct tagctcatga aaggagcgca
    36121 acaagatgat gaatcaacat ataacaacat cttaaaaaaa gcctgacatt acgctaggcc
    36181 ttctgcgtta attaatcacg cttttccagc agggtccggt aaatcagacc accgataatg
    36241 ccgccgacaa ttggcaccac ccagaagaac cacagttgtt ctaatgccca gccgccctgg
    36301 aagatagcaa ccgcggtgct gcgcgccggg ttaacagaag tgttagtcac cggaatacta
    36361 attaagtgaa tcagggttaa ggccagacca atagcgatcg gcgcaaaacc tgccggcgcg
    36421 aatttggcgg ttgcgccgtg gatcaccaac aggaaacctg cactcaatac cagttcaact
    36481 accagcgcgg aaagcatgga ataaccgcct ggtgaatgct cgccataacc gttagaagca
    36541 aaaccgctgg ctgccgcgtc aaaacccgtt ttaccactgg caattaaata cagcagcgcc
    36601 gctgcaacaa taccgccgac aacctgggca attacgtagc caacgacttc ttttgccgga
    36661 aaacgtccgc cagcccataa accaatagtg accgccgggt taaaatgacc accagaaata
    36721 tgaccaacag caaaggccat cgtcagaacg gtcagaccga acgccaacgc cacgccggca
    36781 aaaccaatgc ctaattccgg gaagcctgcg gccagtacag cactaccaca gccaccaaaa
    36841 acaagccaga aagtaccaaa acattcagct gctaattttc tgaacatatc cacctcaatt
    36901 aaaaattgac cctgtgaaaa atatggtcgt tttatagggt cgtcgtaaaa aaatgacgac
    36961 ggaaataatg cgcggctatt ttaaaaacga aggcgagtca ttcaccagat aaataaatcc
    37021 agtaaatttg atttagggca acagcgggtt gccccatata gtcatttgtc tgattgacag
    37081 tgtagtgcac gcaaaagatt taatccttta ggcgtaataa aaaataatat atcatgctaa
    37141 ttatttgatt ttgttgtttt tgcagactta tcagcaagag ggagtataac gcgattattc
    37201 gctcattttt cagacatttg ccatgcttaa atgtgatgtc atcacgtatt agcaaggcct
    37261 ttcccgttat actgccagcg taaaggataa gtcacatatt tctggagggg atatgattct
    37321 tgagcgcgtt gaaattgtgg gttttcgcgg tatcaaccgt ttgtcgttga tgctggaaca
    37381 aaacaacgtc ctgattgggg agaacgcgtg gggtaaatcc agcttgctgg acgccttaac
    37441 cctgctgcta tcgccagaat cagatctcta ccattttgag cgcgacgatt tctggttccc
    37501 gccgggagat atcaacgggc gagaacatca tctgcatatt attttgacct tccgcgaatc
    37561 gctgccaggc cgacatcggg ttcgccgtta tcggccgctg gaagcgtgct ggacgccatg
    37621 caccgatggc tatcaccgta ttttttatcg tctggaaggg gagagtgcgg aagacggcag
    37681 cgtgatgaca ctgcgcagtt ttctcgataa agacggacat ccgattgatg tcgaggatat
    37741 taacgatcag gcacgccatc tggtgcgttt aatgccggtg ctgcgcttgc gtgatgcccg
    37801 ttttatgcgc cgtattcgta acggcacggt gccaaatgtc cctaatgtgg aagtcaccgc
    37861 gcgccagctc gatttcctcg cccgtgagtt atcctcacat ccgcaaaatc tctctgatgg
    37921 gcagattcgt cagggacttt ccgcaatggt acagctgctt gagcattatt tctctgagca
    37981 gggggccgga caggcgcgat atcgtttaat gcggcggcgg gccagcaatg agcaacgaag
    38041 ctggcgctat ctggacatca tcaaccggat gattgaccga cctggagggc gctcgtatcg
    38101 ggttattttg ctcggcctgt ttgctacttt attgcaggca aaaggcacat tgagactgga
    38161 taaagacgcg cgtccattgt tgctgatcga agatccagaa acccgtttac accccattat
    38221 gctttcagtt gcctggcatc tgttgaatct tctgccattg cagcgcattg ccaccaccaa
    38281 ctcgggtgag ttgctttcgt taacgccggt agagcatgtt tgccgactgg tacgtgagtc
    38341 ctcgcgcgtt gccgcctggc gtctggggcc gagtggcttg agtaccgaag atagccgacg
    38401 catatccttt cacattcgtt ttaaccgtcc gtcatcgctg tttgcacgct gctggttgct
    38461 ggtggaaggg gaaacggaaa cctgggttat caatgaactg gcgcgtcagt gcggacatca
    38521 ttttgatgcc gaagggatca aggtcattga gtttgcccag tccgggctaa agccactggt
    38581 taaatttgcc cgccgaatgg ggattgaatg gcatgtactg gtcgatggcg atgaagcagg
    38641 gaagaaatat gccgctacgg tacgcagcct gttgaataac gatcgggaag ccgaacgaga
    38701 acatttaacg gcgttaccgg cgctggatat ggaacatttt atgtatcgcc agggattttc
    38761 cgatgtgttc caccgcgtgg cgcaaatccc ggaaaatgta ccgatgaatc tacgcaaaat
    38821 tatctcgaaa gcgatccatc gctcttccaa acccgatctt gccattgaag tggcaataga
    38881 ggcaggacgt cgtggtgtgg actccgtacc gacgctgctg aaaaaaatgt tctcacgcgt
    38941 gctgtggctg gcgcgcggtc gcgcggatta accgcgaaac atcgtggcca tttgtggctg
    39001 aatagcgtcg agcatctcat agcgccgacg gtattcagcc cgttttttac tggcgatttc
    39061 ggcaatctct tttcgtgcta tctgtgctgg aaggcggtaa tggcgttcag catcacatac
    39121 gccgccaacc gattcccaga aagcgttgta atcagcgtgg atcttgcctt ctttatcgcg
    39181 ataacgcagg ctgcggtaaa tatgcgtttc attgctgacg gcaataatct gctctacctg
    39241 caaacgttgg gcaaacagac aggccgcttc catcacgagg cgtttgggaa atagcccgtg
    39301 gcaggctttc gtcgcattct ggatttcctg atgtggaatt tcccattttg cgccttgcag
    39361 tccgccaata aacatcgttc ttttcccctg atattcacac agggtaaacg tgatctctgc
    39421 cagaggaata ccttcgctgt tgcgaaacag gattgtgctg tcaccttctt tatccattga
    39481 gatcatcatg gtcagcttaa gcgtgaactg ctcgccgttt ttgccttcca gcttcgccag
    39541 ttgcagcccg ggggtattca aatataagct gaattcttcc gccgacatac atccgcggag
    39601 taacgcataa tggtaacgta acgcctccag caattgctta cggctaagat tcgccgcaag
    39661 gtaagggcga tgcagacgca caggcagtcg cggctggcgc gttaacaaca cattgagatt
    39721 aggccagtgg gaaagttcgt tcatccactc aacgcttaaa cgcggcataa tcaacgagcg
    39781 cagcaaaaat ttctggcgaa aactacggcg atgccagaat ttacccggcc gacactgtcc
    39841 acgtgccaga ctaagaaaaa gtgacaggct gctgagagat tcagatggcg taaaggtccg
    39901 ttcagttagc tgcgacatat tcatgaaatc attggttata catgacgtcg atttcaccat
    39961 tgcgtatctt aaccaaacat caatagtgtg attactaacg taaattttag ggttttgttg
    40021 atatttcgtt gaagttaatg acccggattg gcatatggag tattcagaat atttatgaaa
    40081 aagcggaaaa ccgtgaagaa gcgttacgtt attgcgctgg tgatagtcat cgccggactg
    40141 attacgttat ggagaattct taacgcaccc gtgccgactt atcagacact gattgtgcgc
    40201 cccggtgatt tacagcaaag cgtgctggcg accggaaagc tggacgcgct gcgtaaggtt
    40261 gatgtgggcg cgcaggtcag cggtcagttg aaaactctgt cggtggcgat tggcgataaa
    40321 gtaaaaaaag accagctttt aggggttatt gatcctgaac aggctgaaaa ccagattaag
    40381 gaggtcgaag caacgctgat ggagctacgt gcgcagcggc agcaggcgga agcggagctg
    40441 aaactggcgc gggtgacgta ttcccgtcag caacgtctgg cacaaacgca ggcggtttca
    40501 cagcaggatc tcgacaccgc cgcgacggag atggctgtga aacaggcgca aattggcacc
    40561 attgacgcgg aaatcaagcg caatcaggct tctctcgata cggctaaaac caatctcgat
    40621 tacactcgca tcgttgcccc gatggccggg gaagtcacgc aaatcaccac tctgcaaggc
    40681 cagacggtga ttgccgcaca acaagcaccg aacattctga cgctggcaga tatgagcacc
    40741 atgctggtaa aagcgcaggt ttctgaagcg gatgtaatcc acctgaagcc ggggcaaaaa
    40801 gcttggttta cggtgcttgg cgatccactg acgcgctacg aggggcaaat caaggatgta
    40861 ctaccgacgc cggaaaaggt taacgacgct attttctatt acgcccgttt tgaagtcccc
    40921 aaccccaatg gtttgctgcg gctggatatg actgcgcaag tgcatattca gctcaccgat
    40981 gtgaaaaatg tgctgacgat ccctctgtcg gcgttaggcg atccggttgg cgataatcgt
    41041 tataaagtca aattgttgcg taatggtgaa acacgcgagc gtgaagtgac gattggcgca
    41101 cgtaacgata ccgatgttga gattgtcaaa gggctggaag cgggcgatga agtggtgatt
    41161 ggtgaggcca aaccaggagc tgcacaatga cgcctttgct cgaattaaag gatattcgtc
    41221 gcagctatcc tgccggtgat gagcaggttg aggtgctgaa gggcatcacc ctcgatattt
    41281 atgccggtga gatggtagcg attgttggcg cttcaggttc cggtaaatcg accctgatga
    41341 atattctcgg ctgtctggat aaggccacca gcggcaccta tcgcgtcgcc ggtcaggatg
    41401 ttgccacact ggacgccgat gcgctggcgc aactgcgccg cgagcatttc ggctttattt
    41461 tccagcgtta ccatttactt tcgcatttaa ccgccgagca gaacgttgaa gtacccgccg
    41521 tctatgccgg tcttgagcgg aaacagcggc tgcttcgcgc ccaggagtta ctgcaacgac
    41581 tggggctgga agaccgtaca gagtattatc cggcacagct ttcgggtggt cagcaacagc
    41641 gcgtcagcat cgcgcgggca ttgatgaacg gcggtcaggt aattcttgcc gatgaaccaa
    41701 ccggcgcact ggacagccat tctggcgaag aggtgatggc gatcctgcat cagctgcgcg
    41761 atcgcgggca tatggtgatt atcgtcaccc acgatccgca ggtcgctgct caggccgagc
    41821 gggtgatcga aattcgcgac ggcgaaattg tgcgcaatcc tcccgccatt gaaaaagtga
    41881 atgttgctgg cgggacggag cctgttgtca acacggtgtc tggctggcgg cagtttgtca
    41941 gcggttttaa cgaggcgctg acgatggcat ggcgggcgct ggcagcgaat aaaatgcgta
    42001 ctttactgac catgctgggg attattatcg gtattgcgtc ggtggtttcc attgtcgtgg
    42061 tgggtgacgc cgccaaacaa atggtgctgg cggatattcg ttctattggt acgaatacta
    42121 ttgatgtcta tcccgggaaa gattttggcg atgacgatcc gcaatatcag caggcgctga
    42181 agtacgacga cttaatcgcc atccaaaaac aaccgtgggt cgcctcagcc acacctgccg
    42241 tctcgcaaaa cctgcgcctg cgttataaca atgttgatgt tgctgccagt gccaatggcg
    42301 tgagcggcga ttattttaat gtctatggca tgaccttcag tgaaggaaac acctttaatc
    42361 aggagcagct gaacggtcgt gcgcaggtcg tggttctcga cagtaatact cgccgccagc
    42421 ttttccccca taaagcagat gtggttggcg aggtgattct ggtcggcaat atgcccgcca
    42481 gagtcattgg tgtggcggaa gaaaaacagt cgatgtttgg tagcagtaaa gtgctgcgtg
    42541 tctggctacc ttacagcacg atgtccgggc gagttatggg ccagtcgtgg ctgaactcca
    42601 ttactgtcag ggtaaaagaa ggatttgaca gcgccgaggc ggaacagcaa ctcacgcgtt
    42661 tactttcact gcgccacgga aagaaggatt tctttacctg gaacatggac ggcgtcttga
    42721 aaactgttga aaagaccaca cgtactttac aactgtttct gacgctggtg gcggtgattt
    42781 cgctggtggt gggcggtatt ggtgtaatga atattatgct ggtgtcagtg accgagcgga
    42841 cgcgggaaat tggcattcgc atggctgtag gtgcgcgagc aagcgatgtt ttgcaacagt
    42901 tcctgatcga agccgtactg gtttgcttgg tcggtggcgc gttgggaata acgctgtcac
    42961 tgttaattgc tttcaccttg cagcttttct tacccggctg ggagattggt ttttcaccgt
    43021 tggcactgct gctggcgttt ctctgctcga cggccaccgg gattttattt ggatggttac
    43081 ccgcacgaaa tgcggcacga ctggatccag tagatgctct ggtacgagag taatttttga
    43141 gataaaaatg ccagccgatc gggctggcat tttgccttta ggatgtacac aatgagacag
    43201 aagagctatg cgactgccgc ttctacttcg acgggcacaa taacactggc gtgattgcct
    43261 tttggcccct ggtggacatc aaactgaacg gattgtccag cttttagcgt tctgtaacca
    43321 tccatctgaa tggtggaata atgagcgaaa atatcttcgc cgccgccttc agggcagatg
    43381 aaaccaaacc ctttggcatt gttgaaccac ttaacagtac ccttttccat gcttcgacat
    43441 ccttcgcaaa tcttatacaa gtaagatgga ataaaccggg gtcagagagg gggctgttca
    43501 aaacctcgcc aactctagaa atacaattta gagaattagg gcgagccgtc aagcgtttga
    43561 caggggccag ggggcaggta tgaatcaaaa atttgaagca gttaacgcta ttgacaggaa
    43621 tgtgacagat gtcgctgatg ccaacgatag atgatagtta tctatcatgt ggagtagatt
    43681 ggtcaggcaa ataagctctt gtcagcggca gggcgttctg ccgataaccg taaccgaaga
    43741 tgataactga caatgggtaa aacgaacgac tggctggact ttgatcaact ggcggaagaa
    43801 aaagttcgcg acgcgctaaa accgccatct atgtataaag tgatattagt caatgatgat
    43861 tacactccga tggagtttgt tattgacgtg ttacaaaaat tcttttctta tgatgtagaa
    43921 cgtgcaacgc aattgatgct cgctgttcac taccagggga aggccatttg cggagtcttt
    43981 accgccgagg ttgcagaaac caaagtggcg atggtgaaca agtacgcgag ggagaatgag
    44041 catccattgc tgtgtacgct agaaaaagcc tgaatgcagg cataaaaatt gggggaggtg
    44101 cctatgctca atcaagaact ggaactcagt ttaaatatgg ctttcgccag agcgcgcgag
    44161 caccgtcatg agtttatgac cgtcgagcac ttgttactgg cgctgctcag taacccatct
    44221 gcccgggagg cgctggaagc gtgttctgtg gatttggttg cgctccgtca ggaactggaa
    44281 gcctttattg aacaaaccac acccgttctg cctgccagtg aagaggagcg cgacacacag
    44341 ccgacgctga gttttcagcg tgtactgcaa cgtgcggtct tccatgtcca gtcctccggt
    44401 cgcaatgagg taaccggtgc aaacgttctg gtcgctatct ttagcgaaca ggagtcgcag
    44461 gcggcatatc tgttgcgtaa acatgaagtc agccgtctcg atgtggtgaa ctttatctct
    44521 catggcacgc gtaaagacga gccgacacag tcttctgatc ctggcagcca gccaaacagc
    44581 gaagaacaag ctggtgggga ggaacgtatg gagaatttca cgacgaacct gaatcagctt
    44641 gcgcgcgtgg gcggaatcga cccactgatt ggtcgtgaga aggagctgga gcgtgctatt
    44701 caggttctct gccgtcgccg taaaaacaac ccgctgctgg tgggggaatc tggtgtcggt
    44761 aaaaccgcga ttgcggaagg tcttgcctgg cgaattgttc agggcgatgt gccggaagtg
    44821 atggctgact gtacgattta ctctctcgat atcggttctc tgttagcggg cactaaatat
    44881 cgcggcgact ttgaaaaacg ttttaaagcg ttgctcaagc agctggagca ggacactaac
    44941 agcatcctgt ttattgatga gatccacacc attatcggtg cgggtgcagc gtctggtggc
    45001 caggtcgatg cggctaacct gatcaaaccg ttgctctcca gcggtaaaat tcgcgtaatt
    45061 ggttcgacaa cctatcagga gttcagcaac attttcgaga aagaccgtgc tctggcgcgt
    45121 cgcttccaga aaattgatat tactgaaccg tcgatcgaag aaactgttca aatcatcaat
    45181 ggcctgaaac cgaagtatga agcgcaccac gacgtgcgtt ataccgcaaa agcggtgcgt
    45241 gcagcggtag agctggcggt gaaatacatt aacgatcgtc atctgccgga taaagccatt
    45301 gacgttatcg acgaagcggg cgctcgcgca cgcctgatgc cggtaagcaa acgcaagaaa
    45361 accgttaatg tggcggatat tgagtccgtg gtggcccgta ttgcgcgcat tccagagaag
    45421 agtgtttctc agagtgaccg cgataccctg aaaaacctcg gcgatcgcct gaaaatgctg
    45481 gtcttcggtc aggataaagc cattgaggcg ctgactgaag ccattaagat ggcgcgtgca
    45541 ggtttaggtc acgaacataa accggttggt tcgttcctgt ttgccggccc taccggggtc
    45601 gggaaaacag aggtgacggt acagctttcg aaagcgttgg gcattgagct gctgcgcttt
    45661 gatatgtccg agtatatgga acgccatacc gtcagccgtc tgattggtgc gcctccggga
    45721 tacgttggtt ttgatcaggg aggtttgctg actgatgcgg tcatcaagca tccacatgcg
    45781 gtgctgttgc tggacgaaat cgagaaagcg catccggacg tgttcaatat tctgttgcag
    45841 gtgatggaca acggtacgct gaccgataac aacggacgca aagcggactt ccgtaacgtg
    45901 gtgctggtga tgaccaccaa cgccggggta cgtgaaactg agcgtaaatc cattggtctt
    45961 atccaccagg ataacagcac cgatgcgatg gaagagatca agaagatctt tacaccggaa
    46021 ttccgtaacc gtctcgacaa cattatctgg ttcgatcatc tgtcaactga cgtgatccat
    46081 caggtggtgg ataaattcat cgtcgagttg caggttcagc tggatcagaa aggtgtttct
    46141 ctggaagtga gccaggaagc gcgtaactgg ctggccgaga aaggttacga ccgggcaatg
    46201 ggcgcacgtc cgatggcgcg tgtcatccag gacaacctga aaaaaacgct cgccaacgaa
    46261 ctgctgtttg gttcgctggt ggacggcggt caggtcaccg tcgcgctgga taaagagaaa
    46321 aatgagctga cttacggatt ccagagtgca caaaagcaca aggcggaagc agcgcattaa
    46381 tctgattgtt aggtaggttg gtcaagtccg taatctcgaa agaggttacg gactttttgt
    46441 ttatggggtg gaggaggttc agaccctttt tttaatgatg atggtaagtt gttgataatt
    46501 agtgctgcgg gaaggtaagg ataaaaaagg gtgctgcagg agaatgggat ggttttgctt
    46561 tatttacaac gggctaaacg tgtagtattt gagttcactg ccgtacaggc agcttagaaa
    46621 ttcacaggta acatactcca cccgcccacc atgttcactg ccgtacagac agataaaatg
    46681 cgaaaaaaaa gctcgcactt tcgtacgagc tcttctttaa atatggcggt gaggggggga
    46741 ttcgaacccc cgatacgttg ccgtatacac actttccagg cgtgctcctt cagccactcg
    46801 gacacctcac caaattgttt tgctaccaaa cctcatgggt ggcaacgggg cgctactata
    46861 gggagttgga gtaaaacggt caagaagaat tttaatgata attattgttt gctcatactg
    46921 taaacaagtt gtgcagtata tctacatcga gacaagttac ggacttatac ttccaaagta
    46981 cttcatacat atcacaaaat aaaaaggccg gttaaaccga ccttttactc gttctttctc
    47041 ttcgcccatc aggcggtaaa acaatcagcg actacggaag acaatgcggc ctttgctcag
    47101 gtcgtacggg gtcagttcaa cagtcacttt gtcgcccgtc aggatgcgga tgtagttttt
    47161 gcgcatttta ccggagatgt gtgcagtaac cacgtgaccg ttttctaact ctacgcggaa
    47221 catggtatta ggcaacgttt caagaacggt accttgcatt tcaatattgt cttctttggc
    47281 catctaatcc tctggggtat cactaccgta atttgaaccg gcaagataat gccgaagttc
    47341 tgtaaataag taaagatttg cgcgctaaat cgcaacaaac aggttcggca cattactccg
    47401 aaaacacacg gctaagccgc accaaaagcg caacgtataa gggagcggtg agataaacga
    47461 tgggcgttac ctgacgcgaa aaattcctta tcggcagcgg ggtaatgagc gtaaccaact
    47521 ctgcgaccgc aattataaca ctctggggag aaatgtgccg aaaacattca ttcttgtggt
    47581 gaaaacaagc atcgtggtac ccagaaatta ttcggcaatc gtccgaggcg catttgattg
    47641 agataattaa ggtaatcccg gcggggaatt tcgcaggcac caagcgatgc tgtgtgatcg
    47701 ttaaggacct ggcagtcgat aagcttaccg ccatgaccga taaattcctt acagaatacc
    47761 agaagcgccg ttttagacgc attttccatc cggctgaaca tggactcgcc acaaaatagc
    47821 gttccctggg ccacgccgta cataccgccg acaagctcat cttcacgcca gacttcaatg
    47881 gagtgggcat ggccgagttc gtgaaggcga tggtaggctt cgaccacgcc acgcgtgatc
    47941 caggttcctt cttcgcgatc gctggcacag ccttcaatga cctgaccaaa agcgtaattc
    48001 atcgtgacac gatagggcga gcgtttatga aatcgcttca tactacggct gatatgcagt
    48061 gattctggcc atagcaccgc gcggggatcg ggcgaccacc agaggatggg gtcgcctgga
    48121 gaaaaccacg gaaaaatacc acgctggtaa gccattaaca ggcgcgcagg gctaagatcg
    48181 cccccaagtg ccagcaggcc gttaggctca cgtaatgcgc cttccgggga agggaaggct
    48241 attgaatggc gagaaagctg aaccaggcgc atgaccgcaa aactccacgc aagtcggatc
    48301 gttcaataat agcttacaaa ccctgcttga actggtaata acgcccctgt ctggcaagca
    48361 gctctgcgtg agtaccttgc tcaataattt gcccgttgtc catcactatt atttgttgga
    48421 aacgagagag tccgcgaagt cgatgggtga ccattaacac cgttttctca cgcatcattt
    48481 ctgcaagcaa ttcaaggatc tggctttcgg ttgtggcatc taagccttcg gtaggttcat
    48541 ccagcaacac cagtggcgca tcatgtaaca gcgcacgggt gatagccaga cggcgcagtt
    48601 caccaccgga gagctggcgt ccgccttcac ctaaccaact gttgagacct gcatcctcga
    48661 gcagcttctc cagaccaacg cgacgcaagc tctccgccag agcctcatca ctactgccag
    48721 gcgaggcgag taacagatta tcacgcagcg tggcgctaaa cagatgcact cgctgaggaa
    48781 caacgctgat ggtctgtcgt agagccgctt cattcaggct ggctatgggg ctatcgttaa
    48841 gcaaaatctc gccctgttgc gggtcccaag cgcgggtcag cagttgtaac agtgttgatt
    48901 tgccgcatcc ggttcgcccg agaatcgcaa tatgttcccc ggcgtttacc tgaagagaaa
    48961 tccctttaag tgcctgttgg gattgctccg gataagtgaa ctgaacatcc cgtaatgtca
    49021 gcgaaacgcg atcggcaaca cgagtttggg tatcagggaa ggtgacttcc ggtttttgat
    49081 ccgttaaatc agtgatccga acggcagagg caatgacttg ccccagatgc tgaaatgcac
    49141 ccgttactgg tgccagtgct tcaaacgcgg ctaacgcgca gaagacaaac agggcaatta
    49201 acgcgccggg ttgagcattg ccgccaacgc cgccagacgc catccacagc atcaggatca
    49261 ccgctaacgc gccaatgagc agcattatcg cttgcgacaa tgcggtcagt tcagattgac
    49321 ggcgttgcgc ttccagccat tgaatttctg tattctctag ttgcgtgcga taacgatcgc
    49381 tggcaccaaa aatggtcagc tcagcttgcc cttgcagcca ggccgtcagt tgttggcgat
    49441 actgtccgcg aagatgagtc agattttgcc cggtgctttt tcccgcacga taaaacagcg
    49501 gtggcatcag gaaaagcgtc agtaacataa tgccgcccag cgtaaaggcg agggtgaaat
    49561 caaggaaact taacccgatt gtcaccatca taatcaccac aaaagcgccc accagcggcg
    49621 agataacgcg caggtaaaga tgatcgagcg tatcaacatc cgccaccacg cgattgagca
    49681 attcgccctg acgatagcgc gccagtccgg caggggagag gggcaacaat ttgctgaagg
    49741 tgtaaatgcg cagatgctgc aacacgcgga aagtcgcgtc gtgacttacc agacgttcaa
    49801 aataacgccc ggcagtacgg gtgattgcgg caccacgcac gcccgcagcg ggtagcatat
    49861 agttgaagct gtacagtccg gcaacccccg caaccgctga ggccgagagg aaccagccgg
    49921 aaagtgtcaa cagtccgata ctggcgagca gcgtcacaat tgccagcaca ataccaagac
    49981 ttaacatcca tttatgacgt ttatacagtg ctagataggg tagcaaagcg cgcatttaaa
    50041 tctcctcctg acgatgggcc agtaatgtgg cgaatgggcc accagccaca cttaattccg
    50101 cgtaacgtcc ttgctcaata atccggccat cctgcataac ccaaatgaca tcccagtcag
    50161 caagatcttc taactggtgg gtgaccatta acgttgtctg gcgcagagag gcggcattca
    50221 gcgcctccat tacgcgctgt tcactgtgag catcaaggct ggcagcgggt tcatccaaca
    50281 gtaatagcga acagggattt agtaacgcac gggccaccgc cacgcgctgc gcctgcccca
    50341 cggaaaggcg ggcagcctgg tcgccaacag gcgtatcaac gccttgtggc aggagcggta
    50401 gaaactcgct gacccaggcg ttatccagcg ctgcttgtaa ttcatgttcg ctggcatcag
    50461 gtcgcgccag tagtacgtta tcccgtaatg ttgctgccgg taattgtgga ttttgcccaa
    50521 cccaggagag atgtttacgc catgattctg gtgataaatc gcgtaattct atcccgttga
    50581 ttcgtagcga tccctgatat gagagaaaac cagaaagcgc gttcaacagt gaacttttac
    50641 ctgaaccgct gcgaccaacc aacacggcac gttggcctgc tggcaaagta aagttcagcg
    50701 gtccggccag cgttttacct tccggcgacg tgataaacag atcctcggcc tcaatggtca
    50761 ccggatcggt cgatgctaat tccacctcgc cacactgcgg atgggcgagc ggggtttcca
    50821 taaacgtttt cagactgtca gctgcaccaa cagcctgggc tttagcatga taaaacgtac
    50881 cgagatcgcg taatggctgg aaaaactctg gcgcaaggat cagggccaga aaacccgcag
    50941 ccagcgtcac gccagtatcg tagtgaccaa aatccagctc gccaagatag gaaaaaccaa
    51001 agtagaccgc caccagagca attgacagcg aggtaaaaaa ttcgagaatg ccggaggata
    51061 aaaatgccag ccgtagcact tccattgtcc gttggcggaa atcttccgaa gcagaacgaa
    51121 tactttcaat ttcagcttca ccacgaccaa aaatacgcaa tgtttccatg ccgcgcaggc
    51181 gatcgaggaa atgcccactt aagcgagcaa gagcgagaaa gttacgtcgg ttagcatcgg
    51241 cagcccccat tccaaccagc gccataaaca acggaattaa cggtgcagtg cccagcagaa
    51301 tgagcgccgc agcccagttt gaggggaaga ttgccaccac aatcagcaac ggcaccgaca
    51361 ctgccagcgc catttgcggc aggtagcgtg catagtaatc atgcatatcg tcaatttgct
    51421 cgagtaccag cgtcgcccag ctccccgcag gtttaccctg aatccacgct ggccctgctt
    51481 gttgcagacg gtcgagaacc tgccggcgga tggcaaagcg gatatgctgc ccggcgtgat
    51541 aacccacccg ttcgcgtaac cagaccaccc atgcgcgcag tacaaaggtc agaaccagta
    51601 acgtaaaggg aagcagcagg gcttcacggg gaatattctc cataatcata tgttgcagaa
    51661 ttcgcgccat gaaccaggcc tgggcaatga tcaatatgcc gctcacaaag cccagcagac
    51721 gagaaatatt cagccaacgt tgggagatga cgctttgctg ttttaaccag cgggttaact
    51781 ctttttgacg agatttattc attgcacgct tagcaggtga gttatcagaa ttatttgcag
    51841 agcaatgtta caacggggaa aaaataaagg cgacccatag tcgcaaggtg tcgccttctt
    51901 tacttttgtt actgatttgt aaaattattt tgcgtcagct aaaccatcga ggtagcgttc
    51961 cgcatcaagt gctgccatgc agcctgtacc ggccgaagta atggcctgac gataaatatg
    52021 atccatcacg tcacccgcgg caaagacgcc aggaatgctg gtctgggtgg cattaccatg
    52081 aatacccgac tgtactttga tgtagccgtt ttccagttcc agctgccctt cgaaaatggc
    52141 agtattcggg ctgtgaccga tagcaacaaa cagaccggca acgtcgagtg attcgatgtt
    52201 atcgctgttt tgcgtatcgc gcagacgaac gccagtgaca cccatttgat cgccggtcac
    52261 ttcttccagc gtccggttgg tgtgcagaat gatgttgccg ttctccactt tatccatcag
    52321 acgcttaatg aggatttttt ccgcgcggaa accgtcacgg cggtgaatca gatgtacttc
    52381 cgaagcgatg ttagacagat acaacgcctc ttcaaccgcg gtattgccgc cgccgatgac
    52441 cgcaactttc tggttgcgat agaagaaacc gtcgcaggtt gcacaagcag aaaccccacg
    52501 gcctttaaag gcttcttcag agggcaggcc gagatagcgt gcagaagctc cggtggcaat
    52561 aatcagcgcg tcgcaagtgt attcgccgtt atcgccattc agacggaacg gacggttttg
    52621 cagatccacc ttgttgatat gatcaaaaat gatttcagtt tcaaatttgg tggcatgttc
    52681 gtgcatgcgc tccattaata acggaccggt cagatcgttt ggatcgccag gccagttttc
    52741 cacttctgtg gtggtggtca gttggccgcc tttttccatg ccggtaatca gcacaggttg
    52801 caggttggcg cgcgccgcat agacagcagc ggtgtatccc gccgggcctg aacccaggat
    52861 aagcagttta ctgtgtttgg tcgtgcccat gagatcccca tagttgttgg cagacaatgg
    52921 gcaggattgt agggaattta ctgacgtaaa aaaagagtat gacgattttg ttaacaattt
    52981 gtgcaatcgg cagcatcgat aagcaggtca aattctcccg tcattatcac ctctgctact
    53041 taaatttccc gctttataag ctgattaaat gatgaataaa cgcccctgtt aatgaatatc
    53101 tggcatgttg tactaaaaat cgatgttttg ctttgacaat cccctggtgt tttgcgaaaa
    53161 cattcgagga agaaaaaaaa cagtattctt atatgcgcat aaccatgcat gtaaatacca
    53221 tgtttaccgt gctagtgaaa tctacgtatg gcgtggacag acgccattcg tgatgtcgat
    53281 agctgccaca aggcaacggt cttctcaccg tagacccagg cattgcgcgc cgtgaatctt
    53341 catgatttcg gtctatcgtg acgggtagcg actctgaaca gtgatgtttc agggtcagac
    53401 aggagtaggg aaggaataca gagagacaat aataatggta gatagcaaga agcgccctgg
    53461 caaagatctc gaccgtatcg atcgtaacat tcttaatgag ttgcaaaagg atgggcgtat
    53521 ttctaacgtc gagctttcta aacgtgtggg actttcccca acgccgtgcc ttgagcgtgt
    53581 gcgtcggctg gaaagacaag ggtttattca gggctatacg gcgctgctta acccccatta
    53641 tctggatgca tcacttctgg tattcgttga gattactctg aatcgtggcg caccggatgt
    53701 gtttgaacaa ttcaataccg ctgtacaaaa acttgaagaa attcaggagt gtcatttagt
    53761 atctggtgat ttcgactacc tgttgaaaac acgcgtgccg gatatgtcag cttaccgtaa
    53821 gttgctgggg gaaaccctgc tgcgtctgcc tggcgtcaat gacacacgga catacgttgt
    53881 tatggaagaa gtcaagcaga gtaatcgtct ggttattaag acgcgctaac acggaacagg
    53941 tgcaaaatcg gcgtattttg attacactcc tgttaatcca tacagcaaca gtactggggt
    54001 aacctggtac tgttgtccgt tttagcatcg ggcaggaaaa gcctgtaacc tggagagcct
    54061 ttcttgagcc aggaatacac tgaagacaaa gaagtcacat tgacaaagtt aagtagcggc
    54121 cgtcgccttc tggaagcgtt gctgatcctt attgtcctgt ttgccgtctg gttgatggct
    54181 gccttactaa gctttaaccc ttcggacccc agctggtcgc aaacggcctg gcatgaacct
    54241 atccataatt taggtgggat gcccggtgcg tggctggcag atacgctgtt ctttattttt
    54301 ggcgtgatgg cttacaccat tcccgtcatt attgtcggcg gttgttggtt tgcctggcgt
    54361 catcagtcca gtgacgaata cattgattat tttgccgttt cgttacgcat cattggcgtt
    54421 ttggcgctca tccttacctc ctgtggtctg gcggcaatca acgctgacga tatctggtat
    54481 tttgcctccg gtggcgtcat tggcagctta ctaagcacta cgttacaacc actgctacac
    54541 agtagcgggg gaactattgc gctgctctgc gtttgggctg cgggcctgac gctgttcacc
    54601 ggttggtcat gggtgaccat tgctgaaaaa ctcggcggct ggattttaaa cattctcacc
    54661 ttcgccagta atcgtacccg tcgcgatgat acctgggtcg atgaagatga atatgaagat
    54721 gacgaagagt atgaagatga aaaccacggc aaacagcatg aatcacgccg tgcccgtatt
    54781 cttcgcggcg cgctagcgcg tcgtaaacgg ttggcggaaa aattcattaa tccgatgggg
    54841 cggcaaacag acgctgcgtt gttctccggt aagcggatgg atgatgaaga agagattatc
    54901 tacactgcac gcggtgtggc tgccgacccg gacgacgtcc tattttcggg caatcgtgca
    54961 acgcagccag aatatgacga atacgatcca ttattaaacg gtgcgccaat taccgaacct
    55021 gttgctgtag cagctgctgc taccacggcg acacaaagct gggctgcgcc ggttgaacct
    55081 gtgacccaga cgccgcctgt tacttctgtt gatgttccac cttcgcaacc tacagtagcc
    55141 tggcagcctg taccgggtcc acaaacggga gagccggtta ttgctcctgc accggaaggt
    55201 tacccacagc agccacaata tgcgcagcct gcagtgcaat ataatgagcc gctgcaacaa
    55261 cctgtacagc cacagcagcc gtattatgcg cctgcagctg aacaacctgt gcaacaacct
    55321 tactacgctc ctgcggcgga acaacctgtt cagcaaccgt attacgcaac tgcgccggaa
    55381 cagcctgcgc aacagccgta ttatgcccct gcgccagaac aaccggtggc aggtaacgcc
    55441 tggcaagccg aagagcagca atccactttt gctccacagt ctacatacca gactgagcaa
    55501 acttatcagc agccagccgc tcaggagccg ttgtaccaac agccgcaacc cgttgaacag
    55561 cagcctgttg tggagcctga acccgttgta gaagagacaa aacccgcgcg tccgccgctt
    55621 tactattttg aagaagtgga agagaagcga gcccgtgaac gtgaacaact tgcggcctgg
    55681 tatcaaccga ttccagaacc ggttaaagaa ccagaaccga tcaaatcttc gttgaaagcg
    55741 ccttctgctg cagcagtacc tccagtagaa gccgctgccg ctgtttctcc gctggcatct
    55801 ggcgtgaaaa aagcgacact ggcgacgggg gctgccgcaa ccgttgccgc gccagtcttc
    55861 agtctggcaa atagcggtgg accgcgtccg caagtcaaag agggaattgg cccgcagttg
    55921 ccacgaccga aacgtattcg cgtgccaact cgtcgtgaac tggcgtctta cggtattaag
    55981 ctgccctcac agcgtgcggt ggaagagaaa gcccgtgaag cccggcgcaa tcagtatgat
    56041 tctggcgatc agtataacga tgatgaaatc gatgcgatgc agcaggatga actggcacgt
    56101 cagttcgccc agacacagca gcaacgctat ggcgaacagt atcaacatga tgtgcccgta
    56161 aacgcagaag atgcagatgc tgcggcagag gctgaactgg ctcgtcagtt tgcgcaaact
    56221 caacaacaac gttattccgg cgaacaaccg gctggggcga atccgttctc gctggatgat
    56281 tttgaatttt cgccaatgaa agcgttgctg gatgatggtc cacacgaacc gttgtttacg
    56341 ccaattgttg aacctgtaca gcagccgcaa caactggttg caccgcagca gcagtatcag
    56401 cagccacaac agccggttgc gccacagcag caatatcagc agccgcaaca gccggttgcg
    56461 ccgcagccgc agtatcagca gccacaacag caggttgcgc cgcagccaca atatcagcag
    56521 ccgcaacaac cggttgcacc gcagcagcag gataccctgc ttcatccgct gttgatgcgt
    56581 aatggcgaca gccgtccgtt gcataaaccg acgacgccgc tgccttctct ggatttgctg
    56641 acaccgccgc cgagcgaagt ggagccggta gatacctttg tgcttgaaca aatggctcgc
    56701 ctggtggaag cgcgtctggc tgatttccgt attaaagccg atgtcgtcaa ttactctccg
    56761 gggccggtta tcactcgctt tgaacttaac ctggctcctg gcgtaaaagc ggcgcgcatt
    56821 tctaacttgt cacgggacct tgcccgttca ctttcgacgg tggcggtgcg tgtcgttgaa
    56881 gttattcctg gcaaacccta tgtaggtctg gagttaccaa ataaaaaacg acaaaccgtt
    56941 tatctgcgcg aagttttgga taacgccaaa ttccgcgata atccgtcgcc attaaccgtg
    57001 gtgctgggta aagatatcgc cggtgagccg gtggttgccg atctggcgaa aatgccgcac
    57061 ttgttggttg cggggactac cggttccggt aaatctgtcg gtgtgaacgc gatgatcctg
    57121 agcatgcttt ataaagcaca gccagaagat gtgcgtttca tcatgatcga cccgaaaatg
    57181 ctggagcttt cggtttatga aggcattccg catctgttaa cggaagtcgt tactgatatg
    57241 aaagatgccg ccaacgcgct gcgctggtgt gttaacgaga tggagcgtcg ttataaactg
    57301 atgtctgcgc tgggtgtgcg taatctggcg ggttataacg aaaaaattgc tgaagccgat
    57361 cgcatgatgc gtccgattcc agacccgtac tggaagccgg gtgacagtat ggatgcccag
    57421 catccggtgc tgaaaaaaga accatacatt gtggtgttgg ttgacgaatt tgccgacctg
    57481 atgatgacgg taggtaaaaa agtggaagag ctgatagcac gtctggcgca aaaagcccgt
    57541 gccgcgggta tccacctcgt actggcaact cagcgtccat cggttgatgt tattactggt
    57601 ctgattaaag cgaatattcc gacccgtatc gcctttaccg tatccagtaa gattgactca
    57661 cgtaccattc ttgatcaggc tggcgcggaa tcactgctgg ggatggggga tatgctctac
    57721 tctgggccga actccacgtt gccggtacgt gtccatggtg cttttgttcg cgatcaggaa
    57781 gttcatgccg tggtgcagga ctggaaagcg cgtggtcgcc cacagtatgt tgatggcatc
    57841 acttccgaca gtgaaagcga aggtggcgcg ggcggtttcg atggcgctga agaactggat
    57901 ccgttgttcg atcaggcggt gcagtttgtc actgaaaaac gcaaagcgtc aatttctggc
    57961 gtacagcgtc agttccgcat tggttataac cgtgcagcgc gtattatcga acagatggaa
    58021 gcgcagggga ttgtcagcga acaggggcac aacggtaatc gtgaagtgct ggccccaccg
    58081 ccgtttgact aattaatgca ttgccggata aggcgcggta gcgtcgcatc cggcactcta
    58141 tcaactgaaa attcagtatt ttcttttttc ctcaagctga ttattagcct ggaatagaga
    58201 gtagagggaa ctcccgatcg ggagtgacgt aatttgagga ataatgatga aaaaaattgc
    58261 catcacctgt gcattactct caagcttagt agcaagcagc gtttgggctg atgccgcaag
    58321 cgatctgaaa agccgcctgg ataaagtcag cagcttccac gccagcttca cacaaaaagt
    58381 gactgacggt agcggtgcgg cggtgcagga aggtcagggc gatctgtggg tgaaacgtcc
    58441 aaacttattc aactggcata tgacacaacc tgatgaaagc attctggttt ctgacggtaa
    58501 aacactgtgg ttctataacc cgttcgttga gcaagctacg gcaacttggc tgaaagatgc
    58561 caccggtaat acgccgttta tgctgattgc ccgcaaccag tccagcgact ggcagcagta
    58621 caatatcaaa cagaatggcg atgactttgt cctgacgccg aaagccagca atggcaatct
    58681 gaagcagttc accattaacg tgggacgtga tggcacaatc catcagttta gcgcggtgga
    58741 gcaggacgat cagcgcagca gttatcaact gaaatcccag caaaatgggg ctgtggatgc
    58801 agcgaaattt accttcaccc cgccgcaagg cgtcacggta gatgatcaac gtaagtagag
    58861 gcacctgagt gagcaatctg tcgctcgatt tttcggataa tacttttcaa cctctggccg
    58921 cgcgtatgcg gccagaaaat ttagcacagt atatcggcca gcaacatttg ctggctgcgg
    58981 ggaagccgtt gccgcgcgct atcgaagccg ggcatctgca ttctatgatc ctctgggggc
    59041 caccgggtac cggcaaaaca actctcgctg aagtgattgc ccgctatgcg aacgctgatg
    59101 tggaacgtat ttctgccgtc acctctggcg tgaaagagat tcgcgaggcg atcgagcgcg
    59161 cccggcaaaa ccgcaatgca ggtcgccgca ctattctttt tgttgacgaa gttcaccgtt
    59221 tcaacaaaag ccagcaggat gcatttctgc cacatattga agacggcacc atcactttta
    59281 ttggcgcaac cactgaaaac ccgtcgtttg agcttaattc ggcactgctt tcccgtgccc
    59341 gtgtctatct gttgaaatcc ctgagtacag aggatattga gcaagtacta actcaggcga
    59401 tggaagacaa aacccgtggc tatggtggtc aggatattgt tctgccagat gaaacacgac
    59461 gcgccattgc tgaactggtg aatggcgacg cgcgccgggc gttaaatacg ctggaaatga
    59521 tggcggatat ggccgaagtc gatgatagcg gtaagcgggt cctgaagcct gaattactga
    59581 ccgaaatcgc aggtgaacgt agtgcccgct ttgataacaa aggtgatcgc ttttacgatc
    59641 tcatttccgc actgcataaa tcggtacgtg gtagcgcacc cgatgcggcg ctgtactggt
    59701 atgcgcgaat tattactgcc ggtggcgatc cgttatatgt tgcgcgtcgc tgtctggcga
    59761 ttgcgtctga agatgtgggt aatgctgatc cacgagcgat gcaggtggca attgcagcct
    59821 gggattgctt tactcgcgtt ggcccggcgg aaggtgaacg cgccattgct caggcgattg
    59881 tttacctggc ctgcgcgcca aaaagcaacg ctgtctacac tgcgtttaaa gctgcgctgg
    59941 cggatgctcg cgaacgtccg gattatgacg tgccggttca tttgcgtaat gcgccgacga
    60001 aattaatgaa ggaaatgggc tacgggcagg aatatcgtta cgctcatgat gaagcaaacg
    60061 cttatgctgc cggtgaggtt tacttcccgc gggaaatagc acaaacacgc tattatttcc
    60121 cgacaaacag gggccttgaa ggcaagattg gcgaaaagct cgcctggctg gctgaacagg
    60181 atcaaaatag ccccataaaa cgctaccgtt aatgttatcg ttgcggtaat gttgttactg
    60241 tatccctgtg gtcgcaggct gtggccacat ctcccattta attcgataag cacaggataa
    60301 gcatgctcga tcccaatctg ctgcgtaatg agccagacgc agtcgctgaa aaactggcac
    60361 gccggggctt taagctggat gtagataagc tgggcgctct cgaagagcgt cgtaaagtat
    60421 tgcaggtcaa aacggaaaac ctgcaagcgg agcgtaactc ccgatcgaaa tccattggcc
    60481 aggcgaaagc gcgcggggaa gatatcgagc ctttacgtct ggaagtgaac aaactgggcg
    60541 aagagctgga tgcagcaaaa gccgagctgg atgctttaca ggctgaaatt cgcgatatcg
    60601 cgctgaccat ccctaacctg cctgcagatg aagtgccggt aggtaaagac gaaaatgaca
    60661 acgttgaagt cagccgctgg ggtaccccgc gtgagtttga ctttgaagtt cgtgaccacg
    60721 tgacgctggg tgaaatgcac tctggcctcg actttgcagc tgcagttaag ctgactggtt
    60781 cccgctttgt ggtaatgaaa gggcagattg ctcgcatgca ccgcgcactg tcgcagttta
    60841 tgctggatct gcataccgaa cagcatggct acagtgagaa ctatgttccg tacctggtta
    60901 accaggacac gctgtacggt acgggtcagc tgccgaaatt tgctggcgat ctgttccata
    60961 ctcgtccgct ggaagaagaa gcagacacca gtaactatgc gctgatccca acggcagaag
    61021 ttccgctgac taacctggtg cgcggtgaaa tcatcgatga agatgatctg ccaattaaga
    61081 tgaccgccca caccccatgc ttccgttctg aagccggttc atatggtcgt gacacccgtg
    61141 gtctgatccg tatgcaccag ttcgacaaag ttgaaatggt gcagatcgtg cgcccggaag
    61201 actcaatggc ggcgctggaa gagatgactg gtcatgcaga aaaagtcctg cagctgctgg
    61261 gcctgccgta ccgtaaaatc atcctttgta ccggcgacat gggctttggc gcttgcaaaa
    61321 cctatgacct ggaagtatgg atcccggcac agaacaccta ccgtgagatc tcttcctgct
    61381 ccaacgtttg ggatttccag gcacgtcgta tgcaggcacg ttgccgcagc aagtcggaca
    61441 agaaaacccg tctggttcat accctgaacg gttctggtct ggctgttggt cgtacgctgg
    61501 ttgcagtaat ggaaaactat cagcaggctg atggtcgtat tgaagtacca gaagttctgc
    61561 gtccgtatat gaacggactg gaatatattg gctaataccc aatttttctg aatctaaaaa
    61621 gcgcctgcgg gcgctttttt tgtctccctt tgataccgaa caataattac tcctcactta
    61681 cacgtaatac tactttcgag tgaaaatcta cctatctctt tgattttcaa attattctat
    61741 gtatacaagc ctatatagcg agctgctata gaaataatta cacaatacgg tttgttactg
    61801 gaatcaatcg tgagcaagct tgagtgagcc attatgaaaa cgaaaatccc tgatgcggta
    61861 ttggctgctg aggtgagtcg ccgtggtttg gtaaaaacga cagcgatcgg cggcctggca
    61921 atggccagca gcgcattaac attacctttt agtcggattg cgcacgctgt cgatagcgcc
    61981 attccaacaa aatcagacga aaaggttatc tggagcgcct gtacagttaa ctgtggtagt
    62041 cgctgcccgc tacgtatgca cgtcgtggac ggtgaaatca aatatgtcga aacggacaat
    62101 accggcgatg acaattacga cggcctgcac taggttcgcg cctgcctgcg tgggcgttcc
    62161 atgcgtcgcc gtgtctacaa tccggaccgc ctgaaatatc cgatgaaacg agtcggggcg
    62221 cgcggtgaag gcaaattcga gcgcattagc tgggaagaag cctacgacat catcgcgacc
    62281 aatatgcagc gcctgatcaa agagtacggc aacgagtcta tctatctgaa ctatggcacc
    62341 ggtacgctgg gcggcaccat gacccgctcc tggccgccgg gaaataccct ggtcgcgcgg
    62401 ctgatgaact gctgcggcgg ctatctgaac cattacggcg actactcctc cgcgcaaatt
    62461 gcggaaggtt tgaactatac ctacggcggc tgggcagatg gcaacagccc gtcggatatc
    62521 gaaaacagta agctggtagt gctgtttggt aataaccctg gcgaaacgcg aatgagtggc
    62581 agtggggtga cttactatct tgaacaggca cgccagaaat ctaatgcccg catgatcatc
    62641 atcgatccgc gctataccga caccggtgcc gggcgcgaag atgagtggat ccctattcgt
    62701 ccgggaacag atgccgcact ggttaacggt ctggcgtacg tcatgatcac tgaaaacctg
    62761 gtggatcagg cattcctcga taaatattgc gttggctacg atgagaaaac cctgccagcc
    62821 agtgcgccga aaaatggcca ctataaagct tatattctgg gtgaagggcc agatggcgtg
    62881 gctaaaacac cggaatgggc ctcacaaatc accggtgttc cggcagacaa aatcatcaaa
    62941 ctggctcgtg aaatcggcag taccaaaccg gcgtttatca gccagggatg gggcccgcag
    63001 cgtcacgcta acggtgaaat cgcaacccgt gctatctcga tgctggcgat tctgaccggt
    63061 aacgttggta ttaacggagg caacagcggc gcgcgtgaag gttcatacag cttaccgttt
    63121 gtccgtatgc cgaccttgga aaacccgatc cagaccagca tttcgatgtt tatgtggacc
    63181 gatgccattg aacgtggccc ggaaatgacg gcgctgcgtg atggtgtacg cgggaaagat
    63241 aagctggatg tgccgatcaa aatgatctgg aactatgccg gtaactgcct gattaaccag
    63301 cattctgaaa tcaaccgtac ccatgaaatc cttcaggatg ataagaagtg cgagctgatt
    63361 gtggttatcg actgccacat gacctcatcg gcgaaatatg ctgacatcct gctgcctgac
    63421 tgcaccgctt ccgaacagat ggactttgcg ctgaatgcat cctgcgggaa tatgtcttac
    63481 gtgattttca acgatcaggt gattaaaccg cgctttgaat gtaagaccat ctatgaaatg
    63541 accagcgaac tggcaaaacg tcttggcgtt gagcaacagt ttactgaagg ccgtacacag
    63601 gaagagtgga tgcggcatct gtatgcccag tcgcgggaag cgattcctga actaccaacg
    63661 tttgaagagt tccgcaagca ggggatcttt aaaaagcgcg acccacaagg gcaccacgtt
    63721 gcttataaag ctttccgtga agatcctcag gcaaattcac tgaccacgcc atcgggcaaa
    63781 attgagattt attcgcaggc gctggctgac attgccgcta cctgggaatt gccagaagga
    63841 gatgtgatcg atccactgcc gatctacacg ccgggctttg aaagttatca ggatccgttg
    63901 aacaaacagt atccgctgca gcttacgggt ttccactata aatctcgcgt tcactcaact
    63961 tacggcgacg ttgatgtgct gaaagcagct tgccgtcagg aaatgtggat caacccgctt
    64021 gatgcgcaaa aacgcggtat caacaacggc gataaagtca ggatctttaa cgatcttggt
    64081 gaggttcata ttgaggcgaa agtgacgcca cgaatgatgc cgggtgtggt cgcactgggt
    64141 gaaggtgcct ggtatgaccc ggatacaaaa cgtgtcgata agggcggttg tatcaacgta
    64201 ctgaccactc aacgtccgtc tcctctcgct aaggggaatc cgtcacatac aaaccttgtt
    64261 caggttgaaa aggtgtaagg agtaaccgat gacaacccag tatggatttt ttattgattc
    64321 cagccgttgc accggttgca aaacctgcga gctggcctgt aaagactaca aagatttgac
    64381 gccagaagtc agcttccgcc gcatttatga atatgctggc ggcgactggc aggaagataa
    64441 cggtgtctgg caccagaacg tgtttgccta ctatctgtcg atttcatgta accactgcga
    64501 agatccggct tgtactaaag tctgcccgag cggtgcgatg cataaacgtg aagatggttt
    64561 tgttgtggtc gatgaagatg tgtgcattgg ctgccgctac tgccatatgg cttgc
//
LOCUS       DAJVUP010000006        56570 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.006, whole genome shotgun sequence.
ACCESSION   DAJVUP010000006 DAJVUP010000000
VERSION     DAJVUP010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 56570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 56570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..56570
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.006"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            611..1735
                     /locus_tag="OQQ75_000374"
     CDS             611..1735
                     /locus_tag="OQQ75_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000486721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1974819.1"
                     /translation="MFQKIKIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHP
                     IAERYMDDITTVDIANYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGT
                     CRMNPVELVRKPKISSGRDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEI
                     LSLRWEHVDLQHGVAHLPTTKNGAPRDVPLSRKARNYLQMLPTQLNGNIFSYTSSGFK
                     SAWRTALQELKIENLHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLR
                     AYQLVSKLDARRKQTSKIAPYFVPYPATVENRNGQVVVTLSDFDLETSAATKEQAIFH
                     ASVLLLRTLAQAAQRGERVPTPGELPTNIDERVMICPLTN"
     gene            1747..2400
                     /locus_tag="OQQ75_000375"
     CDS             1747..2400
                     /locus_tag="OQQ75_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974820.1"
                     /translation="MIEQLQSDFLFWIFIYFLIVGLLIRNIHLTRKIKSIEKNKMFPA
                     EEYAVLDIEQHMSNKYIGRLVTRFMKRTNGAPLLIVFPEYDKGDNNEDKNSPPFQLVK
                     LTSNINNIKEIYSNDDSNCFLNNILAQKNLYTTHSGPSQAWIEHAYPLQQVTILLQGT
                     RHSEREDIISQLEIILSRLKNGENTGFEHDDDFGYSFQYDAAAVGKSSFFDEAAGRK"
     gene            2447..2965
                     /locus_tag="OQQ75_000376"
     CDS             2447..2965
                     /locus_tag="OQQ75_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000698399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HCS1974821.1"
                     /translation="MKILLTIFIYLLTAFQSANAGGIPYTFNQKILQGKVIRVLDGDT
                     IEIKTLPAKIVVYEVPIRVRLINIDAPEKKQPFGRWSTSQLKTLVAGKQVTVSYSHKD
                     RYGRIIGHVFTTNGTDASRFMVQSGAAWVYERYNVDESLPALQREAQEQKRGLWADAN
                     PVPPWEWRYKHN"
     gene            2981..3385
                     /locus_tag="OQQ75_000377"
     CDS             2981..3385
                     /locus_tag="OQQ75_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001576899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HCS1974822.1"
                     /translation="MALSPKEKKELQQRFEKQLLPDLDMSFELNGEVYKFNFDKNESG
                     DYIDSFTQAVWGGYQDAEEWEKYGKHQETELPECPEPVEGWCDCDKCKSMIFHKEKNI
                     YVCLSCHKQTEPFLPIDWNSNDYDWLPYEDEY"
     gene            3749..4336
                     /locus_tag="OQQ75_000378"
     CDS             3749..4336
                     /locus_tag="OQQ75_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000280693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974823.1"
                     /translation="MYIHIVPKLYHLMANKCSLKSISIPELDFIIDSESLSVGRPWPN
                     KCLWVGMRKGRKSVNGLVLQTDKKLRWFTTIYTWDIEDMGLIYHQVNTYIEDDDFDMV
                     SQEILLNGSFDKWSYRVHSAYENKPPARIQPKMESLLNKPGENSHDVWEEFEWGDFLL
                     SREESLLLHTIQSERLSTDCSLFKRQPSIESALVI"
     gene            4348..6513
                     /locus_tag="OQQ75_000379"
     CDS             4348..6513
                     /locus_tag="OQQ75_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020314981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HCS1974824.1"
                     /translation="MRLFIAEKPAVANDIVKALGGNFTRHDGWFESDNTIVTNCFGHI
                     IESQPPENYNPEYKEWKIETLPLRLYPVKYQPVESAEKQVKTIIELIRRADVTEIIHA
                     GDPDDEGQLLVDEVLEYAGNTKPVKRVLINDNTLPAVKKALANPKNNRDFRGLYLKAL
                     ARSVADAIYGLSMTRAYTIPAKNKGYKGVLSVGRVQTPVLGLIVNRTRANKNHKSSFY
                     YTMTGHFQRGADVIRANWKPGEFAPLTDRKLLDKTWANGTATSLAGKPATVEAAATDD
                     KKTAAPLPFNLVRLQQYMNKKFKMTAQKTLDITQQLREKYKAITYNRSDCSYLSDEQF
                     SEAPQIIDALKSVFDQPMDIDTTRKSKAFNSAKVTAHTAIIPTVSVPDVNALSTDERN
                     VYLAIAQHYLVQFMPEKAYQEVSVAIQCGDESFYARARKTTDSGFEAFLGVENAGDDE
                     AEVENDDSAFDLLCKIRTGETVTTKEVVVNEKKTTPPPLFTEATLLAALVRVADFVTD
                     PVIKKLLKDKDRDKKDEHGGIGTPATRASILETLKKRNYITLEKGKLIPTDTGYALID
                     ALPDIAVNPDMTALWAEKQTLIENGEMTIEQFVDELYNDLIPMISNANSAEIKVSPSA
                     PSGQSQRLSSPCPSCGKQIVIRPKGYFCTGCEFKIWKDFCGKSLTDKQIETLITKGVT
                     SELKGFISQKTNKEFSAKVKLVDKATGKLGFEFTQKSKK"
     gene            6582..6788
                     /gene="hha"
                     /locus_tag="OQQ75_000380"
     CDS             6582..6788
                     /gene="hha"
                     /locus_tag="OQQ75_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000850858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1974825.1"
                     /translation="MKTKQDWLFQLRRCSTLDTLEKIIEKNQNSLPPSELESFNAAAD
                     HRLAELTMNKLYDKIPPSVWKYVY"
     gene            7069..7308
                     /locus_tag="OQQ75_000381"
     CDS             7069..7308
                     /locus_tag="OQQ75_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001687634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974826.1"
                     /translation="MLTQNESCLDNIACVAPPFGQFSTLIGWFLIAESILTACAGVYF
                     LRKNKKRWSRHDTVMFLFASGLAIFSTWMLEHQWV"
     gene            7360..7800
                     /locus_tag="OQQ75_000382"
     CDS             7360..7800
                     /locus_tag="OQQ75_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000666090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974827.1"
                     /translation="MKEYEKAALIYSLKESNTLVLRIILISILVVGVISCAIYLYNLA
                     ISLFYSNPTSVQFTFCGVGCFIALLLQWISNVDANYRERIGDQPGTIKNIVQYLFAAI
                     ITISFITMALTAILVLKDSSNIWLNITFIVLLLSIFVAIISVWG"
     gene            complement(7843..12102)
                     /locus_tag="OQQ75_000383"
     CDS             complement(7843..12102)
                     /locus_tag="OQQ75_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020315431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase"
                     /protein_id="HCS1974828.1"
                     /translation="MIVRYGGGNDGIVDYLINGRKAERQYTRDELDHRVVLDGDLQTT
                     DKIIDSIENKSQERYLHITLSFHESHVSNEVLKAVVDDYKKLLMNAYHPDEYSFYAEA
                     HLPKIRHIQDNSTGELVERKPHIHIVIPKVNLITEKFLNPVGDVTKGHTIEQLDAIQE
                     FINNKYNLDSPKDYPRKDADYGKIISRVKGDLYKEHHSELKGELLSRIENEKIENYSV
                     FKDIVAEYGELRIRNAGKTNEYLAVKLPGDKKYTNLKSPLFRQNYIETRTLTLEKPTP
                     KEIEKRLNTWLNKTSQEIKHIFNQAEKTRELYKTLSPSQQIDFLQERIKEYDSREKLN
                     ERNSQQTSGREGGYKSCPKKFARIRQSEATVGLSRMPQRGMVYGINGFTRPDSVSVLS
                     DISQRDLAEQLPQREHPGQDVRRDYDRQFTESGIKSLERSSFLCETMFQTLNEAAEKN
                     EITTMAEIRRNIDPVRFLSSAAERFNIIPAQHKIRTAKDGSPRFSVGNRNMNASDFLT
                     KHINLAWKDAKSFLLEVYSQQLENTPYTRYPTYRRLTHHEARERLNSLNLSEKTLRNT
                     IRFERGKLYNDLREMRRELKLIPREQRDIAVGVIVYKKLTTLERLSELDTDGRHIIRQ
                     YHADWHKDKDEMKALERLKSYLNFDEINAISADEPELSLQKAVDSQRRLEEAKKVNTK
                     LKDLVMDKQDSRIVYRDQESEKPVFTDKGNFVVAGKNPSKEEIGIMLEYSREKFGGVL
                     KLTGSEDFKKMCAEVAAEQDMKIILRPEQYQQMMLELKAELQGNKFEQVETQENSQES
                     ESRIEKGDALKEQATEQEQATEQAQATEQAQATEQAQATEQAQTTEQAQTTEQAQTTE
                     QAQATEQAQVAEQATSSYDPGVITRANTLDSQMLSKGTNGEFGYLKSLDSDENEIWEV
                     LGHVPGDSDDIFDVASFDNENDAKEFCKIVNELGIDRTQALIQEQLTTQHDQATAQVH
                     NKQEIYCINFSRFHDLNEGIVFHSKDAAIQCYEESKSSAIEEYESNCLNGDGFDTVVL
                     MSKTVSTDELSSYPEGALVTFDRPFEIIANSYEEYRTPVYAVSFSKDEFSEDIKTFES
                     LHDASEYKNKMLQEHGLNQDDILITPVTREEIAFKGIKDAVNDANMAVMEQAGDSSRE
                     SPEEILASISANEHMISGLENFLVKDRSQFSSCNGDIVVEAEITRGEGGLYHLAVAGK
                     HGLERGDAVARVDVTEQQFAAITGKTPSEVLTGDQTSARVPVITGIHFSTRAIENVNK
                     LEQQKDYVYFSTHEGLNAEIKDFSSLKDAIEWGRVECELHDLNKRDTVIYRVESEHIS
                     QGIDAVMKNAERVERHEIEKAQGRDCTPEDGKILEAIDRFEDKFRGEGLKFEREKAES
                     DLLNHGFTREMAEDALGKQFVQAREDHQESQQQRDDSQDMH"
     gene            complement(12099..12440)
                     /gene="mobC"
                     /locus_tag="OQQ75_000384"
     CDS             complement(12099..12440)
                     /gene="mobC"
                     /locus_tag="OQQ75_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000725934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="HCS1974829.1"
                     /translation="MKKKTNKNVHVTFRLTEEEYAPFDRAIKELNISKSEFFRLLTIG
                     KINTYASDKRNIPEYKRCLSQLSWAGNNINQIAHRLNSDHLKGIISESLYKKVLNGLI
                     GIRDRLQEIAK"
     gene            12770..13249
                     /locus_tag="OQQ75_000385"
     CDS             12770..13249
                     /locus_tag="OQQ75_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001058980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974830.1"
                     /translation="MNNGENKLLGSLLAQKVKRSKTGRIRERFAEIEEAQQQGIRNID
                     IVNALNDEGFDLTLKTFENILHRIRKERAEKKDVSHLLSNKEKTYQKAITIEDKNRKT
                     KQDNDILNAYLPVCFNNAKIAQQAIDNNVSIETIKSWNCANFVQVSNTLGNYIRNKR"
     gene            13255..13956
                     /locus_tag="OQQ75_000386"
     CDS             13255..13956
                     /locus_tag="OQQ75_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000280996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1974831.1"
                     /translation="MYLKLAIVNNSGNVGKSTIGQTLLKPRLEGSEIIKVETLNTDGT
                     NDEKLAAKEFDEIIKRIDDSECTIIDVGSSNIEQFLVQMNEYQGSHDLIDYFIVPVVR
                     EAKQQIDSIQTITTLMAMGVEQDRFKVIFNLAEKDTPINKQYSVFLADDVCKEIVGEN
                     PVVVYHNNIFNILNKSGLQYDDVYNDNRDFRSLIRSASSKEERQDLSNLRAVKMLMNG
                     FNSDLDVAFKNLNLV"
     gene            14003..14602
                     /locus_tag="OQQ75_000387"
     CDS             14003..14602
                     /locus_tag="OQQ75_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974832.1"
                     /translation="MSRSISEEFKDQKINDLLEDYIALEKQIEKTANLIINAIDETPA
                     RLDAVLSDKVNKIIQSSIDINKDINIAKSDIRQISNECQSEITKQAINTFSGIKQNFD
                     QIASDHKKQLEILTKSAKPFSIKTAIAICALCTLCLSAAFSGATWYVAQHEKEASLRF
                     YARAFLDMKKITEESMRKLPKSDQQNIKLKLDEIDSRKP"
     gene            14622..15059
                     /locus_tag="OQQ75_000388"
     CDS             14622..15059
                     /locus_tag="OQQ75_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001687636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974833.1"
                     /translation="MTTFTDEDKELIKEIRERIGSLDVRDNIERRAYEIALASLEAEA
                     VMFCISGQNVDSEEHVSTSKAVVDAWVEEWNQVDRTPGEPLYKTVPLYHHPVLPASGL
                     VNAVRFYEQVKRENPPVETVAWKDAVEWVLEEACQAVNTGIKG"
     gene            15065..15268
                     /locus_tag="OQQ75_000389"
     CDS             15065..15268
                     /locus_tag="OQQ75_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974834.1"
                     /translation="MATNNRKAKMLISRVYRLCYPSQWLRVSNRRVVLFSFSGIAREG
                     VKDKRSAVQNRWKNHCYLRTKGE"
     gene            15270..15785
                     /locus_tag="OQQ75_000390"
     CDS             15270..15785
                     /locus_tag="OQQ75_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001696189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974835.1"
                     /translation="MALTHRELCQIAYKFLKRNGFKVCFHDRFIAVTSTGEQPDAMGF
                     RNSASCLIEAKCSRADLLADRKKRFRKNPSLGMGDWRFFISEPGIISVEDLPPGWGLL
                     HVVNGRVRKVHGWPKGNCCWGNPDDKPFTGNKQVECDYMLSALRRMELRGHLNEIYDG
                     VIVNKKEGNAA"
     gene            15782..16102
                     /locus_tag="OQQ75_000391"
     CDS             15782..16102
                     /locus_tag="OQQ75_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000206710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974836.1"
                     /translation="MTTLTDKEMIKEIKERIGSLDVRDNIERRAYEIALASLEAEAPN
                     LPGGFTIEEAKELHENLVKSHVSKALSGEKMKKENRDADLRWIHGVIVQAAWFVKASL
                     GQNA"
     gene            complement(16233..16670)
                     /locus_tag="OQQ75_000392"
     CDS             complement(16233..16670)
                     /locus_tag="OQQ75_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000466318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HCS1974837.1"
                     /translation="MFFSVGVETPKDDHTAYGITVPVFDCFDFGCVSAADSQAEIPAM
                     AREAILAIVEEMVISGAHSVDDIHDEGCLTYSANPNYNHCDSWFVIDVDLSEIEGKQQ
                     RINISLPDVLIRRIDGYVRESGGVYKDRSHFLAQAARHELAYK"
     gene            complement(16695..16877)
                     /locus_tag="OQQ75_000393"
     CDS             complement(16695..16877)
                     /locus_tag="OQQ75_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HCS1974838.1"
                     /translation="MKSADLLKELIAAGCELKRHKASSHQIWWSPITGKTFPVPHPKK
                     DLPLGTVRSIKKMAGI"
     gene            17435..17617
                     /locus_tag="OQQ75_000394"
     CDS             17435..17617
                     /locus_tag="OQQ75_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001729106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974839.1"
                     /translation="MSILDKTKDYPEIKRIVINRLLSGSILTGKDEEYIYSQLEKAQQ
                     SNEREKRLQAIKEYTS"
     gene            complement(18004..18282)
                     /locus_tag="OQQ75_000395"
     CDS             complement(18004..18282)
                     /locus_tag="OQQ75_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000545933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CbiX"
                     /protein_id="HCS1974840.1"
                     /translation="MHFTTFLKKHFDIEKVVGTSDSGNDTESIYVYEKGNDCEPLFIL
                     HESWLNAEIKKCGVWTIGNIYSTLEHGKEYSEQELIKMIKEGKVISKY"
     gene            complement(18832..19083)
                     /locus_tag="OQQ75_000396"
     CDS             complement(18832..19083)
                     /locus_tag="OQQ75_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001132407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1974841.1"
                     /translation="MPNENTPENIKRLRQKIGLTQKECAEIFSMSPRTWRRKEEPVGT
                     ASGTALTPVEFKFLLLLAGEHPDYVLCKRNKKNSDSGSN"
     gene            complement(19073..19333)
                     /locus_tag="OQQ75_000397"
     CDS             complement(19073..19333)
                     /locus_tag="OQQ75_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000702243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974842.1"
                     /translation="MKIRKGDRQYYLNKEGDTFHLVKRVKTFSKSATLGKTKATVKTV
                     ADLVFHEKAFDTIDFASDGLRENDKEIVSMMIQEMSEGKNAK"
     gene            complement(19385..19609)
                     /locus_tag="OQQ75_000398"
     CDS             complement(19385..19609)
                     /locus_tag="OQQ75_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000814382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974843.1"
                     /translation="MKQSTFPAIVSTTGHVFSVVRVTLCTICLKHEKTGEAYVVIFTD
                     CHNIRDYKKGVVPVLGELYQEDVDLITGKS"
     gene            complement(19706..19915)
                     /locus_tag="OQQ75_000399"
     CDS             complement(19706..19915)
                     /locus_tag="OQQ75_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020314678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974844.1"
                     /translation="MKVLIGNINIDNYHMLSALAGIAGFDRSIEFTCEISASIEIMED
                     DFVNKAGILKMLDEFIENDFSIKLV"
     gene            complement(19957..20280)
                     /locus_tag="OQQ75_000400"
     CDS             complement(19957..20280)
                     /locus_tag="OQQ75_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020314677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974845.1"
                     /translation="MENHAKFVATEILNQLGGNRFIAMTGAKNFACFDENGESGLCFR
                     LPSNFAMKGINLVKIKLTFSDTYLVTFSRVRGATVKEISKFDNIYCDQLECLFNEQTG
                     LATRL"
     gene            complement(20811..21185)
                     /locus_tag="OQQ75_000401"
     CDS             complement(20811..21185)
                     /locus_tag="OQQ75_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000844303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1974846.1"
                     /translation="MKSIYVVGKGLIVAGNKITIDGKEHVTVENSDNLIVTDDCIKIG
                     NKTVVFKGRSIKIEIHGNVNKIVTENADVIIHGNAGDVETVSGDIDCRQVTGDITTVS
                     GDITCGDISGDVTTVSGDINRK"
     gene            complement(21236..21565)
                     /locus_tag="OQQ75_000402"
     CDS             complement(21236..21565)
                     /locus_tag="OQQ75_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000855123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974847.1"
                     /translation="MKTLTFNNGTVSVGDVFVSSWGYEQTNVNFYQVISVHGKKTVTV
                     QEIRASVHRTHSMSGYKTPLLNDFCGEPLKRRVRDYYSTPAIEIEEFETAYKGSPEEK
                     HEFTSYY"
     gene            22163..22828
                     /locus_tag="OQQ75_000403"
     CDS             22163..22828
                     /locus_tag="OQQ75_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000532148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HCS1974848.1"
                     /translation="MGRALLVASDKGGVGKSTTATNLASYLVNNSRTVIILKTDKNND
                     ILSWNEKRKQNGLLPVPVYEEYGDVSEVIKRLKKICEVLIIDCPGHDSKEFRSALTVA
                     DILLTLVKPSSDFEAETLTHVTEKVRTAQQINPDLQPWVLFTRINTTKPRHRKAAIDL
                     DKLLRENPVWIQPLRTRISDLDIFEAACNEGAGVHDVRRASSLSTAKAQIELLAQELG
                     INP"
     gene            22907..23191
                     /locus_tag="OQQ75_000404"
     CDS             22907..23191
                     /locus_tag="OQQ75_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001542021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HCS1974849.1"
                     /translation="MALDLKTPVIPGQKTEQTNADTARFINEATRKKSGATKVTNVRL
                     GDVYEDILEREALRTGQTKTSIMKAALAAYEHGLDENGKNHWILQSARLK"
     gene            complement(23209..23805)
                     /locus_tag="OQQ75_000405"
     CDS             complement(23209..23805)
                     /locus_tag="OQQ75_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974850.1"
                     /translation="MTAIIEASMQPKKTPVIVVKKRRVLVMPENPVVNEKPQEVQKSA
                     VNENKKVQKKDAVAEKTRKKQPQPWYLKKQITFPPKYPKEYFEKCFNKVRAVFPELWT
                     DEKKNLPLKSGILQDVEKYLADNPDVDLTIEEWNCAVQVMTFRWQYLQNCTVPGATRY
                     DLYGKPAGTVKKAHATYAQLVLDARKKASEKKQLKRKG"
     gene            complement(23955..24116)
                     /locus_tag="OQQ75_000406"
     CDS             complement(23955..24116)
                     /locus_tag="OQQ75_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004118124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HCS1974851.1"
                     /translation="MKQPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGNREVTA
                     SLAYESNGK"
     gene            complement(25525..26553)
                     /locus_tag="OQQ75_000407"
     CDS             complement(25525..26553)
                     /locus_tag="OQQ75_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001175215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HCS1974852.1"
                     /translation="MQLAVISKRHWSELSPEEQVRFWQDYEAGIESSFLVLQENKGGT
                     TKRRRGEHSTKPKCENPAWFRPDNYKALGGQLGHAYNRLVKKDPVTGQNTLRMHMSLH
                     PFYVLKRQSVGRKYKFRPEKQRLLDAIWVVLVSFCDRGLHTVGMSVSRLAEEISPKDS
                     KGDVIPETAVTVSRLSRLLAEQVSFGTLGTSEKTIWDRESRQRLPKYVWITETGWKML
                     GVDLVKLQEQQRKRLAESEIRLQLIKEGVIREGEEISVHSARKRWYAQRSLDAIKSRR
                     KKAAERKRANRLAKLPYDEQRNEIARFILKRMPPDEAYWCTKERLEQLVARDLRQLEL
                     ALTASPPH"
     gene            27631..28137
                     /locus_tag="OQQ75_000408"
     CDS             27631..28137
                     /locus_tag="OQQ75_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiF/GrlA family transcriptional regulator"
                     /protein_id="HCS1974853.1"
                     /translation="MTLYSGDVSISDKQPGENMARKLKINPVIPECVADLKGYPLYII
                     VAYWGLRNNKTLTTTDVSRNFLITQQQSYDVLTYIYQEAQKQITATKRTLFNEHKRRI
                     SAFRILDIDKGILRTPKKEIAYASYDNIPTVTMKSTRCEIQDSFTELRRWMCSRKTGD
                     RVEVFLNA"
     gene            28130..28324
                     /locus_tag="OQQ75_000409"
     CDS             28130..28324
                     /locus_tag="OQQ75_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000049865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1187 family protein"
                     /protein_id="HCS1974854.1"
                     /translation="MPKYQINATIKKPGGGPVKWTHYSDFPMTAEECRKNFSKEKEAG
                     KCFSVDVHISDFICKEIHPQ"
     gene            28370..29323
                     /locus_tag="OQQ75_000410"
     CDS             28370..29323
                     /locus_tag="OQQ75_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HCS1974855.1"
                     /translation="MVTSIPLLLLILVALIFVKSAVKIVPQGNAWTVERFGKYTHTLS
                     PGLHFLIPFMDRIGQRINMMETVLDIPKQEVISKDNANVTIDAVCFVQVIDAAKAAYE
                     VDNLASAISNLVMTNIRTVVGGMNLDDMLSQRDSINSKLLTVVDYATDPWGIKVTRIE
                     IRDVKPPKELTEAMNAQMKAERTKRARILEAEGIRQSEILKAEGEKQSQILKAEGERQ
                     SAFLQSEARERQAEAEARATKLVSDAIAEGDVQSVNYFIAQKYTEALQAIGTASNSKL
                     VMMPLDSSSLVSSVAGISELLKNVSQDTPKVDMKQAQQYLS"
     gene            29703..30146
                     /locus_tag="OQQ75_000411"
     CDS             29703..30146
                     /locus_tag="OQQ75_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HCS1974856.1"
                     /translation="MLWFTLFLLCIALEIITGTGWLLLISLGALSSAIVDFFLPISQE
                     ANICFFASISILTSIIKFVYDKKHKKLDTPLVNTGHTRFKGKEFTLSDDIVNGKGQLL
                     IGDTFWPVETLHDENYPAGTRVIVTDMQGITLKVMTIEDKSENKE"
     gene            30150..30320
                     /locus_tag="OQQ75_000412"
     CDS             30150..30320
                     /locus_tag="OQQ75_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000550720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974857.1"
                     /translation="MHLSLLIPLTGAAMNALCIFIIRLLDKDFIEVYKKTLKKITALH
                     ILLMVLSVTGIV"
     gene            30331..30984
                     /locus_tag="OQQ75_000413"
     CDS             30331..30984
                     /locus_tag="OQQ75_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001243162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974858.1"
                     /translation="MRNANEGISLAAIVAKETTTGKWNGTGGGIGLGTGGIGLFIGGV
                     SGSKQEQTQRAKNFESPKEEEYSLLNVYGSIIKVLVFGVLFGLSARLFTFLSDTGSDF
                     AEPVTTTTATGKIQSILGGMAEMVSILGTVVPFLVIIIAMIWFLFFSSKREKEEFTRV
                     EREAAKTKLRIDVYHRLRYVESDHVVFDPITGREVPAERACINKLIEALADESNNVS"
     gene            31256..31558
                     /locus_tag="OQQ75_000414"
     CDS             31256..31558
                     /locus_tag="OQQ75_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974859.1"
                     /translation="MTQAKANLRKLRRARYVPPRTVKKSIANTERVVSKAITGCGVFR
                     DIPQVKINLIETRKILQIELALSIANLSEANPIEIRKKIKSIDRQLSSTSKIRTTL"
     gene            31555..31812
                     /locus_tag="OQQ75_000415"
     CDS             31555..31812
                     /locus_tag="OQQ75_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000739144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974860.1"
                     /translation="MKKNDDLITLPSHNSHALDYIIKKAFTPRKTKTSTATHNVYSYN
                     KEESTLNFQKIGEAIFFGTDLVIKLKPNISASGELFICQKD"
     gene            31816..32811
                     /locus_tag="OQQ75_000416"
     CDS             31816..32811
                     /locus_tag="OQQ75_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1974861.1"
                     /translation="MNIVSEFLEKVTTIVESTAATNAAKVAQAISPTFFAAIALYVIY
                     LIYEITYAQRDILMNEVTKNIGAFALVGAFTYSAPYYSQFVIPFVMHAGSDLSAAVTG
                     GSGTATSVDNLWNALSTNLNNFLNTSMSIYGKFQIAEKMGVYLVWGIGYIGGMLLIYY
                     TTVFLTLSTFMVGILLSAGILFICFALFSSTRNMFTAWVGSCLNYILLNLFYSISFSF
                     LISFVESVVPVNGDIKLSIVVYFFLITIISIFLIEQVGTLCSTLTGGVGINGLTSAAN
                     GFGGKVASGFMRASGLRSFTNGFASKMPNPIFNAGSRSASALVQGLNRGSKLKAG"
     gene            32817..33461
                     /locus_tag="OQQ75_000417"
     CDS             32817..33461
                     /locus_tag="OQQ75_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001542014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbJ"
                     /protein_id="HCS1974862.1"
                     /translation="MKDKVLSFLFAGIITVTSPSIFASGIPVVDVTAIAKTVEEGLNR
                     AAEAARQLEQLKQQYEQTIRYAEEQKKRLEGFTDFSNGFDSASSYMKDSLSTITNSAK
                     SDLSSLRSQYDLSSNIAETQQKYDAILAKIKFYENFNNEMQERAKRLTTLQKEFASAD
                     TPQKKADLSNQLNTEKLTMELQLKQYDIAERQLIASENARQEAVSREKFKLMMQ"
     gene            33470..33694
                     /locus_tag="OQQ75_000418"
     CDS             33470..33694
                     /locus_tag="OQQ75_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000713562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HCS1974863.1"
                     /translation="MKKFISTLTILSCFLLAACEDKVYDVSYYAEHLEQAQDVVEKCS
                     KGDMSGQNCENAREAIQKEQSGKAFKNMMQ"
     gene            complement(33917..34726)
                     /locus_tag="OQQ75_000419"
     CDS             complement(33917..34726)
                     /locus_tag="OQQ75_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001708014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1974864.1"
                     /translation="MNEPLEAELHSLFSFDIYPGASSEQNTGVKLAMARFYLNVPFEE
                     KDLAKQKGAQWDQEQRKWFVPQGKNPIYFIRWIKELNEHDYNVFSQRFYIAESYQSCW
                     RCKKTTPVFGIFLPRWYKYRDVIWGVDPAEWEDCILDEWYETSSPKGMEYFDSKKNMI
                     YRWLTSRVWWTDLTKIEIISTSALSRINEYSKLYYPSHSKTAKMNYYANHCCHCNAMQ
                     GDFMMFNEPGGVFFPVTYEQAEKIRFHEVNETIFAKASYSLIPEAGGFIDL"
     gene            34774..35409
                     /locus_tag="OQQ75_000420"
     CDS             34774..35409
                     /locus_tag="OQQ75_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000835772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974865.1"
                     /translation="MKSIILSMVAATALLSGCADSKTQPVPESPLTSNDHQITLKIDT
                     VRTDLPDSSPVCLNGMNIYESLSERHPGLFAKNQNVIFRSAFFDDGQAISSETIRKIM
                     QSTPCVESQTTSAGSWEPATELIPRQAISGDTTLAEKDRTAGFTMRIAPEIERGNFHL
                     LLTTTDPIRKQTVEQNILLKPDQPLIVSGFTGVNADSQSEKRIVIITPHVR"
     gene            35581..35868
                     /locus_tag="OQQ75_000421"
     CDS             35581..35868
                     /locus_tag="OQQ75_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HCS1974866.1"
                     /translation="MLSMIAASAIALSAPVYASDPCASVLCLYGKAIGSGGGSECKSA
                     EKDFFNIIKKKKGSIRWSKTFDARKAFLNQCTTADPAAISKIMSKFGRSWG"
     gene            35871..37106
                     /locus_tag="OQQ75_000422"
     CDS             35871..37106
                     /locus_tag="OQQ75_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TcpQ domain-containing protein"
                     /protein_id="HCS1974867.1"
                     /translation="MKKIIIIPTTLLLNACSHAPEPAQAKGGWYELNTTIEQVRADTY
                     HNGVVLQQPVSQPNSTVQYSNDNYLKKEAINVTPAPRIAETVKPRSEQSATAPKNQDS
                     NNSFLKPTTNSITSSGEIKTAAKGATKQHSEQPALPPAKPISSNNHQAQTAQNTDQQT
                     KPRPEQPPLMSKSGFLKKNANNAVPATTLTGPSTPEKQIYFVRHDGKGSLQKAVKEIV
                     PSDWTAEISPEVTKTFRRTISWQGNDQWPYVLDKMLRNYGLTVIKNTEKRHLLIDFQQ
                     QKGKTSQKAPVSPDKTPASPVRTPVSSDKFPQKPLTPVTVPQKQTEKLTWNLKKGSTL
                     RDGLTEWASSSPCGNSTWNLVWDTPVNYRIDAPLIFRGNFESALKDTLMLYLSADKPL
                     YAFRNIAQCVITIKDTQQE"
     gene            37112..37549
                     /gene="pilM"
                     /locus_tag="OQQ75_000423"
     CDS             37112..37549
                     /gene="pilM"
                     /locus_tag="OQQ75_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000539664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilM"
                     /protein_id="HCS1974868.1"
                     /translation="MGWFFSLLLIFLSIGSYYLTDNNNQTIQRMKLLPAKQEAIEFVH
                     FANVINDYLYKYPDKRNSGGTLTSEQIGITPVYDIHHIIYGKRVYIWSADTEGLMSAL
                     QQQTKHSAMLGRVKNKKIVDNQGNDMGVPVPSSIPEEAIVLIN"
     gene            37668..38066
                     /locus_tag="OQQ75_000424"
     CDS             37668..38066
                     /locus_tag="OQQ75_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001153664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974869.1"
                     /translation="MQDNDDVSELDIATREVLILRCNLIQLASEYIKINPLKNTRIYT
                     DLIHRSADVIKNIEQGNIQNKHNYLSQDVKHTLVLYDLYKSDFEQCPGAKSLIPVREK
                     IVSLKELLSGANELDSIVRRPRRKKRSSRI"
     gene            38087..38671
                     /locus_tag="OQQ75_000425"
     CDS             38087..38671
                     /locus_tag="OQQ75_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001401693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS1974870.1"
                     /translation="MQLSAAVLAALISQCAPDVSPDTMNALIMTESGANPYVIANVSD
                     GTSKYFKDEKGAIEYAEKLTAENKRFSAGLTQIYSKNFPSLNLTNKTVFDPCTNIKAG
                     AAVLTDNYLRQKEGSNNQKILRALSLYYSGNESTGFIKEKKFNNTSYLERVIRNANNY
                     IVPSIREKTDESEITPPNDEEKTSPDWDVFGDFS"
     gene            38773..38961
                     /locus_tag="OQQ75_000426"
     CDS             38773..38961
                     /locus_tag="OQQ75_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HCS1974871.1"
                     /translation="MTELKTWAFSFGGVCALCYLIYNVIMAFMEKKSWSDVGMALVYC
                     SLAGGALYAGNWALELFK"
     gene            39032..39352
                     /locus_tag="OQQ75_000427"
     CDS             39032..39352
                     /locus_tag="OQQ75_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000362081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HCS1974872.1"
                     /translation="MDKVNEHVSESFMTYNGFNRPALIAGIPLMLLLFTAFFAVLTGF
                     PAIFLWGIKGIIIPVICALFLFIVKLACENDSNALRVIRLNLMGLLLKIRHRDLIIGY
                     SSVR"
     gene            39358..41715
                     /locus_tag="OQQ75_000428"
     CDS             39358..41715
                     /locus_tag="OQQ75_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000548955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HCS1974873.1"
                     /translation="MHKIKLKNSDNMDVAREYPDYRFHITDSIIFTSDRKMLASLVVA
                     GIPFETENDNVLTNLFNSVKNFLIGLGKEGDLYLWTHLIKKRITIDGEWNFDNAFLSR
                     FSKKYLALFTSSAFYKSTWYLTFGIPYDDVDTGIERMNEMTQQAQKALQPFNASVLSV
                     HNTYISEVADYLSLLLNTEHNMIPLSSTPLSSSICDSEWYFGADVLELRNNESDSKKF
                     ATNYILKDFPIETTPGQWDFLLKQPYEFILTQSFIFESPTKTLKNIDSQLNKLQSAND
                     AAKTQQEELEAGKEAVAAGITLFGSLHCALTVFGDTPDQARSNGIKLSAEFITSGKGF
                     RFSRASLASPFVFFSHMPLNKRRPLDTRRTITNLACLMSFHNYSSGKKSGNPIGDGSA
                     IMPLKTVSDSIYWFNTHYSPPEKNVTGQKIAGHGMILGATGTGKTTFEAAASGFLQRF
                     DPLMFVVDFNRSTELFVRAYGGSYFTLQEGIYTGCNPWQLAAGPESPVWHRLLAFLKR
                     WTQVLARDNQGNPCSDEHGIELNAAVESIMRMPVEERRTALLLDIVSPELQTRLAKWC
                     DNGEYAWAVDSPRNTFNPLHHKKVGFDTTVVLDTKNGIHPACEPLLAVLFFYKEIMQR
                     GGNLMLSIIEEFWMPANFPMTQSMIKSALKAGRMKGEMMWLTSQSPEDAINCAIFAAL
                     VQQTATKILLPNPDAKWEGYKEIGLTEKEFEKLKELTKESRTMLIKQSGSSVFAKMDL
                     FGFDEFIPVLSGSETGLSIFDEIIAEKGDVAPDIWIPELLKRLNG"
     gene            41881..42615
                     /locus_tag="OQQ75_000429"
     CDS             41881..42615
                     /locus_tag="OQQ75_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000432282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1974874.1"
                     /translation="MENTNYYEHSKKEASKKKFEEKNEKKDYFKAIRDFERSEIEIIK
                     KKAKTFTILAIGEFVVICILGFAIASLAPLKTAVPFLVRVDNSTGYTDIAPQLSDAKE
                     SYQDVETKYFLSKYLINYEAYDWQTIQEQADTVKTMSSQKVFSAYDTMIRADSSPLNI
                     LKNNYKIKVQINSVILLRKDMAQVRFKKMVLDLSGKPAPGYRATEWISTISFDWDKDI
                     KTEKERLVNPLGLQVLSYQPDPEVIK"
     gene            42681..43382
                     /locus_tag="OQQ75_000430"
     CDS             42681..43382
                     /locus_tag="OQQ75_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000274524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbG/VirB9 family P-type conjugative transfer
                     protein"
                     /protein_id="HCS1974875.1"
                     /translation="MYGTPSERDGRIQTVDYNEQDVFNVRVKAGAQTTIKFGQDETIK
                     DVGIGDPEAWSVSVRDNTLFLRPKAEEPDTNVTVQTNKHIYPLYLISTTKQPTYILRF
                     NYPKPPSATVMTEKPFPCTDGGIINGHYQLKGDKSIFPYQVWDNGEFTCMRWTNKQEI
                     PVLYRVDADGNEHLVNGDRNKNTMVYYDVAENLRLRLGDQVADIRTSSIVNRPWNKKG
                     TSNGKTRVEKFSYEK"
     gene            43372..44511
                     /locus_tag="OQQ75_000431"
     CDS             43372..44511
                     /locus_tag="OQQ75_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001542008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HCS1974876.1"
                     /translation="MKNKDDEKNNDAGNRGIIEVKGKAAPKKILILIILLIAALFVII
                     ILFKVLSREQVVQQTPLEKSDETLVTNTNNGVSLTTMMKNIEEKEKLDAANRRKAQEE
                     QEQKQADNAPSAPASQKADQTAVNVIANGTPQTASGDPNQPQPLPKSVRQLMGDTMVK
                     IDNQEPGEKNQERDDLQGSQYADGKVSPVLNRRYLLSAGTALSCVLKTKIVTSYPGIT
                     MCQLTRDVWSDNGEVLLARKGALLIGEQNKVMTQGVARVFVNWTTLKDENVNVRIGAL
                     GTDSLGASGLPAWVDNHFGQRFGGALLLSLLGDGLDILKNSTQQTGSNSNITYENTSD
                     ATKEMAKTTLDNTINIPPTAYINQGTVLSVIVPRNIDFSSVYELQ"
     gene            44530..45585
                     /gene="virB11"
                     /locus_tag="OQQ75_000432"
     CDS             44530..45585
                     /gene="virB11"
                     /locus_tag="OQQ75_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001708009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HCS1974877.1"
                     /translation="MNNIRDTSNTSQPRDNSKTARRYLDMTGIQSVLNIEHVTEISVN
                     KPGTIWFEGKNGWESKDAPDATFDNLMTLAKTLTNLSKIKIPLSHDNPIASVVLPGGE
                     RGQIIIPPATENNSVVISIRKPSLTRFTIDDYVRTGRFDNVRIATKHEAILTERQRYL
                     YELSRRPDGQSKAQFLREAVKDRLNFLIVGGTGSGKTTIAKAIADIFPPERRYITVED
                     VPEMSLPLHPNHIRLFYKKNTVEAKEIIEACMRLKPDHIFLAELRGNEAWSYLEALNT
                     GHEGSISTIHANNTYASFSRLASIVKQSDVGMTVDMDLIMRTIKTSIDVILFFNHTRM
                     TELYYEPEEKNRFLSTM"
     gene            45601..47559
                     /locus_tag="OQQ75_000433"
     CDS             45601..47559
                     /locus_tag="OQQ75_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000338972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HCS1974878.1"
                     /translation="MDAKKTGGLILFLLLLLVGVLIASNYLGGYTALRYSSVDMSLLK
                     WDTFHSVISTFSGNPQYKKLVFMAWFGFSVPLIFFAIFMLIVVIGIMPKKVIYGDARL
                     ATDMDLSKSGFFPDKKSPYKHPPILIGKMFKGRYKKQFIYFAGQQFLILYAPTRSGKG
                     VGIVIPNCVNYPGSMVILDIKLENWFLSAGFRQKELGQECFLFAPAGYAETIDQAIKG
                     QIRSHRWNPLDCVSRSDLLRETDLAKIAAILIPASDDPIWSDSARNLFVGLGLYLLDK
                     ERFHLEQKAKGHNVPDVLVSISAILKTSVPDGGKDLAAWMGQEIENRSWISDKTKSFF
                     FKFMSAPDRTRGSIETNFSSPLSIFSNPITAEATNFSDFDIRDIRKKPMSIYLGLTPD
                     ALITHEKIVNLFFSLLVNENCRELPEHNPDLKYQCLILLDEFTSMGKSEVIERAVGFT
                     AGYNLRFMFILQNEGQGQKSDMYGQEGWTTFTENSAVVLYYPPKSKNALAKKISEEIG
                     VRDMKISKRSISSGGGKGGSSRTRNDDVIERPVLLPEEIVSLRDKKNKARNIAIREII
                     TSEFSRPFIANKIIWFEEPEFKRRVDIARNNHVDIPNLFTQEVMDEIAKIAEIYLPKA
                     GGKKVMVAGGNVITNPDLDNHDKTDVSE"
     gene            47610..49253
                     /locus_tag="OQQ75_000434"
     CDS             47610..49253
                     /locus_tag="OQQ75_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001035590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN family type IVB pilus formation outer
                     membrane protein"
                     /protein_id="HCS1974879.1"
                     /translation="MNKKLLCLLISSFLLSGCANFKKINANELAAERDAQKATEYAKK
                     IRNNPVIQDSTKQWINTTPIIEKQVKQSAPPCPIVINTRSDIELRQIAQRITQTCHIP
                     VRISADVWTYLNGTGTGSTQQMTGSIPAPDANGMVPLASVGSQPVKVSSGGTSLPELN
                     ISGLPALLQTVSSRLGISWKYDKGRITFFYLETRSFPITYMDSNVAYNSKVVSGTMSS
                     SGSTGSTSSGGMTGDASNTQTTTVEMKSSLYNDLKSEVSSMLTPGTGRMYLSTGSLTV
                     TDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIKKSSQEQAGIDWNAVFNDGHLGLS
                     LGGSFGDAAENVITSGVSIVDGKLAGSKAFLKALSSQGSVSVVTQNSAVTKNLTPVPM
                     QIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTLLPYIQPDSQNLQLLFSMSL
                     SDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILSGFQQSNRKTSKQGVITP
                     SFFGLGGGVNSEDGDTILVVLITPNVLNSGSSAVIKNVN"
     gene            49292..50614
                     /gene="pilO2"
                     /locus_tag="OQQ75_000435"
     CDS             49292..50614
                     /gene="pilO2"
                     /locus_tag="OQQ75_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000454144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4b pilus protein PilO2"
                     /protein_id="HCS1974880.1"
                     /translation="MEVTLSENNQNNRNFTSVIKNKRAFFSGLDWKTLPSEEKNARTF
                     ARKNDAEYFLSCQYQDSENETKTMVAFIRKEDLPTGASSFWSLALMIKPLIEPDGYAI
                     CELGDLYGFVSCVNNVLVNDVVGNKSQIMSALTTFLEFNETPEPGWKLYQPESWDISQ
                     ALPSLTLSALIDVKKPPKEAAFTRVSRKRQFMIYGGSAILAILLWNGITMYQEYREKE
                     AAAEAARLRLAKEMADKQAIQIAPPWQHLPEIKPFIDKCIDKWDALPLSIAGWRFDLA
                     ECSTSGNDGLLRTSYKELSGVTVEDFSTRIREIFQGTTTATFVLPEGSAGGFSLPVSF
                     DVSPDPITPDTLPQATDIQERLTTFAQKMRLKLTWQEIENTKTDEEGRPIILPWNEYE
                     LMIQTSTPPSILFANFHEPAVRFQYAGIKLEEGRLNYEIKGAFYVKNN"
     gene            50598..51092
                     /gene="pilP"
                     /locus_tag="OQQ75_000436"
     CDS             50598..51092
                     /gene="pilP"
                     /locus_tag="OQQ75_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001401690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilP"
                     /protein_id="HCS1974881.1"
                     /translation="MLKIIKPTIISVFFFSSLAYATESESTPKDEIKYSSPTILQVEQ
                     IQAETVIYEAKLARQKAVSELRNLDLNGVASATPAITPSSGYSSLADTDIPAQRVAAK
                     SLRVIEIFGTPQQMSARISLLDGSVTDVKVGQSIPGTSYKVASITGNGVWIQNGTEKR
                     QLIL"
     gene            51117..52655
                     /gene="tadA"
                     /locus_tag="OQQ75_000437"
     CDS             51117..52655
                     /gene="tadA"
                     /locus_tag="OQQ75_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000466225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HCS1974882.1"
                     /translation="MFFSDADYPGKDISDVVYVSISEKDDKPVHVYIADNSKGQRAVQ
                     AYIGTLNVKYPGKVNITWTTLDVIASRYQDSERRSDSNSSQHLNSNQEKVISYLAKAN
                     NLGSSDLHITPGRDGSEFTYVEARVHGELEILDVIPRKEGLELLGAAYSGMSDVIKGT
                     QFDPAIPQDARIAENFLKPVNLFGARYSHYPCVGGVYAVFRLIKDDSEDIPTFEELGY
                     MPQQIQTIRRMLQRPEGIIVLSGPTGSGKSTTLRTASEAYLSTFGFNHNDNMRLPRKR
                     LFTIESPPEGRIPGAIQTAVRDSVDGWVDAIKSAMRLDPDAILNGEIRDHASALAAIK
                     ASMTGHLLLTTLHANDALNIIERLEMENIQARLIADPLLFIGLLSQRLVQKLCPYCKR
                     TYAEMADKLSTEERKLIEENCLPEQVRLRNLDGCEHCYKGVTGRTVIAEVVSPDARFF
                     QLYRQSGRLEAKSYWHYELGGITRNQHLLHLINHGLVDPLSAHFISPIDEDKYSMLPE
                     GTWR"
     gene            52646..53755
                     /locus_tag="OQQ75_000438"
     CDS             52646..53755
                     /locus_tag="OQQ75_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000974900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HCS1974883.1"
                     /translation="MAIKDIFEKLNSIEIDFSGISHWLAKYTFRYSRISLYEDLSGML
                     NDGINVKRALTHLIDVETDYGKKTGSSATYYICCECLNALNNTGAISSALKKYIKEDE
                     YQLISSGEIRGDLAGGLVQAIKIVRSRSEMTMTLVMSMIYPSVLVFGCLANMYMVHDT
                     ITPVFLSLAPKERWTSSMRLLTDTSGFLIENGTYILCFCIVLFFLIRYSLARYTGPGR
                     QYLDYIPPWSLYKTFNGVSFLFNMASMLSIDIPVAKALERLEKNSTQNRWLLERIKEI
                     RRYVLLGQSLAMAMKSCGYDFPSKLCINKLLLHSENADNALMMSNYADKWLEEAKGKV
                     KSTGVWITVVSALIVFAFIVMMITALYDVSNVLQH"
     gene            53800..54357
                     /locus_tag="OQQ75_000439"
     CDS             53800..54357
                     /locus_tag="OQQ75_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000095049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1974884.1"
                     /translation="MSSINILNMRSVFSSLSARRKKEQDKGATLMEVLLVVGVIVVLA
                     ASAYKLYSMVQSNIQSSNEQNNVLTVIANMKSLKFQGRYTDSNYIKTLYAQGLLPSDM
                     IADTTGASAKNPWGGSVTITTSSDKYSFNVVEANVPQKNCMAMVNALRSSSAISKINN
                     TSTSTVSAATVCASDSNTLTFSTDS"
     gene            54423..54905
                     /locus_tag="OQQ75_000440"
     CDS             54423..54905
                     /locus_tag="OQQ75_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001258095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS1974885.1"
                     /translation="MRSVLYILLSCISSLIFSLQPAYSATTTRFDACFAQAGQRYLID
                     PLLLKSIATVESSLIPDRINHNKEKGKILSTDYGLMQINSSHIPNLKKLGVIKDKSEL
                     IDNPCLNIQIGAWILATHFQKCGINWSCLGSYNAGFKESNEQKRIKYARYVYNKYMVR
                     "
     gene            54909..55544
                     /locus_tag="OQQ75_000441"
     CDS             54909..55544
                     /locus_tag="OQQ75_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000934977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS1974886.1"
                     /translation="MLNSIFNTAILCCANIVCQCYAYNEVKSRLNKLNVSYKTGTEKY
                     YCLILTTLAVLYLSLNQLSLIQSIIVIVFYAFLTLMACIDLLSFLLPRLYTVTFIFSG
                     LLYQTWNNNILSGLFCAMLMFFIMLFVRLYFAYKNGTESFGMGDVLLIAGTGVWFPTP
                     EIACSIVFIAVIGGIIFFTLGGLNKQKKYIPFGPFLCGGMFVYSLVPGILF"
     gene            55557..>56570
                     /gene="pilV"
                     /locus_tag="OQQ75_000442"
     CDS             55557..>56570
                     /gene="pilV"
                     /locus_tag="OQQ75_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000750525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shufflon system plasmid conjugative transfer
                     pilus tip adhesin PilV"
                     /protein_id="HCS1974887.1"
                     /translation="MKKTDKGVSLLEVLLVIGIMVMVIPKVYENIENHLNNVRWQNAA
                     EHANTYNTAVRNYVADNASTLLAGSLPKTITPATLIQKGYLKSGFSESNFGQSYITGI
                     AKNSKTSRLEALTCSNGGQSLSEAGMRSVASMIEGLGGYINSSKQAIGAGGGWSDTPS
                     NYGLNCATGHIAMALVGADLQESDRLYRYSITNRPDLNRMHTAIDMNSNNLNNVGTLN
                     GNAAALSGDISARNGTFSGAISGNTATTNGDITSNNGWLVTKNSKGWMNSTYGGGWYM
                     SDSSWLRSVNNKGIYTGGQVKGGTVRADGRLYTGEYLQLEKTATAGASCSPNGLVGRD
                     STGA"
BASE COUNT        17093 a        12261 c        11576 g        15640 t
ORIGIN      
        1 ggcctccgtg ccaatccggt tcgtggaaat caataggttc atctgcgccg tggacatcag
       61 taacatcctt caccttgtac ccaaccacaa cgaaggctct aggaaaattc aaactttgcg
      121 ttaatacata tcgcatagat ggaaaggaaa ccgcgatgac gcgtgtctgg cctacagaca
      181 atccagatgc aaacggcgag atgaactgga gtgcgtataa cggtacgtta tatggcagct
      241 actacatcac tgttcactgc ttccgctaat tcataccaga atactcactg acacaatgca
      301 taagtagtga ctgaataata ctgattctgg ttggtgtttt ggctgcaacc agctacccat
      361 gcactgttac cggaggggga agaacgcttg agaatggcat ttgaaaagct gcacattcca
      421 ccacctcctg taactttctt tcctgaaggg caagtcgcgg tggcaattgg ctgattccag
      481 tcacttgctg tcgcagtaac catctgtact gtaccgccgc catttttctg ccacgtaccg
      541 gattggcacg gtgatattgc atttcgaagc aagaatctct accttccccc cttttttgtc
      601 tggaggggat atgtttcaga aaatcaaaat tcgcaaaatg acaatcagcc gggcgctgga
      661 caaatacctg aagacagtat ccatccacaa aaaaggccat ctacaggagt tttatcgcgt
      721 aaatgtgatt aaacgtcacc ctattgctga acgctatatg gatgacatta ccactgttga
      781 tattgccaat tatcgggatc aacggttggc gcaaattaac ccacgaacgg ggcgtcaaat
      841 aaccggaaac accgtccgtc ttgaacttgc cctgttgtca tcattattca atatcgcccg
      901 tgtggaatgg ggaacatgcc gcatgaatcc tgtcgaactg gtcagaaaac ccaaaatcag
      961 tagcgggcgc gatcgtcgcc tgacttcagg agaagaacgc cgactttcgc ggtatttcaa
     1021 agaaaaaaat caggctcttt acgtcatttt tcatctggcg ctggaaacag caatgcgaca
     1081 aggtgaaatc ttgtcattgc gttgggaaca cgtcgatctg caacatgggg tagctcatct
     1141 tccaacaacc aaaaacggtg ctccacgcga tgttccgcta tccaggaaag cccgtaatta
     1201 cctgcaaatg ctgccgacac agcttaacgg taatattttt tcttatacct cttcgggatt
     1261 caaaagtgcc tggcgaacag cacttcagga actgaagata gaaaacttgc attttcatga
     1321 cctccgtcat gaggctatca gccgattttt cgaacttggt acattgaacg tcattgaggt
     1381 tgccgctatt tcaggccatc gctccctgaa catgttgaaa cgatacacac accttcgggc
     1441 ttatcaactt gtcagtaaac tcgatgcccg acgcaagcaa accagcaaaa tcgctcccta
     1501 ttttgttccc tacccggcaa cggtcgagaa cagaaacggg caagtcgttg tgactctgag
     1561 tgatttcgac ctggaaacaa gcgcagccac aaaagaacag gccatatttc atgccagcgt
     1621 gttgctgcta cgaacactgg cacaagccgc ccagcgagga gaacgcgtcc ctactcctgg
     1681 cgaacttcct acaaacattg atgaacgggt aatgatttgt ccattaacaa attagaggat
     1741 tcacttatga tagaacaact acagagtgat tttttattct ggatatttat ttacttcctg
     1801 atagtaggtt tgcttatcag aaacattcat cttaccagaa aaattaaatc catcgaaaaa
     1861 aacaaaatgt tcccagcgga ggaatatgct gtcctggaca tagaacagca tatgtccaat
     1921 aaatatattg ggcggctagt aacccgtttt atgaagagaa ctaatggtgc acctttgtta
     1981 attgtgtttc cagaatacga taaaggagac aacaatgaag acaaaaattc tccaccattc
     2041 caacttgtaa aactaacatc caacatcaac aatattaaag aaatttattc caatgatgat
     2101 tcaaactgtt ttctgaataa tattttggca caaaaaaatt tatatacaac gcactctgga
     2161 cctagccagg catggattga acatgcatat cctttgcaac aagtaactat tctcttacaa
     2221 ggcactcgtc atagtgaaag ggaagatata atcagtcaac ttgagattat tctttccaga
     2281 ctaaaaaatg gagaaaatac aggttttgag catgacgatg attttggata ttcatttcag
     2341 tatgatgccg cagcagtagg gaaatcatca tttttcgatg aagcggcagg aagaaaataa
     2401 gaataacgct ctatccattg cacagacaaa ttaacgttaa tcttttatga aaatcttatt
     2461 aacaatattt atttatctgc ttaccgcttt tcagtctgca aatgcaggtg gaatacctta
     2521 tacatttaac cagaaaattc ttcaggggaa agttattcgc gttctcgatg gcgacaccat
     2581 agaaattaaa acactacccg caaaaattgt tgtgtatgaa gttccgatcc gagtccgatt
     2641 gataaacatc gatgcccctg aaaagaaaca accttttgga cgctggtcaa ctagtcagct
     2701 taaaactctg gttgcaggta aacaggtgac agtctcttat tcacataaag accgctacgg
     2761 acgcattatc ggtcatgtgt tcacgacgaa cggcacggat gccagccgct ttatggttca
     2821 gtctggcgct gcatgggtat atgaacgtta caacgtggat gagtcattac cggctctgca
     2881 acgggaagcg caggaacaaa aacgcggttt gtgggccgat gcaaatccgg ttccaccgtg
     2941 ggagtggcga tacaaacata actaactgat agaggttttt atggctttat cccccaaaga
     3001 aaagaaagag ttacaacaac gcttcgaaaa gcaattacta cctgaccttg atatgtcatt
     3061 tgaactaaat ggcgaagtat ataaatttaa ttttgataaa aatgagtcag gtgactatat
     3121 cgatagtttt acacaagcag tatggggagg ttatcaggat gccgaggaat gggaaaaata
     3181 tggtaaacat caggagacag aattacctga atgccctgaa ccagtcgagg gttggtgcga
     3241 ctgtgataaa tgtaagtcga tgatttttca taaagagaaa aatatttatg tttgcctctc
     3301 ctgccataaa caaacagagc catttcttcc aattgactgg aactcaaacg attacgattg
     3361 gctaccttat gaagatgaat actaatgctg aatacttcaa aatcataatg ggggaaagaa
     3421 atgcattctt cttttggttt gccatatcct gctggtcact ggatgtattc gttatacgat
     3481 ttactcgata attcagtgtt cgtggtttgt ttctttgcct tctgggtggc aacgggtcaa
     3541 tttttattaa gaactgtaca cagaaaattt aatatacctg aaatggttga gttttttatc
     3601 atttttttat taatgatact aatgagtctg tctttttatt tttgcgcaat attaaagact
     3661 tatctttaat acgcaatggt gaacttgttt accatgaggt caacaaatca gagcttcttt
     3721 gagtacgtca aagataaagg aaattactat gtatatacat attgttccta aactttatca
     3781 tctcatggct aataaatgta gccttaaatc tatttccata cctgagcttg attttataat
     3841 tgatagtgaa tcattgtctg tagggaggcc gtggcctaac aaatgtttgt gggttggaat
     3901 gcgaaaagga aggaagtcag ttaatggcct cgttttgcaa acagataaaa aattaagatg
     3961 gtttactact atatacacct gggatattga agatatgggg ttaatttacc atcaagtcaa
     4021 tacctatata gaagatgatg attttgatat ggtttcacag gaaattcttt taaatggttc
     4081 ttttgataag tggagttaca gggttcattc agcttatgaa aataagcctc cagccagaat
     4141 ccagcccaaa atggagtcct tattaaataa acctggtgaa aacagtcatg atgtgtggga
     4201 agagttcgaa tggggtgact tccttctgtc cagagaagaa agccttttac ttcacactat
     4261 tcagtctgaa cgattgagta cagattgctc tttattcaaa agacaacctt ctattgaaag
     4321 tgcattagtt atttaaagga taataagatg agacttttta tcgcagaaaa acccgcagta
     4381 gcgaatgata ttgttaaggc gcttggtggc aattttaccc gtcatgatgg ctggtttgaa
     4441 agtgataata ctattgtgac taactgtttt ggtcatatta tcgaatcaca gccccccgaa
     4501 aactataatc ctgaatacaa agagtggaag attgaaacac tccctttgcg tctttatccc
     4561 gtaaaatacc agcctgtaga aagcgccgaa aaacaggtta aaacgattat tgagcttatc
     4621 aggcgtgctg atgtgaccga aattattcat gctggcgatc ctgatgacga aggacagcta
     4681 cttgtcgatg aggtcctgga atatgcaggc aacacaaaac ccgttaagcg cgttctgatc
     4741 aacgacaaca cccttccggc agtgaaaaag gcgctggcaa atcccaaaaa taaccgtgac
     4801 ttcagaggac tctatctcaa ggctctggcg cgttctgtag ccgacgcgat atacggttta
     4861 tccatgacgc gtgcttacac aatcccggca aaaaataaag gctataaagg tgttttgtct
     4921 gtcggacggg tccagacacc cgtgcttggc ctgattgtaa atcgcacccg tgccaataaa
     4981 aatcataaat ccagcttcta ctacaccatg accggacatt ttcaacgcgg cgctgatgtt
     5041 atcagggcga actggaaacc tggtgagttc gcaccgctga cagaccgcaa attgcttgat
     5101 aaaacctggg cgaatggaac agcaacatca cttgcaggaa aaccagccac agttgaagcg
     5161 gcagcaacag atgataaaaa aacggctgca ccgttgccct ttaacctggt acgacttcag
     5221 cagtacatga acaaaaaatt caaaatgact gctcaaaaaa cgctggatat cacacagcag
     5281 ctacgcgaaa aatacaaagc aattacttac aaccgttcag attgttcata tctttcagac
     5341 gaacaattca gtgaagcacc acaaataatc gatgccctga agtcggtgtt tgatcagcca
     5401 atggatattg atacgacacg taaaagcaag gcatttaaca gcgcaaaagt aacagcgcat
     5461 acagccatca tcccaaccgt tagcgtaccg gacgtaaacg cactgagcac cgacgaacgc
     5521 aacgtttacc tggcaattgc acaacactat cttgtccagt tcatgcctga aaaggcgtat
     5581 caggaagtat ccgtcgccat tcagtgtggt gatgagtcgt tttatgcccg tgccaggaaa
     5641 actacagaca gcggatttga agcgtttctt ggtgtggaaa atgccgggga cgatgaagca
     5701 gaagtcgaaa atgatgattc cgcttttgat cttctctgta aaattcgcac aggagaaaca
     5761 gtgacgacaa aagaagtggt tgtgaatgag aagaaaacaa cgccaccgcc attattcacc
     5821 gaagccactt tacttgccgc gcttgttcgt gtcgcagatt ttgtcactga tccagtgatt
     5881 aaaaagttac tgaaggataa agatcgggat aaaaaagacg aacatggcgg tattggtacg
     5941 ccagctacgc gggcttccat attggaaaca ctgaaaaaac ggaactatat caccctggaa
     6001 aaaggaaaac ttattccgac agataccggg tatgcgctta ttgatgctct gccggatata
     6061 gctgttaatc cagatatgac ggcattatgg gcggaaaaac agacactcat tgaaaacgga
     6121 gaaatgacca tcgaacagtt cgttgacgaa ctgtacaatg atctgatacc gatgatcagt
     6181 aatgcgaaca gtgctgaaat aaaagtttcc cccagcgcgc cgtctggtca gtcacaacgc
     6241 ctgtcctctc cttgtccttc ctgtggtaaa cagattgtaa tcagaccaaa aggttatttc
     6301 tgtacaggat gtgaatttaa gatatggaaa gatttctgcg gcaaatcatt aaccgataaa
     6361 caaattgaaa cgttaataac aaaaggagtt acaagtgaat tgaaaggttt cattagtcaa
     6421 aaaacaaaca aagaattttc agcaaaagta aaactggttg acaaagcaac cgggaaactg
     6481 ggatttgagt ttacacaaaa aagtaagaaa taaatccagc agtagaaatc aaacatcgtt
     6541 gtagctacta taggacaagg atgttcttca ggaattgtac aatgaaaaca aaacaagact
     6601 ggctctttca gttaagacgt tgctcaacac tcgacacact tgaaaagatt attgaaaaaa
     6661 accaaaacag cctccctcct tctgagcttg agtcgtttaa tgccgccgcc gatcacaggc
     6721 ttgcagaact cacaatgaat aaactctacg ataaaatccc cccatccgtc tggaaatatg
     6781 tatattagtt ctcatctatt aatattagat ttttgatcga cacaaacatc agcaatccct
     6841 atacaccttt catagaatga attgaaccct gtatatagcc tgtctgaaat ggatatctgg
     6901 caggctatct taatagtgtt ataggtgatg tgaatgtttt tccacatgat cactcttttt
     6961 ctgttcttat cactattgat actcctgata aggatattct ccgccagact aataattccg
     7021 gctgtgggcg tgtttctgcc agtatcatca ctctggatgg gatttcatat gctcacacaa
     7081 aatgaatcct gtctggataa catcgcctgt gttgctcccc catttggtca gttcagtacc
     7141 cttataggat ggtttttgat tgcggaatca atattaaccg catgtgctgg cgtatatttt
     7201 ctccgtaaaa ataaaaaacg ctggtcacgt catgatacag tcatgtttct ttttgcaagt
     7261 ggcctggcaa ttttcagtac gtggatgctt gaacaccaat gggtttgaac ttcccttgac
     7321 agttttgttg gttcttatac ttatagactg gattaaatta tgaaagaata cgaaaaagcg
     7381 gctttaatat attccttaaa ggaaagcaat acattagttc ttcggattat actaatctct
     7441 attttagttg tcggggtgat ttcatgcgcg atatacttat ataacttagc gatctcgttg
     7501 ttttattcaa acccgacgtc tgtgcaattc accttttgcg gagtaggctg ttttattgct
     7561 ctattacttc aatggatatc taatgttgat gcaaattaca gagaaagaat tggggatcaa
     7621 ccaggtacaa taaaaaacat tgtacaatat ttatttgcag ccattattac cattagtttc
     7681 attacaatgg cattaacagc catattagtc ttaaaagact cgtccaacat atggctcaac
     7741 attactttta ttgtattatt actgtccatt tttgtagcta ttatttctgt ttggggttga
     7801 ctttttttct taaaaagccc gaaaaccggg cttttttctt aattagtgca tgtcctgtga
     7861 atcgtcacgc tgctgctgcg attcctgatg atcttctctg gcctggacaa attgttttcc
     7921 aagagcatct tctgccattt cacgagtgaa tccgtgatta agcaaatcgg attcggcctt
     7981 ctccctttcg aacttcagtc cttcccctct gaacttgtcc tcaaagcgat caattgcctc
     8041 aagaatcttg ccgtcttccg gcgtgcaatc ccgtccctgt gctttctcaa tttcatgacg
     8101 ctccacgcgt tcagcatttt tcattacagc gtcaatcccc tgagaaatat gttcagactc
     8161 gacgcgataa atgacagtat cgcgcttatt gagatcatgt agctcgcatt caacccggcc
     8221 ccactcaata gcatccttga gagagctgaa atcttttatt tcagcattca gaccttcatg
     8281 tgttgagaaa tagacataat ccttctgttg ttccagttta ttcacatttt caatagccct
     8341 tgtactgaaa tggatacctg taattaccgg aacacgagcc gatgtttggt cccccgttaa
     8401 aacttcagaa ggtgtttttc cagtgatcgc ggcaaattgc tgctccgtaa catccactct
     8461 ggcaactgca tcaccacgct ctaagccatg cttaccagcg accgcaaggt gataaagacc
     8521 accttccccc cgggtaattt ccgcctccac aacgatatcc ccattgcagg aactgaactg
     8581 agaacggtct ttaaccagga agttttcaag cccggagatc atatgctcgt tagctgaaat
     8641 actggcgagt atctcttctg gtgattctct ggacgaatcc cccgcctgtt ccatcactgc
     8701 catattagcg tcattaacag cgtccttaat tcctttaaag gcgatttctt ctcttgttac
     8761 aggtgtgatt aagatatcat cctgattaag cccgtgctcc tgaagcatct tatttttata
     8821 ttcagatgcg tcgtgcaatg actcaaaagt cttaatatct tcactaaact catccttcga
     8881 gaaagaaacc gcatacactg gagtacggta ttcttcatat gaattggcaa ttatttcaaa
     8941 tggcctatca aacgttacta atgccccctc tggataagag gataattcat cggttgagac
     9001 agttttagac ataagcacaa cagtatcaaa accatcacca tttaaacaat tgctttcata
     9061 ttcttctatt gcagaagatt tgctttcctc ataacactga atagccgcat ctttagaatg
     9121 aaagacgata ccttcattca aatcatggaa gcgactaaag tttatacaat aaatttcctg
     9181 tttattatgc acctgcgcag tagcctgatc gtgttgagta gtaagctgct cctgaatcag
     9241 agcctgtgtt ctgtcaatac ctaactcatt cacaattttg caaaattctt ttgcgtcgtt
     9301 ttcattatca aaactggcaa cgtcaaaaat atcatcgctg tctccaggta catgtcccag
     9361 cacttcccaa atctcatttt catcgctatc cagagatttc aaatagccaa attcaccatt
     9421 tgtgccttta ctaagcatct gtgaatccag ggtgtttgcc ctggtaataa caccaggatc
     9481 atatgaagat gtggcctgct ctgcgacctg tgcttgctcg gtggcctgtg cttgctctgt
     9541 ggtctgtgct tgctctgtgg tctgtgcctg ctctgtggtc tgtgcctgct ctgtagcctg
     9601 tgcctgctct gtagcctgtg cctgctctgt agcctgcgcc tgttcggtgg cctgttcctg
     9661 ttcggtggcc tgttccttca atgcatcacc tttctctatt ctggattcgg actcctggct
     9721 attttcctgt gtttccacct gctcaaactt attaccctga agttctgctt ttaattccag
     9781 catcatctgt tgatactgct ccgggcgtaa aataatcttc atgtcctgct ctgcggcaac
     9841 ttcagcgcac atttttttga aatcttcaga gccggtaagt ttgagtacac caccaaactt
     9901 ttccctggaa tactcaagca ttattccgat ctcttctttt gagggatttt tacccgcaac
     9961 gacaaagttc cctttgtcgg taaagacagg cttttccgat tcctgatcgc gataaacaat
    10021 cctggaatcc tgcttatcca tcacaagatc ttttagtttg gtgttaacct ttttcgcctc
    10081 ttctaagcgg cgctgggaat ccaccgcttt ctgaagcgaa agttcgggtt cgtcagcaga
    10141 aatggcgttg atttcatcga agttgagata gcttttgaga cgttcaaggg ctttcatttc
    10201 atctttatcc ttatgccagt cagcatgata ttgacgaata atgtgtcgcc catctgtgtc
    10261 gagttcagaa agacgctcaa gtgtggttag ttttttgtaa acaatcacac ccacggcaat
    10321 atcacgctgt tcacgtggta ttaacttcaa ctcgcgtctc atctctcgca gatcattata
    10381 cagcttgcca cgctcaaacc tgatagtatt tcgtaatgtt ttttcagata aattcagtga
    10441 gttaagacgc tcacgagctt catgatgcgt aaggcgtctg taggttggat agcgcgtata
    10501 tggcgtgttt tctaactgct gtgaataaac ttcaagcaga aaggatttcg catctttcca
    10561 ggcaagatta atatgctttg tcagaaaatc agatgcgttc atattacgat tccccacaga
    10621 aaaccggggg gaaccgtcct ttgctgttct gattttatgc tgcgctggaa taatattaaa
    10681 acgctcggca gcagaagaca gaaacctgac aggatcaata tttctgcgaa tttctgccat
    10741 cgttgtaatt tcgtttttct ctgccgcctc attcagagtc tgaaacatcg tttcacacaa
    10801 aaaagaagag cgttcaagac tttttattcc tgactctgtg aattgtctat cataatcccg
    10861 tcgcacatcc tgaccaggat gttctctttg cggtaattgc tctgccagat cacgctgcga
    10921 aatatctgac aatacactga cagagtcggg tcttgtgaat ccattgattc cgtaaaccat
    10981 accgcgttgg ggcatacgtg acaatccgac tgttgcttca gattgacgga ttctggcaaa
    11041 ctttttagga cacgacttgt aacctccctc tcgtcctgac gtttgctgag aatttctttc
    11101 gttaagtttt tctcttgagt catattcttt tatcctctct tgcaggaaat caatttgttg
    11161 tgaagggctt aatgtcttgt aaagttccct tgttttctcc gcctggttaa aaatatgctt
    11221 aatctcttgg cttgttttat ttaaccaggt attaagtctc ttttctatct ctttgggtgt
    11281 tggtttctca agtgttaatg tccttgtctc aatgtaattc tgacgaaaaa gaggactttt
    11341 taagtttgtg tattttttat ctccaggcaa ttttacagcc agatactcat tggttttacc
    11401 agcatttctt atacgaagtt caccatactc tgcaacaata tctttgaata cagagtaatt
    11461 ttcaattttc tcgttctcta tacgcgaaag caactcacct ttcaattcag agtgatgctc
    11521 tttgtaaaga tcccccttaa ctctacttat aatttttccg taatccgcat ctttacgcgg
    11581 atagtcttta gggctatcaa gattatattt attattaata aattcctgta tagcatcaag
    11641 ctgttcaatt gtatgccctt tggtaacatc tcccactgga ttcaggaact tttcagtaat
    11701 caaatttact ttaggaatta caatatgaat atgtggtttt ctttcaacaa gttcaccagt
    11761 gctattatcc tggatatgac gaattttagg caaatgagct tccgcataaa aagagtattc
    11821 atcaggatga taagcattca tcaataattt tttataatca tcaacaacag cctttaacac
    11881 ttcattcgac acatgacttt catgaaaaga cagagtaatg tgcaaataac gttcctgact
    11941 tttgttttca atagaatcaa taatcttatc tgtagtctgt aaatcaccat caagaacgac
    12001 acgatgatca agttcatcac gcgtgtactg gcgttctgct ttgcgaccat ttatcagata
    12061 atcaacgata ccatcattac caccaccgta tctgacaatc atttagctat ctcctgaagg
    12121 cgatcacgaa taccgattag tccatttaaa acctttttat aaagcgattc tgatataata
    12181 ccttttaaat gatctgaatt taatcggtgc gctatttgat ttatgttgtt tcctgcccaa
    12241 ctcaactgag aaagacaacg tttgtattct ggtatgttac gtttatcaga tgcatatgtg
    12301 tttattttac caatagtaag cagcctgaaa aattcagact tactaatatt aagctctttt
    12361 atagccctat cgaacggagc atattcttct tcggtaagtc tgaatgttac atgaacgttt
    12421 ttgttggttt ttttcttcat atgtcctcaa ggttcgtaga accgcataag aacggctgca
    12481 tcgttcgggg tttcaaaggg gcgtccccct ttggcacacg attgtaacat gaccggaacg
    12541 gtcttgtgta caatcggtat cgtgcctgtg ttttagaaaa ttatttgatt ccatagcatt
    12601 cacacatcaa atgcacacca taaacatagc taatacatag caaaaacaca ccataaaaac
    12661 caatgacata gcatatacat agcaaacaca tagcatatac atagcaaaaa ttgcttgacg
    12721 ttcatgatag aattgcccat catgatttca ctgtcctgga gactgacaaa tgaacaatgg
    12781 agaaaataaa ctacttggtt cgctcttagc tcagaaggtc aagcgaagta aaactggaag
    12841 aataagagag cgttttgctg aaatagaaga agcgcagcaa caaggcataa gaaacattga
    12901 tattgttaat gctcttaatg atgaaggttt tgatctaacg ttaaagacgt ttgaaaacat
    12961 attgcatcgc atacgaaaag aaagggccga gaaaaaagat gtttctcatc ttctttcaaa
    13021 taaagagaaa acgtatcaaa aagcaataac cattgaggac aaaaatagaa aaacgaagca
    13081 agataatgat atacttaatg catatttgcc agtttgcttc aacaatgcaa agatagctca
    13141 acaagctata gataacaatg tatctataga aacaataaaa tcttggaatt gtgctaactt
    13201 tgtacaagtt agcaatactc ttggaaatta tatacgaaat aaaaggtaag aaaaatgtac
    13261 ttaaaactag caattgtaaa taatagcgga aacgtaggga aatcgaccat tggtcaaact
    13321 ttattgaaac ctcgtctgga agggtcagaa attataaaag tagaaacatt aaacactgat
    13381 ggtacaaatg acgagaaatt agcagcaaag gagtttgacg aaattatcaa acgtattgat
    13441 gatagtgaat gcaccatcat tgacgtaggc tcatcaaata ttgagcaatt ccttgtacag
    13501 atgaatgaat atcagggaag tcatgacctt attgattatt tcatcgttcc tgttgtgcga
    13561 gaagcaaaac aacaaataga ctcaattcaa accattacaa cactaatggc tatgggtgtt
    13621 gaacaggatc gttttaaagt aattttcaat cttgctgaaa aggacacccc tattaacaaa
    13681 caatattcag ttttcttagc tgacgacgta tgtaaagaaa ttgtaggtga aaatcctgtt
    13741 gttgtttacc ataacaacat tttcaatatt ttaaataaaa gcggcctaca gtatgatgat
    13801 gtctataatg acaatcgtga ttttcgttca ttaattcgtt cagcgtcttc aaaggaagag
    13861 cggcaagatt tgtcaaattt aagagcagta aaaatgttga tgaatggatt caacagcgat
    13921 cttgatgttg cctttaaaaa cctcaatctc gtctgataca atatggccgg gatgtacccg
    13981 gtcataaaat tggagaaaaa caatgtctcg tagtatctct gaagagttta aagatcaaaa
    14041 aataaacgat cttcttgaag attatattgc tttagaaaaa cagatcgaaa aaacagcaaa
    14101 cttaattatc aacgctatag acgagacacc tgctcgtctg gatgccgttc tgtcagacaa
    14161 agtaaataaa ataatacaaa gcagcattga tattaataaa gatattaata ttgcaaaaag
    14221 cgatataaga caaatatcta atgagtgtca gagcgaaata accaaacaag caataaatac
    14281 tttttctgga atcaaacaaa attttgacca aattgcttcc gaccataaaa aacaactaga
    14341 gatactaact aaatcagcaa aaccattcag tatcaaaaca gccattgcaa tttgtgccct
    14401 gtgcacatta tgcctgtctg cggcattttc tggcgcaacc tggtatgttg cacaacatga
    14461 aaaagaggca agtctgcgct tctatgcaag agcatttctt gatatgaaaa aaataactga
    14521 agagagcatg agaaaattac caaaatcaga ccagcaaaat ataaaactca aactagacga
    14581 aattgattca agaaaaccat aaatatgaaa aggagtccct aatgaccact tttaccgacg
    14641 aggacaaaga actaattaaa gaaatcagag agcgaattgg cagcctggac gtgcgagaca
    14701 atattgagcg ccgggcttat gaaattgctc tggcatcgct ggaagcagag gccgttatgt
    14761 tctgtatatc aggacaaaat gtagattcag aagaacatgt atcaaccagc aaagcggttg
    14821 ttgatgcctg ggttgaagaa tggaatcagg ttgacagaac tcctggcgag ccactgtaca
    14881 aaactgtgcc actctaccat caccccgtat tgccagcgtc aggactggta aacgcagtgc
    14941 gtttctatga acaggtaaag cgtgagaatc cgccagtcga aaccgtagca tggaaagacg
    15001 ctgttgagtg ggttctcgaa gaggcttgcc aggctgtaaa tacaggcatc aaaggatgaa
    15061 cgatatggca accaacaatc gtaaagcaaa gatgctaatt tcccgtgtat acagactttg
    15121 ctaccccagc cagtggttga gagttagcaa tcgccgtgtg gtgttgttct cattttccgg
    15181 aattgccaga gagggagtca aagataagcg tagcgcggtg caaaaccgct ggaaaaacca
    15241 ctgttatctg cgcactaaag gagagtgaga tggcgttaac acaccgcgaa ctctgtcaga
    15301 ttgcgtacaa gttccttaag cgcaacgggt tcaaggtttg ctttcatgac cgctttatag
    15361 ctgtaaccag taccggagaa cagccagatg ctatgggatt cagaaattca gcatcatgct
    15421 tgatagaggc gaagtgttct cgtgctgact tgttggcaga tagaaaaaag cgtttccgta
    15481 aaaatccgtc tcttggaatg ggcgactggc gattctttat tagtgagccg ggaattattt
    15541 cagttgagga tttacctccc ggctggggat tacttcacgt tgttaacgga agagtacgga
    15601 aagtacatgg atggcccaag gggaattgct gttggggtaa tcctgacgat aagccattta
    15661 ctgggaataa gcaggttgaa tgcgattaca tgttatctgc attaaggcgc atggagctaa
    15721 gaggacacct taatgaaata tatgacggtg taattgttaa taagaaagaa ggaaacgcgg
    15781 catgacaact ttaaccgaca aagaaatgat taaagaaatc aaagagcgca taggcagcct
    15841 ggacgtccga gacaatattg agcgccgggc ttatgaaatt gctctggcat cactggaagc
    15901 agaagcgcca aatttgcctg gtggtttcac aattgaagaa gcaaaagaat tacacgaaaa
    15961 tctggtaaaa agtcacgtaa gcaaggcttt aagtggcgaa aaaatgaaaa aagaaaatcg
    16021 tgatgccgat ttacgctgga ttcatggcgt aatagttcag gctgcgtggt ttgtgaaagc
    16081 atcactaggg cagaacgcat agtgcgtacc tgcttttctc ctggcaacgg tggatcttcc
    16141 gcttcctcgt cgctcgctcg ctatgctcgg tcgctggact gcggcgagcg gttagctatc
    16201 aaaaaaaatc cccgcacaac gcggggatag ttttatttat atgcaagttc atgacgtgcc
    16261 gcctgagcca gaaaatggct acgatctttg tatacgccac cactttctct cacatatcca
    16321 tcaatacgac gaatcaatac atcaggcaat gaaatattaa tacgttgttg tttgccctca
    16381 atttctgaca aatcaacatc aattacaaac cagctatcac agtggttata atttgggttg
    16441 gcggaataag tcaaacaccc ttcatcatga atatcatcaa cagaatgagc accgcttatt
    16501 accatctctt ccacgattgc caatatcgct tcacgcgcca ttgcgggtat ttctgcctga
    16561 gaatcagcag cagaaacaca tccaaaatca aagcaatcaa aaaccggaac ggtgataccg
    16621 tatgctgtat gatcatcttt cggtgtttcg acaccaacag aaaagaacat ggctacctcc
    16681 aaagtcggcg gggattaaat ccccgccatt tttttgatcg atctgacagt acctagcggc
    16741 aagtcctttt taggatgagg aacaggaaaa gtttttcctg ttattggcga ccaccatatc
    16801 tggtgactgc ttgccttatg ccgtttcaac tcgcaaccag cagctatcag ttctttcaac
    16861 aggtcagcag atttcatatg tcctccctaa cctgaggata attatacaca cgcatacaca
    16921 caaaggcaaa ttatttcatt cgtatgactt atgaaccaca ctgtaaagac agctcaatct
    16981 ttacagtgta agtcatttat ccagttttat cgctgtgtat gtgatacata gaaaataata
    17041 tagtatttta ctatatgata tctgattgac acttttaact gcacatctca tcatttacat
    17101 cgtaaagaca aacatagatt tacaatgtaa agctatgtaa ttaaacactc cgtgtcccaa
    17161 ataaggaaag aaaatgactc aactaatccc agaaaagata ctggaaatca tagatgatca
    17221 tgatcgtgca gaaaaaaagc aacgcaacaa aatcggtttc atttatttat gtctctgttt
    17281 agcaataatt ggtgtggccg cgtatacctt tatatcaacg tttagcatta atgtggtaac
    17341 aatcatcata atgcttttcg gtgtgtttat gattgtgatt tttaagagct atttagactc
    17401 atggagtggg ataattctta gcagtgacca catattgtcc atactcgata aaaccaaaga
    17461 ttacccagaa attaaacgta tagttattaa tcgtctgctc tccggctcaa tactcacggg
    17521 taaagatgaa gagtacatat acagccaact ggaaaaggcc caacaaagca acgaacgtga
    17581 aaagagattg caagcaatta aagagtatac atcgtaatac aacgcattac gtcgaaatac
    17641 cctggatcat cgaagccaca tacccctaag cgcagcgcaa ccgccggaaa acgcaccaca
    17701 ctgtaaagac aataaaatct ttacaacgta aagctaacta tgtaatacaa cgcgctacac
    17761 aataagaaag ggagagcatg acactctccc catatatgac tcaaactaaa gcattatccc
    17821 ggttatgcgc ccaccaaatg atttcgctaa taatccatgc ttctatcgcg ggtgttttta
    17881 caggttcccc atttacaatg cggtttgcaa gctctatcat ttcacatact gacatttgag
    17941 aatctccaaa gatgatctgt catttggtaa caggctgccc cacagcctgt taccaacccc
    18001 aaattaatat ttgctgatta ctttaccctc cttaatcatt tttattagtt cctgttcaga
    18061 atattctttt ccgtgttcca atgtggaata tatattgcca atagtccata ccccacactt
    18121 tttaatttct gcatttagcc aggattcatg cagaataaac aacggttcgc aatcatttcc
    18181 tttttcataa acataaatag attcggtatc atttccagaa tcagaagtac caacgacttt
    18241 ttctatatcg aaatgttttt ttagaaaagt tgtgaaatgc attttcatgc tcctgccgct
    18301 gagcggcttt ggtggttggg gaccatcccc tcccaatgtg tttataatag gtcagaactg
    18361 acctattatc aagtattttt ccctccattc ctcaaaaaaa acaccatcaa atacagacag
    18421 ttacattcat gtaatgcccg acagggcatg gaaggggcga aagaaaatac cagggagcag
    18481 cggggccaca tcgccccgaa gcgcggcgca gccgctgacg aacataccag gatgcacagg
    18541 gccatccctt cgccctgcaa agccagaaca gaccaacagg ccatgatcat gctgatttgc
    18601 gccgcagaat gccgcagtta gcgcgagcga cagcgagttt acgccgtcct ggtgcattgc
    18661 agcagggcgg ggcgctgtac tgcgcgtgtg agcgtcagcg agctacgggc gcaattgctc
    18721 attgttcaat gcaactgggg ctattaagtc cagccataaa ttcagttatg gtttttgtag
    18781 cttattccgt gatttcgtca tacgttaatt ctattttcat cttaatattc cttaattact
    18841 tccagaatca gaattctttt tattcctttt acaaagtaca taatcagggt gttctccagc
    18901 taaaagcaga agaaatttaa actctactgg tgtaagtgct gtaccgcttg cagttccgac
    18961 aggttcttct ttgcgacgcc aggtacgcgg actcatgcta aatatttcgg cacattcttt
    19021 ctgtgtcagg ccaatttttt gccgcagacg tttaatgttt tctggtgtgt tttcatttgg
    19081 cattttttcc ctcactcatt tcctgaatca tcatagaaac aatttcttta tcattctctc
    19141 ttaatccgtc gctggcaaag tcgatagtgt cgaatgcctt ctcatgaaaa acaagatcgg
    19201 caacagtttt caccgttgct ttcgtttttc ctaaagtcgc agacttagaa aaagttttta
    19261 ctcgcttcac cagatgaaac gtatcacctt ctttattcag ataatattgt ctgtcacctt
    19321 ttcttatctt catattgaga tagtctcccc ttttaacagt aaaggggcat atagcccctt
    19381 tcttttaact ttttccggta atcaaatcga catcttcctg ataaagctcc ccaagaaccg
    19441 gaacaacgcc ttttttataa tcacggatat tatggcagtc tgtaaaaatg acgacataag
    19501 cctcgcctgt tttttcatgt ttaaggcaaa ttgtgcaaag cgtcacgcgc acaacagaaa
    19561 acacatgacc agttgtagag acgatagcag gaaaagtaga ttgtttcatg tttaactcct
    19621 gccgctgagc ggctttggcg attggggacc atcccctctc aatgcattaa taataggtca
    19681 caaatgacct attatcaagt attttctaga cgagctttat tgaaaaatca ttttcaataa
    19741 attcatctaa catctttaat ataccagctt tatttacgaa atcatcctcc ataatttcga
    19801 tacttgctga tatttcacat gtaaactcaa tgctcctgtc aaatcccgca atcccagcta
    19861 atgcagacag catatgataa ttatcaatat ttatattacc aataagaact ttcatttatc
    19921 ctcctgatat ggggggaatc ccccccatat taaaaattac aatctggttg caagtccggt
    19981 ttgttcatta aataaacatt caagctgatc acaataaata ttatcaaatt ttgatatttc
    20041 ttttactgta gctccacgga cacgggaaaa tgtcaccagg tatgtatcag agaaggttaa
    20101 tttgatttta accaaattaa ttcccttcat tgcaaaattt gaaggtaaac gaaagcaaag
    20161 accagactca ccattttcat caaaacaggc aaagttcttt gcgcctgtca tagcaataaa
    20221 gcggtttcca ccaagctgat taagaatttc agtagcaaca aatttggcgt ggttttccat
    20281 ttttaagctc ctgccgctga gcggctttgg tgattgggga ccatcccctc tcgatgtgtt
    20341 tataataggt cagaactgac ctattatcaa gtattttttc ctcctttctt taaaataaat
    20401 atcgttaaat acaaatattt acattcatgc aatgcccggc agggcataga aggggcgaaa
    20461 gaaaatacca gggagcagcg gggccacatc gccccgaagc gcggcgcagc cgctgacgaa
    20521 cataccagga tgcacagggc catcccttcg ccctgcaaag ccaggacaga ccaacaggcc
    20581 atgataatgc tgatttgcgc cgcagaatgc cgcagttagc gcgagcgcca gcgagtttac
    20641 gccgtcctgg tgcattgcag cagggcgggg cgctgtactg cgcgtgtgag cgtcagcgag
    20701 ctacgggcgc aacattacat tgctgcattc gccaagcatc ttccacgccc tgaagggcgt
    20761 gggttttacg ctcaattata gttgccacca catagtattc cttatcgtga ttacttcctg
    20821 tttatatcac cactgacagt ggttacgtca ccagaaatat ctccacaagt gatatcaccg
    20881 ctgacagtgg ttatatcgcc agtaacctga cgacaatcga tatcaccact tacagtttca
    20941 acgtctccag cattcccatg aataataaca tcagcatttt cagttactat tttattcaca
    21001 ttgccatgta tttctatctt aatactccgg cctttaaaaa ccacagtttt attgccaatt
    21061 ttaatgcaat catcagtgac aataagattg tcactatttt ctactgtaac atgctctttt
    21121 ccatcaattg tgattttatt tccggcgaca attaaacctt taccaacaac ataaatactt
    21181 ttcatggttg acctttttaa catggttgca ggggataccc cctgcaacta ttttcttagt
    21241 agtatgatgt gaactcgtgt ttttcttccg gtgatccttt atatgctgtt tcgaattcct
    21301 caatttcaat tgctggcgta ctgtaataat cacgcactcg ccgttttaat ggctcaccac
    21361 agaaatcatt aagtaatggg gtcttatatc cgctcattga atgagtccga tgaactgaag
    21421 cgcgaatctc ctgaacagtt acggtttttt tgccatgaac agaaataacc tggtagaaat
    21481 taacgttcgt ttgctcatat ccccaggaag atacaaacac atcgccaaca gaaacagtac
    21541 cgttattaaa agttaatgtt ttcattttta tctcctgccg ctgagcggct ctggtgattg
    21601 gggaccatcc cctcccgatg tgtttataat aggtcagaac tgacctatta tcaagtgttt
    21661 tttcctcttt cctttaaaat aaataccatc aaatacagat agttacactc atataatgcc
    21721 cggcagggca tagaaggggc gaaagaaaat accagggtgc agcggggcca catcgccccg
    21781 aagcgcggcg cagccgctga cgaacatacc aggatgcaca gggccatccc ttcaccctgc
    21841 aaagcccaac ggactgacag gccatgatca tgctgatttg cgccgcagaa tgccgcagtt
    21901 agcgcgagcg ccagcgagtt tacgccgtcc tggtgcattg cagcagggcg gggcgctgta
    21961 ctgcgcgtgt gagcctcagc gagctacggg cgcaacaaca caccaggcga aatcacatcc
    22021 ttaaaagtta ccctgtaaca tacatacaat gtaaagcaca aacgataatt acaacgtaaa
    22081 gacacaaaca tctttacaac gtaatcatga tgaatacaat gtaaagacaa ataaaccttt
    22141 acactgtata tccgaggttt ctatgggaag agcattactt gtcgcatcag ataaaggcgg
    22201 tgtaggaaaa agcaccacag caacaaacct ggcctcttat ctggtaaata attcacgaac
    22261 ggtcatcatt ctgaagaccg ataaaaacaa tgatattctt agctggaacg aaaaaagaaa
    22321 gcagaatggc ttattaccgg ttcctgttta tgaagagtat ggcgatgtat cagaagtcat
    22381 taagcgcctg aaaaaaatat gtgaagtgct gatcattgac tgtccagggc atgacagcaa
    22441 ggaatttcgc agtgccctaa ctgtagctga cattctgctt actctcgtta agccgtcttc
    22501 agatttcgaa gcagaaacgc tgactcatgt aacagaaaaa gttcgcacag ctcaacagat
    22561 caatccagac ctgcaaccct gggtactttt cacgagaatt aacacgacaa aaccacgcca
    22621 cagaaaagca gcgattgatc tcgacaagtt actccgggag aacccggtgt ggatacagcc
    22681 acttcgtaca cgtatttcag atttagatat ttttgaagcg gcctgtaatg aaggcgctgg
    22741 cgttcatgat gtacgtcgcg catccagcct ttctacagct aaagcacaaa tagagctttt
    22801 ggcgcaagag ttaggcatca atccctgagt taatggatgt aatacgatag ctttacatca
    22861 ttagctttac aatgtaaggt taatgtaaca cgcgaaaggt gatataatgg ctcttgactt
    22921 gaaaactccg gtaataccag gacaaaaaac agaacaaacc aatgctgaca cagcccgatt
    22981 catcaatgaa gctacccgca aaaaatcggg agcaactaaa gtgaccaatg tccggcttgg
    23041 ggatgtttac gaagatattc tggaacggga agcactgcga acaggccaga caaaaacatc
    23101 aataatgaaa gcggctcttg cagcttacga acacggcctg gacgagaacg gaaaaaatca
    23161 ctggattcta cagtcagcca ggctgaaatg ataaagccct tcggggcttt atcccttacg
    23221 ttttaattgt ttcttctcgc tggctttctt acgggcatcg agaaccagtt gcgcataagt
    23281 tgcgtgtgct ttttttactg taccagcagg tttcccgtaa aggtcgtaac gtgttgcgcc
    23341 tggtacagta caattctgaa gatattgcca ccggaacgtc atcacctgaa ccgcacaatt
    23401 ccactcttca atcgtcagat ccacatccgg gttatccgcc aggtatttct caacgtcctg
    23461 gagaatcccg cttttcaggg gcaagttctt tttttcgtct gtccatagtt caggaaaaac
    23521 agcacgaact ttattgaaac acttttcaaa atattctttc ggatattttg ggggaaaagt
    23581 gatttgtttt ttcaaatacc agggctgagg ctgcttttta cgtgttttct ctgctacagc
    23641 atctttcttc tgtactttct tgttttcatt aactgctgat ttttgtactt cctgcggctt
    23701 ttcattcacc acaggatttt ctggcatgac cagaacgcgg cgttttttga ccacaatcac
    23761 gggtgttttt tttggctgca tactcgcctc aataattgct gtcatattga ctaattatac
    23821 cattttcagc agttaatatc ctgaaaatac atggaaaaag ggggtatccg tacagaatac
    23881 cccctttgta aaggcgctta atgccagaac cacatccccc ccaaaaaggc gggctttcgc
    23941 ccgcctccgg gttgctactt accgttggat tcgtaagcca gacttgccgt aacctccctg
    24001 tttccgtctt tcagccggac ctcgcacaaa cgattccggg tcagatacgt gaatattaac
    24061 aatgtgcagc acacgattaa taaacaccag gtcagggcgt ttttcggctg tttcatggcc
    24121 ttcttctcct tgcgtaacgc gcggtaagag gctatcctga tgttgttcaa gcattgggat
    24181 cgcctcgtgg gttaatgaaa aattaactac ggggctttct tctttctgcc gcacaacaag
    24241 atacaaacca ccttttcgcc atgaggcaga aagcctcaag cgccaacagc attatatatt
    24301 gaccaggaat taaattccca gctttcggcg tggactatac agtgtgtgat tcaccacgat
    24361 gaatcctttg ttgatccact gtgttacctg cgcaggttga actccggtca gcctggcgaa
    24421 cgatgcctga ttcccccgat agaacttgtt gatgtattca atcaaaggca ttttttaatt
    24481 ctccgaaaca acgcaaaatc atatagtaat ttactatatg atttttattt cgcaagtgat
    24541 taactcatcg gatttctttg tagttaacga aacgttaaat ttagtttgtg cctggaatgg
    24601 cacgcaagaa gcacactagc attattattt tgatcaaaac gctatttccc cccgtcattg
    24661 ggggctttct tttttgatgc cgcgccagcg gcatggaagg cggcactccg ttgttacata
    24721 tgatactgga gtaaaaccgc cgaagcccgg cgtaagccgg tactgattga taggtttcac
    24781 cttacccatc tccatcctgc taagccatac ccgctttcag ctatgaaata gcttttgtgc
    24841 gcggtcggag tggtcccgac aagggtttac ccgcagtcgg ggcgtatctc cgcgttagcg
    24901 ggccgtcagg gccgcttacg agcgtgtact cggtacttcc agccagaaga ctgacagcca
    24961 tgtgatttct tagttacaac atccattatt gaaagcgatg ttgttcccgc cctttgggcg
    25021 ggggcggcgg cgcttttcag tgatgggttg ggcgctgtgg ctgagtattt gcagcgtttt
    25081 tttgtaggag ggttggaggg gctttgtttt tcattaggca gaagtccata tgcccgccgc
    25141 gaagcggtgg gaggtacttt tatattctga gcggcgcggc gttagccgct gcaagcgaag
    25201 gcatttttgt gattatccac agttgtttca aagataaata ttttccctgc ggcgaagcaa
    25261 cgcaggggat taaagaacag gggttaagaa tatattgcgg gtttgatgtt ctatgtttgc
    25321 tgctttctga agttattcct ttgcgggttt ttgtggataa ccgaaggcgt ttttactccg
    25381 ataccctatt gcggccatca aaaaactatc agagcgggac aaaatgaaaa acggtcgtca
    25441 aatatgagga atttcatgaa atgcaggcaa cacgaaaagc cccgaagggg ctgaagagag
    25501 tgccgattgt atcaggcagc taaactagtg gggtggcgaa gctgtcagag ccagttcaag
    25561 ctgacgtaga tctctggcta ccagttgctc taatctttct ttagtgcacc agtacgcttc
    25621 gtccggcggc atacgcttca gaataaaccg cgcaatttcg tttcgctgtt catcatacgg
    25681 cagttttgcc aggcgattag cacgtttgcg ctccgctgct ttcttacgtc gggacttgat
    25741 ggcatcgaga gaacgctgcg cataccagcg tttacgagcc gagtgaacag agatttcttc
    25801 gccctcgcgg ataacgcctt ctttaatcaa ttgcagacgg atttcacttt ctgcaaggcg
    25861 cttacgttgc tgttcctgaa gtttcaccag atcaactccc agcattttcc agccagtttc
    25921 ggtgatccag acgtatttcg gcagtcgctg gcgggattca cgatcccata tcgtcttttc
    25981 tgacgttccc aacgtgccaa aggaaacctg ctctgccagc agacgggaaa ggcgcgatac
    26041 tgtgactgcg gtttcaggaa tcacgtctcc cttactgtct tttgggctta tttcttctgc
    26101 caggcgggag acagacatgc cgacagtgtg caatccacga tcacaaaaac tcacaagtac
    26161 aacccatatt gcgtcaagca gccgctgttt ctccggtcgg aatttatatt tgcgaccgac
    26221 actctgacgt ttcagtacat aaaatggatg caacgacatg tgcattctga gtgtgttctg
    26281 accagtgacc gggtcttttt taacgagacg attgtaagcg tggcccaact gtccgcccag
    26341 cgccttatag ttgtcgggac ggaaccaggc tggattctca cactttggct tagtggaatg
    26401 ttcaccccgg cgacgttttg ttgttccgcc tttgttttcc tggaggacca ggaatgagct
    26461 ttcaataccc gcttcgtagt cctgccagaa acggacctgc tcttccggtg atagttcaga
    26521 ccagtgacgt ttgctaatca cagcaagctg cacttagctt gcactgtaag agttgatatt
    26581 tccttctcat ggaattaaac tccatttcag gtaacaagca tacctgaaat aaataagctc
    26641 aaggctctgc cttgatgtca gcccccgcta atcttcgctg cctggaaaac acgagattac
    26701 gggggttttc tttatctgaa atttacgttc ttgaacaaaa tttcagcacc tcgttttctg
    26761 catttacaaa tcgcggaaaa cttgcctgca aatttagcag catgggcgca atcgatcaac
    26821 gatgttcaag cctggctcgt ttcctttttg attcagcaca catctgtgac tgcttcaaaa
    26881 tcgttttcag aacagctact gaagcccctt ctttactgac gttccccata caaaacctta
    26941 caaaatcaga aattcagaat tttgtatatt caaaaaagtt tttttgactg catacaccca
    27001 ctcacacgat cgaataaacc acacaaacag tattatctag atttttagat cgtacatcat
    27061 ttaacaaaca gaatattatt ctgtttttta gatgttatcc agatcattag atcgctcttg
    27121 tggcattgac aggttttaaa tgtcgcacac acaatactat ccagatgatt gtaaaaagct
    27181 cgttcatcgc gttttttgtg ctcattgcct ggaaaatgag cactctttga cgcccgttag
    27241 aacgcttgtc atctcatgct ctttaacaac cccggacagc ggtcattgcc taaagccctg
    27301 gcataaggag gttattattc gtgcatttca agcaccgctg gcatctgtca gcaacgggct
    27361 acgtaacaga gtgacgtgcc gcgccatcta cacaggtaac gactctttat ccgcaaatat
    27421 cattctgcat acttaaaccc ccttatttgg tgaactcgcg ttgagttaat ctcactcact
    27481 ctctccctga gcaagtcgta caggctgcaa cgcagaagta caccagattt gccagtctcc
    27541 actccaggta agggggttta gctatgcatg atgatgaaca atcagataaa gagcctgtag
    27601 tgagtggctg caacttttca taattagctt atgacgctgt attccgggga tgtttctatt
    27661 tcagacaaac aaccgggaga aaatatggcg cgtaagttaa aaattaatcc tgtcattcct
    27721 gaatgtgtgg cagatttgaa aggatatcca ctctatatca tcgtggctta ttggggatta
    27781 agaaataata aaacgctcac aacaacggat gttagccgta atttcctgat tacacagcaa
    27841 caatcttatg atgtgcttac ctacatttac caggaagcac agaagcagat aacagcaact
    27901 aaacgaacac tatttaacga gcacaaaaga agaattagcg cgttcaggat tcttgatatt
    27961 gacaaaggca tattgcgcac acccaaaaaa gagattgcat atgccagcta cgacaatata
    28021 ccaactgtca caatgaaaag tacccgttgt gagatccagg atagttttac agaactgcgc
    28081 cgctggatgt gttcaagaaa gacaggtgat cgagtggagg tatttttgaa tgcctaagta
    28141 ccaaataaac gcaaccatca aaaaaccagg tggtggcccc gtgaaatgga ctcattacag
    28201 cgacttccct atgaccgctg aagaatgcag aaaaaacttc tcaaaagaaa aagaagcagg
    28261 aaagtgtttt tctgttgatg ttcatatttc agatttcatt tgcaaagaaa tacatccaca
    28321 gtgatgaatt gggagaggat taatcatgat tgacgctata attacgccaa tagttacatc
    28381 tattccgtta ctcttattaa ttttagttgc gctgatattc gttaaatctg ccgtcaaaat
    28441 cgtgccacaa ggtaatgcct ggacagtgga acgctttggt aaatataccc atacgctttc
    28501 ccccggtctt cacttcctga tcccgtttat ggaccgcata ggtcaacgga tcaacatgat
    28561 ggaaaccgtc ctggatattc ctaaacagga agttatttcg aaagacaatg caaacgtaac
    28621 tatcgatgct gtttgttttg tccaggtcat tgatgcagcg aaggcagctt atgaagtcga
    28681 taatcttgca tcagctattt caaatcttgt tatgaccaat atccgaactg tcgttggtgg
    28741 aatgaatctc gacgatatgc tttctcaacg tgacagcatc aattctaaac tgttaacggt
    28801 tgtcgattat gcgactgacc cgtggggaat taaggtcaca cgtattgaaa ttcgggatgt
    28861 taaaccacca aaagaactga ctgaagcgat gaacgcgcaa atgaaagcgg aacgaactaa
    28921 gcgtgcccgg attcttgaag cggaaggtat acgccagtca gaaattctga aggcagaagg
    28981 ggaaaaacag tctcaaatac tgaaagcgga aggggaacgg caatcagcat ttcttcagtc
    29041 tgaagcacgc gaacgtcagg cagaagcgga agctcgcgca acaaaactgg tgtcggatgc
    29101 aatcgctgaa ggtgatgttc agtctgttaa ttactttatt gcgcagaaat acactgaagc
    29161 actccaggca attggcacag catcaaacag taaactggtt atgatgccgc ttgattcaag
    29221 tagcctggtg agttcggttg caggtatcag tgaactgcta aaaaacgtat cacaggatac
    29281 tcccaaagtt gatatgaaac aggctcaaca atatttgtct taaaaaagat agcggacggt
    29341 gaaaatattg ttttaatcac cgtccttata ttcatattca cgaatgagca aatcattaaa
    29401 atgaaaactt atgggttcat ccttcttatt ttacatataa tccctatggg ggcatggagc
    29461 tttcttcttt ttattacaaa agatgagaac aaaggagaaa aaatactaaa ccacatcgca
    29521 tcaatatttc cattatggct gaacttcgga ggggtgatga tagcgatggc tctgctgccc
    29581 ctgttaatat ggagttttaa tggcatattc ttcggcttct ttctgctaat ttatgcattt
    29641 ggcgtttata actaccttca tcttctttat tcaatttctc ccttttatca tggagattag
    29701 ccatgttatg gtttacactg tttcttctgt gtattgcact tgaaattata accggaacag
    29761 gatggttact attaatcagt cttggtgcat tatcaagtgc cattgttgac tttttccttc
    29821 ctatatcaca agaagcaaat atatgcttct ttgcgtcaat aagcatactg acgtcgataa
    29881 ttaagttcgt ctatgacaaa aaacataaga aattagatac ccccctggtg aacacaggac
    29941 atacacgttt taaaggaaaa gaatttactc tcagtgacga tattgtgaac ggcaaggggc
    30001 aattacttat tggtgataca ttctggcctg ttgagacgtt acacgatgaa aactaccctg
    30061 cgggaacaag agttattgtt acagacatgc aaggaataac tcttaaagta atgaccatcg
    30121 aagacaagag tgaaaacaag gaataaatca tgcatctttc gttgttaatt ccgcttacag
    30181 gagcagcgat gaatgcacta tgtattttta ttatcagact tctggataag gattttattg
    30241 aagtctataa aaaaacgcta aaaaaaatta ctgcattaca tattttattg atggtgttaa
    30301 gtgtcacagg aatagtatga ggacaattct atgcgaaacg caaatgaagg aatttctctt
    30361 gcagctattg tagctaaaga aacaacaaca ggtaaatgga atggtactgg tgggggtatt
    30421 ggtttaggta ctggtggtat tggcttattc atcggaggtg tttctggttc taaacaagag
    30481 cagacacaaa gggcaaaaaa ctttgaatcg cctaaagagg aagaatacag tctattaaat
    30541 gtatacggtt cgataataaa agttctcgtt tttggcgtgc tatttggttt atctgcccgt
    30601 ttatttacat ttttatcaga cactggttct gattttgctg aaccagtaac aaccaccaca
    30661 gccacaggaa agattcaatc tattctgggt ggcatggcag aaatggtaag cattttaggc
    30721 accgttgtcc cttttttagt aattatcata gcaatgatct ggtttctgtt tttcagcagc
    30781 aaacgagaaa aagaagagtt cacacgagtt gaacgtgaag ctgctaaaac aaaactccgt
    30841 atagatgtct atcaccgttt acgttacgtt gaaagcgatc atgtcgtttt tgacccgatt
    30901 acaggccggg aggttccggc agaacgggcg tgtattaata aacttattga ggcacttgct
    30961 gatgaaagca acaacgtctc atgaagaagg tgacagaacc ctgaaggata cgatgaaatg
    31021 tacagaaaaa aacatcacct aataaaaata tttttattaa aaatggtgtg caatgttttt
    31081 tctttcctgc tgggtgcttt catactttca gcaccgtttg tcttatatac attaaccggt
    31141 tcagttctga atgccgttat tcatttcatc ttttctttgc ctttagccac catattactg
    31201 gtttatgctt attcaggctt tgaagaaagc atttatttat tcatggcata cacatatgac
    31261 tcaagcaaaa gctaatctga gaaaacttcg ccgtgcacgt tatgtccccc ctcgaacagt
    31321 aaagaaaagc atagcgaata cagaacgtgt cgtatcaaaa gcaattaccg gctgtggtgt
    31381 cttccgtgat ataccacaag taaaaatcaa tctcatcgaa acaaggaaaa ttttacaaat
    31441 cgaactggct ttatccattg ctaacttatc tgaggcgaat ccaattgaga tacgaaaaaa
    31501 aatcaaaagc attgaccgac aattatcttc aacctcaaaa atcagaacta cattatgaaa
    31561 aaaaacgacg atttaatcac tttaccatct cataacagcc acgctctcga ttacatcatt
    31621 aaaaaagcgt ttacaccacg taaaaccaaa acatcgacag cgacccacaa cgtttatagt
    31681 tacaataaag aagaatccac attaaatttc caaaaaattg gagaagcaat ttttttcggc
    31741 acagacctgg taattaagct gaagccaaat attagtgcct ctggtgaact cttcatctgc
    31801 cagaaggact aagctatgaa cattgtttca gaatttcttg agaaagtaac aaccattgtt
    31861 gaatccacag cggcgacgaa cgccgctaag gtcgcacagg caatatctcc tacatttttt
    31921 gcggctatag ccttatacgt tatttatcta atatatgaaa tcacgtatgc ccaacgtgac
    31981 atccttatga acgaggtgac gaagaatatc ggtgcattcg ccctggttgg tgcattcact
    32041 tattcagcgc cttattacag ccagtttgtt attccttttg tcatgcacgc tggctccgac
    32101 ctttctgctg ctgttactgg aggttcagga actgcaacca gtgttgataa tttgtggaac
    32161 gctctatcta cgaatttaaa caacttcctt aatacaagta tgagtattta tggaaagttc
    32221 caaattgctg agaaaatggg ggtttatcta gtatggggga ttggctatat cggcggaatg
    32281 cttctcatct attacactac tgttttcttg acactatcaa ctttcatggt tggaattctt
    32341 ctttccgctg gcattttatt catttgtttc gctctatttt catcgaccag aaatatgttt
    32401 actgcatggg tcggcagttg tctcaactat atactgttaa atttattcta tagcatatca
    32461 tttagtttct taattagttt cgttgaatca gttgtccctg ttaatggaga tataaaacta
    32521 tctattgtag tttacttttt ccttattact attatttcca tattccttat agaacaagtt
    32581 ggcacactct gttctacatt aacaggtggg gtaggtataa atggccttac atcagccgct
    32641 aatggctttg gaggtaaggt tgcatctggt tttatgcgag catcaggact ccgatctttc
    32701 actaatggat ttgccagcaa aatgccaaat ccaatcttta atgcaggaag tcgttctgca
    32761 tcagcattag ttcagggatt aaaccgtgga agtaaactta aagcggggtg attaacatga
    32821 aagataaagt attatcattt ctctttgctg gaataattac cgtaacatca ccatcaatct
    32881 ttgcatctgg tattccagta gtagacgtta cagcgatagc taaaacagtt gaagaagggc
    32941 taaatcgtgc cgctgaagcg gcaagacagc ttgagcaact caagcaacaa tatgaacaga
    33001 ccataagata cgctgaagaa cagaagaaaa gactcgaagg cttcactgat ttcagcaatg
    33061 gctttgatag cgcatccagc tatatgaagg attctctatc aacaataaca aatagtgcaa
    33121 aatcagatct tagctctttg cgatcgcaat atgacttatc aagcaacatt gcagagacgc
    33181 aacaaaaata tgatgcaatc ctggctaaga tcaaattcta tgaaaatttc aacaatgaaa
    33241 tgcaggaaag ggctaagaga ttaaccacgt tacagaagga gttcgcgtca gcagatactc
    33301 cgcaaaaaaa agctgactta tctaaccaat tgaatacaga aaaattgaca atggagctac
    33361 aattgaagca atatgatatt gcagagagac agctaatcgc gtctgaaaat gcaagacaag
    33421 aggctgttag tcgagaaaag tttaaattaa tgatgcaata ggtgttcgaa tgaaaaaatt
    33481 cataagcact ttaactatct tgtcatgctt ccttttagct gcttgtgaag acaaagttta
    33541 tgatgtcagt tactacgctg aacatcttga acaagcccaa gatgttgtcg aaaaatgcag
    33601 caaaggggat atgtctggtc aaaactgcga aaatgcgcgt gaagccattc aaaaagagca
    33661 atcgggtaaa gcatttaaaa atatgatgca ataatccttc attaaaaaca gctcgcaaag
    33721 cgggcttttt ttggctgtac gcagtgacca gttgataaat agttctaatg ttcgtgctgc
    33781 attagaacaa cgcacaaaaa gaagagtaca agaagacagt gcgggatcta atggaacgtt
    33841 tacaatagaa tcaccttccc tatagcaagg tgattctatt taaaagaata cccgcctcgt
    33901 gcgggtttta tcttgcttaa agatctatga aacctccggc ttcgggtatt aaactataac
    33961 ttgctttggc aaatattgtt tcattgactt catggaatct tattttctcc gcctgttcat
    34021 atgttacagg gaagaacacg ccccctggct cattaaacat cataaaatca ccttgcattg
    34081 cgttacaatg acaacaatga ttcgcgtaat agttcatttt tgctgttttg ctatgggatg
    34141 gataatataa ttttgaatac tcattaatcc ttgagagagc agaggttgaa attatttcaa
    34201 ttttcgttaa atcagtccac catactctac tggttaacca ccgataaatc atatttttct
    34261 ttgaatcaaa atactccata cccttagggg aggatgtttc ataccattca tctaatatac
    34321 aatcttccca ttcggcagga tcaactcccc aaataacgtc tctatactta taccaacgag
    34381 gtaaaaaaat accaaacaca ggagttgttt tcttacagcg ccaacaagac tggtaacttt
    34441 ccgcaatata aaaacgttgc gaaaaaacat tgtaatcatg ttcatttaat tcttttatcc
    34501 accgaataaa ataaattgga ttttttccct gtggaacaaa ccatttccgt tgctcttggt
    34561 cccattgcgc ccctttttgt ttagccaaat ccttttcttc aaacggaaca tttaaataaa
    34621 accgcgccat agccaactta actccagtat tctgttctga tgatgcacct ggatagatat
    34681 caaaactaaa caaagagtgc aattccgcct ctaatggctc attcataccc gcctcgtgcg
    34741 ggttttcttt tgcctgaaat atggaggaac tccatgaaat ccatcatttt atcgatggtt
    34801 gccgccaccg cattactgtc aggctgcgcg gatagcaaaa cacaaccagt acctgagtca
    34861 ccgttaacct caaatgacca ccagataacg ttgaaaattg ataccgtgcg aacagacctg
    34921 ccggacagtt ctcctgtctg tttgaatggt atgaatatat acgaaagtct gagcgagcgg
    34981 catccaggct tgtttgccaa aaatcagaac gtgattttcc gtagtgcatt ctttgatgac
    35041 ggtcaggcga tatcctccga aacaatccgc aaaataatgc agagtacccc gtgcgttgaa
    35101 tcacaaacaa catctgccgg aagctgggaa cctgccacgg aactgatccc ccgtcaggca
    35161 atatccggtg acactacact ggctgaaaaa gatcggactg ctggcttcac aatgcggata
    35221 gcaccggaga ttgagcgtgg aaatttccac ctgctactca caaccactga cccgatacgg
    35281 aaacagactg tcgagcagaa tattttactc aaaccggacc agccccttat cgtgagtggt
    35341 tttactggag ttaatgctga tagccaaagt gagaagcgga ttgtcatcat tacgccacac
    35401 gtgcgttgat tcccctgata tttaaattac ccgcctcgtg cgggttttct tttgtctgaa
    35461 atatggagga acaccatgaa atccaccatt ttattgatgg ttgccgccac cgcagcatta
    35521 cgaccaggct gcacagatag tagaacacac cccgtgcctg agacaccgtt aagcaaaatc
    35581 atgttatcga tgattgccgc aagtgctatc gcactctctg cccccgtata tgcgtctgat
    35641 ccgtgtgctt ccgttctttg tctgtacggt aaagctatcg gtagcggcgg cgggagcgaa
    35701 tgcaaaagcg ccgaaaagga cttctttaat atcatcaaaa agaaaaaggg atctattcgc
    35761 tggagcaaaa cctttgatgc ccgaaaagcg tttcttaatc aatgcacgac cgcagacccg
    35821 gcggcgatct caaaaatcat gagtaagttc ggacgttcct ggggttaacc atgaaaaaga
    35881 tcattattat tcccaccaca ttattgctga atgcgtgttc ccatgcccct gaacccgcac
    35941 aggcaaaagg aggttggtat gaactgaata ccacaattga gcaggtaaga gcagacacat
    36001 accataacgg ggtggtcctt cagcagcccg tgtcacagcc aaacagcact gttcaataca
    36061 gcaatgataa ttatctcaaa aaggaagcca taaacgtaac tcccgcgcct cgtattgcag
    36121 aaaccgtaaa accacgttct gagcaatcag cgacagcgcc aaaaaaccag gacagcaata
    36181 atagttttct gaagccaaca acaaacagca taacttcatc tggtgagata aaaacagcag
    36241 ccaaaggagc aactaaacag cattctgaac aaccagcact ccctcccgca aagccaatca
    36301 gtagcaacaa ccatcaggca caaacggcac aaaatactga tcagcagaca aaaccgcgtc
    36361 ctgaacaacc accgctaatg tcaaaaagcg gttttctgaa aaaaaacgct aacaacgctg
    36421 ttccggccac cacgcttaca ggcccatcaa cacctgaaaa gcaaatttac tttgttcgcc
    36481 atgatggtaa aggctcgctg caaaaagcag taaaagaaat tgtcccatcg gactggacgg
    36541 ctgaaatatc cccggaggta acgaaaactt tccgtcgcac gatatcctgg cagggcaacg
    36601 atcaatggcc ttatgtcctg gataaaatgc ttcgcaacta cggtctgacg gtaattaaga
    36661 acaccgaaaa aagacatctt ctgattgatt ttcaacaaca gaaagggaaa acatcacaaa
    36721 aagcacctgt atctcctgac aaaacccctg cgtctcctgt caggacacca gtttcctctg
    36781 acaagtttcc tcaaaaaccg ctaacgcctg tcaccgttcc gcaaaaacag acagaaaaac
    36841 tcacctggaa tcttaaaaaa ggttcgacgc tgcgggatgg cctcacagaa tgggcgtcaa
    36901 gttcgccgtg tggtaattca acctggaatc ttgtatggga tactcctgtg aactacagaa
    36961 tagatgctcc tcttattttc cggggaaact ttgaatctgc attaaaagat acgctgatgc
    37021 tttatctttc agcagataaa ccgttatacg cattcaggaa tattgcacaa tgcgtaatca
    37081 caattaaaga cacacaacag gagtaatcgc tatgggttgg ttcttcagct tgctcctgat
    37141 attcctgtca ataggcagtt actatctgac agataacaat aaccaaacca tacagcgaat
    37201 gaagttgctt cctgcaaaac aggaagcaat tgaatttgtc catttcgcaa atgttatcaa
    37261 tgactatctt tataaatatc cagacaaacg taattcagga ggaacgttaa catctgagca
    37321 aatcggtata acacccgttt atgatattca tcatattatt tacggtaagc gagtttatat
    37381 ctggtctgcc gatacagaag gtctgatgtc tgctttgcag cagcaaacaa aacattcagc
    37441 aatgttagga agagtaaaaa ataagaagat tgtcgataat caggggaatg atatgggcgt
    37501 tcccgttcct tcctccattc cagaagaggc tattgtactc attaactaaa tatcccctga
    37561 caaggggatt ctgaactgga gtctgcatat ccgacacatc attatgtggg ccggatatat
    37621 cgctacggcg cggacttcag tccagaaaat ctttaccgga gatacccatg caggataatg
    37681 atgatgtcag cgagcttgat attgccactc gtgaagtcct tatcttacga tgcaatctta
    37741 ttcagcttgc ttctgaatat ataaaaataa atccccttaa aaacacccga atctacacag
    37801 atttaattca tcgctcagca gatgttatca aaaatatcga acaaggtaac atccagaata
    37861 aacataatta tctgtcacag gatgtaaaac atacgcttgt tttatacgac ctgtacaaat
    37921 cagactttga acaatgtccg ggggcaaaat cccttatacc tgtcagggaa aaaattgtct
    37981 cgctgaaaga acttctttcc ggcgctaatg agctggacag tatcgttcgt cgcccccgca
    38041 ggaaaaaacg ttcttcacga atttaatatc aggagataaa tcccttatgc agttatcagc
    38101 ggctgttctg gcagcactga taagtcagtg tgcccctgat gtatcacccg atacgatgaa
    38161 tgccctgatt atgactgaat caggggctaa tccatatgta atagcgaatg tttctgacgg
    38221 aacaagtaag tattttaaag atgaaaaagg agctattgaa tatgcagaaa aattaacagc
    38281 agaaaataaa aggtttagtg caggtctgac acagatatac agcaaaaatt tcccatcact
    38341 caatctgact aataaaacag tttttgaccc gtgtacaaat ataaaagcag gagcggcagt
    38401 cctgacggac aattatctga gacaaaagga gggtagtaat aatcaaaaaa ttctccgcgc
    38461 tttatctttg tattattcgg gtaacgaatc aacaggattt attaaagaaa agaaatttaa
    38521 caacacttct tatctggaac gagttattcg taacgcgaat aactatatcg tgccatcaat
    38581 ccgtgaaaaa actgatgaat cagaaataac ccccccgaac gatgaagaga aaacatcacc
    38641 ggactgggat gtttttggag attttagtta atgaaagtca aatcaacttt gcagtatttt
    38701 attctggcgt ttttcctgtc actaactgcc tccgttgcct atgcaggtgg actcgacacc
    38761 gcaacaaata ccatgacaga acttaagaca tgggcattta gctttggtgg tgtttgtgct
    38821 ttgtgttacc tgatctataa cgtcatcatg gcattcatgg agaagaaaag ctggtctgat
    38881 gtaggaatgg cgcttgtcta ttgttccctc gctggcggtg cactttacgc cgggaactgg
    38941 gcgctggaac tcttcaaata agtaatccat atatacaact gtgccgcata tttaccttat
    39001 gtgtgaattg cggctttttt catggtgagt tatggacaaa gtaaatgaac atgtcagtga
    39061 gtcattcatg acttataacg ggtttaaccg tcctgcgtta attgctggta tacccttaat
    39121 gttgttattg ttcacggctt ttttcgctgt tctgacaggc ttccccgcta ttttcctttg
    39181 gggtataaaa gggataatta ttcctgtcat atgtgcgctg tttcttttta tagtaaaact
    39241 ggcctgtgaa aatgactcaa acgcactaag agtcatccgt ttaaacctta tggggctttt
    39301 gttaaaaatc cgccacagag atttaattat tggttattca tctgtcaggt aacatatatg
    39361 cacaaaatca aattaaaaaa cagtgacaat atggatgttg ctcgtgaata tcccgattat
    39421 cgcttccata taacagacag tattatcttt acttctgaca ggaaaatgct ggcttcactt
    39481 gttgtagcag gcattccatt tgagacagag aacgataatg ttcttacaaa tttatttaac
    39541 agcgttaaaa acttcctgat tgggttagga aaggaaggcg acctgtattt atggactcat
    39601 cttatcaaaa aaagaataac cattgatgga gaatggaatt ttgacaatgc ttttttaagc
    39661 aggttttcaa aaaaatacct tgctctgttc acatccagcg cattctacaa atcaacatgg
    39721 tatttaacat ttgggattcc ctacgatgat gttgataccg gaatcgagcg catgaatgaa
    39781 atgacacaac aggcgcaaaa agcacttcag ccatttaacg cttctgtttt atcagttcac
    39841 aatacttata ttagtgaggt ggcagactat ttatcactat tgctaaatac agaacataac
    39901 atgattcctt tatcatccac tcccttatca tccagtattt gtgattctga atggtatttt
    39961 ggtgctgatg ttcttgaact gcgtaacaac gaatcggata gtaaaaagtt tgcaacgaat
    40021 tatattttga aggatttccc tatagaaacg acccccggac aatgggattt tcttctcaag
    40081 caaccctatg aatttattct tactcaatcg tttatttttg aatcacccac aaaaaccctg
    40141 aagaacattg attcgcaatt aaacaaactg caatcagcta atgatgcagc caaaacacaa
    40201 caggaagaac tcgaagctgg taaagaagcg gtcgcagccg gaattacgtt gtttggttca
    40261 ctacactgcg cattaacggt attcggtgat acaccagatc aggccagaag caatggtata
    40321 aagctctctg ctgagtttat tacttcgggt aagggattcc gcttcagtcg cgcctcactc
    40381 gcatcacctt ttgttttttt cagtcatatg ccgctgaata agaggcgtcc actggatacc
    40441 cgaagaacaa taaccaacct ggcctgtctg atgtcttttc acaattattc ctccgggaaa
    40501 aaatcaggca atcctattgg tgatgggtcc gccataatgc cgttgaaaac ggtgtctgac
    40561 agcatttact ggttcaatac gcattacagc cccccggaaa aaaatgttac cggacaaaaa
    40621 attgccgggc atggaatgat tcttggcgca acaggcacag ggaaaacaac atttgaagca
    40681 gcagccagcg gttttcttca acgctttgac cctttaatgt ttgttgtgga tttcaaccgt
    40741 tctactgagc tttttgtccg tgcatacgga ggaagctatt tcacgttgca ggaaggcatt
    40801 tatacaggct gcaatccgtg gcaactggca gcaggcccgg aatctcccgt ctggcacaga
    40861 cttctcgcat ttctgaaacg ctggacacag gttctggcac gagacaacca gggcaacccc
    40921 tgttctgatg aacatggcat tgaattaaac gctgccgtgg aaagcattat gcgaatgcct
    40981 gtcgaagaac gccggacagc ccttcttctc gatatagtca gtcctgaact tcagacgcgt
    41041 ctcgccaaat ggtgcgacaa cggcgaatat gcctgggcgg tggattcccc ccggaatacc
    41101 ttcaatccac tgcatcataa aaaagtggga tttgatacaa ccgttgtcct ggacacaaaa
    41161 aacggtattc atcctgcctg tgaaccttta ctcgcggtcc tgtttttcta caaagaaatc
    41221 atgcaacgcg gcggcaatct gatgctctcc attattgaag agttctggat gccagcaaac
    41281 tttcccatga cacaaagcat gattaaaagc gcactgaaag cggggcgcat gaaaggtgaa
    41341 atgatgtggt taacatcaca gtccccggaa gacgccataa actgcgcaat ttttgcggcg
    41401 ctggtacaac aaaccgcaac gaaaattctc ctgcccaatc ccgatgcaaa atgggaagga
    41461 tataaagaaa ttgggcttac tgaaaaagag tttgaaaaac tcaaagagct gacgaaggag
    41521 tcaaggacca tgctcatcaa gcaatctggc tcttctgttt tcgccaaaat ggatttgttt
    41581 ggattcgatg agtttatccc cgtgctttct ggctctgaaa ctggcctgtc tatttttgat
    41641 gagattattg ctgaaaaagg agatgtagct cctgatatct ggataccaga actcctgaaa
    41701 cgcctgaacg gttaatttct ctgttttata cagaacggaa aacaatatga aaatccccct
    41761 cataattgcc tccgcgctat taattagtgc atgttctcac acccccaatc ctgtgcagaa
    41821 aaaaggggga tggtttgagt taaacacagc aattgaacag atcaaagcag gtgattatta
    41881 atggaaaaca caaactatta tgaacattca aaaaaagaag cctccaaaaa gaaatttgaa
    41941 gaaaagaacg aaaaaaagga ttatttcaag gccatacgtg actttgagcg cagtgaaatt
    42001 gaaatcataa agaaaaaggc aaaaacattt accattctcg ccattggtga atttgttgta
    42061 atttgcattc ttggtttcgc aatagcctcc cttgctccat taaaaaccgc tgtaccgttc
    42121 cttgtgcgag tggataacag cactggatat actgatattg cccctcaatt atctgatgct
    42181 aaggaaagtt atcaggatgt tgagactaaa tatttcctgt caaaatatct cattaactat
    42241 gaagcatacg actggcagac tatccaggaa caggccgata cagtaaaaac aatgtcttcc
    42301 caaaaggtgt tttcagctta tgacaccatg attcgtgctg attcctcacc actgaacatt
    42361 ctgaaaaaca actacaaaat taaggtccag attaattcag taatccttct aaggaaggat
    42421 atggcgcagg tgcgtttcaa aaaaatggta ctggatttat ctggtaaacc cgcccccgga
    42481 tacagagcaa cagagtggat ttcgacgatt tcttttgact gggataaaga tatcaaaaca
    42541 gaaaaagagc gccttgtgaa tccgctggga ctgcaagttc tgagctacca acctgatcca
    42601 gaggttataa aatgatgctt aaacgcacta ctgcgatagt tcttttgtcg atgctacaag
    42661 tacctggtgc tttagcagct atgtacggca caccatcgga acgagacggg cgtattcaga
    42721 ccgtagatta taacgagcag gatgtattta atgtgcgcgt aaaagcaggc gcacaaacaa
    42781 caattaagtt cggacaagac gaaacaataa aagatgtcgg aattggtgat ccagaagcct
    42841 ggtcagtatc ggtcagggac aacactctgt ttctgcgtcc aaaagcagaa gaaccggata
    42901 caaacgttac cgttcagacc aataagcata tatatcctct ttatctgata tcaaccacga
    42961 aacaacccac gtatattctg cgttttaatt atccgaaacc accgtcagct accgtaatga
    43021 ctgaaaagcc atttccatgc actgatggtg gaataattaa tggtcattat caactcaagg
    43081 gggacaaatc aattttccct tatcaggtat gggataatgg cgaatttaca tgcatgagat
    43141 ggactaataa acaggaaatt ccggtccttt atcgtgttga tgccgatgga aatgaacatc
    43201 tggttaacgg agacagaaat aaaaacacaa tggtttacta tgacgtggct gaaaatctcc
    43261 gtttgcgcct gggtgatcag gttgcagata tcagaacatc atcaatcgtt aatcgtccgt
    43321 ggaataaaaa aggtacgtca aacggaaaaa cacgagtaga gaagttcagc tatgaaaaat
    43381 aaagatgatg aaaaaaataa tgacgcggga aatcgcggaa ttatcgaagt aaaaggtaaa
    43441 gcagcaccaa aaaaaatatt aatcctcatc atattactga ttgccgcgtt atttgtgatc
    43501 attatcttgt ttaaagttct ttcacgagaa caggtcgttc agcaaacacc tcttgagaag
    43561 tctgacgaga cactggtcac aaataccaac aatggcgttt cactgacaac aatgatgaaa
    43621 aacatcgaag aaaaggaaaa actcgatgcc gctaaccgca ggaaagcaca ggaggagcaa
    43681 gaacagaaac aggcagacaa tgccccgtca gcgccagcat cacaaaaggc cgatcaaaca
    43741 gccgtcaatg tgatagccaa cggcactccc caaaccgcca gtggagatcc aaaccaacca
    43801 caaccattgc caaaatccgt ccgacaactg atgggcgaca caatggtgaa gatcgacaat
    43861 caggaaccag gcgaaaaaaa ccaggaaaga gatgatttac agggcagtca gtacgcagac
    43921 ggaaaggtat cccctgtgct gaaccgccga tatctgttat ctgcgggaac agcattatcc
    43981 tgtgtgctca aaacgaaaat cgtaacctct tatcccggta tcacaatgtg tcagttaaca
    44041 cgagacgtct ggtcggataa cggcgaagtg cttcttgccc gtaaaggagc attactgatc
    44101 ggggagcaga ataaagtcat gacacaggga gtagcccgtg tgttcgttaa ctggacaacg
    44161 ctcaaagatg aaaatgtcaa tgtgcgcatt ggcgcacttg gcactgacag tctgggcgct
    44221 tccggccttc ctgcatgggt cgataatcat tttggtcagc gttttggtgg tgcattgctg
    44281 ctgtcattac ttggtgatgg tttagatatt ctgaaaaaca gcacgcaaca aacaggctca
    44341 aacagcaata tcacctacga aaacacatct gacgcaacaa aagaaatggc aaaaacaacg
    44401 ctggacaata cgataaatat tccccccacg gcatatatta atcaggggac cgtattgtct
    44461 gttattgttc cgcgaaatat cgacttttca tccgtatatg aacttcagta attcagtaaa
    44521 gcaattgata tgaataacat cagagatact agtaatacat cacaaccacg agataacagt
    44581 aaaaccgcaa gacgatatct ggatatgacg ggtatccagt ctgttcttaa tattgaacat
    44641 gtcacagaaa tatctgtgaa taaaccagga acaatatggt ttgaagggaa aaatggctgg
    44701 gaatctaaag atgcgccaga cgcgactttt gataatttaa tgacacttgc taaaactctg
    44761 acgaacttat caaagataaa aataccactt agccatgata atcccattgc atcggtagtt
    44821 cttcccggtg gggaacgtgg acaaatcatc attccacctg caacagaaaa taacagcgtt
    44881 gtgatatcta tccgtaagcc atcattaacg cgctttacta tagatgatta tgtccgaaca
    44941 gggcgttttg ataatgtcag gattgcgacg aaacacgaag ccatcctgac tgaacggcaa
    45001 cgctacctgt atgaattatc ccggcgtcca gatggtcaat ctaaagctca atttttaaga
    45061 gaggcagtta aagaccgtct taatttttta atcgtcggtg ggactggctc cggtaagaca
    45121 actatagcaa aggcaattgc agatatcttt ccacctgaac ggcgttatat aaccgttgaa
    45181 gatgtaccgg aaatgtctct gccgctgcat ccaaaccata tccggctttt ctacaaaaaa
    45241 aataccgttg aagcgaagga aatcattgaa gcgtgtatgc gattaaagcc agatcacatc
    45301 tttcttgctg aacttagggg taacgaagca tggagttatc tggaggcgct taatacaggg
    45361 catgaaggct caatcagtac cattcatgct aataatactt atgcctcatt ttcacgactg
    45421 gcaagtattg taaaacaatc tgatgttggt atgactgttg atatggacct catcatgcgc
    45481 acgataaaaa catcaattga tgtcattctt tttttcaacc ataccaggat gactgaactg
    45541 tattacgaac ccgaagaaaa aaatcgcttt ttgagcacaa tgtaaattct ggagataact
    45601 atggatgcaa aaaagacggg agggttaatt ctcttcctgt tactgcttct tgtgggtgtc
    45661 cttatagcct caaactatct cggtggatac acagcattaa gatattcatc cgttgatatg
    45721 tctttgctca agtgggatac attccattct gtaatctcaa cattttctgg caacccacaa
    45781 tataaaaaac tcgtttttat ggcatggttt ggattcagcg ttccattaat attctttgcc
    45841 atattcatgt tgattgtcgt gattgggatt atgcctaaaa aagtcatcta cggtgacgcc
    45901 cggctcgcaa ctgatatgga cctgagtaaa tcaggttttt tcccggataa aaaatcacct
    45961 tacaaacatc caccaatact catcggtaaa atgttcaagg ggagatacaa aaaacaattt
    46021 atttatttcg ccggacaaca atttttaatt ctttatgccc cgacacgttc tggtaaaggg
    46081 gtggggattg ttatccccaa ctgcgtaaac tatccaggaa gtatggtcat actggatatc
    46141 aaacttgaaa actggttttt atcagccgga ttcaggcaaa aagaattagg gcaagaatgc
    46201 tttctctttg cgcccgccgg atacgcggaa actatcgacc aggcaattaa aggacagata
    46261 cgctctcacc gctggaatcc tctggattgc gtcagtcgca gtgatttact tcgtgaaacg
    46321 gacctggcaa aaattgccgc aatccttatc ccggcaagtg atgatcctat atggtctgat
    46381 tctgcacgaa acctttttgt cgggttagga ctttacctgc tggacaagga gcgttttcac
    46441 ctggaacaga aagccaaagg tcataatgta ccggacgttc ttgtttccat cagcgccata
    46501 ctgaaaacgt cggttcccga tggcggcaag gatctcgccg catggatggg acaggaaatt
    46561 gaaaaccgta gctggattag cgataaaaca aaatcattct tctttaagtt catgtcagca
    46621 ccagatcgca caaggggaag tatagaaaca aacttttcat caccgctgag catcttcagc
    46681 aaccctatta ctgctgaggc gacgaatttc agtgattttg atatccggga tattcgtaaa
    46741 aagcccatgt caatttatct tggtctgaca ccggatgctt taatcactca tgagaaaatt
    46801 gtaaaccttt tcttctcatt actggttaat gaaaactgtc gtgaactgcc ggaacacaac
    46861 ccggacctga aataccagtg tcttattctc ctggatgaat ttacatcaat gggtaaatcg
    46921 gaggtcattg aacgcgctgt tggttttaca gcaggttata accttcgctt tatgttcatt
    46981 cttcagaatg aaggacaagg gcaaaaaagc gatatgtacg gtcaggaagg atggaccaca
    47041 ttcactgaaa acagtgctgt tgtgctttac tatccgccga aatcaaaaaa tgctctggct
    47101 aaaaagattt cagaagagat tggggtgcgt gatatgaaaa tatccaaacg ctcaatatcc
    47161 agtggtggtg gtaagggagg aagttcacgt acacggaatg atgatgtaat agagcgcccg
    47221 gttcttcttc ctgaagaaat tgtgtctctc cgggataaga agaataaagc cagaaatatt
    47281 gcaatccgtg aaattataac cagtgaattt agccgaccat ttattgccaa caaaataatc
    47341 tggtttgaag aaccagagtt taaacgccgc gtggatatcg cccgtaacaa tcatgttgac
    47401 attccaaacc tgtttacaca agaagtcatg gatgaaatag caaaaattgc agaaatttat
    47461 ctccctaaag ctggaggaaa aaaagttatg gttgccggag gcaatgtgat tactaatcca
    47521 gaccttgata atcacgataa aacagacgta tctgaataat cctcgcaacc agcaaatagt
    47581 attttgcata ttccataagg taattaaata tgaataaaaa attgctttgt ttattaatat
    47641 cctctttttt attatcaggc tgtgcaaact tcaaaaaaat caatgctaat gaacttgctg
    47701 ccgaaagaga cgcacaaaaa gcgactgaat acgcgaaaaa aattcgtaat aacccggtta
    47761 tccaggattc aacaaaacaa tggattaata caacgccaat tattgaaaag caggtaaagc
    47821 aatcagcgcc gccctgcccg attgtgatta atactcgttc agatattgag ctacgccaga
    47881 tcgcacaacg catcacacaa acctgtcata tcccggtacg aatcagcgcc gatgtctgga
    47941 cctatctgaa cggtacaggc actggctcaa cacaacaaat gacaggctca attccagcac
    48001 ctgatgcaaa tggaatggtt ccactggcgt cagtaggcag tcagccagta aaagtctctt
    48061 ctggcggtac atcactcccg gaactgaata tctccgggct tccagcccta ctgcaaaccg
    48121 tatcttcacg gctgggaata tcctggaaat acgataaagg tcgtatcaca ttcttctatc
    48181 tggaaacgcg ctcattcccg atcacatata tggacagcaa tgtggcatac aactcaaaag
    48241 ttgtgagcgg cacaatgtct tccagtggca gtaccggctc taccagttct ggcggtatga
    48301 ctggcgacgc atcaaatacg caaactacaa ccgtggaaat gaaatcatcg ctgtacaacg
    48361 acctgaaaag cgaagtttcc tcaatgctga caccaggtac agggcgcatg tatctgtcca
    48421 ctggttcact gacagtaaca gataccccgg atgtactgga cagcgttcag gagattgtga
    48481 acaagcgcaa taatgaaatg agtcgtcagg ttgtgctgaa cgttgaaatc ctgagtatca
    48541 agaaatcaag ccaggaacag gcgggaatcg actggaacgc agtatttaat gatggtcatc
    48601 ttggtctgag tcttggtggc tcatttggtg atgccgccga gaatgttatt accagtggtg
    48661 tatccatcgt ggacggtaag ctggctggct caaaagcatt tctgaaagcc ctgtcgtcac
    48721 aaggcagcgt cagtgtcgta acgcaaaact ccgctgtgac taaaaacctg acgcctgtcc
    48781 ctatgcaaat tgccaatcag cagggcttca ttgaaagtgt cacaaccgat tctaccgcca
    48841 atgtgggatc atccacgtca ctgaatgcgg caacaataac aaccggattc aatatgactc
    48901 tgcttccata cattcagccg gattcacaaa acctgcaatt gctgttctca atgagtctgt
    48961 ctgacaaacc tacttttgag gtgttcgaaa gtggcggcag taaagcacaa acgccgaatg
    49021 tggatttgaa aacaattaat cagactattg atctgaaatc aggccagaca gtcattctga
    49081 gtggattcca gcaatcaaac cggaaaacca gtaagcaagg tgtaataacc ccctccttct
    49141 ttggacttgg aggtggcgtt aacagcgaag acggcgacac gattctggtc gttttgatta
    49201 caccaaatgt gcttaattcc ggctccagtg cagtaataaa aaatgtgaac taattaactg
    49261 aaaactccct gaaaaaacac agggagtttt tttggaggtc actttgtctg agaataatca
    49321 gaataaccgg aatttcactt cggttattaa aaacaagcgt gcttttttct ccggtctgga
    49381 ctggaaaacg cttccttcag aagaaaagaa tgcgcgtaca ttcgcaagaa aaaacgacgc
    49441 tgaatatttt ctctcctgtc agtatcagga ttcagaaaat gaaaccaaaa cgatggtggc
    49501 atttatcaga aaagaggatc ttcccacagg ggcgtcctca ttctggtcac tggcactgat
    49561 gataaaaccc ctcatcgaac ctgacggata cgctatctgc gaactcggtg atctttatgg
    49621 ctttgtttcc tgcgtcaata acgttctcgt caacgatgtt gtaggtaaca aaagtcagat
    49681 catgagtgct ctgacaacat ttcttgagtt taatgaaaca ccagaacccg gctggaaact
    49741 ataccagcct gaatcatggg atatcagcca ggcactcccc tcactcactc tgtctgcgtt
    49801 gattgacgta aaaaaaccgc cgaaagaggc ggcgtttact cgcgtatccc gaaaacgtca
    49861 gttcatgatt tatggcggaa gtgccattct ggccatactg ctctggaacg ggatcaccat
    49921 gtaccaagaa taccgggaaa aagaagctgc ggcagaagct gcacgtcttc gtctggcaaa
    49981 agaaatggca gacaaacagg caatacagat tgccccaccg tggcaacatt tacctgaaat
    50041 aaaaccattt attgataaat gcattgataa atgggatgca ctgcccttat cgatcgccgg
    50101 atggcgtttt gaccttgctg aatgcagcac atccggtaat gacgggctgt tacgcacatc
    50161 atataaggaa ctgagcggcg ttacggtcga ggacttcagc acacggatac gagaaatatt
    50221 ccaggggaca accacagcaa cttttgtatt gccagaaggc agcgccgggg gattttctct
    50281 tcctgtcagt tttgacgttt cgcctgatcc aattaccccg gacacattgc cacaggcaac
    50341 agatattcag gaacgcctga caacatttgc acaaaaaatg aggttaaaac tcacctggca
    50401 ggaaattgaa aacacaaaaa cagatgaaga aggccgtcca ataattctcc cgtggaacga
    50461 gtatgaatta atgattcaga ccagcacccc gccttcaata cttttcgcta actttcatga
    50521 acctgccgtt cgcttccagt atgcaggaat aaaactggaa gaaggaagac tgaattatga
    50581 gattaaaggt gcattctatg ttaaaaataa ttaaaccaac gattatttct gtcttttttt
    50641 tcagttcact tgcttacgca acagaatctg aaagcacacc aaaagacgaa ataaaatatt
    50701 catctccgac cattttacag gtagagcaga ttcaggctga aacggtaatt tacgaagcaa
    50761 agctggcgcg tcagaaggct gtcagtgaat tgcgtaatct tgatttgaat ggtgtagcgt
    50821 ccgcaacgcc agcaataacg ccctcttccg ggtattcttc tcttgcagat accgatatac
    50881 cagcgcaacg tgtagccgct aaatcacttc gtgttattga aatatttggt acaccacaac
    50941 aaatgtcagc acgaatttct ctcctggacg ggtcagtaac tgatgtcaag gtcgggcaaa
    51001 gtattccagg tacttcttat aaggtggcat caatcactgg taatggcgtc tggattcaga
    51061 atggtacaga gaaacgccag cttattcttt aatgctattg aaagagacga cacataatgt
    51121 ttttttctga cgcagactat ccaggaaaag atatttctga tgttgtatac gtcagtatat
    51181 ctgaaaaaga cgataaacct gttcatgttt atatcgctga taacagtaaa ggacagcgtg
    51241 ctgttcaggc ttatattggc actctgaatg ttaaatatcc cggaaaggta aatataacct
    51301 ggaccactct tgatgttatc gcatcccgct accaggacag cgaaagaagg tctgattcaa
    51361 actcatcaca acacttaaac agcaaccagg aaaaggtcat tagctacctg gcgaaagcaa
    51421 acaacctggg aagttccgat ttgcacatca cacctggtcg ggacggttcc gagttcactt
    51481 atgtcgaagc acgcgtgcat ggggaactgg aaattctgga tgtcatcccg cgtaaagaag
    51541 ggctggaatt gctgggtgct gcctattctg gaatgagcga tgttatcaaa ggtacgcagt
    51601 ttgacccagc aataccgcag gatgcacgta tcgcagagaa ttttctgaag cctgtaaatc
    51661 tttttggggc gcgctattcg cattatccgt gcgtgggtgg tgtgtacgcg gtattccgcc
    51721 tgattaaaga tgacagcgag gatattccca ctttcgaaga acttggctac atgccgcaac
    51781 aaatccagac aatcaggcga atgttacaac gcccggaagg aattatcgtt ttatccggcc
    51841 ctacagggtc cggtaagtca acgactctga gaacggcttc agaagcctat ctgagcacgt
    51901 ttggtttcaa ccataacgat aatatgcgtc tcccccgaaa acgccttttc accattgaat
    51961 caccgccgga gggccgcatt cccggcgcaa tacagacggc agtcagggat tccgtcgatg
    52021 gctgggttga cgcgattaaa tccgctatgc gacttgatcc agacgcgata ctgaacggcg
    52081 aaattcgtga tcacgcatcg gcattagcag caatcaaagc ctcgatgaca ggccaccttc
    52141 tgttgacgac cttacacgcc aacgatgccc tgaatattat tgagcgcctt gaaatggaga
    52201 atattcaggc caggctgatt gcagatcctc ttctgtttat cggtctgctg agtcaacggc
    52261 tcgttcaaaa actctgtcct tactgtaagc gcacttatgc tgaaatggca gacaaactga
    52321 gtacagaaga acggaaactc attgaggaaa attgcctgcc ggaacaggtc cggttgcgca
    52381 atcttgacgg ttgtgagcac tgttataaag gcgtaacggg aaggacggtt atagcagaag
    52441 tcgtctcacc cgacgcacgt ttttttcagt tgtatcgtca gtccgggcgt ctggaagcaa
    52501 aatcatactg gcactatgaa cttggaggaa ttacccgtaa tcagcactta ttacacctga
    52561 ttaatcatgg cctggtagat ccgttgtccg cacacttcat atcccccatt gacgaagata
    52621 aatactcaat gctcccggag gggacatggc gataaaagat atatttgaga aactcaattc
    52681 gatagaaatt gatttctctg gaatatccca ctggctggca aaatacacat tcaggtattc
    52741 cagaataagt ttatatgaag atttatctgg aatgttaaat gatggcataa atgtaaagcg
    52801 cgctcttaca cacctgattg atgtagaaac agactacggg aagaaaacgg gttcttctgc
    52861 aacctactat atttgttgtg agtgccttaa tgcactgaat aacacagggg ctatatcttc
    52921 agcattaaaa aaatatataa aggaggatga atatcaatta atatccagcg gtgaaattcg
    52981 cggcgacctt gccggaggat tagttcaggc cataaaaatt gtcagaagtc gttctgaaat
    53041 gacaatgact cttgttatgt cgatgattta tccatccgta ctggtttttg gttgtctggc
    53101 aaacatgtat atggtccacg ataccataac acctgttttc ctttctctcg caccgaaaga
    53161 acgctggaca agttctatgc gattactgac agatacgtct ggtttcctga tagaaaacgg
    53221 aacgtatatt ctctgcttct gcatcgtact gtttttcctg atcagatatt cgcttgcgcg
    53281 ttatacagga ccgggccgtc agtatcttga ttacattccc ccctggtcac tttataaaac
    53341 atttaatggt gtaagttttc tcttcaacat ggcctccatg ttaagtattg atattcccgt
    53401 tgcaaaagca ctggaaaggc tggagaaaaa cagcactcaa aatagatggc tactcgaacg
    53461 aataaaagaa ataaggagat atgttttact tggacagtca cttgcaatgg caatgaaaag
    53521 ttgcggttat gacttcccat cgaaattatg cattaacaaa ctattacttc attctgaaaa
    53581 tgctgacaat gcattgatga tgtctaacta tgctgataaa tggctggagg aagcaaaagg
    53641 aaaagtcaaa tcaacaggag tctggataac tgtagtatcc gcattaattg ttttcgcatt
    53701 tattgtaatg atgattactg ctctctacga tgtcagtaac gtcctgcaac actaatccct
    53761 aatattttta acctctcaat aaataaggaa ttatttatta tgtcttctat taatatttta
    53821 aatatgcgtt ctgttttttc ttctctttct gcacgccgta aaaaagaaca ggacaaaggg
    53881 gcaacactga tggaagtgtt attggttgtt ggtgttattg ttgtacttgc agcaagtgca
    53941 tataaactct attcaatggt gcaatccaac attcaatcat ccaatgaaca aaacaatgtc
    54001 ctgacagtga ttgccaacat gaaatcactg aaattccagg ggcgttatac tgacagtaac
    54061 tatattaaga ctctctacgc gcaaggatta ctgccatccg atatgatcgc agatacaact
    54121 ggcgcaagcg cgaaaaaccc gtggggcggc tccgttacaa tcaccacctc ttcggataaa
    54181 tactccttca atgttgtaga ggccaatgtc ccacagaaaa actgcatggc aatggtaaac
    54241 gccctgcgtt cttccagcgc aatctccaaa attaacaaca cttccacatc aaccgtcagt
    54301 gcagcaactg tttgcgcatc tgacagcaat acgctgacct tcagcactga ttcctgattt
    54361 ttcatgtgca tcggataagc gccttcgggc gcttattttt tccatgttta aggaggagta
    54421 ttgtgcgttc tgttctttat atcctgctat catgtatttc atcattaatc ttttcattgc
    54481 aacccgcata ttcagcgaca acgacccgat ttgatgcctg ctttgcacaa gccgggcaac
    54541 gttacctgat tgaccccctg cttctgaaaa gcattgccac tgtagaaagt tcactcatac
    54601 cagaccgaat aaatcacaac aaagaaaaag gaaaaatatt aagcaccgat tacggactaa
    54661 tgcaaattaa ttcatcacac atccctaacc tgaaaaaact tggcgtaata aaagacaaat
    54721 cagagcttat tgataacccc tgtctcaata tacaaattgg cgcgtggatt ctggcaacac
    54781 attttcagaa atgtggcata aactggagtt gtcttggcag ttataacgct ggttttaaag
    54841 aaagtaacga acagaaaaga atcaaatacg cacgctatgt ctacaataaa tacatggtaa
    54901 ggtaagttat gctaaacagc atatttaata cggcgatact ttgctgtgca aatatcgtct
    54961 gtcaatgcta cgcctacaat gaagttaaat cccgtttaaa taaacttaat gtatcttata
    55021 aaaccggaac agagaaatat tactgtctga tactgacaac gcttgccgtt ctgtatcttt
    55081 cattaaatca gctatcactg attcaatcca taatagtgat tgttttctat gccttcctta
    55141 cattaatggc ctgtatagac cttctttcat ttctactacc acgcctttat accgtgacat
    55201 ttatcttctc cggcctgtta tatcagacat ggaataacaa tatattgtct ggtttgtttt
    55261 gtgcaatgct gatgttcttc attatgctgt ttgtaagact ttactttgca tataaaaacg
    55321 gaacggaaag tttcggcatg ggagatgtgc tacttattgc aggaactggc gtatggtttc
    55381 caacgcctga gattgcctgt tcaattgtat ttattgccgt tatcggcgga attattttct
    55441 tcactcttgg cggattaaac aagcaaaaaa aatatattcc atttggtccg ttcctttgtg
    55501 gcggaatgtt tgtttactca ctcgtaccgg gaatattatt ctgaggatta agagcaatga
    55561 aaaagacaga taaaggtgta tctctccttg aggtattact tgtcatcggc ataatggtga
    55621 tggttatccc taaagtttat gaaaacattg aaaaccatct gaataatgtt cgctggcaga
    55681 atgcagcaga acacgcaaat acctataaca ccgctgttcg taattatgtt gctgacaatg
    55741 catcaacact acttgcaggc tctttaccca aaacaatcac gccagcaaca ctcattcaga
    55801 aaggctatct gaaatctggt ttttctgaat ccaattttgg acaaagctac attaccggta
    55861 ttgcaaagaa cagcaaaaca tcccgtctgg aagccctgac ctgtagtaat ggcggtcagt
    55921 ccctgtcaga agccggaatg cgctcggtag caagcatgat tgaagggctt ggcggctaca
    55981 tcaacagcag caagcaggcg attggcgcgg gtggcggctg gtctgacacg ccttcaaatt
    56041 acgggctgaa ctgcgcgacc gggcatattg caatggcact tgttggcgct gatttgcagg
    56101 aaagcgaccg tttgtatcgt tactccataa ctaatcgtcc cgaccttaac aggatgcata
    56161 cggcgattga tatgaacagc aacaatctga acaacgtcgg cactttaaac ggcaacgccg
    56221 ccgcgctctc cggcgatatc agcgcacgta acggtacgtt ctctggcgca atttcaggaa
    56281 atacagccac aaccaacggt gatatcactt cgaataatgg ctggctggtc acaaaaaaca
    56341 gcaaaggctg gatgaacagc acctatggtg gcggctggta tatgtccgat tcgtcctggt
    56401 tgcgcagcgt gaataataaa gggatttaca ctggtggcca ggtaaaaggt ggaactgtac
    56461 gcgctgatgg acgcctctat acaggcgagt atttacagct tgaaaaaaca gcaacggctg
    56521 gcgcttcctg ctcccctaac gggcttgtag gccgcgacag tacaggggcg
//
LOCUS       DAJVUP010000007        47217 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.007, whole genome shotgun sequence.
ACCESSION   DAJVUP010000007 DAJVUP010000000
VERSION     DAJVUP010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 47217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47217
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.007"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            27..764
                     /locus_tag="OQQ75_000443"
     CDS             27..764
                     /locus_tag="OQQ75_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1974888.1"
                     /translation="MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRF
                     IFPADRESISILLTNTSQESWLINSKINRPTRWAGGKASTVPAPLLAAPPLILLKPGT
                     TGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
                     DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQ
                     AIAPCHVAWRAINDYDGLSAKKEQNLP"
     gene            875..1885
                     /gene="pyrD"
                     /locus_tag="OQQ75_000444"
     CDS             875..1885
                     /gene="pyrD"
                     /locus_tag="OQQ75_000444"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HCS1974889.1"
                     /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA
                     KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR
                     LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME
                     KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI
                     APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST
                     EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT
                     HI"
     gene            2059..2601
                     /gene="zapC"
                     /locus_tag="OQQ75_000445"
     CDS             2059..2601
                     /gene="zapC"
                     /locus_tag="OQQ75_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapC"
                     /protein_id="HCS1974890.1"
                     /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAF
                     SPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNVLVAIRYLKPQMPKSWHFVSHG
                     EMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKI
                     MNDRLKPQVNVDSFSLEQAV"
     gene            complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="OQQ75_000446"
     CDS             complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="OQQ75_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein YcbX"
                     /protein_id="HCS1974891.1"
                     /translation="MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT
                     FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA
                     PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
                     RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ
                     KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA
                     ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ
                     ILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLAR"
     gene            3951..6059
                     /gene="rlmKL"
                     /locus_tag="OQQ75_000447"
     CDS             3951..6059
                     /gene="rlmKL"
                     /locus_tag="OQQ75_000447"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HCS1974892.1"
                     /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV
                     YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI
                     RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH
                     LRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGL
                     HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR
                     LAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK
                     NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA
                     EDYANRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYSDWVVVQEYAPPKTI
                     DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNA
                     HLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGALSTTT
                     VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR
                     MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT
                     LSQDFARNRQIHNCWLITAA"
     gene            6071..7978
                     /locus_tag="OQQ75_000448"
     CDS             6071..7978
                     /locus_tag="OQQ75_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1974893.1"
                     /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST
                     LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH
                     DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG
                     WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN
                     MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQL
                     VKDFSAQVLRGDKIVLIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA
                     ELDPDKTVMDNIAEGKQEVMVNGKPRHVLSYLQDFLFHPKRAMTPVRALSGGERNRLL
                     LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW
                     IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKL
                     QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER
                     WEYLEALKNGG"
     gene            8108..9361
                     /gene="pqiA"
                     /locus_tag="OQQ75_000449"
     CDS             8108..9361
                     /gene="pqiA"
                     /locus_tag="OQQ75_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiA"
                     /protein_id="HCS1974894.1"
                     /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW
                     DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF
                     FLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV
                     KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR
                     QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM
                     VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG
                     KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM
                     TMFSAMTFDPRLSWDRQPESEHEES"
     gene            9366..11006
                     /gene="pqiB"
                     /locus_tag="OQQ75_000450"
     CDS             9366..11006
                     /gene="pqiB"
                     /locus_tag="OQQ75_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706874.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HCS1974895.1"
                     /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE
                     VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT
                     VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV
                     ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTSNVRF
                     WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS
                     IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR
                     IPVLIRIEPERLKMQLGENTDVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT
                     PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTLSESQRT
                     MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL
                     DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ"
     gene            11003..11566
                     /gene="pqiC"
                     /locus_tag="OQQ75_000451"
     CDS             11003..11566
                     /gene="pqiC"
                     /locus_tag="OQQ75_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HCS1974896.1"
                     /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR
                     LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW
                     VVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
                     YDEMVKVLAGVWSQEAASIAQEIKRLP"
     gene            11822..11989
                     /gene="rmf"
                     /locus_tag="OQQ75_000452"
     CDS             11822..11989
                     /gene="rmf"
                     /locus_tag="OQQ75_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HCS1974897.1"
                     /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGW
                     REAMADRVVMA"
     gene            complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="OQQ75_000453"
     CDS             complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="OQQ75_000453"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014915875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HCS1974898.1"
                     /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT
                     ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG
                     KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD
                     LKVGLFQDTSAF"
     gene            complement(12646..14406)
                     /locus_tag="OQQ75_000454"
     CDS             complement(12646..14406)
                     /locus_tag="OQQ75_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon protease family protein"
                     /protein_id="HCS1974899.1"
                     /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF
                     ALEQLLHTRASSSFMLAKAPEESEYLNLIADAARTLQSDAGQLVGDHYEVSGHSIRLR
                     HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
                     LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE
                     MEPELSEQAIYSEFEDTLQIVDAESVSQWCRWVTFTARHNHLPAPGADAWPVLIREAA
                     RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE
                     ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE
                     LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA
                     LADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR
                     HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ
                     QEGRHRFPWPLRWLNWFIPN"
     gene            14592..15044
                     /gene="matP"
                     /locus_tag="OQQ75_000455"
     CDS             14592..15044
                     /gene="matP"
                     /locus_tag="OQQ75_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HCS1974900.1"
                     /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL
                     LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ
                     RLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKLDLQALLGKE"
     gene            complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="OQQ75_000456"
     CDS             complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="OQQ75_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HCS1974901.1"
                     /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF
                     INNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA
                     KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL
                     EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLK
                     SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER
                     RAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV
                     KGIKDVVTQPQA"
     gene            complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="OQQ75_000457"
     CDS             complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="OQQ75_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SulA"
                     /protein_id="HCS1974902.1"
                     /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM
                     MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES
                     MVRALRTGNYSVVIGWLADDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSG
                     LKIHSNLYH"
     gene            17245..17874
                     /gene="sxy"
                     /locus_tag="OQQ75_000458"
     CDS             17245..17874
                     /gene="sxy"
                     /locus_tag="OQQ75_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HCS1974903.1"
                     /translation="MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVS
                     DGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYS
                     LDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
                     SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE"
     gene            complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="OQQ75_000459"
     CDS             complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="OQQ75_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HCS1974904.1"
                     /translation="MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLT
                     IPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLST
                     SGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIG
                     HLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDESQAPLYDLALANGLLMATLN
                     QTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFR
                     FQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTL
                     GFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESA
                     LFRHAVRMSLVLCFGYAIIQITGMHHGFWILLTSLFVCQPNYNATRHRLKLRIIGTLV
                     GIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEG
                     FEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQ
                     GRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYIS
                     ALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRAD
                     SKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA"
     gene            complement(20009..20455)
                     /locus_tag="OQQ75_000460"
     CDS             complement(20009..20455)
                     /locus_tag="OQQ75_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HCS1974905.1"
                     /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI
                     TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC
                     ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE"
     gene            20578..22632
                     /gene="helD"
                     /locus_tag="OQQ75_000461"
     CDS             20578..22632
                     /gene="helD"
                     /locus_tag="OQQ75_000461"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase IV"
                     /protein_id="HCS1974906.1"
                     /translation="MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL
                     AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV
                     LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ
                     AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA
                     GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH
                     ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ
                     WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM
                     APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL
                     AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI
                     GKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL
                     ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARES
                     IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR
                     KP"
     gene            complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="OQQ75_000462"
     CDS             complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="OQQ75_000462"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HCS1974907.1"
                     /translation="MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYA
                     TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV
                     KALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK"
     gene            complement(23218..23880)
                     /locus_tag="OQQ75_000463"
     CDS             complement(23218..23880)
                     /locus_tag="OQQ75_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HCS1974908.1"
                     /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL
                     RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE
                     NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL
                     PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP
                     SS"
     gene            24053..24466
                     /locus_tag="OQQ75_000464"
     CDS             24053..24466
                     /locus_tag="OQQ75_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HCS1974909.1"
                     /translation="MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVI
                     PVSPKVAGKTLLGQQGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQL
                     GVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK"
     gene            complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="OQQ75_000465"
     CDS             complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="OQQ75_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HCS1974910.1"
                     /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND
                     ELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPR
                     LRN"
     gene            complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="OQQ75_000466"
     CDS             complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="OQQ75_000466"
                     /EC_number="2.1.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HCS1974911.1"
                     /translation="MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVD
                     HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY
                     RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALVSALQTLYPECAIYDRSDVA
                     VRKKEGMELTLGLVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY
                     VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV
                     RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI
                     LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA
                     CRVM"
     gene            26171..26449
                     /gene="yccX"
                     /locus_tag="OQQ75_000467"
     CDS             26171..26449
                     /gene="yccX"
                     /locus_tag="OQQ75_000467"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HCS1974912.1"
                     /translation="MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV
                     EVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR"
     gene            complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="OQQ75_000468"
     CDS             complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="OQQ75_000468"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusE"
                     /protein_id="HCS1974913.1"
                     /translation="MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW
                     EVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL
                     PKPVKCI"
     gene            complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="OQQ75_000469"
     CDS             complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="OQQ75_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000375124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease modulator YccA"
                     /protein_id="HCS1974914.1"
                     /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV
                     LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM
                     GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
                     HLAISAVFILISSGAILFETSNIVHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR
                     D"
     gene            complement(27732..27819)
                     /locus_tag="OQQ75_000470"
     tRNA            complement(27732..27819)
                     /locus_tag="OQQ75_000470"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(27783..27785),aa:Ser,seq:tga)
     gene            28246..29364
                     /gene="hyaA"
                     /locus_tag="OQQ75_000471"
     CDS             28246..29364
                     /gene="hyaA"
                     /locus_tag="OQQ75_000471"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 small subunit"
                     /protein_id="HCS1974915.1"
                     /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW
                     ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE
                     EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC
                     ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD
                     RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS
                     STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV
                     VAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA"
     gene            29361..31154
                     /gene="hyaB"
                     /locus_tag="OQQ75_000472"
     CDS             29361..31154
                     /gene="hyaB"
                     /locus_tag="OQQ75_000472"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase large subunit"
                     /protein_id="HCS1974916.1"
                     /translation="MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVIT
                     NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDN
                     ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP
                     GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVK
                     IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI
                     PDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV
                     LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ
                     ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG
                     RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP
                     RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI
                     LRTLHSFDPCLACSTHVLGDDGSELISVQVR"
     gene            31173..31880
                     /gene="hyaC"
                     /locus_tag="OQQ75_000473"
     CDS             31173..31880
                     /gene="hyaC"
                     /locus_tag="OQQ75_000473"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase b-type cytochrome subunit"
                     /protein_id="HCS1974917.1"
                     /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP
                     SVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW
                     QGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF
                     APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDGTVISTMV
                     NGYRSHKFGKISNKECS"
     gene            31877..32464
                     /locus_tag="OQQ75_000474"
     CDS             31877..32464
                     /locus_tag="OQQ75_000474"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 maturation protease"
                     /protein_id="HCS1974918.1"
                     /translation="MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG
                     GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE
                     VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLLAAEQSALAQLAAWGSVP
                     QLANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG"
     gene            32461..32859
                     /gene="hyaE"
                     /locus_tag="OQQ75_000475"
     CDS             32461..32859
                     /gene="hyaE"
                     /locus_tag="OQQ75_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-1 operon protein HyaE"
                     /protein_id="HCS1974919.1"
                     /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD
                     PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGVFRFPTTLVFTGGN
                     YRGVLNGIHPWAELINLMRGLVEPQQERAS"
     gene            32856..33713
                     /locus_tag="OQQ75_000476"
     CDS             32856..33713
                     /locus_tag="OQQ75_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein"
                     /protein_id="HCS1974920.1"
                     /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA
                     HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA
                     DDSKSEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP
                     IDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG
                     YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC
                     QWLAEAAPT"
     gene            33847..35391
                     /gene="appC"
                     /locus_tag="OQQ75_000477"
     CDS             33847..35391
                     /gene="appC"
                     /locus_tag="OQQ75_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit 1"
                     /protein_id="HCS1974921.1"
                     /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG
                     KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWAFYSNYVGDIFGAPLAMEALM
                     AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD
                     IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALR
                     SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE
                     QDQERNAFAIKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG
                     NREPHVLQAFRELEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI
                     MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP
                     WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ
                     PTQQQG"
     gene            35403..36539
                     /gene="appB"
                     /locus_tag="OQQ75_000478"
     CDS             35403..36539
                     /gene="appB"
                     /locus_tag="OQQ75_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1974922.1"
                     /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD
                     ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL
                     AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS
                     FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLSSQLATKRAALLVMLCFLLA
                     GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL
                     LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQL
                     TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY"
     gene            36552..36644
                     /gene="cbdX"
                     /locus_tag="OQQ75_000479"
     CDS             36552..36644
                     /gene="cbdX"
                     /locus_tag="OQQ75_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit CbdX"
                     /protein_id="HCS1974923.1"
                     /translation="MWYLLWFVGILLMCSLSTLVLVWLDPRLKS"
     gene            36724..38022
                     /gene="appA"
                     /locus_tag="OQQ75_000480"
     CDS             36724..38022
                     /gene="appA"
                     /locus_tag="OQQ75_000480"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acid phosphatase/4-phytase"
                     /protein_id="HCS1974924.1"
                     /translation="MKAILIPFLSLLIPLTSQSAFAQSEPELKLESVVIVSRHGVRAP
                     TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYFGHYQRQRLVADGLLAKKGCPQP
                     GQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA
                     NVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPS
                     ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF
                     YLLQRTPEVARSRATPLLDLIMAALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG
                     ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT
                     PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL"
     gene            complement(38137..40317)
                     /gene="etk"
                     /locus_tag="OQQ75_000481"
     CDS             complement(38137..40317)
                     /gene="etk"
                     /locus_tag="OQQ75_000481"
                     /EC_number="2.7.10.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HCS1974925.1"
                     /translation="MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLI
                     AVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGK
                     TIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN
                     GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETF
                     TVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQL
                     PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY
                     KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNR
                     QQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR
                     RGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPA
                     DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI
                     DADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL
                     LMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVS
                     LSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE"
     gene            complement(40337..40783)
                     /gene="etp"
                     /locus_tag="OQQ75_000482"
                     /gene_synonym="yccY"
     CDS             complement(40337..40783)
                     /gene="etp"
                     /locus_tag="OQQ75_000482"
                     /gene_synonym="yccY"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase Etp"
                     /protein_id="HCS1974926.1"
                     /translation="MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL
                     VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVR
                     GKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR"
     gene            complement(40771..41910)
                     /locus_tag="OQQ75_000483"
     CDS             complement(40771..41910)
                     /locus_tag="OQQ75_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HCS1974927.1"
                     /translation="MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTRNKDVIELPDNQY
                     DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE
                     LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
                     VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN
                     GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM
                     TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL
                     EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN"
     gene            complement(41956..44052)
                     /locus_tag="OQQ75_000484"
     CDS             complement(41956..44052)
                     /locus_tag="OQQ75_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS1974928.1"
                     /translation="MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ
                     MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD
                     QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
                     WGYAGNAGNITNPFCRVNDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL
                     RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN
                     FNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMS
                     GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG
                     TAPGQSEQLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL
                     MSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN
                     NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYVKQRDWD
                     NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVG
                     VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK
                     YQLYPMTAEREVPVGQ"
     gene            complement(44052..44798)
                     /locus_tag="OQQ75_000485"
     CDS             complement(44052..44798)
                     /locus_tag="OQQ75_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HCS1974929.1"
                     /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPMEN
                     VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKS
                     VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
                     QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVDPPPGSQL
                     WLGFSAHVLPEKYADLNDQIVSVLTQRVPD"
     gene            complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="OQQ75_000486"
     CDS             complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="OQQ75_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein GfcB"
                     /protein_id="HCS1974930.1"
                     /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQI
                     QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL
                     EVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
                     LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP"
     gene            complement(45546..45851)
                     /locus_tag="OQQ75_000487"
     CDS             complement(45546..45851)
                     /locus_tag="OQQ75_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-rich inner membrane protein GfcA"
                     /protein_id="HCS1974931.1"
                     /translation="MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTG
                     ATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR"
     gene            complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="OQQ75_000488"
     CDS             complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="OQQ75_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspH"
                     /protein_id="HCS1974932.1"
                     /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV
                     LIPGLRVEFCRVNGLRGPTAANVYLS"
     gene            46791..47003
                     /gene="cspG"
                     /locus_tag="OQQ75_000489"
     CDS             46791..47003
                     /gene="cspG"
                     /locus_tag="OQQ75_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspG"
                     /protein_id="HCS1974933.1"
                     /translation="MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRT
                     LNENQKVEFSIEQGQRGPAAANVVTL"
     gene            47014..47202
                     /locus_tag="OQQ75_000490"
     CDS             47014..47202
                     /locus_tag="OQQ75_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1974934.1"
                     /translation="MTQHLHFRCPCCHGSQYRTSAFDVTERNPLGAKCIFCKSTMITF
                     DNVTLQIRTDHAPLDFTK"
BASE COUNT        11626 a        11730 c        12413 g        11448 t
ORIGIN      
        1 tagcgatgtg cagtcgggta aagtgaatgc cagcgcgaca tttgtacttc attatgacta
       61 atacgtggaa cagattggcg ctcttgattt tcgccgtttt atcgctgctg gtggcgggtg
      121 aattgcgggc aggagtggtg gtcggcggaa cgcgatttat ctttccggca gacagagaat
      181 cgatatctat tttactgact aataccagtc aggaatcctg gctgattaac agtaaaatca
      241 accgcccaac gcgttgggcc ggggggaaag cgtcgacagt gccagcacca ttactggccg
      301 ctccgccact tattctcctg aagcccggta ctacaggcac gttgcgcttg ctgagaacgg
      361 aaagcgacat cttgcctgtg gatcgcgaaa cgctatttga gttaagcatt gccagcgtgc
      421 catccggcaa agttgaaaat cagagcgtaa aagtggcgat gcgctcggta tttaaactgt
      481 tctggcgacc cgaaggtttg ccgggcgacc cgctggaagc ttatcaacaa ttacgctgga
      541 cacggaattc gcagggtgta caactcacta acccaacgcc ttactacatt aacctgattc
      601 aggtgagcgt aaatggtaaa gcgttaagta atgcgggagt tgtgccgcct aaaagccagc
      661 gtcagacaag ctggtgtcag gcaatcgcac cgtgtcatgt cgcctggcgg gcgataaatg
      721 attacgacgg gttgagtgca aagaaggagc aaaatctgcc ctgaaacagg ttcggaaaac
      781 gtttgcgttt tttttgccgc aggtcaattc ccttttggtc cgaactcgca cataatacgt
      841 ccccggtttg cacaccggga atccaggaga gttcatgtac taccccttcg ttcgtaaagc
      901 ccttttccag ctcgatccag agcgcgctca tgagtttact tttcagcaat tacgccgtat
      961 tacaggaacg ccgtttgaag cactggtgcg gcagaaagtg cctgcgaaac ctgttaactg
     1021 catgggcctg acgtttaaaa atccgcttgg tctggcagcc ggtcttgata aagacgggga
     1081 gtgcattgac gcgttaggcg cgatgggatt tggatcgatc gagatcggta ccgtcacgcc
     1141 acgtccacag ccaggtaatg acaagccgcg tctctttcgt ctggtagatg ccgaaggttt
     1201 gatcaaccgt atgggcttta ataatcttgg cgttgataac ctcgtagaga acgtaaaaaa
     1261 ggcccattat gacggcgtcc tgggtattaa catcggcaaa aataaagata cgccagtgga
     1321 gcagggcaaa gatgactatc tgatttgtat ggaaaaaatc tatgcctatg cgggatatat
     1381 cgccatcaat atttcatcgc cgaatacccc aggattacgc acgctgcaat atggtgaagc
     1441 gctggatgat ctcttaaccg cgattaaaaa taagcaaaat gatttgcaag cgatgcacca
     1501 taaatatgtg ccgatcgcag tgaagatcgc gccggatctt tctgaagaag aattgatcca
     1561 ggttgccgat agtttagttc gccataatat tgatggcgtt attgcaacca ataccacact
     1621 cgatcgttct cttgttcagg gaatgaaaaa ttgcgatcaa accggtggct taagtggtcg
     1681 tccgcttcag ttaaaaagca ccgaaattat tcgccgcttg tcactggaat taaacggtcg
     1741 cttaccgatc atcggtgttg gcggcatcga ctcggttatc gctgcgcgtg aaaagattgc
     1801 tgcgggtgcc tcactggtgc aaatttattc tggttttatt tttaaaggtc cgccgctgat
     1861 taaagaaatc gttacccata tctaattatt tcttcgaatt cctctttata agataatcag
     1921 ggctttattt tcagccctgg ttgttttata ttcatcgctg ttgcttattt agacattttg
     1981 tacttttatt gttgaggtta ttaagcgaag cgacaatgga ttgtgttgct gcggttttat
     2041 agggtagggg agaggcagat gcgaattaaa ccagacgata actggcgttg gtattacgat
     2101 gaagagcacg atcgaatgat gctcgattta gccaatggta tgctatttcg ctcacgtttt
     2161 gcgcgcaaga tgttgactcc agatgccttt tctcccgcag gcttttgcgt tgacgacgcc
     2221 gcgctctatt tctcttttga agaaaagtgc cgcgatttta atttatctaa agaacaaaaa
     2281 gccgaactgg tgctgaatgt actggtagca attcgctatc tcaaaccgca aatgccgaaa
     2341 agctggcatt ttgtttccca tggtgaaatg tgggtgccca tgccgggcga tgcggcctgc
     2401 gtttggttga gcgatactca cgagcaggtc aatttgctgg tcgttgaatc tggcgaaaat
     2461 gccgcactat gcctgctggc acaaccctgc gttgttattg cgggtcgcgc gatgcagttg
     2521 ggcgacgcca ttaaaatcat gaacgacagg ctgaaaccgc aggttaatgt tgacagcttc
     2581 agcctcgaac aggcagtcta acgcgccaac ttaagtgcag tcttcggtac acagctacag
     2641 caaagaatgg tgccatcatc gcccattgct gattttttca gcggcgagac ttcgccttct
     2701 aaaatctgaa cacggcaact tccacaaatg cccgcgcggc aagaataagg gatacgaatt
     2761 ccctgatttt ctaattgctc cagcaacacc tgttggttat ttccacgaaa tgcctgtccc
     2821 tgccagtcaa tatctacatt tgcgtccggt tgttgcgtga tgttggcggt atcatcagcg
     2881 gcagctgcgc cgtaaatttt tgccggagcc gttgccagaa tttccacctc atcgccaacg
     2941 cgaatcacgc cgctattacg ggcaattaaa ttctgaccaa aatcgacatc gccgttatcc
     3001 tgggcagtgc ggaaagattg caatgttttt aatggttcgc ctgccggatg tttttgccct
     3061 ttttctgggc tgacggtggt gaaaatacag cggctacaag gtttaaccac atcaaacacc
     3121 acatcaccaa tgcgaatcac tttccagcga tcttcttccc aggctgacgc gccggaaacc
     3181 accagattgg ggcggaattg ctccattttt acactggccg gacaacgttg ttggagatca
     3241 cgtaacgagg cttcgttagc aagaaggtaa ggatagccat cagcaaatga cagaggtaca
     3301 gtgttgtggc gtttcacgcg ccgggtcatt tgtggcccca cccagcgtaa ttgcacttcg
     3361 cgggagaaaa atccacttag ccatttgttg atcgcgtctg gcgcaattcg cgcggtaaaa
     3421 tgtgtgcccc aaacttcggt tggtgcgtct tgtgtggcga aatcagcaaa acgaacatat
     3481 gcgctactgc catctggtgc ggtgagatgc aagccatcat gcacaggtga aggagtaaac
     3541 cgtaccatct ggggaaactg gcgagcggta ataaacgtac cgtcaggttc cgtgatcata
     3601 aagatgcgat cgaaggccag accactgaca tcagccagag catgtgtaag accaatgccg
     3661 cgcatcgatt taacaggatg aataaaaagc cgggttaatg tcgccacggt gcggtcctca
     3721 aatgaaaata agccctcaac tttatgacat gacgcgctta ttagctataa tgcgcaacaa
     3781 ttttcttagc gcctgtccca ttaggctatt ttatttgtca gtttggccct gggttgtgct
     3841 cgaaatcctc acgtacttgt gtacgctccg gtttctccgc gctgtccatg tccagactga
     3901 ctgcaacaat tacgcctact gcggtaggct cttagagtaa aagtgacgat atgaattctc
     3961 tgtttgccag tacggcccgt gggctggaag agctgttaaa aactgaactg gaaaacctgg
     4021 gggccgttga atgccaggtg gttcagggtg gggtccattt caagggcgac acacggcttg
     4081 tttaccagag cctgatgtgg agccgcctgg cctcgcgtat tatgttgccg ctgggcgagt
     4141 gtaaggttta cagcgattta gacctctatc tcggtgttca ggcgatcaac tggacagaga
     4201 tgtttaatcc tggcgcgacc ttcgctgtcc acttcagtgg tttgaatgac accatccgca
     4261 acagtcagta cggcgcgatg aaagtgaaag acgcgatcgt cgatgctttc acgcggaaaa
     4321 atctgccgcg tccaaatgtt gatcgcgatg cgccggatat ccgcgttaac gtctggctgc
     4381 ataaagaaac cgccagtatc gctcttgatc tgagtggtga tggtttacat ctgcgtggct
     4441 atcgcgatcg tgctggtatt gcgccgatca aagaaaccct ggcagccgct attgtgatgc
     4501 gatccggctg gcagcctgga acaccgctgc tcgatccgat gtgtggttcc ggtacgttgc
     4561 tgattgaagc ggcgatgctg gcgaccgatc gcgcacccgg cttgcaccgt gggcgttggg
     4621 gctttagcgg ctgggcgcag catgatgaag ctatctggca ggaagtgaaa gcggaagcgc
     4681 aaactcgcgc ccgtaaaggc ctggctgagt atagctctca tttttacggt tcggacagcg
     4741 acgcacgggt gattcaacgt gcacgcacta acgcccgtct tgcggggatt ggtgaactga
     4801 tcacctttga ggtgaaagat gtcgcgcaac tgaccaatcc gctgccgaaa gggccgtacg
     4861 gcacagtgtt gagcaacccg ccatacgggg aacgtctgga cagcgaaccg gcgctgattg
     4921 cgctgcatag cctgctgggt cggatcatga aaaaccagtt tggtggctgg aatctctctt
     4981 tgtttagtgc ctcgccggat ctgctaagct gcttgcagct gcgtgcagac aaacagtaca
     5041 aggcgaaaaa cggcccgctg gactgcgtac agaaaaatta ccacgttgcc gaaagcactc
     5101 cagacagcaa accggcgatg gtagcggaag actacgccaa ccgcctgcgt aagaacctca
     5161 aaaaattcga gaagtgggct cgccaggaag gaattgaatg ttaccgcctg tatgacgccg
     5221 atctgccgga atataacgtt gccgttgacc gttattccga ctgggtggtg gtgcaggagt
     5281 atgcaccgcc aaaaactatt gatgctcaca aagcgcgtca gcgtctgttc gatattatcg
     5341 ctgcaaccat ttcggtactg gggattgcgc caaacaaact ggtgctgaaa acccgtgaac
     5401 gccagaaggg caaaaaccag taccagaaac tgggcgagaa gggcgagttt cttgaagtta
     5461 ccgaatataa cgctcacttg tgggtgaacc tgacggatta tctcgatact ggtctgttcc
     5521 tcgatcaccg tatcgcccgc cgtatgctcg gtcagatgag caaaggcaaa gatttcctca
     5581 acctgttctc ttataccggt agcgccaccg tgcatgcggg attaggcggc gcgctcagca
     5641 ccaccaccgt ggatatgtcg cgtacttatc tggagtgggc agaacgcaac ctgcgtctga
     5701 atggcctaac cgggcgtgcg catcgcctga ttcaggccga ttgcctggcg tggctgcgtg
     5761 aggcaaatga acagtttgat ctgatcttta tcgatccgcc aaccttctct aactcaaaac
     5821 gaatggaaga tgcgtttgat gttcagcgcg atcatctggc gctgatgaaa gatttgaaac
     5881 gtctgctgcg tgcaggtggg acgatcatgt tctcgaacaa caaacgtggc ttccgtatgg
     5941 atctcgacgg cctggcaaaa ctgggactga aagcacaaga aattacgcaa aaaacgctct
     6001 cccaggattt cgcccgtaac cgccagatcc acaactgctg gctgattacc gcagcctgaa
     6061 aggaatagta atgtcattaa tcagtatgca tggcgcatgg ctgtcgttca gcgacgcgcc
     6121 gcttctcgat aacgcagaac tgcatatcga agataacgaa cgtgtttgtc tggtgggccg
     6181 caacggcgcg ggcaaatcga cgttaatgaa aatcctcaac cgtgaacaag ggctggatga
     6241 cggtcgcatt atttacgagc aagatttgat tgtagctcgt ctgcaacagg atccgccgcg
     6301 taacgttgag ggtagcgttt atgatttcgt tgccgaaggc attgaagaac aagcggaata
     6361 tctgaaacgc tatcacgata tttcgcgcct ggtgatgaac gacccgagcg agaaaaatct
     6421 caacgaactg gcgaaggttc aggaacagtt ggatcaccac aacctgtggc agctggaaaa
     6481 ccgcatcaac gaagtgctgg cgcaactggg gttagatcct aatgttgcgc tgtcgtcgct
     6541 ttccggcggc tggttgcgta aagcggcatt aggacgcgcg ctggtgagta atccgcgcgt
     6601 gctgttgctt gatgaaccga caaaccacct ggatattgaa accatcgact ggctggaagg
     6661 gttccttaaa accttcaatg ggacgattat tttcatctcc cacgaccgtt cgtttatccg
     6721 caatatggcg acgcgcattg ttgatctcga tcgcggcaag ctggtgacct atccagggaa
     6781 ttacgaccag tacctgcttg aaaaagaaga agccctgcgc gtggaagaac tacaaaatgc
     6841 cgagttcgat cgcaaactgg cgcaggaaga ggtgtggatc cgccagggga tcaaagcacg
     6901 ccgtacccgt aatgaaggcc gcgtacgcgc cctgaaagca atgcgtcgcg agcgtggtga
     6961 acgtcgcgaa gtgatgggta ccgcaaagat gcaggtggaa gaggccagcc gctccggtaa
     7021 gatcgttttc gaaatggaag acgtttgcta ccaggttgac ggtaagcaac tggtgaaaga
     7081 tttttcggcc caggttctac gtggcgacaa aattgtcctg attggtccga atgggtgcgg
     7141 caaaaccacg ctgctgaaac tgatgctcgg tcagcttcaa gcggacagcg ggcgtattca
     7201 cgttggcacc aaactggaag tggcttattt cgatcagcac cgcgcggaac tggatcccga
     7261 taaaacggtg atggataaca ttgccgaagg taagcaagag gtgatggtta acggcaagcc
     7321 acgccacgta ttgagctatt tgcaggactt tctgttccat ccgaaacggg cgatgacgcc
     7381 ggtacgtgcg ctttctggcg gtgagcggaa ccgcttgctg ctggcgcgtt tgttcctcaa
     7441 accaagcaac ttattgattc ttgacgaacc gaccaacgat cttgatgtcg aaacgctgga
     7501 actgctggaa gaactgatcg acagctatca gggcacggta ttgctggtta gccacgatcg
     7561 tcagtttgtc gataacaccg ttacagaatg ttggatcttc gaaggcggcg gtaaaattgg
     7621 tcgttatgtc ggcggttatc atgatgcccg tggtcagcaa gagcagtatg tggcgctcaa
     7681 acagcctgcg gtgaaaaaaa ccgaagaagc cgccgcggca aaagcagaaa ctgtaaaacg
     7741 cagcagtagc aaactaagct ataaattgca gcgcgaactg gagcagctac cgcaattgct
     7801 cgaagatctg gaggcgaagc tggaagccct acagacgcag gtggcggatg cttccttctt
     7861 cagtcagcca catgagcaga cacaaaaagt gctcgccgat atggctgctg cagagcagga
     7921 gctggagcaa gcctttgaac gctgggagta tcttgaagcg ttaaaaaatg gtggctgatc
     7981 gcaaaatagt cgatttaaac agagacagct gacaacggta aaattgcctg atgaactggg
     8041 tttatcaggc atgaaaacca acactttgtt agtcatctgt aaaatagcgc atcattaagg
     8101 agtaccaatg tgcgaacatc atcatgccgc gaagcacatc ctgtgctcgc agtgtgacat
     8161 gctggtggcg ttaccgcgcc ttgagcatgg tcagaaagcg gcatgtcccc ggtgtggcac
     8221 aacgttaacc gtggcgtggg atgcccctcg gcagcgtccg accgcctatg cgttggctgc
     8281 actgttcatg ctgttgctgt ccaacttgtt tccttttgtg aatatgaacg ttgcaggagt
     8341 taccagtgaa attacattac tggaaattcc cggcgtgctt ttttctgagg actacgccag
     8401 cctcggcacc tttttcctgt tgtttgtgca actggttccc gcgttttgtc tgataaccat
     8461 tctgttactg gtgaatcgcg cggaattacc ggtccgttta aaagagcaac tggcacgggt
     8521 gctttttcaa ctcaaaacct ggggaatggc ggagattttc ctcgcgggtg tgctggtcag
     8581 tttcgttaaa ctgatggctt acggcagcat tggggtaggc agcagctttc tcccctggtg
     8641 tttattttgt gtcctgcaac tgcgcgcttt tcagtgcgtt gatcgtcgct ggttatggga
     8701 cgacatcgcc ccgatgccag aactgcgcca gccgctaaaa ccaggcgtca cggggatacg
     8761 tcaggggctg cgttcgtgct cctgttgtac ggcaatcctt cctgctgatg aacccgtgtg
     8821 cccgcgttgt agtaccaaag ggtacgttcg gcgtagaaac agcctgcagt ggacactcgc
     8881 gctgcttgta acgtccatca tgctgtatct tccggctaat attttgccca tcatggtgac
     8941 ggatttatta ggctcgaaga tgccgtcgac aattctcgct ggggtcattc tgttatggag
     9001 cgaaggctct tatcccgtcg ctgcggtgat ctttctggcc agtattatgg tgccaacgtt
     9061 aaagatgatc gccatcgcgt ggctgtgttg ggatgccaaa gggcatggca agcgcgacag
     9121 tgaaagaatg catttgattt atgaagttgt tgagtttgta ggccgctggt cgatgattga
     9181 cgttttcgtt atcgcggtgc tctcggcgct ggtgcgtatg ggaggtttaa tgagtattta
     9241 tccggcaatg ggtgcattaa tgtttgcttt agtcgtcata atgacaatgt tttctgctat
     9301 gacgtttgac ccgcgtttgt cgtgggatcg tcaacctgaa tcagagcatg aggagtcctg
     9361 acagtatgga atctaataat ggggaagcca aaatccagaa agtgaagaac tggtctcccg
     9421 tgtggatatt tcctatcgtc acggcgctca ttggggcctg ggttctattt tatcattaca
     9481 gccatcaggg accggaagtg accctgatca ccgcgaatgc ggaaggaatt gaaggtggca
     9541 aaaccaccat taaaagccgt agcgttgacg tcggcgtggt tgaaagcgcc acactggctg
     9601 atgatttgac gcacgttgaa atcaaagcgc ggctgaattc cggtatggaa aaattgctgc
     9661 ataaagacac cgtcttttgg gtggtgaaac cgcagattgg tcgcgaaggg attagcggcc
     9721 tgggaacgct gctgtctgga gtttatatcg aactgcagcc aggcgcgaaa ggcagcaaaa
     9781 tggataaata cgatttgctg gactcgccac cgttggcccc gcctgatgcg aaaggtatcc
     9841 gtgtgattct cgatagcaaa aaagccgggc agctctcgcc aggagatccg gtgctgttcc
     9901 gtggctatcg ggtaggttcg gttgaaacca gcaccttcga tacgcaaaaa cgcaatatca
     9961 gttatcaact gttcatcaat gcaccttatg accgactggt gaccagcaat gttcgcttct
    10021 ggaaagatag tggcattgcg gttgatctga cgtcagcggg gatgcgtgtg gagatgggct
    10081 cattgacaac gctgcttagt ggcggtgtta gctttgatgt gccggaaggt ctggatttag
    10141 ggcagccagt ggcaccgaaa acagctttcg ttttgtatga tgatcagaag agcattcagg
    10201 attcgttgta caccgatcac attgattatc tgatgttctt taaagattcg gtacgcggtc
    10261 tgcaaccggg agctccggta gaattccggg gtattcgcct gggtaccgta agcaaagtgc
    10321 cattctttgc gccgaatatg cgtcagacat ttaacgatga ttaccgtatt ccggtactga
    10381 ttcgtatcga gccagagcgg ctgaaaatgc agcttggcga aaatacggat gttgttgagc
    10441 accttggcga attgttgaaa cgtggtttac gcggatcgct gaaaaccgga aacctggtca
    10501 ctggtgcact gtatgttgat ctcgatttct atccaaatac gcctgcaata accggtattc
    10561 gtgaatttaa tggttatcag attatcccga ctgttagcgg cggcctggcg caaatccagc
    10621 aacgactgat ggaagcgttg gataagatca acaaactgcc attgaatccg atgattgaac
    10681 aggcaaccag tacgctttct gaaagtcagc gcacaatgaa aaacctgcaa acgacgctgg
    10741 atagcatgaa caagatcctc gctagccagt cgatgcagca gttgccgacg gatatgcagt
    10801 caacgttgcg tgaattgaat cgcagcatgc agggcttcca gcctggctcc gcagcctaca
    10861 acaagatggt ggcggatatg cagcgccttg atcaggtgtt gcgagaactg caaccggtgc
    10921 tgaaaacgct caatgagaag agtaacgcgc tggtatttga agcgaaggac aaaaaagatc
    10981 cagagccgaa gagggcgaaa caatgaaaaa gtggctagtg acgattgcag cactgtggct
    11041 ggccggatgc agctccggcg aaattaataa aaactattac cagttacctg tggtgcagag
    11101 cggtacacaa agtaccgcca gccagggcaa tcgtctgtta tgggtagagc aggtcactgt
    11161 tcctgactat ctggcgggga atggtgtggt ttatcaaacc agtgatgtga agtatgtgat
    11221 tgccaacaac aacttgtggg ccagcccgtt ggatcaacag ttgcgcaaca ccctggttgc
    11281 caacctgagt acgcaactgc ccggctgggt ggttgcctcc cagcctctgg gaagcgtcca
    11341 ggacacgctc aatgttaccg taacggagtt taacggtcgc tatgatggca aggtcattgt
    11401 cagtggtgag tggctgttga accaccaggg acaactgatc aaacgtccgt tccgtctgga
    11461 aggagtgcaa actcaggatg gttacgatga gatggttaaa gtgctggccg gtgtctggag
    11521 tcaggaagcc gcttctattg cacaagagat aaagcgtcta ccttaattat aaagatttgt
    11581 aagtataacc gtctccggta tgttgcctga ggcggttttt ttgtttctaa cgtgcggaaa
    11641 aatttgttcc tcttcacatt ttttgtacaa ccgacatgcc cgtgtagctc acaaatatga
    11701 cagtggcgtg aattttgcgc attgacggca gttatgattc gcggtattgc ttaactgtga
    11761 ttgcacattt agtaatcact gttttctttt ccaccagaaa ccagtatgag ggaaacgagg
    11821 catgaagaga caaaaacgag atcgcctgga acgggcacat caacgtggtt atcaggccgg
    11881 catcgccgga cgctcaaaag aaatgtgtcc ctatcagacg ctgaatcaaa ggtcacaatg
    11941 gctgggaggc tggcgagaag ccatggcgga cagggtagta atggcctgat tctgtctctt
    12001 taaaaagaaa cctccgcatt gcggaggttt cgccttttga tactctgtct gatgataatc
    12061 agaaggcaga cgtatcctgg aacagaccga ctttcaggtc gctggcggta tagatcagac
    12121 gaccatcaac cagcacttcg ccatctgcca gacccataat cagacgacga ttaacaatgc
    12181 gtttaaagtg aatacggtag gtcacttttt tcgctgtcgg cagtacctga ccagtgaatt
    12241 tcacttcgcc aacgcccagc gcgcggcctt taccttcgcc gcccagccag ccgaggtaga
    12301 accctactag ctgccacatt gcgtccaggc ccaggcatcc cggcataacc ggatcgccaa
    12361 tgaagtggca tccgaagaac cacagatccg gattgatatc cagttctgct tcaacatacc
    12421 ctttgtcgaa gttaccaccc gtttcggtca ttttgaccac acggtccatc atcagcatgt
    12481 tcggtgctgg caattgcggg cctttagcgc caaacagttc accgcgacca gaggcaagaa
    12541 ggtcttcttt tgtataggat tcgcgtttat ctaccatgtt ctctgtaagc cttattttat
    12601 tgaagcacgc aggatagcta acacgtgtac gctgaacaag tccgatcagt tcggaataaa
    12661 ccagttcagc caacgtaatg gccatggaaa acggtgacgt ccttcctgtt gcgatgcttg
    12721 cgcgatacgt tcctggatgg tttgcatcag cgtcgtttgg ccttcgccat cccacaccag
    12781 atttaataat aacggcagtg cgtcagtcac atcgtctact gcccagatgg tgaatttgcc
    12841 ttcttctacc gctttcacca gttcactgtg aagacttaaa tggcgaacgt tagctgtggg
    12901 gataatgaca ccttgtttcc cggttaactc acgttgctgg caaatagcaa agaagccttc
    12961 gattttctca tttaaaccac cgaccggctg ggcgcgaccg aactgatcga ctgaacctgt
    13021 gatagcgata ctctgattca ccggcacatc ggcgagggcg cttatcaggg cgcagagttc
    13081 agccatcgag gcactatctc catcaacttc actgtatgac tgctcaaatg tcagcgatgc
    13141 tgagaagggg atctgttgct caagctgtag ttccgacatc aggaacgctt gcatgatcat
    13201 catccctttc gcatggatat tgccgccaag ttccgctttg cgttcgatgt cggtgaattc
    13261 accatcgcca atatgcacaa cgcagctaat gcgagaaggt tcgccaaaag cgcgtggatg
    13321 acccggaaat tcaatgaccg aaagggcgtt aatttgcccg atgcgttcgc cttcggtttc
    13381 aatcaggatt tgctcctgaa ggatctcatc ctgcatacgt tcagcgagga aaccttcgcg
    13441 ccattcacgc tgctgcagca ttaagtttag ctgctcgccg gagaaggtgt cgccatcaca
    13501 cagggaggcg acctctttac actggcggag gatccactgc gggctaagcg gaagtgtttc
    13561 ttgttcaccg gtgtagcgtg ctgcttcgcg gataagtacc ggccaggcat ccgctcccgg
    13621 ggcaggtaag tgattatgtc tggcggtaaa tgtcacccag cgacaccact ggcttactga
    13681 ctccgcatcg acaatctgca gagtatcttc aaattcgcta taaatagcct gctctgaaag
    13741 ctctggctcc atctcctgga aatcagccaa tgattcgcgt tcgcctacca gaatgacttt
    13801 cagcttcaat ggcatcgaag gcacagagac ggggagaggg cgcgactcat caaacgcaac
    13861 ccagtcaaaa cgctcgcggt taacgatatt tttcagccgc atccacagca gaggttgcgc
    13921 cagcagtgta cgcaaagaga tgatgagaat accgccattt gcctgatgca ccagaccagg
    13981 ctgcagggta atgtcgccat taaactggcg caggcagcca aagagttgct ccgcttctac
    14041 ccagtcggca gcgacaactt gcgttaaagt cgcaaaatta tcatctgcac tcactgcgtg
    14101 acgtaagcgg atggagtggc cggaaacctc atagtgatcg cccaccagtt ggcctgcatc
    14161 gctttgtagc gtacgcgcgg catcggcaat aagattcaga tactcagact cttccggggc
    14221 cttagccagc ataaaagagg aggatgctcg cgtatgcagc aactgctcca gcgcaaattg
    14281 cagccgcggt tgagtatcac tgaataaagg atcgttttcg tcaatcaaat gtggctgagc
    14341 aaatatttcc tgatagctat cggtatcagg aaccaggtca cgccatgcaa gtttcgtaat
    14401 ggtcaaagtt gatgtttttt agtctgttgt caaagccgcg attataccgt aaccggcact
    14461 acagcacacg tagaaagcac cgacaatact cctggcatgg gcgttaaagc tcacaggatg
    14521 gagattcttt tcttcactgg cctaaaaagc tgatattctg taaagagtta cacggtaaca
    14581 ttgagatcgc tatgaaatat caacaacttg aaaatcttga aagcggttgg aaatggaagt
    14641 atctggtgaa gaagcatcgc gaaggggagt taattacccg ttacatagaa gccagtgccg
    14701 cccaggaagc cgtcgatgtg ttgctctcgc tggaaaatga acccgtgctg gtaaatggct
    14761 ggattgacaa gcatatgaat ccggaactgg tcaatcgcat gaagcaaacc attcgggcca
    14821 gacggaagcg ccattttaat gcggaacacc agcatacgcg caaaaagtcg atcgatctgg
    14881 aatttattgt ctggcaacgt ctggctggtc ttgcgcagcg tcgcggtaaa acgctttctg
    14941 aaacgattgt tcagctgatt gaagatgcgg aaaacaaaga gaaatacgcg aataaaatgt
    15001 cttctctgaa gctggatctg caggcattgc tgggtaagga ataactgacg aaagtcagtt
    15061 caatttacta aaggcaaaaa aaaccccgca gcagcggggt ttttctacca gacgataact
    15121 taagcctgcg gctgagttac aacgtctttg atacctttaa cttcgatctc tacgcgacga
    15181 tccggagcca ggcagtcgat cagtgcagca cgctgtttca cgttgtcaca ggtgttgcca
    15241 gtaaccgggt tggattcgcc cataccacgt gcggagatct tgtctgccgg gatacctttg
    15301 gagatcaggt aatcaacaac agactgagca cggcgctcgg acagaccctg gttgtaagcg
    15361 tcagaaccga tgcggtcggt gtaacccaga acaactacgg aaccgtcttt cggatccagg
    15421 ttgctcagct ggctgtacag ctgatccaga gcagcctgac cttccggttt cagggttgct
    15481 ttgttgaagt tgaacagaac gtcagacttc agagtgaagt gcttggtctg tacttccggt
    15541 gccggagctg gagccggagc aactactgga gctgcttcgc cctgaccgaa acggtaggaa
    15601 acacccaagc tcagcatgcc gttgtccgga cgagtgccga tggtgtgtgc gtcaccgatg
    15661 ttgttggtcc actggtattc cagacgggta gcgatttcag gagtgatcgc gtactcaaca
    15721 ccgccagcga agaccggaga aacgccggtg tcgtggtttt taccataaac gttggattta
    15781 gtgtctgcac gccataccat accacccaga cgagtgtaga tgtccaggtc gtcagtgatt
    15841 gggtaaccca gtttagcggt cagttgaacg ccctgagctt tgtatgcacc gttttcaacg
    15901 ctgcctttgt acggcatacg acctaaccag tcgtaaccca tttcaaagcc aacatacggg
    15961 ttaacctggt aaccaccaaa agcaccagcg cccagttggt tttcatgggt cgggccattg
    16021 ttgttgatga aaccagtgtc atggtactgg gaccagccca gtttagcacc agtgtaccag
    16081 gtgttatctt tcggagcggc ctgcgctacg gtagcgaaac cagccagtgc cactgcaatc
    16141 gcgatagctg tctttttcat tttttgcgcc tcgttatcat ccaaaatacg ccatgaatat
    16201 ctccaacgag ataacacggt taaatccttc accgggggat ctgctcaata ttaactctac
    16261 cgatatcttc ggcttatgcc gagcacccct ggcgatgtaa agtctacaac gtagttgaaa
    16321 acttacaagt gtgaactccg tcaggcatat gaaaaaaaag tcttgtataa ggtatgttta
    16381 atcttttttg tcagcgacaa tttacagaag aaaatcgcgg aaaccgcttc agacaagcct
    16441 ccgcaaggaa aattagtcac gactgaaagc attggctggg cgacaaaaaa agttccagga
    16501 ttaatcctaa atttacttaa tgatacaaat tagagtgaat ttttagcccg gaaagttgtc
    16561 tcgtggcgtg agaggatgcg cttaccggac gcataataaa ccccatagcg ttaccttcat
    16621 ttgccgcatc aacaagttca gcatgctctt cttcagtcaa atcatctgcc aaccaaccga
    16681 tcaccacact gtaattgccc gtgcgtaaag cgcgaaccat tgactccaca gtgtggcaag
    16741 gggagagctg gctaatctgc attactttcg ttaagggtag cccagatgcc tgaacccatt
    16801 cccgactcag tttttgttgc ggtgttaacc agagttgcca gcgcgattgc tgaccgagtt
    16861 gctgtaacaa tggcaacagt agaagttgcg tcatcatggg ctgatcttcg cgatagacaa
    16921 cttcactgat aagcccggct gtagtgtttt ccgtagagac acgcgcaatt ttacttgctg
    16981 cggatgagaa cgacgaagaa cgatgtgcat agcctgaagt gtacataatc aatccagccc
    17041 ctgtgagtta ctgtatgaat gtacagtaca tccagtgaca acaaagatca accctatttt
    17101 cggaaagagc ctcgcaaatt ttttcgttgg tgacgggaaa acataaatta atcttgcccc
    17161 ttaagaataa gttgcctatt ttcgtagtta acggatccgt taatgtgaat cattctttta
    17221 tgttatgatt ttaaaaggaa ttttatgaaa agcctctcct ataagcggat ctataaatca
    17281 caagaatacc tggcaatgtt gggcacaatt gaataccgat cattgtttgg cagttacagc
    17341 ctgaccgttg acgacacggt gtttgcgatg gtttctgatg gtgagttgta tcttcgggct
    17401 tgtgagcaaa gtgcacagta ctgtgtaaaa catccgcctg tctggctgac atataaaaag
    17461 tgtggccgat ccgttaccct taattactat cgggttgatg aaagtctatg gcgaaatcaa
    17521 ctgaagctgg tgcgtctgtc gaaatattct ctcgatgcag cgctgaaaga gaaaagcacg
    17581 cgcaataccc gggaaagact gaaagatttg cccaatatgt cttttcatct ggaagcgatt
    17641 ctcggggagg tggggattaa ggatgtacgg gcgttacgta tacttggggc aaaaatgtgt
    17701 tggttgcgac tgcggcagca aaacagtctg gtgacagaaa agattctgtt tatgcttgaa
    17761 ggtgccatta tcggcattca tgaagctgcg ctcccggtgg cacgccgcca ggagcttgca
    17821 gaatgggctg actcacttac gccgaaacag gagtttcctg cggaacttga gtaatctggc
    17881 gttgcagacg accaatctca ggcagtaatg caatcaataa tccaacttgt tgtacgacca
    17941 gaggttcttt gctgtctgcc cgtggttcaa gttgctgcat ccgctgtttc aggctagcta
    18001 atgcctcatt gacgcgttct tcatcagcag gttgatgatg taacgcgtca tcaacatagc
    18061 aaactgcgtc atcaagaaac gccagaattt caggattagt taactgctcc cggtgagcac
    18121 cgagggctga gatatagctg gtaaacgtat ggttaaggca cagcaaccga aacgcggctt
    18181 cgcgaatttg cggggtaacg ttcggctcgc tggacatatt tgataccacc gacgccagct
    18241 cagcatcacg gttgtgtgca tcgcggcggg caatacgata cgccagacgg ttatcacgcc
    18301 cctgatggta ttgctccagt atggcatcga gataccgaca gttggcctct gtggcgcgtt
    18361 cgagcatgcg cggcaaattg cgaaactgcc agtcaggcca gatgtagctc actgccgccc
    18421 acgcaatggc acaaccaatc agcgtatcga ttacgcgagg taacgctact tcaaaacctt
    18481 cacccagtaa gttaaaacac agtagcacca aaagtgtgat gaacatcgtt gcatgagcgt
    18541 attgcacgtt acggaaggca aaaaagagca cgccggtaat aaccagcagc accagctgcc
    18601 cttccagtga tggcacaaac cacagcacag gaatgccaat ggcgatacct accagcgtac
    18661 caataatcct taacttcagg cggtggcgcg tggcgttata gtttggctgg cagacaaaca
    18721 aacttgtcag caagatccaa aacccgtgat gcattccggt tatttgaatg atggcgtagc
    18781 cgaagcacaa caccagcgac attcttaccg catgacggaa gagggcggat tccggcgtga
    18841 agtgacggct aagacgcagc cagatatcac tcaacccgtg cgggctgtca tcagcgagct
    18901 cattttcgtc attattatgg ggtagtgcct gggcctgttc tgattcaatt gttgccagtt
    18961 gggcatcaat ggcgcgtaaa ttgttcagca aaaatcccag tgttttgagt aaatcggcgg
    19021 gtgcgccgtt atcgcgcatc cgctccagcg cagcatcaat atgcgtaaaa gcgcgctcaa
    19081 aatgcggatc atgttgataa ggctgacgca acaaaataca gcgtgacagt tgctggcacg
    19141 cctggccctg catcgacatc agccgctgaa aacggaacag cacgtcgctg tggcgaaaat
    19201 gttcacgcaa tgtttgatac tgaatatgag aagagctggc acgctcgtga atatcctgtg
    19261 cgacaaagta ataatgcagc gtgcgacgcg ttccccgttg accacgatcg ccacgtaagc
    19321 gggtcagcag cgagagtttc gtctgattca atgtcgccat cagcagaccg ttggcgagag
    19381 ccaaatcgta cagcggtgcc tggctttcat cttcaatatc aggatcaaac atgcgcgact
    19441 tgagctcaag ataacgcgcc agttgttcat agcaacgcgc caggttgtcc tgcagcgggc
    19501 ggaccgggaa cagcagatga ccaataagtg tcaggacgtt gtaccagacg gcaccggcca
    19561 gcagatacat cggctgctga taccagtgct catacagtga tgttcccaac atagtgtaaa
    19621 tggcgatcag caatgcaccg aaggcaattg ttgcatagcg ttgacccaga ccgccgagca
    19681 aaatgaagcc gctggtagag agcgttaagc caatcgcaaa tagccagggc cagggaaaca
    19741 gcaattctac tgaggccgag gcgataaaaa agcagaacag cgtaatgatg aggttacgca
    19801 aacgtcccgc cagtcggtca tcgagatcgg tcagcgccgc tgccaccatc cccagcgtta
    19861 gcggaatcgt cagttttaca tcacccagcc accacggaaa cgctgtggtt ccacaaagcg
    19921 caataaaaat acgcgcgtaa tacagccagg cgctgttcca ggtatagcgt ttgagcaaag
    19981 gacttagcat aaaggccata ttagtggatt attcaaaacg acgacgtgca ttggcttcac
    20041 gcgcagcttg cgctgtttct accgatacca cgcgacgacc aaccggccat agtgcaatag
    20101 cggcaatttt aaagttcgca atgccgacag gaatgccaat gattgaaata cattgtgcga
    20161 tgcccgttgc aatgtgcatc aggcataacc accagccaaa gaaaatcagc cagaaaatat
    20221 tcaataccgt accgccagta ttcagcagca catttttgcc agccgggttc agttcatcga
    20281 catgaatagc ttcattgcca taaggcacca gagacagttt agtgatctcc cagcaggatc
    20341 gtgtcagcgg taaggtaaaa atcagcacaa tactgaccag agtcgccaac agccagccca
    20401 gagtggtggc aaatccgcca agcacaaagt tcagaatgtt caaaacggta cgcataaaac
    20461 ctcgctttac tgtggttttc agtaatgggc ggcaattgta acgttttttt gggctggagc
    20521 acgttttctc tgacggttac actgataaga aataatttcg tgtggatcta cagagtcatg
    20581 gaactgaaag cgacaacgct tggaaaacgt ctggcacagc acccttacga tcgggcggtg
    20641 atcctcaatg ccgggattaa agtctccggc gatcgccacg aataccttat tcctttcaat
    20701 caattactgg cgattcactg taagcgtggt ctggtatggg gcgagctgga atttgtactg
    20761 ccggacgaaa aagtggtgcg tctgcacggc accgaatggg gcgagacgca gcgtttttac
    20821 catcatcttg atgctcactg gcggcggtgg agtggcgaga tgagcgaaat tgcgtctggt
    20881 gttttacgcc agcaactgga tttgattgcc acgcgcactg gagaaaataa atggctgacg
    20941 cgtgagcaaa cctctggcgt tcagcaacaa atccgccagg ctttgtcggc gttgccgttg
    21001 ccggttaacc gactggaaga attcgataac tgccgtgagg cgtggcgtaa atgtcaggcc
    21061 tggttgaaag atattgaaag cgctcggttg cagcataacc aggcgtatac cgaagccatg
    21121 cttaccgagt atgcggattt tttccgccag gtcgagtctt caccgctgaa tccggcgcag
    21181 gcccgggcag tcgttaatgg cgagcattct ctgttagtgc tggcaggtgc aggaagcgga
    21241 aaaacgtcgg tgctggtggc ccgtgcaggc tggttgctgg cacgtggtga agcgtcccct
    21301 gagcaaattt tattgctggc gtttggtcgc aaagccgctg aagagatgga cgagcggatt
    21361 cgcgaacggc tacataccga agacattacc gcacgcacgt ttcatgcgct ggcgctgcat
    21421 attattcagc agggcagcaa aaaagttccg atagtcagca aactggaaaa tgataccgct
    21481 gcccgtcatg aactctttat tgctgagtgg cgcaagcaat gcagcgaaaa gaaagcgcag
    21541 gcgaagggct ggcggcaatg gctgacggaa gaaatgcagt ggtcagtgcc agaaggtaac
    21601 ttctgggatg atgaaaaatt acagcgtcgc cttgcctctc gcctcgatcg ctgggtaagt
    21661 ctgatgcgga tgcacggtgg tgcacaggca gaaatgattg ccagtgcacc cgaagagatt
    21721 cgcgatctgt tcagtaaacg tatcaagttg atggccccgt tattaaaagc ctggaaaggt
    21781 gcgctgaagg cagaaaacgc tgtcgatttt tcgggcctta ttcatcaggc gattgtgatt
    21841 ctggagaaag gtcgctttat cagcccgtgg aagcatattc tggttgatga atttcaggat
    21901 atctcgccgc agcgggcagc gttgttagcg gcattacgca agcaaaacag tcagacgacg
    21961 ttgttcgctg ttggtgatga ctggcaggcg atttaccgat tcagcggtgc gcaaatgtcg
    22021 ctcaccaccg ctttccatga aaactttggt gaaggcgaac gttgtgattt agacacgact
    22081 taccgtttta acagtcgtat cggtaaggtg gcaaaccgtt ttattcagca gaacccaggc
    22141 cagctgaaaa agccgctaaa cagcttaacc aatggagaca aaaaagccgt cacgttattg
    22201 gatgagagtc aacttgacgc tttgctggat aagctctctg gttatgccaa accggaagag
    22261 cgcattctga tcctggcgcg ttaccatcac atgaggcctg ccagcctgga aaaagcggca
    22321 acacgctggc cgaagttgca aatcgacttt atgaccattc atgccagcaa agggcaacag
    22381 gcggattacg tcatcatcgt tggcttgcag gagggaagtg atggttttcc ggctgcggcg
    22441 cgggagtcga ttatggaaga ggcgctactg ccaccggttg aggatttccc ggacgctgaa
    22501 gaacggcggt taatgtacgt ggcgctgacc cgggcacgcc atcgggtatg ggcactgttt
    22561 aacaaagaga atccctctcc ctttgttgaa atactgaaaa atctggatgt gccggtggcg
    22621 agaaaaccgt aagaaacagg tggcgtttgc cacctgtgca atattacttc agacggtccg
    22681 cgagataacg ctgataatcg gggatcagaa tatcgaccgc gtcgttgaaa tgcggcgact
    22741 ggattatgaa gtctgccgtt gccacgttgg tggcgaccgg aatgttccat accgtcgcca
    22801 gacgcagcaa ggctttcacg tcaggatcgt gcggcacggc atttagtgga tcccagaaga
    22861 aaatcaatac atcaattttc ccttctgaga tcaatgcgcc aacctgctgg tcacccccca
    22921 ttgggccact caacatcgcg ttgacgttca tgccggtcgc gcgggaaatt aagttaccgg
    22981 tagtgcctgt tgcatacagt acgtgttgtt ccagtaacgg ttgatgccgt tccacccagc
    23041 tcatcagcat ttgtttgcag tgatcgtgtg ccaccagcgc aatatgtttc cgcgcaggta
    23101 aagtgcgagt cgtcagttcc ataatgtaca tccgtagtca actttcctac agattactgt
    23161 aagcacttat cgctgcaaga taaagaccga aaaagcctgc gcacaggcac aaaaatctca
    23221 ggaagatggt tgtttttccg cccactgcag gaaagtattt cgcgtttgtg ggtcagccag
    23281 tttaaaccaa tacttcagcc gttgttctgt gagcacctga gactgcggtg gaatagcatc
    23341 cagctcggaa acacccgaaa gcagcgtact gtcatctgcc atcatcgtgg caaattgcgg
    23401 tagtgaagcg cgtttcgcgg atttgttata gcgttcaacc tcgacctcat aatcaatcgt
    23461 ttttgccgtt gaggtaatgg cgagaatatc cagctttacc ggaatcggcg tcgcatcgcc
    23521 atccaacaat tcaaggcgcg gcgcggcatc aaaatggtta gcttcccgct cattctccag
    23581 gcgaggcagg cgaaaattga cctggttgat gagctgggta ttaaaactga ccactagcgg
    23641 tggggagata tacagccgtt cttcactatt ggaaagatga atcgtcttct caacgcgaaa
    23701 cactaactga tgcggtccat tatccagttc aatgctgtcc gcaccgcgca gcagagagct
    23761 ggaaaccttc ttgccgtcga gtaccagaag atcgacatcg gttgaaagcc gcagcgtggt
    23821 ggcaaaaacg gataccggca aacataatgc aatcaaggtg gtcacgatgc cggttttcat
    23881 aggtagctcc tgtcaaaaga ccgcccgaat aataatgtgt caaaattttt ctttaatcat
    23941 acttactaac atatagacat atttcccgct tttgctctca ttcattcgta ttagctgcat
    24001 ggttggcatg tcggctttgt cgtacacttt gttaaacagt ctggaggaaa taatgaaaga
    24061 aaccgatatt gcaggcattt taacgtccac tcacaccatt gcgctggtgg gggcaagcga
    24121 caaacccgat cgtcccagct atcgcgtgat gaaatatcta ctcgaccagg ggtatcatgt
    24181 cattccggtt tcgccaaaag ttgccggcaa aacgctgctg ggccagcagg ggtatggcac
    24241 gctggcagac gttccggaaa aggtcgatat ggtcgatgtt ttccgtaatt cagaagcggc
    24301 gtggggcgtg gcacaggaag ctattgccat tggcgcgaaa accctctgga tgcaactggg
    24361 ggtgattaat gagcaagcgg cagtactggc acgggatgcc gggttgaatg tggtgatgga
    24421 tcgctgcccg gctattgaga tccctcgcct gggcctggcc aaataaaaaa tccccggaag
    24481 gcaaaaacct tccggggatt cgttcaggga tcagttacgc agacgcgggg cctggagttg
    24541 tttgcggatg gtctgcgcca gctcatccat ggatggctgt tcaggatgtt catcctgcaa
    24601 ttcgctactt agctgggctt cagccaggta ggtatgaacc ggtaggccgt tatcgtcctc
    24661 catcactacg tgataccacg gagcggcgcg aagctcgtca tttaccgcca gctcatcagg
    24721 cgacggttca gagagcgaat aaaccgggtc gatatccacg accactccga gataacctaa
    24781 cagggaatgg cggacctgct ggccgatacc gaatttgctg gcaatcatag tcacctcccg
    24841 ggaaatcttt acctttgata taagggtaaa attccacatt tcaagttaca tgacgcgaca
    24901 ggcaaaccct ttcagatata gcccttccgg ataggtagcg atcaccggat gatcggctgc
    24961 ctgacggaac tgctctataa attgtacatc acggccggca tcaattgcgg catccgcgat
    25021 gattttctga aataaatcgc tggtcatcag accggaacag gagaaagtca ggagaatacc
    25081 gccttcattc agcaactgaa tcgccagcat gttgatatct ttatagccac gacacgcgcc
    25141 catcaactgg cttttattct caacaaactt cggcgggtcc atcacgataa cgtcaaattt
    25201 ttcaccgcga tcgcgataag tacgcagcaa tttaaagaca tcatcacgga caaactcagc
    25261 cttgctcaga tccagtttgt tcagctcaac gttctgccgt gcaatatcca gcgcttcctg
    25321 ggaggtatca acgctgacaa cctggctgca accgcccatc agtgccgata cggcgaaacc
    25381 accggtatag gagaaacagt tcagcacacg tttattttca acgtagcggc gggtagccag
    25441 gcggctgtct cgctggtcca ggtagtagcc cgttttgtgt ccgtgctgaa tatccaccag
    25501 cagcttcatg ccgtgttctt caatcggcag cagggcaggc ggcaactcgc cggtgacgag
    25561 gcccagggtc agctccatcc cttctttttt acgtaccgca acatcgctgc gatcgtaaat
    25621 cgcacattcc gggtacagcg tttgcagggc actaactaat gccgcgcgct gatattctgc
    25681 cccagcactc agcagttgca gcaccagaaa attaccgaaa cgatcgatag taatacccgg
    25741 caggccatca gattctccgg cgattaaacg atagctgtcg aggccatctt tttgcgccag
    25801 ccagtcacgc catttttgtg cttgttgcaa acggcgggaa aaaaaagcaa tgtcgataga
    25861 ctcagacggg tcaaacgtcc agacgcgcgc ccggatttgc gaagctggcg aataagcgcc
    25921 gcgtgctaac cattttccct gatgatcaac aatatcgatg gtttcaccga ggctggcttt
    25981 accttccatg cgggcaacgg ccccggaaaa gacccacgga tggcgacgaa gtaatgattt
    26041 ttcgcgccct ttggctaaca ctaaacgtac actcataatt tacttttctg tcgatgcaaa
    26101 gaaatgggcg tcattgtccg gagttttcca tggatttgca acgcgtccat taaggataag
    26161 gagagcagca atgtcgaaag tctgcataat tgcctgggtt tacgggcgag ttcagggcgt
    26221 aggatttcgc tacaccacac agtacgaagc gaaaagactg ggtttaaccg ggtacgccaa
    26281 aaatcttgac gatggcagcg tggaagtggt tgcctgcggt gaagaagggc aggtggaaaa
    26341 attaatgcag tggttaaaga gtggcggccc gcgttctgcg cgtgtagaac gggtgctcag
    26401 cgagccgcat catccctcgg gggaattaac cgattttcgt atccgttaaa tacattttac
    26461 cggttttggc aggccagcaa ttttggtggc ttgcttagcc ggacctttcg gaaacagtcg
    26521 gtataaatag cggctgttac ctttttcttc gccaaattta ttcgccatcg cttttaccag
    26581 catacgaatc gccggagaag tattgaattc cagatagaaa tcacgcacaa aacgcaccac
    26641 ttcccagtgt tccggtgaca gcgaaatccc ttcgttctct gcaatcacca ctgccagcgg
    26701 ctcactccac tggctgcttt ctttgagata gccttcggta tccgtttcta tctctttacc
    26761 ttcgaagatc agcataatta ttactacctt aatcagactg gcggcagtgt aacaaaaaac
    26821 aaagccccgc ataaagcgag gctatgaaag tgttagcggg tgagattaat cgcggctggc
    26881 gaagcccaga atgctcagca ggctgacgaa gatgttgtac agcgaaacat acaggctaac
    26941 cgtggcacga atatagttcg tttcaccgcc atgaacgatg ttgctggttt caaacaaaat
    27001 agcgccagag gagatcaaaa tgaagaccgc actgatcgcc agatgcagag caggcagctg
    27061 caggaagata ttagcaacca taccaatcag caccaccaca atacccgcca tcagcatacc
    27121 gccgaggaac gacatatctt tgcgggtggt cagcacatat gcagagcagc agaagaacac
    27181 taacgccgtt ccgcccagag ccatagcgat tacgtccccc attccggcag acagataggt
    27241 gttcagaata ggtccgagga tataacccag aaaaccggta aaggcgaatg cggagataat
    27301 cccggtcggc ttattcgccg ttttataggt caggaacatc aaaccataca tacccaccag
    27361 cgtcagaatc agacccggag atggcagcat cagcaccgta ctggcagttg cggtaatcgc
    27421 cgaaaaggcc agcgtcaggc tcagcagaaa ataggtatta cgcagcacct tatgggtgct
    27481 aagcagtgat gtacggtcat gtgaagaact aacaatacga tccattgagt cactctctat
    27541 gacagatgta attaattaag cagcataatg ataatgcgta agggcaccca gaagttttac
    27601 ccatctttac gcatttgatc tggaacaggt ttaacagcgg attatcaggt cattaagcaa
    27661 atataacgcc ctgagaattt cgacaggcaa aagaaaaagg ggttagcatt tagctaaccc
    27721 cttatcttat ttggcggaag cgcagagatt cgaactctgg aaccctttcg ggtcgccggt
    27781 tttcaagacc ggtgccttca accgctcggc cacacttccg gaatgacgcg cactataaac
    27841 atcccgatgc ggcgtgtaaa cccctaattt gtttgtttgc ctgaaaaaca gccaaaagtg
    27901 cattgatagc gtgaaataac agcagattga tcatttcatc accatgaatt ccttctcttt
    27961 tactcgttta gcaaccggct aaacatcccc accgcccggc aaaaagaaaa ataggtccat
    28021 ttttatcgct aaaagataaa tccacacagt ttgtattgtt ttgtgcaaaa gtttcactac
    28081 gctttattaa caatactttc tggcgacgtg cgccagtgca gaaggatgag ctttcgtttt
    28141 cagcatctca cgtgaagcga tggtttgcct tgctacaggg acgtcgcttg ccgaccataa
    28201 gcgcccggtg tcctgccggt gtcgcaagga gaagagacgt gcgatatgaa taacgaggaa
    28261 acattttacc aggccatgcg gcgtcagggc gttacccggc gcagctttct caaatattgt
    28321 agtctggctg ccacgtcgct gggattaggc gcgggaatgg caccaaagat tgcctgggcg
    28381 ctggagaaca aaccccgcat tccggtggta tggatccacg gtctggaatg cacctgctgt
    28441 accgaatctt ttatccgctc cgctcaccca ctggcgaagg acgtcatcct ttccctgatt
    28501 tccctcgatt atgacgatac tttgatggct gccgccggaa cccaggcgga agaagtcttc
    28561 gaagacatca tcacgcaata caatggcaaa tatatcctcg cagtagaagg taatccgccg
    28621 ctgggcgagc aggggatgtt ctgtatcagc agcggtcgac cgtttattga gaaactcaaa
    28681 cgtgccgctg ccggagccag cgcgattatc gcctggggaa cctgcgcgtc ctggggctgc
    28741 gtgcaggccg cgcggcccaa tccgacgcag gcaacgccta tcgacaaagt catcaccgac
    28801 aaacccatta tcaaagtacc tggctgcccg ccgatcccgg atgtgatgag cgccatcatt
    28861 acttacatgg tgacctttga tcgcttgcca gatgtcgaca gaatgggccg tccgctgatg
    28921 ttctatggtc agcgaatcca cgataaatgc tatcgccgcg cccacttcga cgccggagag
    28981 ttcgtccaga gttgggatga tgacgctgcc cgcaaaggtt actgcctgta caaaatgggc
    29041 tgcaaagggc ctaccaccta taacgcctgt tcctccacac gctggaatga tggcgtttct
    29101 ttcccaatcc agtctggtca cggctgcctg ggctgtgcgg aaaatggttt ctgggatcgc
    29161 ggttcgttct acagccgcgt ggtcgatatt ccgcaaatgg gtactcattc caccgccgat
    29221 accgtcggtt taaccgcgct tggcgtggtg gcagcggctg ttggtgtgca cgcagtcgcc
    29281 agcgccgttg accagcgcag acgtcataac cagcaaccta cagaaaccga acatcagcca
    29341 ggcaatgagg ataaacaggc atgagcactc agtacgaaac tcagggatac accatcaata
    29401 atgccggacg ccgcctggtg gtcgacccga ttacgcgcat cgaaggccac atgcgctgcg
    29461 aagtgaatat taacgatcag aatgtgatca ccaatgccgt ctcctgcggc accatgtttc
    29521 gcgggctgga gatcatccta caagggcgcg acccgcgcga tgcgtgggcg ttcgttgaac
    29581 gtatctgcgg cgtctgtact ggcgtacacg ccctggcttc ggtttacgcc atcgaagatg
    29641 ctatcggtat taaagtgccg gacaacgcca atatcatccg caacattatg ctggcaacgc
    29701 tctggtgcca cgatcatctg gtgcacttct atcagcttgc cgggatggac tggatcgatg
    29761 tgttagatgc gctgaaagcc gacccgcgga aaacctccga actggcgcaa agtctctcct
    29821 cttggccgaa atcatcccct ggctatttct tcgacgtaca aaaccgcctg aaaaaatttg
    29881 ttgaaggcgg gcagttgggg atcttccgca atggctactg ggggcacccg cagtacaaac
    29941 tgccgccaga agctaacctg atgggctttg cccactatct cgaagctctc gatttccagc
    30001 gtgaaattgt caaaatccac gcggtctttg gcggtaaaaa cccgcatcca aactggattg
    30061 tcggcgggat gccttgcgcc atcaacattg acgaaagcgg cgcggtcggg gcagtcaata
    30121 tggaacgcct gaacctggtg cagtcaatta tcacccgcac ggcggacttc attaacaacg
    30181 tgatgatccc cgacgcctta gccatcggtc agttcaacaa accgtggagc gaaatcggca
    30241 ctggtctttc tgataaatgc gttctcagct acggcgcatt cccggatatt gccaacgact
    30301 ttggcgagaa aagtctgctg atgcctggcg gcgcggtgat taacggcgac ttcaacaatg
    30361 tgctgccagt ggatttggtt gatccgcagc aggtgcagga gtttgtcgac cacgcctggt
    30421 atcgatatcc caacgatcag gtcgggcgtc atccgttcga tggcatcacc gacccgtggt
    30481 acaaccccgg cgatgtcaaa ggcagcgata ccaacattca gcagctgaat gaacaggaac
    30541 gctactcgtg gatcaaagcg ccacgctggc gcggtaacgc gatggaagtg gggccgctgg
    30601 cgcgcacgtt aatcgcttat cacaaaggcg atgctgcgac cgttgagtcg gtcgatcgca
    30661 tgatgtcggc gttgaacctg ccgctttccg gtatccagtc aacgttaggc cgcattttgt
    30721 gccgcgcgca cgaagcgcag tgggccgcag gtaagttgca gtatttcttc gacaagctga
    30781 tgaccaacct gaaaaacggc aatctcgcca ctgcttccac ggaaaaatgg gaacctgcaa
    30841 cctggccgac agagtgccgt ggtgtcggtt ttaccgaagc gccgcgcggg gcgttaggcc
    30901 actgggccgc cattcgcgat ggcaagattg atctctacca gtgcgtggtg ccgaccacct
    30961 ggaacgccag cccgcgcgat cccaaagggc agattggcgc ttatgaagcg gcgctgatga
    31021 acaccaaaat ggcgatcccc gagcaaccgc tggagatcct gcgtactctg cacagctttg
    31081 acccgtgcct cgcctgttca acacacgtgc tgggcgacga cggtagcgag ctgatctccg
    31141 tgcaggtgcg ttaacagcga aggagaatca tcatgcaaca gaaaagcgac aacgttgtca
    31201 gccactatgt ctttgaagcg ccagtccgca tctggcactg gttgacggtg ttatgcatgg
    31261 cggtgttgat ggtcaccgga tactttatcg gcaagccgct accttccgtc agcggcgagg
    31321 cgacgtatct gttctatatg ggctacatca ggttaattca cttcagcgcc gggatggttt
    31381 ttaccgtggt tttgctgatg cggatctact gggcttttgt tggcaatcga tactcccgcg
    31441 agctgtttat cgtgccggta tggcgtaaaa gctggtggca gggcgtgtgg tatgaaatcc
    31501 gctggtatct gtttctggca aaacgtccga gtgccgatat aggccataat cccatcgccc
    31561 aggcggcgat gttcggctat ttcctgatgt cggtctttat gatcatcact ggttttgcgc
    31621 tgtacagcga acacagccag tacgctattt ttgcgccgtt ccgttatgtg gtggaatttt
    31681 tctactggac gggtggcaac tcaatggaca ttcacagctg gcatcggctg gggatgtggc
    31741 tgattggcgc gtttgtgatc ggtcatgtct acatggcgct gcgtgaagac atcatgtccg
    31801 acggcacggt gatctccacc atggtcaacg gctaccgtag ccacaaattt ggcaaaataa
    31861 gtaacaagga gtgttcatga gcgagcaacg cgtggtggtc atggggctgg gcaacctgct
    31921 gtgggccgat gaaggcttcg gcgtgcgggt ggcggaacgg ctgtatgccc attaccactg
    31981 gcccgagtat gtggagattg tcgatggcgg tactcaggga ctgaacttgc tggggtatgt
    32041 cgaaagcgcc agccatctgt tgattctcga tgccattgac tacgggctgg aacctggaac
    32101 gctgcgaacc tatgccggag aacgcattcc ggcttatctc agcgcgaaga aaatgagcct
    32161 gcatcagaac agtttctccg aagtgctggc gctggcagat atccgcggac atctgccagc
    32221 acatattgcc ctcgtcgggc tgcaacccgc gatgctcgac gactacggcg gcagcctgag
    32281 cgaactggca cgggagcaac tgctcgctgc ggaacaatcg gcgctggcgc agttggctgc
    32341 gtggggaagt gtgccgcaac tggctaatga atcgcgttgt ctcaattatg actgtctgtc
    32401 gatggaaaat tacgaaggcg ttcgcttgcg ccagtaccgg atgacacagg aggagcaggg
    32461 atgagcaacg acacgccatt tgatgcgttg tggcaacgaa tgctggcgcg cggctggacg
    32521 ccggtcagtg aatcccgtct tgacgactgg cttacgcaag cgccagacgg cgtggtgtta
    32581 ttaagcagtg acccgaaacg cacgccagag gtcagcgata atccggtaat gattggcgaa
    32641 ttactgcacg agtttcccga ctatacatgg caggtggcga ttgctgacct tgagcagagc
    32701 gaagccatcg gcgatcgctt tggcgtcttt cgctttccta ccactttagt gtttaccggc
    32761 ggaaactatc gcggcgtgct gaatggtatt cacccgtggg cggaactgat aaacctgatg
    32821 cgcgggcttg tcgaaccgca gcaggagcgt gcctcatgag cgaaactttt ttccatctgc
    32881 tggggccagg aacgcaaccg aacgatgaca gtttcagcat gaatccactg ccgatcacct
    32941 gtcaggtgaa tgatgaaccg agtatggcgg ccctggagca atgtgctcac agcccgcagg
    33001 tgattgcgct gttaaacgag ttacaacatc aactaagcga acgccagccg ccgttgggcg
    33061 aggtgctggc agtcgatctg ttaaatctca acgccgacga tcgtcacttt atcaatacgc
    33121 ttctcgggga aggggaagtg tcagtgcgca ttcagcaggc tgacgacagt aaaagtgaaa
    33181 tacaggaggc gatcttctgc ggattatggc gggtgcgcag acgtcgcggc gaaaagttgc
    33241 tggaggacaa actggaggct ggctgcgcgc cgctggcgtt gtggcaggcg gcaacgcaaa
    33301 atctcttgcc gacagattcg ctgttaccgc cgcccattga tggcctgatg aatggcctac
    33361 cgttggcgca tgagttactg gcacatgtac gtaaccccga cgcgcagccg cacagcatta
    33421 atctgacgca attacccatc agcgaggctg atcggctttt tctctcacgt ctctgtgggc
    33481 cgggaaatat tcagattcgt accattggct atggcgagag ctatatcaac gccacggggt
    33541 tacgccatgt ctggcattta cgctgtacgg acaccttaaa aggcccgtta ctggaaagtt
    33601 atgaaatctg cccaataccg gaagtggtgc tggcagcgcc agaagatttg gtcgactctg
    33661 cgcagcggct tagcgaggta tgtcagtggc tggcggaagc tgcaccgacg taaaaagacg
    33721 gtaagtatcg ctttcagtct tatgaatatc gcaatcggcg aatacctctg gtcgtagagt
    33781 ttcaggataa agagggagat ctaacattat cgggttattt ttctctcttc gcctacagga
    33841 gtgcgcatgt gggatgtcat tgatttatcg cgctggcagt ttgctctgac cgcgctgtat
    33901 cactttttat ttgtacccct taccctgggg ctgatttttt tgctggctat catggaaacc
    33961 atttacgtgg tcaccggcaa aacaatctac cgcgatatga cgcgcttctg gggtaagctc
    34021 ttcggtatca attttgctct tggcgtggct accggcctga ccatggagtt tcagtttggt
    34081 actaactggg cattctattc caactatgtg ggcgatattt ttggcgcacc gctggcgatg
    34141 gaagcattaa tggccttctt cctcgaatcc acctttgtcg ggcttttctt cttcggctgg
    34201 cagcggctga ataaatacca gcacctgctg gtgacgtggc tggtggcgtt cggttcaaat
    34261 ctctctgcat tgtggatatt gaatgccaac ggttggatgc aatacccgac cggtgcgcat
    34321 tttgatatcg acaccctacg tatggagatg accagcttca gcgagctggt ctttaacccg
    34381 gtcagccagg tgaaatttgt gcacaccgta atggcgggct acgtgaccgg ggccatgttt
    34441 attatggcga tcagcgcctg gtatttactg cgcggacggg agcgcgatgt tgcattacgc
    34501 tcgtttgcca tcggttccgt cttcggtact ctggcgatta tcggcacgct acaactcggg
    34561 gacagttctg cgtatgaagt cgcgcaagta caaccggtaa aactggcggc gatggaaggg
    34621 gagtggcaaa cggaacctgc tcctgcaccg ttccatgtgg ttgcctggcc ggaacaggat
    34681 caagagcgta acgcctttgc catcaaaatt cccgcgctgt tagggatcct cgccactcac
    34741 tcattagata aacccgtgcc gggtctgaag aatttgatgg ctgaaaccta cccacgcttg
    34801 caacgcggac gtatggcctg gctgttaatg caggaaatat cgcaaggcaa tcgtgagccg
    34861 catgtgttgc aggcattccg ggaactggaa ggtgacctgg gctacggcat gttgctctcc
    34921 cgctatgcgc cggatatgaa tcatgtcaca gccgcacagt accaggcggc gatgcgtggc
    34981 gcgatacctc aggttgcgcc ggtattctgg agtttccgca tcatggtggg ctgtggttcc
    35041 ctgctgctac tggtgatgct gattgcgctt gtccagacgc tgcgtggcaa aatcgaccag
    35101 catcgctggg tgctgaaaat ggcgctctgg agtttgccgt tgccgtggat tgcgattgaa
    35161 gccgggtggt ttatgaccga gtttggtcgt cagccgtggg cgatacagga catcttaccg
    35221 acatactccg cgcactccgc tttaaccaca ggacaactgg ctttctcact gatcatgatc
    35281 gtagggcttt acaccctgtt cttaatcgcc gaagtctacc tgatgcagaa atatgcccgt
    35341 ctggggccga gcgcgatgca gagtgaacaa ccgacgcagc aacaggggta aagaagaaaa
    35401 tcatgtttga ttatgaaaca ttgcgcttca tctggtggct gctgattggc gtgatcctgg
    35461 tggtctttat gatctccgac ggatttgaca tggggatcgg ctgtctgctg ccgctggtgg
    35521 cgcgtaatga tgatgaacgc cggatagtga taaacagcgt tggtgcacac tgggaaggca
    35581 accaggtctg gttgatcctc gctggtgggg cattatttgc cgcctggccc agagtgtatg
    35641 cagcggcgtt ttccggcttt tatgtggcga tgatcctggt gctgtgctca ctgttcttcc
    35701 gcccgctggc ctttgattat cgcggaaaaa tcgccgatgc acgctggcgt aaaatgtggg
    35761 acgccggtct ggtcatcggc agtctggtgc cgccggtagt cttcggtatc gccttcggca
    35821 acttgttgct cggcgtgccg tttgccttca caccgcaatt acgcgtggag tatctcggca
    35881 gcttctggca actgctgacg ccattccctt tattgtgcgg attgctcagc cttgggatgg
    35941 taattttgca aggtggcgtc tggttacaac tgaaaactgt tggtgtgatt catctgagtt
    36001 cacagctggc caccaaacgc gctgcactgt tggtgatgct gtgctttttg ctggcgggtt
    36061 actggctgtg ggtcggtatt gatggctttg tactgctcgc ccaggatgct aacggtcctt
    36121 ccaatccgtt aatgaaactg gtggcagtgc tacctggtgc ctggatgaat aatttcgtcg
    36181 aatcgcccgt tttgtggatc ttcccgctgc tggggttctt ctgcccattg ctgacggtga
    36241 tggcgattta tcgtggtcgc ccaggttggg gatttttaat ggcgtcattg atgcaatttg
    36301 gcgtgatttt cacggcaggc atcacgctgt tccccttcgt catgccgtca agcgtgagtc
    36361 cgatctccag cctgacgttg tgggacagca cttccagcca gctgacgctg agcattatgt
    36421 tggtaatcgt gctgatattt ttgcccattg tgttgctcta cactctctgg agctactaca
    36481 aaatgtgggg gcgcatgaca acagaaactc tccgccgtaa cgaaaacgag ttgtactaag
    36541 gagcaggaac aatgtggtat ttactttggt tcgtcggcat tttgttgatg tgttcgctct
    36601 ccacccttgt gttggtatgg ctggacccgc gtctgaaaag ttaacgaacg taggcctgat
    36661 gcggcgcatt agcatcgcat caggcaatca ataatgtcag atatgaaaag cggaaacata
    36721 tcgatgaaag cgatcttaat cccattttta tctcttctga ttccgttaac ctcgcaatct
    36781 gcattcgctc agagtgagcc ggagctgaag ctggaaagtg tggtgattgt cagtcgtcat
    36841 ggtgtgcgtg ctccaaccaa ggccacgcaa ctgatgcagg atgtcacccc agacgcatgg
    36901 ccaacctggc cggtaaaact gggttggctg acaccgcgcg gtggtgagct aatcgcctat
    36961 ttcggacatt accaacgcca gcgtctggtg gccgacggat tgctggcaaa aaagggctgt
    37021 ccgcagcctg gtcaggtcgc gattattgct gatgtcgacg agcgtacccg taaaacaggc
    37081 gaagccttcg ccgccgggct ggcacctgac tgtgcaataa ccgtacatac ccaggcagat
    37141 acgtccagtc ccgatccgtt atttaatcct ctaaaaactg gcgtttgcca actggataat
    37201 gcgaacgtga ctgacgcgat cctcagcagg gcaggagggt caattgctga ctttaccggg
    37261 catcggcaaa cggcgtttcg cgaactggaa cgggtgctta attttccgca atcaaacttg
    37321 tgccttaaac gtgagaaaca ggacgaaagc tgttcattaa cgcaggcatt accatcggaa
    37381 ctcaaggtga gcgccgacaa tgtctcatta accggtgcgg taagcctcgc atcaatgctg
    37441 acggagatat ttctcctgca acaagcacag ggaatgccag agccggggtg gggaaggatc
    37501 accgattcac accagtggaa caccttgcta agtttgcata acgcgcaatt ttatttgcta
    37561 caacgcacgc cagaggttgc ccgcagccgc gccaccccgt tattggattt gatcatggca
    37621 gcgttgacgc cccatccacc gcaaaaacag gcgtatggtg tgacattacc cacttcagta
    37681 ctgtttattg ccggacacga tactaatctg gcaaatctcg gcggcgcact ggagctcaac
    37741 tggacgcttc ccggtcagcc ggataacacg ccgccaggtg gtgaactggt gtttgaacgc
    37801 tggcgtcggc taagcgataa cagccagtgg attcaggttt cgctggtctt ccagacttta
    37861 cagcagatgc gtgataaaac gccgctgtca ttaaatacgc cgcccggaga ggtgaaactg
    37921 accctggcag gatgtgaaga gcgaaatgcg cagggcatgt gttcgttggc aggttttacg
    37981 caaatcgtga atgaagcacg cataccggcg tgcagtttgt aatgcataaa aaagagcatt
    38041 cagttacctg aatgctctga ggctgatgac aaacgaagaa ctgtctaatg cgtagaccgg
    38101 aaaaggcgtt cacgccgcat ccggccactt tcagttttac tctttctcgg agtaactata
    38161 accgtaatag ttatagccgt aactgtaagc ggtgctggcg cgtttaatca caccattgag
    38221 gatagcgcct ttaatattga cgcctgcctg ttccaggcgc tgcattgaca aactcacctc
    38281 tttggcggtg ttcaagccaa aacgcgcaac cagcaggctg gtgccaacag aacgccccac
    38341 gaccgcggca tcactcaccg ccagcatcgg cggcgtatcg acaatcacca gatcgtaatg
    38401 gtcgttcgcc cattccagta attgacgcat ccgatcgcgc atcagcagtt cagacgggtt
    38461 aggtggcacc tgaccgcgag taatcacatc aaagcctcct ttgccaaaat gctggatcac
    38521 tttgttgagc tcatctttac ctgccagata ttccgacaag ccatgttcat tactcacggt
    38581 aaacaggtta tgcgaataac cacggcgtaa gtcggcatca ataaataaca ctttttgatc
    38641 ggactgggcg atcaccgctg ccagagttga actgacaaac gttttaccac tgtctggcgt
    38701 cgcaccggtg atcatcagaa tgttattctc cgtctccatc atagcgaagt gcagactggt
    38761 tcgtagcgca cgtacggctt ccacagcaga atccgccggg ttatccaccg ccaggaaggg
    38821 gatattttta gtacgatggc gctgctgatt agaaaataaa tttttcttac gcagacgggt
    38881 acgtttatcc agccactcgg acattgggat agtggcataa acgctgatgc cgtgctcttc
    38941 cagttgttcc ggggcttcta caccacgacg caacatcgca cgcgccagca cggcacccac
    39001 cgaaataaac aggccaagaa taaaaccaag caccacgttc aacgcttttt tcggtttcac
    39061 tggctgcggc tgagtgactg ctgggtcgat aatccgcacg ttaccaatgg cactggattt
    39121 cgaaatactc aactcctgct ggcggttaag taattgcaga tataccgcac ggcccgcttc
    39181 tacgtcacgg cttaaacgta acacttcctg ttgagtggaa ggcattgccg atacccgctt
    39241 attcaggcgt ttgcgttctt gctccagcgt ctggcgtttt tccagcagcg cacgataagt
    39301 tgggtgatct ttcttataca gctgggagat ctctgcctcg cggaaagtca gctcattgag
    39361 ttgattatca acgttcacaa tctgctcaag aacggctttg gcttctaggt taaggtcaac
    39421 cgaatcgcgc tgctggcgat aaacgttgag tttttcttcc gcctggtcca gctcgctgcg
    39481 cacttcaggc aactggcgct gtaagaattc aaggctttgt gaatcctgcg ccgcctggcg
    39541 agcgatattc tgttgcaaat agttgttagc gatgctgttc agaatacgag taatcaactg
    39601 gggatcatca ccagtcatgg taagttccag catcccgctt tctttactgc gttcgctaac
    39661 ggtaaaggtt tcctgcaatg cgttaatcgc ttccagttcg gtacgctggc tcaggacaaa
    39721 ctgtgttcct ggtttggcct taatgtccgc gatagtcagc gcaacgccat ctttttccag
    39781 acgctggccg accataccat tgacggtgaa ctcttcacct tccagtgtat agtggccgtt
    39841 ttccccaacc gtgagtgtca gttgctgatc ctgaccattc agttgtggaa tatgcatcca
    39901 gctgatcgcc agctcacctg gtttttcttt ggttaatctc gcccagccgc gacccacaat
    39961 cggaaaatac ttctgctcaa ctatgtcgcg cagattcagt tcagcaatgg ttttaccgag
    40021 aatcatgcgc gattgcagca gttggatctc cggtgcagac tcgggcgatg agttagggat
    40081 catatcgctc aggccgctga gaatggcgtt gccctgtttt tgctcaacct ggaccagagt
    40141 atctgcctga taaattggtg tgcttaacag cgagtaagcg acagcgatca gcgtgaataa
    40201 cgcggttacg ctgataataa acttacggtg atcccataac tcgccgacca gacgaagcag
    40261 atcgatctca ttttcctgag tgctgcctgg tggcgtattc atatttttag ttgtcatcgt
    40321 attttataaa ctcaaattac cggctgaggc gcttcgccca ttcctgactg gcgcgctcca
    40381 acataccgta gacatgttca aatgcgtcct gacttttacg atagggatcc gggatctctt
    40441 tctgttccag ccattgccca aacagcattg tcttcccgcg gacctcggga gcgattgcgg
    40501 taacctgagc aatatgctct gactccattg ccagaatcag atcgtaattt cgtgccatct
    40561 cagcagtgag cttacgtccg gcatgtcctt caagagatac gccatgatta gcggcaacat
    40621 ctgctgctgt cgcatctgca gggtgtttta ccagaccatg aacacctgcc gatttgactt
    40681 ttacgcctgg cagacgttta cgcagcaagc gctcgccaat gggcgaacgg caaatgttgc
    40741 cggtacaaac caccaggatg gagttaaatt ttagttgggc catgtttgaa tccaccgtga
    40801 agtctctgtc aggtcatgca ccccggaaat cgtcggtacc agcagagaaa tcacacggtt
    40861 ccaacgagcc agcggcgcgg tagtgacata aacaatgtcg taaggttcaa gctggaattc
    40921 cgttccgagt atcattgccg atgcgtcctt cgcattcagc tgataaatat tggcgatttt
    40981 gccattctgc ttgttttgcg ttgcacgaat aacaaaaatc cccgtcgcat cagcgacatc
    41041 ctgattcata ccctcagcgt tacccagcgc ttccgccagg gtcataccgc tgcggtccat
    41101 tttcagcgtg ctctgtttac ccacttcacc catcacgaag actttcagat catcgttgcg
    41161 cggaataaat aaaatatcgc ccgggtgcag cagtttgttc tggcgcaagt cgccacgctg
    41221 catcagcgca tagaggttca ctttggtctt tacgccattc tgggtgagca ccacgttgcg
    41281 ccagtctgca tctgcggtca gaccgcccgc ggcgttaatc gcatccatga tggtcagagg
    41341 aatattggta atcggctgct gacccgattt gctgacttcg ccggtgacgt acgctttttg
    41401 cgatcggaac gccgcgacgc tgacatcgac ttgcgggctt tcaatgactg aatcgagacg
    41461 cgctgtaatc tcgttgcgta cttgggtaag tgttttcccg gccactttca ggcgaccaat
    41521 ataggggtag aaaatcgcac catcggcgtt aacccagttg ccggtatcac tggcgctacg
    41581 gtattgccct gcgggggtgg ttagttccgg gtgatcccag accgtaacca tcaacacatc
    41641 accaatcccg atacgatatt catagtttgc gatttgctgc tccagctccg ggttagcctg
    41701 cgacataatc ggtttggcgc gcaactgatc aatcaatcct ggcgtgacgg gatagatatt
    41761 gaccattttg tccaggtcat actgattgtc aggtagttca atgacatcct tgttcctggt
    41821 cgataaattc tgaccaggaa caagggtaca tgctgtcaaa gacagaacag ccaatgtcag
    41881 taccgaaaac ttaaaaatgt tctttttcat tggtttatat ttatcagtca atgtaatgtt
    41941 atgaattacg tcaggttatt gtccaaccgg tacttctcgc tctgccgtca ttggatagag
    42001 ctggtatttg cgtgacagca tttgtccacc atcacgcgtc aatggtgtcc acgaaaccac
    42061 cgcgcggttg cggttaggtc caatggtcat caagtcgaat ggaatcgaga tataaaaacc
    42121 tttactaaag ccgccttcgc cgtagtcatc tttagatacg ttactgattg ccgcccatac
    42181 ccctaccgcc acgccgctgt caaagcgttt ggcgacgtcg atcgttgctc ctttatcttt
    42241 tgccagatat tgcccaacgc taagtttcat cagtacgcca ttgagcgtcg gcgggttcca
    42301 gtaagccgtc acgaaaccag ttggcgtgga ataatcggtg aagcgcatca tgttgtccca
    42361 gtcacgttgc ttcacgtagt taacgtccac acccagcgcc cagctggcat ctagcgggcg
    42421 ataaagcagc tcggaaccga caccggcgta catcgtttcc agataaccgc catacacctg
    42481 gccatagaaa ccattgccta agtcggcaaa gtagttcgcc tgcaagttgt tgagataaac
    42541 gtcattgcga acgtaatcac ggatatgcgt gcgcacgcgg ggcagggtag agtccgcggg
    42601 caacagcgaa gacttaaact tgtcgtagtt gttgtaaata ttggtgaaaa taccgccatc
    42661 aagcagcagg tggtcggtaa accagtagcg ggcactggac atcagcccca gctggaacat
    42721 atagaaatct tccgggccgc ccagcgactg tgaaagtgtt gggttgaaag agtagctaaa
    42781 gcgatcttca cgaatacggt agccccgacc aaaggcagaa agatcttctg cttcaacacg
    42841 ttgttgttga agttgctctg attgaccagg cgctgtacca gccagctgtt tgcgcaggct
    42901 ggctacgtcg gtttcggtag tcaccatcgc catatgctcg cgcttttgcg tcacgctaat
    42961 cttctcaacg ccttgcggca ggttattcac cagaatccgg ttggcacgat cgaccgcttc
    43021 gcgagaatca cggtatttgt attgttgacc agacatatac agcgtcttat cgcgcagctg
    43081 aatttccggt gcttcaaaac ctgcgttgta cttcagcgcg gtaagttggt tcgctactgt
    43141 ggtgtactgc aatccttcag attcaggcgc aggttgatat gccggttttg gcgtatcgcg
    43201 cagggcaggg cgcagatcgt tgaaattggt ccgtaacgtg aagccaaaca tcaacgtgtt
    43261 accgcgttca taactcaggt tgagatctgc ccagctggca gcgcgataaa ctgcgccgac
    43321 gttgaaatgg cttgcctgag gcagtttgcc agcgaaatca ttctggtaat tgttgccatc
    43381 gtattcgagt ttcagacgca ggggattcca cggcgtttga tactcaatgc cgccaaagat
    43441 ggaagccggg ccacgaaaga tatcgctaaa gctgatatcg cccgcatcgt gagactctgc
    43501 gcgatgacaa tatttatcgt tcacccggca aaacgggttg gtaatattgc ccgcattacc
    43561 ggcgtagccc catgccatcc cgagggtgaa atcaaatggc cccgcttgct tgctggccac
    43621 cagatactca ccgtcaaaca gacccgtacc agcaatatca cgtttaccaa acgccacttg
    43681 cggtagccag taaccttctt cccacaggcg aagtttaaaa tcgaatgatt tgtctttgta
    43741 tgactgatcg ccgctgaaat cttcccactg gctatatttg cgtgtgcgca catccgtata
    43801 acgaatggtg ccttccagcc atgggaacag cgccacggag gtggagtaga accggtattg
    43861 atcgttatcc cggtagttga cgctgaattc accttccggt gcgatgcgcg catttggcat
    43921 ctgcaacaat cctgtgccgc caaagtctga ttgcgacgaa cccagcggat ccgggtaggt
    43981 taatacttca gcatgacagg cactggagac ggcaatggcc aggcagctta aaagataaga
    44041 attcttcttc atcagtcagg aacacgttgc gttaaaacag acacaatctg gtcatttaaa
    44101 tcagcatatt tttcgggcag tacatgcgca gaaaagccca accaaagctg gctgccaggc
    44161 ggtgggtcca catgtctttt attccacagg gcaacagggg cgacgacagt ctcaccctca
    44221 ggcgtaatca ccataacgtt attcttgtcc gcgcctgcaa ggcgggggtg atcttgcaga
    44281 taatcggtaa cgctacggcc tgcctgccag ggcaattgcc cggccccaga aaccgcaccc
    44341 agcagagtaa tagtcaccgg acgctgtacg gtatagagcg tatagtcccc gaccaacggg
    44401 ggattgctgt tctcatccac tcgaacaaaa tcagggtcca gtttgaccgg taagcgacca
    44461 gtgatattga gattgagtaa ctgctggcgc acagatttaa tcgttgccgc cacatcgtcg
    44521 tcagcttctg cttcccagga agcaagctgt gccatgacat gttggtagtc tttaagcgct
    44581 ttagctttcg ccgcagagtc ggtcagcaag gcaccaggcc accagaggcg atcgcgcagt
    44641 tgcggttgtg tcaccaactg gacaacattt tccatggggc caacggaaag tgtctgttgt
    44701 tcgccaggca gataaatagt caccgttcct tgcgcaaagg catggggtgt cattacgtaa
    44761 agtacgctgg caatgaaata cgactgtaat ttattcatgg tgcgggttta agaaacgtca
    44821 tttctacggg aataacccct gcgcctaaca tttgccgact ttgacgaacc tggccagtag
    44881 ccgaatcgac ccagaatgtg ttttgccact gtttttctgg ccgcgtggaa gtcacctctt
    44941 cctgccagac attacacagc acattgcgac ccgcaatatt cagcgtctct aatccagcaa
    45001 aggaaaaagt agaactcagg gtcgcagagc gaaaatggtt gtcttcactc cagagaatat
    45061 cgcgcgtcca gcggctgcca tcttttattg ccagcgcgtt acgcagaggg tcctgcccgg
    45121 aatttgtcac ttccagcaga ttattattaa gtttgacggt ttttaaaaga cgtccattgt
    45181 gggtaaccag catggcgtta tcctgggata accatttgct ttgttcttgt tctatatatc
    45241 ccagtaccac aaagattcgt tgcccttcat taaggcgtaa atacatcgtg gaataaggca
    45301 acgcctggat ctgctgatcc gctacggtga tatcctgatt atcgaaaagg ctggcgcgaa
    45361 atgtatcgac catactttgc tggctgtgcg tacatcccgc aagaaatagt gcgaaaatcg
    45421 ataaaataag agggcgcacc tttaatcctt gaaaggttaa ttaaaaaaat gcaaatcttt
    45481 aaagcccggt acgaatatcg caaccgggta tcatttaact ttaatttcga cgcgttaaag
    45541 cagtattagc gtgtagtgga cgtggtggtt gaggtgttat gagaaccgcc atcgccactg
    45601 tcatttgctg caacaactgc caacgtcgcc acaccaacag ccgttgccac accgacaact
    45661 gtcgccgtgc cgacagcgcc agcagccacg ccaccagtgg tagtagcagt cgtggttgcg
    45721 ccggtagtgg tcgttgtggt gccagtagta cccgtcgttg cctcggtccc gtttgttgct
    45781 tcaggggcag caaacgcagc tggcgtcgtc aacatgaagg ccataaggat tgcagaaagc
    45841 ttgtgtttca taacttttcc tttattcatc gcatggacaa tacgtacgct tgagatcagg
    45901 attgtctact ttgagtataa catccttgtg aaatctccct ttcctcatac cgcttgcact
    45961 atatactgcg ggtaggaaag gcgcgcagag ggaaatataa gattgttaac tatccccctc
    46021 tggaaatacg acttgtgagc ataagataaa tcttagcaaa atacaaatta aagataagga
    46081 aattgttacg aaagctatta attattgctg gtaatatagt ttcaagtggt actataactg
    46141 gctgttaaat ggcatttata actattaggt gcagagatat tcgcttaaat ggattagttt
    46201 ctttgtggaa aagtaactga tgttataata tatgatgttg actattgcac tattccaata
    46261 aaaccagtca gctttaaaca agcagcgtca tattaagaga gataaacatt tgccgctgtt
    46321 ggtcctcgca ggccatttac gcggcaaaat tccacacgta atcctggtat aagcacttct
    46381 gcgtcgcggg gagtgaatgc ggaaatatgg acctgaactt ctttacgacc gtcggagggg
    46441 ataatgaatc ctttgccgct tttgcgatca aaggttttga caattcctgt cattttacgg
    46501 gacaaacaaa ttccttactg aaaatactgc gctgcactat acggggttaa taaaataaag
    46561 ccagcgatat ttaagaccgc cggacggcta aaataaaatt tgcttaatct caattatcat
    46621 gcgttaatag ctgcgtcggt ttgaaagaca gacagcatac aaagtagttt actaaagcag
    46681 ttctcattat caggcattat ccccttcttt tgagtctctc tcctgaacac taagtagttt
    46741 ctgtattaaa gccctgtttg ccgaaaggcc caaaatgaag gaagtaaaat atgtctaata
    46801 aaatgactgg tttagtaaaa tggtttaacg cagataaagg ttttggcttt atcactcctg
    46861 atgatggcag caaagacgtt ttcgtccatt tcactgccat ccagagcaat gaattccgca
    46921 cgctgaacga aaatcagaaa gttgaatttt ctattgagca ggggcaacgt ggccccgcgg
    46981 cagcgaacgt tgttacgctc taaggttgcc gttattactc aacatctcca tttccgctgt
    47041 ccatgttgtc atggttcaca gtaccgcaca tcggcattcg atgtgacgga gcgaaatcct
    47101 ttgggcgcta agtgtatttt ttgtaaatcg acgatgatca cctttgataa cgtcacgctg
    47161 caaatacgca ctgaccatgc gccgctggat ttcacaaaat aatatcaggc tccctcg
//
LOCUS       DAJVUP010000008        45400 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.008, whole genome shotgun sequence.
ACCESSION   DAJVUP010000008 DAJVUP010000000
VERSION     DAJVUP010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 45400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45400
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.008"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(17..1189)
                     /gene="cgtA"
                     /locus_tag="OQQ75_000491"
     CDS             complement(17..1189)
                     /gene="cgtA"
                     /locus_tag="OQQ75_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HCS1974935.1"
                     /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD
                     VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG
                     ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLAAK
                     PRWLVFNKIDLLDKAEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE
                     NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR"
     gene            complement(1205..2170)
                     /locus_tag="OQQ75_000492"
     CDS             complement(1205..2170)
                     /locus_tag="OQQ75_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012135318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1974936.1"
                     /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL
                     MASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ
                     VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWG
                     VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ
                     LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR
                     PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHTTVVSQPRAGE"
     gene            complement(2297..2554)
                     /gene="rpmA"
                     /locus_tag="OQQ75_000493"
     CDS             complement(2297..2554)
                     /gene="rpmA"
                     /locus_tag="OQQ75_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HCS1974937.1"
                     /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE"
     gene            complement(2575..2886)
                     /gene="rplU"
                     /locus_tag="OQQ75_000494"
     CDS             complement(2575..2886)
                     /gene="rplU"
                     /locus_tag="OQQ75_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HCS1974938.1"
                     /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG
                     EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS
                     A"
     gene            3145..4116
                     /gene="ispB"
                     /locus_tag="OQQ75_000495"
     CDS             3145..4116
                     /gene="ispB"
                     /locus_tag="OQQ75_000495"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HCS1974939.1"
                     /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG
                     KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA
                     FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE
                     ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA
                     DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN
                     ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR"
     gene            4346..4624
                     /gene="sfsB"
                     /locus_tag="OQQ75_000496"
     CDS             4346..4624
                     /gene="sfsB"
                     /locus_tag="OQQ75_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SfsB"
                     /protein_id="HCS1974940.1"
                     /translation="MESNFIDWHPPDIIAGLRKKGTSMAAESRRNGLSSSTLANALSR
                     PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK"
     gene            complement(4672..5931)
                     /gene="murA"
                     /locus_tag="OQQ75_000497"
     CDS             complement(4672..5931)
                     /gene="murA"
                     /locus_tag="OQQ75_000497"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HCS1974941.1"
                     /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV
                     PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA
                     RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDK
                     VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV
                     ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG
                     EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH
                     VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI
                     YHIDRGYERIEDKLRALGANIKRVKGE"
     gene            complement(5986..6240)
                     /gene="ibaG"
                     /locus_tag="OQQ75_000498"
     CDS             complement(5986..6240)
                     /gene="ibaG"
                     /locus_tag="OQQ75_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417657.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family iron metabolism protein IbaG"
                     /protein_id="HCS1974942.1"
                     /translation="MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVK
                     KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF"
     gene            complement(6400..6693)
                     /gene="mlaB"
                     /locus_tag="OQQ75_000499"
     CDS             complement(6400..6693)
                     /gene="mlaB"
                     /locus_tag="OQQ75_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HCS1974943.1"
                     /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL
                     SRVSRVDTGGLALLLQLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR"
     gene            complement(6693..7328)
                     /gene="mlaC"
                     /locus_tag="OQQ75_000500"
     CDS             complement(6693..7328)
                     /gene="mlaC"
                     /locus_tag="OQQ75_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HCS1974944.1"
                     /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN
                     EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK
                     QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN
                     WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK"
     gene            complement(7347..7898)
                     /gene="mlaD"
                     /locus_tag="OQQ75_000501"
     CDS             complement(7347..7898)
                     /gene="mlaD"
                     /locus_tag="OQQ75_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HCS1974945.1"
                     /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYA
                     TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR
                     TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK
                     NSGDAPAAAPGNNETTEPVGTTK"
     gene            complement(7903..8685)
                     /gene="mlaE"
                     /locus_tag="OQQ75_000502"
     CDS             complement(7903..8685)
                     /gene="mlaE"
                     /locus_tag="OQQ75_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014071945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HCS1974946.1"
                     /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL
                     VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV
                     VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTV
                     IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL
                     FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN"
     gene            complement(8693..9502)
                     /gene="mlaF"
                     /locus_tag="OQQ75_000503"
     CDS             complement(8693..9502)
                     /gene="mlaF"
                     /locus_tag="OQQ75_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HCS1974947.1"
                     /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG
                     IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV
                     FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA
                     LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL
                     ADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS"
     gene            9712..10689
                     /locus_tag="OQQ75_000504"
     CDS             9712..10689
                     /locus_tag="OQQ75_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HCS1974948.1"
                     /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV
                     VSIGTSLPEIIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR
                     RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTR
                     EQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAI
                     GTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDY
                     SVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE"
     gene            10703..11689
                     /gene="kdsD"
                     /locus_tag="OQQ75_000505"
     CDS             10703..11689
                     /gene="kdsD"
                     /locus_tag="OQQ75_000505"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase KdsD"
                     /protein_id="HCS1974949.1"
                     /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK
                     MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA
                     ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP
                     TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH
                     VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV
                     MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV"
     gene            11710..12276
                     /gene="kdsC"
                     /locus_tag="OQQ75_000506"
     CDS             11710..12276
                     /gene="kdsC"
                     /locus_tag="OQQ75_000506"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HCS1974950.1"
                     /translation="MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYM
                     GNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK
                     LIAFSELLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA
                     GGRGAVREVCDLLLLAQGKLDEAKGQSI"
     gene            12273..12848
                     /gene="lptC"
                     /locus_tag="OQQ75_000507"
     CDS             12273..12848
                     /gene="lptC"
                     /locus_tag="OQQ75_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HCS1974951.1"
                     /translation="MSKARRWVTIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS
                     EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK
                     LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG
                     LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP"
     gene            12817..13374
                     /gene="lptA"
                     /locus_tag="OQQ75_000508"
     CDS             12817..13374
                     /gene="lptA"
                     /locus_tag="OQQ75_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide ABC transporter
                     substrate-binding protein LptA"
                     /protein_id="HCS1974952.1"
                     /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS
                     LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG
                     KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV
                     TTVLVPSQLQDKNNKGQTPAQKKGN"
     gene            13381..14106
                     /gene="lptB"
                     /locus_tag="OQQ75_000509"
     CDS             13381..14106
                     /gene="lptB"
                     /locus_tag="OQQ75_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HCS1974953.1"
                     /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT
                     TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV
                     LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH
                     GTPTEILQDEHVKRVYLGEDFRL"
     gene            14154..15587
                     /gene="rpoN"
                     /locus_tag="OQQ75_000510"
     CDS             14154..15587
                     /gene="rpoN"
                     /locus_tag="OQQ75_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HCS1974954.1"
                     /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN
                     PLLEQIDTHEEIDTSETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG
                     DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
                     ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL
                     IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV
                     LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE
                     SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
                     PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
                     IMVARRTVAKYRESLSIPPSNQRKQLV"
     gene            15610..15897
                     /gene="hpf"
                     /locus_tag="OQQ75_000511"
     CDS             15610..15897
                     /gene="hpf"
                     /locus_tag="OQQ75_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HCS1974955.1"
                     /translation="MQLNITGNNVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVE
                     KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH"
     gene            16015..16506
                     /gene="ptsN"
                     /locus_tag="OQQ75_000512"
     CDS             16015..16506
                     /gene="ptsN"
                     /locus_tag="OQQ75_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HCS1974956.1"
                     /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS
                     LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ
                     PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP
                     DEA"
     gene            16552..17406
                     /gene="rapZ"
                     /locus_tag="OQQ75_000513"
     CDS             16552..17406
                     /gene="rapZ"
                     /locus_tag="OQQ75_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HCS1974957.1"
                     /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL
                     ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL
                     HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL
                     TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF
                     IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH
                     RTLEKRKP"
     gene            17403..17675
                     /gene="npr"
                     /locus_tag="OQQ75_000514"
     CDS             17403..17675
                     /gene="npr"
                     /locus_tag="OQQ75_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS phosphocarrier protein NPr"
                     /protein_id="HCS1974958.1"
                     /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA
                     EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED"
     gene            17889..18521
                     /gene="yrbL"
                     /locus_tag="OQQ75_000515"
     CDS             17889..18521
                     /gene="yrbL"
                     /locus_tag="OQQ75_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP regulatory network protein YrbL"
                     /protein_id="HCS1974959.1"
                     /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIR
                     RELKYYAYLGRRLKDWSGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR
                     YEEDIAQLRQLLKQLKRYLQDNRIVTMSLKPQNILCHHISESEVIPVVCDNIGESTLI
                     PLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQPRESKTLALTSREA"
     gene            complement(18518..19246)
                     /gene="mtgA"
                     /locus_tag="OQQ75_000516"
     CDS             complement(18518..19246)
                     /gene="mtgA"
                     /locus_tag="OQQ75_000516"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HCS1974960.1"
                     /translation="MSKSRLTVFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAV
                     MVERQVSAWLHGNFRYVAHSDWVSMDQISPWMGLAVIAAEDQKFPEHRGFDVASIEKA
                     LAHNERNENRIRGASTISQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV
                     YLNIAEFGDGVFGVEAAAQRYFHKPASKLTRSEAALLAAVLPNPLRFKVSSPSGYVRS
                     RQAWILRQMYQLGGEPFMQQHQLD"
     gene            complement(19243..19896)
                     /gene="elbB"
                     /locus_tag="OQQ75_000517"
     CDS             complement(19243..19896)
                     /gene="elbB"
                     /locus_tag="OQQ75_000517"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709007.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HCS1974961.1"
                     /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ
                     QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS
                     NFATLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA
                     EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE"
     gene            complement(20126..22462)
                     /gene="arcB"
                     /locus_tag="OQQ75_000518"
     CDS             complement(20126..22462)
                     /gene="arcB"
                     /locus_tag="OQQ75_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic respiration two-component sensor
                     histidine kinase ArcB"
                     /protein_id="HCS1974962.1"
                     /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM
                     VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL
                     SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF
                     LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK
                     VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL
                     ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI
                     FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV
                     ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI
                     FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV
                     AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK
                     PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD
                     VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI
                     TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS
                     PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK"
     gene            complement(22558..23487)
                     /locus_tag="OQQ75_000519"
     CDS             complement(22558..23487)
                     /locus_tag="OQQ75_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312117.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HCS1974963.1"
                     /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG
                     CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ
                     QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
                     HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHI
                     VKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC
                     ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE"
     gene            24162..28622
                     /gene="gltB"
                     /locus_tag="OQQ75_000520"
     CDS             24162..28622
                     /gene="gltB"
                     /locus_tag="OQQ75_000520"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HCS1974964.1"
                     /translation="MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA
                     ILADGKTGDGCGLLLQKPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIV
                     EEELQRETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA
                     RRRIEKRLEADKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF
                     STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLHDAAPFVNET
                     GSDSSSMDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWD
                     GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG
                     PGELMVIDTRSGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELD
                     DDTLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ
                     QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT
                     TMKEEHYRADTLDITFDVTKTTLEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLP
                     VPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETL
                     GRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV
                     VGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPD
                     VVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGENAVNIADVEPASELFK
                     RFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGR
                     FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH
                     DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT
                     GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE
                     SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE
                     TRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALYCTEN
                     NPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA
                     ADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
                     EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCIL
                     GKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLNVDDLAIHEEHLRGLITEHVQ
                     HTGSQRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ"
     gene            28635..30053
                     /gene="gltD"
                     /locus_tag="OQQ75_000521"
     CDS             28635..30053
                     /gene="gltD"
                     /locus_tag="OQQ75_000521"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit GltD"
                     /protein_id="HCS1974965.1"
                     /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEQFSEGQAKAQA
                     DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR
                     LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA
                     CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE
                     VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENKDADGVYAALPFLIANTKQLMGFGE
                     TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN
                     AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPA
                     DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSD
                     LVVTAIAEGRKAADGIMNWLEV"
     gene            30237..30716
                     /locus_tag="OQQ75_000522"
     CDS             30237..30716
                     /locus_tag="OQQ75_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005085993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HCS1974966.1"
                     /translation="MESLSERTSTGYQQIHDGIIHLVDSARTETVRSVNALMTATYWE
                     IGRRIVEFEQGGEARAAYGAQLIKRLSKDLSLRYKRGFSAKNLRQMRLFYLFFQHVEI
                     RQTVSGELTPLGIPQTPSAEFPSAKIWQTLSAKLRGCLIFPQLLYCISYFRFVYSCK"
     gene            30733..31038
                     /locus_tag="OQQ75_000523"
     CDS             30733..31038
                     /locus_tag="OQQ75_000523"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1974967.1"
                     /translation="MIYIEQLELIHKSGDVLYPVKITRKSSGKTAFHLVPFGLNKTHD
                     LLEVEDASEAIRLVIDERHSIRCSTLTATITNKKGKRIKRTGIYSIKGVNIKEYNVR"
     gene            complement(31114..31578)
                     /locus_tag="OQQ75_000524"
     CDS             complement(31114..31578)
                     /locus_tag="OQQ75_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HCS1974968.1"
                     /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN
                     IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ
                     LCSTIDNEQAIILKPGMFAVFMPSEPHKPGCVVGEPGEIKKVVVKVKADLMA"
     gene            complement(31575..32450)
                     /gene="nanK"
                     /locus_tag="OQQ75_000525"
     CDS             complement(31575..32450)
                     /gene="nanK"
                     /locus_tag="OQQ75_000525"
                     /EC_number="2.7.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312122.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HCS1974969.1"
                     /translation="MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQALRDA
                     LAALVAPLQAHAQQVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLSNLPTIA
                     INDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPSGLAGHIGHTLAD
                     PHGPVCGCGRTGCVEAIASGRGIAAAAQGELMGADARTIFTRAGQGDEQAQQLIHRSA
                     HVLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHD
                     AGLLGAALLAQGEKL"
     gene            complement(32447..33136)
                     /locus_tag="OQQ75_000526"
     CDS             complement(32447..33136)
                     /locus_tag="OQQ75_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HCS1974970.1"
                     /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ
                     AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII
                     AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP
                     ETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ
                     WYNTAMKKAVL"
     gene            complement(33184..34674)
                     /gene="nanT"
                     /locus_tag="OQQ75_000527"
     CDS             complement(33184..34674)
                     /gene="nanT"
                     /locus_tag="OQQ75_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312124.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid transporter NanT"
                     /protein_id="HCS1974971.1"
                     /translation="MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT
                     EVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLAC
                     GFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA
                     AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY
                     RGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPT
                     GVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVSGFL
                     GDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIG
                     GYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLI
                     GLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSTKNDLVKTKS"
     gene            complement(34783..35676)
                     /gene="nanA"
                     /locus_tag="OQQ75_000528"
     CDS             complement(34783..35676)
                     /gene="nanA"
                     /locus_tag="OQQ75_000528"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HCS1974972.1"
                     /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV
                     GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA
                     VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG
                     VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ
                     GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP
                     VDEKYLPELKALAQQLMQERG"
     gene            complement(35798..36589)
                     /gene="nanR"
                     /locus_tag="OQQ75_000529"
     CDS             complement(35798..36589)
                     /gene="nanR"
                     /locus_tag="OQQ75_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417693.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NanR"
                     /protein_id="HCS1974973.1"
                     /translation="MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMI
                     RRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT
                     IIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ
                     SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVS
                     YQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK"
     gene            36969..38335
                     /gene="dcuC"
                     /locus_tag="OQQ75_000530"
                     /pseudo
     CDS             36969..38335
                     /gene="dcuC"
                     /locus_tag="OQQ75_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417694.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
     gene            complement(38378..38875)
                     /gene="sspB"
                     /locus_tag="OQQ75_000531"
     CDS             complement(38378..38875)
                     /gene="sspB"
                     /locus_tag="OQQ75_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HCS1974974.1"
                     /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPME
                     YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT
                     MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPA
                     LRVVK"
     gene            complement(38881..39519)
                     /gene="sspA"
                     /locus_tag="OQQ75_000532"
     CDS             complement(38881..39519)
                     /gene="sspA"
                     /locus_tag="OQQ75_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HCS1974975.1"
                     /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD
                     NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY
                     MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY
                     LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS"
     gene            complement(39914..40306)
                     /gene="rpsI"
                     /locus_tag="OQQ75_000533"
     CDS             complement(39914..40306)
                     /gene="rpsI"
                     /locus_tag="OQQ75_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HCS1974976.1"
                     /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA
                     RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG
                     FVTRDARQVERKKVGLRKARRRPQFSKR"
     gene            complement(40322..40750)
                     /gene="rplM"
                     /locus_tag="OQQ75_000534"
     CDS             complement(40322..40750)
                     /gene="rplM"
                     /locus_tag="OQQ75_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HCS1974977.1"
                     /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY
                     TPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE
                     IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI"
     gene            complement(40968..42095)
                     /gene="zapE"
                     /locus_tag="OQQ75_000535"
     CDS             complement(40968..42095)
                     /gene="zapE"
                     /locus_tag="OQQ75_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HCS1974978.1"
                     /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRP
                     PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR
                     LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
                     KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL
                     TQAHLWLSPLHDETRAQMDKLWLALAGAKRENSPTLEINHRPLATMGAENQTLAVSFT
                     TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS
                     AEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG"
     gene            42289..42687
                     /locus_tag="OQQ75_000536"
     CDS             42289..42687
                     /locus_tag="OQQ75_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HCS1974979.1"
                     /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE
                     LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES
                     EASNDQAPVQMPRDYSEGASGLLRTGAKRD"
     gene            42841..44208
                     /gene="degQ"
                     /locus_tag="OQQ75_000537"
     CDS             42841..44208
                     /gene="degQ"
                     /locus_tag="OQQ75_000537"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegQ"
                     /protein_id="HCS1974980.1"
                     /translation="MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAP
                     MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKG
                     YVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD
                     KLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGAL
                     LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM
                     SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT
                     TEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDCGKGI
                     KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESI
                     YLLMR"
     gene            44298..45365
                     /gene="degS"
                     /locus_tag="OQQ75_000538"
     CDS             44298..45365
                     /gene="degS"
                     /locus_tag="OQQ75_000538"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HCS1974981.1"
                     /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP
                     ASYNLAVRRAAPAVVNVYNRGVNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD
                     QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN
                     PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL
                     SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQSGGI
                     DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV
                     VMRDDKQLTLQVTIQEYPATN"
BASE COUNT        11173 a        12128 c        11450 g        10649 t
ORIGIN      
        1 gccggggttt tgctgattaa cgcttgtaaa tgaactcaac gccttcttcg tcgtcttcgt
       61 cccagtcatc atcccagtcc tcatcatcct cttcagcaat ctcttcaagc tgctggcgat
      121 gataatcatc ccacatgaat tcgactttct ctggctgttt cgcttcttca gcctgcacga
      181 ccgggttttc aatgataaag gtcatcacat cccagcagag atctttcacg cccagtccac
      241 tcgccgcaga gatcagataa tatttatctt cccagcccag cgcttcagca atcgctttcg
      301 ctttctcttc agcttctgcc ttatccagca gatcgatctt attgaacact aaccaacgcg
      361 gtttcgccgc cagatcctgg ctgtattttt ccagctcgct gataataata cgcgcgtttt
      421 caaccggatc ggtgccgtca atcggatcga tatcgatgag gtgcaacagg acgcggcaac
      481 gttccaggtg cttcaggaag cggataccca gacctgcgcc ttccgcagcg ccttcaatca
      541 gtcctggaat atcggcaaca acgaagctct tttcgttgtc cattcgtacc acacccagac
      601 ttggcaccag agtggtaaac ggataatccg ccactttcgg tttagccgcc gataccgcgc
      661 gaataaaggt cgatttaccc gcgtttggca tccccaacat accgacgtca gccagcagca
      721 tcagctccag cagcagctca cgcttatcac ccggcgtacc gttggttttc tgccgtggtg
      781 tacggttaac ggacgatttg aaacgggtat tgcccagacc gtgccagccg cccttagcaa
      841 ccagcagacg ctgaccgtgt ttagtcatat cgcccatggt ttcaccagta ccctggtcga
      901 ttacacgcgt acctaccggc actttaatcg tcacgtcttt accgcgctta ccggtacaat
      961 cgcggcttgc gccgttctga ccgcgctctg cacggaaaga tttttcaaaa cgataatcga
     1021 taagcgtgtt caggttttcg tcggcttcca tccatacgtc accaccatca ccaccgtcgc
     1081 cgccatccgg gccgcctttc ggaatatact tttcgcggcg gaagctcacg caaccattac
     1141 cgccatcacc tgcaacgacc agaatcgatg cttcatcaac aaacttcatt ttattctccg
     1201 taaatcattc gcctgcgcgg ggttgcgata ccaccgttgt atgcttacgt aatccgcccc
     1261 aaatacgatg accaatggcg gaatacatcg cgcccgcaac cacgacaaac gcaccgagat
     1321 aacctaaaag gtttaacatc ggtctggcga agaaatcggg ccaggccagt gataaaagat
     1381 ctgaaaaaaa cagcgtaaac agtggggtga gcgtgatgat cgcgctcacc tgcgctgcct
     1441 gccagcgagc catcgcttcc gccagggcgc catatcctac caatgtattc agtccgcaaa
     1501 aaattaaaca tgcgagctgc cagtggctaa gctgcgctat cactcctggc tttgccagag
     1561 ggaagagcgc aattgtacat aaagtgtaca gcaaaaacag gatctgcggt gaggccagcc
     1621 gacgcaataa aaccttttgc gccacgccat aactcaccca aactgtcgcc gcaccgaccc
     1681 caaagatgac tccccaggtg taatcagtga gctttgtaaa tatctcgacc agactggtgt
     1741 taaaaaacat caccaggccg ctcaggagca tcaatgcccc tacaacctga gtgctgcgca
     1801 ttttctcttt caggataaat acgctggcaa ccatcatgcc aactggcgag agttgcccaa
     1861 tcacctgcga agcggtcgga ctcaggtatt gcaaggatga gctgaacagg atgaagttcc
     1921 caaacagccc ggcggtcgcc actgccaaca aaatcaacca gcgtggctta cgaaacacgc
     1981 gtaatggcgg caacctcttc ttcaccgcaa gaatggcacc caggccaata ctcgccatca
     2041 agaaacggta aaacacgatt gtcggaggtt ccatcacctc cagcacctgc ttcattgcga
     2101 ttggcaacgc cccccagcaa attgctgtgg tgagcgccaa aagaatgcca atgcctgcct
     2161 gctgcttcat accgtattcc ctgcaaagcg catttgcgga ttaacgtcgc accatgctca
     2221 tttttaccgg ttatcgaatg taaaaagccc cgcaacgtgt tgcggggctt tcatccgtta
     2281 ccgggacgcg aaaaacttat tcagcttcga tgctgataaa tttacggttt ttcgggcctt
     2341 taacttcgaa tttcacttta ccgtctgctt tagcaaacag agtgtggtca cgaccgcaac
     2401 ctacgttagc gccagcgtgg aatttggtac cacgttgacg aacgatgatg ctacccgcca
     2461 gaacggattc gccaccgaaa cgcttaacgc ccaggcgttt agcttctgaa tcgcgaccgt
     2521 tacgtgtgga gccgccagcc tttttatgtg ccatttgaaa tctctcctca ggtcttaggc
     2581 gctgatgcca gtaattttca catcagtgaa ccactgacga tggccctgct gcttacgata
     2641 gtgtttacga cgacgaaact taacgatttt aactttctcg ccacgaccgt gagcaacaac
     2701 ttcagctttg attacgccgc catcaacgaa aggaacgccg attttgactt cttcaccgtt
     2761 tgcgatcatc agcacttcag cgaactcaac agtttcgcca gttgcgatgt ccagcttttc
     2821 caggcgaacg gtctgacctt cgcttactcg gtgttgttta ccaccacttt ggaaaaccgc
     2881 gtacatataa aactccgctt ccgcgcacac cttttcaatg attcagagtg cgctataaat
     2941 attcacaata gggcgcgaat attacgcaaa acgcacgtct ttgacaagtg ctacagtcaa
     3001 tacacgaaga aaaaaaacac aacttgtacg gtaacgttta tctgtgccat tttttcagta
     3061 caatcaccct atattcctaa ccataaaccc taagttgcct ttgttcacag taaggtaatc
     3121 ggggcgaaaa gcccggcttt tgcgatgaat ttagaaaaaa tcaatgagtt aaccgcgcaa
     3181 gatatggcgg gtgttaatgc ggcaatcctt gagcagctta attccgacgt ccaactgatc
     3241 aatcagttag gctattacat cgtcagcggc ggcggtaaac gtattcgtcc gatgattgct
     3301 gtactggctg cacgagctgt tggctatgag ggaaatgcgc atgtcaccat tgctgccctg
     3361 atcgagttta tccacacggc gactctgcta cacgacgacg ttgtggatga atcagatatg
     3421 cgcaggggta aagctaccgc caacgctgca tttggcaatg ccgccagcgt gctggtaggc
     3481 gattttattt atacccgcgc gttccagatg atgaccagcc tcggttcact caaagtgctg
     3541 gaagtcatgt cagaagctgt aaacgtcatc gcagaaggtg aagttctgca actgatgaac
     3601 gttaacgatc cggacatcac tgaagaaaac tacatgcgcg ttatctatag caaaaccgcg
     3661 cgtctgtttg aggctgccgc gcagtgttcc gggattctgg ctggctgtac gccggaggag
     3721 gagaaaggcc tgcaggatta tgggcgctat ctcggcactg ctttccagtt gatcgacgat
     3781 ttactcgatt acaatgccga tggcgaacag ttaggtaaaa acgtcggcga cgatctgaac
     3841 gaaggtaaac cgacgctgcc gctgctgcat gcgatgcatc atggcacacc agaacaggca
     3901 cagatgatcc gtaccgccat cgaacagggt aacggtcgcc atcttctgga accggttctg
     3961 gaagcaatga acgcttgtgg atctcttgaa tggacgcgtc agcgcgccga ggaagaagca
     4021 gacaaagcca tcgcagcgtt acaggtgctc ccggacaccc cttggcgaga agcactcatc
     4081 ggcctcgcgc acatcgctgt tcaacgcgat cgttaatccc ctcccttcat cccgcgcagt
     4141 gcgcgggatg attccagtaa attccataaa aacactaatt cagcgctata acacctgaaa
     4201 aaaaaagggc gatgaatctt tatatattct gaatattcac actctttaca ggaacttttt
     4261 agagcaatag gccatcagga gtatagtgat gcccgacaga agaagtgttc tgaatgaaag
     4321 cgactaactt aaggagtgag gaaagatgga aagtaatttc attgactggc atccccctga
     4381 catcattgca ggtttgcgca agaaaggaac gtcaatggcg gcggaatctc gcagaaatgg
     4441 tttgagttcc tcaacgctgg caaacgcatt atcgcgccca tggccgaaag gagagatgat
     4501 tattgcgaaa gccctgggaa ctgacccctg ggttatctgg ccatcacgct accatgatcc
     4561 gcagacccat gagtttatcg acagaacgca gttgatgcgt agctacacta aaccgaaaaa
     4621 atgagtggtc tggcggtagc cccgcgaacg gggctgccag ctctcagacg attactcgcc
     4681 tttcacacgc ttaatatttg cacctaaagc gcgcagtttg tcttcaatgc gttcgtagcc
     4741 acgatcgatg tgataaatac gatcaaccac cgtcgtccct tccgcaatac agccagccag
     4801 caccaggctt gctgatgcac gcagatcggt tgccataacc tgtgcaccag aaagtttttc
     4861 aacaccatga caaataacgg tattgctttc gatttcggca tgcgcgccca tacggctaag
     4921 ctccggcaca tgcataaagc ggttttcaaa gaccgtttcg gtgatgaatc cggtcccttc
     4981 tgccaccagg ttcaacagcg tgaactgggc ctgcatatcg gtcgggaatg ccggatgcgg
     5041 cgcggtacgt acgttaacag ccttcggacg tttgccatgc atatccaggc taatccagtc
     5101 ttcgccgact tcgatgtccg ctccagcgtc acgcagtttc gccagcacgg cgtcgagagt
     5161 atctggctgc gcgttacggc agataatttt gccgcgagaa atcgccgccg ccaccaggaa
     5221 agtaccggtt tcgatacgat ccggtagcac gcgatagaca ccgccgccta aacgttccac
     5281 accttcgatg acgatacgat cggtgccctg accgctaatt ttcgcaccca gcgtaatcag
     5341 gaagttcgcg gtatcgacga tttccggttc acgcgctgcg ttttcaataa tcgtggtacc
     5401 ttccgccagg gttgcagcac acatgatggt caccgttgcg ccaacgctga ctttatccat
     5461 cacgatatgt gcgcctttca gacgaccatc gacggaagct ttaacgtaac cttcttccag
     5521 tttgatggtc gcgcctaatt gttcgaggcc agaaatgtgt agatcaaccg gacgcgcacc
     5581 gatcgtacaa ccgccaggca gtgaaacttg cccctgacca aagcgcgcta ccagcggccc
     5641 cagtgcccag atagaagcac gcatggtttt aaccagatcg taaggtgcgc agaatacatt
     5701 aacgtcgcgg gcatcaatat gcacagaacc attacgttct actttcgcac ccagctgact
     5761 tagcagcttc attgatgtat cgacgtcttt cagtttcggg acgttctgga tctctaccgg
     5821 ttcttccgcc agtagagcgg caaaaaggat aggcagagca gcatttttag cgccggaaat
     5881 tgtgacttcg ccctggagct tcgttggccc ctgaacacga aatttatcca tttagtttgt
     5941 tctcagttaa caattcatat ccgctaccgg cgaatcgccc atagctcaaa agccgttcag
     6001 tttgcgatcg cgcgcccact ccgcaggggt atacgctttg atcgacacag catgaatgcg
     6061 gttatccgca atatattcca tcagcgggcc atagaccgtc tgctgttttt taacccgact
     6121 catgccgtca aacaactcac ccacggcaat aacctgaaag tggctgccat cgccggaaac
     6181 gtggacttcc tggagggaga gagcgttcat caacacgctc tgaatttcat tattttccat
     6241 gggatcttca atcatcagtt aataaaccag cgaaacatct tagagcaaag ttgcgctggc
     6301 ataaataagc aaaaagcctc gctgataaat cagacaaggc tcgacttgca ggcaggtttg
     6361 ccggacaggc ggttaacgcc atatccggcc tgaaaaaatt taacgaggca gaacatcagc
     6421 aggcaaatta tacaatttcg ccagggtata cactttgtcg tttaccccct gaagcgtcac
     6481 attgttgccc tgctttttcg ccagatcgat aagctggagc agcagtgcca gtccccccgt
     6541 atccacgcgg gacacacggc taagatcgat gcaggtaatc cccttcaccg cttcctcacg
     6601 catttcccaa agcggtagca aaacgtcctg atccagctct ccggataacg ccagcgtgtc
     6661 acccgtctgc atccagctca gtgactcgct cattattttt tctcttccag agtgattttc
     6721 tgttgagaaa tcgatttcag ttgcgcagtc aggccgtcga tacctttggt acgcagcagc
     6781 gttccccact cgttttgttt ggtggtgatc atactgacgc cttcagcaat catgtcgtaa
     6841 gcctgccagt tgcccgtctg ggagttttta cgccactgga agtccagacg caccggcggg
     6901 cggccattcg gatcaataat ggtaacgcga atcggcacaa tggttttatc gcccagcggc
     6961 tgttctggcg caatctgata ggtttgacca tgatacatcg ccagcgcctg accgtaagcc
     7021 tgcttcaggt actcacggaa agcggcaaag taggcttcac gttgagcagg ggtcgcactc
     7081 ttgtaatact ggcccagcac cagcgcaccg gcgtatttca cctgtacgta tggcagcagt
     7141 tcctgatcaa caatggtacg cagataatcc gggttggccc gaatttgcgg ttgctcattc
     7201 ttcaggcgat cgaacgtttt ctgcgccgcc tcgtccatca gcttataagg attggtctgg
     7261 tctgccgcgg ttgccgcact cagcggtgca atcaccagca aagcgaccat cattaaacgt
     7321 ttaaacatgc gtcggttctc ctgaaattat ttcgttgtac ccacaggttc agtggtttca
     7381 ttattacctg gcgcagcagc tggcgcatcg ccactattct tattgtcatc gcctttacta
     7441 ccgtaaagga actgaccaat gagatcttcc agcaccatcg cagacttagt gtcctgaatt
     7501 gtatcgccat ccttcaggat agcagtcccc agttccgggt cttcaaaacc gacgtttaat
     7561 gccagatatt gttcccccag taggccggaa gtacgaatgc tcagcgaact ggtatctgga
     7621 atgtggttat aacgttgttc aatttccagc gttacgcgtg gcagataggt tttcgggtcc
     7681 agcgtaatat ccgccacccg gcccacaaca acgccaccaa tactgaccgg agagcgcgct
     7741 ttcaggccgc caatgttatc gaacgtcgca taaagcgtgt aggtcggttc agtacgtatg
     7801 gacgtcacgt tcgccgcctt caggcaaaca aacagagccg ccagcagtgc tgctaataaa
     7861 aagataccca cccaaatttc attttttttc gtttgcatgt actcaattcc caaacatcaa
     7921 tgcggtcagc acaaaatcca gccccagaac agccagagac gagtggacaa cggtgcgagt
     7981 ggttgcccgg ctaatcccgg cagacgtcgg gatggcgtcg tagccgttaa acaacgaaat
     8041 ccacgtcacc gtgatggcga acaccacgct cttaatcaga cagttgacca gatccatacg
     8101 ccagtcgacg gcattttgca ttgccgacca gaagaacccg ctatcaatgc ctttccaact
     8161 gacgccgacc agagatccgc cccagatccc cacggcgacg aaaataaccg tcaacagtgg
     8221 taatgaaata accccagccc agaaacgggg agaaataacc cgacgcagcg gatccaccgc
     8281 catcatctcc atactggaga gttgctctgt agcgcgcatc aggccgattt ctgcggttag
     8341 cgccgaacca gcacgcccgg caaacaacaa cgcggcaacc accggcccca gttcacgcag
     8401 tagcgataac gccaccagca tacccagact ggtttccgca ctataagtgg tcagaaccag
     8461 ataaccttgc agccccaaca ccattccgat gaacacgcca gaaaccacaa taatcagcat
     8521 cgacaggacg ccgacattat agagctggcg caccagcagc ggcgcatgtt tgcgaaattc
     8581 cggtttgccg accagcgcat tgaataacat taacccggcc cgcccgaacg ttctcagggt
     8641 tttaatccct ttatgtccga gcgacgccag cgcatttaac agcatgagtg gcttaactcc
     8701 ctggtaaaag atcagcgtga taatcgccgg caggatagcg gaacggaaca ggcccgtcag
     8761 ctatcccgtc cagaaactga cgtacgcgcg gatcaggatt cgcctgcaac gcctgggcac
     8821 tgccatgagc gacaattttt ttgtccgcca ggatccaggc gtgatccgca atacttaaca
     8881 cttccggcac atcgtgagaa accaccacac aagtcacgcc cagcgcgctg ttcagctcag
     8941 aaatcagctt caccagtacg cccatggtga tgggatcttg cccaacaaaa ggttcatcaa
     9001 acatgatgag atccggctcc agcgcaatcg cacgcgccag cgctgcacgc cgcgccatcc
     9061 caccggaaag ttcagaaggc attagtttag ccgctccacg cagccccacg gcctccagct
     9121 tcatcatcac cgtactatgc aacaatggcg cgggaagttg ggtatgttcg cgcagtggat
     9181 aggcgacgtt gtcaaatacg ttcatatcag tgaacaacgc cccggactga aataacatgc
     9241 tcatccgttt gcgcactgta tacaggcgcg aacgagacat cgccggaata ttctcaccat
     9301 cgaaaaggat ctcaccatga tctggtgcga tttgcccgcc aatcagacgg agtagcgtcg
     9361 ttttaccgat gcccgatggc cccatgatcg ccgtgatctt ccctcgcggc acggtcaggg
     9421 aaatattatc gaagatgcag cgattgccac gcgtaaaact gacatcgcgc atatcgacta
     9481 aattcgccac agactgctcc ataattcacc cttcgtcttg cgttgatttt ctaagcatgg
     9541 cgctcaattt aaccttgaac ccaacatatt tacagaatat tacccgccgt ggttagcgaa
     9601 agctggcatt tgttttactt tttagccgca taaagtcaaa attaagaatc cgttacggct
     9661 ttctgaaaat cttcagcgga ccggcgagta tacctgaaga aaggacgtta gatgctttta
     9721 gctacggcac tgttaattgt tggtttactt ttggtcgttt acagtgccga ccgcctggtt
     9781 tttgccgcgt ctattctttg ccgaaccttt ggcatcccgc cgctgatcat cggcatgacg
     9841 gtggtcagta ttggtacatc gttaccagaa atcatcgtct cgcttgccgc gtctctgcac
     9901 gaacaacgcg atttagccgt tggtacagcc ctcggctcaa acattatcaa tattttgctg
     9961 atcctcggtc tggctgcgct ggttcgtcct tttaccgtcc attccgatgt tctgcgtcgt
    10021 gaattaccct taatgttgtt ggtcagcgta gtggccggtt ccgtactcta tgacggacaa
    10081 cttagtcgca gcgatggtat ctttctcctc tttctggctg tgctatggct gctgttcatt
    10141 gttaaacttg cacgtcaggc tgaacgtcag gggactgaca gcctgaccag agagcagctt
    10201 gcagagctgc cgcgtgacgg cggattgccc gtcgcgtttt tatggctcgg cattgcgctt
    10261 atcatcatgc cagtggccac gcggatggtg gttgataacg ccacggtgct ggcgaattac
    10321 tttgccatca gcgagttgac gatgggtctg acggcaattg ctatcggaac cagcctgccg
    10381 gaactggcaa ccgcaatagc gggggttcgc aaaggtgaaa acgacattgc tgtcggaaat
    10441 atcattggcg caaacatttt taatattgtc atcgtgttgg gtttacccgc gctgataaca
    10501 ccaggagaga ttgatccatt ggcgtacagt cgtgactaca gcgtgatgtt gctggtgagc
    10561 attatttttg cgttgctgtg ctggcggcgc tccccgcaac cgggccgtgg tgtaggggta
    10621 ttattaactg gcggatttat cgtatggctg gcgatgttgt actggttatc gccaatactc
    10681 gttgaataac tggaaacgca ttatgtcgca cgtagagtta caaccgggtt ttgactttca
    10741 gcaagcaggt aaagaagtcc tggcgattga acgtgaatgc ctggcggagc ttgatcaata
    10801 catcaatcag aatttcacgc ttgcctgtga aaagatgttc tggtgtaaag ggaaagttgt
    10861 cgtcatgggg atggggaaat cggggcacat cgggcgcaaa atggccgcaa cgtttgccag
    10921 caccggtaca ccttcatttt tcgtccatcc tggtgaagcc gcgcatggtg atttaggcat
    10981 ggtcacccca caggatgtgg tgattgctat ctctaactca ggtgaatcca gcgaaatcac
    11041 ggccttaatt ccagtgctta agcgtcttca cgtaccgtta atctgcatca ccggtcgccc
    11101 ggagagcagc atggcgcgcg ccgcagatgt gcatctgtgt gttaaagtag cgaaagaagc
    11161 ctgtccgtta gggctggcac cgaccagcag caccaccgcc acgctggtta tgggcgatgc
    11221 cctcgctgtc gcgctgttaa aagcacgcgg ctttactgct gaagattttg cgctctcaca
    11281 cccaggcggc gcactgggtc gtaaacttct gctgcgcgta aacgatatta tgcatacggg
    11341 cgatgagatc ccgcatgtta agaaaacggc cagtctgcgt gacgcattgc tggaagttac
    11401 ccgcaaaaat cttggtatga ctgtcatttg cgatgacaat atgatgattg aaggcatctt
    11461 taccgacggt gatttacgcc gtgtcttcga tatgggagtg gatgttcgtc agttaagtat
    11521 tgccgatgtg atgacgccgg ggggaatacg cgtgcgccct ggcattctgg ccgttgaggc
    11581 actgaactta atgcagtccc gccatatcac ctccgtgatg gttgccgatg gcgaccattt
    11641 actcggtgtg ttacatatgc atgatttact gcgtgcaggc gtagtgtaaa gattcaagga
    11701 taaacaacaa tgagcaaagc aggtgcgtcg cttgcgacct gttacggccc tgtcagcgcc
    11761 gacgttatag caaaagcaga gaacattcgt ctgctgatcc tcgacgttga tggcgtactg
    11821 tcagatggcc tgatttatat gggcaataac ggcgaagagc tgaaagcgtt caatgttcgt
    11881 gacggttatg gcattcgttg tgcgctcacc tctgatattg aagtcgctat cattaccggg
    11941 cgaaaggcta aactggtaga agatcgttgt gccacattgg ggatcactca cttgtatcag
    12001 gggcagtcaa acaaactgat cgcctttagc gaactgctgg aaaaactggc gattgccccg
    12061 gaaaatgtgg cttatgtcgg cgatgatctc atcgactggc cggtaatgga aaaagtgggt
    12121 ttaagcgtcg ccgtggccga tgctcatcca ctgttgatcc cgcgcgccga ttatgtgacg
    12181 cgcattgctg gcggtcgtgg cgcagtgcga gaagtttgcg acttattact cctggcgcag
    12241 ggcaaactgg atgaagccaa agggcaatcg atatgagtaa agccagacgt tgggttacca
    12301 ttgtgctatc actggcggtt ctggtgatga tcggcattaa tatggccgaa aaagacgata
    12361 ccgcccaggt ggtcgtcaac aacaatgatc ccacctataa aagcgagcat acggacacgc
    12421 tcgtctataa cccagaaggg gcactaagct atcgattgat tgctcaacac gttgaatatt
    12481 attccgatca ggccgtttcg tggtttacgc agccggtact taccacgttt gataaggata
    12541 aaatcccgac atggtccgta aaagcagata aagccaagct gaccaatgac cggatgctct
    12601 atttatatgg acacgttgaa gtcaacgcac ttgtgccgga ctctcaactt cgcagaatca
    12661 cgacggataa cgcgcagatc aatctggtga cgcaggatgt tacctctgaa gacctcgtca
    12721 cgttatacgg aacaacattt aactccagcg gtctgaaaat gcgcggcaac ttacgcagca
    12781 agaacgccga gctgattgaa aaggttagaa catcctatga aattcaaaac aaacaaactc
    12841 agccttaatc ttgtgcttgc cagctcactt ctggccgcca gcattccggc atttgccgta
    12901 accggagaca ctgatcagcc gatccacatt gaatcggacc agcaatctct tgatatgcaa
    12961 ggcaacgtgg ttacctttac cggtaatgtc atcgtcaccc agggcaccat caaaattaat
    13021 gccgacaaag tggtcgttac ccgtccgggc ggcgaacaag gtaaagaagt gattgacggc
    13081 tacggtaaac cggcaacgtt ctaccagatg caggacaacg gtaaacccgt tgaaggtcat
    13141 gcttcccaga tgcactacga actggcaaaa gattttgtcg ttctgacggg taatgcttat
    13201 ctgcagcagg tcgatagcaa cattaagggc gataagatca cttacctggt gaaagagcag
    13261 aaaatgcagg ctttcagcga caaaggcaag cgcgtaacaa ccgttctggt gccgtcgcag
    13321 ctgcaggaca aaaacaacaa aggccagacc ccggcacaga agaagggtaa ttaattcgtt
    13381 atggcaacat taactgcaaa gaaccttgca aaagcctata aaggccgtcg cgtggtagaa
    13441 gacgtcagcc tgaccgtcaa ctccggggaa attgtcggtc tgctggggcc aaacggtgcc
    13501 ggtaagacca ccactttcta tatggttgtt ggcattgtgc cgcgcgatgc gggcaacatc
    13561 attattgatg atgacgatat cagtctgctg cctctgcatg cacgcgcgcg ccgcggtatc
    13621 ggctatctgc cacaggaagc ctccattttc cgtcgcctca gcgtttacga taacctgatg
    13681 gcggtactgc aaattcgtga cgacttgtct gctgaacaac gtgaagaccg cgcgaacgag
    13741 ctgatggaag agtttcacat tgagcacctg cgtgacagca tggggcagtc actctccggg
    13801 ggtgaacgtc gccgtgtaga aattgcccgc gcactggctg cgaatccgaa atttattcta
    13861 ctcgacgaac cgtttgccgg ggttgacccg atctcggtta tcgacattaa acgcatcatt
    13921 gaacacctgc gcgacagcgg cctgggcgta ctgatcactg accacaacgt gcgtgaaaca
    13981 ctggcggttt gtgaacgcgc ttatatcgtc agtcaggggc atttgattgc ccacggcacg
    14041 cctacagaaa tcttacaaga cgaacacgtt aagcgtgtat accttgggga agacttcaga
    14101 ctctgatagg gtagaagttt gcgacgtttt agcaggagag tacgattctg aacatgaagc
    14161 aaggtttgca actcaggctt agccaacaac tggcgatgac gccacagctt caacaggcga
    14221 ttcgtctgtt gcagttgtcg acgctggaac ttcagcagga gctacagcag gcgctggaga
    14281 gtaatccgct gcttgagcaa atcgacactc atgaagaaat cgacaccagc gaaacgcaag
    14341 acagtgaaac gctggacacc gccgacgcgc tcgaacaaaa agagatgccg gaagagctgc
    14401 cgctcgatgc cagttgggac accatttaca ccgctggtac accatccggc accagcggtg
    14461 actacattga cgatgagctg ccggtctatc agggcgaaac gacgcagacc ttgcaggatt
    14521 acctgatgtg gcaggtcgag ctgacaccgt tttccgacac tgaccgcgct attgctacct
    14581 ctatcgtcga tgccgttgat gacaccggtt atctgactgt cccgctggaa gatattctcg
    14641 aaagtatggg cgatgaagag atcgacatcg acgaggttga agccgtcctt aagcggatcc
    14701 aacggtttga tccggtcggt gtagcggcaa aagatctgcg tgactgcctg ctaatccaac
    14761 tctcccaatt cgataaaacc acgccgtggc tggaagaggc cagactgatc attagcgatc
    14821 atctcgatct gttagccaat cacgacttcc gcactttaat gcgcgtcacg cgtctgaaag
    14881 aagatgtgct gaaagaagcc gtcaatctga tccagtcgct cgatccgcgc cccgggcagt
    14941 cgatccagac tggcgaacct gagtatgtca ttccagatgt gctggtgcgt aagcataacg
    15001 gtcactggac ggtagaactc aacagtgaca gcattccgcg tctgcaaatc aaccagcact
    15061 acgcctcgat gtgcaataac gcgcgcaacg atggtgacag ccagtttatc cgcagcaatc
    15121 tgcaggatgc caaatggttg atcaagagtc tggaaagccg taacgatacg ctactgcgcg
    15181 tgagtcgctg tatcgttgaa cagcagcaag ccttctttga gcaaggtgaa gaatatatga
    15241 aaccgatggt actggccgat atcgcccagg ctgtcgaaat gcatgaatcg acgatatctc
    15301 gcgtgaccac gcaaaaatac ctgcatagtc cacgaggcat ttttgaactg aagtatttct
    15361 tttccagtca cgtcaatacc gagggcggcg gcgaagcttc ctccacggcg attcgtgcgc
    15421 tggtgaagaa attaatcgcg gcggaaaacc cagcgaaacc gttgagcgac agcaagttaa
    15481 cctctttgct gtcggaacaa ggtatcatgg tggcacgccg cactgttgcg aagtaccgag
    15541 agtctttatc cattccgccg tcaaaccagc gtaaacagct cgtttgaccc aaccgataag
    15601 gaagacacta tgcagctcaa cattaccgga aataacgtcg agatcaccga ggcactgcgc
    15661 gaatttgtta gagccaaatt tgccaaactt gagcaatatt ttgaccgaat caaccaggtc
    15721 tatgttgttc tgaaagtgga gaaagtcacc cacacctcag atgcaacact gcatgtaaac
    15781 ggtggtgaaa ttcatgccag cgcggaaggt caggacatgt acgctgccat tgatggctta
    15841 attgataagc tggcacgcca gttgaccaaa cataaagata aactgaaaca acactaattg
    15901 tccgggcaat tagcatgtgc atggcggcct gttgtgcggc acaacgggcc atttgtacgg
    15961 ttaatgctcc gagcctgttc cactgtttga gtgggcaggt tcttaggtga aattatgaca
    16021 aataatgata caactctaca gcttagcagt gttcttaaca gggaatgtac gcgaagccgc
    16081 gttcactgtc agagcaaaaa acgcgccctg gaaatcatca gcgagctggc ggcgaaacaa
    16141 cttagcctgc cgcctcaggt ggtttttgaa gctatcctga cgcgggaaaa aatgggcagt
    16201 accggtatcg gcaatggtat tgccattccg catggcaaac tggaagaaga tactctgcgc
    16261 gccgttggcg ttttcgttca gctcgaaacg cctatagctt tcgatgccat cgacaaccaa
    16321 ccggtggact tactttttgc cctgctggtg ccggcagacc aaactaaaac gcacctgcat
    16381 actctgtcgc tggtggcgaa acgtctggcg gacaaaacca tctgccgccg tttacgcgca
    16441 gcccagagcg atgaagagct gtatcaaatc attacggata ccgaaggtac tccggatgaa
    16501 gcgtagttat tcggtaatgt ctcttttaga cgttgtgagg agaaacagta catggtactg
    16561 atgatcgtca gcggacgttc aggttcaggt aaatctgtcg ccctgcgtgc gctggaagat
    16621 atgggttttt actgcgtgga taaccttccc gtagtgttgt tacccgatct ggctcgaacc
    16681 ctggccgatc gcgagatttc tgccgccgtc agcattgatg ttcgtaatat gccggagtca
    16741 ccagaaatat tcgaacaggc gatgagtaac ctgcctgacg ctttctcacc gcaactcctg
    16801 ttcctggatg ccgaccgtaa taccttaatt cgtcgttaca gtgacacgcg ccgactgcat
    16861 ccgctttcca gcaaaaacct gtcgctggaa agtgctatcg acaaagaaag cgatttgctg
    16921 gagcctctgc gttcgcgagc ggatctgatt gtcgatacct cagaaatgtc cgttcacgag
    16981 ctggctgaaa tgctgcgtac ccgtctgctg ggtaaacgtg aacgcgaact gaccatggtc
    17041 tttgagtctt tcggcttcaa acacggtatc cctatcgatg cagattacgt ctttgacgtg
    17101 cgcttcttgc cgaacccgca ctgggatccg aaactgcgtc caatgacagg tcttgataaa
    17161 cctgtcgccg cgttcctcga ccgccacaca gaagtacaca attttatcta ccagacgcga
    17221 agctatcttg agctatggtt acctatgctg gaaaccaaca accgtagcta cttgacggtc
    17281 gccattggtt gtaccggcgg gaagcaccgt tcggtgtata ttgcagagca actggcagac
    17341 tacttccgct cgcgcggtaa aaacgtccag tcacgccatc gtacgctgga aaaacgtaaa
    17401 ccatgaccgt caagcaaact gttgaaatca caaacaagct gggcatgcat gcccggcctg
    17461 caatgaagct gtttgaatta atgcagggtt ttgacgctga agtgctgtta cgtaatgacg
    17521 aaggcaccga ggccgaagcc aacagcgtta ttgcgctgct gatgttggat tctgccaaag
    17581 gacggcagat tgaagttgaa gcgaccggcc cacaggaaga ggaagcactg gccgccgtta
    17641 tcgccctctt taactctggt tttgatgaag attaatcttc atcactttga catacaactc
    17701 ccttcaaact ccccccgaca ataagaaaat cacgtactga aatcgttctc aatcaacgtc
    17761 atttgtacat tttgtgcgct tttcactttc agaagaacct taagaaaacc ttaagaggca
    17821 ttgtttaggt tttgtttaag ttaatcgacc atactggaga tcgtcagaaa atatttccag
    17881 gagatggcat gattcgctta tctgaacaaa gtcccctggg caccggaaga catcggaaat
    17941 gttatgcgca tccggaagat gcccaacgct gtatcaagat tgtctaccat cgtggcgatg
    18001 gtggcgataa agagatccgc cgtgagttaa agtactacgc gtatcttggt cgccggttaa
    18061 aagactggag tggaataccg cgctatcacg gtaccgttga gacggattgc ggaaccggtt
    18121 atgtctacga tgtgattgca gattttgacg gcaaaccctc cattacgctg accgaatttg
    18181 ctgaacaatg ccgttacgaa gaagacattg cacaactgcg ccagctactg aaacagctga
    18241 agcgttattt gcaggataac cgtatcgtga cgatgtcgct gaagccgcag aatatcctct
    18301 gccaccacat cagtgagtca gaggttatcc cggtcgtctg cgacaacatt ggtgaaagca
    18361 cattgattcc actggcgacc tggtcgaagt ggtgttgtct gcgtaagcaa gagcggttat
    18421 ggaaacgatt tatcgcccaa ccggcgctgg ctattgccct gcagaaagat ctgcaacctc
    18481 gtgagagcaa aacgctggcc ctcacttcgc gcgaagctta atccagctgg tgttgttgca
    18541 taaacggctc accgcctaac tgatacatct gccgtaaaat ccacgcctga cggctacgca
    18601 cgtagcccga tggcgaggag actttgaaac gaagtggatt aggtaataca gctgccagta
    18661 atgcagcttc cgaccgggta agtttgctcg cgggtttgtg gaaataacgt tgtgccgcag
    18721 cttcgacgcc aaacacaccg tcgccaaatt cggcgatatt caggtaaacc gtcaggatac
    18781 gctttttgct ccagactgtt tctatcccca gcgttaatcc agcttccagc ccttttcgta
    18841 cccagctacg cccatcccat aaaaagagat ttttggccgt ctgctgagaa atcgttgaag
    18901 caccgcgaat acggttttca ttgcgctcgt tgtgcgccag ggctttctca atggaagcga
    18961 catcaaagcc ccggtgctca ggaaatttct gatcttctgc ggcaatcacc gccagtccca
    19021 tccacggcga gatttgatcc atactgaccc agtcagaatg tgccacgtaa cgaaaattgc
    19081 catgcagcca ggcgctgacc tgtcgctcga ccattaccgc tgagaaggga acaggcgcaa
    19141 cactaaacaa cgcgatgccc ccgccccaga aaacggcgag gacaaccatt aaccgcaaaa
    19201 gaaaacggcg aacgaaacta aacaccgtta agcggctttt actcattcag ccagaaccag
    19261 cacgcgggaa accagcttat caatgccgct cgccgcttct gcaatgttct gcgccagcat
    19321 atatgctggg gtggtgacaa tcttattgtc ttcatcaacc acgatatcat cgacaggaca
    19381 gggcacatgc tccgcgccca tctcttccag cacttctgcg gtatcgatat cagtaccgat
    19441 ggtcaaacgc agcgggaaat cgaaaatttt cggcagcatc gccggggcaa tacacataaa
    19501 accaagcggt tttccggcct gatgcatcgc ttgtgccagc gcctttaatt cacggtcaac
    19561 ggtgcattcg ctaccaagag tggcaaaatt gcttaaattc ttcgccgcgc caaacccccc
    19621 cggcacaatc aacgcatcca gttcagcggc atcggcctgg gccagaggac ggatttcacc
    19681 gcgcgttatt cgtgccgctt caatcagcac gttgcgcgtt tccgtcatcg cttcgccagt
    19741 taaatggttg ataacatcaa cctgctgctt atcaggtgca aagcagaccg cctgcgcacc
    19801 gctgcgtgaa atagctaaca acgtcaacac cgcttcatga atttcagaac cgtcatagac
    19861 gccgcatccg ctcagaatta cgccaatttt cttcattgtg atcatccttt cgcaattgac
    19921 tgaaacacat taattttttt aataaaaatg gtacgcatca cacatttaac tgattcatgt
    19981 aacaaatcat ttaagttttg ctatcttaac tgcgtgcggc ctgaaaaaca gtgctgtgcc
    20041 cttgtaactc atcataataa tttacggcgc agccaagatt tccctggtgt tggcgcagta
    20101 ttcgcgcacc ccggtctagc cggggtcatt ttttagtggc ttttgccacc cacgctttca
    20161 gcacttctac gtcgtgacgc cactcttctt tcatctcttc aatccattca ccgacgttat
    20221 cttcccaggc aggaaggtca ggagactgaa tttgctgacc cagctgttgc agatggcgta
    20281 accccactga ccccgccgca cctttaattt tatgtccttc ctcaacaatg ccttttttat
    20341 cctgcgccgt cagattcgac tccagcacgc tgacatagcc cggcatcatc ttctcaaaca
    20401 ccgctaaccc gtcggtgatc agcttcggtc ctacaagttc gagatactgt tccagcatgg
    20461 gaatatcgag caatgcttct gatttactgt tctcttctgt cgtcaccgta ctctcctcat
    20521 catcctgggt atcccagaat ttcttgatca tcgcggttag cgccggaacc gaaagcggct
    20581 tactcagcac atcatccatt ccagcattga ggtactcttg tttgtctttc agcacgttag
    20641 cggttaaggc caccagcggc ggtaaatcct cgcgcggata acgcttcgtc agttcacgag
    20701 agatatccag cccggtcata tctggcaact gaatatccag caacaccagg tcgtattcgc
    20761 ccggtttaaa catctccagc gccgccttgc cggtcatggc gacatcaacg ctgttaccta
    20821 atttttccag cacagaacgc gcaacaatca cgttcagttc aatgtcttcc accagcagca
    20881 cattcagcgc cggtaaaggc atatcgtctt catcaaacgc atcatcgacc tcttctgcta
    20941 ccgacggtgc gtggatcgtc aacgtaaagg ttgaaccttt gccctgttcg ctggtaaccg
    21001 taatatcgcc gcccatattt ttcgccagac gacgagaaac ggccagacca ataccggtgc
    21061 cggtggcagg tttaccgcca tgactgtctt tcacctggta atacatggcg aaaattttat
    21121 ccagctcatc ctgcggaatg ccgataccag agtcttccac ttcaaaatgc agcatatcgc
    21181 cttcatcgta gcgcacgcgc acggtaacct ggccttgctg ggtgaatttg acggcgttac
    21241 tgatgaggtt ccacaggatc tgccgtaaac gcgtcccgtc ggtaatgacc tgatgcggta
    21301 atggcagcgt cggctccagg ttaaagcgca atcctttttg ttgcgcctgc aatgcggaga
    21361 gattttccag atcggcaagg aagctggtga aatcaaccgg ttgattatca agctggacct
    21421 tgcgccgttc catcttatcc atgtcgataa tatcgttaaa gatattcccc agcgtgacgg
    21481 ccgaaacatg gatggtcttg agatattttt cctgctcggc ggtgagttcg gtatccagca
    21541 gaatgcggct cagaccgacg ataccgttca gcggtgtacg caattcgtga ctgatggtgg
    21601 agataaacgt cgttttgtcg cggctggccc gttcaagcgc atcctgatac cgcttacgct
    21661 cggtaatgtc gcgaccaaag cccatcaaac cgtgacgttt acccacgcgg tcgtagtacg
    21721 gcactttacg gatttcaaag caggctttgc gcccgtccgg gtaatccagc cactgttcat
    21781 aggtcagtga cacattatga cggaacactt tttcatcggt ttcaatgact tttgcggcgg
    21841 cttccggtga gtaaacatca gcaggtttca ggtgaaccag ttgtttttcg ctttttccgg
    21901 tcagcagctc catcgcgcgg ttacagccgg aaaactcttt atcttcgtta cgataaaaaa
    21961 ccaggtcggg tgaagcatca aggaaggaac gtaagaatga ggattgctgc tcgagctgaa
    22021 tttgtgtctc ttcgcgctct ttgatttcaa ttttcagttg gccgaaggtt tcctgcagtt
    22081 ctgcttccgc tttttcacga acggcaattt cctgatttag ctgggcaata ttatctttta
    22141 actgaacgtt gaggctcaaa tcgcgctcgc gcatctcctc cagtttttgc accagccgtg
    22201 acagacgttg tcgtgactcc tccagttgct cgacgaccac cgatagaaag tagaccgccc
    22261 acggcgtaat cagcaaacca aagaagatag aacgaataac atcaatgctt tcgacctgac
    22321 catgcagcac catggttacc gccatttgta ccacaatggc aagaacgacg agggccagcg
    22381 ccagcaacat tgagaagcgc accagaccta acttcatcat caggtcaaca taatactgcg
    22441 ccagcagacg aatttgcttc attagggaat tccttcacga caacctgccc caataatacc
    22501 caattctgac agttacgtta taaattgtgt gagaaatgcg gaattcccct caacgaccta
    22561 ctccgttgga ggtagccacg gacgtcccag cgccgatccc tgtacgccat gttcattcag
    22621 atagcgatcc agctcgacca ttcccgtcca tcgattttcg caccacagcg gagcaagcag
    22681 cgtcgggcga cgggcgctgg cggaaatgcg gtggtagatc acttccggtg gcgtatggcg
    22741 aatcatttct ccggcagtga gcgtgtaatc ctccagttca ataccgttca aacgccccgc
    22801 ttcccaggct ttcgccataa tgctgccttt cacaatatgc agcggatgca gctttatgcc
    22861 gtccacgccg gtttcaacca ctcgctccag cgtttgcaaa cattcagcct gcccttcacc
    22921 aggcaggccg acaattaagt gggaacacac cttcagcccg cgctgacgtg ccagctgggt
    22981 tgtacgctga taacaggcaa aatcatggcc gcggttgatg cgatgcagtg ttttgtcgtg
    23041 ggcggtttgt agccccagct ccagccacac ttcgtaaccc tggtccttat attcgcaaag
    23101 cagatccagc accgcatccg gcacgcagtc cgggcgggta ccaacacaca aaccgacaat
    23161 attggcctgg ctcaccgcct gctgatacat agaacgcagc acctgaactt ccgcaaaggt
    23221 gctagtatac gcctgaaagt aggccagata gcgtttagcg cggttaacta aattcgcctg
    23281 gtgcgccagt tgctcggcaa tggaacgatg ctgctgcgct tcatcggcaa acgaggcaac
    23341 attacagaat gtgcagccac cacgcccgat ggtaccgtca cggttagggc agctaaaacc
    23401 gccgtgcagc gtcagcttat gcaccttttg cccataacga cgggtgagat caccaccaaa
    23461 catattgact aatttctgta actgcataat ctgatagacc gcgccttgaa aagaggccaa
    23521 agcctgccat ttttagctca attcggcgat gacctggatc aatcgtcccg gcctgctttt
    23581 atcaactgca taatcaatca aaattaccga aatttcatgc ataatcacat aaatcacttt
    23641 tgcttatctt gtgtcagatt tttttatctc cttatggatt ttaggcaaaa acagtagcat
    23701 gaaacgtcat taccaattaa ggcagtataa aatgctggtt ttctcgtcag ttcaaggtag
    23761 gataagggtt aacacgcctt tatgacagtc aggaattgac tgtttctcta acgacttccc
    23821 ttttagcctt aaagataaaa ttcattttaa tttcagttac ttaataaaga attttgcgct
    23881 aaagcacatt tctgtaccaa taagcttgcc atttgacctg tatcagcttt cccgataagt
    23941 tggaaatccg ctggaagctt tctggatgag cagcctgctc atcatattta tgcagtaatt
    24001 gagatcccct cttcaccgta ttaaccgatg cgaaaaggac aacaaggggg cgaatacgag
    24061 gcgcgcgtat gacacgcaac ccccgtcgcc acgctctttc tgtgcccgtg cgcagcggtt
    24121 cggaagtggg gttcccgcag agcctggggg aggttcacga tatgttgtac gataaatccc
    24181 ttgagaggga taactgtggt ttcggcctga tcgcccacat agaaggcgaa cctagccaca
    24241 aggtagtgcg tactgcaata cacgcactgg cccgcatgca gcaccgtggc gcgattctcg
    24301 ccgatggtaa aaccggtgac ggttgcggct tgctgttaca aaaaccggat cgcttttttc
    24361 gcatcgttgc gcaggagcgc ggctggcgtt tagcaaaaaa ctacgctgtc gggatgctct
    24421 tcctgaataa agatcctgaa ctcgcggctg ccgcacgccg catcgttgaa gaagagctgc
    24481 aacgcgaaac cttgtcgatt gtgggctggc gtgatgtccc cactaacgaa ggcgtgctgg
    24541 gtgaaatcgc cctctcctct ctgccccgca ttgagcaaat tttcgttaac gctccggcag
    24601 gctggcgtcc gcgggatatg gagcgccgtc tgtttatcgc ccgccgccgc attgaaaagc
    24661 gtctcgaagc cgacaaagac ttctacgtct gtagcctgtc gaatctggtg aacatctata
    24721 aaggtctgtg tatgccggcg gatctgccgc gcttttatct ggatcttgcg gacctgcgtc
    24781 tggaatcggc catctgcctg ttccaccagc gcttctccac taacaccgta ccgcgctggc
    24841 cgctggcgca gccgttccgc tacctggcgc ataacggtga aatcaacacc atcaccggta
    24901 accgccaatg ggcgcgtgcg cgtacctata aattccagac gccgcttatc cctgatctgc
    24961 acgacgccgc accgttcgtc aacgaaaccg gctctgactc cagttcgatg gataacatgc
    25021 tggaactgct gctggcaggc gggatggata tcatccgcgc catgcgtctg ttagtgccac
    25081 ccgcctggca gaacaacccg gatatggacc cggaactgcg tgccttcttt gactttaact
    25141 ccatgcatat ggagccgtgg gatggcccgg cgggcatcgt gatgtccgac ggtcgttttg
    25201 ccgcctgtaa cctcgaccgt aacggtctgc gtccggcgcg ctacgtcatc accaaagata
    25261 agctcatcac ctgcgcctct gaagtcggta tctgggatta ccagcctgac gaagtggtcg
    25321 aaaaaggccg cgtcgggcca ggcgaactga tggttatcga cacccgcagt gggcgtattc
    25381 tgcactcggc agaaaccgat gacgatctga aaagccgcca tccatataaa gagtggatgg
    25441 agaaaaacgt ccgccgactg gtaccgtttg aagatctgcc cgatgaagaa gtgggtagcc
    25501 gcgaattgga cgacgacacg cttgccagct accagaaaca gtttaactac agtgcggaag
    25561 agctggactc cgtaattcgc gtactgggcg aaaacggtca ggaagcggtc ggttcgatgg
    25621 gcgatgatac cccattcgcc gtgctctcca gtcagccgcg cattatttac gactacttcc
    25681 gccagcagtt tgcccaggtg actaacccgc caatcgaccc gctgcgtgaa gcgcatgtta
    25741 tgtcgctcgc caccagtatc ggtcgtgaaa tgaacgtctt ttgcgaagca gagggccagg
    25801 cgcaccgttt aagctttaaa tcgccgattc tgctctactc cgatttcaaa cagctcacga
    25861 cgatgaaaga ggagcactac cgcgcagata cgctggatat cacctttgac gtcactaaaa
    25921 ccacgctcga agcgacagtc aaagagctgt gcgacaaagc cgaaaaaatg gtacgtagcg
    25981 gcaccgtgct gctggtgctc tccgaccgga atatcgctaa agatcgcctg ccggttccag
    26041 ccccgatggc ggttggcgcg atccagaccc gtctggtcga tcaaagcctg cgttgcgatg
    26101 ccaacatcat cgtcgaaacc gccagcgccc gcgatccgca ccacttcgcc gtgttgctgg
    26161 gcttcggcgc gacggctatt tatccatacc ttgcctatga aacgctgggc cgcctggtag
    26221 acacccatgc gattgccaaa gattatcgta ccgtgatgct caactaccgt aacggcatca
    26281 acaaaggctt gtacaaaatc atgtccaaaa tgggcatctc caccatcgcc tcttaccgct
    26341 gctcgaaact gtttgaagcg gtcggtctgc acgatgatgt agtgggcctg tgcttccagg
    26401 gggcggtcag ccgcattggt ggggcgagct ttgaagactt ccagcaggat ctgctgaacc
    26461 tgtcgaaacg tgcctggctg gcgcgtaagc ccatcagcca gggcggcctg ctgaaatacg
    26521 tccacggcgg cgaataccac gcttacaacc cggacgtggt gcgcacgctg caacaggcgg
    26581 tacaaagcgg cgagtacagc gactatcagg aatacgcgaa gctggttaat gagcgtccgg
    26641 caaccacgct gcgcgatctg ctggcaatta cgccgggtga aaacgcggtc aacattgctg
    26701 atgttgaacc ggcaagcgaa ctgtttaaac gctttgatac cgccgcgatg tctatcggcg
    26761 cgttaagccc ggaagcccac gaggcgctgg cggaagcgat gaatagcatc ggcggtaact
    26821 cgaactccgg tgaaggcggc gaagacccgg cgcgctatgg cactaacaaa gtgtcgcgca
    26881 tcaagcaggt ggcttctggt cgcttcggcg ttactccggc gtatctggtc aatgccgacg
    26941 tcattcagat taaagtcgcc cagggcgcga agccgggcga aggcggtcag ttgccgggcg
    27001 acaaagtcac tccttacatc gccaaactgc gctattcggt gcccggagtg acgctgatct
    27061 ccccgccgcc gcaccacgat atctactcta tcgaggactt agcgcagctc attttcgacc
    27121 tcaagcaggt taacccgaaa gcgatgatct ccgtgaagct ggtttccgaa ccgggcgtag
    27181 gcaccatcgc gactggcgtg gcaaaagctt atgccgattt aatcaccatc gcaggctatg
    27241 acggtggcac cggcgcaagc ccgctgtcgt cagtgaaata cgcaggttgc ccgtgggagc
    27301 tggggcttgt tgaaacccag caggcgctgg ttgccaatgg tctgcgtcat aagatccgtt
    27361 tgcaggtcga tggcggcctg aaaaccggtg ttgatatcat caaagcggcg attctcggcg
    27421 cagaaagctt cggcttcggc actggcccaa tggtcgcgct cggctgtaaa tatctgcgta
    27481 tttgccacct gaacaactgc gcaacgggtg tggcaactca ggatgacaaa ctgcgtaaga
    27541 atcactatca cggcctgccg ttcaaggtga cgaattactt tgagtttatc gcccgtgaaa
    27601 cccgcgagct gatggcacag ctgggggtaa cgcggctggt ggatctgatt ggtcgcaccg
    27661 acctgctgaa agagctggac ggtttcaccg ccaaacagca gaaactggcg ctgtcgaagc
    27721 tgctggagac cgccgaaccg catccaggta aggcactcta ctgcaccgaa aacaacccgc
    27781 cgtttgataa cggcctgctg aacgcgcagt tgctgcaaca ggcgaaaccg tttgtcgatg
    27841 aacgccagag caaaaccttc tggttcgata tccgcaatac cgatcgctcc gtgggcgcgt
    27901 cgctttcagg ctatatcgcc cagacgcacg gcgatcaggg gctggcagcc gatcctatca
    27961 aagcgtactt caacggcacc gcaggccaga gtttcggtgt atggaacgcg ggcggcgtgg
    28021 aactgtacct gaccggggat gccaacgact atgtcggtaa aggcatggcg ggcggcttaa
    28081 tcgccattcg tcctccggtt ggttccgcct tccgcagcca tgaagcaagt attatcggca
    28141 acacctgcct gtatggcgcg accggtggtc gtctgtatgc cgcaggccgc gcgggtgaac
    28201 gtttcggcgt gcggaactcc ggtgctatca ccgtggtaga aggcattggc gacaacggct
    28261 gtgaatatat gacgggcggt attgtctgta ttctgggtaa aaccggcgtt aacttcggtg
    28321 cgggcatgac cggcggcttc gcttacgttc tcgatgaaag cggtgatttc cgcaaacgcg
    28381 ttaacccgga actggtcgag gtcttaaacg ttgacgatct ggcgatccat gaagagcatc
    28441 tgcgcggtct tatcaccgag catgttcagc atactggctc tcagcgcggt gaagagattc
    28501 tggcgaactg gtcaaccttc gccactaaat ttgcgctggt taaaccgaag tccagtgatg
    28561 taaaagcact gctgggtcac cgtagtcgta gcgcagcaga gttgcgcgtg caggcgcagt
    28621 aaggggtagc aacaatgagt cagaatgttt atcaatttat cgacctgcag cgcgttgatc
    28681 cgcctaagaa accgctgaag atccgcaaaa ttgagtttgt tgaaatttac gagcagtttt
    28741 ccgaaggcca ggccaaagcg caggctgacc gctgcctgtc gtgcggcaac ccatactgcg
    28801 agtggaaatg tccggtacac aactacatcc cgaactggct gaagctcgcc aacgaggggc
    28861 gtatttttga agcggcggaa ctgtcgcacc agaccaacac cctgccggaa gtttgcggac
    28921 gagtctgccc gcaagaccgt ctgtgcgaag gttcctgcac tctgaacgat gagtttggcg
    28981 cggtgaccat cggcaacatt gagcgttata tcaatgataa agcgttcgaa atgggctggc
    29041 gtccggatat gtccggcgtg aagcaaaccg gtaaaaaagt ggcgattatc ggcgcaggcc
    29101 cggcaggtct ggcgtgtgcg gatgtcctga cgcgtaacgg cgtaaaagcc gttgtcttcg
    29161 accgtcatcc agaaattggc gggctgctga ccttcggtat tccggccttc aagctggaaa
    29221 aagaggtaat gacgcgtcgc cgtgaaatct tcaccggcat gggtattgaa ttcaaactca
    29281 ataccgaagt gggccgcgac gtgcagctgg acgatctgct gagtgattac gatgccgtct
    29341 tccttggcgt cgggacttat cagtcaatgc gcggcggtct ggaaaacaaa gacgccgatg
    29401 gcgtgtacgc agcgctgccg ttccttatcg ccaacaccaa acagttaatg ggctttggtg
    29461 aaacccgcga cgaaccgttc gtcagcatgg aaggcaaacg cgtggtggtc cttggcggtg
    29521 gcgacactgc gatggactgc gtgcgtacgt ccgtgcgcca gggagcgaag cacgttacct
    29581 gtgcctatcg tcgtgatgaa gagaacatgc cgggttcccg ccgcgaagtg aaaaacgcgc
    29641 gggaagaagg cgtagagttc aaattcaacg tccagccact ggggattgaa gtgaacggta
    29701 acggcaaagt cagcggcgta aaaatggtac gtaccgaaat gggcgaaccg gatgccaaag
    29761 gccgtcgccg cgcggagatc gttgcaggtt ccgaacatat cgttccggca gatgcagtga
    29821 tcatggcgtt tggtttccgt ccacacaaca tggaatggct ggcaaaacac agcgtcgagc
    29881 tggattcaca aggccgcatc atcgccccgg aaggcagcga caacgccttc cagaccagca
    29941 acccgaaaat ctttgctggc ggcgatatcg tccgtggttc cgatctggtg gtaaccgcta
    30001 ttgccgaagg tcgtaaggcg gcagacggta ttatgaactg gctggaagtt taagctctgt
    30061 cccagcgccg cctcctcaga aaagagtcgg cgctgaaatt ctcctttctt tctggaaagc
    30121 gcctcgcata atctgaagaa aaccaatgta atacgctcat ctggattgtt accggtagat
    30181 gcccggcgta tagctgattc cattattcaa cgcagcgcca tataaaggga cagataatgg
    30241 aatcgctctc agagagaacc tcaacaggct accagcaaat ccacgacggt attattcacc
    30301 tggtcgatag cgcccggacg gaaacggtac gtagcgttaa cgcgctgatg accgcgacat
    30361 actgggaaat tggccgacga attgtcgaat ttgaacaagg tggcgaggca agggctgcgt
    30421 atggtgcgca gctaatcaag cgactatcaa aggatttaag tctaaggtat aagcgtgggt
    30481 tctctgcaaa aaacttacgc caaatgaggc ttttttacct cttttttcaa catgttgaaa
    30541 ttcgccagac agtgtctggc gaattaacac cattgggaat tccgcagaca ccatctgcag
    30601 aattcccatc ggcaaagatt tggcagacgc tgtctgccaa attgagaggc tgtttgatat
    30661 ttccacagct tttgtattgc atctcctatt ttcggtttgt atattcatgc aaataaacga
    30721 aggaaagttg ccatgattta cattgaacag cttgaattaa tccataaaag tggtgatgtg
    30781 ttgtatccag taaaaataac cagaaaatca tcaggaaaaa ctgccttcca tcttgttcca
    30841 ttcggcttaa ataagactca cgaccttcta gaggtggaag atgcttcaga agcaattcgg
    30901 ctggtgattg atgaacgtca ttccattcgc tgcagtacac ttacagcaac tattacgaat
    30961 aaaaagggca agcgaattaa gcggacaggt atatacagta tcaagggtgt taacataaaa
    31021 gaatacaacg tcaggtaatg gcacagagcg gtccgtcagt tcaggtttgg ctctgtgcca
    31081 aagatgggtc aggtcacacc tgatctaata aatttaagcc attaaatcag ccttaacctt
    31141 caccaccacc tttttaatct cacccggctc gccgacaacg catcctggtt tatgcggttc
    31201 acttggcata aacacggcga acattcccgg ttttaagatg atggcttgct cgttatcaat
    31261 ggtgctgcaa agctgataat catcctcatg gtggaactct tcacactggc gcgcagtgcc
    31321 tgccatgcca aacagaatcc gttcctcacc gtttaataac agctggatat caatgtattg
    31381 ctcgtgcaat tccgcttttt tctcgacggg cgattgagtg ttaaacgtca tgacattcat
    31441 aaagatattg tcgccctgta attcgtaacg accaggcgct ttttcttgcg gtctggcagc
    31501 taatgccagc gttaacgcgt cctgtaacgc aggatgtaac ccagcagacg gtaatgactg
    31561 tacttcaccc atcatcataa tttttctccc tgggccaaca gcgcagcccc aagtaaacct
    31621 gcatcgtggc ggtagtgcgc cgccagtaaa tcaacatgaa atgccgctgg ctcctgcgcc
    31681 agatacgttt ccaccaacgc cagataccct tctgccagac caacgctgcc accgaccacc
    31741 acgcactggc aatcagttgt ggctttaata tcagcgatca gccttgccag cacatgtgcg
    31801 gagcggtgaa tcagttgctg cgcctgctcg tcgccctgcc cggcgcgtgt gaaaatagtt
    31861 ctcgcatccg cgcccatgag ttcaccttgc gctgccgctg caataccgcg accagaagca
    31921 atcgcttcca cgcaacctgt gcgtccacag ccgcagactg ggccgtgtgg atcggcaagc
    31981 gtatgcccga tgtgccccgc cagaccgcta gggccggtaa gcagtttacc gccgctcact
    32041 acaccgccgc cgacgccagt ggaaacggtg ataaacacca tatcggttat atcgccttcc
    32101 agcgcctgat actctgccca tgctgcggcc tgcgcgtcgt taatggcaat ggtcggcaaa
    32161 ttggaaagtt gttccagcgt tttgactaac ggaaagtgta gcaatccacc aagattatgc
    32221 ggattcagcg ccagcaagct gccgtcgcga ataattccgg ttgaagcgat ggcaacctgc
    32281 tgcgcatgag cttgcaacgg ggcgactaac gcggctaagg catcacgcaa cgcctgcgga
    32341 gtctggctgg ctggtgtcgg aagttctcgg cgatcgcgga tctgcccgtc agcgccaatc
    32401 agcgcggcgg caagtttagt accgccgata tcaatcgcca acgtggtcat agcaccgcct
    32461 ttttcatcgc tgtgttgtac cactgacaaa tgtgttcaag acgcgtaatg gcagaaccga
    32521 ccgtcaccgc ccacgcgccg tggcgcatcg catctgccgc ctgagcaggc gtgttgtaac
    32581 gcccttcggc aatcacccga catccggcgt cgctcaacgt tttcaccagc gccagatccg
    32641 gctcttctgg cgtttcaggc gtggtatagc cagaaagcgt agtgccaata atttcggctc
    32701 ccagcttttg gcatgccagg ccgtcttccg gcgttgagca gtcggtcatc gccagtaaac
    32761 cgtgatggtg aatacgtgcc agcagcgttt caacaggcac cggacgcggg cggtcggtgc
    32821 cgtcaatggc gataatgtcc gcgcccgcct gcgccagcgc atcaacatct tcaatatagg
    32881 ccgtgatgcg taccggagaa tcctccagat cgcgtttcac aattccaata atcggcacgc
    32941 tcaccaccgc acgcgtggct tgcagatttg ccacaccttc aatgcgaatg gcaaccgcgc
    33001 ccgcctgttc tgccgctaat gccatggcag cgacgatttc gggtttatcg agcgggctgt
    33061 ccggaaccgg ctggcaggag acaatcaggc caccgttagc agcgattttt tgatccagtt
    33121 gtgcaagtaa cgacatacat cttcccttag cgaaaggccc ggtacagaga ccgggcaaca
    33181 ggattaactt ttggttttga ctaaatcgtt tttggtgctg ccaaatggca cggcaccgct
    33241 aaatggtttg ccgtcgatag cgtcatgagt acgcaatgct tccgggcgca gccaacgctg
    33301 aacgcgggaa ggcatatcca gaccaatcag caggatcacc acaaatgtca gactgaacga
    33361 tagcgatgcc agcgcagtac ccagatccag acgttgagcg atcaacgcgc cgatgattgg
    33421 ggccagtgcg ccgcccaatg cgccaacgtt gtaggtaaag cccaggcccg ctgcacgctg
    33481 gtcggtatcg aaataaccgc caatcagttt cggtaagatc ccggcgatcc cttgtccaag
    33541 catttgctgg aagaacagta acagaccgag cacccagacg tttgcgccgc caatcgcaaa
    33601 taccggaata atcaacagct gcgaggccaa caggctacaa acgtaggctt tgcgggttcc
    33661 cagccagtca ccgaggaagc cgctgacaca gcaccccacc gcagccccaa agccgctaaa
    33721 gaacagcaca ttggcgacag tatgcgggtt ataagccaga tcggttttca gatacgttgg
    33781 cagcagcgcc tgaatcggcc atgagtagag gaaagcaaac aacacgacca ccatcagcat
    33841 tacgcccgtt ggccagcgtt tacccgtact ttgcaccata aagctgataa agattgcggc
    33901 gcataacagc ccaagaacag cgacgatcgc ggcattttgc aggttaccgg cgaagcaaaa
    33961 ccacagcgca gtagccgccg ccagtgtcat tacgatattg gcaatgcgat gttcaccacg
    34021 gtagagaata tctaccatcg tgcgtactgg tgctttacct gcatgcttct ctttccagtc
    34081 ttccgcttcc gggatgtttt tacgcagcca gagagcaaag atgataggca aaatgccgat
    34141 aaagaacagc gcacgccagc cccagaccgg aaccaccagg ctatagacct gagcggcaac
    34201 gacggccccc acagagaagc ctgaaatcag aaaaccactg gctttgttac gcagatgttt
    34261 tggccagctt tcaatgacat aggtggcgct ggaaccgtat tcacccgcca tccccatgcc
    34321 gatgaccaga cgcgcgataa acatggtgat gtagcctggc gcaaagccgc aggccagcgt
    34381 cccggccgag aagagaacga tgctggtgac cattgccaga cgacgcccgt agcggtcacc
    34441 catagcgccg agcatcaggc cgccgaacca gcgagagata aaggctgcgg agatcagact
    34501 tgccgcctgc accgtcgtca gcccgaattc accctgtact tcggtgagta ccagggcgat
    34561 taaaacgaaa tcaaaaccgt caagcagata tcccaaccag gcagcggaaa atgcgcgcca
    34621 ttgtgcacgg ttgagatggc gataccacgg gatattctgg gttgtagtac tcattgtgag
    34681 tctcccgcgg tgggcgatgc ccacacgctt tggtataaaa attgtagggt acagatgcgt
    34741 ttatttcccc tcacccggta ggggcgagcg aggggaaaca actcacccgc gctcttgcat
    34801 caactgctgg gccagcgcct tcagttctgg cagatatttt tcatctaccg gtccaaacgg
    34861 tttgcggcac agcggcacag aaacgacatc catataatgg aggacagttt tcaggccgcg
    34921 gaatacgccc gttttgatca gtaaatcaat gactttattg cattcagttt gcagtttctg
    34981 cgcggtctgg atatcgcctt ctttcagcgc cttaacgatc ccctgatagc gccagcccat
    35041 gatgttgtag gtactaccga taccaccatc agcgcccgcc agcagaccag aggcgaagat
    35101 ttcgtcgtaa ccgttataga gcacaagatc aggatgttca cgacggatct gctccatctg
    35161 atagagatcg ccagaggtct gtttcagcgc acctacgcca ggcaatgtaa caagtgtgtt
    35221 gatctgatcc agggtcagtt ttaccccact cagggctgga atgttgtaca ccaccatcgg
    35281 caaaccatcc gccgaatcaa taattgcccg atagtgatcg cagtgttctt caaagctgaa
    35341 aggatagtag aacggcgtga cggcggagac ggcatcgaag ccataacgtt tagccgatgc
    35401 cgcaagttgt tggctttcgg cggtgctgac gcaaccgacg tgggcgatga gtttaatctt
    35461 acctttcgcc tcttcggcga cgatttccag tacctgttca cgctcggaaa ggctttgtac
    35521 aaaggcctcg ccggtcgaac cacccacgta taaaccgtcg atgccctgct gaatattgaa
    35581 ctgaaccagg cgacgcagac tcgctttatc cagtgcttgt tgttggtcaa aaggagtcag
    35641 gagtgcagcc attacgccac gtaaattcgt tgccataaat acctctgaag tgatgcttgt
    35701 ctgataaacg atataccttt atacctgtta taccagatca attaagcaac accccataca
    35761 gaaagcttat aatgcgatct gcttcactaa agtggcatta tttctttttg ttggtggtct
    35821 gaccgaaagc gtgccaggta gcagagacgc tgttgagatg cgattgcaac gcacgatcgg
    35881 cttcgtcagg atcatgacgg cggatcgcat caacgatcgc aatatgctgt tgataactaa
    35941 cgttgttatg ttcgtgcagt gcctgatcgg taaccgttgg gcgtgcggca ataagccagt
    36001 cgagcagggc aacgtggatc gccatgaaga ttgggttacc ggggatctcc gccagcacgc
    36061 ggtggaaatc aacgtctgaa cgaatgaatg ccgcgttgtt atccagcgac tgactgttga
    36121 tttccagtgc ttttgccagc aaatcgattt gctcatcggt ggcatgttca gccgcatagc
    36181 gcaccagact ggattcaaag aacagacgta attgttcgaa atgggcaatc ccaccgggat
    36241 gagaaaggaa atctttcgcc atgccggaaa gctcaccgat gatagtgtcc gcagaaggac
    36301 gcgagacgcg agcgcgttcg ccgttgttta tttgcaccag acctttgcgt tttaacgctg
    36361 ccagcgcttc acgcaccgaa ggacgcccga cgttaaagaa cgccatcagt tcgcgttcag
    36421 acggtaattg ttcaccttcg ccaaattcac gacggcggat catctgttcc agctcttctt
    36481 ccaccatttc ggagagtttt ttacgcgcca gcgggcggct acgcaagttg cgaccaattg
    36541 caggtgaaga atcttcggtt tgcgaatcaa atgcgttcat aaggcccatt ctgtaaggtc
    36601 agtgtgatta acatcatcag tgacatccta tcacaggatt gaaagtaggg gaaaatggca
    36661 ggtttttctc tttgtgcctc atcattacca taattaacgg aataattaac tattgcgaaa
    36721 aattaatgta acgcagataa aaacatcccg tttgaattat ttataagact attcacgagc
    36781 attatgaata ttatgaatgc gttcttgcaa aataatcata agcgcatatt ttttaatgaa
    36841 aaattatctc acctacaatt aaaaacacga catccgcacc ataaatagac ttgcaaaaaa
    36901 tataacatca ttgttttcaa tctgccgttt atgggattga ccgttttctt ttgacacgga
    36961 gttcaacaat gttcggcata attatatctg tcatcgtatt aattacgatg ggctatttga
    37021 tcctgaaaaa ctacaaacct caggtggtgc tggctgccgc aggtatcttc ctgatgatgt
    37081 gcggtgtctg gttagggttc ggtggtgtac tcgagcccgc caaaagcagc ggctacttga
    37141 tcgtcgatat ttataatgaa atcctgcgca tgctgtccaa ccgcattgcc ggattggggc
    37201 tatcgattat ggcggtgggc ggtatgcccg ctacatggag cgcatagggg ccagtcgcgc
    37261 gatggtgagc ttgttaagcc gcccgttaaa actcattcgc tcaccgtata ttattctgtc
    37321 ggcaacttac gtcatcggtc aaatcatggc gcagtttatt accagcgcct ccggtctggg
    37381 tatgttgctg atggtcacct tatttccgac actggtgagt ctgggagtaa gtcgtctctc
    37441 tgcggtggcg gttatcgcaa ccacaatgtc cattgagtgg ggaattctgg aaacgaactc
    37501 catttttgca gcccaggtcg cgggaatgaa aattgccact tacttcttcc actaccagct
    37561 tccggtcgcc tcttgcgtca ttatctcggt ggcgatctcc cactttttcg tgcaacgcgc
    37621 ttttgacaaa aaagataaaa atatcaatca cgaacaagca gagcaaaaag ctctcgataa
    37681 tgtcccgccg ctctattacg ccattttacc tgtgatgccg ttaatcctga tgctcggctc
    37741 gctgttcctc gcccacgtcg ggctgatgca gtcagaactg catctggtgg tggtgatgtt
    37801 actgagtttg acggtgacga tgtttgttga gttcttccgc aagcataact tgcgcgaaac
    37861 aatggacgat gtgcaggcgt tttttgacgg catgggtacg cagtttgcca acgtggtaac
    37921 gctggtggtc gcgggtgaaa tatttgcgaa aggcttaacg acgattggca ctgtcgatgc
    37981 ggttatcagg ggtgcggagc attctggtct gggcggtatt ggcgtgatga ttattatggc
    38041 gctggtcatt gccatttgtg ccattgtgat gggctctggc aatgcgccgt ttatgtcatt
    38101 tgccagtctt attccgaata tcgcagctgg actacatgta ccagcggttg taatgattat
    38161 gccgatgcat tttgccacga cgctagcgcg cgcggtttcg ccgattactg cggtggtggt
    38221 cgttacgtca ggaattgcag gcgtttcgcc ttttgcggtg gtgaagcgaa cagcgatccc
    38281 catggcagtc ggtttcgtgg tgaatatgat tgccacaatc aagctatttt attaagccat
    38341 taaaagacaa aacaggccac cagggcctgt ttttgtatta cttcacaacg cgtaatgccg
    38401 gtcgaccacc gcgtggtggc tgcggaggtt catcgtcagg atgagtgtca tcatcgtgat
    38461 ctggcttgtc gccatcaata accgacataa cggtttcgtt gtctgccgat gcctcttcat
    38521 cattcatgat gctggtatct tcatcgtagg cagcttcagg ctcaaacatt gtgcctgcgc
    38581 cattttcacg ggcgtagata gccagcacgg cagccagcgg cacagaaacc tgacgcggaa
    38641 tgccgccaaa gcgcgcgtta aagcgcacct catcattcgc cagttccaga ttgccgacag
    38701 cacgcggcgc aatgttgagt acgatttgcc cgtcacgcgc atattccata ggaacctgca
    38761 cgccagggag cgtcacatcc accaccaggt gcggcgtgag ctggttatcc agcaaccact
    38821 catagaatgc acgcagcaga tagggacgac gtggtgttag ctgtgacaaa tccatacaga
    38881 ttaactccgg cccagacgca tttcacgttc tgcttcagtt aaagaagcaa ggaaagagtc
    38941 acgctcaaag acgcgggtca tatagccttt cagctctttc gcacccgggc cgctgaactc
    39001 gatgcccagt tgcggcagac gccacagcag cggagcaaga tagcaatcga ccaggctgaa
    39061 ctcatcgctc aggaagtacg gcttctgacc gaagaccggc gcaatcgcca gcagttcttc
    39121 gcgcagttgc ttacgtgcgg catctgcttc agaagctgaa ccgttgatga tggtgttcat
    39181 cagcgtgtac cagtcttttt cgatgcgatg catgtacaga cggctttcac cgcgagctac
    39241 cgggtaaaca ggcatcagtg gcggatgcgg gaaacgctca tccagatatt ccataatgat
    39301 gcgagattcc cacagggtca gctcacgatc caccagggtc ggaacgctct gattcgggtt
    39361 gaggtcaatc agatcctgag gcggattgtc cttttccacg tgttcgatct cgaaacttac
    39421 acctttctca gccagcacaa tgcggacctg atggctatag atgtcagtag gaccggaaaa
    39481 cagcgtcatt accgaacgtt tgttggcagc gacagccatg aaaacctcca ggtatagtca
    39541 gaatttttac tgctaccagc caccaggtgg ccagtcagaa gttgtgttac ccagtaagga
    39601 acgactctct ttgttcgaaa atcaaacaaa aaatgagcaa tacccgacat ttgggcagaa
    39661 aattggatga tagtttacca gattttgcga cctttgtggt gagtcgatgc cggaaatggg
    39721 gaaaaagaga tgcgctttag tctgaaatag ttgacttagt cccttattgg cgatgtggtt
    39781 tttgttttac ctgtctgtca ggtggcagca aaaagcaact ttccagtttt tacgctgatt
    39841 cagattttag ctataaaaaa acccgccgaa gcgggttttt tcgaaaattg ttttctgccg
    39901 gagcagaagc caattaacgt ttggagaact gcggacgacg acgtgcttta cgcagaccga
    39961 ctttcttacg ttcaacctga cgagcgtcac gagtaacgaa gccagcttta cgcagttcag
    40021 aacgcaggga ctcgtcgtat tccatcagag cgcgggtgat accgtgacgg atcgcaccag
    40081 cctgaccaga gataccacca cctttaacgg tgatgtacag gtccagtttc tcaaccatgt
    40141 cgaccagttc cagcggctga cgaactacca tgcgggcagt ttcacgaccg aagtactgtt
    40201 ccagagaacg ttggttgatt acgattttac cgttgcccgg tttgatgaaa acgcgagctg
    40261 cggaactttt gcggcgacca gtgccgtagt attgattttc agccattgcc tataatcccg
    40321 attagatgtc aagaacttgc ggttgctgtg ccgcgtggtt gtgctcgtta cccgcgtaaa
    40381 ctttcagttt acggaacata gcacgaccca gcgggccttt tggcaacatg cctttaaccg
    40441 cgatttcaat cacacgctca ggacggcgag caatcatctc ttcaaaggtc gcttgtttga
    40501 taccaccgat gtggccggtg tggtgatagt acactttgtc agtacacttg ttgccggtta
    40561 cagcaacttt gtcagcgttc agaacgatga tgtaatcacc ggtatctacg tgcggagtgt
    40621 attccgcttt gtgcttaccg cgcaggcgac gagccagttc agtagccaga cggcccagag
    40681 ttttaccggt cgcgtcaaca acataccagt cgcgttttac ggtttctggt ttagctgtaa
    40741 aagttttcat taaaagctta cccaataaat agttacacgt tggtgaacac ccaaacgtct
    40801 tcaattgttg aggttcacac gacaaagtcc ggcaaaccta ccccttcgaa tagcctatgc
    40861 cagcacacaa aaagttttgg gaaaaaactt tcttgtaacg tggggtcgca ggattataga
    40921 gaagtcgggg tcaaagatcg accccttttt gtgatttgtg acaggtttta acccgccaaa
    40981 tgctcgcgct tcagatactc ttcgctttgc atctcttgca gacgtgacag gcaacgctgg
    41041 aactcaaact tcagccgatc gccctgataa atttcataca gcggcacttc tgcactcacc
    41101 actaatttga catggcgctc gtaaaactca tccaccagcg caataaagcg ccgcgcttcg
    41161 ctctccatca accgcgtcat aactggtaca tcaaacaaca tgaccgtatg aaagaggcgt
    41221 gagagcgcaa tatagtcatg ctggctgcgg gcatcgacac acaaggtggt aaaagagaca
    41281 gcaagcgtct gattctcagc gcccattgtc gccagcggtc gatggttgat ttctaacgtc
    41341 ggtgaatttt cgcgtttcgc tcccgccagc gccaaccata gtttatccat ttgtgcccgg
    41401 gtttcatcgt ggagtggcga aagccacaga tgcgcctgag tgagtgtacg cagtcgataa
    41461 tcaacaccag cgtccacgtt cattacatca caatgctgtt taatggcatc gattgcaggc
    41521 agaaaacgcg cacgttgcaa gccatttcga taaagttcgt ccggcggaat atttgacgtt
    41581 gctaccaggg taataccgcg ggcgaacagg gctttcatca gaccgccaag tagcatggcg
    41641 tcggtaatat cagaaacaaa aaattcgtca aaacagagca cgtcagtttc ggctttaaag
    41701 cgatcggcaa taatttccag cggatcggtc tgcccctgta aggcagttag ctcttcgtgc
    41761 acccgcagca taaaacggtg aaagtgcagg cgctgtttcc gctctcccgg caggctttga
    41821 tagaaaaggt ccatcagcca ggttttcccg cgtcctacac cgccccacat atataagcca
    41881 cgcactggcg tatgctttgt gtcttcgcgt ttaccccaca gcttaccgac ccgcgccatt
    41941 agcccactcg tcctgggggc tggtggcctg ctattgatga gttcttgata aataatttcc
    42001 aggcggctga cggcctcttt ttgaacgtcg tcgggttgat ggctgccttc attgagcgcc
    42061 ttcaggtatt gcgatgttgg ggtaacgctt tgcatgatct tattattatt ccttgaataa
    42121 tcggtgcgcc gttgttcacg gttgacgaaa aaaaggccgt tctacactac gcgatatgca
    42181 gtcgggattc cacttctgtg gaattaacgg ttatagtggc ataatcagcc gtaggcatgg
    42241 agcctgaagc caacacccta cggaaacaaa agacaacggg agatgttcat gacctgggaa
    42301 tatgcgctaa ttgggttagt cgtcggcatc attattggtg ctgtggccat gcgttttggt
    42361 aatcgtaaac tacgccagca acaggcgttg cagtacgaac tggaaaagaa taaagctgaa
    42421 ctggacgagt atcgcgaaga gctggttagc cactttgccc gcagcgcgga attactggat
    42481 accatggcgc acgactatcg ccagctgtat cagcacatgg cgaaaagctc cagcagcctg
    42541 ctgccggaac tgtctgctga agcaaacccg ttccgtaatc gtctggcaga gtctgaagcc
    42601 agcaacgatc aggcaccggt gcagatgcct cgcgactatt ctgaaggtgc atccggcctg
    42661 ctgcgtactg gcgcgaagcg cgactaattt atttttcggg cgcagccatt gcgccctcct
    42721 cttctctccc tccccgacta tcatttaatc tggtgtctca ttgttagccg tctgaaaatt
    42781 caataacatc aaactgtttt gaatctcttt tcttatcatt caggtacgag agcaggaata
    42841 atgaaaaaac aaacccagct gttgagtgca ttagcgttaa gtgtcgggtt aactctctcg
    42901 gcgtcatttc aggccgtcgc gtcgattcca ggccaggttg ccgatcaggc ccctctcccc
    42961 agtctggctc caatgctgga aaaagtgctt ccggcagtgg tgagcgtacg ggtggaagga
    43021 acggccagtc agggacagaa aatcccggaa gaattcaaaa agttttttgg tgatgattta
    43081 ccggatcaac ctgcacaacc cttcgaaggt ttaggttccg gtgtcatcat caacgccagt
    43141 aaaggctatg tgctgaccaa caaccatgtg attaatcagg cacagaaaat cagtattcag
    43201 ctcaatgatg ggcgcgagtt tgatgcaaaa ctgattggta gcgatgacca gagcgatatc
    43261 gccctgttac aaattcaaaa cccgagcaaa ttaacgcaaa tcgctattgc cgactccgat
    43321 aaattgcgcg tcggtgattt tgccgtagcg gtcggtaacc catttggcct tgggcaaacc
    43381 gccacctctg gcattgtttc cgcattaggc cgcagcgggt tgaatcttga aggtctggaa
    43441 aactttatcc agacagatgc ttccattaac cgcggtaact ccggcggtgc actattaaac
    43501 cttaacggtg agttaattgg catcaacact gcaatccttg cgcctggcgg cgggagcgtc
    43561 gggattggat ttgccatccc cagtaatatg gcgcgaacac tggcgcagca gcttatcgac
    43621 tttggtgaaa tcaaacgcgg tttgttaggc atcaaaggca ccgagatgag tgccgatatc
    43681 gccaaagcct tcaaccttga cgtgcagcgt ggcgcgtttg tcagcgaagt gttgccaggt
    43741 tctggctcgg caaaagcggg cgtcaaagcg ggcgatatta ttaccagcct caacggcaaa
    43801 ccgctgaata gctttgctga gttgcgctct cgtatcgcga ctacagagcc gggcacgaaa
    43861 gtgaagcttg gcctgctgcg taacggcaaa ccactggaag tagaagtgac gcttgatacc
    43921 agcacctctt cgtcggccag cgctgaaatg atcacgccag cgctggaagg tgcaacgttg
    43981 agcgatggtc agctaaaaga ttgcggcaaa ggtattaaga tcgatgaagt tgtcaaagga
    44041 agcccagctg ctcaggcagg cttgcaaaaa gacgatgtga tcattggcgt caaccgcgat
    44101 cgggtgaact cgattgctga aatgcgtaaa gtgctggcgg caaaaccggc catcatcgcc
    44161 ctgcaaattg tacgcggcaa tgaaagcatc tatctgctga tgcgttaatg tcgtaaaccg
    44221 ggcatcaggc ttacgtgtga tgtccggtta actcgtggta tgctgctgcc gttccctttt
    44281 ttaatgacgc ctccatcatg tttgtgaagc tcttacgttc cgttgcgatt ggattaattg
    44341 tcggcgctat tctgctggtt gccatgcctt cgctgcgcag ccttaacccg ctttccactc
    44401 cgcaatttga cagtaccgat gagacgcctg ccagctataa tctggcggtt cgccgcgccg
    44461 cgccagcggt ggttaacgtt tacaaccgtg gtgtgaacac caactctcac aaccagcttg
    44521 agatccgcac cctgggatcc ggtgtaatca tggatcaacg cggttatatc atcaccaata
    44581 aacacgtcat caacgacgcc gatcagatca tcgtcgcctt acaggatgga cgtgtatttg
    44641 aagcattgct ggtgggatct gactctctaa ccgatctggc ggtacttaaa attaatgcca
    44701 ctggcggttt acctaccatt ccaattaatg cacgtcgcgt accgcacatt ggcgacgtag
    44761 tactggcgat cggtaacccg tacaacctcg ggcagaccat tacccaaggg attattagtg
    44821 ccacggggcg aatcggtctg aaccctaccg ggcggcaaaa cttcctacaa accgatgctt
    44881 ccattaacca cggtaactct ggcggcgcgc tggtgaactc gctgggagaa ctgatgggca
    44941 ttaacacgct gtcgtttgat aagagtaacg atggcgaaac gccggaaggt atcggctttg
    45001 cgattccttt ccagttagca accaaaatta tggataagct gatccgcgat gggcgcgtga
    45061 tccgcggcta cattggcatt ggtggacgtg agatcgcacc actgcacgcg cagagcggtg
    45121 gtatagatca actgcaaggg atcgtggtta atgaagtgtc acctgacggc ccggcggcga
    45181 atgcgggtat tcaggtcaac gatctgatta tttcggtgga taacaaaccg gccatctctg
    45241 ctctggagac gatggatcag gtggcagaaa ttcgccctgg ttcggtgatc ccggttgtag
    45301 tgatgcgtga tgataagcag ttaacgctgc aggtcaccat tcaggaatat ccggcaacca
    45361 attaagtcga gtgctcaaaa caaaaaaccg gagtctgtgc
//
LOCUS       DAJVUP010000009        44217 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.009, whole genome shotgun sequence.
ACCESSION   DAJVUP010000009 DAJVUP010000000
VERSION     DAJVUP010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 44217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 44217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..44217
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.009"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            85..627
                     /gene="lpfE"
                     /locus_tag="OQQ75_000539"
     CDS             85..627
                     /gene="lpfE"
                     /locus_tag="OQQ75_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000831423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbrial protein LpfE"
                     /protein_id="HCS1974982.1"
                     /translation="MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELV
                     KDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFA
                     LDAGGATGVGLKIKTAAGVQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATI
                     GRADATVDFTVQYSTNNFTS"
     gene            867..2558
                     /gene="eptB"
                     /locus_tag="OQQ75_000540"
     CDS             867..2558
                     /gene="eptB"
                     /locus_tag="OQQ75_000540"
                     /EC_number="2.7.8.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418002.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid A phosphoethanolamine
                     7''-transferase"
                     /protein_id="HCS1974983.1"
                     /translation="MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWK
                     GVSAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYG
                     IIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRS
                     LAVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAW
                     ARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKL
                     AQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDL
                     YAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLI
                     ILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFISSVID
                     QVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMSDKYLENPANAQ
                     AFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIPQAKEAAAN"
     gene            2650..2726
                     /locus_tag="OQQ75_000541"
     tRNA            2650..2726
                     /locus_tag="OQQ75_000541"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2684..2686,aa:Pro,seq:cgg)
     gene            3470..5077
                     /gene="dppA"
                     /locus_tag="OQQ75_000542"
                     /pseudo
     CDS             3470..5077
                     /gene="dppA"
                     /locus_tag="OQQ75_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418001.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter substrate-binding
                     protein DppA"
     gene            5385..6404
                     /gene="dppB"
                     /locus_tag="OQQ75_000543"
     CDS             5385..6404
                     /gene="dppB"
                     /locus_tag="OQQ75_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="HCS1974984.1"
                     /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI
                     SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLEL
                     GVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW
                     NLTPASGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLA
                     VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA
                     GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR
                     IRHKK"
     gene            6414..7316
                     /gene="dppC"
                     /locus_tag="OQQ75_000544"
     CDS             6414..7316
                     /gene="dppC"
                     /locus_tag="OQQ75_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="HCS1974985.1"
                     /translation="MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLF
                     IAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDMLSRLMYGARLSL
                     LVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS
                     IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAP
                     LIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI
                     LLTVLAFNLMGDGLRDALDPKLKQ"
     gene            7327..8310
                     /gene="dppD"
                     /locus_tag="OQQ75_000545"
     CDS             7327..8310
                     /gene="dppD"
                     /locus_tag="OQQ75_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HCS1974986.1"
                     /translation="MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS
                     GKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSL
                     NPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA
                     EAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPG
                     KYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL"
     gene            8307..9311
                     /gene="dppF"
                     /locus_tag="OQQ75_000546"
     CDS             8307..9311
                     /gene="dppF"
                     /locus_tag="OQQ75_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP binding subunit
                     DppF"
                     /protein_id="HCS1974987.1"
                     /translation="MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFN
                     LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLRRQKIQ
                     IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH
                     MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFI
                     SHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRER
                     IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR
                     "
     gene            complement(9341..10612)
                     /locus_tag="OQQ75_000547"
     CDS             complement(9341..10612)
                     /locus_tag="OQQ75_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1974988.1"
                     /translation="MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGL
                     KGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYF
                     LMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLF
                     KISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQ
                     VLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAF
                     EQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRII
                     DTKKINSRMLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKV
                     AQLEKLRGFKAWLILLYGILLCLSPLLKLIE"
     gene            11088..11195
                     /locus_tag="OQQ75_000548"
     CDS             11088..11195
                     /locus_tag="OQQ75_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1974989.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
     gene            complement(11282..12961)
                     /gene="bcsG"
                     /locus_tag="OQQ75_000549"
     CDS             complement(11282..12961)
                     /gene="bcsG"
                     /locus_tag="OQQ75_000549"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HCS1974990.1"
                     /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP
                     LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFS
                     TDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFS
                     LWPAGQPTTTVTTTGGNAAATVETTGGAPVVGDMPAQTTPPTTANLNAWLNNFYNAEA
                     KRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATS
                     YSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLK
                     EVRENGGMQTELMDQTNLPVILLGFDGSPVYDDTTVLNRWLDVTEKDKNSRSATFYNT
                     LPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD
                     RMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGK
                     IFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ"
     gene            complement(12958..13149)
                     /gene="bcsF"
                     /locus_tag="OQQ75_000550"
     CDS             complement(12958..13149)
                     /gene="bcsF"
                     /locus_tag="OQQ75_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsF"
                     /protein_id="HCS1974991.1"
                     /translation="MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR
                     YVKPAGTLRRTEKARATKK"
     gene            complement(13146..14717)
                     /gene="bcsE"
                     /locus_tag="OQQ75_000551"
     CDS             complement(13146..14717)
                     /gene="bcsE"
                     /locus_tag="OQQ75_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsE"
                     /protein_id="HCS1974992.1"
                     /translation="MRDIVGPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLAN
                     QTIASQAETAHVAVISMDSDPAKIFQLDDYQGPEKIKLFSMLNHEKGLYYLTRDLQCS
                     IDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLTHCSLLVINPGNNNDKQFSL
                     LLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAE
                     IQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQI
                     EPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTM
                     IESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGV
                     LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLP
                     TGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRI
                     PEPMRLLDDAVERSS"
     gene            14990..15178
                     /locus_tag="OQQ75_000552"
     CDS             14990..15178
                     /locus_tag="OQQ75_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjR family protein"
                     /protein_id="HCS1974993.1"
                     /translation="MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQ
                     LAAALKRWPLLAEFAQQK"
     gene            15190..15942
                     /gene="bcsQ"
                     /locus_tag="OQQ75_000553"
     CDS             15190..15942
                     /gene="bcsQ"
                     /locus_tag="OQQ75_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HCS1974994.1"
                     /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL
                     RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHRQTRL
                     SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQ
                     ALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAIAECLAAKQPVGEY
                     RSDALAAEEILTLANWCLLNYSGLKTPVGSAS"
     gene            15939..18551
                     /gene="bcsA"
                     /locus_tag="OQQ75_000554"
     CDS             15939..18551
                     /gene="bcsA"
                     /locus_tag="OQQ75_000554"
                     /EC_number="2.4.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417990.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-forming cellulose synthase catalytic
                     subunit"
                     /protein_id="HCS1974995.1"
                     /translation="MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILA
                     WIFIPLEHPRWQRIRAEHKNLYPHINASRPLDPVRYLIQTCWLLIGTSRKETPKPRRR
                     AFSGLQNIRGRYHQWMNELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLIL
                     ALICVTQPFNPLAQFIFLMLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRYTS
                     TLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVDIF
                     VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQNVGVKYIARTTH
                     EHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHFFS
                     PDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE
                     TVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLDNP
                     LTGKGLKFAQRLCYVNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLP
                     HMIHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGGLV
                     EEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYGPPTEMLTVVVSMVWVFYNLIVLGG
                     AVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQILEG
                     QKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQQHIDFVQCTFARADTWALWQ
                     DSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRVLTSLVSWVVSFILRRPER
                     SETAQPSDQALAQQ"
     gene            18562..20901
                     /gene="bcsB"
                     /locus_tag="OQQ75_000555"
     CDS             18562..20901
                     /gene="bcsB"
                     /locus_tag="OQQ75_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HCS1974996.1"
                     /translation="MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTE
                     QNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGM
                     RSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN
                     PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPV
                     PFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRN
                     AIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQ
                     GNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAI
                     NVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEAN
                     RLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQN
                     HVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMET
                     LLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQAT
                     ESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLA
                     DSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERVWYAL
                     ANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE"
     gene            20908..22014
                     /gene="bcsZ"
                     /locus_tag="OQQ75_000556"
     CDS             20908..22014
                     /gene="bcsZ"
                     /locus_tag="OQQ75_000556"
                     /EC_number="3.2.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase"
                     /protein_id="HCS1974997.1"
                     /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID
                     PSDARKITTSEGQSYGMFFALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKE
                     NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG
                     SMLLPGKVGFAEDNSWRFNPSYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFS
                     PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE
                     KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNY
                     VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH"
     gene            21996..25469
                     /gene="bcsC"
                     /locus_tag="OQQ75_000557"
                     /pseudo
     CDS             21996..25469
                     /gene="bcsC"
                     /locus_tag="OQQ75_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026226.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsC"
     gene            25551..27539
                     /gene="hmsP"
                     /locus_tag="OQQ75_000558"
     CDS             25551..27539
                     /gene="hmsP"
                     /locus_tag="OQQ75_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator HmsP"
                     /protein_id="HCS1974998.1"
                     /translation="MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTAT
                     QLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIP
                     ERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLV
                     TIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIG
                     MLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIIT
                     CETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHA
                     ITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGK
                     NQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQ
                     QPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQL
                     MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF
                     GMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVE
                     TEAQRDWLAKAGVGIAQGFLFARPLPIKIFEESYLEEK"
     gene            27722..29008
                     /gene="dctA"
                     /locus_tag="OQQ75_000559"
     CDS             27722..29008
                     /gene="dctA"
                     /locus_tag="OQQ75_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DctC"
                     /protein_id="HCS1974999.1"
                     /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL
                     IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG
                     AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF
                     GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQ
                     LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM
                     LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI
                     VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG
                     VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS"
     gene            29228..30712
                     /locus_tag="OQQ75_000560"
     CDS             29228..30712
                     /locus_tag="OQQ75_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS1975000.1"
                     /translation="MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW
                     QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ
                     QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL
                     QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM
                     TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS
                     IMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRA
                     QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA
                     DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL
                     QPKGEPEFNMKALQAAWDQIMAPSTAAVATDDVHPEVTDIPPAQ"
     gene            complement(30808..31737)
                     /gene="kdgK"
                     /locus_tag="OQQ75_000561"
     CDS             complement(30808..31737)
                     /gene="kdgK"
                     /locus_tag="OQQ75_000561"
                     /EC_number="2.7.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417983.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygluconokinase"
                     /protein_id="HCS1975001.1"
                     /translation="MSKKIAVIGECMIELSEKGADVKRGFGGDTLNTSVYIARQVDPA
                     ALTVHYVTALGTDSFSQQMLDAWHGENVDISLTQRMENRLPGLYYIETDSTGERTFYY
                     WRNEAAAKFWLESEQSTAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRANG
                     GKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQPVEDVIARTH
                     NAGVKEVVVKRGADSCLVSIAGEGLVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT
                     GGSAENAAKRGHLTASTVIQYRGAIIPREAMPA"
     gene            31969..32736
                     /gene="pdeH"
                     /locus_tag="OQQ75_000562"
     CDS             31969..32736
                     /gene="pdeH"
                     /locus_tag="OQQ75_000562"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417982.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase"
                     /protein_id="HCS1975002.1"
                     /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL
                     MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLA
                     SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLGDF
                     GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE
                     TPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL"
     gene            32806..34866
                     /locus_tag="OQQ75_000563"
     CDS             32806..34866
                     /locus_tag="OQQ75_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1975003.1"
                     /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA
                     ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV
                     EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS
                     FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFG
                     LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG
                     VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD
                     SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS
                     VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP
                     LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE
                     LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC
                     AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP
                     LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS
                     QMKK"
     gene            complement(35100..36422)
                     /locus_tag="OQQ75_000564"
     CDS             complement(35100..36422)
                     /locus_tag="OQQ75_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HCS1975004.1"
                     /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA
                     AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL
                     TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA
                     LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS
                     LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST
                     AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLLILFALF
                     AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI
                     LGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETQHQSL"
     gene            complement(36833..37846)
                     /gene="yhjD"
                     /locus_tag="OQQ75_000565"
     CDS             complement(36833..37846)
                     /gene="yhjD"
                     /locus_tag="OQQ75_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HCS1975005.1"
                     /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK
                     VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML
                     LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI
                     RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH
                     LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI
                     KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK
                     TQP"
     gene            complement(37895..38794)
                     /locus_tag="OQQ75_000566"
     CDS             complement(37895..38794)
                     /locus_tag="OQQ75_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417978.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1975006.1"
                     /translation="MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQL
                     GTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGI
                     AKNLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLGK
                     LTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGG
                     MLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
                     RELSRRVNLFMQWLAGVMKEHLD"
     gene            39314..39916
                     /locus_tag="OQQ75_000567"
     CDS             39314..39916
                     /locus_tag="OQQ75_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1975007.1"
                     /translation="MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLES
                     YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP
                     RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
                     EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS"
     gene            complement(39967..41616)
                     /locus_tag="OQQ75_000568"
     CDS             complement(39967..41616)
                     /locus_tag="OQQ75_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
                     /protein_id="HCS1975008.1"
                     /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI
                     EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD
                     FDLRKFVENHFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ
                     SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY
                     LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP
                     DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD
                     TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVKRY
                     LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL
                     ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKLI
                     EKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP"
     gene            42020..43417
                     /gene="ccp"
                     /locus_tag="OQQ75_000569"
     CDS             42020..43417
                     /gene="ccp"
                     /locus_tag="OQQ75_000569"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HCS1975009.1"
                     /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV
                     SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL
                     LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA
                     SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGV
                     DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW
                     DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENA
                     LTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKE
                     ERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFL
                     HSLNGVYTPYMQDKQ"
     gene            43628..>44217
                     /locus_tag="OQQ75_000570"
     CDS             43628..>44217
                     /locus_tag="OQQ75_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS1975010.1"
                     /translation="MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVN
                     MVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG
                     PVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEA"
BASE COUNT        10626 a        11084 c        12020 g        10487 t
ORIGIN      
        1 tcccgttagc actaccggaa aattacccgc tgccggggat tatagcggta ttgctaccat
       61 acatgtcgaa ctggagtaac agtcatgaag cgaacaatac ttgcgttatg cctgctgcct
      121 ctttcctttt cgtcattcgc ggcaaccacg gatttagggc cgaaaggaac attgaaattc
      181 acccttaaaa tcagccaggg tgcttgcgaa ctggtgaaag acagcgttga ggttgacatg
      241 ggcaccgcgg ttctcaaaaa gccggtaaga atcggaacgg aaattaatcc cactcctttt
      301 tccatcggcc tgaaaaactg tagcgaagtg gtcagagcct acgtgactat ggacggtaca
      361 cccaatgcag acgactcaaa tctttttgcg ctggatgcgg gtggcgctac aggcgttggg
      421 ctgaaaatca aaaccgctgc tggagtacaa cagttcccgg aaaatacaac gccgataccg
      481 gttgagtttg caattaacgg tgatggcgca catcaactga actatatcgc cagctacgtg
      541 cctattcgcg ccgatgcaac tattggtcgc gcagatgcaa cggtcgactt tactgtacag
      601 tacagtacga ataatttcac atcttaaggg ccagttaact ggcccttttt actgcttttt
      661 gtaacgctaa agtctctttt caaacttgca tttttgtaaa tttgtgcttc atgcacactc
      721 tttccccaca ctttttcgct ttgctgtggt ctacttattc gcgcgtgtag attttactta
      781 tctgactacc tccgcacttt tcccctgccg ggcctgaaaa gccgctaagc agggtgttat
      841 cacctgtttg tccagggttt gtttgcatga gatacatcaa atcgattaca cagcagaagc
      901 tgagcttttt gcttgcaatc tatattggcc tttttatgaa tggcgcggtt ttttatcgcc
      961 gcttcggcag ctatgcgcac gattttaccg tctggaaagg cgtttctgct gttgttgaac
     1021 tggccgccac cgtactggtg accttctttt tactacgtct tctatcgctg tttggccgcc
     1081 gcagctggcg tattctggcg tcgctggtgg tgctcttttc cgcaggtgcc agctattaca
     1141 tgaccttcct taatgtggtc attggttatg gcatcatcgc ttccgtcatg accaccgata
     1201 tcgacctgtc aaaagaagtt gttggtctga actttattct ctggttaatc gccgttagtg
     1261 cattgcctct tatccttatc tggaataacc gctgtcgcta caccttgctc cgacaactgc
     1321 gaaccccagg gcagcgtatt cgcagcctgg cggtcgtcgt actggcgggt attatggttt
     1381 gggcaccgat tcgtttgctg gatatccagc agaagaaagt ggagagggcg accggcgttg
     1441 atttgccgag ttatggcggt gtcgtagcga actcttatct gccatcaaac tggctttctg
     1501 cgttggggct gtatgcctgg gcgcgggtcg atgaatcttc cgataataat tcattgctta
     1561 atccggcgaa gaagtttaca taccaggctc cacaaaacgt tgatgatact tatgtcgtgt
     1621 ttatcatcgg tgaaaccacg cgttgggacc atatgggtat tttcggctat gagcgtaata
     1681 ccacgccgaa actggcccag gagaaaaatc tggcggcgtt ccgtggttac tcctgtgata
     1741 ccgcaaccaa actctcactg cgttgcatgt ttgtacgtca ggggggcgcg gaagataatc
     1801 cgcagcgcac attaaaagaa cagaacattt tcgcggttct gaagcagtta ggattcagtt
     1861 ctgacctcta cgctatgcag agcgaaatgt ggttctacag caacacgatg gcggacaaca
     1921 ttgcttatcg tgagcagatt ggtgcggagc cacgtaatcg tggcaagccg gtagatgata
     1981 tgttgctggt agacgaaatg cagcaatcgc tagggcgcaa cccggatggt aagcatctga
     2041 tcattctgca taccaaaggt tcgcatttta actacaccca gcgttatccg cgtagcttcg
     2101 cgcagtggaa gccggaatgt attggtgttg atagcggctg taccaaagcg cagatgatca
     2161 actcctatga caactcggtg acctatgtgg atcactttat ctccagcgtg attgatcagg
     2221 ttcgcgataa gaaagcgatt gtgttctacg cagctgacca cggtgagtca attaatgaac
     2281 gcgagcacct gcacggcacg ccgcgtgaat tggcaccgcc ggagcagttc cgcgtaccga
     2341 tgatggtctg gatgtcagat aaatatctgg aaaatccggc caatgcgcag gcatttgcgc
     2401 agctgaaaaa agaagccgac atgaaagtgc cacgccgtca cgtagagctg tacgatacca
     2461 tcatgggttg tcttggctat acttcaccgg atggtggaat taacgaaaac aacaactggt
     2521 gtcacatccc gcaggcaaaa gaggcagcgg ctaactaagc ggcctgctga ctttctcgcc
     2581 gatcaaaagg cattttgcta ttaagggatt gacgagggcg tatctgcgca gtaagatgcg
     2641 ccccgcattc ggtgattggc gcagcctggt agcgcacttc gttcgggacg aaggggtcgg
     2701 aggttcgaat cctctatcac cgaccaaatt cgaaaagcct gctcagcgag caggcttttt
     2761 tgcatttgaa gcccatgagg atgagaacct ccgggggctg ggaggttcga ctcgacgtag
     2821 gcctgataag acgcgccagc gtcgcatcag gcaacggcac cgcacttatt gtcggatgcg
     2881 gcgcgaccgc cttattcgac caacacacca cacattttcc tgccaacttt gcgccccata
     2941 tctcactatc cattaacgga tttgtgacag aaaccattgt ctttttttat atttgcttaa
     3001 atcttttttt gcgttactta tggctggcgc tggcattttc cgctgtgcgt tttagcgttc
     3061 atggtattaa tcgctcagat atccaccttt tcctcagatt tttttcatta aatgcataaa
     3121 acttaatcac caaatgttgc taaatattaa gctgattgtt ctggttatgt tggagtagca
     3181 caaatttctc tgctgcaaat agctgtttga agttttttaa tctttgtttg tgggttctca
     3241 ccgttggtgt aaatcccggt tggctgtatt gacgttttca cattctgttg acagattgta
     3301 ggtcacgagg ggcattttat ggaggatccg cactgttaca ctgatgttaa ttagtacggc
     3361 atccccacct cataacgttg acccgaccgg gcaaaaaaca aaaaaggtca ggtagcgaca
     3421 acccactgca aagggttaaa acaacaaaca tcacaattgg agcagaataa tgcgtatttc
     3481 cttgaaaaag tcagggatgc tgaagcttgg tctcagcctg gtggctatga ccgtcgcagc
     3541 aagtgttcag gctaaaactc tggtttattg ctcagaaggc tctccggaag ggtttaaccc
     3601 gcagctgttt acctccggca ccacctatga cgcctcttcc gtaccgcttt ataaccgcct
     3661 ggttgaattt aaaatcggca ccactgaagt gataccgggc ctcgctgaaa agtgggaagt
     3721 cagctaagac ggtaaaatct ataccttcca tctgcgtaaa ggtgtgaagt ggcacgacaa
     3781 taaagaattc aaaccgacgc gtgaactgaa cgccgatgac gtggtgttct cgttcgaccg
     3841 tcagaaaaac gcgcaaaacc cgtaccataa agtctctggc ggcagctacg aatacttcga
     3901 aggcatgggc ttgccggagc tgatcagtga agtgaaaaag gtggacgaca acacagttca
     3961 gttcgtactg actcgcccgg aagcgccgtt cctcgctgat ctggcaatgg acttcgcctc
     4021 tattctgtca aaagaatatg ctgatgcgat gatgaaagcc ggtacaccgg aaaaactgga
     4081 cctcaaccca atcggaaccg gtccgttcca gttacagcag taccaaaaag attcccgtat
     4141 ccgctacaaa gcgtttgatg gctactgggg caccaaaccg cagatcgata cgctggtctt
     4201 ctctattacc cctgatgctt ccgtgcgtta cgcgaaattg cagaagaatg aatgccaggt
     4261 gatgccgtac ccgaacccgg cagatatcgc tcgcatgaag caggataaat ccatcaacct
     4321 gatggaaatg ccggggctga acgtcggcta cctctcgtat aacgtgcaga aaaaaccgct
     4381 ggatgacgtg aaagttcgcc aggcactgac ctacgcggtg aacaaagacg cgatcatcaa
     4441 agcggtttat cagggcgcgg gtgtatcagc gaaaaacctg atcccgccaa ccatgtgggg
     4501 ctataacgac gacgttcagg attacaccta cgatcctgaa aaagcgaaag ccttgctgaa
     4561 agaagcgggt ctggaaaaag gtttctccat cgacctgtgg gcgatgccgg tacaacgtcc
     4621 gtataacccg aacgctcgct gcatggcgga gatgattcag gcagactggg cgaaagtggg
     4681 cgtgcaggcc aaaatcgtca cctacgaatg gggtgagtac ctcaagcgtg cgaaagatgg
     4741 cgaacatcag acggtaatga tgggctggac tggcgataac ggggacccgg ataacttctt
     4801 cgccaccctg ttcagctgcg ccgcctctga acaaggttct aactactcaa aatggtgcta
     4861 caaaccgttt gaagatctga ttcaaccggc gcgtgctacc gacgaccata acaaacgcgt
     4921 tgaactgtac aagcaatcgc aggtggtgat gcacgatcag gctccggcac tgatcatcgc
     4981 tcactccacc gtgtttgaac cggtacgcaa agaagtcaaa ggctatgtgg ttgatccatt
     5041 aggcaaacat cacttcgaaa atgtctctat cgaataatta aaagccatac aagactgatg
     5101 gtaaaggcaa aactgcctga tgtgctccgc ttatcaggcc tacgaaaatt ctgcaatgta
     5161 ttgaatttac acgattttgt aggccggata aggcgttaac gccgcatccg gcataaacaa
     5221 agcgcacttt gtcaacaatc tgtatacccg gtggcgctgt gcctctgcgt gcagcgccat
     5281 ccggcagcaa tacttcattc tctgtccgac aagggcggga attgatttgt gagcaataca
     5341 gacacgcagt tccaggctgc gggtcactat agagaatccg ggttatgttg cagtttattc
     5401 tccgacgttt gggactcgtc atccccacgt ttatcggtat tacccttctc acatttgcct
     5461 ttgtccacat gatcccgggc gatccggtga tgatcatggc aggcgaacgt gggatctccc
     5521 ctgagcgtca cgcgcagctg ctggctgaac tcggcttaga taaaccgatg tggcagcagt
     5581 atctccatta catttggggc gtaatgcacg gcgatctagg catttcaatg aaaagccgaa
     5641 ttccagtatg ggaagagttc gtgccgcgct ttcaggccac gctggaactt ggcgtctgcg
     5701 cgatgatttt tgctacggca gtcggtattc cggttggtgt gctggctgcg gttaaacgcg
     5761 gttccatttt cgatcacact gcagttggcc tggcgctgac cggctactcg atgccgatct
     5821 tctggtgggg catgatgctg atcatgctgg tttcggtgca ctggaacctg acgcccgcct
     5881 ccggtcgcgt gagcgatatg gtgttcctcg atgactccaa tccgttaacc ggttttatgc
     5941 taatcgacac cgccatctgg ggtgaagacg gcaactttat cgatgccgtc gcccatatga
     6001 tcttgcctgc cattgtgctg ggtactattc cgctggcggt cattgtgcgt atgacacgct
     6061 cctcgatgct ggaagtgctg ggcgaggatt acatccgcac cgcgcgcgcc aaagggctaa
     6121 cccgcatgcg ggtgattatc gtccatgcgc tgcgtaacgc gatgctgccg gtggtgaccg
     6181 ttatcggcct gcaggtggga acattgctgg cgggggcgat tctgaccgaa accatcttct
     6241 cgtggcccgg tctgggacgc tggttgattg acgcactgca acgccgcgac tatccggtag
     6301 tgcagggcgg cgtattgctg gtggcgacga tgattatcct cgtcaacttg ctggtcgatc
     6361 tgctgtacgg cgtggtgaac ccgcgtattc gtcataagaa gtaaggggac atcatgtcac
     6421 aggttactga aaataaagtg attagcgcac cggtgccgat gaccccgtta caggagttct
     6481 ggcactattt taaacgcaac aaaggcgcgg tcgtcgggct ggtttacgtc gtcatcgtgc
     6541 tgttcatcgc gatctttgcc aactggattg caccctataa cccggcggaa cagttccgcg
     6601 atgcactgct cgccccgcca gcctggcagg aaggcggcag catggcgcac ttgctgggca
     6661 ccgatgacgt aggccgtgat atgctgtcgc gcctgatgta cggtgcgcgc ctgtcgctgc
     6721 tggttggctg tctggtagtt gtgttatcgc tgattatggg cgttattctc ggcctgatcg
     6781 ccggttactt tggcggccta gtcgataaca tcattatgcg cgtggtcgat atcatgctgg
     6841 cgctgccaag tctgctgctg gcgctggtgc tggtggcaat tttcggcccg tcgattggta
     6901 acgccgcgct ggcactgacc ttcgttgcct tgccgcacta tgtgcgctta acccgcgccg
     6961 ccgtgctggt ggaagttaac cgcgattacg tcaccgcgtc tcgcgtggcg ggtgccgggg
     7021 cgatgcgtca gatgtttatt aacatcttcc cgaactgcct tgcgccgctg attgttcagg
     7081 cgtcgctcgg tttctctaac gccattctcg atatggctgc tcttggtttc ctcggcatgg
     7141 gggcacagcc gccaacgccg gagtggggca ccatgctctc cgacgtgttg cagttcgcgc
     7201 aaagcgcctg gtgggtcgtg accttcccgg gtctggcgat cctgctgacg gtgctggcat
     7261 ttaacctgat gggtgacggt ctgcgtgacg cgctcgatcc caaactgaag cagtaagagg
     7321 ttcgagatgg cgttattaaa tgtagataaa ttatcggtgc atttcggcga cgaaagcgca
     7381 ccgttccgcg ccgtagaccg catcagctac agcgtaaaac agggcgaagt ggttgggatt
     7441 gtgggtgagt ccggctccgg taagtcggtc agttccctgg cgattatggg gctgattgat
     7501 tatccgggcc gcgtaatggc ggaaaaactg gtgtttaacg gtcaggattt gcagcgtata
     7561 tcagaaaaag agcgccgcaa cctggtgggt gccgaagtgg cgatgatctt ccaggacccg
     7621 atgaccagcc ttaacccgtg ctacaccgtg ggtttccaga tcatggaagc gattaaggtg
     7681 catcagggcg gcaacaaaag tacccgccgt cagcgggcga ttgacctgct gaatcaggtc
     7741 ggtattcccg atccggcttc gcgtctggat gtttacccgc atcagctttc cggcggcatg
     7801 agccagcgcg tgatgatcgc catggcgatt gcctgtcgac caaaactgct gattgccgat
     7861 gagccgacca ccgcgctgga cgtgaccatt caggcgcaaa tcatcgaact actgctggag
     7921 ctacagcaga aagagaacat ggcgctggtg ttgattaccc atgacctggc gctggtggcg
     7981 gaagctgcgc ataaaatcat tgtgatgtat gcaggccagg tggtggaaac gggcgatgcg
     8041 cacgccatct tccatgcgcc gcgtcacccg tatactcagg cattgctgcg tgcgctgcca
     8101 gaatttgctc aggacaaaga acgtctggcg tcgttgccag gtgtcgttcc cggcaagtac
     8161 gaccgcccga acggctgcct gcttaacccg cgctgcccct atgccactga cagatgtcgc
     8221 gctgaagaac cggcgctgaa tatgctcgct gacgggcgtc agtccaaatg ccattaccca
     8281 cttgatgatg ccgggaggcc gacactatga gtacgcaaga ggccaccctg caacaaccgc
     8341 tgttgcaggc tatcgacctg aaaaaacatt atccggtgaa gaaaggcatg ttcgcgccgg
     8401 aacgtctggt taaagcgctg gatggcgttt cgtttaacct tgaacgtggc aaaacgctgg
     8461 cagtagtggg cgaatctggc tgcggtaaat cgaccctcgg tcggttgctg acgatgattg
     8521 aaacgcccac cggtggcgag ctgtattacc aggggcagga tctgcttaag cacgatccgc
     8581 aggcgcagaa gctgcgtcgg cagaaaatcc agatcgtctt ccagaaccct tacggttcgc
     8641 tgaatccgcg taaaaaagtc gggcaaattc ttgaagagcc gctgctgatc aacaccagct
     8701 taagcaaaga acagcgtcgg gaaaaagccc tgtcgatgat ggcgaaagtc ggcctgaaaa
     8761 ccgagcacta tgaccgctat ccgcatatgt tctccggcgg tcagcgtcag cgtatcgcca
     8821 tcgcccgtgg tctgatgctc gacccggatg tggtgattgc cgatgaaccg gtttccgcgc
     8881 tggatgtttc agtgcgcgcg caggtgctga atctgatgat ggatttgcag caggagttgg
     8941 ggctgtctta tgtctttatc tcccacgacc tgtcggtggt ggagcacatt gctgatgaag
     9001 tgatggtgat gtacctgggc cgctgcgtgg agaagggaac gaaagaccaa atcttcaata
     9061 acccgcgcca tccgtacact caggcgctac tttccgcgac gccgcgcctg aacccggacg
     9121 atcgccgcga gcgcatcaag ctcagcggtg aactaccaag cccactgaat ccaccgccgg
     9181 gttgcgcctt caacgcccgc tgtcgtcggc gcttcggccc ctgcacccag ttgcagccgc
     9241 agctaaaaga ctacggcggt caactggtag cttgttttgc tgttgatcag gatgaaaatc
     9301 cgcagcgtta actcacaaaa ccggggccat gcgctccggt ttactcaatc agcttcaaca
     9361 gtggcgacaa gcatagcaaa atgccgtaaa gcagaattag ccaggcttta aatccgcgaa
     9421 gtttttccag ttgtgcgact ttatagatca ggaaaaacgg aatgaggcac gacacaatgc
     9481 catataacgg gcttcccaac tgaaagaaca ccagcaccga tacacgaaac gaaacccaaa
     9541 tcgtcaacgt aatgacgata aaagcgcaga tcgccagagt cagcatgcgt gagttaattt
     9601 tcttggtatc aataattcgg cttaacagat tgagaataat gcctttaata gcctcgtgga
     9661 aaccgagata aatgccaaag aatgcggtca gtacggcaaa gatattcagc accgtagagg
     9721 tgatatgaat gatatgtcca gggatcacct gcgcggccag tgccagtgcc gagatatttt
     9781 gttcaaaggc agaaacggct tcttcgtggc taattgagaa ggtaaacgaa aaggcaaaaa
     9841 acaggatcac cgcgatgagc gtgatataac taattcggtg ggtacgcagc gcgagccggg
     9901 ttgccagtac tttatctgct tcccgtttac gataggcaat attcattggg ttaagtacct
     9961 gaataaatac cgcagaaaag aagcaaaatg gaattgtaag caggacatcg cggaaaaaga
    10021 cggaggcttg cgggaaggcg gttatattgg cgaaattcca gtgcgggatc atcgcaaaac
    10081 cgaacacgac aataatccct actttgacca ccaccattgg cccggaaatc ttaaacagta
    10141 atcgttcacc accagacgca atcgctacca gtacggcgaa aatagcgact ttataaagta
    10201 gagattgtga aagatcggca tcggttaaac cgaaggtttt caggtacgag gcgctgtcga
    10261 aaaccacgga gagagagtag ataaaaatcc cgtggataat catcaaaaag tagataaccc
    10321 cgaggaaaat tccccagttc ttccccaggt aatgactgat aatatcggtg tagtcattac
    10381 aggaatcgct ttcagaaagg gtttttaaat aaatgtcctg cactacccag gtggcaggat
    10441 aagcaatgat cgctgcggta ataaataccc aaattccctt caagccaatt tgtactggca
    10501 tcagcacggt tccggcacca atcgccatgc ctatgcataa taaaacccag ccgaagtcgt
    10561 agcgtgtaaa cggcaatttc tgattgtgtt tcgatagtgt gttgtgctgc ataaagtcct
    10621 gtccagaaag aagtcggcct cgcaaaaatg aataaaccca gtttctcttg cgcaacaggt
    10681 ggagaagtcg aatacgcagt atgtaaaaaa tgaggcaaca gattcactgg ggaggtcgcg
    10741 aggaggcgca attctacaaa attgcgcatt tcactaccag tctggagtca gcccggatat
    10801 gaactgcaac tattgcaaat aaagaaatta agctggaagg catcgcgcaa tgaggaagat
    10861 tgccgggtgc tgacagtaaa aagcaatcgt aaaatcagcg gcaagccgaa agggttccgg
    10921 tgaggcgcaa tgttgcgggg gctttatccc tggtggcatt ggttgctgga gagagaaaac
    10981 ccccgcacgt tgcaggtatg cacctgacaa catcacgggg gctaatcttg aacccaaaca
    11041 actcaagaat agccgcgaaa cgttggcatt acaacacagg cggctatatg acgctcgcag
    11101 aactgggcat ggccttctgg catgatttag cggctccggt cattgctggc attcttgcca
    11161 gtatgatcgt gaactggctg aataagcgga agtaacgtgt catgcgggcg tcaggctgcc
    11221 gtaatggcaa tttgcgcccg gatcaggccg cagaggttaa actctgcggc ctttttcgtg
    11281 cttactgcgg gtaaggcacc cagtcgccgc cgttcaggcg aacgtacggt ttatcctggt
    11341 attgaataac tactgcattt gagttctcgg agaccggtgc tgtttgtggc aacccactgg
    11401 tgagtttttt ccagtcaaca ttgtcttcgg tgaaaatctt gccatcaaga acgcgaacca
    11461 ccagatcgga gatagccagg aagctgctcg gttggtcgat gacaatcggt gccccctgat
    11521 gtggtgcctt catgccgaag aatttcaccc caacggggac gtctgtgata gacgggctag
    11581 ggatatcacg taggccagat acctgcattc tgtcgccctt cagcgcgccg ccgtgttccg
    11641 gcaccacgac caccatcact ttacgacccg atttctccag ttcagtaaag aaggcgtcca
    11701 gttcatcaaa gaatttctgc gcccgcgctt tgtaatccgc tgttttgctg acccccggat
    11761 aatggttgcc gtcatgcagt ggaagcgtgt tgtagaacgt ggcactacgg ctgtttttat
    11821 ctttttcggt aacgtccagc cagcggttaa gcacggtggt atcgtcataa accggcgaac
    11881 catcaaagcc cagcaaaata accggcagat ttgtttgatc catcaattca gtctgcatgc
    11941 cgccattttc gcgaacttct ttcaaaaaac cgccgaactg gccgttatgt cccatcatca
    12001 ggtgctgggt aaagcccagt ttcgaaaggt tatcaaacag atagcagtcg ttatttgccg
    12061 gttgatacag attagtgtgc gaagtctgcc cgcagctggc gcgcagtaaa cggatcgccg
    12121 ccgggccact gtaggaggtg gcggagttaa agttcttgaa ctcaatatcg aaatgcgacc
    12181 acagtggatg cgacatcaac ccggcggctt ctatatccga ccaggaaagc gaacagatgt
    12241 taatcaccag tagttcaaat ggctgagcat cagcgggcag cgaagacggg aaggtcgatt
    12301 tacgtttcgc ctccgcgtta tagaaattat tcagccaggc gttaaggttc gccgttgttg
    12361 gcggtgtagt ttgtgcgggc atatcaccca ctaccggtgc gccacccgtc gtctcaacgg
    12421 ttgccgctgc gttaccaccc gtcgttgtta cagtggtcgt cggttgtccg gctggccaca
    12481 aggagaaact tggtcccgcc agggtaagta cgttcagcca tagcagtatg gcaaccacaa
    12541 aaacggtaat gcgaatccat tgtgacagga ataaccaggc cactaataaa acaaaaatgg
    12601 ccccaatcat ctgccagtta ataaagcgtg tgacaaggtc gattaaataa tcggtactga
    12661 accccgccac ctgcgaaccc tggctcatta tgctttccgg gccaggcaac caggtgtcat
    12721 gccagaacaa agcaaagccg atcggcaggg caatccagtg gcgcaagcga tgcaggctgt
    12781 agcgcggaat gggcatcagc agaaacgcgg caaacaccaa attgaggagc ggatggaagt
    12841 taagatatcc cgcccacaac aggccgaact taaccagaaa atagaagttc cagccggaaa
    12901 ggccgcgcca gtattgccag agggaagaag gcatggcggt attttgcgta aattgagtca
    12961 ttttttggtt gccctggctt tttccgtgcg gcgtaatgtc ccggctggtt taacataacg
    13021 aggtttagca aagaacaaac gtaaggtgtc gcgaatgcgt cgcaaagagt gccgcgccag
    13081 atagcccagc gggaaaaata tcagtgcgca aacgacaata atttcaatga tatcgctgat
    13141 ggtcatcatg atgagcgctc cacagcatca tctaacagtc gcatgggttc tggtattcgt
    13201 cgccagtggc gaccatcgtg ctcggcattg atgaccggtt tagaactttg cgttaaaggc
    13261 agcggcatgc cccattgttc tggggcaagc aggcgcatct gcaccagctc ggcactgatt
    13321 tgatcatctt caaaccagac catacggttt gagaaaatgt cgccagtagg caatgggaaa
    13381 atatgattca acgcggtatc cagatcgtta atccgacaga atgagagaaa cagcaccagc
    13441 cgattaccgc caatggtcat gatatcgccg gtacggttag ggcgacacag cgtcagggct
    13501 tgttcaacgc ggatacccgg taccggacgt agggcaacca gaacgccttt accgtgggca
    13561 ggtaatagag ggttattcat catgttgttg acggcattac agaacacatc ccacttctgg
    13621 aaaccacgca gtttgagcgg ctgggtcatt gacagcaagg tagtgatatc ttccggcaca
    13681 tagcgactaa acttctgccc ttgcacgctt tcgatcatcg tcagacaacg ggagagtggc
    13741 gcattccacg gaataaccat atttgcaccg caggccaata acaaacgttc atcggtggcg
    13801 cgcaggctag cggtattttc ccgcacgagg attttcatcg cactaccgcg ctggcgacgc
    13861 agggtatgaa tgctgcgggc cagtggctcg atttgcgcat tttgctgtaa agaaaagacc
    13921 accgtcgccg cctgagcggt acgggcttca ttgaacagga cttcgttatt gttgaacagt
    13981 tgccagtgtt ccgatagcgg cggcgcacct tccagtacag caacattact cagaatgcgt
    14041 ttttcgtcgc tgcgtggttg gatctccgcc tcttcgcttt gaactaatgt ccagatacca
    14101 ttttgttgct gaacgctaag ctgctgacgg gcgctgaccc ctttttcgtt gcaccagaag
    14161 gcaatatcca gcaaatgttg gtcaccctga aaacgcaaac tggcaagacc aaaaagtgaa
    14221 cggtattcct caagcaacaa tgaaaattgt ttatcgttat tatttccggg attaattacc
    14281 aaaagcgaac aatgggttaa cctgctccat ttattcattt tatccaacca tgagcgaagc
    14341 cgctcggcag gaatgttttg ccatgcgtta tttgcgcaaa caagaataaa aaggtaatta
    14401 tggggatcaa tagaacactg caaatcacgg gtcaaatagt atagaccttt ttcatgattt
    14461 agcattgaaa ataattttat tttttccggc ccttgataat catctaattg aaagattttc
    14521 gccggatcgc tgtccatgct aatgaccgcg acgtgtgcgg tttcagcctg ggatgcaatt
    14581 gtttgattcg ccagactgat agcatcttca tggcgatcga cgttaaacca ccagacgccg
    14641 cctgctggca tatgtcgcag ctcatcccat aatgatgaga taccgataga gaatacaggg
    14701 cccacaatgt ccctcatgtc accattttgt ctgattatca gtttactagc gaaagctaag
    14761 aaataaacct accattgaaa ttaaaactta tcagatttag catgtgaatc aatttagaag
    14821 atcacaagac gtgtgatttt agtcttttcg tttttaactt tttctgttgc gtaacggaaa
    14881 gtcaaaaagt gagcaaattc ccgtctcgcc gtaaacaata aaccggcgaa atgctcacgg
    14941 ttagaattgt ctcatgaacg gtacggttat ttcataggga tcaagcaaaa tgaataacaa
    15001 tgaaccagat actctgcctg atcccgcgat aggctatatc ttccagaatg atattgtggc
    15061 gttaaagcag gcattttcac tgcctgatat tgattatgcc gatatttccc aacgcgaaca
    15121 gttggccgcg gcattaaaac gctggccgtt gctggcagag tttgcgcaac aaaagtaggg
    15181 gattggtgaa tggccgtact gggattgcag ggggtgcggg gaggcgtggg gacaacaacc
    15241 atcaccgccg cattagcctg gtcattacaa atgttgggag aaaatgtcct ggtggtcgat
    15301 gcctgcccgg acaacttgtt gcgcctgtca tttaatgttg attttaccca ccgtcagggc
    15361 tgggccagag cgatgctgga tggccaggac tggcgtgacg ctgggttgcg ctacacctcg
    15421 cagctcgatt tgctgccttt tggtcagtta tccattgaag aacaagaaaa tccacagcac
    15481 aggcaaaccc ggctgagcga tatttgctcc ggcttacagc aactaaaagc cagcgggcgt
    15541 taccagtgga ttttaatcga cttaccgcgt gatgcctcgc agataaccca ccagctgctg
    15601 agtttgtgcg atcactcgct ggcaatcgtc aatgtggatg ccaactgcca tatccgactg
    15661 catcagcaag cgctgccgga tggcgcacat attttgatta atgacttccg tattggcagt
    15721 caggttcagg acgatattta ccagctttgg ttgcaaagcc agcgccgatt actgccgatg
    15781 ctcattcatc gtgatgaagc gatagctgaa tgcctggcgg ctaagcaacc agtaggtgaa
    15841 tatcgcagtg atgcgctggc ggctgaagag atactgacgc tggcgaactg gtgcctgttg
    15901 aactactccg ggctgaaaac gccagtcggg agtgcatcat gagtatcctg acccggtggt
    15961 tgcttatccc gccggtcaac gcgcggctta tcgggcgtta tcgcgattat cgtcgtcacg
    16021 gtgcgtcggc tttcagcgcg acgctcggct gtttctggat gatcctggcc tggattttta
    16081 ttccgctgga gcacccgcgc tggcagcgta ttcgcgcaga acataaaaac ctgtatccgc
    16141 atatcaacgc ctcgcgtccg ctggacccgg tccgttatct cattcaaaca tgctggttac
    16201 tgatcggtac atcgcgcaaa gaaacgccga aaccgcgcag gcgggcattt tcaggtctgc
    16261 agaatattcg tggacgttac catcaatgga tgaacgagct gcctgagcgc gttagccata
    16321 aaacacagca tcttgatgag aaaaaagagc tcggtcattt gagtgccggg gcgcggcggt
    16381 tgatcctcgg tatcatcgtc accttctcgc tgattctggc gttaatctgc gttactcaac
    16441 cgtttaaccc gctggcgcag tttatcttcc tgatgctgct gtggggtgta gcgctgatcg
    16501 tacggcggat gccggggcgc ttctcggcgc taatgttgat tgtgctgtcg ctgaccgttt
    16561 cttgccgtta tatctggtgg cgttacacct ctacgctgaa ctgggacgat ccggtcagcc
    16621 tggtgtgcgg gcttattctg ctcttcgctg aaacgtacgc gtggattgtg ctggtgctcg
    16681 gctacttcca ggtcgtatgg ccgctgaatc gtcagccggt gccattgccg aaagatatgt
    16741 cgctgtggcc gtcggtggat atctttgtcc cgacttacaa cgaagatctc aacgtggtga
    16801 aaaataccat ttacgcctcg ctgggtatcg actggccgaa agacaaactg aacatctgga
    16861 tcctcgatga cggcggcagg gaagagtttc gccagtttgc gcaaaacgtg ggggtgaaat
    16921 atatcgcccg caccactcat gaacatgcga aagcgggcaa catcaacaat gcgctgaaat
    16981 atgccaaagg cgagttcgta tcgattttcg actgcgacca cgtaccaacg cgatcgttcc
    17041 tgcaaatgac catgggctgg ttcctgaaag agaaacagct ggcgatgatg cagacgccgc
    17101 accacttctt ctcgccggac ccgtttgaac gcaacctggg gcgttttcgt aaaacgccga
    17161 acgaaggcac gctgttctat ggtctggtgc aggatggcaa cgatatgtgg gacgccactt
    17221 tcttctgcgg ttcctgtgca gtaattcgtc gcaaaccatt ggatgaaatt ggcggtattg
    17281 ctgtcgaaac ggtaaccgaa gatgcgcaca cgtctctgcg cctgcaccgt cgtggctaca
    17341 cctctgcata tatgcgtatt ccgcaggcgg cggggctggc gaccgaaagt ctgtcggcgc
    17401 atatcggtca gcgtattcgc tgggcacgcg ggatggtgca aatcttccgt ctcgataacc
    17461 cgcttaccgg taaagggctg aaattcgccc agcggctgtg ctacgtcaac gccatgttcc
    17521 acttcttgtc gggcattcca cgactgatct tcctgactgc gccgctggcg ttcctgctgc
    17581 ttcatgccta catcatctat gcgccagcgt tgatgatcgc cctgttcgtg ctgccgcata
    17641 tgatccatgc cagcctgacc aactcgaaga tccagggcaa atatcgccac tctttctgga
    17701 gtgaaatcta cgaaacggtg ctggcgtggt atatcgcacc accgacgctg gtggcgctga
    17761 ttaacccgca caaaggcaaa tttaacgtca ccgccaaagg tggactggtg gaagaagagt
    17821 acgtcgactg ggtgatctcg cggccctaca tcttccttgt tctgctcaac ctggtgggtg
    17881 ttgcggtcgg catctggcgc tacttctatg gcccgccaac cgagatgctc accgtggtcg
    17941 tcagtatggt gtgggtgttc tacaacctga ttgttcttgg cggcgcagtt gcggtatcgg
    18001 tagaaagcaa acaggtacgc cgatcgcacc gcgtggagat gacgatgccc gcggcaattg
    18061 cccgcgaaga tggtcacctc ttttcgtgta ccgttcagga tttctccgac ggtggtttgg
    18121 ggatcaagat caacggtcag gcgcagattc tggaagggca gaaagtgaat ctgttgctta
    18181 aacgcggtca gcaggaatac gtcttcccga cccaggtggc gcgcgtgatg ggtaatgaag
    18241 ttgggctgaa attaatgccg ctcaccaccc agcaacatat cgattttgtg cagtgtacgt
    18301 ttgcccgtgc ggatacatgg gcgctctggc aggacagcta cccggaagat aagccgctgg
    18361 aaagtctgct ggatattctg aagctcggct tccgtggcta ccgccatctg gcggagtttg
    18421 cgccttcttc ggtgaagggc atattccgtg tgctgacttc tctggtttcc tgggttgtat
    18481 cgtttattct gcgccgcccg gagcggagcg aaacggcaca accatcggat caggctttgg
    18541 ctcaacaatg atgataacgc gatgaaaaga aaactattct ggatttgtgc agtggctatg
    18601 gggatgagtg cgttcccctc tttcatgacg caggcgacgc cagcaacgca accactgatc
    18661 aatgctgagc cagctgtagc cgcccagacg gaacaaaatc cgcaggtggg gcaagtgatg
    18721 ccgggcgtgc agggcgctga tgcgccagtc gtggcgcaga acggtccttc gcgtgatgtg
    18781 aagctgacct ttgcgcaaat tgcgcctccg ccgggtagca tggtgctacg tggcattaac
    18841 ccgaacggca gcattgagtt tggtatgcgc agcgatgaag tggtgacgaa ggcgatgctc
    18901 aacctcgaat acatgccatc gccatcgtta ctgcctgtcc agtcgcagtt aaaggtttat
    18961 ctcaatgatg agctgatggg cgtactgcca gtgaccaaag aacagttggg taaaaaaacg
    19021 ctggcgcaaa tgcccattaa cccactgttt attaccgact tcaaccgtgt gcggctggag
    19081 tttgtcggcc attatcagga cgtgtgcgaa aacccggcca gcaccacgct ttggctggat
    19141 gttgggcgga gcagtggact ggatctgacc tatcagaccc tgaatgtgaa gaatgacctg
    19201 tcacacttcc cggtgccatt ctttgacccg cgcgataacc gtactaacac cttgccgatg
    19261 gtctttgcgg gtgcgccgga tgttgggctg caacaagcat ctgccattgt cgcctcgtgg
    19321 tttggttcgc gttctggctg gcgtgggcag aacttcccgg tgctctataa ccaactgccg
    19381 gatcgtaatg ccattgtctt tgcaaccaac gacaaacggc cggacttcct gcgcgatcat
    19441 ccggcggtaa aagccccggt gattgagatg atcaaccatc cgcagaatcc ttacgtcaaa
    19501 ctgctggtgg tgtttggtcg tgacgacaaa gacctgttgc aggcagcgaa aggtatcgct
    19561 cagggtaaca ttctgttccg tggtgaaagc gtggtagtga atgaagtgaa accgctgcta
    19621 ccgcgtaagc cgtacgatgc gccgaactgg gtacgtaccg atcgtccggt cacatttggc
    19681 gaactgaaaa cctatgaaga acagttacaa tccagcggtc ttgagccagc agcgattaac
    19741 gtttcgctaa acctgccgcc ggatctctac ctgatgcgca gtaccggcat tgatatggat
    19801 attaattacc gctacaccat gccgccggtg aaagacagtt cgcggatgga tatcagcctg
    19861 aataaccagt tcctgcaatc cttcaacctg agcagcaaac aggaggcgaa ccgcctgctg
    19921 ctgcggattc cggtattaca aggtttgctg gatggcaaaa cagatgtctc tattccggcg
    19981 ctgaaactgg gcgcgaccaa ccagctgcgc ttcgactttg agtatatgaa cccgatgccg
    20041 ggcggttcgg tggataactg tattaccttc cagccggtgc agaatcatgt ggtgattggt
    20101 gacgactcca ccatcgactt ctcgaagtat taccacttca tcccgatgcc ggatctacgc
    20161 gcctttgcta acgcgggctt cccattcagc cggatggcgg atctgtcgca aaccatcacc
    20221 gtgatgccga aagcgcctaa cgaagcacag atggaaacgt tgctgaatac tgttggtttt
    20281 atcggcgcac agacgggctt cccggcgatt aatctgacgg tgaccgatga tggcagcacc
    20341 attcagggca aagatgccga catcatgatc atcggtggta tcccggacaa actgaaagac
    20401 gataagcaga tcgacctatt ggtgcaggcg accgaaagct gggtgaaaac accgatgcgc
    20461 cagaccccgt tccccggcat tgtgccggac gagagcgatc gcgcggcaga aacccggtca
    20521 acgctgacct cttccggtgc gatggcggcg gtgattggct tccagtcgcc gtataacgac
    20581 cagcgcagcg tgattgcgct gttggcagat agcccacgcg gttatgaaat gcttaacgat
    20641 gcggtgaacg atagcggcaa acgcgccacc atgttcggtt cggtcgcggt gatccgcgag
    20701 tccggtatca acagcctacg tgttggcgac gtttattacg taggtcatct gccgtggttc
    20761 gagcgcgtgt ggtatgcgct ggcaaaccat ccgattctgc tggcggtgct ggcggctatc
    20821 agtgtgatat tgctggcatg ggtactgtgg cgtctgctgc gaattattag tcgtcgtcgt
    20881 cttaacccgg ataacgagta attgaagatg aatgtgttgc gtagtggaat cgtgacgatg
    20941 ctgttgttgg ctgcctttag tgttcaggca gcctgtacct ggcctgcctg ggagcagttt
    21001 aaaaaggatt acatcagtca ggaagggcgc gtcatcgacc ccagcgacgc gcgcaaaatc
    21061 accacctccg aagggcaaag ttacggtatg ttctttgccc tggcggctaa cgaccgtgca
    21121 gctttcgata atattctcga ctggacgcag aacaatctcg ctcagggttc tttaaaagaa
    21181 cgtttgcccg cctggctgtg gggcaagaaa gagaacagta agtgggaagt gctggacagc
    21241 aattcggcct ccgatggtga tgtctggatg gcctggtcgt tgctggaggc ggggcgtttg
    21301 tggaaagagc agcgttatac cgacatcggc agcgcgttgc taaaacgtat cgcgcgggag
    21361 gaagtggtga cggtgcctgg gctgggttcc atgttgttac cgggcaaagt gggttttgct
    21421 gaggataaca gctggcgttt taaccccagc tacctgccgc cgacgctggc gcagtatttc
    21481 acccgctttg gcgcgccgtg gactacgctg cgcgaaacca atcaacgttt attgctggaa
    21541 accgccccga aaggcttttc gccagactgg gtgcgttatg agaaagacaa aggctggcag
    21601 ctaaaagccg aaaaaacatt gatcagcagc tacgacgcca tccgcgttta catgtgggta
    21661 ggcatgatgc ctgacagcga tccgcagaaa gcgcggatgc tcaaccggtt taaaccgatg
    21721 gcgacattca ctgagaaaaa cggttatccg ccggaaaaag tggatgtggc tacggggaaa
    21781 gcgcagggta aaggaccagt cggtttttct gccgccatgc tgcccttttt acaaaaccgc
    21841 gatgcgcagg ccgttcagcg tcagcgcgtg gccgataact ttcccggcag cgatgcctat
    21901 tacaactatg tgctgaccct gtttggacaa ggctgggatc aacaccgttt ccgcttctcg
    21961 acaaaaggtg agttattacc tgactggggc caggaatgcg caaattcaca ctaaacatat
    22021 tcacgctttc cctcggtctg gccgtcatgc cgatggtcga ggcagcacca accgctcagc
    22081 aacagttgct ggagcaagtt cggttaggcg aagcgaccca tcgtgaagat ctggtgcaac
    22141 agtcgttata tcggctggaa cttattgatc cgaataaccc ggacgtcgtt gccgcccgtt
    22201 tccgttcttt gttacgttag ggcgatattg atggcgcgca aaaacagctc gatcggctgt
    22261 cgcagttagc gccgagttca aatgcgtata aatcgtcgcg gactacgatg ctactttcca
    22321 cgccggatgg tcgtcaggca ctgcaacagg cacgattgca ggcgacgacc ggtcatgcag
    22381 aagaagctgt ggcgagttac aacaaactgt tcaacggtgc gccgccggaa ggtgacattg
    22441 ctgtcgagta ctggagtacg gtggcgaaaa ttccggctcg ccgtggcgaa gcgattaatc
    22501 agttaaaacg catcaatgcg gatgcaccgg gcaatacggg cctgcaaaac aatctggcgc
    22561 tattgctgtt tagtagcgat cgccgtgacg aaggttttgc cgtcctggaa cagatggcaa
    22621 aatcgaacgc cgggcgcgaa ggggcctcta aaatctggta cgggcagatt aaagacatgc
    22681 ccgtcagtga tgccagtgtg tcggcgctga aaaaatatct ctcgatcttt agtgatggcg
    22741 atagcgtggc ggctgcgcaa tcgcaactgg cagaacagca aaaacagctg gccgatcctg
    22801 ctttccgcgc tcgtgcgcaa ggtttagcgg cggtggactc tggtatggcg ggtaaagcca
    22861 ttcccgaact acaacaggcg gtgcgggcga acccgaaaga cagtgaagct ctgggggcgc
    22921 tgggccaggc gtattctcag aaaggcgatc gcgccaatgc agtggcgaat ctggaaaaag
    22981 ccctcgcact ggacccgcac agcagcaaca acgacaaatg gaacagtctg ctgaaagtaa
    23041 accgctactg gctggcgatc cagcagggcg atgctgcgct gaaagccaat aatcctgacc
    23101 gggcagaacg cctgttccag caggcgcgta atgtcgataa caccgacagt tatgcagtgc
    23161 tggggctggg cgatgtggcg atggcgcgaa aagattatcc cgccgccgaa cgttattatc
    23221 agcagacctt gcgtatggac agcggcaaca ctaacgccgt gcgcgggctg gcaaatattt
    23281 accgccagca atcgccagaa aaagctgaag cgtttatcgc ctcgctctct gccagtcagc
    23341 ggcgtagcat tgatgatatc gaacgcagcc tgcaaaacga ccgtctggca cagcaggcag
    23401 aggcactgga aaaccagggc aaatgggcgc cggcggcagc acttcagcgg caacgactgg
    23461 cgctggaccc cggcagcgta tggattactt accgactttc gcaggatctc tggcaggccg
    23521 gacaacgcag ccaggccgat acgttaatgc gcaatctggc gcagcagaag tcgaacgacc
    23581 cggagcaggt ttacgcttac gggctgtacc tctctggtca tgaccaggac agagcggcgc
    23641 tggcgcatat caacagcctg ccgcgcgcgc agtggaacag caatattcag gagctggtta
    23701 atcgactgca aagcgatcag gtgctggaaa ccgctaatcg cctgcgagaa agcggcaaag
    23761 aagctgaagc ggaagcgatg ctgcgtcagc aaccaccttc cacgcgtatt gacctcacgc
    23821 tggctgactg ggcgcagcag cgacgtgatt acaccgccgc ccgcgctgca tatcagaatg
    23881 tcctgacgct ggagccaact aacgccgatg ccattctggg gctgacggaa gtggatattg
    23941 ctgccggtga cacagcggcg gcacgtagcc agctggcgaa actgcccgct accgataacg
    24001 cctcgctgaa cacacagcgg cgcgtggcgc tggcgcaggc gcagcttgga gataccgcag
    24061 cggcgcagca gacgtttaat aagttgatcc cgcaggcaaa atctcagcca ccgtcgatgg
    24121 aaagcgcgat ggtgctgcgc gacggtgcga agtttgaagc gcaggcgggc gatccaaagc
    24181 aggcgctgga aacctacaaa gacgccatgg tcgcatccgg tgtgactacg acgcgtccgc
    24241 aggataacga cacattcacc cgactgaccc gtaacgacga gaaagatgac tggctgaaac
    24301 gcggcgtgcg cagcgatgcg gcgggcctct atcgccagca ggatcttaac gtcaccctcg
    24361 agcacgatta ctggggttcg agcggcaccg gtggttactc cgatctgaaa gcgcacacta
    24421 ccatgttgca ggtggatgcg ccgtattctg acgggcggat gttctttcgc agtgatttcg
    24481 tcaatatgaa cgtcggcagt ttctccacta atgccgatgg caaatgggat gacaactggg
    24541 gcacctgtac attacaggac tgtagtggca accgcagcca gtcggactcc ggtgccagcg
    24601 tggaggtcgg ctggcgaaat gacgtctgga gctgggatat cggtaccacg ccgatgggct
    24661 tcaacgtggt ggatgtggtc ggcggcatca gttacagcga tgatatcggg ccgctgggtt
    24721 acaccgttaa cgcccaccgt cggcccatct ccagttcttt gctggccttt ggtgggcaaa
    24781 aagactcccc gagcaatacc gggaaaaaat ggggtggcgt acgtgccgac ggtgtggggc
    24841 taagtctgag ctacgataaa ggtgaagcaa acggcgtctg ggcatcgctt agtggcgacc
    24901 agttaaccgg taaaaatgtc gaagataact ggcgcgtgcg ctggatgacg ggctattact
    24961 ataaggtcat taaccagaac aatcgccgcg tcacaatcgg cctgaacaac atgatctggc
    25021 attacgacaa agatctgagt ggctactcac tcggtcaggg cggttactac agtccgcagg
    25081 aatacctgtc gtttgctata ccggtgatgt ggcgggagcg cacggaaaac tggtcgtggg
    25141 agctgggggc gtctggctcg tggtcgcatt cacgcaccaa aaccatgccg cgttatccgc
    25201 tgatgaatct gatcccgacc gactggcagg aagaagctgc gcggcaatcc aacgatggcg
    25261 gcagcagtca gggcttcggc tacacggcgc gggcattact tgaacgacgt gttacttcca
    25321 actggtttgt tggcacggca attgatatcc agcaggcgaa agattacgca cccagccatt
    25381 tcctgctcta cgtacgttat tccgccgccg gatggcaggg tgacatggat ttaccgccgc
    25441 agccgctgat accttacgcc gactggtaag ttttcagata gcgcctctct taatgccgct
    25501 gcgatcgggt atactcgggc ggcaatctgg gatttccggg gggagacaat ttgcgcgtaa
    25561 gtcgctcgtt aacaatcaag cagatggcaa tggtggcagc cgttgtcctg gtgttcgttt
    25621 ttattttttg caccgttttg ctgttccatc tggtccagca gaatcgctat aacacggcta
    25681 cgcaactgga aagcattgct cgctctgtac gcgaaccctt atcttcagct attttgaaag
    25741 gcgatattcc cgaagcggaa gctattcttg ccagcattaa accggcaggc gtggtcagcc
    25801 gtgccgatgt agtgctgcct aaccagttcc aggcgctgcg taaaagtttt attccagagc
    25861 gcccggtgcc ggtaatggtt actcgcctgt ttgagctacc ggttcaaatc tcgctgggcg
    25921 tttactcgct cgaacgtccg gcaaacccgc agccaattgc ctatctggta ctacaggcgg
    25981 attccttccg tatgtataag ttcgtgatga gcaccctctc aacgttagtg accatttact
    26041 tacttttgtc gcttatcctg accgtcgcca tcagctggtg cattaaccgc ctgattttgc
    26101 atccgttacg caatattgct cgcgaactta acgccatccc agcccaggag cttgttggtc
    26161 accaactggc attaccgcgt ctgcatcagg acgatgaaat cggtatgttg gtgcgcagtt
    26221 acaacctcaa ccagcaattg ctgcagcgcc attatgaaga acagaacgaa aatgcgatgc
    26281 gcttcccggt gtcggatttg ccgaacaaag ccttgctgat ggagatgctg gagcaggttg
    26341 tcgcgcgtaa acaaaccacc gcgctgatga tcatcacctg tgaaaccctg cgtgatactg
    26401 cgggcgtgct gaaagaggcg caacgagaaa ttctgctgct gacgctggtg gaaaaactca
    26461 aatcggtact gtcgccacgt atgatcctcg cgcagattag cggttatgac tttgctgtca
    26521 ttgccaacgg tgtacaggaa ccgtggcacg caatcacctt aggtcagcaa gtgctcacta
    26581 tcatgagcga gcgcctgccg attgaacgta ttcaactccg tccgcactgt agcattggcg
    26641 tggcgatgtt ctacggcgat ctcaccgccg aacagcttta cagtcgcgct atttctgcgg
    26701 catttaccgc tcgccataaa ggcaagaatc agattcagtt ctttgatccg cagcagatgg
    26761 aagccgccca gaagcggttg acggaagaga gcgatatcct taatgcactg gaaaatcatc
    26821 agtttgctat ttggttacag ccacaggtcg agatgaccag cggtaaactg gtcagtgcgg
    26881 aagtgttact gcgtatccag caaccggatg gcagttggga cctgccggat ggcttaatcg
    26941 atcgcattga gtgctgtggg ctgatggtta ccgtcggtca ctgggtgctg gaagagtcct
    27001 gtcgattgct tgcagcctgg caagagcgcg gcattatgct gcccttgtcg gtaaacctct
    27061 ctgcgctgca actgatgcac ccaaatatgg tggcggatat gctggaactg ttaacccgct
    27121 atcgcattca accgggaaca ctgattctgg aagtgacaga aagccgacgt attgacgacc
    27181 ctcatgctgc ggtggcaatc ctccgtccgc tgcgcaatgc cggagttcgg gtggcgctgg
    27241 atgatttcgg catgggctac gcagggctgc gtcagctgca gcatatgaaa tcgttgccaa
    27301 tcgacgtact gaaaatcgac aaaatgtttg ttgaaggctt gccggaagat agcagcatga
    27361 ttgctgcaat tatcatgctg gcgcagagcc tgaacttaca aatgattgcc gaaggcgtgg
    27421 agactgaagc acaacgcgac tggctggcaa aagcgggcgt tggtattgcc cagggcttcc
    27481 tttttgctcg cccactccct attaaaatct tcgaagagag ttacctggaa gaaaagtagc
    27541 taccccaaac tgattacaaa actttaaaaa gtgctggttt gtgcgagcca gctcaaactt
    27601 tttaaccttt ttgtttcaat tatgatccag gtacatttct gtgatgttgt ctgggtgtta
    27661 ttttaaggcc gcaggtacct cataacctta caagacctgt agttttacta aaggacaccc
    27721 tatgaaaacc tctctgttta aaagccttta ctttcaggtc ctgacagcga tagccattgg
    27781 tattctcctt ggccatttct atcctgaaat aggcgagcaa atgaaaccgc ttggcgacgg
    27841 cttcgttaag ctcattaaga tgatcatcgc tcctgtcatc ttttgtaccg tcgtaacggg
    27901 cattgcgggc atggaaagca tgaaggcggt cggtcgtacc ggcgcagtcg cactgcttta
    27961 ctttgaaatt gtcagtacca tcgcgctgat tattggtctt atcatcgtta acgtcgtgca
    28021 gcctggtgcc ggaatgaacg tcgatccggc aacgcttgat gcgaaagcgg tagcggttta
    28081 cgccgatcag gcgaaagacc agggcattgt cgccttcatt atggatgtca tcccggcgag
    28141 cgtcattggc gcatttgcca gcggtaacat tctgcaggtg ctgctgtttg ccgtactgtt
    28201 tggttttgcg ctccaccgtc tgggcagcaa aggccaactg atttttaacg tgatcgaaag
    28261 tttctcgcag gtcatcttcg gcatcatcaa tatgatcatg cgtctggcac ctattggtgc
    28321 gttcggggca atggcgttta ccatcggtaa atacggcgtc ggcacactgg tgcaactggg
    28381 gcagctgatt atctgtttct atattacctg tatcctgttt gtggtgctgg tattgggttc
    28441 aatcgctaaa gcgactggtt tcagtatctt caaatttatc cgctacatcc gtgaagaact
    28501 gctgattgta ctggggactt catcttccga gtcggcgctg ccgcgtatgc tcgacaagat
    28561 ggagaaactc ggctgccgca aatcggtggt ggggctggtc atcccgacag gctactcgtt
    28621 taaccttgat ggcacatcga tatacctgac aatggcggcg gtgtttatcg cccaggccac
    28681 taacagtcag atggatatcg tccaccaaat cacgctgtta atcgtgttgc tgctttcttc
    28741 taaaggggcg gcaggggtaa cgggtagtgg ctttatcgtg ctggcggcga cgctctctgc
    28801 ggtgggccat ttgccggtag cgggtctggc gctgatcctc ggtatcgacc gctttatgtc
    28861 agaagctcgt gcgctgacta acctggtcgg taacggcgta gcgaccattg tcgttgctaa
    28921 gtgggtgaaa gaactggacc acaaaaaact ggacgatgtg ctgaataatc gtgcgccgga
    28981 tggcaaaacg cacgaattat cctcttaatc tcaccactta tgcccgcact cccttccccg
    29041 agtgcgggtg tttgcgcata attgacccct gtgcctgaac ttaccacctg ggtgagttca
    29101 ggtttatttc acttcttccg tgacattttc atgttcttgc ggtctaacac gaagtgtttt
    29161 taacgtcatt tagactgact gacaacgggc agttttttat taccaggata gttgatcagg
    29221 ggttcacatg cagggcacaa aaattcgact tttagcgggc ggtttgctga tgatggccac
    29281 tgctggctat gtgcaggcag atgcgctcca gcctgatcca gcatggcaac aggggacgct
    29341 ttccaacggt ttacagtggc aagtgctgac caccccccag cgtcccagcg atcgtgttga
    29401 aattcgcctg ctggttaata ccggttcgct cgccgaaagt acacaacaga gcggttacag
    29461 tcacgccatc cctcgtattg cgctaacgca aagcggtggc cttgacgcag cacaggcgcg
    29521 ttcattgtgg cagcagggga tcgaccctaa acgcccgatg ccgccggtaa ttgtctctta
    29581 tgacaccacg ctgtttaatc tgagtttgcc caataaccgt aacgatttgc tgaaagaagc
    29641 gctctcttat ctggcaaatg ccactggcaa attgaccatc acaccagaaa ccatcaacca
    29701 cgcgctgcaa agtcaggaca tggtggcaac ctggcctgcc gatactaaag agggctggtg
    29761 gcgctatcgt ctgaaagggt caaccttgtt aggtcacgat cctgccgatc cgctgaaaca
    29821 acccgttgaa gcggaaaaaa ttaaagattt ctatcagaaa tggtacaccc cggatgcaat
    29881 gacgctactg gtggtgggaa acgtggatgc gcgctcggtt gtcgaccaaa tcaacaaaac
    29941 gtttggcgaa ctgaaaggca aacgtgaaac gccagctccg gtgccgacgc tttctccgct
    30001 gcgtgcggaa gcggtgagta ttatgactga cgcggtgcgt caggaccggt tatctatcat
    30061 gtgggatacg ccgtggcagc cgattcgtga atcagccgca ctgctgcgct actggcgtgc
    30121 ggacctggcc cgcgaggcgc tgttctggca tgttcagcaa gcgttaagcg ccagtaacag
    30181 caaagacatc ggtcttggat ttgactgccg tgtgctgtat ctgcgtgcgc agtgtgccat
    30241 caacatcgaa tcaccaaacg acaagctgaa cagcaacctt aatctggtgg cgcgtgaact
    30301 ggcgaaggtt cgcgataaag gtctgccgga agaagagttc aatgcgttag tggcgcaaaa
    30361 gaaactggag ctgcagaaac tgtttgccgc ctatgcgcgg gctgataccg atattctgat
    30421 gggtcagcgg atgcgttcgt tgcaaaatca ggtcgtcgat atcgcgccgg agcagtatca
    30481 gaaactgcgg caggatttcc ttaacagcct gacggtggag atgttaaatc aggatctgcg
    30541 tcagcagttg tcgaatgata tggcgttaat actgctgcag ccgaaaggcg agccggaatt
    30601 taacatgaaa gcgttgcagg cggcctggga tcaaatcatg gccccatcga ctgctgctgt
    30661 cgccacggat gacgtacatc ctgaagtgac ggatattcca cctgcacagt aatgcctgat
    30721 ggtgatgagt tagcacaacc atcaggtatt tatggatgag ctggatagag gggtaacact
    30781 ttatccagcc ttttgcatat gctgcgttta cgctggcatc gcctcacgcg ggataatcgc
    30841 gccgcgatac tgaataacgg tacttgcggt caggtgcccg cgtttcgccg cgttttccgc
    30901 actgccgccc gtcaaacgta ccgccagata accggcgctg aaagagtcgc cagctgcggt
    30961 ggtatcgatc actttttctt tcggcagttt caccgccgga acatccacta acccttcgcc
    31021 agcaatggac accaggcaag aatccgcccc gcgtttcacc accacttctt tcacgcccgc
    31081 gttatgggtg cgcgcaatga cgtcttccac cggctgttga ccccacagcg cgtcttcatc
    31141 gtccagcgtc aggaaggcga tatccgtgca ttccagcatt tgttggtaca cctgctgtgt
    31201 ctcttctttg ctggcccaca ggcgcggacg atagttattg tcgaaaatca cttttccgcc
    31261 gttggcgcgg cattcgcgca gcagggaaag cagcttttcg cggctggtcg ggcttaagat
    31321 cgccaggcta atcccgctca ggtagagata atcgaaattc gccagctctt cgcaaatcgc
    31381 cgtagactgc tcactctcca gccagaattt ggcggcggct tcgttccgcc agtagtagaa
    31441 cgtacgctcg ccggtgctgt cggtttcaat gtagtaaagg cccggcagac ggttttccat
    31501 ccgttgggtc agggaaatat caacgttctc gccgtgccag gcgtccagca tctgctggct
    31561 aaaactgtcc gttcccagcg ccgttacgta atgaacggtt aatgccgcag gatcgacctg
    31621 acgggcgata tagacggaag tgttcagggt atcgccgccg aaaccgcgct taacgtccgc
    31681 gcctttctcg gaaagctcaa tcatgcattc gccaatcacg gcaatctttt tggacatagt
    31741 cgtgaacctg atctgtaaaa aattagcgtt agtttgcgct gtggtggttt gctggtcaac
    31801 aatattaaaa cagtgttcca ttattttttt gagccagaac gtattcctga aagattccgt
    31861 tgtggagtga ggaaatttac cccggccagg cggtaaagtt ctgcccttac gcgccgataa
    31921 tctttgtcga gtccgggtag catcactttt aaacacagga catctttgat gataaggcag
    31981 gttatccagc gaataagcaa ccctgaagca agcatcgaga gcttgcagga acggcgtttt
    32041 tggttgcagt gtgagcgtgc ttacacctgg cagccgatct atcaaacatg cgggcggtta
    32101 atggccgtgg agctattaac ggtggtcacg catcccttga acccttcgca acgcctgccg
    32161 ccggatcgct attttactga aatcaccgtc agccatcgga tggaggttgt gaaagagcag
    32221 attgatttgc tggcgcaaaa agccgacttc tttatagagc acggcctgct ggcatcggtc
    32281 aatattgatg gccctacgct catcgccctg cgtcagcaac caaaaatcct gcgccaaatt
    32341 gagcgtcttc cctggctgcg tttcgaactg gtggagcata tccgtctgcc gaaagattca
    32401 acctttgcct cgatgtgtga atttggcccg ctgtggctgg gtgattttgg taccgggatg
    32461 gcaaatttct ctgcactaag tgaagtgcgt tatgactaca tcaaaatcgc gcgagaactg
    32521 tttgtgatgc tgcgtcagtc gccggaagga cgcacactct tttctcagct tttacatcta
    32581 atgaatcgct attgtcgcgg ggtgattgtt gagggcgtag aaacgccgga agagtggcgt
    32641 gatgtacaga actcgcccgc attcgccgca caaggctggt ttctttcacg cccggcaccg
    32701 atagaaacgc tgaatacggc ggttctggcg ctataagctg cctcattttc cgcctggctg
    32761 gactatcttt aggactggca caggaagaat atgaggaagc gaacgatgag caaggcaggc
    32821 aaaataactg ctgcgatttc aggggctttc ttgttgttga ttgtcgtggc gatcattttg
    32881 attgcaactt ttgactggaa tcgactcaaa ccgaccatca accagaaagt ctctgcggag
    32941 ttgaatcgtc cgttcgctat ccgtggcgat ctgggcgtgg tgtgggagcg gcaaaaacaa
    33001 gaaactggct ggcgcagctg ggtgccgtgg cctcatgtac atgcagaaga catcattctt
    33061 ggcaatccac cggatattcc cgaagtcacg atggtgcatt tgccgcgagt agaggcaacg
    33121 ctggcaccgc tggcgctgct gaccaaaacg gtctggctgc cgtggatcaa gctcgaaaag
    33181 cccgacgcgc gcctgattcg cctctccgaa aagaacaata actggacgtt taatctcgcc
    33241 aacgatgata acaaagacgc gaatgcaaag ccgtcggcat ggtcgtttcg gctggataat
    33301 attcttttcg atcaagggcg gatcgccatt gatgacaaag taagcaaagc ggatctggaa
    33361 atttttgttg atccgttagg caagccgctg ccgttcagcg aagttactgg atcgaaaggt
    33421 aaagcggata aagaaaaggt gggcgattac gtttttggcc tgaaggcgca gggacgttat
    33481 aacggtgaac cgctcacggg tacgggaaaa ataggcggta tgctggcgct gcgtggcgaa
    33541 gggacgccgt ttccggtaca ggctgatttc cgttcaggta atacccgtgt tgcttttgat
    33601 ggcgtcgtga atgacccaat gaagatgggc ggtgtcgatt tacggcttaa attttctggc
    33661 gattcactgg gtgatctcta tgaactgacg ggcgttctgc tgcccgatac cccgccgttt
    33721 gaaacggatg gtcggctggt agcgaaaatc gacactgaaa aatcgtcggt ctttgattat
    33781 cgcggtttta atgggcgaat tggcgatagc gatatccacg gttctctggt ctacaccacc
    33841 ggaaagccgc gaccaaaact ggaaggtgat gtcgagtcgc ggcaattgcg gctggcggac
    33901 ctgggaccgt tgattggcgt tgattcgggg aaaggggcag aaaagtcgaa acggtctgaa
    33961 cagaagaagg gcgaaaaaag cgttcagcct gcgggcaaag tgctgcctta tgaccgcttc
    34021 gaaaccgata aatgggacgt tatggatgcc gatgttcgct tcaaaggccg acgtatcgag
    34081 catggcagta gcctgccgat tagcgatctt tctactcata tcatcctcaa aaatgctgac
    34141 ctgcgcctgc aaccgctgaa atttggcatg gcgggcggca gcattgcggc gaatatccat
    34201 ctggaaggcg ataaaaagcc gatgcagggg cgggcagata ttcaggctcg tcgactgaaa
    34261 ctgaaagaac tgatgcccga tgtggaactg atgcagaaga cgctggggga aatgaacggt
    34321 gacgcggaac tacgcggtag cggtaactcg gtggcggcgc ttttaggcaa cagtaacggc
    34381 aacctgaaac tgttgatgaa tgacgggctg gtgagccgca acctgatgga gattgttggg
    34441 ctgaatgtcg gcaactacat tgtcggtgcg atatttggtg acgatgaggt gcgggtgaac
    34501 tgcgcggcgg cgaatctgaa tattgccaac ggcgtagcgc gcccgcagat ttttgctttc
    34561 gatactgaga acgcgttgat taatgttacc ggcacggcaa gttttgcttc ggaacagctg
    34621 gatttgacta ttgatccgga gagtaaaggg attcggatta tcacactgcg ttcgccgctg
    34681 tatgtgcgtg ggacgtttaa aaatccgcag gctggggtga aagccggacc gctgattgcc
    34741 cgtggtgccg ttgcggcggc actggcaacg ctggtaacac cggcggcggc gttattggca
    34801 ctgatctcac cttccgaagg ggaggctaat cagtgtcgga cgatattgtc gcagatgaag
    34861 aagtgatgag gttggattgt gtttgctggt gagttcggga gcagcgtgtt cccctcaccc
    34921 taatcctctc cccaaagggg cgaggagact gttttgtgcg tgttgaaaca acgagtaccg
    34981 cttttccgtt cactttctgg gggagggctg ttatgttcgc gatataacat ctcgctccgc
    35041 ttttctccct ctccctttca gggagagggc tggggtgagg gtggctgccc acacgatact
    35101 tacaacgact gatgttgcgt ctcatgggtc agcagcaggg cgattaacgt caagccagcc
    35161 atcgccgcca gatataaccc caccgcacct aacccgtagt tagtctgcaa ccaggctgcg
    35221 atatacggcg caacggaagc cccgagaatc gacgatacgt tgtaagagaa cgatgctccg
    35281 gtgtaacgca cttctgtcgg gaacagctct ggtaacagcg cgcccatcgg accgaaggtc
    35341 agccccatca gacttaaccc cagcagcagg aaggcaaaaa ccagaatcgg gttgccagaa
    35401 ccgagcaaag ggttaaaggc gaatagcgcg aacaggatga gcagcgtggt gatgattacc
    35461 atgcttttac ggcgaccaaa ggcatcagcc agtaatccag cgactggcac catcacgcca
    35521 aaaccaataa ctgccatcat caacatccac aacacttcgt tacgcggcag gccaagccca
    35581 actggcgcgg cggcggtact aaaggtcatg gagtagaccg tcatgatgta aaacagcgta
    35641 taggttgcca gcataatgaa cgtacccagt acggttacgc gaacatgttt ggtcagcagc
    35701 gtacccagcg ggatcttcac ctgttttttc gctttagcga ctttctcaaa caccggcgac
    35761 tcatgcagcg acacgcgaac atacaggccg ataatgacca gcaccgccga gaagataaat
    35821 ggcacacgcc agccccagct cataaactgc tcgtcggtca gtagccagga aagcagcaag
    35881 aaagtgccgt tggcaaagaa gaagccaatc ggtgcgccca gctgcgggaa ggagccgtac
    35941 aatgcacgtt tgcgcggtgg ggcgttttca gtcgccagca gcgccgcgcc gccccattca
    36001 ccacctaagc ccagaccctg accaaatcga gccagcgcca gcagcagcgg ggcgaaaata
    36061 ccaatcgtgg catagcctgg cagcagacca atcaccacgg tcgaaatccc catcgttagc
    36121 aacgaggcga ccagcgtcgc tttacgccca acgcgatcgc caaaatgacc aaaaacggca
    36181 gagccaatgg ggcgcgcgac gaaggcgatg gcgaaggtgg cgagcgactg tagcgttgct
    36241 gccgtaggat cgccctgcgg gaagaagata tgcggaaaca caataacggc cgcagtggcg
    36301 taaatgtaaa agtcgaagaa ctcaatggct gtgccaatga gagaggcgac aaggacttta
    36361 ttacgcgagt tgatcggcgt gtattcttgc tcgtggtcga gtgttgtggc tgttgcttgc
    36421 ataatctttt cttatttttt ggctaacgaa tagccatatt acgcacagca aaagcgatat
    36481 ttcaatgtgt aacaaatcgc ggaaatggtc aaaaaccagg caaaaagggg ataatgttta
    36541 ggccagtgat ttttcttcta tgaaatgctt cacataattt tataaatagt ggataaaact
    36601 ggtttcaggt taaataaaag ttaccaactg gatttatatg ctggggttat gagttagaat
    36661 gaaattgttt gctcccaaat agatggctga agaggctctg gggacgagtt tcaagaggtt
    36721 atgtgcgcat tatagccgga tgcgatgctg gcgcatctta tccggcctac ggggagccag
    36781 gccgaataaa atcgtatgcc ggataaggcg tttacgccgc atccggccta ttttaaggct
    36841 gcgttttccc tggcattcgc gggtcgtctt tatattcggc ggtggcaatc cacgccgcgc
    36901 aaaacagcgt caaacgggcg aagaagtaga aaaatgccat cagccccagc acggaaccaa
    36961 atgctgcgcc agagggggat ttcatcagcg atggcagggt gtaggtcatc acgattttaa
    37021 tcacttcaaa accaatagca gccagaaatg ttccgcgaat cagggctttt ttgcgcggac
    37081 ggtggcgcgg caaccgccag aagatccaga agaaaagcag atagttggcg aagatggaaa
    37141 tcgccaggcc aatcaatcgc cacgtcggtt tcagccactc aatgctgttc aggtgcaggg
    37201 cgctaataat catttgctgc gccgaaccgg caaccgaggt gatcgaaagc gtcacaatca
    37261 gcgcaatcaa caaaccaatc agtgaaataa aatcacgcag atattttacc cagaacttct
    37321 cctgatcttg cggcgagcgt tcccagacat cacgcgactg ggcacgaatc gcttcacgca
    37381 ggttacccat ccagttgatg ccggaataaa gtgccaccgc caggccgaca agccctacag
    37441 tcgtacgctg ctgaacggcg gtgttgatgg tgtttttcaa cgtggcggct agtgtcggat
    37501 cgctgatgtt ttgcagaatt ttgtcgaaga tatcctgtag caacatcgga tgggaggcca
    37561 gcacaaagcc ccctgcggca aacgacacca tcaaaatcgg gatcatcgac aaaaatgaga
    37621 aataggtgat agccgcacca aactggttac ccagccgatc gttaaagcgt tctgtcgcgc
    37681 gaatcaggtg cgcaataacc ggttggcgtt ggactttttc ggcagtggtg gtgacggttt
    37741 ccagcgcctg gctaactttg ccgcctttct cgctattatc caactgctta atcggctcgt
    37801 gctccagatc ctgggtggga cgtttgatct cgttttcctg cgtcatccgc tcttttgtcc
    37861 ttctgtcgtg gtcattctta aaaagtatag tcggtcagtc caggtgctct ttcattacgc
    37921 cagccagcca ctgcataaac aggtttacac gccgggaaag ctcccgacgc tgcgggtaaa
    37981 ccagcgaaag ggagagcggc tcggcacggt agccaggtaa tacttcaata agccgcccgg
    38041 cacgcagggc ttcgcgcacg gcaatgcgcg ggatctgaat aatccccaga ccggcaagac
    38101 cggcggcgag atagttttcg ctactattta ccgtcaacat gccgccagac ttaaaccact
    38161 ggacgccatt aacgctggca acctcaaaac ctaacggatg tacacccagg tgcggtgtat
    38221 aacgcactat tgcgtgtgaa gtcagatcat cggggctttg cggataacca aagcgcgtca
    38281 gatagtgcgg actggcacag ttgaccatgg tcagtttgcc gaggggacgg gcgataacgc
    38341 catcttccgg taacgcgcca gtgcgtatca cgcaatcaaa accatcatga agaatatcta
    38401 ccggacggtc atggctactc agttccagct caattcccgg atgcagatag agaaattccg
    38461 acaggcgcgg cagtaacagg tttttcgcga ttcctggcgg gatgtcgatg cgtaatttac
    38521 cgctgatact ggtggcatcc tgttgaaaca gaccgtccag ttcgttgaga ttactcaaca
    38581 catcttttgc ccgttgataa taggtcatgc cttctggcgt gagtttgacc cgtcgcgtgg
    38641 tgcgctggag aagctgggtg ccaagttgat gttccagtgc ctgtatctgg cgcgaaacac
    38701 ttccctttgg caaagcaaag aaatccgctg cgcgggaaaa actttccagc tccgcgactt
    38761 tgatgaacaa ctgcattgcg tgaattttat ccatttcttt gaccgattgt tgttcacagc
    38821 gaaacagtaa cgcgcatatc gcattgttta ttgttttttc taacatctaa tgccgggttt
    38881 cacaatgttg tcatgacgaa tgtggcgatt tctcagcagg aaaagggcgg aatagcttta
    38941 tgagaaaggt gaatcccctt aaacagagcg tatttttcag tgattccctt taaagtgaat
    39001 agaggacgta ttggctattt gtgcttattt ttgtctcatt gccatttgtt attttggctt
    39061 gtagtcgcgg aatttcattt ttaattgcat gcgtactaac caccaatata aggaaatcct
    39121 caaaattgtt ttaaatagtg ccctcgacat gtaatttcag gcgtttagct gtaactattt
    39181 atatcggtaa ctattttcta cgcgtcatct ctgtagaatg gccaccgcca aatggcgaat
    39241 tcttattttt tctcgcgggt aatacccttc cactacttaa gtctttttaa catattcagg
    39301 tggagattca gttatgcaaa tagtcatgtt tgacaggcag tcaatattta ttcatggaat
    39361 gaaaatcagt ttacagcagc gtattccagg ggtgagtatt cagggggcca gtcaggcaga
    39421 cgagttatgg caaaagctgg aaagttaccc tgaagcctta gttatgctcg atggcgatca
    39481 ggatggtgag ttttgctact ggttgctgca aaaaaccgtg gtgcagtttc ctgaggttaa
    39541 ggtgttaatc acggcgacgg attgcaataa acggtggtta caggaagtta tccattttaa
    39601 tgtgctggcc attgtgcctc gtgattcaac cgtcgagaca tttgcgttgg cggtaaatag
    39661 tgcggcgatg gggatgatgt ttctgcctgg agactggcgg acgacgccgg aaaaggacat
    39721 taaagatctc aaatcgttaa gcgcccgcca gcgggagatt ttaaccatgt tagcggcggg
    39781 cgagtcaaat aaggagatcg gcagagcgct gaatatcagt accggaacgg taaaagcgca
    39841 tctggaatcc ctgtatcgcc gtctggaagt gaaaaatcgc acccaggcgg caatgatgtt
    39901 aaatatctcc tcctgaagag gataatttta cagccagcag gaagttagcg gctggctgta
    39961 aaaatattat ggttcgccgt acaaaccaat taaacggcgt accacaccgt tagtccagcc
    40021 aaacccatcc tgcaacggat actcgccacc gccgccttcg cgtggaacac catcggcaat
    40081 atggtatttt tcgatcagtt tgtgctgttc cagatagaac tgattcaccg tcttcagcca
    40141 gcttcgcgcg atttcatcac ccagaaggtc atcgccgtac attttaaatc cctgaatcgc
    40201 catccattgt aacggtgccc agccgttggg tttatcccac tgttcaccgg tttcgtactc
    40261 gcttgccaga atcccgccag gtgtcagtaa ccgactgcgc acggcatttg ccagacgatc
    40321 ggcctgttca tggttcgcca taccgacata gagtggcaca atggcggcag cggaaaacag
    40381 cgccagttgt tcgcgtcgcc agtcgtaatc gcggtagatg ccgttttcat catcccagag
    40441 gtaacgcttt accgcatcgc gacgggcact ggccttctgg cggaacagtg cttctgtctc
    40501 tttctcgcct ttcagcgccg agatgttggc gatggcgctc tccagtttaa acaggaaggc
    40561 attcagatcg atggggatga actgggtggt acgaatactc gccagacgac cagtatcacg
    40621 cagccaacgg gaagagtaat cccaaccgga ggccgccccc gctcgtaaat cgcggtacac
    40681 ctcgttgggc gggcgaccag aatgtttcgc ggtttcaacg tcctcaagcc aggattcgtc
    40741 acgcggcgtg tcgcgatcgt cccagtaacg gttgagcagc gatccgtccg gcatccgcac
    40801 aacatggcga taggcctgat tagggatcaa cgattctgca ccgtccatcc agaaggcata
    40861 ttccattttc aggtggtcga gatagcggcg cgcaccgcgt acaccatctt cttcaaacaa
    40921 ctccaccatc agcgcaaaaa ccggtggttg cgagcggctc aaataatagg tgcggttgcc
    40981 gttggggatg tgaccgtagt tttcgatcat ccaggcgaag ttatcggcca tgcatttcag
    41041 caaatcttcc cgaccacttt ccgccagccc cagcatggtg aaataggaat cccaatagta
    41101 ggtttcgcta aaacggccgc ccgggacaat atatgactgc ggtagcgcca gcagagaaga
    41161 ccacggaatg tgatcctgtg gttcgcgggt tagcaccggc cacagctggt cgatatgctc
    41221 tttcagggaa ttttgcgggt ccgatacata ctcgctggag tagacctccg gcagccagaa
    41281 gtgattttca acaaacttgc gcaagtcaaa atcacgatga cggcgcactt tacggtagcg
    41341 gattaaaata tccagcgggt ccattttggg tgcgcagtcg ggaaaggttt tactgtcggg
    41401 gaaaattttc gccgactgaa catgctcgaa cagttcgaga tagcgatcgg caggcgtcag
    41461 cgcatcagag gcgggcagcc cttcaatcat ctcgggttcc ggttctgcct cgatcatctc
    41521 atccagtttt aattcatacg ggtccagttc atagcagaga tcgacttcga tcatcagttc
    41581 gtctggatta gggttttgaa ttttctgatt gagcataagg atccaacctc cgaaattcgt
    41641 cgctaattat cggcttttct ttaagggtag tcattcgctc cgcctggtgg gcgacaaagc
    41701 gtgcggtgga tcacgtttat taacttgtca aaaaatataa cgcactaata tcaatggaat
    41761 ttataaaaat acggatttgg tgttgttttt cattttcaga acattcaatc ctgctctcgc
    41821 cgcaatcatg atatgccatt cctgatctgg gtaataggca caggctatct tattgatagt
    41881 ttatattcat gtaattgatt gattcctatc aaaaagcgta tctccctgtt ttttatgatg
    41941 gctttgtctc gcagagacgt ttgcagcatt ctggaaaatt ttctgggtca caataactca
    42001 ccaccgtgag ggaagaataa tgaaaatggt ctcacgtatt accgcgatcg gcctggctgg
    42061 cgtcgcgatt tgctatttag ggttatctgg ttatgtgtgg taccacgata ataaacgcag
    42121 taaacaggcc gatgttcagg catctgctgt cagtgaaaat aataaggttt taggctttct
    42181 ccgcgaaaaa ggatgcgact attgccacac gccttcggca gaattacccg cctattatta
    42241 tattcctggc gcgaaacagt tgatggatta cgacattaag cttggatata aatcttttaa
    42301 cctcgaggcc gtgcgtgcgg cactgctggc tgataaaccc gtttcgcaaa gcgatctgaa
    42361 taagattgaa tgggtgatgc agtatgaaac tatgccacca acgcgttata ccgcgctaca
    42421 ctgggcgggt aaggtgagtg atgaagagcg ggcggaaata ctggcctgga ttgcaaaaca
    42481 gcgcgcggaa tattacgcca gcaatgatac tgctccggag catcgcaatg aaccggtgca
    42541 gcccatcccg caaaaactgc ctaccgatgc gcaaaaagtg gcgttgggct ttgcgctgta
    42601 tcacgatccc cgtttatcgg ctgatagcac catttcatgc gctcattgcc atgcgttgaa
    42661 tgcggggggc gtcgatggca gaaaaacatc gattggtgtt ggtggcgcag ttgggccgat
    42721 taacgcgccg acggtattta actcagtatt taacgttgag cagttctggg atggtcgtgc
    42781 ggcaacattg caggatcagg caggtggacc gccgttgaac ccgattgaaa tggcgtcgaa
    42841 atcctgggac gaaattattg ctaagctgga aaaagatccg cagcttaaag cgcagttcct
    42901 cgaagtttat ccgcaaggtt tcagtggcga aaatattact gatgccattg ctgaatttga
    42961 gaaaacatta attacgccgg attccccatt tgataaatgg ttgcgtggag atgaaaatgc
    43021 gctgacggcg caacagaaaa aaggctatca attatttaaa gataataaat gtgcaacttg
    43081 tcatggtggt attattctcg gcggacgttc ctttgaaccg ttggggctga aaaaagactt
    43141 taactttggg gaaattacgg cggcggatat tggtcgtatg aatgtgacta aagaagagcg
    43201 tgataaattg cgccagaaag tacccggttt acgtaacgtt gctttaacgg caccgtactt
    43261 ccatcgcggt gacgtgccga cgctggacgg ggcggtgaaa ctgatgctgc gctatcaggt
    43321 aggcaaagag ctgccgcagg aggatgtgga tgatatcgta gctttcctgc acagtctgaa
    43381 cggggtgtac acgccgtata tgcaggataa acaataacta atttgatcgc ccgaacagga
    43441 atgtttgggc gatttttatt acgataataa agtctgtttt taatattatc atgttaaatg
    43501 tttatattat aaaaagtcgt ttttctgctt aggattttgt tatttaaatt aagcctgtaa
    43561 tgccttgctt ccattgcgga taaatcctac ttttttattg ccttcaaata aatttaagga
    43621 gttcgaaatg gaccagaagc tgttaacgga tttccgctca gaactactcg attcacgttt
    43681 tggcgcaaag gccatttcta ctatcgcgga gtcaaaacga tttccgctgc acgaaatgcg
    43741 cgatgatgtc gcatttcaga ttatcaatga tgaattatat cttgatggca acgctcgtca
    43801 gaacctggcc actttctgcc agacctggga cgacgaaaac gtccataaat tgatggattt
    43861 gtcgatcaat aaaaactgga tcgacaaaga agaatatccg caatccgcag ccatcgacct
    43921 gcgttgcgta aatatggttg ccgatctgtg gcatgcgcct gcgccgaaaa atggtcaggc
    43981 cgttggcacc aacaccattg gttcttccga ggcctgtatg ctcggcggga tggcgatgaa
    44041 atggcgttgg cgcaagcgta tggaagctgc aggcaaacca acggataaac caaacctggt
    44101 gtgcggtccg gtacaaatct gctggcataa attcgcccgc tactgggatg tggagctgcg
    44161 tgagatccct atgcgccccg gtcagttgtt tatggacccg aaacgcatga ttgaagc
//
LOCUS       DAJVUP010000010        43401 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.010, whole genome shotgun sequence.
ACCESSION   DAJVUP010000010 DAJVUP010000000
VERSION     DAJVUP010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 43401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43401
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.010"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            164..421
                     /locus_tag="OQQ75_000571"
                     /pseudo
     CDS             164..421
                     /locus_tag="OQQ75_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            complement(471..1727)
                     /gene="nupG"
                     /locus_tag="OQQ75_000572"
     CDS             complement(471..1727)
                     /gene="nupG"
                     /locus_tag="OQQ75_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupG"
                     /protein_id="HCS1975011.1"
                     /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY
                     SSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILIN
                     SFAYMSTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHM
                     QLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSM
                     LLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLS
                     RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE
                     KEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSV
                     VLAFAFMAMFKYKHVRVPTGTQTVSH"
     gene            complement(1929..3008)
                     /gene="mltC"
                     /locus_tag="OQQ75_000573"
     CDS             complement(1929..3008)
                     /gene="mltC"
                     /locus_tag="OQQ75_000573"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417438.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HCS1975012.1"
                     /translation="MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQF
                     AHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRA
                     IIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLK
                     NRLQSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTES
                     SFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAM
                     LNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLT
                     TRHPSAESRRYLYKVNTAQKSYRRR"
     gene            complement(3073..3348)
                     /locus_tag="OQQ75_000574"
     CDS             complement(3073..3348)
                     /locus_tag="OQQ75_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HCS1975013.1"
                     /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH
                     KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK"
     gene            complement(3376..4428)
                     /gene="mutY"
                     /locus_tag="OQQ75_000575"
     CDS             complement(3376..4428)
                     /gene="mutY"
                     /locus_tag="OQQ75_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HCS1975014.1"
                     /translation="MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ
                     VATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG
                     KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
                     ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSL
                     YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQ
                     RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA
                     APVERLLQQLRTGAPV"
     gene            4589..5308
                     /gene="trmB"
                     /locus_tag="OQQ75_000576"
     CDS             4589..5308
                     /gene="trmB"
                     /locus_tag="OQQ75_000576"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HCS1975015.1"
                     /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV
                     MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA
                     CLASAHEEGLNNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP
                     FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK
                     FEQRGHRLGHGVWDLMFERVK"
     gene            5308..5634
                     /locus_tag="OQQ75_000577"
     CDS             5308..5634
                     /locus_tag="OQQ75_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HCS1975016.1"
                     /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD
                     FINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSEL
                     FDVWWD"
     gene            5818..6537
                     /locus_tag="OQQ75_000578"
     CDS             5818..6537
                     /locus_tag="OQQ75_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2884 domain-containing protein"
                     /protein_id="HCS1975017.1"
                     /translation="MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGE
                     NGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIAL
                     DKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLV
                     NQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGK
                     DVCSRVVTLEDSRKALVGNLK"
     gene            6713..7759
                     /gene="ansB"
                     /locus_tag="OQQ75_000579"
     CDS             6713..7759
                     /gene="ansB"
                     /locus_tag="OQQ75_000579"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HCS1975018.1"
                     /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK
                     SNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKT
                     DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD
                     KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK
                     HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF
                     DTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ
                     TKDPQQIQQIFNQY"
     gene            7876..8883
                     /locus_tag="OQQ75_000580"
     CDS             7876..8883
                     /locus_tag="OQQ75_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1202 family protein"
                     /protein_id="HCS1975019.1"
                     /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK
                     LDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM
                     LTSKGTPASGWSVNFYSFQSAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN
                     TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREEAFKKIHQQRDEFNK
                     QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS
                     RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVI
                     K"
     gene            complement(9038..10174)
                     /gene="hemW"
                     /locus_tag="OQQ75_000581"
     CDS             complement(9038..10174)
                     /gene="hemW"
                     /locus_tag="OQQ75_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HCS1975020.1"
                     /translation="MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL
                     CDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP
                     GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF
                     NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW
                     DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG
                     RILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEAAPRAEFSAYTGLC
                     EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE"
     gene            complement(10167..10760)
                     /locus_tag="OQQ75_000582"
     CDS             complement(10167..10760)
                     /locus_tag="OQQ75_000582"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HCS1975021.1"
                     /translation="MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL
                     TFIENAILKARHAAKVTGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKL
                     LETLKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF
                     FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG"
     gene            complement(10768..11058)
                     /locus_tag="OQQ75_000583"
     CDS             complement(10768..11058)
                     /locus_tag="OQQ75_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417428.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggU family protein"
                     /protein_id="HCS1975022.1"
                     /translation="MNAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD
                     GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN"
     gene            complement(11055..11621)
                     /gene="yggT"
                     /locus_tag="OQQ75_000584"
     CDS             complement(11055..11621)
                     /gene="yggT"
                     /locus_tag="OQQ75_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotic shock tolerance protein YggT"
                     /protein_id="HCS1975023.1"
                     /translation="MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVT
                     QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTI
                     GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL
                     LLYVINMGVAEVLQATGNILLPGMWMAL"
     gene            complement(11639..12343)
                     /gene="yggS"
                     /locus_tag="OQQ75_000585"
     CDS             complement(11639..12343)
                     /gene="yggS"
                     /locus_tag="OQQ75_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate homeostasis protein"
                     /protein_id="HCS1975024.1"
                     /translation="MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIA
                     EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT
                     IDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
                     RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM
                     VRIGTAIFGARDYSKK"
     gene            12361..13341
                     /locus_tag="OQQ75_000586"
     CDS             12361..13341
                     /locus_tag="OQQ75_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417425.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HCS1975025.1"
                     /translation="MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDV
                     EELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQ
                     LEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
                     YIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETG
                     HLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVAL
                     FELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL"
     gene            complement(13517..13933)
                     /gene="ruvX"
                     /locus_tag="OQQ75_000587"
     CDS             complement(13517..13933)
                     /gene="ruvX"
                     /locus_tag="OQQ75_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HCS1975026.1"
                     /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNL
                     IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE
                     ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY"
     gene            complement(13933..14496)
                     /locus_tag="OQQ75_000588"
     CDS             complement(13933..14496)
                     /locus_tag="OQQ75_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HCS1975027.1"
                     /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLE
                     NLKIEGILEKLKITPEPRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDN
                     TVMTTSRDVLETLGTDKQPSDVLVALGYASWEKGQLEQEILDNAWLTASADLNILFKT
                     PIADRWREAAKLIGVDILTMPGVAGHA"
     gene            complement(14605..15555)
                     /gene="gshB"
                     /locus_tag="OQQ75_000589"
     CDS             complement(14605..15555)
                     /gene="gshB"
                     /locus_tag="OQQ75_000589"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HCS1975028.1"
                     /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY
                     LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVLLMRKDPPFDTEFIYATYIL
                     ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK
                     PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEP
                     VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG
                     DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ"
     gene            complement(15568..16299)
                     /gene="rsmE"
                     /locus_tag="OQQ75_000590"
     CDS             complement(15568..16299)
                     /gene="rsmE"
                     /locus_tag="OQQ75_000590"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014226833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HCS1975029.1"
                     /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD
                     GSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL
                     GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC
                     AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG
                     PRVLRTETTALTAITALQVRFGDLG"
     gene            complement(16379..17086)
                     /gene="endA"
                     /locus_tag="OQQ75_000591"
     CDS             complement(16379..17086)
                     /gene="endA"
                     /locus_tag="OQQ75_000591"
                     /EC_number="3.1.21.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease I"
                     /protein_id="HCS1975030.1"
                     /translation="MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPG
                     TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG
                     RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK
                     AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV
                     QGNHNPYVQRACQARKS"
     gene            complement(17181..17678)
                     /locus_tag="OQQ75_000592"
     CDS             complement(17181..17678)
                     /locus_tag="OQQ75_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HCS1975031.1"
                     /translation="MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG
                     TSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM
                     MENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGE
                     QLVAK"
     gene            complement(17755..19149)
                     /gene="galP"
                     /locus_tag="OQQ75_000593"
     CDS             complement(17755..19149)
                     /gene="galP"
                     /locus_tag="OQQ75_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/proton symporter"
                     /protein_id="HCS1975032.1"
                     /translation="MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIA
                     DEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA
                     PNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS
                     DTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTS
                     AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPK
                     IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVL
                     GTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA
                     TNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERN
                     LMKGRKLREIGAHD"
     gene            complement(19585..20739)
                     /gene="metK"
                     /locus_tag="OQQ75_000594"
     CDS             complement(19585..20739)
                     /gene="metK"
                     /locus_tag="OQQ75_000594"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HCS1975033.1"
                     /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET
                     YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD
                     INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW
                     LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT
                     SATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF
                     DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK"
     gene            complement(21043..21258)
                     /locus_tag="OQQ75_000595"
     CDS             complement(21043..21258)
                     /locus_tag="OQQ75_000595"
                     /inference="COORDINATES: protein motif:HMM:NF037550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975034.1"
                     /translation="MGITSAGMQSRDAECGERIFTRTVRQVKQQTTVHYFVSPPRPPV
                     KTNPQAKTLISTRLEVATRKKRRVLFI"
     gene            21394..21525
                     /gene="yqgB"
                     /locus_tag="OQQ75_000596"
     CDS             21394..21525
                     /gene="yqgB"
                     /locus_tag="OQQ75_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417414.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response protein YqgB"
                     /protein_id="HCS1975035.1"
                     /translation="MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII"
     gene            21534..23510
                     /gene="speA"
                     /locus_tag="OQQ75_000597"
     CDS             21534..23510
                     /gene="speA"
                     /locus_tag="OQQ75_000597"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HCS1975036.1"
                     /translation="MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWW
                     GNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRS
                     INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA
                     HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPR
                     LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQ
                     MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE
                     YANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAE
                     DAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGTFSLQERAWAEQ
                     LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL
                     PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG
                     AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQF
                     RDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE"
     gene            23647..24567
                     /gene="speB"
                     /locus_tag="OQQ75_000598"
     CDS             23647..24567
                     /gene="speB"
                     /locus_tag="OQQ75_000598"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HCS1975037.1"
                     /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM
                     ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS
                     EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE
                     FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ
                     IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA
                     PAYDQSEITALAAATLALEMLYIQAAKKGE"
     gene            complement(24773..25531)
                     /gene="loiP"
                     /locus_tag="OQQ75_000599"
                     /gene_synonym="yggG"
     CDS             complement(24773..25531)
                     /gene="loiP"
                     /locus_tag="OQQ75_000599"
                     /gene_synonym="yggG"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease LoiP"
                     /protein_id="HCS1975038.1"
                     /translation="MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQ
                     VKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAF
                     AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA
                     GGIVGSLSQSQLGDLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLA
                     KLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK"
     gene            25809..27800
                     /gene="tkt"
                     /locus_tag="OQQ75_000600"
     CDS             25809..27800
                     /gene="tkt"
                     /locus_tag="OQQ75_000600"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1975039.1"
                     /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF
                     LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE
                     VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME
                     GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG
                     HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ
                     LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP
                     SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG
                     SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL
                     MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE
                     RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA
                     AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG
                     LNGAIIGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL"
     gene            28114..28557
                     /gene="cmtB"
                     /locus_tag="OQQ75_000601"
     CDS             28114..28557
                     /gene="cmtB"
                     /locus_tag="OQQ75_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IIA"
                     /protein_id="HCS1975040.1"
                     /translation="MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ
                     AIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIG
                     LSAADADSHIGAIQALSELLCEEEILEQLLTASSEKQLADIISHR"
     gene            28585..29973
                     /gene="cmtA"
                     /locus_tag="OQQ75_000602"
     CDS             28585..29973
                     /gene="cmtA"
                     /locus_tag="OQQ75_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HCS1975041.1"
                     /translation="MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWL
                     PNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSM
                     IMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANT
                     FVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMV
                     ASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIA
                     GGMSGTWMFNLLDGGLVAGPSLGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLI
                     LKMEKTVETESEDEFAQSTNAVKAMKQEGAFSLSRVKRIAFVCDTGMGSSAMGATTFR
                     KRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLD
                     TLFNQLTAEHKH"
     gene            29988..31265
                     /locus_tag="OQQ75_000603"
     CDS             29988..31265
                     /locus_tag="OQQ75_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS1975042.1"
                     /translation="MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWK
                     AALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSG
                     YSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLVEPMCCIIGAYHANYH
                     TTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQV
                     QKLLPVDLAASKGIELVYVNTKGMSDPVQTLRALTGDVGFDDIFVYAAVPAVVEMADE
                     LLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQL
                     QPSFMVTHIGGLDAVPDTVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKE
                     LARLVEETHGIWNEQAEKYLLAQFGIDIGEAAQ"
     gene            31262..32227
                     /gene="yggF"
                     /locus_tag="OQQ75_000604"
     CDS             31262..32227
                     /gene="yggF"
                     /locus_tag="OQQ75_000604"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS1975043.1"
                     /translation="MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALN
                     DVAFRGRVVIGEGEIDHAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAV
                     MAFAPRDSLLHAPDMYMKKLVVNRLAAGVIDLSLPLADNLRNVARALGKPLDKLRMVT
                     LDKPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISAC
                     AVKALGGDMQAELIDFCQAKGDYTENRQIAEQESKRCKAMGVDVNRVYSLDELVRGND
                     ILFSATGVTGGELVNGIQQTANGVRTQTLLIGGADQTCNIIDSLH"
     gene            32249..32758
                     /gene="fumE"
                     /locus_tag="OQQ75_000605"
     CDS             32249..32758
                     /gene="fumE"
                     /locus_tag="OQQ75_000605"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarase E"
                     /protein_id="HCS1975044.1"
                     /translation="MAKLTEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVD
                     NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQD
                     ETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
                     TTILKELTP"
     gene            32755..33468
                     /locus_tag="OQQ75_000606"
     CDS             32755..33468
                     /locus_tag="OQQ75_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside/nucleotide kinase family protein"
                     /protein_id="HCS1975045.1"
                     /translation="MKIELTVNGLKIQAQYQNEEIENVHKPLLRMLAALQTVNPQRRT
                     VVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGA
                     PETFDVAKLAENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK
                     WCQLAQFCDFSIFINAPATALRERLVGRKLAGGVSLADAETFYDRTDGPNVRRVLEES
                     LPANLTLMMTATGEYRLVD"
     gene            complement(33440..34117)
                     /locus_tag="OQQ75_000607"
     CDS             complement(33440..34117)
                     /locus_tag="OQQ75_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708691.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS1975046.1"
                     /translation="MLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKST
                     LLRVMAGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFG
                     LKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAVACLEALSPPLLLL
                     DEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVN
                     PPDDIHP"
     gene            complement(34111..34788)
                     /locus_tag="OQQ75_000608"
     CDS             complement(34111..34788)
                     /locus_tag="OQQ75_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HCS1975047.1"
                     /translation="MVTLEQFRYCPTHSTHPPFCYDFHYVKPGMVAIFGDNGSGKSTL
                     AQLMAGWYPDFLPGEITGTGTLLGTPIGHLPLNEQSATIQLVQQSPYLQLSGCTFSVE
                     EEVAFGPENLCLAEAEIMARIDAALTLTECQPLRHRHPATLSGGETQRVVIACAIAMQ
                     PKLLILDEAFSRLTPQASEMLLQRLQHWAFERGSLIILFERHRTPFLNYCQQAWQLQN
                     GALQPLC"
     gene            complement(34776..35483)
                     /locus_tag="OQQ75_000609"
     CDS             complement(34776..35483)
                     /locus_tag="OQQ75_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HCS1975048.1"
                     /translation="MHPFTSLTLWALAACTTLILPAQTILPIYSAATFFCLIALKATR
                     RRAKYVVWLMFSLGAGLWLVHGGWLPEWLSGTPRSPERWSHAITLWLRILVIVSTSQL
                     WMQYVPVQCFIRALFASRLPPGVAYLFAGPLLVVEQLKRQLAIIHEAQRARGVPLDEG
                     WYQRLRAMPALIIPLTHNALNDLAVRGAALDMRAFRIHNRRTTLWAPADSTLQRVARY
                     TMILLMLTEFGAWIWLR"
     gene            complement(35484..36062)
                     /locus_tag="OQQ75_000610"
     CDS             complement(35484..36062)
                     /locus_tag="OQQ75_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HCS1975049.1"
                     /translation="MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLI
                     SAVLLGPVIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV
                     VVSGVIITLAVTVVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL
                     VDKILTAVIVWLLLRQLPIRTTRHFPAMAAVR"
     gene            complement(36085..36516)
                     /locus_tag="OQQ75_000611"
     CDS             complement(36085..36516)
                     /locus_tag="OQQ75_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1975050.1"
                     /translation="MMTLPYPYSSSARFYALRLLPGQEVFSQLHAFAQQHQLHAAWIA
                     GCTGSLTDVALRYARQEGTTLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTMLGGHM
                     MPGCTVRTTLELVIGSLEELAFSRQPCALSGYDELHISPVK"
     gene            36888..37907
                     /gene="epd"
                     /locus_tag="OQQ75_000612"
     CDS             36888..37907
                     /gene="epd"
                     /locus_tag="OQQ75_000612"
                     /EC_number="1.2.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HCS1975051.1"
                     /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM
                     AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV
                     YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI
                     IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG
                     ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV
                     DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA
                     TVAFR"
     gene            37957..39120
                     /gene="pgk"
                     /locus_tag="OQQ75_000613"
     CDS             37957..39120
                     /gene="pgk"
                     /locus_tag="OQQ75_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HCS1975052.1"
                     /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI
                     ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA
                     EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV
                     ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA
                     NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVND
                     VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA
                     FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK"
     gene            39335..40414
                     /gene="fbaA"
                     /locus_tag="OQQ75_000614"
     CDS             39335..40414
                     /gene="fbaA"
                     /locus_tag="OQQ75_000614"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HCS1975053.1"
                     /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN
                     AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG
                     VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK
                     YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT
                     IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLSFVFHGGSGSTAQEIK
                     DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW
                     LRAGQTSMIARLEKAFQELNAIDVL"
     gene            40772..41632
                     /gene="mscS"
                     /locus_tag="OQQ75_000615"
     CDS             40772..41632
                     /gene="mscS"
                     /locus_tag="OQQ75_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small-conductance mechanosensitive channel MscS"
                     /protein_id="HCS1975054.1"
                     /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII
                     ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA
                     AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG
                     KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD
                     REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVN
                     FKRVKEDKAA"
     gene            41771..42406
                     /gene="argO"
                     /locus_tag="OQQ75_000616"
     CDS             41771..42406
                     /gene="argO"
                     /locus_tag="OQQ75_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine exporter ArgO"
                     /protein_id="HCS1975055.1"
                     /translation="MFSYYFQGLDLGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCA
                     ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAE
                     VLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF
                     FGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS"
     gene            42499..43239
                     /locus_tag="OQQ75_000617"
     CDS             42499..43239
                     /locus_tag="OQQ75_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative stress defense protein"
                     /protein_id="HCS1975056.1"
                     /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI
                     ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG
                     KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA
                     AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA
                     AIQFDDQVDVVFQLEPVDQQPAKTPAAQ"
BASE COUNT        10610 a        10832 c        11561 g        10398 t
ORIGIN      
        1 atctaacccg acgtacaatg tgttattgtt gttcatgctg gcctccgtgg tggaaatacc
       61 ggggtgtagc aacagctcac ccatgcggct ctgacaacga tgttaacccg cgttaaatat
      121 cccacgttgg ccagcatctg tctcacggaa agtcatactg ccttatattc gcggtgaagt
      181 ggagttggtg cggattcgtg atgccgaagg gcgaattgcg gcagaagggg cgttgcctta
      241 tccacctggc gtgctttgcg tggtacccgg ggaagtctgg ggtggggcgg ttcaacgtta
      301 tttccttgca ctggaagaag gggtaaattt gttgccggga ttttcgccgg agctgcaagg
      361 tgtttatagc gaaaccgatg cggatggcat gaaacggttg tacggttatg tgttgaagta
      421 agaataaaaa aaacgggtca ccttctggcg acccgttttt ctttgcgtaa ttagtggcta
      481 accgtctgtg tgcctgtcgg gacacgaacg tgtttatatt tgaacatcgc catgaacgcg
      541 aaggccagaa ccacggagta accagcgaaa atcaaccata cggtctgcca gtcggtaatg
      601 ccgttttggg tgtacatctc aacaacttta ccgctcacga tgccgccgag gatacagccg
      661 aagccgttag tcatcatcag gaacatccct tgtgcactgg cgcgaattgc cgggctaact
      721 tctttttcga caaacaccga accagagatg ttgaagaagt cgaatgcgca accgtaaacg
      781 atcatcgaca gtaccagcag tacagtaccg aacggagtcg ggtcgccgta agcaaacagc
      841 gcaaaacgca ggatccacgc cacaatactg atcatcatta cgttcttaat accgtagcgg
      901 cttaagaaga acgggatggt cagaatgaac agggtttcag agatctgcga aatcgacatg
      961 atgattgacg catgctgcac aataaagctg ctggcaaaca tcggatcttt gtcgaagctg
     1021 tgcaggaagg tattaccgaa catgttggta atctgcagtt ccgcgcccag cagcattgag
     1081 aagataaaga agattgccat acgcttgttt ttaaacagcg cgaatgcatc gaggcccagc
     1141 agggttgtcc agctctgatt cgcttgctgt ttagcaaccg gaatatgcgg cagagtcagg
     1201 gtaaacagaa ccagaatggc ggaaagtgct gcgccaatat acagctgcat gtggcttaat
     1261 tcgaagccag acaggctcac cacccacatt gccatgataa agccgatggt gccccagata
     1321 cggattggcg ggaagtcagt aacgatatcc atcccggcat tttgcaggcg atagtaagag
     1381 atggtgttga ttaacccaag cgttgacata taagcaaacg agttaatcaa tatcacaagg
     1441 aacatcgcct ccggtgtcgt gacctgtgcc gccatgaaca gcgtgatagc gccaatggtg
     1501 tggcaaatgg catataccca tttcgcactt aaccatttgt cggccacaat ccccagcagc
     1561 gcaggcataa agaccgctgc gatacccagt gagctataaa ctgcgccaat agaagcaccg
     1621 tcaaacttca gggtaacaaa catataggag ccgagggtcg tcagccaact tccccacaga
     1681 cagaactgca gaaaagagag gattttcagc tgcagcttaa gattcatgtt aatttcctca
     1741 catcgtgatg cggatgagtg tttgaaaaag cacatttgac cgtgcgagat gatgggattc
     1801 tatcaacttc gcggactggt tttttgttac ctgtggcaaa taattgcaaa cattcccaat
     1861 ttgcaaaacg aaattgtgat gtggataaca tttttgcccc tgagcatcgt caggggcggt
     1921 taatggaatt atcggcggcg gtaggatttt tgcgcggtat tcactttata aagataacgg
     1981 cgagattccg cagagggatg gcgggtcgtc agcgtctgat aaacatcgcc cggcgtcatg
     2041 gtgttaataa tattggcagc ctgaatctta tcattcgaaa agactcgcag cacgctgcct
     2101 gcgccgccgt tataggcggt gatgacggca taacgccgcg atgttgggtt atcaattccg
     2161 ccgagataaa cattgttcag catcgccaga tacgcggtgc cggtatcaat attgctggca
     2221 ggatcaaaca agaaactgcg gctcggcgtg ccggatttcc cctgcgagcg gaacacatct
     2281 ttcccggcag tatgttgtac cacctgcatt aatcccagcg catcggaacg gctgaccgca
     2341 tacgggttaa aggaagattc ggtctgcata attgccagaa tcagcgactc atcaacgcca
     2401 tatttccgtg acgcctggcg gaccatgccg agatatttgt gcgcacgttt atcaaggtgg
     2461 ttcggtacca tgttaatggt gacgctgtag atgatacgca gcccgttact gcggctttgc
     2521 agacggtttt tcagcagata atccgcgaag ttgcttgcgc gaccttccca gcgaatcggc
     2581 tgcccggtgt tgtccaccac ctgaccgtaa aggaaaggtt ctttcgaaat cgtaatatca
     2641 tcaacgtcgg aatagagatc gaccgaactc ggatcgtcac ccatcagcaa cgttttgata
     2701 attgcccggc gcaaatgcgc ggcaggttct gtcccggcga tagtttcgat agtaatcgta
     2761 ccgtcatcga agttgatgtg gctgcgggtc tgatattgat cggtgtattt cacgtagtcc
     2821 ttaggaccgg cgatcaccac ctctttgaat ccccagatgt tctcaatatt gtgggcaaat
     2881 tgccccatca gaatatcaaa accgttggta tctttgaccc aggcttcgtt ataggtatcg
     2941 ccttttttgg tcgtcgaaca ggagatgagc aacggcgcaa tcaaagccag cgcgagatat
     3001 tttttcatca ttccgggtgc gtgttgtgtt tgtttttatg caagttgccg gaggcgtgct
     3061 ccggcactgt ttttattttt tatcttccgg cgtatagccc tcgatatgca cctctttacc
     3121 ctcgaacagg aagttgacca tctcctgctc aagcagcttg cggtgctcgg cattcatcat
     3181 gttgagtttc ttttcattaa tcagcatggt ttgcttgtgc tgccactgcg cccaggcttc
     3241 tttggagatc tcgttataga tgcgttttcc cagctcgccg gggtacagct gaaaatcctg
     3301 accttctgct tcacgttgca ggaaagtaca aaaaatcgtt ctgctcataa atcatcctct
     3361 ttatcgactc acgcgctaaa ccggcgcgcc agtgcgtaac tgctgtaaca aacgctccac
     3421 gggagccgcc aggccaactg acggcggttg cgctaagtta taccagagcg cattgccttc
     3481 atccatgcag ccggtgaatg acgacacggg aagccacata ggcacaatat ctaagtggaa
     3541 atggctgaag gtatgccgaa acgcggtcag ttgcgtcagg ttatcggcag caatctgccg
     3601 ttgcgccagc cactgccgca aactttcttc gtcggcaaac tgcgggaaac agtataaacc
     3661 gccccacaat ccgctcggcg gacgctgcgc cagcaatact tcatcttcgt gctgtaacag
     3721 caaaaagtag ccggtgcgct ccggcagcgt ctgtttcggt tttttgcccg gataaagcga
     3781 ccagctatta ttggcggcgg caatacatcc gttttgtagc ggacagagcg aacatttcgg
     3841 cttcgagcgc gtacaaatca tcgcgcccaa atccatcatc gcctgattaa accgttccac
     3901 gccgaccgcg ggcgtcacct gctcgctcaa actccataat ttattctcga cctctttttt
     3961 cccaggccag ccgcttacag catagcagcg cgccagcacg cgtttgacgt taccgtcgag
     4021 aatcggaaag tgcttaccca gagaaagcga gagaatcgcg cctgcggtgg aacgcccgac
     4081 gcccggtaac gccgcgactt cttcaaaggt ttccgggaat ttaccgccgt gtaaggtcgc
     4141 cacttgttgt gccgctttat gcagattgcg cgcgcgggcg taatagccaa gcccggtcca
     4201 caagtggaga acttcgtcga gcggcgcatt ggcgagatcg gtcaccgtcg ggaagcgcgc
     4261 cataaagcgt tcaaaatagg ggataacggt cgcaacctga gtttgttgca acatcacttc
     4321 tgagagccat actttgtagg gcgtcttgtc aatttgccag ggcagcgttt ttcgcccgta
     4381 tttatcgtac cagtccagaa cctgggctga aaattgcgac gcttgcatgg tcaccgaatt
     4441 cactgttgtt gggggcaaga ttgcagcaca gcgacggcag ggtgtaaacc ggaactttcc
     4501 gcagccacgg ccttatcatg cttgcatccg gcaactaact ttggataatg cccgttttca
     4561 gaacactttc acaagcgact aaatctttat gaaaaacgac gtcatttcac cggaatttga
     4621 tgaaaacggc cgcccactgc gccgtatccg tagttttgtg cgccgccagg ggcgactgac
     4681 caaaggccag gaacatgcgc tggaaaacta ctggccggtg atgggcgttg agttcagcga
     4741 agatatgctg gatttccccg cgctttttgg ccgtgaagcg ccggtgacgc ttgagattgg
     4801 ttttggcatg ggggcgtcgc tggtggcaat ggctaaagat cgccctgagc aggacttcct
     4861 cggcattgaa gtgcattcac cgggcgttgg tgcgtgcctg gcttctgcgc atgaagaagg
     4921 tttaaacaac ctgcgagtga tgtgtcacga tgcggttgaa gtgctgcata aaatgattcc
     4981 tgacaattca ttgcgcatgg tgcagctctt tttccctgac ccgtggcaca aagcgcgcca
     5041 taataaacgc cgtatcgtac aggtgccgtt tgccgaactg gtaaaaagca aactgcagct
     5101 ggggggcgta ttccatatgg cgaccgactg ggaaccttat gcggaacata tgcttgaagt
     5161 gatgtcttct attgacggtt ataaaaacct gtcagagagc aatgattacg taccgcgtcc
     5221 ggcatcacgt ccggtgacga aatttgaaca acgtggtcat cgtcttggtc acggagtatg
     5281 ggacttaatg ttcgagaggg tgaaataatg gcaaagaacc gtagccgtcg tctgcgtaaa
     5341 aaaatgcaca tcgacgaatt ccaggaatta ggattttcgg tggcatggcg attcccggaa
     5401 ggtacatcgg aagaacagat tgataaaacc gttgatgatt ttattaacga ggttatcgaa
     5461 ccgaacaaac tggcctttga cggcagcggt tatctggcct gggaaggtct gatctgcatg
     5521 caggaaatcg gcaaatgcac cgaagaacat caggcgattg tgcgtaagtg gctggaagag
     5581 cgcaaactgg atgaggtacg caccagcgaa cttttcgacg tttggtggga ctaagaaagc
     5641 atacgggcga tgacaaatgc aaaactgcct gatgcgctac gcttatcagg cctggaaaga
     5701 tgcacgatcg agtaggcggg ataaggtgtt tacgccgcat ccggcatgga aaacgcgtac
     5761 tttgttatca atctggggcc agcaaatgct ggcctgattt tttcttgagg gaagactatg
     5821 atgcgcaaaa tgctgctggc ggcagcactt tcagtgacgg caatgaccgc tcacgccgac
     5881 taccagtgca gcgtcacgcc gcgtgacgat gtgattgtca gcccgcaaac cgtgcaggtg
     5941 aagggcgaaa acggcaatct ggtgatcacg ccagacggca acgtgatgta taacggtaag
     6001 caatattccc tgaatgccgc ccagcgcgag caggcgaagg attatcaggc tgaactacgc
     6061 agcacgctgc cgtggattga tgaaggcgcg aaaagccgcg tcgaaaaagc ccgtattgcg
     6121 ctggataaaa ttatcgttca ggagatgggc gaaagcagca aaatgcgcag ccgtctgacc
     6181 aaacttgatg cgcaactgaa agagcagatg aaccgcatta tcgaaacgcg cagcgatggc
     6241 ctgacgtttc actataaagc cattgatcag gttcgcgccg aaggccagca attagtgaat
     6301 caggcaatgg gtggaatttt acaggacagc attaatgaaa tgggcgcgaa agcggtgctg
     6361 aaaagcggcg gtaacccatt acagaatgtg ctgggaagcc tgggggggct gcaatcctca
     6421 atccaaaccg agtggaaaaa gcaggaaaaa gatttccagc agtttggcaa agatgtttgt
     6481 agccgcgttg tgactctgga agatagccgc aaagccctgg tcgggaattt aaaataatcc
     6541 tctattttaa gacggcataa tactttttta tgccgtttaa ttcttcgttt tgttacctgc
     6601 ctctaacttt gtagagctcc aaaatatatt cacgttgtaa attgtttaac ctcaaatttc
     6661 ccatacagag ctaagggata atgcgtagcg ttcacgtaac tggaggaatg aaatggagtt
     6721 tttcaaaaag acggcacttg ccgcactggt tatgggtttt agtggtgcag cattggcatt
     6781 acccaatatc accattttag caaccggcgg gaccattgcc ggtggtggtg actccgcaac
     6841 caaatctaac tacacagcgg gtaaagttgg cgtagaaaat ctggttaatg cggtgccgca
     6901 actaaaagac attgcgaacg ttaaaggcga gcaggtagtg aatatcggct cccaggacat
     6961 gaacgataat gtctggctga cactggcgaa aaaaattaac accgactgcg ataaaaccga
     7021 cggcttcgtc attacccacg gtaccgacac gatggaagaa accgcttact tcctcgacct
     7081 gacggtgaaa tgcgacaaac cggtggtgat ggtcggcgca atgcgcccgt ccacgtccat
     7141 gagcgcagac ggtccattca acctgtataa cgcggtagtg accgcagctg ataaagcatc
     7201 cgctaatcgt ggcgtgctgg tggtgatgaa cgacaccgta ctggacggtc gcgatgtaac
     7261 caaaaccaac accaccgacg tagcgacctt caagtctgtt aactacggtc ctctgggata
     7321 cattcacaac ggtaagattg actaccaacg taccccggca cgtaagcaca ccagcgatac
     7381 gccattcgat gtctctaagc tgaatgagct gccgaaagtc ggcatcgttt ataactacgc
     7441 taacgcatcc gatcttccgg ctaaagcact ggtagatgcg ggctatgatg gcatcgttag
     7501 cgctggtgtg ggtaatggta acctgtataa atccgtgttc gacaccctgg caaccgccgc
     7561 gaaaaacggc actgcagtag tgcgttcttc ccgcgtaccg acgggtgcta ccactcagga
     7621 tgctgaagtg gatgatgcga aatacggctt cgtcgcctct ggcacgctga acccgcaaaa
     7681 agcgcgcgtc ctgctgcagc tggctctgac gcaaaccaaa gatccgcagc agatccagca
     7741 gatcttcaat cagtactaat cacctcgctc cggtatcgtg ccggggcttt ttcacttcag
     7801 acttacgtcc attgccaatt ttcattaccc taatgataat caccggaata aattatttcg
     7861 cgtgaggttt ttcgggtgaa aaagcaatgg attgttggca cggcactgct tatgttgatg
     7921 actggtaatg cctgggcaga tggcgaaccg ccaactgaaa atatcttaaa agatcaattc
     7981 aaaaagcagt atcacggcat tctcaagctt gatgctatca ccttaaaaaa tcttgatgct
     8041 aagggtaatc aggccacctg gtcagcggaa ggcgatgtct cttccagtga cgatctctat
     8101 acctgggtcg gtcagttggc agattacgaa ctgctcgaac agacctggac gaaagataaa
     8161 ccggtaaaat tctcggcgat gttaaccagt aaaggaacgc ccgcgtctgg ctggtcggtg
     8221 aacttttact cttttcagtc ggcagccagc gatcgtgggc gggtggtcga cgatatcaaa
     8281 acgaataata aatatctgat cgtgaatagc gaagatttca attatcgctt tagtcagctt
     8341 gaatctgcgt tgaataccca gaagaactcg attcctgcgc tggaaaagga agtgaaagcg
     8401 cttgataagc aaatggtggc ggcgcagaaa gcagcggatg catattgggg aaaagatgca
     8461 aacggtaagc aaatgacccg cgaagaagcc tttaaaaaaa ttcaccaaca gcgtgatgag
     8521 tttaataaac agaacgatag cgaggcgttc gcggttaaat atgacaaaga ggtttatcaa
     8581 ccggcgattg cggcatgtca taaacagagt gaagagtgtt atgaagtgcc gattcagcag
     8641 aaacgagatt tcgatatcaa cgaacaacgg cgacagactt ttctgcaatc acaaaaactc
     8701 agccgtaaat tgcaggatga ctgggtaacg ctcgaaaaag ggcaatatcc gttaacgatg
     8761 aaagtttcag aaataaacag taaaaaagtc gcgattttga tgaaaattga cgatatcaac
     8821 caagctaatg aacgctggaa aaaagatacc gaacaactgc ggcgcaatgg ggtgattaag
     8881 taagtttgat atagtgcacg atttgtagca ggatgcggcg ttgaccccgc atccggcaat
     8941 caacgtctga tgcgacgctt gcgcgtctta tcagacctac aaccgttgcc acatgtaggc
     9001 tggataaggc gttcacgccg catccggcaa tacaagttta ctcagccaga aaaagctcca
     9061 gcagcgaatt taaaaacagc ttcccatgtt ccgttatctg ccagtaatcc gcacattctg
     9121 tgagataacc ctgggcaatc gcctcgtcta actgtgggcg aatcacatct tcgcaaagcc
     9181 cggtatacgc actaaactct gcgcgtggcg cggcctccag caagcgaaag cggttcataa
     9241 agaactcaaa cggcttatct gcggcttcga catcacgctg gctttccaga taccttcctt
     9301 gcataaaacc acgaggatga cgcgttttag tggtacgcag aatgcgccca tccgggaagg
     9361 tgactttgcc gtgcgcgccg cagccaatac cgatgtagtc accaaatcgc cagtagttga
     9421 gattgtgctg gcactgataa ccgggtttgg cgtaagcgga agtttcatat tgctgataac
     9481 ccgctgcggt taataactga tgcccctgtt cgaaaatatc ccacagcgcg tcatcgtccg
     9541 gcagcaccgg tggtcgcgaa ccaaacagcg tattgggttc gatggtcagt tgataccagg
     9601 aaagatgcgg cggattcagt tcaatggcct ggcgtagatc gccaagcgcc tcttccagtg
     9661 attgatccgg tagtccatgc atcaaatcaa ggttaaagct acgtaaccct aaaccgctcg
     9721 ccagctttgc cgctcgtttc gcttcttgcg ggccatgaat gcgcccaagt cgtttcagct
     9781 tttcttcgct aaaactctgc acaccaatag agatgcggtt cacaccagca cgctgataat
     9841 cgacaaagcg atcggcttct accgtaccag ggttcgcttc catagtaatt tctgcatccg
     9901 ctgccagcgg caaacgcgca cgcacgccgt ccagcagcgt ttgcatcgcc gggccggaaa
     9961 gcaggctcgg cgtaccaccg ccaataaaga ttgtctttac ttcacggccc tgagcgtaag
    10021 ccacatcatt gtccagatcg caaagcagat gctgaacata atcgtcgtgc ggcacttctc
    10081 ctttcaacgc gtgagagttg aaatcgcagt acgggcattt ctgcacgcac cacgggatgt
    10141 gaatgtagag actcagcggc ggtaatttaa ccattacgta aagcgtccag cagcagtttc
    10201 aacgcctgac cacggtggga aatggcgctc ttttcttcgc gggtcagttc ggcggcggtt
    10261 ttcccttcgg aaggtacgaa gaagattgga tcataaccaa agccaccagt gcccgctggt
    10321 tcgcgagtaa tcacgcccgg ccagctgccg tggcatacca gcggagtcgg atcttccgcg
    10381 tgacgcagat ataccagcac gcagtggaaa cgtgcctgac gttggtcgtc cggtacgtct
    10441 ttcagtgttt ccaacagttt ttgcagattc ttttgatcgg tcgcgtcttc accggaataa
    10501 cgcgcggagt aaatacccgg cgcgccaccc agcgcatcta ccgccagacc agagtcgtcg
    10561 gcaattgccg gtaaaccggt cacttttgcc gcatggcgcg ctttcagaat cgcgttttcg
    10621 ataaaggtta ggccggtttc ttcagcggaa tcaacgccga ggtctgtttg tgccacgata
    10681 tcaagaccaa agtcgctaag cagcgacgcc agctcacgca ctttaccggc attgccggtt
    10741 gcgaggacaa ctttttgcat aggataccta attaattaac gccgcgattt ctggcgggat
    10801 ttgttgcgga ttaatgattt taatttgttt gtggcggcca agttcgcctt tttcaatcac
    10861 cacctggctt ttggcaaccc ggaattgctt accgagaaac ttcaccagat gactgttggc
    10921 ctggccgtca actggcggcg cggtaatggc gactttaact tcgtcgccat gtaaaccgac
    10981 aatagaatca cggctggctt tcggctgaat atagagccgt aaaaccagac cgtcatcatt
    11041 aactgttacg gcattcataa cgccatccac atccccggca gcaggatgtt tccggttgcc
    11101 tgtaatactt ctgcgacacc catattgatg acatacagca gcagaacgag gatcatcggc
    11161 gagaaatcaa tcccacccat tgccggtagc aagcggcgaa tcgggcgcag cagcggatcg
    11221 gccagctgaa tcagcacgta ttcaatcggg ctacgaccct ggcttaccca gctcataatc
    11281 gccatcacca gcaggaccca gaaaatcagc aagccgatgg ttttcagcag aatcagtaaa
    11341 ccggcaatcc agatgattgg caggaaggtc accactttaa acagcacaat ggctttgata
    11401 aaactgagaa tataggcaac cagcagcgag gcgctgtcaa tgggacccat tgccggaata
    11461 acgcggcgca gtggcccgat aattggctgc gttaccttca ctacaaactg tgagaagggg
    11521 ttgtaaaaat cacaatgagc ccactgcatc cagatgcgta ataacagcac catggtatac
    11581 agctcaatga ccgttgaaag caggaaagtc aacgtattca tggcgttcct ttaattcctt
    11641 attttttaga gtaatcacgc gcaccaaaaa ttgcagtgcc gatacgaacc atcgtgctac
    11701 ctgccgcaat ggcggcttcc atatcgtccg acattcccag agagagcgtg tcgatatgcg
    11761 ggtagcgcgt tttcagtccg gcaaatgcta cagccatttg gcgtgcaact tcaaactgcc
    11821 ttacatattc tgactcaggc gcagggattg ccatcagccc gcgcagacgt aaacgcggta
    11881 gttcagcgac cgccgctgcc agctcgtcca gttctgccag ttgaatcccg gacttactgt
    11941 tttcatcact aatattaatt tgaatcagta cgttaagagg gggaagttct gccgggcgct
    12001 gatcgttgag gcgggtagca atgcgcaaac ggtcgatggt atgacaccag tcgaaatgct
    12061 ctgccaccag gcggctttta ttagactgca acgggccaat aaaatgccat tctaatcctg
    12121 ttacgcccag ttcctgaaag tggcgaattt tatctacccc ttcctgaacg tagttttcac
    12181 caaattgacg ctgcccggca tcaatggctt ctgcgatggc gctcgcaggt tttgttttac
    12241 tgactgcaag cagcgtaatt tcttctggag aacggccgca acgcgttgca gccgctgaga
    12301 ttttgtcccg gacctgtgcc aggttatgcg caatatcgtt cattttccga ggatcttagt
    12361 atgaatatgg aagaaattgt ggcccttagt gtaaagcata acgtctcgga tctacacctg
    12421 tgcagcgcct ggcccgcacg atggcgcatt cgcgggctaa tggaagctgc gccgtttgat
    12481 gcgctggacg tcgaagagct actgcgggag tggctggatg acgatcagcg ggcaatattg
    12541 ctggaaaatg gccagctgga ttttgccgtg tcgctggcgg aaaaccagcg attgcgtggc
    12601 agcgcattcg cgcaacggca tggcatttcg ctggcgttac ggctgttacc ttcgcactgc
    12661 ccgcagctcg aacagcttgg cgcaccaacg gtattgccgg aattactcaa gagcgagaat
    12721 ggcctgattc tggtgacggg ggcgacgggg agcggcaaat ctaccacgct ggcggcgatg
    12781 gttggctatc tcaatcaaca tgccgatgcg catattctga cgctggaaga tcctgttgaa
    12841 tatatctatg ccagccagcg atgtttgatc cagcagcggg aaattggttt gcactgtatg
    12901 acgttcgcat cgggattgcg ggccgcattg cgggaagatc ctgatgtgat tttgctcgga
    12961 gagctgcgtg acagcgagac aatccgtctg gcactgacgg cggcagaaac cgggcatttg
    13021 gtgctagcaa cattacatac gcgtggtgcc gcgcaggcag ttgagcgact ggtggattca
    13081 tttccggcgc aggaaaaaga tcccgtacgt aatcaactgg caggtagttt acgggccgtg
    13141 ttgtcacaaa agctggaagt ggataaacag gaaggacgcg tggcgctgtt tgaattattg
    13201 attaacactc ccgcggtggg gaatttgatt cgcgaaggga aaacccacca gttaccgcat
    13261 gttattcaaa ccgggcagca ggtggggatg ataacgtttc agcagagtta tcagcagcgg
    13321 gtgggggaag ggcgtttgtg acgttgccat gcccgatgcg caagtttata gggcctataa
    13381 aggcaataaa tgtctgatgc gactctaacg cgtcttatca gacctacagc cgctgccaga
    13441 tgtgtgctgg ataaggcgtt cacgccgcat ccggcaagat ggcggtaacg actatccgcc
    13501 aggcttttag atcgccttaa tatccctgct cgaaatagct ttcgagaata ataaccgcag
    13561 aggcagagtc gactttgcct ttgttgagcg cccgatagcc gccctgttca aacagaccgg
    13621 aacgggcttc cacggtgcta agacgttcgt catggagctt tacttcaaca ccgaaacgac
    13681 catgaatacg gttggcaaat ttacgcgctc tggcagtcaa tggttgctcg gtgccgtcca
    13741 tattcagcgg caaaccgacg atgatttcgt ccggctgcca ctctttcagt aaacgttcga
    13801 tgaggttcca gtccggcgta ccgtcctgtg ctttaattgc aggcaaaggg cgagcagtgc
    13861 cggtaatgcg ttggccgacc gctacgccaa tgcttttggt gccgaagtcg aaggcgagta
    13921 aggttccact catcaggcgt gccctgccac accaggcatg gtgagaatat ccacaccaat
    13981 cagttttgcc gcctcgcgcc agcggtcggc aatcggcgtt ttgaacagaa tattcagatc
    14041 cgccgaggcc gttagccacg cgttatcgag aatttcttgt tccagttgac ctttttccca
    14101 ggaggcatag cccagagcca ccaatacgtc agacggttgt ttatcggtgc cgagcgtttc
    14161 cagcacatcg cgggaagtgg tcatcaccgt gttgtctgaa atgcgaatgc tggaagcaaa
    14221 attggagggc ggagtatgca aaataaaccc gcgatcttca gccagtgggc cgccgagcat
    14281 aaccggttta tccagacgga ttgattcatc acgcggctcc ggcgtgatct tcagcttttc
    14341 cagaatccct tcaattttga gattttccag cggcttgttg acgatgatcc ccattgcacc
    14401 attggtatta tgttcgcaaa tgtagaccac ggaacgacgg aaaatcggat cctggagagc
    14461 aggcatggca ataagaaagt gatgctgtaa attcattgtc agaggttctg tttcctggtt
    14521 caaaaaagca acagcgccca gtatgcgtgg aaagaagggc gctgtcactc agagtctcaa
    14581 cgagatcctt ctcgctaagg tgggttactg ctgctgtaaa cgtgcttcga tggcatccat
    14641 taacattccg gtgatcgaca ccggaaactc tgcttcaatc tcacgaatac aggttgggct
    14701 ggtgacgtta atttcagtca gacggtcgcc gatgatatcc agaccaacaa aaatcagccc
    14761 tttttctttc agcgtcggcc cgatctgacg ggcgattttc cagtcacttt ccgtcagcgg
    14821 ccgaggttca ccgcgaccac cggcagccag attgccacgg gtttcgcccc cctgcggaat
    14881 acgcgccagg cagtacggta ccggctcgcc atccaccacc agcacgcgtt tgtcgccatc
    14941 tttaatggct ggcaggtaat tttgcgccat gcagtagcga gtgccatgct cagtcagggt
    15001 ttcggcaatc acgccgaggt ttggatcgcc ttctttcacg cggaaaatcg acgcgccgcc
    15061 cataccgtcc agcggcttaa gaatgatgtc gctgtgtttc tcccagaacg cttttagctg
    15121 cgctttattg cgcgtaacca gcgtttctgg cgttaagtca gagaaccagg cggtaaacag
    15181 tttctcgtta cagtcgcgca ggctctgcgg cttgttaacg atcagcgtcc ctttctcttc
    15241 ggcacgttcc agaatatagg tcgcgtagat aaactcggta tcaaacggcg ggtctttacg
    15301 catcaggagc acatcgagat cggccagcgg cagatcctgt tcaccgacga acgaaaacca
    15361 ctcttcgtag ttctgcttca cgttcagcgt gcgggtatgg gcgcgagctt cgccattgat
    15421 cagatacaga tcgcccatct ccatatagtg aagttcgtaa ccacgacgct gtgcttccag
    15481 caacatagcg aaactggaat ctttcttgat gttgatgttt gcgatggggt ccatcacgat
    15541 gccgagcttg atcattattc ttctccgtta gcccaaatcg ccaaatcgta cttgtagcgc
    15601 ggtaatggcg gtgagcgcag ttgtctctgt acgcaaaacg cgaggtccca acaggatatc
    15661 agtaaattga tagcgggcag tcatggcaat ttcatctgcc gataaaccac cttccgggcc
    15721 aatcagcagg cggacgcgtt caaccggtaa cggcaacgta ttgatgctgt tactggcgcg
    15781 cgggtgaaga ttcagtttca gtccttcatc ctgctctgca caccaggctt ccagatccat
    15841 cgctggacgg atttccggca cccggttacg accacactgc tcacaggcag caattgcaat
    15901 cttctgccac tgctggagct tcttgttcag acgttcacta tccagtttaa cgccgcagcg
    15961 ctcagaaaaa agtggcgtaa tgaggcttac accgagttcg atcgatttct ggatcgtaaa
    16021 ttccattttt tcaccacgcg acatcacctg accgaggtga atatgcagcg gagattcgcg
    16081 atcgtcgatc ttgccttcca gcaccttcac ttccacgctt tttttgctgg cgctggtaat
    16141 ttcggcgtca aagacctggt tgctaccgtc aaacaattgc aacgcctgcc ccggccccat
    16201 gcgcagtacg cgcccgatat ggttggcggc atcttcgcaa agcgcgatgt gagaatggct
    16261 ggtcagtggt tcaggatgat aaatgcgggg gatacgcata gttaaaaatc cgcgtcgtct
    16321 ccccacgcgg ttgtacgcgt ggggtagggg ttaacaaaaa gagtcccgct agtgtaggtt
    16381 agctctttcg cgcctggcaa gcgcgttgca catacgggtt atgattgcct tgcaccttcg
    16441 cgatgcgttc atcgcgctcg cactcccagt cggtaaccgg atacatcttg ttccatgcgt
    16501 tgaacagctg cgtttgctgg cgagagagtg tcaggttgta ttggtcgcgc atatagaagt
    16561 aggtgcgcgc aatggcaccg cgtgcacgcg ctggtggttc ggcagctttt tctttgaaat
    16621 cgaccttcat ggcgcattga ccgtactggc cttcgccgcc attccactgg ctgtacataa
    16681 agttgccgcg atcgccattc acctcaccga ctgacggctg caggttatgc atatcgcttt
    16741 ccatcttgcg atagaccgga tctttagcgc agtttttacg tccaccgtcc tgccagcact
    16801 ggcgctggtg accgaactgc caggcgggaa cgacgtgttc ccactctacg cggctggctc
    16861 ggttttcatt tttgcgcacc tgatagccgc acgattgcag atcaacaacg ccttttttgc
    16921 cctgccagtt aattttacat ccgcaataaa acgtaccggg cgcgtcagcg tggactttta
    16981 ccgccgcggc tttcgcctga gaaaaactat tgataccttc ggccaacgcc gggccggaaa
    17041 atgctgcgct cagtaccacc gcagcaatag acaaataacg gtacatcact tactccgtgt
    17101 taaaacgagc cagcaacgta gcgaaagttg ttttggtatg caatcagcca gatcaggaaa
    17161 gttcctgata gttcagatgg ttattttgcg accagttgtt cgccgcagtg aacacagcga
    17221 tagacggctt cgccacgaac tacgcgatta tggcggcgta cggtaagctg atgctcctgg
    17281 cacttgcagc ggtaggggaa ggtgttgcga cgcacggatt gcagttcgaa ctgatgcgta
    17341 cgacgggcgg gaacacccag cacgttttcc atcatccact tccactcttt gccatgtggt
    17401 gctacgcgcc cgaaatgttt ccataccagc aaatgtgcca gttcgtgcgg caccacttct
    17461 tcaataaagg cttcactgtt ttccaacagc aaaacgggat tgaggcggat ttcatagctt
    17521 tccagccagg ctgttccggc ggaggtgccg cgctgggtat aagagagttt tggctccggg
    17581 tagttacgcc ccaatttcag gttagcctgg gcgagttttt cccgcaggcg acgcataacg
    17641 gcctgttgga tggcgatagg gagacgggat gttttcatag cggcagagga tagagcgaag
    17701 aaaagatgac tgcaagaggt ggcttcctcc gcgatgggag gaagcttggg gagattaatc
    17761 gtgagcgcct atttcgcgca gtttacgacc tttcatcaga ttacgttcaa tatgttccag
    17821 cgaaacgtgt ttggtttccg gtaccagcca caatgtcagc aggataaaca gtacgttcag
    17881 agccgcatac acccagaagg tgttggcgtt acccagtgtg ttgagcatgg tcaggaacgt
    17941 tgcgccaacg atcatgttgg caatccagtt ggtggcggta gagcaggtga tgccaaaatc
    18001 gcggcctttc agcggctgaa tttcggagca cagtacccaa atcagcggac cggcactcat
    18061 ggcaaaaccg acaataaaca tcagcagcat ggcgatggcg aaatactgcg ctgacggaga
    18121 gtgaataccg atatgcatca ttgtaccgag tacgcccatg ccagcagcca tcaccaggaa
    18181 gcccagcgtt agcgttggtt tacgtcccca gcggtcaaca aggccgattg cgataaaggt
    18241 ggcaagtacg ttggtcaggc cgacaatcac tgtcccccac atttgctcgg tagtgttggt
    18301 ataacccgcc agttcgaaga ttttcggcgc gtaatacatg atgacgttca tcccggtgaa
    18361 ttgctgcatt acctgtaaca gtacgccaag gaacaccgcg cggcggaagt tgctattctc
    18421 tttaaacagc gcccagccac tctgtttaac ctgcaaactt tcacggattt catccagttc
    18481 gcgtttcgct tccgcgctgg tgtcacgcag gcgtagcagc acgcgttcgg catcaacaaa
    18541 acggcgtttg gcggcaaacc aacgtgggct gtctggcagg aagaagacac caatcagcag
    18601 caaaattgcc gggatgataa tcacacccag catccagcgc catgcaccgg tgtagctgaa
    18661 ggcggtatca gaaagataag caccgaggat cccgatagtg atcatcaact gatacatcga
    18721 gatcatactg ccacgaattt tttccggcgc aatttcagag aggtacagcg gtgcggtata
    18781 agaggccaca cccaccgcca gccccagtag aacgcgggaa agaatcagta cttcaacgtt
    18841 tggcgcagcc gcagagaaca gcgaaccggc aacaaacaaa attgcgccga tcatcaggct
    18901 ctttttgcgc ccgagtttaa aggagagcca gccgctgccc accgcaccga ctgccgcacc
    18961 gaacatcatg gagcttacga cccattcttg cgtgtgcgaa gtaatctgga attcatctgc
    19021 aataaacggc agtgcgccag caattacacc gatatccagg ccaaagagta atcccgccag
    19081 agcggcaagg aagcagacga aaaacgtcat tgccttgttt gaccgcccct gttttttagc
    19141 gtcaggcatg atgccctcca atatggttat tttttattgt gaattaagat aggtgagtac
    19201 gacgtaaaaa gatgtgaagc aaatcacatc agtgtaatcg cttacactaa catttatctt
    19261 agttatggtt taagtgcatg aaaataattg agttatatca tcatagatta aacgctgtta
    19321 tctgcaatta agactttact gaaaagaaat gtaacaactg tgaaaactga ataataatat
    19381 gaaaatatta caaatatttg gctggtgtta ttggtgtaat cggtttcagt agtgatgata
    19441 atttgcgata aaacgtgttg aggaagaatg atgttattgt gcgggcagct ttttgccgga
    19501 tgcggcgtga atgcctatcc accgcggtga ggtaaaagaa aaaggccagc gcgaggctgg
    19561 cctttgaaag caggtgaaga aagattactt cagaccggca gcatcgcgca gcagctgcgc
    19621 tttgtcggtt ttttcccacg ggaaatgttc acgaccaaag tgaccgtatg ctgcggtttc
    19681 tttgtagatc gggtgcagca gatccagcat ctgaatcaga ccgtatgggc gcaggtcgaa
    19741 gaactcacgt accagcagag tcagttgttc agaaggcact ttctcagtac cgaaagtttc
    19801 taccatgatg gaggtcggtt cagccacgcc gattgcgtag gaaacctgaa tttcacaacg
    19861 atcggccagg ccagcagcaa cgatgttttt cgcgacataa cgtgctgcgt aggctgcgga
    19921 acggtccact tttgatggat ctttaccaga gaatgctccg ccaccgtgac gtgccatgcc
    19981 gccgtaggta tcaacgataa ttttacgacc agtcagaccg cagtccccca tcgggccacc
    20041 gataacaaaa cgaccggtcg ggttgatgaa gaatgtggtg gcagaagtca gccattcagc
    20101 gggcagaatt ggcttgatga tctcttccat taccgcttct tgcagcgatt tctggtcgat
    20161 ctcttcagag tgctgagtgg aaagcacgac agcatcaata ccaacgattt tgccgtcgtc
    20221 atactggaaa gtcacctggc ttttcgcgtc cgggcgcagc cacggcagag tgccgttttt
    20281 acgcacttca gcctgacgct gtaccagacg gtgtgcatag gtgataggtg ctggcatcag
    20341 cacgtcggtt tcattagttg cgtagccaaa catcagaccc tggtcacccg cgccctgttc
    20401 cagcggatcg gcacggtcaa cgccctggtt gatgtcagga gactgtttgc cgatagcgct
    20461 cagaaccgca caggagttag cgtcaaagcc catgtcggaa tgcacatagc caatttcgcg
    20521 aacggtgtta cgagtgatct cttcgatgtc tacccaggcg ctggtggtga tttcgccgcc
    20581 aactaaaacc atgccggttt ttacgtaggt ttcgcaagca acgcgtgctt tcggatcctg
    20641 ttcgaggatc gcgtctaaaa cggcatcaga gatttggtca gcaattttgt caggatgccc
    20701 ttcagagacg gactcggacg taaaaaggtg ttttgccata tttaatatca cctaaagaga
    20761 atttggttag ctcaaactgt tgtgtggatt ttctgtggta gcggatccta ccacgactct
    20821 gcaggttaaa aacactggca gtctgagtgt taatcggtat ggatggatta acatctagat
    20881 ggctatttta ggtcaattct tcacccgatt tccacttttt tttgaatcgt gtctcattct
    20941 gttaaaaacg tggctggaaa ttttttctga caatgccggc attctgcgta tttatatttt
    21001 gcaattttct gccattgtgg ggtataaaac gcggcgcgcg gcttaaataa aaagcacacg
    21061 acgtttcttt cgtgttgcca cttccagccg ggttgaaatc agagttttgg cttgtgggtt
    21121 cgtcttaaca ggcggccgtg gaggtgatac gaaataatga accgtagtct gctgcttaac
    21181 ctgtctcacc gttctggtga agattcgttc cccgcactct gcatctctgc tttgcatacc
    21241 tgccgatgtt atacccatct cggcgcttct caggattcaa gagctggtta cagttactga
    21301 ggactgaaca agggcgctct tgtaaaaaca agagttttct cgtggtttcg ccgaactgtc
    21361 acacttacgt tcggttatgt gcttaataat gttatgaaaa agaaaccggt tgcgcagttg
    21421 gagcgtcagc attcactgct ggaaaatcca tgtgcttatg ggttgttatc gcagttccag
    21481 gctgcgatag tcgttaactg ttttacactt aataaaataa tttgaggttc gctatgtctg
    21541 acgacatgtc tatgggtttg ccttcgtcag cgggcgaaca cggtgtacta cgctccatgc
    21601 aggaggttgc aatgagctcc caggaagcca gcaagatgct gcgtacttac aatattgcct
    21661 ggtggggcaa taactactat gacgttaacg agctgggcca catcagcgtg tgcccggacc
    21721 cggacgtccc ggaagctcgc gtcgatctcg cgcagttagt gaaaactcgt gaagcacagg
    21781 gtcagcgtct gcctgcactg ttctgtttcc cacagatcct gcagcaccgt ttgcgttcca
    21841 ttaacgccgc gttcaaacgt gcgagggaat cctacggcta taacggcgat tacttccttg
    21901 tttatccgat caaagttaac cagcaccgcc gcgtgattga gtccctgatt cattcgggcg
    21961 aaccgctggg tctggaagcc ggttccaaag ccgagttgat ggcagtgctg gcacatgctg
    22021 gcatgacccg tagcgtcatc gtctgcaacg gttataaaga ccgcgaatat atccgcctgg
    22081 cattaattgg cgagaagatg gggcacaagg tctatctggt cattgagaag atgtcagaaa
    22141 tcgccattgt gctggatgaa gcagaacgtc tgaatgtcgt tcctcgtctg ggcgtgcgtg
    22201 cacgtctggc ttcgcagggc tcgggtaaat ggcagtcttc cggcggggaa aaatcgaagt
    22261 tcggcctggc tgcgactcag gtactgcaac tggttgaaac gctgcgtgaa gctgggcgtc
    22321 tcgacagcct gcaactactg cacttccacc tcggttcgca gatggcgaat attcgcgata
    22381 tcgccacggg cgttcgtgaa tccgcgcgtt tctatgtgga actgcacaag ctgggcgtca
    22441 atattcagtg cttcgacgtc ggcggcggtc tgggcgtgga ctatgaaggc acccgttcgc
    22501 agtctgactg ctccgtaaac tacggcctca atgaatatgc caacaacatc atctgggcga
    22561 ttggtgatgc gtgtgaagaa aacggtctgc cgcatccgac ggtaatcacc gaatcgggtc
    22621 gtgcggtgac tgcgcatcac accgtgctgg tgtctaatat catcggcgtg gaacgtaacg
    22681 aatacacggt gccgaccgcg cctgcagaag atgcgccgcg cgcgctgcaa agcatgtggg
    22741 aaacctggca ggagatgcac gaaccgggaa ctcgccgttc tctgcgtgaa tggttacacg
    22801 acagtcagat ggatctgcac gacattcata tcggctactc ttccggcacc tttagcctgc
    22861 aagaacgtgc atgggcagaa caactctatc tgagcatgtg ccatgaagtg cagaagcaac
    22921 tggatccgca aaaccgtgcg catcgtccga taatcgacga actgcaggaa cgtatggcgg
    22981 acaaaatgta cgtcaatttc tcgctgttcc agtcaatgcc ggacgcatgg gggatcgacc
    23041 agttgttccc ggttctgccg ctggaagggc tggatcaagt gccggaacgt cgcgctgtgc
    23101 tgctggatat tacctgtgac tctgacggtg ctatcgacca ctatattgat ggtgatggta
    23161 ttgccacgac aatgccaatg ccggagtacg atccagagaa tccgccgatg ctcggtttct
    23221 ttatggtcgg cgcatatcag gagatcctcg gcaacatgca caacctgttc ggtgataccg
    23281 aagcggttga cgtgttcgtc ttccctgacg gtagtgtaga agtggaactg tctgacgaag
    23341 gcgataccgt tgcggatatg ctgcaatatg tgcagctcga tccgaaaacg ctgttaactc
    23401 agttccgcga tcaagtgaag aaaaccgatc ttgatgctga actgcaacaa cagttccttg
    23461 aagagttcga ggcaggtttg tacggttata cttatctgga agatgagtaa gtccgtatta
    23521 cttgaatccg cttaatttag cggtgataat ccgccacaat ttattgtgac aaatccaacc
    23581 cttcctcgtc gggcctaacg acgcggaagg gtttttttat atcgactttg taataggagt
    23641 ccatccatga gcaccttagg tcatcaatac gataactcac tggtttccaa cgcctttggt
    23701 tttttacgcc tgccgatgaa cttccagccg tatgacagcg atgctgactg ggtgattact
    23761 ggtgtgccgt tcgatatggc cacttctggt cgtgcggggg gacgccacgg tccggcagcg
    23821 atccgtcagg tttcgacgaa tcttgcctgg gaacacaatc gcttcccgtg gaatttcgac
    23881 atgcgtgagc gcctgaacgt cgtggactgc ggcgatctgg tatatgcctt tggcgatgcc
    23941 cgtgagatga gcgaaaaact gcaggcacac gccgagaagc tgctggctgc cggtaagcgt
    24001 atgctctctt tcggtggtga tcactttgtt acgctgccgc tgctgcgtgc tcatgcgaag
    24061 catttcggca aaatggcgct ggtacacttt gacgcccaca ccgataccta cgcgaacggt
    24121 tgtgaatttg accacggcac catgttctat accgcgccga aagaaggtct gatcgacccg
    24181 aatcattccg tgcagattgg tattcgtacc gagtttgata aagacaacgg ttttaccgtg
    24241 ctggacgcct gccaggtgaa cgatcgcagc gtggatgacg ttatcgccca agtgaaacag
    24301 attgtgggtg atatgccggt ttacctgacc tttgatatcg actgcctaga tcctgctttc
    24361 gcgccgggaa ccggtacgcc agtgattggc ggcctgacct ccgatcgcgc cattaaactg
    24421 gtacgcggcc tgaaagatct caacattgtt gggatggacg tagtggaagt ggctccggca
    24481 tacgatcagt cggaaatcac cgctctggct gcggcgacgc tggcgctgga gatgctgtat
    24541 attcaggcgg cgaaaaaggg cgagtaagca ccagatgcga tgcgcacggg taaaacgtgc
    24601 cattaatgtc ggatgcggcg tgaacgcctt atccgaccta cgttcggcac ccgtaggccg
    24661 gataagatgc gccagcatcg catccggcaa tgcgcacaag gtaacaaatg tgccattaat
    24721 gtcagatgcg gcgtgaacgc cttatctgac ctacgttcga caccaccagg ctttacttaa
    24781 tcccatccgc gctcatgcga tcgcgaatat gctgggcgcg ttcggcggat gccggatggt
    24841 cgtcaaacat tgagctttgg cggccttctt ccagtttcgc cagtttttca aagctggtgg
    24901 caagacctgc cgggctgatg ccgcgttggc gcagaagatc gtaagaataa tcatcggctt
    24961 ctgcttcctg gcgctgggag aattgcgaat tgactaattt ctcgcccaga tcaccaagtt
    25021 gtgattgaga taaactgccg acaatcccgc ccgcagaggc cgcagctact cgcacggcat
    25081 ttgtaccaag cgccacctgc atccctttct tcacatggcc taacgccacg tgccccatct
    25141 cgtgaccgat caccgcttcg acttcgttat ccgtcatcat atccatcagc ccgctataga
    25201 cgcggataca gccgttagcc attgcaaagg cgttcacatc cttcgccata tacactttgt
    25261 aattcaccgg ctgaccgttg atattgttgc ctagcgcatt ggcaatagtt gtcagacgtt
    25321 tagcgtattc gctattggct ggcgcaatcg tcgccttgct gtccatctcc tgacatgcct
    25381 gatcgctcag ggttttcacc tgcgcatcac tcaaactgta agcctgaaaa gcttccgctc
    25441 ctgatgagag cagtccgttg gagtccatat tctggcaacc agtcagtacc gttgccacgc
    25501 tcattgctac caataaggcg cgaattttca tgttttctct tccgcacaag gtcaggatta
    25561 ttctaaaaat gcgccgtttg caggtgaatc gacgctcagt ctcagtataa ggaaaagcgc
    25621 agcggacggg cgagtagatt gcgcaacatg cgagcatgat ccagagattt ctgaagcggc
    25681 aaaaggatgt tccatgtaca tgacgcgcgg cttgcggtaa attgttggca aattttccgg
    25741 cgtagcccaa aacgcgctgt cgtcaagtcg ttaagggcgt gcccttcatc atccgatctg
    25801 gagtcaaaat gtcctcacgt aaagagcttg ccaatgctat tcgtgcgctg agcatggacg
    25861 cagtacagaa agccaaatcc ggtcacccgg gtgcccctat gggtatggct gacattgccg
    25921 aagtcctgtg gcgtgatttc ctgaaacaca acccgcagaa tccgtcctgg gctgaccgtg
    25981 accgcttcgt gctgtccaac ggccacggct ccatgctgat ctacagcctg ctgcacctca
    26041 ccggttacga tctgccgatg gaagaactga aaaacttccg tcagctgcac tctaaaactc
    26101 cgggccaccc ggaagtgggt tacaccgctg gtgtggaaac caccaccggt ccgctgggtc
    26161 agggtattgc caacgcagtc ggtatggcga ttgcagaaaa aacgctggcg gcgcagttta
    26221 accgtccggg ccacgacatt gtcgaccact acacctacgc cttcatgggc gacggctgca
    26281 tgatggaagg catctcccac gaagtttgct ctctggcggg tacgctgaag ctgggtaaac
    26341 tgattgcgtt ctacgatgac aacggtatct ctattgatgg tcacgttgaa ggctggttca
    26401 ccgacgacac cgcaatgcgt ttcgaagctt acggctggca cgttattcgc gacatcgacg
    26461 gtcatgacgc ggcatccatc aaacgcgcag tagaagaagc gcgcgcagtg actgacaaac
    26521 cgtccctgct gatgtgcaaa accatcatcg gtttcggttc cccgaacaaa gccggtactc
    26581 acgactccca cggtgcgccg ctgggcgacg ctgaaattgc cctgacccgc gaacagctgg
    26641 gctggaaata tgcaccgttc gaaatcccgt ctgaaatcta tgctcagtgg gatgcgaaag
    26701 aagcaggcca ggcgaaagaa tccgcatgga acgagaaatt cgctgcttac gcgaaagctt
    26761 atccgcagga agccgctgaa tttacccgcc gtatgaaagg cgaaatgccg tctgacttcg
    26821 acgcgaaagc aaaagagttc attgctaaac tgcaggctaa cccggcgaaa atcgccagcc
    26881 gtaaagcgtc tcagaatgct atcgaagctt tcggtccgct gttgccggaa ttcctcggcg
    26941 gttctgctga cctggcaccg tctaacctga ccctgtggtc tggttctaaa gcaatcaacg
    27001 aagatgctgc gggtaactac atccactacg gtgttcgcga gttcggtatg accgcgattg
    27061 ctaacggtat ctccctgcac ggtggtttcc tgccgtacac ctccaccttc ctgatgttcg
    27121 tggaatacgc acgtaacgcc gtacgtatgg ctgcgctgat gaaacagcgt caggtgatgg
    27181 tttacaccca cgactccatc ggtctgggcg aagatggccc gactcaccag ccggtagagc
    27241 aggtcgcttc tctgcgcgta accccgaaca tgtctacatg gcgtccgtgt gaccaggttg
    27301 aatccgcggt cgcgtggaaa tacggtgttg agcgtcagga cggcccgacc gcactgatcc
    27361 tctcccgtca gaacctggcg cagcaggaac gaactgaaga gcaactggca aacatcgcgc
    27421 gcggtggtta tgtgctgaaa gactgcgccg gtcagccgga actgattttc atcgctaccg
    27481 gttcagaagt tgaactggct gttgctgcct acgaaaaact gactgccgaa ggcgtgaaag
    27541 cgcgcgtggt gtccatgccg tctaccgacg catttgacaa gcaggatgct gcttaccgtg
    27601 aatccgtact gccgaaagcg gttactgcac gcgttgcggt agaagcgggt attgctgact
    27661 actggtacaa gtatgttggc ctgaatggcg ctatcatcgg tatgaccacc ttcggtgagt
    27721 cagctccggc agagttgctg ttcgaagagt tcggcttcac cgtcgacaac gtcgttgcga
    27781 aagcaaaaga actgctgtaa ttagcatttc gggtaaaaag gtcgcttcgg cgaccttttt
    27841 tattaccttg atatgtccgt ttgcggacaa gcaatagata aagcgtgttg cagatcacaa
    27901 atatttatat gcaataaata tcaattatgt aatatgcatc acgatatgcg tattgacatt
    27961 tgttgttata tctataactc aatgttatat aagaaattaa taattcactg ttttcaaaac
    28021 accggtttcc ctgctcaatt gctttcatta aaccgcacga gtattttatt tttaccgccg
    28081 gacggtaccc taaaaataaa ataaggataa tttatgcggc ttagtgacta ttttccagaa
    28141 tcatcaatct cagttataca ttcagcaaaa gattggcagg aagctatcga tttctcgatg
    28201 gtatcattgc tggataaaaa ctatatcagc gagaattaca ttcaggcaat taaagattcc
    28261 accattaaca atggccctta ttatattctc gcaccaggcg tggcaatgcc tcatgcgcga
    28321 ccggaatgtg gggcgcttaa aaccgggatg tctttgacat tacttgaaca aggtgtttat
    28381 tttccgggga atgacgaacc aattaaatta ctcatcggac tctctgctgc cgatgccgat
    28441 tcgcacattg gcgctattca ggcgttaagt gaattactgt gcgaagaaga aatactcgaa
    28501 caactcttaa cagcatcatc agaaaaacaa ttagcggaca ttatcagcca cagataatta
    28561 ctctctcctc tacaggataa tattatggaa aacaagtctg ctcgtgcaaa ggtccaggct
    28621 tttgggggct ttttgactgc aatggtcatc cccaatattg gtgcttttat tgcctggggt
    28681 tttattactg cgttatttat tcccaccggt tggctgccta acgaacattt cgccaaaatt
    28741 gtcggcccga tgattaccta tttattgccc gtgatgattg gttctacagg tggtcatctg
    28801 gtcggcggta aacgcggggc ggtcatgggc ggaataggta ctattggtgt gatcgttggc
    28861 gcagagatcc cgatgttcct tggctcaatg atcatggggc cgctcggtgg gttggtcata
    28921 aaatatgtcg ataaggcact ggaaaaacgc atacctgccg gttttgagat ggttatcaat
    28981 aacttctcat taggtatcgc ggggatgctc ctttgtctgc tgggttttga agtgatcggc
    29041 ccggcggtgt taattgccaa tactttcgtc aaagagtgta tcgaggcgct ggtacatgcg
    29101 ggttatctgc ctctgctgtc agtcatcaat gaaccggcga aagtgctttt ccttaataat
    29161 gcgatcgatc agggcgtcta ttatccgctg ggaatgcaac aggcttcggt taacggtaaa
    29221 tccatcttct ttatggtggc ctctaaccca ggtccgggcc tggggctgct gctggcgttt
    29281 accttgtttg gtaaagggat gagtaaacgt tctgcgcccg gggcgatgat tattcacttc
    29341 ctcggtggga tccacgaact gtatttccca tatgtgctga tgaagccgct gactattatt
    29401 gccatgattg cgggcggtat gtctggtacc tggatgttta acttactgga cggtggtctg
    29461 gtggctggcc caagtctggg gtctatcttt gcttacctgg cactgacgcc gaaaggctcg
    29521 ttcctggcga caattgccgg tgttacggta ggtaccctgg tgtcctttgc tattacttcg
    29581 ctgatactga agatggaaaa aacggtggaa acggagagcg aagatgagtt tgctcagtca
    29641 accaatgcgg ttaaggcgat gaaacaagag ggtgcattct cgttaagcag ggttaagcgt
    29701 atcgcctttg tttgcgatac ggggatgggc tccagtgcga tgggcgcgac caccttccgt
    29761 aaacgcctgg aaaaagcggg gctggcaata gaagtaaaac attacgcgat agaaaacgtg
    29821 cctgcggatg ccgatatcgt cgtcactcac gccagtctgg aagggcgcgt gaaacgtgtg
    29881 acggataaac cgctgatatt gattaataac tatattggcg atccaaaact cgacacttta
    29941 tttaatcaat taaccgccga acataaacac tgattacaga ggtaaaaatg aaaaccaaag
    30001 ttgctgctat ttatggcaag cgggatgtcc gtctgcgcga atttgaactg ccagaaatta
    30061 ccgataatga actgttagtg agtgtaattt ctgacagcgt ctgtttatcg acctggaaag
    30121 cggcgttact cggtagtgaa cataaacgcg tacccgacga tttagaaaat catccggtca
    30181 ttaccgggca tgaatgtgcc ggggttattg tcgaagtggg taaaaatctc actggcaaat
    30241 ataaaaaagg ccagcgtttt gtattgcaac cggcgatggg gttaccaagc ggatattcag
    30301 caggctacag ctacgaatat tttggcggta acgccaccta tatgattatt cccgaaatcg
    30361 ccattaattt gggctgcgta ttaccgtatc acggctctta ttttgctgcg gcgtcgctgg
    30421 tagagcctat gtgctgcatt attggtgctt atcatgccaa ttatcacacc acgcaatatg
    30481 tttatgagca tcgcatgggc gtcaaacctg gcggcaatat tgcactgctg gcgtgtgcgg
    30541 gtccgatggg cattggcgct atcgattacg ccattaacgg tggcatacaa ccgtcacggg
    30601 tggtggtggt cgatatcgac gacaaacgcc tggcgcaggt gcagaagctg ctgccggtgg
    30661 atctggcggc cagtaaaggc attgagctgg tgtatgtgaa taccaaaggg atgagcgatc
    30721 cggtccagac gctgcgggcg ctgacaggag atgtcgggtt cgatgacatt tttgtttatg
    30781 cggcggtgcc tgctgtcgtt gagatggctg acgaattact ggcggaagat ggctgtctga
    30841 acttctttgc cgggccgacg gataaaaact tcaaagtgcc gtttaatttc tacaacgtcc
    30901 attacaacag cacgcacgta gtcggtacat ccggcggttc aacggacgac atgaaagagg
    30961 cgattgcgtt aagcgccacg gggcagttgc agccgtcctt tatggtcacg catatcggtg
    31021 ggctggatgc ggtgccagat accgtgctca atctgccgga tatccctggc ggtaaaaaac
    31081 tcatttataa cggcgtgacc atgccgctca ctgccattgc cgattttgcc gaaaaaggca
    31141 aaaccgatcc gctatttaaa gagttggcgc ggctggttga ggaaacgcac ggcatctgga
    31201 atgaacaggc cgagaaatat ctgctggcac aatttggcat tgatatcggg gaggccgcgc
    31261 aatgatgtcc ctggcgtggc cattatttcg cgttacggaa caggcagcgt tagctgcctg
    31321 gccgcaaacc ggatgtggcg acaaaaataa aattgatggc ctggcggtca ccgcgatgcg
    31381 ccaggcatta aacgacgtcg cttttcgtgg acgagtggtt atcggcgaag gagaaattga
    31441 ccatgcgccg atgctgtgga ttggcgaaga ggtgggcaaa ggcgatgggc cagaagtcga
    31501 tatcgcggtt gatcccattg aaggcacgcg gatggtggcg atggggcaga gcaatgcgct
    31561 ggcggtcatg gctttcgccc ctcgggatag cctgttacat gcgcccgata tgtatatgaa
    31621 aaagctggtt gttaatcgac tggctgccgg ggtgattgat ctgtctttgc ctctggcgga
    31681 caacttgcgt aacgtggcgc gggcgttagg taaaccgctg gacaagctgc gcatggttac
    31741 gctggataaa ccgcgcctga gtgccgcgat tgaggaagca acacagctgg gcgtgaaggt
    31801 ttttgccctg ccggatggcg atgtcgccgc cagcgtgctg acctgctggc aggataatcc
    31861 ttacgatgtg atgtacacca tcggcggtgc gccagaaggc gtgatttctg cctgtgccgt
    31921 taaagcatta ggcggggata tgcaggccga gctgattgac ttttgtcagg ctaaagggga
    31981 ttacacggaa aatcggcaga ttgcagagca ggagagcaag cgttgcaagg caatgggcgt
    32041 tgacgttaac cgtgtgtact cgctcgatga actggtgagg gggaacgata tcctctttag
    32101 cgctacgggc gtgacgggcg gcgagttggt gaacggtatc caacagacgg cgaatggggt
    32161 gcggacgcag acattactga tcggcggcgc ggaccaaacg tgtaatataa tagactccct
    32221 gcattgatgg tgatctatcg gaagaccaat ggcgaagctg acagaagatg atgtgcttga
    32281 gcaactggat gcacaggaca atttattttc atttatgaaa actgcgcatt ctattttgct
    32341 ccaggggata cgccagtttc tgccgtcgct gtttgtcgat aacgatgaag agatcgtgga
    32401 atatgcagtg aagccgttac tcgcccaaag cggcccgctt gacgatattg atgttgcgct
    32461 gcgtttgatt tatgcgctgg ggaaaatgga taaatggctg tacgccgata tcacgcattt
    32521 ttcccagttc tggcattacc tgaacgaaca ggatgaaacg cccggatttg ccgatgacat
    32581 gacctgggat tttatcagca acgtcaatag cataacccgc aatgcgatgc tctatgacgc
    32641 gttgaaagcg atgaagttcg ccgatttcgc cgtctggtca gaggcgcgtt ttagcgggat
    32701 ggtcaaaacg gcgctgacgc tggcagtaac gacaatctta aaggaattaa cgccgtgaaa
    32761 attgaattaa cggtgaatgg gctgaagata caggcacagt accagaacga agagattgaa
    32821 aatgtacata aaccgttgct gcgtatgctg gcggccttac agacggtaaa tccgcagcgg
    32881 cgtacggtgg tttttctttg cgctccgccg gggacgggta aatctaccct aaccaccttc
    32941 tgggaatatc tcgcgcaaca agacccggag ctgcccgcta ttcagacgct cccgatggat
    33001 ggttttcacc attacaatag ctggctggac gcgcatcaat tgcgcccctt caaaggcgca
    33061 ccagagacat ttgacgttgc gaaactggcg gaaaatctgc gccaggtggt ggaaggggat
    33121 tgtacgtggc cgcagtacga tcgacaaaag catgatcctg ttgaagatgc gttgcacgtt
    33181 accgcaccac tcgtcatcgt cgaaggaaac tggttgttgc tggacgacga gaagtggtgc
    33241 cagcttgcgc aattttgtga tttctcgatc tttatcaacg cgccagctac tgcgttgcgg
    33301 gagcgtctgg tggggcgcaa gctggcggga ggggtatcgc tggcagatgc agaaaccttt
    33361 tatgaccgta ccgacgggcc gaatgttcgc cgggtgctgg aagagagtct gcctgcaaat
    33421 ttgaccttaa tgatgaccgc tacgggtgaa tatcgtctgg tggattaacg ttcctgatta
    33481 caccatcttc cagtcgcacc acacgagaga aatgacgccg ggtaaatgcg gcgtcatgac
    33541 tgattgctac cacgctcgtg cctcgctggc ggcacttctc cagccagctt tcaaacacgc
    33601 tcaaccaatt ttcgtcaaaa tcccgactcg gctcgtccag cagtaatagt ggcggagaga
    33661 gtgcttccag gcaggcgacg gcgaccatcc gtcgctgcgc actatgcaga tccaacgggt
    33721 gcgagttggc agtgtctgct aactgacaac attgcagggc agcatgggta cgttgagtga
    33781 tttcatccgc cgggcatttt tgcagtttca aaccaaatgc gatctcgtca gcgacggtgc
    33841 tgtgaaaaag ttggttttcc gcttcctgaa acagtacgcc aacctttgcc gcgcgctggc
    33901 ggtttttcag gtttttcatc gcctgttgtt gcagcataac cgtaccggct gtgggcgtaa
    33961 gaagacctgc cattactcgt aacagcgtcg atttccctgc gccattgtca ccggtcagcg
    34021 ccaaccattc accttgtttg agttgcagag aaatgtcgca aagacaatcc gttgccgcgc
    34081 caggccagcg ataagatatc tgatttaacg ttaacatagt ggctggagcg ctccgttttg
    34141 caattgccac gcttgctggc agtagttcag gaaaggtgtg cgatgacgtt caaaaagaat
    34201 aatcagcgaa ccacgttcaa acgcccagtg ttgtaagcgc tgcaacagca tttcgctggc
    34261 ctgcggcgtc aggcggctaa aggcttcatc aagaattaag agctttggct gcatcgcgat
    34321 ggcgcaggcg atgaccacgc gctgtgtctc tccaccggag agtgttgccg ggtgacgatg
    34381 gcgcaacggc tggcactcgg tcagagtcag ggcggcatca atccgcgcca taatctctgc
    34441 ttcagcaaga cacagatttt ctggcccaaa ggcaacttct tcttccacgc taaaggtaca
    34501 gccggagagc tgcaaatagg gcgattgctg gacgagctgg atggtggcgg attgttcatt
    34561 aagcgggaga tgcccaatgg gcgtaccgag gagcgtcccc gtgcctgtta tctctcctgg
    34621 cagaaagtcc ggataccagc ccgccatcag ctgtgccagc gtacttttgc cactgccgtt
    34681 gtcaccaaag atggcgacca tccccggttt gacatagtga aagtcataac agaacggagg
    34741 atgcgttgag tgtgtcgggc aataacggaa ctgttctaac gtaaccatat ccacgctccg
    34801 aattctgtca gcatcagcaa gatcatggtg taacgcgcta cgcgttgtag ggtgctatcg
    34861 gctggtgccc acaacgttgt tcgtcggttg tggatccgaa atgcccgcat atccagcgcc
    34921 gcacctcgga cagccagatc gttaagcgca ttgtgtgtta gcggaataat taacgcgggc
    34981 atcgcacgta aacgctgata ccagccctca tccagcggca cgccgcgggc acgctgcgct
    35041 tcatgaataa tcgctaattg ccgttttaac tgctcaacga ccaataacgg cccggcaaac
    35101 agataagcga cgcctggcgg caggcgagaa gcaaacagag cgcgaataaa acattgcacg
    35161 gggacgtact gcatccacaa ctgtgaggtt gaaacaatca ccagaatccg caaccagagc
    35221 gtaatagcat gcgaccaccg ttctggcgag cgtggcgtgc cgcttagcca ttctggtagc
    35281 cagccaccgt gtaccagcca cagcccggct cccagcgaga acatcagcca gacgacatat
    35341 tttgcccgcc gccgcgtggc ctttagcgca ataaggcaga aaaaggtcgc cgcgctatag
    35401 atcggcaaaa tggtctgcgc gggcaggata agcgtggtgc aggccgccaa tgcccacagt
    35461 gttaatgagg taaatggatg catttagcgc acggcagcca ttgccggaaa atggcgcgtg
    35521 gtgcgaatcg gcagctggcg cagtaaaagc cagacaatca ccgctgtaag aattttatcg
    35581 accaggttcg cgcctatcac cgtaatcgcc accgactcca ccaggttttg ccccatcgag
    35641 tgcatccagg caacgaacaa atcggctccg ctaccggtga caccgccgaa cagcgcagta
    35701 cgcagcggta cagcgacgac cgttaccgca agcgtaataa tcacgccgct gacaacgact
    35761 tttggcaggg tgcgaaacca acccgctcgc gccagccaac cggcgaccag gccgatgacc
    35821 atcgcgacgg gtgcaaatgc ggcggcgatc gggtcggtca gcaatcccca gagtaaattg
    35881 gtcagtaagc cggtcagcat tccgatcacc ggaccaagca gtaccgcgct aataagtgtg
    35941 ccgatggagt cgagaaatat aggtaatttg accatgctgg ccagttgccc gccgatcata
    36001 ttgatggcga tagatataac gatcaacacc agtgcctgac tggaaaagtg gctacgcgcc
    36061 ataagaaaac ctctttgaaa gtagttattt aacgggggaa atatgcaact cgtcgtaacc
    36121 agaaagcgcg caaggttggc ggctaaacgc cagttcctca aggctaccga tcaccagttc
    36181 aagcgtggtc cgcacggtac agccgggcat catatgaccg ccaagcatcg tgccgtgtgg
    36241 atcggaaacg cagagatgaa gatgctcacc actctgttcc agcgtgccgt ttagtgagat
    36301 cacttcgaat gtaccgttca ggagcgtggt gccttcttgc ctggcatagc gcaaggcgac
    36361 gtcagtcagg ctaccggtac agcctgcaat ccaggcggca tgaagttgat gctgctgtgc
    36421 aaaagcgtgt agctgggaaa aaacttcctg cccggggagg aggcgcagtg cgtaaaagcg
    36481 tgcggaggaa gaatatgggt agggcaatgt catcattgga gtactccgaa actcggacgt
    36541 attgcggata atatcgacgc tgcatcagtc atattctgat ataagtcagg gtttgtgacg
    36601 gcacaacgaa aagattttgc tacgcttatt cgtgattctg caaagtggaa taaattctac
    36661 aggggcgggg ctgaaaacgt gacgtaagtc agataattgc tttctttgac tggacaatca
    36721 ttccttttat tccacgtttc gcttatccta gctgaagcgt ttcagtcgat taaatgttcg
    36781 acaattaacc aatcagtcgc agtttgcgac aggtaaggtt tccccggacg atttgctgga
    36841 ttactctgtc tggcaaattt gctcagggaa aaccttgcag gagatctatg accgtacgcg
    36901 tagcgataaa tggcttcggt cgcatcgggc gtaatgtggt tcgtgctttg tatgaatccg
    36961 gacgccgggc ggaaattacc gtggtggcaa tcaacgaact ggcggatgct gcgggcatgg
    37021 cgcatttgtt gaaatatgac accagccatg gccgttttgc atgggaagta cgacaggaac
    37081 gcgatcaact ttttgttggt gatgacgcca tccgcgtatt gcatgaacgt tcactgcaat
    37141 cgctcccctg gcgtgaactt ggcgttgatg tagtcctcga ctgcaccggc gtatatggct
    37201 cccgcgagca tggcgaagcg catattgccg ccggggccaa aaaagtgctc ttttcacatc
    37261 ctggcagtaa cgatctcgac gcgaccgttg tttacggcgt caatcaggat caacttcgtg
    37321 cggaacaccg catcgtttct aacgcttcct gtaccacgaa ttgcataatt cccgtcatca
    37381 aattgttaga tgatgcgtac ggtattgagt ccggcactgt gaccacaatt cactccgcca
    37441 tgcacgatca acaggttatt gatgcatacc atcctgacct gcgtcgcacc cgggcagcca
    37501 gccagtcgat cattccggtc gatactaaac tggccgccgg tatcacacga ttttttccgc
    37561 aatttaacga tcgctttgaa gcgattgcgg tacgtgtgcc aaccataaat gtgacggcaa
    37621 tcgatttaag cgtgacggtg aagaaacctg taaaagccaa tgaagtcaac ctgttgctgc
    37681 aaaaagcagc acaaggtgca tttcatggta tagttgacta tacggaattg ccgttggtct
    37741 ctgtagattt taaccacgat ccgcacagtg ccattgtcga tggcacccaa acccgggtca
    37801 gtggcgcaca cctgatcaaa acgttggtct ggtgcgataa cgaatggggc tttgctaacc
    37861 gaatgctcga cacgacgtta gctatggcta ctgttgcttt caggtaagac gcaagcagcg
    37921 tctgcaaaac ttttagaatc aacgagagga ttcaccatgt ctgtaattaa gatgaccgat
    37981 ctggatcttg ctgggaaacg tgtatttatc cgtgcggatc tgaacgtacc agtaaaagac
    38041 gggaaagtaa ccagcgacgc gcgtatccgt gcttctctgc cgaccatcga actggccctg
    38101 aaacaaggcg caaaagtgat ggtaacttcc cacctgggtc gtcctaccga aggcgagtac
    38161 aacgaagaat tctctctgct gccggttgtt aactacctga aagacaaact gtctaacccg
    38221 gttcgtctgg ttaaagatta cctcgacggc gttgacgttg ctgaaggtga actggttgtt
    38281 ctggaaaacg ttcgcttcaa caaaggcgag aagaaagacg acgaaaccct gtccaaaaaa
    38341 tacgctgcac tgtgtgacgt gttcgtaatg gacgcattcg gtactgctca ccgcgcgcag
    38401 gcttctactc acggtatcgg taaattcgct gacgttgcgt gcgcaggccc gctgctggca
    38461 gctgaactgg acgcgctggg taaagcactg aaagaacctg ctcgcccgat ggtggctatc
    38521 gttggtggtt ctaaagtatc taccaaactg accgttttgg actccctgtc taaaatcgct
    38581 gaccagctga ttgttggtgg tggtatcgct aacaccttta tcgcggcaca aggccacgat
    38641 gtgggtaaat ccctgtacga agctgacctg gttgacgaag ctaaacgtct gctgaccacc
    38701 tgcaacatcc cggttccgtc tgatgttcgc gtagcaaccg agttctctga aactgcaccg
    38761 gctaccctga aatctgttaa cgatgtgaaa gctgacgagc agatcctgga tatcggtgat
    38821 gcttccgctc aggaactggc tgaaatcctg aagaatgcga aaaccattct gtggaacggt
    38881 ccggttggcg tgttcgaatt cccgaacttc cgcaaaggta ctgaaatcgt ggctaacgct
    38941 atcgcagaca gcgaagcgtt ctccatcgct ggcggcggcg acactctggc agcaatcgac
    39001 ctgttcggca ttgctgacaa aatctcctac atctccactg gcggcggcgc attcctcgaa
    39061 ttcgtggaag gtaaagtact gcctgcagta gcgatgctcg aagagcgcgc taagaagtaa
    39121 aaaatcacag ggcagggaaa cctgcccttg tttcagcgcg cttttagagc acgcattttt
    39181 tcatactcta aataattcga gttgcaggaa ggcgacaaga gagtgaatcc ccaggagctt
    39241 acataagtaa gtgactgggg tgagcgaacg cagacgcagc acatgcaact tgaagtatga
    39301 tgagtataag gcccgacgat acaggacaag agacatgtct aagatttttg atttcgtaaa
    39361 acctggcgta atcactggtg atgacgtaca gaaagttttc caggtagcaa aagaaaacaa
    39421 cttcgcactg ccagcagtaa actgcgtcgg tactgactcc atcaacgccg tactggaaac
    39481 tgctgctaaa gttaaagcgc cggttatcgt tcagttctcc aacggtggtg cttcctttat
    39541 cgctggtaaa ggcgtgaaat ctgacgttcc gcagggtgct gctatcctgg gcgcgatctc
    39601 tggtgcgcat cacgttcacc agatggctga acattatggt gttccggtta tcctgcacac
    39661 tgaccactgc gcgaagaaac tgctgccgtg gatcgacggt ctgctggacg cgggtgaaaa
    39721 acacttcgca gctaccggta agccgctgtt ctcttctcac atgatcgacc tgtctgaaga
    39781 atctctgcaa gagaacatcg aaatctgctc taaatacctg gagcgtatgt ccaaaatcgg
    39841 catgactctg gaaatcgaac tgggttgcac cggtggtgaa gaagacggcg tggacaacag
    39901 ccacatggac gcttctgcac tgtacaccca gccggaagac gttgattacg catacaccga
    39961 gctgagcaaa atcagcccgc gtttcaccat cgctgcgtcc ttcggtaacg tacacggtgt
    40021 ttacaagccg ggtaacgtgg ttctgactcc gaccatcctg cgtgattctc aggaatatgt
    40081 ttctaagaaa cacaacctgc cgcacaacag cctgagcttc gtattccacg gtggttccgg
    40141 ttctactgct caggaaatca aagactccgt aagctacggc gtagtgaaaa tgaacatcga
    40201 taccgatacc caatgggcaa cctgggaagg cgttctgaac tactacaaag cgaacgaagc
    40261 ttatctgcag ggtcagctgg gtaacccgaa aggcgaagat cagccgaaca agaaatacta
    40321 cgatccgcgc gtatggctgc gtgccggtca gacttcgatg atcgctcgtc tggaaaaagc
    40381 attccaggaa ctgaacgcga tcgacgttct gtaagatatt cctttctgct tatctcaagg
    40441 cccgctctgc gggtcttttt ttcgccaaaa gcaaaattgc ctgatgcgct acgcttatca
    40501 ggcctacacg tatcctgcaa tatattgaat ttgcaggttt ttgtaggccg gataaggcgt
    40561 tcacgccgca tccggcatga caaagcgcac attgatatct gtctgagccc cgctctgcgg
    40621 ggattttttc gccaaaagca aggtgattca gatgagaaat ctgtgaccta tttggcaaaa
    40681 ttatgcttta ttgtttaccc ttgtcagact gcccgtcata aggcggcgga gtgtatttct
    40741 ccattttgag tcagttgaaa aggaatattg aatggaagat ttgaatgttg tcgatagcat
    40801 aaacggcgcg ggaagctggc tggtagctaa ccaggcgctg ctgctaagtt atgcagtaaa
    40861 catcgtggcg gcactcgcga tcatcatcgt tggtttgatt atcgcgcgga tgatttccaa
    40921 cgcggtgaat cgcctgatga tctcccgtaa aatcgatgcc actgttgctg attttctttc
    40981 tgcattagtc cgttacggta ttatcgcctt tacgctaatc gctgccctgg gacgcgtggg
    41041 tgtacaaaca gcgtcagtca ttgctgtact cggtgccgca ggcttagctg ttggtctggc
    41101 tttgcagggg tcactttcta acctggccgc tggcgtgtta cttgtcatgt tccgaccgtt
    41161 ccgtgccgga gaatatgttg acctcggcgg cgtagccggt actgtgctga gtgtgcagat
    41221 tttctccacc accatgcgta ctgcagacgg taaaattatc gttattccga acggtaaaat
    41281 tattgccgga aatattatta acttctcccg cgagccagtt cgccgtaacg aatttattat
    41341 tggcgtggcg tatgattccg atatcgatca ggttaagcag atcctgacca atattatcca
    41401 gtctgaagat cgcattttga aagatcgcga aatgactgtg cgcctgaacg aacttggtgc
    41461 atcgtcgatt aatttcgtgg tccgcgtctg gagcaacagc ggcgatctgc aaaacgtgta
    41521 ctgggatgtg ctggagcgta ttaaacgtga atttgatgcc gccggtatca gcttcccgta
    41581 cccgcaaatg gatgtgaact ttaagcgggt gaaagaagac aaagctgcgt aatcaacgct
    41641 gaggccagat aatactctct ggcctctctc ttattagtta ttctgattgc caattaatat
    41701 tatcaatttc cgctaataac aatcccgcga tatagtctct gcatcagata cttaattcgg
    41761 aatatccaac gtgttttctt attactttca aggtcttgat cttggggcag ctatgattct
    41821 gccgctcggc ccacaaaatg cttttgtgat gaatcagggc attcgtcgtc agtaccacat
    41881 tatgattgcc ttactttgcg ctatcagcga tttggtcctg atttgcgcgg ggatttttgg
    41941 tggtagcgcg ttattgatgc agtcgccgtg gttgctggcg ctggtcacct ggggcggcgt
    42001 agtcttcttg ctctggtatg gttttggcgc ttttaaaaca gcgatgagta gtaatattga
    42061 gttagctagt gccgaagtcc tgaagcaagg cagatggaaa attatcgcca ccatgttggc
    42121 agtgacctgg ctgaatccgc atgtttacct ggatactttt gttgtactgg gcagccttgg
    42181 cgggcagctt gacgtcgaac caaaacgttg gtttgcgctc gggacaatta gcgcctcttt
    42241 cctgtggttc tttggtctgg ctattctcgc agcctggctg gcaccgcgcc tgcgcacggc
    42301 aaaatcacag cgcattatca atctggtagt gggatgtgtc atgtggttta tagccttgca
    42361 gctggcgaga gacggtattg ctcatgcaca agccttgttc agttaggcgc tatctgatgg
    42421 aaaaataaaa cagaggcgct aagcttgcct ccagaggtcc tgaattttgg gcaagtcaat
    42481 taacacggag agactaacgt gaagttcaaa gttatcgccc tagcggcatt aatgggtatt
    42541 agcgggatgg cagcgcaggc taacgaattg ccggatggac cgcatattgt cacctccggt
    42601 acggcaagtg tggatgcggt gccagacatt gccactcttg cgattgaagt taacgtggcc
    42661 gcgaaggatg ccgctacagc caagaaacag gcagatgagc gcgtcgcaca atacatttcc
    42721 ttccttgaac tcaatcagat cgcgaaaaaa gatatcagct cagcgaattt acgcacccag
    42781 ccagattatg attatcagga tggtaaaagt atcctgaaag gctaccgcgc tgtgagaacg
    42841 gtggaagtca cgctccgtca gttagacaaa ctgaattcct tgctggatgg cgcgctgaag
    42901 gcgggtctta acgaaattcg ttcagtgtcg ctgggcgtgg cgcagccgga tgcctataaa
    42961 gacaaagcgc gtaaggcagc gattgataac gcgattcatc aggcgcagga actggcgaac
    43021 ggctttcatc gtaaactggg gccggtatat agcgtgcgct accatgtttc caactatcag
    43081 cccagcccaa tggtgcggat gatgaaagcc gatgccgcgc cggtgtctgc ccaggaaact
    43141 tacgagcagg ccgctattca gtttgatgat caggtcgatg tggtcttcca gttagaacct
    43201 gtggatcaac aacccgctaa aacacctgca gcacaataat acttgtagcc cgacgtattc
    43261 gtcgggctaa tgcctttacc cgatattgcc tcctttttct gtaattttct gtaaaaccat
    43321 gacgtaatca cctatctttg ctcgcggttt catcaaggat aggctgactg aaacggttaa
    43381 gcggacaagg atgcggggag g
//
LOCUS       DAJVUP010000011        41727 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.011, whole genome shotgun sequence.
ACCESSION   DAJVUP010000011 DAJVUP010000000
VERSION     DAJVUP010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 41727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41727
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.011"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(148..1725)
                     /gene="guaA"
                     /locus_tag="OQQ75_000618"
     CDS             complement(148..1725)
                     /gene="guaA"
                     /locus_tag="OQQ75_000618"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HCS1975057.1"
                     /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA
                     QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEA
                     SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVAST
                     ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMHMLERFVRDICQCEALWTPAKIIDDAV
                     ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM
                     FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ
                     GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG
                     LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYNKVSQAFTV
                     FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS
                     RVVYDISGKPPATIEWE"
     gene            complement(1794..3260)
                     /gene="guaB"
                     /locus_tag="OQQ75_000619"
     CDS             complement(1794..3260)
                     /gene="guaB"
                     /locus_tag="OQQ75_000619"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004151980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HCS1975058.1"
                     /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP
                     TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV
                     TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL
                     RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG
                     NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP
                     VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI
                     DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS"
     gene            3422..4792
                     /gene="xseA"
                     /locus_tag="OQQ75_000620"
     CDS             3422..4792
                     /gene="xseA"
                     /locus_tag="OQQ75_000620"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HCS1975059.1"
                     /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS
                     GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM
                     QPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL
                     KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND
                     ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS
                     TRQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL
                     KRTGQQQQRLTQRLNQQNPQPKIHRAQTRIQQLEYRLAETLRVQLSATRERFGNAVTH
                     LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK
                     SRKKVH"
     gene            complement(4789..5004)
                     /locus_tag="OQQ75_000621"
     CDS             complement(4789..5004)
                     /locus_tag="OQQ75_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417005.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HCS1975060.1"
                     /translation="MELHCPQCQHVLDQDNGHARCPSCGEIIEMKALCPDCHQPLQVL
                     KACGAVDYFCQHGHGLISKKRVEFVLA"
     gene            complement(5073..6545)
                     /gene="der"
                     /locus_tag="OQQ75_000622"
     CDS             complement(5073..6545)
                     /gene="der"
                     /locus_tag="OQQ75_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417006.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HCS1975061.1"
                     /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR
                     AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI
                     AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL
                     PWMEDLAPQEEVDEDAEYWAQFEVEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL
                     TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI
                     KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV
                     KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV
                     EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG
                     SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK"
     gene            complement(6663..7841)
                     /gene="bamB"
                     /locus_tag="OQQ75_000623"
     CDS             complement(6663..7841)
                     /gene="bamB"
                     /locus_tag="OQQ75_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HCS1975062.1"
                     /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP
                     TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG
                     WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG
                     LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSA
                     VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ
                     IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYD
                     GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR
                     "
     gene            complement(7852..8472)
                     /gene="yfgM"
                     /locus_tag="OQQ75_000624"
     CDS             complement(7852..8472)
                     /gene="yfgM"
                     /locus_tag="OQQ75_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ancillary SecYEG translocon subunit YfgM"
                     /protein_id="HCS1975063.1"
                     /translation="MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNS
                     HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN
                     ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV
                     ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI"
     gene            complement(8490..9764)
                     /gene="hisS"
                     /locus_tag="OQQ75_000625"
     CDS             complement(8490..9764)
                     /gene="hisS"
                     /locus_tag="OQQ75_000625"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HCS1975064.1"
                     /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP
                     IVEQTPLFKRAIGEVTDVVEKEMYTFEDLNGDSLTLRPEGTAGCVRAGIEHGLLYNQE
                     QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH
                     VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL
                     LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL
                     GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLV
                     ASGADTQSAAMALAERLRDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV
                     TNGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG"
     gene            complement(9875..10993)
                     /gene="ispG"
                     /locus_tag="OQQ75_000626"
                     /gene_synonym="gcpE"
     CDS             complement(9875..10993)
                     /gene="ispG"
                     /locus_tag="OQQ75_000626"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HCS1975065.1"
                     /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT
                     VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQRVNVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES
                     AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV
                     KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV
                     RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVEK"
     gene            complement(11020..12033)
                     /gene="rodZ"
                     /locus_tag="OQQ75_000627"
     CDS             complement(11020..12033)
                     /gene="rodZ"
                     /locus_tag="OQQ75_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoskeleton protein RodZ"
                     /protein_id="HCS1975066.1"
                     /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV
                     RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLLGLEKQAPLRAAKVAPMQSFSL
                     GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
                     GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV
                     DTAATLAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLF
                     SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS
                     PAQ"
     gene            complement(12318..13472)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ75_000628"
     CDS             complement(12318..13472)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ75_000628"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HCS1975067.1"
                     /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQ
                     VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ
                     RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG
                     AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA
                     LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT
                     IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVL
                     MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV"
     gene            complement(13622..14053)
                     /gene="ndk"
                     /locus_tag="OQQ75_000629"
     CDS             complement(13622..14053)
                     /gene="ndk"
                     /locus_tag="OQQ75_000629"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HCS1975068.1"
                     /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV
                     EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT
                     LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR"
     gene            complement(14202..16514)
                     /gene="pbpC"
                     /locus_tag="OQQ75_000630"
     CDS             complement(14202..16514)
                     /gene="pbpC"
                     /locus_tag="OQQ75_000630"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417014.1"
                     /note="penicillin-binding protein 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase PbpC"
                     /protein_id="HCS1975069.1"
                     /translation="MLRLLTKRGCWITLAAVPFLLFLAAWGADKLWPLPLHEVNPARV
                     VVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARA
                     AWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGSKILQLWRALQLEWHLSKREILILY
                     LNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAA
                     RNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKIVTTL
                     DAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMV
                     NAIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEA
                     LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAA
                     AYTAFARHGKAGKLRLQPDDPLLEWPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPL
                     AWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDCTPVVGQFGFASAVPLLNQVNNILLS
                     RSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEG
                     INGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCP
                     PYGHYAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRN
                     VTLHLTDKGDYQLLVMDDVGQIATVKFVMQ"
     gene            complement(16515..21476)
                     /gene="yfhM"
                     /locus_tag="OQQ75_000631"
     CDS             complement(16515..21476)
                     /gene="yfhM"
                     /locus_tag="OQQ75_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha2-macroglobulin"
                     /protein_id="HCS1975070.1"
                     /translation="MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSEN
                     ASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIH
                     VVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTIT
                     TRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRN
                     SLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAG
                     RYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQA
                     TSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFG
                     PRDLYRPGETVILNGLLRDADGKALPDQPIKLDVIKPDGQVLRSVVSQPENGLYHFTW
                     PLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPNDEVKFSV
                     VGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDK
                     GRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPANALPGLRPQFALK
                     SVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSE
                     DEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAG
                     YSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWW
                     QEIDVPAQGLDLTIPVDKTWNRHDLYLSTLVVRPSDKSRSATPKRAVGVLHLPLGDEN
                     RRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDP
                     WQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPLVNHVNIVAQQA
                     LPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRF
                     MASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVR
                     ALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAI
                     PADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAA
                     QLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLV
                     RAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQ
                     KAPLGALREIWEHRADAASGLPLLQLGIALKTMGDATRGEEAIVLALKTPRNSDERIW
                     LGDYGSPLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFLAAR
                     TIQDLPGKWQAQTSFSAEPLTGEKTLNSNLNSDQLATLQVRNSGDQPLWLRMDASGYP
                     QSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLP
                     AGLELENQNLANGSASLEQSGDEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPV
                     TLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP"
     gene            21676..22521
                     /gene="sseA"
                     /locus_tag="OQQ75_000632"
     CDS             21676..22521
                     /gene="sseA"
                     /locus_tag="OQQ75_000632"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HCS1975071.1"
                     /translation="MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLN
                     GHIPGAVFFDIEALSDHTSPLPHMLPRPKTFAVAMRELGVNQDKHLIVYDEGNLFSAP
                     RAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDV
                     LLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE
                     LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLP
                     VEPVK"
     gene            complement(23014..23790)
                     /gene="sseB"
                     /locus_tag="OQQ75_000633"
     CDS             complement(23014..23790)
                     /gene="sseB"
                     /locus_tag="OQQ75_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708361.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced serine sensitivity protein SseB"
                     /protein_id="HCS1975072.1"
                     /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE
                     AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL
                     FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT
                     LFKTIKPVKRAFICSIKENEEAQPNLFIGIEADGDIEEIIQATGSVATDTLPGDEPID
                     ICQVKKGEKGISHFITEHIVPFYERRWGGFLRDFKQNRII"
     gene            complement(23932..25215)
                     /gene="pepB"
                     /locus_tag="OQQ75_000634"
     CDS             complement(23932..25215)
                     /gene="pepB"
                     /locus_tag="OQQ75_000634"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HCS1975073.1"
                     /translation="MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLI
                     QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVEWPDLDDAQRQELDN
                     RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL
                     HTVGRASERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD
                     MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT
                     DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS
                     ASQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW
                     LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA"
     gene            complement(25393..25593)
                     /gene="iscX"
                     /locus_tag="OQQ75_000635"
     CDS             complement(25393..25593)
                     /gene="iscX"
                     /locus_tag="OQQ75_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004104502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HCS1975074.1"
                     /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD
                     DPQASNEKILEAILLVWLDEAE"
     gene            complement(25605..25940)
                     /gene="fdx"
                     /locus_tag="OQQ75_000636"
     CDS             complement(25605..25940)
                     /gene="fdx"
                     /locus_tag="OQQ75_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015683702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HCS1975075.1"
                     /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK
                     SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR
                     YTINHAREH"
     gene            complement(25942..27792)
                     /gene="hscA"
                     /locus_tag="OQQ75_000637"
     CDS             complement(25942..27792)
                     /gene="hscA"
                     /locus_tag="OQQ75_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001559634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HCS1975076.1"
                     /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL
                     ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH
                     LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF
                     DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL
                     RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQADIPDRSDNRVQRELLDAAIAAKI
                     ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM
                     VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI
                     PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS
                     LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE
                     IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDNAA
                     AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV"
     gene            complement(27809..28324)
                     /gene="hscB"
                     /locus_tag="OQQ75_000638"
     CDS             complement(27809..28324)
                     /gene="hscB"
                     /locus_tag="OQQ75_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone HscB"
                     /protein_id="HCS1975077.1"
                     /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ
                     LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL
                     DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSS
                     AEQLEEKLLDF"
     gene            complement(28420..28743)
                     /gene="iscA"
                     /locus_tag="OQQ75_000639"
     CDS             complement(28420..28743)
                     /gene="iscA"
                     /locus_tag="OQQ75_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HCS1975078.1"
                     /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF
                     VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG
                     ESFHV"
     gene            complement(28760..29146)
                     /gene="iscU"
                     /locus_tag="OQQ75_000640"
     CDS             complement(28760..29146)
                     /gene="iscU"
                     /locus_tag="OQQ75_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HCS1975079.1"
                     /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ
                     IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPV
                     KIHCSILAEDAIKAAIADYKSKREAK"
     gene            complement(29174..30388)
                     /gene="iscS"
                     /locus_tag="OQQ75_000641"
     CDS             complement(29174..30388)
                     /gene="iscS"
                     /locus_tag="OQQ75_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HCS1975080.1"
                     /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG
                     WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT
                     EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV
                     QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV
                     RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR
                     LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE
                     PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ
                     GVDLNSIEWAHH"
     gene            complement(30500..30988)
                     /gene="iscR"
                     /locus_tag="OQQ75_000642"
     CDS             complement(30500..30988)
                     /gene="iscR"
                     /locus_tag="OQQ75_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HCS1975081.1"
                     /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ
                     LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD
                     KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL
                     RA"
     gene            complement(31258..31998)
                     /gene="trmJ"
                     /locus_tag="OQQ75_000643"
     CDS             complement(31258..31998)
                     /gene="trmJ"
                     /locus_tag="OQQ75_000643"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HCS1975082.1"
                     /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS
                     QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA
                     EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW
                     LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR
                     ARPESQELNILRGILASIEQQNKGNKAE"
     gene            32117..32920
                     /gene="suhB"
                     /locus_tag="OQQ75_000644"
     CDS             32117..32920
                     /gene="suhB"
                     /locus_tag="OQQ75_000644"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HCS1975083.1"
                     /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD
                     KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS
                     IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK
                     AKQYATTYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL
                     LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAMLANMRDELSDALKR"
     gene            33065..33919
                     /locus_tag="OQQ75_000645"
     CDS             33065..33919
                     /locus_tag="OQQ75_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311427.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1975084.1"
                     /translation="MALPVNKRVLKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP
                     DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLP
                     ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGA
                     NILAVIGQDDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP
                     LLLIHGKADHVIPWQHSEKLYSLAKETKRLILIPDGEHIDAFSDRHGDVYREQMVDFI
                     LSALNPQN"
     gene            34110..35390
                     /gene="csiE"
                     /locus_tag="OQQ75_000646"
     CDS             34110..35390
                     /gene="csiE"
                     /locus_tag="OQQ75_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase inducible protein CsiE"
                     /protein_id="HCS1975085.1"
                     /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD
                     DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI
                     TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFETRDIHFLCLYLQYCL
                     LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSML
                     RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLF
                     AIGIDNTLPEEFAKLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN
                     DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP
                     YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA"
     gene            complement(35382..36521)
                     /locus_tag="OQQ75_000647"
     CDS             complement(35382..36521)
                     /locus_tag="OQQ75_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HCS1975086.1"
                     /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL
                     LGAGLVARFLGSLLIAPRVSDPSRLISALRVLAMMTLLFAVAFWAGAHVAWLMLVMIG
                     FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYQVIL
                     ALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVLQNWRFLACVCLLQGAH
                     AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC
                     GVVRWGIMGATTALPWLIVVQILHCGAFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA
                     MGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC"
     gene            complement(36681..37571)
                     /gene="hcaR"
                     /locus_tag="OQQ75_000648"
     CDS             complement(36681..37571)
                     /gene="hcaR"
                     /locus_tag="OQQ75_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HcaR"
                     /protein_id="HCS1975087.1"
                     /translation="MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVG
                     VPLLVRDKRKVALTAAGECFLQDALAILEQAENAKLRARKTVQEDRQLTIGFVPSAEV
                     NLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELF
                     DEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPAYSGSLAPIVKAWFAQENSQPNI
                     VQVATNILVTMNLVGMGLGVTLIPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEM
                     KPALRDFIAIVQERLASVTA"
     gene            37707..39068
                     /locus_tag="OQQ75_000649"
     CDS             37707..39068
                     /locus_tag="OQQ75_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HCS1975088.1"
                     /translation="MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWL
                     FLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRA
                     FTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSA
                     PGLRDYLGDIAWYLDGMLDRREGGTEIVGGVQKWVINCNWKSPAEQFASDQYHALFSH
                     ASAVQVLGAKDDGSDKRLGDGQTARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWV
                     DGAVSSYYRETYAEAEQRLGEVRALRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVE
                     VWAFCITDKAASDEVKAAFENSATRAFGPAGFLEQDDSENWCEIQKLLKGHRARNSKL
                     CLEMGLGQEKRRDDGIPGITNYIFSETAARGMYQRWADLLSSESWQEVLDKTAAYQQE
                     VMK"
     gene            39065..39583
                     /locus_tag="OQQ75_000650"
     CDS             39065..39583
                     /locus_tag="OQQ75_000650"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate/cinnamic acid dioxygenase
                     subunit beta"
                     /protein_id="HCS1975089.1"
                     /translation="MSAQVSLELHLRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTM
                     RTTVNAQTRDRRKGVQPPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNC
                     QISETDIPNVFAVRVNYLLYQAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQ
                     AVITSHNLSVLF"
     gene            39583..39903
                     /locus_tag="OQQ75_000651"
     CDS             39583..39903
                     /locus_tag="OQQ75_000651"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-phenylpropionate/cinnamic acid
                     dioxygenase ferredoxin subunit"
                     /protein_id="HCS1975090.1"
                     /translation="MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSH
                     GNASMSEGYLEDDATVECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGSDIFIDLP
                     EAQP"
     gene            39900..40712
                     /gene="hcaB"
                     /locus_tag="OQQ75_000652"
                     /gene_synonym="phdD"
                     /gene_synonym="yfhX"
     CDS             39900..40712
                     /gene="hcaB"
                     /locus_tag="OQQ75_000652"
                     /gene_synonym="phdD"
                     /gene_synonym="yfhX"
                     /EC_number="1.3.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate-dihydrodiol/cinnamic
                     acid-dihydrodiol dehydrogenase"
                     /protein_id="HCS1975091.1"
                     /translation="MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVA
                     SLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPA
                     ETLETGFHELFNVNVLGYLLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASK
                     HAATGLIRQLAYELAPKVRVNGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAIL
                     PLQFFPQPADFTGPYVMLASRRNNRALSGVMINADAGLAIRGIRHVAAGLDL"
     gene            40722..41727
                     /locus_tag="OQQ75_000653"
                     /pseudo
     CDS             40722..41727
                     /locus_tag="OQQ75_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phenylpropionate dioxygenase ferredoxin
                     reductase subunit"
BASE COUNT         9802 a        11568 c        10471 g         9886 t
ORIGIN      
        1 tgaaaagcgt gggcaaagca gaagagaaca aatcggacag ctggtttaat taatcgatgt
       61 tagtaacttc aagcctatga ttcttgaaga taaaaaaccc tctgtagtaa cagagggttt
      121 tgttcattca tagtgcaggg attaaaatca ttcccactca atggtagctg gcggcttgcc
      181 gctgatgtca tacaccacgc gggaaatacc gttcacttca ttgataatgc ggttggaaac
      241 gcgaccgagg aaatcgtacg gcagatgcgc ccagtgtgcg gtcataaagt cgatggtttc
      301 gacagcacgc agagagacaa cccagtcata cttacgacca tcgcccatta cgccaacgga
      361 acgtaccggc aggaacacag tgaacgcctg gctgactttg ttgtacaggt ccgctttacg
      421 cagttcttca atgaagatgg cgtcagcacg gcgcagcagg tcacagtact ctttcttcac
      481 ttcacccagc acacgaacgc caaggcctgg tcccgggaac gggtgacggt acagcatgtc
      541 gtacggcagg cccagctcca gaccaatctt acgcacttcg tctttgaaca gctctttcag
      601 cggttcaacc aggcccatct tcatctcttt cggcaggccg cccacgttgt ggtgagattt
      661 gatgacgtgt gctttaccgg ttgcagaagc cgcagattcg ataacgtcag ggtagatggt
      721 gccctgcgcc agccacttca cgtcttccag tttcagcgct tcttcatcga acacttcaac
      781 gaaaacgcgc ccgatgattt tacgttttgc ttccggatcg ttttcgccag ccagcgctga
      841 caggaagcga tcttctgccg gtacgtgaac aatgttcaga ccaaagtgat cgccaaacat
      901 atccagaacc tgctctgctt cgttgagacg cagcaggccg ttgtcgacga atacgcaagt
      961 cagattttta ccgatagcgc ggtgcagcag cattgcggtt acggaggaat ccacaccacc
     1021 agagaggccg aggatgactt tatcgtcgcc tacctgctcg cggatgcgag ctacagcatc
     1081 gtcgataatt ttcgctggcg tccacagggc ttcacactgg cagatatcac gcacaaaacg
     1141 ctccagcatg tgcataccct ggcgggtgtg agtcacttcc gggtggaact gtacgccata
     1201 gaagcgtttt tcttcgttag ccataatggc aaacgggcag ctttcggtgc tggctacggt
     1261 gacgaagtcg gacgggatag cggtaacttt atcgccgtgg ctcatccaga catcgagcag
     1321 cggtttaccg tctgcggtca gcgcatcttc gataccgcga accagtgcgc tgtcgtttac
     1381 gacttcaacc tgcgcgtagc caaattcacg ttcgttagag gcttcaacgt gaccgcccaa
     1441 ctgcattgcc atggtctgca tgccatagca aacgccgaat accggtacgc ctgcttcaaa
     1501 gacatactgc ggcgcacgcg gactgttttc ttcagtagta ctttccgggc cgccggaaag
     1561 aataatgccg cttggattga agtcacgaat ttgtgcttct gtcacatccc acgcccacag
     1621 ttcgcagtaa acacccagct cacgcacgcg gcgcgcaacc agttgagtgt actgagaacc
     1681 gaagtccaga atgaggatgc gatgcttatg aatgttttcc gtcattgacg cttattccga
     1741 ggcaagtgaa acagataata taaatcgccc gacatgaagt cgggcgaaga gaatcaggag
     1801 cccagacggt agttcgggga ctctttagta atggtcacgt cgtgaacgtg gctttcctga
     1861 atgcccgcac cgctgatacg tacaaactcc gctttagtac gcagttcgtc gatagtacca
     1921 cagccggtca ggcccataca ggagcgcagg ccgcccatct gctggtgaat gatctctttc
     1981 aggcgacctt tataggctac gcgaccttcg ataccttccg gcactagttt gtcggcagcg
     2041 ttgtcactct ggaagtaacg gtcagaagaa cctttggaca tcgcacccag agagcccata
     2101 ccacggtaag atttgtaaga acggccctgg tagagttcaa tttcacccgg agattcttca
     2161 gtacccgcca gcatggaacc caccattacc gcgcttgcgc cagcggcgat agctttggcg
     2221 atgtcgccgg agaagcgaat accaccatct gcgataaccg gaatacctgt gccttccagc
     2281 gcttcaactg cgtcagcaac ggcagtgatc tgcggaacac ctacgccagt aacgatacga
     2341 gtcgtacaga tagaaccagg gccgataccg actttaaccg cgctgcaacc agcttctgcc
     2401 aaagcgcgtg cacctgcagc tgttgccacg ttgccgccga tgatttgcag atccggatat
     2461 ttagcacggg tttcacggat acgctgcaaa acgccttctg agtggccgtg ggaggagtcg
     2521 atcagcagaa cgtcaacgcc agcggcaacc agcgcgtcaa cacgctcttc gttacccgca
     2581 cctgcgccaa ctgcagcacc aacacgcaga cggccttgct cgtctttaca ggcgttcggt
     2641 ttacgttccg ctttctggaa gtctttcacg gtgatcatgc cgatcaggtg gaattcgtca
     2701 tcaaccacca gcgctttttc aacgcgtttt tcgtgcattt ttgccagcac cacttcacgg
     2761 gcttcacctt cacgcacggt gaccagacgc tctttcggcg tcatgtaaac gctaaccggc
     2821 tggttcaggt cggtaacaaa acgcacgtca cgaccggtga taatacccac cagttcgttt
     2881 tcttcggtaa caaccggata gcccgcaaaa ccgttacgct cggtcagttc tttcacttcg
     2941 cgcagcgtcg tggttggcag aacagtctgc ggatcagtca ccacaccaga ttcgtgtttt
     3001 ttcacacggc gaacttcttc tgcctggcgt tcaatggaca tgtttttgtg gataaagccg
     3061 ataccgcctt cctgagccag agcaatagcc aggcgcgctt ccgttacggt atccattgct
     3121 gcggaaagca tagggatatt cagacgaata gttttcgtca gctgggtgct gaggtcagca
     3181 gtattcggca gaacggtaga atgagcagga acgaggagaa cgtcgtcaaa cgtcagagct
     3241 tctttagcga tacgtagcat gggcaatatc tcgaccagag tggttaataa atattgccgc
     3301 ggcattatac agagcgtaac cgattgcatc tacccctttt tgcaaaaaat gcttgctatc
     3361 cccgaagggc gggttactat cgactgaata acctgctgat ttagaatttg atctcgctca
     3421 catgttacct tctcaatccc ctgcaatttt taccgttagt cgcctgaatc aaacggttcg
     3481 tctgctgctt gagcatgaga tgggacaggt ttggatcagc ggcgaaatct ctaatttcac
     3541 acaaccggct tccggtcact ggtactttac actcaaagac gacaccgccc aggtacgctg
     3601 cgcgatgttc cgcaacagca accgccgggt gaccttccgt ccacagcatg gacaacaagt
     3661 tttagttcgc gccaatatta cgctctacga gccgcgcggt gactaccaga taatcgttga
     3721 gagtatgcag ccggccggtg aagggctgct gcaacagaag tacgaacagc tcaaagcgaa
     3781 gttgcaggct gaaggtttgt tcgatcagca atacaaaaaa ccacttccct cccctgcgca
     3841 ttgcgttggt gtgatcacct caaaaaccgg tgctgcgcta catgatattt tgcatgtgtt
     3901 aaaacgtcgc gatccttctc taccggtgat catctacccc accgccgttc agggcgatga
     3961 cgcaccgggg caaattgttc gcgccattga actggcgaat cagcgcaatg agtgcgacgt
     4021 gttgatcgtt gggcgcggcg gcggttcgct ggaagattta tggagtttta acgacgaacg
     4081 cgtagcgcgg gcgatttttg ccagccgcat tccggtcgtc agcgccgtcg ggcatgagac
     4141 ggatgtgacc attgccgatt ttgttgccga tctgcgtgcg ccaacgccgt ctgccgccgc
     4201 tgaagtagtg agccgtaatc agcaagagtt actgcgccag gtgcaatcga cccgtcaacg
     4261 gctggagatg gcgatggatt attatctcgc caaccgcacg cgtcgcttta cgcagatcca
     4321 tcaccgatta cagcaacagc atccgcagct ccggctggca cgccagcaaa ccatgcttga
     4381 gcgcctgcaa aagcggatga gctttgcgct ggaaaatcaa cttaagcgta ccgggcaaca
     4441 gcagcagcgg ttaacacagc ggctgaatca gcaaaatcca cagccgaaga ttcatcgcgc
     4501 gcaaacgcgc attcagcaac tggaatatcg tttagcagaa accctgcgcg tacagcttag
     4561 cgccacgcgt gaacgtttcg gtaatgcagt aacgcacctc gaagccgtaa gcccactgtc
     4621 aacgctggcg cgtggataca gcgttactac tgctactgac ggcaatgtac tgaaaaaagt
     4681 gaagcaagtt aaagcgggtg aaatgctaac cacacgtctg gaagacggct ggatagaaag
     4741 tgaagttaaa aacatccagc cagtaaaaaa atcgcgtaaa aaggtgcatt aagccagcac
     4801 gaattcaacg cgttttttcg atatcaagcc atgcccgtgc tgacagaagt aatctactgc
     4861 accgcaggct tttaacacct gcaacggttg atggcagtct ggacaaagag ctttcatttc
     4921 aataatttcc ccgcaggatg ggcaacgcgc atggccgtta tcctgatcaa gcacatgctg
     4981 acattgtgga caatgcagtt ccatatgaat tcctccggta gccatccctc tacattcata
     5041 gagggaatgg cagataaaat acttacggat aattatttat ttttcttgat gtgcttcatc
     5101 agacgcttac gtttacgcat ctgggttggc gtcagggtgt tacgcttgtt cgcatacggg
     5161 ttttcccctt ctttgaactg aatacgaatc ggcgatccca ttacgtccag cgatttgcgg
     5221 aagtagttca tcaagtagcg cttgtaggaa tcaggcaggt ctttcacctg attaccgtga
     5281 atcaccacaa tcggcgggtt ataaccacca gcgtgggcat atttcagctt cacacgacga
     5341 ccgcgtacca gcggcggttg gtgatcttca acagccatcg tcatgatgcg cgtcagcata
     5401 gaggtcccca cacgacgggt ggagctgtca tacgcttcac gtactgattc aaacaagtta
     5461 ccaacaccac tgccgtgcaa ggcagagata aagtgcacac gagcaaaatc gataaagccc
     5521 agacggaagt ccagcgtttc tttcacctgc tctttcactt cctggctcag gccatcccac
     5581 ttattcacca caatgacaag tgagcgccca ctattgagaa taaagcccag cagcgagaga
     5641 tcctgatcgg aaataccttc gcgcgcatca atcactaaca tcaccacgtt ggcatcttca
     5701 atggcctgca acgttttgat tacggagaat ttctctacag catcggtgat tttgccgcgt
     5761 ttacgtacgc cagcggtgtc aatgagcaca tactcacgtc catcgcgttc cattggaatg
     5821 tagatactgt cacgcgtcgt gccaggcatg tcataaacaa caacgcgctc ttcaccaaga
     5881 atacggttag tgagtgtaga cttacctacg ttcggacgac ccacaatcgc cagtttgatc
     5941 ggcagacttt gcgggtcgaa gtcgtcttcc tcttcttctt cgccgttctc ttccacttca
     6001 aattgcgccc agtattcagc gtcttcgtcg acttcctctt gcggtgcgag atcttccatc
     6061 cacggcagca gcacatgctc cagcagactt aatacgccac gaccgtgaga cgcggcgatc
     6121 gggtagattt cacctaagcc aagcgagtag aaatcaacca ctgcctgatc gggatccaga
     6181 ccgtcagttt tgtttgccac caggaaggtc ggtttttcac gggagcgcag atgtttggca
     6241 atcgcttcat ctgccggcat caggcccgcg cgcgcatcca ccataaacag tacgacgtcc
     6301 gcttcttcaa tcgccagcag cgactgttcc gccatgcggg tttctacacc gtcttctgtg
     6361 ccatcaatcc cgccggtatc aatacagata aactcacggc cttcaatttc cgcacgaccg
     6421 tacttacggt cacgagtcag acccgggaaa tccgcaacca gcgcatctcg ggtgcgagtt
     6481 agacggttaa ataacgtgga ttttcctacg ttagggcgcc cgacaagcgc gaccacaggt
     6541 accatgttta aagcctcatt tttataaatc atcagacaac gcacgctata ttcgcgtcgt
     6601 tgttaaaaac aggaaaacgg cccctgtcca ggagccgttt tcaaagtgaa cgacagagac
     6661 gattaacgtg taatagagta cacggttccg tcttttgcct ggatcagcag tttgccgtca
     6721 gcggcaaccg gttcagtctg gaaaccggaa ctatcaactt tttgctgggc aacgaaacga
     6781 ccatcttcga cattaatcca gtgcagataa ccttcactgt caccgaccac caggttgcca
     6841 tcatacagca ccggagaagt cagcaggcga tgcaacagat cgctttgtgt ccacagcgta
     6901 acgccgccat caatggtcaa cgccatcacc cggtcatttt gatcgaccag atagatgcga
     6961 ttgccgtcga cgatgaaatc attcaccgaa cccagttcgc gtttccacat aatctgacca
     7021 ctgcgcagat caagcgccgt caggttacca ttataggcca gcgcgaaaac aacgccgtta
     7081 acaacgacgg gagtcgtgtc aacatcgctc agacggtcaa tttcggtaga accggtcgcc
     7141 tgggaaatac gctgctgcca aatcatctgg ccctgttcca tcagcactgc gctgacgcga
     7201 ccattatcgc cccccacgac ggccgcacca aaagccgttg ccggcgcaga ctcgccacgc
     7261 aaagagagcg aaggcatatc gaggttaact gtccatttga cagcgccgtc agcttcgttc
     7321 agcgcttgta actgaccgtt actggtgtgg attaacacca gaccgtcgct gaccaccggg
     7381 cgcgaaagtg cttcacccgc gactttagtt tgccatgcca cagtaccatc gctggtattc
     7441 agcgcgtaaa cctgcgcctt ttcgctgcca atgtagacat gcccaccaga cacggtcaca
     7501 ccgccagaaa gtaatgcagg ctctttagag aaccagccat ctttctcggc caggctgaca
     7561 gaccagattt ctttgccatc atccgcattc agcgctttta ccaaaccagc gcggtccgct
     7621 gcatagacaa cgttgtccgc cagtgccgga tgaagattgg aatagaagtt gccaatgccg
     7681 ctaccaacgg aagtactcca cgccgtggtc ggcgtaaact ggttttcaac ggttggcaat
     7741 ggggacatct ttaccacatc ttcttcgctg ttaaacagcg aacagccgct taaaagggta
     7801 acggaaagca gtcctggcag cagtaattta cgcaattgca tcgggtccct ctcagatgga
     7861 caaattatta attttcatct gcatcatttc gctcagtgcc ggagtaacat cgcttttcac
     7921 gcctgcttcc catgcactac gcgcaccttg cttatcacct ttgctcagca atgcttcacc
     7981 acgcaggtcg gcaacaatgg cagcccaccc ttcacctttg atggtatcaa gggttttcag
     8041 cgcggcatca gcctgcttga gctgtacctg aacgcgagca agacgcagat ttatcacggc
     8101 tttgagattt tcatcgctcg tgtctgccag cccctgttgt aactgggcgg cagctttctc
     8161 tagttcattt ttgtcaacaa attgctgcgc aagttccaaa gaagccagcg caccataagt
     8221 atttttattt tcagcagcaa atttttccgc cgccgggatg ctatccggtt tgccttcgct
     8281 cactgcggta accgcatttt gataggcaag agaagcggag cgtgcagaat caacctgatg
     8341 gctgttccag tagcgccagc caatcagtgc gccaacgccc aaaatcaccc caacagccag
     8401 tgctttgcca ttttcagcaa aaaagcgttt aaccgcttct acctggtcgt tttcgttctc
     8461 gtaaatttcc acgctgtcct tctccttcct taacccagta acgtgcgcaa atgcgcggct
     8521 acgctatcct gcgcaactgc cgtttgctca ccagagcgca aatccttcac tactgctgtg
     8581 ccgttagtca cttcagactc acccagcacc acagcaacgc gggcacccca tttatcagca
     8641 cgggcaaact gtttcttaaa gttgccgccg ccgtggttgg tcatcaattt cacgccctgt
     8701 aattcatcac gcagacgctc agctaatgcc atagccgcag attgtgtatc agcacctgaa
     8761 gccaccaggt atatatcgac aataggatcg gctttaaatt ccggattaac ggcctgtact
     8821 aacaatacaa gacgttcgag gcccatcgca aaaccgacag ccggtgttgc acgaccgccc
     8881 agttgttcca caagaccgtc ataacgaccg cctgcacaca cggtgccctg ggagccgaga
     8941 ctgttagtca cccactcgaa aacggtacgg ttatagtaat ccagaccacg caccagacgc
     9001 tggtttacgg tgtaagcgat ccccgcgctc tcaagcagtt tgcacagacc ggcaaaatgc
     9061 tcacgagatt cctcgtccag ataatcacct aatgccggag cgtcgttgag aagcgcctgc
     9121 acttccggat tttttgaatc cagcacgcgc agcgggttag tgtacatgcg gcgtttgcag
     9181 tcttcgtcca gcttttcttt atgctgctca aggaatgcca ccagcgcatc gcggtaattg
     9241 gcgcgtgctt ccagcgaacc gatagaattc agctcaagag ttacgtgttc ggaaataccc
     9301 agcgcgcgcc accagcgggc ggtgagcata atcagttcag cgtcgatatc cggaccttgc
     9361 agaccgaaaa cttcgcagcc caactgatgg aactgacgat aacgcccttt ctgcggacgc
     9421 tcgtgacgga acatcggccc gatataccac agacgctgtt cctgattgta cagaagacca
     9481 tgctcgatgc cggcgcgtac acagcccgcc gtcccttcag ggcgcagagt caggctgtcg
     9541 ccattgagat cctcaaaggt gtacatctct ttttcaacca cgtcggtgac ttcaccaatc
     9601 gcacgtttga atagcggggt ctgctctaca atcggcaagc ggatttcact gtaaccgtag
     9661 ctgccgagca cgtttttcag tgtgccttca atgcgctgcc agatggccgt ttcgccaggc
     9721 aggtaatcgt tcatgccgcg aatggcttga atgttttttg ccacgtttat tctctttctg
     9781 aatataaaaa tgaaccctca acgcttccct caatgtttgg ggagccatgc gggttcaatc
     9841 atacacggga agcgaggcgc ttcccatcac gttattattt ttcaacctgc tgaacgtcaa
     9901 ttcgacgcgc ttcatccagc tgactggctt tcgcacgaat gcgtgcttcc agctggtcga
     9961 tcatatcgtt gttgtccaga cggtctttgc gcacgccatc ttcatagagg ccgcttttct
    10021 tgttgccgcc ggtgacgccg agtgtagaaa ccagcgcctc acctgggcca ttcaccacgc
    10081 agccgataat agaaacgtcc atcggagtga tgatatcttc caggcgttgc tccagcgcgt
    10141 taaccgtacc gataacatca aattcctgac gcgaacaggt cgggcaggcg atgaagttga
    10201 tccctcgcga acggatacgc agcgatttca aaatatcgaa accgactttg atctcttcga
    10261 ccggatcggc cgccagcgat acgcgcagcg tgtcgccgat gccttcagac agcagcagac
    10321 ctaaaccaat ggcggatttt actgccccgc tgcgtgcacc accggcttcg gtgatcccca
    10381 gatgcagcgg ctgatcgatc tgttttgcca gcaaacgata agactcaaca gcgaggaaga
    10441 cgtcagacgc tttcacgctg actttgaact gatcgaagtt caggcgatcg agatgatcaa
    10501 catgacgcat ggcggattcc agcaacgcct gcggcgtcgg ttcgccatac ttttcttgca
    10561 gatctttttc cagcgatccg gcgttaacgc caatacggat cggaatgttt ttatcgcgcg
    10621 cacagtcaac caccatgcga atacgctctt cattaccgat attgccaggg ttaatacgca
    10681 gacaatcgac gccgtattcc gctactttca gcgcaatgcg atagtcgaag tggatgtcag
    10741 ccaccagcgg cacgttaacc cgctgtttga tgagtttgaa cgcttctgcc gcgtccatcg
    10801 tcggtacgga gacacggacg atatcagcgc caacgcgttc cagcgccttg atttgattga
    10861 ccgttgcttc gacatctgtc gtacgcgtat tggtcatgga ctgtacggcg atgggagcac
    10921 catcgccaat cggcacattc ccaacgtaaa tacgtgttga ttttctacgt tgaattggag
    10981 cctggttatg catgaaaaat ctcccgcgtt acccgtctgt tactgcgccg gtgattgttc
    11041 ggcattgagg gtcagacgcg caacctggtt agttctgata aaacgactca gatcgacagg
    11101 tttcccttga tactggatct gtactgcggc tggcgcacca attttcagtt tgtacggtgc
    11161 ctggccggtt aagttcaaat taccgtcttt acgctgcata ccgctaaaca attttttacc
    11221 ggtagcatca gtgacctcca gccagcaatc ggcagtaaag ttcatcacca gcgcattcgg
    11281 atcagccacc ggcgtggtca cgccagcctg atcggttggc aacggcgcag caccatctgg
    11341 cgttgttgct gccgttggtg ccagggtcgc ggcggtatca acatttgcct gcgaaggcga
    11401 aacaaccgca ttctgttgcg gatcaacagc tggtgctggc gcagttacgg caggtgtttg
    11461 cgtgttggtt gcggtagtat ccacagacgc tggcggcgtg gacgttgtag ccgggtctgt
    11521 agttgtcgac gtatttaacg gaacactctg cccctgctcg ctattactgc tcagttccgc
    11581 cgaagattga tcggccatag tggtgatctc ttcctgctga gctttgtggt cttgccacca
    11641 ccaggcaccg ctcaggccga taaccacaaa caacaccagc caggtgaagg tcatcagcca
    11701 gccgtcacgt tttttgcggc gtttaccgag ggaaaaactc tgcatcggcg caactttcgc
    11761 agcccgtagt ggagcctgct tttccagccc tagcagcagt tcttcttctg gaatatgtac
    11821 cagacgcgca taagagcgga tatatccgcg caggaatgtt gaagcaagat cggcgggtgc
    11881 cttatcttct tcaatgtcgc gtaccgtgga aaccttcagg caaagtcgct cggcaacggc
    11941 ctgctgacta agtcctagtt gttcgcgagc attacgcagg cgagcgccgg tagtaagtgc
    12001 ttcattttgg tcgtgcgtgg cttcagtatt cattcgctgc aggtacgttt aaatgagaat
    12061 tgagatgccg gtgaaccatc atgctcaccc acaccgcgaa acatccgtta agttaaccgt
    12121 tatcatacag tataagaccg tctgtgtgct cgtgacaaag cccacattca ctaaggctaa
    12181 cttactgttg catcgttaca tactgcctta aagtcagcaa aaacgcaccg ttaatattga
    12241 ccagacaatt gcaacttaat acttcattca taaaagatta cgccacggta cataaagtaa
    12301 ccgtggcgta atggctatca gaccgcttta atgtcgatgg cttcaccctg catccgttta
    12361 cgcagggtac gtttcgtacg gtcgataaca tcgcccgcca actgaccaca ggcagcatcg
    12421 atatcatcac cacgagtttt acgcacaata gtggtgaaac cgtagctcat cagcactttt
    12481 gagaaacggt cgatacggct gttcgaactg cgtccatacg gcgcgcccgg gaacgggttc
    12541 cacgggatca ggttgatctt acacggcgta tctttcagca gctccgccag ttggtgcgcg
    12601 tgttcagtgc cgtcgttaac gtggtcaagc atcacgtatt caatagtgac tcggccctga
    12661 ttggcgttgg atttctccag ataacggcgc accgcagcaa ggaacgtttc gatattgtac
    12721 tttttgttga tcggcacaat ttcgtcacga atttcgtcgt tcggcgcgtg cagggaaatt
    12781 gccagtgcaa cgtcgatcat atcgcccagt ttatccagcg ccggaactac accggaagta
    12841 gaaagcgtga cgcgacgttt agacaggcca aaaccgaaat catccagcat gatttccatc
    12901 gccggaacga cgttgttcag gttgagcagc ggctcgccca tgcccatcat cactacgtta
    12961 gtgattgggc gctgaccggt gacttttgct gcgccgacga ttttcgccgc acgccacacc
    13021 tggccgataa tttccgacac ccgcaggttg cgattaaagc cctgctgggc ggtggaacag
    13081 aatttacact ccagcgcaca ccccacctgc gaagagacgc agagcgtggc acggtcgtct
    13141 tccgggatat acaccgtttc gacgcgctga tcgccaacgg cgatcgccca tttaatggtg
    13201 ccgtcggatg aacgctgttc ttcaaccact tccggtgcgc ggatttccgc cacctctttc
    13261 agtttgccgc gcaacacttt gttgatgtcg gtcatctcat caaagttgtc gcagcaatag
    13321 tgatacatcc acttcatcac ctgatcggcg cggaagggtt tttcacctaa atctttaaaa
    13381 aactcccgca tctgctgacg gttgagatcc agcaggttga tttttccatc tttcgtggtg
    13441 acgttttcag gtgtgactaa ttgttcagac atatgctatt ccggcctcgt tattacacgt
    13501 tatggcccct ggagggttga aaaaagaaac gccccggtga gcggctgctc gtccgggggc
    13561 gctgcattgt acaaattctg gcgcacggat gccacgtttg cacgcggcat ttacgaaatt
    13621 attaacgggt gcgcgggcac acttcgcctt cgccaaagaa ataagcgatt tcgcgagcgg
    13681 cagattcgac ggaatcagaa ccgtgggtac cgttttcggt caggctgtca gcgtaatcag
    13741 cgcgcagagt accagccagt gcgtttgccg gattggtcgc gcccagcaga tcgcggtgac
    13801 gctgaacggc gttttcacct tccagcacgg aaaccacgat cgggccagag gtcatgaatt
    13861 caaccagacc atcaaagaac ggttttccat cgtgttcagc ataaaagcca cgtgcctgtt
    13921 caacggtcag gtgcagcatt ttggtgccga caattttgaa ccctgcagct tcaaagcgcg
    13981 caaagatatt accaatgacg ttttttgcta ccgcgttcgg tttgatgatg gaaaaagtac
    14041 gttcaatagc catttttacc tctgtaaatt gttctgttgt tgtctgtacc agcgtacgag
    14101 atggcgcgga ttataatgag caacagggcc gttgactatt gatgaaggta acattttttt
    14161 aaaataaaat gagttttagc aacaatcagg gacaaaacag actattgcat gacaaatttc
    14221 actgtcgcga tttgccccac gtcatccatc accagcaatt gataatcacc tttatccgtc
    14281 aaatgcaggg tcacgttgcg cccgcgttca gttaacggtt cgccattcag aaaccaccag
    14341 cgttcacctg cccctccact tgattgcaac ggcaaagtcg cttccgctgc gcccggtaaa
    14401 cgtttaataa tcgcgccatc gcgaacgcct gtcagctgca gcgggagctg ggcatagtga
    14461 ccgtatggcg ggcaacttgt cgaggccggt ggtaagcgca cagcgcgacg ttctgatgcg
    14521 ggcagccagg gttccagcgg tagcggccag acatttatca tttcttgtcg cgcttgcggg
    14581 caatcagcgg caacacgttt gccattttca tccagccaga tggggaaacg aatgccatta
    14641 atgccttcct gctccggcag taatagagtt ggcggctgac tcccgtccag cagccaggtt
    14701 gccaggcggc ggcgacagtt accgtcacct tccggcaaag actgtccgcc cggccagcag
    14761 ataacgccac gagtgactga gttcgggcgc gggtcttccg gcagattcgc actgcgcgac
    14821 agtaagatat tattgacctg attcaacaat ggtacggcac tggcaaagcc aaactgacca
    14881 acaacgggcg tgcagtccgg tctgccagtc cagatcccaa tgacatagcg agcgttaacc
    14941 ccaatcgccc aggcgtcacg atagccatag ctggtgcccg ttttccatgc cagtggggcg
    15001 acgcgcggca aggcactatc cggcaagggt tgcgcttcat cagccataat ccggcgaatg
    15061 atccacgccg cccccgacga cattaaaggc cattcaagca gcggatcgtc aggctgtaag
    15121 cgcaatttgc ctgccttgcc gtggcgagca aacgcggtat acgctgccgc catatcttcc
    15181 agttttgcac cagcgccgcc gagaatgagt gaaagattcg gcgcagcacc gttgggcaaa
    15241 tataacggca atccaacatt gcgtaacttt gccgcaaacc gtttcggtcc ataggcttcc
    15301 agcacctgca cagcaggtaa gttcagcgag cgcaccagcg cctcgctcat gctgatcggg
    15361 ccatgaaaac cgctatcaaa gttacctggt cgataatcac cggtgcgccg ggggacgtct
    15421 tgcagcagtg atgccgggtg gatcaagcct tcatccagcg ccagaccata aacaaacggt
    15481 ttgagcaccg atcctggcga tcggatcgca ttgaccatat caacatgacc aaagcgtgaa
    15541 tcatcgttga gatcaaccga tcccacccag ccgcgaacac gcatatcggt atgatcaacc
    15601 acgatcatcg ccagtgagct gcgcggtggc aaccgccctt tccagttttg cgccagttct
    15661 tccagacgtc gttgaagacc ggcatccagc gtagtaacga ttttgtcgct tttgctttta
    15721 ccgagcatca tgcgcgaaaa cagcggtgcc agttgcggca tttgtcgggg tgccagccag
    15781 atgggttctt cccttgactc ttttacctgc tcacgggacc acacaccttg cacggccatc
    15841 cgttcgagca ctttattacg cgcggcttcg gcacgctccg gccaacgatc cgggcgcagt
    15901 cggctgggcg cttgcggtaa caccgccagc attgccgcct cggaatagct taaattcgca
    15961 ggcgattttc cgagataagc ccaacttgcc gcaccgatcc cctgcaacgt accgccaaac
    16021 ggagcgcggt taagatacaa gatcagaatt tcacgcttag acaaatgcca ctccagttgc
    16081 aacgcgcgcc agagctggag aattttgcta ccaaatgttt tggggtgagg atcaagcaga
    16141 cgagcaacct gcatagtgag cgtgctgcca ccagaaataa cccgtcccga agtgagatct
    16201 tgccatgctg cgcgcgccac cgagaatgga ttcacccccg gatgcttcca gaaccagcga
    16261 tcttcataat tgatcagcgc ttcaaggtaa cgtggagaca catcttcgat tgttaccgga
    16321 taacgccaga tgccatcagc atcggcgaag cgccagagcg gcgtaccatc ctgcgccacg
    16381 accactcgtg cgggattgac ttcatgcagc ggtagaggcc agagtttatc tgctccccac
    16441 gctgcaagaa aaaggagaaa tggcacagct gccagcgtta tccagcagcc gcgtttggtt
    16501 aacaagcgaa gcatttacgg tcggacaatc agcagatctt cagccgcgcc ggtcgcccgc
    16561 cattggggaa catacattga ttccaccatc ggttgcggta cctgatacgt tcccggcgtc
    16621 accgcccgcg ccagatacac cagcgttacc ggttggtatt catcaacggc aaccgccgcc
    16681 acaaagcgat cgtcacggaa ctcaatgtgc ttaatgctcg cctgctgcat ctggttcagt
    16741 aagttttgca cttcgtcacc actttgctcc aggctggcgc taccgttcgc cagattctga
    16801 ttttccagtt ccagacccgc aggcagcaga tccacgacta acgcatccgg cacgctgtta
    16861 ctggctttta cctgcaacca gaccagcacc agatcgccgc tacgtaacga gtccagcgat
    16921 ttgctcttac catcagtacc aagaatatga cgctcgattt gcagcacatt gttcgccggt
    16981 aaaggtgcgg attgcggata accgctggca tccatacgca accataacgg ctgatcgcca
    17041 ctgtttctca cctgcaaggt ggcaagttga tcgctattca gattgctgtt tagcgttttc
    17101 tcgcctgtca gcggctcagc tgagaaagag gtttgcgcct gccatttacc cggtaaatcc
    17161 tgaatcgtac gggcagccag gaacaacgcg ttactttcct gcgtcgatag ccagcgttca
    17221 ccaaacgcct gctgcgaaag tgtgttcagc aaagtgtact gctcatcggg tagcagttta
    17281 ttttcttcca gcaaggagag cattaacgcg ttgtcgcgca gtggactacc gtaatcaccc
    17341 agccatatcc gctcatcact atttctcggc gttttcagcg ccagcacaat cgcttcttca
    17401 ccacgcgttg catcacccat ggttttcagc gcaatgccaa gttgcagcag cggtaaacca
    17461 gaagcggcat ctgcacgatg ctcccagatt tcacgcagcg cacccagtgg tgctttttgc
    17521 tgacgggcca gcaccagcgc agcgtaagac tgaacggcga atttactggc tttgagatta
    17581 tccgcgtacg ggatcgacat catgcccgga tcttgtaaat agcgcagcag acgctcatta
    17641 ccccggttaa tggcgtctgt cggcacgctg taaccctgtt cgcctgcgcg gaccaggaaa
    17701 tccatcacgt aagccgtcag ccagtactct tcgtcaccgt ttttatccca cagcgcaaag
    17761 ccgccgttat cacgttgcat ttgcagcaaa cgggaaatgc cgatatcgac cgatgcacgg
    17821 cgtttctcat cactgtcgcc tttgatgccc aacgcctgca gttgggctgc gttggtataa
    17881 agtgacggga acaggccgct ggcggtttgc tcaagacagc cgtacggata cgcttttaac
    17941 tctttgatat aacgtgcaat gttcagcggt ggtttgccgc tcaacaacaa ttgcccttcc
    18001 agcgtaacag gcgagaagtt ttgcaatcca tccgccggaa tcgcccatgt ctcaccaggc
    18061 tgtaacgccg taccgtaatt aaccgtttgt gccgggaacg ccggacggac gccgattttc
    18121 cactgcttat gctgatcggc aacggtttca cccggtaacg ctaacccgct aatggtggcc
    18181 tgaatttctc catcgccata acccggcaat gctcgcaccg ggataaacag cgtagtacgc
    18241 acacctggcg ctaattcaac ggctgcgggt gaatcgctga ccagttcaag caaaccactg
    18301 gcggtcaggg caacgttcag tttttgcggt ttatcggtaa gattagtgat atccagcgtc
    18361 agacgcgagg tatcgccact cgccataaag cgcggcatgt tcagttcagc aatcaccggt
    18421 gcggcaacta tcactttgct ttcgttgcta ccgaaatcat ctgccgtcca ggcttgcgcc
    18481 atgacgcgca attcaccgtt aaaatcgcca atcggcagtg taaccgagcc ttcgccctgt
    18541 tcgttgagcg ttaccggcag cgcctgctgc gcgacaatat tgacgtgatt gaccagcggt
    18601 ttaccaccac gtttcagctc atcaccatcg ccaccgaaac gcagagctgc cagacgcccc
    18661 tgaccttcaa taacctgacc gtaaatatcg taaatgtctg cgccatagcg tttctgacca
    18721 aagaacgcct gccacggatc tggcgtgacg tagtcagtaa tattcagcac accactatca
    18781 acggcagaca ccagcacatt cacctgttta ggcttctcgc catttttagt gctggcttta
    18841 attttcacgg ttaatggttg attgggacgc atttttgctg gtgtttccag cgccagatcg
    18901 aggcgacggt tttcatcgcc aagcggcaga tgcaacacac caaccgcgcg ttttggcgtc
    18961 gcggagcgag atttatcgct aggacgtacc accagcgtac ttaaatacag atcatgacga
    19021 ttccaggttt tatcgaccgg aatcgtcaga tccagccctt gagccggaac atcaatctct
    19081 tgccaccaca gcggcccttc actggactcg accatcgcat aacctttacc cgccgttggc
    19141 gcggcgatat gcaacttaat ggtgtcgcca gggcgataac tggctttatc cagtttcagc
    19201 gtgacacggt cgggtcgcac tgcgccgcta ccgtcgctgt tgtcctgcca gctatagcca
    19261 gcccagaaac gaacactact gaccgcttca ttcggcgctt tgacttccag acgataagcg
    19321 ccccactcta ccggaaaact gaccttgccg gtttcgtccg ctttcagatc cagagtttgt
    19381 tcattttcga tcagatcttt ttgatcaaac tgtgactgcc agccttcatc ttctgaccag
    19441 ttccagtagt aatcgcggcg ttcgcgaatc aggcgcacct gcaagcccga cacggctttt
    19501 ttcacgcctt gtgcatcgct ataaacgatg tcaaaagcgg cgttactgcc ttcatcaaca
    19561 atgggctgtt tcaccgtgct gtcagtgcga taatcgtaaa ccgatttcaa ggcgaactgc
    19621 ggacggagcc ccggcaatgc attggcaggc cagatagcct gctcagcgcg gcgcgtcacc
    19681 gggcgaccgc ccgattccag caaactgccc tggaaaataa cctgcaatgg ggaatgcgtt
    19741 tccttccact ggctttctgt agaaacttcg ccgcgccctt tatcatccag cgtcaactga
    19801 acttcatcca gcgtgcggga aaggttttcg gcagctatat cgccgaattc aaaaccaggt
    19861 aaggctgaca cagcctcacg cagtgggcgc aggaaaagtt gcccttgcaa agtattacca
    19921 ttagcaggcg caccgtacag gtagtatccc accacggaga atttcacttc atcattcggc
    19981 gtaagcgggg ttttctcacc ggtcagattc agcgccatac gctctggcat aaaatcttcg
    20041 acgtggaaat cccacatccg gtactggtta tcgcccgtgt tggcgcgaat atgccacata
    20101 ccggttgccg cattgctatc gagtggccag gtaaagtggt agaggccatt ctccggctga
    20161 ctaacgacgc tcctgagtac ctgcccgtca ggtttaatca cgtctaactt gatgggttga
    20221 tcgggcaatg ctttaccgtc tgcatcgcgc agtaaaccat tgaggattac cgtttcacct
    20281 gggcgataaa gatcgcgtgg gccaaacatg aaaaactgtt tgctatagcc tggcgcgcca
    20341 gcaatgttaa attctgctaa gtccagcgcc ggaagtttta aatcgagtag cgttgtctga
    20401 ccgtctttac gtgccagcag taatgccgca tttttatcat tttccagctg cacatgcccc
    20461 tgagcgtcac tggttgcctg agtcagagtc tgccctttct catttaataa agagacttca
    20521 attccttgct gggccgcgcc gttttccaga ctttgggtaa agatatccag acgattgtga
    20581 taacggtgag ctgaaacgcc gatatcactt aacgtaaaca gcgtcgcggg attactgtaa
    20641 tcgtaacgtc cagcctgatt catcacagcc agatacacgc ccgcctgctg aagcggtttg
    20701 atatcgccca gcggcagcaa taatttttca cgggtgttac gcgcaggatt gagatcaaac
    20761 cgtccggtgt agaccagatc cgccatctgc agcagtttgt ctgactgcca gttcgccagc
    20821 gaattgcggt attcccattg gctaatgaat gctggcagag attctggctt aacgcggaag
    20881 aagttaacat cgacattatt aacgttgagc gccattaccg gcagcccttc aacgactttg
    20941 ccaggcagca gcgaaccacg gctggcaaaa ccgacgctgg gttggatgtc gcgggtagtt
    21001 atagtttttt cgtaatcttt actgaaggtt gcattgttga gtgctttgac ctccttgcca
    21061 atagtaacga tcaaatcacg tttcggttcg aggtggcgta aacgtagctc tttaagatta
    21121 tctgacagct cccaggcacc atccactttg ccgctttttt tatcgacgac atgaataacg
    21181 cgtgagaaat cctgatccgg gtcgagaggg atggagaacg tcagcaccag cgtggctgca
    21241 ccatcaagtt ggacttcaga gagatccagc aatgtcagca ccttaccggc actctgttgg
    21301 gccagttttt gtctctccgg cacggagagt tttgctgaac tcgcgttttc tgaagaggcc
    21361 gctttagtaa cttcagaagg cgcatctttt ttcaccgctg ttggcgcgtt atcgttgttg
    21421 tcgcaccctg ccagcgccag cattagcatg caggcggcta cgcgtaactt tttcatccct
    21481 gccacaatgg cccgttagca acgtcgaata attattatgc gtgagaattt acgttatgta
    21541 attcagtatc acgcccatac aatccgaatt ttagtgagaa ttgtggctca gacagccaaa
    21601 tcagcctctt tcgcttgtcg cttttcacta aacatccgac aatttagcct aaccccggca
    21661 aaaatggaga tgcctatgtc cacgacatgg tttgtaggag ccgactggct cgccgaacat
    21721 attgatgacc cggaaattca gattatcgat gcccgcatgg cgtcgcctgg acaggaagat
    21781 cgtaacgttg ctcaggagta tctgaatgga catattcccg gcgcagtgtt ttttgatatc
    21841 gaagcgcttt ctgatcacac ttccccgctt ccgcacatgc tgccgcgccc gaaaacgttc
    21901 gccgtggcga tgcgtgaatt aggcgttaac caggataagc acctgattgt ctatgacgaa
    21961 ggtaatcttt tctcagcccc acgagcatgg tggatgctgc gcacctttgg tgtagagaaa
    22021 gtgtcgattc tggggggtgg acttgcaggc tggcagcgcg atgatctgct gttagaagaa
    22081 ggtgcagtag agctgccgga aggagagttt aacgccgcgt ttaatcctga agccgtggtg
    22141 aaagtaaccg atgtattatt ggcaagccat gaaaatacgg cgcaaattat tgatgcccgc
    22201 ccggctgcac gttttaacgc agaagttgat gaacctcgcc caggtttacg tcgcggacat
    22261 attcccggag cactgaatgt tccgtggacg gaactggtgc gcgaaggcga actaaaaacg
    22321 accgatgaac tggatgcgat attttttggt cgcggcgtca gctacgacaa accaattatc
    22381 gtcagctgcg gctctggtgt aacggcagcc gtggttttgt tagcactcgc gacgctggat
    22441 gtgccaaacg tgaaactgta cgacggcgca tggagtgaat ggggcgcgcg ggcagattta
    22501 ccggttgagc cagtgaaata agtattttac aggcaataaa aaaccgccga atttggcggt
    22561 tttttattgc tggtctggtt cgcggccttt ccagcaggtt gtattaccgt agtaatgcaa
    22621 gcgcgtctca gcggagacaa tactcgccag taactctctt tttgtcaagc aaaagagagt
    22681 tattattgtt ctgttagtat attatccact gcggcccttt ccgccgtctc gcaagcgggc
    22741 gctggcttaa ggaaaggatg ttccgcgacc gttagagcaa gcgcgtctca gcgcttgcta
    22801 tcgcggcaat atcgccagtg gtgctgtcgt gatgcggtct tcgcatggac cgcacaatga
    22861 agatacggtg cttctgtatc gtacttattg tttctggtgc gctgttttcc caagtaaata
    22921 ataaccggag tctctccggc gacaatttac tggtggttaa caaccttcag agcagcaagt
    22981 aagcccgaat gccgcccttt agggcggcat attttagatt atccggtttt gtttaaagtc
    23041 acgcaaaaaa cctccccagc gacgttcata gaatggcaca atatgttcgg taataaagtg
    23101 gctaattcct ttttcccctt ttttcacctg acaaatatcg attggttcat cgccaggtaa
    23161 tgtatcggtc gctacacttc ccgtcgcctg aataatttct tcgatatcac catcggcttc
    23221 aatgccaata aataaattag gctgtgcctc ttcgttctct ttaattgaac aaataaaagc
    23281 acgcttcacc ggcttaatgg ttttaaataa ggtggtgagt gaatcaatca tttgtgctgg
    23341 cggctctgca acttccgata atatcagcga ttcaccgcct tccaggattt cctggctgct
    23401 cagcggattt ccctcttcac caatcaacaa actgatttca cgcggcataa attctttacc
    23461 ggtcggcagt ttggcattaa ggaagagcgt ttcgccaagg gtcatctcaa acaatgtgcg
    23521 aacgggcatt acgacaaatg cctgttcgtc ttcaaccgcc tgttgaagcg cttctaacga
    23581 ggtgaaaaaa ggaatgacgc tggtgccgtc ttctttttcc cagtgctgta aatcaagcgc
    23641 actatcttca accacagcct cgccctgcgc cgccgtacca ggcacccaga cggtggattc
    23701 cagtagagta cggaaaaagg ccgggcggtg tgccggttcg gttgctgctt tttccagcag
    23761 gtcttcaagt tcgttttttg tttcggacat aagaaccaca attcattcaa cgttcggggc
    23821 gcaaatgcct gatgcgctac gcttatcagg cctacaaggg attcgcaatt tgttgaattt
    23881 gcagaatttg taggccggat aaggcgttta cgccgcatcc ggcatattag tttacgccgt
    23941 taacagatta gctatcgtgc gcacaccaag tcccgtagcg cccgcagacc actgttcaac
    24001 cggcgcttta cggtaagtcg ccgagcagtc gatatgcagc cagccttgct gatagttctc
    24061 aacaaagtgc gacaggaagc ccgccgccgt gctcgcgcct gccggatacg ccgcgcttcc
    24121 ggtattgttc agttcggcaa agttagacgg cagctggctg cggtggaatt ccgccagcgg
    24181 cagacgccag aatggttcgt tctcttgtga ggcactcgcc agcaaacgac cggcaagcgc
    24241 atcgtcaaaa ctgaacagcg cgtgataatc attacccagc gcagttttcg ccgccccggt
    24301 gagggtcgcc gcatcaatga tcatttccgg tttctgcgca ctggcatcaa tcagaccatc
    24361 ggcaagcacc agacgccctt cggcatcagt gttcatcact tcaacttttt taccgttgcg
    24421 ataggtgatg atatcgccca gcttgaacgc attgccgcta atcaggttat ccgcacagca
    24481 gaggaacagc ttcacgcgct tgttcagtcc gcgcgtaatg gcaaatgcca gcgccccggt
    24541 aaccgttgcc gcgccgccca tgtccgactt catcgagtcc ataaacgcag tctgtttgat
    24601 gctgtagccg ccggagtcaa aagtgatacc tttacctacc aggcacgcgt acactggcgc
    24661 ttctttatcg ccagttgggt tgtaatccag cgccagcaat accggagaac gttctgaagc
    24721 gcgtccgacg gtgtgcagcc ccatataacc ttgctcacgc agatcttcgc ctttggtgat
    24781 ccgataagtc acacgatcgc ccgcgacgtt gctgatcaga tcaacagcac gctgtgccag
    24841 ttgcgatggt cccaattctt ctgccggtgc gttgatggtg tcacgcaccc agtcgatgat
    24901 catcaggcgg ttatccagtt cctggcgctg ggcatcgtcc agatccggcc actccacttt
    24961 acgcgtgcct ttcggggctt tgtaaccttg ccagaatgcc cagcagcgat ccgcatccca
    25021 gccttcaccg cttaactgaa catgcttgat gcccagaccg tcaatcttgc gcgccgcacg
    25081 ctggatcagc cccagatcgt ctgccccgtt caaatgcagg gtaatgccgt cattattaat
    25141 gctgtaagtt gctttttctc cccagcgcgc gtcggcaggt tgggtagaga gggtaatctt
    25201 catcgcttct gtcattttag ttatccttct ttgtaaaagg gccgccagtt ggcagcccca
    25261 ggatttttcc gctaaatgat tcgcgttgca ggaaggcggc aagtgagtga agccccagga
    25321 gcatagataa ctatgtgact ggggtgaacg agcgcagcca acgcatctgc ggcgtgaagc
    25381 atgacgcgga aattattcgg cctcgtccag ccagactaac aaaatcgctt cgaggatttt
    25441 ctcgttggat gcctgcgggt cgtcgtcgaa atcttccaga tcgcaaatcc actgatgcat
    25501 atcggtgaat cgaaccgttt tcggatcaag atcaggatac gcatcgtaca gtgcttcgcc
    25561 aatttcgcgg ctatcggtcc acttaagtcc catactaacc tctgttaatg ctcacgcgca
    25621 tggttgatag tgtaacgcgg gatttcgact actaaatctt cgtcggtaac gcgtgcctgg
    25681 cagcttaaac ggctttcggg ctccagtccc caggctttgt ccagcatgtc gtcttcctgc
    25741 tctgagcttt ctggcagcga gtcaaaacct tcacgaacga tgcagtggca ggtggtgcaa
    25801 gcacaggatt tttcacaggc gtgttcaatc tcgataccgt tacgcagcgc tgcgtcgaga
    25861 atggtttcac cgctattagc ttccagaaca gcgccatcag ggcagaggtc ctgatgaggc
    25921 aaaataacaa tctttggcat attaaacctc gtccacggaa tggcctttca gcgcacgacg
    25981 aaccgactgg tccatgcggc gagcggcgaa atcctgggtt tgtttgtcta cgtttttaat
    26041 cgcttgttcg atggcgtcaa catcatcgcc ctgagccact tcactcaggt gagcggcagc
    26101 attgtcaatg acctgacgct ctgcggcgct taacagcgcg gcatcagcag ccagcgcgcc
    26161 gtgcagactt tccagcacac gcgccgcttc tactttttgt tctgccagca tacgggcttt
    26221 tacgtcctgc tcggcatagc tcattgaatc tttgatcatc gaagcgattt cgctatcggt
    26281 cagaccgtaa gaaggtttga cctgaataga cgcctcaacg ccggtggatt tctccatcgc
    26341 cgtcacgctc aaaagaccgt cggcatcgac ctggaacgtc acgcgaatat gcgcaccgcc
    26401 agccggtagc gccggaatac cacgcagcgc aaaacgcgcc agtgagcggc agtcctgcac
    26461 cagttcgcgc tcaccctgca ttacatggat agacatcgcc gtctgaccat ctttaaaggt
    26521 ggtgaaatcc tgagcgcggg ccaccggaat agtggtatta cgcggaatca ctttctccac
    26581 caggccgccc atcgtttcga ggcccagcga cagtgggatc acatcaagca gcagcatttc
    26641 gctgtccggc ttgttaccca ccagaatatc cgcctgaatc gccgcgccaa tagcgacgac
    26701 tttatccggg tcgatggaag tcagcggtgg acgaccgaaa aattcgccta cccgttcacg
    26761 caccagcggc acgcgagtag aaccgccaac catcaccact tccagcactt catcagcttc
    26821 tacgcccgcg tctttcagcg cacgacgaca agccagtaag gttcgtttta ccagtggcgc
    26881 gatcagttca ttgaattgtt cacggctgat ttcgccctgc cagcccgcaa cgttaacggt
    26941 cacggagtcc gcatcgctca gcgcgatttt ggctgcaatg gcggcatcca gcagttcacg
    27001 ctgaacgcgg ttatcgctac gatcaggaat gtccgcctgc tcgcgaatgt aatccgccag
    27061 cagatggtcg aaatcatcgc cgccgagcgc ggaatcaccg ccggttgcca gcacttcaaa
    27121 cacgccgcga cttaagcgca gaatggaaat atcaaacgtc ccgccaccga ggtcataaac
    27181 ggcgatcacg ccttcctgac cggaatccag cccgtaggcg atagccgcag cggtcggttc
    27241 gttaagtaag cgcagaacat gcaaccccgc cagacgcgcc gcgtctttgg tgccctgacg
    27301 ctgggcatcg tcaaagtacg ccggaacggt gataacgaca ccatccagct cgcctgccag
    27361 ggcttcagtt gcccgcgccg ccagtgcttt gaggatgtcc gcagaaacgc gcaccgggtt
    27421 cagcagcccc gccgccgttt caatcattgg caggccgttt tcgctggcct ggaattgata
    27481 aggcaaatgc ggatagcgtt gctggatatc agccagcgag cgtcccatca ggcgtttaac
    27541 agaactaatg gtgttggcgg tatcgagcgc tgcgttagta cgcgcgtcat aacccaccga
    27601 atgcccttgc tgttgatagt gaacaacaga tggcagcagg tgacggcctt catggtcggc
    27661 taacgtttcg gcctgaccgc tgcgcactgt cgctaccagc gagttggttg tgcccaggtc
    27721 aataccggcc gccagacgac gctgatgcgg cgcagcactc aaaccaggtt cactaatttg
    27781 taataaggcc atgtttagct tccagaaatt aaaaatcgag cagtttttct tcgagttgtt
    27841 cggcactgct tcgcagttta tcgagaaaac gcagcttacg cacggtatcc gccgccgcgt
    27901 cccacgtctc gttgtctaac tgttcaacca tcaactgatg gcgggtatca aacatctttt
    27961 tcacacgttt gataaagctt tccagccgcg cttcatcttt cgcctgttcg atctcgtcca
    28021 gttcttcgcg cagctccagc tgttccatca ggaacgcggt gtcgcgcaca gtatgctgct
    28081 cgctggcgag atcaaaaccg tgcaaagaaa gcaaatattc cgcgcgcatt aacggatgac
    28141 gcagcgtttg ccaggcctgg ttaatggttg cagattgctg tacggcggcg agttgttccg
    28201 cctggcttcc gctggcgaat ttatcaggat gatactgacg ttgtagatcc tgaaaacgca
    28261 ggctcagtgc ctgggtatcg agttgataac gggcaggcaa gccaaagagg gtgaagtaat
    28321 ccataacatt ctcagggctg cgatccgccg cgataacggc gaatcaggta aaacaaaccc
    28381 cacgcgcagg cgaccacggt ggggttatcg gtatgcgcat caaacgtgga agctttcgcc
    28441 gcaaccacac tcatctttaa cgttcgggtt ggtgaattta aacccttcat tcaggccttc
    28501 ttttacgaag tccagctgcg taccgtccag aaattgcagg cttttgccat cgaccacgac
    28561 tttcacgcct ttgtcttcaa acacgatgtc ttccggcgtc ggttcgtcaa caaattccag
    28621 tacataagcc atacctgaac atccggaggt tctcacgccc agacgcaggc caaacccttt
    28681 gccgcggtta gccagaaagg tatttactcg cgctgctgca ctgtcgctca gtgtaatcga
    28741 cataaccaaa cctcaactct tattttgctt cacgtttgct tttatagtcc gcaatggcgg
    28801 ctttgatcgc gtcttctgcc agaatagaac agtgaatttt caccggcggc agttcaagtt
    28861 cttcagcaat atcggtgttt ttgatcgcct gcgcttcgac gagagacttc cctttcaccc
    28921 attcggtgac cagggagctg gaagcgatag cagaaccgca gccgtaagtt ttaaaacgcg
    28981 cgtcttcaat gataccttca tcgttgactt taatctgcaa cttcatcacg tcgccacagg
    29041 ccggtgcacc caccatgccg ctgccgacgt tctcgtcgtt gttgtcaaag gaacccacgt
    29101 tacgcggatt ctcgtaatgg tcgataactt tttcgctgta agccattata aattctcctg
    29161 attccgatac cgattaatga tgagcccatt cgatgctgtt cagatccacg ccctgcttgt
    29221 acatttccca cagcggagaa aggtcacgca gacgaccgat ggatttacga actaactcga
    29281 tggtgtagtc gatctcttct tcagtagtaa aacgacctaa agagaaacgg atagagctat
    29341 gtgccagctc gtcgttcagc cccagcgcgc gcagcacgta ggacggttcg aggcttgctg
    29401 acgtacaggc ggaacctgaa gaaactgcga ggtctttcag cgccataatc agcgactcac
    29461 cttcaacgta gttgaagctg acgttgagaa tgttcggcgc accgtgttcc aggtcaccgt
    29521 tcaggtaaac ttcttcgata tctttgatgc cgttccacag acggttacgc aggccgcgca
    29581 gacgttccat ctcggtcgcc atctcttctt ttgcgatgcg ataggcctcg cccattccga
    29641 cgatctggtg aacaggcaga gtgccggaac gcataccgcg ctcgtgaccg ccgccgtgca
    29701 tttgcgcttc gatgcgtacg cgcggtttac gacgtacata cagcgcaccg atacctttcg
    29761 ggccatagat tttgtgaccg gagaaagaca tcaggtcaac tttcaactgg ctcaggtcga
    29821 taggcagttt gcccacgctc tgggttgcat caacgtgata gataatgcca cgagcacggc
    29881 acatttcgcc gatagccgcg atatcctgca ccacgccgat ttcgttattt acgtgcatga
    29941 tggaaacaag gatggtgtcg tcacgcatcg ctgcttcaag ttctttcagg tcgataatgc
    30001 cgttacgctg cggtgccagg taggtgactt caaaaccttc gcgctccagc tgacggcagg
    30061 tatccagtac cgctttgtgt tcggttttgc tagtgatgat gtgcttgcct tttttctgat
    30121 aaaagttggc tgcacctttg atcgccaggt tgtcagattc ggttgcacca gaggtaaaga
    30181 cgatttcacg cggatcagcg ccgaccagat cggcaatctg attacgggcg atatctaccg
    30241 cttcttcagc ctgccagccg aaacggtgag aacgagaggc cgggttacca aaggttccgt
    30301 ccatcgtcat gaactgcatc attttctcgg caacacgcgg gtccaccggc gtggttgcgg
    30361 agtagtcgag ataaatcggt aatttcattg ctctataaac tccgtacatc actcaatgca
    30421 aggaatcagg ctaccggctg gatgtacgac cgtgtttacg gagtatttag cactccggcc
    30481 tgattctgaa ttctttttat taagcgcgta acttaacgtc gatcgcgtct tgtgtgcggg
    30541 tgcgtggcgc gtcgtgagta tgctgacgac cagacacatc cagcacttcc tggttattaa
    30601 ccagttcgcc taaagtaatg ttgttgagaa aaccggtgag acggtcgctc aaatcacgcc
    30661 acagcgcgtg ggtcaggcat ttatcgccgc cctggcagcc gcctttaccc tgacaacggg
    30721 tggcatctac agattcgtca acggcgctaa tcacttcgcc aacggcgatg ctgctggcat
    30781 ctttgcctaa cagataacca ccgcctggtc cacgtacgct ggaaaccaga ccatttttac
    30841 gcagacggga aaacagttgt tccagataag aaagggaaat gccctgacgt tcggaaatat
    30901 cagccaacgg taccgggccc gcttcagagt tgagcgcaac gtcaagcatt gcggtcacgg
    30961 catagcgccc tttagatgtc agtctcatgt cttacttcac ctcaaactcg cccctgcccg
    31021 gggtttttta ttgtaaaagt gggggtattg aatagcaggg tcaagtctga cattcccgag
    31081 taaattggtc aactatttac ttgactgatt tagtcgggta tttaaccttc agtgccattt
    31141 ttttatcgtg gcgtttgtac ctgttgtcgg atgcggtgtg aacaccttat ccgacctacg
    31201 gttctgtaca ttgtaggcct gataagacgc gttaagcgtc gcatcaggca actactgtta
    31261 ttcggccttg ttacctttat tctgctgctc aatagaagcc agaatcccgc gcaggatatt
    31321 caattcctgg ctttccgggc gcgcacgggt aaacagacgg cgcaatttat tcatcacctg
    31381 ccccggatgg ttttcacgga taaaaccggt tgccagcagc gtttgttcca gatgaccata
    31441 aaaacgctcc agatcatcga ccagcggata cggcgtctct tcatgctcga cctgctcgcc
    31501 gttttcctga gttgccagcc aggccatgcg cacttcatag gcaataacct gaaccgccat
    31561 cgccaggttc agcgagctgt attccgggtt agccgcaatc gcgacatgat aatggcattt
    31621 ctgcaactct tcattggtca agccgacgcg ctcgcgacca aacaccagcg ccaccggggt
    31681 atttgccgct tcagcgacgc ttttcaggcc gcattcgcgc gggtcgagca tcggccatgg
    31741 cagcgtgcgg gaacgtgcgc tggtgcccac caccaagcta caaccggcta acgcttcgtc
    31801 gagcgtatcg acgatgtgag cattaccaat cacatcgctg gcccctgctg ccagggcaat
    31861 cgcctgggag tcgggtttca ccagtggatt aaccagccac agattggtta atcccattgt
    31921 tttcatggca cgggcaacag aacccatatt gccggtgtgt gacgtctcca ccagcacaat
    31981 tcgaatattt tgcagcattg tctttcttca tctaaagatt attcacgcat cttatcataa
    32041 aacgaagaca gatgccgatc tcgctgctat actctgcgcc gttttcccgt tctttaacat
    32101 ccagtgagag agaccgatgc atccgatgct gaacatcgcc gtgcgcgcag cgcgcaaggc
    32161 gggtaattta attgccaaaa actatgaaac cccggacgct gtagaagcga gccagaaagg
    32221 cagtaacgat ttcgtgacca acgtagataa agctgccgaa gcggtgatta tcgacacgat
    32281 tcgtaaatct tacccacagc acaccatcat caccgaagaa agcggtgaac ttgaaggtac
    32341 tgatcaggat gttcaatggg ttatcgatcc actggatggt actaccaact ttatcaaacg
    32401 tctgccgcac ttcgcggtat ctatcgccgt tcgtatcaaa ggccgcaccg aagttgctgt
    32461 ggtatacgat cctatgcgta acgaactgtt caccgccact cgcggtcagg gcgcacagct
    32521 gaacggctac cgtctgcgcg gtagcaccgc tcgcgatctc gacggtacca ttctggcgac
    32581 cggcttcccg ttcaaagcaa aacagtacgc cactacctac atcaacatcg tcggcaaact
    32641 gttcaacgaa tgtgcagact tccgtcgtac cggttctgcg gcgctggatc tggcttacgt
    32701 cgctgcgggt cgtgttgacg gtttctttga aatcggtctg cgtccgtggg atttcgcggc
    32761 aggcgagctg ctggttcgtg aagcgggcgg catcgtcagc gacttcaccg gtggtcataa
    32821 ctatatgctg accggtaaca tcgttgctgg taacccgcgt gttgtgaaag ccatgctggc
    32881 gaacatgcgt gatgagttaa gcgacgctct gaagcgttaa tgactcaggc gggtgatgtc
    32941 actcacccgc cctcgccttt caggcgctat tccgaaatac ttcctcaccg ctttactttc
    33001 tttcgtcact ctcccaccat ctttccccga ttaatggatg ataaagaagt cacaaggaaa
    33061 ggttatggcg ctgccagtga acaaacgcgt tctcaaaatt ctgtttattc tctttgttgt
    33121 tgccttctgc gtttatttag tgccgcgcgt tgccatcaac ttcttctatt atcctgacga
    33181 taaaatttac ggtcccgacc cctggtcggc ggaatccgtc gaatttacgg ctaaggacgg
    33241 tactcgtctg caaggctggt ttattccttc ttcgacgggc cctgctgaca atgccatcgc
    33301 aaccatcatt catgctcacg gcaatgccgg aaatatgtcc gcccactggc cgctggtcag
    33361 ttggttaccc gagcgtaatt tcaacgtttt tatgtttgat tatcgcgggt ttggtaaatc
    33421 aaaaggcacg ccgtcccagg ccggattgct ggacgatacg caaagtgcca tcaatgtggt
    33481 gcgccatcgc agtgatgtaa acccacaacg gctggtgctg ttcgggcaga gtattggcgg
    33541 ggcgaatatt cttgctgtta ttggtcagga tgatcgtgaa ggcatacgtg cggtgatcct
    33601 cgactccaca tttgcctctt atgcaaccat cgccaatcag atgatccccg gcagtggcta
    33661 cttacttgat gagagttaca gcggcgaaaa ttatatcgcc agcgtcagcc cgatcccgct
    33721 tttactcatt cacggtaaag ctgatcacgt tatcccatgg cagcacagcg aaaagttgta
    33781 tagcctggca aaagagacaa aacggttgat cctaatcccg gatggcgaac acattgatgc
    33841 tttttccgat cgtcacggcg atgtttatcg cgaacagatg gtggacttta tccttagcgc
    33901 gttgaatccg cagaactaac ccatgatcgc tagcacgata atcattcaca aaaccacctt
    33961 aagacatgct aatccactgg tcagaacagt ttaagatgag aaaaattctg tgacgcttgc
    34021 caacatttct gatgattagc attcccttcg ccatttacct gagcaaactt tagctattct
    34081 tatcaattat gcttatggga gatctacaga tgatgcctac gcttgctcca ccatctgtcc
    34141 tttcggctcc ccagcgccgc tgccagatct tgctgacgct ctttcagccg gggttgaccg
    34201 ccaccatggc aaccttcagc gagcttaatg gtgtggatga tgatattgcc agtcttgata
    34261 tcagcgaaac aggacgggag atcctgcgct atcatcaact cacactgacg actggttatg
    34321 acggtagcta ccgggttgaa ggtacagtgc ttaaccaacg tttgtgttta tttcactggc
    34381 tacgacgtgg tttccgtctg tgtccgtcat ttattaccag ccaattcacc cccgccctga
    34441 agagtgaact gaagcggcgc ggaattgcgc gtaactttta cgacgatacc aatctacaag
    34501 cgttagtgaa tctctgctcc cgacggctgc aaaaacgctt tgaaacgcgc gatattcatt
    34561 tcctgtgtct gtatctgcaa tattgtttgc tgcaacacca cgctggaatt acgcctcagt
    34621 ttaatccgct ccaacgtcgc tgggcggaat cctgccttga atttcaggta gcgcaggaaa
    34681 ttggacgcca ctggcagcgt cgggcgctcc agcctgtacc gcctgatgag ccactgttta
    34741 tggcattact tttttccatg ttgcgggttc ccgatccatt gcgtgatgcg catcagcgag
    34801 acagacaatt gcgtcagtct atcaaacgtc tggtaaacca ttttcgtgag ctgggaaatg
    34861 ttcgttttta tgatgaacag gggttatgcg atcagcttta tacccacctc gcccaggcgt
    34921 taaatcgcag tttgtttgcc atcggtattg ataataccct gccagaagag ttcgccaaac
    34981 tgtacccacg cctggtgcgc accacccgcg cggcgctggc cggatttgaa agtgaatacg
    35041 gcgtccatct ttctgatgag gaaagtggtc tggtcgcggt gattttcggt gcctggctaa
    35101 tgcaggaaaa cgatctgcat gaaaaacaga ttattcttct taccgggaat gatagcgagc
    35161 gagaagcgca gattgagcag cagttacgcg aactaacgtt actgccgctc aacattaaac
    35221 atatgtcggt aaaggcattt ttgcagacag gcgctccgcg cggcgcggca ctgattattg
    35281 cgccttatac catgccgtta ccgctctttt caccaccgct gatctatacg gacctgacac
    35341 tgacaacaca tcaacaggag cagatccgca aaatgctcga atcagcatga gggaacaact
    35401 ttcgggcgca aaaacattgc cggaagcgcc accagcgcca ttacccagaa cacgccgtgg
    35461 cccagatatt gatacaggaa accggcgaaa acggtcatga tagctatact gccgcccatc
    35521 gcgacggcag agtaaaccgc ctgtaaacgg atgacttcgc taccctggcg agcggcaata
    35581 tagcgcatgg cggccaggtg gcagaccgtg aaggcgccgc aatgcagaat ttgcaccact
    35641 atcaaccacg gcaacgccgt agttgctccc ataatgcccc agcgcactac gccgcaaatc
    35701 gccgagatca acagcatatc gcgtgcacta caacggcgga aaagtttatt actcagcgca
    35761 aagataatga cttccgccac cacgcccagc gaccacaaat accccaccgc cgaggccgag
    35821 tagccagctg cctgccagta aatggcgcta aaaccgtaat aggccgcatg tgccccctgc
    35881 aataaacaaa cgcaggccag aaagcgccag ttctgaagaa ccagcgccaa ccacgctgac
    35941 caaccggtgc tctcctgctg gcggcttgcc ccttgtggct gaatcgtcgg acggatgaga
    36001 aagccgagca gcatagatgc cacgcccaat gttaacagcg cgaggatcac ctgataatca
    36061 aacatagtga ccagtttgcc cgtcagcgcc gagccaatga caaacgccac cgagccccac
    36121 agtcgcactt tgccgtaatc aagcgggaac tgcttttgcc acgtattcgc cagtgcatcg
    36181 gtcaacggta ccagcggtga gaaaaagagg ttaaagccaa tcatcaccag catcagccac
    36241 gctacgtgcg cccccgccca gaaggcgaca gcaaagagaa gtgtcatcat tgccagcacg
    36301 cgcaaggcgg aaatcaggcg agaaggatcg ctgacgcggg gcgcgatgag caaactcccg
    36361 agaaaacggg caaccagacc tgcccccaat aacaggccga tggtttctgg cgttaaacca
    36421 atccctttaa gccagacgct ccagaaaggt agaaaaatgc cgtaactaaa aaagtatgtg
    36481 aaatagccga gcgccaacca gcgcgtggat tgcaaaacca tgagtccctc ccgtcaggag
    36541 gcgttagtct ggggttaatc gaatgttggt gcaagttgaa aaataagaat attcgagcct
    36601 gcttcccgat gtctgtaacg ccagttcaca agcactaaaa aactgcgatc cgcgacgcat
    36661 gttgcaaaaa taatgcgtaa ttatgccgtt acgcttgcca aacgttcctg cacaatggcg
    36721 atgaaatcgc gtaatgccgg cttcatctcc cctttcttcc acgccatcag taaagcaatg
    36781 gaaggcacat ttccggcaat gggacgaaaa acaacctgtc cggtattaaa attattcata
    36841 taaccgggta tcaaagtgac gcccagcccc atgcccacca gattcatggt caccagaata
    36901 ttcgttgcca cctggacgat atttggctgg ctgttttctt gcgcaaacca cgctttaacg
    36961 atcggcgcaa gcgaaccgga atacgccgga tcggtactga cgaaattcac gccatccagt
    37021 tgcgcggcgg tgatctcttt ttcatgtgct aaagggtgat caaccggtaa cacaaccact
    37081 aatggttcgt caaaaagctc cagataatca atctccgggc tataaacagg atggcgcatt
    37141 aagccgacgt cgagttcacc acggcgaatt ttttcctcct gttgcgtggt gattaaactc
    37201 accagctcaa tcaaggtgtc tggctgtctg agacgaaaca tcggtaatac ttttggcagt
    37261 aaattcactt ccgccgatgg cacaaagcca atggttaatt gtctgtcttc ctgaacagtt
    37321 ttccgcgccc gtaatttggc attttccgct tgttcgagga ttgccagcgc gtcctggaga
    37381 aaacattctc ccgccgccgt caacgcgact ttgcgcttat ccctcaccag taacggaaca
    37441 ccgacacagt tttcaagatc gcggatctgg ctgcttaacg aaggctgtga ggtatgcagt
    37501 ttttccgccg cacgggtaaa gttcagtgcc tgcgccactg cgacgaaata gcgtaaatgc
    37561 cgtagttcca tcaccttccc cttgttatcg aaaaaacgtc tcagctggta gaaattaact
    37621 atttcacata ttagcaacca accagcaaca tccttatggc acaaaaatag aaggtcaata
    37681 catcttatct ttcaggatta aaaaatatga ccacaccctc agatttgaac atttaccaac
    37741 tgattgacac ccaaaatggt cgggtcactc cgcgtattta taccgacccg gatatttacc
    37801 aactggagct tgagcgtatt ttcggtcgtt gctggctatt tctcgcccac gaaagccaga
    37861 tcccaaaacc cggtgatttc tttaacacct acatgggaga agatgcggtt gtcgtagtgc
    37921 gtcagaaaga cggcagcatc aaggcgtttc tcaaccaatg ccgccaccgg gccatgcgtg
    37981 tgagttatgc agattgcggc aacactcgcg cctttacctg cccgtatcac ggctggtctt
    38041 atggcattaa cggcgagttg atcgatgtac cgctggaacc tcgcgcctac ccacaagggt
    38101 tgtgtaaatc ccactggggg ctaaacgaag ttccttgtgt ggagagttat aaagggctga
    38161 tttttggcaa ctgggatacc agcgcaccgg gcctgcgtga ttaccttggt gacattgcct
    38221 ggtatctgga tggcatgctg gatcgtcgcg aaggcggcac cgaaattgtc ggcggcgtac
    38281 aaaagtgggt gatcaactgt aactggaaat ccccggcaga gcagttcgcc agtgaccaat
    38341 atcatgctct gttcagccat gcttctgccg ttcaggtatt aggggcgaaa gatgatggca
    38401 gcgataagcg tctcggtgat ggacaaaccg cccgcccggt gtgggaaacc gccaaagatg
    38461 cgctgcaatt tggtcaggac ggtcacggta gcggtttctt ctttactgaa aaaccggatg
    38521 ctaatgtctg ggtcgatggc gcggtttcca gctattaccg cgaaacctat gccgaagcag
    38581 aacaacgttt aggtgaagtt cgcgccctgc gcctggcggg tcataacaat atattcccca
    38641 cgctttcatg gctaaacggc actgccacac tccgcgtctg gcatccgcgc ggccctgatc
    38701 aagttgaagt gtgggcgttc tgtattactg acaaagccgc ctccgatgaa gttaaagccg
    38761 cttttgaaaa cagcgccact cgtgcttttg gtcctgctgg ttttctcgag caggatgact
    38821 cggagaactg gtgtgaaatc cagaaattgc ttaaaggcca ccgcgcccgc aacagcaaac
    38881 tgtgtctgga aatggggctt ggtcaggaaa agcgccgcga cgacggcatt cctggcatta
    38941 ctaactatat cttttcagaa actgccgctc gtggaatgta ccaacgctgg gccgatcttc
    39001 tgagtagcga aagctggcag gaagtgctcg ataaaaccgc cgcttaccag caggaggtga
    39061 tgaaatgagt gcgcaagttt cactagagtt acatctccgc attagccagt ttctctttca
    39121 cgaagccagc ttactggacg actggaaatt tcgtgactgg ctggcgcagc tcgacgaaga
    39181 gattcgttac accatgcgca ccacagttaa cgcgcaaaca cgcgaccgcc gcaaaggcgt
    39241 ccagccaccg acaacctgga tttttaatga caccaaagac cagctggagc ggcgaatcgc
    39301 ccgtctggaa acgggcatgg cctgggcaga agagccgccg tcacgcaccc gtcacttaat
    39361 cagcaactgc cagataagcg aaaccgacat cccaaacgta tttgctgtgc gggtaaatta
    39421 tctgctttat caggcacaaa aagagcgcga tgaaacattc tatgttggaa cgcgtttcga
    39481 caaagttcgc cgtctggaag atgacaactg gcgcttgctg gaacgggata tcgtcctgga
    39541 tcaagcggta atcacttccc ataacctgag tgtactgttc tgatgaatcg aatttatgcg
    39601 tgtcccgttg cggatgtgcc ggagggtgag gctctccgga tcgatacctc gcccgtcatc
    39661 gccctgttca acgttggcgg cgagttttat gccattaacg atcgttgcag ccatggtaat
    39721 gcgtcgatgt cagaagggta tctggaagat gacgccacgg tggagtgccc gctacacgcc
    39781 gccagttttt gcctgaaaac ggggaaagcg ttatgcctgc ccgccaccga tccgctcacc
    39841 acttatccag tacacgttga aggtagtgac attttcatcg acttaccgga ggcgcagcca
    39901 tgagcgatct gcataacgag tccattttta ttaccggcgg cggatcggga ttagggctgg
    39961 cgctggtcga gcgatttatc gaagaaggcg cgcaggttgc cacgctggaa ctgtcggcgg
    40021 caaaagtcgc cagtctgcgt cagcgatttg gcgaacatat tctggcggtg gaaggtaacg
    40081 tgacctgtta tgccgattat caacgcgcgg tcgatcagat cctgactcgt tccggcaagc
    40141 tggattgttt tatcggcaat gcaggcatct gggatcacaa tgcctcactg gttaatactc
    40201 ccgcagagac gctcgaaacc ggcttccacg agctgtttaa cgtcaacgta ctcggttacc
    40261 tgctgggcgc aaaagcctgc gctccggcgt taatcgccag tgaaggcagc atgattttca
    40321 cactgtcaaa tgccgcctgg tatcctggcg gcggtggccc gctgtacacc gccagtaaac
    40381 atgccgcaac cggacttatt cgccaactgg cttatgaact ggcaccgaaa gtgcgggtga
    40441 atggcgtcgg cccgtgtggt atggccagcg acctgcgcgg cccacaggcg ctcgggcaaa
    40501 gtgaaacctc gataatgcag tctctgacgc cggagaaaat tgccgccatt ttaccgctgc
    40561 aatttttccc gcaaccggcg gattttacgg ggccgtatgt gatgttggca tcgcggcgca
    40621 ataatcgcgc attaagcggt gtgatgatca acgctgatgc gggtttagcg attcgcggca
    40681 ttcgccacgt agcggctggg ctggatcttt aaggaagcac gatgaaagaa aaaacgatca
    40741 ttattgtcgg tggcgtgcaa gcggcggcaa tggctgcggc ctcgctacgc cagcaagggt
    40801 tcaccggtga gctgcatctg ttttccgatg agcgacatct tccttatgaa cgacctccac
    40861 tctcgaaatc catgttgctg gaagattccc cgcagttaca gcaggtgtta cccgctaact
    40921 ggtggcagga aaacaatgtt catctgcatt ccggtgtaac catcaaaacg ctgggtcgcg
    40981 acacacgaga gttagtgtta accaacggcg aaagctggca ctgggatcag ctttttatag
    41041 caaccggcgc ggcagctcga ccgctgccgt tgcttgatgc actgggagaa cgctgcttta
    41101 ccctacgcca tgccggtgat gccgccagac tgcgagaagt tctgcagccc gaacggtcag
    41161 tcgtgattgt cggtgccgga actattggtc tggaactggc tgccagcgcc acgcagcgca
    41221 gcgcagatgt aaggtgacag tgattgaact ggcggcaacc gtcatgggcc gtaatgcacc
    41281 accgcccgtg caacgctatc ttttacagcg ccaccagcag gctggtgtgc gcattctgct
    41341 caataatgcc attgaacatg tagtcgatgg tgaaaaagta gaactgacgc tgcaaagtgg
    41401 ggaaacgctt caggctgatg tggtgattta cggtattggt atcagcgcca acgagcaact
    41461 ggctcgcgag gccaaccttg atactgccaa tggcattgtc attgatgagg cttgccgcac
    41521 ctgcgatccc gcgatctttg ccggtggcga tgtggcaatc actcgtcttg ataatggtgc
    41581 actacaccgc tgtgaaagct gggaaaacgc caataaccag gcgcaaattg ccgctgccgc
    41641 aatgttaggg ctaccgctac cgctactgcc gtggttctgg agcgatcagt acagtgataa
    41701 cttacagttt attggcgata tgcgtgg
//
LOCUS       DAJVUP010000012        40935 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.012, whole genome shotgun sequence.
ACCESSION   DAJVUP010000012 DAJVUP010000000
VERSION     DAJVUP010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40935
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.012"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..334)
                     /locus_tag="OQQ75_000654"
     CDS             complement(<1..334)
                     /locus_tag="OQQ75_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS1975092.1"
                     /translation="MNKEEQYLLFALSAPMEILNQGCKPAHDSPKMYTGIKEFDLSSS
                     WGINNRDDLIQTIYQMTDDGHANDLAGLYLTWHRSSPEEWKALIAGGSERGLIYTQFV
                     AQTAMCCGE"
     gene            complement(415..1842)
                     /locus_tag="OQQ75_000655"
     CDS             complement(415..1842)
                     /locus_tag="OQQ75_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HCS1975093.1"
                     /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETEPQGFKQLRQ
                     AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNY
                     CSMEEIDELRWSLCTIAMNTAHLSFECVVLLAERLRWLQEENVGEIDEEELESFLYAI
                     AKGNVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPEWLTLYLAQHRAVIIPDDAKL
                     HRNLLRWYSAGRLDIPELLDYARSWREAEPDNEDARYYEYAQRVYCGEGESLLAELCD
                     YWREYPSTQADALILQWCRQHRVDYYPLVVMMIEARELVNDQGKQLLYVPGDSARTRF
                     HLYEILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHLLWPLYLVAKQLVQASQPT
                     EESLMPIVSRLDAEDRCPLEALIIRRLLIQAANFTEKQTVEPEPQPQPMPVDDGGPGC
                     LGVIKIIFYIFIFAGLIGKILHLFG"
     gene            complement(1839..2546)
                     /locus_tag="OQQ75_000656"
     CDS             complement(1839..2546)
                     /locus_tag="OQQ75_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS1975094.1"
                     /translation="MDMGSQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS
                     WGIDDRDDLLRTIHRMIENGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV
                     ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQ
                     YFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQP
                     LADYPTCPETLKDMSDL"
     gene            2709..3686
                     /locus_tag="OQQ75_000657"
     CDS             2709..3686
                     /locus_tag="OQQ75_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HCS1975095.1"
                     /translation="MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSP
                     DDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEHAIFWLKKTALQGHTFASN
                     ALGWILDRGEDPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYK
                     QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE
                     GVDQDYKQAMYWYLKAAAQESVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDA
                     TAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL"
     gene            complement(3756..4238)
                     /locus_tag="OQQ75_000658"
     CDS             complement(3756..4238)
                     /locus_tag="OQQ75_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon-containing protein"
                     /protein_id="HCS1975096.1"
                     /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELT
                     RTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR
                     EVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP
                     "
     gene            4473..7055
                     /gene="leuS"
                     /locus_tag="OQQ75_000659"
     CDS             4473..7055
                     /gene="leuS"
                     /locus_tag="OQQ75_000659"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008456064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HCS1975097.1"
                     /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP
                     SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY
                     DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP
                     NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKS
                     MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP
                     ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA
                     VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH
                     EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL
                     PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPEY
                     KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ
                     GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
                     NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA
                     KGDVAALNVDALTEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP
                     TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED
                     STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN
                     LVVG"
     gene            7070..7651
                     /gene="lptE"
                     /locus_tag="OQQ75_000660"
     CDS             7070..7651
                     /gene="lptE"
                     /locus_tag="OQQ75_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HCS1975098.1"
                     /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN
                     GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSITKDTASVFRNGQTAEYQMIM
                     TVNATVLIPGHDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
                     SIRAADIRSDEEQTSTTTDTPATPARVSTTLGN"
     gene            7651..8682
                     /gene="holA"
                     /locus_tag="OQQ75_000661"
     CDS             7651..8682
                     /gene="holA"
                     /locus_tag="OQQ75_000661"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HCS1975099.1"
                     /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA
                     QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG
                     LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL
                     ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV
                     DALLMGKSKRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH
                     RVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK
                     PLADVFIDG"
     gene            8684..9325
                     /gene="nadD"
                     /locus_tag="OQQ75_000662"
     CDS             8684..9325
                     /gene="nadD"
                     /locus_tag="OQQ75_000662"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HCS1975100.1"
                     /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP
                     HRPQPEANSVQRKHMLELAIANKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL
                     AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNQED
                     LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR"
     gene            9349..9959
                     /locus_tag="OQQ75_000663"
                     /pseudo
     CDS             9349..9959
                     /locus_tag="OQQ75_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415171.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin/alpha-ribazole phosphatase"
     gene            10219..10536
                     /gene="rsfS"
                     /locus_tag="OQQ75_000664"
                     /gene_synonym="rsfA"
     CDS             10219..10536
                     /gene="rsfS"
                     /locus_tag="OQQ75_000664"
                     /gene_synonym="rsfA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007373852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HCS1975101.1"
                     /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS
                     SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK
                     LWS"
     gene            10540..11007
                     /gene="rlmH"
                     /locus_tag="OQQ75_000665"
     CDS             10540..11007
                     /gene="rlmH"
                     /locus_tag="OQQ75_000665"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HCS1975102.1"
                     /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG
                     KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI
                     GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE"
     gene            11038..12939
                     /gene="mrdA"
                     /locus_tag="OQQ75_000666"
     CDS             11038..12939
                     /gene="mrdA"
                     /locus_tag="OQQ75_000666"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-transpeptidase MrdA"
                     /protein_id="HCS1975103.1"
                     /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI
                     VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL
                     DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG
                     YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL
                     HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT
                     DPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP
                     YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF
                     YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP
                     VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH
                     SGYWELAKDGMYGVANRPNGTTHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE
                     RLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN
                     PAVAAAEDH"
     gene            12942..14054
                     /gene="mrdB"
                     /locus_tag="OQQ75_000667"
                     /gene_synonym="rodA"
     CDS             12942..14054
                     /gene="mrdB"
                     /locus_tag="OQQ75_000667"
                     /gene_synonym="rodA"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="rod shape-determining protein RodA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase MrdB"
                     /protein_id="HCS1975104.1"
                     /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG
                     MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW
                     LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL
                     GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE
                     SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG
                     ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV
                     PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV"
     gene            14065..15153
                     /gene="rlpA"
                     /locus_tag="OQQ75_000668"
     CDS             14065..15153
                     /gene="rlpA"
                     /locus_tag="OQQ75_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic peptidoglycan transglycosylase RlpA"
                     /protein_id="HCS1975105.1"
                     /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS
                     GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD
                     PTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
                     NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP
                     VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPA
                     MVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP
                     FASKAEASTLQQRLQTEAQLQSFITTAQ"
     gene            15293..16504
                     /gene="dacA"
                     /locus_tag="OQQ75_000669"
     CDS             15293..16504
                     /gene="dacA"
                     /locus_tag="OQQ75_000669"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase DacA"
                     /protein_id="HCS1975106.1"
                     /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQI
                     DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGN
                     DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG
                     LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT
                     FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG
                     REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDMYLTIPRGRM
                     KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID
                     YIKLMFHHWFG"
     gene            16615..16878
                     /locus_tag="OQQ75_000670"
     CDS             16615..16878
                     /locus_tag="OQQ75_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HCS1975107.1"
                     /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT
                     PTVKPSSKGNYHSVSITINATHIEQVEILYEELGKIDIVRMVL"
     gene            16979..17620
                     /gene="lipB"
                     /locus_tag="OQQ75_000671"
     CDS             16979..17620
                     /gene="lipB"
                     /locus_tag="OQQ75_000671"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415163.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HCS1975108.1"
                     /translation="MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHY
                     PVFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELV
                     TLLEQTVVNTLAELGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL
                     SPFLRINPCGYAGMEMAKISQWKPEATTNNIAPRLLENILALLNNPDFEYITA"
     gene            17879..18832
                     /locus_tag="OQQ75_000672"
     CDS             17879..18832
                     /locus_tag="OQQ75_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HCS1975109.1"
                     /translation="MDSNNQIEPCLSRKSSEGKPQIFTTLRNIALNLLTIFEAVYVHK
                     GIVNAAKVLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLES
                     ILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQL
                     SQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLL
                     PEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWP
                     LEKLPFPSLNKEQIDFSIHYNKFSLRDPILHGVIDVIRNAF"
     gene            19041..20006
                     /gene="lipA"
                     /locus_tag="OQQ75_000673"
     CDS             19041..20006
                     /gene="lipA"
                     /locus_tag="OQQ75_000673"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HCS1975110.1"
                     /translation="MSKPIVMERGVKYRDADKMALIPVKNVAIEREALLRKPEWMKIK
                     LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD
                     VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS
                     PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL
                     ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ
                     RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK"
     gene            complement(20107..20310)
                     /gene="tatE"
                     /locus_tag="OQQ75_000674"
     CDS             complement(20107..20310)
                     /gene="tatE"
                     /locus_tag="OQQ75_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatE"
                     /protein_id="HCS1975111.1"
                     /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN
                     DDDAAAKKGADVDLQAEKLSHKE"
     gene            complement(20439..21227)
                     /locus_tag="OQQ75_000675"
     CDS             complement(20439..21227)
                     /locus_tag="OQQ75_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deaminated glutathione amidase"
                     /protein_id="HCS1975112.1"
                     /translation="MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLA
                     RDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAG
                     NIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQA
                     LQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPF
                     GVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL"
     gene            21320..21703
                     /gene="crcB"
                     /locus_tag="OQQ75_000676"
     CDS             21320..21703
                     /gene="crcB"
                     /locus_tag="OQQ75_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HCS1975113.1"
                     /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIG
                     AFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN
                     VFVNLLGSFAMTALAFWLFSASTAH"
     gene            complement(21758..21967)
                     /gene="cspE"
                     /locus_tag="OQQ75_000677"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             complement(21758..21967)
                     /gene="cspE"
                     /locus_tag="OQQ75_000677"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1975114.1"
                     /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL
                     AEGQRVEFEITNGAKGPSAANVIAL"
     gene            complement(22142..22702)
                     /gene="pagP"
                     /locus_tag="OQQ75_000678"
     CDS             complement(22142..22702)
                     /gene="pagP"
                     /locus_tag="OQQ75_000678"
                     /EC_number="2.3.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) palmitoyltransferase PagP"
                     /protein_id="HCS1975115.1"
                     /translation="MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAPTWQQ
                     PEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDS
                     WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGP
                     VTFQMTYIPGTYNNGNVYFAWMRFQF"
     gene            23291..24676
                     /gene="dcuC"
                     /locus_tag="OQQ75_000679"
     CDS             23291..24676
                     /gene="dcuC"
                     /locus_tag="OQQ75_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
                     /protein_id="HCS1975116.1"
                     /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI
                     MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV
                     VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG
                     AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW
                     QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI
                     CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ
                     SLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY
                     LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM
                     VPGTAAAVTGK"
     gene            complement(24717..25397)
                     /gene="dpiA"
                     /locus_tag="OQQ75_000680"
                     /gene_synonym="citB"
     CDS             complement(24717..25397)
                     /gene="dpiA"
                     /locus_tag="OQQ75_000680"
                     /gene_synonym="citB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator DpiA"
                     /protein_id="HCS1975117.1"
                     /translation="MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM
                     MIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF
                     DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID
                     PLTLNAVRKLFKEPGVQHTTETVAQALTISRTSARRYLEYCASRHLIIAEIVHGKVGR
                     PQRIYHSG"
     gene            complement(25366..27023)
                     /gene="dpiB"
                     /locus_tag="OQQ75_000681"
                     /pseudo
     CDS             complement(25366..27023)
                     /gene="dpiB"
                     /locus_tag="OQQ75_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308685.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
     gene            27372..28430
                     /gene="citC"
                     /locus_tag="OQQ75_000682"
     CDS             27372..28430
                     /gene="citC"
                     /locus_tag="OQQ75_000682"
                     /EC_number="6.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
                     /protein_id="HCS1975118.1"
                     /translation="MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTR
                     DEKLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYE
                     ALFRQCGFSTLTSVPGVMVLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNG
                     HRYLIQQAAAQCDWLHLFLVKEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISR
                     ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMR
                     YWLKTPTISAPPIELVEIERLRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQ
                     NLLEHSRQDAAARQKTPA"
     gene            28445..28741
                     /gene="citD"
                     /locus_tag="OQQ75_000683"
     CDS             28445..28741
                     /gene="citD"
                     /locus_tag="OQQ75_000683"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HCS1975119.1"
                     /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA
                     IRTTILDVLARYNVRGVQLNVDDKGTLDCILRARLEALLARASGIPTLPWEDCQ"
     gene            28738..29646
                     /gene="citE"
                     /locus_tag="OQQ75_000684"
     CDS             28738..29646
                     /gene="citE"
                     /locus_tag="OQQ75_000684"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HCS1975120.1"
                     /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE
                     DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL
                     PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI
                     ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA
                     AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEAAAREGLGVVSLNG
                     KMVDGPVIDRARLVLSRAELSGIREE"
     gene            29657..31189
                     /gene="citF"
                     /locus_tag="OQQ75_000685"
     CDS             29657..31189
                     /gene="citF"
                     /locus_tag="OQQ75_000685"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HCS1975121.1"
                     /translation="MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDR
                     KLCANLEEAIHRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSD
                     CHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI
                     DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASI
                     EQEQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
                     GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA
                     QSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRG
                     ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR
                     PELAERLQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV
                     KE"
     gene            31193..31743
                     /gene="citX"
                     /locus_tag="OQQ75_000686"
                     /pseudo
     CDS             31193..31743
                     /gene="citX"
                     /locus_tag="OQQ75_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308680.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
     gene            31718..32595
                     /gene="citG"
                     /locus_tag="OQQ75_000687"
                     /pseudo
     CDS             31718..32595
                     /gene="citG"
                     /locus_tag="OQQ75_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308679.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
     gene            32646..34109
                     /gene="citT"
                     /locus_tag="OQQ75_000688"
     CDS             32646..34109
                     /gene="citT"
                     /locus_tag="OQQ75_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/succinate antiporter CitT"
                     /protein_id="HCS1975122.1"
                     /translation="MSLAKDNIWKLLAPLVVMGVMFLIPVPNGMPPQAWHYFAVFVAM
                     IVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSST
                     TVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT
                     ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL
                     GLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDE
                     LKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITR
                     YNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAH
                     YLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIY
                     GCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN"
     gene            34220..35026
                     /gene="rna"
                     /locus_tag="OQQ75_000689"
     CDS             34220..35026
                     /gene="rna"
                     /locus_tag="OQQ75_000689"
                     /EC_number="4.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease I"
                     /protein_id="HCS1975123.1"
                     /translation="MKAFWRNAALLAVSLLPFSSANAVALQAKQYGDFDRYVLALSWQ
                     TGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFG
                     CATRPIPNLPEAHASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACF
                     GFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKL
                     TCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPSNCGKTFVIDKVGY"
     gene            35256..35666
                     /gene="rnk"
                     /locus_tag="OQQ75_000690"
     CDS             35256..35666
                     /gene="rnk"
                     /locus_tag="OQQ75_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HCS1975124.1"
                     /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC
                     SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR
                     VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL"
     gene            complement(35897..37135)
                     /locus_tag="OQQ75_000691"
     CDS             complement(35897..37135)
                     /locus_tag="OQQ75_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent formaldehyde
                     dehydrogenase"
                     /protein_id="HCS1975125.1"
                     /translation="MKALTYHGPHHVQVENVPDPGIEQADDIILRITATAICGSDLHL
                     YRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRMQQYA
                     ACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL
                     SDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVD
                     HHPYRLSFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTET
                     VLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT
                     HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQS
                     AEEAQKAVSGLVNAMPGGTI"
     gene            37356..37784
                     /gene="uspG"
                     /locus_tag="OQQ75_000692"
     CDS             37356..37784
                     /gene="uspG"
                     /locus_tag="OQQ75_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspG"
                     /protein_id="HCS1975126.1"
                     /translation="MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSA
                     SLSLDRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE
                     ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR"
     gene            complement(37905..39470)
                     /gene="ahpF"
                     /locus_tag="OQQ75_000693"
     CDS             complement(37905..39470)
                     /gene="ahpF"
                     /locus_tag="OQQ75_000693"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017455864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HCS1975127.1"
                     /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA
                     ELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPS
                     KEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQ
                     NEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIV
                     GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH
                     VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGE
                     DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA
                     DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG
                     LLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS
                     LSAFDYLIRTKTA"
     gene            complement(39641..40204)
                     /gene="ahpC"
                     /locus_tag="OQQ75_000694"
     CDS             complement(39641..40204)
                     /gene="ahpC"
                     /locus_tag="OQQ75_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HCS1975128.1"
                     /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT
                     FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG
                     ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS
                     HPGEVCPAKWKEGEATLAPSLDLVGKI"
     gene            40576..>40935
                     /gene="dsbG"
                     /locus_tag="OQQ75_000695"
     CDS             40576..>40935
                     /gene="dsbG"
                     /locus_tag="OQQ75_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415137.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HCS1975129.1"
                     /translation="MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGM
                     KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRME
                     QSHWLLDGKKDAPVIVYV"
BASE COUNT        10171 a        10467 c        10060 g        10237 t
ORIGIN      
        1 cttccccaca gcacatagcg gtttgggcaa cgaattgggt ataaatcaac cctctctccg
       61 agccaccagc aattaatgct ttccactctt caggggaaga gcgatgccat gtcagatata
      121 agccagctaa atcattggca tgaccatcat cagtcatctg ataaatagtc tgaattaaat
      181 catcacgatt atttattccc caggatgatg agagatcgaa ttcttttata ccggtataca
      241 tttttggcga gtcatgcgcg ggtttgcaac cctgattaag tatttccatg ggcgcagaaa
      301 gcgcaaaaag aagatattgt tcttccttat tcatttgtta ataatccctt aagtgcatta
      361 actgactact tttttatatt acttgccggg ctttccgcac attaacgtcg actgtcaccc
      421 gaacagatgg agtattttcc ctatcaaacc ggcaaagata aaaatgtaga aaataatttt
      481 gatgacgccc agacagcccg gcccaccatc gtcaacgggc attggctgcg gttgcggctc
      541 cggttcaaca gtttgcttct cggtaaaatt cgccgcctga attaataatc gacgaataat
      601 taatgcttcc agtggacaac gatcttctgc atcaagacgg cttacgatcg gcattaatga
      661 ttcttctgtc ggttggctgg cctgcactaa ttgtttggca actaaatata atggccataa
      721 gagatgttct gtatcacgcg tgagtgagat ccgcggctta cgtcctttgt gcaaaaccat
      781 ctcgaccagt gaacgcccca gcgcagagag tttttcatcg ctgagtattt cgtataaatg
      841 aaaacgcgta cgggcgctgt cgccggggac ataaagtagc tgtttaccct gatcgttaac
      901 cagttcacga gcttcaatca tcatcaccac taacgggtaa taatcgaccc gatgctgacg
      961 gcaccattgc aatattaaag catccgcctg ggtggaggga tactcgcgcc agtagtcaca
     1021 aagttctgcc agcaagcttt cgccttctcc acaatagacg cgttgcgcgt attcataata
     1081 acgcgcatct tcattatcag gttcagcttc ccgccacgac cgggcgtaat ccagaagttc
     1141 ggggatatcc aggcgacctg cgctatacca gcggagtaaa tttctgtgca gttttgcatc
     1201 atcggggatg atcactgcgc gatgttgcgc taaatacaat gtcagccatt ctggatgcga
     1261 tgaccaaatc cgagcgaaca tttggtaaaa atcgatggtg tcattttgca cggcaacggg
     1321 cagatgcaga atggtctgga agttaaaaac attccccttc gcaatggcat ataaaaagga
     1381 ttccagttct tcttcgtcta tttccccgac gttttcctcc tgcaaccacc gcaatctttc
     1441 tgctaataac accacgcact cgaaggataa atgggcagtg ttcatggcga ttgtgcacag
     1501 cgaccagcgt aattcatcaa tctcttccat cgagcaataa tttaattgct gaatgaatcg
     1561 ctgccaggcg gagggcagaa aacgttcgct atcagaggca agtaacgcgc gaaaggcgag
     1621 cagaatttca tgttctgcta cctcatattc ttctggttgc caaacagatt tagcaggcga
     1681 ctgcgcaatc cgtagcgcct cctcatacgc ctgacgaagt tgtttaaaac cctgcggttc
     1741 ggtttctgga tgaaaggacg gtaacagcgc cagataagcg cggcggataa tatcgacgtc
     1801 agtcgtttcc tctatatcga ggatcttcca gcaatttttc ataagtcgct catatcctta
     1861 agcgtttccg ggcatgtggg gtagtcagcc agtggttgcc aggacaaggt agggtaatac
     1921 gcatcatcac tggcaaataa ttgataaaac atatcattgc cggaatcgtc gtattcttta
     1981 cgcgctaaga attcgcgtaa taaaggcaga tgatcatctt cgggagactg ccaatattgc
     2041 cgaccaaagg tataaccggc aaagtattgc cgccagttac tataataacg tagagcccgt
     2101 agatgaatac gcgactggat ccatagactt tcttcttcac tcaaccagtt attaagtacg
     2161 cccattcgac ttaaaaaacc catccggaca taatcccatg ctttaattcc tccctcacca
     2221 cagcattcgg ctgtgctggc gacaaattgc gcataagcct gaccttgctc atttaattca
     2281 gcaagatagt cacgccattc acatggagaa taacgaaacc agcggtgata aaaccctgcc
     2341 aaccgagcgg catgaccgtt ctcgatcatt cggtgaattg tgcgcagcag gtcatcacgg
     2401 tcatcaattc cccatgagga agaaaggtca aaaaagcatg tacctaaata cattttgggg
     2461 gatgaatgcg aaggtaaaca gcattcattg cgtatttcca tcggagtgga aagtgcaaac
     2521 aatatttttt gcgaccccat gtccatataa tttatcctta aacattcatt taatgaatgt
     2581 aaactacatt tcgagactca gttatttata cttttctgac gcgacataat acgcataaaa
     2641 taaggcttac gcaaaaatgg aacacataaa atataatatg ttttatctac aaccataagg
     2701 aaatgataat gatttttacg tcaagttgct gcgataattt atcaatagat gagattatcg
     2761 aacgtgctga aaaaggcgat tgcgaggctc aatatattgt tgggttttat tataatcgcg
     2821 atagcgcaat tgactctccg gacgacgaaa aggcctttta ctggctgaag ctggccgccg
     2881 agcaaggtca ttgtgaagca caatattcct taggacaaaa gtatactgag gataaaagcc
     2941 gtcataaaga taatgagcat gccatctttt ggctgaaaaa aactgcccta caaggccata
     3001 ctttcgcttc caacgccctt ggctggatac tggatcgtgg agaagacccc aattataaag
     3061 aagcggttgt ctggtatcag atagccgcgg agagcggaat gtcttatgcg caaaataatc
     3121 ttgggtggat gtacagaaat ggcaacggag tcgcaaaaga ctatgcgctg gcatttttct
     3181 ggtacaaaca agctgcatta caaggccata gtgacgcgca aaacaatctg gccgatcttt
     3241 atgaagacgg aaaaggcgtt gctcaaaaca agacactcgc cgcattctgg tatttgaaaa
     3301 gcgcacagca gggtaatcgg cacgcccagt ttcaaattgc atgggattat aacgctggcg
     3361 aaggggtgga ccaggactat aagcaagcga tgtactggta tctgaaggct gccgctcagg
     3421 aaagcgtcgg cgcttacgtc aacatcggtt atatgtataa acacggacaa ggcgttgaga
     3481 aagattatca ggctgccttt gaatggttta cgaaagccgc tgaatgcaat gacgccactg
     3541 cctggtataa cctggccatt atgtatcact acggagaagg aagacctgtc gatctccgac
     3601 aggctctcga cctgtatcgt aaagttcagt catccggaac cagagatgtc agtcaggaaa
     3661 ttcgtgagac tgaagattta ctgtagagat aaaaacaagg gccggggaat ttcattcggc
     3721 ccatattctc tttattgctg tgcgaaatca gactattacg gctcaaacgg gcgtctctgg
     3781 aactggtcat gaccacattt cgggcatagc gtcagcactt ccggtgtgta gatcgggaga
     3841 tggaagtgac atttctcgca gaccagattt cccagcccga ccacttctcc gctgtgataa
     3901 accccatgat gattgaggtc ctggaaaact tcgcgccatt caagctgcgt tttatcggtg
     3961 atatctgcca gctcctgcca taagctttct ttaatcaccc gcataaagac gctgtcagat
     4021 tcttctttca ggctctcttc atagctcatg gcgaactctt ccaggtcacg tcttacagct
     4081 cgcgtcagct catcgacctc ggttcgcgtt aactcccctg tttttattac gcgctcgcgc
     4141 gcctgttcca ccagtgcgtc gatatcacgt tcgccattgc gcaggcgttc gctcagtgac
     4201 gcgaccagtt cacggtaata ttgagcaacc ttgttcatcg tttcatctcc cgggtcgtta
     4261 actgactata ataatagacg ttctttgttc cttgctttgc taatacgccc acaaactctg
     4321 taaattaatg tatgaataat ccgggcatca tttcaacgtc gagtgcgcga aaggctgttt
     4381 tgacgcggac gtttgggcta tgctatgcgg atctgaaaaa ccacctcaac gctacatttg
     4441 tagccgtatt gaaaacagga ccactggctg ccatgcaaga gcaataccgc ccggaagaga
     4501 tagaatccaa agtacagctt cattgggatg agaagcgcac atttgaagta accgaagacg
     4561 agagcaaaga gaagtattac tgcctgtcta tgcttcccta tccttctggt cgactacaca
     4621 tgggccacgt acgtaactac accatcggtg acgtgatcgc ccgctaccag cgtatgctgg
     4681 gcaaaaacgt cctgcagccg atcggctggg acgcgtttgg tctgcctgcg gaaggcgcgg
     4741 cggtgaaaaa caacaccgct ccggcaccgt ggacgtacga caacatcgcg tatatgaaaa
     4801 accagctcaa aatgctgggc tttggttatg actggagccg cgagctggca acctgtacgc
     4861 cggaatacta ccgttgggaa cagaaattct tcaccgagct gtataaaaaa ggcctggtat
     4921 ataagaagac ttctgcggtc aactggtgcc cgaacgacca gaccgtactg gcgaacgaac
     4981 aagttatcga cggctgctgc tggcgctgcg ataccaaagt tgaacgtaaa gagatcccgc
     5041 agtggtttat caaaatcact gcttacgctg acgagctgct caacgatctg gataaactgg
     5101 atcactggcc agacaccgtt aaaagcatgc agcgtaactg gatcggtcgt tccgaaggcg
     5161 tggagatcac cttcaacgtt aacgactatg acaacacgct gaccgtttac actacccgcc
     5221 cggacacctt tatgggttgt acctacctgg cggtagctgc gggtcatccg ctggcgcaga
     5281 aagcggcgga aaataatcct gaactggcgg cctttattga cgaatgccgt aacaccaaag
     5341 ttgccgaagc tgaaatggcg acgatggaga aaaaaggcgt cgatactggc tttaaagctg
     5401 ttcacccatt aacgggcgaa gaaattcccg tttgggcagc aaacttcgta ttgatggagt
     5461 acggcacggg cgcagttatg gcggttccgg gtcacgacca gcgcgactac gagtttgcct
     5521 ctaaatacgg cctgaacatc aaaccagtta tcctggctgc tgacggctct gagccagatc
     5581 tttctcagca agccctgact gaaaaaggcg tgctgttcaa ctctggcgaa ttcaacggtc
     5641 ttgaccatga agcggccttc aacgccatcg ccgataaact gactgcgatg ggcgttggcg
     5701 agcgtaaagt gaactaccgc ctgcgcgact ggggtgtttc tcgtcagcgt tactggggcg
     5761 cgccgattcc gatggtgacg ctggaagacg gtaccgtaat gccgaccccg gacgaccagc
     5821 tgccggtgat cctgccggaa gatgtggtga tggacggcat taccagcccg attaaagcag
     5881 atccggagtg ggcaaaaact accgttaacg gtatgccagc gctgcgtgaa accgacactt
     5941 tcgacacctt tatggagtcc tcctggtact atgcgcgcta cacttgccca gagtacaaag
     6001 aaggtatgct ggattccgaa gcggctaact actggctgcc ggtggatatc tacattggtg
     6061 gtatcgaaca cgccattatg cacctgctct acttccgctt cttccacaaa ctgatgcgtg
     6121 atgcaggcat ggtgaactct gacgaaccag cgaaacagtt gctgtgtcag ggtatggtgc
     6181 tggcagatgc cttctactat gttggcgaaa acggcgaacg taactgggtt tccccggttg
     6241 atgctatcgt tgaacgtgac gagaaaggcc gtatcgtgaa agcgaaagat gcggcaggcc
     6301 atgaactggt ttataccggc atgagcaaaa tgtccaagtc gaagaacaac ggtatcgacc
     6361 cacaggtgat ggttgaacgt tacggcgcgg acaccgttcg tctgtttatg atgtttgctt
     6421 ctccggctga tatgactcta gaatggcagg aatccggtgt ggaaggggct aaccgcttcc
     6481 tgaaacgtgt ctggaaactg gtttacgagc acacagcaaa aggtgatgtt gcggcactga
     6541 acgttgatgc gctgactgaa gatcagaaag cgctgcgtcg cgatgtgcat aaaacgatcg
     6601 ctaaagtgac cgatgatatc ggccgtcgtc agaccttcaa caccgcaatt gcggcgatta
     6661 tggagctgat gaacaaactg gcgaaagcac caaccgatgg cgagcaggat cgcgctctga
     6721 tgcaggaagc gctgctggcc gttgtccgta tgcttaaccc gttcaccccg cacatctgct
     6781 tcacgctgtg gcaggaactg aaaggcgaag gcgatatcga caacgcgccg tggccggttg
     6841 ctgacgaaaa agcgatggtg gaagactcca cgctggtcgt ggtgcaggtt aacggtaaag
     6901 tccgtgccaa aatcaccgtt ccggtggacg caacggaaga acaggttcgc gaacgtgctg
     6961 gccaggaaca tctggtagca aaatatcttg atggcgttac cgtgcgtaaa gtgatttacg
     7021 taccaggtaa actcctcaat ctggtcgttg gctaagcgcg ggaggaagcg tgcgatatct
     7081 ggcaacattg ttgttatctc tggcggtgtt aatcaccgcc gggtgtggct ggcatctgcg
     7141 tgataccacg caggttcctt ccactatgaa ggtcatgatc ctggactcag gcgatccgaa
     7201 cgggccatta agccgtgcgg tgcgtaacca gttacgtctg aatggtgtcg agttgcttga
     7261 taaagaaacc acgcgtaagg acgttccatc cctgcgtttg ggtaaagtga gcatcacgaa
     7321 agataccgca tcggtattcc gtaacggtca aacagcagag tatcagatga tcatgacggt
     7381 gaatgcgacc gtgttgatcc ccggccatga tatctacccg attagcgcca aagtcttccg
     7441 ttcgttcttt gataacccgc aaatggcgtt agcgaaagat aacgaacaag acatgatcgt
     7501 aaaagagatg tacgaccgtg ctgccgaaca gctgattcgt aagctgccaa gcatccgtgc
     7561 tgcggatatt cgttccgacg aagaacagac gtcgaccaca acggatactc cggcaacgcc
     7621 tgcacgcgtc tccaccacgc tgggtaactg atgattcggt tgtacccgga acaactccgc
     7681 gcgcagctca atgaagggct gcgcgcggcg tatcttttac ttggtaacga tcctctgtta
     7741 ttgcaggaaa gccaggacgc tgttcgtcag gtagctgcgg cacaaggatt cgaagaacac
     7801 cacacttttt ccattgatcc caacactgac tggaatgcga tcttttcgtt atgccaggct
     7861 atgagtctgt ttgccagtcg acaaacgcta ttgctgttgt taccagaaaa cggaccgaat
     7921 gcggcgatca atgaacaact tctcacactc accggacttc tgcatgacga cctgctgttg
     7981 atcgtccgcg gtaataaatt aagcaaagcg caagaaaatg ccgcctggtt tactgcgctt
     8041 gcgaatcgca gcgtgcaggt gacctgtcag acaccggagc aggctcagct tccccgctgg
     8101 gttgctgcgc gcgcaaaaca gctcaactta gaactggatg acgcggcaaa tcaggtgctc
     8161 tgctactgtt atgaaggtaa cctgctggcg ctggctcagg cactggagcg tttatcgctg
     8221 ctctggccag acggcaaatt gacattaccg cgcgttgaac aggcggtgaa tgatgccgcg
     8281 catttcaccc cttttcattg ggttgatgct ttgttgatgg gaaaaagtaa gcgcacattg
     8341 catattcttc agcaactgcg tctggaaggc agcgaaccgg ttattttgtt gcgcacatta
     8401 caacgtgaac tgttgttact ggttaacctg aaacgccagt ctgcccatac gccactgcgt
     8461 gcgttgtttg ataagcatcg ggtatggcag aaccgccggg gcatgatggg cgaggcgtta
     8521 aatcgcttaa gtcagacgca gttacgtcag gccgtgcaac tcctgacacg aacggaactc
     8581 accctcaaac aagattacgg tcagtcagtg tgggcagagc tggaagggtt atctcttctg
     8641 ttgtgccata aacccctggc ggacgtattt atcgacggtt gatatgaaat ctttacaggc
     8701 tctgtttggc ggcacctttg atccggtgca ctatggtcat ctaaaacccg tggaaacgct
     8761 ggcgaatttg attggtctga cgcgggtcac aatcatccct aataatgttc ctccgcatcg
     8821 tccccagccg gaagcgaaca gcgtgcagcg taaacacatg cttgaactgg cgattgccaa
     8881 caagccatta tttactcttg atgaacgcga gctaaagcgc aatgccccct cttacactgc
     8941 gcaaacactg aaagagtggc ggcaggaaca aggaccggac gtgccgctgg cgtttattat
     9001 tggtcaggat tcactgctga cctttccgac ctggtacgaa tacgaaacga tactcgacaa
     9061 tgcacatttg atcgtctgtc ggcgtccagg ttacccactt gaaatggcgc aaccgcaata
     9121 ccagcaatgg ctggaagatc atttgacaca taaccaggaa gatcttcacc ttcagcctgc
     9181 cggtaaaatt tatctggctg aaacgccgtg gtttaacatc tcggcgacca tcatccgcga
     9241 acgtttgcaa aacggtgaat cgtgtgagga tttattgccg gaaccggtac tgacttacat
     9301 taaccaacaa ggcttgtatc gctgatacct gtcgttacgg agggcatgat gcgactgtgg
     9361 ttaattcgtc atggtgaaac gcaagcgaat atcgatggtc tttacagcgg tcatgcgccc
     9421 cccccctgac cgcgcgcggt attgagcaag cgcaaaatct gcatacgctg ctacatggtg
     9481 tttcctttga tctggtttta tgcagtgaac tggaacgggc acagcatacc gcgcgactgg
     9541 ttctcagtga ccgccagctc cccgtgcaaa tcatccctga actcaacgaa atgttttttg
     9601 gcgactggga gatgcgacat catcgcgacc tcatgcaaga agatgccgaa aactatagcg
     9661 cgtggtgcaa tgactggcag catgcaatcc ccacgaacgg tgaaggattt caggcatttt
     9721 cgcaacgtgt ggaacgcttt atcgcaaggc ttagtgaatt tcagcactat cagaatattt
     9781 tagtcgtcag ccatcagggt gtactgagtc tgttaatcgc ccgtttaatt ggcatgcctg
     9841 ccgaggctat gtggcatttt cgcgttgacc aggggtgttg gagcgccatt gatatcaacc
     9901 aaaaattcgc gacgctacgc gtcctcaata gccgtgccat cggggtcgat aatgcatgac
     9961 ttttctgttt ttttacgggt aagccgcaac gaccattgac agacccgggc aggctgatat
    10021 tctccgcagc cagacttttt tcgccagaca cgactttgta gaaattgttt tacaaaaatg
    10081 gcgatgcaat ctgcggcgcg gggtgggatg atagcccact ttcgaaagcc gattcggcga
    10141 caattgtccc gaaatcgcct ctggttcagg tatactgaca gaccattttt atctatttga
    10201 ttcacccagg gggaaaactt gcagggtaaa gcactccagg attttgttat cgacaaaatt
    10261 gatgacctca aaggtcagga catcatcgcc ttagacgttc aaggcaaatc cagcatcacc
    10321 gactgcatga tcatctgtac gggtacgtcc agccgtcatg ttatgtccat tgctgaccac
    10381 gttgtgcagg agtctcgcgc agcgggcctg ttaccgctcg gcgtagaagg tgaaaacagc
    10441 gccgactgga ttgtcgtgga tttgggcgat gtgattgtcc atgtcatgca ggaagagagc
    10501 cgtcgcctgt atgaactgga aaaactctgg agttaatgcg tgaagctgca acttgtcgcc
    10561 gtgggaacga aaatgccgga ctgggtacaa accggtttta ccgagtacct gcgtcgtttt
    10621 ccgaaagata tgcccttcga gctgattgaa attccggccg gaaaacgcgg caagaatgcg
    10681 gacatcaagc gcatactcga caaagagggt gagcagatgt tggcggccgc aggcaaaaac
    10741 cgcattgtca ccctcgatat tccaggcaag ccctgggata cgccgcagtt agccgctgag
    10801 ctggaacgct ggaagctgga tggtcgcgac gtcagtctac tgattggcgg gcctgaaggg
    10861 ttgtcgcctg cctgtaaagc ggcggcggag cagagctggt cgctgtcggc gcttaccctc
    10921 ccccatccgc tggttcgcgt gctggtcgca gagagtctgt accgggcgtg gagcatcacc
    10981 accaaccatc cttatcaccg tgagtgataa gggagctttg agtagaaaac gcagcggatg
    11041 aaactacaga actcttttcg cgactatacg gcagagtccg cgctgtttgt gcgccgggcg
    11101 ctggtcgcct ttttggggat tttgctgctg accggcgtgc ttatcgccaa cctgtataat
    11161 ctgcaaattg ttcgctttac cgactaccag acccgctcta atgaaaaccg cattaagctg
    11221 gtgcctatcg cgcccagccg cggcattatt tacgaccgta atggtatccc tctggccctc
    11281 aaccgcacta tctaccagat agaaatgatg ccagagaaag tcgataacgt gcagcaaacg
    11341 ctggacgctt tgcgcagcgt ggttgatctg accgatgacg atattgctgc attccgaaaa
    11401 gagcgcgcac gttcacaccg tttcacctct attcccgtga aaactaacct gaccgaagta
    11461 caagtagctc gctttgccgt caatcagtac cgttttccgg gggttgaagt taaaggctat
    11521 aaacgtcgtt actatcctta cggttcggcg ttgacccacg tcatcggcta tgtgtcgaaa
    11581 atcaacgata aagacgtcga acgcctgaat aatgacggca aactggccaa ctatgcggca
    11641 acgcatgata tcggtaagct gggcattgag cgttactatg aagacgtgct gcacggtcag
    11701 accggttatg aagaggttga agttaacaac cgtgggcgtg ttatccgcca gttaaaagaa
    11761 gtaccaccgc aagccggaca cgatatttac ctgacgctgg atctcaaact ccagcaatat
    11821 attgaaacgc tgctggcggg tagccgcgca gctgtggtag tcaccgatcc gcgtacaggt
    11881 ggggtgctgg cgctggtttc cacgcctagt tatgacccaa acttgtttgt tgacggtatc
    11941 tccagcaaag attattccgc cttgttgaac gacccgaata caccgctggt gaaccgcgcc
    12001 acacaggggg tttatcctcc cgcgtctaca gttaaaccct atgtggcggt ttcggcattg
    12061 agcgccgggg tgatcacgcg caatacgacg ctgtttgacc caggctggtg gcaactgcca
    12121 ggttcggaaa aacgttatcg tgactggaaa aaatggggcc acgggcgtct gaatgtcaca
    12181 agatcgctgg aagaatctgc ggataccttc ttctatcagg tggcctacga tatggggatc
    12241 gatcgcctct ccgaatggat gggtaaattc ggttatggtc attacaccgg tatcgacctg
    12301 gcggaagaac gttccggcaa catgcctacc cgcgaatgga aacagaaacg ctttaaaaaa
    12361 ccgtggtatc agggtgacac cattccggtt ggtatcggtc agggttactg gacagcgacc
    12421 ccaatccaga tgagtaaggc actgatgatc ctgattaatg acggtatcgt gaaggttccg
    12481 catttgctga tgagcaccgc cgaagacggc aaacaggtgc catgggtaca accgcatgaa
    12541 ccgcccgtcg gcgatattca ttccggttac tgggagctgg cgaaagacgg tatgtacggt
    12601 gttgctaacc gccctaacgg tacgacgcat aaatactttg ccagcgcacc gtacaaaatt
    12661 gcggcgaaat ctggtaccgc tcaggtcttc ggtctgaaag cgaacgaaac ctataatgcg
    12721 cacaaaattg ccgagcgttt acgtgaccac aaactgatga ccgcctttgc gccatacaac
    12781 aatccgcaag tggctgtcgc catgattctg gagaacggcg gcgcgggtcc ggcggttggt
    12841 acgctgatgc gtcagatcct cgaccacatt atgctgggtg ataacaacac cgatctgcct
    12901 gcggaaaatc cagcggttgc cgcagcggag gaccattaat catgacggat aatccgaata
    12961 aaaaaacatt ctgggataaa gtccatctcg atcccacaat gctgctgatc ttactggcat
    13021 tgctggttta cagcgcccta gttatctgga gcgccagcgg tcaggatatt ggcatgatgg
    13081 agcgtaaaat cggccaaatc gcgatgggtc tggtcatcat ggtggtgatg gcgcaaattc
    13141 ctccacgcgt ttatgaaggc tgggccccct atctctatat catctgtatt attttgctgg
    13201 tggcggtaga tgctttcggt gccatctcta aaggtgctca acgctggctg gacctcggta
    13261 ttgttcgttt tcagccgtcg gaaattgcca aaatagccgt accactgatg gttgcgcgct
    13321 ttatcaaccg cgacgtttgc ccaccgtcgt tgaagaacac aggcatcgcg ctggtgctga
    13381 tatttatgcc cacgctgctg gtggctgcac agcctgacct gggaacatca atcctcgttg
    13441 cgctttccgg tctgtttgta ctgttcctct ctggccttag ctggcgtctg attggcgtcg
    13501 cagtagtgct ggtggcggcg ttcattccta ttctgtggtt cttcctgatg catgattacc
    13561 agcgccagcg cgtaatgatg ctcctagacc cggaatcaga cccactcggc gcgggctatc
    13621 acattattca gtctaaaatt gctattggct ccggcggatt acgcggcaaa ggctggctgc
    13681 atggcactca gtcacaactt gaatttctac ccgaacgcca taccgacttt atcttcgcgg
    13741 tactggcgga agagctggga ttagtgggca ttttgattct gctcgctctc tacattctgc
    13801 tgatcatgcg cgggctgtgg atagccgcca gagcgcaaac cacctttggt cgcgtcatgg
    13861 ctggcggctt aatgctgata ttattcgttt atgtcttcgt aaatattggt atggtaagcg
    13921 gtattctgcc ggttgtaggg gttccgctcc cactggtcag ttatggagga tcagcgctaa
    13981 ttgtgctgat ggctgggttc gggattgtaa tgtcaatcca cacccacagg aaaatgttgt
    14041 cgaaaagcgt gtaagaggtg cgcaatgcgt aagcagtggc tcgggatctg catcgcggca
    14101 ggaatgctcg cggcatgtac aagcgatgat ggtcagcaac agacggtaag tgtaccgcag
    14161 cctgcggtat gtaacggccc catagttgaa attagcgggg cggacccgcg tttcgaacca
    14221 ctgaacgcga cggcaaatca ggattaccag cgcgacggta aaagctacaa aatcgtgcag
    14281 gatccgtctc gatttagcca ggcgggactg gcggcaatct atgatgccga accaggcagt
    14341 aacctgacgg cctctggcga agctttcgat ccgacacagc tgacggcggc ccatccaacg
    14401 cttccgatcc ccagctacgc cagaatcact aacctggcta acgggcgaat gatcgtggtg
    14461 cgcattaatg atcgcggccc ttacggcaac gaccgcgtta tttcgctttc tcgcgcggca
    14521 gctgaccgtc ttaacacgtc aaacaacacc aaagttcgta tcgatccgat tattgtcgcc
    14581 caggatggtt cgctttctgg tcctggtatg gcttgtacca cagtcgccaa acagacttac
    14641 gccctgcctg cacctcccga tttaagcggt ggcgcgggaa caagttcagt gtctggcccg
    14701 cagggtgaca ttcttccggt cagtaattcg acgctaaaaa gcgaagatcc gaccggcgcg
    14761 ccggtaacca gtagcggttt cctcggcgca ccaacgacct tagcgcctgg tgtactggaa
    14821 ggcagcgaac cgacgcctgc gccacagccc gttgttacag ctccgtcgac aacgcctgca
    14881 acctcgcctg caatggtgac accgcaagcc gcctcgcaaa gcgccagcgg caactttatg
    14941 gtgcaagtcg gggccgttag cgatcaggct cgtgcgcaac agtaccaaca gcaactggga
    15001 cagaagttcg gcgtccccgg tcgcgtaact caaaatggcg cggtctggcg gatccagctt
    15061 ggccccttcg ccagcaaagc cgaagccagt accttgcagc aacgtttgca aaccgaagcc
    15121 caattacagt catttattac caccgcgcag tagcgtaaag caggcatctg atgtgtcaat
    15181 ttctgtaaat gacgttaaca aagtcacgcg gaaagtcaga tgcctgccgg tagtgcattt
    15241 gctatagtag ggcacttttt ttaattccat cacggatgtc gtagttcaga ccatgaatac
    15301 cattttttcc gctcgtatca tgaagcgcct ggcgctcacc acggctcttt gcacagcctt
    15361 tatctctgct gcacatgccg atgacctgaa tatcaaaact atgatcccgg gtgtaccgca
    15421 gatcgatgcg gagtcctaca tcctgattga ctataactcc ggcaaagtgc tcgccgaaca
    15481 gaacgcagat gtccgccgcg atcctgccag cctgaccaaa atgatgacca gttacgttat
    15541 cggccaagca atgaaagccg gtaaatttaa agaaactgat ttagtcacta tcggcaacga
    15601 cgcatgggcc accggtaacc cggtgtttaa aggctcttcg ctgatgttcc tcaaaccggg
    15661 catgcaggtt ccggtttctc agctgatccg cggtattaac ctgcaatcgg gtaacgatgc
    15721 ttgtgtcgcc atggctgatt ttgccgctgg tagccaggac gcttttgttg gcttgatgaa
    15781 cagctacgtt aacgccctgg gcctgaaaaa cacccacttc cagacggtac atggtctgga
    15841 tgctgatggt cagtacagct ccgcgcgcga tatggcgctg atcggccagg cgttgatccg
    15901 tgacgtaccg aatgaatact cgatctataa agaaaaagaa tttacgttta acggtattcg
    15961 ccagctgaac cgtaacggcc tgttatggga taacagcctg aatgtcgacg gcatcaaaac
    16021 cggacacact gacaaagcag gttacaacct tgttgcttct gcgactgaag gccagatgcg
    16081 cttgatctct gcggtgatgg gcggacgtac ttttaaaggc cgtgaagccg aaagtaaaaa
    16141 actgctgacc tggggcttcc gtttcttcga aaccgttaac ccactgaaag taggtaaaga
    16201 gttcgcctct gaaccggttt ggtttggtga ttctgatcgc gcttcgttag gggttgataa
    16261 agacatgtac ctgaccattc cgcgtggtcg catgaaagat ctgaaagcca gctatgtgct
    16321 gaacagcagt gaattgcatg cgccgctgca aaagaatcag gtcgtcggaa ctatcaactt
    16381 ccagcttgat ggcaaaacga tcgagcaacg cccgctggtt gtgttgcaag aaatcccgga
    16441 aggtaacttc ttcggcaaaa tcattgatta cattaaatta atgttccatc actggtttgg
    16501 ttgaaaatta aacacttgaa agtgtaattt ccgtccccat atactaagca tcagtaaaaa
    16561 aactcccgcc ttctggcggg agttgctatt taattacgtt acgccggagc tgacatgaaa
    16621 accaaactta acgaactgct tgaattccct actcctttta cttacaaagt tatggggcag
    16681 gcgttacctg agctggttga tcaggtggtt gaagtggtac agcgccatgc gccaggtgac
    16741 tacaccccaa cggtaaaacc aagcagcaaa ggcaactacc actcggtatc tatcactatc
    16801 aacgccactc atatcgagca ggttgaaata ctgtatgaag aactgggcaa aatcgatatt
    16861 gtccgcatgg ttctgtaact cgcttctccg ttacccggct cctggtcggg taactcccct
    16921 ctcctcgctg tgatatactt ttcccccact tttactcatt ctccacggag atgccgtttt
    16981 gtatcaggat aaaattcttg tccgccagct cggtcttcag ccttacgagc caatctccca
    17041 ggctatgcat gaattcaccg atacccgcga tgatagtacc cttgatgaaa tctggctggt
    17101 cgagcactat ccggtattca cccaaggtca ggcaggaaaa gcggagcaca ttttaatgcc
    17161 gggtgatatt ccggtgatcc agagcgatcg cggtgggcag gtgacttatc acgggccggg
    17221 acaacaggtg atgtatgtgt tgcttaacct gaaacgccgt aaactcggtg tgcgtgaact
    17281 ggtgaccttg cttgagcaaa cagtggtgaa taccctggct gaactgggta tagaagcgca
    17341 tcctcgggct gacgcgcctg gtgtctatgt cggggaaaag aaaatttgct cactgggttt
    17401 acgaattcga cgcggttgtt cattccacgg tctggcatta aacgtcaata tggatctttc
    17461 accattttta cgtattaatc cttgtgggta tgccggaatg gaaatggcta aaatatcaca
    17521 atggaaaccc gaagcgacga ctaataatat tgctccacgt ttactggaaa atattttagc
    17581 gctactaaac aatccggact tcgaatatat taccgcttaa ttccatacat caatggccca
    17641 atttacactg ggtcattact cataatacct gctaatgctt tacatctcct tcgcgtttgt
    17701 atattttctt tatcacttgc agaaatgcgg tgccacgcct tgctccgtaa ctcaccccat
    17761 tgattaacct attgaaatag ttgattatgg tgagcaaaag cgttccgttc caattagaca
    17821 taagattatt gtaatttttt aaatattatt tttccatgaa taaaattgga gtaagtgcgt
    17881 ggatagtaat aatcaaattg aaccctgttt aagcagaaag tcgtcagaag gtaaaccaca
    17941 aatatttaca accttacgaa atattgctct taaccttctg actatttttg aagctgtata
    18001 tgtacataaa gggatcgtta atgcagcgaa agtgcttaat ctgcccccct cggcaatcag
    18061 tcagtctatt cagaaactgc gcgttatatt ccctgaccca ttgtttattc gcaaaggcca
    18121 aggtgtcact cctaccgcat ttgcgatgca tctacatgag tatatcagtc agggccttga
    18181 gtccattctt ggcgcgctgg atatcgaagg aagctatgat aagcaacgaa cgataactat
    18241 tgcgaccact ccctcggtcg gagccctggt ccttcctgtc atctatcggg cgattaaaac
    18301 tcactatccg cagcttttac tgcgcaaccc gcccatcagc gacgcggaaa accaactcag
    18361 tcagtttcaa accgatctca tcatcgataa catgttttgc accaatcgta cggtgcaaca
    18421 tcatgttctg ttcaccgaca atatggtgtt aatttgccgc gagggaaatc cactactctc
    18481 tttagaagat gacagagaga ctatcgacaa cgctgcgcat gtacttctgt taccggaaga
    18541 gcaaaatttc agcggtctgc ggcagagagt tcaagaaatg tttccggacc ggcaaatcaa
    18601 tttcaccagc tacaacattt tgacaatcgc tgcactggtt gccaacagtg acatgttagc
    18661 gattattccc agccgttttt ataacctgtt tagccgctgc tggccgctgg aaaaactgcc
    18721 ttttccgtcc ttaaataagg agcaaataga tttctctatc cactacaaca aattcagcct
    18781 gcgtgatccc atcctgcacg gagtaataga tgttatccgt aatgcatttt gaaaaagtat
    18841 tgttacagcc agatcacagc gcagaacgat aaaatggcac aatccaacaa caattttaca
    18901 ttttcgcgac cgctttggct gctttcaggt ccgtttcaat gatatactgc cagtcgttaa
    18961 ttcaaaaata gttgataatt acaacaatct attgaattga aacgctttcc ttcgtaattc
    19021 gcaactggaa cacgcacgct atgagtaaac ccattgtgat ggaacgcggt gttaaatacc
    19081 gcgatgccga taagatggcc cttatcccgg ttaaaaacgt ggcaatagag cgcgaagccc
    19141 tgctgcgcaa gccggaatgg atgaaaatca agcttccagc ggactctaca cgtatccagg
    19201 gcatcaaagc cgcaatgcgc aaaaatggcc tgcattctgt ctgcgaggaa gcctcctgcc
    19261 ctaacctggc ggaatgcttc aaccacggca cagcaacgtt tatgatcctc ggcgctattt
    19321 gtacccgccg ttgtccgttc tgtgatgttg cccacggtcg cccggtagct cctgatgcca
    19381 atgaaccagt gaaactggcg cagaccattg ccgatatggc gctgcgttat gtggttatca
    19441 cctccgttga ccgtgatgac ctgcgcgatg gcggtgccca gcactttgcg gattgcatta
    19501 ctgccattcg ggaaaaaagc ccgcaaatca aaattgaaac tctggtgccg gatttccgtg
    19561 gtcgtatgga tcgtgctctg gatattctga ctgcaacgcc accagatgtg ttcaaccata
    19621 acctggaaaa cgtaccgcgt atttaccgtc aggtacggcc tggggcagat tacaactggt
    19681 cgctgaagct gctggaacgc tttaaagaag cgcatccgga aatcccgacc aagtctggtc
    19741 taatggtggg actgggtgaa accaatgaag aaattattga ggtaatgcgc gacctgcgcc
    19801 gtcatggtgt gacgatgtta acgctggggc aatatttgca gccaagccgc catcacctgc
    19861 cggttcaacg ttacgttagc ccggatgagt tcgacgaaat gaaagccgaa gcgctggcga
    19921 tgggctttac ccatgctgca tgcggtccgt ttgtccgttc ttcttaccac gccgatttgc
    19981 aggcgaaagg gatggaagtt aagtaatcct gtaataatta cttacatctg tctgataaaa
    20041 aacccgcttt ttgaagcggt ttttttgtat cgaacaagat attgagggag cgtcctgctc
    20101 gccacgtcac tctttatgag agagcttttc agcctgaaga tcaacgtctg cgcctttttt
    20161 cgccgcagca tcatcatcat tcatcgcctt cttgaaccct ttaatggccg ctccaaggtc
    20221 tccgcccagc gtacgtaact tcttagtccc aaacagcaga acgaccagcg ccgcaactac
    20281 tagcagtttg gtaatactaa tctcacccat agataccttc ttgacatata accggcaaca
    20341 gaacgcgcct taaaaaccag agaatattaa cggtcattcg acgcgcgcac acaatagcaa
    20401 tctgtaacaa ggtgaatcaa gcgccgagta aaaaaacatc ataataattg cggcggcgca
    20461 aagcgacggt tgtttaagac gggcagttgc gcgcgcacct gacgcacacg ttcgggcgtc
    20521 acttccgcca taatgagtgc aggcatttct gacgctgccg caatggtgac gccaaaggga
    20581 tctataatcc ggctttgccc gatatttttg ttcccgcact cgcccgccgc caccatataa
    20641 caggtggtat ccagcgcacg agcggcaagc aacgttgacc agtgatgctc tttgagcggc
    20701 ccgcgaaccc aggcggcagg aagtaccagg atttcagctc cctgtaatgc ctgtgccagc
    20761 gccagctctg gaaagcgtaa gtcataacag gtcatcagac cgaccttcat cccttccacc
    20821 tccagtaacg gagcgatttc attaccagca tcaacacggc gtgattcctg aatggcaaat
    20881 gcatcataga gatgcagttt ggcataacgg gcgacgatgt ttcctgcctg aagtgccacc
    20941 agcatattcc atgcgcgccc cggcgttgaa ggaacatgaa tcgtcagaat tgtcgtcatc
    21001 atgttacgtt tactttctcg ccgtaaacgt ccgaggaatt cgccttccag cagctgtgct
    21061 gatttaaccg atagatctgc atcatgatca tcgcgtgcca gcaatgcttc cggcaggaca
    21121 aacagcgata cgtcgttttc cgccgcctgc gccatcaacg aggcacaaat ctcagcgttc
    21181 ttttcccaca cagatgtaac agcaaactgt cctgcagcaa ccagcattgc cacctcctgt
    21241 cagagtcgta aaattcgcca acgacgatta ttcggcgtta cacttatcac tcatacaaat
    21301 caaatagcag gattttgcag tgttacaact tcttttagca gtttttattg gcggtggtac
    21361 gggaagcgtg gcgagatggc tgttaagtat gcgatttaac ccactgcatc aggcgattcc
    21421 gttggggacg ctgacagcaa acctgattgg ggcattcatc ataggaatgg gattcgcatg
    21481 gttcagcagg atgacgaaca ttgatccagt gtggaaagta ttaatcacca ccggattttg
    21541 tggcggtcta acaaccttct caacattttc ggcagaagtg gtgtttttgt tacaagaggg
    21601 tcgctttggc tgggcattac tgaacgtttt cgtcaacctt ctggggtctt ttgccatgac
    21661 agcactggct ttctggctgt tttcggcctc aaccgcacac taaagaccca aaaaaaaccc
    21721 gctgattaag cgggttttga attcttgctg acgtatctta cagagcgatt acgtttgcag
    21781 cagaagggcc tttggcaccg ttagtgattt cgaactctac gcgctgacct tcagcaagag
    21841 ttttaaaacc attagtctgg attgcagaga agtgtacgaa cacgtctttg ctgccgtctt
    21901 ccggagtaat gaaaccgaat cctttggact cattaaacca cttaacgtta cctttaatct
    21961 tagacatcaa aattaccttt acatgaaaaa tagacacaaa tgctgcgtcg gttaccagta
    22021 caccaattgt ggtacgcttt gtccagtgca actttactaa aaagtgataa aagtcgcgtt
    22081 atttttgatg ttacttattt tagctattga ttttaaagaa gttactaaaa cttcatttgt
    22141 ctcaaaactg aaagcgcatc caggcaaagt acacattgcc attgttgtag gtacccggaa
    22201 tgtaggtcat ctgaaaagtc actgggccat aacccacgga ggccaatggc agtagaaccg
    22261 ggagagggat gtaattccag ttatcgcgtg ccgttacgcc agcggtgaat cccagaccta
    22321 aatgaaaatt ttcatccgcc agcggtcgcc aggtactttc ccatccgtat ccggcaatcg
    22381 gttcccattt gttccacgag tccttaaatg ccatggcata caggccatgc cagtttcctt
    22441 tttcatccca acgcgacagg ccaaaaccgc caccccacgg tcgctcgtta tagcgatcgg
    22501 ttttttcttt gtcgtaagcg aaacgtgcat gccaggtgat ggcaggaata tataaatcat
    22561 aatgttcagg ctgttgccag gttggtgcaa tattttctct aaacgttgtc atccactcat
    22621 ctgcgttagc aaaaacttta ccaacgctga ttaactgaat aaaaacaaag gaaaagatag
    22681 cgacatattt actcacgttc atttgtgacc ataaaacatt tatcaaaaat ctactactag
    22741 catagcaaag ctacaattaa cataacctta atagacccaa cataaagaat aatctgaata
    22801 gctgctctat ttatttccgc ttgttcaagt taaatatttc cgcgcatcga ttaaagatga
    22861 tgcgtcgttt tctgcgatgg gaatagtcaa aaaagaaaaa ccaagtcttt tttgatgaca
    22921 aaatgcaatc aaggaaaaat tattttattt tttaacgaga tacaacaatc accttaacaa
    22981 agtatataat atatatcgtc aacctatgct catattagat tattttttga gcgcacagcc
    23041 gcagctaaca ccattgcaat taacaaattt gcatcaatcc accatcaatt tgcacacatt
    23101 attatgtgat aattgccaac cgctaaatat gcgttttgtt atctatgtat aaaaacagta
    23161 acttcaatgt cttaatggca gtttttcttg attttaatca gcattcatcg ccaatttatt
    23221 gggcatattt tttccttaag ctttaggaat tttttattat ttactttggg gcctggagac
    23281 aggaaaaatt atgctgacat tcattgaact ccttattggg gttgtggtta ttgtgggtgt
    23341 agctcgctac atcattaaag ggtattccgc cactggtgtg ttatttgtcg gtggcctgtt
    23401 attgctgatt atcagtgcca ttatggggca caaagtgtta ccgtccagcc aggcttcaac
    23461 aggctacagc gccacggata tcgttgaata cgttaaaata ttactaatga gccgcggcgg
    23521 cgacctcggc atgatgatta tgatgctgtg tggatttgcc gcttacatga cccatatcgg
    23581 cgcgaatgat atggtggtca agctggcgtc aaaaccattg cagtatatta actcccctta
    23641 cctgctgatg attgccgcct attttgtcgc ctgtctgatg tctctggccg tctcttccgc
    23701 aaccggtctg ggtgttttgc tgatggcaac cctatttccg gtgatggtaa acgttggtat
    23761 cagtcgtggc gcagctgctg ccatttgtgc ctccccggcg gcgattattc tcgcaccgac
    23821 ttcaggggat gtggtgctgg cggcgcaagc ttccgaaatg tcgctgattg acttcgcctt
    23881 caaaacgacg ctgcctatct caattgctgc aattatcggc atggcgatcg cccacttctt
    23941 ctggcaacgt tatctggata aaaaagagca catctctcat gaaatgttag atgtcagtga
    24001 aatcaccacc actgctcctg cgttttatgc cattttgccg ttcacgccga tcatcggtgt
    24061 actgattttt gacggtaaat ggggtccgca attacacatc atcactattc tggtgatttg
    24121 tatgctgatt gcctccattc tggagttcct ccgcagcttt aatacccaga aagttttctc
    24181 tggtctggaa gtggcttatc gcgggatggc agatgcgttt gctaacgtgg tgatgctgct
    24241 ggttgccgct ggggtattcg ctcaggggct tagcaccatc ggctttattc aaagtctgat
    24301 ttctatcgct acctcgtttg gttcggcgag tatcatcctg atgctggtat tggtgattct
    24361 gacaatgctg gcggcagtca cgaccggttc aggcaatgcg ccgttttatg cgtttgttga
    24421 gatgatcccg aaactagcgc actcttccgg cattaacccg gcgtatttga ctatcccgat
    24481 gctgcaggcg tcaaaccttg gccgtaccct ttcgcccgtt tctggcgtag tcgttgcggt
    24541 tgccgggatg gcgaagatct cgccgtttga agtcgtaaaa cgcacctcgg taccggtgct
    24601 tgttggtttg gtgattgtta tcgttgctac agagctgatg gtgccaggaa cagcagcagc
    24661 ggtcacaggc aagtaaatag taatgccgga ggcaagtttc ctccggcttt atcatgtcac
    24721 ccactgtggt atatgcgttg tggtctgcca actttgccgt gaacaatttc agcaataatc
    24781 agatggcggc tggcgcaata ttcaagataa cgtctggcag acgtgcggct gatggtcagt
    24841 gcctgcgcca ccgtttctgt cgtatgttgc acaccaggct ctttaaacag ttttcgcacc
    24901 gcgtttagcg tcaagggatc aatgccggtc ggcagttcgt ctttaggttc accgcgagca
    24961 taggcattaa acatctcatc aatttgcttc tggctggcgc tatcaatact ttccagcata
    25021 tgtttacgct ggcggaaacg ggttagcgtt tgccccagcc gttcataggc aatgggctta
    25081 atgagataat caaatacacc acaacgtacg gcttcagaca ccgtttccat atcgctggct
    25141 gcagtggtaa acaccacgtc gccgggataa tgcgcctgca ccagttcatg caataaatta
    25201 atccctctgc cgtcaggaag atagttatcg agcaagatta gccccggctt aaaacgctcg
    25261 atcatcattc gggcctgcgc caggtttccc gccagtaata tctgactgaa tccgggaatg
    25321 tgacgaatat attccgcatg catctctgcc agcggcgttt cgtcctcaac gatcaatagg
    25381 gttaatggag ctgtcattag gtttcacttt cggaatatag attgaaaata aggtaccgca
    25441 gggatcatta tcttcgagag tgataacacc accgcagcgc gttacgtagc tggcaatcaa
    25501 gtacaaccca atgccatgtt caccgggctc gtcagcacgc gtactgaccc cctgctcaaa
    25561 tattttgtct cgtagagact ctggaacgcc gcagccctga tcggcgactt caatcaccac
    25621 atcatcgcct tcatcgctga ggaataattc aacgatcttg tttccttcat cgctacgcag
    25681 gctggcttcg aaggcgttat caagtaaatt gcccacaatg gctgcaaact cggtgctatc
    25741 cagtcctggc ggcagttgcg aaagctggct accggggaca atgatcattt ttagccccag
    25801 ttcccgggcg cgctgcactt taccaaaaag cagccccgcc acctagcgat cggcaaacgc
    25861 ctcgcgcagg ctgtcaataa gctgttgctg ggcctgagac tccccctgca ccatcgccag
    25921 cacgcgatca tactctttca tctgcaacag accattgagc gtcgacatcc aattgagatg
    25981 ctcgtgtcgc aatgtacgaa ggctctcaac gtattgtttt atttgcgtca gttgcgcatt
    26041 gagggtggaa atttcgtctt tactgcgaaa gctgataatg gcccccagca aatcatcacc
    26101 tgaacgaata gcttcccgat tggcaataac gctcagaccg ttaaagttag ccaccatatc
    26161 ctgacgtttt tcatcaatct gttcggtaaa gaaatcggcg ggcctgacca cttcagcaat
    26221 gggtttaccc aaccattgcc gtccggggga actcagcccc agcatctttc ttgcgttacg
    26281 attgatggcg gtaatgtaac cgtgcggatc caccgcaatc agcccttcat aaaccgaact
    26341 aaacagcgcc tcttgctgac ggaccacgcg tgcgatttgc tttggctcca tgcccatcat
    26401 ctgccgacgg atatgcgcgg ccaggaacca cgacagcaac atcagaatcc ctaacagcac
    26461 gacaaacaca cctgccatcg gtaataaaaa ctcagcccgc cagctatcga ttttactcac
    26521 caggtagcca atcgacacca cgccgatgac ttttccatcg tcatcaaaga ttggcgtttt
    26581 ggcgcgcatc gccatcccca ttgacccttt cccggtaatg aagtagctct cccctttctc
    26641 cagcgcgccc tgtttggtga actgcatagg ataaccaatt ttctccggat taggatggta
    26701 aaggcggatc gagtgccggt cgccatcacc acataatcaa aatcggtatc tctttgtaat
    26761 ttgttagcga tggtcgccag ccgtttgtag tcacgcgttt tcaccgcaga gatgacactg
    26821 tcattggagg caataatttt cgcctgattc attgccatgt cgcgtacatg aagcgttaaa
    26881 tagtcctcaa aactggccgt aaaatattgc gccaaggctg caatgacaaa tattgagaac
    26941 accagaatca gcaaaaagat acgcagcgga aatgccagtc tttggaaaaa tgcaaactgt
    27001 ttattctcgt taagctgcaa cattgttttc cttgcgggtt atcccgagcc tctttgacag
    27061 atgtaattaa aatgttgaat caaaatacat agatattaat tatgatcgtg gcaaatttta
    27121 ttcattaaat caattaaatc acttaaacct gcaggtcatt tcgtaattac attaattaaa
    27181 aaacttaaac cattaaataa ataaaaattt cacgccgaaa tactccttag gatgtatagc
    27241 gaaaggagaa aaagatatac ctcgatcacc cccctttctc ccaagtgaaa ataaaaggtt
    27301 atcagtttgc aacattgaac aacattcgtt gcaaatcgat aacaacatgc accttcagga
    27361 tactatttat tatgttcggc aatgatattt tcacccgcgt aaaacgttca gaaaataaaa
    27421 aaatggcgga aatcgcccaa ttcctgcatg aaaatgattt gagcgttgac accacagtcg
    27481 aagtatttat taccgtaacc cgcgatgaaa agcttatcgc gtgcggtgga attgccggaa
    27541 atattattaa atgcgttgct atcagtgaat ccgttcgcgg tgaaggactg gcgctgacat
    27601 tagccactga actgataaac ctcgcctatg agcggcacag cacgcatctg tttatttata
    27661 ccaaaaccga atacgaggcg ctgttccgcc agtgcggttt ttccacgctg accagcgtac
    27721 ccggcgtgat ggtgctgatg gaaaacagcg ccacgcgact gaaacgctat gccgaatcgc
    27781 tgaaaaaatt tcgtcatcca gggaacaaga ttggctgcat tgtgatgaac gccaatccct
    27841 ttacgaatgg tcaccgttat ctgattcaac aagctgcggc acagtgcgac tggttgcatc
    27901 tgtttttagt caaagaagat tcttcacgct tcccctatga agaccggctg gatctggtgt
    27961 taaaaggcac cgccgatatt ccacgcctga ctgtgcatcg cggctccgaa tacatcatct
    28021 cccgcgctac gttcccttgc tacttcatta aagaacagag cgtcattaac cattgttaca
    28081 ccgaaattga tctgaagatt ttccgtcagt acctcgctcc cgcactgggt gtaactcacc
    28141 gctttgtcgg tactgaaccc ttttgtcgcg ttaccgccca gtacaaccag gatatgcgct
    28201 actggctgaa aacgccgact atctccgcac cgcccatcga actggttgaa attgagcggc
    28261 tgcgttacca ggagatgccg atatccgctt cccgggtacg tcaactgctg gcgaaaaacg
    28321 atctcacggc tatcgcgccg ctggtccctg cagtcacgct gcattatttg cagaacctgc
    28381 ttgagcactc ccgccaggac gcggcagctc gtcaaaagac ccccgcatga gaaacaggtg
    28441 aaaaatgaaa ataaaccagc ccgccgttgc aggcaccctt gagtctgggg atgtgatgat
    28501 acgcatcgcc ccactcgata cgcaggatat cgacctgcaa atcaacagca gcgttgagaa
    28561 acagtttggc gatgcaattc gcaccaccat tctggacgtt ctcgcccgct acaacgtgcg
    28621 cggcgtacag ctgaatgtcg atgacaaagg cacactggac tgcattttac gtgcacgact
    28681 ggaagccctg ctggcacgcg ccagcggtat cccgactctg ccatgggagg attgccaatg
    28741 atttccgctt cgctgcaaca acgtaaaact cgcacccgcc gcagcatgtt gtttgtgcct
    28801 ggtgccaatg ccgcgatggt cagcaactcc ttcatctacc cggctgatgc cctgatgttt
    28861 gacctcgaag actccgtggc attacgtgaa aaagacaccg cccgccgcat ggtttatcac
    28921 gcgctgcaac atccgctgta tcgcgatatt gaaaccattg tgcgtgtcaa cgcgctggat
    28981 tccgaatggg gtgttaacga cctggaagcc gtcgttcgcg gtggtgcgga cgttgtgcgt
    29041 ctgccgaaaa ccgataccgc tcaggatgtt ctggatattg aaaaagagat cctgcgtatc
    29101 gaaaaagcct gtggtcgtga acccggcagc accggcctgc tggcggcgat tgaatctccg
    29161 ctgggcatta cccgcgcagt ggaaatcgct cacgcttccg agcgtttgat cggtatcgcc
    29221 ctcggtgcag aagactatgt gcgcaacctg cgtacagaac gctccccgga aggaactgaa
    29281 ctgctgttcg cacgctgttc cattttgcag gccgcgcgct ctgcgggtat tcaggcgttc
    29341 gataccgtct attccgacgc taacaacgaa gccggattcc tgcaagaagc cgcccacatc
    29401 aaacagctgg gctttgacgg caaatcgctg atcaacccgc gtcagattga tctgctgcac
    29461 aacctctacg caccgaccca gaaagaagtg gatcacgccc gccgcgtcgt agaagccgct
    29521 gaagccgccg ctcgcgaagg cctcggcgtg gtttccctga acggcaagat ggtggacggt
    29581 ccggttatcg atcgcgcccg tctggtgctc tcccgtgcag aactttccgg catccgcgaa
    29641 gaataaggca atcaaaatga cgcagaaaat tgaacaatct caacgacaag aacgggtagc
    29701 ggcctggaat cgtcgcgctg aatgcgatct tgccgctttc cagaactcac caaagcaaac
    29761 ctaccaggct gaaaaagcgc gcgatcgcaa actgtgtgcc aacctggaag aagcgattca
    29821 tcgctctggt ttacaggacg gcatgacggt ttccttccat cacgctttcc gtggcggtga
    29881 cctgaccgtc aatatggtga tggacgtcat cgcgaagatg ggctttaaaa acctgactct
    29941 ggcctccagc tccctgagtg attgccatgc gccgctggta gaacacattc gccagggcgt
    30001 ggttacccgc atttatacct ctggcctgcg cggtccactg gcggaagaaa tctcccgtgg
    30061 tctgctggcg gaaccggtgc aaatccactc tcacggcgga cgtgtgcatc tggtacagag
    30121 cggcgaactg aatatcgacg tggctttcct cggcgtccca tcctgtgatg aattcggtaa
    30181 tgccaacggt tacaccggta aagcctgctg tggctccctc ggctatgcaa tggttgatgc
    30241 cgacaacgca aaacaggtcg tgatgcttac cgaagaactg ctgccttatc cgcataatcc
    30301 ggcaagcatt gagcaagagc aggttgattt gatcgtcaaa gttgatcgcg ttggcgatgc
    30361 tgcaaaaatc ggcgctggtg cgacccgtat gaccactaac ccgcgcgaac tgcttattgc
    30421 ccgtagcgct gcggatgtga ttgtcaactc tggctacttc aaagaaggtt tctccatgca
    30481 aaccggcacc ggcggcgctt cgctggcggt aacccgtttc ctggaagaca aaatgcgtag
    30541 ccgcgatatt cgcgccgact tcgccctcgg cggtattact gcaacgatgg ttgatctgca
    30601 cgaaaaaggt ctgatccgca aactgctgga tgtgcagagc tttgacagcc atgctgcgca
    30661 atcgctggcc cgtaacccca atcacatcga aatcagcgcc aaccagtacg ctaactgggg
    30721 ttcgaaaggc gcatcggttg atcgtctcga cgtggtggta ctgagcgcgc tggaaattga
    30781 cacccagttc aacgttaacg tgctgaccgg ctctgacggc gtactgcgtg gtgcttccgg
    30841 tggtcactgc gataccgcga ttgcctctgc gctttccatc atcgtcgcgc cgctggtacg
    30901 cggtcgtatt ccgactctgg tggataacgt gctgacctgc atcaccccgg gctccagtgt
    30961 cgatattctg gtcacagacc acggtatcgc agttaacccg gcacgtccgg agctggcaga
    31021 acgtctgcag gaagcgggca ttaaagtggt ttccattgag tggctgcgtg aacgtgcgcg
    31081 tctgctgacc ggtgaaccac agccgattga attcaccgac cgcgtcgttg ccgttgtgcg
    31141 ttaccgcgat ggctcggtga tcgatgttgt acatcaggtg aaggaataag ccatgcacct
    31201 gcttcctgaa ctcgccagcc accatgcggt gtcaattccc gagctgctcg tcagccggga
    31261 tgaaaggcaa gcacggcaac acgtctggct caagcgccat cctgttccac tggtctcctt
    31321 taccgtggtt gcgcctaggc cgattaaaga cagtgaggtc acacgccgaa tttttaatca
    31381 tggcgtgaca gccttgcgtg ccttagccgc aaaacagggc tggcaaattc aggagcaggc
    31441 tgcactggtt tccgccagcg ggccggaggg tatgttgagc attgccgccc cggctcgcga
    31501 cctcaagctc gccaccattg agcttgaaca tagtcatcct ctcgggcggt tatgggatat
    31561 cgatgtcctg acgcccgaag gcgaaattct ctcccgccgc gactattcac tgccgcctcg
    31621 ccgctgcctg ttgtgcgagc aaagcgcagc cgtctgcgcg cgtggaaaac ccatcaactg
    31681 accgatttac tcaaccgcat ggaggcactg ctgaacgatg tcgatgcctg caacgtcaac
    31741 taaaaccaca aagcttgcga cgtcattaat cgatgagtac gccctgctgg gctggcgcgc
    31801 catgctgact gaagtcaatc tgtcaccgaa accaggtctc gtggatcgca ttaactgcgg
    31861 tgcgcataaa gatatggcgc tggaagattt ccaccgcagc gcgctggcga ttcagggctg
    31921 gctaccccgt ttcattgaat ttggtgcctg tagtgcggaa atggcaccag aagcggtact
    31981 ccacggatta cgcccaattg gtatggcttg caaaggtgat atgttccgcg ccaccgcggg
    32041 cgtaaacacg cataagggca gcattttttc tttagggcta ctgtgtgcgg caattggccg
    32101 tttgcttcag ctcaaccagt cgctaacgcc aacaaccgtt tgttctacgg cggcaagttt
    32161 ctgccgtggc ctgaccgatc gcgaactgcg taccaataat tcacaactga cggcaggtca
    32221 acggttgtac cagcagcttg cccttaccgg cgcacgcggt gaagccgaag cgggttatcc
    32281 actggtgatc aaccacgcct tgccgcatta cctcactctg ctggatcagg ggttagatcc
    32341 tgaactggca ttgctcgata ccttgctcct actgatggcg atcaacggcg ataccaacgt
    32401 tgcttcgcgc ggtggcgagg gggcctgcgc tggctacagc gcgaggcgca aacattattg
    32461 caaaaagggg gcattcgaac ccccgccgat ctcgattatc tccggcagtt cgacagggag
    32521 tgtatcgaac gaaatctcag tccaggcggc agtgccgacc tgctgatcct tacctggttt
    32581 ttagcacaga tttaattatt taagcacttg ataaatttgg aaatattaat tttcggagaa
    32641 cccgtatgtc tttagcaaaa gataatatat ggaaactatt ggccccactg gtggtgatgg
    32701 gtgtcatgtt tcttatccct gtccccaacg gtatgccacc acaggcatgg cattacttcg
    32761 ctgtgtttgt ggcaatgatt gtcggcatga tcctcgagcc aattccggca acagcgatca
    32821 gttttattgc ggttactatt tgcgttattg gcagtaatta cctgctcttt gatgccaaag
    32881 aattagctga cccagcgttt aatgcgcaaa aacaggcgct gaaatggggt ctggctggtt
    32941 tttccagcac cacggtatgg ctggtatttg gcgcatttat ttttgcatta gggtatgaag
    33001 tttccgggtt aggtcgtcgc attgcccttt tcctggtgaa attcatgggc aaacgcacgc
    33061 tgacgttggg ttatgcgatt gtcattatcg acattctgct ggcgccgttt acaccgtcca
    33121 acaccgcgcg taccgggggt acggtttttc cggtcattaa aaacctgccg ccgttgttta
    33181 aatcattccc caacgatccg tccgcgcgtc gtattggcgg ctatttgatg tggatgatgg
    33241 tcattagtac cagtctgagt tcgtccatgt ttgtcaccgg tgcggcacca aacgtgctgg
    33301 gtctggagtt cgtcagcaaa attgccggta tccagattag ctggttgcag tggttcctct
    33361 gcttcctgcc ggttggggtt atcttgctta tcattgcgcc gtggctttcc tacgtgctgt
    33421 acaaaccgga aatcacacac agtgaagaag tggcaacctg ggcgggtgat gaactgaaaa
    33481 ccatgggtgc gctgacacgc agagagtgga cactgattgg ccttgtattg ctcagcttag
    33541 gtttgtgggt ttttggcagt gaagtcatta atgctactgc agttggtctg ctggcagttt
    33601 cgctaatgct ggccctgcac gttgtgcctt ggaaagatat tacccgctat aacagcgcat
    33661 ggaacacgct ggtcaacctg gcaactctgg ttgtgatggc taacggcctg actcgttctg
    33721 gctttattga ctggttcgcc ggtaccatga gtacgcacct ggaaggattc tcaccaaacg
    33781 caacggtgat tgtactggtt ctggtgttct actttgcaca ctacctgttt gccagcctgt
    33841 ctgcgcacac cgcaaccatg ctgccggtta ttctggccgt cggtaaaggt attccgggcg
    33901 taccaatgga acaactgtgt atcctgctgg tgctgtctat cggtatcatg ggctgtctga
    33961 cgccctatgc aaccggtcct ggggtgatta tttacggctg tggctatgtg aaatcaaaag
    34021 attactggcg tcttggcgca atcttcgggg tgatttatat ctctatgttg ctgttggttg
    34081 gctggccgat tctcgccatg tggaactaat acgttcgcca aacgctgaat aaatcatcac
    34141 gcccgccagg taagcccacc tggcgggcgt gatgatttaa tagatagtat tcagtgtatg
    34201 tatgagttcc acacccatta tgaaagcatt ctggcgtaac gccgcgttgc tcgcggtttc
    34261 tctgcttccc ttctcttctg ccaacgccgt agcgttgcag gcaaaacagt atggcgattt
    34321 tgatcgctat gtcctggccc tctcctggca aaccggattt tgccagagtc aacacgatcg
    34381 aaatcgtaac gaacgagatg aatgtcgcct gcaaaccgaa acgaccaaca aagctgattt
    34441 tctgaccgta catggtctgt ggccaggatt gcctaaatcg gttgctgccc gtggtgttga
    34501 tgaacgccgc tggatgcgct tcggttgcgc tactcgccca atcccgaatc taccagaagc
    34561 gcacgccagc cggatgtgtt catcgccgga aaccgggtta tcactggaaa cggccgctaa
    34621 actaagtgaa gtcatgccag gagctggcgg acgttcctgc ctggaacgct acgaatatgc
    34681 caaacacggt gcctgctttg gttttgatcc ggacgcatac ttcggtacga tggtacgcct
    34741 gaatcaagaa attaaagaga gcgaagccgg aaaattcctt gcggataatt acggtaaaac
    34801 agtgagccgc cgtgactttg acgccgcctt tgccaaaagc tggggaaaag agaacgtgaa
    34861 agcagttaag ctaacgtgcc agggtaaccc tgcgtatttg actgaaattc agatctcgat
    34921 caaagctgac gccatcaacg ctccgctttc tgcaaactca ttcttgccac aaccacaccc
    34981 aagcaactgt ggcaaaacct ttgtgattga taaagtgggt tattaatcat ctgatttaca
    35041 aaacacgcta attcgtcttc cataaaccgt gacgattaag aattatacat aatgcgctgc
    35101 attgaggaat tccctgaatg tgacgcaaat cacttcaaag agtgagcaac agtcagtatc
    35161 atcatgtgag ttaaaccctc gccgcctgac ggtgagggtt ttcttttggg tatgtttatc
    35221 tgcgacactc gcagtaccga cgacatggag taaaaatgtc cagaccaact atcatcatta
    35281 acgacctgga tgccgaacgc atcgatattc tgctggagca acccgcctat gctggtttgc
    35341 caatcgccga cgcgttaaac gcagagttgg atcgcgccca aatgtgttcg ccagaagaga
    35401 tgccacacga cgtggtgaca atgaacagcc gggttaaatt ccgcaatctt agcgatggcg
    35461 aagtgcgtgt gcgcacgctg gtgtatccgg caaaaatgac cgatagcaat actcagcttt
    35521 ccgttatggc tccggtaggt gccgcactgc tggggctgcg cgttggcgat tccattcact
    35581 gggaacttcc gggcggcgtt gcaacccacc ttgaagtgct ggaactcgaa taccagccag
    35641 aagctgctgg cgactacctg ctttaatccc atctgcacaa gcgataactc gctttgccca
    35701 gaggatgcac tcgcatcctc tttacgcaaa atcagcaatt tttcctggtt ctcactgttc
    35761 acttttgctg caaaattatt ccgtttcgtt tgtgggaata accatggcag aagcatttta
    35821 catcctgata ggatttctga ttatggcggc gattatcgtc atggctgtcc tttacctcga
    35881 aaaccactcc tgacgatcat attgttcccc ccggcatcgc attcaccaga cctgaaactg
    35941 ccttctgcgc ctcctctgcg ctttgtgcac cgggtaccag aatcacctta cggcactcct
    36001 cttcacgttt ttcgaaaatc tcatatcccc gggcggcctc ttcaaacggc atatagtggg
    36061 taacaatttc ttctggtttc agtaatcctt tctcaattaa cggtaataat tctcccagcc
    36121 atgcgtgaac gtgggtctgt cccattttaa acgtcaaccc tttatcaaag gcgtcaccaa
    36181 acaggaaacc gtgaataaat ccagcgtaga cgcccggtac gctaacaatg ccgccacgcc
    36241 tgaccgccgc aatacactgg cgcaacgctt taccgctgct gccctccagt ttcaggttag
    36301 tcagcaccgt ttccgtagtg ctgcctttcg cttcaaaacc gacggcgtct attactgcat
    36361 ccacgccccg gtgacctgcc gtttgttcaa taattgactg tgccggatcg ctatcttcat
    36421 cgaaattaat cgggatcgcg ccgtagcggt cagcggcgaa actcaagcgg tagggatgat
    36481 gatcaacaac aaaaatctgt tccgcaccga gcaaccgtgc acaggcgatt gtcaacaatc
    36541 ccactggacc ggcaccatag actgcaacgc ttgaaccttg ttggatctgc gcattttttg
    36601 ctgcctgcca tgccgttggc agaatatcag aaaggaaaag ggctttatca tctgaaagca
    36661 aaggcggtac tttaaacggc cccacattcc ctttagggac gcggacatat tccgcctgtc
    36721 caccaggaac gccaccatac aggtgactat aaccaaacaa tgccgcggga gctggtatct
    36781 gttttttatt gagcgcagcg cctttacccg cattggtatt ttcgcaggcg gcatattgct
    36841 gcattcgaca gaaaaaacag tcgccacaag caatgacaaa cggaattacc acccggtcgc
    36901 ctttttgcaa attttttacg tcctttccgg tttcaacgac ttcccccata aattcatgac
    36961 caaaaatatc gccatgttta acctggggta ttttgcctcg ataaagatgg agatcagagc
    37021 cacagatcgc cgttgccgta atacgcagaa taatatcatc tgcctgttca atgcccggat
    37081 cgggaacatt ttctacctga acgtgatgtg ggccgtgata agtcaatgct ttcatgcaac
    37141 ctccagagac agttcaaaaa agagtcagtc tttaagggta gctatcacag cgggaaaacg
    37201 ggcggtaccg caggttttgg gagaattcct ggtgttcagt gagaatatat taatcacaga
    37261 aaccgttcgt aaggaaaaag aaccagacaa atatcaggga taaatattat aatcatggcg
    37321 aatgatttgt tcatgattaa cagggagaaa gggttatgta taagacaatc attatgccag
    37381 ttgatgtatt tgaaatggaa ttgagcgaca aagctgttcg ccacgctgaa ttcctcaccc
    37441 aggatgacgg agttattcat ctacttcacg tactacccgg gtcagccagc ctgagcctgg
    37501 accgttttgc cgctgatgtg cgtcgttttg aagagcatct gcaacatgaa gcagaagaac
    37561 gtctgcaaac gatggtcagc cacttcacca tcgatccttc ccgcattaaa caacatgtcc
    37621 gttttggtag cgtgcgggat gaagtcaatg agttggcaga agaactgggg gctgatgttg
    37681 tagttatcgg ttctcgcaac ccatcgattt cgacccatct gttaggttct aacgcctcga
    37741 gcgtgatccg ccacgccaat ctgcctgtac tggtcgttcg ctaacagata aaagtattta
    37801 tgccgccctg cctggaacat cccggcaggg ctttttaatg ccataaaaaa gccgctaggt
    37861 ttgaccccgg cggctaagca attgcaggtg aatcttactt cttcttatgc agttttggtg
    37921 cgaatcaggt agtcaaaagc actcagagag gctttggcac cttcgccagt ggcgatgatg
    37981 atctgcttgt acggaaccgt cgtacagtca cccgctgcga atacgccttt gacgttggtt
    38041 tcgcatttcg catcaatgat aatctcaccc atgcggttac gttcgactgc gccttcgagc
    38101 cagttggtgt tcggcagcag accaatctgc acgaaaatac cggccagttc gatgttgtga
    38161 atatcgccgc tgacacgatc tcgatattcc agaccaacga ctttgctgcc gtcgcctttc
    38221 acttccgtgg tttgcgcatt cagaataatg tcgacgtttt tcaggctgcg cagtttgtcc
    38281 tgcagaacct ggtcggcttt catttctggc gcaaattcca gcagcgttac gtgctcaacg
    38341 atacccgcca ggtcaattgc cgcttccacg ccggagttac cgccgccgat aaccgctacg
    38401 cgtttacctt taaacagcgg gccgtcgcag tgcgggcagt aggtcacgcc tttggtgcga
    38461 tactgatctt cgcccggaac gttcatgttg cgccattttg caccggtcgc cacgataatg
    38521 ctgcgtgctt tcagtaccgc gccagaagct gtttcaatct gatgcagacc accttcaact
    38581 gctgctggga tcagtttgct ggcgctctgg ctgtcgatca catcaacgtc gtattcatca
    38641 acgtgaactt tcagtgcgcc tgccagcttc tgcccttcag tcttcggtac agaaatgtag
    38701 ttttcgatat caacggtatc gaggatctga ccaccaaaac gttcgcccat cagaccggta
    38761 cggatgcctt tacgtgcgga gtaaattgct gccgctgcac ccgccgggcc ggaaccgacg
    38821 attaatacgt cataagcatc acgcttgttc agctcttctg ccgcacgttt ttccgcgccc
    38881 gtatcaattt tggcaacgat ttcagtcaac gtcatgcggc cctgaccaaa ctctttcccg
    38941 tttacgaaca ctgccggaac gcccatcacg ttgcgatcgg tgatttcgtt ctggaaggtg
    39001 ccgccgtcaa ttgcagtgtg cttgatgcgc gggttcagta cgctcatcag gttcagcgcc
    39061 tgcaccacgt ccgggcagtt atggcaagag agcgagtaat aggtttcgaa ttcaaaatca
    39121 ccgtcaatat ggcgaatctg ctccagcaga gactgcgctt ctttcgacgg atgaccaccg
    39181 gtccacagca acgccagtac cagcgaggtg aactcgtggc ccagcgggga gcctgcaaaa
    39241 cgtggcccct ggttggaacc tgggttggtg atcaggaaag acggcttacg caccggcaag
    39301 ctgttatctt ctttaaaggt gactttgtct gacagttctg cgatttcagc caacagttcc
    39361 ttgatttctg ccgatttagc gctgtcatcc agcgtggcaa ttaactcaac aggcttggtc
    39421 aatttctcaa ggtaagcctt gagttgagtt ttcatatttg tgtcgagcat gtttatctcc
    39481 tgggctttaa acatcatcat gcaagcggcc tctacggcta cctggatgca gcttgcatca
    39541 tagtgcgggg aagaaaatcg ggtgccgcag cacccgaaga attaggtgaa tttccgaagt
    39601 atttcgcgcc ggagttggta gcgcgaaaga cgaaggaaat ttagatttta ccaaccaggt
    39661 ccagagacgg agccagagtt gcttcacctt ctttccattt agccgggcaa acttcacctg
    39721 ggtgagaagc tacgtactgt gctgctttga ttttacgcag caggtcagac gcgtcacggc
    39781 caatgccttc agcggtaact tcgattgcct ggatgatacc ctgcgggtca acaacgaagg
    39841 tcgcacggtc agccagacct tcatcttcac gcatgttgtc gaagttacgg gtcagggcgc
    39901 cagtcgggtc gccgatcatc gcatatttga ttttagcgat ggtttcagag ctgctgtgcc
    39961 atgctttgtg ggtgaagtga gtatcggtag atactgcgta tacgtctacg cccagtttct
    40021 gcagttcttc gtagtggtca gcaacgtcac ccagttcggt cgggcatacg aaagtaaagt
    40081 cagccgggta gaagaagaag acgctccagc ggccttcggt atctttttcg gtgatttcga
    40141 tgaattcgcc gtttttgaat gcctggtttt taaaaggttt aattttggtg ttaatcaagg
    40201 acatctatac ttcctccgtg ttttcgatga gatgtaaggt aaccaatttt tgccgattcg
    40261 gctaatgcgt ttccattatc aaatcgataa gttttacctt acaaccttcg taagacaact
    40321 ttgtgaactt tgcaccgcca gcggcgataa aaagtaaaat ggcccccttt ccaggtgacc
    40381 gtgtaatctg aactaccctt tggtatcttc agcgcctgcc tgcaggctga ggcgttgccc
    40441 ttacaaatgc aacaacgaca tggattacaa caccctcata aacaaagggc aatcacctga
    40501 tctaagctct tacctatgac agtgataggt tatgcctttt actcgacttt tgcactgact
    40561 gaaaaggaca aattaatgtt aaaaaagata cttttactgg ctctgcttcc tgcaatcgcc
    40621 ttcgcagagg aacttcctgc tccagtaaaa gcgattgaaa aacagggcat tacaatcatc
    40681 aaaacgttcg atgcccccgg aggaatgaaa ggttatctcg gaaagtatca ggatatgggc
    40741 gtcaccatct acctgactcc agatggtaag cacgctatct ctggttacat gtacaacgag
    40801 aaaggtgaaa acctgagtaa cacacttatc gaaaaagaaa tttacgcacc agccggacgc
    40861 gaaatgtggc aacggatgga acaatcccac tggctcctcg acggtaaaaa agatgcgccg
    40921 gtcattgtct acgtc
//
LOCUS       DAJVUP010000013        40514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.013, whole genome shotgun sequence.
ACCESSION   DAJVUP010000013 DAJVUP010000000
VERSION     DAJVUP010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.013"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(154..1011)
                     /gene="murI"
                     /locus_tag="OQQ75_000696"
     CDS             complement(154..1011)
                     /gene="murI"
                     /locus_tag="OQQ75_000696"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312925.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HCS1975130.1"
                     /translation="MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLL
                     PDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPA
                     LREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEML
                     GSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVL
                     PEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPEAEQLLPVLQRYGFE
                     TLEKLAVLG"
     gene            complement(956..2804)
                     /gene="btuB"
                     /locus_tag="OQQ75_000697"
                     /pseudo
     CDS             complement(956..2804)
                     /gene="btuB"
                     /locus_tag="OQQ75_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418401.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent vitamin B12 receptor BtuB"
     regulatory      complement(2858..3048)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            3162..4262
                     /gene="trmA"
                     /locus_tag="OQQ75_000698"
     CDS             3162..4262
                     /gene="trmA"
                     /locus_tag="OQQ75_000698"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HCS1975131.1"
                     /translation="MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHY
                     RMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR
                     HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK
                     IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY
                     CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG
                     VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPCILYISCNPETLCKNLE
                     TLSQTHKVERLALFDQFPYTHHMECGVLLTAK"
     gene            complement(4302..4661)
                     /locus_tag="OQQ75_000699"
     CDS             complement(4302..4661)
                     /locus_tag="OQQ75_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YijD family membrane protein"
                     /protein_id="HCS1975132.1"
                     /translation="MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLV
                     LTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIM
                     VFWIGAKMRNRKQEVAE"
     gene            complement(4661..5311)
                     /gene="fabR"
                     /locus_tag="OQQ75_000700"
     CDS             complement(4661..5311)
                     /gene="fabR"
                     /locus_tag="OQQ75_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HCS1975133.1"
                     /translation="MMGIRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI
                     APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
                     NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
                     IVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE"
     gene            5632..7032
                     /gene="sthA"
                     /locus_tag="OQQ75_000701"
     CDS             5632..7032
                     /gene="sthA"
                     /locus_tag="OQQ75_000701"
                     /EC_number="1.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Si-specific NAD(P)(+) transhydrogenase"
                     /protein_id="HCS1975134.1"
                     /translation="MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGG
                     CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ
                     GFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
                     PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE
                     MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD
                     SLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
                     KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN
                     VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM
                     AEAYRVAALNGLNRLF"
     gene            complement(7015..7932)
                     /gene="oxyR"
                     /locus_tag="OQQ75_000702"
     CDS             complement(7015..7932)
                     /gene="oxyR"
                     /locus_tag="OQQ75_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HCS1975135.1"
                     /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG
                     VMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVG
                     PYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPL
                     FDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH
                     FRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGS
                     PLRSRYEQLAEAIRARMDGHFDKVLKQAV"
     gene            complement(8199..9572)
                     /gene="argH"
                     /locus_tag="OQQ75_000703"
     CDS             complement(8199..9572)
                     /gene="argH"
                     /locus_tag="OQQ75_000703"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HCS1975136.1"
                     /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL
                     VTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK
                     LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA
                     QPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGF
                     ASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSG
                     SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDAFDT
                     WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VEAIRQGKPLEDLPLDELQKFSHVIGEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIA
                     FAQARLG"
     gene            complement(9633..10409)
                     /gene="argB"
                     /locus_tag="OQQ75_000704"
     CDS             complement(9633..10409)
                     /gene="argB"
                     /locus_tag="OQQ75_000704"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418394.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HCS1975137.1"
                     /translation="MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGG
                     GCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGL
                     FLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVN
                     ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKV
                     NAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA"
     gene            complement(10417..11421)
                     /gene="argC"
                     /locus_tag="OQQ75_000705"
     CDS             complement(10417..11421)
                     /gene="argC"
                     /locus_tag="OQQ75_000705"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HCS1975138.1"
                     /translation="MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL
                     ISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDL
                     SGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQ
                     LALKPLIDADLLDLNQWPAINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI
                     ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKG
                     VPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI
                     "
     gene            11575..12726
                     /gene="argE"
                     /locus_tag="OQQ75_000706"
     CDS             11575..12726
                     /gene="argE"
                     /locus_tag="OQQ75_000706"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HCS1975139.1"
                     /translation="MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFK
                     DLGFNVEVQPVPGTRNKFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHD
                     GKLYGLGTADMKGFFAFILDALRDIDVTKLKKPLYILATADEETSMAGARYFAETTAL
                     RPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQ
                     LRDNLKERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTLNELNG
                     LLNDALAPVIERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEA
                     PFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELIIQVIHHFCWH"
     gene            13078..15729
                     /gene="ppc"
                     /locus_tag="OQQ75_000707"
     CDS             13078..15729
                     /gene="ppc"
                     /locus_tag="OQQ75_000707"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004203687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCS1975140.1"
                     /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKS
                     SRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE
                     VIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQ
                     LDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVP
                     NYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT
                     DLFLKDIQVLVSELSMVEAPPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARL
                     KGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVR
                     IDIRQESTRHTEALGELTRYLGIGDYKSWSEADKQAFLIRELNSKRPLLPRNWQPSAE
                     TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL
                     DDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIR
                     TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP
                     EITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYL
                     RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK
                     VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKEL
                     RNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKE
                     GQEPDPRVEQALMVTIAGIAAGMRNTG"
     gene            15912..17645
                     /locus_tag="OQQ75_000708"
     CDS             15912..17645
                     /locus_tag="OQQ75_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase CptA"
                     /protein_id="HCS1975141.1"
                     /translation="MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTN
                     GIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLF
                     VMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALL
                     YGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNE
                     NNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLT
                     VFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMT
                     ARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQDVLNDPAPKKLIIVHLLGT
                     HIKYKYRYPENQGKFDGNTDHVPPGLSAEELESYNDYDNANLYNDHVVASLIKDFKAA
                     DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFS
                     QDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYD
                     TLPYGDQVGNQ"
     gene            17860..18711
                     /locus_tag="OQQ75_000709"
     CDS             17860..18711
                     /locus_tag="OQQ75_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1975142.1"
                     /translation="MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLE
                     IVLEGEFVDTGAGATLVPGDVLYVAAGGWNFPQWKTPTTTFSVLFGKQQLGFSVVQWD
                     GKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
                     IQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYL
                     NHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLT
                     EKPTTPE"
     gene            complement(18698..19039)
                     /locus_tag="OQQ75_000710"
     CDS             complement(18698..19039)
                     /locus_tag="OQQ75_000710"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS1975143.1"
                     /translation="MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVSIETQGALG
                     TENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVL
                     SAPQQTHLILE"
     gene            complement(19041..19919)
                     /locus_tag="OQQ75_000711"
     CDS             complement(19041..19919)
                     /locus_tag="OQQ75_000711"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418387.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[formate-C-acetyltransferase]-activating enzyme"
                     /protein_id="HCS1975144.1"
                     /translation="MTSSAGQRISCNVVETRLNDVARIFNIQRYSLNDGEGIRTVVFF
                     KGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDA
                     LEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPAS
                     KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPG
                     FTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKDVAAPSSADVAT
                     MREMAERAGFQVTVGG"
     gene            complement(19885..22182)
                     /locus_tag="OQQ75_000712"
     CDS             complement(19885..22182)
                     /locus_tag="OQQ75_000712"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1975145.1"
                     /translation="MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRA
                     KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFA
                     ISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATSTQIFSINQTDKGQGHIIID
                     YPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAVLAETMAANCT
                     DAQRREELLTIAEISRHNAEHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM
                     LPFYQASLTQGEDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT
                     ENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRLGTGIPQIF
                     NDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHEN
                     EGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR
                     DITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGE
                     KVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVP
                     LGSVVGATPDGRFAGEQLADGGLSPMLGQDEQGPTAVLKSVSKLDNTLLSNGTLLNVK
                     FTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLWEAQQRPQDYAGLVVRVA
                     GYSAFFVELSKEIQDDIIRRTAHQL"
     gene            complement(22233..22553)
                     /locus_tag="OQQ75_000713"
     CDS             complement(22233..22553)
                     /locus_tag="OQQ75_000713"
                     /EC_number="2.7.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS1975146.1"
                     /translation="MTKIIAVTACPSGVAHTYMAAEARESAAKAKGWEVKVETQGSIG
                     LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHL
                     AQTA"
     gene            complement(22568..23647)
                     /locus_tag="OQQ75_000714"
     CDS             complement(22568..23647)
                     /locus_tag="OQQ75_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit EIIC"
                     /protein_id="HCS1975147.1"
                     /translation="MNELVQILKNTRRHLMTGVSHMIPFVVSGGILLAVSVMLYGKGA
                     VPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAG
                     FFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGA
                     LTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVVI
                     AAVGICIPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVI
                     PSIMVGSVCGAVTAALVGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVL
                     KSLARKNGSSTDEKEDDLDLDFEIN"
     gene            23956..26457
                     /gene="ptsP"
                     /locus_tag="OQQ75_000715"
     CDS             23956..26457
                     /gene="ptsP"
                     /locus_tag="OQQ75_000715"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312903.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1975148.1"
                     /translation="MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRK
                     GNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDE
                     LEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALSNLPAAKDVDAEQSALE
                     NGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLRQHLLTGVSEGLSCAEAIVAS
                     ANHFCEEFARSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELT
                     PSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQHQTIYIDG
                     NAGAIVVEPGEAVARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVE
                     AQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGG
                     DKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGSLKIMIPMISSM
                     EEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFSIGSN
                     DLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVL
                     PLLVGLGLDELSMSAPSIPAAKARMTQLDSRECRKLLNQAMACRTSLEVEHLLAQFRM
                     TQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFST
                     GLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIF
                     SRLARRIMHEEFRNALVNAASADAIASLLQHELEL"
     gene            26469..27131
                     /gene="fsa"
                     /locus_tag="OQQ75_000716"
     CDS             26469..27131
                     /gene="fsa"
                     /locus_tag="OQQ75_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS1975149.1"
                     /translation="MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLP
                     RLQKAIGDEGILFAQTMSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKMLKKE
                     GITTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRTVQELQALLEMHAPES
                     MVLAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTT
                     HL"
     gene            27142..28245
                     /gene="gldA"
                     /locus_tag="OQQ75_000717"
     CDS             27142..28245
                     /gene="gldA"
                     /locus_tag="OQQ75_000717"
                     /EC_number="1.1.1.6"
                     /EC_number="1.1.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional L-1,2-propanediol
                     dehydrogenase/glycerol dehydrogenase"
                     /protein_id="HCS1975150.1"
                     /translation="MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFA
                     QSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKA
                     LAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGA
                     PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAM
                     LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVA
                     FGTLTQLVLENAPVEEIETVAAFSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGE
                     TIHNMPGGATPDQVYATLLVADQYGQRFLQEWE"
     gene            28519..29136
                     /locus_tag="OQQ75_000718"
     CDS             28519..29136
                     /locus_tag="OQQ75_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HCS1975151.1"
                     /translation="MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGAR
                     QQIGNTLFYDPAYVRLTYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFA
                     EYPQKWKLKRPDSNIDHRRVPNLETWFSRHNKTRPISKNAGDYQAGDIVSWRLDNGLA
                     HIGVVSDGFARDGTPLVIHNIGAGAQEEDVLFSWRMVGHYRYFVK"
     gene            complement(29163..30068)
                     /gene="yijE"
                     /locus_tag="OQQ75_000719"
     CDS             complement(29163..30068)
                     /gene="yijE"
                     /locus_tag="OQQ75_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine transporter YijE"
                     /protein_id="HCS1975152.1"
                     /translation="MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTAL
                     RCIFGALVLFIVLLLRGRGMHPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAIL
                     SYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILS
                     GVSWGASAIVAKRLYTRHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFW
                     ALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGS
                     GIVLIVLALALVSRKKKEAVSVKSI"
     gene            complement(30162..32342)
                     /gene="katG"
                     /locus_tag="OQQ75_000720"
     CDS             complement(30162..32342)
                     /gene="katG"
                     /locus_tag="OQQ75_000720"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HCS1975153.1"
                     /translation="MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVD
                     LLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIR
                     MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA
                     DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG
                     ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAG
                     PTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF
                     KYEWVQTRSPAGAIQFEAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR
                     FLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDI
                     IDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVR
                     ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI
                     EMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFD
                     SSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKYTASRADL
                     VFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL"
     gene            complement(32671..33561)
                     /gene="metF"
                     /locus_tag="OQQ75_000721"
     CDS             complement(32671..33561)
                     /gene="metF"
                     /locus_tag="OQQ75_000721"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HCS1975154.1"
                     /translation="MSFFHASQRDALNQRLAEVQGQINVSFEFFPPRTSEMEQTLWNS
                     IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTI
                     ARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAK
                     SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK
                     QAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT
                     LNRAEMSYAICHTLGVRPGL"
     gene            complement(33910..36342)
                     /gene="metL"
                     /locus_tag="OQQ75_000722"
     CDS             complement(33910..36342)
                     /gene="metL"
                     /locus_tag="OQQ75_000722"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase II"
                     /protein_id="HCS1975155.1"
                     /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM
                     MVVSAAGSTTNQLINWLKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAF
                     VSDLERLAALLDSGINDAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE
                     RAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG
                     ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV
                     SGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLAH
                     KEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSEVADSALKILDEAGLPGELRLRQGLA
                     LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDGISLVAVLRTGPTESLIQGLHQ
                     SVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD
                     GLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGF
                     HVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTIL
                     SISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAR
                     EAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVA
                     RFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA
                     IQSDINRLAQLL"
     gene            complement(36345..37505)
                     /gene="metB"
                     /locus_tag="OQQ75_000723"
     CDS             complement(36345..37505)
                     /gene="metB"
                     /locus_tag="OQQ75_000723"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HCS1975156.1"
                     /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH
                     DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG
                     GSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC
                     HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV
                     VTELAWWTNNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY
                     HPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLI
                     SHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG"
     gene            37782..38099
                     /gene="metJ"
                     /locus_tag="OQQ75_000724"
     CDS             37782..38099
                     /gene="metJ"
                     /locus_tag="OQQ75_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015855437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HCS1975157.1"
                     /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
                     QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPET
                     WEY"
     gene            38283..38891
                     /locus_tag="OQQ75_000725"
     CDS             38283..38891
                     /locus_tag="OQQ75_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX family permuted papain-like enzyme"
                     /protein_id="HCS1975158.1"
                     /translation="MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATH
                     SDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQK
                     LAQTVKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLV
                     QAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW"
     gene            39036..39711
                     /locus_tag="OQQ75_000726"
                     /pseudo
     CDS             39036..39711
                     /locus_tag="OQQ75_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(39883..40155)
                     /locus_tag="OQQ75_000727"
     CDS             complement(39883..40155)
                     /locus_tag="OQQ75_000727"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975159.1"
                     /translation="MELQLSDKGVIKMKAIQCCYFLALVSSNLMAGVMGNDNIFLSNS
                     DSAALYCVAKIFPDGENILIYKVNIINASSKKDVFFMKAQHQPTMT"
     gene            complement(40121..40514)
                     /locus_tag="OQQ75_000728"
                     /pseudo
     CDS             complement(40121..40514)
                     /locus_tag="OQQ75_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747579.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4329 domain-containing protein"
BASE COUNT         9965 a        11136 c        10076 g         9337 t
ORIGIN      
        1 gcttttctct gttgagattc tcaggagaac cccgctgacc cggcggcgtg tttgccgttg
       61 ttccgtgtca gtggtggcgc attataggga gttattccgg cctgacaaga ggaaatttaa
      121 aataattttc tgaccgcgca acattcaacc aaatcagcct aaaactgcca gtttttcgag
      181 cgtttcgaag ccgtaacgct gtaaaacggg caataattgt tcagcttctg gcgtcattgc
      241 catacaaaag gcaatattcg catcggcaga ttttgcatcc ggggcttcat gttctaacaa
      301 ccaggccgtt cggcgagcaa tcgctgcgcc agaatccact agccgggttc cctctggcag
      361 cacttgtaac agttcttctt gtagtagagg gaaatgggtg caacccaata caacggtatc
      421 tggcggctct ttcattctta accacgggcg taggatacgt tttagtgcat ccagagaaac
      481 atcttcgcca tgtagcttcg cttcagccaa ctcaaccatc tctgccgagc ccagcatttc
      541 tatctggcat tcattagcga aacgcgcgat cagctcatga gtataagaac gtttaactgt
      601 tccgcgggtt gccagtaatc cgacaatgcc atttgccgtc agacgtgcag caggtttaat
      661 cgccggcacg acaccaacaa ccgggaagtc gaacttttcg cgtaatgcag gaagtgaaac
      721 ggtactggca gtgttgcaag cgaccacagc cagcgcaagg ggataacgtt cttgcaccgc
      781 ggtgacaatt gccaccactc gctcaacaat aaacgcttcg cttttttcgc catacgggaa
      841 agcgacgtta tcgaaagcat aaatgtaatg gagatccggt aagagatgcc ggatctcgtc
      901 atagaccgac aacccaccga cgccggagtc aaacaccagc acggtgggac gtggttcaga
      961 aggtgtagct gccagacaag gtgtattccc gtcctgcagt ttggtagcca tagactgtct
     1021 cataatcttt gtcgaacagg ttggctattt taccacgaac tgtcaggtga gaggtgaccg
     1081 gatacgcaac cgcaagatcc cacaagctca caccgcccat tttaacggtt tgataaggat
     1141 aagatgagta atccttatca tagcgagtgc ctaaatactg ataagtaata ccccagtcga
     1201 agtcatacaa ctgccagtcg agctggtatt tcacctgctg tttagcacgg cgtaacaacg
     1261 gcgtgtcggt aatcgcattg cgcgcatcga cataatcata actcacagta tgcgtcagtg
     1321 gtccggtatc aaaattggcg gtcgcctcga cgcccttaat ccgcgctttc ccttcgttgt
     1381 aatatttcag ggtgtgatca tcataatcga tcaagtcact gacatcgtta cgatatccgg
     1441 aaatacgcca gttcacccca gcggttaagc cttcaaacgc gccttcccac tgtttgcttt
     1501 tctccgggtc cagattcgga tttccgtaga agccatacag ttgccccaga tttggtgcct
     1561 tataagatgt cccgtaggaa gcaatgaagc gataaccttc gatgaattcc caaccggcgc
     1621 tggtttgcca ggttccatga cgaccaaact gtgagttatc gtcactgcgt gctgcgcctt
     1681 caaaggtaaa atcgccgact tgttgcagcc cggtcagata gatgccggta ttacgttgat
     1741 catatccatc ctcaacataa cctgtacccg gcgtcgtagt ctgtttctgc cagtcgacac
     1801 ccgcaccaat actaccgtga ccaacgatga cattgtttgc ccactggacg gtgtattgct
     1861 tcatctcatc gagcgtcgcc gacgaatcat aacgaccata atggggatcg tagttgtaat
     1921 ctttgctatg gctatagctg gtaatgagtt gtgatttaat cagttcgccg ttatagcgca
     1981 gcccggcgtc ccaactttgg ctatagagtt tacggatatc gagcaacggt gaaccgggag
     2041 aataatacgc gtcataattg gtacggttat catagccata gccgcgcaca aagccgctcc
     2101 aggcatcagt aaagttatgc tccagcgcgc cataaagcgt tttacttaaa aaaacatcgt
     2161 tatctgtctg cgcttgcgtt ccggtattac cataggcaac aacatcataa ccatgagtat
     2221 gggcataatc gcccaacagc gttacccgtg tcttatcccc cagttgttgc tgcgtagaga
     2281 catcatagtt ctgataacta ttgcttcccc accctgctga aatttccgtt ccgggttcat
     2341 cgcgcgtcgt gatgatattc accaccccgc ctattgcatc ggaaccataa acagcggagc
     2401 gcggcccacg gatatattca acacgctgga caagcgcacg caatagggaa ctggctaagg
     2461 tcggcagaac cactcacccc cgccagattc aggcgtacgc catcaattaa caccaacaca
     2521 tgactggcat ttgtaccgcg aataaaaata gatgagagct gacctgaacc gccgttttgg
     2581 gtgatatcga cgcccggaag acggcgcagc acatcattga ccgaggtcga ctgccagcgg
     2641 tcgatatcct gacgggtcac aacggtggtt ggtgcaagca cagtgctgcg cggctgttca
     2701 aaacggttag cagtaacgac gagagtatcc gggctggtat cctgtgccca agcggaaaag
     2761 gctgtgacag aacacgccgt cagcagcgaa gcttttttaa tcattgtaaa gcatccacaa
     2821 tagaagaagg atgccgcagg tttcatcaat attacgcgat gatgagacgt tggccggcag
     2881 gtcttcgggc ttggaggggt atctaagata ctaagagatg atgacttccc accggatggc
     2941 agtgtccgca taacgcaatc atcgcacctt tccttaccgc tgcgcgtcag ctccagattc
     3001 gcactggatt ccctattaac tcacaggacc ggcaagtgga tgctacaggt tgtaacaagt
     3061 tactgtccag acgtagctca caaataggaa ttcatcaaga tctggacatc tgatgagcaa
     3121 tccctacaat cgccgcgtac tttaattttt caggatacat catgaccccc gaacaccttc
     3181 caacagaaca gtatgaagcg cagttagccg aaaaagtggt acgtttgcaa agtatgatgg
     3241 caccgttttc tgacctggtt ccggaagtgt ttcgctcgcc ggtcagtcat taccggatgc
     3301 gtgcggagtt ccgcatctgg cacgatggcg atgacctgta tcacatcatt ttcgatcaac
     3361 aaaccaaaag ccgtatccgc gtggatagct tccccgccgc cagtgaactt atcaaccagt
     3421 tgatgacggc gatgattgcg ggtgtgcgta ataatcccgt tctgcgccac aagttgttcc
     3481 agattgatta cctcaccacg ctgagtaatc aggcggtggt ttccctgcta taccataaga
     3541 agctggatga tgagtggcgt caggaagcgg aggccctgcg cgatgcactg cgcgcgcaga
     3601 atctgaatgt gcatctgatt ggtcgggcaa cgaaaaccaa aatcgagctg gatcaagatt
     3661 acatcgacga gcgtctgccg gtcgcaggga aagagatgat ctaccgtcag gtagaaaaca
     3721 gctttaccca gccgaacgcg gcgatgaata ttcagatgct ggaatgggcg ctggacgtaa
     3781 ccaaaggctc aaaaggcgat ttactggagc tgtactgcgg caacggtaac ttttcattag
     3841 cgctggcgcg caattttgat cgggtattag ccaccgaaat cgctaagccg tcggttgctg
     3901 ctgcgcaata caacatcgca gctaaccata ttgataacgt acaaattatt cgtatggcgg
     3961 cagaagaatt tactcaggcg atgaatggtg tgcgcgagtt taaccgcctg caagggatcg
     4021 acttaaagag ttatcagtgc gaaaccattt ttgtcgaccc accgcgcagc ggtctggaca
     4081 gtgaaaccga gaaaatggtg caggcgtatc cgtgtatttt gtacatctcc tgtaacccgg
     4141 aaacgttatg caagaatctg gaaacattaa gccagacgca caaggtcgaa cgtctggctc
     4201 tgtttgatca gttcccctac acgcaccata tggagtgcgg cgtattactg accgcgaagt
     4261 aaaacccatg ccggatgcgc cagcatccgg cataataccg attactcagc aacttcctgc
     4321 ttacggttac gcatcttcgc gccaatccag aacaccataa tgacggagag tactgccggg
     4381 aagaagttag agccgatatc cggatattcc gcacgaacta ccgtgctgta cagcagtacg
     4441 ccgagaataa aacaggcagc tgccagaccc ggcaagccta ccggcatagt gcgattaaga
     4501 taacgttgat gcaggcagta aaccgtcagc accagggaaa taatcgggaa tacagaaaat
     4561 ggcacaatgg agctaaacag cgctgcgaaa gtaccattaa tcgataagcc agcaactaac
     4621 gccagcagca gcgtacctct atcttgattt gcttgtttca ttactcgtcc ttcacatttc
     4681 ccggaataat tgcggttttc tcttgttcac ggcgatacca gtaataagcc cctttcgaaa
     4741 tcattcgcag ttgcagtacc agtcgctctt ctaattgccg acgttgttcg acgccgacgt
     4801 ccaacgcctc ggcacccgca ctgaagacaa ttgtcaccat tgcttcggct tgcgcttcag
     4861 taaacgcacg cggcatatgg ttttcgagtt ccagatagtc cgcaagttcc gcaatgaagt
     4921 gctgaatttc acgcgcaacg gcggcacgaa acgcagcgga ggtgccggag cgttcccgca
     4981 ataataaccg gaaggcgtta ggattattac cgatgaactc cataaatgtg gagaccgagg
     5041 tgcggatcac actcccgcct ttggcgatac gctgacgcgc ctggcgcatg agttggcgta
     5101 gcattaaacc gctctcatca accatggtca gacccagttc gtctacgtcg cggaaatgcc
     5161 gataaaaaga ggtgggagca atgcccgctt cacgcgccac ttcacgcaaa ctcaggctgg
     5221 cgaagctgcg ttcagcactt aattggctaa atgcggcttc caccagcgaa cggcgggttt
     5281 tttctttttg ttgcgctctt atgcccatca cgatgtctga atccttgcca aaagtactgc
     5341 tggcactata ccagagaatg aacatactgg attgctccag tattgtgaat gaacggtaac
     5401 gcaataaaac atatttactg gccggttctt ttacgtacag cggaaacctg ccgcttaaac
     5461 ggagagtatc gtcgataaaa atccaataaa acgtcagggc aaaagtaaga aacagacaaa
     5521 gcaaaggccg ctcaggatat agccagataa atgacgggga tcaattggct tacccgcgat
     5581 aaaatgttac cattctgttg cttttatgta taagaacagg taagccctac catgccacat
     5641 tcctacgatt acgatgccat agtaataggt tccggccccg gcggcgaagg cgctgcaatg
     5701 ggcctggtta agcaaggtgc gcgcgtcgca gttatcgagc gttatcaaaa tgttggcggc
     5761 ggttgcaccc actggggcac catcccgtcg aaagctctcc gtcacgccgt cagccgcatt
     5821 atagaattca atcaaaaccc actatacagc gaccattccc gactgctccg ctcttctttt
     5881 gccgatatcc ttaaccatgc cgataacgtg attaatcaac aaacgcgcat gcgtcaggga
     5941 ttttacgaac gtaatcactg tgaaatattg caggggaacg ctcgctttgt tgacgagcat
     6001 acgttggtgc tggattgccc ggacggcagc gtcgaaacac taaccgctga aaaatttgtt
     6061 attgcctgcg gctctcgtcc atatcatcca acagatgttg atttcaccca tccacgcatt
     6121 tacgacagcg actcaattct tagcatgcac cacgaaccgc gccatgtact tatctatggt
     6181 gctggagtga tcggctgtga atatgcgtcg atcttccgcg gtatggatgt aaaagtggat
     6241 ctgatcaaca cccgcgatcg cctgctggca tttctcgatc aagagatgtc agattctctc
     6301 tcctatcact tctggaacag tggcgtagtg attcgtcaca acgaagagta cgagaagatc
     6361 gaaggctgtg acgatggtgt gatcatgcat ttgaagtcgg gtaaaaaact gaaagctgac
     6421 tgcctgctct atgccaacgg tcgcaccggt aataccgatt cgctggcgtt acagaacatt
     6481 gggctggaaa ctgacagccg cggacagctg aaggtcaaca gcatgtatca gaccgcacag
     6541 ccgcacgttt acgcggtggg cgacgtgatt ggttatccga gcctggcatc agcggcctat
     6601 gaccaggggc gcattgccgc gcaggcgctg gtaaaaggcg aagccaccgc acatctgatt
     6661 gaagatatcc ctaccggcat ttacaccatc ccggaaatca gctctgtggg caaaaccgaa
     6721 cagcagctga ccgcaatgaa agtgccatat gaagtgggcc gcgcccagtt taaacatctg
     6781 gcacgcgcac aaatcgtcgg catgaacgtg ggcacgctga aaattttgtt ccatcgggaa
     6841 acaaaagaga ttctgggtat tcactgcttt ggcgagcgcg ctgccgaaat tattcatatc
     6901 ggtcaggcga ttatggaaca gaaaggtggc ggcaacacta ttgagtactt cgtcaacacc
     6961 acctttaact acccgacgat ggcagaagcc tatcgggtag ctgcgctaaa tggcttaaac
     7021 cgcctgtttt aacactttat cgaaatggcc atccattctt gcgcggatgg cctctgccag
     7081 ctgctcatag cggctgcgca gcggtgagcc aggacgataa accaggccaa tcgtgcggcg
     7141 aggttccggc ttaatacacg gcaaataaac aaccccatcg cgtttgcgct ccggcggcac
     7201 agccagcgca ggcagtaaag tgatcccgct acctgccgcc accatgttac gcagtgtctc
     7261 caggctggtc gcgcggaagt gtgtatcttc atccgccccg gcttcaaagc agaaacccat
     7321 tgcctgatcg cgcaaacagt gaccatcttc cagcatcagc agtttttccc ctgccagatc
     7381 ggccatcggt acgcattcgc ggttcgccca cgggtgatct tcatagatag ccagcaacat
     7441 tggctcatca aacaacggca cttcaatgaa tgcttcgctc tctttcacca gcgcgaggat
     7501 cacgcaatcg agtttgccgc tgtccagttg cgccagtaac tggtgggtct gtgcttcatg
     7561 cagatacatt tccagctttg gaaatgtctg gtgcagcatc gggataatat gcggcagcag
     7621 gtacggtcca accgtaggaa tcaaaccaat atgcagcggt ccggacatcg tctcgccctg
     7681 ctggcttgcc atctctttaa ggactttcac ctcacgcagc acggtacgcg cctgatccac
     7741 cagcagcatt cccgcctggg tgaacaacac tttacggctg gtccgctcca gcaacatcac
     7801 gcccagctca tcttccagct tacgaatttg gccgctaagc gtcggctggc taacgtggca
     7861 ggaatctgcc gcacgccgaa aatggcggtg ttcagccaat gccaccaggt actcaagatc
     7921 acgaatattc attatccatc ctccatcgcc acgatagttc atggcgatag gtagaatagc
     7981 aatgaacgat tatccctatc aagcattctg actgataatt gctcacagaa acggagcggc
     8041 acctctttta acccttgaag tcactgcccg tttcgagagt ttctcaactc gaataactaa
     8101 agccaacgtg aacttttgcg gatctccagg atccgctttt ttttgccata aaaaagcccg
     8161 gcgataagcc aggctcaaat ttgtacatat aaatgttctt accccaaccg cgcctgcgca
     8221 aaagcaatcg cttgggccac ctgctgcggt gagacgccgc cttttgccgc acgcttgtcg
     8281 aggcacgatt gtagcgacag aatcggatag acatcttcgc caatcacgtg gctgaatttc
     8341 tgcaactcgt cgagcggcag atcttccagc ggtttgccct gacgaatggc ttccaccacc
     8401 gcttcaccca cgatatggtg cgcctcgcgg aaaggtacgc ctttcgccac caggtaatcc
     8461 gccagttcgg tggcgttggc gtaaccctgc tgagccgctt cctggcaacg tggacgtttc
     8521 acctgaatgc cgtccagcac cagcgccgcc atatgcaggc agtccagcca ggtatcgaac
     8581 gcgtcgaaca gaccttcttt gtcttcctgc atatctttgt tgtaagccag cggcaaacct
     8641 ttcagcgtca tcatcatgcc ggttaacgca ccctgcaccc gaccgcattt accgcgaatc
     8701 agctccagcg catccgggtt tttcttctgc ggcattaatg atgaaccgga agtcacgcgg
     8761 tcagaaagct ccacaaaccc cgcttcgccg gtgttaaaga aaatcagatc ttcagcaaaa
     8821 cgcgacagat gcaccatgcc gatagcggca gccgacagca gttccaacac atggtcacgg
     8881 tcagaaacgc tgtccagact gttacgggtc gccgaagcaa agcccagcca gcctgctaac
     8941 tgttcacggt cgatttcata ggccgttccc gccagcgcgc cacagcctaa tgggctgaca
     9001 tccagacgct taagcgcatc ctgcaaacgg ctttcatcac gcgccagcat ctcaacatag
     9061 gccaggcacc agtgcgcgaa cgtcaccggc tgggcgcgtt gcaggtgagt gtaacctggc
     9121 attaccgcgt cctgattgtt ttgtgcggtt tccaccagcg ccgattgcag ctgccggtta
     9181 gccgtcagta actcgctaac ggtatctttg caccacagtt tcaggtcagt cgctacctga
     9241 tcattacggc tacgcccggt atgcagcttt ttgcctaact ggcccacttt gtcgatcagt
     9301 ttgccttcca cccagctatg gatatcttcg gcgtcgcttt caaggatttg ttgtggcctg
     9361 gcgcgaacat cttccagcaa cacgttcagc gcctcttcca gttgcgcctg ctcttctgcg
     9421 gttaacacgc cgaccgttac cagggctttg gaccaggcca cagagccaac aatatcctgc
     9481 tccgccagac ggtaatcaaa gcgcagtgag tcgttgaatt gtttgaaccg ttgatctgct
     9541 gcctgggtaa aacgcccgcc ccaaagtgcc ataactctgt ttccttattt tgaaattcaa
     9601 tgccggaaag ctgcgcctcc ggctaacaaa acttaagcta aaatccgcgt acccatcggc
     9661 ataccgttaa acagtgccgg aagctgctcc gcatgacgcc aggaggcgat atctaccgga
     9721 cggcccagcg tgcgggccgc atccagcgcc gcgttcactt tcactatcat gccgtcagta
     9781 ataatgccct gctcaatcag ttgttctgct ttcgcggcgg tcatttcggc aatgcgttgc
     9841 cctttgccgt cgagaatgcc gctgacgtcg gagagcaaaa tcagatccgc gcccagcgtt
     9901 gccgccagcg ccgttgccgc ctggtcggca ttgacgttca tcagttgccc ttcgtctgtt
     9961 acgccaatgg agctgaccac cggcagataa ccgttctcca gcaaggagtt gataagctta
    10021 ggcgaacctg gctgcgccag tccaacatga cctaactctt catcaagctg ggtcactttg
    10081 acgctgtcgc catcaccgag aaacaaacct acagccgcaa tctgatgttt cttcgcccat
    10141 gccaacaggg ttttatttgc cgttcccgcc agtgctccgg tgataatgtc tatctgatca
    10201 gcaggcgtca cccgcaggcc gtttttcttt ttcaccggca gattcagccc tttcatcagc
    10261 tcatccacca cgcaaccgcc gccgtgcaca atcaccagcg gacgctgatg tgactcacga
    10321 taattcacca gtgcgctaaa cagacgttcc agcgcctctt cactatccag cagtacgccg
    10381 cccagtttga taattaatgg attcatcatt gcacccttaa ataagagact gcgtttccgc
    10441 atagccgaaa cgaatattgg cgcactgtac cgcttgtgcc gccgcgcctt tcagtaagtt
    10501 gtcttcggtc gccacaataa tcagatgctc gccctgaacg gcaaacccga tatcgcaaaa
    10561 tggcagccca acgacatttt tcagcgccgg aacgcctttg tcatacagcc gcaccagcgg
    10621 tttatgggca tacgcctgct gtaacacttg cgcgacttgc gcctgggtca cacccgattt
    10681 caggcggcag gtaatggttt cgagaatgcc gcgcgggaaa ttgcccagat gtggggtgaa
    10741 gataacgtca gcaccgaggt gtgtggcgat ctctggttga tggcgatgag taaagacgcc
    10801 atacggttgc aggctaactt cacaaaaact atttgaaatc gctgccttac gtcctgcacc
    10861 gctcacgccg ctggtggcgt taatcgccgg ccactgattg aggtcaagaa gatcggcatc
    10921 aatcaacggt ttcagcgcca gctgtgccgc cgtcggataa cagcctggca ccgcaatcaa
    10981 attcgcttct tttaatttat taccgcacca ctccgccaga ccgtaggctg cctgttccag
    11041 cagttccggg tattgatggg taaagccgta atatttttca tagaaggtgg cgtcgttaac
    11101 acgaaacgcg ccggaaaggt cgaacaccac gcagcccgct tcaagaaact gcggcgctaa
    11161 atcgtggcta acttcatggg cggtggcgag aaacactacg tccacccctg ggctaaactc
    11221 gctgatatcc gacatcggct gcaacggcag ctcaacgatg ccttttagct gcggatgcaa
    11281 atcggagatt aactttcccg catcattgct ttgcgctgaa acagtcaaag cggttatgtt
    11341 catatgcgga tggcgattta cataggtcac tagctctgcg ccagcgtagc cgctggcacc
    11401 cacaatcagc gtattcaaca tcggggctat tcaccttctt atgtctggtt gccaggttaa
    11461 acgtaaaaca ttcaccttac ggctggtggg ttttattacg ctcaacgtta gtgtattttt
    11521 attcataaat actgcatgaa tattgatact atcatgacca gaggtgtgtc aacaatgaaa
    11581 aacaaattac cgccatttat cgagatttac cgcgctctga ttgccacacc ttcaataagc
    11641 gctacggaag aggcactcga tcaaagcaat gcagatttaa tcactctgct ggcggactgg
    11701 tttaaagatt tgggcttcaa tgtggaagtg cagcctgttc caggaactcg caacaaattc
    11761 aatatgctgg caagtatcgg acagggggct ggcggcttgt tgctggcggg gcataccgat
    11821 acggtgccat ttgatgacgg tcgctggacg cgcgatccgt ttacactgac ggagcatgac
    11881 ggcaagcttt acggcttagg caccgccgac atgaaaggct tttttgcgtt tatccttgat
    11941 gcgctacgcg atatcgacgt cacgaaactg aaaaaaccgc tctacattct ggcgactgct
    12001 gatgaagaaa ccagtatggc cggagcgcgt tattttgccg aaactaccgc cctgcgcccg
    12061 gattgcgcca tcattggcga accgacgtca ctacaaccgg tacgcgcaca taaaggtcat
    12121 atctctaacg ccatccgtat tcagggccag tcggggcact ccagcgatcc agcacgcgga
    12181 gttaacgcta tcgaactaat gcacgacgcc atcgggcata ttttgcaatt gcgcgataac
    12241 ctgaaagaac gttatcacta cgaagcattt accgtgccat accctacgct caacctcggg
    12301 catattcacg gtggcgacgc ttctaaccgt atttgcgctt gctgtgagtt gcatatggat
    12361 attcgtccgc tgcctggcat gacactcaat gaacttaatg gtttgctcaa cgatgcattg
    12421 gctccggtga tcgaacgctg gccgggtcgt ctgacggtcg acgagctgca tccgccgatc
    12481 cctggctatg aatgcccacc gaatcatcaa ctggttgaag tggttgagaa attgctcgga
    12541 gcaaaaaccg aagtggtgaa ttactgtacc gaagcgccgt ttattcaaac gttatgcccg
    12601 acgctggtgc tcggtccggg ttccatcaat caagctcatc agcctgatga atatctggag
    12661 acgcggttta ttaaacccac ccgtgagttg attatccagg taattcacca tttttgctgg
    12721 cattaaaacg taggccggat aaggcgctcg cgccgcatcc ggcaccgttg ccaaactccg
    12781 gtgccgcaat aatgtcggat gcgatgcttg cgcatcttat ccgacctaca cctttggtgt
    12841 tatgtatggc gattttttaa catttccata agttacgctt atttaaagcg tcgtgaattt
    12901 aatggcgtaa attcctgcta tttattcgtt tgctgaagcg atttcgcagc atttgacgtc
    12961 accgctttta cgtggcttta taaaagacga cgaaaagcaa agcccgagca tattcgcgcc
    13021 aatgcgacgt gaaggataca gggctatcaa acgataagat ggggtgtctg gggtaatatg
    13081 aacgaacaat attccgcatt gcgtagtaat gtcagtatgc tcggcaaagt gctgggagaa
    13141 accatcaagg atgcgttggg agaacacatt cttgaacgcg tagaaactat ccgtaagttg
    13201 tccaaatctt cacgcgctgg caatgatgct aaccgccagg agttactcac caccttacaa
    13261 aatttgtcga acgacgagct gctgcccgtt gcgcgtgcgt ttagtcagtt cctgaacctg
    13321 gccaacaccg ccgagcaata ccacagcatt tcgccgaaag gcgaagctgc cagcaacccg
    13381 gaagtgatcg cccgcaccct gcgtaaactg aaaaaccagc cggaactgag cgaagacacc
    13441 atcaaaaaag cagtggaatc gctgtcgctg gaactggtcc tcacggctca ccctaccgaa
    13501 attacccgtc gtacactgat ccacaaaatg gtggaagtga acgcctgctt aaaacagctc
    13561 gataacaaag atatcgctga ctacgaacac aaccagctga tgcgtcgcct gcgccagtta
    13621 atcgcccagt catggcatac cgatgaaatc cgtaagctgc gtccaagccc ggtagatgaa
    13681 gccaaatggg gctttgccgt agtggaaaac agcctgtggc aaggcgtacc aaattacctg
    13741 cgcgaactga acgaacaact ggaagagaac ctcggctaca aactgcccgt cgaatttgtt
    13801 ccggtccgtt ttacttcgtg gatgggcggc gaccgcgacg gcaacccgaa cgtcactgcc
    13861 gatatcaccc gccacgtcct gctactcagc cgctggaaag ccaccgattt gttcctgaaa
    13921 gatattcagg tgctggtttc tgaactgtcg atggttgaag cgccccctga actgctggcg
    13981 ctggttggcg aagaaggtgc cgcagaaccg tatcgctatc tgatgaaaaa cctgcgttct
    14041 cgcctgatgg cgacacaggc atggctggaa gcgcgcctga aaggcgaaga actgccaaaa
    14101 ccagaaggcc tgctgacaca aaacgaagaa ctgtgggaac cgctctacgc ttgctaccag
    14161 tcacttcagg cgtgtggcat gggtattatc gccaacggcg atctgctcga caccctgcgc
    14221 cgcgtgaaat gtttcggcgt accgctggtc cgtattgata tccgtcagga gagcacccgc
    14281 cataccgaag cgctgggcga gctgacccgc tacctcggta tcggcgacta caaaagctgg
    14341 tcagaggccg acaaacaggc gttcctgatc cgcgaactga actccaaacg tccgcttctg
    14401 ccgcgcaact ggcaaccaag cgccgaaacg cgcgaagtgc tcgatacctg ccaggtgatt
    14461 gccgaagcgc cgcaaggctc cattgccgcc tacgtgatct cgatggcgaa aacgccgtcc
    14521 gacgtactgg ctgtccacct gctgctgaaa gaagcgggta tcgggtttgc gatgccggtt
    14581 gctccgctgt ttgaaaccct cgatgacctg aacaacgcca acgatgtcat gacccagctg
    14641 ctcaatatcg actggtatcg cggcctgatt cagggcaaac agatggtgat gattggctat
    14701 tccgactcag caaaagatgc gggcgtgatg gcagcgtcct gggcgcaata tcaggcacag
    14761 gatgcattaa tcagaacctg cgaaaaagcg ggtattgagc tgacgttgtt ccacggtcgc
    14821 ggcggttcca ttggtcgcgg cggtgcacct gcccatgcgg cactgctgtc acaaccgcca
    14881 ggaagcctga aaggcggcct gcgcgtaacc gaacagggcg agatgatccg ctttaaatat
    14941 ggtctgccag aaatcaccgt cagcagcctg tcgctttata ccggggcgat tctggaagcc
    15001 aacctgctgc caccgccgga gccgaaagag agctggcgtc gcattatgga tgaactgtca
    15061 gtcatctcct gcgatgtcta ccgcggctac gtacgtgaaa acaaagattt tgtgccttac
    15121 ttgcgctccg ctacgccgga acaagaactg ggcaaactgc cgttgggttc acgtccggcg
    15181 aaacgtcgcc caaccggcgg cgtcgagtca ctacgcgcca ttccgtggat cttcgcctgg
    15241 acgcaaaacc gtctgatgct ccccgcctgg ctgggtgcag gtacggcgct gcaaaaagtg
    15301 gtcgaagacg gcaaacagag cgagctggag gctatgtgcc gcgattggcc attcttctcg
    15361 acgcgtctcg gcatgctgga gatggtcttc gccaaagcag acctgtggct ggcggaatac
    15421 tatgaccaac gcctggtaga caaagcactg tggccgttag gtaaagagtt acgcaatctg
    15481 caagaagaag acatcaaagt ggtgctggcg attgccaacg attcccatct gatggccgat
    15541 ctgccgtgga ttgcagagtc tattcagcta cggaatattt acaccgaccc gctgaacgta
    15601 ttgcaggccg agttgctgca ccgctcccgc caggcagaaa aagaaggcca ggaaccggat
    15661 cctcgcgtcg aacaagcgtt aatggtcact attgccggga ttgcggcagg tatgcgtaat
    15721 accggctaat cttcctcttc tgcaaaccct cgtgcttttg cgcgagggtt ttctgaaata
    15781 cttctgttct aacaccctcg ttttcaatat atttctgtct gcattttatt caaattctga
    15841 atataccttc agatatcctt aaggaattgt cgttacattc ggcgatattt ttttcaagac
    15901 aggttcttac tatgcattcc acagaagtcc aggctaaacc cctttttagc tggaaagccc
    15961 tgggttgggc actgctctac ttttggtttt tctctactct gctacaggcc attatttaca
    16021 tcagtggtta tagtggcacc aacggcattc gcgactcgct gttattcagc tcgctgtggt
    16081 tgatcccggt attcctcttt ccgaagcgga ttaaaattat tgccgcagta atcggcgtgg
    16141 tgctatgggc ggcctctctg gcggcgctat gctactacgt catctacggg caggagttct
    16201 cgcagagcgt tctgtttgtg atgttcgaaa ccaacaccaa cgaagccagc gagtatttaa
    16261 gccagtattt cagcctgaaa attgtgctta tcgcgctggc ctatacggcg gtggcagttc
    16321 tgctgtggac acgcctgcgc ccggtctata ttccaaagcc gtggcgttat gttgtctctt
    16381 ttgccctgct ttatggcttg attctgcatc cgatcgccat gaatacgttt atcaaaaaca
    16441 agccgtttga gaaaacgttg gataacctgg cctcgcgtat ggagcctgcc gcaccgtggc
    16501 aattcctgac cggctattat cagtatcgtc agcaactaaa ctcgctaaca aagttactga
    16561 atgaaaataa tgccttgccg ccactggcta atttcaaaga tgaatcgggt aacgaaccgc
    16621 gcactttagt gctggtgatt ggcgagtcga cccagcgcgg acgcatgagt ctgtacggtt
    16681 atccgcgtga aaccacgccg gagctggatg cgctgcataa aaccgatccg aatctgaccg
    16741 tgtttaataa cgtagttacg tctcgtccgt acaccattga aatcctgcaa caggcgctga
    16801 cctttgccaa tgaaaagaac ccggatctgt atctgacgca gccgtcgctg atgaacatga
    16861 tgaaacaggc gggttataaa accttctgga tcaccaacca gcagacgatg accgcccgca
    16921 ataccatgct gacggtattt tcgcgccaga ccgacaagca gtactacatg aaccagcaac
    16981 gtacgcagag tgcgcgtgaa tacgacacca acgtgctgaa gccgttccag gatgtgctga
    17041 atgaccctgc gccgaagaaa ctgatcatcg ttcatctgct gggtacgcat atcaaataca
    17101 aataccgcta cccggaaaat cagggcaagt ttgatggcaa taccgatcat gttccgccag
    17161 gattaagcgc agaagagctg gaatcatata acgattatga caacgctaac ttgtataacg
    17221 atcatgtggt tgccagcctg attaaagact ttaaagcggc agacccgaac ggattcctgg
    17281 tttacttctc tgaccacggt gaagaggttt acgacacgcc gccgcacaaa actcaggggc
    17341 gtaacgaaga caacccgacg cgccacatgt acaccattcc gttcctgctg tggacgtcgg
    17401 aaaaatggca agcgactcat ccccgtgatt tctcacagga tgtcgatcgt aaatacagcc
    17461 tggcggaact gatccacacc tggtcagatt tggcgggctt atcttacgac ggttacgatc
    17521 caacccgttc agtggtgaat ccgcagttca aagaaactac ccgctggatt ggtaacccgt
    17581 acaagaaaaa cgcgctgatc gattacgaca ctctgccgta tggcgaccag gtaggtaatc
    17641 agtaattatc agccaggcgc tatttgccgg atgcgacgct tgacgcgtct tatccggcct
    17701 acagatcgcg gcggtaggct ggataaggcg tttacgccac atccggcaat acaactgccg
    17761 caatgtttac atcgaactcc cctcaggcca cacttttcag gtggcctttt ttaataatgc
    17821 cagttactgt tttcccgtct acatacctaa gggaataaca tgtatcacga catcagctat
    17881 ctgctctccc gcctgatcaa cggcccgctg tccctgcgcc agatttactt tgccagcagt
    17941 aacggcccgg tgcccgatct tgcgtatcag gtcgattttc cacggctgga aattgtgctg
    18001 gaaggtgagt ttgttgatac cggcgctgga gcaacgttag ttcccggcga tgtgctgtac
    18061 gttgccgctg gtggctggaa tttcccacaa tggaaaacac ccactaccac ctttagcgtg
    18121 ctgtttggca aacagcaact cggcttcagc gtcgtgcaat gggatggcaa acaatatcaa
    18181 aatctggcga agcaacacgt cgcccgacgc ggcccacgta taggttcttt tctgctacaa
    18241 acgctcaatg aaatgcaaat gcagccgcag gagcagcaaa cggcaaggct tatcgtagcc
    18301 agcctgctta gccactgccg cgatttgctc ggcagccaaa tccagaccgc ctcacgcagc
    18361 caggcactat ttgaagctat tcgcgattat atcgacgaac gctatgcctc cgcgcttacc
    18421 cgcgaatctg tcgcacaggc attctatatt tcaccaaact atctctcgca cctgtttcaa
    18481 aaaacggggg ccattggttt taacgaatac ctgaatcaca cgcgactgga gcacgctaag
    18541 acgttattga aaggctatga cctgaaggta aaagaagtgg cgcacgcctg cggctttgtc
    18601 gacagcaact acttctgccg tctgtttcgt aaaaacaccg aacgctcgcc gtcggaatat
    18661 cgccgacagt accacagcca actgacagaa aaaccgacta ctccagaata agatgggttt
    18721 gctgcggcgc agaaagcact ttgcgcaccg cgctcattac ccgctgcggc tcacgcagga
    18781 atgcgtagat gctgcattgc acatagcggc aatgttcaaa tcgctcggca ccggcaagct
    18841 cgatatccgt aatcaacaga gcaacatccg cccgacggat atcctcgtcc gctaaacgat
    18901 tctccgttcc cagcgcgccc tgagtttcaa tgctgacgcc ccacttctct aactggcaca
    18961 acttttccag ccgttccgcc gccatataag tatgcgccac gccgcttacg caggcggtta
    19021 ctgccaccag gtatgccatt ttaacctccc acggtaacct gaaatccggc ccgttctgcc
    19081 atttcgcgca tcgttgccac atcggctgat gacggcgcag caacatcctt catcgaccat
    19141 gttttcccca gcaggcggta tttcggctcg ccgtactgat gaaacggcaa cagatggatc
    19201 tgcctgatat tcagcgggat cagcacgtcc agcgcctgct gcatattctc ccggctgagt
    19261 gtgaaaccgg ggatcagcgg caaacgcggg atcacgttga caccctcact caccagcaaa
    19321 cgcaggttct ccagtacgcg tggcaggttc atcttcacca catcccgcgc ctgagtcgcg
    19381 tccataattt ttaaatcgaa caacacttca tcgcacaatt tcgccagcgg taacagcttg
    19441 ctggctggtg cgtctccggc agtttcaatg gcacatgaga caccccacag ccgcagtcgc
    19501 tgtaaaaaac gggtagcaaa ctccgcctgc attaacactt cgccgccaga aagcgtgacg
    19561 ccgccgccgg acgtgcgaaa aaaaatgtca tctttcatca cttcccgttc cagagcgtca
    19621 aggctgatat cgcgaccaat ccgttcaaac gccccggagg ggcattcatc cgcatcacgc
    19681 aaacatttcg cacagtgcag acatttcgcc tctctgcgta ccgtctggat tttgccggag
    19741 atcgactccg gattagcaca ccacgggcaa agatgcggac agcctttaaa aaagaccacc
    19801 gtacgaatgc cctcgccgtc attcagtgaa taacgctgaa tgttgaaaat gcgcgccaca
    19861 tcattgaggc gcgtttccac aacgttacag ctgatgcgct gtccggcgga tgatgtcatc
    19921 ctggatctcc ttcgacagtt cgacaaagaa ggcgctgtat ccggcaacgc gcaccaccag
    19981 cccggcataa tcttgtgggc gctgttgcgc ttcccacaac gtgtcggcgt tcaccacgtt
    20041 aaactgaata tgctgcaact taagctgggt aaacgcccgt aagaagtcgg ccagtttgcg
    20101 taatcccgct tcaccttcca gggtcgccgg agtgaatttc acgttcagca acgtaccgtt
    20161 agacagcagc gtattatcga gcttactgac tgacttcagt accgctgttg gcccttgttc
    20221 gtcctggccc agcataggtg acaagccgcc gtctgccagc tgttctccgg caaaacgacc
    20281 gtctggcgtc gcgccaacca ccgatcccaa cgggacgtga gcagaaacgg tatacgatcc
    20341 cggcgtgaag taaccaccgc gcgggttctg gtatttttcc acttctttgc agtagtggcg
    20401 caacagttcg gcgctaatgt tatccacctc gtcgatatcg ttaccatatt tctcaaagcg
    20461 gttaattaag cgagcgcgga ctttttcgcc ttctggcgtt gcaaagttgg cttttaatac
    20521 cgacagcaat tcgtcaaaac ttaaacgctg ttgctcaaaa accatccctt tcaacgcatg
    20581 gagagaatcg ctcaggttgg cgataccgat cccctgtacg ccggagaagt tataacgcgc
    20641 gccgccatcg gtaatatcgc gacctttttc cagacaatcg ctgataaaag acgagagcag
    20701 cggtacaggt gcccagtcgc gatggccgat atcacaaata ttgctgccct caaccatcag
    20761 ggtgatgtag tggctgatct tggcgcggat ctgctccagt aaaccttcat aagtcagcgc
    20821 agcattgcct tcattttcat gcaggcagat ttccatcact ttcagcagat taaacatcgc
    20881 gatgtcatgc aagccgtagg ttctgccggg aatagataat tccacacagc ccactacgga
    20941 atagtcgcgc gcatcttcca gcgaaacgcc acggttgagg aacgctggta ccaccacttc
    21001 atcgttaaag atttgcggaa taccggtgcc gaggcgaatg gtttcggcgg ttttcatcag
    21061 gaatggcgtg tcgatcaagg cgttagtgcg cacgccgagg ttcggttgcg gtaattgcac
    21121 gctttgatag gcgtcaaggc aaaggaacga aagcacgttc accgcgctac gtccgttctc
    21181 ggttaacccg ccgagcagtg cggtatagcc ggtcgggaaa cctgcgaaat aacgcgcgct
    21241 gctggtggag cgcaacagca cgatgtcgtt gcatttcacc cataaagatt cgagcagttc
    21301 tttcaggaac gccggatctt cgccctgggt taaagatgcc tgatagaacg gcaacatata
    21361 ctggtcgaag cgccctaaag acagcgaact ggcgttggat tcgtattgca gaatgatgtt
    21421 catgtaccag aataactggc acgcctgcca gaacgtctgc ggcttatgtt cggcgttatg
    21481 gcgagagatc tccgcaatag tcagcagttc ttcgcgacgc tgggcatctg tgcagtttgc
    21541 cgccatcgtt tccgccagta cagcgtaacg caaaatgtgt ttctgcgagg cttccagcag
    21601 taacagcgct gcctgataaa agtgattctc cggctgttgc tgacaatgtt gctgcatctg
    21661 tgccaccaac tcccccagcc cgtgattcaa caggcgtggg taatcaataa taatgtgccc
    21721 ctggccttta tccgtctggt taatgctgaa aatctgcgtg ctggtcgcgg cttttacttc
    21781 atccgtcatc tgcccgttga tgaaatcttt catcgaacgt ttttcccagt acgggaacaa
    21841 ctcttcacga tagatacgtt tatcttcttc gctgatagca aagcggtcct gcggacgcgt
    21901 cgggaattga tccagctctt tcagcagcca gtaagggtcc atttccggcg acataatccc
    21961 ggcgcgcggt tttacggtgc ggttaccggc aatcagttct tcatcacgaa tcgaaatttc
    22021 aacatgttca aggatatacg ctgttgcttt cgcccggcgc aatatcaccg gttcgccttc
    22081 ggtttgccga tggctggcgg tataaagcag cgcccgctcc agcgagattt cacgggtatt
    22141 ggcaaacagt gcagttttga ggcgagagat acgattcgtc atgaggaact cctgtgggaa
    22201 agcgaacccg cccttgcgag cgggagaaga acttaagcgg tttgcgccag gtgagcttca
    22261 attttgctca taatggcgtc agcacgtttt actgcatcgc tgatgttgac gcgcacgatg
    22321 gtcttgccag caaaacgctc ttcaaacttg atgccgatat ctttggtcag aatcaccata
    22381 tcagcgctcg ccacatcttc cgcagtcagt tcattttcca gaccaattga cccctgggtt
    22441 tctactttca cttcccagcc tttcgctttc gcggcacttt cccgcgcctc tgctgccata
    22501 taggtatggg caacacctga aggacatgcg gttactgcaa taattttcgt catggctcgt
    22561 tcctcaatta attaatttca aaatccaaat ccaggtcgtc ttctttttca tcagtcgaag
    22621 acccattttt acgcgccaga cttttcagca cgttcacaca aacagccgtc accactgctc
    22681 cgacagccac tgctgcgata taacccagct tgccttcaac caccggcagc acaatcagac
    22741 caccccagcc tgcatagcac tgcgcaccga ccagcgccgc agttactgca ccacaaactg
    22801 aaccgaccat gatggaagga atgacacgca gcggatcggc agcggcgaaa ggaatcgccc
    22861 cttcagtaac gccaacacag cccatcacca gtgccgcttt gccggtttcg cgctcttctg
    22921 cggagaaatt tttacgacca atcagcgtcg ccagccccat ccccagcggc gggatacaaa
    22981 tacccacggc agcgatgacc accacggtat aaacaccctg agcaacgcaa atcagcatga
    23041 aggcataggc tactttgtta accggaccgc ccatatcgaa cgccagcatc agacccatga
    23101 tcaccgccag cataacaatg ctgccctgct gcatcccctg aagccactga gtcaggctgt
    23161 tggtcaacgc ccctacaggc tcgcccaagc cccacatcat gatgcctgcg gtaatcagtg
    23221 tgccgacgat aggaataatg aagataggca tcaccgagcg cagaacttta tgcaccggaa
    23281 ttttcttcag gtaatgcacc acgatgccgc cgataatccc ggcgatcagt gcaccaaaga
    23341 agcccgcacc aaagctgtta ccaacccagg caccgatagc gcacggagcc agcgcagaac
    23401 gctctgcaat ggagtaacca atgtaagcgg cgaggaaagg caccatcagc gtcaaacctg
    23461 caacgccgat atcaaacagt tttttcaaat tcggatcggc tacggcatcc ggcactgcgc
    23521 ctttgccata caacatgacg gaaaccgcca gcaaaatacc gcccgatacc acgaagggaa
    23581 tcatgtgtga aacgcccgtc attaaatgac gacgggtatt tttcaggatc tgcaccaact
    23641 cattcataag ctgctcccgg gcttgcgaaa gcccatgtcc atatttttga tggaggaaac
    23701 aataggcaat cgcaggcgga gcaaacagtg gataaaaagg ccatttactg gacttttgta
    23761 atatcagtac aaaaatgcga tccgcctcat aacttgcgat aaaccggaag catgccgcaa
    23821 aacggcgtct tgtgagacgc gtcgcaaatt gacggttaca ttacatttgt ccagcttttg
    23881 gcagatttgt cacatggcag gccgttgccg tgcgctctta tcctgtaaac agaaaaccgt
    23941 accgggagag aggcaatggc cctgattgtg gaatttattt gtgagctacc taacggcgta
    24001 catgcgcgtc cggcaagcca cgttgaaacg ctgtgtaata ctttttcatc acaaattgag
    24061 tggcataacc tgcgcactga ccgcaagggc aacgccaaaa gcgcccttgc gctgattggc
    24121 accgatacgc tggcgggcga taactgccag ttactgattt ccggggccga cgaacaggaa
    24181 gcgcaccagc gtttaagcca atggctgcgc gatgaattcc cccactgcga tgcgccgctg
    24241 gcggaagtta aatctgacga actggaacca ctgccggttt cactgaccaa tctgaatccg
    24301 caaattatcc gcgcccgcac cgtgtgcagc ggtagtgcag gcggcattct gacgccgatc
    24361 tcttctttag atctcaatgc gctgagtaat cttcccgcag ccaaagacgt tgacgccgag
    24421 caatccgcac tggaaaatgg cctgacgctg gtactgaaaa acattgagtt tcgtctgctg
    24481 gatagcgacg gtgctaccag cgcgatactg gaagctcacc gatccctggc tggcgataca
    24541 tctttacgtc agcacttact gacaggcgtc agcgagggat taagctgtgc cgaagcgatt
    24601 gtcgccagtg cgaatcactt ttgcgaagag ttcgcccgtt ccagcagcag ctacctgcaa
    24661 gaacgtgccc tggacgtacg cgacgtctgc ttccagttac tccagcaaat ctacggtgag
    24721 caacgcttcc cggcaccggg caaactgacg cagcccgcca tttgtatggc tgatgaactg
    24781 actcccagcc agttcctcga actggataaa aatcacctca aaggtctgtt actgaaaagt
    24841 ggcggcacca cctcacatac cgtaattctt gcccgttcgt tcaacattcc gacactggtt
    24901 ggtgtagata ttgatgccct tactccgtgg cagcatcaaa cgatttatat cgacggcaac
    24961 gccggggcga ttgtggttga gccaggggaa gccgtggccc gttattatca gcaagaagcc
    25021 cgcgtacagg acgcccttcg tgagcaacag cgtgtctggc tgacccaaca agcccgtacc
    25081 gctgacggta tccgcattga aattgccgct aacatcgctc actccgtgga agcgcaggcc
    25141 gcattcggca atggtgcgga aggcgttggt ttgttccgca ctgaaatgct ctatatggat
    25201 cgcaccagtg caccgggcga aagcgagctg tacaacattt tttgtcaggc gctggagtct
    25261 gccaacggac gcagcattat tgtgcgcact atggacattg gcggcgacaa acccgttgat
    25321 tatctgaaca ttccggcaga agctaacccg ttcctcggtt atcgcgctgt gcgtatttat
    25381 gaagaatacg cctcgctgtt caccacacaa ctacggtcga tcctgcgcgc ctccgctcac
    25441 ggcagcctga aaatcatgat cccgatgatc tcctcaatgg aagagatctt atgggtgaaa
    25501 gaaaaactgg cggaagccaa acagcaactg cgtaacgaac acattccgtt tgatgagaag
    25561 atccagcttg gcattatgct ggaagtaccg tcggtgatgt tcatcatcga tcaatgctgc
    25621 gaagagattg atttctttag tattggtagt aatgacctga cgcaatatct gctggcagtg
    25681 gatcgcgata acgctaaggt tactcgtcac tacaacagcc tgaatccggc attcttgcgg
    25741 gcgctcgatt acgccgtgca ggcggtgcat cgccagggca aatggattgg tctgtgcggt
    25801 gagctgggag cgaaaggttc cgtgctgccg ttgctggtcg gcttagggct ggatgaactc
    25861 agcatgagcg caccatcaat tccggcggcg aaagcgcgga tgacgcaact tgatagccgt
    25921 gagtgccgca agttgctcaa ccaggcaatg gcctgccgta cttcgctgga agtggaacac
    25981 ctgctggcgc aattccgcat gacccaacag gacgcaccgc tggtcaccgc cgagtgcatc
    26041 acgctggaaa gtgactggcg cagcaaagaa gaagtgctca aaggcatgac cgataacctg
    26101 ctgctggcgg gccgctgccg ctatccgcgt aaactggaag ccgacttatg ggcgcgcgag
    26161 gccgttttct ctaccggtct gggctttagt tttgccattc cacacagcaa atcagaacac
    26221 attgagcaat ccaccatcag cgtggcgcgt ctgcaagcgc cggtgcgctg gggcgatgat
    26281 gaagcgcaat tcatcattat gttaaccctg aacaaacacg ctgcgggcga tcagcacatg
    26341 cgcattttct ctcgcctcgc tcgccgcatc atgcacgaag aattccgtaa cgcgctggtt
    26401 aacgccgcct ctgccgacgc tatcgccagc ctgctgcaac atgaactgga actgtaaaag
    26461 gaaacatcat ggaactgtat ctggacaccg ctaacgtcgc agaagtcgaa cgtctggcac
    26521 gcatattccc cattgccggg gtgacaacta acccgagcat tatcgctgcc agcaaggagt
    26581 ccatctggga agttctgccg cgtctgcaaa aagcgattgg tgatgagggc attctgtttg
    26641 ctcagactat gagtcgtgac gcgcagggta tggtggaaga agcgaagcgc ctgcgcgacg
    26701 ccattccggg cattgtggtg aaaatcccgg tgacttccga aggtctggcc gccattaaga
    26761 tgctgaaaaa agagggtatt actacgcttg gcaccgcagt gtacagtgct gcacaagggt
    26821 tactggccgc gctggcaggg gcaaaatacg ttgctccgta tgttaaccgc gtagatgccc
    26881 agggcgggga cggcattcgt acggttcagg agctgcaagc gctgttagaa atgcacgcac
    26941 cagaaagcat ggtgctggcg gccagcttta aaacgccgcg tcaggcgctg gactgtttac
    27001 tggcaggatg tgaatccatc accctgccct tagatgtagc gcaacaaatg ctcaacaccc
    27061 ctgcggtaga gtcagctata gagaagttcg aacacgactg gaatgccgca tttggcacta
    27121 ctcatctcta aaggagcaat tatggaccgc attattcaat caccgggtaa atacatccag
    27181 ggcgctgatg tgattaatcg tctgggcgaa tacctgaagc cgctggcaga acgctggtta
    27241 gtggtgggtg acaaatttgt tttaggtttt gctcaatcca ctgtcgagaa aagctttaaa
    27301 gatgctggac tggtagtaga aattgcgccg tttggcggtg aatgttcgca aaatgagatc
    27361 gatcgtctgc gtggcatcgc ggagactgcg cagtgtggcg caattctcgg tatcggtggc
    27421 ggaaaaaccc tcgatactgc caaagcactg gcacatttca tgggtgttcc ggtagcgatc
    27481 gcaccgacta tcgcctctac cgatgcaccg tgcagcgcat tgtctgttat ctacaccgat
    27541 gagggtgagt ttgaccgcta tctactgttg ccaaataacc cgaatatggt cattgtcgac
    27601 accaaaatcg tcgctggcgc tcctgcacgt ctgttagcgg cgggtatcgg cgatgcgctg
    27661 gcaacctggt ttgaagcacg cgcctgttcc cgtagcggcg ctaccactat ggcgggcggc
    27721 aagtgcaccc aggcggcgct ggcactggca gaactgtgct acaacactct gctggaagaa
    27781 ggcgaaaaag cgatgcttgc cgccgaacag catgtagtaa cccctgcgct ggaacgcgtg
    27841 attgaagcga acacctattt aagcggtgtt ggttttgaaa gcggcggact ggcggcggct
    27901 catgcggtgc ataacggcct gaccgctatc ccggacgcgc atcactatta tcacggtgaa
    27961 aaagtggcat tcggtacgct gacgcagctg gtactggaaa acgcgccggt tgaggaaatc
    28021 gaaaccgtag ctgcatttag ccatgcggta ggtttgccaa taactctcgc tcaactggat
    28081 attaaagaag atgtcccggc gaaaatgcga attgtggcag aagcggcatg tgcagaaggt
    28141 gaaaccatcc acaacatgcc tggcggcgcg acgccagatc aggtttacgc cactctgctg
    28201 gtagccgacc agtacggtca gcgtttcctg caagagtggg aataacctac tccaaactcc
    28261 cggcttgtcc gggagtttga acgcaaaatt gcctgatgcg ctacgcttat caggcctacg
    28321 caatctctgc aatatattga atttgcgtgc tttttaggcc agataaggcg ttcacgccgc
    28381 atccggcact ctgtgccagt aatctgaaac tcctacgttg ttcaggagtt ttttatccgc
    28441 ttctggacat tttctctaca gaacaatcgt tagcccggaa ggtcgaatct gtgactctta
    28501 ttttcacgga cgaaccagat gaaagcttca ctggcgctgc tcagcctgct aacggcattt
    28561 accagccact ccttaaaatc tcccgccgtt ccaccaaccg tggtacaaat ccaggccaat
    28621 accaaccttg ccatcgcaga cggtgccaga cagcaaatcg gcaacacgct attttacgat
    28681 ccggcgtatg tgcggcttac ctatcctggc ggtgatgtcc cgcaagaacg cggtgtatgt
    28741 tccgatgtgg tgatccgtgc attgcgcagc cagaaggtcg atttgcagaa actggttcac
    28801 gaagatatgg cgaagaattt tgccgagtac ccgcaaaaat ggaagttaaa gcgcccggac
    28861 agcaacatcg atcaccgtcg ggtgcctaat ctggaaacct ggtttagccg ccacaacaaa
    28921 acacgcccca tcagtaaaaa tgccggtgac tatcaagcgg gcgatattgt ctcctggcga
    28981 ttagataacg ggctggcgca tattggggtg gtgtcagatg gcttcgcccg cgacggtacg
    29041 ccactggtga tacataacat tggcgcaggc gcgcaggaag aagatgtgct gtttagctgg
    29101 cggatggtgg ggcattatcg ttattttgtt aaataagcga tcgccccaca tgaagaaaaa
    29161 attcagatgc tttttacact gacagcttct tttttcttac ggctcaccag cgccagtgcc
    29221 agcacaatca gcacaatacc gctaccttca acggcccccg gattctcacc gagcagccac
    29281 caggaaaaga gtacgccgca aacgggaacg gccagcgtgc ttaagctggc aatactggca
    29341 ggcaagtttt tcaatacaaa caaccataag ctccacgcca gcgccgtcgc cagaatcgca
    29401 ctgtaggcca gcgcccagaa cacggtgggc tgccagtcaa tttcacgttg cggcaccagt
    29461 aaagcgacca cactcatcac cagcgccgca tagagcatct gccaggatgt taacgataat
    29521 aaatccacgc gcggatgacg ggtgtatagg cgtttagcaa caatcgcgct cgccccccaa
    29581 ctaacaccgg agaggattgc cagcatggca cttttcatcg aagagaaatc gagttgccac
    29641 ggctgcaaca ccaaaaataa gccgaaagcg gcaatcagaa tcgcgaaata ttgcccacgt
    29701 cgcaggcgtt caccgagaaa caacgcggcg aaaatcacca cccagaacgg catggtatag
    29761 ctcaggatcg ccaccttccc cgcacctccg ctgaccaacg cccactgcgc cagaccaacc
    29821 atcccgcagg tttgtaacag ggcaatggct aaggtgtatt taaacggcgt cgggtgcatt
    29881 ccgcgaccac gtaataaaag gacgatgaat aaaacgagag cgccgaaaat gcagcgtaag
    29941 gcggtaaagt cgaaggcacc gatgtaactg gtgacttgct tcatgaaaat ccagctataa
    30001 ctccagataa gtgtgagcac aaccaggcca ctgattgcca gtgggttgct ctttcctgcg
    30061 gcagacatga gagatccagt gtgtagtttt cctgtggaca ctatacgccg gtaaagaaac
    30121 ttcagcgact gcctgaaaga cagtcactga agaaggtcag attacagcag gtcgaaacgg
    30181 tcgaggttca tcactttcac ccatgccgct acgaagtctt taacaaactt ctcgtgggca
    30241 tcgctgctgg cgtaaacttc cgctaccgca cgcaggacag agttagaacc aaataccaga
    30301 tccgcacggc tggctgtgta tttcacttcg ccggtttcgc ggtcacgtcc ttcgaacagc
    30361 tctttcgatt cgtcagtcgc tttccactcg taacgcatat ccagcaagtt cacgaagaag
    30421 tcattgctca atacgccaac gcggtcagtg aagacgccgt ttttgctgct atcgaagttg
    30481 gcacccagta cacgcatccc gcccaccagc gcagtcattt ccggcgcggt cagcgtcagt
    30541 tgctgtgctt tgtcgatcag cagtgactcg gtggtggaaa cgtccagacg agcgcgatag
    30601 ttacggaaac cgtcagcaat tggctccagc agctcaaaca tctcaatgtc agtctgatcc
    30661 tgacgcgcat caacgcgacc cggcgcaaac ggtacatgaa tgctcaaacc tgcggcgctt
    30721 gcggctttct caacaccaac cacaccagcc agcacgatga tatccgccag cgaggcttta
    30781 ccagactctt tctggatttt ctccagaaca ggcagagcac gaacggctgc ggcgttcaca
    30841 tcccagtcgc gctgcggcat taatgccaga cgcgcaccgt tggcaccacc gcgtttgtcg
    30901 ccaccacgga aggtagaagc agatgcccag gccaccgata ccagctcact aacagacaga
    30961 ccagaatccg caatcgcgaa tttcagatcg ataatgtcct gctcggtcgg gttgtagatc
    31021 ggctgcggca gcggatcttg ccagatcaga tcttctttcg gcacttccgg cccgatgtag
    31081 cgagatttcg gccccatatc cctgtgcgtc agtttgaacc aggcacgggc aaaggcttcg
    31141 ttgaacgcct gcggatcgtt gaggaaacga cgagagatct tctcgaactc aggatcaaaa
    31201 cgcagcgtca ggtcggtcac cagcattgtc ggtttacgtt tcttcgacgg atcgaacgga
    31261 tccgggataa tttccggtgc gtctaccgct tcgaactgga ttgctccagc cggactgcgg
    31321 gtctgtaccc actcatattt gaacaggttc tcgaagaaat agttgctcca ctgggtcggc
    31381 gtctgggtcc agacaacttc cagaccagag gtaatggcat ctgcgccaac gccgctgccg
    31441 taagtgctcg cccagcctaa accttgttct tcaatcggtg cagcttctgg atcaggacct
    31501 acatttgatg tcggaccggc accgtgagtt ttacccagcg tatgaccacc cgcaatcagc
    31561 gccacggttt cttcgtcgtt catgcccatg ttgccgaagg tcgcacggat agctgctgcc
    31621 gcagaaagcg gttcgccgct gtgatccggg ccttccgggt taacgtaaat cagacccatc
    31681 tcggttgcac ccagcggtgc tttcgccagc gcttccggat gacggtgagt cagccaggct
    31741 ttttcatcac cccagttaac atccagatcc ggttcccaga cgtcttcacg accggcacca
    31801 aaaccgaagg tacggaagcc ggagttttcc agcgccacgt tacctgcgag gataaacagg
    31861 tcggcccagg agattttctg accatatttc tgtttgattg gccacaacag gcgacgcgct
    31921 ttatcaaggc ttacgttatc cggccaggag ttcagcggtg caaaacgttg ctgaccacga
    31981 cccgcgccgc cgcgtccatc gattgaacgg taagtacctg cgccgtgcca ggccatacga
    32041 ataaacagac cggcgtagct gccccagtcg gctggccacc acggctgaga ttctgtcagc
    32101 agggctttca gatctttttt caggccgtag taatctaatt tgctgaattc tttgcggtag
    32161 tcaaagtcct cacccagcgg gttagaacga ttagaatgtt ggtttaacag gtcaacacgg
    32221 agttgatttg gccaccagtc gcgagtggtt gtgcccgccc ccgcgctctg gtcgtgaccg
    32281 ccctgatgga acgggcattt gccagtggct gtcgtgttat gaatatcgtc tgacgtgctc
    32341 atcaatgtgc tcccctctac agtgttaccg ttacgataca cagcgttaga gagaagttat
    32401 aattgaatta atccacggat gcgatagttg agatcttaca tattgttggt taaagagatg
    32461 taggtcaaat tgatcgtaat taagcttttt tgattatgtc cgaattcgga caaatgcttt
    32521 ataaaaaagg gttttagctt catatccttc aagtaatgag ggagaaaaca aggctgacaa
    32581 ccttattttc ccgccctcat ttcgaggcag cattttgtgc tctgtttaaa atttgtgatc
    32641 actgtgtgat tttcacaaaa gccacactat ttataaacca ggtcgaacac ccagcgtatg
    32701 gcaaatcgcg taactcattt cagcgcggtt aagcgtatag aagtggaaat ctttcactcc
    32761 ttcacggctt aaaatcttca ccatatccat ggcaatattc gcgcccacca gtttgcgggt
    32821 ttcggcatca tcatccaggc cgtcgaacat ttgcgccatc cacgccggaa tacgcacgtt
    32881 ggtcatatcg gcaaatttct tcgcctgttt aaagttagat accggcaaaa ttcccggaat
    32941 aatttccaca tcaatgcccg ccgatacaca gcggtcacga aaacgcaggt agctttcgac
    33001 atcgaagaag aactgagtaa tcgcgcggtt ggctccggca tcgactttgc gtttcagatt
    33061 aagcaaatcc gcctgagcgc tttttgcttc cgggtgaact tccggatacg ccgccacgga
    33121 gatatcgaaa tctgccactt cttttaatag cgtcaccagg tcagaagcat acatttctgg
    33181 cttaccactt cccggcggca gatcgccacg cagcgccacg atatgacgaa taccgttatt
    33241 ccagtagtcg cgtgcaatgg tgcgcaactc gtcgggcgtc gcatcaatgc aagtaagatg
    33301 cggtgccgct tccagaccag tgcgatcttt aatgccttta ataatgctgt gcgtacggtc
    33361 gcgctcgccg gagttcgcgc cataggtcac cgatacaaac ttcggtttca ggctgctaag
    33421 gcgatcgatg gagttccaca gggtctgctc catttcactg gtacgcggcg ggaaaaactc
    33481 gaacgaaacg ttaatctgcc cctggacttc tgccaggcgc tgattcaggg catcccgctg
    33541 gctggcgtga aaaaagctca taccttacct catcaatcgc ttgtagttat atgttgtgtt
    33601 gtgcacatct atccgtttag acgtccagat gtaaagatga aggaaaagcc gaagggcgtc
    33661 aaccgaaaaa tgaccaatga tggtgaggaa aaatcaggga agatgaaaaa acttcaggat
    33721 ggtaagaaaa agaaaatccg gtatgcaaag caaaccggac tgcaaatata aactaaccat
    33781 gtacttattg cttcttgccg gattcgtcgt aaacgcttaa tccggcctaa tcctatgata
    33841 attcaatata tttcattaga aaccataaac ccgaaaacat gagtaccggg cattattaaa
    33901 tttctgaaat tacaacaact gtgccagccg gttgatatcc gactgaatcg ccccggcggt
    33961 gacgtcgcgc cccgcgccag gcccacggat caccagcggg ttgtcgcgat accagcggct
    34021 ttcgatggca aagacgttat cgcacggcag cagtgatgcc agcggatggt cttcacgcac
    34081 cgcctccacg cccacacgcg ctttgccgtt ggcatcgaaa cgcgccacgt agcgcagcac
    34141 cagccccatt tcgcgggccg cttccagccg ttgcaccatc tgctcgttaa gttcatcgcc
    34201 attttcaaag aaatggtcga tgctgccgcc ttcgcaatga gcaggcacca gcgattccac
    34261 acgtacctgg tccggttcaa tgttgtaacc cgcttcacgc gccagaatta ccagcttgcg
    34321 cattacgtct ttgccggaga ggtcgtcacg cggatcaggc tcggttaagc cctgctgcca
    34381 cgcctgatcc accagctcgg taaacggcac gctaccgtcg aattgcagga acagccagga
    34441 gagcgtgccg gagaagatcc cgctgatcga caaaatagta tcgccgctgt cgatcagatc
    34501 gcgcacggtg tggttgatcg gcaagcccgc accgacggtg gcattgtaca gccagtgacg
    34561 cccggttttt tcgaaggcgt cgtggatctg gcgatattta ttgctgtcgc tggctcccgc
    34621 cagtttgttg gcgctgataa cgtggaaacc gtggctggcg aaatcaagat actgatcagc
    34681 aagctgctgg ctggcggtaa cgtccagcac cactaaatca tcatacggat gggcgcgcat
    34741 ccacaggaac aacgactctt catcctgctc aaccgcttca tcgttgaaga aggctaacgc
    34801 gcggctggcg tccagcccgt catagctcaa caggctgcgg cggctgtcca ccacacctgc
    34861 cagcacaaac tcaaagccgg tacgtgccga aagcgtgctc tgctcacggg cgaacagttc
    34921 cagccaacgg gaaccgatat tgcccttacc gaacaatacc aggccgatgc gtttttctgc
    34981 gcggaagacg gactgatgca gcccctgaat caggctttcg gtcgggccgg tgcgcagtac
    35041 tgccaccagg ctgatgccgt catcggactg ccaggtaaat tcgaccggct ggcctttcag
    35101 ttgctgccag aagcggtggc aatgcagcgg gttacgggtg acgcctgcac cgaccatcgc
    35161 caccagcgcc agcccctgac gcaggcgcag ttcgccaggt aatcccgctt cgtcgaggat
    35221 tttcagcgca ctgtcggcca cttctgaggt gtagcaaaat tgcagcaact ggcgatcgtt
    35281 atgtacgcca accgccagcg ggcgtacctg cgcgcgtttc aggatttggt cgatctcttt
    35341 atgcgccagt ttgaaatcct gactggcggg cacctgaaac tcaatcaaac agacatcatc
    35401 gtggctggtg acaatacgcg caccagtacc ggaggccagc acgcgttcaa tgcgcgtgga
    35461 accttgatcc ggcgtgtagc tacagcgcag ttgcaggtcg atttcgctgc cagaaaccgg
    35521 ctgtaaagta cgggcgtgaa gaacgggagc cgccaggcgc gccagttcgc tggcctcatc
    35581 cagacgcagc aacggcagca ggcaggcatc tttcacttta cgcgggtcgg cactgtatac
    35641 cccggcgacg tcgctccaga tggttacgcg agaaacaccc gccagcgcac cgatttgtgt
    35701 cgcggaatag tcggaaccgt tacgccccag cagcaccgtt tcaccggcgt tgttgcggct
    35761 gataaatccg gtcaccacca gacgtttgcc cggatgttgc accagcagct gttgcagcaa
    35821 cgggtaagaa agcccttcat caacctgcgg ttgtgcggcg cgttcagcgc gtaaaaactc
    35881 gcgggcatca agccaggccg ctggcagccc ttgttgatta agtaccgcag acatcaggcg
    35941 tgccgaccat acttccccgt ggcccaccac ttccgcatac actgcgtcgt taataccgct
    36001 gtcgagcagc gccgccaggc gctcaaggtc gctgacaaaa gcgctaatga ggctatcagc
    36061 ttcttcagcg ggtagcagac cgctaatcag atcgcactga tagcgacgca gcgtttgttg
    36121 aacctgatgc gcagagagac gatcggtctg gcttagtttc aaccagttaa tcaactggtt
    36181 agtggtgcta ccggcggcgg aaaccaccat catatcgtca ggctgagagt actccgccat
    36241 aatgcccgca acacgcaaat aacacttcac atcagccaga ctactgccac caaatttatg
    36301 cagttgacga cctttcgccc ctgcctgcgc aatcacactc atttttaccc cttgtttgca
    36361 gcccggaagc cattttccag gtcggcaatt aaatcttcgc catcttcaat accggtggag
    36421 atacgcagca gcgtctcgga gatcccggcg gcagcacgcg cttctggtgc catgcctgca
    36481 tgtgtcatgg ttgcggcgtg agagattaaa ctttccactc cccctaatga ttccgccagc
    36541 gtaaacaacg acagcccgcc caggaaacga cgcagcgtct gctcatcgcc atccagttca
    36601 aaactcaaca ttgcgccaaa gcctttttgc tggcgcgcgg caatttcatg cccctgattt
    36661 tccggcagcg acgggtgata cagttttttc accaacggct gggtttgcag atatttcaca
    36721 atcgcctgcg cgttgcgctg ggccagctcc atacgcggca ccagcgttcg caacccgcgt
    36781 agcagcagat agctgtcaaa cgcgccgccc gtcacgccaa tattgtttgt ccaccaggca
    36841 agttcagtga caacgtccgg gtctttagca atcaccacgc cagccaccac gtcagagtga
    36901 ccgttcagat atttcgtaca tgaatgcaac accagatcgg cacccaatgc cagcggattt
    36961 tgtaatgccg ggcttaagaa ggtgttatcc accacgctca ccgccccgac ttcccttgcc
    37021 agatggcaga ttttcgcaat atccacgacg cgtaacaatg gattacttgg gctttctacc
    37081 agtaccagtt taggtttttc tgccagcgct gcccgtaatg cctgttcatc gccttgatca
    37141 acaaacaaca cgcgatagca accgcgtttc gccagactgt cgaacaggcg atagctaccg
    37201 ccgtagcagt cgtgcggcgc aaccagcaga tcgccaggtt tcaaaaagac ggtcgttacc
    37261 aagtgaatcg cggacatgcc ggtattagta agtactgcgc cagcaccgcc ttccagttct
    37321 gccagcgcac gctgaaccac atcgcgcgtt gggttgccgc gacgcgagta atcatgcgcg
    37381 cgcggttcat taaatccggt aaagttatag gtgctggaaa gatggatggg agggacaacg
    37441 caaccatact gttcgtcgtc atttaacccg ctacgcactg cgatggtggc ctgtttacgc
    37501 gtcatgtgat gaagtttcct gggctttgtc ggtgaaatgt caggcaccag agtaaacatt
    37561 gtgttaatgg acgtcaatac atctggacat ctaaacttct ttacgtatag attgagcaaa
    37621 tcccaaatag ccgttaaaat tatatgcatt atcacgccga caggtgcatt acacgatgtc
    37681 acggtaacgc ctgtacggta aactatgcgg gtttacggtc agtacccaca taaattgtgt
    37741 ggtctggtct caatttattg acgaagagga ttaagtatct catggctgaa tggagcggcg
    37801 aatatatcag cccatacgct gagcacggca agaagagtga acaagtcaaa aagattacgg
    37861 tttccattcc tcttaaggtg ttaaaaatcc tcaccgatga acgcacgcgt cgtcaggtga
    37921 acaacctgcg tcacgctacc aacagcgagc tgctgtgcga agcgtttctg catgccttta
    37981 ccgggcaacc tttgccggat gatgccgatc tgcgtaaaga gcgcagcgac gaaatcccgg
    38041 aagcggcaaa agagatcatg cgtgagatgg ggattaaccc ggagacgtgg gaatactaaa
    38101 gcaaaaaaga gcggcgcgga gtggaatcgc ctgatgcgct acgcttatca ggcctacgtc
    38161 atattgcaat ttattgaatt tgcacgaact tgtaggccgg ataaggcgtt cacgccgcat
    38221 ccggcataaa caacgagcac gttgtctgcg acccaccgct ttttatacat ggacgtttaa
    38281 ctatgaaaaa caggctgctg atcctcagcc tgctggtttc tgtacctgcc tttgcctggc
    38341 agccacaaac cggcgacatc atctttcaga tctctcgctc atcgcaaagt aaagcgatcc
    38401 aactggcgac ccattccgat tatagccaca ccggtatgct ggtgatacgc aacaaaaagc
    38461 cctacgtttt tgaagcggtc ggcccggtga aatacacccc gctcaagcag tggatcgccc
    38521 atggtgaaaa gggcaaatac gttgttcgcc gcgttgaagg cggactgagt gttgaacaac
    38581 agcaaaaact ggcgcaaacg gtaaaacgtt atctcggtaa accgtatgat ttcagcttct
    38641 catggagcga cgatcgccag tactgttcgg aagtggtgtg gaaggtttac cagaacgcgc
    38701 tgggaatgcg cgtgggcgag cagcagaagt tgaaagagtt cgatctcagc aacccgctgg
    38761 tccaggctaa gctcaaagaa cgctacggca aaaatattcc gcttgaggaa acggtagttt
    38821 caccacaagc cgttttcgac gcgccacaac tcaccacggt tgccaaagag tggccgctgt
    38881 tttcgtggta atggatgatg aaaaaaataa ttcccgccgt agtctgtttg ttgctttgta
    38941 gttgcacgac ctttccgcaa actgtcgctc cggtaaacgg tgatgcctcc aattagttga
    39001 attaaggata taatactcgc ttttaaggtt gtttcatggt cacagttaac cttcattgcc
    39061 cccgttgcca gtccgttcag gtttaccgtc acgggcagaa cccaaaaaga catgatcgat
    39121 tccgcggccg tgactgtcac cgggtatttc agctcagtta ctgttacgag ccccgtaaac
    39181 cgggagttaa agaccaaatc gctgaaatga ctttcaacgg tgccggggtt cgcgatactg
    39241 cccgtacgct gaaaatcggc attaatacag tcatccgaac tttaaaaaac tctcgccacg
    39301 aagaataacg tcatccccgg tcgctcatgc tgatgtggca ctcatctgcg aacttagtca
    39361 gcaatggagc tttgtcggca gtaaagcgcg acagcactgg ctctggtacg tgtacaacac
    39421 gaaaactggt ggtgttctgg cctacacttt tggcccccgg actgacgaaa cctgtcgtga
    39481 attgctggcg ctgcttaccc ttttaccatc ggcatgttga ccactgacga atggggtagt
    39541 tacaccagag agttaccgaa ggaaaagcat ctgactggta agatttttac tcagcgcatt
    39601 gagcgcaaca atctgaccct gagaacccga atcaaacgtc tggcccgcag aaccatctgt
    39661 ttctcgcgct ctgtagaact tcatgaaaaa gtcatcggtg cttttatcga aaatatatgt
    39721 tctactaatt ggagtcatca cccttctgat gagctttcct tggatgatta ccagactgaa
    39781 tacacagcca aagattttta cctcattctg ctcttttttc tcaaatgaca tatattatat
    39841 tttacatcat attcataggc atatgacatt cccccgcccc cattatgtca ttgtgggttg
    39901 atgttgggct ttcataaaaa aaacatcttt ttttgaacta gcattaatta tatttacttt
    39961 atatattaaa atattttctc catctggaaa tattttagcc acacaatata aagcagctga
    40021 atccgaatta cttaaaaata tattatcatt acccataact ccagccatta aattactgga
    40081 gactaaagca aggaaataac aacattgtat tgccttcatt ttaattactc ccttgtctga
    40141 taattgtaac tccattccct ttagctttgg gattatattt tagataggtg ttatttggtg
    40201 ttcccaagta actgcttgta ttcttttttt cccattccat tcatataaga attcgttaaa
    40261 tctttgcttg aaaaatttag actatcataa acatcatttt cttttgttac tttatttcct
    40321 ttatcgtcag agtaaaaacc gtgagtgtga taatcgccta ctctctctga accttcaggg
    40381 cattttatat ttcgcaagtc tacactatca ttatcatttg aacttatcgg attcatgggg
    40441 aaatattcac cttgcttctt acatattagt ccaccatatt ctttattctc gttaattgat
    40501 tctccattac acat
//
LOCUS       DAJVUP010000014        40414 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.014, whole genome shotgun sequence.
ACCESSION   DAJVUP010000014 DAJVUP010000000
VERSION     DAJVUP010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40414
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.014"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(115..2436)
                     /locus_tag="OQQ75_000729"
     CDS             complement(115..2436)
                     /locus_tag="OQQ75_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HCS1975160.1"
                     /translation="MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFITRYRKEI
                     TGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELED
                     LYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALD
                     GARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTV
                     PSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRK
                     GVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDP
                     GLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELVAIGNGTASR
                     ETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
                     QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTR
                     VAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAS
                     TVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEK
                     PGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISS
                     LSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQ
                     NNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR"
     gene            complement(2533..3009)
                     /gene="greB"
                     /locus_tag="OQQ75_000730"
     CDS             complement(2533..3009)
                     /gene="greB"
                     /locus_tag="OQQ75_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312275.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HCS1975161.1"
                     /translation="MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSE
                     NADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHR
                     FRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP"
     gene            3237..3956
                     /gene="ompR"
                     /locus_tag="OQQ75_000731"
     CDS             3237..3956
                     /gene="ompR"
                     /locus_tag="OQQ75_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HCS1975162.1"
                     /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL
                     TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY
                     IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP
                     LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH
                     PRYIQTVWGLGYVFVPDGSKA"
     gene            3953..5305
                     /gene="envZ"
                     /locus_tag="OQQ75_000732"
     CDS             3953..5305
                     /gene="envZ"
                     /locus_tag="OQQ75_000732"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     EnvZ"
                     /protein_id="HCS1975163.1"
                     /translation="MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQ
                     QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWA
                     QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL
                     FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR
                     AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE
                     CNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHP
                     LSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVR
                     GDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG
                     "
     gene            complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="OQQ75_000733"
     CDS             complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="OQQ75_000733"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HCS1975164.1"
                     /translation="MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGY
                     ERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW
                     QHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEEL
                     AGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSM
                     MNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDD
                     GVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRV
                     SYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA
                     GTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRI
                     SIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQE
                     KAETLAKLFIDNFDKYTDTPAGAALVAAGPKL"
     gene            7382..9106
                     /locus_tag="OQQ75_000734"
     CDS             7382..9106
                     /locus_tag="OQQ75_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HCS1975165.1"
                     /translation="MDNVELSPATRWGMIATGLLQGLVCYLLIAWLAGKNHSWIVYGV
                     PATVAFSSVLLFSVISFKQKRLWGWLALVFIATTGMSGWLKWQTDGMNPWRAEKAIWD
                     FGCYLLLMAMLLLPWIQQSLRIRNCSSRYSYFYQSVWHNVLILLVIFLANGLTWLVLL
                     LWGELFKLVGIKFFNTLFFATDWFMYLTLGLVTALAVILARTQSRLIDSIQKLFTLIA
                     TGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASL
                     PWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGALAVLVLLVWSLGY
                     FVSIVWRNGQNPLVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKN
                     TPDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQEQVSEKV
                     LAENVLIAPGSVKPDVTFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAF
                     NDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTRPKAWRDLTVDGE
                     TLEINLSK"
     gene            complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="OQQ75_000735"
     CDS             complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="OQQ75_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417860.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HCS1975166.1"
                     /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNV
                     LAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENA
                     DLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGD
                     VDGKPAAGGMLLQVMPAQNAQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEV
                     TVYDPQDVEFKCTCSREHCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMD
                     IAEIRNNASPADPQVH"
     gene            complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="OQQ75_000736"
     CDS             complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="OQQ75_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HCS1975167.1"
                     /translation="MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK
                     PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMAMAR
                     KLNALTMPHPDRRPDKKERRDLLRFKHGDSE"
     gene            complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="OQQ75_000737"
     CDS             complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="OQQ75_000737"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP/IMP nucleotidase"
                     /protein_id="HCS1975168.1"
                     /translation="MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNG
                     VTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFL
                     EALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAE
                     ATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLI
                     PSLM"
     gene            complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="OQQ75_000738"
     CDS             complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="OQQ75_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular growth attenuator protein IgaA"
                     /protein_id="HCS1975169.1"
                     /translation="MSTIVIFLAALLACSLLAGWLIKVRSRRSQLPWTNAFADAQTRK
                     LTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGIST
                     DDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETR
                     GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFF
                     CLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQE
                     QINNISLGIIDLVYPAHWQPYIAQDLDQQTDIDIYLDCHVVRQGRYLSLHDEVKNFPL
                     QHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRV
                     GDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATAL
                     TEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLK
                     NALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARA
                     AQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNA
                     EGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQR
                     HRTRMMEIQAYYESCLNPQLITPSESLIE"
     gene            13744..14304
                     /gene="nudE"
                     /locus_tag="OQQ75_000739"
     CDS             13744..14304
                     /gene="nudE"
                     /locus_tag="OQQ75_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HCS1975170.1"
                     /translation="MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRP
                     TNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGF
                     GANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLE
                     DPDFNEARNVSALFLVREWLKGQGRV"
     gene            complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="OQQ75_000740"
     CDS             complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="OQQ75_000740"
                     /EC_number="2.4.1.129"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312265.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase/peptidoglycan
                     DD-transpeptidase MrcA"
                     /protein_id="HCS1975171.1"
                     /translation="MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRL
                     QIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIF
                     RAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEIL
                     ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRA
                     VARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLNEMVRQEMYNRY
                     GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNN
                     KITDTLKALPTYGPLLPAAVTSANPQGATAMLADGSTVALSMEGVRWARPYRSDTQQG
                     PTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQ
                     SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWQPKNSP
                     PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA
                     SFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT
                     QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFL
                     IKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW
                     IGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG
                     IVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF"
     gene            17141..17920
                     /gene="hofM"
                     /locus_tag="OQQ75_000741"
     CDS             17141..17920
                     /gene="hofM"
                     /locus_tag="OQQ75_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofM"
                     /protein_id="HCS1975172.1"
                     /translation="MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDII
                     KDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWL
                     SGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
                     ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDS
                     VAICGEGGFDPWEAVSVRQPLLPPPGGDFAIALGLALGKAY"
     gene            17920..18459
                     /gene="hofN"
                     /locus_tag="OQQ75_000742"
     CDS             17920..18459
                     /gene="hofN"
                     /locus_tag="OQQ75_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofN"
                     /protein_id="HCS1975173.1"
                     /translation="MNPPINFLPWRQQRRTAFLCFWLLMFVAPLLLAVGITLILRLTG
                     SAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLRKQRSQRQRQRQFTRDWQSALEAL
                     AALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
                     GRWQFEYQLTRKVSDEHVL"
     gene            18443..18883
                     /gene="hofO"
                     /locus_tag="OQQ75_000743"
     CDS             18443..18883
                     /gene="hofO"
                     /locus_tag="OQQ75_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofO"
                     /protein_id="HCS1975174.1"
                     /translation="MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDAL
                     IRLRASHHQQWATLYRLVDTTPFSEEKTLPFSPLDFQLPGAQLVSWHPSAQGGELALK
                     TLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG"
     gene            18873..19277
                     /gene="hofP"
                     /locus_tag="OQQ75_000744"
     CDS             18873..19277
                     /gene="hofP"
                     /locus_tag="OQQ75_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofP"
                     /protein_id="HCS1975175.1"
                     /translation="MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMV
                     GRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQ
                     GDTNEAMDSRTTVDADTRRTGGKAAKSDADGG"
     gene            19189..20427
                     /gene="hofQ"
                     /locus_tag="OQQ75_000745"
     CDS             19189..20427
                     /gene="hofQ"
                     /locus_tag="OQQ75_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA uptake porin HofQ"
                     /protein_id="HCS1975176.1"
                     /translation="MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQE
                     KLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIA
                     RQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
                     KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT
                     LGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK
                     QGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQA
                     DGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDG
                     KEYERRELVVFITPRLVSSE"
     gene            20828..21349
                     /gene="aroK"
                     /locus_tag="OQQ75_000746"
     CDS             20828..21349
                     /gene="aroK"
                     /locus_tag="OQQ75_000746"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004709337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HCS1975177.1"
                     /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG
                     ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY
                     LETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK
                     VVANQIIHMLESN"
     gene            21406..22494
                     /gene="aroB"
                     /locus_tag="OQQ75_000747"
     CDS             21406..22494
                     /gene="aroB"
                     /locus_tag="OQQ75_000747"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HCS1975178.1"
                     /translation="MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNET
                     LAPLYLDKVRGVLEQAGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVAL
                     GGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     ASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLSLDGPAMAYC
                     IRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAA
                     RTSERLGQFSSAETQRIITLLKRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEIRLIL
                     PLAIGKSEVRSGVSHELVLNAIADCQSA"
     gene            22586..23872
                     /gene="damX"
                     /locus_tag="OQQ75_000748"
     CDS             22586..23872
                     /gene="damX"
                     /locus_tag="OQQ75_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DamX"
                     /protein_id="HCS1975179.1"
                     /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDI
                     ELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQ
                     YMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGDKSIDLAGNATDQANGVQPAPG
                     TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVA
                     VNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEP
                     KPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA
                     GNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGV
                     YASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK"
     gene            23979..24815
                     /gene="dam"
                     /locus_tag="OQQ75_000749"
     CDS             23979..24815
                     /gene="dam"
                     /locus_tag="OQQ75_000749"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1975180.1"
                     /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN
                     TDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQ
                     DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF
                     YCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE
                     RHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPA
                     KK"
     gene            24833..25510
                     /gene="rpe"
                     /locus_tag="OQQ75_000750"
     CDS             24833..25510
                     /gene="rpe"
                     /locus_tag="OQQ75_000750"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCS1975181.1"
                     /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP
                     NLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT
                     LQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE
                     VRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE
                     LAKVSHE"
     gene            25503..26261
                     /gene="gph"
                     /locus_tag="OQQ75_000751"
     CDS             25503..26261
                     /gene="gph"
                     /locus_tag="OQQ75_000751"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HCS1975182.1"
                     /translation="MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE
                     RVITWIGNGADVLMERALAWARQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYY
                     SEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGG
                     DDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE
                     AIDLSQPDVIYQSINDLLPALGLPHSENQESKND"
     gene            26254..27258
                     /gene="trpS"
                     /locus_tag="OQQ75_000752"
     CDS             26254..27258
                     /gene="trpS"
                     /locus_tag="OQQ75_000752"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HCS1975183.1"
                     /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ
                     HAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG
                     ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI
                     AQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK
                     KIKRAVTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE
                     VADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAKP
                     "
     gene            27527..28432
                     /locus_tag="OQQ75_000753"
     CDS             27527..28432
                     /locus_tag="OQQ75_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709156.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975184.1"
                     /translation="MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELATECRSSVG
                     LTQAALKTLESSGAIRIERRGRNGSYLVEMDNKALLSHVDINNVVCAMPLPYTRLYEG
                     LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE
                     LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESL
                     QRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLL
                     RAVVDKHALLAHQQRVVSGEQEPSY"
     gene            28449..28811
                     /locus_tag="OQQ75_000754"
     CDS             28449..28811
                     /locus_tag="OQQ75_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417841.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HCS1975185.1"
                     /translation="METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTM
                     AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEE
                     GYLLANLYGLWMAANEEV"
     gene            28895..30058
                     /locus_tag="OQQ75_000755"
     CDS             28895..30058
                     /locus_tag="OQQ75_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfX family PLP-dependent enzyme"
                     /protein_id="HCS1975186.1"
                     /translation="MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKR
                     LIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLSVAHQ
                     GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLY
                     PGQESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQAR
                     DQLAKSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPANQQGDQSERIA
                     MLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITETNLKTVDDSSIDYTL
                     SLAGEFPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPKIVGRYDSLGNSLGA"
     gene            30058..31284
                     /locus_tag="OQQ75_000756"
     CDS             30058..31284
                     /locus_tag="OQQ75_000756"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS1975187.1"
                     /translation="MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQ
                     LPTLEKLGLINALGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRM
                     PFCDVIDRVEQALVSAGWQVERRGDELQFLWVNQAVAIGDNLEADLGQVYNITANLSV
                     ISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYD
                     NGFQVVHMGYGVDKKVQVPQKLYEAGVPTVLVGKVADIVSNPYGVSWQNLVDSQRIMD
                     ITLDEFNTHPTAFICTNIQETDLAGHAEDVARYAERLQVVDRNLARLVDAMQPDDCLV
                     VMADHGNDPTIGHSHHTREVVPLLVYQQGLAATQLGVRTTLSDVGATVCEFFRAPPPQ
                     NGRSFLSSLRFAGDTL"
     gene            31281..32157
                     /locus_tag="OQQ75_000757"
                     /pseudo
     CDS             31281..32157
                     /locus_tag="OQQ75_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417838.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase-related protein"
     gene            32168..32521
                     /locus_tag="OQQ75_000758"
     CDS             32168..32521
                     /locus_tag="OQQ75_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417837.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2620 domain-containing protein"
                     /protein_id="HCS1975188.1"
                     /translation="MKKIGVAGLQREQIKKTIEATAPGSFEVFIHNDMEAAMKVKSGQ
                     LDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSV
                     EHVEHAIPMLINHLK"
     gene            32533..33837
                     /locus_tag="OQQ75_000759"
     CDS             32533..33837
                     /locus_tag="OQQ75_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfT family protein"
                     /protein_id="HCS1975189.1"
                     /translation="MDLYIQIIVVACLTGMTSLLAHSSAAVFHDGIRPILPQLIEGYM
                     NRREAGSIAFGLSIGFVASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGA
                     IWGVLILTCLLPVNQLLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLV
                     AAVVVLMTRVVVVRYFPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVF
                     EERTSRIIKNLPYIAIVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLIN
                     QAALAEFMRGLGFVPLIATTALATGVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISA
                     EVLLLRSIGKWLGRYPSVRNASDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAV
                     AIYFLNESLGRPVQKMAAPVVAVMITGILLNVLYWLGLFVPA"
     gene            33849..34921
                     /locus_tag="OQQ75_000760"
                     /pseudo
     CDS             33849..34921
                     /locus_tag="OQQ75_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417835.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
     gene            complement(35073..35804)
                     /gene="phoB"
                     /locus_tag="OQQ75_000761"
     CDS             complement(35073..35804)
                     /gene="phoB"
                     /locus_tag="OQQ75_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417834.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PhoB"
                     /protein_id="HCS1975190.1"
                     /translation="MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQ
                     YNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATK
                     EKVIEQERVSAAPFCKKLNIPGNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEI
                     YVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQN
                     DKPVHVSELFCRANRITLTIDNKRH"
     gene            complement(35904..36689)
                     /gene="frlD"
                     /locus_tag="OQQ75_000762"
     CDS             complement(35904..36689)
                     /gene="frlD"
                     /locus_tag="OQQ75_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-kinase"
                     /protein_id="HCS1975191.1"
                     /translation="MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCI
                     TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADF
                     ALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHL
                     DFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVID
                     TMGAGDSFIAGFLCGWSAGMTLPQAMAQGTACAAKTIQYHGAW"
     gene            complement(36686..37516)
                     /gene="frlC"
                     /locus_tag="OQQ75_000763"
     CDS             complement(36686..37516)
                     /gene="frlC"
                     /locus_tag="OQQ75_000763"
                     /EC_number="5.1.3.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 3-epimerase"
                     /protein_id="HCS1975192.1"
                     /translation="MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL
                     KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEM
                     NAGYTLISAAHAGYLTPPNVIWGRLAENLSELYEYAENIGMDLILEPLTPYESNIVCN
                     ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTH
                     YIPGEGKMPLRELMRDIIERGYEGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
                     "
     gene            complement(37566..38588)
                     /gene="frlB"
                     /locus_tag="OQQ75_000764"
     CDS             complement(37566..38588)
                     /gene="frlB"
                     /locus_tag="OQQ75_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-phosphate deglycase"
                     /protein_id="HCS1975193.1"
                     /translation="MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDI
                     DRIYFVACGSPLNAAQAAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDY
                     GKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVV
                     LEMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGP
                     LRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTER
                     AINFVKQRTDNVIVIDYAEISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYY
                     GGLVEY"
     gene            complement(38609..39997)
                     /gene="frlA"
                     /locus_tag="OQQ75_000765"
     CDS             complement(38609..39997)
                     /gene="frlA"
                     /locus_tag="OQQ75_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine/psicoselysine transporter"
                     /protein_id="HCS1975194.1"
                     /translation="MTANSPLQRVGQEKGIAMGSQELQRKLGFWAVLAIAVGTTVGSG
                     IFVSVGEVAKAAGTPWLTVLTFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS
                     RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLPGKFIAAGLIIAFMLLHL
                     RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGI
                     SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISDLMPFDKL
                     ANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF
                     KCFGHVHPKYNTPDVSIILQGAQGLFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC
                     RKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAF
                     WAKRSRQLNALS"
     gene            complement(40242..40409)
                     /locus_tag="OQQ75_000766"
     CDS             complement(40242..40409)
                     /locus_tag="OQQ75_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfL family protein"
                     /protein_id="HCS1975195.1"
                     /translation="MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISIS
                     KIIGGCGPTAQ"
BASE COUNT         9348 a        10246 c        11112 g         9708 t
ORIGIN      
        1 tgtggaataa aaaggccgga gatattctcc ggcactttta tgtcaggcaa ggcgttcgtt
       61 gccagatgcg gcgtgaacgc cttatcgcgc aggtttaggg gccagtccgg gcgtttaacg
      121 ttttttgccc attgccgccg ccagcgcatc catcatcgcg ctattaccgg caggctgcgc
      181 ttcacgaccg cgtggtttgg ctgccgggcg gttgttttgc gggcgttcat taccgccgcc
      241 gcgacgggcg ttggtttcgc caggctgctc gtccagacgc atagtcaggg cgatacgttt
      301 acgctgaaga tccacttcca gcactttcac cttcacaatg tcgcccgctt tcaccacggt
      361 atgcggatct tccacaaact tgttcgacaa tgaagagatg tgaaccaggc cgtcctgatg
      421 cacgccgata tcgacaaacg cgccaaagtt ggtgacgttg gtcaccgcac cttcgaggat
      481 catacccggt tgcaggtcgt tcattgtctc gacgccatcg gcaaactgag cggttttaaa
      541 ttccggacgc ggatcgcgac ccggtttttc cagctctttg atgatgtcag ttactgtcgg
      601 cacaccgaat ttttcatcag taaagtcaga cgctttcagg ttacgcagtt cgctgctgtt
      661 acccatcaga tctttcagtg cctgctgtgt tgctgccaga atgcgttcca ccaccggata
      721 ggcttccggg tggacggtag aagcatccag cgggttatca ccgtggttaa tgcgcaagaa
      781 gcccgcgcac tgctcgaagg ctttcggccc cagacggctg actttcagca gttgctgacg
      841 gttctggaac tggccgttct catcgcgcca ggccacgatg ttttgcgcca tcatgcgcgt
      901 caggcccgcc acgcgggtta acagcggaac agaagcagtg ttgagatcga cgccaacggc
      961 gtttacgcag tcttctacta ctgcgtccag tttgcgggcc agttgcgtct ggctgacgtc
     1021 atgctgatac tgacctacgc cgatagattt cggatcgatt ttcaccagct ccgccagcgg
     1081 atcctgcaaa cggcgggcga tagacaccgc gccacgcagc gaaacgtcga gatccgggaa
     1141 ctcctgcgct gccagctcgg aagctgagta aaccgacgcg ccagcttcgc tgacgatcac
     1201 tttctgtgcg gtcactttcg ggaactgctt ctgcacgtcg agatagaaac gttcagtttc
     1261 gcgggaagct gtaccgttgc cgatcgccac cagttcaacg ttatgttttt cacacaaggc
     1321 agcaacggtc atcgctgctt ttgcggcttg tccggtgtgc gggtaaatgg tatcggtcgc
     1381 taccagtttg ccagtggcat cgaccaccgc cacttttacc ccagtacgca gacccggatc
     1441 gaggcccatc gttgcacgca gtccggcagg ggccgccatc agcagatcgt gcaggttacg
     1501 ggcaaagacg ttgattgctt catcttccgc gcgttcgcgc acggtaccca tcagttcggt
     1561 ttccagatgc atcagcacct tgatgcgcca ggtccagctc actacgcctt tgcgccagct
     1621 atccgccggg gcattgttca ggcgcaggcc aaggtgatcc atgatgattt gctcgcaata
     1681 gctctctttg ggcggctcat cgaactgcgg atcggcattc agcgaaagct ggagtacgcc
     1741 ttcgttacgc ccacggaaca tcgccagagc gcggtgagaa ggcaccgtgg acaacggttc
     1801 gtgatgatcg aaatagtcgc ggaatttcgc cccttcctct tctttaccgc tcaccaccgt
     1861 agaaaccaaa tgcgcgttct tccacagata atcacgcact ttcgccagca gcgcggcatc
     1921 ttcggcaaac cgttccatca ggatatagcg cgcgccatcc agcgcggctt tggtatctgc
     1981 cacgccttta tcggcatcaa catattgtgc agcggcgact tctggcgtgt gtgacggatc
     2041 gctccacagc aggtcagcca acggctcaag ccctgcttca atggcgattt gcccgcgggt
     2101 gcggcgttta ggtttgtagg gcaggtagag gtcttcgagt tcggttttgc ttagggtggc
     2161 gttgatggcc ttcgccagat catcggtgag tttgccttgc tcggaaatgg acttgaggat
     2221 cgcctgacgt ctctcttcca gctcgcgcag atagctcaga cgcgtttcca gattacgcag
     2281 ctgcgtgtca tccagaccgc cggtgatttc cttacgataa cgtgtgataa acggcacggt
     2341 attcccttcg tcaagcaggc gaacggcagc gtcaacctgt tccgggcgcg cctgaatttc
     2401 acccgcaata atgcggcaga acgaatcatt catcatggtt tgagttcatc ttttcggatc
     2461 aaaaatcagg ggatagttat acggactggc tggcaaaaat gccagccatc ggcaggaggt
     2521 taagactctt ccttacggtt tcacgtactc gatagcatta acataccagc tcgcttcccc
     2581 ggcaggggta ttcaccaccg ccagatcgcc gacttctttt ttcagcaatg cgcgggccat
     2641 cggggaatcg atagagatgt aatctttacg gccaaaaatt tcatcgtagc cgacaatacg
     2701 gaaacggtga gtcacgccat cgtcgttttc aatctccacc cacgcgccaa aaaagacttt
     2761 gccttcctgc tgaggggagt aatcgacgat tttgagattt tccatgcatt tagtgagata
     2821 gcgcacgcga cggtcgattt cacgcagacg ctttttatta tactgatagt cagcattttc
     2881 gctgcggtcg cccagacttg cggcccaggt cacctttttt gtgacctccg ggcgttcttc
     2941 acgccagaga taattaagct cttgtttgag tttttcatac ccttcccggg taaccagggg
     3001 cgttttcatc tcgttgattc cctttgtctg tttgataatg cgcacattgg gtataacgtg
     3061 atcatatcaa cagaatcaat aatgtttcgc cgaataaatt gtatacttaa gctgctgttt
     3121 aatatgcttt gtaacaattt aggctgaaat tcataccaga tttagctggt gacgaacgtg
     3181 agctttttta agaatacacg cttacaaatt gttgcgaacc tttgggagta caaacaatgc
     3241 aagagaacta caagattctg gtggtcgatg acgacatgcg cctgcgtgcg ctgctggaac
     3301 gttatctcac cgaacaaggc ttccaggttc gaagcgtcgc taatgcagaa cagatggatc
     3361 gcctgctgac tcgtgaatct ttccatctta tggtactgga tttaatgtta cctggtgaag
     3421 atggcttgtc gatttgccga cgtcttcgta gtcagagcaa cccgatgccg atcattatgg
     3481 tgacggcgaa aggggaagaa gtggaccgta tcgtaggcct ggagattggc gctgacgact
     3541 acattccaaa accgtttaac ccgcgtgaac tgctggcccg tattcgtgcg gtgctgcgtc
     3601 gtcaggcgaa cgaactgcca ggcgcaccgt cacaggaaga ggcggtaatt gctttcggta
     3661 agttcaaact taacctcggt acgcgcgaaa tgttccgcga agatgagccg atgccgctca
     3721 ccagcggtga gtttgcggta ctgaaggcac tggtcagcca tccgcgtgag ccgctctccc
     3781 gcgataagct gatgaacctt gcccgtggtc gtgaatattc cgcaatggaa cgctccatcg
     3841 acgtgcagat ttcgcgtctg cgccgcatgg tagaagaaga tccagcgcat ccgcgttaca
     3901 ttcagaccgt ttggggcctg ggctacgtct ttgtaccgga cggctctaaa gcatgaggcg
     3961 attgcgcttc tcgccacgaa gttcatttgc ccgtacgtta ttgctcatcg tcaccttgct
     4021 gttcgccagc ctggtgacga cttatctggt ggtgctgaac ttcgcgattt tgccgagcct
     4081 ccagcagttt aataaagtcc tcgcgtacga agtgcgtatg ttgatgaccg acaaactgca
     4141 actggaggac ggcacgcagt tggttgtgcc tcccgctttc cgtcgggaga tctaccgtga
     4201 gctggggatc tctctctact ccaacgaggc tgccgaagag gcaggtctgc gttgggcgca
     4261 acactatgaa ttcttaagcc atcagatggc acagcaactg ggcggcccga cggaagtgcg
     4321 cgttgaggtc aacaaaagtt cgcctgtcgt ctggctgaaa acctggctgt cgcccaatat
     4381 ctgggtacgc gtgccgctga ccgaaattca tcagggcgat ttctctccgc tgttccgcta
     4441 tacgctggcg attatgctat tggcgatagg cggggcgtgg ctgtttattc gtatccagaa
     4501 ccgaccgttg gtcgatctcg aacatgctgc tttgcaggtc ggtaaaggga ttattccacc
     4561 gccgctgcgt gaatatggcg cgtccgaggt acgttcggtt acccgcgcct ttaaccatat
     4621 ggcggctggt gttaagcaac tggcggatga ccgcacgctg ctgatggcgg gggtaagtca
     4681 tgacttacgc acgccgctga cgcgtattcg cctggcgacc gagatgatga gcgaacagga
     4741 tggctacctg gccgaatcga tcaataaaga tatcgaagag tgcaacgcca tcattgagca
     4801 gtttatcgac tacctgcgca ccgggcagga gatgccgatg gaaatggcgg atctcaacgc
     4861 agtactcggt gaggttattg ctgccgaaag tggctatgag cgggaaattg aaaccgcgct
     4921 ttaccccggc agcattgaag tgaaaatgca cccgctgtcg atcaaacgcg cggtggcgaa
     4981 tatggtggtc aacgccgccc gttacggcaa tggctggatc aaagtcagca gcgggacgga
     5041 gccgaatcgc gcctggttcc aggtggaaga tgacggtccg ggaattgcgc cggaacaacg
     5101 taagcacctg ttccagccgt ttgtccgcgg cgacagtgca cgcaccatta gcggcacggg
     5161 attagggctg gcaattgtgc agcgtatcgt ggataaccat aacgggatgc tggagcttgg
     5221 caccagcgag cggggcgggc tttccattcg cgcctggctg ccagtgccgg taacgcgggc
     5281 gcagggcacg acaaaagaag ggtaaataaa cgggaggcga aggtgcctcc cgttttgctt
     5341 tctataagat actggataga tattctccag cttcaaatca ttacagtttc ggaccagccg
     5401 ctaccagcgc ggcacccgca ggggtgtcgg tgtatttatc gaagttgtcg ataaacagtt
     5461 tcgccagggt ttcggctttt tcctgccact gttccggaga agcgtaggtg ttacgcggat
     5521 cgagaatctt cgtgtctacg cccggcagtt cggttgggat cgccaggtta aacatcggca
     5581 gagtgaaggt ttctgcatta tccagcgaac cgttgaggat ggcgtcgata atggcgcggg
     5641 tatctttaat cgagatacgt ttgcctgtgc cgttccagcc agtgttaacc agataagcct
     5701 gcgcgcccgc cgcctgcata cgtttcacca gcacttctgc gtactgagtc gggtgcagcg
     5761 acaggaatgc cgcgccgaag caagcggaga aggttggcgt cggttcggtg atgccacgct
     5821 cagtaccggc cagtttggcg gtgaagccag agaggaagtg atactgggtt tgatcggcag
     5881 tcaggcgaga aaccggcggc aacacgccga aagcatcagc agtcaggaag ataaccttag
     5941 tcgcgtggcc cgctttggaa accggcttaa cgatgttatc gatgtgatag attggataag
     6001 aaacgcgggt gttctcggtt tttgaaccat catcaaagtc gatagtgcca tcttcacgca
     6061 cggtgacgtt ttccagcagc gcatcacgac ggatagcgtt gtagatttca ggttccgctt
     6121 ctttcgacag cttgatagtt tttgcgtagc agccgccttc gaaattaaac acgccgtcat
     6181 cgtcccagcc gtgttcgtca tcgccaatca ggcggcgttt cgggtcggtg gaaagggtgg
     6241 ttttaccggt gccggaaagg ccgaagaaca ccgcaacatc gcctttctcg ccaacgttgg
     6301 cggagcagtg catagaagcg atacctttca gcggcagcag gtagttcatc atcgagaaca
     6361 tccctttctt catttcgccg ccgtaccagg tgccgccaat cagctgcatg cgctcggtca
     6421 ggttaaacgc cacgaagttt tcggagttca gaccctgttc tttccactgc gggttagtgc
     6481 acttcgcgcc gttcataacg ataaagtctg gtttgaaacc tgccagctct tcatcgctcg
     6541 ggcgaataaa catgtttttg acaaaatgcg cctgccaggc cacttcggtg atgaaacgga
     6601 cggaaagacg agtatccggg ttcgcaccac agaaagcgtc gacaacgaac agacgtttgc
     6661 cggaaagctg cctggtcacc aggcctttca gatgctgcca ggtttccgga gagagaggtt
     6721 tgttgtcgtt cttacctttg cctttgtctg cccaccagaa agtatcgcga gtggtatcgt
     6781 cacggacgat atacttatct tttggtgaac gaccggtgaa gatcccggta tcgacggcaa
     6841 cggcacccag attagttaac accccgcgct cataacctgt caggctcgga tcgagctctt
     6901 cctgatacag caggtcgtag cttgggttgt aaacgatatc atgtacgtca ctgataccat
     6961 aagcctcgag ttcttgcggg gtcaaaccat tgttaacgcg catttcactg ctccttagcc
     7021 aatatgtatt gcctgaatag taaagtcttt ttgggggtgt taaccgcgac aaggctcata
     7081 gatttacgta tctggagaaa ttcatatttg acaaaaaacc ccgtgattcc tgttacgaaa
     7141 cggttgctat tatcgcagaa atagcatttt aggtgtggaa aatgttctca aaaggttaaa
     7201 tcttggttta tatggcggga atattgtgag tggaatcgca ttccttaatg aaattgatgc
     7261 aaattcaatc ggtaaagtat cgattcacca cgctaacttt ttttgattat tttctgaaaa
     7321 aagcaaaata ctactgcccg gatgcgataa ttaacccacc ttttgattct ggataaccaa
     7381 catggataac gttgaacttt caccggcaac acgctggggg atgattgcta ccggattact
     7441 tcaggggctg gtttgctacc tgttgatcgc ctggcttgcc ggaaaaaatc acagttggat
     7501 tgtttatggc gtgcctgcga ccgttgcgtt ttcatccgtt ttactcttct ccgtgatctc
     7561 ttttaaacag aagcgccttt ggggatggct ggcgctggtg tttattgcca cgacagggat
     7621 gagcggttgg ctgaagtggc aaactgatgg catgaacccc tggagagctg aaaaggcgat
     7681 ttgggatttt ggctgctatc tgctgttgat ggcaatgttg ttgctaccgt ggatacaaca
     7741 aagccttcgt atccgcaatt gcagtagccg ctatagctac ttttaccagt cagtatggca
     7801 taacgtactt atattactgg tgatttttct cgccaatggc ctgacgtggc tggtgctttt
     7861 actgtggggt gagttgttta aacttgttgg catcaagttt ttcaatacgc tcttttttgc
     7921 aaccgactgg tttatgtatc ttacattagg tctggttacc gcactggcgg tgattctcgc
     7981 gcgcacacag tcacgtttaa tcgactctat tcaaaagttg ttcacgttaa tcgccacggg
     8041 gttgctgccg ttagtatcat tgctaaccct gatgtttatc atcactctgc cgtttacggg
     8101 cctgagcgcg atttctcgcc acatctccgc cgccgggttg ctgttaacgc tggccttttt
     8161 gcaattgatc ttaatggcta ttgtccgcga tccgcaaaaa gcgtcacttc cctggacggg
     8221 gccgttgcgt tgcctgatta aaaccgcttt gctggttgct ccgctgtatg tgttcgtcgc
     8281 cgcctgggcg ttatggctgc gggtcgctca gtacggctgg actgtcgacc gcttgcaggg
     8341 cgcgctggcg gtgctggtgt tactggtgtg gtcgctgggg tattttgtca gtatcgtctg
     8401 gcgtaatggg caaaatcccc ttgttcttca gggcaaagtg aaccttgcgg tttcgttatt
     8461 ggtgttggtg atactggtgc ttcttaattc gccggtgctg gacagtatgc gtattagcgt
     8521 gaacagtcat atggcgcgtt atcagagcgg caaaaacacg ccagaccagg taactatcta
     8581 catgctcgaa cagagcggtc gctatggacg tgcggcgctt gagtcgctga aaagcgatgc
     8641 cgggtttatg aaagacccga aacgcgcgcg ggatctgctg atggcgttag atggagagca
     8701 acatcttcag gaacaggtat cggaaaaagt attagccgaa aatgtgttaa ttgcccctgg
     8761 ttctgttaaa ccggatgtga cattctggtc ggccttaatc caggatcgct ataacgtgat
     8821 gacctgtatt gaaaaagacg cctgcgtcct ggtcgagcaa gatctgaata gtgatggtca
     8881 ggcggagcgg atcctgtttg cttttaatga tgacagagtc attgtctatg gctttgactc
     8941 agacagaaaa gaatgggacg cgcttgatat gagtttactt ccgaacgaaa taacgaaaga
     9001 aaaattactc acagctgcga aggatggaaa actggggacg aggccgaaag cgtggcgcga
     9061 tctgacggta gatggtgaaa cgctggaaat aaacttaagt aagtgacaac gcttttatcg
     9121 gatacgacgc tgtatctgac caaaataatt tgcgatttat ttcataggcg ctggtaagcg
     9181 cagcacatca ggccattaag ttgtaaaatc cggcagagcc ctctctgccg gacatactca
     9241 ttaatgaact tgcggatctg ccggagacgc gttgttgcgg atttcagcaa tatccatcgc
     9301 attgaacaga tagtggttac cgcagtaatc acaatgcatg tcaatttcgc catcttccgc
     9361 caggatgcta tcaacttctt catcaggcag cgttttcagc gcatcggcgc aatgttcacg
     9421 cgagcaggtg catttgaact ccacatcctg cggatcgtaa accgtcacct cttcttcgtg
     9481 atacaaacgc cacaacactt cgtttgccgg taaggtcagc agttcttcgg ttttgatggt
     9541 ttcggttagc gtcgccaggt ggtcaaagtc gtcctgctgg gcattttgcg caggcattac
     9601 ctgcaacaac ataccgcctg cagccggttt gccgtctacg tcgccggtgc gaataaacag
     9661 gcgcgtcggc agctgttcag aacgcataaa gtaatcttcc aggcaggccg ccagggtatc
     9721 accttccaga ccaactacgc cctgatagcg ttcgccttcg ctcggggtaa tggtgatcac
     9781 cacgtaacca ttgccgacca gcgttttcag gtcggcattt tctggaattt cgccctgcac
     9841 gcgcgccaca ccgcgcattt gctggttatt gttaccgtta ataaccgcca gattcatcgg
     9901 accgtcgccc tgcagctgta cggtgatatc accatcaaac ttcagcgtag cggttaacag
     9961 gctggtcgca accagcagtt ctgccagcac gtttttaacg ggctgcggat aatcgtggtt
    10021 ctcaaggatc tgttgcaggg tttccgaaac ggttaccagt tcgccgcgaa cggcaaaatt
    10081 ttcaaacaga tagcgatgta attggtcatg ttgcggcata atcatctctc ttgcaggtga
    10141 cagttattca ctgtcgccgt gtttaaatcg taacaggtcg cggcgctctt ttttgtccgg
    10201 gcgtcggtcc gggtgcggca tggttaaggc attaagttta cgtgccatcg ccattttttc
    10261 gcgtttctct acactttccg cagtctcttc atacagcaag gctgcctcgc tggcggggcg
    10321 acgctgttca gtaatcgcct ttacaatcac cgtgcgttcg tcatttccct ggcgcagagt
    10381 gagcgtggca ttcagctcga cgattttgct cggcttgctg cgctgcccgt tgtaatgcac
    10441 cttaccgcct tcaatcattt cacgggccag cgcgcgggtt ttataaaaac gggcagccca
    10501 tagccattta tccagtcgaa cctcaacagc aggtttctct ttcatggcgt ctccttcaca
    10561 ttagcgaggg gatcaggcgg cggtagtcat tcagtgacgg atggcgttga tactgtttct
    10621 cggcaatccc ggaatcagga ttagtcacgc cgaggcagta acgaatacca aattgcgcgg
    10681 cagcatcgag aatcgcttcg ctgtcatcaa taaacagcgt tctttcagct ttcagacccg
    10741 tagcttcggc caccgcatgc cataaccgct gatcctcttt cggataacca aatgtgtggg
    10801 tggaaagtaa taaatcaagg tgtgcgtcca gacccgtatg ctcaagtttt accgccaggt
    10861 tgtgcggatg agcattggtg agcaaaattc gctgcttacc gctggctttc agtgcctcaa
    10921 gaaacggaat ggtatcttca cgcagtacgg cgcgcggtcc catctcggtg gtcattgcac
    10981 agatatccag acccagttgc tcactccagt aatcaagaca gtaccagttt agcgtatgct
    11041 gtacgtcgtg atattgctgg cgcatatatt ccatcgcttc ctgtggcgta accccgtttt
    11101 tcgcgcccca tgtttcaggc accagctttt gccagaaata gttatcgaag gcgaggtcga
    11161 gcaacgtgcc gtccatatcc agcagaacgg tatctacgtc ctgccaggca atgttgatat
    11221 gcatgaggga aatctccaga gtgaagcaat ttgcgcgaca gggtagcata acctgtcgcg
    11281 caaacgtgtt attcgataag gctttctgaa ggggtgatca gttgcgggtt caggcagctt
    11341 tcataatagg cctgaatctc catcatgcga gtgcgatgac gctggtaacg acgccaggcc
    11401 tgtacgccat tgtaaatggc gctacccagc atcgtcagta gcagcaatgt ggtgctgaga
    11461 tagcgccaca ggccggaacg atccgggatc ggatgaaggc caatatgctg cgtaccattg
    11521 gcgtcagtga agatttttgt gacgatacct tcggcgttaa acggcgtatg catcagcatt
    11581 tgtgccagtt tctggaaagc gttccactgt tcttgcggcg ggtagtcgta aagtgatgcc
    11641 gaaggccagg gctgatcaac aaaatcgctg ccttcgtcgc tgacaatcag gaatccgccg
    11701 ggggccggac tgtttagtga ttgtgccgct cgcgccgttt catgcgtgat aaacggcgcg
    11761 gtggaggttg ccaccaggtt atccagcgat tccgcactca ccgggcgtaa taacacattc
    11821 acgccatcga gcttcccggc gttggcgcgt tttaccagcg cgtcccagtc tttactgttg
    11881 ccgagattga ccagcgcatt tttcagtcgc acacagtcat ctttggcaga acataaatcc
    11941 gctgtcttca gtacaatgtc gccaaaatca tcaagcaata ccatgccgga tttttgaatc
    12001 gctgaacgta atgaggcact gacgcgagat tcatcttccg gtttagggtg cagctggcga
    12061 ttaactgctt cagtcaatgc cgtcgctttg ttgaccagtt cagattctgg taatggtaat
    12121 gagcgggcgt cattccagat gatctgcgag cagtcaaacg gtaaaaaagg tgaattggtt
    12181 ttcgcgctcc aggttccgga agtgcgaata ttacacattc ccgtaccgct aatacgcaat
    12241 gtatcgccta cccgcacgcc agcgtcagcc agttgtttta cgctggtggc ttcaatggtc
    12301 tgcgcgcctt tcatccatga gagagtgaat ttcagcggca tatccagcgg gatccagaat
    12361 aacagcataa acagcaccag cagcgagccc gcagcgataa tcgtactgcg cagccagtgc
    12421 tgtaacggaa agttttttac ttcatcatgc agcgaaagat atcgcccctg acgcactacg
    12481 tggcagtcga gatagatatc aatatcggtt tgttgatcga gatcctgagc aatgtatggc
    12541 tgccagtgtg cgggatagac caggtcgata ataccgagtg aaatattgtt gatctgttcc
    12601 tgatcgtttt cgccaaacaa tccccaacga cggggtgtac cgcgcagaca atgaatttcc
    12661 cgcagggagg attttgccgg gggcgcgaat agcccccaca gacctgcgcc cagcagcagt
    12721 aatgcgccgc ctgccagcca cggaacaaat acatccgggg taatcaggca gaaaaagaac
    12781 atcaggaagg aggcgacgat cagcaacgct tcacgcagcc cgcgcggacg actcagcgca
    12841 tattcttcat gcgtttcttt gcgaatattg agtagctcga tttgctcact ctcttccccg
    12901 cgaatcgacg cctgcgtgga cggaacaggt tgcaaggcat agccgcgcgt ttcctgcatg
    12961 tactcctgta gcgtatgacc gttgagtgaa ataaccaacg gcagcgaatc ggtatgaatc
    13021 agttcaacgg tattctcatc gttgatgtac tgttcccaga aggggggcag gtggacttct
    13081 accgaatcga ggtagtaacg ccatttattc ggatcgtcgg tagagatgcc gtaacgtgtg
    13141 atagcgtgtg tcagcatcat gacgttgttg ctttcggcat tcagcgccag agagatcggt
    13201 gccgcgctag ctcccgttgg gccaggcacc tgtaatacct gcgtcaggct ctcaagataa
    13261 ttttcaacgg cgctacgttc ttcaggtgtg agtttacgcg tttgcgcatc cgcgaaggcg
    13321 ttggtccagg gcagctgact ccgtctggat cgcactttta tcagccatcc cgcaagtagt
    13381 gagcaggcca gcaaagcagc taaaaaaatc acaatggtgc tcatgctttc cccatcttac
    13441 ttagtctgtc aggcgtggtc agtcgcacca gacacaatac atgattctgc ggttggctat
    13501 cggcaagcgt ggagtttaac ttgagcatca ttaagcacat cacagtaacc gctgatcata
    13561 gcaaaccctc tgaaggcgga atatcagcaa attcctagag ttatttcaac ctattgactt
    13621 ttaatttgat ttgaggacga ttatttatta agttacataa atgtaaataa catgcaattc
    13681 acattgccga aagcgtgtcc gatatcgcac aataaccgct gatttcacag catagatccc
    13741 acgatgagca aatcattaca aaaacccacc attctgaatg ttgaaactgt agcccgttcc
    13801 cgactgttta ccgtcgagag cgtggatctg gagttcagca atggcgtgcg gcgtgtttat
    13861 gaacgaatgc gtccaaccaa ccgggaagca gtgatgattg tgccgattgt ggacgatcac
    13921 ctgatcctga tccgcgaata cgcagtggga actgaatcct acgaattagg tttttcgaaa
    13981 ggattaattg atccgggtga aagcgtctac gaagccgcta accgcgagct aaaagaagag
    14041 gttggatttg gtgcgaacga tctgactttt ttgaagaagc tcagcatggc accgtcttac
    14101 ttttccagca aaatgaatat cgtggtcgcg caagatctct acccggaatc gctggaaggc
    14161 gatgagccag agccgctacc acaggtgcgc tggccgctgg cgcatatgat ggatttgctg
    14221 gaagaccctg acttcaacga agcgcgtaat gtcagcgcgc tgttcctcgt gcgcgaatgg
    14281 ttgaaagggc aggggcgagt gtaaatgcgt gaagtttgcc tgatgcacaa cgcttatcag
    14341 gcttatgggg ttcctgcaat atattgattt ttcacgattt tgttagccgg gtaacgcggt
    14401 cacccgcatc cagcataaac aaatgcactt tgtcagccaa ctgaaaaggc gccgaagcgc
    14461 ctttttaatc agaacaattc ctgtgcctca ccattatcga taatggtcgt tcccacctcg
    14521 tgcaccgcct gttgtgtcgg ctgcgtacct tcgatgaaat actcttcgcg gctgttgcca
    14581 ccattagcta actgcccggt gctgcgatcg atattcaccg tcacaatacc cggtggcggc
    14641 gtcagcggct gctccggcac accttcaaga acggctttca tataagcgtc ccatgcaggc
    14701 tgggcactct tggctccgcc ttcgtaacct gagatctgat ctttaatcgc tccggaagcc
    14761 gttgtatgac cgagattacg acggtgatca tcaaagccaa tccagaccga ggtcacaacg
    14821 cccggaccgt aacccgagaa ccacgcatct ttcgaactgt tagtggtacc ggttttcccg
    14881 ccgatatcgc gacgctgcaa atcacgacct gcacgccagc cagtaccctg ccagcctggc
    14941 tcaccaaaga tattggtgtt caaagcactc ttaatcagga atgccagcgg agtgttgatg
    15001 acgtgcggtg cgtactcctg cgcgccagtc ttcgccacta acgcctgatt tgcctgctcc
    15061 agctgcggca ttggtacaga aacattctgc tgctcgcggg agatagcgac atcttcaaca
    15121 tcgttatttt ccagcacgtt cgatttctgc gtatcaccgt aaatcaccgg aatatcgcat
    15181 tccgggcagg ctactttcgg tttcgcttcg aaaatcacgc cgccctgatc gttttcaatt
    15241 ttgctgataa accacgggtc caccaggaag ccgccgttcg ccatgaccgc gtagccgcgc
    15301 gccacctgca ttggggtgaa ggacgctgaa cccagcgcca gcgattcggt gtggacaatg
    15361 ttttgcgccg ggaagccgaa gcgttgcaga tattctgcag cgtagtcgac gcccatagcc
    15421 cgcattgcac gtaccatcac cacgtttttc gactgaccca gcccctgacg taagcgaatt
    15481 ggaccagcat attgtggcgg cgagtttttc ggctgccagt cagaaccggc acctgcgtcc
    15541 cagcgagaaa ttggcacatc gttcaacata cttgccagcg tcagaccttt atccatcgcc
    15601 gcggtgtaga ggaacggttt gatgttggaa cccacctgac gcagtgcctg ggtggcgcgg
    15661 ttaaacttgc tctgattgaa atcaaagcca ccgaccagcg ccataacggc accgttttgc
    15721 ggattgatcg acaccagcgc cgagttcact tccggcactt gtgccagcca ccatgcatcg
    15781 ccaacctgac gaacccagat ttgctgaccc gtttgcagaa catcggtcac tttacgcggc
    15841 gtcggtccct gctgagtatc cgaacggtaa ggacgcgccc agcgaacgcc ttccatactc
    15901 aatgcgacgg tcgacccgtc cgccagcatc gccgtcgctc cctgaggatt ggcgctggtg
    15961 actgcggcag gcagcagcgg accataggtc ggcagcgcct tcagcgtatc ggtaatcttg
    16021 ttgttatccc acgccgactc gcccactttc cacagcacat ttgccgggcc gcgatagccg
    16081 tggcgcatgt cgtagtccag cacgttatta cgtaccgcct gctgtgcggc ctgctgcact
    16141 ttgcgggtga tggtggtgta aatgcgataa ccgtcttcat aggcactttc gccataacgg
    16201 ttatacatct cctggcgcac catttcgttc aggtacggcg cagagaaagc aatctccggc
    16261 gcgtgatagt tagcgttaat cgcctcagtg cgtgtctgat cgaactgttg ttgggtgata
    16321 tacccttcat ccagcatccg cgacagtacg acgttacgcc gcgcgacggc acgatccatt
    16381 gagtagagcg gattaaaggt ggaaggcgct ttcggcagcc cggctatcac agccatttcg
    16441 ttcagcgtca gttggtcgac cgttttaccg aaatagactt gtgccgcagc accgacacca
    16501 taggcgcggt aaccgaggta aatcttattc agataaagct cgaggatctc gtctttcgtc
    16561 agcaactgtt caatgcgaat cgcgaggaag acttccttaa tcttacgcat cagcgtgcgt
    16621 tctggactga ggaagaagtt tctcgccagc tgctgggtaa tggtactcgc cccttgtgac
    16681 gcgtggccgg agaacagcgc cacacttgcc gcacggaaga tccccaccgg gtcaacgccg
    16741 tgatgctcgt agaagcggct gtcttccgtc gcgataaagg ctttcaccat ctccggcggg
    16801 atttgatcca acgtaaccgg aatacgacgt ttctcaccgt attgagcaat cagctcgcca
    16861 tcggcgctgt aaatctgcat cggaatttgc aggcgaacat cttttaatgt cgccacatcc
    16921 ggcagttgtg gctcgatgta gcggtatagg ccataaatcg agcctgctcc cagcagaatg
    16981 caacagactg caaggatcaa aaaatacttt acgaacttca ctggaaattt cccatttagt
    17041 ttcatttggg cagtttataa acaaacgcgc ggtagtataa aggcaagcca gacgcattga
    17101 tatacccgtc agagtgacgg gtgataagga gatcatcaca atggcattta agatctggca
    17161 aattggtttg catttacaac agcaagaagc ggtagcggtt gcgatcgtgc ggggcgcaaa
    17221 agaatgcttt ttgcaacgct ggtggcggtt gccgctggag aacgacatta tcaaagatgg
    17281 gcggattgtt gatgcgcagc agctggctaa aacgttgtta ccttggagtc gcgaactgcc
    17341 gcagcgtcat cacattatgt tggcgtttcc cgccagtcgc acattacagc ggtcatttcc
    17401 gcgcccgtcg atgtcccttg gtgagcggga gcaaacggcc tggctgtcag ggacgatggc
    17461 ccgcgagctg gatatggatc cggactccct gcgcttcgat tacagcgaag actcactcag
    17521 tcccgcctat aacgtgactg ccgcgcaaag caaagagctg gcaacgctgc ttactctggc
    17581 agaaaggttg cgtgttcatg ttagtgcgat caccccggat gccagtgcat tacagcgatt
    17641 cctgcctttt ttaccttctc atcagcaatg tctggcctgg cgtgataacg aacagtggct
    17701 gtgggcgacg cgctatagct gggggcgcaa actggcggtg gggatgacta gcgcgaagga
    17761 gctggcggca gcgttattcg ttgatcccga cagcgtcgcg atatgtggcg aaggcggatt
    17821 tgacccctgg gaggccgttt ctgttcgtca gccgctgcta ccgccgcctg gtggagactt
    17881 tgccatcgcg ctggggctgg cgcttgggaa ggcgtactga tgaacccgcc aattaatttt
    17941 ttgccctggc gacagcaacg ccggaccgct tttctgtgtt tctggttgct gatgttcgtt
    18001 gcgcctctgc tgctggccgt cgggataacg ctaatactgc gtctgacagg cagcgccgaa
    18061 gcgcgcatag acgcagtttt gcttcaggcg gaacaacaac tcgcccgcag cttacagata
    18121 acgaagccac gtttgctgga gcaacagcag ttacgcaaac agcgttcgca acggcagcgc
    18181 cagcgacaat ttacccgcga ctggcaatct gcgctggaag cactggcggc gcttttaccc
    18241 gagcacgcct ggctgacaac gataagctgg cagcagggaa cgctggagat caaggggctg
    18301 acaacaagca ttaccgcgtt aaacgcacta gaaacgtcac tccgccagga tgcgtctttt
    18361 catctcaatc agcggggagc cacgcagcag gatgcgcagg gacgctggca atttgagtat
    18421 cagttaacaa ggaaggttag cgatgaacat gttctttgac tggtggttcg ccacatcacc
    18481 ccgcctccgc cagttttgct gggcattctg gttgctgatg ttagttacgc tcatttttct
    18541 gtcatcgaca caccatgaag agcgcgacgc attaattcga ttacgggcaa gtcatcacca
    18601 gcagtgggcc acactgtatc gcctggttga caccactccc ttcagcgaag aaaaaacgct
    18661 gcccttttcg ccactggatt ttcagttgcc cggcgcgcaa ctggtttcct ggcatccatc
    18721 cgcgcaggga ggtgagttgg cgttgaaaac gctgtgggaa gcagtgccgt cggcattcac
    18781 acggctggca gagcgcaacg tcagcgtgag ccgtttttcg ttaagcgtgg aaggtgatga
    18841 tcttttgttc acgctacaac tggagacgcc gcatgagggt taaacgctgg ttgttggcag
    18901 gtattgcatt gtgcctttta accggtatgc gtgacccttt taaaccgccg gaagatctat
    18961 gccggattag cgaacttagc cagtggcgct atcaggggat ggtagggcga ggcgagcgca
    19021 tcatcggtgt aataaaagac gggcaaaaga aatggcgacg ggtgcagcaa aacgatgtgc
    19081 tggaaaacgg ctggacaatt ttacagctga cgccagacgt actaacgctg ggtaccggga
    19141 caaactgcga accgccacaa tggttgtggc aacggcaagg agatacaaat gaagcaatgg
    19201 atagccgcac tactgttgat gctgataccc ggcgtacagg cggcaaagcc gcaaaaagtg
    19261 acgctgatgg tggatgacgt tccggtagct caggtgttgc aggcgctggc tgaacaggag
    19321 aagttgaacc tggtcgtgtc gccagacgtc agcggtacgg tgtcgttaca tctaacagat
    19381 gttccctgga agcaggcact acaaactgta gtgaaaagcg ctggactgat aacgcggcag
    19441 gaaggcaaca ttctctcagt gcattccatt gcctggcaga ataacaatat cgcccgccag
    19501 gaggcggagc aggcgcgggc gcaggcaaat ctgccgctgg aaaatcgcag tataaccctg
    19561 caatacgccg acgcgggaga actggcgaaa gcgggggaga agctactgag tgccaaaggg
    19621 agtatgaccg tcgataaacg caccaatcgc cttttgctac gagataacaa aacggcgtta
    19681 agcgcgcttg aacagtgggt agcgcaaatg gatctgccgg tcgggcaggt tgagctgtcg
    19741 gcgcatattg tcaccattaa tgaaaaaagt ttgcgtgagt taggcgtgaa atggacgctg
    19801 gccgatgcgc aacacgctgg tggcgttggg caagtcacca cgcttggtag cgacctctcc
    19861 gtagcgacgg cgacaacgca tgtcggtttt aacattgggc gcatcaacgg acgcttgctg
    19921 gatcttgagc tttccgcgct cgaacaaaaa cagcagctgg atattatcgc cagtccgcgt
    19981 ctgctggcct cacatcttca gcctgccagc attaaacagg ggagcgaaat tccatatcag
    20041 gtttccagcg gggaaagtgg cgcgacgtcg gtggaattta aagaggccgt cctggggata
    20101 gaggtcacgc ccacggtgtt acaaaaaggt cgcatccggc tgaaattaca catcagccag
    20161 aacgttccgg ggcaggtgct acagcaggcc gatggcgaag tgctggcgat tgataagcag
    20221 gagatcgaaa cgcaggtcga ggtcaaaagc ggagaaacgt tggcgctggg cggcattttt
    20281 acccgtaaaa ataaatcggg tcaggatagc gtaccgttgc ttggcgacat tccctggttc
    20341 gggcaattat ttcgtcatga cggaaaagaa tatgaacgac gcgagttagt ggtgtttatc
    20401 acgccacgac tggtttccag tgagtaaaca gccgtaaaag cggtaatgtt tttatgctga
    20461 acgtgtttca tctatttgac gcgcgcaggt atttagcata caaggagtac cgatttgaga
    20521 gttggcgctc ttcgctgcct gcgttccatg atgatgattt atcattcagg cggcattttg
    20581 ctgtcttttt tacgctaatc ttacccggtg atttatcgcc agagcggtgg tagcaaggca
    20641 gcgcgcttgc agcgaccaga tatgcagagg gatgggtgat ttattcagtt gccaaacccg
    20701 ctggagtatt gagataattt tcagtctgac tctcgcaata tcttatgagg tttcagttca
    20761 tgtcctgcgg cgctctctga gcgaagcggg tttatcatta acgaatagtc ttagtagtac
    20821 cgaaaaaatg gcagagaaac gcaatatctt tctggttggg cctatgggtg ccggaaaaag
    20881 cactattggg cgccagttag ctcaacaact caatatggaa ttttacgatt ccgatcaaga
    20941 gattgagaaa cgaaccggag ctgatgtggg ctgggttttc gatttagaag gcgaagaagg
    21001 cttccgcgat cgcgaagaaa aggtcatcaa tgagttgacc gagaaacagg gtattgtgct
    21061 ggctactggc ggcggctctg tgaaatcccg tgaaacgcgt aaccgtcttt ccgctcgtgg
    21121 cgttgtcgtt tatcttgaaa cgaccatcga aaagcaactt gcacgcacgc agcgtgataa
    21181 aaaacgcccg ttgctgcacg ttgaaacacc gccgcgtgaa gttctggaag cgttggccaa
    21241 tgaacgcaat ccgctgtatg aagagattgc cgacgtgacc attcgtactg atgatcaaag
    21301 cgctaaagtg gttgcaaacc agattattca catgctggaa agcaactaat tctggcttta
    21361 tatacactcg tctgcgggta cagtaattaa ggtggatgtc gcgttatgga gaggattgtc
    21421 gttactctcg gggaacgtag ttacccaatt accatcgcat ctggtttgtt taatgaacca
    21481 gcttcattct taccgctgaa atcgggcgag caggtcatgt tggtcaccaa cgaaaccctg
    21541 gctcctctgt atctcgataa ggtccgcggc gtacttgaac aggcgggtgt taacgtcgat
    21601 agcgttatcc tccctgacgg cgagcagtat aaaagcctgg ctgtactcga taccgtcttt
    21661 acggcgttgt tacaaaagcc gcatggtcgc gatactacgc tggtggcgct tggcggcggc
    21721 gtagtgggcg atctgaccgg cttcgcggcg gcgagttatc agcgcggtgt tcgtttcatt
    21781 caagtcccga cgacgttact gtcgcaggtc gattcctccg ttggcggcaa aactgcggtc
    21841 aaccatcccc tcggtaaaaa catgattggc gcgttctacc agcctgcttc agtggtggtg
    21901 gatctcgact gtctgaaaac gcttcccccg cgtgagttag cgtcggggct ggcagaagtc
    21961 atcaaatacg gcattattct tgacggtgcg ttttttaact ggctggaaga gaatctggat
    22021 gcgttgttga gtctggacgg tccggcaatg gcgtactgta ttcgccgttg ttgtgaactg
    22081 aaggcagaag ttgtcgccgc cgacgagcgc gaaaccgggt tacgtgcttt actgaatctg
    22141 ggacacacct ttggtcatgc cattgaagct gaaatggggt atggcaattg gttacatggt
    22201 gaagcggtcg ctgcgggtat ggtgatggcg gcgcggacgt cggaacgtct cgggcagttt
    22261 agttctgccg aaacgcagcg tattataacc ctgctcaagc gggctgggtt accggtcaat
    22321 gggccgcgcg aaatgtccgc gcaggcgtat ttaccgcata tgctgcgtga caagaaagtc
    22381 cttgcgggag agatacgctt aattcttccg ttggcaattg gtaagagtga agttcgcagc
    22441 ggcgtttcgc acgagcttgt tcttaacgcc attgccgatt gtcaatcagc gtaacaacaa
    22501 gaaaggtcag gccgcttatc aagcggtcta ttagcttcag gttaattgca acgtggtaag
    22561 cattaacctt ttagtggggt gttaaatgga tgaattcaaa ccagaagacg agctgaaacc
    22621 cgatcccagc gatcgtcgta ctggtcgttc tcgtcaatct tctgaacgtt ctgagcgtac
    22681 tgaacgtggc gaaccgcaga tcaattttga tgatattgaa cttgatgaca ctgacgatcg
    22741 ccgtccgact cgtgcgcaaa aagagcgcaa tgaggaaccg gaaatcgaag aagaaattga
    22801 cgaatccgaa gatgaaaccg tggatgaaga gcgcgtagag cgtcgtccgc gtaagcgcaa
    22861 aaaagcagcc agtaaacccg cttctcgtca gtatatgatg atgggcgtcg gcattctggt
    22921 tctactgctg ttgatcatcg gtatcggttc tgcgctaaaa gccccctcga cctcttccag
    22981 cgatcaaacc gcgtctggcg ataagagtat tgatcttgca ggcaatgcga ccgatcaggc
    23041 gaatggggtg cagccagcgc cgggaaccac gtctgcggaa aatactcagc aggatgtttc
    23101 tctgccaccg atctcttcta cgccgactca agggcaaacc ccggcggcaa cggatggtca
    23161 acaacgtgtt gaagtgcagg gtgacctgaa caatgcgctg actcagccac aaaatcagca
    23221 acagttgaac aatgtggcgg tcaattccac attgccgacc gaacccgcga ctgtcgcgcc
    23281 tgttcgcaat ggcaatgcat cgcgtgacac ggcgaaaacg caaaccgctg aacgtccgtc
    23341 cactacgcgc ccagctcgtc agcaggcggt gattgaaccg aaaaaaccgc aagcaaccgt
    23401 gaaaacggag ccgaagccgg tagcacagac gccgaagcgt actgaaccag ctgcccctgt
    23461 ggcgagcacg aaggcaccgg ctgcgacttc tacgccagca ccaaaagaga cggcgactac
    23521 ggctccagta cagacggcat ccccggcgca aaccacggca acaccagccg ctggagggaa
    23581 gaccgcaggt aatgttggtt cgttgaaatc ggcaccgtcc agccattaca ctctgcagct
    23641 gagcagttcc tctaactacg acaacctgaa cggttgggcg aagaaagaga atctgaaaaa
    23701 ctacgttgtc tatgaaacga cgcgtaatgg tcagccgtgg tatgtcctgg tttctggcgt
    23761 gtacgcttcg aaagaagagg cgaaaaaagc ggtatctaca ttgccagcag atgttcaggc
    23821 caaaaacccg tgggcgaaac cgctgcgtca ggtacaggcc gatctgaagt aatcaaggtt
    23881 atctcccgca atggtttatc gttgcgggag ctgcctgaag cgctggatgc tgtcggagct
    23941 ttctccacag ccggagaagg tgtaattagt tagtcagcat gaagaaaaat cgcgcttttt
    24001 tgaagtgggc agggggcaag tatcccctgc ttgatgatat taaacggcat ttgcccaagg
    24061 gcgaatgtct ggttgagcct tttgtaggtg ccgggtcggt gtttctcaac accgactttt
    24121 ctcgttatat ccttgccgat atcaatagcg acctgatcag tctctataac attgtgaaga
    24181 tgcgtactga tgagtacgta caggccgcac gcgagctgtt tgttcccgaa acaaattgcg
    24241 ccgaggttta ctatcagttc cgcgaagagt tcaacaaaag ccaggatccg ttccgtcggg
    24301 cggtactgtt tttatatttg aaccgctacg gttacaacgg cctgtgtcgt tacaatctgc
    24361 gcggtgagtt taacgtgccg tttggccgct acaaaaaacc ctatttcccg gaagcagagt
    24421 tgtatcactt cgctgaaaaa gcgcagaatg cctttttcta ttgtgagtct tacgccgata
    24481 gcatggcgcg cgcagatgat gcatccgtcg tctattgcga tccgccttat gcaccgctgt
    24541 ctgcgaccgc caactttacg gcgtatcaca caaacagttt tacgcttgaa caacaagcgc
    24601 atctggcgga gatcgccgaa ggtctggttg agcgccatat tccagtgctg atctccaatc
    24661 acgatacgat gttaacgcgt gagtggtatc agcgcgcaaa attgcatgtc gtcaaagttc
    24721 gacgcagtat aagcagcaac ggcggcacac gtaaaaaggt ggacgaactg ctggctttgt
    24781 acaaaccagg agtcgtttca cccgcgaaaa aataattctc aaggagaagc ggatgaaaca
    24841 gtatttgatt gccccctcaa ttctgtcggc tgattttgcc cgcctgggtg aagataccgc
    24901 aaaagccctg gcagctggcg ctgatgtcgt gcattttgac gtcatggata accactatgt
    24961 tcccaatctg acgattgggc caatggtgct gaaatccttg cgtaactatg gcattaccgc
    25021 ccctatcgat gtacatctga tggtgaaacc cgtcgatcgc attgtgcctg atttcgctgc
    25081 cgctggtgcc agcatcatta cctttcatcc agaagcctcc gagcatgttg accgcacgct
    25141 gcaactgatt aaagaaaatg gctgtaaagc gggtctggta tttaacccgg cgacacctct
    25201 gagctatctg gattacgtga tggataagct ggatgtgatc ctgctgatgt ctgttaaccc
    25261 aggttttggc ggtcagtcgt tcattccaca aacactggat aaactgcgcg aagtacgtcg
    25321 tcgtatcgac gagtctggtt ttgacattcg actggaagtg gacggtggcg tgaaggtgaa
    25381 caacattggc gaaatcgctg cggcgggcgc ggatatgttc gtcgccggtt cggcaatctt
    25441 cgaccagcca gactacaaaa aagtcattga tgaaatgcgc agtgaactgg caaaggtaag
    25501 tcatgaataa gtttgaagat attcgcggcg tcgcttttga tctcgacggt acgctggttg
    25561 acagtgctcc cggtcttgct gctgcggtag atatggcgct gtatgcgctg gagttacccg
    25621 tcgcaggtga agaacgcgtt attacctgga ttggtaacgg cgcagatgtt ctgatggagc
    25681 gtgcattggc ctgggcgcgt caggaacgtg cgactctgcg taaaacaatg ggtaaaccgc
    25741 ccgttgatga cgacattccg gcagaagaac aggtacgtat tctgcgtaaa ctgttcgatc
    25801 gctactatag cgaggttgcc gaagagggga cgtttttgtt cccgcacgtt gccgatacgt
    25861 tgggcgcgtt gcaggctaaa ggcctgccgc taggcctggt caccaacaaa ccgacgccgt
    25921 tcgtcgcgcc actgctcgaa gccttagata ttgccaaata ctttagcgtg gttatcggcg
    25981 gcgatgatgt gcaaaacaaa aaaccgcatc cggacccgct gttactggtg gctgagcgga
    26041 tgggaattgc cccacaacag atgctgtttg tcggcgactc acgcaatgat attcaggcgg
    26101 caaaagcggc aggttgccca tcagttggct taacctacgg atataactac ggcgaggcta
    26161 tcgatctcag ccagcctgat gtaatttatc agtctataaa tgaccttctg cccgcattag
    26221 ggcttccgca tagcgaaaat caggaatcga aaaatgacta agcccatcgt ttttagtggc
    26281 gcacagccct caggtgaatt gaccattggt aactacatgg gtgcgctgcg tcagtgggta
    26341 aacatgcagg atgactacca ttgcatttac tgtatcgttg accaacacgc gatcaccgtg
    26401 cgccaggatg cacagaagct gcgtaaagcg acgctggata cgctggcctt gtatctggct
    26461 tgtggtatcg atcctgagaa aagcaccatt tttgttcagt cccacgtacc agaacatgcg
    26521 cagttaggct gggcactgaa ctgctatacc tacttcggcg aactgagccg catgacccag
    26581 tttaaagata aatctgcgcg ttatgccgag aacatcaacg ctggtctgtt tgactatccg
    26641 gtgctgatgg ctgcggacat cctgctgtat caaactaatc tggtaccggt gggtgaagac
    26701 cagaaacagc acctggaact gagtcgcgat atcgcccagc gtttcaacgc gctgtatggc
    26761 gagatcttta aggtgccgga gccgtttatt ccgaaatctg gcgcgcgcgt aatgtcgctg
    26821 ctggagccga ccaagaagat gtccaagtct gacgataacc gcaataacgt tatcggcctg
    26881 ctggaagatc cgaaatcggt agtgaagaaa atcaaacgcg cggtcactga ctccgacgag
    26941 ccgccggtag ttcgctacga tgtgcagaac aaagcgggcg tttccaacct gctggatatc
    27001 ctttctgcgg taacgggcca gagcatccca gaactggaaa aacagttcga aggcaagatg
    27061 tatggccatc tgaaaggtga agtggctgat gccgtttccg gtatgctgac tgaattgcag
    27121 gaacgctatc accgtttccg caacgatgaa gccttcctgc aacaggtgat gaaagacggc
    27181 gcagaaaaag ccagtgtaca cgcttcccgt acgctgaaag cggtgtacga agcgattggt
    27241 tttgtggcga agccgtaata tcaaaacgct cggacggtcc cctcgcccct ttggggagag
    27301 ggttagggtg aggggagcag gcaagcgcca gtgggaatta ccctttgctc gcattgtcga
    27361 ataaatcact tcgtcatcac tctgaaaccg gggaaacccg gtttttttat cctcatttgc
    27421 aataatccga aaaaatgtga agcgcctcgc cgtttccaca tctcacagtt gccacttatc
    27481 ttcattttaa tgaagatata aacattcatt ttattgaaaa tatattatgc gtcgaacgtt
    27541 tatcaaaaaa gaaggcgtcg tcatcacgac gctggcccgt tatttgttgg gtgaaaaatg
    27601 cggtaatcga ctgaaaacca tagatgagct ggcaactgaa tgccgttcat cggttggcct
    27661 gacgcaggcc gcgttgaaaa cgttggaatc aagtggagcg atacggattg aacgccgtgg
    27721 gcgcaatggc agttatctgg tcgaaatgga taacaaagcg ctgctgagtc atgtggatat
    27781 caataacgtt gtgtgtgcca tgcctttgcc ctatacccgc ttgtacgaag gtttagcaag
    27841 cgggctgaaa gcccagtttg atggcattcc tttttattat gcgcatatgc gtggcgcgga
    27901 tattcgtgtg gagtgtttgc ttaacggtgt ctatgacatg gcagtagttt cccgcctggc
    27961 ggcggaaagt tatctcagcc aaaacaattt gtgcatcgcc ctcgagcttg gcccgcatac
    28021 gtatgttggt gaacatcaac tgatatgccg caaaggtgag tctggaaatg ttaagcgagt
    28081 aggtctcgat agtcgttcgg cggatcagaa aatcatgacc gatgtctttt ttggcgatag
    28141 tgatgtggaa cgtgtcgatc tctcttatca cgagagttta caacgcattg ttaaaggcga
    28201 tgtcgatgcg gttatctgga acgtggtggc ggaaaacgaa ctgaccatgc tgggattaga
    28261 ggcgacgccg ctcacagacg atccgcgatt tttacaggcc accgaagccg tggtcctgac
    28321 gcgagtcgat gattacccaa tgcaacaact gctgcgtgcc gttgtagata aacacgccct
    28381 gctcgcccat caacaacggg tagtgagtgg ggaacaggaa ccgagttatt aaacgaaagg
    28441 catctgatat ggaaaccaga ctcaacctgc tttgcgaggc aggcgttatt gataaggaca
    28501 tctgcaaagg catgatgcag gtcgtcaacg tactggaaac agagtgccat ctgccggtgc
    28561 gcagtgagca aggaacgatg gcgatgacac atatggcgag tgcactgatg cgcagtcgcc
    28621 gtggtgaaga aatagagccg ctggataacg aattgctggc agagctggcg caatccagcc
    28681 actggcaagc cgttgtgcaa ttgcatcagg tgttgttgaa ggaattcgca ctggaagtta
    28741 atccgtgtga agaaggctat ttgctggcca acctttatgg attatggatg gctgctaacg
    28801 aagaggtttg aagctcccga caaatccacg tcgcacaacc taaatattca aaaaaatgaa
    28861 tatttaattc aaggaacaga aacgaggcaa caagatgttt gtagaagcat tgaaacgcca
    28921 gaacccggcg ctgatttccg ccgcactaag tttgtggcag cagggcaaga tcgccccgga
    28981 cagctgggtg atcgacgtgg atcaggtact ggaaaacggt aagcgactga ttgagacggc
    29041 gcggctttac ggcattgaac tgtatctgat gaccaagcag tttggccgta acccatggct
    29101 ggcggaaaaa ttgctggcat taggttacag cggcattgtg gcggtggatt acaaagaggc
    29161 gcgagtcatg cgccgcgctg gtttgtcggt ggcgcatcag gggcatctgg tacaaatccc
    29221 ttgtcatcag gttgctgacg ccgttgaaca gggcaccgac gtcatcaccg tgtttactct
    29281 cgacaaagcg cgggaagttt ctgcggcagc ggtgaaggcc ggacgtgtgc agtttgtgct
    29341 gctcaaagtt tatagcgacg atgattttct ttatccgggg caggagagcg gttttgtaca
    29401 gcattcgctg cacgaggtgg ttgctgaaat taagaaactg ccgggtctgc atttagccgg
    29461 acttacccat ttcccttgcc tgctttggga tgaggctgcc ggaaaagttt tgccgacacc
    29521 gaatcttcac acgctgatac aggcacggga tcaactggcg aaatctggta ttgcacttga
    29581 gcaactgaac gcgccttcag cgaccagctg cacttcgctg ccattactgg cgcaatacgg
    29641 tgtgactcat gccgaacccg gtcatgcgct gacgggcact attccggcaa accagcaggg
    29701 cgatcagtct gaacgtatcg cgatgctctg gttgagtgaa atctcccatc atttccgtgg
    29761 cgacagctac tgctacggtg gcggttacta ccgtcgtggt catgcgcaac atgcgttggt
    29821 gtttacgcca gaaaatcaaa agattactga aaccaatctc aaaactgtgg atgacagcag
    29881 tatcgactac accctgtcgc tggcaggcga gtttccggta agcagtgcag tggtgctctg
    29941 tttccgcacg cagatttttg tcacccgtag cgatgtggtg ctggtgtccg gtattcaccg
    30001 tggcgaaccg aaaatcgttg gtcgttatga cagtcttgga aactctctgg gggcgtaatg
    30061 gcgcgatttg tggtgttagt gattgatagc tttggcgtag gggcaatgaa agatgtcacg
    30121 ctggtgcgtc cgcaagatgc gggagcgaat acatgtggtc acatcctgag ccagttgccg
    30181 catttgcagc taccaacgct ggagaagctg gggctaatca acgcattggg ttatgcgcca
    30241 ggcgatatgc agccgtcaga ttccgcaacc tggggcgtgg cagagctgca acatgaaggt
    30301 ggcgatacct ttatggggca tcaggaaatt ttaggcacgc gcccgttacc gccgctgcgg
    30361 atgccttttt gcgatgtgat tgaccgtgtt gagcaggcat tagtatccgc cggttggcag
    30421 gtggagcgcc gtggcgatga actgcaattt ctgtgggtca atcaggcggt tgcgattggc
    30481 gataatctcg aggcggattt aggccaagtc tataacatta ccgccaatct ctctgtgatc
    30541 tcttttgacg acgcaatcaa aattggtcgt atcgtgcgtg agcaggtaca ggtcggtcgg
    30601 gtcattacat ttggtggcct gttaaccgac agtcaacgca ttctcgatgc cgcagaaagc
    30661 aaagaagggc gctttattgg tatcaatgcg ccgcgttctg gcgcttatga caacggcttc
    30721 caggtcgtgc atatgggcta cggtgtcgat aaaaaagtgc aggtgccgca aaaactgtat
    30781 gaggcgggcg tgccaaccgt gctggtgggt aaggtggcag atatcgtcag caatccttat
    30841 ggcgtgagct ggcaaaacct ggtggatagc cagcggatta tggatatcac cctcgacgaa
    30901 tttaacaccc atccgacggc gtttatttgc accaatatcc aggaaaccga cctcgctggt
    30961 catgcagaag acgtcgcacg ttatgccgaa cgtttgcagg tcgttgaccg taaccttgcc
    31021 cggcttgttg atgcgatgca gccagatgat tgcctggtcg tgatggcgga tcacggcaac
    31081 gatccgacca ttggtcacag ccaccatacc cgcgaagtgg tgccgctgct ggtttatcag
    31141 caaggcctgg ctgctacgca gctcggtgtg cgcaccacgc tttctgatgt gggagctacc
    31201 gtgtgtgaat ttttccgtgc gccaccgcca caaaatggtc gctcttttct ttcctccctc
    31261 cggtttgcag gagacaccct atgagttttg atccgacggg ttacaccctg gcccatgagc
    31321 atctgcatat tgatctctcc ggctttaaaa acaacgtgga ctgccgcctt gatcagtatg
    31381 cgttcatttg ccaggagatg aacgacctga tgacccgggg tgtacgtaat gtgattgaga
    31441 tgaccaaccg ttacatgggg cgcaatgcgc aatttatgct cggtgtaatg cgcgaaaccg
    31501 ggatcaacgt ggtggcctgt actggttatt accaggatgc gtttttcccg gaacatgtgg
    31561 tgacccgcag cgtgcaggaa ctggcgcagg agatggtcga tgaaattgaa cagggtatcg
    31621 atggcacgga gctgaaagcc gggctcatcg cggagatcgg ctccagcgaa ggaaagatta
    31681 cgccgctgga agagaaggta tttattgccg ctgcgctggc gcataaccag accggacgcc
    31741 cgatctccac gcatacgtcg ttcagcacca tggggctgga acaactggct ctgttgcaag
    31801 cccacggagt tgatctttcg cgcgtcaccg ttggtcactg cgatctgaaa gacaacctcg
    31861 acaacatttt gaagatgatc gatctcggcg cgtacgtgca gttcgacacc attggtaaga
    31921 acagttacta cctggacgaa aagcgcattg cgatgctcca cgctacgtga ccgtgggttg
    31981 ctgaaccgcg tcatgctgtc gatggatatt acgcgccgct cccatttaaa agccaatggt
    32041 ggttatggct atgactattt attgaccacc tttattccgc aattgcgcca gtcaggattc
    32101 agtcaggccg atgtggatgt gatgttacgt gaaactccct ctcaattttt ccaataagga
    32161 cagactcatg aaaaagattg gcgttgcagg cttacagcgt gagcagatta aaaaaaccat
    32221 tgaagcgacg gctcctggca gttttgaagt tttcattcac aacgacatgg aagcggcaat
    32281 gaaagtgaaa tccgggcaac tggattacta catcggtgcg tgtaataccg gtgcgggcgc
    32341 ggcattgtcg attgccatcg cggtgattgg ctataacaaa agttgcacca ttgccaaacc
    32401 aggcattaaa gcgaaagacg agcatatcgc caaaatgatc gctgaaggaa aagtggcgtt
    32461 tggcctttcc gttgagcacg tcgaacacgc gattccgatg ctgattaacc atctgaaata
    32521 aaaggcacga ctatggatct gtatattcag attatcgtgg tggcgtgcct gacgggtatg
    32581 acatcgcttc tggcgcatag ctcggcggct gtttttcatg acggcatccg cccgatcctg
    32641 ccgcaactga ttgaaggcta tatgaaccgt cgcgaggcgg ggagtatcgc ttttggtctg
    32701 agcattggtt ttgtggcctc ggtggggatc tcttttaccc tgaaaaccgg gctgctcaac
    32761 gcatggttac tctttcttcc taccgatatc ctcggcgtac tggcgataaa cagcctgatg
    32821 gcgtttggtc ttggcgctat ctggggcgtg ttgatcctta cttgcctgtt gccagtaaac
    32881 cagctgctga ccgcgctgcc ggtggatgta ttaggtagcc tcggggaatt aagctcgccg
    32941 gtagtttctg cttttgcact gttcccgctg gtggcgattt tctaccagtt tggctggaag
    33001 caaagtctgg tcgccgccgt ggttgttctg atgacccgtg tggtagtcgt gcgctatttc
    33061 ccacatctta accctgaatc catcgaaatc tttattggca tggtgatgct gctggggatc
    33121 gcgataactc acgacctgcg tcatcgtgat gaaaatgata ttgatgccag cgggctttcg
    33181 gtgtttgaag aacgcacgtc gcggattatc aaaaacttac cctatatcgc catcgtggga
    33241 gcattgattg ccgccgttgc cagcatgaag attttcgccg gcagtgaagt gtcgatcttc
    33301 actctggaga aagcgtactc cgcaggcgta acgccggaac aatcgcaaac gctgatcaac
    33361 caggcggcac tggcagaatt tatgcgcggg ctgggttttg taccgttgat tgccaccacc
    33421 gccttagcaa cgggtgtgta tgcagttgcg ggctttacct ttgtttatgc ggtgggctat
    33481 ctctcgccga atccgatggt tgcagcggta ttaggcgcag tggttatttc ggcggaagtc
    33541 ttgctgcttc gttctatcgg caaatggctg ggacgctacc cgtcggtgcg taatgcgtcg
    33601 gataacatcc gtaacgccat gaatatgctg atggaagtgg cgctgctggt cggttcgatt
    33661 ttcgcagcaa ttaagatggc gggttatacc ggattctcta tcgcggttgc catttacttc
    33721 ctcaacgaat ccctgggccg tccggtacag aaaatggcgg caccggtcgt ggcagtaatg
    33781 atcaccggta ttctgctgaa tgttctttac tggcttggcc tgttcgttcc ggcttaagga
    33841 aggcacctat gaagacgttt cctctgcaaa gcctgacgct tattgaggcg cagcaaaagc
    33901 agtttgcgct ggtggacacg atttgccgtc actttcccgg cgcggagttt ctaaccagcg
    33961 gtgatttggg cttaacgccg gggctgaatc aaccgcgtat tacccaacgg gtggagcagg
    34021 tgctggctga tgcatttcac gcacaggctg cggcgctggt gcagggcgcg gggactggcg
    34081 cgattcgcgc cgggctggca gctttgctca aaccggggca gcgtcttctg gtgcatgacg
    34141 cgcctgttta cccgacgaca cgggttatta ttgagcagat ggggctgacg cttattactg
    34201 ttgatttcaa tgacctgtcg gcactgaagc aggtcgtcga cgagcaacaa ccggatgcgg
    34261 cgctggtgca gcatacgcgc cagcagccgc aggacagcta cgtgctggca gatgtgctgg
    34321 caacgttgcg ccagcgttaa ccgatgacaa ctatgcggtg atgaaggtgg cgcgaatcgg
    34381 ctgtgaatgc ggcgcgaatg tctcgacatt ttcctgcttc aagctatttg ggccagaggg
    34441 tgttggtgca gtggtcggcg atgctgatgt tatcaaccgt attcgcgcca cgctttactc
    34501 cggcggtagc cagatccagg gcgcacaggc gctggaagta ttgcgttgtc tggtgtttgc
    34561 gccagtgatg cacgcggtgc aggcaggggt atctgaacgg ttgctggctt tgcttaacgg
    34621 tggtgaggtg ccggaagtga aaagcgcggt gattgctaat gcgcagtcga aggtgttgat
    34681 tgtcgagttt catcagccga ttgccgccag agtgctggaa gaggcgcaaa agcgcggtgc
    34741 cttgccttac ccggtgggtg cagagtcgaa atatgaaatc ccgccgctct tttatcgcct
    34801 ttccggaacg tttcgccagg cgaatccaca atcagaacat tgtgcgattc gcattaaccc
    34861 gaatcgcagc ggtgaagaga cggtgctgcg gattttgcgt gagagtattg ccagtattta
    34921 atgctggata gcaccgtcaa gctaaattcc gtactgaacg gtcccctcgc ccctttgggg
    34981 agagggttag ggtgagggga acgtacggga tgtaaaattc aacgcgccag catcgccgga
    35041 tgcgatgctg gcgcatctta tccggcctac ggttaatgtc ttttattatc aatagttaag
    35101 gtgatgcgat tggcgcggca gaagagttcg gagacgtgca ccggtttgtc attctgatca
    35161 aaggcgattt tgctgatgcg aaacaacggt tcgcccagtt cgcatttcag ccattttgcc
    35221 tgcgggcggg tggcggcaaa gatatcgatg gtctttttgt cgctgaccac tcgcgtgtca
    35281 aaacgctcct gaaataactg ataggtggag cttccttcga cgtaaatctc atcaaagtca
    35341 ggataacgcg acagcgggat ccatgaacta tcaataaaca gcggctcttt atcgagatac
    35401 atcacccggc agagatggaa cacttcgctg tttccgggga tgttcagctt tttgcaaaac
    35461 ggcgcggcgc tgacccgttc ctgttcgatc actttctctt tcgtcgcctt gccttgtgag
    35521 acgccaaaat cggtaaaacc actgacagta agcagggcgt tttcaacttt ctggctttgt
    35581 acaaaggtgc cttttccctg ccagcggatc agtacgccgt ccgccactaa gtcgctgatg
    35641 gctttgcgaa tggtaatgcg gctgacgtta tattgtgtac aaagctcgtt ttcggtaggg
    35701 atctgttgcc cggcctggta aaccccctgc gcgatatcat ccagcagtcg ctggcggacg
    35761 gtagcgtaga ggagttgatg agagtagcgg tccgtagctg acataatcga ccctgaaata
    35821 aagaatgaat tactcggatt atagggtcgt tttccggcaa gtaacagcac gttggcgtga
    35881 agatgctcac gccaacgtta tacctaccag gcaccgtggt actgaatggt tttcgccgcg
    35941 cacgccgttc cctgcgccat cgcctgcggt aatgtcatcc ccgcagacca gccgcaaagg
    36001 aatccggcaa tgaacgaatc tccggcaccc atggtgtcga taaccgtcac cggttcagga
    36061 gcctgacgcc agaactgcgc gccatcccag gcaatgctgc cgttttcacc cagcgtgaca
    36121 atcactgttc ctgcgccacg ggcaacaatc gctttcatct tcagacgcag cgtttcgtct
    36181 tcttgcggtg cggaggcaaa ggcaaaatcg agatgcggca ccagtgtctg ccagagcggg
    36241 ctgtcccact tgtcggagaa gtcgaaagcg gtaagtttgc ccgcagcgtg cagctgtggg
    36301 aatgcgtctt ccgcatgtcc ccagattgcc gcgtgcacaa tgtcatactg cgccagccag
    36361 gcgtaatcct cttcactcag ggcaaagtcg gccatcacgc cttcggtgta gtcgccaaaa
    36421 acgcgatcat tgtcgtgcag ttccacctga gtttgtgcgg taacgccgtg tttcgtatgg
    36481 acatggctga tatcgacgcc catgcgggcg agatcctgct tcagctttgt gccgtagtca
    36541 tcgtcaccca cccaggtaat gcatcccggc tgtatgccgt agcgagtgca gtacaccgcc
    36601 acattgaccg cattaccgcc agaaaacgct ttattcagtt gcgggtagat atcgacgcag
    36661 ttatcgccga ttgtcgccag ggttttcatc tctcatcctc cggcagcagc gcgcgaaagc
    36721 gttccagcgc ctggcgggca tagagtctgg gctcgttcat atacatcgtc accagctcca
    36781 ccgtacagta accctcatag ccccgctcaa taatatcgcg catcagttcc cgcagcggca
    36841 ttttgccttc tccaggaatg taatgcgtgt cgctggcccc gtcgctgtcg acaatatgca
    36901 gatgacgtaa tttatcgccc agtttgtcga aataactcat caccggttcc gcctggacat
    36961 acggcgcgca aatgtcgacc atgctgaaca ggcgcggcga aggcaccagc gccagcgcat
    37021 gaagcacatc attagcatta cacacgatgt tcgattcata cggcgttaac ggttcgagga
    37081 ttagatccat gccgatgttt tccgcgtact catacagttc gcttaggttc tctgccagcc
    37141 gtccccagat aacattaggt ggcgtgagat agcccgcgtg ggccgcggaa atcagcgtat
    37201 aacccgcgtt catctctttt gccatatcca tcgccagctt gatcatgtcg aggctttcgc
    37261 gacgcatatg ttcatcgccc agcatcatgt tatacggata gccattggtt tctggcgtat
    37321 agccgataat cggcatctga tacgtctgcg ccagcgcctt gatttgtttg atgccgcccg
    37381 cttttaagtc cggcgcgaac gcgtgcgggc gaccgcccca aatttcgatg ccgtcgtaac
    37441 ccagctcgct tgcatcacga aatgcgtgtt caataggcag ccgctggtgg ccgcaggtaa
    37501 acatacctgt tttcatcggg taactccttg cgtaaatccg gcccgttgcc gggccgggcg
    37561 agggattaat attccaccag accaccgtaa tagcggcgtt catccgggtt gtgatctttg
    37621 taaatagaca ggtagtagca gagccactcc attggcacga acatcaggaa cggtgccagc
    37681 cacgggtgca gcccttgcga aatttcggcg taatcgatga cgatcacgtt gtcagtacgc
    37741 tgtttaacaa agttaatggc gcgttcggtg gtgtggcgac tttcatcatt gccgagcagg
    37801 aacaggaacg gaacgcccgg ttcgacaatc tccagcgggc catggcggaa ctctccgctc
    37861 tcaatcacgc agccgtgcgt ccaggtaaat tccatcagcg ttacaatgcc ttctttgtaa
    37921 cccagcggac gcagcggacc cgcagcaacg gtataaatca tcggccactg gctggccagt
    37981 tcaccaagct ggcggccttt ttcttcccag gtgcgtacca gatgaccgag cgcattcggc
    38041 aactgcttga gatcgttttt gatcttgccg atttccgcgt tcggcgcgag gcgggtgatc
    38101 atctccagca ccacgctgta gcagagcagc aggtgaattt cccagataca gtcggcctga
    38161 taatcaatgc taaattccgc cgccgaggta atcgggctgt ccgcgcgttt ggtgaacgcc
    38221 gcagtgagtg cgccgcaggc ccggcccagc tccagcgctt tgattacctc ttccgtttta
    38281 ccgtagtcag aaacgccaat caccgcgcaa cgatcgtcga ggcgatacgg ggtgttatcg
    38341 cagaactccc agccggaaat ggcgtagacc tgaagatcgg aaaagcgatc cgccagatgt
    38401 ttcgccgctt gcgccgcgtt gagtggcgag ccgcaggcaa cgaaataaat acgatcaatg
    38461 tcgcgcttca ccatctcttc cacgatggcg tgcaccagcg gaacgtcatg gctgagaact
    38521 ttttccactt cctgaaccat attttcggtg accagaaagt ccacggtgct tttatcaata
    38581 tccaacattt tattttctcc agataacatt acgacaaagc gttgagctgg cggctacgct
    38641 tcgcccagaa ggcgtaagca ggcagaccag tagcaataac gatgacggcg cagataaggc
    38701 cgggaatcgg tgcccagaca aaggttgagg cgaccagaat gaggcttgac gcaatggcga
    38761 gggtggtcat cagcccgaaa gcaggagtac gccacagcgg tttgtaatcg tcgcgtttac
    38821 gacaccagat gatggagccg aaggtgaggg tatttttgaa acacatcacc agggtgaaat
    38881 aacccagcag gctggtgaga tcggaaacga agatgaagaa gagcccctgc gccccttgca
    38941 ggatgatgga gacatccggc gtgttgtatt tcggatgcac atggccgaag catttaaaga
    39001 acaggttgtc tttcgccatc gcgtattcca gccgcggctg gtacatcacg cagctggaaa
    39061 gcgaaccaag aatgacgatc atcgccgtga tggcaacaaa gatcccagcg gtgctgccga
    39121 gtgcggggat ccaggtcagg gcgtcggaaa tcggcgtttc agaattggcg agtttgtcga
    39181 agggcatcag gtcggaaatc accagcgcca gcagggtgta gagcaccaga accagcagac
    39241 aggaaccaat cagcgctcgt ggcatggttt ttccggggtt tttaatttcg ccggtcatat
    39301 aacagataga ggccatgccg gtatacgacc aactggtggc agagatcccc gccagcagcg
    39361 ccataaagct gcccgttgcg ccaatcgcag tggtggtagg ggcggcaaaa ttctccgctt
    39421 taaaccagaa gatcccaagg ccaatgacga tagtgaacgg gataattttg gcgatggtaa
    39481 ttagcgtctg aaacgctgcg ccgccttcaa cggagcgcag gtgtagcaac ataaaggcga
    39541 taattaatcc ggcggcgata aatttaccgg gcaacggatc gataggcgtt aaaaagccaa
    39601 gattgctgac aatcgccagc gccataatcg acaatgacgg cgcatcgttg gcccagaagc
    39661 tggcccagcc ggagaggaaa gccagcggtc ggcttccggc atttttcaga taaacataat
    39721 ctgcgccatt ttccggataa gcggtggata gttccgcata gacgcacatt tgcgggatca
    39781 caattaaccc gccaatgaca aacgtgagca ccgtaagcca cggcgtgccc gctgcttttg
    39841 ccacttcacc cacagataca aaaataccgg agccgacggt tgtcccgacg gcgattgcaa
    39901 gaacggccca aaatccgagc ttgcgttgga gttcctggct tcccatagcg ataccttttt
    39961 cttgtccaac acgttgtagg ggagagtttg cagtcattta aaaggtaaca tgacaatgca
    40021 tgatgaatat aataacatat gatgttatgt aatgcggagg aagatcacaa aatttcgcac
    40081 aggatcgcgc tgtggctaat gaatgtagtt atccaattga aattaaagtg aaaatatttt
    40141 tacgggtggg gagcaagaag gatatagaaa caaatacgcc ctcggaaaat ccagagggcg
    40201 tcgggcaatt aaaccggtgt tagccgattt ctgtcagaga cttactgtgc agtaggaccg
    40261 caaccgccaa tgattttaga aatagaaatt gccgggtgca gcaggtagtc gtaagagcag
    40321 ttcttatcac ggttttcaat atgaccagta catgcagtta acgtagccag tactgcacct
    40381 accagtgcaa ctttaataaa tttgttcatt taca
//
LOCUS       DAJVUP010000015        40281 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.015, whole genome shotgun sequence.
ACCESSION   DAJVUP010000015 DAJVUP010000000
VERSION     DAJVUP010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40281
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.015"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(208..414)
                     /locus_tag="OQQ75_000767"
     CDS             complement(208..414)
                     /locus_tag="OQQ75_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfA family protein"
                     /protein_id="HCS1975196.1"
                     /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH
                     RVWSKTSDKPVWMEQAEKATGDFY"
     gene            727..816
                     /gene="kdpF"
                     /locus_tag="OQQ75_000768"
     CDS             727..816
                     /gene="kdpF"
                     /locus_tag="OQQ75_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HCS1975197.1"
                     /translation="MSAGVIAGVLLVFLLLGYLVYALINAEAF"
     gene            816..2489
                     /gene="kdpA"
                     /locus_tag="OQQ75_000769"
     CDS             816..2489
                     /gene="kdpA"
                     /locus_tag="OQQ75_000769"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706533.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HCS1975198.1"
                     /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTAGVER
                     ILFRLPGVSDHEMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA
                     LNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFAFIRAFTRQSM
                     STLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGP
                     VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGD
                     RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGADSSINMEGKESRFGVLVSSL
                     FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF
                     IAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGP
                     HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV
                     SKKSQPASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS"
     gene            2512..4560
                     /gene="kdpB"
                     /locus_tag="OQQ75_000770"
     CDS             2512..4560
                     /gene="kdpB"
                     /locus_tag="OQQ75_000770"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HCS1975199.1"
                     /translation="MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSL
                     LTTCISIAMASGAMPGNALFSAAISGWLWVTVLFANFAEALAEGRSKAQANSLKGVKK
                     TAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG
                     ESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNE
                     IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV
                     AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLA
                     DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM
                     IRKGSVDAIRRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVK
                     GGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA
                     EGRLVAMTGDGTNDAPALAQADIAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGK
                     QMLMTRGSLTTFSITNDVAKYFAIIPAAFAATYPQLNALNIMRLHSPDSAILSAVIFN
                     ALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV
                     "
     gene            4569..5112
                     /gene="kdpC"
                     /locus_tag="OQQ75_000771"
                     /pseudo
     CDS             4569..5112
                     /gene="kdpC"
                     /locus_tag="OQQ75_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308751.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
     gene            5105..7789
                     /gene="kdpD"
                     /locus_tag="OQQ75_000772"
     CDS             5105..7789
                     /gene="kdpD"
                     /locus_tag="OQQ75_000772"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdpD"
                     /protein_id="HCS1975200.1"
                     /translation="MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAE
                     AQRLRAQGLDIVVGVVETHGRKDTDAMLEGLAVLPPKRLAYRGRHICEFDLDAALARR
                     PALILMDELAHSNALGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI
                     QVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIAL
                     RELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASR
                     LGSVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE
                     HNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDSRSFK
                     DKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV
                     ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR
                     EQRTRHLYEMSKALAVGRSPQDIAATIEQFIASTFHARSQVLLPDDNGKLQPLTHPQG
                     MTPWDDTIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMI
                     PEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVL
                     FGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLT
                     LEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE
                     IGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIV
                     DVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM"
     gene            7786..8463
                     /gene="kdpE"
                     /locus_tag="OQQ75_000773"
     CDS             7786..8463
                     /gene="kdpE"
                     /locus_tag="OQQ75_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HCS1975201.1"
                     /translation="MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATR
                     KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP
                     FGIGELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFHLL
                     AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETG
                     IGYRFML"
     gene            complement(8679..8936)
                     /locus_tag="OQQ75_000774"
     CDS             complement(8679..8936)
                     /locus_tag="OQQ75_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975202.1"
                     /translation="MQKPLPVRWLIIQGLTENEHCGIQAYACNTESQEDLYAEVPLVG
                     RLTGIEEVKVEAIAMSKLHNMSCPPYMGHSAAVIFHLIYLS"
     gene            9059..11257
                     /gene="speF"
                     /locus_tag="OQQ75_000775"
     CDS             9059..11257
                     /gene="speF"
                     /locus_tag="OQQ75_000775"
                     /EC_number="4.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase SpeF"
                     /protein_id="HCS1975203.1"
                     /translation="MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVT
                     CGKLDEIDATGYGIPVFIATENQERVPAEYLPCISGVFENCESRREFYGRQLETAASH
                     YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRSDLC
                     NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVL
                     FDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQR
                     TKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCS
                     PLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMH
                     ASTSPFYPLFAALDINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELV
                     DGKPWQSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGFDARNG
                     EYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLL
                     ESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQPQKEMFRKEHFPRV
                     SMNPQEANYAYSRGEVELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFS
                     ALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQSTLLKGEKL"
     gene            11254..12592
                     /gene="potE"
                     /locus_tag="OQQ75_000776"
                     /pseudo
     CDS             11254..12592
                     /gene="potE"
                     /locus_tag="OQQ75_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415219.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine-ornithine antiporter"
     gene            12668..12817
                     /locus_tag="OQQ75_000777"
                     /pseudo
     CDS             12668..12817
                     /locus_tag="OQQ75_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415222.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
     gene            12941..13591
                     /locus_tag="OQQ75_000778"
     CDS             12941..13591
                     /locus_tag="OQQ75_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001208812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 domain-containing protein"
                     /protein_id="HCS1975204.1"
                     /translation="MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKNLAETALY
                     QLQVTTKSPMGALVYGSGGLLIDNGWLRIAGSGHPRLPRDPVSWTQRPEFAGVRALPI
                     ADDVAGGIFALNGGDLGEDTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYEN
                     VRWQQWREDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ"
     gene            complement(13632..14126)
                     /locus_tag="OQQ75_000779"
     CDS             complement(13632..14126)
                     /locus_tag="OQQ75_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975205.1"
                     /translation="MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTR
                     RLTGSIAVNIAPSRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPG
                     WQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKA
                     INTH"
     gene            complement(14341..15981)
                     /gene="pgm"
                     /locus_tag="OQQ75_000780"
     CDS             complement(14341..15981)
                     /gene="pgm"
                     /locus_tag="OQQ75_000780"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HCS1975206.1"
                     /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT
                     SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL
                     AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP
                     NGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADI
                     VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA
                     IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ
                     HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES
                     AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA
                     AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP
                     SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA"
     gene            complement(16007..16552)
                     /gene="seqA"
                     /locus_tag="OQQ75_000781"
     CDS             complement(16007..16552)
                     /gene="seqA"
                     /locus_tag="OQQ75_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HCS1975207.1"
                     /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP
                     VTKEVRVASPAIAEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD
                     AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI
                     EHIMQSMQFPAELIEKVCGTI"
     gene            16737..17501
                     /gene="ybfF"
                     /locus_tag="OQQ75_000782"
     CDS             16737..17501
                     /gene="ybfF"
                     /locus_tag="OQQ75_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1975208.1"
                     /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN
                     IIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALA
                     RDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ
                     FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPSGNSPYVSEQYRDDLL
                     AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND"
     gene            17641..17934
                     /gene="ybfE"
                     /locus_tag="OQQ75_000783"
     CDS             17641..17934
                     /gene="ybfE"
                     /locus_tag="OQQ75_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415211.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HCS1975209.1"
                     /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR
                     DKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV"
     gene            18074..18604
                     /gene="fldA"
                     /locus_tag="OQQ75_000784"
     CDS             18074..18604
                     /gene="fldA"
                     /locus_tag="OQQ75_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HCS1975210.1"
                     /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL
                     EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL
                     GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW
                     VKQISEELHLDEILNA"
     gene            18814..18900
                     /gene="uof"
                     /locus_tag="OQQ75_000785"
     CDS             18814..18900
                     /gene="uof"
                     /locus_tag="OQQ75_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001491546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fur leader peptide"
                     /protein_id="HCS1975211.1"
                     /translation="MIRIISRANSVTSSNEVNRLVTGQIPHD"
     gene            18893..19339
                     /gene="fur"
                     /locus_tag="OQQ75_000786"
     CDS             18893..19339
                     /gene="fur"
                     /locus_tag="OQQ75_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HCS1975212.1"
                     /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI
                     DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF
                     SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK"
     gene            complement(19424..19750)
                     /locus_tag="OQQ75_000787"
     CDS             complement(19424..19750)
                     /locus_tag="OQQ75_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975213.1"
                     /translation="MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP
                     EKIEACQSVLNVLKKEKQHQHFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE
                     IRSNNK"
     gene            complement(19800..21206)
                     /gene="chiP"
                     /locus_tag="OQQ75_000788"
     CDS             complement(19800..21206)
                     /gene="chiP"
                     /locus_tag="OQQ75_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitoporin"
                     /protein_id="HCS1975214.1"
                     /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG
                     IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAVFTAIEMAEN
                     GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
                     APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV
                     DYLHSLGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD
                     KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPAYAS
                     SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQS
                     NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI
                     FQDERDVKFMVIAPFTIF"
     gene            complement(21653..23317)
                     /gene="glnS"
                     /locus_tag="OQQ75_000789"
     CDS             complement(21653..23317)
                     /gene="glnS"
                     /locus_tag="OQQ75_000789"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HCS1975215.1"
                     /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
                     AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSD
                     YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK
                     MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI
                     SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
                     LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTRQDNTIEMASLESCIRE
                     DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSSEIWIDRAD
                     FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG
                     RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL
                     KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE"
     gene            complement(23520..25466)
                     /gene="nagE"
                     /locus_tag="OQQ75_000790"
     CDS             complement(23520..25466)
                     /gene="nagE"
                     /locus_tag="OQQ75_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetyl glucosamine transporter subunit
                     IIABC"
                     /protein_id="HCS1975216.1"
                     /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA
                     GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI
                     ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH
                     AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR
                     FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV
                     TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS
                     QNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQL
                     ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI
                     VGAKAESIGDAMKKVVARGPVAAASAEATPSTAAPVAKPQAVPNAVSIAELVSPITGD
                     VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI
                     VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD
                     FSGLIIKAQGHVVAGQTPLYEIKK"
     gene            25799..26599
                     /gene="nagB"
                     /locus_tag="OQQ75_000791"
     CDS             25799..26599
                     /gene="nagB"
                     /locus_tag="OQQ75_000791"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008805656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HCS1975217.1"
                     /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT
                     PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE
                     NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK
                     TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEG
                     CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL"
     gene            26659..27807
                     /gene="nagA"
                     /locus_tag="OQQ75_000792"
     CDS             26659..27807
                     /gene="nagA"
                     /locus_tag="OQQ75_000792"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HCS1975218.1"
                     /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR
                     SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT
                     SDELMKQGVRVMREYLARHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC
                     ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY
                     NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA
                     PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM
                     ATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ"
     gene            27816..29036
                     /gene="nagC"
                     /locus_tag="OQQ75_000793"
                     /gene_synonym="nagR"
     CDS             27816..29036
                     /gene="nagC"
                     /locus_tag="OQQ75_000793"
                     /gene_synonym="nagR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NagC"
                     /protein_id="HCS1975219.1"
                     /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL
                     APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL
                     FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP
                     DSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV
                     RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ
                     RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN
                     PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR
                     AMLNGILLQHLLEN"
     gene            29084..29836
                     /gene="nagD"
                     /locus_tag="OQQ75_000794"
     CDS             29084..29836
                     /gene="nagD"
                     /locus_tag="OQQ75_000794"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide monophosphatase NagD"
                     /protein_id="HCS1975220.1"
                     /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNY
                     PSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA
                     GFTITDVNPDFVIVGETSSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALC
                     AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI
                     LVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI"
     gene            30233..31897
                     /gene="asnB"
                     /locus_tag="OQQ75_000795"
     CDS             30233..31897
                     /gene="asnB"
                     /locus_tag="OQQ75_000795"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001724523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase B"
                     /protein_id="HCS1975221.1"
                     /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA
                     ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV
                     ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVAS
                     EMKSLVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDFDAVKDNVTDKNELRQALED
                     SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP
                     GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS
                     RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKA
                     MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFESYLPASVAWRQK
                     EQFSDGVGYSWIDTLKEVAAQQVSNQQLETARFRFPYNTPTSKEAYLYREIFEELFPL
                     PSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSAYK"
     gene            32278..32354
                     /locus_tag="OQQ75_000796"
     tRNA            32278..32354
                     /locus_tag="OQQ75_000796"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32312..32314,aa:Met,seq:cat)
     gene            32363..32447
                     /locus_tag="OQQ75_000797"
     tRNA            32363..32447
                     /locus_tag="OQQ75_000797"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32397..32399,aa:Leu,seq:tag)
     gene            32471..32545
                     /locus_tag="OQQ75_000798"
     tRNA            32471..32545
                     /locus_tag="OQQ75_000798"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32503..32505,aa:Gln,seq:ttg)
     gene            32580..32654
                     /locus_tag="OQQ75_000799"
     tRNA            32580..32654
                     /locus_tag="OQQ75_000799"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32612..32614,aa:Gln,seq:ttg)
     gene            32670..32746
                     /locus_tag="OQQ75_000800"
     tRNA            32670..32746
                     /locus_tag="OQQ75_000800"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32704..32706,aa:Met,seq:cat)
     gene            32795..32869
                     /locus_tag="OQQ75_000801"
     tRNA            32795..32869
                     /locus_tag="OQQ75_000801"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32827..32829,aa:Gln,seq:ctg)
     gene            32907..32981
                     /locus_tag="OQQ75_000802"
     tRNA            32907..32981
                     /locus_tag="OQQ75_000802"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32939..32941,aa:Gln,seq:ctg)
     gene            complement(33135..34310)
                     /gene="ubiF"
                     /locus_tag="OQQ75_000803"
     CDS             complement(33135..34310)
                     /gene="ubiF"
                     /locus_tag="OQQ75_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706550.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HCS1975222.1"
                     /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFSVTVIEHAEPAPFVA
                     DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL
                     PLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRDNDLQELELKGGETIRAKL
                     VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL
                     FDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL
                     QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY
                     QMRRMADNFIMQSGMDLFYAGFSNNLPPLRFVRNLGLMAAERAGVLKRQALKYALGL"
     gene            34456..35880
                     /gene="miaB"
                     /locus_tag="OQQ75_000804"
     CDS             34456..35880
                     /gene="miaB"
                     /locus_tag="OQQ75_000804"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HCS1975223.1"
                     /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL
                     LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII
                     FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY
                     CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSF
                     ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL
                     MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY
                     SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT
                     SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV
                     AETPESVIARTRKENDLGVGYYQP"
     gene            36033..37073
                     /locus_tag="OQQ75_000805"
     CDS             36033..37073
                     /locus_tag="OQQ75_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HCS1975224.1"
                     /translation="MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRD
                     NHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLTIKEARVLEQSAESV
                     PEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL
                     ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIER
                     NVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDL
                     PRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAAL
                     AAERKREEQEQK"
     gene            37070..37537
                     /gene="ybeY"
                     /locus_tag="OQQ75_000806"
     CDS             37070..37537
                     /gene="ybeY"
                     /locus_tag="OQQ75_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014169133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HCS1975225.1"
                     /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR
                     VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK
                     PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE"
     gene            37627..38505
                     /gene="corC"
                     /locus_tag="OQQ75_000807"
     CDS             37627..38505
                     /gene="corC"
                     /locus_tag="OQQ75_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308723.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HCS1975226.1"
                     /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS
                     GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR
                     FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS
                     QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA
                     SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ
                     VHVKIPDDSPQPKLDE"
     gene            38530..40068
                     /gene="lnt"
                     /locus_tag="OQQ75_000808"
     CDS             38530..40068
                     /gene="lnt"
                     /locus_tag="OQQ75_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HCS1975227.1"
                     /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL
                     QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLS
                     LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL
                     KGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP
                     EKTIQVSMVQGDIPQSLKWDGDQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN
                     QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN
                     KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSVNGIELTAAICYEIIL
                     GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA
                     VIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR
                     ARKR"
BASE COUNT         9598 a        10299 c        10483 g         9901 t
ORIGIN      
        1 gctgacaggc aaaaccctac agatttataa gaaagcctta agtgagatat ccatcagata
       61 gaaacaatta ggaaaatatt tatatatttt tcctgaatat atttcagctg ggtaatacca
      121 tatctaaata tttacctgaa catcttccta ataaaaaaac cgccagcatc tccactagcg
      181 gttttcaatg tattcaaaac tcggcaatca gtaaaaatca ccggttgcct tttcggcctg
      241 ttccatccaa accggtttat cgctggtttt cgaccagacg cggtgcaggt agctgtaaaa
      301 gcgggcgcgg tctttccaga aaagcatgaa aggcagcgcc agaacgcccg ctgcaaccgc
      361 atatgtacgg cgtaaaaaga taagccatgc aggatattct ctgtagagtt ccatactttt
      421 ctcccccttt tgtatctacc cggtgaatag caccggaaaa atgaatttgt ttatctgatg
      481 aaaatagtac cgccttttgt gtaattttac tactcatccg accacttatt tttgcttatt
      541 gatggtttat ttacattcac tctgtaatta agttgcataa aagttaaatt aatgctaaac
      601 attagttaaa ccatggcttt tgccattttt atactttttt tacaccccgc ccgcagattt
      661 ttgcgaaatc tttgcagcca gaattctact cttccggtat cacttttagg ccactggagg
      721 tgcactgtga gtgcaggcgt gatagccggc gtgttgctgg tgtttttatt actgggttat
      781 ttggtttatg ccctgatcaa tgcggaggcg ttctgatggc tgcgcaaggg ttcttactga
      841 ttgccacgtt tttactggta ttaatggtgc tggcgcgtcc tttaggcagc gggctggcgc
      901 ggctgattaa tgacattcct cttccaggta cagcgggcgt tgaacgtata ctctttcgtt
      961 tacctggcgt ctctgaccat gagatgaact ggaagcaata tctttgtgcc attctcggcc
     1021 tgaacatgct ggggctggcg gtgctgtttt ttatgttgct cggtcagcac tatctgccgc
     1081 ttaatccaca gcagttgccg gggctgtcgt gggatctggc gctgaatacc gccgtcagct
     1141 ttgtcacgaa taccaactgg caatcttata gcggtgaaac cacgttgagc tatttcagcc
     1201 agatggcagg cttaacggta caaaactttc tttctgccgc cagcgggatt gcggtgattt
     1261 ttgccttcat ccgtgcgttt actcgccaga gcatgagcac actcgggaat gcctgggtcg
     1321 atctgctacg catcacgtta tgggtgctag tccctgtggc gttgttgatc gcactgtttt
     1381 ttattcaaca aggtgcgctg caaaactttc tgccctatca ggcagtgaat accgttgaag
     1441 gagcgcaaca gctgttaccc atgggaccag tagcttctca ggaagcgatc aagatgctcg
     1501 gtactaacgg cggtggcttc tttaatgcca actcgtcgca tccgtttgaa aacccaaccg
     1561 cactgaccaa cttcgtgcag atgctggcga tcttcttgat cccaacagct ctgtgctttg
     1621 cctttggtga agtgacgggc gatcgccgcc aggggcgcat gttgctgtgg gcgatgtcag
     1681 tgatttttgt catctgcgta ggcgtggtta tgtgggcaga agttcagggt aatcctcatc
     1741 tgctggcgct cggcgcagac agcagcatca atatggaagg taaagagagc cgtttcggcg
     1801 tgctggtcag tagcctgttt gcggtcgtga ctacggcggc gtcctgtggc gcggtgattg
     1861 cgatgcatga ttcgtttacc gctctcggcg gcatggtgcc gatgtggcta atgcaaattg
     1921 gtgaagtggt gttcggcggt gtcggttctg gtctttacgg catgatgctg tttgtcctgc
     1981 tggcggtgtt tattgccggg ctgatgattg gtcgtacacc ggaatatctg ggtaaaaaaa
     2041 tcgacgtacg cgagatgaaa ctgactgcac tggcgattct ggttactcca acactggtac
     2101 tgatgggcgc ggcgttggcg atgatgaccg acgccggacg tagcgccatg cttaaccctg
     2161 gcccgcatgg ttttagcgaa gtgctgtacg ccgtgtcgtc cgccgctaac aacaacggca
     2221 gcgcctttgc cggattaagc gccaactctc cgttctggaa ctgtttactg gcgttctgca
     2281 tgtttgtcgg tcgcttcggg gtgattatcc cggtgatggc aattgccggt tcgctggtga
     2341 gtaaaaagag ccaacccgcc agctccggca cgctgccaac gcacggcccg ctgtttgttg
     2401 gcctgttaat cggcaccgtg ttgctggttg gcgcactgac ctttatccct gccctggcgc
     2461 ttggtccggt ggcggaatat ctctcctgat gatattgagt gagcactgaa tatgagtcgt
     2521 aaacaactgg cgctattcga accaacactt gtcgttcagg cgctgaaaga agcggtgaaa
     2581 aaattaaacc cgcaggcgca atggcgcaat ccggtgatgt ttatcgtctg gatcggcagt
     2641 ctgctgacca cctgtattag catcgcgatg gcaagcggtg cgatgcctgg caatgcgctg
     2701 tttagcgcgg caattagcgg ctggctgtgg gtcaccgtac tgttcgctaa tttcgccgag
     2761 gcgctggcag aaggccgcag taaagcgcag gccaacagtc ttaaaggggt gaaaaaaact
     2821 gcctttgccc gcaagctgcg tgagccgaaa tatggcgctg cggcggacaa agttcctgcc
     2881 gatcaactgc gtaaaggtga catcgtgctg gtagaagctg gcgatattat cccctgcgat
     2941 ggtgaagtca ttgaaggcgg cgcatcggtc gatgaaagcg ccatcaccgg ggaatcggca
     3001 ccggtgatcc gtgaatccgg cggcgatttt gcctccgtca ccggcggcac gcgtattctt
     3061 tctgactggc tggtgattga gtgtagcgtt aaccccggtg agacatttct ggatcggatg
     3121 atcgcgatgg tggaaggcgc acagcgacgc aaaacaccga acgagattgc cctgactatc
     3181 ctgctgattg ctctgaccat cgtcttttta ctggcaaccg ccacgctgtg gccgttttcc
     3241 gcgtggggcg gtaatgccgt gagtgtaacg gtactggtgg cgctgctggt ctgtctgatc
     3301 ccaaccacta ttggcggcct gttgtcagcg atcggcgtcg ccgggatgag tcggatgctg
     3361 ggcgcgaatg tgattgccac cagcggacgt gcagttgaag cggcaggtga cgttgacgtt
     3421 ctgctactgg ataaaaccgg caccatcaca ctcggtaacc gtcaggcgtc ggagtttatc
     3481 cctgcgcagg gcgtggatga aaaaacgctg gctgacgccg cacaactggc ttcgctggct
     3541 gatgaaacgc cggaaggccg cagtattgtg atcctcgcca agcaacgttt taacctgcgc
     3601 gagcgcgatg tgcagtcgct ccatgccacc tttgtaccgt ttactgcgca aagccggatg
     3661 agcgggatca acatcgacaa ccgcatgatc cgtaaaggtt ctgtcgatgc cattcgccgc
     3721 catgttgagg ctaacggcgg tcacttccct gccgatgttg atcaaaaagt cgatcaggtt
     3781 gcgcgtcagg gggccacgcc gctggtggtg gtggaaggtt cccgtgtgct gggcgttatt
     3841 gcgctgaaag atatcgtcaa aggcggtatt aaagagcgct tcgcccagct gcgcaaaatg
     3901 ggcattaaaa cggtgatgat taccggcgat aaccgtctga ctgccgccgc cattgctgcg
     3961 gaagcgggcg tcgatgattt tctcgccgaa gcgacaccgg aggccaagct ggcattgatt
     4021 cgtcagtatc aggcggaagg ccgtttggtg gcgatgaccg gcgacggcac caacgatgct
     4081 ccggcgctgg cgcaagcaga tatcgcggtg gcgatgaact ccggcaccca ggcggcgaaa
     4141 gaggcgggca atatggtcga tctcgactct aacccgacca agttgatcga ggtggtgcat
     4201 attggcaaac agatgctgat gacccgtggc tcgctgacca ccttcagcat taccaacgat
     4261 gtggcgaaat acttcgccat tattccggcg gcgttcgcgg caacgtatcc gcagttaaat
     4321 gcgctgaaca tcatgcgcct gcattcgccc gactccgcca ttctcagtgc agtcattttc
     4381 aacgccttga ttatcgtctt tttgattcct ctggcgttaa aaggcgtgag ttataaaccg
     4441 cttaccgctt ctgccatgtt gcgccgtaac ttatggattt acggtctggg tgggctgctg
     4501 gtgccgttta ttggtatcaa agtcattgat ttactgctga ccgtttgcgg tctggtgtga
     4561 ggtttaccat gcgtggctta cgtccggcat tatcgacatt tatctttctg ttattgatta
     4621 ctggcggcgt ttacccgctg ctgaccaccg tgctggggca atggtggttt ccctggcagg
     4681 ccaacggttc gttgattcgt gaaggtgata cggtgcgggg ttcggcatta atcgggcaga
     4741 attttaccgg caacggcaga aatgccctat aatccacagg cttctggcgg gagcaatctg
     4801 gcggtcagta accctgagct ggataaacaa atagccgcac gcgttgctgc attacgggcc
     4861 gctaacccgg atgccagtac gaacgttccg gttgaactgg tgacggcatc ggcaagcggg
     4921 ctggacaata atatcacccc gcaagcggcg gcctggcaga tcccacgcat cgcgaaagcg
     4981 cgtaatctca gcgttgaaca gctcacgcag ctgatcgcaa aatacagcca acaaccgctg
     5041 gtgaaatata tcggccagcc ggtcgtcaac attgtcgaac tcaatctggc gctggataag
     5101 cttgatgaat aacgaaccct tacgtcccga ccccgatcgt ctgctggaac aaactgccgc
     5161 gccgcatcgg gggaagctga aagttttctt cggtgcctgt gcaggcgtcg ggaagacctg
     5221 ggcgatgctg gcagaagccc agcgactgcg ggcgcaaggg ctggatattg tggttggcgt
     5281 ggtagaaacc cacgggcgaa aagataccga cgcaatgctg gaagggctgg ctgttctgcc
     5341 gccaaaacgc ctggcgtacc gtgggcggca catctgcgag tttgacctcg atgccgccct
     5401 cgcccgccgt ccggcgctga tcttaatgga cgaactggcg cacagtaatg cgctaggttc
     5461 tcgtcaccct aaacgctggc aggacatcga agagctgctg gaagcaggca ttgatgtttt
     5521 cactaccgtc aacgttcagc atctggaaag tctgaatgat gtggtcagcg gcgtcaccgg
     5581 aattcaggta cgggaaaccg tgcccgatcc ttttttcgat gccgccgacg acgtggttct
     5641 ggtggacttg cccccggacg atctgcgcca gcggctgaaa gaaggcaaag tctatattgc
     5701 cgggcaggcg gagcgcgcca ttgaacattt tttccgcaaa ggcaatctga tcgccctgcg
     5761 cgaactggca ctgcgccgta ctgccgatcg cgttgatgag caaatgcgcg cctggcgggg
     5821 gcatcctggc gaagagaaag tctggcacac gcgcgacgcg atccttttat gcatcggcca
     5881 taacaccggt agtgagaagc tggtccgcgc ggcggcgcgg ctggcgtcac ggctgggtag
     5941 cgtctggcac gcggtgtatg ttgaaacccc tgccctgcac cgcttaccgg aaaaaaaacg
     6001 tcgggcaatt ctcagcgcct tacgtctggc gcaggagctg ggcgcggaga cggcaacact
     6061 ttctgatcca gcggaagaaa aagcagtagt gcgttatgcc cgtgaacata atctcggcaa
     6121 gattattctc ggtcgcccgg cctcgcgccg ctggtggcgt cgggaaacgt ttgctgaccg
     6181 actggcgcgc atcgcccccg atctcgatca ggtgctggtc gcgcttgatg aaccacccgc
     6241 ccgcacgatt aacaacgcgc cggatagccg ctcttttaaa gacaagtggc gggtacagat
     6301 tcagggatgc gtggttgccg ccgcgttatg cgccgttatc actttaattg ccatgcagtg
     6361 gctgatggcg tttgatgccg ccaacctggt gatgctgtat ctgcttggcg tggtggtggt
     6421 ggcgctattt tatggacgct ggccttcggt ggttgctacc gtcattaatg tggtgagttt
     6481 cgatctcttt tttatcgccc cacgcggcac gctcgccgtc tctgatgtgc aatatctgct
     6541 gaccttcgca gtgatgttaa ccgtcgggct ggtgatcggg aaccttactg ctggcgtgcg
     6601 ttatcaggcg cgggtagccc gttaccgcga gcaacgcaca cggcacttat atgaaatgtc
     6661 gaaagctctg gcggtgggcc gcagtccgca ggacatcgcc gccaccatcg aacaatttat
     6721 tgcctccacg tttcatgccc gcagtcaggt gttgttgccc gatgacaacg gtaaattgca
     6781 gccgttaaca catccgcaag gaatgacgcc atgggacgat accatcgcgc agtggagttt
     6841 tgataaaggc ctgcctgcgg gcgcgggcac cgacacgtta cccggtgtac cgtaccagat
     6901 tttgccgcta aaaagcggcg agaaaaccta cgggctggtg gtggtggagc cggggaatct
     6961 gcgccagttg atgatcccgg aacagcagcg cctgctggag acgtttacgc tgttagtcgc
     7021 caatgccctt gagcggctga cgctaaccgc cagcgaagaa caggcgcgga tggcaagcga
     7081 acgtgaacag atccgcaacg ccctactggc agcgctttcg catgatttac gcacgccgct
     7141 cacggtgctg ttcggtcagg cagaaatctt aacgctcgat ctggcaagcg aaggatcgcc
     7201 ccacgcccgc caggccagcg agattcgtca gcatgtgctg aacactaccc gactggtgaa
     7261 taatctactg gatatggcgc gaattcagtc cggcggcttt aatttgaaga aagagtggtt
     7321 aacgctggaa gaagtggtcg gtagcgcgct gcaaatgctg gaaccgggtt tatcgtcgcc
     7381 catcaatctt tctctgccag aaccgctgac cttaatccac gttgacgggc cactctttga
     7441 acgggtgctg attaatctgc tggagaacgc ggtgaaatat gcgggtgcgc aggccgaaat
     7501 tggtatcgat gcccacgttg agggcgaaaa tctacaactg gatgtctggg ataacggccc
     7561 cggtcttccg ccaggccagg agcagacgat atttgataag tttgctcgcg ggaataaaga
     7621 gtcggcagta ccgggggtag ggcttggact ggcaatttgt cgggcgatag tggatgtaca
     7681 cgggggcact attaccgcgt tcaaccgacc ggaaggtggt gcctgttttc gtgttacact
     7741 tccccagcaa actgcccctg aacttgaaga atttcatgag gatatgtgac aaacgttctg
     7801 attgttgaag atgaacaggc tattcgtcgc tttctgcgca cggcgctgga gggcgacggg
     7861 atgcgcgtct atgaggccga aacgctgcaa cgcggcttgc tggaagcggc tacccgtaag
     7921 ccagatttga ttattctcga tctcggcctg cccgatggtg atgggattga gtttatccgc
     7981 gacctgcgcc agtggagcgc ggtgccggtg attgtgcttt ccgcacgcag cgaagagagc
     8041 gacaaaatcg ccgcgctgga tgccggagcg gatgattatc tgagtaagcc gtttggcatt
     8101 ggcgaattgc aggcccgtct gcgcgtcgct ttacgccgcc actccgctac cgccgcgccc
     8161 gatccgctgg tgaaattttc cgatgttacc gtcgatttag ccgcccgcgt gattcaccgg
     8221 ggtgaggaag aggtgcatct cacaccaatt gagttccacc tgctggcggt gctgctcaac
     8281 aatgccggaa aagtactcac ccagcgccag ctccttaacc aggtgtgggg gccaaacgcg
     8341 gtcgaacaca gtcactattt gcgtatttat atgggacatc tgcgacaaaa actggaacag
     8401 gatcccgccc gcccacgcca tttcattact gaaaccggta ttggctatcg gtttatgctt
     8461 tgaatattaa ttttaataca gcctgccttt tattaattaa agccgtaata ataaatacgg
     8521 ctttttatct taaacaacac acaaaaataa caattcaata ttttatatta ctgagtaaaa
     8581 agctcatcat taaataaatt aagattgatc attttttatt gatcaccttc acagttcaac
     8641 cgtatttcct ggatagaata tcttcacctt cattcacatc aggaaaggta aattaaatgg
     8701 aaaataacag ccgcactatg ccccatataa ggcggacaac tcatattatg aagtttgctc
     8761 atcgcaatag cttcgacttt cacttcttca atgcccgtta gtctaccgac taagggcact
     8821 tcagcgtaca ggtcttcctg actctctgta ttacaggcat atgcctgtat tccgcagtgc
     8881 tcattctctg ttaacccttg tattatcagc caccggactg gtaagggttt ctgcattctg
     8941 aaaaaagcaa tctacctgat ttatttatca gcggggtaac tttgcttttt tccggcacga
     9001 tcgatttctc attcgagaaa ttgaggacct gctattacct aaaataaaga gatgaaaaat
     9061 gtcaaaatta aaaattgcgg ttagtgattc ttgcccggac tgttttacca cgcagcgaga
     9121 atgtatctac attaatgaaa gtcgtaatat cgatgtggcg gcaatcgttt tatcgctcaa
     9181 cgatgttaca tgcggaaaac tcgatgaaat cgatgccacg ggttatggca tcccggtatt
     9241 tattgctact gaaaatcaag aacgtgtacc cgcagagtat ttgccctgta tttcgggtgt
     9301 ctttgagaat tgcgaatcgc gacgagaatt ttatggtcgt cagttagaaa ccgctgccag
     9361 ccattatgaa actcaactgc gcccaccttt cttccgcgca ctggtcgatt atgtcaatca
     9421 aggtaacagc gcgtttgatt gccctggtca tcagggcggc gaatttttcc gtcgccatcc
     9481 ggcggggaat cagtttgtgg aatactttgg tgaggcgctg ttccgttccg acttgtgcaa
     9541 cgcagacgta gcaatgggtg atctgctgat tcacgaaggc gcgccatgca ttgcacagca
     9601 acatgcggca aaagtgttca atgccgataa aacatacttc gttctaaatg gcacttcatc
     9661 ttctaacaaa gtggttttaa acgccctgct gacaccgggt gatctggtgc tgtttgaccg
     9721 caataaccac aaatctaacc accacggagc gttgctacag gctggtgcaa caccggttta
     9781 tctggaaacc gcacgtaacc cgtatggctt tatcggtggc attgatgcgc actgttttga
     9841 agaaagttac ctgcgtgagc tgatcgcgga agtcgcaccg cagcggacaa aagaggctcg
     9901 tcctttccgc ctcgccgtta ttcagctagg cacctacgac ggtacgattt ataacgcccg
     9961 ccaggtggtg gataaaattg gtcatctgtg tgactacatt ctgtttgact ccgcatgggt
    10021 cggctatgag caatttatcc cgatgatggc tgactgttca ccgctgttgc tggatcttaa
    10081 tgagaacgat ccgggcattc tggttacgca atctgtgcat aaacagcagg ctggtttttc
    10141 tcaaacttca caaatccata aaaaagacag ccacatcaaa gggcaacagc gttatgtacc
    10201 gcacaaacgc atgaacaacg cctttatgat gcatgcctcc accagcccgt tctatccgct
    10261 gtttgccgca ctggatatca acgccaaaat gcatgaaggt gtcagcggtc gtaatatgtg
    10321 gatggattgt gtggtaaatg gcattaatgc ccgcaagctg atcctcgata actgtcagca
    10381 tattcgtccg ttcgtacctg aactagtgga tggtaaaccc tggcagtcgt atgaaacagc
    10441 gcaaattgcg gttgatctgc gcttcttcca gtttgtacca ggggaacact ggcactcttt
    10501 tgaaggctat gcagagaatc aatactttgt cgatccatgc aaactgttgc tgacaacccc
    10561 aggttttgat gcacgtaacg gcgaatatga agcgttcggt gtacccgcga cgattcttgc
    10621 taacttcctg cgcgaaaatg gcgtagtgcc ggaaaaatgc gatcttaact ccatcctctt
    10681 cctgctgact ccggcagaag atatggccaa acttcagcaa cttgttgccc tgctggtacg
    10741 cttcgaaaaa ctgcttgagt ccgacgcgcc attagcagaa gtgctgcctt ccatctacaa
    10801 acagcatgaa gagcgctacg ccggttatac ccttcgtcag ttatgccagg aaatgcatga
    10861 tttgtatgcc cgtcacaacg tgaaacaacc gcaaaaagag atgttccgta aggaacactt
    10921 cccacgcgta agcatgaatc cacaagaagc caactacgcc tattcacgcg gtgaagtgga
    10981 gctggttcgt ctgccggatg ccgaaggccg tatcgctgcc gaaggtgcgc ttccttatcc
    11041 tccgggtgtg ctgtgtgttg ttccgggtga aatctggggt ggtgctgttt tgcgttactt
    11101 cagcgctctg gaagaaggga tcaacctgct gccaggtttt gcaccggagc tgcagggtgt
    11161 ctatatcgaa gaacatgatg gtcgtaagca agtttggtgc tatgtcatca agcctcgtga
    11221 tgcgcaaagc accctgttga aaggggaaaa attatgagtc aggctaaatc gaacaaaatg
    11281 ggcgtcgttc agttaaccat actgacgatg gtcaacatga tgggctccgg tatcatcatg
    11341 ctgccgacaa agcttgccga agttgggaca atctcaatta tctcctggct ggtgacagcc
    11401 gtaggctcaa tggcactggc atgggcattc gcaaaatgcg gtatgttcag ccgtaaatca
    11461 ggcggtatgg gcggttatgc ggagtatgct ttcggtaagt ccggcaattt tatggcgaac
    11521 tacacctacg gtgtctcgct gctgattgct aacgtcgcga ttgctatttc ggcggttggt
    11581 tacggcaccg aactgctcgg cgcgagtttg tcgccagtgc agattggtct tgcgaccatc
    11641 ggagtgctgt ggatttgtac cgtggctaac tttggtggtg cgcgcattac cgggcaaatc
    11701 agtagcatta ctgtgtgggg agtcattatt ccggtcgtcg gtctgtgcat tattggctgg
    11761 ttctggttta gtccgacgct gtacgctaac tcatggaacc cgcaccatgt gccgttcttt
    11821 agcgctgtag gttcttccat cgccatgacg ttgtgggctt tcctcggtct ggagtcagcc
    11881 tgtgccaacg ccgaagtagt ggaaaacccg gaacgtaacg tgccgattgc agttcttggc
    11941 ggtactttag gtgcggcggt gatttatatc gtctccacca acgtgattgc cgggattgtg
    12001 cctaatatgg agctggcaaa ttcaacggca ccatttggcc tggctttcgc acagatgttc
    12061 acaccagaag tgggtaaagt cattatggcg ctgatggtga tgtcctgctg cggttcactg
    12121 cttggctggc ggttcactgc ttggctggca gttcaccatt gcccaggtgt ttaaatcttc
    12181 atctgatgaa ggctacttcc ctaaaatttt ctcccgtgta accaaagtgg atgcaccggt
    12241 gcagggaatg ttgaccattg tgattattca gagtggattg gcactgatga ccattagccc
    12301 gtcactgaac agccagttca acgtgctggt taacctggcc gtggtgacca atatcattcc
    12361 gtatattctg tcaatggcgg cattagtcat tattcagaag gtcgctaatg tgcccccctc
    12421 aaaagcgaaa gtagcaaact ttgttgcctt tgttggtgcg atgtacagtt tctatgcgct
    12481 gtactcatcc ggggaagaag ccatgctgta cggttctatc gtgaccttcc ttggttggac
    12541 actgtatggt ctggtatcac catgctttga actgaaaaat aaacacggtt aataaaacaa
    12601 agtaaaaaag ggcgattgaa tgatcgccct ttctgtttgt tggcaaatag ttcgttattt
    12661 atgccgcatc cggcagatgt agggtctaaa cgcgatcgaa cacagcaact atttgcgtaa
    12721 ttatatgggg catctgcgac aaaaactgga acaggatccg gcccggcctc gccattttat
    12781 tactgaaacc ggtattgggt atcggtttat gctttgaaaa aagtggcaat gtatggataa
    12841 agtcattttt tattcaaata taaggaactt aatatttaaa aaatgttcca tacaattcct
    12901 catcataaat gacaccgtag cacacaagga gcaagtagcg atgcgtgaaa tgaatcagtt
    12961 agtaaatact gaagattcag cctggccaat aatccagaac tggttaaaag acgccacaaa
    13021 ccataccgaa ctcttaccgg ttaataaaaa tttagccgaa accgcacttt atcaattaca
    13081 ggtgacaaca aaatcaccga tgggtgcgct tgtctatggc tccggaggtc tgctgattga
    13141 taatggttgg ttacgcatag caggatctgg tcacccccgg ttgccacgag atccagtaag
    13201 ttggacacaa cgccctgaat tcgcaggcgt gcgggcttta cccatcgctg acgatgtcgc
    13261 agggggaatt tttgctctta atggtggcga tcttggggaa gatactggct gcgtttatta
    13321 ttttgcgcca gatacgctga attgggaaag tctggaagtt ggatattctg agtttcttca
    13381 gtgggcatta tccggtgatt tagatacctt ctatgaaaat gtacgatggc agcaatggcg
    13441 agaagacgta ataaaattat cggcaacgga agccttcacg ttctaccctt tcttatgggt
    13501 acaaagtgaa gaagcaagaa caagaaaagt tatttcgctt actgaactct gggaaatgca
    13561 gtatcaaatg aaagaaacat tcacgcaata agacatgttc aggtccgggt ttcattcccg
    13621 gactcactat tttaatgtgt atttatcgct ttcaattctt gctggcaatt ttctgactgg
    13681 cagcgtcgta actcaataat cccgacatgc atcatcgagc caaaaaatcc gctttcgctg
    13741 acataatcct cattgactat cggtcgagtg ccgggcttgc cctggcaaac ccgcataaaa
    13801 aatgaggtgt agcattgcca accgggattt aaaccgacct tttcttgtgc tgacatatta
    13861 tgaagataag taagttcttt ttcgttcccg cctgacaact gccagcggcg ggtattatca
    13921 ggtaagttat caccacggca atttgtctta caccgggaag gtgcaatatt taccgcaatg
    13981 ctacccgtta atcttctggt tttatcttta ggggtcagta accagtcgcc agctaatgat
    14041 gattgttcag gttgggcgca tgcagtcagc agtaatgtgg cggtaattag tgacactatg
    14101 acgaccagac tcctgttggt cttcattggg atttccttga gctactcagt ttgttgacaa
    14161 agtgttcgtt gtttttgccg gatgcggcgt gaacgcctta tccggcctac aaaatctcgt
    14221 aaattcaata tattgcacca tcctcgtagg cctgataagc gtagcgcatc aggcaattct
    14281 gtgtttgtca tacgtaaaaa agggcgatct tccgaccgcc ctttttctta tttaatgtgt
    14341 ttacgcgttt ttcagaactt cgctaacaat ctcaaccgct tctttctcaa tctgcttgcg
    14401 atgttcttca ccgaggaagc tttcgcagta gatcttatat gcgtcttccg tgcctgacgg
    14461 acgcgcggcg aaccagccgt tgtcagtcat cactttcaga ccgccgatag aagcaccatt
    14521 gcccggtgcc gccgtcaggc gcgcggtgat cgggtcgcct gccagggtgc tggcgctcac
    14581 catttccgga gacagcttag acagcgccgc tttttgtgcg gaagtcgcag ctgcctgcaa
    14641 acggttgtag ctcggcgcac caaagcgttt tgccagttcg ttgtagtgtt cctgcgggtt
    14701 cttaccggtg acagcggtga tttccgccgc cagcagacac atgatgatgc cgtctttgtc
    14761 ggtggaccac ggcgtgccgt cgaaacgcag gaaggaagcc cctgcgctct cttcgccgcc
    14821 aaagccgaag ctgccgtcga acagaccatc aacaaaccat ttgaaaccta ccgggacttc
    14881 taccagcttg cggcccaagt cattgaccac acggtcgatc atcgcagaag aaaccagcgt
    14941 tttaccgaca gcaacatctt tgccccactg cggacgatgc tggaacaggt agttgatcgc
    15001 caccgccagg tagtggttcg gattcatcaa acctgccgga gtgacgatac cgtgacggtc
    15061 ataatccggg tcgttagcaa acgccagatc gaacttatca cgcagtgcca gcaggcccgc
    15121 catcgcacac tcggaggagc agtccatacg gatcgcgccg tctttatcaa ggtgcataaa
    15181 gcggaaggtt tgatcgacct gatcgttaac gatggtcagg ttgaggttgt aatactcgcc
    15241 aatacgcttc cagtattcga taccggaacc gcccagcgga tcaacgccca gcgtcaggcc
    15301 cgctttctga atcgccgcca tatcaacgat atcggccaga ccttccacaa acggctgcac
    15361 cagatcctgc tctttcacat gaccggatgc catcgcttcg tcgagggaga tacgcttcac
    15421 gcctttcagg ccatcggcca gcagtgcgtt ggccctgtct tccaccactt tggtgacgtt
    15481 ggtatcagcc gggccaccat ttggcggatt gtacttgata ccaccatctt ccggcgggtt
    15541 atgggacggt gtaatcacga taccgtctgc cagcggacca ccttttttat tgtgaaccag
    15601 gatggcattg gaaacggcag gcgttggagt gaagccattg ttttcctgca caatgacatc
    15661 aacgccgttc gctgccagca cttccagtac ggaaatgaac gcaggctcgg acagggcgtg
    15721 agtatcttta cccacatagc aagggccagt gatgccgttt ttcgcacgtt cttcagcaat
    15781 tgcctgagcg atcgccagaa tgtgcggctc gttaaagctg tggcgcgctg cactgccacg
    15841 gtgaccggaa gtaccgaatt tcaccgcgtg ctccgcattc cctgcttctg gtttcagtac
    15901 ataatattgc gccgtcagtt gggcgacgtt aatcaaatca ctctgttgtg caggttggcc
    15961 tgcacgattg tggattgcca ttgctttgtc ctttgtctgc aacgttttag atagttccgc
    16021 aaaccttctc aatcaattcc gccgggaatt gcatcgactg catgatgtgt tcgatcatgc
    16081 tgcatttacg gccggtgttg gtgttggtga tcacccaata cggcgtgcct ggcacatgtt
    16141 tcggcttggt ctgattacca tttttcagca gcgtttgttc atctgccgca aagtaaacgc
    16201 gtgtacgacc gtgcaacgat tccgttgctt cggcaaacgc ctgggcgtca agagaatata
    16261 gtgtagacaa cagcagcata aagcgattga ccgctcgctt ttgctctgcg tattcgtcag
    16321 aaagcagaag ttcacgcatt gcgcgaacct tgtctttaat cgttttgacc ggcttcgctt
    16381 cggcgatagc aggtgacgca acgcgaacct ctttcgtcac cggagcagca ggctgtgatg
    16441 cggcggaaaa tttcaacata cgccgtaaaa tgtcggatgc gctctcgccg atatgcttag
    16501 tgtggctggc aatatagctg tagagttcat catcaacttc aatcgttttc atcttaatcc
    16561 agtgcagtgt cttagctgaa tacaagtcgc caagagtata tgaataaatc ccggcagcgg
    16621 atagcgtcaa gcctggcttg cagaaaaact cggaataaac cttatttgtt gcagccctgt
    16681 ggcacaatgg tcaacataat accctaaccc gacaacgcga aaaaaagaac tttgccatga
    16741 aattgaatat ccgcgcgcaa actgcacaaa accagcacaa taattctccc atcgttcttg
    16801 tccatggtct gtttggtagc ctcgacaacc ttggcgtact ggctcgcgat ctggtaaacg
    16861 atcacaatat catccaggtt gatatgcgta accacggtct ttcaccgaga gatccggtaa
    16921 tgaattaccc ggcgatggcg caggatcttg ttgatactct ggatgcacag cagatcgaca
    16981 aagcaacatt tatcggtcac tccatgggcg gtaaagcggt aatggcactt acggcactgg
    17041 cccgcgatcg catcgataaa ctggtggcga tcgatatcgc accggtcgac tatcacgtac
    17101 gccgtcatga tgagattttc gcggctatca acgcggtcag tgaatcggac gcacaaactc
    17161 gccagcaagc agcagcaata atgcgccagc atcttaatga agaaggggtg attcagtttc
    17221 tgttgaaatc ttttgttgac ggggagtggc gctttaacgt gccggtattg tgggatcagt
    17281 atccgcatat tgtgggttgg gagaaaatcc cggcatggga tcaccctgcc ctgtttatcc
    17341 ctagcggcaa ttctccgtat gttagcgagc agtaccgtga tgatttactg gcacaatttc
    17401 cacaggcacg ggcgcatgtg attgcaggcg cgggtcactg ggtccatgct gaaaaaccgg
    17461 atgcggtatt acgcgctatc cgtcgctatc tcaatgatta acgcaactga ttaaaaaccc
    17521 agcgtccgcg tcgctttccg cgcgtgggcg ttggcgtgac tcatcgcgct gatgtattat
    17581 ggcgcgctat ccatccgggc agaggcctgg ctgattgttt cccccgaagt caccaagatc
    17641 atggccaaag aacaaacgga ccgtacgaca ttagatctgt tcgcgcacga gcgtcgaccg
    17701 ggacgaccga aaactaatcc gctttcgcgc gatgaacagc tgcgtattaa taaacgcaac
    17761 cagctaaaac gcgacaaagt acgtggcctt aagcgtgtcg aactgaagct gaacgcggaa
    17821 gctgtcgagg cgctgaacga gctggcggag tcgcgcaata tgagccgtag cgaactgatc
    17881 gaagagatgt taatgcagca actggcggcg ctgcgtagtc agggcatcgt ttaaatttcc
    17941 actttcatgt agcacagtgt gcagtcctgc tcgtttgctg attccgaaag actgcctgtt
    18001 ctgctatgat tgcctttatc cgtgggcaat tttccacccc catttcaata agtttcaaga
    18061 ggttatttca ctcatggcta tcactggcat ctttttcggc agcgacaccg gtaataccga
    18121 aaatatcgca aaaatgattc aaaaacagct tggtaaagac gttgccgatg tccatgacat
    18181 tgcaaaaagc agcaaagaag atctggaagc ttatgacatt ctgctgctgg gcatcccaac
    18241 ctggtattat ggcgaagcgc agtgtgactg ggatgacttc ttcccgactc tcgaagagat
    18301 tgatttcaac ggcaaactgg ttgcgctgtt tggttgtggt gaccaggaag attacgccga
    18361 atatttctgc gacgcattgg gcaccatccg cgacatcatt gaaccgcgcg gtgcaacgat
    18421 cgttggtcac tggccaactg cgggctatca tttcgaagca tcaaaaggtc tggctgatga
    18481 cgaccacttt gtcggtctgg ctatcgacga agaccgtcag ccggaactga ccgctgaacg
    18541 tgtagaaaaa tgggttaaac agatttctga agagttgcat ctcgacgaaa ttctcaatgc
    18601 ctgatgtgat gcggcgtaga ctcatgtcta cgccgtatta atagataatg ccaatcaaaa
    18661 taattgctac aaatttgtaa cttttgctgt tgtacctgta caatgtcccg gtgttcaagt
    18721 ggccttgccg ttgtaaatgt aagctgtgcc acgtttttat taacaatatt tgccagggac
    18781 ttgtggtttt catttaggcg tggcaattct ataatgatac gcattatctc aagagcaaat
    18841 tctgtcactt cttctaatga agtgaaccgc ttagtaacag gacagattcc gcatgactga
    18901 taacaatacc gccctaaaga aagctggcct gaaagtaacg cttcctcgtt taaaaatcct
    18961 ggaagttctt caggagccgg acaaccatca cgtcagtgcg gaagatttat acaaacgtct
    19021 gatcgatatg ggtgaagaaa ttggtctggc tacggtatat cgcgtactga accagtttga
    19081 cgacgctggt atcgtcaccc gccacaattt tgaaggcggt aaatccgtat ttgaactgac
    19141 acagcaacat caccacgatc acctgatctg cctcgactgc ggcaaggtta tcgaatttag
    19201 tgatgattcc atcgaagcgc gtcagcgtga aattgccgca aaacatggca ttcgcctgac
    19261 taaccacagt ctctatcttt acggtcactg tgccgaaggc gattgccgcg aagatgaaca
    19321 tgcgcacgaa ggcaaataag ccagcctgaa tgagaaaaag ccaacctgcg ggttggcttt
    19381 tttatgcaag ggaaataaga aaagcgagag ttacagctct cacttatttg ttattactgc
    19441 gaatttcctg ccaaacttta tcacaatcgg ctttcaccgc ctgatcattt ccggtttgcg
    19501 ttgcacgcag acactgctga taatccagta cgcggacact ttcctggtcg gcaaaatgct
    19561 gatgttgttt ctctttcttc agcacgttta acacgctctg gcaggcttca attttttctg
    19621 gcgaaccttg tgcggtgttg atacaggcgc tgtatgcctc tttcagacga ctgtcttcct
    19681 gtggcgcggt tgattgcgca caagctacca gccccgatgc cattatggcg atgagaatca
    19741 gttttttcat agcaaattcc tcaaacgtgc ggcaggcaca aaacctgccg cgtcgggcat
    19801 cagaagatgg tgaatggtgc gattaccata aatttcacgt cacgctcatc ctggaagatg
    19861 ttgccgtaac caccgcccca gcttgggatg tcggagtggt tgtcgtattc ggtgaagtgc
    19921 agtttgaaca tcgtgccttt ggcgcgaccg tcctgaatgg tgtagaccgc atccaggctg
    19981 tatgcagact cttcaatagt ccggtttttg tcgtagtacg catccggatt gctctgccag
    20041 gtcgcaggtt tagcatccca tgcgtaaacg taggaagcgc cgatggcgaa gcctggaaga
    20101 ttccagtttt tcaggtcata catcgcaccg aagaagaccg ctttttcgcc gttagcgttg
    20161 aagtcggaac ggttatccca ccagatatcc aggcggccgt tggaggaagc gtaggctgga
    20221 gtcatacgtt gcaggaagta tccctgctga ccgtcagcct taacccaggt gccttcgagg
    20281 cgcaaatcca ctacgtcagc cgcccggtaa ccaaaggtca acgcttgcag ccaggcggtg
    20341 ccgtcataaa ggtcgttgac gctgcgatcg tcaactttat cgcgcgtacc atagaactgg
    20401 tagctggtgg ttaacgggct accggcgata tcaaatttgt agctggcttt ggcaaaatat
    20461 tgatcgatat acccttccgc ctgaccaaat gccgcttcca gtacgaagtt atttttgaag
    20521 tcgtatttcg ccccaaggga gtgcagataa tcaactttgg tggttttatc gttctgataa
    20581 aactcatcca tttccagatg ccacggcgct ttgtattcgt tggtccacat gtaggagaaa
    20641 ctcaacgcac cagcatcgcc gtaatcaaaa ttcgccccgg cttccgcccc ctgataagta
    20701 cctggcataa agctccagtg cggcgctaac agcgtttgac cagttggctg aatgtaacct
    20761 gccctcgccc aaaccggacc gtatttaaat ttggccgcag ctttatacag gcttataccg
    20821 cttttgtcgc cggaccagtc ttcgtcatag gctttattac tttttgaaaa cgcgatttcg
    20881 ttcgggtggg agctgtcgcc gttttccgcc atttcaatcg ccgtaaacac agcaatatca
    20941 aggccgaaca tatcagcagc ataaccggac tgaaaatcga ggttggcatt ccaggtggag
    21001 tgagaaaggt tggttttgta tttgtcgccg tcggtaacat ctttacggtc gcgttcacgc
    21061 tgccagtaat atataccgcc ggttaaggtt gaatcgtcga tgaatccttc ggcgcgagcc
    21121 tccggcattg ccataaagcc cgacattgct gtaacaccgg cgatagccag cgccagcgta
    21181 ctacgtttgc cactaaacgt acgcatgggt taatcctctt tgacgtataa attgctgcac
    21241 caaaggtgaa cagcgaaaaa aataaaaatt aaaaaagtag cattgagaaa agtctcgctg
    21301 actacaggaa tagactattt ttcgcgacgc gaattatcaa tctctttctg taaccagaat
    21361 gtaagaacat gagcaaccgc acatattttg atgatttttg ttacaaggct taagtttgcg
    21421 gttgaaaggc ttgcagaaga ataaaagcgt aaatttccag caagatgaaa gcggttacat
    21481 tttatttaat tatggtttgt gattttaaat ttattttatg gataaattgc gaagcggaat
    21541 taattcgcga agaaaagcag aaaaaacgcc gcagagtgcg gcgtttggga ttgtttgcta
    21601 tttcttgccg gatgcgacgt aaatgcctca cccggcctgg tagaacttaa aattactcgc
    21661 ctactttcgc ccaggtatca cgcagcccaa cggtgcggtt aaataccggt ttttccgctg
    21721 tggaatggcg gctgtcgagg cagaagtaac cttcacgctc aaactggaat gctttacccg
    21781 caaccgcatc tttcagcgac ggttcagcaa agccctgttt gatcaccagc gattccgggt
    21841 taatcaccga caggaaatca tccgcagcac ctgggttagg cacgctgaac agacggtcgt
    21901 acagacggat ttcaaccggc agcgcatgtg ccgcgctcac ccagtgaata acacctttga
    21961 ctttacgacc atctgccgga tctttgctta aggtgtcggc gtcataagta cagaagatgg
    22021 tggtgatatt gccttcggca tctttctcca cgcgttctgc cttaatgacg taagcattac
    22081 gcagacgcac ttctttaccc agcaccagac gtttgtactg cttgttagct tcttcgcgga
    22141 aatcggcgcg atcgatccaa atctcactgc taaacggcac ctggcggcta cccatttccg
    22201 gtttgttcgg atggttcggc atggtaacca tttcgccttc gccctgatag ttttcgataa
    22261 ccagtttcac cggatcgata accgccattg cgcgcggggc gttttcgttg agatcttcac
    22321 ggatgcagga ttccagcgac gccatctcaa tggtgttgtc ctgcctggtc acgccgatgc
    22381 gtttgcagaa ctcacgaata gaagcagcag tgtaaccacg acgacgcaga ccggaaatgg
    22441 tcggcatacg cgggtcatcc cagccttcaa cgtgcttgtc ggtcaccagc aggttcagct
    22501 tacgcttgga catcacagtg tattccagat tcaggcgcga gaattcgtac tggcgcgggt
    22561 gaacaggaat ggtgatgttg tccagcaccc agtcgtacag gcgacggttg tcctggaact
    22621 caagcgtaca cagagagtgc gtaatacctt ccagggcatc gctgatgcag tgggtgaagt
    22681 cgtacatcgg gtagatgcac cacttgttgc cagtctggtg gtgttcagca aatttaatgc
    22741 ggtacagcac cggatcgcgc atcacgataa acggtgaagc catgtcgatt ttcgcacgca
    22801 ggcaggcttt accttcttca aaaccaccgg cacgcatttt ttcgaacagc gccaggttct
    22861 cttcaacgct gcggtcgcgg tacgggctgt ttttacccgg ttgcgtcagg gtgccgcggt
    22921 attcgcggat ctgttccggc gtcagttcat caacgtacgc caggccttta ttgatcagtt
    22981 cgatcgcata ggcgtggagc tgatcaaaat aatcggagga gtaacggacg ttaccagacc
    23041 agtgaaaacc taaccactct acgtcgtttt tgatcgactc aacatactcg atatcttctt
    23101 ttaccgggtt agtgtcgtcg aaacgcaggt tgcactggcc tttatagtcc tgggcgatcc
    23161 cgaagttcag gcagatagat ttcgcatggc caatatgcag atagccattc ggctccggcg
    23221 ggaaacgggt gtgtactgtg gtgtgcttac cactggccag atcttcatcg atgatctgac
    23281 ggataaagtt agtcgggcgg gcttctgcct cactcatcgt ggattcctca aagcgtaaac
    23341 aacgtataac ggcgtatgat cttataagcg gaacaggctg acaactgtta gttttttaaa
    23401 attgataatc taacaaggat tatggggatg attgatgaaa aaaaaagcgg cagagaagat
    23461 ctccaccgct tgtcattgtt ggatgcgacg ctcaagcgtc gcatcaggca taaagcagat
    23521 tactttttga tttcatacag cggtgtttga cccgccacaa catggccctg agctttaatg
    23581 atcaagccac tgaaatcgtc gatattgctg caaaccaccg ggctaatcat cgagcgggcg
    23641 ttagcgttca ggtaatccag atccatttcc agaatcggtt gccctgcgct tacctgcgca
    23701 ccctcttcca ccagacgttt aaagccttta ccttccagcg ctacggtgtc gatacccata
    23761 tggacgacga tctccgcgcc tttttcggtt tccaggcaga acgcgtggtt ggtgttgaag
    23821 attttcacga ttgtccctgc ggctggtgat acgacgattt tatctgtcgg tttcaccgcc
    23881 acaccgtcac ccaccgcttt gctggcgaat gcttcgtcag gaacctgatc cagtgccacg
    23941 acatcaccgg taatcggcga taccagctcc gcgatagata ccgcgtttgg tacagcctgc
    24001 ggttttgcta caggcgcggc agttgacgga gttgcttcag ctgacgcagc ggctaccgga
    24061 ccacgggcaa cgactttctt catcgcatcg ccgatggatt ctgctttcgc gccaacaatc
    24121 acctgaatag tctgtttgtt cagtttcact acaccagaag cacccagacg tttacacatc
    24181 gtatcgttga cgcgggcaga gtcagccacg gtcaggcgca gacgggtgat acaggcgtca
    24241 attgctttca ggttgtcagt gccgccaacc gcagcaatat agttggtcgc cagttgattg
    24301 aggccttctt cagtgttgct gttggcttct tcagtaacga tctcatcttc tttatcttca
    24361 cgacccggcg ttttcaggtt gaacatgcgg ataaccaaac tgaacaccac gaagtagata
    24421 gcgaagaaga caacacccat caccagcagc atccagacgt tctggctggc ggccggcagg
    24481 ttatacatca acgcgtagtc gatagccccc gcagagaaag agaagccagc atggataccc
    24541 agcagtgttg ccacaaacag gctgataccg gtcagcagtg cgtgcaggag gtacagcagc
    24601 ggtgcaagga acatgaacag gaattccagc ggctcagtca caccggtcag gaacgcagta
    24661 acagcaacag aaagcagcat cccgccaacc atcggacgac gctctttcgg tgctgcgaag
    24721 tacatcgcca gcgccgcacc cggcagaccg aacatcataa tcgggaagaa gccggacatg
    24781 aacatccccg cggtgccgtc accggcatag aagcggttga tatcaccgtg gaaaaccgta
    24841 cccgccgcgt tggtgaattc accaatctgg aaccaggcga tggtgttcag cacctgatgc
    24901 agaccggttg ggatcagcag acggttgatg aaaccaaaga taccggaacc cagcgcgccc
    24961 gcagaaacga tccactcgcc tcctgcatgg atagcgtgct gtaccggcgg ccagacgtaa
    25021 ccaaaaatgg ccgccagcac caggcagaag aagccggtgg caatcggcac aaagcgtttg
    25081 ccgccgaaga agctcaggaa gtccggcagt ttaatatcgg accaacggtt ataggctgcg
    25141 ccaccaacca gaccggtaat gatacccgcc agtacaccca tgtttatttc tgggttgatg
    25201 gtcaccatcg ctttggttaa cacaaagtaa cctaccgcac ccgccagcgc cgccgcacct
    25261 gcgctgtctt tcgaccagct ggatgccaca ccgatggcga agattaatgc gaggttatca
    25321 aaaatcgcac cgcccgcctg ggcaataaac gcaacgttaa gtaaatctgg ctgaccgaat
    25381 cgcagcaaca gtgccgccac cggcagcacc gcgataggga gctgtaacgc cctaccgagt
    25441 cgctggaaaa aacctaaaat attcatctta ttccccctac gagaacccta tttggctcgt
    25501 ttaaagccgt atttttattt tgctgcaaat tgtactgccg atgttctgta atcagattgt
    25561 tagatcatct gctacagagt gtgtgaaaat ttaattcgta tcgcaaatta aacgcgtgtc
    25621 ttttgtgagt tttgtcacca aatatcgtta tcatcactcc cttttactgg ctaaaccaga
    25681 aaacttattt tatcattcaa aaaatcaggt cggattgacg cctgtctgcg caaatccaag
    25741 ttacgcttaa agatgcctaa tccgccaacg gcttacattt tacttattga ggtgaataat
    25801 gagactgatc cccctgacta ccgctgaaca ggtcggcaaa tgggctgctc gccatatcgt
    25861 caatcgtatc aatgcgttca aaccgactgc cgatcgtccg tttgttctgg gcctgccaac
    25921 tggcggcacg ccgatgacca cctataaagc gttagtcgaa atgcataaag caggccaggt
    25981 cagctttaag cacgttgtca ccttcaacat ggacgaatat gtcggtctgc cgaaagagca
    26041 tccggaaagc tactacagct ttatgcaccg taatttcttc gatcacgttg atattccagc
    26101 agaaaacatc aaccttctca acggcaacgc cccggatatc gacgccgaat gccgccagta
    26161 tgaagaaaaa atccgttctt acggaaaaat tcatctgttt atgggcggtg taggtaacga
    26221 cggccatatt gcatttaacg aaccggcgtc ttctctggct tctcgtactc gtatcaaaac
    26281 cctgactcat gacactcgcg tcgcgaactc tcgtttcttt gataacgatg tcaatcaggt
    26341 gccaaaatat gccctgactg tcggtgttgg tacattgctg gatgccgaag aagtgatgat
    26401 tctggtgctg ggtagccaga aagcactggc actgcaggct gcagttgaag gttgcgtgaa
    26461 ccacatgtgg accatcagct gtctgcaact gcatccaaaa gcgatcatgg tgtgcgatga
    26521 accttccacc atggagctga aagttaagac tttaagatat ttcaatgaat tagaagcaga
    26581 aaatatcaaa ggtctgtaat tgttatccct gccctggctc cttgctcagg gcaatatttt
    26641 ttaaaatcgg gggtcagaat gtatgcatta acccagggcc ggatctttac cggccacgaa
    26701 tttcttgatg accacgcggt tgttatcgct gatggcctga ttaaaagcgt ctgtccggta
    26761 gcggaactgc cgccagagat cgaacaacgt tcactgaacg gggccattct ctcccccggt
    26821 tttatcgatg tgcagttaaa cggctgcggc ggcgtacagt ttaacgacac cgctgaagcg
    26881 gtcagcgtgg aaacgctgga aatcatgcag aaagccaatg agaaatcagg ctgtactaac
    26941 tatctgccga cgcttatcac caccagcgat gagctgatga aacagggcgt gcgcgttatg
    27001 cgcgagtacc tggcaagaca tccgaatcag gcgttaggtc tgcatctgga aggtccgtgg
    27061 ctgaatctgg taaaaaaagg cacccataat ccgaattttg tgcgtaagcc tgatgccgcg
    27121 ctggtcgatt tcctgtgtga aaacgccgac gtcattacca aagtgaccct ggcaccggaa
    27181 atggttcctg cggaagtcat cagcaaactg gcaaatgccg ggattgtggt ttctgccggt
    27241 cactccaacg cgacgttgaa agaagcgaaa gccggtttcc gcgcggggat tacctttgcc
    27301 acccatctgt acaacgcgat gccgtatatt accggtcgtg aaccgggcct ggcgggcgcg
    27361 atcctcgacg aagctgacat ttattgcggt attatcgctg atggcctgca tgttgattac
    27421 gccaacattc gtaacgctaa acgccttaaa ggcgacaaac tgtgtctggt taccgacgcc
    27481 accgcgccag caggtgccaa cattgaacag ttcatttttg cgggtaaaac aatatactac
    27541 cgtaacggac tttgtgtgga tgagaacggt acgttaagcg gttcatcctt aaccatgatt
    27601 gaaggcgtgc gtaatctggt cgaacattgc ggtatcgcac tggatgaagt gctgcgtatg
    27661 gcgacgctct atccggcgcg tgcgattggc gttgagaaac gtctcggcac actcgccgca
    27721 ggtaaagtag ccaacctgac cgcattcaca cctgatttta aaatcaccaa gaccatcgtt
    27781 aacggtaacg aggtcgtaac tcaataagag aaagtatgac accaggcgga caagctcaga
    27841 taggtaatgt tgatctcgta aaacagctta acagcgcggc ggtttatcgc ctgattgacc
    27901 agtacgggcc aatctcgcgg attcagattg ccgagcaaag ccagcttgcc cccgccagcg
    27961 taaccaaaat tacgcgtcag cttatcgaac gcgggctgat caaagaagtt gatcagcagg
    28021 cctccaccgg gggccgccgc gctatctcca tcgtcaccga aacccgcaat ttccacgcaa
    28081 tcggcgtacg gcttggtcgt cacgacgcca ccatcaccct gtttgatctc agcagcaaag
    28141 tgctggcaga agaacattac ccgctgccgg aacgtaccca gcaaacgctg gaacatgccc
    28201 tgttgaatgc cattgctcag tttattgata gctaccagcg caaactgcgc gagctgatcg
    28261 cgatttcggt gatcctgcca gggcttgttg acccggacag cggcaaaatt cattacatgc
    28321 cgcatattca ggtagaaaac tgggggctgg tagaagctct ggaagaacgt tttaaagtga
    28381 cctgtttcgt tggtcacgat atccgtagtc tggcgctggc ggagcactac ttcggtgcaa
    28441 gtcaggattg cgaagactcc attctggtgc gtgtccatcg cggaaccggg gccgggatta
    28501 tctctaacgg gcgcattttt attggccgca acggtaacgt cggtgaaatt ggccatattc
    28561 aggtcgaacc gctgggtgaa cgctgccact gcggcaactt tggctgcctg gaaactatcg
    28621 ccgccaacgc tgccattgaa caacgggtgt tgaatctgtt aaagcagggc taccagagcc
    28681 gcgtgccgct ggacgactgc accatcaaaa ctatctgcaa agccgcgaac aaaggcgata
    28741 gtctggcgtc ggaagtaatt gagtatgtcg gtcgtcatct gggtaaaacc atcgccattg
    28801 ctatcaactt atttaatccg caaaaaattg ttattgccgg tgaaatcacc gaagccgata
    28861 aagtgctgct ccctgctatt gaaagctgca ttaataccca ggcgctgaag gcgtttcgca
    28921 ctaatctgcc ggtggtacgt tctgagctgg atcaccgctc ggcaatcggc gcttttgcgc
    28981 tggtaaaacg cgccatgctc aacggtattt tgctccagca tttgctggaa aattaatgtg
    29041 cttttatagt ggcgcttatt gttgtcaata ttctgggtag tccatgacca ttaaaaatgt
    29101 aatttgcgat atcgatggcg tgctgatgca cgataacgtc gccgtaccgg gtgcagcgga
    29161 atttttgcac gggattatgg ataaaggcct gccgctggtg ttgctgacca actatccttc
    29221 gcagactggg caagatctgg cgaaccgctt tgccaccgca ggtgtcgatg tacctgacag
    29281 cgtgttttat acctctgcga tggcgactgc cgatttcctg cgtcgccagg aaggcaagaa
    29341 agcgtatgtg gtgggcgaag gcgcactgat tcatgaactg tacaaagccg gtttcactat
    29401 taccgatgtg aaccctgatt tcgtgattgt tggcgaaacg agttcctaca actgggacat
    29461 gatgcataaa gcagcctatt tcgtcgctaa cggtgcacgt tttatcgcca ccaatccgga
    29521 cacccacggg cgcggttttt atcccgcgtg tggcgcgttg tgtgcaggca tcgaaaaaat
    29581 ctccgggcgt aaaccgttct atgttggtaa accgagtccg tggatcatcc gcgcggcatt
    29641 aaacaaaatg caggcgcatt cggaagaaac ggtgattgtc ggcgataacc tgcgtaccga
    29701 tattctggcg ggcttccagg caggtctgga aacgattctg gtgctttctg gtgtttcatc
    29761 gctcgacgat atcgacagta tgccgttccg cccaagctgg atttacccgt cggtcgctga
    29821 aatcgacgtt atctgaatag caaccacgtc tgcggacgtg gttggctctg atgacaaacg
    29881 ccaaactgcc tgatgcgcta cgcttatcag gcctacgcag ctcctgcaat atattgaatt
    29941 ttcatgcttt tgtaggccgg ataaggcgtt cacgccgcat ccggcatgaa caaattgcac
    30001 tttgtcagca atttggcccc cgtaaaatac aaacattcaa taaaacccgc tgaaaattat
    30061 cgattcatca ataaatatat cctcacacca gacctttttt caccaatcga caatcaccat
    30121 tacgtttttt attttttcac cgccaaatcg cttgcgcaca gtgctgcttt gcggcatttt
    30181 tttaaacaag caaacacaac aagcaacaaa taccagatta acggagaagg ttatgtgttc
    30241 aatttttggc gtattcgata tcaaaacaga cgcagttgag ctgcgtaaga aagcactcga
    30301 gctgtcacgc ctgatgcgtc atcgtggccc ggactggtcc ggtatttatg ccagcgataa
    30361 cgccattctc gctcacgaac gtctgtcaat tgttgacgtt aacgcggggg cgcaacctct
    30421 ctacaaccaa caaaaaaccc acgtactggc ggtaaacggt gaaatctaca accaccaggc
    30481 attgcgcgct gaatatggcg atcgttatca gttccagaca gggtctgact gtgaagtgat
    30541 cctcgcgctg tatcaggaaa aagggccgga atttctcgac gacttgcagg gcatgtttgc
    30601 ctttgccctg tacgacagcg aaaaagatgc ctacctgatt ggtcgcgacc atctggggat
    30661 catcccactg tatatgggct atgacgaaca cggtcagctg tatgtggcct cagaaatgaa
    30721 atcgctggtg ccagtttgcc gcacgattaa agagttcccg gcggggagct atttgtggag
    30781 ccaggacggc gaaatccgtt cttattatca tcgcgactgg ttcgactttg atgcagtgaa
    30841 agataacgtg accgacaaaa acgagctgcg tcaggctctg gaagattccg ttaaaagcca
    30901 tctgatgtct gatgtgcctt acggtgtgct gctttctggt ggtctggatt cctcaattat
    30961 ttccgctatc accaagaaat acgcagcccg tcgcgtggaa gatcaggaac gctctgaagc
    31021 ctggtggccg cagttacact cctttgctgt aggtctgccg ggttcaccgg atcttaaagc
    31081 agcccaggaa gtggcaaacc atctgggcac ggtgcatcac gaaattcact tcactgtaca
    31141 ggaaggtctg gatgccatcc gcgacgtgat ttaccacatc gaaacttatg atgtgaccac
    31201 tattcgcgct tcaacaccga tgtatttaat gtcgcgtaag atcaaggcga tgggcattaa
    31261 aatggtgctg tccggtgaag gttctgatga agtgtttggc ggttatcttt acttccataa
    31321 agcgcccaac gctaaagaac tgcatgaaga gacggtgcgt aaactgctgg ccctgcatat
    31381 gtatgactgc gcgcgcgcca acaaagcgat gtcagcctgg ggcgtggaag cacgcgttcc
    31441 gttcctcgac aaaaaattcc ttgatgtggc gatgcgcatt aacccgcagg ataaaatgtg
    31501 cggtaacggc aaaatggaaa aacacatcct gcgtgaatgt tttgagtcat acctgcccgc
    31561 aagcgtggcc tggcggcaga aagagcagtt ctccgatggc gtcggttaca gttggatcga
    31621 caccctgaaa gaagtggcgg cgcagcaggt ttctaatcag caactggaaa ctgcccgctt
    31681 ccgcttcccg tacaacacgc caacctcaaa agaagcgtat ctgtaccggg agatctttga
    31741 agaactgttc ccgcttccga gcgccgctga gtgcgtgcct ggcggtcctt ccgtcgcgtg
    31801 ttcttccgct aaagcgatcg aatgggatga agcgttcaag aaaatggacg atccatctgg
    31861 tcgtgcggtt ggtgttcacc agtcggcata taagtaagaa atgcgaaaca gccccggtga
    31921 aatccggggc tgtttcagtt attgaggtgc ttgttgattc tgatatgcag taaggaaatg
    31981 ttccgggttt gccacatcac tgtttgacaa ctcatcactg taggccagta tttcatagat
    32041 taatttccca ccactattgt tgaattccga atttcatcct gtacgacaaa agaatggctg
    32101 tagggtgggg aaaaaacaca aagtaaacaa taattgacga atatagcgcc acgctgttcg
    32161 caacctaacc aaatagtcac tttcgagcaa ttttccttga aaaagaggtt gacgctgcaa
    32221 ggctctatac gcataatgcg ccccgcaacg ccgataaggt atcgcgaaaa aaaagatggc
    32281 tacgtagctc agttggttag agcacatcac tcataatgat ggggtcacag gttcgaatcc
    32341 cgtcgtagcc accatctttt tggcgggagt ggcgaaattg gtagacgcac cagatttagg
    32401 ttctggcgcc gcaaggtgtg cgagttcaag tctcgcctcc cgcaccattc accagaaagt
    32461 gttgtacgga tggggtatcg ccaagcggta aggcaccggt ttttgatacc ggcattccct
    32521 ggttcgaatc caggtacccc agccatcttc ttcgagtaag cggttcaccg cccggttatt
    32581 ggggtatcgc caagcggtaa ggcaccggtt tttgataccg gcattccctg gttcgaatcc
    32641 aggtacccca gccatagaag aaacaatctg gctacgtagc tcagttggtt agagcacatc
    32701 actcataatg atggggtcac aggttcgaat cccgtcgtag ccaccaaatt ctgaatgtgt
    32761 cgaatacgtt cggcaaattc aaaaaccaat ttgttggggt atcgccaagc ggtaaggcac
    32821 cggattctga ttccggcatt ccgaggttcg aaccctcgta ccccagccaa tttattcaag
    32881 acgcttacat cgtaagtgca cccagttggg gtatcgccaa gcggtaaggc accggattct
    32941 gattccggca ttccgaggtt cgaatcctcg taccccagcc acattaaaaa agctcgcttc
    33001 ggcgagcttt ttgcttttct gcgttcattc aatgtcgaat gcgatgttga cacgtcttat
    33061 ccttcaatgt cggatgcgac gctgccgcgt cttatccgac ctacggttgg cacgcatccg
    33121 gcaatgttgt aaggctacaa ccctaacgca tatttcagcg cctgacgttt caacacgcca
    33181 gcacgctctg ccgccattaa cccgagatta cgcacaaaac gcagcggcgg cagattatta
    33241 ctgaatccgg cataaaacag atccatacca ctttgcataa tgaagttatc cgccatgcgc
    33301 cgcatctggt aacgcttgag gacaggataa ctggcccacg cttcaccgta actgcgggca
    33361 ttcaccagaa catcaatcag ggcatcgaca tcacgataac caagattcac cccctgcccc
    33421 gccagcggat ggatggtatg cgcggcatcg cccaccagcg caagccccgg ctgcacatac
    33481 tgcaacgcat gtcggcgcgt cagcggaaac gcaccagcgg caagcggtgt aacgtaaccc
    33541 agacgcgacg ggaaatgctt cgcgatttcc gcctggagtt gcgccatatt catattctgc
    33601 aactggcgaa tacgcgccgg agagtcatac cacaccagcg atgcccagtt atcaaacaac
    33661 ggcagaaacg cacgcggtcc gtccggggta aattgctgcc aggtgctgtc gccgggatcg
    33721 ttctcacact gtacgctaat caacatgcac gactgcgcat actgccaggc atgaacgcca
    33781 attcccgcca tctgccgcac ctgagaattt gcgccgtcgg caccaatcac cagtttcgcg
    33841 cggatcgttt caccgccctt cagttccagc tcctgaagat cattatctcg atgtaatgca
    33901 atcagcgagc ctggcacacg taacgttact ttcggatgcg cttccagcgc ctgccacagc
    33961 gcctgttgca gtacggtgtt ttccaccata tagccaagca acggtagctt aagttcagcg
    34021 gcgtcaaaca ccacatgcgc cgtttcccac tcccacgttt ccagtctgcg gtaaggatgg
    34081 caacgcatag cctgtactgc atcccagacc cctaaccctt taagcaatga taccgatgcg
    34141 gcgctgatcg ccgagatccg cacgtccggt tggctatcag cgacaaacgg tgcaggttct
    34201 gcgtgctcga tcaccgttac cgaaaatccg tgctgtgcca gccccagcgc cagcgcgccg
    34261 ccgaccattc ctccgccgac aatggcaatt tccgttggtt gatttgtcat ggtcaatcat
    34321 cctgttagca atatgcttta agtttacagg atttttaccc ccaagggctg ataacgctca
    34381 tactggccac aacggcagca aagcattaca ctatgcgccc tgcattcctg gctactattt
    34441 cgcaagagca agtcgatgac caaaaaactc catattaaaa cctggggctg tcagatgaac
    34501 gagtacgatt catcgaagat ggccgatctg ctggatgcca cccacggcta tcaactgacc
    34561 gacgtggcgg aagaagcgga tgtgctgctg ctgaacacct gctcaatccg cgagaaggct
    34621 caggaaaaag tcttccatca gttgggtcgc tggaaactgt taaaagagaa gaatccagac
    34681 ctgattatcg gcgtcggtgg ctgcgtggca tcgcaagaag gcgagcacat tcgccagcgc
    34741 gcccactatg tcgatattat ttttgggccg caaacgctgc accgtctgcc ggagatgatc
    34801 aactccgtgc gcggcgaccg cagcccggtt gtagatatca gcttcccgga aatcgagaag
    34861 tttgaccgtc taccggaacc gcgcgccgaa gggccgaccg cgtttgtctc catcatggaa
    34921 ggctgcaata aatattgcac ctactgcgtg gtgccttaca cccgtggtga agaggtaagc
    34981 cgtccgtctg acgatattct gtttgagatt gcccagcttg cggctcaggg cgtgcgtgaa
    35041 gtcaacctgc tcggtcagaa cgtgaacgcc tggcgtggtg aaaactacga cggctccacc
    35101 ggatcgtttg ccgatctgct gcgtctggtt gctgcgatcg acgggatcga tcgtattcgc
    35161 tttaccacca gccatccgat cgaattcacc gacgatatca tcgaagtgta tcgcgacacg
    35221 ccggagctgg tgagcttcct gcatctgccg gtacagagcg gttccgatcg cattctgaac
    35281 ctgatgggcc gtactcatac ggcactggag tacaaagcga tcatccgtaa actgcgtgcg
    35341 gcgcgtccag atattcagat cagttctgat ttcatcgttg gcttccctgg cgaaaccacc
    35401 gaagacttcg agaaaacgat gaagctgatt gccgacgtca atttcgacat gagctacagc
    35461 tttatcttct ctgcacgtcc gggtacacca gccgccgata tggttgatga tgttccggaa
    35521 gaagagaaga agcagcgtct gtatattctg caagaacgta tcaatcagca agcgatggca
    35581 tggagccgcc ggatgctcgg caccacccag cgtattctgg tagaagggac ttcgcgtaag
    35641 agcatcatgg agctttccgg gcgtaccgaa aataaccgcg tggtcaactt cgagggcaca
    35701 ccggatatga tcggtaaatt cgtcgatgta gaaattaccg acgtctaccc gaactctctg
    35761 cgcggtaaag tggtgcgtac tgaagatgaa atgggcctgc gcgtggcaga aacaccggaa
    35821 tcggtgattg cccgtacccg caaagaaaac gaccttggcg tgggttatta tcagccgtaa
    35881 ttctcaggcc cgccgttccg gtgggccttg ttttttctct ctttatcccc atctttatcg
    35941 caatgcttgc gcctttttcc tgtggcgtga ataatttcct tataggccgg tgaatgttca
    36001 gcttccggcg gcatacagat aagaggaacg gtttgaacat agacactcgc gaaatcaccc
    36061 tggagccagc agacaacgcg cgtctgttga gcctgtgcgg cccgtttgat gacaacatca
    36121 agcagctcga acgccgtctc ggcatcgaga tcaatcgccg cgacaaccac tttaaactga
    36181 ccggccgtcc gatttgcgtc accgctgcgg cagacattct gcgtagcctg tatgtcgata
    36241 cagccccgat gcgcggtcag attcaggata tcgaaccgga acagatccac cttacgatta
    36301 aagaagcgcg agtactggag caaagtgcgg agagcgtgcc ggagtacggc aaagcggtca
    36361 atatcaaaac caaacgcggc gtaattaagc cgcgcacgcc aaaccaggcg cagtacatcg
    36421 ccaatattct cgaccatgac attaccttcg gcgttggccc ggcgggtacg ggtaaaacct
    36481 acctggcagt ggctgcggca gttgatgccc tggagcgtca ggagattcgc cgtattctgc
    36541 tgactcgtcc ggcggtcgaa gccggtgaga aactgggctt cctgcctggc gatttaagcc
    36601 agaaagtaga cccgtatctg cgcccactgt acgacgcgct gtttgaaatg ctgggctttg
    36661 agaaagttga gaaactgatt gagcgcaacg ttattgaagt cgcgccgctg gcctatatgc
    36721 gtggtcgtac gctgaacgac gcgtttatca ttctcgatga gagccagaac accaccatcg
    36781 aacagatgaa gatgttcctg acccgtatcg gttttaactc aaaagcggtt atcaccggcg
    36841 acgtcacaca gatcgacctg ccgcgtaata ctaaatcagg cttacgtcac gccatcgaag
    36901 tactggccga tgtcgaagag atcagcttta acttcttcca cagcgaagac gtggttcgtc
    36961 accctgtggt ggcgcgtatc gttaacgcct atgaagcctg ggaagaagcc gaacaaaaac
    37021 gaaaagcggc gctggcggca gaacgcaagc gcgaagaaca ggaacaaaaa tgagtcaggt
    37081 gatcctcgat ttacaactgg catgtgaaga taattccggg ttaccggaag agagccagtt
    37141 tcaaacatgg ctgaatgcgg tgatcccgca gtttcaggaa gaatcggaag tgactattcg
    37201 cgtggtcgat accgccgaaa gccacagtct gaatctgacc tatcgcggta aggataagcc
    37261 gaccaacgtg ctctccttcc cgtttgaagt gccgcctggc atggaaatgt cgctactggg
    37321 cgatctggtt atctgccgtc aggtggttga gaaggaagct caggagcaag gcaaaccact
    37381 ggaggcgcac tgggcgcata tggtggtgca cggcagtctg catttgttag gttacgatca
    37441 catcgaagat gacgaagcag aagaaatgga agccctcgaa acagagatta tgcttgctct
    37501 gggctatgag gatccgtaca ttgccgagaa agaataattt gccaggcatt tgactggcag
    37561 acgtccccgc cgttggtgat taacgacggc gttttgatta actaacatga gaacccatac
    37621 gacgccatga gcgacgacaa ttcacacagt agtgacacga taagcaacaa gaagggattt
    37681 ttctccctgt tactcagcca acttttccac ggtgaaccga aaaaccgtga cgaactgctg
    37741 gcgctgatcc gtgattccgg gcagaacgac cttatcgacg aagatacgcg cgatatgctc
    37801 gaaggggtga tggacatcgc agaccaacgc gttcgcgaca tcatgatccc ccgctcccag
    37861 atgattaccc tgaaacgcaa ccagacgctg gacgaatgcc ttgatgtcat catcgagtcc
    37921 gcccactcac gtttcccggt gattagcgaa gacaaagatc acattgaagg gattctgatg
    37981 gcgaaagact tgctgccgtt tatgcgcagc gatgctgaag ccttcagcat ggacaaagtg
    38041 ttacgtcagg cggttgtcgt tcctgaaagt aagcgcgtag accggatgct gaaagagttt
    38101 cgctctcagc gttaccacat ggcgatcgtc attgacgaat tcggtggggt ttccggtctg
    38161 gtgaccattg aagacatcct ggaactgatt gttggtgaga ttgaagacga atatgacgaa
    38221 gaagatgata tcgacttccg tcagctgagt cgtcatacct ggaccgtgcg cgcactggct
    38281 tccattgaag acttcaacga agcgttcggc acccacttta gcgatgaaga agtcgacact
    38341 atcggtggtc tggtgatgca ggcgtttggg catcttccgg cgcgtggcga aactatcgac
    38401 atcgacggtt accagttcaa agtggcgatg gccgacagtc gacgtattat tcaggttcat
    38461 gtcaaaatcc cggatgactc accccagccg aagctggatg aataaaaccg aaactggata
    38521 gataactaca tggcttttgc ctcattaatt gaacgccagc gcattcgcct gctgctggcg
    38581 ttattattcg gtgcctgcgg aacgctggcc ttctctcctt acgacgtctg gcctgcggcg
    38641 attatttcgt tgatggggct tcaggcgttg acctttaacc gccgtccact ccagtctgcc
    38701 gctattggct tttgctgggg atttggcctc tttggcagcg gtattaactg ggtctatgtc
    38761 agcatcgcga cctttggcgg aatgcctggc ccggttaaca tcttcctggt ggtgctgctg
    38821 gcggcgtatt tgtcgctgta taccggactg tttgctggcg tgctgtcgcg tctgtggccg
    38881 aaaaccacct ggctgcgcgt ggcgattgcc gcccctgctc tctggcaagt gaccgagttt
    38941 ctgcgcggtt gggtactgac aggcttcccg tggttacagt tcggctatag ccagattgat
    39001 ggcccgttaa aagggctggc accgataatg ggcgtggaag ccattaactt cctgctgatg
    39061 atggttagtg gcctgctggc actggcgttg gtcaaacgca actggcgtcc gctggtggtg
    39121 gccgtcgtgc tgtttgccct acccttcccg ctgcgttaca tccaatggtt taccccgcaa
    39181 ccggagaaaa ccattcaggt ttcgatggtt cagggcgata ttccgcaatc actgaaatgg
    39241 gatggagatc agcttcttaa tacgctgaag atttactaca acgcaacggc tccgctgatg
    39301 ggcaaatcat cgttgattat ctggccggag tcggcgataa ccgatctgga aattaatcag
    39361 caaccgttcc tcaaagcact ggacggtgag ttgcgcgata aaggtagctc gctggtaacc
    39421 gggattgtcg acgcgcgtct caataagcag aaccgctacg atacctacaa caccatcatc
    39481 acactgggta aaggtgcacc gtacagctac gaatcagccg atcgctataa caaaaaccat
    39541 ctggtgccgt ttggcgagtt tgtcccgctg gagtcgattc tgcgtccgtt agcaccgttc
    39601 tttgatctgc cgatgtcgtc gttcagccgt gggccatata tccagccgcc gctgtcagta
    39661 aatggtattg agcttactgc ggctatttgc tacgagatca ttctcggcga gcaagtgcgc
    39721 gataacttcc gcccggatac cgactatctg ctgactatct ccaacgatgc gtggtttggt
    39781 aaatctattg gtccatggca acacttccag atggcgcgaa tgcgtgcgct ggagctggcg
    39841 cgcccactgt tgcgcagcac caacaacggc attacggcgg tgattggccc gcagggtgag
    39901 attcaggcga tgatcccgca gttcacccgc gaggtgttaa ccactaatgt gacaccgacc
    39961 accggactca caccgtatgc acgtaccggc aactggccac tgtgggtgct gacggcactg
    40021 tttggttttg ccgctgtgtt gatgagtctg cgagcacgta aacgttgatg tgcctgatgt
    40081 atcctgcatg agcaaaacgt actttctcat tgagctttgg ggcatggtta tcatgcccct
    40141 ttttcttacg gttcagggat acaagccaca ttgccatatt ggggatgacg aataattgcc
    40201 tgcggatcaa gcgagcgcgt cctgtccatt tggatcaacc cgttcttcgc catgacaaat
    40261 atttttctac catccgctga a
//
LOCUS       DAJVUP010000016        39761 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.016, whole genome shotgun sequence.
ACCESSION   DAJVUP010000016 DAJVUP010000000
VERSION     DAJVUP010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39761
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.016"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            7..438
                     /locus_tag="OQQ75_000809"
     CDS             7..438
                     /locus_tag="OQQ75_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HCS1975228.1"
                     /translation="MALNLASGEGNFFIRPGGVFYVAGDKVGIIRLDAFKTSKEIQFA
                     VQSGPMLLENGVINPRIHPNVASRKIRNGVGINKQGNAVFLLSQQATNFYDFACYAKA
                     KLNVEQLLYLDGTISHMYMKGGAIPWQRYPFVTMISVERKG"
     gene            521..1423
                     /locus_tag="OQQ75_000810"
     CDS             521..1423
                     /locus_tag="OQQ75_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HCS1975229.1"
                     /translation="MKKTLATLFLLTCLGSSSAYADNALILQTDFSLKDGAVSAMKGV
                     AFGVDHNLKIFDLTHEIPPYNIWEGAYRLYQTASYWPQGSVFVSVVDPGVGTDRKSVV
                     LKTKSGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
                     ARLASGAITFEQVGPELPAKVVELSYQKAKATKGEVKGNIPILDIQYGNVWSNISDEL
                     LNQAEIKLNDTLCVTISEGSQQKYAGKMPYVASFGDVPEGQPMVYLNSLLNVSVALNM
                     DNFAQKHQVASGADWNIDVKKCAK"
     gene            complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="OQQ75_000811"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="OQQ75_000811"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HCS1975230.1"
                     /translation="MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA
                     WLMSVENCLPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH
                     MDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
                     SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL
                     VDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAET
                     IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVV
                     NRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL
                     SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
                     AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN
                     LEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLE
                     FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE
                     VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAKFG
                     EGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV"
     gene            complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="OQQ75_000812"
     CDS             complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="OQQ75_000812"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase YigB"
                     /protein_id="HCS1975231.1"
                     /translation="MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHP
                     ALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAM
                     INFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHG
                     RSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTW
                     DSRLLPHLEISRLASLTSLI"
     gene            complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="OQQ75_000813"
     CDS             complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="OQQ75_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HCS1975232.1"
                     /translation="MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG
                     LQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS
                     APKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL
                     DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISAR
                     NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT
                     HLDFQHLASVYDAAHPRAKRGK"
     gene            complement(5323..6030)
                     /locus_tag="OQQ75_000814"
     CDS             complement(5323..6030)
                     /locus_tag="OQQ75_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HCS1975233.1"
                     /translation="MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVP
                     HPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSL
                     DDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQ
                     HYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLH
                     EIALMLPELLERWIERV"
     gene            complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="OQQ75_000815"
     CDS             complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="OQQ75_000815"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HCS1975234.1"
                     /translation="MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQ
                     LLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANG
                     RMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHC
                     VIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACG
                     SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL"
     gene            complement(6896..7090)
                     /locus_tag="OQQ75_000816"
     CDS             complement(6896..7090)
                     /locus_tag="OQQ75_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004987677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1975235.1"
                     /translation="MKNVFKVLTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVET
                     QTQSTVPDKNDRATGMVHPR"
     gene            7553..7873
                     /gene="cyaY"
                     /locus_tag="OQQ75_000817"
     CDS             7553..7873
                     /gene="cyaY"
                     /locus_tag="OQQ75_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HCS1975236.1"
                     /translation="MNDSEFHRLADQLWLTIEEHLDDWDGDSDIDCEINGGVLTITFE
                     NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGET
                     VSFR"
     gene            complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="OQQ75_000818"
     CDS             complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="OQQ75_000818"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HCS1975237.1"
                     /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY
                     HHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMG
                     STSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENR
                     FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTL
                     YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
                     NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVC
                     EKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQ
                     SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT
                     FIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLY
                     IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF
                     RNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTIL
                     GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS
                     GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEG
                     IIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
                     SFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS"
     gene            10846..11787
                     /gene="hemC"
                     /locus_tag="OQQ75_000819"
     CDS             10846..11787
                     /gene="hemC"
                     /locus_tag="OQQ75_000819"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HCS1975238.1"
                     /translation="MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTR
                     GDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERE
                     DPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD
                     NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDARTRELLAA
                     LNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGER
                     RGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA"
     gene            11784..12524
                     /gene="hemD"
                     /locus_tag="OQQ75_000820"
     CDS             11784..12524
                     /gene="hemD"
                     /locus_tag="OQQ75_000820"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HCS1975239.1"
                     /translation="MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGRQLPQLA
                     DQLAALGESDLLFALSQHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQK
                     ILYPQDREISEVLLQLPELQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCECYQR
                     CAIHYDGAEEAMRWQSREVTMVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERL
                     AKLARELGWQDIKVADNADNDALLRALQ"
     gene            12546..13769
                     /gene="hemX"
                     /locus_tag="OQQ75_000821"
     CDS             12546..13769
                     /gene="hemX"
                     /locus_tag="OQQ75_000821"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1975240.1"
                     /translation="MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAI
                     AIALAAGVGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLK
                     QANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA
                     LLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRL
                     ADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQD
                     IYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQL
                     SQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPAPAPAPAPAPA
                     PAPQGDTPAAAPQGE"
     gene            13772..14968
                     /gene="hemY"
                     /locus_tag="OQQ75_000822"
     CDS             13772..14968
                     /gene="hemY"
                     /locus_tag="OQQ75_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX biogenesis protein HemY"
                     /protein_id="HCS1975241.1"
                     /translation="MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL
                     AIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQ
                     VEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV
                     RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHV
                     GDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIEC
                     DDHDTAQQIIIDGLKRQYDDRLLLPIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTL
                     GQSLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL
                     QNNPPQ"
     gene            15646..15807
                     /locus_tag="OQQ75_000823"
     CDS             15646..15807
                     /locus_tag="OQQ75_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000395868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975242.1"
                     /translation="MEFSFSPKLLVVAVAAALPLMASAADTPSTATARKGFAGYDHPN
                     QYPQNAAIY"
     gene            complement(15891..17126)
                     /locus_tag="OQQ75_000824"
     CDS             complement(15891..17126)
                     /locus_tag="OQQ75_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1975243.1"
                     /translation="MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTH
                     MDDDTLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLDFYRRAVKLQAKYGAGRKISN
                     SFQTNGVLLDDKWCAFLAENHFLVGLSLDGPAEIHNQYRVTKGGRPTHKLVMRALTLL
                     QKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETAASDGLKLH
                     APGDIQGELTEWSVRPDEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVC
                     HHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQVFGEDKFKQ
                     LPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLL
                     AHGRPASDIMQAHLLVVNK"
     gene            complement(17273..17349)
                     /locus_tag="OQQ75_000825"
     tRNA            complement(17273..17349)
                     /locus_tag="OQQ75_000825"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17313..17315),aa:Pro,seq:tgg)
     gene            complement(17392..17478)
                     /locus_tag="OQQ75_000826"
     tRNA            complement(17392..17478)
                     /locus_tag="OQQ75_000826"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17442..17444),aa:Leu,seq:cag)
     gene            complement(17499..17574)
                     /locus_tag="OQQ75_000827"
     tRNA            complement(17499..17574)
                     /locus_tag="OQQ75_000827"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17539..17541),aa:His,seq:gtg)
     gene            complement(17633..17709)
                     /locus_tag="OQQ75_000828"
     tRNA            complement(17633..17709)
                     /locus_tag="OQQ75_000828"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17673..17675),aa:Arg,seq:ccg)
     gene            complement(17812..19197)
                     /locus_tag="OQQ75_000829"
     CDS             complement(17812..19197)
                     /locus_tag="OQQ75_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1975244.1"
                     /translation="MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS
                     VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA
                     VGISEITAVGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT
                     IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL
                     IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNESGSNGSPFVLTFA
                     KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVA
                     GVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAA
                     IASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGL
                     NRHGKAHKLEE"
     gene            complement(19388..20128)
                     /gene="rffM"
                     /locus_tag="OQQ75_000830"
     CDS             complement(19388..20128)
                     /gene="rffM"
                     /locus_tag="OQQ75_000830"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HCS1975245.1"
                     /translation="MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAI
                     NAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMA
                     RAGKEGTPVFLVGGKPEVLAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASG
                     AQIVTVAMGSPKQEIFMRDCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWL
                     YRLLSQPSRIKRQLRLLRYLRWHYTGNL"
     gene            complement(20131..21483)
                     /gene="wzyE"
                     /locus_tag="OQQ75_000831"
     CDS             complement(20131..21483)
                     /gene="wzyE"
                     /locus_tag="OQQ75_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA oligosaccharide polymerase"
                     /protein_id="HCS1975246.1"
                     /translation="MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFL
                     LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPR
                     RPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR
                     FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG
                     IIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLA
                     LLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTREVLNNHSGLAIS
                     PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF
                     NMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG
                     "
     gene            complement(21480..22559)
                     /gene="rffT"
                     /locus_tag="OQQ75_000832"
                     /gene_synonym="wecF"
     CDS             complement(21480..22559)
                     /gene="rffT"
                     /locus_tag="OQQ75_000832"
                     /gene_synonym="wecF"
                     /EC_number="2.4.1.325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HCS1975247.1"
                     /translation="MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDD
                     GLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPS
                     QFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGEL
                     LYFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNDHIAALRAVHQQFGDTVKVVVP
                     MGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQG
                     IGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKN
                     TIAFFSPNYLQGWQRVLAIAAGEVA"
     gene            complement(22556..23806)
                     /gene="wzxE"
                     /locus_tag="OQQ75_000833"
     CDS             complement(22556..23806)
                     /gene="wzxE"
                     /locus_tag="OQQ75_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid III flippase WzxE"
                     /protein_id="HCS1975248.1"
                     /translation="MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFR
                     QLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAA
                     APISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGV
                     LAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLS
                     KFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYL
                     LPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLF
                     AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQ
                     AYMATYIVYFSLCCGVFLLWRRRA"
     gene            complement(23808..24938)
                     /gene="rffA"
                     /locus_tag="OQQ75_000834"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(23808..24938)
                     /gene="rffA"
                     /locus_tag="OQQ75_000834"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HCS1975249.1"
                     /translation="MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF
                     GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRP
                     DTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST
                     YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFR
                     GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGR
                     IELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFG
                     EFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS"
     gene            complement(24943..25617)
                     /gene="rffC"
                     /locus_tag="OQQ75_000835"
                     /gene_synonym="wecD"
     CDS             complement(24943..25617)
                     /gene="rffC"
                     /locus_tag="OQQ75_000835"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HCS1975250.1"
                     /translation="MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRV
                     QAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVVAQETDIPALRQLASA
                     AFAQSRFRAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNA
                     TDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVEST
                     AYWLYR"
     gene            complement(25595..26476)
                     /gene="rfbA"
                     /locus_tag="OQQ75_000836"
     CDS             complement(25595..26476)
                     /gene="rfbA"
                     /locus_tag="OQQ75_000836"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS1975251.1"
                     /translation="MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA
                     GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLVQAFIIGETFLNGEPS
                     CLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDQERFGVVEFDDNFRAISLEEK
                     PKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRG
                     FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKT
                     GYGQYLLELLRARPRQY"
     gene            complement(26495..27562)
                     /gene="rffG"
                     /locus_tag="OQQ75_000837"
     CDS             complement(26495..27562)
                     /gene="rffG"
                     /locus_tag="OQQ75_000837"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1975252.1"
                     /translation="MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSL
                     APVAQSDRFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWNTLTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG
                     NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPN
                     KPHGVVHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLAN
                     ESWWKQVQDGSYQGERLGLKG"
     gene            complement(27562..28824)
                     /gene="wecC"
                     /locus_tag="OQQ75_000838"
     CDS             complement(27562..28824)
                     /gene="wecC"
                     /locus_tag="OQQ75_000838"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HCS1975253.1"
                     /translation="MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR
                     GEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAA
                     RSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPER
                     VLPGQVMVELIKNDRVIGGMTPVCSTRASELYKIFLEGECVVTNSRTAEMCKLTENSF
                     RDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA
                     QNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNI
                     DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVM
                     LVDHSQFKVINGDNVHQQYVVDAKGVWR"
     gene            complement(28821..29951)
                     /gene="wecB"
                     /locus_tag="OQQ75_000839"
     CDS             complement(28821..29951)
                     /gene="wecB"
                     /locus_tag="OQQ75_000839"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312746.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HCS1975254.1"
                     /translation="MKVLTVFGTRPEAIKMAPLVHALAKAPFFEAKVCVTAQHREMLD
                     QVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLAT
                     SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN
                     VADSRIFITGNTVIDALLWVRDQVMSSDTLRSELVANYPFIDPNKKMILVTGHRRESF
                     GRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPF
                     VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVE
                     EVTRLLKDENEYQTMSRAHNPYGDGQACSRILEALKNNRISL"
     gene            complement(30007..31053)
                     /gene="wzzE"
                     /locus_tag="OQQ75_000840"
     CDS             complement(30007..31053)
                     /gene="wzzE"
                     /locus_tag="OQQ75_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA polysaccharide chain length modulation
                     protein"
                     /protein_id="HCS1975255.1"
                     /translation="MTQPMPGKPTEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIA
                     LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYK
                     EFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDS
                     VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKA
                     IYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGP
                     AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGG
                     LIGAGVALTRRCSK"
     gene            complement(31065..32168)
                     /gene="wecA"
                     /locus_tag="OQQ75_000841"
     CDS             complement(31065..32168)
                     /gene="wecA"
                     /locus_tag="OQQ75_000841"
                     /EC_number="2.7.8.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HCS1975256.1"
                     /translation="MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQ
                     GLIPLVGGISVYAGICFTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRAT
                     IQAAVGIVMMVFGKLYLSSLGYIFGSWEMALGPFGYFLTLFAVWAAINAFNMVDGIDG
                     LLGGLSCVSFAAIGMILWFDGQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDA
                     GSTLIGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD
                     RQHIHHLIMRAGFTSRQAFVLITLAAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLY
                     GYCIKRAWKVARFIKRVKRRLRRNRGGSPNLTK"
     gene            complement(32408..33667)
                     /gene="rho"
                     /locus_tag="OQQ75_000842"
     CDS             complement(32408..33667)
                     /gene="rho"
                     /locus_tag="OQQ75_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HCS1975257.1"
                     /translation="MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR
                     PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
                     VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
                     FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE
                     IDAMEFLINKLAMTKTNDDFFEMMKRS"
     gene            complement(33752..33853)
                     /gene="rhoL"
                     /locus_tag="OQQ75_000843"
     CDS             complement(33752..33853)
                     /gene="rhoL"
                     /locus_tag="OQQ75_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rho operon leader peptide RhoL"
                     /protein_id="HCS1975258.1"
                     /translation="MRSEQISGSSLNPSCRFSSAYSPVTRQRKDMSR"
     gene            complement(33994..34323)
                     /gene="trxA"
                     /locus_tag="OQQ75_000844"
     CDS             complement(33994..34323)
                     /gene="trxA"
                     /locus_tag="OQQ75_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017375425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HCS1975259.1"
                     /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD
                     EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE
                     FLDANLA"
     gene            34454..35719
                     /gene="rhlB"
                     /locus_tag="OQQ75_000845"
     CDS             34454..35719
                     /gene="rhlB"
                     /locus_tag="OQQ75_000845"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HCS1975260.1"
                     /translation="MSKTHLTEQKFSDFALHPKVVEVLEKKGFHNCTPIQALALPLTL
                     AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHA
                     DAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ
                     VVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEY
                     IEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHL
                     AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTD
                     LPKPLRLTRPRTGNGPRRTGAPRNRRRSG"
     gene            35853..37337
                     /gene="gppA"
                     /locus_tag="OQQ75_000846"
     CDS             35853..37337
                     /gene="gppA"
                     /locus_tag="OQQ75_000846"
                     /EC_number="3.6.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine-5'-triphosphate,3'-diphosphate
                     diphosphatase"
                     /protein_id="HCS1975261.1"
                     /translation="MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAA
                     GLNSENALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQE
                     ILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSL
                     SMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQAL
                     QEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIF
                     TELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVA
                     ANFFDQVEKEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPA
                     QKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMT
                     LQANHELLTLTLPQGWLTQHPLGKEIIAQESQWQSYVHWPLEVH"
     gene            complement(37384..39405)
                     /gene="rep"
                     /locus_tag="OQQ75_000847"
     CDS             complement(37384..39405)
                     /gene="rep"
                     /locus_tag="OQQ75_000847"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HCS1975262.1"
                     /translation="MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG
                     YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK
                     ANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGER
                     DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQD
                     TNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQN
                     YRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEHEAERVTGELIAH
                     HFVNKTQYKYYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV
                     LTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY
                     EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQL
                     FSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP
                     YVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRP
                     EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK"
BASE COUNT         9866 a        10803 c        10054 g         9038 t
ORIGIN      
        1 cagaaggtgg cgttaaatct cgcttcaggt gaagggaatt tctttatccg tcctggcggc
       61 gtgttttatg ttgcgggaga taaagtcggc atcattcgtc tggatgcctt taaaaccagt
      121 aaagagattc agtttgcggt gcagtcaggg ccaatgttat tagaaaacgg cgtaattaat
      181 ccacgcattc acccgaatgt tgcctcgcgt aaaattcgta acggtgtagg gattaataaa
      241 caagggaacg ccgtgttttt gttgagccag caggcgacaa atttttatga ttttgcctgt
      301 tatgccaaag cgaaactgaa cgttgagcag ttgctttatc ttgatggcac aatttcacat
      361 atgtatatga aaggcggggc aatcccgtgg caacgctatc cttttgtcac catgatttcc
      421 gtcgagcgga aaggttaagc attgtacact cgaggaggcc agacaaactg ggactggcta
      481 cacagctgga aaatcatcag ataaatgaag ggaaacaaaa atgaaaaaaa cgctcgcaac
      541 gttattttta ttaacgtgtc tgggatcatc atccgcctat gcggataacg ctttgatttt
      601 acaaactgat tttagcctga aagatggtgc cgtctcggcg atgaaagggg tcgcattcgg
      661 cgttgaccat aatcttaaaa tctttgattt aacacacgaa attccaccgt ataacatctg
      721 ggaaggcgct tatcgcctgt atcagactgc cagttactgg ccgcaaggtt cggtgtttgt
      781 tagcgtggtc gatccgggcg taggcactga ccgtaaatcg gtagtgctga aaaccaaaag
      841 cggtcaatac ttcgtttcac cagataacgg tacgctcact ttggtggcac aaactctggg
      901 tattgatagc gtccgggaaa tcgacgaaaa agctaaccgc ctgaaaggtt ctgaaaagtc
      961 atataccttc cacggtcgtg acgtgtatgc ctacaccggt gcacgtctgg cttccggggc
     1021 gattacgttc gaacaggtgg ggccagagct tccagcaaaa gttgtcgaac tttcttatca
     1081 gaaagcaaaa gcaacaaaag gtgaagtgaa gggcaatatc ccgattctcg atattcagta
     1141 cggcaacgtc tggagcaata tcagcgacga gttgctgaat caggcagaaa tcaaactcaa
     1201 cgacacgttg tgtgtgacca tttccgaagg ttcccagcaa aaatacgcag ggaaaatgcc
     1261 gtatgtcgca agcttcggcg atgtgccgga aggccagccg atggtgtatc tgaacagctt
     1321 attgaatgtt tccgtggcgc tgaatatgga taatttcgcg cagaaacatc aggttgcgtc
     1381 tggtgctgac tggaatattg atgtgaagaa gtgcgctaag taaggtgctg atgcggaatg
     1441 cggtgtggcg caccgcatcc cgcaacgtca caccgtctcc aaccgggcat aagccgccac
     1501 cagccattta ataccctggc cctggaatgc cacctgcaaa cggctatgtt caccgctgcc
     1561 ttccatattg acgatggtgc cttcaccaaa cttagcgtgg cgtacacgct ggccgagctt
     1621 gtagccgctg tcgttctcga ccatcggcgt acccatccgc tgatggctga ccgggcggct
     1681 taccgtggcg cgcaggcgca cctcttccac acactcttcc ggcagctcgc caataaagcg
     1741 cgacgggcga tggtaaacct ctttgccata cagacggcga gtttccgcgt aggtcagcgt
     1801 cagtttctgc atcgcgcggg ttacgccaac gtaggccaga cggcgttctt cttccagacg
     1861 cccgccttca tccagcgaca tctggcttgg gaacatgccc tcttccatac cgacgataaa
     1921 cacctgcggg aactccagac ctttcgccga gtgcatggtc atcagttgta ccgcatcctg
     1981 ccaggtatcc gcctgccctt cgcctgcttc cagcgccgca tgggatagga acgcctgcag
     2041 cggcattaaa tcttcgtctt cttcgttgta gctgaactgg cgcgttgccg tcaccagttc
     2101 ctctaagttt tcgatacgcg tctgaccttt ttcgcccttc tcctgctcgt acatggtacg
     2161 caggccggag tctttaatta cccggtcagt ctgtacatgc agcggcatat cggcagtttc
     2221 ctgcgctaag gcgtcgatca gttccataaa ccgctgtaag gcgctggcag cacgtccggc
     2281 gagggctttt tcctgcaaca gttcacgaca tgcctgccag agtgttaact ggcgatcgcg
     2341 cgatgtctga cgtaccacgt ccagcgtccg gtcaccaata ccccgcgttg gcgtattcac
     2401 cacacgctca aaggccgcgt cgtcgttacg gttggcaatc aggcgcagat acgagagcgc
     2461 atctttgatt tcctggcgtt cgaagaagcg catcccgccg taaatacggt acggcatact
     2521 cgcctgcaac agtgcttctt ccagcacacg cgactgggcg ttactgcggt agagaatggc
     2581 gcactcggca agcgccccgc cgttgtcctg ccaggttttg atgcggttaa ccacaaaacg
     2641 cgcttcatcg agttcgttaa aagcgcaata gagggaaata ggctcaccgt ccgcgccatc
     2701 ggtccacagt tttttaccca gacgcccgtt attgttttca atcagggcgt tagcggcgct
     2761 cagaatattg ctggtagagc ggtagttttg ctccagacga atagtttcgg caccggggaa
     2821 atcattaagg aaacgctgaa tattctccac ctgcgccccg cgccagccgt agattgactg
     2881 gtcgtcatca ccgacgatca tcactttgcc ggtgtcgccc gccagcaggc ggatccacgc
     2941 gtactgaatg ttgttggtat cctggaattc gtccaccagg atattggtaa aacgttcgcg
     3001 gtagtgttgc aggatatgcg gcttgttaag ccacaactcg tgagcgcgca gcagcagctc
     3061 ggcgaagtcc accaggcccg cgcggtcaca cgcttcctga tacgcctgat acaccttctg
     3121 ccaggtctgc tccaccggat taccgtagct ttgaatatga tgtggacgca ggccttcatc
     3181 tttctggctg ttgatgtacc acattgcctg gcgcggcggc cactgcttct cgtcgaggtt
     3241 catcgccttg attaggcgtt tgagcaggcg tagctggtcc tcgctgtcga ggatctgaaa
     3301 atcctgcggc agattggcgt ccatatggtg cgcacgcagc agacggtgcg ccagcccgtg
     3361 gaaggtgccg acccacatgc cgccctggct ggtgcccatt agctgcccga tacgatgacg
     3421 catctccgcc gccgctttgt tggtaaacgt caccgccata atcgagtatg gcaagcagtt
     3481 ttccacgctc atcagccagg cgatacgatg caccagtacg cgcgtcttac cactgcccgc
     3541 gcccgccagc accagaaggt tgctgcgtgg cgcggccacc gcttcgcgct gtttgtcatt
     3601 aaggctgtcg agcaggtaag aaacgtccat tggcaccgcc gcgtaaaaat aggttgggcg
     3661 gagaagcgca acgccctccg ccaaaaagct gggtatatat acagatttgc tgattatatc
     3721 agcgaggtca gagatgccaa ccgggaaatt tccagatgcg gcagtaaacg gctgtcccag
     3781 gtttgcatca gatcgccatt ttccggtctg atccaacagg cctgcattcc gctgcgaatt
     3841 gccccaccca cgtcagtggt gagatcgtcc ccaacatgta agatctcgcc gatcggcacg
     3901 ttgagttttt ccgcagccag aaagtacata tcgctgaacg gttttgagcg cccgtgcggg
     3961 ccagcgcgca gcacaaactc aaaataatcc cccaaaccaa acagttccgg ctgggcgtta
     4021 ccgttggtga tcgccaccag cggccatttc ttcgccagct gttttaaggt gtcgtgagtt
     4081 tgctgcggga cgtcgattcg gctgcgccat ttggcaaagt tgatcattgc tgcgtgtgcg
     4141 cctgcactgg cttcttcggc actcagcccg gcgtcgagca tcgcttgttc aatcgaacga
     4201 aaacgccagc gcgtcacgtc gtgataaatc tcgggttccg cttcccgtac cgcctggcgc
     4261 aggcgttgca gatcttcatt ctggaagctg cgcagcgccg gatgataatt ttgcacaaag
     4321 gtaagcgcct ctcgctcggt gcgcaaaatc accggacggt tatcgtaaag ggtatcatcc
     4381 aggtcaaagg tgagcgccga gatgcgcccc aaaggccggt aaaaacgcat tatttccccc
     4441 gtttggcgcg tggatgcgcc gcatcgtaca ccgaggcaag gtgttgaaaa tcaagatgag
     4501 tatagatttg cgtggtggag aggttggcat gacccagtag ctcctgcaca ccacgaagat
     4561 cgccgctcga ctccagcata tgcgtagcga acgagtgacg taatttatgt gggtgaacgt
     4621 gattattcag cccttgtttt atgccccatt cggcaaagcg tttctgcaca ttacgcgcgg
     4681 agatacgctt gcccagtttc gacagaaaaa gcgcgtcgtc ttcgctacca aacaggtcgc
     4741 gcaaatcaag ccagtgctca atccacgcca cagcgttgcg accaatcggc aggcggcgct
     4801 ctttgctgcc tttccccatt acccacactt caccagactc caggtcgagg tgtttgatat
     4861 ccagccccac cagctcggaa agacgcagac cagcgccgta catcacttcc agcattgcac
     4921 ggtcgcgtac agcgagggga tcgttgatat caatatccag cagccgattc atatcgtcga
     4981 cgtcgatatt tttcggcaga tgacgcggcg ctttcggtgc cgaaacacct ttcgccgggt
     5041 tagctttgag ttcgttctgg ctgaccagcc agtcaaaaaa gctacgtagc gcagaaagcc
     5101 gtaacgccag acttgctgct cccagccctt tacggcgact gcgtacagca aaattgcgca
     5161 ccatcgtcac atcacattgc tgccagcttt gcaggccgtt ttcgctggca aaattgatga
     5221 tcgcctcaag ctgacgctgg tagttaagca gggttatcgg gctaagctgg cgctccacgc
     5281 tcagataacg taggtagcgt tctacatcgg tgtgtaaatc ggtcatacgc gttcaatcca
     5341 acgctccaga agctccggca acatcagcgc aatttcatga agtaactgcg ttccttgccc
     5401 ttgttgatag tgactggcat cgcgactggt aaacagcacg acacccaaat cagcatcgct
     5461 tcccagcatc gacatcgcca ccgatcccac cgctttcgct tccggtagca ccaccagcag
     5521 ctctggtccg ttaagcggcc caagatagtg ctgttcctgc cccaaacgct gaatacgcag
     5581 cggttcgaaa gactgacggc ttaatgccag atgagtgtgg ttcgacggcg cacctaagcg
     5641 ccagcgatcc ggaaacaggc gcagactcgc acctgccagg ccgagatcgc gcgcccagcg
     5701 gtgaaagcgc atcagcatat cgtcgagact gctggcggcg gtgagactgc gctgcaggta
     5761 gagtaggcga taaaacaggc cttcgttggc gatagcctgt tccatcaaca gcgccatgtt
     5821 ctcttccaga acatgaatat gattacgtgc gcgggccatg tgccactcga ccaacgaaac
     5881 ggtgccgcgt accggatgtg gcacacgtat cgcttctact gcgcgcgcat tacggataaa
     5941 aaactcagga tttttaatca gataatcgac aaccgcccgg tcatcaagct ccgtgagtgt
     6001 ttcctgcagt tcttcccctg gttgcttcat agatgaataa atccgtcgta gacatgtacc
     6061 gccgggccag tcatatataa cgggtgaccc ggacctttcc aggcgatatc aagacgaccg
     6121 ccggggagtt ccacgcgtac ttcttcggcc agcaaacctt gctgaatccc tactgcaacc
     6181 gccgcacacg cgccgctgcc gcaggcctgg gtttctcctg ccccacgctc ataaacgcgt
     6241 aaacgaatat gctcgcgctt aaccacttgc ataaaaccga tattggcgcg ctccggaaaa
     6301 cgctcgtggc tttccagaac aggaccaagc gtttctaccg ccgcggtatc gacatcatcg
     6361 acctgaatca cgcaatgcgg atttcccatc gacaccacgc cgcataagat tgtctgctcg
     6421 gcggcgcgca taatataggt cttttccgct ttgttagcgc gaaacggcac agcggaaggt
     6481 tcgaagttgg gttcgcccat atttacgcgg accagatcat catcggtgac ggtcagaacc
     6541 atccgcccgt tggcggtgct gacgcggata tcgcgcttat tggtcagccc tttcaggcgc
     6601 acaaaacggg caaagcagcg cgcaccgttg ccgcactgcg ccacttcact gccatcagca
     6661 ttgaaaatgc gatagtgaaa atccagttca ggatcatacg gcggctcaac caccagcagc
     6721 tggtcaaacc ctacccccag gtgccgatcc gccagccgac gaatcagctc cggtgaaaaa
     6781 aagacattct gcgttaccgc gtcgacgacc ataaaatcgt tgccaaggcc atgcattttc
     6841 gagaactgca tcatttactc caatcacgcg ggtacagaaa ctgactttta gtaattcacc
     6901 tgggatggac catcccagtg gcgcgatcgt ttttatccgg caccgtggat tgcgtttgcg
     6961 tctctaccgg tttggtcggc ggcggtgcat ttttatctgc aggcgggaaa tagagcggac
     7021 ctttcagacc gcagcccgtc aggctgaaga gagtaagtaa tacagtgagt accttaaaca
     7081 cgtttttcat tatggattgc ctgtaaagtt catcgctttc tgctttctat catcgcagga
     7141 gaaggcgtaa aagcaagcgt ttagcgactc tttatgaagt ctgaaaagtg aggaaatgct
     7201 gcgagtataa cgcttactcg tgaggattta tgttctgctg gcagtttcgt gatcggcacc
     7261 tcgcgccagg atggctttat gcactatcgc aatgtggttt gtttgttggc ttttttagtt
     7321 ccgtcagcgt gaggatgctc gctcggtaaa cctgatcata atgtttacca gaaacaggga
     7381 aaggcgtggt gtaactgcgc cctaatgaag agacaaatct ttcgccacac agagacatca
     7441 ttattccggt gacggatgaa tcatgccgga acgcagcagc agaggtgcaa actttgaagc
     7501 cctgacccca tgccgctata ctgccgccat cacttaaaaa caggatacaa caatgaacga
     7561 cagtgaattt catcgcctgg ctgatcaact gtggctgacc attgaagagc atctggacga
     7621 ctgggatggc gacagcgata tcgactgcga aatcaacggc ggcgtgctga ccattacctt
     7681 tgaaaacggc agcaaaatca ttatcaaccg ccaggaaccg ctgcaccagg tatggctggc
     7741 aaccaaacaa ggcggctacc attttgatct gaaaggcgat gagtggattt gcgatcgcag
     7801 cggcgaaacc ttctgggatt tgctggaaca ggcggcgacg cagcaggcag gtgaaacagt
     7861 cagtttccgc taagattgca tgccggataa gcctcgcttt ccggcacgtt catcacgaaa
     7921 aatattgctg taatagcggc gtatcgtgat cctgattggc aggcggcatg ttaccgatag
     7981 attttgtgcg gaacggaatc acctgttcac gaccatcaac cttcacaatc tgatagaact
     8041 gcggcaggtt gaagttgatg aagcttgagc cgtaggtgaa gcggtcgtgc gatgacgagt
     8101 agaagcgact gacgtcacgc accagttcct ctttgctgcc ttcgcagtgg tgatacacct
     8161 caacccggtt gctttcgtca agaatgtaga tattaaagcc attctcgtct tgcgtttctt
     8221 cgaagaagaa ctggatgatc ccttcactag caaagccgtc caccaccgcc ggtaatttga
     8281 cgtgattggt ttcaacctgc actgacaggc cgtgcagttt gttatgcgaa atagcgccat
     8341 aaaactcgat ggcgttctcc agcttctgta ccgatacatt caggcgttcg aagaacaagc
     8401 cccaggtttg accagaaacg cgcagcgcct tgaaacgccc ggtttcctgg cgggtgctgg
     8461 aaaggcgcag ttcaatacac tcagaaacca gttgctgcac gcgagtacgg attaacccgc
     8521 gcagatgctg gctataacag aagacttcca cgctatctgg cggtgcggcg tcctgatgca
     8581 ttttgccgag aatagttttc agggcttcga tcatcgattg ctcgccgttg aagtgcagcg
     8641 tacgcacttc gttccacgag ttgcggtaca gcaggtcaac gctacctacc aggcaatttt
     8701 gattctcgcc aaagctgaag acatccagct tacggaaatc aaaatgcacc acctgattgc
     8761 ggaacgccgc tgtcgggtca tattccaggt taacgataat cgccagatgg cggatctcac
     8821 acgggctgta gagcgccttc ggtgtcggtg caggtaagcg cagcgggaaa tggtgcgaca
     8881 cgtcggcgac catctcctgc aacttaggca aatcgacaat gccgttacct ttaatataca
     8941 aacgggtgcg cgaggtcagc aggccgttaa accatgccca cgccaccagt ttgttcaggt
     9001 aacggttata ttccagcggc tgatggctga tgatcgactc aatatttggc gcgcggttat
     9061 acagatacca acctgaacgg ttagcacggc ccggcggcac ataaataaag gtcagattcg
     9121 gttccgagag atcgggtgaa atctgcgggt ttaccagcgt cactttacct ggtaatgctt
     9181 caaacgcggc atacagctta cgcgtcagca cgccgatatc ctgcggactg gcggagacgc
     9241 taaggttatt gcgacgcgca aagcggatca gattacggta gctctgcatc atcgcgtcga
     9301 gcaactcgtt gtgcgcctca cgcacctgat caatcttcca gttagcgcgg ttatcgagca
     9361 ttgccagacg agcttcgtcc caaccccact cgctcactaa ctggctcaac actgcgcgac
     9421 gccagcctac gcaggcgcgt tcacggctga gcttttcgca cacttttaaa tagaagcagc
     9481 gacgtactaa atccagacgg gtaaaatctt caatcgccgt caggtattca gtaacacgct
     9541 ccagcatcat gcagtatgga tcgagaccaa acgatacaat ctcaccgtcg tgcaaacgct
     9601 gtttgatatc tttcgccagc agacgtgggt tcgggtattc ccaggaatag gcttccagca
     9661 gcagtgtttt cagtaccgct ttgtatgggg aatcgatact cttgtagagc tgccaaaggc
     9721 tggcaccaaa gtactcttca gcagaaagcg agcttaagcc accgagatcc agccattcat
     9781 ttggcgtcag cacgccctgc gcgtaaagcg tcatcacata gtcgtcgtaa tgctcttctt
     9841 cgtcgcacgg caccatattc cacagaatac gcttaccggc gagacgcacg gcggtacgat
     9901 aaaattcgtc aagcagcagt atatgctggg tggagccaca atcttcgccc cccaagctgc
     9961 cgctttcatt atgacggaag cggttttcat caatcaggaa gaagctgact tccacaccca
    10021 gcgaggcggc ccagctttcc agcagactac atttacgttg tagtaactgg cgctcttcgc
    10081 tatcgagcca ggattgatga cagacccaga tatccaggtc agaggaacaa ctttgcccta
    10141 cggacgaggt gctgcccatg gtgtatacac cagtaattgg aagctcacct ttcggtggat
    10201 cctgtactga cattccacga tacagttcaa gctcgttcag gtagtggcgt tgagtttcat
    10261 caggcgtgta aaggcaaatg cctttgggaa cgttaccatc aaggtaaccc ggcattagcg
    10321 gatggtgata gtgcaacaat gtcggcagta gactgtagac ctgttggaat gcaggcccca
    10381 tagcagcaag cgcgcgatcc acacgcaatt gatttatggc atccagtctc tgtttcagag
    10441 tctcaatata gaggtacaag acgtatcgcc tgatttgcta cccgtcatga ctgtgattcc
    10501 gccaacatca acggtaacac gcggcattcg ggatatttcg tatgtcaaag gtaaccgtta
    10561 ccacttttcg cgcctggttt ttttagtttc acgacgaaaa aatggtctaa aacgtgatca
    10621 atttaacacc ttgctgattg accgtaaaga aagatgcgct acatacaagt gtagcaccgt
    10681 ttattctctg taaattcctt attacgacgg cgtgaaacgc ctgtcaggat ccactgccag
    10741 acctcatttt acggtttgcg caggcgtcta cgtttcacca caacactgac atcactctgg
    10801 caaggatgtt aggatggacc acggatgata atgacggtaa caagcatgtt agacaatgtt
    10861 ttaagaattg ccacacgcca aagcccactt gcactctggc aggcacacta tgtcaaagac
    10921 aagttgatgg cgagccatcc gggcctggtc gttgaactgg taccgatggt gacgcgcggc
    10981 gatgtgattc ttgatacgcc gctggcgaaa gtaggcggaa aaggcttatt tgtaaaagag
    11041 ctggaagtcg cgctcctcga aaatcgcgcc gatatcgccg tacattcaat gaaagatgtg
    11101 ccggttgaat tcccgcaagg tctgggactg gtcactattt gtgagcgtga agatcctcgc
    11161 gatgcctttg tgtccaataa ctatgacagt ctggatgcgt taccagcagg cagtatcgtc
    11221 gggacgtcca gtttacgtcg ccagtgccaa ctggctgaac gccgcccgga tctgattatc
    11281 cgctccctgc gcggcaacgt cggcactcgc ctgagcaaac tagataacgg cgaatacgat
    11341 gccatcattc ttgccgtagc cggactaaaa cgtttaggtc tggagtcccg cattcgcgcc
    11401 gcgttaccac ccgagatttc tcttccagcg gtaggacaag gtgcggtcgg tattgaatgc
    11461 cgccttgatg atgcacgcac tcgcgagctg cttgccgcgc tgaatcacca cgaaactgca
    11521 ctgcgcgtta ccgcagaacg cgccatgaat acccgtctcg aaggcggatg tcaggtgcca
    11581 attggtagct acgccgagct tattgatggt gaaatctggc tgcgtgcgct ggtcggcgcg
    11641 ccggacggtt cgcagattat tcgcggtgaa cgccgcggtg cgccgcaaga tgccgaacaa
    11701 atggggattt cgctggcaga agagctactg aataacggcg cgcgcgagat cctcgctgaa
    11761 gtctataacg gagacgcccc ggcatgagta tcctggtcac ccgcccgtct cccgctggag
    11821 aagagttagt gagccgtctg cgcacactgg ggcaggtggc ctggcatttt ccgctgattg
    11881 agttttctcc gggtcgacaa ttaccgcaac ttgctgatca actggcggcg ctgggggaga
    11941 gcgatctgtt gtttgccctc tcgcaacacg cggttgcttt tgcccaatca cagctgcatc
    12001 agcaagatcg taaatggccc cgactacctg attatttcgc cattggacgc accaccgcac
    12061 tggcgctaca taccgtaagc ggacagaaga ttctctaccc gcaggatcgg gaaatcagcg
    12121 aagtcttgct acaattacct gaattacaaa atattgcggg caaacgtgcg ctgatattac
    12181 gtggcaatgg cggtcgtgag ctaattgggg ataccctgac agcgcgcggt gctgaggtca
    12241 ctttttgtga atgttatcaa cgatgcgcaa tccattacga tggtgcagaa gaagcgatgc
    12301 gctggcaatc ccgcgaggtg acgatggtcg ttgttaccag cggtgaaatg ttgcagcaac
    12361 tctggtcgct gatcccacaa tggtatcgtg agcactggtt actacgctgt cgactattgg
    12421 tcgtcagtga gcgtttggcg aaactcgccc gggaactggg ctggcaagac attaaggtcg
    12481 ccgataacgc tgacaacgat gcgcttttac gggcattaca ataactctca taacaggaag
    12541 ccataatgac ggaacaagaa aaaacctccg ccgtggttga agagaccagg gaggccgtgg
    12601 acaccacgtc acaacctgtc gcaacagaaa aaaagagtaa gaacaatacc gcattgattc
    12661 tcagcgcggt ggctatcgct attgctctgg cggcgggcgt cggtttgtat ggctggggta
    12721 aacaacaggc cgtcaatcag accgccacca gcgatgccct ggctaaccaa ctgacggcat
    12781 tgcaaaaagc ccaggagagc caaaaagccg agctggaagg cattattaag caacaagctg
    12841 cacagcttaa gcaggcgaat cgtcagcaag aaacgctggc aaaacagttg gatgaagtcc
    12901 aacaaaaggt cgccaccatt tccggcagcg atgctaaaac ctggctgctg gctcaggccg
    12961 attttctggt gaaactcgcc ggacggaagc tgtggagcga tcaggacgtc acgaccgctg
    13021 cagcgttgct gaaaagtgca gatgccagcc tggcggatat gaatgacccg agtctgatta
    13081 ccgttcgtcg ggcaattacc gatgatatcg ccagcctttc tgcagtttcg caggtggatt
    13141 atgacggcat catccttaag cttaatcagc tttcaaatca ggtagataac ctgcgtctgg
    13201 ccgataatga cagcgatggt tcgccgatgg attccgatgg tgaagagctt tccagttcca
    13261 tcagcgaatg gcgtatcaat ctgcaaaaaa gctggcagaa ctttatggac aacttcatta
    13321 cgattcgccg tcgtgatgac accgccgtac cgctgttagc gccaaatcag gatatctatc
    13381 tgcgcgaaaa tattcgctct cgcctgctgg tcgcagcaca agctgtaccg cgtcaccagg
    13441 aagagactta tcgccaggcg ctggagaacg tctccacctg ggtacgtgct tactacgata
    13501 ctgatgatgc caccaccaaa gcgttcctcg acgaggtgga ccagttaagc cagcaaaata
    13561 tctcgatgga tcttccggaa accctgcaaa gccaggcgat gctggaaaaa ctgatgcaga
    13621 ctcgcgtgcg taacctgctg gcacaaccgg cagcagggac aacggaagct aaacctgcac
    13681 ctgcacctgc acctgcacct gcacctgcac ctgcacctgc acctgcaccg caaggtgata
    13741 ctccggcagc cgcgccgcaa ggagaataac catgctaaaa gtgttattac tctttgtttt
    13801 gctgattgcg gggatagtgg ttggcccgat gattgccggt catcagggtt atgtgctgat
    13861 ccagaccgac aactacaata tcgaaaccag cgtcacgggc ctggcgatca tattgattct
    13921 ggcgatggta gtgctgtttg ccattgagtg gctactgcgg cggatcttcc gcactggcgc
    13981 gcacacccgt gggtggtttg tcgggcgtaa gcgtcgccgt gcacgtaagc agaccgaaca
    14041 ggcgctgctg aaactggcgg aaggcgatta tcagcaagtt gaaaagctga tggcgaaaaa
    14101 tgccgatcac gctgaacaac cggtggtgaa ctatctactg gctgccgaag ccgcgcaaca
    14161 acgtggtgat gaagcgcgcg ccaaccaaca tctggaacgc gcagcggagc tggccggcaa
    14221 tgacaccatt ccggtagaaa tcacccgtgt acgtctgcaa ctggcccgta atgaaaacca
    14281 tgctgcacgc cacggcgtgg ataagctgct ggaagttacg ccacgccatc cggaagtatt
    14341 acgtctggcg gaacaggcgt atatccgcac aggtgcatgg agttctctgc tggatatcat
    14401 cccatcaatg gcgaaagccc atgttggtga tgaagaacat cgtgcaatgc tggaacaaca
    14461 ggcatggatt ggcctgatgg atcaggcgcg tgccgataac ggtagtgaag gtttgcgtaa
    14521 ctggtggaaa aaccaaagcc ggaaaacgcg tcatcaagta gcgttgcagg tggcaatggc
    14581 ggaacatctt attgaatgtg acgatcatga tactgcccag caaattatca tcgatggcct
    14641 gaaacgccag tacgacgatc gcctactgct gccgattcct cgactgaaaa ccaacaatcc
    14701 ggaacagctg gaaaaagtgc tgcgccagca gatcaaaaac gtcggcgatc gcccgctgtt
    14761 gtggagcaca ctgggccagt cactgatgaa gcacggagaa tggcaggaag catcgctcgc
    14821 cttccgcgca gcgctgaaac aacgtccgga cgcctacgat tacgcatggc ttgccgacgc
    14881 gctggacaga ctgcacaagc cggaagaagc tgcagcgatg cgtcgcgacg gtttgatgtt
    14941 aacgttgcag aacaacccac cacagtagtt ccttctcacc cggaggcaag cacctccggg
    15001 acctttctga tgcataaaaa aacgcctgct cttattacgg agcaggcgtt aaaacaggtc
    15061 tgtatgacaa caagtgggtg cttcactcaa cgttgtgtcc atggtgtctg atgaggcata
    15121 agcgacatct gtcagtggac gataagcacc gtaaacggct ctgcgtcatt ccggagttta
    15181 tgaggcacta aggcgaacat aagagatgga atgagcatct actcgtttat tatgccacag
    15241 agaatcggga aataacatcc cttaacactt gttatgagat aattctgtaa tcctctttgc
    15301 ttcctgagta ataacttcct gagtgaatat ttaacctgag cttgatccta cacatactta
    15361 ttatgaatga taaaattcat tcaattaata acacatatat taattgccgt taaaactaaa
    15421 aaagcatcaa taatcaacgc gatataataa acctgcctta catatcaact gcgccagagg
    15481 taggattgaa aacgctctcc tgattttcca attcattttc tggataaata aataatttat
    15541 ttttgtcact attatttatg taatcatcct gtcagggaga gggatctcaa ttatcaatgc
    15601 ttaattacgt catcattttg atgacatgaa accggagcat tttgcatgga attttcgttt
    15661 tcacccaaac ttcttgttgt tgctgtcgcc gccgctcttc ctctcatggc cagcgcagca
    15721 gataccccgt caactgccac cgcacgcaaa ggctttgccg gatacgatca cccaaaccag
    15781 tatccacaga acgctgcaat ttattgaatt tgcacgatca tgtaggccgg ataaggcgtt
    15841 tacgccgcat ccggcaatca accgcaggcg gccacaaaat ggccgctatt ttacttattc
    15901 accaccagca aatgtgcctg cataatgtca ctggccgggc gaccgtgcgc cagcaaatca
    15961 gccattgctt taagatatgg cggtagatgg cggaaataac gctgataccc ggcacacaaa
    16021 taattcagcc ccggtttgcc gctggcatcg agcatgaagc ggtgtttcgg gcagcctccc
    16081 cagcacgctt ttaacacgtt acaactgcga cactgcgccg gtaattgctt aaatttatct
    16141 tcaccaaaca cctgctgttg cggggaatcg atcatttctg caattgtttg ctgatgcata
    16201 ttccccagcc gatattgcgg ataaacatag tgatcgcagg cgtaaacgtc gccgttgtgc
    16261 tcaacaatca ccgagcgccc acaggttggc tgatgatggc aaaccgcacc cggcgcaccg
    16321 acaaaattgg caaacgccca ttcgatattc atcacgaaaa tcttgccgac gtcgcgtttg
    16381 atccagtggt caaaaatcgc caccagaaat tcaccaaatt catcggggcg cacagaccat
    16441 tccgtcagtt ccccctgaat atcaccaggc gcatgtagtt tcagtccatc gctggcagct
    16501 gtttcatcag ccaggcgctc gaccaccgga ataaactgga tgaattcgac tcccgcatcg
    16561 cacaaaaaat cataaacctg caacggttgc tgcgcgctgg tgcggttgac gcagaccagc
    16621 acgttatagt cgacatgatg tttttgcagc agcgtcaggg cacgcatcac cagcttatgc
    16681 gttggtctgc cacctttggt cacgcgatat tgattgtgga tctcagccgg accgtccagc
    16741 gataacccaa caagaaaatg attttctgcc agaaatgcac accatttatc atcgagcagc
    16801 acgccgttag tctggaagct gttacttatc ttcctgccag caccgtattt cgcctgtaac
    16861 tttacggcac ggcggtaaaa atccagcccg agtaacgttg gttcgccgcc ctgccaggta
    16921 aaagccactt cgttttgcgg ttcgctggca gcgatatagt gacggacata cgcttccagc
    16981 gtgtcatcgt ccatatgcgt gactggcttt tcgcggtaaa gggattgttt ttcgagataa
    17041 aaacagtagt cacagttcag attacaatcg gaaccactcg gtttcgccat cacatgaaaa
    17101 gcacgcgttg gaacctgttg cagcatggtc actccttgcc tgaagtcatc cttcaatacg
    17161 ttaagggcga aatcataccg tggggcaatg agttattacg ggcgtttatt gcgaagagag
    17221 ggtgacgaaa tgcacagaaa acaaaaaacc ccgccgaagc ggggttcaaa attggtcggc
    17281 gagagaggat tcgaacctcc gacccactgg tcccaaacca gttgcgctac caagctgcgc
    17341 tactcgccga aatactgctt tttgaatttt tagttcaatt atttaaagtc gtggtgcgag
    17401 gggggggact tgaaccccca cgtccgtaag gacactaaca cctgaagcta gcgcgtctac
    17461 caattccgcc accttcgcat tgtcacaact tctaataatg gggtggctaa tgggattcga
    17521 acccacgaca actggaatca caatccaggg ctctaccaac tgagctatag ccaccactac
    17581 aaatcttgtt acgcggtatt actaccaccg cagctcaagc gccgggacta aatggcgcgc
    17641 ccgacaggat tcgaacctga gacctctgcc tccggagggc agcgctctat ccagctgagc
    17701 tacgggcgct tagcgccgtt gcgggggtgg ataatacgga cttcccaccc ctctgtctag
    17761 tcccttttta aataaattgc gcgtttggtt acggtttgtg cgttttgctg cttattcctc
    17821 cagtttatgc gctttcccgt ggcgattaag gccaaaaact ttataaatcg ccgtcaccgc
    17881 cagcataaag atgatgccaa caaacagcga catacgcgta tcttcattaa agtacatgcc
    17941 gatcaaaacg caaatcagga atgccattgt tacgtagttg gcccacggga acaggattga
    18001 gcggaacgga tggctggcaa tcgccgcttt atgtgcacgc cgaaaacgca gctggcttat
    18061 caatatcaca aaccatggca ccatccccgg aagcacgctg gcactgtaga cgtagacaaa
    18121 cacacgctgc ggattgggaa tgatgtagtt caggcatgag ccaattagca gaatagcaat
    18181 agatactgcc acacccgcaa ctggtacgcc gtgacgggaa actttcgcca tcgccgccgg
    18241 taactgacgg tttttcgcca gtgcgtagag catacgtccg caactgtaca tgccgctgtt
    18301 acagccagag agcgcagccg tcagcaccac aaagttgata atgcccgccg ctgcggtaat
    18361 accgattttg gcaaaagtca gtacgaacgg gctgccgttg ctgccacttt cattccacgg
    18421 gaagatggtg acgataacga aaatcgcgcc tacgtagaaa atcaggatcc gccacagcac
    18481 tttgcctacg gcactgcgca acgtcacctg cggattcttc gcttcaccgg cagtaatgcc
    18541 aatcagctcc acgccctggt aggacgccac cacaatacac agcgcggtca ggaacccttt
    18601 ccagccaccc gcaaagaaac cgccatgctc tgtgagattg ctaaaaccaa tcgactgccc
    18661 gccattgcca aagccaaaga aaatcacgcc caggccaatg acaatcatca cgataatcgt
    18721 ggtgactttg atcatcgcga accagaactc gatttcgccg tacaaccgca ccgccgccag
    18781 attcgccaac gccaccagcg ccactgcgat caatgcgggt atccactgcg ccatctccgg
    18841 gaaccagaac tggacataaa cgccaacggc ggtgatttct gagatcccca ccgccatcca
    18901 cataaaccaa taagaccagg cggtgagata accaaagaac gggctcatat aacgatgcgc
    18961 ataaacggcg aacgaaccgg taaccggttc gaggaacaac atttcgccca ttgaacgcat
    19021 gatgaaaaag acgaatagcc cggcgatgat ataggccaac aatacggatg gcccggccca
    19081 tttcaaggta ctggcggccc ccataaacag gccgacgcca atggtgcccc ccagggcgat
    19141 gagttcgata tgtcgagctt ccagcccacg ctgtagctct ggtttgttat ctgccataaa
    19201 tcctcgtgtt gtgtttgcat gctttccggt gttaccggtt atcgttatgg gtacatcgag
    19261 tgttgcgaat gttttcgtaa ttcaggagaa atggcaaata aagcattaaa aatttgaatg
    19321 ctttgtgtaa taaaaaagca gacaggcgac ggagtgacca ctccgtcgct ttacaaagag
    19381 aggaaaatca gaggttgccg gtgtagtgcc agcgtaaata acgcagcaaa cgaagctgac
    19441 gcttaatgcg gctcggctgc gaaagcaggc ggtagagcca ctccagtccc agcgtttgcc
    19501 agattttcgg tgcgcgtttt acgtgaccgg tgaaaacatc gtaagtcccg ccaacgccca
    19561 tatacagcgc atctggatgc accagacggc agtcgcgcat gaagatctcc tgctttggcg
    19621 atcccatcgc aacggtgacg atttgcgctc cgctggcatg aatgcgttca aacagcgcct
    19681 gacgctgctc gggtttaaaa taaccatcct gactgccaac gatattcaca ttccactggt
    19741 tgcgcagttt agcttcagtt tgcgccagca cttcaggttt accgcccaca agaaataccg
    19801 gcgtcccttc tttgcctgcg cgcgccatca gctcttccca gagatcggca ccggcaacgc
    19861 gggaaacctg cgcctgcggg tactttttac gtactgaacg tacaacgctg atgccatccg
    19921 catatttaaa ttcggcagcg ttaattaact ccctgacctc ggcgttatct tcaatggtca
    19981 gcattttttc agcattaatg gcaaccagcg ttccctgctt aagctgcccg tcagcaaaca
    20041 gataatcgag ggcgtgctgc atatcacgcc aaccaatcaa ctgtaagcca cgcagcgtat
    20101 aggtcggtgc cgtggtgttg ttattcattg ttatccttca acctgcgtcc ggagcgatga
    20161 ttttgtacgt ttatgaatga gtccggcgct ttcaaaaagc cagtacaaca gttttgcgat
    20221 catcagacat gcgccgaaga ccacgataaa aaagactacg cgtgagacaa acgaatccag
    20281 cccttcacgt gccagcacga tcatattgaa gatcgcccca aagcagaaac tgtgcaatat
    20341 cgcagcctta tagcgattag gctcgcggtt gcccagctca tacagccagt cgaaccattt
    20401 gatgatcaga ccaaccacga tcgccccgag cgggatgaac aacgcgccgc ccatcaccac
    20461 cagtgagcct ataagcgtag gcgagatcgc cagtccggag tggttattca gcacttccct
    20521 ggtaaagtag ttggctgagt tcagcaccat actcgggcga cccggccaca gccaggaagg
    20581 gataaagaca tagaaatcgc ggacaattgg agccaggccc tggaagtcga tgttgtcgta
    20641 gttctgcaac agcaacgcca gattctccca cggcgagaag gtgtcgcgag tgagatagag
    20701 aaacgtatag aacgcttcat cgccgctcac attcattcca tagcgtttta gcgccagcca
    20761 gaacatgccc acaatcccca gcacgcccgc cgccgccagc atccacaacg aaatccagcc
    20821 gcgaataatg ccaataaaca ggaagatagc gaatgcgatg atgatattgg cgcgagtgcc
    20881 gccgacaatc atataagtca gcaagccaaa ggcgaccgtg ctgacgagga aaaacagcca
    20941 cgctttgcta tcctggcgca gaaagtagac caccagcatc gccgggatga aaaagtaaaa
    21001 gaagcgtttt aacgccacgc cggagacttc actggagaag atctgactgt aggagttaag
    21061 ccggaacagc aaaaagccgt tgtgcatgaa gaagatgccg acgcttacca gcgcgatgcc
    21121 catcaggatc acccacgtaa gattggtctc cacgcggttc atggtaaaca gcggacggcg
    21181 cggtacatca gcaacgcgtt tgcgtaggcg ggttttgtag gtgacatagt aaaccgcgta
    21241 gaagcagccc gcagaaagca acgcctgcaa caagatttct ggcggcgcga caccaacatc
    21301 aaagcgaaat accagcacgc tggtcagcgg gaagccgaag aaaaaggtga gcaaaaacag
    21361 caatgaaaag aagacattga agttaaagcg cacacggcga aactcaaacc aagtcagcgt
    21421 ggcaataaac agcgtgcaga gcagccagac cacaaacagg ccactgaatt gcagcagact
    21481 catgcgacct ccccggcggc aatcgccaac acccgctgcc agccttgtag atagttaggg
    21541 ctaaagaagg caatggtgtt tttatccacc gacgccaact ggcgctgcgc ttcacgcaca
    21601 atatcctcgt tgagatcgtc ggtagtaaac agcaccggca aatgctgttc cgtcatatcc
    21661 tgccagaacg gattttcccg gttaagcaca caaggaatgc ccgcctgaat cagtaagcaa
    21721 agcgtaccaa tgccctgctg gcgggcaaaa ataaagtaac caagatcgca ctgacgaagt
    21781 agcgccagat aggcgtcaaa ttccagtttt tcgctcaaaa tttgcagatt ttcttcgctg
    21841 aataactcca gccccgcctg acgaacttcc tcaatgtacg cttcgttatt aggcggatat
    21901 cccatcggca ccaccacttt taccgtatcg ccaaattgct gatgaacggc gcgcaaggca
    21961 gcaatatggt cattgctgcg gtcaccggag ttccccacca gaatggtcat tttcccttca
    22021 cgttgccgat cgttcgccat cgtattgaga gaagggtcca tccgcgtcgg gaagtacagc
    22081 agttcgcccc gcacctttgg atgcgttttg gcaaaaaagc tcaaatcacc gcgggtggca
    22141 aatacacagc cgactcgctt ttgcgccagg cgacgtagcg ggtaaaaaag cttatatctc
    22201 aagccactgg aaagctcata caggtctgcc ccccagatat gccagaaaaa ctggctgggc
    22261 ttaatgccac cactcagcag agccagccac agtgtgggat tgaactgacc gtggaaaaaa
    22321 aatcgctgct gacggttagc ttttgctttc gcgatgaccg cttccgccag cgattttttc
    22381 ccagggaaaa attgcacaga aagcgccgga cagctatcac ttaagccgtc gtccttgcca
    22441 acaaccataa actcgcgcgc gtgctcgctc gtcgcggcca gcgcgtcatt gaaaaaccgc
    22501 aaaacggttc ggttatggtg agggatatcc gatcccagta cgtgaatcag tacagtcatg
    22561 cccgcctacg ccagagtaaa aacacgccac aacaaagaga aaaatagacg atataagttg
    22621 ccatatatgc ctgcgccgcg cccagtgcac catgcgcagg gattagccag tgggcaaata
    22681 ccatcaataa agtgaactgg ctgacttccg ccagaatata aaaccgcagt gacgctttgg
    22741 cgatcaccag ataaccaaag acataagcgc ccacttttag cacatcaccc actaactgcc
    22801 aggcaaagag atcgcgcata gcggtaaatt tattcgacaa cagcaaccag atagcaaaat
    22861 cacgcagcaa ccagacggta aaactcgccg ccgccactgc cggtaagacg aattttagcg
    22921 atttaaccac ttcccgggtg atatcgcgct tttccgttag ccgcgacaac gtgggcagca
    22981 aatatacgct gaacgatgcc gtaatgaatt gcaggtaggc atcggaaata ctgctcaccc
    23041 cttgccagat ccccacttca tcccagctat actgcgccgc cagcagttta cgcatcatga
    23101 tgtaagcaac aggcaaggtc accgacgtaa tcaacgccat gagcgtaaat ttgctcaact
    23161 gccctgccag accgttatcc cagctgggtt tcagatagct taacgggatg acaccacgtt
    23221 tgatcaacat gatggcggca ggaattacca ccagcgcggg aatcagcgcc agacccagca
    23281 acgccccttc ataaccgccc aaacggtaac tgacgtagta cgcgagaacg ccaatcaagc
    23341 tgccgacaat cagcgataac gcattacctg cggcatcgcg aaagcctttc atcagcgcca
    23401 gtaacaggtt gccccaggcg atccccattt gcaccagcgc cactaaacgc accagcccct
    23461 gatagtcggt attaccaaac aatccctggc tgattggcgc agctgccagc acaaaaacca
    23521 gcgccatcag cgtagagaaa ccaagtacca tcgctgatga agtgccgacc acgcggcgca
    23581 gctgttgcgg attatcatgg tactgggcaa cgtatttggt tacaccgtta aagatgccag
    23641 ccccggcaag cacgccgagc acggtaatca actggcggaa atttgccgcc agcccaagcc
    23701 ccgccggacc aaatgacacc gccagcaact taccgaccag taacccggca ccaatcttga
    23761 ccagtgtact ggccgccgtc cacaaggacg cttttgccaa cgacatatca ggagaagtag
    23821 ttcaacaaag tcgcaattac cgtacgctga ttgacgggcg acaggttgta gaacagcggc
    23881 aggcgcagca ggcgctcgct ctctttggtg gtgtagcgat cttcaccgtg gaactcacca
    23941 aagtgttccc ccgcagggca accgtgcagc ggaatgtaat gaaacaccgc catgatttcc
    24001 gcttctttca gaaagttaat caacgcgctc cggtcatcaa tatcccgcag tttaatgtag
    24061 aacatatgcg cgttctgcac gcagccatca ggaatcgacg gcagctcgat acgcccggct
    24121 ttcgccagag gcgctaacgc atcgtagtaa ttttgccaca gcgccagacg ttgctggttg
    24181 atacgatccg ctgcttccag ttgcgcccac aggtatgcag cttgcagatc ggacatcaaa
    24241 tagctggagc caatatcgcg ccaggtatat ttatcgacct gaccacggaa gaactggctg
    24301 cggttagtgc ccttttcacg gatgatctcg gctcgttcga ttaacgcttt atcgttaatc
    24361 agcgtcgcgc cgccttcacc acccgccgtg tagtttttgg tttcatggaa gctaaagcag
    24421 ccaatatgac caatggttcc cagtgcacgc cctttgtaag tggacatcac gccctgagcg
    24481 gcatcttcca ccacaaacaa attatgcttt ttcgccaacg ccataatggt gtccatttcg
    24541 caggccacac ccgcgtaatg gaccggcacg ataacgcgcg ttttgtcggt gatcgctgct
    24601 tcaatcaacg tttcgtcgat gttcatggtg tccgggcgaa catccacaaa gacgattttc
    24661 gcgccacgca gcacaaaggc attggcggtg gagacaaagg tgtagctcgg catgatcact
    24721 tcatcgccag gctggatatc gagcagcagc gccgccatct ccagcgaagc ggtgcaggac
    24781 ggcgtcagta acactttggc gctgccaaaa cgttgctcca gccactgctg gcagcgacgg
    24841 gtaaaaccgc catcgccaca cagtttgccg ctacccattg ccgactgcat atagtcgagt
    24901 tcggttccca ccaccggcgg tgcgttaaat ggaatcatgt gatcacctgt ataaccagta
    24961 cgcggtgctt tctacattcg caccactttg tatgtatcgt ttaagcgcgg cggtgttgcc
    25021 catttgggtc gccacccgca aagttgtttt accgcgagca tacgcccagt ttagcgccgt
    25081 ttgcatcagc tcagcacctg caccgcgtcc agccagcagg ccaattcgcg catctgtcgc
    25141 attgagttcc cgtaaagaga catagccgcg aatatcgccg gacgccgcac gtagaatcag
    25201 acattgatga tcaaaggtgc cgcgcacggc attttcaatc cactgtgcat aaaagcgacc
    25261 gctggcgtca ggcgcatacc acggcgcacg aaaacggctt tgcgcaaatg cggcgctagc
    25321 taactgacgt aatgcgggaa tatcggtctc ttgtgccacg acagcaccgc tatcactgac
    25381 attgttcacg ggtagcgcca aatcaacttc accttctacc agggagaatc ccagctgttg
    25441 cagggcatcc agttcacccg tatttgatgc cgcaattttg gcctgcaccc gtgaccacgg
    25501 cgctaacgcg tctggcgtca ggagcggtgc ttcagacgta atgcgcacga tggcgctgtt
    25561 aacaccaaag aaggcgtttt cccaggttag tggctcaata ctggcgcgga cgggcacgaa
    25621 gtaactccag cagatattgg ccgtagccag ttttcgctaa tgaactggca gcacgcttca
    25681 caccctcgtc atcgagccag ccgttacgcc aggcgatctc ttccaggcag gcaatcttaa
    25741 agccctggcg tttttctact gtctgcacaa aggtactggc ttcaatcagg ctgtcgtgag
    25801 tgccagtgtc cagccaggca aatccgcgcc cgagcagttc aacggtcagg ttgcccgcct
    25861 cgaggtacat ctggttgatg gaggtaatct ccagttcacc acgctccgac ggcttcacct
    25921 gctttgcgta ctccacgact ttactgtcgt agaaataaag cccggtcacc gcccagtttg
    25981 acttcggctg ttttggcttt tcttccagcg agatagcgcg gaaattgtcg tcaaactcca
    26041 ccacgccaaa gcgttcctgg tccatcacct gatagccaaa taccgtcgcc ccttccgtgc
    26101 gcgccgcaac atgacgcagc ttcggactga agccctgacc gaagaagatg ttatcgccca
    26161 gcaccagaca agaaggttca ccgttgagga aggtttcacc gatgataaag gcctgcacca
    26221 gaccgtccgg gctgggctgt tcggcgtatt ccagctggat accgaactca ctaccatcgc
    26281 ccagcaggcg ctggaaataa cctttatctt ccggcgtagt gatgatgaga atttcgcgga
    26341 taccggccaa catcagcacc gacagcggat agtaaatcat tggcttatcg taaatcggca
    26401 acagttgctt cgatacgccg cgcgtaatcg gatgcaatcg ggtgccggaa ccgcccgcca
    26461 ggataatacc tttcatgttt gcctccgctg aaaattagcc tttcagacct aaacgctcgc
    26521 cctgatagct gccgtcctgc acctgcttcc accagctttc attagccaga taccactgca
    26581 ccgttttacg cattccactt tcaaaggttt cctgtggcag ccagccaagt tcacgggcaa
    26641 ttttcgaagc atcaatggca taacgcagat catgccccgg acggtcagcg acaaaggtga
    26701 tcaagtcacg atagtgcacc acgccgtgcg gcttgttcgg agccagttct tccagcagct
    26761 cgcaaatggt ttccacaaca tcgagattct tacgctcgtt gtgaccacca atattatagg
    26821 tttcaccgac tttcccggtg gtcgccacgc aatacagcgc gcgggcgtga tcttccacat
    26881 acagccagtc acggatttgc tgcccgttgc catataccgg cagcggttta cccgccagcg
    26941 cgttgaggat catcagcggg atcagttttt ccggaaagtg gtaaggaccg tagttattcg
    27001 agcagttggt gataagcgtc ggcagaccgt aggtccgcag ccaggcgcgc accagatggt
    27061 cgctgctggc ttttgacgcg gaataagggc tgctcggcgc atacggcgtg gtttcggtga
    27121 agaaatcatc cgtcgagtgc aggtcaccat atacttcgtc ggtggagata tgatgaaaac
    27181 ggaacgctga ttttttatct tccgtcagcg tattccagta agcccgcgcc gcttcaagca
    27241 atgtataagt cccgacaatg ttggtttcaa taaacgctgc cgggccgtca atagaacggt
    27301 caacatggct ttcggctgcc agatgcatga cacagtctgg ctgatgctca gtgaatacgc
    27361 gtgccagttc tgcccgatcg cagatatcaa ctttctcaaa ggcaaagcga tcgctttgcg
    27421 cgaccggtgc cagcgacatc aggtttccgg cgtaggtcag cttatcgacc actaccaccg
    27481 cgtcgctcgt ttcgttgatg atataacgca ccagcgccga gccaataaac ccggcaccac
    27541 ctgttatcag aatttttctc atcagcgcca gactcctttg gcatcgacga catactgctg
    27601 atggacattg tcgccattga taactttaaa ctgactatga tcgaccagca tcaccagcac
    27661 gtctgccgtt gccagcgcct cgtcaagctg cgccagagta caaagcccgg tcagtttttt
    27721 cggcaactgg tggatgttag gctcaacaac cagagtttcg ccgctatgcc actgggcgat
    27781 cagttcagcg atttccatcg ccgggctttc gcgcaggtca tcaatattcg gtttaaacgc
    27841 cagaccaaag caggcgattt tcagttcact ggcgcgttta tcggtagccg ccaggcaatc
    27901 agccaccgcc gctttcacct gatcgataac ccagaacggt ttgtgatcgt tcacttcgcg
    27961 cgcggtacgg ataagccgcg cctgctgggg gttctgtgcc acgataaacc acggatcaac
    28021 agcaatgcag tgaccgccca cgccagggcc aggctgaaga atattaacgc gagggtgacg
    28081 attcgccagg cgaatcagtt cccagacgtt aatcccctga tcggcacaaa tcagcgacaa
    28141 ttcattagca aaagcgatat tcacatcgcg gaagctgttt tcggtgagct tacacatttc
    28201 cgccgtccgc gagttagtga cgacacactc accttcgagg aaaattttgt acagttcgct
    28261 ggcgcgggtc gaacaaaccg gcgtcatacc accaatcacg cgatcgtttt taatcagctc
    28321 gaccataacc tggcccggta acacgcgttc cgggcagtaa gcaatgttga cgtccgcctg
    28381 ctcgcccacc tgctgtggga aagtgagatc cggacgcatc tctgctaacc attctgccat
    28441 cttctcggtt gaccccaccg gcgaggtgga ttcaaggatc accagcgcgc cttttttcag
    28501 cactggcgca atggagcgag cagccgattc aacgtaggtc atatctggct catgatcgcc
    28561 tttaaacggc gtgggtacag caatcagcca ggcatccgct tcaactggcg tcgtgctcgc
    28621 tcgtaaaaaa ccgccttcta cggcagtttt tactacgctc gccaaatcag gctcgacgat
    28681 atggatttcg ccacgattga tggtatcaac cgcgtgttgg ttgatatcga caccaatcac
    28741 ctgtttttgc cgtgaggcaa acgctgctgc tgtaggcagc ccgatgtaac ccagtccgat
    28801 aacagaaatg gtcgcaaaac tcatagtgat atccgattat tttttaacgc ttccagaatg
    28861 cgagagcatg cctgaccatc accatacggg ttatgggcgc ggctcatagt ttgatattcg
    28921 ttttcgtctt ttaaaagacg cgtcacttcc tcgacaattc gctgcttatc cgtgcctacc
    28981 agacgcaccg tacccgccgt caccgcttcc ggacgctcag tggtatcgcg catcaccagc
    29041 accggtttcc ccagcgaagg cgcttcttcc tgaatgccgc ctgagtcggt caaaatcagc
    29101 caggcgtggt tcatcaacca gacaaacggt aaatactcct ggggatcgat cagaatgaca
    29161 tttttcacat gccccagaat gcgattgacc ggctctctga cgttcgggtt gagatgcacc
    29221 ggatagacaa tctggatgtc ctggtgcgtg gtggcaatgt ctgccaacgc gtggcagatt
    29281 tcttcaaaac cacgaccgaa actctcacgc ctgtgaccgg tcaccagaat catcttttta
    29341 ttggggtcga taaacgggta atttgccacc agttctgaac gcagcgtgtc gctgctcatc
    29401 acctgatcac gcacccataa cagtgcatca atgactgtat taccagtaat gaagattcgg
    29461 ctatccgcaa cgttttcacg cagcaagttt tgccgggaag tttcggttgg agagaagtga
    29521 tacatcgcca gatgcccggt caatgtacgg ttagcctctt ccggccacgg cgaatagaga
    29581 tcgcccgtgc gtaaaccagc ctcaacgtga ccaacaggaa tacgctgata aaacgccgcc
    29641 aggctggttg ccagcgtcgt tgttgtgtcg ccgtgaacca gcacgacgtc tggtttgaac
    29701 tcggcaagaa taggttttag cccttccaga atccgacagg ttatctctgt caggccctgt
    29761 cctggctgca ttatgttgag atcgtagtca ggtacaatgg aaaagagttt cagcacctga
    29821 tcgagcatct cccgatgctg cgcagtgacg caaactttag cctcaaaaaa aggagctttt
    29881 gccaacgcat gcaccaacgg agccatcttg atggcttccg ggcgcgtacc aaatacagtc
    29941 agtactttca catcgattct cttcgaataa gcggcgagcg cctttgcgct cgccgcagca
    30001 gtgttgctat ttcgagcaac ggcgggttaa tgcgacacca gccccgatca gccccccgac
    30061 aatgccccac ataatcatca ggaaggcacg acgtgggcta tcgcgtttta ccggttcttc
    30121 cggcgtacgc aaatagcgat aggtctgaaa acgcggatcc agggttggac caacattcag
    30181 ggtgtttaac atggcccgat tctgatcata gtcgagatca aaggccggac cgacggcctg
    30241 taaattttcc agtcgagcct ggagcattgg acgcccaagc aggaacattt ctgaatcagg
    30301 taattcctcg gcaggcacat ctgtcgcact gcgcgaaata ttatgctgct cagcaatttt
    30361 cagcgcctgc tcaatgctgt tcatccggcg gtcgtagatg gctttcgcca cctcttcctg
    30421 acgcttcacc tgagctttca tctggatggt gcgtgccgcc catgcgcctt tcagctcatc
    30481 attcagatgg ctggctgcac gctggctggc aaaagcaaca tactgacgta acaggttatt
    30541 agcgtcaggc gcggtttcgg caataagctt cacgctgtca ttgaccgcgc gggtaaagtc
    30601 tccggggata aactggatgt tgttaatcat ttcatccagc aacgccgcat cggctttgct
    30661 gttgcccacc atccgctgtt tgtaatagtc ggtttgcagc cagaactctc tgcgggtatc
    30721 ccacgaggcc agttgcataa caaactcttt ataggcttcg tccatgaccg atggttgatc
    30781 ggcagaagcc atgtttgaac ggacatccag gttacgcaaa aattgctgct gcgagtaata
    30841 tccccccagc atattcaccg ttggacgatc ggtaatcgcc gtcgagctcc actcctgacg
    30901 agcaaaaaaa gtatacgcca gcgcgattaa cgcaaacgcc agccccatgc caataatcca
    30961 tagcttccca gcccacaagg tacgaaacaa cccacgaata tccagttcat tttcagcgtc
    31021 ttcggtcggt ttcccaggca ttggttgtgt catcacatcc tcatttattt ggttaaattg
    31081 gggctgccac cacgatttct acgcagtctg cgttttacgc gcttaataaa gcgagcaact
    31141 ttccaggcac gcttaatgca atatccatag aggaagaatg ctagcaaaaa gagcaccagc
    31201 atgacccact ccgggacaaa atgagaatat tctgccagca cgccaatgga agcgagcagt
    31261 gctgcggcaa gggtaatcag cacaaacgcc tgacgggaag taaacccggc acgcatgatc
    31321 aaatggtgaa tatgctgacg gtcaggagag aatgggctca tgcctttacg caggcgacgg
    31381 tacataatcg ccaccatatc cattagcgga atggcgatta tccacaaagc ggtaaccggg
    31441 ctgatgggat gggttttgcc ctgggtcgtt tcgagcagga tccagataac ggtaaaacca
    31501 atcagcgtac tgcccgcatc acccataaag actttgtagc ggcgacccag gataccaagg
    31561 ttaagcatga tgtatggcag gatggcggcg atcatcgcaa agcaccagat tgcgaggctg
    31621 gtttgcccgt cgaaccacaa aatcataccg attgctgcaa acgagacgca ggacaacccg
    31681 cccagcaagc catcaatgcc atcaaccatg ttgaacgcat taatggccgc ccagacggca
    31741 aatagcgtca ggaagtaacc aaacggtccg agcgccatct cccaggagcc aaagatataa
    31801 cccaggctac tgagataaag tttgccgaac accatcataa caatgccaac agcggcctgt
    31861 atggtggcac ggatttttac gctgatatca aaacggtcat ccagcgcgcc aatgaaaaca
    31921 agcacaccgg cacaagcgag atagagagat gcatgcggaa tatagtaatc gacaattccg
    31981 aacgtgaagc aaatccctgc gtaaaccgaa atccccccaa cgagaggtat caatccctgg
    32041 tgacgtttgc ggaagtttgg tttatccact aaaccgactt tttttgccac cttacgggca
    32101 aaaaacagaa acagtgtcgt gaataaaaaa atactgatga gatcagtact cactgtcagt
    32161 aaattcacaa tgcatgctct cagagaaaat tattagcaga agtataacca cgaagacctt
    32221 tattcagaag ggaaagtccg ttccgaaccc accagtcctg tgcaaaaatt aaccatttga
    32281 tatgcaaatt gcataacatg ccagcaaatt ccaggaattt tcctaacatc gccagcgcgg
    32341 cattaagatt acagatataa aagcaaaacg ccacgtaaac acgtggcgtt tttggcataa
    32401 gacaaattta tgagcgtttc atcatttcga agaaatcgtc attggtcttg gtcatggcca
    32461 gtttattaat gaggaattcc attgcatcga tttcgcccat cgggtgaatg attttgcgca
    32521 ggatccacat tttctgcagt tcttcctgag tcgtgagcag ctcttcttta cgggtaccgg
    32581 aacggttgta gtcgatagcc gggaagacgc gtttttcagc gatcttacga gagaggtgca
    32641 gttccatgtt gcctgtacct ttaaactctt cgtaaataac ttcgtccatt ttagaaccgg
    32701 tatcgataag cgccgtcgcg ataatggtca ggctgccgcc ctcttccacg ttacgcgccg
    32761 caccgaagaa gcgtttcgga cgatgaaggg cattggcgtc cacaccaccg gtcaacactt
    32821 tacctgacgc cggaacaaca gtgttgtaag cgcgcgccag acgagtgatg gagtcgagca
    32881 gaatgataac gtctttcttg tgctcaacca ggcgtttggc cttctcgatc accatttccg
    32941 caacctgaac gtggcgagat gcgggttcgt caaaggtaga agcaacaact tcacctttta
    33001 ccagacgctg catctcggtt acttcttccg gacgttcgtc gatcagcaga accatcagca
    33061 cacaatccgg gtggttgtaa gcaatgctct gagcaatgtt ctgcagcagc atagttttac
    33121 cggctttcgg cggtgccaca atcagaccac gctgaccacg accgataggt gatgccagat
    33181 ccagtacgcg agcggttaaa tcttccgtag aaccgttacc acgttccata cgcagacgag
    33241 agtttgcgtg cagcggggtt aagttctcaa agaggatttt gttgcgggcg ttttcaggtt
    33301 tgtcgaagtt aacttcgtta actttcagca gcgcaaaata gcgttcacct tctttcggcg
    33361 ggcgaatctt accagagatg gtatcaccag tgcggaggtt gaaacggcgg atttggctag
    33421 gggaaacgta gatgtcatca ggaccggcga ggtaggagct gtctgcggaa cggaggaaac
    33481 caaatccatc ctgcaatatc tccagtacgc catcaccaaa gatatcttcg ccactctttg
    33541 cgtgctgctt caggatggca aaaataatgt cctgcttacg catacgagcc aggttttcca
    33601 gccccatatt ttcgccgaga gtgatcagct cagaaaccgg cgtattcttt aattcggtaa
    33661 gattcatagt ggtgtgagtt cttaaacttg gggtaaatct cgaacttaat gttgtgaatg
    33721 gtatggcagg atcatccatg cctgtttacg gtcatcgact catgtctttt cgctgcctgg
    33781 tcacaggaga gtacgcagaa ctgaaacgac aagacggatt gagtgacgag ccagaaatct
    33841 gttcacttcg catttaagat aaaacgggaa gcgttggaaa ttacaagatt caaacttaat
    33901 aaggtatgtt taatacgaag tcaacactaa gttagcatga ctcacgccgg gcgtccagtt
    33961 tttagcgacg gggcacccga acatgaaatt cccttacgcc aggttagcgt cgaggaactc
    34021 tttcaactga cctttagaca gtgcacccac tttggttgcc gccacttcac cgtttttgaa
    34081 cagcagcaga gtcgggatac cacggatgcc atatttcggc gcagtgccag ggttttgatc
    34141 gatgttcagt tttgcaacgg tcagtttgcc ctgatattcg tcagcgattt catccagaat
    34201 cggggcgatc attttgcacg gaccgcacca ctctgcccag aaatcgacga ggatcgcccc
    34261 gtccgctttg agtacatccg tgtcaaaact gtcgtcagtc aggtgaataa ttttatcgct
    34321 catatataac tccacaggaa taagcctggc gtgttggttt cgttgttggt gtaacattaa
    34381 ccaactaaag gttgacttta tttcaccgga tacgctttcg taaagcaata gtaagctgat
    34441 attctaccac actatgagca aaacacattt aacagaacag aagttttccg acttcgccct
    34501 gcatccgaag gttgtagaag tccttgaaaa aaaagggttt cataactgta cgcccattca
    34561 ggcactggcc cttccgctga cgctggcggg tcgtgacgta gccgggcagg cgcaaaccgg
    34621 taccgggaaa acgatggcgt ttcttacgtc aacgtttcat tatcttctct ctcatcctgc
    34681 gattgccgat cgcaaggtga atcaaccacg tgccttaatt atggcaccga cgcgtgaact
    34741 tgccgtgcag atccatgccg acgcagaacc gctggcggaa gctaccggcc tgaagctggg
    34801 tctggcttac ggtggtgatg gctacgacaa acagctgaaa gtgctggaaa gcggcgttga
    34861 cattctgatt ggcactacgg ggcgtttaat tgactacgcc aagcagaacc acattaacct
    34921 cggtgccatt caggtggtgg tactggacga agccgatcgc atgtacgatc tgggctttat
    34981 taaagatatc cgctggctgt tccgccgtat gccgcctgca aaccagcgcc tcaacatgct
    35041 gttctccgcc acgctttcgt accgggtacg tgaactggcg ttcgagcaga tgaacaatgc
    35101 cgaatatatt gaagtggaac cggaacagaa aacgggccac cgtattaaag aagagctttt
    35161 ctacccttct aacgaagaaa aaatgcgttt gctgcaaacg ctgatcgaag aagagtggcc
    35221 agacagagcg attattttcg ccaataccaa acaccgttgt gaagagatct ggggccacct
    35281 ggcggcagat ggtcatcgtg tcggtttgtt gacaggcgat gtcgcgcaga aaaaacgtct
    35341 gcgtattctt gatgaattta cccgtggcga tctggatatt ctggttgcca ccgacgttgc
    35401 cgcgcgtggt ttgcatattc cggcagtgac gcacgtcttt aactacgatt tacccgatga
    35461 ctgtgaagat tacgttcacc gtattggtcg tacaggtcgc gcaggcgcaa gcggtcactc
    35521 tatcagcctg gcgtgtgaag agtatgcatt gaatttgcct gctattgaga cctatattgg
    35581 tcactcaatt ccggtaagca aatacaatcc ggacgcattg atgaccgatc tgccaaaacc
    35641 gctgcgcctc acgcgcccac gtacaggcaa tggtccgcgt cgtactggcg ctccgcgtaa
    35701 tcgtcgtcgt tcaggttaaa taaaatgtca tactcaaaat cattcaaact gtatcaagat
    35761 ggcaagagaa tgaatcccga tgagcatact gtagtaagtg attcaggtga aagaatgcag
    35821 ccaacacaga gacagattga aggatgaaga gtatgggttc cacctcgtcg ctgtatgcag
    35881 ccattgatct cggttcgaat agttttcata tgctggttgt gcgcgaggtg gctggaagca
    35941 tccagacgct gacgcgaata aaacgcaaag tgcgtctggc tgctggcctg aatagcgaaa
    36001 atgccctgtc taatgaagca atggagcgcg gttggcaatg tctgcgcctg tttgctgaac
    36061 gtctgcaaga tatccctccc tcgcaaattc gcgttgtcgc tacggcgaca ttacgtcttg
    36121 ccgtcaatgc gggtgatttt attgccaaag cgcaggaaat cctcggttgt ccggtacagg
    36181 tgatcagcgg tgaagaggaa gcacgtctga tttatcaggg cgttgctcac acaactggcg
    36241 gtgccgatca gcgcctggtg gtggatatag gcggtgccag tactgaactg gtaaccggca
    36301 cgggtgcaca aaccacctcg ttgttcagcc tgtcgatggg ctgcgtcacc tggctggaac
    36361 gctattttgc cgatcgtaat ctggggcagg aaaattttga tgctgcagaa aaagcggcac
    36421 gcgaagtgtt acgtccggtt gccgatgaat tacggtatca cggctggaaa gtgtgcgttg
    36481 gtgcttccgg caccgtgcag gcgttacagg aaatcatgat ggcacagggg atggatgaac
    36541 gcattaccct ggaaaagttg cagcaattga aacagcgagc cattcattgc ggtcggctgg
    36601 aggaactgga gattgacggg ctgacgctgg aacgtgcgtt agtgttcccg agtggtctgg
    36661 cgatcctgat cgccattttt accgaactga atattcagtg tatgaccctg gcgggcggtg
    36721 cgctgcgtga aggcctggtc tacggcatgt tgcatctggc cgtcgagcag gatattcgca
    36781 gccgtacgct gcgtaatatt cagcgccgct ttatgatcga tattgatcag gcgcagcgcg
    36841 tagccaaagt tgcggctaac ttcttcgatc aggtggaaaa ggaatggcat cttgaagcaa
    36901 taagccgcga tttgctcatc agcgcctgtc agcttcatga aatcggcctg agcgttgact
    36961 ttaaacaagc gccgcaacac gctgcttatc tggtgcgtaa tctggatctt cccggtttta
    37021 cccccgcaca gaaaaaattg ctggcgacgc tactgctcaa ccagactaat ccggtcgatc
    37081 tctcatcgct gcatcagcaa aatgccgtac cgccgcgcgt cgcagaacaa ctctgccgtt
    37141 tactccgcct ggccatcatt tttgccagcc gtcgccgtga cgatctcgtg ccagagatga
    37201 cattacaggc taaccatgaa ctgttgacct tgacgcttcc gcaaggttgg ctaacccaac
    37261 atccgctggg taaagagatt attgctcagg aaagccagtg gcagagctat gtccactggc
    37321 cgctggaagt gcattaatga gtaagtgccg gatgcgatgc tgacgcatct tttccggcct
    37381 tgattatttc cctcgttttg ccgccatcat cgctttcaga ttcgccagat ggctttgccc
    37441 tttctgcatc cgttcttcgg cgctgaccac tttgcgctcc tgttcccaaa tcagatcatc
    37501 ctgcggcagc tccagcaaaa agcggctcgg ctccgggcgc accagctcgc cgtactgacg
    37561 gcgttcttta cacagcgtaa aggtcaattc cttctgggcg cgggtaatgc cgacataggc
    37621 cagccgccgc tcctcatcga tattatcttc atcgatgctg ctctggtgcg gcaaaaaccc
    37681 ttcttccata ccgaccatgt agacataagg aaactccagc ccttttgacg cgtgcagagt
    37741 catcagttgc acctgatcca gctcttcttc actctcacca cgctccatca tgtcgcgcaa
    37801 agtaaagcgc gtcaccacct gggtgagcgt catcggctca tccagttcgc tgccttccag
    37861 catctccgtc atccagctaa acagttggtt gacgttcttc atgcgcattt cggcggcttt
    37921 cgggctgggc gatgtttcgt acagccagga ttcataatcc atgccgtgga tcagatcgcg
    37981 caccgcggca atcggctccc gctccgccag acgctggatt tctgccaacc agtgagtaaa
    38041 gcgggtcaat gcttcataac cacgtccgct aagcgtctga ctcaggccca tatcaaagct
    38101 ggcggtaaac atgcttttat tgcgcgtcat cgcccactca cccagctttt tcagcgtcgc
    38161 cgggccaatc tctctcttcg gcgtgttaac gatacgcaga aatgcgctgt catcgtccgg
    38221 gttagtcagc acgcgcagat aagccagcaa gtccttgatt tcaggacgag agaaaaacga
    38281 cgtaccacca gaaattttgt acgggatgcg gttttgcatc aggaattttt caaacactcg
    38341 cgactgatgg ttaccgcgat aaagaatagc gtaatatttg tactgcgttt tattgacgaa
    38401 gtgatgcgca atcagttcac cagtgacgcg ctcggcttca tgttcttcgt tattcgcgct
    38461 taaaacttta agctctgtgc cgtaacccag ttcggagaac agacgcttct caaagacgtg
    38521 cgggttattg gcgatcagga tgttcgccgc tttcaaaata cgtccggaag agcggtagtt
    38581 ctgctcaagc ttaatcacct tcagcgccgg aaaatcctga ctcagcagca ccaggttttg
    38641 tggacgtgcg ccgcgccagg agtagatcga ctggtcgtca tcgcccacca cggtaaagcg
    38701 cgcgcggctg cccaccagca gtttcaccag ttcatactgg ctggtgttgg tgtcctgata
    38761 ctcatccacc agcagatagc gaattttgtt ctgccagcgc tcacggactt cttcattgcg
    38821 ttgcagcagc aacgtcggca ataaaatcag atcatcgaag tcgagaacat tgcacgcttt
    38881 caggtgtgca tcatacagcc cataacaatg ggcaaaaata cggtcccgct caccaatcgc
    38941 actggctgcc gcctgggacg gtgttttgag atcgttcttc cagttagaga tggtcgaaat
    39001 caactgttgc aggagaactt tgtcatcttc aatcagccct tcggtcaact ctttgagcaa
    39061 cgccagctga tcggtatcgt caaacagcga aaagttcgcc ttcatcccca gcgccgcata
    39121 ctcacgcttg atgatatcca gccccagcgt gtggaaggtt gagatcatca gcccacgcgc
    39181 ctctttgcga cccagcgtct gtccgacacg ctctttcatc tcgcgcgccg ccttattggt
    39241 aaaggtcacc gccgcgatat gtcgcgcctg ataaccgcaa ccgcggatca gatgggcgat
    39301 tttattggtg atcacacgag ttttaccgga acccgcgccc gccagcacca ggcaggggcc
    39361 ggtaacgaat tcgacagctt gttgttggcc ggggtttaga cgcataggtg tattgctcaa
    39421 tcttcgaacg gggggaggat tgtagcagaa tcgcatttga atgtgaccgc gtgtaagccg
    39481 ctaaccggtt ggctgcggat gtttaaatca gagagggaag accgaaaccg gagttcatcg
    39541 tgaatccatt agacttagaa aatatcgggt cgtaacgttg tgttattact ttttcagagt
    39601 ttactaagga gaggtgtact cgtggcgatt aatttcagtc ctaaggttgg tgaaatactg
    39661 gaatgcaact ttggtaacta tcctgttagc cagaatggac agttcagcac cacgtattac
    39721 gatggccgca ttcctcctga aatgataaaa aacaggttag t
//
LOCUS       DAJVUP010000017        38855 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.017, whole genome shotgun sequence.
ACCESSION   DAJVUP010000017 DAJVUP010000000
VERSION     DAJVUP010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 38855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38855
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.017"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..789
                     /locus_tag="OQQ75_000848"
     CDS             <1..789
                     /locus_tag="OQQ75_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1975263.1"
                     /translation="DSLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKSSTVYSAATQT
                     GVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGD
                     FHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITY
                     DCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQ
                     NGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVMVR"
     gene            complement(832..1692)
                     /gene="rsmI"
                     /locus_tag="OQQ75_000849"
     CDS             complement(832..1692)
                     /gene="rsmI"
                     /locus_tag="OQQ75_000849"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HCS1975264.1"
                     /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAE
                     DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG
                     YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE
                     AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK
                     EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALVAEIHGVKKNA
                     LYKYALEQQG"
     gene            1756..3783
                     /gene="lpoA"
                     /locus_tag="OQQ75_000850"
     CDS             1756..3783
                     /gene="lpoA"
                     /locus_tag="OQQ75_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoA"
                     /protein_id="HCS1975265.1"
                     /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQ
                     ADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKT
                     LLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
                     QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP
                     DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI
                     QQGFEAAKNIGTQPVAAQVAAADVAEQPQPQTADGVASPAQASVSDLTGDQPAAQPVP
                     VSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGARIVVGPLLKNNVEEL
                     LKSNTPLNVLVLNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSS
                     LGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGTPITPRATTDSG
                     MTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGAMLYAS
                     SRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDA
                     WSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS"
     gene            3741..4136
                     /locus_tag="OQQ75_000851"
     CDS             3741..4136
                     /locus_tag="OQQ75_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HCS1975266.1"
                     /translation="MATVPTRSGSPRQLTTKQTGDAWEVQARRWLEGKGLRFVAANVN
                     ERGGEIDLIMREGWTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS
                     FDTVDCRFDVVAFTGNEVEWIKDAFNDHS"
     gene            4156..4746
                     /gene="diaA"
                     /locus_tag="OQQ75_000852"
     CDS             4156..4746
                     /gene="diaA"
                     /locus_tag="OQQ75_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA initiator-associating protein DiaA"
                     /protein_id="HCS1975267.1"
                     /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI
                     LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ
                     VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
                     IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD"
     gene            4756..5331
                     /gene="yraP"
                     /locus_tag="OQQ75_000853"
     CDS             4756..5331
                     /gene="yraP"
                     /locus_tag="OQQ75_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HCS1975268.1"
                     /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ
                     VDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD
                     GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
                     LVTEREAKAAADIASRVSGVKRVTTAFTFIK"
     gene            complement(5445..6485)
                     /locus_tag="OQQ75_000854"
     CDS             complement(5445..6485)
                     /locus_tag="OQQ75_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1975269.1"
                     /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQHYYGKAFTA
                     AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR
                     TLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT
                     LVFMGFVLGWGFAAICLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEARSGFFS
                     RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI
                     PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV
                     SGVIVGGLALLF"
     gene            complement(6558..7193)
                     /locus_tag="OQQ75_000855"
     CDS             complement(6558..7193)
                     /locus_tag="OQQ75_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HCS1975270.1"
                     /translation="MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGV
                     FNPHDPQLSDALAQVTEPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLG
                     AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
                     TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE"
     gene            7321..7839
                     /gene="yhbO"
                     /locus_tag="OQQ75_000856"
     CDS             7321..7839
                     /gene="yhbO"
                     /locus_tag="OQQ75_000856"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417622.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein/nucleic acid deglycase"
                     /protein_id="HCS1975271.1"
                     /translation="MSKKIAVLISDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVK
                     GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFA
                     ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP
                     AFNREALRLLGA"
     gene            complement(7819..8262)
                     /locus_tag="OQQ75_000857"
     CDS             complement(7819..8262)
                     /locus_tag="OQQ75_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbP family protein"
                     /protein_id="HCS1975272.1"
                     /translation="METLITISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY
                     ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN
                     HRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA"
     gene            8313..8615
                     /gene="yhbQ"
                     /locus_tag="OQQ75_000858"
     CDS             8313..8615
                     /gene="yhbQ"
                     /locus_tag="OQQ75_000858"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708956.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage response exodeoxyribonuclease YhbQ"
                     /protein_id="HCS1975273.1"
                     /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG
                     ELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD"
     gene            complement(8602..9105)
                     /locus_tag="OQQ75_000859"
     CDS             complement(8602..9105)
                     /locus_tag="OQQ75_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1975274.1"
                     /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL
                     VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE
                     FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEY
                     HEHFNRF"
     gene            complement(9099..9623)
                     /locus_tag="OQQ75_000860"
     CDS             complement(9099..9623)
                     /locus_tag="OQQ75_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HCS1975275.1"
                     /translation="MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA
                     LDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADVSDLLMIAA
                     RKQDPDTLFFQRRLVIEGDTELGLHVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK
                     TAPETKQTSVGEPC"
     gene            9832..10812
                     /locus_tag="OQQ75_000861"
     CDS             9832..10812
                     /locus_tag="OQQ75_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017457364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1975276.1"
                     /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE
                     KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY
                     AAERYPNIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL
                     EVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLID
                     RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR
                     SPAYVSQVAKVWRQAIDRCKADPQSAWMETLGSMSEGTQTTLGAYHRKWQ"
     gene            10821..11699
                     /locus_tag="OQQ75_000862"
     CDS             10821..11699
                     /locus_tag="OQQ75_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312067.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1975277.1"
                     /translation="MKYSLGPVLWYWPKETLEDFYQQAATSSADVIYLGEAVCSKRRA
                     TKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM
                     CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN
                     QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN
                     GIQTMSGYVYNLGNELTSMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLLLTANS
                     DCNGYWRRLAGLELQA"
     gene            11905..12912
                     /locus_tag="OQQ75_000863"
     CDS             11905..12912
                     /locus_tag="OQQ75_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase-like monooxygenase"
                     /protein_id="HCS1975278.1"
                     /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY
                     WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY
                     PGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG
                     YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP
                     YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGV
                     QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL
                     G"
     gene            complement(13030..14274)
                     /gene="mtr"
                     /locus_tag="OQQ75_000864"
     CDS             complement(13030..14274)
                     /gene="mtr"
                     /locus_tag="OQQ75_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HCS1975279.1"
                     /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS
                     MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL
                     TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK
                     VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY
                     GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV
                     LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRLKTALLTFAPPV
                     VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMITLIL
                     VFGVGNALVHILSSFNLLPVYQ"
     gene            complement(14428..16317)
                     /gene="deaD"
                     /locus_tag="OQQ75_000865"
     CDS             complement(14428..16317)
                     /gene="deaD"
                     /locus_tag="OQQ75_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DeaD"
                     /protein_id="HCS1975280.1"
                     /translation="MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR
                     DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR
                     GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE
                     MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
                     DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN
                     GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG
                     RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ
                     QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKR
                     EFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI
                     ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH
                     TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR
                     FGGDA"
     gene            complement(16310..16390)
                     /gene="yrbN"
                     /locus_tag="OQQ75_000866"
     CDS             complement(16310..16390)
                     /gene="yrbN"
                     /locus_tag="OQQ75_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YrbN"
                     /protein_id="HCS1975281.1"
                     /translation="MKIADQFHDELCRLAAINFEAHVLHG"
     gene            complement(16497..17381)
                     /gene="nlpI"
                     /locus_tag="OQQ75_000867"
     CDS             complement(16497..17381)
                     /gene="nlpI"
                     /locus_tag="OQQ75_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020802045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HCS1975282.1"
                     /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL
                     ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL
                     GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD
                     PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER
                     LKADATDNTSLAEHLSETNFYLGKYYLSLGDSDSATALFKLAVANNVHNFVEHRYALL
                     ELSLLGQDQDDLAESDQQ"
     gene            complement(17490..19625)
                     /gene="pnp"
                     /locus_tag="OQQ75_000868"
     CDS             complement(17490..19625)
                     /gene="pnp"
                     /locus_tag="OQQ75_000868"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312072.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HCS1975283.1"
                     /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV
                     VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL
                     FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
                     YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQN
                     INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSE
                     TIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL
                     PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM
                     VGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL
                     MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREGISALQMD
                     IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK
                     DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV
                     YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ
                     GRIRLSIKEATEQSQPAAAPEAPAAEQGE"
     gene            complement(19873..20142)
                     /gene="rpsO"
                     /locus_tag="OQQ75_000869"
     CDS             complement(19873..20142)
                     /gene="rpsO"
                     /locus_tag="OQQ75_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HCS1975284.1"
                     /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA
                     EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR"
     gene            complement(20291..21235)
                     /gene="truB"
                     /locus_tag="OQQ75_000870"
     CDS             complement(20291..21235)
                     /gene="truB"
                     /locus_tag="OQQ75_000870"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HCS1975285.1"
                     /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT
                     GALDPLATGMLPICFGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT
                     FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITIYELLF
                     IRHEGNELELEIHCSKGTYIRTIIDDLGKKLGCGAHVIYLRRLAVSKYPVERMVTLEH
                     LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP
                     LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA"
     gene            complement(21235..21636)
                     /gene="rbfA"
                     /locus_tag="OQQ75_000871"
     CDS             complement(21235..21636)
                     /gene="rbfA"
                     /locus_tag="OQQ75_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001712908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HCS1975286.1"
                     /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS
                     RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS
                     LVEGMRMSNLVTSVVKHDEERRVNPDDSKED"
     gene            complement(21800..24448)
                     /gene="infB"
                     /locus_tag="OQQ75_000872"
     CDS             complement(21800..24448)
                     /gene="infB"
                     /locus_tag="OQQ75_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HCS1975287.1"
                     /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQT
                     LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL
                     AAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKN
                     AQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSS
                     DYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRG
                     GKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAM
                     ATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHV
                     DHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARG
                     AQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ
                     YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFL
                     DKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLS
                     GVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVN
                     IVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNV
                     RADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKS
                     PKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIG
                     VKNYNDVRTGDVIEVFEIIEIQRTIA"
     gene            complement(24473..25960)
                     /gene="nusA"
                     /locus_tag="OQQ75_000873"
     CDS             complement(24473..25960)
                     /gene="nusA"
                     /locus_tag="OQQ75_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HCS1975288.1"
                     /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID
                     VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF
                     DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEA
                     VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE
                     EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW
                     DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW
                     ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL
                     LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAA
                     RGVCTLEDLAEQGIDDLADIEGVTDEKAGALIMAARNICWFGDEA"
     gene            complement(25988..26440)
                     /gene="rimP"
                     /locus_tag="OQQ75_000874"
     CDS             complement(25988..26440)
                     /gene="rimP"
                     /locus_tag="OQQ75_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HCS1975289.1"
                     /translation="MSTLEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSED
                     GINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV
                     LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF"
     gene            complement(26647..26723)
                     /locus_tag="OQQ75_000875"
     tRNA            complement(26647..26723)
                     /locus_tag="OQQ75_000875"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26687..26689),aa:Met,seq:cat)
     gene            27071..28414
                     /gene="argG"
                     /locus_tag="OQQ75_000876"
     CDS             27071..28414
                     /gene="argG"
                     /locus_tag="OQQ75_000876"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HCS1975290.1"
                     /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN
                     LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT
                     TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT
                     DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN
                     PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSNDVEMMLEANRIGGRHGLGMS
                     DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG
                     RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG
                     DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSATSGVPQVENMENKGQ"
     gene            complement(28422..30047)
                     /locus_tag="OQQ75_000877"
     CDS             complement(28422..30047)
                     /locus_tag="OQQ75_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS1975291.1"
                     /translation="MTVFNKFARSFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFF
                     VLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDP
                     DEVVKMLGMYIPYLCAFAFLSLLFWAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQ
                     FAYKDAKNKKTFSPYILASRFATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVR
                     DTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISSAPYTALSVP
                     LSLTADSVLSHDIHNYPDNIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETV
                     YVRGFDELLLPHLSQALQQNTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDAC
                     YDNSIHYTDSLLGQVFELLKDRRASVMYFADHGLERDPTKKNVYFHGGREASQQAYHV
                     PMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQTLEEVIAHYKGDS
                     RVVDANHDVFDYVMFRKEFTEDKQGNPPPEGQG"
     gene            complement(30506..30592)
                     /locus_tag="OQQ75_000878"
     tRNA            complement(30506..30592)
                     /locus_tag="OQQ75_000878"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30556..30558),aa:Leu,seq:gag)
     gene            complement(30607..30939)
                     /gene="secG"
                     /locus_tag="OQQ75_000879"
     CDS             complement(30607..30939)
                     /gene="secG"
                     /locus_tag="OQQ75_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HCS1975292.1"
                     /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG
                     SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA
                     KPTSDIPN"
     gene            complement(31167..32504)
                     /gene="glmM"
                     /locus_tag="OQQ75_000880"
     CDS             complement(31167..32504)
                     /gene="glmM"
                     /locus_tag="OQQ75_000880"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HCS1975293.1"
                     /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK
                     IIISKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS
                     HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE
                     FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG
                     ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL
                     RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD
                     KTTTGDGIVAGLQVLAAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK
                     AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV"
     gene            complement(32497..33345)
                     /gene="folP"
                     /locus_tag="OQQ75_000881"
     CDS             complement(32497..33345)
                     /gene="folP"
                     /locus_tag="OQQ75_000881"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312083.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HCS1975294.1"
                     /translation="MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHA
                     NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWLSVDTSKPEV
                     IRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE
                     VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGM
                     SRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAK
                     ENKRYE"
     gene            complement(33435..35369)
                     /gene="ftsH"
                     /locus_tag="OQQ75_000882"
     CDS             complement(33435..35369)
                     /gene="ftsH"
                     /locus_tag="OQQ75_000882"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HCS1975295.1"
                     /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND
                     QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI
                     FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA
                     KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG
                     SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN
                     QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH
                     MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMIEFEKAKDKI
                     MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP
                     EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG
                     FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD
                     NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP
                     VDEPRTPNPGNTMSEQLGDK"
     gene            complement(35469..36098)
                     /gene="rlmE"
                     /locus_tag="OQQ75_000883"
     CDS             complement(35469..36098)
                     /gene="rlmE"
                     /locus_tag="OQQ75_000883"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HCS1975296.1"
                     /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ
                     SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD
                     ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS
                     FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP"
     gene            36224..36517
                     /gene="yhbY"
                     /locus_tag="OQQ75_000884"
     CDS             36224..36517
                     /gene="yhbY"
                     /locus_tag="OQQ75_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HCS1975297.1"
                     /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH
                     ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR"
     gene            complement(36674..37150)
                     /gene="greA"
                     /locus_tag="OQQ75_000885"
     CDS             complement(36674..37150)
                     /gene="greA"
                     /locus_tag="OQQ75_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006178768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS1975298.1"
                     /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE
                     QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL"
     gene            37398..38831
                     /gene="dacB"
                     /locus_tag="OQQ75_000886"
     CDS             37398..38831
                     /gene="dacB"
                     /locus_tag="OQQ75_000886"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HCS1975299.1"
                     /translation="MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVG
                     ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV
                     ARFGADPTLKRQDIRNMIATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
                     SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE
                     LDVIPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR
                     QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD
                     AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL
                     AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV
                     EPADQRNRRIPLVRFESRLYKDIYQNN"
BASE COUNT         9439 a        10577 c         9577 g         9262 t
ORIGIN      
        1 gacagcctgg atattaaaac cacattacag gcaaacgaca ttccaggact cacaaccgac
       61 caggttgtct ctgttaacac ccgattcaca cagataaaaa gcagcaccgt atattctgct
      121 gcaacccaaa cgggtgtttg ccagggtgac acgtctcgtt atggacccgt taatattggt
      181 gcaaatacca cctttaccct gtatgtcacc aagccatttc tcggctcgat gaccattccg
      241 aaaacggata ttgccgtcat taaaggcgcg tgggtcgatg gaatgggaag cccgtctaca
      301 ggtgacttcc atgatttagt caagttatcg attcagggaa atctcaccgc cccacagtcg
      361 tgcaaaatta atcagggcga tgttattaag gttaattttg gattcatcaa tggtcagaag
      421 tttaccaccc gcaatgccat gccagacggt tttactccag tagactttga tatcacttat
      481 gactgtggtg atacttcaaa gattaaaaac tcgttgcaaa tgcgcatcga cggtacaact
      541 ggggtagtag accagtacaa cctggtcgcc aggcgaagaa gttcagacaa tgtgcccgat
      601 gtcggtattc gtattgaaaa tctcggcggc ggagttgcaa atattccttt tcagaacggt
      661 atccttcccg ttgatccttc cgggcatggc accgtcaata tgcgcgcctg gccagttaat
      721 ctggtcggtg gtgagctgga aacaggaaaa tttcagggca cagccaccat taccgtcatg
      781 gtgcggtaaa agaagacgtt gcgttttgat taacgcaacg cttcggcact gttacccctg
      841 ctgctccagc gcatacttat acagcgcatt tttcttcacg ccatgaattt ctgcgaccag
      901 cgccgccgct tttttcagcg gcagttctgc ctgtagcagc gccagcgtgc gcagggcatc
      961 ggcgggtaag tcttcttcct gtgctttatg accttcgaca atcagcacca tttcgccttt
     1021 gcgacggttt tcatcttcct ttacccacgc cagcagttcg ccaacgggcg cgccgtgaat
     1081 ggtttcccag gttttggtca gctcacgcgc cagaaccacg tagcgggatt cgcctaatac
     1141 cgcaacgata tcttccaggc tatctaacag acggtgggtg gattcataaa aaatcagcgt
     1201 gcgcggctcc gcttcaatgg cttttagcgc atcacggcgg ccttttgatt tggcaggtaa
     1261 aaagccttcg taacagaaac ggtcagaggg taaacccgcg gcgcttaacg cagtgatagc
     1321 agcacacggc ccgggtagcg gcaccacgcg aatccccgct tcacggcagg tacgcaccag
     1381 atggtagcca ggatcgttaa ttagcggcgt tccggcatcg gaaaccagcg caatgttttg
     1441 cccctcttgc agcttcgcca gcagcgtttc ggctttttgt tgttcgttat ggtcgtgcag
     1501 cgcaaacaac cgggcattaa tcccaaaatg ttgcagcaat aaaccggtgt gacgagtatc
     1561 ctcggcggca atcagatcaa cggcctgtaa tacctctaac gcacgctggg tgatatccgc
     1621 cagattgccg attggcgtcg gtacaatgta aagctggccc tgagaattat ccgccgattg
     1681 gtgttgtttc attgtgtcgt ccgtattgcc gatttaatat tgagcattgc gtaaaaaaat
     1741 atcactggat acattatggt accctcaaca ttttctcgtt tgaaagccgc gcgttgtctg
     1801 cctgttgttc tggcagccct gattttcgcc ggttgtggca cccatactcc cgatcagtcc
     1861 actgcttata tgcagggcac ggcgcaggct gattctgcct tttatcttca gcagatgcag
     1921 caaagctctg atgataccag gatcaactgg caattactcg ccattcgtgc actggtgaaa
     1981 gaaggtaaaa ccgggcaggc ggttgagttg tttaaccaac taccgcaaga actgaacgat
     2041 tctcagcgtc gcgagaaaac actgctggcg gtagagatta aactggcgca gaaagatttt
     2101 gctggcgcgc aaaacttgct ggcgaaaatc acacctgccg atttagaaca aaaccagcaa
     2161 gcgcgttact ggcaggcaaa aatcgatgcc agccaggggc gtccttccat tgatttactg
     2221 cgcgcgttaa ttgctcagga accgctgctc ggcgcgaaag aaaaaaagca gaatattgat
     2281 gccacctggc aggcgctctc ctccatgact caggaacagg cgaatacgct ggtgatcaac
     2341 gccgacgaaa atattctgca aggctggctg gatctgcagc gcgtctggtt tgataaccgt
     2401 aacgatcccg atatgatgaa agccgggatc gccgactggc agaaacgtta tccgaacaat
     2461 ccgggcgcga aaatgctgcc aacgcagttg gttaacgtaa aagcgtttaa accagcctcg
     2521 accaacaaaa tcgccctgct gttgccgctg aatggccagg cagcggtatt tggtcgcact
     2581 attcagcaag gctttgaagc ggcgaaaaat atcggcactc agccagtggc ggctcaggta
     2641 gctgccgcag acgtagcaga acaacctcag ccgcaaactg cggatggcgt tgccagcccg
     2701 gcacaagcct cggttagcga tctgaccggt gatcagcctg cggcccagcc ggtgcctgta
     2761 agcgccccgg cgacaagcac cgcagcggta agcgcacccg caaatccatc cgcagagctg
     2821 aaaatctacg atacctcatc acaaccactt agccagatct taagccaggt tcagcaggat
     2881 ggcgcgagaa ttgtggttgg tccgttgctg aaaaataacg ttgaagagtt gcttaagagc
     2941 aacaccccgc tgaacgtgct ggtactgaac cagccggaga atatcgaaaa ccgcgtcaat
     3001 atttgttact tcgcgctttc accggaagac gaagcgcgcg atgcagcgcg tcatattcgt
     3061 gaccagggta aacaagcgcc gctggtgctg atcccacgca gttcattggg cgatcgcgta
     3121 gccaatgcgt ttgcgcagga gtggcagaaa ctgggcggcg gcaccgttct gcaacaaaaa
     3181 tttggttcca ccagcgaatt acgcgcgggt gttaacggcg gttctggtat cgctttaacg
     3241 ggtaccccga ttactcccag agcgacaacc gactccggca tgacgaccaa caatccaacg
     3301 ctgcaaacca cgccaaccga tgaccagttc accaataatg gcggtcgtgt cgatgcggtg
     3361 tacattgtgg caacgccggg tgaaatcgct tttatcaaac cgatgatcgc catgcgtaac
     3421 ggtagccaga gcggtgcaat gctgtacgcc agctcccgca gcgcacaagg caccgcaggc
     3481 ccggatttcc gtctggagat ggaaggtttg cagtacagcg aaatcccgat gctggcgggc
     3541 ggtaatctgc cgttaatgca gcaggcactc agcgcggtga ataacgatta ttcactggct
     3601 cgcatgtatg cgatgggcgt cgatgcctgg tcgctggcaa atcatttctc acaaatgcgc
     3661 caggttcagg gttttgaaat caacggtaat accggaagcc tgacggcaaa cccggattgc
     3721 gtgattaaca ggaagttatc atggctacag taccaacaag gtcaggtagt ccccgccagt
     3781 taaccaccaa acagaccggc gatgcgtggg aagtacaagc gcgtcgctgg ctggaaggca
     3841 aaggactgcg atttgtcgcc gctaacgtga acgagcgtgg cggtgagatc gatctgataa
     3901 tgcgtgaagg ctggaccacc gtttttgtcg aggtgcgtta ccgccgctct gcgctttatg
     3961 gcggcgcggc agccagtgtg acccgcagca aacaacacaa attattacag actgcccgct
     4021 tgtggctcgc gcgtcataat gggagttttg atactgtgga ttgccggttc gatgtggtag
     4081 ccttcaccgg gaatgaggtt gagtggatta aggatgcctt taatgaccac tcataattaa
     4141 ggtttaagga ttagcgtgca agaaagaatt aaagcttgct tcactgaaag cattcaaact
     4201 caaattgcgg cggcagaggc gcttccggat gccatctccc gtgcagccat gacgctggtt
     4261 cagtctctgc tcaatggcaa caaaatcctc tgttgtggta atggaacttc cgctgccaat
     4321 gcacagcatt ttgctgccag catgatcaac cgtttcgaaa cggagcggcc cagcttacct
     4381 gccattgcac taaatactga taatgttgtc ttaacggcga ttgccaacga tcgcttacat
     4441 gatgaagtgt atgcaaaaca ggtgcgggcg ctgggtcatg cgggagatgt attgttagcc
     4501 atttccaccc gtggcaacag ccgcgatatt gttaaagcag ttgaagccgc cgttacgcgt
     4561 gatatgacca ttgtggcatt gaccggctat gacggcggcg aacttgcagg tttgttaggg
     4621 ccacaggatg tggagatccg cattccttcg catcgtagtg ctcgcattca ggaaatgcat
     4681 atgctgacgg taaattgcct gtgcgatctg atcgataaca cgcttttccc tcaccaggat
     4741 gattaaggag aatacatgaa ggcattatcg ccaatcgcag tccttatttc cgcgctgctg
     4801 ttgcaaggtt gtgttgccgc tgccgtagtg ggtaccgctg ctgtgggtac caaagccgca
     4861 actgacccac gcagtgtcgg tacccaggtg gacgatggta ccctggaagt gcgcgtgaac
     4921 agcgcattgt cgaaagacga acagattaag aaagaaaccc gtattaatgt cacggcgtat
     4981 cagggcaaag tgctgctggt tgggcagtca ccaaatgctg aactttcggc tcgcgccaaa
     5041 cagattgcta tgggcgtaga cggtgccaac gaagtgtata acgagattcg tcagggccag
     5101 ccgattggtc tgggcgaagc atctaacgat acgtggatca ccaccaaagt gcgttcgcag
     5161 ctcttaacca gcgacctggt gaaatcgtcc aacgtgaaag tgaccaccga aaacggtgaa
     5221 gtgttcctga tggggctggt gactgaacgt gaagcgaaag cggcggcaga tattgccagc
     5281 cgggtgagcg gcgtaaagcg ggtaaccaca gcgtttacgt ttattaaata gcagcccctt
     5341 gtaatgcctg atgcgacgct tgccgcgtct tatcaggcct acaacgatgc aaaccgtagg
     5401 tcggataagg cgtttacgcc gcatccgaca tgttttccct caaatcagaa caacagcgcc
     5461 agcccgccga caatcacacc agacactgcc accatcgccc ctgtcagcca taaggctttc
     5521 gccgggaacg ctttgcgcag cataatcagt gacggcaaac tcactgccgg gagcgtcatc
     5581 aacaatgcca gcgccggagc ggttcccata cctgccagca tcatcgtttg tacaatcgga
     5641 atttctgctg ccgtgggaat gacaaacaag catcctgcta ccgccatcgc caccacccac
     5701 atcaggctgt tatcgacagc accatcggca tgggggaata accagacgcg tgcggcaccc
     5761 aacaccagta ctgcaaggat gtaaaccggg atcgtactcc agaaaagtgt ccatagcgcc
     5821 ctgccccagc ggctaaaaaa accgctccgt gcttccggta tgtcaatttc gaccggtgcc
     5881 tgcgtttgcg gtgtttcacg cacccatttt tgcaccagcg tcgcaatcag caacaccatc
     5941 accagcccgg ccaccagaca aatcgccgca aaaccccagc cgaggacaaa ccccataaac
     6001 accagcgtcg ccgggtttaa caccggattg cccatccaga atgccagcgc accgcccatc
     6061 gatacctgtt ggcgacgcat ccccgccgcg accggagccg cacagcaggt acacatcatg
     6121 cccggcagcg aaaacagcgt tcccagcagc gtgccgcgaa agcgcgattg cccaagcgta
     6181 cgcaacaacc agtcacgcgg gatcagcacc tgaatcaacg aaccgaggat cacccccagc
     6241 accgccgctt tccatactgc gaggaaatag atcatcgcgt aatccaacgc cgcttgccac
     6301 ggattagcat ccgcctgcgc aaggatagat ttaccgatac tgtgggtttc ggctgcagta
     6361 aacgctttgc cgtagtaatg ttgccatttc acataccaga gaccggcaat gacaacgaga
     6421 aagaaaagcg cgggtttcca ccactgaatg ggtgttgccg cctgagatga agactgacca
     6481 gtcatagcat tccctaggaa taagttatga taattgagcg cgtgaatatt acgctcacta
     6541 tcaattcttg ggaataatta ttcagctctt ttgcgtaatt ctgaagagct taaaatcgtc
     6601 acgccttcat gctcaggccg catcgcctct gccagcatga cccgcgccac gtctctcgca
     6661 tcaatggatt tccagttacc tggtaacaaa cggaacagcg gcgcaaaaag cgtttcgttc
     6721 atccgctgtt tgctacgatc gcccagtaac atcgacgggc gagcaatggt caatttcggc
     6781 cagttctggg caattaatgc ttcttccatc tcccctttga cgcggttata gaaaaacggc
     6841 gagtgggcat tggcccccat agcactgacc accagcatat gctgcgcgcc cagccgccgc
     6901 ccggttaatg cggtatccac taccagcgtg taatcggcat gaataaacgc ctctttgctc
     6961 cccgcttctc gccgcgtggt gccgagacaa caaaacacaa tgtcgatggg ttcggtgacc
     7021 tgcgccaacg cgtcactcag ttgcggatca tggggattaa acaccccggg catatcgccc
     7081 aacggacgtc gcgtcggcgc agcaatggcg ttaactttcg gttcattaat caacatccgc
     7141 agcaggtgac cgcccaccag ccccgttgcg cctgtaatca gtacctgact catcttcgct
     7201 cctttacaga attgtctgcc ttgcgctcca cggctcatgc accagtctta atagaccatg
     7261 aggtaattat ccccgattgt gggaaattcg cctcatccaa tgcaacaacg cggaggaagc
     7321 atgagtaaga aaattgccgt tttaatcagt gatgaatttg aggattcaga atttacttca
     7381 cccgcagacg agttccgtaa agccggacac gaagtaatta ccattgaaaa gcaagcgggt
     7441 aaaacggtga aaggcaaaaa aggagaagcc agcgtgacca tcgataaatc catcgatgaa
     7501 gtgacgccag cggagtttga tgccctgctg ctaccgggcg gccattcacc ggattatctg
     7561 cgtggggaca accgttttgt cacctttacc cgtgattttg tgaatagcgg caaacctgtt
     7621 ttcgccatct gtcacggtcc gcagctgctg atcagcgccg atgtgattcg ggggcgcaaa
     7681 ctgaccgcag ttaaaccgat cattattgat gttaaaaatg cgggcgcgga attttacgat
     7741 caggaagtcg tggttgataa agatcagctg gttaccagcc ggacaccgga cgatctgcca
     7801 gcgtttaacc gcgaggcgtt acgcctgctc ggtgcctgag tcgcgtagcc aaatcatttt
     7861 tttaccaaag cccagcgtgt tgtcggtgaa tttgatttca tcgagccgga tttcccacac
     7921 cggggccgac agcattctgg caaccggaaa gcgatgattg tacgccttgc gcgcgaggtc
     7981 gctttcctca ccttccagcc tgcggatctc acctttaaac tgcacaccgc gaattaacgc
     8041 taccgttttc ggctgaccgt ttaccgttcc ggcaaccgca gcctgcggcc cactcatctg
     8101 cgcgtggcgc gttttttctt ccgtcaaaat gtagaaggcg actttctgcg catcaaacag
     8161 ataaaaagca ttagcgcacc acagttcccc ttcctgctgc acacaccagg tgacaacatg
     8221 ttgttttgcc aaccaacggc tgatggtgat gagtgtttcc attgctgttc tcttttatac
     8281 tgtgggcctg accttaacat gcgacgcaga cgatgacacc ctggtttctt tacttgatcc
     8341 gtaccgccga caataagctt tataccggga tcaccacgga tgtcgaacgc cgctatcagc
     8401 agcaccaaag cggcaaaggg gcgaaagcac tgcgcgggaa aggagaactg acgctggcgt
     8461 tttctgcgcc agtgggcgac cgttcgctgg cactacgggc ggaatatcgc gttaagcaac
     8521 tgaccaaacg gcaaaaagag cgtctggtag cggaaggcgc agggtttgca gaactgttga
     8581 gcagcctgca aaccccggag attaaaagcg attgaaatgc tcgtgatact caaccagacc
     8641 ggttacgcca ttcagcgcgt catccgctaa acgatgtacc tggaaggcgc tttcagtgcc
     8701 cggccagcgg caacgcagat cgtgatgcgc cgccagttca aagccgaaac gactgtacag
     8761 cgccggatcg cccagcgtca ccactgcggc atagccgaac tcattaagcg aatcgagtcc
     8821 ttcatagacc agttggcgtg ccagcccctg tccacggtat ttttcatcaa ccgccaacgg
     8881 tgccatgccg acccattgca ggtcttcgcc ctgcacatca accggactaa atgccacata
     8941 gccaatgacc tgaccttcgt catctgtcgc caccagcccc agcgtcagaa agccatcttc
     9001 acgcagatcg tgaaccagct tcgcttccgc atcactttcg aatgagcgac gcagcagggc
     9061 atcaataccc ggcgcatcaa tgggaatttc tactcgaatt agcatggttc acctaccgat
     9121 gtctgtttgg tttcaggcgc ggttttcatt cccgcctcaa caaaatccgc cagttgcagc
     9181 agcatcatgc gtaaggcttt cggcatttgc tccagttcaa tggcgtccat caggtttttc
     9241 acatgcagcc ccagctccgt atcgccttca atcaccagcc gacgctggaa gaagagcgta
     9301 tctggatctt gtttacgcgc cgcaatcatc agcagatcgc tgacgtcggc actaaaactc
     9361 acatcagctt gcgcgttctg gctgaccacc agtttgccat tcaccaccga ggtaaaccat
     9421 tgcaggtcaa tatcacgcac atgaatactt aaccagcggc cttcaagaaa ctccagctcg
     9481 ccatcatcca gcgcctgacg gaattgccag cttaagacct gctcaagaac ctggcgtttt
     9541 agcgcaaatg gcgtcagttt taccggtaca ctcaacagag atggccccaa atgcacaata
     9601 cgggaacgaa gtttatccaa cacgagtttt actccctgtt tcaacaatca tcctattttg
     9661 ccatatcaga aaaataacat agcggtataa atcaacaatt ccatatgaaa ttgctgctac
     9721 caccaataca actttaactg ccttaaatca aaaattgtcg cagcaaggtt aactaaaatc
     9781 ccagttcgtt aacatttttg cgttttgata gcgcaacctt caggaaaaat tatggagctg
     9841 ctctgccctg ccggaaatct cccggcgctt aaggcggcca tcgaaaacgg cgcagatgct
     9901 gtttatatcg ggctaaaaga tgataccaat gcccgtcact tcgccggcct taactttacc
     9961 gagaaaaaat tgcaggaagc ggtgagtttt gtccatcaac atcgccgcaa acttcacatc
    10021 gcgattaaca cttttgcgca tccggacggt tacgcccgtt ggcagcgcgc cgtggatatg
    10081 gcggcgcagc tgggtgccga cgcgctgatc ctcgccgacc tcgccatgct ggaatacgcc
    10141 gccgagcgtt atccgaatat tgagcgccac gtatcggtgc aggcttcggc gaccaatgaa
    10201 gaggcgatta acttttatca tcgccatttt gacgttgccc gcgtggtgct gccgcgcgtg
    10261 ttgtcgattc atcaggtgaa acagctggca cgggtcacac ctgtaccact ggaagtgttt
    10321 gctttcggca gcctgtgcat tatgtcggaa ggccgttgct atctgtcgtc gtatctgacg
    10381 ggtgagtcgc ctaacaccgt gggcgcgtgt tctccggccc gtttcgtgcg ctggcaacaa
    10441 acgccgcagg ggctggaatc ccgcctgaac gaagtgctga tcgaccgtta tcaggacggc
    10501 gaaaacgcag gttatccgac gctgtgtaaa gggcgttatc tggtggacgg cgagcgctat
    10561 cacgcgctgg aagaaccaac cagtctcaat accctggaac tgctgccgga gttaatggcg
    10621 gcgaatattg cttcggtgaa aattgaaggc cgccagcgta gcccggcgta tgtcagccag
    10681 gtggcgaaag tctggcgtca ggctatcgac cgttgtaagg ccgatccgca aagcgcgtgg
    10741 atggagacgc tcgggtcgat gtccgaaggc acgcagacca cccttggcgc gtatcaccgt
    10801 aaatggcagt gagaagagca atgaaatatt ccttagggcc agtgctgtgg tactggccaa
    10861 aagagacgct ggaagatttt tatcagcagg ccgccaccag cagcgccgac gtgatttatc
    10921 ttggtgaagc ggtatgcagc aagcgccggg caaccaaagt tggcgactgg ctggagatgg
    10981 caaaatcgct cgccggaagt ggcaagcaga ttgtgctctc cacgctggcg ctggtgcagg
    11041 catcctctga actgggcgaa ctgaaacgct atgttgagaa cggtgagttt ctgattgaag
    11101 ccagcgatct cggcgtggtg aatatgtgcg ctgaacgcaa actgccgttc gtcgccgggc
    11161 acgcgctgaa ctgctacaac gcggtgacgc tgaaaatatt gctcaaacag ggcatgatgc
    11221 gctggtgtat gccggtggag ctttcccgcg actggctggt gaatctgctt aatcagtgcg
    11281 atgagctggg cattcgcaac cagtttgaag tggaagtcct gagctacggt catctaccgc
    11341 tggcctactc cgctcgctgc tttaccgcgc gttcggaaga ccgcccgaaa gatgagtgtg
    11401 aaacctgctg cattaagtat ccgaacgggc gcaacgtgct gtcgcaggaa aaccaacaag
    11461 tgtttgtact caatggcatt cagaccatga gcggctacgt ttacaacctc ggtaacgagc
    11521 tgacatccat gcagggattg gttgatgtgg tccgcctgtc accgcagggt actgacactt
    11581 tcgcgatgct cgacgccttc cgcgctaatg aaaatggcgc tgcgccacta ttgttgacgg
    11641 caaacagcga ctgtaacggc tactggcggc ggctggcagg actggagctg caagcctaag
    11701 taaatatgct cgtcatactt caagttgcat gtgctgcatc tgcattcgtt caccccagtc
    11761 acttacttat gtaagctcct ggggattcac tctcttgtcg ccttcctgca actcgaatta
    11821 tttagagcac agctcacttt gttaacaact ttaactactc tttaatgcag tattaaagat
    11881 taatcggtaa caaagtgagc tgttatgact gataaaacca ttgcgttttc gttactcgat
    11941 ctggccccca ttcccgaagg ttcttcagcg cgagaagcat tctcccactc tctcgatctc
    12001 gcccgtctgg ctgaaaagcg cggctatcat cgctactggc tggcagaaca ccacaatatg
    12061 actggcattg ccagtgctgc cacgtcggta ttgattggct atctggcggc gaataccacc
    12121 acgctgcatc tggggtctgg cggcgtgatg ttgcctaacc actcaccgtt ggtcattgcc
    12181 gaacagttcg gcacgctcaa tacactctat ccggggcgaa tcgatttggg gctgggtcgt
    12241 gcgccaggta gtgaccaacg gacaatgatg gcgctgcgtc gccatatgag cggcgatatt
    12301 gataatttcc cccgcgatgt cgcggagctg gtggactggt ttgacgcccg cgatcccaat
    12361 ccgcatgtgc gcccggtacc aggctatggc gagaaaatcc ccgtgtggtt gttaggctcc
    12421 agcctttaca gcgcgcaact ggcggcgcag cttggtctgc cgttcgcgtt tgcctcacac
    12481 ttcgcgccgg atatgttgtt ccaggcgctg catctttatc gcagcaactt caaaccgtcg
    12541 gcacgactgg aaaaaccata cgcgatggtg tgcatcaata ttatcgccgc cgacagcaac
    12601 cgcgatgccg aattcctgtt tacctcaatg cagcaagcct ttgtgaagct gcgccgcggc
    12661 gaaaccgggc aactgccgcc accgattcaa aatatggatc agttctggtc gccgtccgaa
    12721 cagtatggtg tgcagcaggc gctgagtatg tcgttggtag gtgataaagc gaaagtgcgt
    12781 catggcttgc agtcgatcct gcgcgaaacc gacgccgatg agattatggt caacgggcag
    12841 attttcgacc accaggcgcg gctgcattcg tttgagctgg cgatggatgt taaggaagag
    12901 ttgttgggat agtgtgtctt aacgcgggaa gccttatccg agctggcaac gctgtcctac
    12961 gtagacctga taagcgaagc gcatcaggca ttgtgtaggc agcagaaatg tcggataagg
    13021 caccgctgat tactgataca ccggcagtaa attaaagctc gataaaatat gtaccaatgc
    13081 gttgccgacg ccaaacacca gaatcagcgt aatcatcggc ttgccgcccc agacgcggaa
    13141 tttcgggctg ccaaagcgtt tacgcgatgc gcgggccagc agtgccggaa caattgccgc
    13201 ccagatggta gccgctaaac cagcataacc aatggcgtac aggaatccat tcgggaacag
    13261 cagaccaccc acaacaggcg gtgcaaaggt caacaatgct gttttcaagc ggcccatagc
    13321 cgagtcatcg aaaccaaaca gatctgccag atagtcaaac aaacccagcg ttacgccaag
    13381 gaacgaactc gctaccgcaa agtttgagaa cacgaccagc agaaggtcca ggctacggct
    13441 gttcagcacg ccgcttaatg cctgtaccag cacatcaata ttaccgccct tctctgcaat
    13501 accgataaac tccggacgcg ggatgttacc catcgtcgcc agcaaccaga tggtatacag
    13561 cgccagtgcc atcagcgtac cgtacaccag gcatttcacg atggttttcg gatctttgcc
    13621 gtaatacttc atcaggcttg gcacgttacc gtgataacca aacgacgcca ggcagaacgg
    13681 caatgtcatc agcagatacg gcgcataaga tgcattgctt tctgcaacgt tgaacaatgt
    13741 cgcaggctgc acatgcccca acaggctgcc aaaggtgagg aagaaggtaa tgactttcgc
    13801 ccccagcaca atcgccgtca tgcggctgac ggccttagta ctcaaccaca ccacaaacgc
    13861 taccagcagt gcaaaaccaa aacccgccgc ccgtgccggg acgtttagcg acatctctgc
    13921 gaaggtgtga tgcagaattg aaccactggc agaaatatag gcataggtca ggatatagag
    13981 cacaaaggca atggaaatac cgttgaccac gttccagcct ttgcccagca aatctttggt
    14041 gatggtgtca aaactcgaac cgattcggta attcaggtta gcttccagaa tcatcaagcc
    14101 ggaatgcagc atacagaacc aggtaaagat cagcgccgcc attgaccaga aaaaccacgc
    14161 cccggacatg accactggca gagaaaacat ccctgcgcca ataatggtgc cgccgataat
    14221 caccacgccg ccaagcagcg acggtgacgt ttgggtggtg gttagtgttg ccatgagggc
    14281 ttctctccag tgaaaaatag tgcgactgcg ttgttatgca ttgcactgta ccagtacgcg
    14341 agtacaaaag acagaaaaaa agccccgatg gtaaaaatcg gggctgtata tattatttta
    14401 cagattgtgt tcgctgttca gcgatgatta cgcatcacca ccgaaacgac gacgaccggt
    14461 agagtcatca cgacgcggag cgcggccttc acgacgttcg ccgctaaaac gacgaccatc
    14521 accacggcca ccttcacggc gttcaccgct gaagttacga ccgccttcac gacgttcgcc
    14581 accgaaacca cgaccaccgc cacgacgctc accgccagta tgcggctgtg catcgcccag
    14641 taactgcatg ttcatcggct tgttgagaat gcgagtgcgc gtaaagtgtt gcagcacttc
    14701 acccggcata cctttcggca gttcgatggt ggagtgagaa gcaaacagct tgatgttacc
    14761 aatgtaacgg ctgctgatgt cgccttcgtt agcaatcgca ccaacgatat gacgaacttc
    14821 aacaccatca tcacggccca cttcaatgcg gtacagctgc atatcgccaa catcacgacg
    14881 ttcacgacgc ggacgatctt cacggtcacc acgcgggcca cggtcgttac gatcgcgcgg
    14941 accacggtca tcacggtcac ggaattcacg tttcggacgc atcggcgcat ctggcggtac
    15001 gatcagagta cgttcaccct gtgccatttt cagcagtgcc gcagccagag tttcgagatc
    15061 cagctcttca ccttctgcag tcggctgaat tttgctcagc agtgcgcggt attgatccag
    15121 atcgctgctt tccagctgct gctgtacttt agcggcgaat ttttccagac ggcgtttgcc
    15181 cagcagttct gcgttcggca gttctacttc cggaatagtc agcttcatag tacgttcaat
    15241 gttgcgcagc agacgacgct cgcggttctc aacgaacagc agcgcgcggc cagcacgacc
    15301 cgcacgaccg gtacgaccga tacggtgaac gtaagactca gaatccatcg ggatatcgta
    15361 gttaactacc aggctgatac gctcaacgtc caggccacgg gctgcaacgt cggtcgcaat
    15421 caggatgtcc agacgaccat ctttcaggcg ttccagtgtc tgttcacgca gcgcctggtt
    15481 catgtcaccg ttcagcgcgg cgctgttgta gccgttacgc tcaagagctt cagccacttc
    15541 cagagtcgcg tttttggtac gaacgaagat aatcgccgca tcaaaatctt ccgcttccag
    15601 gaaacgtacc agtgcttcgt ttttgcgcat accccagaca gtccagtagc tctggctgat
    15661 gtcaggacgg gtagtcacgc tggactgaat gcgcacttcc tgcggctctt tcataaagcg
    15721 gcgggtaatg cgacgaatcg cttccggcat ggttgcagag aacagagcgg tctgatgacc
    15781 ttccgggatc tgcgccataa tggtttcaac gtcttcgatg aagcccatgc gcagcatttc
    15841 gtcagcttca tccagaacca gaccgctcag tttagagagg tccagagtgc cacgtttcag
    15901 gtggtccagc agacggcccg gagtaccgac aacgatctgc ggcccctgac gcagggcgcg
    15961 taattgcacg tcataacgct ggccgccgta cagagcaacc acatttacgc cgcgcatgtg
    16021 tttagagaaa tccgtcattg cttcagcaac ctgtaccgcc agttcgcggg tcggtgccag
    16081 caccagaatc tgtggtgctt tcagctcagg atcaagattc tgcaacagag gtaaagagaa
    16141 tgctgcagtt tttccgctcc ccgtctgggc catacccaga acgtcgcggc cattcagcag
    16201 atgtggaata cactctgcct gaattggaga tggtttttcg taacccagat cgttaagggc
    16261 ttcaaggata ggagccttca ggcccagatc tgcaaaagtg gtttcgaatt cagccatgta
    16321 gtacgtgtgc ctcaaaatta atggcggcca gtctacataa ctcatcatga aattgatcag
    16381 caattttcat tgaaaagtgt gaaccggctc aaagtaggtg tattaacgaa caacaacgcc
    16441 ctcacccctt aaggtgatgg caatcaaaaa agattacggg ctgatgtgta cgtcagctat
    16501 tgctggtccg attctgccag gtcatcttgg tcctggccca ggagcgataa ttccaacaat
    16561 gcgtatcggt gctcaacaaa gttatgaacg ttgttggcaa ccgccagttt gaacagtgcc
    16621 gtggcgctgt ccgaatcccc cagacttagg tagtacttac ctaaatagaa gttggtttca
    16681 ctgagatgct cagcgagcga ggtgttatcc gttgcgtccg ccttgagcct ttccattaac
    16741 gtttgttcgc taatgttgcc caggtagaac tcgacaatgt tccatcccca ctgttcctta
    16801 tccgattttt cgaagtgctg tttcaacact tctttagcct gcttctcatc gagcttctgc
    16861 tcggcgagat aaagccacag actacggaaa ggatcattgg gatcgtcttg ataaaacgcc
    16921 agcagatcat cttgcgctaa cttgtcacga ccgccgtaat ataatgcgat cccgcgattc
    16981 aagtgcgcgt agttgtaagt tggatcaagc tcaagtacag aatcaaacgc ttcataggca
    17041 gcatcaaaat tgcctgcctg cgttaaatat atgcctaagt aattgaacac ttcaggcata
    17101 tccggtcgga ttgccagcgc ttgcgaaaaa tcgttacgcg ctaatgccct cagaccgaga
    17161 ctatcataca acactccgcg ctcatataaa agctgtgcgc gttcgtcatc ggttaaagcc
    17221 cgactggcaa ggatttgttc catacgtgcc agaatcactt cctgctgtaa agtcggttgc
    17281 aatggtaccg cgaggacttc acttttacgc caggaagtat tactgcatcc tgcaagcgta
    17341 agtgctgtcg caacgaaaca ccagcgcaaa aaaggcttca tttcccactc ccgaagacca
    17401 cggttgaatg aacgtcctgt tcccggttgc taacaaggcg tcctgcccgg ttaaaagccc
    17461 cccgccgcag cggagggcaa atggcaacct tactcgccct gttcagcagc cggagcttcc
    17521 ggtgctgcag caggttgaga ctgctcagtc gcttctttaa tgctcagacg gatacggccc
    17581 tggcgatcaa cttccagaac tttcaccggt acttcctgac ccatctgcag gtaatcggtc
    17641 actttctcaa cgcgtttgtc agcgatttga gagatgtgga ccagaccttc tttaccgccg
    17701 ccgatggcaa caaatgcgcc aaagtcaacg atacgggtca ctttaccagt gtagacgcgg
    17761 cccacttcga tttctgcagt gatctcttcg atacgacgaa tagcatgttt cgctttctcg
    17821 ccgtcggtcg ctgcgatctt cacagtaccg tcatcttcga tttcgatggt agtgccagtt
    17881 tcttcggtca gggcacggat aacagagccg cctttaccga taacgtcttt gatcttgtcc
    17941 gggttgatct tgatggtatg gatacgcggt gcgaactcag agatatcgcc acgcggcgcg
    18001 ttgatcgcct gttccattac gcccaggata tgcagacgcg cacctttagc ctggttcagc
    18061 gcaacctgca tgatctcttt ggtgatacct tcaattttga tatccatctg caatgcagag
    18121 ataccctcgc gggaacccgc aactttgaag tccatatcgc ccaggtgatc ttcgtcgccc
    18181 aaaatgtcag acagtacaac gtagttgtcg ccttctttca ccagacccat tgcgataccc
    18241 gcaacggcag ctttgatcgg cacacctgcg tccatcagcg ccagagacgc gccgcacacg
    18301 gaagccatag aagaggaacc gttggattca gtgatttcag acacaacacg tacggtgtac
    18361 gggaatttgt ccatatccgg catgactgcc agcacgctgc gcttcgccag acgaccgtga
    18421 ccaatttcac gacgcttcgg agaaccgacc atgccggttt cgcctacgga gtacggaggg
    18481 aagttgtagt ggaacaggaa ggtatcggta cgttcgccca tcagttcatc aagaacctgc
    18541 gcgtcacgag cagtacccag cgttgcggta accagcgcct gcgtttcacc acgggtgaac
    18601 agcgcagaac cgtgagtacg cggcagcacg ccagtacgca catccagacc acggatcata
    18661 tctttttcac gaccgtcgat acgcggttcg cctgccagta cgcggctacg aacaacgttt
    18721 ttctcgatag cgtgcagaat ttcacccagt tcgttttcgt ccagggtttc gtcttcagca
    18781 agcagcgtcg cgatggtttc agatttgatg acatcaacct gcgcataacg ctcttgtttg
    18841 tcggtgatgc ggtaagcatc gctcaggcga gcttcagcca gtgcagcaac gcgcgcgttc
    18901 agcgcttcgt ttaccggctc cggctgccag tcccaacgtg gtttaccggc ttctttcacc
    18961 agttcattga tgttctgaat aacaacctgc tgttgttcat gaccgaacac tactgcgccc
    19021 agcatctggt cttcgctcag cagttcagct tcagattcaa ccatcagaac agcggcttca
    19081 gtaccggcaa caaccagatc cagtttgctc tctttcagct cgtcctgagt cgggttcagt
    19141 acgtactggt cattgatgta acctacgcga gcagcaccaa tcggaccatt gaacggaata
    19201 ccagacagag acagtgctgc ggaagcacca atcatcgcga cgatatccgg gttaacttgc
    19261 gggttaacag aaaccacggt ggcgataacc tgaacttcgt tgacgaagcc ttccgggaac
    19321 agcgggcgaa tcgggcggtc aatcagacgc gcgatcaggg tttcgccttc gcttggacga
    19381 ccttcacgac ggaagaagct acccgggata cgaccagcag cgtaggtacg ctcctgatag
    19441 ttaacggtca gtgggaagaa gtcctgacct ggtttggctt ttttctggcc aacaacggta
    19501 acaaataccg cggtgtcatc catgctaacc ataacagcgg cagtagcctg acgagccatc
    19561 atgccggttt ccagagtcac ggtgtgttgg ccgtactgga atttacgaac gatcggatta
    19621 agcaatgtaa tatcctttct ctttcttaga cagtacctta cggcactggt gttaataccc
    19681 gatcttctgc gcatcctcgc gactaatgac aaccctaacc cagctctatg tgggtaaagc
    19741 ctctcattag ccgcgcgaac ctctgcaacg gaagatcatt catagcaaca atacattagt
    19801 ttccagtgaa ttgctgccgt cagcttgaaa aaaggggcca ctcaggcccc cttttctgaa
    19861 actcggcagg aattagcgac gcagacccag gcgctcgatg agctgggtgt aacgtgctac
    19921 gtctttacgt ttcaggtagt cgagcagttt acgacgctga gaaaccatgc gcagcagacc
    19981 acgacggctg tggtgatctt ttttgtgctc tgcaaagtgg ccctgcaggt ggttgatctg
    20041 tgcagtcagc agtgctacct gaacttcggt agaaccggtg tcgtttgcgt cacgaccaaa
    20101 ctcagaaacg attttagctg ttgcttcagt acttagagac attttaaaac tccaaagtat
    20161 atagaatgaa aggacgccga tctctaattc agcgatccca gtgtacgtta cgcaaagtgt
    20221 taaacaattt acgcgacgtt aagcggcagt attctactcg tagcgacttg ttatcgcaag
    20281 acggttaaca ttacgccggg tattcaacca ccaggcgacg aggcgcgacg cggccttcat
    20341 cgtcaatttc gcccataccg ataaacttgc cgttctcacc ttctgtaacg cgaaccagtc
    20401 cttccagcgg cgcaccggat gtacgaactg ggttaccatt tttgaagtaa acagaagacg
    20461 ttaacggaag attcaccacc gggtagtccg aagctggact gtccattggc atcagtaatg
    20521 gatcaagtaa ctccgcagcc ggaatatcct gctgttcggc ttgttcgacc agttcacgca
    20581 gatgttccag ggtcaccatc cgttcaaccg gatatttact taccgccaga cgacgcaggt
    20641 aaataacatg cgcgccacaa ccgagttttt tacccaggtc atcaatgatg gtgcggatat
    20701 aagtgccttt tgagcagtga atttccagct ccagctcatt gccttcgtgg cgaataaaca
    20761 gcaattcata aatggtaatc gggcgcgctt cacgcggtac ttcaatgccc tgacgcgcat
    20821 attcgtacag ttttttaccc tgatatttca gtgctgaata catcgaaggg atctgttcga
    20881 tatcgccacg gaaagtatcc agcgccgccg ccagttgctc tgcgctaaag gttaccggac
    20941 gttcttcaac gatttgtccg tcggcatcag aagtatcggt acgctgtcca agacgcgcaa
    21001 tgacccgata gcgtttgtcg gagtccagca gatactggga aaacttcgtc gcttccccga
    21061 agcaaattgg caacatgcca gttgccagcg ggtccagcgc accggtatgc ccggcacggt
    21121 tggcgttata aatccgtttc actttttgca gcgcatcatt gctggacata ccctgcggtt
    21181 tatccagcaa caaaacgccg ttaatgtcgc gaccgcgacg acgaggacga ctcattagtc
    21241 ctccttgctg tcgtccgggt taacacgacg ttcttcgtca tgtttgacca cgctggtcac
    21301 caggtttgac atgcgcatcc cttcaaccag agagttgtcg tagaagaagg tcagttccgg
    21361 cacgatacgc aggcgcatcg ctttccccag caggctgcgg atgaaaccag aagcttcttg
    21421 caacgctttg atgcccgctt taaccgcgtc ttcatctttg tcgttgagga acgtcacata
    21481 tactttggca tacgccaggt cgcgagacat ttcgacaccg gaaacggtgg tcatcatgcc
    21541 caggcgagga tctttaattt cacgctgcag gatgagagcg atctcttttt gcatttcctg
    21601 cgctacgcgc tgcgggcgac caaattcttt cgccataata aattctcctg acaaaaaagg
    21661 gactgttagc ccctttttaa aattaatttc aggtggaagg gctgttcacg ttggcctgat
    21721 aagacgcgcc agcgtcacat caggcaatcc atgccggatg cggcgtaaac gccttatccc
    21781 gcatggaacc ctaaaaacct taagcgatgg tacgttggat ctcgatgatt tcgaatactt
    21841 cgatcacatc gccagtgcgg acgtcgttgt agttcttaac gccgatacca cattccatac
    21901 cgttacggac ttcgttaacg tcatctttga agcggcgcag ggactccagc tcgccttcgt
    21961 agataaccac gttgtcacgc agaacgcgga tcgggttgtg acgtttaacc acaccttcgg
    22021 taaccataca gcctgcgatg gcaccaaatt tcggcgattt gaacacgtca cgaacttccg
    22081 ccagaccgat aatctgctgt ttcagttccg gagacagcat accgctcatc gccgctttca
    22141 cttcgtcaat caggttatag atgacggagt agtaacgcag atctaggctt tccgcttcaa
    22201 tcactttacg tgcagaggca tcagcacgta cgttgaagcc aaccaggatg gcgttggacg
    22261 ccgcagccag ggtggcgtcg gtttcggtga taccacctac gccagaaccg atgatcttca
    22321 ctttaacttc gtcagtagac agtttcagca aggagtcgga gatcgcttcc acagaaccct
    22381 gtacgtctgc cttcaggacg atgttcactt cgtgaacttc gccttcggtc atgttggcga
    22441 acatgttctc gagtttagat ttctgctgac gcgccagttt aacttcgcgg aatttaccct
    22501 gacgatacag tgcaacttca cgcgctttct tctcgtcacg tacaacggta acttcatcac
    22561 ccgcagccgg tacgccggac aggccgagga tttccaccgg aatggacgga cccgcttcca
    22621 gcacttcctg acccagttcg ttacgcatcg cacgaacacg accgtattcg aagccacaca
    22681 gaacgatatc gcccttgtgc agagtacctt cacgtaccag aacggtagca accggaccac
    22741 gacctttatc gaggaaggat tcgataaccg caccgctcgc cataccttta cgtaccgctt
    22801 tcagctccag aacttccgcc tgcagcagga tagcgtccag cagttcatcg atgccggtac
    22861 ccgctttcgc agatacgtgt acgaactggc tttcaccgcc ccactcttct ggcaggatgc
    22921 catactggga gagttcgttc ttaacacgat ccggatcggc ttctggttta tcaatcttgt
    22981 tcactgcaac caccaccggt acctgcgccg ctttcgcgtg ctggattgct tcgatggtct
    23041 gcggcatcac gccgtcgtcg gcagcaacaa ccaggactac gatgtccgtt gcctgcgcac
    23101 cacgagcacg cattgaagta aacgcggcgt gccctggggt gtccaggaag gtgatcatgc
    23161 cgttttcagt ttcaacgtgg tatgcaccaa tgtgctgggt aatgccgccc gcttcgccag
    23221 aggccacttt cgttgaacga atgtagtcca gcagagaggt tttaccgtgg tcaacgtgac
    23281 ccatgatggt cacaaccggc gcgcgcggtt cagccgcagc ccccgtgtca cggtcgctca
    23341 ttaccgcctc ttccagctcg ttttcacgac gcaggataac tttgtggccc atctcttcag
    23401 caaccagctg tgcggtttcc tgatcgataa cctggttgat ggttgccatt gcgcccagtt
    23461 tcatcatcgc tttgatgacc tgagagcctt taaccgccat cttgttcgcc agttcgccaa
    23521 cggtgatggt ttcgccgatc acaacgtcac ggttaacggc ctgagctggc ttctggaagc
    23581 cttgctgcag ggaagaacct ttacgttttc cgcctttacc tccacgtact gctgcgcgag
    23641 cttcttcacg atcagctttt gattcagcgt gtttgttgcc tttcttcgga cgcgctgctt
    23701 tcgcgttacg accacggcca cggccgcctt cgacttcacg atcgctttcg tcttctgcct
    23761 ggcgagcatg ttgagaagta gtgacgtgat aatcgctgga atcttcagtc ggttccgcgt
    23821 tatcagtcca tttgttttct tccgccatac gacgtgcttc ttcagcaacg cgacgtgctt
    23881 cttcttcgag tttacgacgc gcttcttctt cagctttacg cttgagctct gcagcttcct
    23941 gctcacggcg ggctttttca gcctgggcgt ttttagtcat atcgtcttgt tgattgctca
    24001 ctttgtcttt ttccgcagct tcacgtttcg cttgttcagc agcttcacgc ttagcttgtt
    24061 ctgcggcctc acgttcagct ttttgttgcg cctcgcgttt agccgattct tctgcctcac
    24121 gacgggcttg ctcttccgct gcaaggcgtt cagcctcttg cggatcgcgt ttcacaaagg
    24181 tgcgtttctt gcggacttcg atttgtaccg atttgctttt tccaccggta ccaggaatgt
    24241 taagggtgct gcgtgtttta cgttgcagcg tcaatttgtc cgggcctgaa tttttctgat
    24301 tcaggtggtc aatcaaagtc tgtttctctt gtgcggacac agagtcgtca gcagacttcc
    24361 ggatacctgc atcagcaaat tgctgtacca ggcgttccac ggaggtctgt cgctctgcgg
    24421 ccagcgtttt aatcgttaca tctgtcatgc tgttccttcc tgctacagtt tattacgctt
    24481 cgtcaccgaa ccagcaaata ttacgggcag ccataatcag tgctccggct ttttcgtcgg
    24541 tcaccccttc gatatcagcc agatcatcaa tgccctgttc ggcgagatct tccagcgtac
    24601 aaacgccacg ggcggccagt ttgaatgcca aatcacgatc tatcccttca aggttcagca
    24661 gatcgtcagc cggtttgtta tcaccgaggc tttcttcctg ggcctgtgca atggtggcca
    24721 gtgcattttt agcacgctcg cgcagtgctt caacggtcgg ctcatcaagg ccttcgattt
    24781 ccaacagctc tttcatcggc acataggcca gttcttccag cgtcgagaag ccttcttcta
    24841 ccagaacagt cgcgaagtct tcgtcgatgt cgagatattt ggtgaaggtg tcgatcgctg
    24901 cgtgcgcttc cgcctgatgc ttagcctgca ggtcgtcaac ggtcatcacg ttgagttccc
    24961 aaccgctcag ctgcgaagcc agacgcacgt tctgaccgtt acggccaatc gcctgcgcca
    25021 ggttaccggc ttcaacggcg atatccatgg tgtgtttatc ttcatccacc acgatagaag
    25081 caacgtctgc cggtgccatt gcgttaatca caaactgcgc cgggttatca tcccacagga
    25141 cgatatcgat acgctcgccg cccagttcag tagaaaccgc ctgaacacgc gcgccacgca
    25201 tacctacaca ggcacctacc ggatcgatac gtttatcgtt ggttttcacc gcgattttcg
    25261 cacgagaacc cggatcgcga gccgctgctt taatttcaat cacttcttcg ccgatttctg
    25321 gcacttcaat acggaacagt tcgatcagca tttccggctt ggaacgagtg acgaacagtt
    25381 gcgcgccacg cgcttccggg cgaacggaat agagcacgcc acgaacgcgg tcgccagggc
    25441 ggaagttttc acgcggcagc atatcttcgc gcaggatcac ggcttcagca ttgttgccca
    25501 gctccagaga gatgttgtcg cggtttactt ttttcaccac gccggtgatg atttcacctt
    25561 cgtgttcacg gaactgatca accaccatcg cacgttcggc ttcacgcact ttctgcacga
    25621 taacctgttt tgccgtctgg gtagtgatac ggtcaaaggt aacagactca atctgatctt
    25681 caacgtaatc gcccaggttc aggctttcat cttcataacg tgcggcttca agggtgattt
    25741 ccttggtcgg ctgggtgact tcatcaacaa ctaaccagcg acggaaggtg tcaaaatcac
    25801 cgcttttgcg atcgatctgt acgcggacgt cgatctcttg ttcatatttt ttctttgttg
    25861 ctgtcgccag cgcgctttcc aatgcttcga aaatcttctc gcgaggtagc gccttttcat
    25921 tggatacggc ttcaactaca gccaaaattt ctttgttcat cgcgggcttt tcacctcatc
    25981 cagactatta aaagtgggga accaggttcg ccttctggat attactcagc gcgaacactt
    26041 catctttacc ttcgacggta actgtgatca tttcaccgtc taccgctttg ataacgccct
    26101 gccatttacg acggttttgt accgccatac ggagaaccag agtcacctct tctccgacaa
    26161 aacgggcgta gtgttcagcc gtgaacagtg ggcgatcgag acccggtgag gagacttcca
    26221 ggttataagc aacggtgatg ggatcttcaa catccagcac agcacttacc tggtggctca
    26281 catcagcaca atcatcaaca ttgatgccat cttcactatc aatatagatg cgcagtgtgg
    26341 atgtgtgacc gcgaataaat tcgatgccaa ccagttcaaa acccagggcc tcaactggcg
    26401 cagtaatcat ctctgttaat ttttgctcta atgtggacaa gcccaccccc aagacataaa
    26461 aaaagggcct aaagcccagt tattctgtag tcagataaca aaaaaccccg ataaatcggg
    26521 gctttatata actgaaccct ataatcgcaa ctgcggtctg gagcactttc cagaaggatt
    26581 ttttcaaatc ccactacgaa ggccgaagtc ttcacagtat atttgaaaaa ggactctaag
    26641 ggaaagtggt tgcgggggcc ggatttgaac cgacgacctt cgggttatga gcccgacgag
    26701 ctaccaggct gctccacccc gcgcctgaaa ctcggcaaat tctactcgtt ttgggtaaaa
    26761 gatgcaaata ctgctgggat ttggtgtacc gagacgggac gtaaaatctg caggcattat
    26821 agtgatccat gccacatttt gtcaacgttt attgctaatc acgtgaatga atatccagtt
    26881 cactttcatt tgttgaatac ttttgccttc tcctgctctc ccttaagcgc attattttac
    26941 aaaaaacaca ctaaactctt cctgtctccg ataaaagatg attaaatgaa aactcattta
    27001 ttttgcataa aaattcagtg agagcggaaa tccaggctca tcatcagtta attaagcagg
    27061 gtgttatttt atgacgacga ttctcaagca tctcccggta ggtcaacgta ttggtatcgc
    27121 tttttctggc ggtctggaca ccagtgccgc actgctgtgg atgcgacaaa agggagcggt
    27181 tccttatgca tatactgcaa acctaggcca gccagacgaa gaggattatg atgcgatccc
    27241 tcgtcgtgcc atggaatacg gcgcggagaa cgcacgtctg atcgactgcc gcaaacaact
    27301 ggtggccgaa ggtattgccg ctattcagtg tggcgcattt cataacacca ccggcggcct
    27361 gacctatttc aacacgacgc cgctgggccg cgccgtgact ggtaccatgc tggttgctgc
    27421 gatgaaagaa gatggcgtga atatctgggg tgacggtagc acctataaag gaaacgatat
    27481 cgaacgtttc tatcgttatg gtctgctgac caatgctgaa ctgcagattt acaaaccgtg
    27541 gcttgatact gactttattg atgaactggg cggccgtcat gagatgtctg aatttatgat
    27601 tgcctgcggt ttcgactaca aaatgtctgt cgaaaaagcc tactccacag actccaacat
    27661 gcttggtgca acgcatgaag cgaaggatct ggaatacctc aactccagcg tcaaaatcgt
    27721 caacccgatt atgggcgtga aattctggga tgagagcgtg aagatcccgg cagaagaagt
    27781 cacagtacgc tttgagcaag gtcatccggt ggcgctgaac ggtaaaacct ttagcaacga
    27841 cgtagaaatg atgctggaag ctaaccgcat cggcggtcgt cacggcctgg gcatgagcga
    27901 ccagattgag aaccgtatca tcgaagcgaa aagccgtggt atttacgaag ctccggggat
    27961 ggcactgctg cacattgcgt atgaacgtct gttgaccggt attcacaacg aagacaccat
    28021 tgagcagtat cacgcgcatg gtcgtcagtt gggccgtcta ctgtaccagg ggcgttggtt
    28081 tgactcccag gcgctgatgc tgcgtgactc tctgcaacgc tgggttgcca gccagatcac
    28141 tggtgaagtt accctggagc tgcgccgtgg gaacgattat tcaatcctga ataccgtctc
    28201 agagaacctg acctacaagc cagagcgtct gacgatggaa aaaggcgact cggtgttctc
    28261 gccagatgat cgtattggtc aattgaccat gcgtaatctg gatatcactg atacccgaga
    28321 gaaacttttt ggttatgcca aaactggcct gctctcctcc tctgccactt caggcgtgcc
    28381 gcaggtggag aatatggaaa acaaaggcca gtaattcgac atcaaccctg cccttcaggg
    28441 ggggggttac cttgcttatc ctctgtaaac tcctttctga acatcacata atcgaaaaca
    28501 tcatggtttg catccacaac ccgtgagtct cctttatagt gtgcaatcac ttcctcaagc
    28561 gtttgcggct gttccggctt tgttaccccc atccacgcat taataaggta attattgtaa
    28621 gctgtcgaaa agatgttgtt ttccgttgtg cgatccacgc catccccaag aacggggcta
    28681 taccagataa acatcgggac atgatatgcc tgctggctag cctccctgcc tccatgaaaa
    28741 tagacgttct tcttcgttgg gtcacgttcc aggccgtggt cggcaaaata catgaccgag
    28801 gcgcggcgat cttttaataa ttcaaaaacc tgacctagca aactatctgt gtaatgaatg
    28861 gagttgtcat agcaggcatc ctgatcgtcc tgcggttgaa acacggcgct ggattgcgga
    28921 taggcgctac aagccggttc atggcttcca tttaaatgaa gaacaatcag tttcttttgc
    28981 tgcgtatttt gctgtaatgc ttgcgataaa tgcggcaaca acaattcatc aaatcctctg
    29041 acataaactg tttccatggc gcgcatggcg atactggtaa ctgcagtacc attctgccga
    29101 aaagcggatt gcgagcttag ccagaaagtc tgaaatcctg cttgattagc catattaata
    29161 atgttgtcgg ggtaattatg aatgtcatga ctcaaaacag aatcagcagt taaagaaagg
    29221 ggaaccgaca gcgcagtgta aggtgcgctg cttattgctt gattaaacag tttgatctgt
    29281 tttctttgtg cttcaacttg cggtgtcgta gagcgtgtat atccatacaa agacatattg
    29341 tcgacacgta cagactcccc cacaatcaac acgtaggtat caatacctgt atccctgact
    29401 gataattgaa aatacggcac cgtgtttgca attgagagta atctttgatg ctctttcgct
    29461 gctaaagcaa aatagttgag attgaaaaac ggcgtatagg tagcaaatcg cgacgctagt
    29521 atatatggac tgaacgtttt tttatttttt gcatctttat aagcaaattg acaagcggaa
    29581 aataaactgc ccgaaatgac aatcagcaat aatattcctg tcactttttt tgtcggcaag
    29641 gaaacatcat attttattat tactgcccaa aaaagaaggg ataaaaaagc aaaggcacat
    29701 agataaggga tatacatccc cagcattttg acaacttcat ccggatcact ctggagcaca
    29761 ctaatcgcaa atccatcatt gaaagttgta ccaaaggtac accatgaata gaggctaata
    29821 ctcatgtctg ccgcagtcag taacacaaat ggtgcggcaa caagcaggcg aagcggaagg
    29881 gatgatatac gttttacaac caggatggtc aggacgaaga acagcaatcg ctgaaccata
    29941 tgcgcgccgg aagaggcgac taagttcgta ataccaaaaa caataacaca aagatacaac
    30001 aaccaatgag atttaaaact tctagcaaat ttgttgaata ctgtcatcca gaaatccaag
    30061 ttcacaacca atataaacaa ttatcaacaa tgttcaattt tatatcagac atgtttttca
    30121 actctgatcc atatcagacc gaaacactgt tagttttttc tttttaaatg atgcggccat
    30181 tgcgttctca gtaattaaat aacattatca atgcgtctct aaacattacg cagaacgtag
    30241 ccatcagtag ttatactgac aggagcagga tggtttatcg agaagtaaac atatccgtat
    30301 tcgtaccgga actggagttg acacaataaa gtgccaatta tgtcagcaga agggaaaagt
    30361 ttataactaa ggcgtaccgg caccatcgtt tcaaggtacc agctacgagt aaagcaactg
    30421 gacgagatac agatacctga caaccattcc tcagaccagg accaaaacga aaaaagacgc
    30481 ttttcagcgt ctcttttctg gagtttggta ccgaggacgg gacttgaacc cgtaagccct
    30541 attgggcact accacctcaa ggtagcgtgt ctaccaattc caccacctcg gcacggatac
    30601 tactttttag ttcgggatat cgctggtcgg cttagccgga gcagctggtt gagtttgttc
    30661 ggttttcgcc ggtgcactca gattttccca ttcgctacct ttattggttt tgttgctgtt
    30721 gatgttaccc agcaccagac tgatgatgaa gaataacgtt gccagcagcg ccgtcatgcg
    30781 ggtcatgaag ttaccagaac cacttgaacc aaacagcgta gcggaagcgc ctgctccgaa
    30841 ggaggctccc atatcagcgc ctttaccttg ctgcagcatg atcagaccaa caaggccaat
    30901 tgccacaata aggaaaacta ccaaaagagc ttcgtacata atcaacctgt tccttgcgga
    30961 gttgccgcgt accaatgctt caaccaataa agcgggagtt tttaatcttt cccactgaag
    31021 cgggtgtgaa tactaaccaa agcgaatgac cttcgcaagg gcaattttat cgcattgtat
    31081 caactgcgga aaaaaacagc aaaaccgatg tgttcgctga gaaaaaaggc gacaatcgcc
    31141 gcctttttag ccagtcattt atcgttttaa acggctttta ctgcatcggc gatgcggtgt
    31201 gcaaattcag tcacctgcgc ttcgtcttcg ccttccacca tcacgcgaat taacggttcg
    31261 gtgccggatt tacgcagcaa cacgcgtcca cggttgccca gcgcagcttc aacctctgcg
    31321 gtcacggctt taactgactc atgctcaagc ggatcgccgc tacctgcggt gtaacgcacg
    31381 ttaaccagaa tctgcgggaa cattttcatg ccgctgcaaa ggtcgtgcag gctcatatgg
    31441 ttacgtgcca tcgccgccag cacctgcaag ccagcaacga tgccgtcacc ggtagtggtt
    31501 ttatccagca ggatcacatg accggaattc tctgcaccga tacgccagcc tttctcctgc
    31561 attttttcca gtacgtagcg gtcacccact ttcgcgcgcg caaatggaat acctaactgt
    31621 ttcagcgcca gctcaagccc catgttactc atcaatgtac ccacagcacc accacgcagc
    31681 tggccctgac gaagaccttc acgcgcgatg atatacatga tctgatcacc atcgacttta
    31741 ttgccttcat ggtcaaccat aatcacgcga tcgccgtcgc cgtcgaaggc aataccgaga
    31801 tccgcttttt cagccagcac acgagcctgg agcgcgcgaa cgtcggtagc ccccacttcg
    31861 gcattgatgt ttacaccgtt cggctcacaa ccgatagcga taacgttcgc ccccagttca
    31921 cgcagcacgt tcggcgcgat gtgataagtc gcaccgtttg cgcaatccac cacaatcttc
    31981 agttcgctga ggctaagttc gttcgggaac gtggctttgc aaaactcgat atagcgaccc
    32041 gcagcatcaa cgatacggct ggctttaccc agttctgccg aatcaacaca gctgatctct
    32101 ttttccattt ccgcttcgat ggcctcttct accgcatccg gtagtttggt gccgtcgata
    32161 gagaaaaatt taatgccatt atcgtagaac gggttatgcg atgcagatat cacaattccg
    32221 gcctctgcgc ggaaggtacg cgtcagataa gccacggccg gtgttggcat cgggccagtg
    32281 aagagtgcgg aaaggcccgc tgccgccaga cccgcttcca gtgctgactc cagcatatag
    32341 ccagaaatac gcgtgtcttt actaataatg atcttacggg agccgtggcg cgccagcact
    32401 ttacccgcgg cccaacccag cttaagcaca aaatcaggtg tgatcggcgc atcccctaca
    32461 cgaccacgaa tcccatcggt accgaaatat ttacgattac tcatagcgtt tgttttcctt
    32521 tgcagacaga gtggcttcca ccacccgcat cgcttctacg gtttctttga cgtcatgaac
    32581 acgaataatg tgcgcgcctt gcattgcggc aatgaccgca caggccagac taccgctcag
    32641 gcgctcggac ggccccacgt tcagcagctg cccaatcatc gattttcgtg acatacctac
    32701 caacagcggc aggttgaaat ggtgaaattc agccaggcgc gccagtaatg aatagttatg
    32761 ggagagattt ttaccgaaac cgaatccggg gtcgagcaac aatttctctt ttgcgatacc
    32821 cgcctgctcg caacgtgcta tttgctcaat aaagtagcga ttcacttctg caaagacatc
    32881 gtcatacttc ggagcttcct gcatggtttt tggatttccc tgcatatgca tcagacaaac
    32941 cggtaaaccg gtttctgccg ccgcctccag agcgccaggt tcggaaaggg agcggatatc
    33001 gttaataatg tgagcgccaa ctttcgctga ctcacggatg acttctggtt tggatgtatc
    33061 taccgagagc cagacttcga agcgttgagc aattgcctca accacaggaa taacacgttg
    33121 caactcttct tcaacgctaa cttccgccgc ccctgggcgc gtggactcgc caccaacgtc
    33181 aatgatcgtc gcgccagcgt tgatcatcag attcgcatgt ttcaccgcat ctatcagcga
    33241 gttatgcgtg ccaccatccg aaaaggaatc aggcgtgacg ttgaggatcc ccattacgtg
    33301 aggatggcta aggtccagtg aagtgccctg ggcaaagagt ttcatggtgt tatccctggt
    33361 atgaattgat aagaaaaaac cccggagcac gccccggggt tttcggtaca aatacagtca
    33421 tctgatgcgg gaacttactt gtcgcctaac tgctctgaca tggtgttacc cgggttcggc
    33481 gtacgcggtt catcaaccgg acgaggagcc tttggactac cattgtcgcc agaattgtta
    33541 gaagcgcctg gttcttccca gcccgctggc ggacgtacat cgcgacgtgc catcaggtca
    33601 tcaatctgcg gtgcgtcgat agtctcatat ttcatgagag catctttcat cgcatgcaga
    33661 atatccatat tgtcggtcag aagctgacgc gcacgattat agttacgctc aatcagtgct
    33721 ttcacttcct ggtcgatgat acgtgcagtt tcatcggaca tatgtttcgc tttcgctacg
    33781 ctacggccga ggaacacttc accttcttct tccgcgtaca gcagtggacc caatttctca
    33841 gagaagcccc actgagtcac catattacgc gccaggttgg tcgcaacttt aatatcgttg
    33901 gacgcaccgg tagaaacatg ttccggcccg tagatgatct cttctgccag acgaccaccg
    33961 tacagcgtag aaatctggct ttccagtttc tgacggctgg cgctgattgc gtcgccctca
    34021 ggcaagaaga aagtcacacc cagcgcacga ccgcgtggga taatcgtcac tttgtgcacc
    34081 ggatcgtgtt ccggcaccaa gcgaccgata atcgcatgac ccgcttcgtg gtaagccgtc
    34141 gattctttct gcgcttccgt catcaccatg gagcgacgtt ccgcacccat catgatttta
    34201 tctttcgctt tttcgaactc aatcatcgac acaacgcgtt tgttgccacg agcagcgaac
    34261 agtgccgctt cgtttaccag gttcgccagg tcagcaccgg agaaaccagg agtaccacgg
    34321 gcaatgattg ccgcgtcgat atcgggtgcc aatggtacgc gacgcatgtg aactttcagg
    34381 atctgctcac gaccgcgaac atctggcaag ccaaccacaa cctgacggtc gaaacggcca
    34441 ggacgcagca gggctgggtc aagaacgtcc ggacggttag tcgcggcgat aacgatgata
    34501 ccttcgttac cttcgaagcc atccatctca accagcatct ggttcagagt ctgttcacgt
    34561 tcatcgtgac caccgcccag accagcgcca cgctggcggc ctacggcgtc gatttcatcg
    34621 ataaagatga tgcacggtgc cgctttcttc gcctgttcga acatgtcacg aacacgggat
    34681 gcacccacac cgacgaacat ttctacgaag tcagaaccgg agatagtaaa gaacggaact
    34741 ttcgcttcgc ctgcaatcgc tttcgccagc aacgttttac cggtacccgg aggaccgacc
    34801 atcaggacgc ctttcgggat cttaccgccg agtttctgga agcggctcgg ctcgcgcaga
    34861 tactctacca gttcagcaac ttcttctttt gcttcgtcgc agcccgcaac gtcagcaaag
    34921 gtcgttttga tctgatcttc cgtcagcatg cgcgctttgc tcttaccaaa cgacatggca
    34981 cctttgccac cgccgccctg catttgacgc atgaagaaga tccagacacc aatcagcaac
    35041 agcatcggga accaagagat gaagatagaa gccagcaggc ttggttcttc aggcggttca
    35101 ccgacaacct tgacgttctt ggtcaacagg ttatccagta atttcggatc ctgaaccgga
    35161 atgtaagtgg tataacggtt actatctttc ttggtaacgt tgatttcacg tccgttgata
    35221 cgcgcttcac gaacctggtc gttattgacc tcttgtagga aggtagagta atccacctta
    35281 cggccattag actcgctggg cccaaagctc tggaatactg acatcagcac aacggcaatg
    35341 accagccaga gtattaggtt tttcgccatg tcactcaagg gattaacctc ttattacaac
    35401 tgtgttaaaa acagcgtcag gatactctat atccagcatc tttcaaactt tcgtctgaaa
    35461 tctcccggtt agggtttacg cccggtcgct acaatataca cttcccgcga acgtgcacga
    35521 gaagagtccg gcttacgaac tttgaccttc gtaaacaggg agcgaatttc ccttagatac
    35581 tcatcgaaac cttcgccctg gaacaccttc actacaaaac tgccacctgg cgctaataca
    35641 tcacgacaca tttctaacgc cagttccacc agatacatgg cacgggggat atccaccgcc
    35701 ggtgttccgc tcatgtttgg tgccatatcg gacatgacaa cctggacttt gctgtcgcca
    35761 acgcgctcca gcagtgcttt catcaccagt tcatcacgaa aatcgccctg aagaaagtcc
    35821 acaccaacga taggatccat aggtaaaaga tcgcaagcga tgatgcggcc tttgccgcca
    35881 atttgggtga ccacatattg tgaccaacca cccggagcag caccaaggtc gacaaccgtc
    35941 attcccggtt taaagagttt gtcactttgc tgtatttcat caagtttaaa ccaggcacgg
    36001 gaacgtaacc cctttttctg tgcctgttga acatatttat cgctaaagtg ttcctgaagc
    36061 cagcggctgg agctggcaga acgcttctta cctgtcattt aactttccca tggggataac
    36121 tcatcgtaac caattgcgta aatttttacg cgcctatttg gtgatatatg ggagatggcg
    36181 gtagaatgac ccgttttcaa tcccaacgta agcaaaaaat acgatgaatc tgagtactaa
    36241 acaaaaacag cacctgaaag gtctggcaca tccgctcaag ccagttgttc tgcttggcag
    36301 taatggtttg accgaagggg tgctggccga gattgaacaa gcgttagagc accatgaact
    36361 catcaaggtg aaaatcgcca ccgaagatcg cgaaacaaaa accttgatcg tggaagctat
    36421 cgtgcgcgaa accggcgcct gtaatgtaca ggtcatcggt aaaacgctgg tgctttatcg
    36481 cccaactaaa gaacgtaaaa tctcgctgcc acgctaagat tatcctaaag ttacacacat
    36541 ttgctgtgta aaacgagggg ttttccgcag gcaggagagc aaaatgccac gctctgttcg
    36601 ttgataaaag gccgcatagc ggcctttttc ctttctttac aatacatcaa catcttgatg
    36661 tattgggtaa ttcttacagg tattccacct taattacttc aaattctact tcgccgcccg
    36721 gcgttttgat gaccacaaca tcatcttctt ctttgccgat caggccacga gcaataggcg
    36781 agtttacaga aatcaggttt tgtttaaagt cagcttcgtc atcgccaacg atgcgataag
    36841 tctgttcttc gtcagaatcc agattcagca ccgttacggt agcaccaaaa ataacgcgcc
    36901 cattgttggg cattttggtg acatcaatca cctgcgcgtt cgacagcttg gcttcgatgt
    36961 ctttaatacg gccttcgcag aaaccctgct gttcacgagc tgcgtggtat tcggcgtttt
    37021 ctttcaggtc gccatgctca cgcgcttccg cgatagcagc aatgatttca ggacggcgca
    37081 cagatttcag aaaatccagc tcttcgcgta atttttcagc gccgcgtaag gtcatcggaa
    37141 tagcttgcat ttgttatacc tcttgaatat tcctgatggg gcaagtcttc acccaccccg
    37201 gctgttcggc ctgcccggca taactcctca ccgggaccag aagcaaaaaa ataccgaccc
    37261 gggtacaagt cccaggtcag ctacaattca cattttgata gtcattttac cctgaagttc
    37321 ccgaagggtc atcgtttact ttatagggcg ttgcgccgta gtatgacggc tcgattccag
    37381 gttgttagcg cgagattatg cgattttcca gatttatcat cggattgacc agctgtatag
    37441 cgttcagtgt tcaggccgcg aatgttgatg agtacgttac tcaactcccc gctggtgcca
    37501 accttgccct gatggtgcaa aaagtcggcg cgtcggcccc cgctattgat taccacagtc
    37561 agcagatggc gctgcccgcc agtacgcaga aagtgattac tgcgctggcg gcgttgattc
    37621 aactcggccc cgattttcgt ttcaccacga cgcttgaaac caaaggcaat gtggaaaacg
    37681 gcgtacttaa gggtgactta gtggcgcgat ttggtgccga tccgacgtta aaacgtcagg
    37741 atattcgcaa tatgatcgcg actttgaaaa aatctggcgt caaccaaatc gatggcaatg
    37801 tgttgataga tacctccatt ttcgccagcc acgataaagc ccccggctgg ccatggaatg
    37861 acatgacaca atgctttagc gctccgcctg ccgctgccat agttgaccgc aactgtttct
    37921 ccgtctcgct ctacagtgcc ccaaaacctg gtgatatggc ttttatacgc gtggcatctt
    37981 attaccccgt tacgatgttc agccaggtac gcaccctccc ccgaggttct gccgaagcgc
    38041 aatactgcga actggatgtc ataccaggcg acctgaaccg ctttacgctg acgggatgcc
    38101 tgccacaacg ttctgagccg ctcccgttgg cttttgccgt gcaggatgga gccagctatg
    38161 ccggggcaat tctgaaagat gagttaaaac aggcaggtat cacctggagc ggaacactgc
    38221 tgcgccagac tcaggttaac gaacctggaa cggtagttgc cagtaaacag tcggccccgt
    38281 tgcacgatct gcttaagatt atgctgaaaa agtcggacaa catgatcgcc gatacggttt
    38341 tccgcatgat aggccatgcg cgcttcaatg tgcctggaac atggcgggcc gggtcggacg
    38401 ccgtgcgtca gatcctgcgc cagcaagccg gtgtcgatat tggaaacacc attattgccg
    38461 atggttcagg gctttcgcgg cataacctga ttgcccccgc caccatgatg caggtgttgc
    38521 aatacattgc ccaacacgac aatgaactta actttatctc catgctgccg ctggcgggct
    38581 atgatggctc tttgcagtac cgtgcaggtc tgcatcaggc gggcgtggat ggaaaagtct
    38641 cagcgaaaac cggttcgttg cagggggtat ataacctggc gggattcatt accacagcga
    38701 gcgggcaacg aatggcgttt gtacaatatc tttctggcta tgcagtagaa ccggcggatc
    38761 agcgtaatcg ccgtattccg ttagtgcgtt ttgaaagccg tttgtataaa gatatttatc
    38821 agaacaatta gtcaaaaaga aaccccggca catgg
//
LOCUS       DAJVUP010000018        37822 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.018, whole genome shotgun sequence.
ACCESSION   DAJVUP010000018 DAJVUP010000000
VERSION     DAJVUP010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37822
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.018"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..380
                     /locus_tag="OQQ75_000887"
     CDS             <1..380
                     /locus_tag="OQQ75_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1975300.1"
                     /translation="ICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDEKF
                     MNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSHRDFLNLKEIKLEHPLPSIKLYI
                     SYNKSSLNNLVFSRFIDRLNESF"
     gene            527..2044
                     /locus_tag="OQQ75_000888"
     CDS             527..2044
                     /locus_tag="OQQ75_000888"
                     /inference="COORDINATES: protein motif:HMM:NF014273.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
                     /protein_id="HCS1975301.1"
                     /translation="MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLML
                     HLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNS
                     LSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPA
                     AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTW
                     YANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVS
                     GVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEDDRIKAINEIRMAIHQ
                     VSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDK
                     NAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQIT
                     AMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK"
     gene            complement(2045..3194)
                     /gene="ybdL"
                     /locus_tag="OQQ75_000889"
                     /pseudo
     CDS             complement(2045..3194)
                     /gene="ybdL"
                     /locus_tag="OQQ75_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308666.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-oxo-acid transaminase"
     gene            3303..4391
                     /gene="hcxA"
                     /locus_tag="OQQ75_000890"
     CDS             3303..4391
                     /gene="hcxA"
                     /locus_tag="OQQ75_000890"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcxA"
                     /protein_id="HCS1975302.1"
                     /translation="MPHNPIRVVVGPANYFSHPRSFNHLNDFFTDEQLSRAVWIYGKR
                     AIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA
                     KALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
                     NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALA
                     DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT
                     KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP
                     VESIHYLPVTLTPDTLRAAFEKVESFKA"
     gene            complement(4401..4598)
                     /locus_tag="OQQ75_000891"
     CDS             complement(4401..4598)
                     /locus_tag="OQQ75_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1975303.1"
                     /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY
                     EEFFRERQDARYGGKGGARCC"
     gene            complement(4780..6885)
                     /gene="cstA"
                     /locus_tag="OQQ75_000892"
     CDS             complement(4780..6885)
                     /gene="cstA"
                     /locus_tag="OQQ75_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein CstA"
                     /protein_id="HCS1975304.1"
                     /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI
                     YLIAYRFYGLYIAKNVLAVDPKRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG
                     VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRI
                     GEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL
                     APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA
                     CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA
                     MNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL
                     AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG
                     LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC
                     AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSG
                     NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP
                     YEPMPENVEEIVAQAKGAH"
     gene            complement(7066..7479)
                     /gene="entH"
                     /locus_tag="OQQ75_000893"
     CDS             complement(7066..7479)
                     /gene="entH"
                     /locus_tag="OQQ75_000893"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proofreading thioesterase EntH"
                     /protein_id="HCS1975305.1"
                     /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDT
                     RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC
                     QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG"
     gene            complement(7482..8228)
                     /gene="entA"
                     /locus_tag="OQQ75_000894"
     CDS             complement(7482..8228)
                     /gene="entA"
                     /locus_tag="OQQ75_000894"
                     /EC_number="1.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
                     EntA"
                     /protein_id="HCS1975306.1"
                     /translation="MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY
                     PFATEVMDVADAGQVAQVCQRLLAETERLDVLINAAGILRMGATDQLSKEDWQQTFAV
                     NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL
                     ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI
                     ANTILFLASDLASHITLQDIVVDGGSTLGA"
     gene            complement(8228..9085)
                     /gene="entB"
                     /locus_tag="OQQ75_000895"
     CDS             complement(8228..9085)
                     /gene="entB"
                     /locus_tag="OQQ75_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis bifunctional
                     isochorismatase/aryl carrier protein EntB"
                     /protein_id="HCS1975307.1"
                     /translation="MAIPKLQAYALPESHDIPQNKVDWAFELQRAALLIHDMQDYFVS
                     FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS
                     PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT
                     ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPVPASKAAL
                     REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW
                     WKLLSREVK"
     gene            complement(9099..10709)
                     /gene="entE"
                     /locus_tag="OQQ75_000896"
     CDS             complement(9099..10709)
                     /gene="entE"
                     /locus_tag="OQQ75_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2,3-dihydroxybenzoyl)adenylate synthase EntE"
                     /protein_id="HCS1975308.1"
                     /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID
                     GELQLSYRELNQAADNLACTLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL
                     ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLHNDSGE
                     HNLQDAINHPADGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC
                     QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVT
                     ALVPPAVSLWLQALAEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM
                     AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR
                     GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL
                     LLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE
                     CVDSLPLTAVGKVDKKQLSQWLASRASA"
     gene            complement(10719..11894)
                     /gene="entC"
                     /locus_tag="OQQ75_000897"
     CDS             complement(10719..11894)
                     /gene="entC"
                     /locus_tag="OQQ75_000897"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase EntC"
                     /protein_id="HCS1975309.1"
                     /translation="MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAV
                     NGDSPDSPFQQKLAALFADAKVQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEK
                     QASARRFTRSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDA
                     AIDSGVLLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR
                     QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWH
                     LATPFEGKANSQENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWC
                     DSEGNGEWVVTIRCAKLRENQVRLFAGAGIVLASSPLGEWRETGVKLSTMLNVFGLH"
     gene            12269..13225
                     /gene="fepB"
                     /locus_tag="OQQ75_000898"
     CDS             12269..13225
                     /gene="fepB"
                     /locus_tag="OQQ75_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-enterobactin ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS1975310.1"
                     /translation="MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLES
                     QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY
                     IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG
                     EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM
                     LEQLGFTLAKLPTGLNASQSQGKRHDIIQLSGENLAAGLNGESLFLFAGDQKDADAIY
                     ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERLKALF"
     gene            complement(13229..14479)
                     /gene="entS"
                     /locus_tag="OQQ75_000899"
     CDS             complement(13229..14479)
                     /gene="entS"
                     /locus_tag="OQQ75_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin transporter EntS"
                     /protein_id="HCS1975311.1"
                     /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI
                     QMMTHSTWLVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN
                     ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV
                     ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFR
                     FLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAEIGFLYAAIPLGAAIGAL
                     TSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYT
                     MLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV
                     LLLLVLVELRRFRQTPPQVTASDS"
     gene            14590..15594
                     /gene="fepD"
                     /locus_tag="OQQ75_000900"
     CDS             14590..15594
                     /gene="fepD"
                     /locus_tag="OQQ75_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-siderophore ABC transporter permease"
                     /protein_id="HCS1975312.1"
                     /translation="MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAF
                     SGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGAS
                     FAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA
                     VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALN
                     SLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGA
                     DHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA
                     "
     gene            15591..16583
                     /gene="fepG"
                     /locus_tag="OQQ75_000901"
     CDS             15591..16583
                     /gene="fepG"
                     /locus_tag="OQQ75_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter permease"
                     /protein_id="HCS1975313.1"
                     /translation="MIYVSRRLLITCLLLISACVVAGIWGLRSGAVTLETSQVFAALM
                     GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS
                     GVLVAMVLFGQDLTAIALAAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA
                     FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLE
                     MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW
                     GLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK"
     gene            16580..17395
                     /gene="fepC"
                     /locus_tag="OQQ75_000902"
     CDS             16580..17395
                     /gene="fepC"
                     /locus_tag="OQQ75_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS1975314.1"
                     /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC
                     GKSTLLRTLSRLMTPAHGHVWLDGEHIKHYASKEVARRIGLLAQNATTPGDITVQELV
                     ARGRYPHQPLFTHWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ
                     ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR
                     EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLERTAPSTANS"
     gene            complement(17392..18525)
                     /gene="fepE"
                     /locus_tag="OQQ75_000903"
     CDS             complement(17392..18525)
                     /gene="fepE"
                     /locus_tag="OQQ75_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
                     /protein_id="HCS1975315.1"
                     /translation="MSSLNIKQGSDAHFSEYPLASPSSNEIDLLNLIEVLWRAKKTVM
                     AVVFAFACAGLLISFILPQKWTSSAVITPAEAIQWQDLEKTFTKLRVLDLDVNIDRGG
                     AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS
                     KKKDEPSLYTSWTLSFTAPTSKEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFE
                     KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD
                     GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKANVNDVNFTPFKYQLSPSLPVKKD
                     GPGKAIIVILSALIGGMVACGSVLLRYAMASRKQDAMMADHLV"
     gene            complement(18740..22621)
                     /gene="entF"
                     /locus_tag="OQQ75_000904"
     CDS             complement(18740..22621)
                     /gene="entF"
                     /locus_tag="OQQ75_000904"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin non-ribosomal peptide synthetase
                     EntF"
                     /protein_id="HCS1975316.1"
                     /translation="MSQHLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELTGEVDAPLL
                     ARAVVDGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQ
                     ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTW
                     LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGR
                     SASADILRLKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDYAAGFIFM
                     RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRD
                     SGRAAGDEPLFGPVLNIKVFDYQLDIPGVQAQTHTLATGPVNDLELALFPDEHGDLSI
                     EILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQINATQV
                     EIPETTLSALVAEQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSV
                     AVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRF
                     ADVPDLTNLCYNAPLKPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL
                     LWMQNHYLLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFF
                     AEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTSV
                     PLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGV
                     AGDLYLTGIQLAQGYLGRPDLTASRFIADPFVPGERMYRTGDVARWLDNGAVEYLGRS
                     DDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG
                     LPLDTSALQAQLRETLPPHMVPVVLLQLPLLPLSANGKLDRKALPLPELKAQAPGRAP
                     KAGSETIIAAAFASLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVM
                     VASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYI
                     DPQWSIIGIQSPRPNGPMHTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQG
                     IAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS
                     TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAEL
                     DIYRQDCAHVDIISPGAFVKIGPIIRATLNR"
     gene            complement(22618..22836)
                     /gene="ybdZ"
                     /locus_tag="OQQ75_000905"
     CDS             complement(22618..22836)
                     /gene="ybdZ"
                     /locus_tag="OQQ75_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis protein YbdZ"
                     /protein_id="HCS1975317.1"
                     /translation="MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQ
                     SQESCQQWLEAHWRTLTPANFTQLQEAQ"
     gene            complement(22839..24041)
                     /gene="fes"
                     /locus_tag="OQQ75_000906"
     CDS             complement(22839..24041)
                     /gene="fes"
                     /locus_tag="OQQ75_000906"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin esterase"
                     /protein_id="HCS1975318.1"
                     /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS
                     PIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIF
                     SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGRGHAVSALEMPQAPLQPGWDCPQA
                     PEIPAKEIIWKSERLKNSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSL
                     THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTV
                     VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG
                     LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW
                     QPLFHDRS"
     gene            24284..26524
                     /gene="fepA"
                     /locus_tag="OQQ75_000907"
     CDS             24284..26524
                     /gene="fepA"
                     /locus_tag="OQQ75_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore enterobactin receptor FepA"
                     /protein_id="HCS1975319.1"
                     /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN
                     LQAPGVSTITADEIRKNPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPE
                     NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA
                     GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD
                     KTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS
                     RQGNLYAGDTQNTNSDAYTRSKYGDETNRLYRQNYSLTWNGGWDNGVTTSNWVQYEHT
                     RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN
                     QQRMKDLSSNTQALTGANTGGAIDGVSATDRSPYSKAEIFSLFAENNMELTDSTIVTP
                     GLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG
                     CYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG
                     QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII
                     PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS
                     ATRDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM
                     SVNTHF"
     gene            26699..27319
                     /gene="entD"
                     /locus_tag="OQQ75_000908"
     CDS             26699..27319
                     /gene="entD"
                     /locus_tag="OQQ75_000908"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415115.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin synthase subunit EntD"
                     /protein_id="HCS1975320.1"
                     /translation="MKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGR
                     KRKAEHLAGRIAAIYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGATALAVVSRQ
                     PIGVDIEEIFSAQTATELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEI
                     QTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIVITLCQHD"
     gene            complement(27441..27593)
                     /gene="hokE"
                     /locus_tag="OQQ75_000909"
     CDS             complement(27441..27593)
                     /gene="hokE"
                     /locus_tag="OQQ75_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokE"
                     /protein_id="HCS1975321.1"
                     /translation="MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVL
                     AYEPKK"
     gene            28046..29164
                     /locus_tag="OQQ75_000910"
     CDS             28046..29164
                     /locus_tag="OQQ75_000910"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1975322.1"
                     /translation="MPLPDFHVSEPFTLGIELEMLVVNPPGYDLSQDSSILIDAVKNK
                     ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAAADHHLEICGGGTHPF
                     QKWQRQEVCDNERYQRTLENFGYLIQQVTVFGQHVHVGCASGDDAIYLLHGLSRFVPH
                     FIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID
                     SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD
                     YLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEAL
                     HRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWAGD"
     gene            29230..29478
                     /locus_tag="OQQ75_000911"
     CDS             29230..29478
                     /locus_tag="OQQ75_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1158 domain-containing protein"
                     /protein_id="HCS1975323.1"
                     /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLTLAQKLVTMFHL
                     MDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD"
     gene            29543..29911
                     /locus_tag="OQQ75_000912"
     CDS             29543..29911
                     /locus_tag="OQQ75_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1975324.1"
                     /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS
                     ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLIND
                     SWNLVVDGLAKRDQKRVRPG"
     gene            30005..30658
                     /gene="nfsB"
                     /locus_tag="OQQ75_000913"
     CDS             30005..30658
                     /gene="nfsB"
                     /locus_tag="OQQ75_000913"
                     /EC_number="1.5.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NAD(P)H nitroreductase"
                     /protein_id="HCS1975325.1"
                     /translation="MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQ
                     PWHFIVASTEEGKARVAKSAAGNYVFNERKILDASHVVVFCAKTAMDDAWLKLVVDQE
                     DADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLD
                     AVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV"
     gene            30766..32013
                     /gene="ybdG"
                     /locus_tag="OQQ75_000914"
     CDS             30766..32013
                     /gene="ybdG"
                     /locus_tag="OQQ75_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel YbdG"
                     /protein_id="HCS1975326.1"
                     /translation="MQDLISQVGDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV
                     LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC
                     AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
                     IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGT
                     VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF
                     LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESILNLRRMTNIGTFRAYLNEY
                     LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE
                     FGLRLHQSPAGNDIRSLAGAFKQ"
     gene            complement(32081..33457)
                     /gene="pheP"
                     /locus_tag="OQQ75_000915"
     CDS             complement(32081..33457)
                     /gene="pheP"
                     /locus_tag="OQQ75_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine transporter"
                     /protein_id="HCS1975327.1"
                     /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG
                     IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL
                     SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET
                     EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVI
                     MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSN
                     SSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR
                     VSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF
                     RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFV
                     AFKTLRRK"
     gene            complement(33559..36703)
                     /gene="cusA"
                     /locus_tag="OQQ75_000916"
                     /pseudo
     CDS             complement(33559..36703)
                     /gene="cusA"
                     /locus_tag="OQQ75_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter permease
                     subunit CusA"
     gene            complement(36715..>37822)
                     /gene="cusB"
                     /locus_tag="OQQ75_000917"
     CDS             complement(36715..>37822)
                     /gene="cusB"
                     /locus_tag="OQQ75_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter periplasmic
                     adaptor subunit CusB"
                     /protein_id="HCS1975328.1"
                     /translation="RKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVR
                     IDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVG
                     DKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI
                     ATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWL
                     VKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWL
                     QLNTASEPMLLIPSQGLIDTGSEQRVITIDADGRFVPKRVAVFQASQGVTALRSGLAE
                     GEKVVSSGLFLIDSEANISGALERMRSESATHAH"
BASE COUNT         9072 a        10550 c         9637 g         8563 t
ORIGIN      
        1 taatttgtag taataagcat ccgcgaatta ctgacaatag cacttatgaa caaattatgg
       61 cagaagagtt cacccaatta atatccaaat cagcaggagt tgatgatatt caaatggaaa
      121 tagacgagaa gtttatgaat cgcaaaattt catttcgtgg ttcctctttg ctgacaataa
      181 ttaatagcat tgcagttaca gatttactgg gaatagtccc ctatgaactt tataactccc
      241 accgtgactt tcttaattta aaagagataa aactagaaca tccgttacct tcaataaagc
      301 tttacatttc ctataataaa tcttctttaa ataatttggt gttctcccga tttattgacc
      361 gtctaaatga gagtttttga tatataacta cagacagcta ctataacttt catctattta
      421 ttcacagcgc gaatgaaaaa taaaacactc tgctttacag tgtttacttt ataattaaca
      481 gtcttatctc actgttcacc ctgtaacgtt cagagagcgt cttcagatgt ctatttataa
      541 aattcctctt ccgctcaata ttctggaagc tgcacgagag cgtattacct ggacactcaa
      601 caccctaccc cgcgtttgtg tctcattttc tggcggcaaa gactctggtt taatgctgca
      661 tctgacagcc gaacttgccc gacaaatggg caaaaaaatc tgcgttttgt ttatcgactg
      721 ggaggcgcaa ttctcttgca ctattaacta tgttcagtcc ctgcgcgagt tgtacaccga
      781 tgtcatcgaa gagttttact gggttgcgct cccgcttacg acgcaaaatt ccctttcaca
      841 ataccaaccc gaatggcagt gctgggaacc tgatgtcgaa tgggtgcgtc agcccccgca
      901 agatgcgata accgatcctg actttttctg cttttaccag ccaggcatga ccttcgaaca
      961 atttgtacgt gagtttgccg aatggttttc acaaaaacgt ccggcggcga tgatgatcgg
     1021 catccgtgcg gatgagtcct acaaccgttt tgtcgccatc gccagtttaa ataaacaacg
     1081 ttttgccgac gataaaccat ggactacggc cgcaccaggc ggtcatagct ggtacattta
     1141 ccccatttac gactggaaag tggctgatat ctggacctgg tatgcaaatc atcaaagtct
     1201 ctgcaaccca ctgtataacc taatgtatca ggcaggcgtt cctctgcgtc atatgcgaat
     1261 ttgcgaacct tttggcccgg agcaacgaca aggattatgg ctctatcacg ttatcgaacc
     1321 ggatcgctgg gctgctatgt gcgcacgagt cagcggggta aaaagtggcg gcatttacgc
     1381 cggacatgac aatcatttct atgggcatcg gaaaatcctc aagccagaac atttagactg
     1441 gcaagaatat gcattattgc tgctcaatag catgccggaa gatgatcgca tcaaagcgat
     1501 taatgaaatc cgcatggcga tccatcaggt tagccccttt cgtgaagagc cagtggattg
     1561 cgttctgtgg gttaaaaaca gccaacttat gcctaatgat tacaacccaa acaacgtggc
     1621 accacccgaa aaaaaactgc tgcaaaaatc cattgaaata gatggtttta cccaacccat
     1681 tgtggtcaca catacggata aaaatgccat ggaaatcgtg gatggttttc accgccatga
     1741 aattggtaaa ggctcatcat cattaaaatt acgcttaaaa ggttatttgc cggtgacctg
     1801 tctggaaggt acgcgtaatc aacgcatcgc cgcgactatt cgtcataatc gcgctcgtgg
     1861 acgccatcaa atcaccgcca tgtcggaaat cgtccgtgaa cttagccagt tgggatggga
     1921 cgataataaa attggcaaag agctgggaat ggacagcgac gaagtgctgc gcctgaagca
     1981 aattaacggc ctgcaagagt tgtttgccga ccgtcaatat tcccgcgcct ggacggttaa
     2041 atagctaaag ctggcgcagg cgttcagctg ctgccagcaa cgtcgattcc ttcttggcaa
     2101 aacagagacg aatcagttta tgtgggaagg gatcggcgca aaacaccgac agcggaatcg
     2161 ccgccacgcc gtgctcccgc gtcagccact ggcaaaactc aacatcatcc agggtagaaa
     2221 cctcgctgta atccaccagc aaaaagtatg taccttcaca cggtaaaatc tccagccggc
     2281 tttcatttaa agcattcacc agaatatcgc gcttctggcg ataaaagtcc ggtaacgcaa
     2341 gataatgctc aggttctgca cgtagcatat cagcaagcgc cagctgtgcc ggggtattca
     2401 ccgaaaaggt cagatactga tgtaccttgc gaatttcggc gctgatgggc gctggcgcaa
     2461 cacaataacc cactttccag ccggtcatat gatagatctt gccaaatgaa gaaaccgcca
     2521 ctgcccgctc acgcagctgc ggatgcgcca gcacactggc atggccctgt tgtgaaaagt
     2581 tgatgtgctc gtagacttca tcgctaatga caaaaatctc gtgcccggcg atcgcctgcc
     2641 acaaagcggc gaaatcagcc tgctgccaga cagttgcact ggggttatgc ggagtgttga
     2701 ggatcaccag tctggtgcgc tcgcttaata atgcggcaaa ttcctgccag tcaaggtggt
     2761 tgcagtgcca tacgcttcac tattccccca gaaagcgcga tggcgggggc gtaactgtca
     2821 tagctgggat caaaacaaat cacttcatcg ccattgcgca ccagtgcggt aatcgccgcg
     2881 tataacgctt ccgtcgcccc tgccgttacg gtgatatcgc tatcggcatc tggttgatag
     2941 ccatacaaac gttccgtttt ctgagcaatc gcctcgcgca aggcctgcac gccggtcatg
     3001 ggcgcgtatt ggtttgcccc ctgggcaacg tggtacgcca gccgctcctg taaatagcgc
     3061 ggaccatcaa aatcaggaaa gccttgcgac aggttaatcg cctggtgttg ctgcgccagc
     3121 gcgctcatct gggtgaaaat agtggtgcca agttgtggaa gtttgctttg tggaatcaga
     3181 gggttatttg tcatttttat tgtacctgac gaagttgcgt gttgaaggca ctataacacg
     3241 atgctagtat ttggcaatca agacgtttag atgtctaaat aaaacaataa ggacaacaca
     3301 acatgcctca caatcctatc cgcgtggtcg tcggcccggc taactacttt tcacatccaa
     3361 gaagtttcaa tcacctgaac gattttttca ctgatgaaca actttctcgc gcggtgtgga
     3421 tctacggcaa acgcgccatt gctgcggcgc aaaccaaact tccgccagcg tttggacttc
     3481 caggggcaaa gcatattttg tttcgtggtc attgcagcga aagcgatgta cagcaactgg
     3541 cggctgagtc cggtgacgat cgcagcgtgg tgattggcgt cggcggcggc gcactgctcg
     3601 acaccgcgaa agccctcgcc cgccgtctcg gtctgccatt tgttgccgtt ccgacgatcg
     3661 ccgctacctg cgccgcctgg acaccgctct ccgtctggta taacgatgcc ggacaggcgc
     3721 tgcattatga gattttcgac gacgccaatt ttatggtgct ggtggaaccg gagattatcc
     3781 tcaatgcacc gcaacaatat ctgctggcgg ggatcggtga cacgctggcg aaatggtatg
     3841 aagcggtggt gctggctccg caaccagaaa cgttgccgct aaccgtgcgg ctggggatca
     3901 ataatgcgca ggccattcgc gacgtcttgt taaacagtag cgaacaggca cttgccgatc
     3961 agcaaaatca gcagttaacg caatcatttt gcgatgtggt ggatgctatt attgctggtg
     4021 gtgggatggt cggtggtctg ggcgatcgtt ttacgcgtgt ggcggcggct catgccgtgc
     4081 ataacggtct gactgtcctg ccgcaaaccg agaagtttct tcacggcacc aaagtcgctt
     4141 acggaattct ggtgcaaagc gccttgctgg gtcaggatga tgtgctggcg caattaaccg
     4201 gggcgtatca gcgttttcat ctgccgacta cgctggcgga gctggaagtg gatatcaata
     4261 atcaggcgga gatcgacaaa gtgattgccc acaccttgcg cccggtggag tccattcatt
     4321 acctgccagt cacgctgaca ccagatacgt tgcgtgcagc gttcgaaaaa gtggaatcgt
     4381 ttaaagcctg acgtgcaaat ttagcagcag cgcgcgccgc cttttccacc gtagcgcgcg
     4441 tcctgccgct cacggaaaaa ctcctcgtag gtcatcggcg tttgatcggg atggttaacc
     4501 cgcatatgtt cgacatagtt gtcgtaatca ggcataccaa tcatcagctt cgccgcctga
     4561 cctaaatatt ttccggcttt tgccagtgaa tcaaacatct tggcctccgc taaccatgtt
     4621 gctgaaagag tgccggatgc ggcgtgaacg ctttatccgg cctacaaatg ctatcaacgc
     4681 actcggtcag tcccctcgcc ccatcgggga gagggttagg gtgaggggga accctcggca
     4741 ctatgccaac attcgccaac atcccccctc actctgactt tagtgcgcgc ctttcgcctg
     4801 cgctacgatc tcctcgacat tttccggcat cggctcatac ggcgtttctt tcgccgttgg
     4861 cttcggatct ttcaatgccg caagtgccgt cttaatcgag aacagtgcca gaaccaccac
     4921 gaccaccata aagaagatgg ttaacccggc atccagacgg ttgttgaaca ccagttgcgc
     4981 cagctgtgac tcagtatact gcgacggaat attgccgctg tcgatcattg cctggaactt
     5041 gttagcaatg gccaggaagc cgactttcgc atccgggcta aacgctttct gccagccagc
     5101 ggtcagggta caaatcagca gccaggccgt tggtaccagc gccacccagg cgtaacgttg
     5161 acgtttcatc ttgaacaaca ccacggcaca gagcatcagc gccatccctg ccagcatctg
     5221 gttggcaata ccaaacagcg gccacagagt gttaataccg cccagcggat cgaccacgcc
     5281 ctgatggagg aagtagcccc acgccagtac gcacagcgcc gttgccagca ggttagcagg
     5341 cagtgaatcg gtccgcttca ggccaggaga caccacgccc agcagatcct gcaacataaa
     5401 gcgcgcagca cgcgtacccg catctaccgc cgtcagaata aacagagctt caaacagaat
     5461 ggcgaagtga taccagaacg ccacatccat cataccaccc agcgcaccgt gcaggatgta
     5521 agccatcccc accgccaacg tcggcgcacc gcccgcacgg gaaatgatcg actgttcacc
     5581 cacttcgctg gcaatctggt tgagcgtatc tggtgtaatg ctaaagcccc agctactcac
     5641 cacctgcgcg gcagaagcga ccacatccgc cgtccctgct ggagccagca ccgccattgg
     5701 gctgttcatg gcaaagtaaa cgcccggatc gatgatacag gcggaaacca gcgccataat
     5761 cgccacgaag gattccatta acattccacc gtagccgata aaacaagcct gcccttcgtt
     5821 cgccagcatc ttcggcgtgg tgccggaaga gatcagcgca tggaagccag acaccgcgcc
     5881 acaggcgatg gtgataaaca ggaacgggaa caggttaccg gtccataccg ggccagtgcc
     5941 atcgacaaat ttggtcagcg caggcatggt cagcgtcggg cgcataatca aaatgcctac
     6001 cgccagaccg acgatcgtcc cgattttcag gaaggtagag aggtagtcac gcggggccag
     6061 cagcaaccac accggcagca ccgccgccac aaaaccgtaa cccaccagca tccaggtcag
     6121 ctgcacgccg gtaaagtcaa agtacggtgc ccaggtcgga ctttctgcca cccagccgcc
     6181 agagataatg gcgaaaatca ggaataccag accgatgacc gacacttcac caatacgccc
     6241 cggacgcaga tagcgcaggt agatccccat aaacagcgcc agcggaatgg tgaacgcaac
     6301 ggtatacgtt ccccacgggc tatgagtcag ggctttcacc acgatcatcg ccagtactgc
     6361 aaggataatg accatgatca taaagcaggc caccagcgct atcaccccgg cggttggccc
     6421 catctcttct ttgaccagct cacccagcga tcgaccgtca cggcgcgtag aaacaaacag
     6481 caccatgaaa tcctgcaccg caccggcgag aaccaccccg gcgagtagcc agatcatccc
     6541 cggcaggtag cccatttgcg ctgccagcac cggcccaacc aacggacctg ctccggcgat
     6601 ggccgcaaaa tggtgaccga acagcacttt cttgtccgtc ggcacatagt ccagcccgtc
     6661 gttatggcgc accgctggcg tcatacgctt cgggtcaacc gccagcacat ttttggcgat
     6721 atacaaccca taaaaacggt aagcgatcag atagatacag accgacgcca ccacaatcca
     6781 cagcgcgttg atctgttccc cacgatttaa agcaatgtat cccagagcaa atgctcccat
     6841 tacagagagc actgtccaga cgaggtattt ccctgatttg ttcatagttg ttatccgtgt
     6901 gcgtgtccat agagatgtta cattttgttt ctataacatc tttgtacgat ttaacaacac
     6961 ggtaactatg taaatcggag ttgaaaccaa tatttaactt aacaatgtta actcgatcac
     7021 tccgttaacc gagttttcct gcaatctcat ttaattctgt cgggctcatc ccaaaactgc
     7081 cgtacccagc cgacaagtgc agcaacgccg cccctgttca tcgaaaacga cgatttccca
     7141 gctctgattt tgccgcccaa gatgcagcgg ctggcagacg ccgcgtacct tgccttcaga
     7201 caccgggcga tgatgggtgg cgttaagttc cgtgcccacc acacactgcc cgtcacgggt
     7261 catcataaat ccggccatcg atcccagcgt ttcagccagc gccgccgacg cgccgccatg
     7321 cagcaggcca aacggctgat gagtacgggt atcaaccggc atttcggctt ccagcacatc
     7381 atctcccaga cgggtataca caattcccag atgcgccacc attgtgttat cgctggtggc
     7441 gttcagttcg tcgagcgtta aatggcgttt ccagatcatg cttatgcccc cagcgttgag
     7501 ccgccatcga ccacaatatc ctgtagggtg atatggctgg cgaggtcaga ggcgaggaac
     7561 aaaatcgtgt tggcgatctc ttgtggacgg gcgattttcc ccagcggaat gccgagttta
     7621 aactgctcgc caaagccgcg aatacgctgt tcttcggcgt catcgctcac ccacagcgtg
     7681 cgttgcatat cggtgtcggt ggagccaggc gaaaccacat tacagcgcac gccgctaccc
     7741 gccagttcca gcccgacgct caacgccagg cttttcagcg ccgctttcga tgcgccataa
     7801 gcactcatac caatacgcgg cgtgtgtgcg gcgtcggacg ccacagtgac aatcgccccg
     7861 ccccgctgac ggcgaaactg gttcatggtt tgctggaaca ggttaaacgc accgccgacg
     7921 ttaaccgcaa aagtctgctg ccagtcctct ttactgagct gatcggtcgc gcccatgcgc
     7981 aaaattcccg ccgcattgat cagcacgtcc agtcgctccg tttcagctaa cagtcgctga
     8041 catacctgcg ccacctgccc ggcgtcggca acatccatta cttcggtcgc aaagggatat
     8101 tgctcctgag tgaacgcttg atcaaaacct gtaactttcg ctcccgcctc aacaaacgcc
     8161 agcgccgtgg cgtagccgat acctttacct gcgccggtta cccagacatt tttaccgctg
     8221 aaatccatta tttaacctcg cgggagagta gcttccacca ggcgtcgatg gtcgggtttt
     8281 tcgccagcat gacaaagtcg atatcaccat gcactttgcg ccagcgcgcc gccagcgcca
     8341 tcatgcgcac cgaatccaga ccgtagtcga tcaggttgtc gtcatcgaac ggttcatcgg
     8401 actcgtccag caacggcagg ataacctcac gcagcgccgc tttgctggcg gggacaggtg
     8461 ctggcagtaa ttcttcagtc atcaccaccc ggccagaccg cccggccaca tatttcagcg
     8521 acatcaaatg ctcgtcacgg ctgaaatcgg ccagcgcatc cgccaccata aacggtttaa
     8581 tatcgcgcat aaatgcgtcg gttgcggtgg tcatacagcc aatgtgggca tataccccgg
     8641 taataatcag ctggttacgt ccactctctt tgagcatttg ctccagcgga gaacgatgaa
     8701 acgcgctgta gcgccacttc accagcaccg tgtcgtcggc atctggcgtc aggcgatcca
     8761 ccaccttttg ctgttccggc gaacgggtca ggcccggccc ccacatatca ttcaacagcg
     8821 cccgatcttc atcgctctgc tctttcggct gggcggtgta ataaactggg atattgtgct
     8881 gtttgcagta gtcgcgcagc gcagcaatat tcgcgatcac ctgctccatc atcgggcagt
     8941 tctcgcccca gaagctgaca aaatagtcct gcatatcatg gattaacaac gcggcacgtt
     9001 gcagttcaaa ggcccagtca actttattct gcggaatatc gtgagactcc ggcagtgcgt
     9061 aagcctgtaa ttttggaata gccatcgtgt tctctccttc aggctgatgc gcgtgacgcc
     9121 agccactgac ttaattgttt tttatcgact ttcccgaccg ccgtcagcgg aagtgaatct
     9181 acacactcca cgcgatccgg taatttaaat tcggcaatac cctgttcacg caggaaacga
     9241 cgcacctgca ccgcgcgcag cggctctttt accaccagat aagcacagct tttttcgccc
     9301 atcagctcat cttccatgct caccagtgcg gcatagatca ccgccggatg gcgcagcagc
     9361 aggttttcga tctcttcggc agcgatcttc tcgccgccac ggttgatctg atctttctcg
     9421 cgcccctgca cggtgatgta accctctgga tcaatagaga tcagatcgcc ggaacagtaa
     9481 aaaccgttgg catcaaaggc gctggcattg tgctgcggac ttttgtaata accgcggaag
     9541 gtgtacggcc cgcgcgtcat caggcgtccg acttcccctt gcggcagtgg atttccttcg
     9601 gcatcggcaa cccacacttc atcgtccgga cacattgggt aaccctgggt atggataatt
     9661 ttctccgcgc tatcatcaag acgggtgtag ttcaccagcc cttccgccat gccaaacacc
     9721 tgctgcaact ggcagccaat ctcagcggga atacgcgccg caagggtggc agaaagacgt
     9781 gcgccgccga cctgtaacag tttcagcgag gcaagctgcg cccggctttc gccttcagcc
     9841 agcgcctgca accacaggct gactgccggc ggcaccagcg cggtgacgtt cacctgatgt
     9901 ttttcaatca atgggaagca aagcgtagcg ctgggatcgg ccgccagaac aaccgttcct
     9961 ccggcaagaa agacgcccag cgatcctggc gaactcatgg cgtagttatg agccgccggg
    10021 atcgcgcaca ggtagcgcgt ctgttgtgtg aactgacaaa tctcgacgct acgacgcacg
    10081 ctgtagtagt agtcgttatg agtgcgcggg atcagcttcg gtgtaccggt ggtgccgccg
    10141 gaaagctgga aataggccac ttcatcagca ggtgatggcg tggcagtaaa accgtctgcc
    10201 ggatggttaa tcgcatcctg caagttatgc tcaccgctgt cgttgtgcag ttgcaccacg
    10261 cgaatggagg aatgttctgt gacgaaagta ttgaggaaat catccccgct aaacagcgca
    10321 tgttggcgat cggcaatcag caatgcgggt tcaatctggc tggcataggc gttcagttca
    10381 ctacgctgat ggctgaacaa cgccagcacc ggcgcaacgc ccagtttcag cagcgcgaaa
    10441 aaggtaatat acaattcagc gacgttaccc agttgtacca gcgcggtttc accaggttta
    10501 atgccctgac ggcgtaaagt acacgcgagg ttatccgccg cctgattcag ctcccggtaa
    10561 ctcaactgta gctcgccgtc gataaccgcg atgctgtcac tcgcagcgtg gcgagtcaga
    10621 atgtcggtca gcggcaaatc ctgccagtag cctttttccc gatagcgacg ggcaaactct
    10681 tccggccagc gggtgaatgg aatgctcatc ctcgctcctt aatgcaatcc aaaaacattc
    10741 aacatggtag aaagtttgac gcctgtttcg cgccactcac ccaacggtga cgacgcaagc
    10801 acaatccccg ctccggcaaa cagacgcacc tgattttccc gcagcttcgc gcagcggatg
    10861 gtcaccaccc attcgccgtt accttcgctg tcacaccaac ccacaatgcc gccaaacagt
    10921 tcgcggtcga acggctccag ttcagcaata acctgagtcg cggcctgatg cgggaaaccg
    10981 ctcagcgcgg gggtcggatg cagcagacag gccagagtca gtgcgttttc ttgcgaattc
    11041 gctttacctt caaagggagt tgcgagatgc cacagcgtcg gcgtggtaat caattgtgga
    11101 gaggagggaa cgtgtaactc actactgcgt tcgcgcagta cctctttcat cgcctgagtc
    11161 accagttcat gttcatggcg atctttttct gacgccagca gacgattacc cgcttcgcga
    11221 tcgagcactt catccggctg acgacgcgcg gaaccggcta acggaatgga gctaaaacgc
    11281 tcgccgtctt tacgtagcag cagttccggg ctggccccca gcaggacgcc accatcagcc
    11341 agcgggacat ggaagttgta actaaccggg ttttgcgcaa tcaaccgttc cagcaatacg
    11401 ccactatcaa tggcggcgtc agtggtgata tcaatcaacc gtgacaacac cactttgtca
    11461 acctgcggcg tggcggtaag tgcggcagcg cgggcaacca tctgttcaaa cgtggtttgt
    11521 tccggaattg cctggcgttc caccacattc agcgactggc tgcgggtgaa acggcgggcg
    11581 gaagcttgtt tttcctgacg ggagaacgac tgccaggatt caggaatata cagcgacgaa
    11641 ggctgacgtg gatcgaaggg aatcgccccg accatcaccg gatttttgat gccctgcact
    11701 ttggcatcgg caaacagcgc ggcgagtttt tgctggaagg gactgtcggg cgaatccccg
    11761 ttcacagccg gttcatcgaa gcgggcgaaa catcctgacg tcgtaaaact gcggtacggc
    11821 gacataaaga aaaagcgatt gggcgcaagt gttgccatgg tctgctgtac ttcctcagcc
    11881 agtgacgtat ccatatcatc ctccacaaaa tgataaaggc tttaataatg attatcattt
    11941 atattttcgg tcgctaacct aaaagcaaac gcgcactatg tcaactcttg aggtaacgca
    12001 atctgcaact cggggttgca tctggttgtg gttacaatga aaatgagaag cattattgat
    12061 ggattcgcat aagcgcaatg tgatgtcctg cgccgttctt ccccctctcc cttccaggga
    12121 gagggctggg gtgagggtca atattcgcac cagtgctggc tgctcccatc accctaaccc
    12181 tctccccaaa ggggcgaggg tacggatagt gcgctttgtc gaatttgtca ttacgccctt
    12241 aaccttatta ataacaggaa gctgatttgt gagactcgcc ccgctctacc gcaacgccct
    12301 tctattaaca ggacttttgc tttccggaat agccgcagtt caggccgccg actggccgcg
    12361 tcagattact gacagccggg gcactcatac cctggaaagc cagccgcagc gtattgtttc
    12421 caccagcgtc accctgaccg gctcactgct ggcgattgat gctccggtga ttgccagcgg
    12481 cgcgaccacg ccaaataacc gcgtcgcgga tgaccagggc tttttacgcc agtggagcaa
    12541 ggtggcgaaa gaacgcaaac tacaacggct ctatatcggc gaaccgagcg ccgaagccgt
    12601 tgccgcgcaa atgccggatc tgattttaat tagcgcaacc ggcggggatt cggcgctggc
    12661 gctgtatgat cagctttcca ccatcgcccc gacattaatc atcaattacg acgacaaaag
    12721 ctggcagtcg ctgttaacgc agcttggcga aattaccggg catgagaaac aagcggcaga
    12781 gcggattgca cagtttgata agcaactggc agcggcgaaa gagcaaatca aattaccgcc
    12841 gcagccggtc actgctattg tctataccgc cgctgcacac agtgccaatc tctggacgcc
    12901 ggaatcagca caagggcaga tgctggaaca actcggcttt acgctggcga aattgcccac
    12961 agggttaaac gccagccaaa gccagggcaa acgccatgac atcattcagc ttagtggaga
    13021 aaatctggct gcagggttaa atggcgagtc actattcctg ttcgccggtg atcagaaaga
    13081 cgccgatgcg atttatgcca atccactgct cgcgcacctg cccgcagtac aaaacaagca
    13141 ggtttatgcg ctgggaaccg agacgttccg cctggattac tacagcgcca tgcaagtgct
    13201 ggaacgactt aaggcgctgt tttaagcatt aactgtcgga cgctgtcacc tgcggcggcg
    13261 tctggcgaaa acgtcgcaac tccaccagca ccagcaataa caacacgccg ataatcaaca
    13321 aaccaaaacc gctcgcgctt gcggaagcaa ccggtgtcat catcgctccc agaccgccta
    13381 acagcgccgc gcctatggca tcgcccgtca cgttttgtgc cgtccacaaa ccgttgattc
    13441 gccctaacat tgcttccggc gtttgcgttt gcagcattgt atattgcagc aacgaactga
    13501 ccgcactcag ccagccgaac agcgccagac aaaccacgcc taaaatccac atcggcatca
    13561 ggccaaataa accaatggcg aggaacgatc ccaacgtgga gagcaacatc aacaatcctg
    13621 gtcgcgcgct atgcgccagt ttcccactgg ttaatgcgcc aatagccgca ccgagcggga
    13681 tcgccgcata gagaaaacca atctctgccg ccgacatctg ccagttgtca gccagcgccg
    13741 gatacagtac ccgcaccgcg ctcgccatcg tcaataaacc acccagcaac gcaatcccgc
    13801 ccaccagcgg gctggcgagc agaaaacgaa atcctgccag taatgatttc aacggatgct
    13861 cgcgcggctg cggtggcggt ggcaacgccg gaaggcttaa caacggtagc aaggtaataa
    13921 acgtgcccgc cgccgccagc ccgtagttcc aggctacgcc accggtcgcc agcaataaac
    13981 cgccaatcat gggcgaaatc accgacccca gacgcacggt caacatggtg atcgccccgg
    14041 cctgcattaa gttttcacgc cctaccagtg ctggtgtcgc cgccaatagc gccgtaacgc
    14101 caagcgatgc gaaaaaacca tcccataaac caagtaaata gattgccagc aatgacggct
    14161 ccggcagcag tgcattaagg cacagtccaa tgaagccaat gccacaggtg ccgcgcgcca
    14221 gcaaaatcac ttttttgcgc tcatagcgat ccgccagcac accgccaacc atcaggccaa
    14281 caaacatcgc gccgccggtc agcgtcaccg aaagccccac cagccaggta gaatgcgtca
    14341 tcatctggat ctgcaccggc accgcgacgc cgagcaaacc cagagacaca attgagataa
    14401 aacgagcgag gaatactgcg cgaaacgccg ggtgcgtttt caacaggctg aggttaagca
    14461 gccaggattg tttattcatt acaatgcctt gccatcaaat attttaaata cctattctta
    14521 ggctgcacat gctaacatat ccaaataaga tcgataacga taattaattt cattatcatg
    14581 gaagttcgta tgtctggttc tgttgccgtg acacgcgcca ttgccgtgcc cggattgctg
    14641 ttattactga ttatcgcgac ggcattaagc ctgctcattg gggcaaaatc actccccgct
    14701 tccgtagtgc tggaggcctt ctccggcacc tgccagagcg ccgactgcac catcgtgctc
    14761 gacgcgcgac tgccgcgcac ccttgccggt ttactggcag gcggcgcgct tggccttgcc
    14821 ggggcgttga tgcaaaccct cacccgaaat ccacttgccg accccggctt gcttggcgtg
    14881 aacgccggag ccagctttgc cattgtgctg ggtgcggcgc tgtttggtta ctcatccgcg
    14941 caggaacaac tggcgatggc cttcgccggg gcgctggtgg cctcattgat tgttgccttt
    15001 accggcagtc agggcggcgg gcagttaagt ccggtgcgtt taaccctggc gggcgtggcg
    15061 ctggcggcag tgctggaagg gctgaccagc ggcatcgccc tgcttaatcc tgacgtctac
    15121 gatcaactgc gtttctggca agccggttcg ctggatattc gcaatctaca taccttaaaa
    15181 gtggtgctga tcccggtgct gatcgccgga gcaaccgcgc tattactgag ccgcgcgctg
    15241 aacagtttaa gcctcggcag cgacaccgcg acggcgctgg gcagtcgcgt ggcgcgcaca
    15301 cagttaattg gtctgctggc gattaccgtg ctttgtggta gtgcgacagc ggtagttggc
    15361 ccgattgcct ttattggcct gatgatgccg catatggcgc gttggctggt gggtgccgat
    15421 catcgctggt cgctgcccgt aacgctgctt gctacccctg ccctgctgct gtttgccgat
    15481 atcatcgggc gggtgattgt gcccggtgaa ctgcgcgttt ctgtggtcag tgcctttatt
    15541 ggtgcaccgg tgctgatctt cctcgtgcga cgtaaaacgc gaggtggtgc atgatttacg
    15601 tctctcgccg attactcatc acctgtttgc tgcttatttc cgcctgtgtg gttgcaggta
    15661 tctggggatt acgcagcggt gccgtcacgc tggaaacctc gcaggtattc gccgcgctga
    15721 tgggcgatgc gccgcgcagt atgacgatgg tggtcaccga atggcgttta ccacgcgtgc
    15781 tgatggcgct gttgattggc gcggcactgg gcgtcagcgg tgcgattttt cagtcgctga
    15841 tgcgtaaccc gctcggcagc cctgacgtaa tgggctttaa caccggggcg tggagcggcg
    15901 tgctggtggc gatggtgctg tttggtcagg acctgacggc tatcgcgctg gcagcaatgg
    15961 tgggcggcat tgtcacttct ctgttggtct ggctgctcgc ctggcgtaac ggtatcgaca
    16021 cctttcggtt gattattatc ggcatcggcg ttcgcgccat gctggtggcc tttaatactt
    16081 ggctgttgct gaaagcgtct ttagaaacgg cgctaacagc gggtttgtgg aatgccggat
    16141 cgctcaatgg cctgacgtgg gcaaaaactt cgccttccgc acccatcatt atattgatgc
    16201 tcattgccgc cgccttgctg gtgcggcgaa tgcgcttgct ggagatgggc gatgataccg
    16261 cctgcgcgct gggcgtcagc gtcgagcgtt cgcgtctgtt aatgatgctg gttgcagtgg
    16321 tgcttaccgc tgcggcaacg gcgcttgccg ggccgatttc ctttattgct ttagtcgcgc
    16381 cgcacattgc ccgacgcatt agcggcaccg ctcgctgggg gctgacccag gcggcgctgt
    16441 gcggagcgct gttactgctg gcggccgatc tctgcgccca acaactgttt atgccgtatc
    16501 aacttccggt tggcgtcgtt accgtcagcc tcggcggtat ttaccttatc gtcttgttaa
    16561 ttcaggagtc tcgcaaaaaa tgaccgaatc agtagcccgt ttgcgcggcg aacagttaac
    16621 cctgggatat ggcaaatata ccgttgcgga aaatctgact gtagaaattc ctgatggtca
    16681 cttcacggca attatcggac caaatggctg tggtaaatcc acgttactgc gtaccttaag
    16741 ccgcctgatg acgcctgctc acgggcatgt ctggctggat ggcgagcaca ttaaacatta
    16801 cgccagtaaa gaagttgcac gccggattgg tctgttggcg caaaatgcta ccacgccggg
    16861 cgatatcacc gtgcaggagc tggtggcgcg tggacgttat ccgcatcaac cgctgtttac
    16921 ccactggcgc aaagaggatg aagaagcggt aacgaaagcg atgcaggcca cgggaataac
    16981 tcatctggca gatcaaagcg tggataccct ttctggcgga caacgccagc gagcgtggat
    17041 cgcgatggtg ctggcccagg aaacggcaat tatgctgctc gacgaaccca cgacctggct
    17101 ggatatcagt catcagattg atctactgga actgttaagc gaactgaacc gcgagaaagg
    17161 ctataccctg gcggcggtgc tgcacgatct taatcaggcc tgtcgttacg ccagccattt
    17221 gattgcattg cgggaaggga aaattgttgc tcagggagcg ccgaaggaga ttgtcactgc
    17281 tgaactgatt gagcgcattt atggtctgcg atgcatgatc attgacgatc cggtagccgg
    17341 aacgccgctt gtggtgccgc tcgaacgaac ggcaccttca accgcaaata gttaaactaa
    17401 gtggtctgcc atcatggcat cctgttttct ggatgccatc gcatagcgca ataacacgct
    17461 accacaagcc accatcccgc cgatcagcgc ggaaaggatc acaataatcg ccttacccgg
    17521 accgtctttt ttcactggca atgacgggct taactgatat ttaaacggcg taaaattcac
    17581 atcgttgaca tttgcttttg ttaattgctc gacaagatac tgccgattac gtaattcacc
    17641 gttcagttcc gcaacgtcag taaccgcttt ttcaatttcc agtttgcgtt caataccgtc
    17701 tgcgccgaga gaaatagaga aatcggggtc atctttaacg gcctgaccat tactgtatac
    17761 gggcttttta attcctgccg cgttggcaat gtcgagtgaa taattgaggc gctgaatgtt
    17821 tgcatcaagt tgatttttcg ttttaatgcg atcctgagcc agtttttctt tttcaaactg
    17881 ggttttgatc tccagtttat tacggacgtt ttctatcgac tctttcacca ccaacgcaga
    17941 gatataatcg atatacccgc tcaaaacggt ctgcgcctct ttactggttg gcgcggtaaa
    18001 acttagcgtc caggaggtat acagtgacgg ttcatctttt ttcttactgg cattgtcatc
    18061 aaccgctttc attttttcgc tcaatgcaac aatagcgcga tgcaaatcca gttcatcgat
    18121 tttcgcctct tttaattggt ccatcacata aggtgatgaa cgcaggtact cttccagcaa
    18181 gctaacagac tgaaacttct tgataaacag gttaaatgca ccgccacggt cgatattaac
    18241 atcgagatca agaacgcgga gtttggtaaa ggttttctcc aggtcctgcc actgaatggc
    18301 ttcggcggga gtaataacgg ctgagctggt ccatttttgc ggcaggatga aagagatcag
    18361 taaacctgcg caggcaaatg caaaaacgac cgccatgacc gtttttttgg cccgccataa
    18421 aacttcgatt agattaagta aatcaatttc attactactg ggcgacgcca gaggatactc
    18481 ggaaaaatga gcgtcacttc cctgtttaat attcagtgat gacatgggta taacctgaaa
    18541 atgagtccaa tagggggaaa tctccacggc gctcacttta ccagttggtg agaattatcc
    18601 gaagctgaag tttgtaaatt ccttccactg aatgcaacat tcactctatt taagagaaat
    18661 attcatcaaa cctataaatc aaacaaataa aaaacccata attattttct gtaattatgg
    18721 gtttatagat aatattaatt tacctgttta gcgttgcgcg aataatcggc ccaattttta
    18781 caaacgcccc tggagagata atatccacat gcgcacaatc ctgacgatag atatccagct
    18841 cggcaatcca gggcgaccaa gcgcgttcgg ggctcatacc ttcctgaagc gtgcgttcag
    18901 caacaaacag cgtcgcttta ccatcaaacg gtacgctatg agcagtcgtc agcagacgca
    18961 cagcatcagc gtagttgcct tcaatggtgg taaacaactc cgttgaagta cttccctgct
    19021 gtgccgccag gaaggcctcg cgttcgcggt taatctccgc cagcacttcc gggtccagac
    19081 cattagcctc tttttcctgc cagttttgcg tttctggcgg ccaggtatcc agcaaaccaa
    19141 gaaatgccac ctgttcgcca cgggcacgca gtcgcgccgc aatgccctgc gccagcgtac
    19201 cgccaaggga ataccccagc aggtaataag ggccgtgcgg ttgttgttca agtaacgttg
    19261 ccagatgcgc ttcacagact tcatccagat ttgccgcggt atgcatgggg ccattggggc
    19321 gcggcgactg aatgccgata atcgaccatt gtggatcgat ataacgcgag agcacgctaa
    19381 actgccaggc aaaaccggat gccggatgga aacaaaacag cgtcgggcca ttaccttcac
    19441 gcaacggcag aatggtttcg aatcccatac gccgggtgct gtcttcttca gcatcaataa
    19501 tcgttgccag tttagcgacg gttgacgcga ccatcacttg ccccggcgtc acctggcggg
    19561 caacctgccg acttaactgc gctgccagtt tcattgccag tagcgaatga ccaccaagcg
    19621 caaagaaatc agcatcggca tcctgcacgt cacaacccag caacgacgcg aatgccgcgg
    19681 caataatcgt ttcactgccc gcttttggcg cacgccccgg cgcttgtgcc ttcagttcag
    19741 gcaacggtaa ggctttgcga tccagcttgc cgttggcgct aagaggtaac agtggaagtt
    19801 gcagcagaac cacgggcacc atatgtggtg gcaatgtttc gcgaagctgc gcctgtaatg
    19861 cgctggtatc caacggcaga cctgattgcg acaccagata gcccaccaac tgacgcgcat
    19921 caccaccggt ggctgccgcc tggttaatca cacaggcgtg ggtaacggct tgttcgacat
    19981 ccggcagcgc ctgcatcacg cgatcgattt cgcccagttc aatacgctgc ccgcgaattt
    20041 ttagctgatc gtcactgcgc ccgaggtact ccaccgcgcc gttatccagc cagcgggcaa
    20101 cgtctccggt acggtacatc cgttcaccag ggacaaaagg atcggcaata aagcggctgg
    20161 cggtcagatc gggtcgtcca agatacccct gcgccagttg aatgccggtg agatagagat
    20221 cacccgccac acccggcggc accggatgca tcatcgcatc aagaatacgc agacccgtat
    20281 tccataccgg ataaccaatc ggcacactgc tgccgcgcac ctgtgccagt tcctcgccaa
    20341 aagccggata ccagctgaca tctaccgccg cttccgtcgg gccatataga ttatgcaacg
    20401 gcacgctggt taactgttgc cattcgcggc ataaatcagc cggtaaggcc tcaccactac
    20461 agaaaacctg tttcaacgtc gcgcaactct ggcgagcggt ttgcggcgtc agcgatgcaa
    20521 caaatgctgc cagcatcgac ggcacaaagt gcgtggtcgt tacgccatat tcggcaaaga
    20581 attgctgcat agcgagcggg tcgcggtgcg cttccggttc agccatcacc agtttagccc
    20641 cggcaataaa cggccagaaa aactcccaca ccgagacatc aaaactgcac ggcgtttttt
    20701 gggcaacgac atcttcgcct gtaagcagat aatgattttg catccacaac aggcggttaa
    20761 cgatagccgt ctgcccgacc attacccctt tcggcctgcc ggtggagcca gaggtaaaga
    20821 tgatataagc cgtgtgatgc ggttgtgaaa gttgcagcgg cgcactgccc tgcggtttaa
    20881 gcggggcgtt atagcaaagg ttggttaaat ctggaacatc ggcaaagcgc ggcagttgat
    20941 cgtcggtggt gattaacagc gacggacgcg catcttccag catcattttc aggcgatcgt
    21001 ccggatagcc ggtatccagc ggtagccagg ccgcgccagc ttcaactatc gcatgtagcg
    21061 ccagggtcaa aaagaccgag cgcggtagcg ccaccgccac gctgtcgccc ggtttaacgc
    21121 cacgctcacg cagcagattc gccagcgcca ccacctgctc gcgcatttcc cgatagctga
    21181 actggtaacg cgcatctgcc agcgccggag catccggtgt ttttgccgct tgttctgcca
    21241 ccagcgcgct cagcgtggtt tctggaatct caacctgagt ggcgttgatc tgcgccagct
    21301 gcgcatactc acctggcagc ataatatcga catcgccgca caacagcgcc ggatccgcgg
    21361 cgaactgggc aatcagcatt ttcaggcgtt cagcatgctg gattaacgtt ggctcatcgt
    21421 aacgctgttt attggcgagg atctcaatac tcaaatcacc gtgttcatcc gggaacaggg
    21481 ccagttcaag gtcattaacc ggaccggttg ccaaggtatg ggtttgcgcc tgaacaccag
    21541 gaatatccag ttggtaatca aataccttga tattgagtac cggaccaaac agcggttcat
    21601 cacctgccgc tcgcccgctg tcacggacaa tttgttcggc atcgtaacgt tgatgacgac
    21661 gcattttttt cagttgtgct gccagtcggg ttgccagttc cggcagcgtt tcttgcgccg
    21721 caatgtgaat acccaacggc aaaacgttga gcacgggtcc ggtagccgtc agcgccgccg
    21781 agcccagtcg acgcataaag ataaatccag cggcgtagtc catgcgattg cacaatcgcc
    21841 ccagccacaa agccgtcagc gcaagggcta aatcggtacg ctgcacacct gaaagttgcg
    21901 tagccaactg gcggaattcc ccgtcggtaa attccatttt cagacgtaaa atatctgccg
    21961 aagcgctgcg ccccggtaaa ggtgccggag aaagtgacgc gggcggcggc agttgacgac
    22021 gctgttctgc ccagaatgcc gcatcacgct gccaggcttc gctttcgcgg tattgctggt
    22081 actcttccac tacatcagcg aaaggcgtaa acggcgaagc aggcgttggt tcaccacgca
    22141 gccatgtgca gtaaatattg gcgatctggc gggtaatggc cgggaaactg aagccatcga
    22201 ccagcaaatg gtgataacgc tgataccagt accagcggtt atccgccacc tgtatcagct
    22261 gatgaaagac cagtggttta ccgctatcga cgcgcagatc ttgttgcaaa tccgcctgca
    22321 ttaatgcctg cgcagtaccg tgcggatcaa tgttggttcg caggtcgata atttctggca
    22381 gttcgaacgt cagcgcatca tcgacccact gccagacttc gccgttatct tccgtaaaac
    22441 gcatccgcag cgtatctgct tgcgctagtc cgtcaaccac cgcgcgggcc agtaatggcg
    22501 catcaacctc tccggttaac tcaacgtaat gcgctacgct ccaggcggag ggtaaatccg
    22561 acagtttttc tgccatccag atgccgggct gtgcggcgac caaaggtaaa tgctggctca
    22621 ttgcgcctcc tgcaactggg tgaaattcgc cggtgtcaga gtacgccagt gggcttcaag
    22681 ccactgctgg caggactctt gtgactgcgg ctgacacaca atgtcccagc ctgccggtaa
    22741 ggcgcattgt tgcggccaca gactgaattg cccctgcgca ttgcgcaaaa tgtaaaacgc
    22801 tccctgtgga tcatcgaagg gattactgaa tgccatattc aactcctgtc atggaaaagt
    22861 ggttgccaga ggtcgattag cccctgcatc aagccaccgc gccaacaaag cgcatcatgt
    22921 ccgccgtcaa cctggcgcca gaaaatggat tcttttatgg ggtgtaattg cgcatacagc
    22981 gcctgattgg cccgcataat catcggctcg cgaatacccg cttccagcac aatgcgcaga
    23041 ccttcggcgc taacttcacc agctttaagc ttttcaagta acacgccctc ttgctgcccg
    23101 ccccgatgcg gccaccagta cgatcctgac tggcttaata cacaaccaaa acgttcaggc
    23161 cagtgcagtc cggcatacag cgcggaaagt ccaccaaaac tctgcccggc aaccacggtg
    23221 cgatcggcgc gatcgctaaa aggggcaata gctttcacca agggtaataa ctcttgctgt
    23281 actgcgagcc agaaatccgc attacacggc agttcgtgag cgcggtgcgt ggtgtcgata
    23341 gcgtcgatca acacatacac ggcgggagga agttgctgac gatgggtcag cgaagtcagc
    23401 actggccaga cgggcatact ttgcgcccaa aattcgccat cgagcaaaac tgccagcggg
    23461 cgttcttctg ctgttgcatc gccggtggta aaaatccata cacgacgtga atttttcaac
    23521 cgttcacttt tccagataat ttctttggct ggtatttctg gcgcttgcgg acaatcccat
    23581 cccggttgca gaggcgcttg cggcatttcg agtgcagaaa cagcgtgccc tcgcccgcct
    23641 ttccagcttt gtggattcag cggatcggct attgcctggg gtaatagttt tcgccagcct
    23701 tcacgtaatt cgaggcgatc gggggatggt gcagaaaaaa tgtcatcgcg ttcggtggga
    23761 ataaagcagt agctgccgcg ccagttggca ttgagttgtg tcgtccactg ccagacatca
    23821 gtacctgcaa tgcgctgcat cgactggggc tggctgttct gatgatgatc ggtcacacca
    23881 gtgatgtaga cccatacgcg ctttatcggc gagtattctt cagaaccttg gggatcacgc
    23941 caccagaaag tgacctcaaa catttcgtca ttcagacgct gccattccgg gccatgtttc
    24001 gactgccacc agctctcact tcctactttt aacgccgtca caccataacc ccatgtttac
    24061 tgtgcaattt ttcattgatt gcagaaatat attgataata ttattgataa ctatttgcat
    24121 ttgcaatagc gtaatggcgc gccgtgggaa gcgcggacat taattaacca actgcactgc
    24181 gtgtctttca ggatcaaagg ttttcgcggt agcgggatgc gtcgtgttga ggacgaccat
    24241 gcccgacagt tgcaattcgt ggcaaaaatg caggaataaa acaatgaaca agaagattca
    24301 ttccctggcc ttgttggtca atctggggat ttatggggta gcgcaggcac aagagccgac
    24361 cgatactcct gtttcacatg acgataccat tgtcgttacc gccgccgagc agaacttgca
    24421 ggcacctggc gtttcgacca tcaccgcaga tgaaatccgc aaaaacccgg ttgcccgcga
    24481 tgtgtcggag atcatccgta ccatgccagg cgttaacctg accggtaact ccaccagtgg
    24541 tcagcgtggg aataaccgac agattgatat tcgcggtatg ggtccggaaa acacgctgat
    24601 tttaattgac ggcaaaccgg tcagcagccg taactcggtg cgtcagggct ggcgtggcga
    24661 gcgcgatacc cgtggtgata cttcctgggt gccgcctgaa atgattgaac gtattgaagt
    24721 tctgcgtggt ccggctgcag cgcgttatgg caacggcgcg gcgggtggcg tagttaacat
    24781 cattaccaaa aaaggcagcg gtgagtggca cggttcctgg gacgcttatt tcaatgcgcc
    24841 agaacataaa gaggaaggtg ccactaaacg caccaacttc agtctgaccg gcccgctggg
    24901 cgacgaattc agcttccgct tgtatggcaa cctcgacaaa acccaggctg acgcgtggga
    24961 tatcaaccag ggccatcagt ccgcgcgtgc cggaacgtat gccacgacgt taccagccgg
    25021 gcgcgaaggg gtgatcaaca aagatattaa tggcgtggtg cgctgggact tcgcgcctct
    25081 gcaatcactc gaactggaag cgggttacag ccgccagggt aacctgtatg cgggcgatac
    25141 ccagaacacc aactctgacg cttacactcg ctcgaaatat ggcgatgaaa ccaaccgcct
    25201 gtatcgccag aactactcgc tgacctggaa cggtggctgg gataacggag tgaccaccag
    25261 caactgggtg cagtatgaac acacccgtaa ctcgcgtatt ccggaaggtc tggcgggcgg
    25321 taccgaaggg aaatttaacg aaaaagcgac acaggatttc gtcgatatcg atcttgatga
    25381 cgtgatgctg cacagcgaag ttaacctgcc gattgatttc ctcgttaacc aaacgctgac
    25441 gctgggtacg gagtggaatc agcaacggat gaaggacttg agttccaata cccaggcgct
    25501 gaccggggcg aacaccggcg gcgctattga tggtgtgagt gccaccgacc gtagcccgta
    25561 ttcaaaagca gaaattttct cgctatttgc cgaaaacaac atggagctga ctgacagcac
    25621 catcgtaacg ccggggctgc gtttcgatca tcacagtatt gtcggcaata actggagccc
    25681 ggcgctgaac atatcgcaag gtttaggcga tgacttcacg ctgaaaatgg gcattgcccg
    25741 cgcctataaa gcgccgagcc tgtaccagac taacccgaac tacattctct acagtaaagg
    25801 tcagggctgc tatgccagcg cgggcggctg ctatctgcaa ggtaacgatg acctgaaagc
    25861 agaaaccagc atcaacaaag agattggtct ggagttcaaa cgcgacggct ggctggcggg
    25921 cgtcacctgg ttccgtaacg attatcgcaa taagattgaa gcgggctatg tggctgtagg
    25981 gcaaaacgca gtcggcaccg atctctatca gtgggataac gtgccgaaag cagtggttga
    26041 aggtctggaa ggatcgttaa acgtaccagt tagcgaaacg gtgatgtgga ccaataacat
    26101 cacttatatg ctgaagagtg aaaacaaaac cacgggcgac cgtttgtcga tcatcccgga
    26161 gtacacgttg aactcaacgc tgagctggca ggcgcgggaa gatttgtcga tgcaaacgac
    26221 cttcacctgg tacggtaagc agcagccgaa aaaatacaac tacaaaggtc agccagcggt
    26281 tggcccggaa accaaagaaa tcagtcctta cagcattgtg ggtctgagcg cgaccaggga
    26341 tgtgacgaag aatgtcagtc tgaccggcgg cgtggacaac ctgttcgaca aacgtttgtg
    26401 gcgtgcgggt aatgcccaga ccacgggcga tctggcaggg gccaactata tcgcgggtgc
    26461 cggggcgtat acctataacg agccgggacg tacgtggtac atgagcgtaa acactcactt
    26521 ctgatgctaa cgtcagattg ttgataaagt gcgcgtcgtt catgccggat gcggcgtgaa
    26581 cgccttatcc ggcctacaaa aatcttgcca attcaatata ttgcaggacc atgtaggcct
    26641 gataagcgta gcgcatcagg cagtttagcg tttgtcacca gtctctaata tggtcgacat
    26701 gaaaactacg catacctccc tcccctttgc cggacatacg ctgcattttg ttgagttcga
    26761 tccggcgaat ttttgtgagc aggatttact ctggctgccg cattacgcgc aactacaaca
    26821 cgctggacgg aagcgcaaag ccgaacattt agccgggcgg atcgctgcaa tttatgcgct
    26881 gcgggaatat ggctataaat gtgtgcccgc aatcggcgag ctacgccaac cggtgtggcc
    26941 tgcggaggta tacggcagta ttagccactg cggggctacg gcattggccg tggtttcccg
    27001 tcaaccgatt ggcgttgata tcgaagaaat tttttctgcg caaacagcga ccgaattgac
    27061 agacaacatt attacaccag cagaacacga gcgactcgca gactgcggtt tagccttttc
    27121 tctggcgctg acactggcat tttccgccaa agagagcgca tttaaggcaa gtgagatcca
    27181 aactgatgca ggttttctgg actatcagat aattagctgg aataaacagc aggtcatcat
    27241 tcatcgtgag aatgagatgt ttgctgtgca ctggcagata aaagaaaaaa tagtcataac
    27301 tctgtgccaa cacgattaat tgacaacatc tggtacgatt cgcccgcagc catcactgac
    27361 cgcgggcgaa agtgtaaagc aggtgcctta ccatcctgac ctgacaaccg gatatgcggg
    27421 gattgctccc cgcacaacgg ctacttcttc ggttcgtaag cgagaacagc cttaaactca
    27481 atattacgtt cctttacggt gaactcacac agcgaatccc cgaccagaag cgtaaatccc
    27541 agcaccgtta aacacagcac tatgactgcc gcaagggcat atttcgtcag catgtttata
    27601 ttgcctccat gcgaagaagg gactaccatc caaattgttc aggtttgggt aggtagcccc
    27661 agggttgata gaaatatcgt cctggggctt catctttcca gacctcagag taaacctgaa
    27721 accggaaagc ttcaggcacc cgcagttatc ttacccttgc ttagcaaaat agctgtttat
    27781 ttatacagta agtcctgttt cggacttctc actccccatt tgatcaactg aagctgaacc
    27841 cgtttttttc tgcatgcctc aatcgtcaaa attcttcgcc acagtcagca ctgccataac
    27901 ttgtcacatt gcaaaagtag ccaaattgct tctgtcataa tcagttcacc atcaccaaaa
    27961 aaaagaaaca ttccagaact tccgcatctc gcccagccgc tcccacttct atactgaata
    28021 gaaaacgcca acataagaga aacctatgcc attacccgat tttcatgttt ctgaaccttt
    28081 tacactcggt attgaactgg aaatgctggt ggttaatccg ccgggctatg acttaagcca
    28141 ggactcttca atactgattg acgcggttaa aaataagatc acggccggag aggtaaagca
    28201 cgatatcacc gaaagtatgc tggagctggc gacggatgtt tgccgtgata tcaaccaggc
    28261 tgccgggcaa ttttcagcga tgcagaaagt cgtattgcag gcagccgcag accatcatct
    28321 ggaaatttgc ggcggtggca cacacccgtt tcagaaatgg cagcgacagg aggtatgcga
    28381 taacgagcgc tatcaacgaa cgctggaaaa ctttggttat ctcattcaac aggtgaccgt
    28441 ttttggtcag catgttcatg ttggctgcgc cagtggcgat gacgccattt atttgctgca
    28501 cggcctgtca cggtttgtgc cgcacttcat cgccctttcc gccgcgtcgc catatatgca
    28561 aggaacggat acgcgttttg cctcctcacg accgaatatt ttttccgcct ttcctgataa
    28621 tggcccgatg ccgtgggtca gtaactggca acaatttgaa gccctgtttc gctgtctgag
    28681 ttacaccacg atgatcgaca gcattaaaga tctgcactgg gatattcgcc ccagtcctca
    28741 ttttggcacg gtggaggttc gggtgatgga taccccgtta acccttagcc acgcggtaaa
    28801 tatggcggga ttaattcagg ctaccgccca ctggttactg acagaacgcc cgttcaaaca
    28861 tcaggagaaa gattacctgc tgtataaatt caaccgtttc caggcctgtc gctatgggct
    28921 ggaaggcgtc attaccgatc cgcacactgg cgatcgtcga ccgctaacgg aagacacctt
    28981 gcgattgctg gaaaaaatcg ccccttccgc acataaaatt ggtgcatcga gcgcgattga
    29041 ggccctgcat cgccaggtcg tcagcggtct gaatgaagcg cagctgatgc gcgatttcgt
    29101 cgccgatggt ggctcgctga ttgggctggt gaaaaagcat tgtgagatct gggccggtga
    29161 ctaagtaggg aattgcctta cagaagaata tccctgacaa tggtgtttta acttacattt
    29221 aacaatgtta tgaaacaccc tttagaaacc ttgactaccg cagcaggcat tttgctgatg
    29281 gctttcctct cttgcctgct gctgcccgcc cccgcactgg ggctgacgct ggcacaaaaa
    29341 ctggtgacca tgttccatct gatggatctt agccagcttt acactttatt gttttgtctg
    29401 tggtttttag tgctgggcgc tattgagtat tttgttctgc gctttatctg gcgacgctgg
    29461 ttctcgctgg cggattaaac gtcgattatc gccgtacttc gcggcatact ttgcttattc
    29521 tccttcgcct aaaggaacgt ttatggataa gcaatcactg cacgaaacgg cgaaacgcct
    29581 ggcccttgag ttaccctttg tcgagctttg ctggcctttt ggcccggagt tcgatgtttt
    29641 taaaattggc ggcaaaattt ttatgctgtc gtcggagctg cgcggcgtcc cctttatcaa
    29701 tctgaagtcc gatccacaaa aatccctgtt aaatcagcag atatacccga gcattaagcc
    29761 agggtatcac atgaataaaa agcactggat ttcggtgtat cccggcgagg aaatctccga
    29821 agcgttactt cgcgatctga tcaacgattc gtggaatctg gtggttgatg gtctggctaa
    29881 acgcgatcaa aaaagagtgc gtccaggcta aagcggaaat ctatagcgca tttttctcgc
    29941 ttaccatttc tcgttgaacc ttgtaatctg ctggcacgca aaattacttt cacatggagt
    30001 ctttatggat atcatttctg tcgccttaaa gcgtcattcc actaaggcat ttgatgccag
    30061 taaaaaactt accccggaac aggccgagca gatcaaaact ctcctgcaat acagcccatc
    30121 cagcaccaac tcccagccgt ggcattttat tgttgccagc acggaagaag gtaaagcgcg
    30181 tgttgccaaa tccgctgccg gtaattatgt gttcaacgaa cgtaaaatac ttgatgcctc
    30241 gcacgtcgtg gtgttctgtg caaaaaccgc gatggacgat gcctggctga agctggttgt
    30301 tgaccaggaa gatgctgatg gccgctttgc cacgccggaa gcgaaagccg cgaacgataa
    30361 aggtcgcaag ttcttcgctg atatgcaccg taaagatctg catgatgatg cagagtggat
    30421 ggcaaaacag gtttatctca acgtcggtaa cttcctgctc ggcgtggcgg ctctgggtct
    30481 ggacgcggta cccatcgaag gttttgacgc cgccatcctc gatgcagaat ttggtctgaa
    30541 agagaaaggc tacaccagtc tggtggttgt tccggtaggt catcacagcg ttgaagattt
    30601 taacgctacg ctgccgaaat ctcgtctgcc gcaaaacatc accttaaccg aagtgtaatt
    30661 ctctcttgcc gggcatctgc ccggctattt cccctcagat tctcctgatt tgcataaccc
    30721 tgtttcagcc gtcatcatag gctgctgttg tataaaggag acgttatgca ggatttaata
    30781 tcccaggttg gggatttagc gggtattgag atcgatcaca ccacctcgat ggtgatgatt
    30841 ttcggtatta tttttctgac cgccgtcgtg gtgcatatta ttttgcattg ggtggtactg
    30901 cggaccttcg aaaaacgtgc catcgccagt tcacggcttt ggttgcaaat cattacccag
    30961 aataaactct tccaccgttt agcttttacc ctgcagggga ttatcgtcaa tattcaggcg
    31021 gtattctggc tgcaaaaagg caccgaagcg gcagatattc tgactacctg cgcgcagttg
    31081 tggatcatga tgtatgcgct gctttcagtc ttctcgttgc tggatgttat tttgaatctg
    31141 gcgcagaaat tcccggcggc atctcagtta ccgctgaaag ggatatttca ggggattaaa
    31201 ctgatcggcg caatcctggt cggcattttg atgatctcgc tgctgattgg tcagtcgcca
    31261 gcgattctga tcagcggtct tggtgcaatg gctgccgtgc tgatgttggt atttaaagat
    31321 ccgattcttg gtctggtggc aggtattcag ctttccgcga acgatatgct gaaactgggc
    31381 gactggctgg agatgccgaa atacggcgcg gatggcacgg tgatcgatat tgggttaacc
    31441 accgtcaaag tgcgtaactg ggacaatacc attaccacta ttcccacctg gtctctggtt
    31501 tctgactcct ttaaaaactg gagcgggatg tcagcatctg gcgggcgacg tattaagcgc
    31561 agtatcagta ttgatgtcac cagtattcgt tttcttgatg aagacgaaat gcaacgtctg
    31621 aataaagcgc acttgttaaa accttattta accagccgcc atcaggaaat taatgagtgg
    31681 aatcgccagc aaggttctac ggagtcgata ttaaacctgc gccgaatgac caatattgga
    31741 acctttcgtg cctatctgaa cgaatatctg cgtaaccatc cgcggattcg taaagatatg
    31801 accttaatgg tacgccaact ggctccaggt gataacggtt taccgctcga gatctacgcg
    31861 tttaccaaca ccgtggtgtg gctggaatat gaaagcattc aggctgatat attcgatcac
    31921 atatttgcga ttgtcgaaga gtttggtctg cgacttcatc agtcgccagc cggcaatgat
    31981 attcgctctc tggcgggtgc atttaagcag taattaaaaa aaccgctctc atcgaatgga
    32041 tgagagcgga catcgttttg tcggatgtag cgtgaatgcc ttatttccga cgcagcgttt
    32101 taaatgccac aaacaggaat acaatccaca ccggcagcag gatcgctgac aagcgcatat
    32161 catccatcgt gcacatcagc agcaaaatca tgccgaggaa ggcaatgcaa agatagttgc
    32221 cgaacggata aagcagcgcc ttaaactgtg tttcacgtcc ctgacgtcgc atcgccgcgc
    32281 gaaaacgcag atgcgccagg cagatcataa tccagttcaa cagcagcgtt gctaccacca
    32341 gcgccatcag cagaccaaac gctttttgcg gcagcagata gttgattaac accaccagcg
    32401 aagtgatcgc tccggaaagc atcagcgagt taatcggcac gccgcgatgg ctgacgcgag
    32461 tcaaaaactt cggcgcatta ccctgcacag aaaggccaaa cagcatgcgg ctgttagagt
    32521 aaaccccgct gttatacact gacagcgatg ctaccagaat gacgaagttc agcgcagaag
    32581 ctacctcgtt gctgtcgaga ttatggaaaa tcatcacaaa cgggctactg ttggatttca
    32641 cttccaccca cggatagagc gccagtaaaa ccaccagtga acagatgtaa aacagcagga
    32701 tgcgatacac cacctgattt accgcttttg gaatgctttt ttccggatcg cgcgcttcag
    32761 cggcagtaat cccaatcagc tccagaccgc cgaaggagaa cataattacc gccagcgaca
    32821 aaatcagccc attccagccg gtggcgaaga aaccaccgta gcgccagagg ttgtcgatac
    32881 tggctttctc gccgccgtga ccagaaaaca gcagccacag gccaaagccg atcataccga
    32941 tgattgccag cactttaatc aacgcaaacc agaactcggt ttcgccatat aagcgcacgt
    33001 tcaccaggtt aacggcgttg atgataataa agaaggcggc agcccaaatc cacgttggaa
    33061 catccgggaa ccagtactgc atatagatgc ccgcagcggt cagctctgcc attcccacca
    33121 gcacgaacat tacccagtag ttccagccag agaggaagcc cgcaaacggt ccccagtatt
    33181 tataggcaaa gtgggcaaat gaaccggata ccggctcttc gaccaccatc tcgccgagct
    33241 ggcgcataat caggaaagcg atgatcccgg cgacgccgta gcccagcaat acagccggac
    33301 ccgccatctg aatcgccggg ccaatgccaa gaaacagacc agtaccaatt gcgccaccca
    33361 gcgcaatcag ttgaatatga cggttatgta atccgcgatg aagcgtcggc tcttgatttg
    33421 acgcagtatc ttccgatacg gttgacgcgt ttttcacgcc tttcccctgt gtgtcttttt
    33481 tgttgagggg caccttttaa catttagtgc ccatcgtcgc aagacacaat ccacacggtt
    33541 aaacggggta tcctgctttt atttccgtac ccgatgtcgg tgcagccaca tcagcttata
    33601 cgccgccggg ataataaaca gcgacagcaa aggcgcggtg atcatgccgc caatcatcgg
    33661 tgcggcaatc cggctcatca cctctgaacc agcccccgtt ccccacagaa tcggcagcag
    33721 accggcgata atcaccgcca ccgtcatcgc tttcgggcgc acgcgcagta ccgcgccgtg
    33781 atacaacgcc tcatccagct tctgctcact gaatgtttgc ggattattca acgacggctc
    33841 ggcctctatg gcgtgacgta aatacatcag catcaccacg ccaaattcgg cggcgccccc
    33901 ggcaagggca ataaaaccgg tgcccgttgc cacagaaaga tgaaagccca tccaccacag
    33961 caaccagatg ccgcccacca gcgcaaacgg tacgctgctg ataatcagca acgcttcgcc
    34021 cacccgacgg aatgccagat acaacagcac gaagatgatc atcagtgtca tcggcaccat
    34081 gagtttcagc ttatggttgg cgcgctccag tagctcgaac tgcccggaga atgccacgct
    34141 ggtgcccggt tttaactgca ctttttcaac tatcgctttt tgcaaatcgt gaaccaccga
    34201 caccatgtca cgatcgcggg catcgatata aatccagctc gtcgggcgcg cattctcggt
    34261 tttcagcatc gacggtccgg tagagacttt aacgtcggcc acgtctgcca gggtgatttg
    34321 ctgcttcatc ggcgtcagga tcggtagctg gcgcagtgcc tgcgggctat cgcgccagct
    34381 ttgcggataa cgcagattaa tgggataacg ggcaatccct tccaccgttt cgccaaccat
    34441 cgccccgccc accgcagaag tcacaaacaa ctgcacatcc gccaccgtca taccgtaacg
    34501 cgcggctttt tcacggttaa tctcaacgtt gatatagcgc ccaccttcca gacgctcggc
    34561 aagcgcagaa gccacgcctg gcaccgttcg cgctacttct tcaatttgct cagccatcgc
    34621 gtcgatatcc gccagcacag tgccggaaac tttaatgccg atggggcttt taatgccggt
    34681 tgagagcata tcgatacggt tacgaattgg cggcacccac agattcgcca gccccggcag
    34741 ccgcacggtg ttatccagtt cctcaatgat tttgtccatc gtcatgccag gccgccactg
    34801 atcctgcggc ttaagctgga tggtcgtttc aaccatctcg agcggagcag aatcggtggc
    34861 ggtttccgct ttcccggttt tgccaaatac ccgcgccact tcaggtacgc tcataattag
    34921 cttgtcgttt ttttgcagca tactcgccgc ctctgctgcg gaaatccccg gcagcgtcga
    34981 tggcatatac aacaagtcgc cttcattgat ctgcggtaaa aattccccgc caactttatt
    35041 gagcggccag agaaccgtca gcaccgaaag cgctgccacc aacagcgtgg ttttcggcca
    35101 gtgcagtact ttcagcaata gaggatgata aacacgaatc aaaaagcgat tgagcgggtt
    35161 actgctttcc ggcggaattt tgccacggat ccagtaaccc atcaggatcg ggatcactac
    35221 gatcgccagc agcgccgcac ccgccatcgc atacgttttg gtgaacgcca gcgggccaaa
    35281 cagacgccct tcttgccctt ccagggtgaa gattgggata aacgacagcg tgataatcag
    35341 cagactgata aacagcgccg gccccacttc aacagatgca tcggtaatca cctgccagcg
    35401 cgttttatta tccagcgtgg cgtcaggatg ctggtgctgc cactcttcca gccgtttatg
    35461 cgcattctcg atcatgacga tagcagcatc gaccatcgcc ccgacggcaa tcgcaatgcc
    35521 acccaacgac ataatattgg cattcagtcc ctggaagggc atgacaataa aagcaataca
    35581 caaccccagc ggcaacgaaa taatcgccac cagcgccgag cgcacatgcc agagaaacag
    35641 cgcacagact accgccacca caataaactc ttccagcaac ttgccgctga ggttgtcgat
    35701 ggcgcggtca atgagctggc tgcgatcgta tgttgtaact atctccacgc cttccggcag
    35761 actacttttc agcgtttcca gtttgtcctt cacggcggcg atcacttctc gggcgttttt
    35821 gccggagcgc aggatcacca ccccgcccgc cacttcgcct tcgccgttca gttcggcaat
    35881 gccccggcgc atctccgggc caacctggac cttcgcaaca tcgcgcagat aaacgggcac
    35941 gccattttca ctggctttta aaacgatgtg attaaagtcg tcgagcgttt gcagatagcc
    36001 gctggcgcgc accatatatt ccgcttccgc cagttcgatc gacgaaccgc ccgcttcctg
    36061 gtttgaagca tccagcgcgc tttttacttc ggcgagactg atgccatact gcgccaggcg
    36121 ctggggatcg ataaccacct gatactcttt caccacaccg cccaccgacg ccacttccgc
    36181 aacgtcaggg atggttttca gctcatattt gagaaaccag tcctgtaatg agcgtaaatc
    36241 ggccagatcg tgcttaccgc tgcgatccac cagtgcatat tcatagatcc agccaacacc
    36301 cgtggcatct ggccccagct cggcgctgac tcccgcaggc agcttaccct gtacctggtt
    36361 gaggtactcc agcacccgcg aacgcgccca gtacggatcg gtaccatctt cgaaaatgac
    36421 atacacataa gagtcgccaa actgcgagaa accacgcaca gtcttcgcgc cagcgcaccg
    36481 acaacatggt ggtggttagc ggataagtca cctgattttc aacgatttgc ggtgcctgcc
    36541 cgggatagct ggttttaata atcacctgca catcggagag atccggcagc gcatccactg
    36601 gcgtattaat gatggtccag gtgccccaga tgctaagaaa caacgcgccc atcagcacca
    36661 aaaaacggtt cgccaccgag cgacgaataa tccattcaat cattggttat tccctcaatg
    36721 cgcatgggta gcactttcag agcgcatccg ctccagtgcg ccagaaatat tggcttcgga
    36781 atcaatcagg aaaaggccgc tggaaaccac cttttcacct tccgccagac cagagcgtaa
    36841 tgcggtgaca ccttgcgatg cctggaaaac ggcaacgcgt ttcggtacaa agcgcccgtc
    36901 ggcatcaatg gtaatcaccc gctgttcgct accggtatca atcagccctt gtgacggaat
    36961 gagcagcatc ggttcgctgg cggtattgag ttgcaaccag gcgttcatgc ccggttttag
    37021 cgcctcgtcg gcgttgtcga cttccagacg cagctgcagc gtgcgggtcg cggcatccac
    37081 gccgggtagc agcgtccatt tgcggatggt gagtgtttta tccggtcgtg ccggaacggt
    37141 gagcgtaaac tgcgaggcat ctttcaccag ccaggcgata gactccggga tcgcagcagt
    37201 gacccacacc gggtccatac cctgaatttt cgctaccacg ttatctttgg cgatattcat
    37261 tcccgcgcgc agatcaaacg cggtgatcac gccatcaatg ggcgctttga gcgtaaagcg
    37321 agtctggatt ttttgcgtgg cgatcaggcg gcgaatatcc gcctccggca ttcccgccag
    37381 tcgcagccgc tcaagaatgc cttcagtctg ggtcgccgta ccgccggttt cgcgcagcag
    37441 taaatactca ctctgcgctt ccacccagtc aggaatggtc aggtcgagaa gcggtgtgcc
    37501 cttttgtact ttatcgccca cggtaagcgg atacaccttg tcgataaacc cggcagcgcg
    37561 agcctgcaca atggcatact gatactcgtt gtaactgaca ttcgccggga aactctgggc
    37621 aaaagtcagc ggtccgcgcg tgacggtagc cgttttcacc cccagattct gcgtctgagt
    37681 cgggtcaatg cgcacaccag acgcagaact ctcttcatcg gcatatttcg gcaccagatc
    37741 catatccata aacggcgatt tacctggttt atcgaaccgc gtattggggt acatcgggtc
    37801 gtaccagaat aagattttac gt
//
LOCUS       DAJVUP010000019        37320 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.019, whole genome shotgun sequence.
ACCESSION   DAJVUP010000019 DAJVUP010000000
VERSION     DAJVUP010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37320
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.019"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..809)
                     /locus_tag="OQQ75_000918"
     CDS             complement(<1..809)
                     /locus_tag="OQQ75_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HCS1975329.1"
                     /translation="MTIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREA
                     NIVSAKALHKALGVGRDFTNWIKGRIDQYGFIAGTDFIRVENLSTPKRASAKTRQQIE
                     HDYLLSLDMAKEVAMVERNEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAA
                     NNFKPMCDALNMARAEMGKTTQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRD
                     SMNAAQLEHLAYLESTNITLIDMGMEYEQRKGELTRLSQRWLAKRLEVNHA"
     gene            complement(823..1254)
                     /locus_tag="OQQ75_000919"
     CDS             complement(823..1254)
                     /locus_tag="OQQ75_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001437021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975330.1"
                     /translation="MEKKNRPLQAANSDIRVSDVTPLTKSLQAPKRTPKKHRARVYML
                     RTGIEGWTENDILRYCRLSSGRNYASELERRLDIQLERIDEKNPDGIGSHLRYRFTGR
                     GDVLKVIRLVNHNADAGGYQGLSQPEIADILNLYPDNLTAA"
     gene            complement(1254..1457)
                     /locus_tag="OQQ75_000920"
     CDS             complement(1254..1457)
                     /locus_tag="OQQ75_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HCS1975331.1"
                     /translation="MNIDTIPTKGYIRRFRLAELLGVSVSTIDRKVRNGSLPRPVKLG
                     EKITAFDAVEIHNWLAERRGKVA"
     gene            complement(1570..2418)
                     /locus_tag="OQQ75_000921"
     CDS             complement(1570..2418)
                     /locus_tag="OQQ75_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975332.1"
                     /translation="MKKLPPAPFFRLNRAAELLEIDIDDLLIMAAAESIYLSAYLCGY
                     DGTLHSIASLYRNCSLFPDVKEDCLLLADIITEVEDEKSFKAGVVNHIDCHVLGLWHV
                     NASYILDIAGLDSIDTPARIFSPAHRKRELDVSANYYFFLDYTKHAFHEISVEDLYIT
                     RPWVEYIGECMDKNQPIYSPETRINLQALYEDVKNVEHGNRERHRQKREICLLALIYV
                     KRHYPEECKGKNGKETNEAWANATINHWALLGGGYDEPSIDYLKKLIADADRTPEERT
                     TAGKKR"
     gene            complement(2514..3773)
                     /locus_tag="OQQ75_000922"
     CDS             complement(2514..3773)
                     /locus_tag="OQQ75_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1975333.1"
                     /translation="MPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFR
                     YKLAGKSRAMLIGSYSELSLSKARETAKELSARVALGYDVAGEKQKRKTEALAKMEAE
                     KNAMRVSELAAEYFERQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLK
                     GIVDRGAPTIATDVLRWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRD
                     ELIQLFKAMRTAKGFSRQNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERS
                     KNGDPIDIPLPSPAVEWLRELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVR
                     AEMPDVPNFTIHDFRRTARTHLAALGVDPVVAERCLNHRIKGVEGIYNRHQYFDERKA
                     ALAQWADLLVALESGKDYNVTPLRRAN"
     gene            complement(3964..4827)
                     /locus_tag="OQQ75_000923"
     CDS             complement(3964..4827)
                     /locus_tag="OQQ75_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HCS1975334.1"
                     /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS
                     LEPVVRERIRSRLTRGKVECTLRYEPDISAQGELILNEKLAKQLVTAANWVKMQSDEG
                     EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL
                     EGVTAEVVKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEEL
                     DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI
                     EQMREQIQNIE"
     gene            4954..5670
                     /gene="rph"
                     /locus_tag="OQQ75_000924"
     CDS             4954..5670
                     /gene="rph"
                     /locus_tag="OQQ75_000924"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HCS1975335.1"
                     /translation="MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE
                     EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV
                     DLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVA
                     AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLL
                     ALARGGIESIVATQKAALAN"
     gene            5736..6377
                     /gene="pyrE"
                     /locus_tag="OQQ75_000925"
     CDS             5736..6377
                     /gene="pyrE"
                     /locus_tag="OQQ75_000925"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HCS1975336.1"
                     /translation="MKPYQRQFIEFALGKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLALLGRFYAEALVDSGLEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEA
                     KDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERG
                     RGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV"
     gene            complement(6414..7010)
                     /gene="slmA"
                     /locus_tag="OQQ75_000926"
     CDS             complement(6414..7010)
                     /gene="slmA"
                     /locus_tag="OQQ75_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000818604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HCS1975337.1"
                     /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS
                     EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERN
                     PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLAS
                     QILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ"
     gene            complement(7117..7575)
                     /gene="dut"
                     /locus_tag="OQQ75_000927"
     CDS             complement(7117..7575)
                     /gene="dut"
                     /locus_tag="OQQ75_000927"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HCS1975338.1"
                     /translation="MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELA
                     PGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVW
                     NRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ"
     gene            complement(7553..8773)
                     /gene="coaBC"
                     /locus_tag="OQQ75_000928"
     CDS             complement(7553..8773)
                     /gene="coaBC"
                     /locus_tag="OQQ75_000928"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HCS1975339.1"
                     /translation="MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAK
                     AFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGM
                     ANDLVSTICLATPAPVAVLPAMNQQMYRAAATQHNLEGLASRGLLIWGPDSGSQACGD
                     IGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGF
                     AIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAA
                     VADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNV
                     EEYARQKRIRKNLDLICANDVSQPTQGFNSENNALHLFWQDGDKVLPLERKELLGQLL
                     LDEIVTRYDEKNRR"
     gene            8945..9613
                     /gene="radC"
                     /locus_tag="OQQ75_000929"
     CDS             8945..9613
                     /gene="radC"
                     /locus_tag="OQQ75_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HCS1975340.1"
                     /translation="MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTL
                     AKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLL
                     SPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
                     KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAE
                     RGWI"
     gene            9830..10066
                     /gene="rpmB"
                     /locus_tag="OQQ75_000930"
     CDS             9830..10066
                     /gene="rpmB"
                     /locus_tag="OQQ75_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HCS1975341.1"
                     /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK
                     RFVTLRVSAKGMRVIDKKGIDTVLAELRARSEKY"
     gene            10087..10254
                     /gene="rpmG"
                     /locus_tag="OQQ75_000931"
     CDS             10087..10254
                     /gene="rpmG"
                     /locus_tag="OQQ75_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HCS1975342.1"
                     /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
                     QHVIYKEAKIK"
     gene            10352..11161
                     /gene="mutM"
                     /locus_tag="OQQ75_000932"
     CDS             10352..11161
                     /gene="mutM"
                     /locus_tag="OQQ75_000932"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HCS1975343.1"
                     /translation="MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRL
                     SDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV
                     LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMD
                     NKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLK
                     DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK"
     gene            complement(11200..11679)
                     /gene="coaD"
                     /locus_tag="OQQ75_000933"
     CDS             complement(11200..11679)
                     /gene="coaD"
                     /locus_tag="OQQ75_000933"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HCS1975344.1"
                     /translation="MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP
                     MFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQL
                     AHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA"
     gene            complement(11687..12964)
                     /gene="waaA"
                     /locus_tag="OQQ75_000934"
     CDS             complement(11687..12964)
                     /gene="waaA"
                     /locus_tag="OQQ75_000934"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HCS1975345.1"
                     /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRH
                     PLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQ
                     HVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSA
                     AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLA
                     AKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQVLLQQFPNLLLILVPRHPERFPD
                     AINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH
                     NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRS
                     FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH"
     gene            13377..14435
                     /gene="rfaQ"
                     /locus_tag="OQQ75_000935"
     CDS             13377..14435
                     /gene="rfaQ"
                     /locus_tag="OQQ75_000935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptosyltransferase
                     RfaQ"
                     /protein_id="HCS1975346.1"
                     /translation="MDKLFRRILLIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ
                     DTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIVNLTDQWMVAI
                     LVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLRVDSLVKQT
                     TMSYPPASWKRMRRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEV
                     VLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVTFPELGALIDHAQLFIGVDSAPAHI
                     AAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPAAD
                     VIAAVDKLLPSSTTGTSL"
     gene            14432..15556
                     /locus_tag="OQQ75_000936"
     CDS             14432..15556
                     /locus_tag="OQQ75_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1975347.1"
                     /translation="MIVAFCLYKYFPFGGLQRDFMRIAQTVAARGHHVRVYTQSWEGE
                     YPDVFELIKVPVKSHTNHGRNAEYFAWVQKHLREHPVDKVVGFNKMPGLDVYYAADVC
                     YAEKVAQEKGFFYHLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAE
                     RFHILPPGIYPDRKYSQQPANSREIFRKKNGITEQQYLLLQVGSDFTRKGVDRSIEAL
                     ASLPDSLRHNTLLYVVGQDKPRKFEALAEKRGVRSNVHFFSGRNDVSELMAAADLLLH
                     PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAIAEPFRQETLNEILRKA
                     LTQSSLRQAWAENARHYADTQDLYSLPEKAADIITGGLDG"
     gene            15549..16346
                     /gene="rfaP"
                     /locus_tag="OQQ75_000937"
     CDS             15549..16346
                     /gene="rfaP"
                     /locus_tag="OQQ75_000937"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HCS1975348.1"
                     /translation="MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAG
                     KSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGI
                     NPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
                     RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGL
                     TQRDIWRFMKVYFATPLKDILKQEQGLLSQAEAKATKIRERTIRKSL"
     gene            16362..17378
                     /gene="waaO"
                     /locus_tag="OQQ75_000938"
                     /gene_synonym="rfaI"
     CDS             16362..17378
                     /gene="waaO"
                     /locus_tag="OQQ75_000938"
                     /gene_synonym="rfaI"
                     /EC_number="2.4.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     3-alpha-galactosyltransferase"
                     /protein_id="HCS1975349.1"
                     /translation="MSAHYFNPQEMINKTIIFDERPAASVASSFHVAYGIDKNFLFGC
                     GVSITSVLLHNNDVSFVFHVFIDDIPEADIQRLAQLAKSYRTCIQIHLVNCERLKALP
                     TTKNWSIAMYFRFVIADYFIDQQDKILYLDADIACQGNLKPLITMDLANNVAAVVTER
                     DANWWSLRGQSLQCNELEKGYFNSGVLLINTLAWAQESVSAKAMSMLADKAIVSRFTY
                     MDQDILNLILLGKVKFIDAKYNTQFSLNYELKKSFVCPINDETVLIHYVGPTKPWHYW
                     AGYPSAQPFIKAKEASPWKNEPLMRPVNSNYARYCAKHNFKQNKPINGIMNYIYYFYL
                     KIIK"
     gene            17395..18390
                     /locus_tag="OQQ75_000939"
     CDS             17395..18390
                     /locus_tag="OQQ75_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide 1,2-glucosyltransferase"
                     /protein_id="HCS1975350.1"
                     /translation="MNEFIKERFSYLADNKKENAPELNVSYGIDKNFLYGAGVSISSV
                     LINNSDINFVFHVFTDYVDDDYLKSFNETAKQFNTSIIVYLIDPKYFADLPTSQFWSY
                     ATYFRVLSFEYLSESISTLLYLDADVVCKGSLKPLTEIIFKDEFAAVIPDNDSTQAAC
                     AKRLNIPEMNGRYFNAGVIYVNLKKWHEANLTPYLLKLLRGETKYGSLKYLDQDALNI
                     AFNMNNIYLAKDFDTIYTLKNELYDRSHRKYQQTITDKTVLIHYTGITKPWHSWAGYP
                     SASYFNIAREQSPWKKYPLKEARTVAEMQKQYKHLFAHGEYIKGITSLIKYKLKK"
     gene            18400..19092
                     /gene="rfaY"
                     /locus_tag="OQQ75_000940"
     CDS             18400..19092
                     /gene="rfaY"
                     /locus_tag="OQQ75_000940"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II) kinase RfaY"
                     /protein_id="HCS1975351.1"
                     /translation="MITSIRYRGFSFYYKDNDNKYKEIFDEILAYNFKTVKVLCNIDD
                     TKVSLIDTKYGRYVFKVFAPKTKRNERFLKSFVKGDYYQNLIVETDRVRSAGLTFPND
                     FYFLAERKIFNYASVFIMLIEYVEGVELNDMPIIPENVKAEIKASMEKLHALNMLSGD
                     PHRGNFIVSKDGVRIIDLSGKSCTAERKARDRLAMERHLGIANEIKDYGYYSVIYRTK
                     LRKFIKKLKGKA"
     gene            19118..20143
                     /locus_tag="OQQ75_000941"
     CDS             19118..20143
                     /locus_tag="OQQ75_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactose--(galactosyl) LPS
                     alpha1,2-galactosyltransferase"
                     /protein_id="HCS1975352.1"
                     /translation="MDLLAESITEVAVSGEIANTDRVLNIAYGIDRNFLFGAAVSMQS
                     VVMHNPDLAVKFHLFTDYIDEDYLQRVNAFTSKNANVEVIIYKVSNAFIDIFPSLKQW
                     SYATFFRLVAFQYLSETIENLLYIDADVICKGSLAGLLDINFDEDKFAAVIKDVPFMQ
                     EKPAKRLAIEGLPGNYFNAGVVYLQLEAWAKNDFMNKAIAMLASDPQHTKYKCLDQDI
                     LNILFFGHCNFISGDYDCFYGIDYELKNKSDEDYKKTITDDTKLIHYVGVTKPWNDWT
                     NYPCQKYFNEAYQASCWNDVAFIPATNEKQYQVKYQHAKKNGDTFNAFIYFIKFKLNK
                     YKRKLFG"
     gene            20228..21211
                     /locus_tag="OQQ75_000942"
     CDS             20228..21211
                     /locus_tag="OQQ75_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCS1975353.1"
                     /translation="MSNDYPLVSIIIPTYNSSDYITETLTKLEKQTYPNFEIVIVNDG
                     SKDNTSNVLREYGLTHSRLIIVNKENGGVSSARNTGIRKAQGQFICFMDDDDEIDPNY
                     LLKMYTRQHETGGDAIYCGLYGHYIKDGVTYSPINTEFNEGSLLFDFFYKKVRFHIGC
                     LFIRKQLLEENNLFFDEDLRLGEDLDFIYRLLITCDMYAVPYYMYKHNYRENSLMNSC
                     RTITHYRHESFAHERIYSSVMQLYKGNRKEEIHTLLSQNRAYHKTRYLWNVLLNGDFK
                     LLNQLVESNEKELRYCNLPGKRDKRRAKILASKNYILWRMVRLVNRKKNKR"
     gene            21257..22510
                     /locus_tag="OQQ75_000943"
     CDS             21257..22510
                     /locus_tag="OQQ75_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012311869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HCS1975354.1"
                     /translation="MSFCWNEINSGIKSLILILCIFSLMTLSLWDDVATKFLHAAGII
                     SALYFLATPKKTITNNPTLLIFISLCLLGIVNIIWYSHYKVSGSVYTNAYRGPMETGK
                     IALCSAFIFLVLFAKNEMRTKIKFGKLILFASLATQLLFFAHAMWQHFYLNVDRVALS
                     ASHATTAGYIILFPSLLASILILKSDFRHKTTLYTINFMLSLCAVIVTETRAAILVFP
                     FFALILIVMDSYINKRINYKLYCFIAIALLAGVFSFKDTLLMRMNDLNNDLVNYSHDN
                     TRTSVGARLAMYEVGLKTYSPIGQSLEKRAEKIHELEEKEPRLSGALPFVDSHLHNDL
                     IDTLSTRGIPGVVLTILAFSAILIYALRTAKEPYILILLFSLLVVGLSDVILFSKPVP
                     TAVFVTIILLCAYFKAQSDQYLLDK"
     gene            complement(22580..23560)
                     /gene="rfaC"
                     /locus_tag="OQQ75_000944"
     CDS             complement(22580..23560)
                     /gene="rfaC"
                     /locus_tag="OQQ75_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HCS1975355.1"
                     /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQI
                     PSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAAL
                     VTRLAHGVKHGLDWQTAREPLASLFYNCKHHIAKQQHAVERTRELFAKSLGYSKPQTQ
                     GDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWG
                     APHEEERAKRLAEGFDYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNI
                     TVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKRFIEENAENAAMI"
     gene            complement(23564..24610)
                     /gene="rfaF"
                     /locus_tag="OQQ75_000945"
     CDS             complement(23564..24610)
                     /gene="rfaF"
                     /locus_tag="OQQ75_000945"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HCS1975356.1"
                     /translation="MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL
                     LSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGI
                     PHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQL
                     QVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVL
                     FGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVA
                     AALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQR
                     VLEELNTLLLQEEA"
     gene            complement(24620..25552)
                     /gene="rfaD"
                     /locus_tag="OQQ75_000946"
     CDS             complement(24620..25552)
                     /gene="rfaD"
                     /locus_tag="OQQ75_000946"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HCS1975357.1"
                     /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD
                     LDIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH
                     YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS
                     QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA
                     DVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT
                     QADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA"
     gene            25766..26962
                     /gene="kbl"
                     /locus_tag="OQQ75_000947"
     CDS             25766..26962
                     /gene="kbl"
                     /locus_tag="OQQ75_000947"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HCS1975358.1"
                     /translation="MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV
                     INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM
                     EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQE
                     LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV
                     GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS
                     LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD
                     AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK
                     QLGVIA"
     gene            26972..27997
                     /gene="tdh"
                     /locus_tag="OQQ75_000948"
     CDS             26972..27997
                     /gene="tdh"
                     /locus_tag="OQQ75_000948"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HCS1975359.1"
                     /translation="MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHI
                     YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG
                     RTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF
                     DLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKE
                     NLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV
                     IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG
                     KVILSWD"
     gene            28236..29270
                     /gene="waaH"
                     /locus_tag="OQQ75_000949"
                     /pseudo
     CDS             28236..29270
                     /gene="waaH"
                     /locus_tag="OQQ75_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418072.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronate:LPS(HepIII) glycosyltransferase"
     gene            complement(29257..30216)
                     /locus_tag="OQQ75_000950"
     CDS             complement(29257..30216)
                     /locus_tag="OQQ75_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312519.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HCS1975360.1"
                     /translation="MFPFRRNVLAFAALLALSSPVLAGKLAIVIDDFGYRPHNENQVL
                     AMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDE
                     IERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
                     MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPLTVRVL
                     QQMVYNLPPDITLVKASSLLNEPQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPV
                     YANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKFNASAN"
     gene            complement(30220..31503)
                     /gene="envC"
                     /locus_tag="OQQ75_000951"
     CDS             complement(30220..31503)
                     /gene="envC"
                     /locus_tag="OQQ75_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HCS1975361.1"
                     /translation="MRGKAINTMTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADE
                     RDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNK
                     QIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQCGQRLQAYF
                     GYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKK
                     TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDRQKEA
                     TRKGTTYKPTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIG
                     ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQ
                     PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR"
     gene            complement(31513..33057)
                     /gene="gpmM"
                     /locus_tag="OQQ75_000952"
                     /gene_synonym="pgmI"
     CDS             complement(31513..33057)
                     /gene="gpmM"
                     /locus_tag="OQQ75_000952"
                     /gene_synonym="pgmI"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HCS1975362.1"
                     /translation="MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPH
                     TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGA
                     VDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR
                     SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADT
                     AVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVN
                     ADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISET
                     EKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKY
                     DTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQ
                     MRDPATGQAHTAHTNLPVPLIYVGDKNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGK
                     PLFIVE"
     gene            33302..33733
                     /locus_tag="OQQ75_000953"
     CDS             33302..33733
                     /locus_tag="OQQ75_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCS1975363.1"
                     /translation="MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGE
                     ATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDG
                     SGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK"
     gene            33875..34126
                     /gene="grxC"
                     /locus_tag="OQQ75_000954"
     CDS             33875..34126
                     /gene="grxC"
                     /locus_tag="OQQ75_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HCS1975364.1"
                     /translation="MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM
                     IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK"
     gene            34189..34656
                     /gene="secB"
                     /locus_tag="OQQ75_000955"
     CDS             34189..34656
                     /gene="secB"
                     /locus_tag="OQQ75_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015369180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HCS1975365.1"
                     /translation="MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDL
                     DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYC
                     PNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA"
     gene            34656..35675
                     /gene="gpsA"
                     /locus_tag="OQQ75_000956"
     CDS             34656..35675
                     /gene="gpsA"
                     /locus_tag="OQQ75_000956"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HCS1975366.1"
                     /translation="MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATL
                     ERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPD
                     ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD
                     QTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
                     ITRGLAEMSRLGAALGAEPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSA
                     QEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKD
                     ERSSH"
     gene            35755..36576
                     /gene="cysE"
                     /locus_tag="OQQ75_000957"
     CDS             35755..36576
                     /gene="cysE"
                     /locus_tag="OQQ75_000957"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HCS1975367.1"
                     /translation="MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSA
                     LSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL
                     LYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHAT
                     GIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA
                     KIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI"
     gene            complement(36629..37102)
                     /gene="trmL"
                     /locus_tag="OQQ75_000958"
     CDS             complement(36629..37102)
                     /gene="trmL"
                     /locus_tag="OQQ75_000958"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HCS1975368.1"
                     /translation="MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL
                     RRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE
                     TRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRD"
BASE COUNT         9248 a         8883 c         9297 g         9892 t
ORIGIN      
        1 tacgcatggt ttacctccag acgtttagcg agccagcgtt gcgacaggcg ggtgagttct
       61 cctttgcgct gctcatattc catgcccata tcaattaacg tgatattggt gctttcgaga
      121 taggcgaggt gttcaagctg tgctgcgttc atgctgtccc gtggttcgcc agtaatgcca
      181 tttgcctgcg cccactgctt cgccgtcatg ccacccagca cgatacgggc gatcatgttg
      241 ctctcgttgc tgtagtggcg ctgctgcgtc gttttgccca tctcggcacg ggccatattc
      301 agcgcatcgc acattggctt aaagttgttt gcggcactga gacgggcttt tagctggcga
      361 cgatagcggg cggcgatttc aggcacgcta cgctgtaatt cttcctcgca ctggatgaaa
      421 taacggcgga tagcgcggcc ctgctcgttg cgttcaacca ttgccacttc tttagccata
      481 tccagcgata gcaggtaatc atgctctatt tgctggcgag tttttgcgct cgcccgtttt
      541 ggcgtgctca aattttcaac acggataaaa tcggttccgg caataaaacc gtactggtca
      601 attcggcctt taatccagtt agtaaagtcg cggcccaccc ccagcgcttt atgcaacgcc
      661 ttagcgctca caatattggc ttcacgcccg ccaatgcgtc cggcaataac gggaacaata
      721 gcggcaaagt cgttgccgtt aattactccc gtgttaacgt tgggttgcgg ggcggccccc
      781 gaactgaatc ggcttttttc gatagtcata ttttcggctc cgttatgcgg cggtgagatt
      841 gtccgggtat agattgagaa tgtcggcaat ttcaggctga gaaagtccct gatagccgcc
      901 agcgtcggcg ttatggttca caagccgaat aacttttaga acgtcaccgc gcccggtaaa
      961 gcgatagcgt aaatgtgacc ctatcccgtc ggggttcttt tcgtctatac gctcaagctg
     1021 aatatcaagc ctgcgctcta actcgctggc gtagttcctt ccagacgaaa ggcggcaata
     1081 acgcagaatg tcattttctg tccatccctc tataccagta cgcagcatat agactctggc
     1141 acgatgcttt ttcggtgtgc gctttggtgc ttgaagggat tttgtaaggg gcgtaacatc
     1201 agatacgcga atatctgaat tagccgcctg taatgggcgg tttttctttt ccatcaggcc
     1261 accttcccgc ggcgttctgc cagccagttg tgaatctcaa ccgcatcaaa cgcagttatt
     1321 ttttctccca gctttaccgg acgtggtagt gaaccgtttc ttactttacg gtcgatggtg
     1381 gatacactaa cgcccagcaa ttcagccagg cggaagcgtc tgatatagcc ttttgtaggg
     1441 atagtgtcga tgttcatgat tcccgtaacc tcttagcgat agttgttgct tcgttacggg
     1501 tatttaatgg cgtgcacgct caaaaaggaa tgatcgtatt ttttactatc gtgatagtaa
     1561 aatttactat cacctttttt tccctgccgt ggtgcgttct tccggtgttc tgtctgcgtc
     1621 ggctatgagt ttcttcaggt aatctatgga tggctcatca tagccgcccc ccaaaagcgc
     1681 ccagtggttt attgtggcgt tcgcccatgc ttcgttggtt tccttcccgt tcttcccttt
     1741 acactcttct gggtagtgcc gcttcacata aatcaacgcc aagaggcaaa tttcgcgctt
     1801 ttgcctgtgg cgctctctgt ttccgtgctc aacgttttta acatcctcat aaagagcttg
     1861 taagtttatg cgagtttcgg ggctgtatat gggctggttt ttgtccatgc attcgccgat
     1921 atattcaacc cacggccttg ttatgtacaa atcctctacg gatatttcgt ggaaggcatg
     1981 ttttgtataa tcgagaaaaa aataataatt cgcacttacg tctagttctc tttttctgtg
     2041 tgcggggctg aatatgcgtg cgggagtgtc aatagaatca agccctgcga tgtcgagtat
     2101 ataggaggcg ttaacatgcc atagcccaag cacatggcaa tctatatgat ttacaacgcc
     2161 tgccttaaag cttttttcgt cctctacttc agtgattatg tcggcaagta ataagcagtc
     2221 ttctttgacg tctgggaata aagagcaatt gcggtaaaga ctcgcgatgc tatgtaatgt
     2281 gccgtcgtag ccgcaaaggt acgcgctcaa atatatagat tctgccgccg ccataatcaa
     2341 aagatcatca atatctattt ctaataattc ggctgctctg ttaagcctga aaaaaggggc
     2401 gggtggtaat tttttcattg tgtcaccttt tacgctgcgc cttattttgt gattgagcca
     2461 ggcggtaagg cttcccgctt ttcgccccgt cgagctaggc tcaatctatt cagttagttc
     2521 gcccttctga gaggcgttac gttgtagtct tttccgcttt ccagtgccac cagcagatca
     2581 gcccactgtg ccagtgctgc tttacgctca tcaaaatact gatggcggtt ataaatcccc
     2641 tctacgccct taatgcgatg attgaggcat cgttccgcca caacaggatc aacacccaac
     2701 gctgctaaat gagtacgtgc ggtgcgtcga aagtcgtgaa tcgtgaaatt aggcacatcc
     2761 ggcatttcgg cgcgaacctt agccagtgct acgggtaaag tgctttcctg aatatgtggg
     2821 atcattctgt tttgcatctt cctggccgga agcacccatg cgctattaca tgaaaaggtg
     2881 tgtagctctc tcaaccattc aacggctggg gaaggtagag gtatatcaat agggtctccg
     2941 tttttgctgc gttcttccgg caaatgccat accgcaccat ctaaatcaaa ctcttcccat
     3001 cgtgcggcgc ataattccat tttgcggacg cataacgcta acagtaattt gaacgtgatt
     3061 tcgttctggc gactgaatcc cttagccgtg cgcatggctt tgaatagctg gattaactca
     3121 tcgcgggtta accagcggtc acgggcagct tctttccctc cggcgtctgc cacctcaaag
     3181 gctgaacagg ggttaatctc tagcgcgtgc cgtttgattc cgtagtcgaa tatgcggcgc
     3241 gtccatctca gcacgtccgt tgctatggtc ggcgctccac ggtcaacaat acctttcagc
     3301 atgtcatcga tatggcgcgg tttcacgtcc tctaccttca tgctgccaat gcaggggttt
     3361 atatctttgt cgatacggcg gcggagtata tcggggtgct tccagcgcgg gaggatctga
     3421 cgctcaaagt attcagcggc aagctctgaa acgcgcatag cgttcttctc tgcttccatc
     3481 ttcgccagtg cttcggtttt gcgcttctgc ttctctcctg caacgtcata gcccagcgca
     3541 acgcgagccg atagctcttt ggctgtctct ctggcctttg atagtgatag ctcgctatac
     3601 gaaccaatta gcatggcgcg ggacttccct gcgagtttat agcggaatct ccatgtgggg
     3661 gttttgtcgg cttcacggta acgtaggtat aaaccgttac cgtctgcccg cccctcgaat
     3721 cgctctccgc tcttaatcca tgcgcggatc tgcatgtctg ttagttttgg cattttgcga
     3781 atatccaaac tttgaatagg gggtgtaccc aaagcaatgt acccaaacct cattgggtac
     3841 acctttgtgt acaccataat catgcgcttt gttgcgtctt tatgatagcc catgataaca
     3901 aaaaagcccg ctgggttgcg ggcttggtgt gatttatgcg ttgtcctaaa tgttgctgat
     3961 agcttactcg atattctgaa tctgctcgcg catctgctca atcaacactt tcagctcaat
     4021 cgcggagttt gtcacttcgg cattgataga cttcgacgca agagtgttcg actcgcggtt
     4081 gaattcctgc atcataaagt ccagacgacg accaacggct tcttttttct tcagaatgtt
     4141 gtaggtctct ttgacatgcg cttccaggcg gtccagttct tcggcaacgt caattcgttg
     4201 tgccagcaga accagctcct gctccagacg gttgttttcc aactgaacct gagcatcttc
     4261 cagcttcgcg accagacgct cacgctgcca ttgcaggatt tccggcatat gggcgcggac
     4321 tttgaccact tcggcggtga cgccttccag acgctgctcg atcaatgctt tcagtgcctg
     4381 accttcggtt tcgcgcgcga caataaagtc gtccagcgta ccatccagcg ccgcgagaat
     4441 ttcagcggca atggcgtcaa gatcctgctc ctgggctgcc atcacgcccg gccagcgtag
     4501 aatatcaacc gggttgattt ccccttcgtc actctgcatt tttacccagt tcgcggcagt
     4561 taccagctgt ttagccagtt tttcgttgag gatcagctca ccttgcgcgc taatatctgg
     4621 ctcatagcgc agggtacatt ccactttacc gcgcgtcagg cgagaacgaa tacgctcgcg
     4681 aacgacaggt tcaaggctac ggaactgctc cggcagacga aagtaagttt ccagataacg
     4741 ctggtttacc gagcgcattt cccaggttgc gctcccccat tcacccttga tttcacgccg
     4801 ggcgtaggcg gtcatactgc ggatcataga cgttcctgtt tataaaagga gaggtggaag
     4861 gattatagcc atcgatgcct tgtcaggata ggaataaccg ccggaagtcc gtataatgcg
     4921 cagccacatt tgtttcaagc cggagatttc aatatgcgtc cagcaggccg tagcaataat
     4981 caggtgcgtc ccgttaccct gactcgtaac tatacaaaac atgcagaagg ctcggtgctg
     5041 gtcgaatttg gcgataccaa agtgttgtgt accgcctcta ttgaagaagg cgtgccgcgc
     5101 ttcctgaaag gtcagggcca gggctggatc accgcagagt acggcatgct gccacgttct
     5161 acccacaccc gtaacgctcg tgaagcggcg aaaggtaagc agggtggacg cacaatggaa
     5221 atccagcgtc tgatcgcccg tgctcttcgc gcggcagtag atttgaaagc gctgggtgag
     5281 ttcaccatta cgctggactg cgacgtgctt caggctgatg gtggcacgcg taccgcgtcg
     5341 attacgggtg cctgcgtggc gctggcagat gcgctacaga agctggtgga aaacggcaag
     5401 ctgaaaacca acccgatgaa agggatggta gccgcagttt ctgtcggaat tgtgaacggc
     5461 gaagcggttt gcgatctgga atacgttgaa gactctgccg cagagaccga catgaacgta
     5521 gtgatgaccg aagacgggcg catcattgaa gtgcagggga cggcagaagg cgagccgttc
     5581 acccatgaag agctactcac cttgttggct ctggcccgag ggggaatcga atccattgta
     5641 gcgacgcaga aggcggcgct ggcaaactga tttttaaggc gactgatgag tcgccttttt
     5701 tttgtctgta gaaaagtaag atgaggagcg aaggcatgaa accatatcag cgccagttta
     5761 ttgaatttgc gcttggcaag caggtgttaa agtttggcga gtttacgttg aagtccgggc
     5821 gcaaaagccc ctatttcttc aacgccgggc tgtttaatac cgggcgcgat ctggcactgt
     5881 taggccgttt ttacgctgaa gcgttggtgg attccggcct tgagttcgat ctgctgtttg
     5941 gccctgctta caaagggatc ccgattgcca ccactaccgc cgtggcgctg gcggagcatc
     6001 atgaccttga cctgccgtac tgctttaacc gcaaagaggc aaaagaccac ggtgaaggcg
     6061 gcaatctggt tggtagcgcg ttacaaggac gcgtaatgct ggtagatgat gtgatcaccg
     6121 ccggaacggc gattcgcgaa tcgatggaga ttattcaggc taatggcgcg acgcttgctg
     6181 gcgtgttgat ttcgcttgat cgtcaggaac gggggcgcgg cgagatttcg gcgattcagg
     6241 aagttgagcg tgattacaac tgcaaagtga tctctatcat caccctgaaa gacctgattg
     6301 cttacctgga agagaagccg gaaatggcgg aacatctggc ggcggttaag gcctatcgcg
     6361 aagagtttgg cgtttaaaga aactcgccgg atgaaaagtc atccggcgtc atattactgc
     6421 aactgtgccg caattagcgg ccagcgggcg tcaaaatcat ccgtcgggcg gtatttaaat
     6481 tcgctgcgga caaaacgtga cagcatacct tcacagaagg ccaggatctg gcttgccagc
     6541 agggtttcat cggtggtgta accttcaccc tcacgcattc tcttttcacg caatacctga
     6601 cgcagctgcg cttcaatacg ctcgaacagc tggttgatgc gcccttgcag gcgatcctgt
     6661 tcaaacatta gcgcatgacc agtgaggatg cgggtcaggc caggattacg ctcaccaaaa
     6721 ccgagaagca gcaacacaat cagacgcagg cgcgctgtgg tgtctttctc atctttcaga
     6781 atcaggttga tgcgagtaat caggctatct tcgataaact caatcaggct atcgaacatg
     6841 cgggtcttac tggggaagtg gcgatacagt gccgcttcgg aaacgccgac agaggcggcc
     6901 agttttgccg tcgtgatacg ttggcttcca tcgctggatt ccagcatcag cgccagagac
     6961 tgaagtattt cctcgcgacg gttccttttc gcagtttgtt tttctgccat gttacaaaat
     7021 acccctgaaa ataagcacct gccaggcggc acccacgcta tgaccgcaaa cgaaatgttt
     7081 gcggctatgt tatgacgtta ttcggatgcg tatgtgttac tgacgaccag agtgaccaaa
     7141 gccgccttca ccgcggtcgg tggcgtcgaa atcttccacc agattaaatt cagcctgtac
     7201 taccggaaca aaaatcatct gggcgatgcg ttcgccaggt tgaatggtga agctgtcctg
     7261 accacggttc cacacggaaa tcatcaactg gccctgatag tcggaatcga tcaatcctac
     7321 caggttacca agcacgatac cgtgcttatg tcccaatccg gagcgcggca gcatcattgc
     7381 cgccagtgaa ggatcggcaa tatgaatcgc cagcccggtc ggaaccagcg tagtgtcacc
     7441 cggagccagt tctacggcgt cgtcgagaca ggcacgcagg tcaagtccgg cagagccaga
     7501 ggtggcataa gtcgggagcg gaaattcctt cccaacgcgc gggtccagaa tcttaacgtc
     7561 gatttttttc atcataacgg gtcacgatct cgtcgagtaa tagttggcca aggagctctt
     7621 tgcgctcaag cggtaagact ttatctccgt cctgccagaa aaggtgtaat gcgttgtttt
     7681 cgctgttaaa tccttgagtt ggctgggaaa catcgttcgc gcagatcaga tcaaggtttt
     7741 tacggatacg tttttgccgg gcgtattctt ccacattatt tgtttcggcg gcaaatccaa
     7801 cgacgtaggg tcgatggtct tttagtgcgg caacgcctgc gacgatatcg gggtttttaa
     7861 ccatttttat tgttaattca tcaccctgcg tggcctgctt tttgattttt tctggggcca
     7921 cggtagctgc gcgataatcc gccacggcgg cgcagccgat aaaaatattt tgctgctgta
     7981 cagaagcatt cacggcggct tccatttcca gcgcggtcat cacatcaaca cgtttaacaa
     8041 acggtggcgt cggtagtgaa accggacctg ataccagcgt gacgttcgcg ccacgacggg
     8101 cagcggcggc ggcgatagca aaacccatct tgccggagct gtgattagag atataacgca
     8161 cgggatcgag cggttcacgc gtcggaccgg cggtaatcat aatgttcaga tgtttcaggt
     8221 cgttgacggg cgaaaaatgc gccaccgcca tatccacaat ggttaacgga tcgagcattc
     8281 gcccaggacc gatatcacca caagcctgac tgccactgtc tggcccccag atgagcaaac
     8341 cacgggaagc aagcccctct aaattatgct gcgtggcagc ggcacggtac atctgctggt
     8401 tcatggcggg gagcacggct acaggcgcag gtgtagccag acaaatcgtc gataccaggt
     8461 cattcgccat tccggcagca acacgggcaa tcaaatctgc cgtggcaggg gcgagaatca
     8521 ctaaatcagc ccatttaccc agctcaatat ggcccatagc ggcttcggct gccgggtcca
     8581 gcaaactgtc ggaaacggga taaccagaaa ccgcctgcaa gctaagtggg gtgataaagg
     8641 cttttgccgc ttcggtcatg gctacgcgga cgtcggcccc gcgatcgcgc aaacgacgca
     8701 ccagttcagg ggttttatag gcagcaatac cgccgctaac gccgagaacg atttttttac
     8761 cggccaggct catgatgatt tttcctgttg ggtgacacca gaagttggcg attttatcac
     8821 aatacttttg ttgtcgtgcc ttcacctgag aatcactttg cgaggcgctt tccaggattg
     8881 aaaactggcc gtcgatttaa cggaacggct atgacaggat gcgagcacca caaaggaggt
     8941 gaaggtgaaa aacaattcac agctgttgat gccgcgcgaa aaaatgctga agtttggtat
     9001 tagcgcctta acggatgtcg agctgctggc gctatttctg cgtaccggaa cgcgcggtaa
     9061 agatgtatta accctggcaa aagagatgct ggagaatttc ggctctcttt atggcttgtt
     9121 aacctctgaa tatgaacaat ttagtggcgt tcatggaatt ggcgtggcga aatttgccca
     9181 gttaaagggg attgctgaac tggcgcggcg ttactacaac gtgcggatgc gtgaagaaag
     9241 ccctttactc agcccggaga tgacgcggga atttttacaa agccagctta cgggtgagga
     9301 gcgggagatc tttatggtga tctttctcga ctcacaacac cgggttataa cgcatagccg
     9361 tcttttttcc ggcacgctaa accatgttga agtccatcct cgggaaatta tccgcgaagc
     9421 gataaaaata aacgcctcgg cgctgatcct tgcacataat cacccttcgg gttgtgctga
     9481 acccagtaaa gcggataaac tcattactga acggataata aagagttgtc agttcatgga
     9541 tttacgcgtg ctcgaccata tcgtgattgg gcgtggagag tatgtttctt ttgccgaacg
     9601 cggctggatt taacccgcta tgcgcgatcc ttcgggatct ttgtctgttc gggacttgag
     9661 cacatcgctg agtcagcgta tactacgcca cctttgagaa tctcgggttt ggcatttggg
     9721 cctggcaatc gagagttcac atagaactgc gatgactggg ctgtaaagcc tgacgaggcg
     9781 ccaatacccc atacgaagct cgagctaatt tgatttttgg agaatagaca tgtcccgagt
     9841 ctgccaagtt actggcaagc gtccggtgac cggtaacaac cgttcccacg cactgaacgc
     9901 gactaaacgc cgtttcctgc cgaacctgca ctctcaccgt ttctgggttg agagcgagaa
     9961 gcgttttgtc accctgcgcg tatctgctaa aggtatgcgt gtaatcgata aaaaaggcat
    10021 cgatacagtt ctggctgaac tgcgtgcccg tagcgaaaag tactaagtac ttagaggaaa
    10081 taaatcatgg ctaaaggtat tcgtgagaaa atcaagctgg tttcttctgc tggtactggt
    10141 cacttctata ccactacgaa gaacaaacgt actaagccgg aaaaactgga actgaaaaaa
    10201 ttcgatccag ttgttcgcca gcacgtgatc tacaaagaag cgaaaatcaa ataattctcg
    10261 ctttgatgta acaaaaaacc tcgctccggc ggggtttttt gttatctgct tgcccccata
    10321 ttgactgcat ctgttcattc ctggagatgc tatgcctgaa ttacccgaag ttgaaaccag
    10381 ccgccgcggc atagaaccgc atctcgttgg tgcaaccatt cttcatgcag tggtgcgcaa
    10441 cggacgcttg cgctggccgg tttcagaaga gatctaccgt ttaagcgacc aaccagtgct
    10501 tagcgtgcag cggcgggcta aatatctgct gctggagctg cctgagggct ggattatcat
    10561 tcatttaggg atgtctggca gcctgcgcat ccttccagaa gaacttcccc ctgaaaagca
    10621 tgaccatgtg gatttggtga tgagcaacgg caaagtgctg cgctacaccg atccgcgccg
    10681 ctttggtgcc tggctgtgga ccaaagagct ggaagggcat aatgtgctgg cccatcttgg
    10741 accggagccg cttagcgacg atttcaatgg tgagtatctg catcagaagt gcgcgaagaa
    10801 aaaaacggcg attaaaccgt ggctgatgga taacaagctg gtggtagggg tagggaatat
    10861 ctatgccagc gaatcactgt ttgcggcggg gatccatccg gatcggctgg cgtcatcact
    10921 gtcgctggca gagtgtgaat tgttagctcg ggtgattaaa gcggtgttgc tgcgttcgat
    10981 tgagcagggt ggtacaacgc tgaaagattt tctgcaaagt gatggtaaac cgggctattt
    11041 cgctcaggaa ttgcaggttt acgggcgaaa aggtgagccg tgtcgggtgt gcggtacgcc
    11101 gattgtggcg actaaacatg cgcagcgggc aacgttttat tgtcggcagt gccagaagta
    11161 attcatgcgc gccggatcgc ataccatccg gcataaacgc tacgctaact tcgccatcag
    11221 cgcctgatgg acattctccg gcaggaaatg ggtgacatcg ccctgatggc gcgccacctc
    11281 tttcaccaac gatgaagaga taaacgacca ctctttcgac ggcatcagaa acacactttc
    11341 cagttccggc attaagtggc gattcatatg cgccagctgc atttcatatt caaaatccgc
    11401 caccgcacgc aggccacgaa tcagcaccgt agcgtgttga ttacgggcga agttcgccat
    11461 caaatcacta aacccaacta cttccacgtt ccccagatgc gcggttgcct gctgtgccag
    11521 cgccacacgc tcttccaggg taaacatcgg ttttttactg gggctggcgg caatcgccag
    11581 aataacgtga tcgaacattt gcgtggcgcg cgtcacgata tcgatatgac cattggtaat
    11641 gggatcgaaa gtacccggat aaatcgcccg tttttgcata acaacctcaa tgcgttttcg
    11701 gtggcaggta aggttccagc agttgaagca ggcgctgtag cgcgccctgg ttttgataca
    11761 gtacttcaac ggcatgacgg ccatagaaac tacggtaatc ggcgtcggtg agtaaagagg
    11821 aaacctcttt tgcaagcgta gtggcatcgg taacggtaat cagcccgctt gcctgctcca
    11881 gccgcgcgca aatgtcttta aaattaaaag tatgcggccc catcaatacc ggaatagcgt
    11941 gtgcggcagc ttccagcgga ttatgcccac cacgttcaac cagtgaaccg ccaacaaagg
    12001 cgagatcggc aatgccgtac agtaacatca actcgcccat cgtatcgcca accacaacct
    12061 gcgtgctggt ggaggggact tcccctgaag agcgtgtgat atagcttagt ccagcctggc
    12121 ggacaaggtt aatcgcatcc gggaagcgtt ctggatgacg gggtaccagg atgagcaata
    12181 aattcgggaa ttgctgtaac aatacctgat gtgcggcgat caccacactc tcttcacctt
    12241 cgtgagtgct ggtggcaatc cataccgggc ggtgtggtgc ccactggcgg cgcagcgtca
    12301 cggctttagc agccaactgc ggcgttacag aaatatcgaa tttcaggcta ccggtaacgg
    12361 ttacctggtt attttttgcg cccagcgcca caaaacgtgc accatcttct tcattttggg
    12421 cggcaatcag cgtaatacga cgcagcaagc gacggacgaa tttacccagt ttggcataac
    12481 ctgcggccga gcgggcagag agtcgcgcgt tcgcgatcac cagcggaatt ttacgtttat
    12541 gtagcgccgc aatcaggtta ggccatagtt cggtttccat aatcaacacc agtttagggt
    12601 cgactttatt caggaaacga ttaagtgcat cgggcaggtc atacggcaga taaacgtgct
    12661 gaacatcctt cccgaaagcc gattgtacgc gctccgaacc ggttggcgtc atggttgtaa
    12721 cggtaatcgg taaatcagga taacgatgac gcagcgcgcg caccaacggg atcgccgcca
    12781 gagtttcacc gacggagacg gagtgcagca taatgccgcc tggttttagc ggatggcggt
    12841 aaaaaccgta acgttcaccc cagcgttttc gataggccgg agccttacgt ccgcgcaccc
    12901 agagccgtat ccagatcagc ggctgaataa ggtagagaag ggcggtgtaa agcaattcga
    12961 gcatagtaaa tagctgactt atggatgtgc tggggattct atgtatttag ctgtggcttt
    13021 accattactt ttcccgtttt tgacttaaat agcaatttac ccgccaattc ttgctgaaca
    13081 tctatacttt ttttgtattt ttatgcgatt cattgatttc tgctgtacgt gcaggaagga
    13141 atcgcagagc aacagtgaaa gaatatggtt gctaatgatt ttatttgatt gatttcttta
    13201 ttgaaaatca acaatgtgct taaaaatcat tcgggtcgga ttgccgcgaa agaagtgata
    13261 cactagcgcg tcaatatcag tgcggtatca gtattcaggt agctgttgag cctggggcgg
    13321 tagcgtgctt tttctgcttc accttaatcg gataatctca acaaaaagag ttacttgtgg
    13381 ataagctatt tcgaagaatt ttgctcatta agatgcgttt tcatggggat atgttattaa
    13441 ctactcccgt cattagttcg ctgaaaaaaa attaccctga cgcaaaaatc gatgtgctgc
    13501 tttatcagga caccatcccg atcctgtctg aaaatccaga gattaacgcg ctctacggca
    13561 taaaaaataa aaaagcaaaa gcctcagaaa aaattgccaa cttttttcat ctcatcaagg
    13621 tattacgtgc caataagtat gaccttatcg tcaatctcac cgatcaatgg atggttgcta
    13681 tactggttcg cttattaaat gcccgtgtga aaatttccca ggattatcat catcggcagt
    13741 ctgctttttg gcgtaaaagt ttcacccatt tggtgccgtt gcagggtgga aatgtggtgg
    13801 aaagtaactt atccgtgctg accccattgc gagttgattc gttggtgaag cagacaacca
    13861 tgagttaccc gcctgcaagc tggaaacgta tgcgtcgcga acttgatcat gctggtgttg
    13921 gacaaaatta tgtggttatc caacctacgg cgcggcaaat cttcaaatgc tgggacaacg
    13981 ccaagttttc cgctgtgatt gatgccttac atgctcgtgg ttatgaagtt gttctgacgt
    14041 ccggcccaga taaagacgat ctggcctgcg tcaatgaaat tgcgcaggga tgccagacgc
    14101 caccagtaac ggcgctggct ggaaaggtga ccttcccgga acttggtgcg ttaatcgatc
    14161 atgcgcagct gtttattggc gttgattccg caccggcgca tattgccgct gcagttaata
    14221 cgccgctgat atcgctgttt ggtgcgacag accatatttt ctggcgtccc tggtcaaata
    14281 acatgattca attctgggcg ggagattacc gggaaatgcc aacgcgcgat cagcgtgacc
    14341 gaaatgagat gtatctttcg gttattccgg cggcagatgt cattgctgct gtcgataaat
    14401 tactgccctc ctccacgaca ggtacgtcgt tatgatcgtt gctttttgtt tatataaata
    14461 ttttcccttt ggcggtttgc agcgcgattt tatgcgtatt gctcagacag tcgccgcccg
    14521 aggtcatcat gttcgggttt atacccagtc gtgggaaggc gaataccctg atgtatttga
    14581 actgatcaaa gtgccggtta aatcgcatac caatcacggg cgcaatgcgg agtattttgc
    14641 ctgggtgcaa aaacatttac gcgaacatcc cgtcgataaa gtcgttggat tcaacaaaat
    14701 gccggggctg gacgtttatt atgccgctga tgtttgttat gccgagaaag tcgcgcagga
    14761 aaaaggcttt ttctatcacc tgacgtcacg ttatcgccat tatgccgcct ttgagcgggc
    14821 aaccttcgaa cagggcaagc cgacacagct gctgatgctg acagataagc aaatcgccga
    14881 tttccagaaa cattatcaga ctgaagcgga gcgttttcat attctgccac cggggattta
    14941 tcctgatcgt aaatatagcc agcagccagc taatagccgt gaaatcttcc gtaagaagaa
    15001 tggaataacc gaacaacaat atttattgtt gcaggtcggt tcagacttca cgcgtaaagg
    15061 tgtcgatcgt tccattgaag cacttgcttc gttaccggat tcgctgcgcc acaacacatt
    15121 gctatatgtt gttggacagg ataaaccgcg aaaatttgag gcgctggcag aaaaacgcgg
    15181 cgtgcgcagt aatgttcact tcttctcggg gcgcaacgat gtctcggaat taatggcggc
    15241 ggcggattta ttactgcatc ctgcctacca ggaagcagcg ggaattgtgc tactggaagc
    15301 gattactgca ggattaccgg tactaacaac agccgtttgt ggctatgcgc attatattgt
    15361 cgacgccaat tgcggcgagg ctattgctga gccattccgc caggaaacat tgaatgagat
    15421 tttacgcaaa gcgttaacgc aatcttcatt gcgccaggcc tgggcggaaa atgcgcgaca
    15481 ttatgctgat acacaagatt tatacagtct gccagagaaa gcggcggata tcataacggg
    15541 tggtctggat ggttgaactt aaagagccgt ttgccacgtt atggcgcggt aaagatcctt
    15601 ttgaggaagt taaaaccttg cagggtgagg tttttcgtga actggaaact cgccgcactc
    15661 tgcgatttga aatggcgggc aaaagctatt ttctcaaatg gcatcgcggc acgaccctga
    15721 aagagataat caaaaattta ctctcattgc ggatgccagt attaggcgca gaccgcgaat
    15781 ggagtgcgat tcatcgactg cgggatgtcg gcgttgatac tatgtatggg gtggcatttg
    15841 gcgaaaaagg tattaatccg ctgagcagaa cctcgtttat tattaccgaa gatctgaccc
    15901 caaccatcag tctggaagat tactgtgctg actgggcgac caacccacca gatgttcgcg
    15961 taaagcgtat gcttattaag cgtgtcgcga cgatggtgcg cgatatgcat gctgcgggca
    16021 ttaaccaccg tgactgttat atctgtcatt tcctgctgca cttgcctttt tccggtaagg
    16081 aagaggagtt aaaaatttcg gtaattgacc tacaccgggc gcagcttcgc acgcgcgttc
    16141 cacgtcgttg gcgcgataaa gatcttatag ggctttattt ttcttcaatg aatattggcc
    16201 tgactcagcg ggatatctgg cggtttatga aagtgtattt tgccaccccg cttaaagaca
    16261 ttctcaagca ggaacaagga ctgctgtcgc aagcagaagc aaaagccaca aaaatcaggg
    16321 aaagaacgat tcgaaaatcg ttgtaatttc cggagagaaa tatgagtgcc cactatttta
    16381 atccacaaga gatgatcaat aagacaatca tcttcgatga aaggccagcg gcgtcagtgg
    16441 catcatcatt ccatgttgct tatggcattg ataaaaactt tctttttggt tgtggtgttt
    16501 caatcacgtc agttttgtta cataacaacg acgtgagttt tgttttccac gtttttattg
    16561 atgatatccc tgaagccgat atccagcgtt tagcccaatt ggcgaaaagc tatcgtacct
    16621 gtatccagat ccatctagta aattgtgaac ggcttaaggc attaccgacg accaaaaatt
    16681 ggtctattgc catgtatttc cgttttgtaa ttgcagatta ctttattgat caacaagata
    16741 agatccttta cctggatgct gatatcgcct gtcagggaaa cttaaagccg ctgataacaa
    16801 tggatcttgc caataacgtt gctgctgttg ttactgaacg cgatgctaac tggtggtcgt
    16861 tacggggtca aagtctgcag tgtaatgaac ttgaaaaggg ctactttaat tcaggtgtcc
    16921 tgttaattaa tacactagcg tgggcgcagg agtccgtttc tgctaaagcg atgtcgatgc
    16981 ttgctgataa agccatcgtt tcccgtttca cctatatgga tcaagatatc cttaatctta
    17041 tcctgttagg gaaagttaaa ttcattgatg ctaaatacaa tacgcaattt agtttaaatt
    17101 atgaattaaa aaaatcattt gtttgtccaa ttaatgatga aaccgtatta attcattatg
    17161 tcggcccgac aaaaccctgg cattactggg ccggttatcc aagtgcgcaa ccttttatca
    17221 aagccaaaga agcatcgccc tggaaaaatg aaccgttaat gcggccagtt aactcaaact
    17281 atgctcgtta ttgcgccaag cataatttta aacaaaataa accaattaac gggataatga
    17341 attatattta ttatttttat ttaaagataa taaaatgaaa ttgagaaaag ttaaatgaat
    17401 gaatttataa aagaacggtt ttcgtattta gcagataata aaaaagaaaa cgccccagag
    17461 ctaaatgttt cctacggtat cgataagaat tttttgtatg gtgctggcgt ttcaatttct
    17521 tccgttttga ttaataattc agatattaat tttgtctttc atgttttcac tgattatgtg
    17581 gatgatgatt atttaaagtc atttaatgaa acagcaaaac aatttaatac ctcaattatt
    17641 gtatatttaa ttgaccccaa atactttgct gatctgccga cgtcacagtt ttggtcatac
    17701 gcgacatact tcagggtatt gtcttttgaa tatctgagtg aaagtatttc cacactgctg
    17761 tatctggatg ccgatgttgt ttgtaaagga agcctgaaac ctctcacaga aattatattt
    17821 aaagatgagt ttgctgcggt cattcctgac aatgatagta ctcaggcggc atgtgcaaaa
    17881 cgcctcaaca ttcccgaaat gaatggacgt tatttcaatg caggcgttat ctatgtcaat
    17941 cttaaaaaat ggcatgaagc aaatttgaca ccgtatttac tcaaactttt acgaggggaa
    18001 actaaatatg gctctcttaa atatttagat caggatgcgt tgaatatcgc atttaatatg
    18061 aataatatct accttgcgaa ggattttgat actatttata ccctgaaaaa cgaactttat
    18121 gatcgtagtc atcgaaagta tcagcaaacc attaccgata aaacagtgtt gattcactat
    18181 acagggataa ctaaaccatg gcatagctgg gctggatatc cgtctgcatc atactttaat
    18241 atcgcgcgtg aacaatctcc ctggaagaaa tatcctctta aagaggcgcg gactgttgca
    18301 gaaatgcaga aacaatataa gcatctgttt gcccatggtg agtatataaa aggcataact
    18361 tcattaatta agtacaagct taagaaataa attactctta tgattacaag tatacgttat
    18421 cgcggcttct cattttatta caaagataat gataataaat ataaagaaat ctttgatgaa
    18481 atactggcct ataattttaa aacagtaaaa gtattatgta atattgatga taccaaagta
    18541 tcgttgattg atacgaaata tggtcgctat gtttttaaag tctttgctcc gaaaacgaaa
    18601 aggaatgaac gttttttaaa atcttttgta aaaggtgact actatcagaa tttgatcgtt
    18661 gaaaccgatc gtgtcagaag tgcaggtctt acttttccta atgattttta ttttctggct
    18721 gagcgtaaaa ttttcaacta tgccagtgtt tttatcatgc ttatcgagta tgtcgagggc
    18781 gtagagctca atgatatgcc gattattcca gaaaatgtta aagcagaaat taaggcttcg
    18841 atggaaaaat tgcatgcctt aaatatgcta tcgggcgacc cacaccgggg taactttatc
    18901 gttagtaaag atggtgtcag gataattgac ctatccggta aaagctgtac ggcagagcgt
    18961 aaagctcgtg atcgtctggc catggaacgt cacctgggta ttgccaacga aataaaagat
    19021 tatggctact attcagtaat ctacagaacc aaactacgca aatttattaa aaaattaaaa
    19081 ggcaaagcgt aaaccacaca gtcaaaacgg aaccaacatg gatttattag cagagagtat
    19141 tactgaagtc gctgtctctg gggaaattgc taacaccgat cgtgtgttaa atatcgctta
    19201 cggtattgac cgtaactttt tatttggtgc ggcagtatct atgcaatcag ttgttatgca
    19261 taacccggac cttgcggtta agtttcatct ctttaccgac tacattgatg aagattatct
    19321 acaacgtgtt aatgctttta ccagcaaaaa tgctaacgtt gaagtaataa tttataaagt
    19381 ctccaatgcc tttattgata tcttccccag cctgaaacag tggtcttatg caacattctt
    19441 ccgtttagtt gcgttccagt atttgagtga aactattgaa aatctgttat atatcgatgc
    19501 tgatgtcatc tgtaaaggct cattagctgg attgcttgat attaattttg atgaggataa
    19561 gttcgcagct gttattaaag atgtgccttt tatgcaggaa aaaccagcga agcgtctggc
    19621 tatagaggga cttccaggga attatttcaa cgccggtgta gtatatctgc agcttgaagc
    19681 atgggcgaaa aatgatttta tgaataaagc cattgctatg ctggcaagtg acccgcagca
    19741 cacgaagtat aaatgccttg atcaggatat tttaaatatt ctgttctttg gtcattgtaa
    19801 ttttattagc ggcgattatg attgctttta tggcattgac tatgagttaa aaaataaaag
    19861 cgatgaagat tataaaaaga ccattaccga tgatactaag ctgattcatt atgttggcgt
    19921 aacgaagccc tggaacgact ggacgaatta tccctgccag aagtatttta atgaggctta
    19981 tcaggcttct tgctggaatg atgtggcgtt tattccagcc acgaatgaaa agcagtatca
    20041 agtgaaatat caacatgcaa agaaaaatgg tgatacgttt aacgctttta tttacttcat
    20101 taaatttaaa ttaaataagt ataaaagaaa actatttgga taataataaa aatcatggat
    20161 gtctgagtta caataataat taaggatgag tactatcata ttttattagt tcaggcaaga
    20221 gaacacgatg agcaatgatt accctttagt atctataata ataccgacgt ataattcatc
    20281 tgattacatt actgaaactc taacgaaatt agaaaaacaa acttacccaa attttgaaat
    20341 tgttattgtt aatgatggtt ctaaagataa cacatcaaac gttttgagag agtatgggtt
    20401 aacccactct cgattaatta ttgtcaataa agaaaatggc ggtgtttcgt ctgccaggaa
    20461 tacaggtatc cgcaaggcgc aaggacagtt tatatgtttt atggatgatg atgatgagat
    20521 agatcctaac tatctgctga agatgtatac cagacaacat gagacgggag gggatgcgat
    20581 ttattgtggg ctttatggcc attatataaa agatggtgtt acttactcac ctataaatac
    20641 agagtttaat gaaggatctt tacttttcga ctttttttat aaaaaggtta gattccatat
    20701 agggtgcttg tttataagaa aacaacttct ggaagagaat aatctttttt ttgatgaaga
    20761 tttacgacta ggagaagatc ttgattttat ctatcgactg ctaattacat gcgatatgta
    20821 tgcggttcca tattatatgt ataagcataa ctatagagaa aattccttaa tgaactcatg
    20881 tagaaccatc actcattatc gacatgagtc atttgcgcac gaaagaatct actcttctgt
    20941 gatgcagtta tacaaaggta accggaaaga agaaattcat acattattga gtcaaaatag
    21001 agcttatcat aaaactcgtt atttatggaa tgttctactt aatggtgatt ttaaactatt
    21061 gaatcaatta gttgaaagca atgaaaaaga attaagatat tgtaatcttc ctggcaagag
    21121 agataagaga cgagcaaaaa tattagcatc aaaaaattat attctctgga ggatggtaag
    21181 actggtaaat agaaaaaaga ataaacgtta gatcttgcat taaataaccc atcctcgtag
    21241 cataggttga aattatatgt cgttttgttg gaatgaaatt aattctggta taaagtcttt
    21301 aattcttata ttatgtattt tttctttaat gactttgtct ttatgggatg atgttgcaac
    21361 aaagtttctt catgcagctg gaattatatc tgcattgtat tttcttgcga caccaaaaaa
    21421 aacaataact aataatccta ctttgttaat tttcatctca ttatgtcttt tgggtatcgt
    21481 aaatatcatc tggtattcac attataaagt ttcaggctct gtttatacca atgcatatcg
    21541 tggcccaatg gaaactggaa aaattgcctt gtgtagcgct tttattttct tagttctttt
    21601 tgctaaaaat gagatgagaa caaaaataaa atttgggaaa ctaattctgt tcgcatccct
    21661 ggcaacgcag ttactttttt ttgcgcatgc catgtggcaa catttctatt taaacgtcga
    21721 ccgtgttgca ttatcagctt cccacgctac aacagcaggc tacatcatcc tttttccttc
    21781 tttactggca tcaattctca ttttaaaatc cgactttaga cataaaacaa cattatatac
    21841 aattaacttc atgcttagct tatgtgctgt catagtaact gagacgcgtg cagccatatt
    21901 agtgtttcca ttctttgcgt taatattaat cgtaatggat agttatatta ataagcgaat
    21961 taattataag ttatattgtt ttattgcgat tgcattatta gcaggtgtat tttcttttaa
    22021 agatacattg cttatgagaa tgaatgactt aaataacgat ttagttaatt attcgcatga
    22081 taacaccaga acttcagtcg gtgcccgtct ggcaatgtat gaagttggct taaaaacata
    22141 ttctccaata ggacaatcac tggaaaaacg tgcagaaaaa atacatgagc tagaagaaaa
    22201 agagcctaga ttgagtggcg ctttaccttt tgtagattct catttgcata acgatctcat
    22261 agatacgtta tcaacgcgtg gtattcctgg agttgtatta acaattttag cattttcagc
    22321 aatactcata tatgccttaa gaactgctaa agaaccttat attttaatct tgcttttttc
    22381 actactggta gtaggcctaa gtgatgtaat actcttttct aaaccggttc cgactgctgt
    22441 gtttgtcacc ataatattgc tttgtgctta ttttaaagca caatcagacc aatatttatt
    22501 agataagtaa tgaatatatg aaataaaatc agcaaggagg ctgattttat ttcaaaatta
    22561 tctattaagg ggttgtaatt taaatcatag cagcgttttc agcgttttct tcaatgaatc
    22621 gcttaacagc atttgctgtc aattgagaca actcattccc cggagcccta caaaccattt
    22681 gattcttccc atacccacca attaatcccg gatcggttgg tccataaacc gtgatattgg
    22741 gtctatccag tgccgccgtt aaatggctta accccgtatc caccgacact acaaatttag
    22801 ccccggccag cacgcgggca acgccttcca gactcatctt cggcaatact tcaacataat
    22861 caaatccttc cgccagtcgt ttcgcccgtt cttcctcatg cggcgcgccc cacggaagtt
    22921 taatccgtat tcctgaatca gccagtaaac caatcaattc tcgccagtgt tcttccggcc
    22981 agtgtttatc atcacgggtc gtcgcatgaa gaaatacggc atattcgcca gcatctgtag
    23041 gcaggttcgt cagaaaatgc tgtgcgatag cataatcgcc ctgggtttgc ggtttgctat
    23101 agcccaaact tttggcaaac agttcgcggg tgcgttctac ggcgtgctgc tgttttgcaa
    23161 tatgatgctt acaattgtaa aacaggctgg ctaaaggttc gcgagcggtt tgccagtcca
    23221 atccatgctt tacgccatgc gccagacgtg tcaccagtgc cgcgcttttt accagcccct
    23281 gagcgtcgat aactgcgtca tagttctctg cttgtagcgc ttcacgaaac gctttgcgtt
    23341 cagcttttat gggggccgag aaccaggctt tacgccagcg acgtattgcc acaggaataa
    23401 ctcgctcaac ggcagcgtgc caggaaggaa tctgtgcgaa cccttcttcc accacccagt
    23461 caaacttaat ccctgggatt gcctgctggg catcagtgag tgcgggcaac gtatggagaa
    23521 catcgcccat cgacgatgtt ttaacgatca aaacccgcat ccgtcaggct tcctcttgta
    23581 acaatagcgt gttgagttct tccagtacgc gctggggagt aatgtcgatc aagctctggt
    23641 gataaccctc cgcagcgtca cctttacgca ctttgtgata gccggtaatc agacggatca
    23701 cgcgcgcttt atgggatagc ggcggtgtga agtccgggct acttggacca tacagggcaa
    23761 ccagcggacg attgagcgcc gccgcaacgt gcatcaggcc agaatcgtta gtgacaatgg
    23821 ctttacaggc tgcaatcagg ataaccgctt gatcaagctg tgtttccccc gccaggttcc
    23881 gacaccatgc ctgctgctcg gtattcaaag cggcaagaat ctcattgccc gcttcatgat
    23941 ctttcgcaga gccaaacaga accacctgat aaccttcatc aatcagctgc tttgccagtt
    24001 ccgcatagtg gtagtgtggc cagcgttttg ccggaccaaa ctccgcaccc gggcaaaagc
    24061 caatcatcgg acgttctgat gaaagcgaaa attgattaca ggtatatgat ttttcacctt
    24121 cgctcacctg caactgcggc cataacaatg gctgcggcag atcttgtgcg gtacgcataa
    24181 tgcctttgtc ataggccagc gcgacatagc gttccaccat tagcggccag gcttctttat
    24241 cgagcacgcg tacatcgttg agtaaaccgt agcgcatctc gccgcgccag ccggtgcgat
    24301 gaggaatacc cgcgaagaaa ggcactaatg cagatttgaa ggagttgggt aagacgtagg
    24361 cgcggtcgta gcgcttttca cgcaggctat gacccagttt gcggcgttcg ccgatttcca
    24421 gcgctccgtg accgagaggc atagggatag cttcgttaac ttccggcatc cgcgataata
    24481 atggacggca ccatgccggt gccatcacat cgattatcgc ctggggatag cgcgcctgga
    24541 gcgtgcgata gagactttgc gacatcatca tgtcgccaac ccaagacggg ccgatcacca
    24601 gtattttcat gcagagctct tatgcgtcgc gattcagcca ggccatgtat tccgttacac
    24661 cttcagcaac ggttttgaac ggtttgtcgt aacccgccgc gcgcagattt gtcagatctg
    24721 cctgagtgaa cgcctggtag cggcctttca gcttatccgg gaacggaatg tattcgatct
    24781 ggcctttctt gtgataagcc agagtagcat ctgctacggc ctggaaggat tccgcacgac
    24841 cagtaccgag gttgaagata ccggaaacgc cattttccag gaaccacagg tttacatctg
    24901 ccacgtcgcc cacatagacg aagtcacgtt tgaagttctc gctaccttca aacagcttcg
    24961 gtgattcacc gttgttaagc tgagtgttga gatggaaagc gacgctcgcc atgctgcctt
    25021 tatggccttc acgcggtcca taaacgttga aatagcggaa gccaacaatc tgcgagttcg
    25081 cttcaggcag gatttggcga acatattcat caaacaggaa ttttgagtaa ccgtagacgt
    25141 tcaacggttt ttcgtactcg cgggattcaa taaagtcgga ggtgcgtccg ccgtaggtgg
    25201 ctgcggaaga agcgtacagg aacgggattt cgcgctccag gcagtagtgc agcagctcct
    25261 tggagtattg atagttgtta tccatcatat acttgccgtc ccactcggtg gtggaagagc
    25321 atgcgccttc gtggaaaatc gcttcgacat cgccgaactc ttcgccagcc ataatctgga
    25381 tcaggaagtc ttccttatcc atatagtccg cgatatccag atccaccagg ttcacaaact
    25441 tggtgccgtc tttcaggttg tccaccacca gaatatcggt gatgccttta tcattcaggg
    25501 ccttaacgat gttgctgccg ataaagcccg cgccgccggt aacgatgatc ataactgtaa
    25561 ccttcgaatt atggagtcag agacaatctc agacacgaat acttctatca tatcactata
    25621 cggcgttggc ttcagccatt cgccaaaagt gagattgatg gacgttattt atcctgaatt
    25681 ttgcagaagt gttaacgcgt catctcgtcg cgacgtataa gtttgggtaa tatgtgctgg
    25741 aatttgccct gtctggagaa tcgcaatgcg tggagaattt tatcagcagt taaccaacga
    25801 tctggaaacc gcacgggcgg aagggttgtt taaagaagag cgcattatta cgtctgcgca
    25861 gcaagcagat atcactgtgg ctgatggaag ccacgtcatt aacttttgtg ccaacaacta
    25921 tctcgggctg gcgaatcatc cggatctgat tgcggcagca aaggcgggaa tggattctca
    25981 cggtttcggc atggcttcgg tgcgttttat ttgcggcact caggacagcc ataaagagct
    26041 tgaacaaaaa ctggcggcat tcctggggat ggaagatgcg attctctact cttcctgctt
    26101 tgatgctaac ggtggactgt ttgaaacgct gctgggtgcg gaagacgcca ttatctccga
    26161 cgcactgaac cacgcgtcta ttattgatgg tgtgcgtctg tgcaaagcta aacgctatcg
    26221 ctatgccaac aacgatatgc aggagctgga agcacgtctg aaagaagcgc gtgaagccgg
    26281 tgcgcgtcat gtgctgattg ccaccgatgg tgtgttctca atggacggcg tgattgccaa
    26341 cctgaaaggc gtttgcgatc tggcagataa atacgatgcc ttggtgatgg tggatgactc
    26401 ccacgcggtc ggttttgtcg gtgaaaatgg tcgtggttcc catgaatact gcgatgtgat
    26461 gggccgggtc gatattatca ccggtacgct tggtaaagcg ctgggcgggg cttctggtgg
    26521 ttataccgcg gcgcgcaaag aggtggttga gtggctgcgc cagcgttctc gtccgtacct
    26581 gttctccaac tcgctggcac cggccattgt tgccgcgtcc atcaaagtac tggagatggt
    26641 cgaagcgggc agcgaactgc gtgaccgtct gtgggcgaac gcgcgtcagt tccgtgagca
    26701 aatgtcggcg gcgggcttta ccctggcggg agccgatcac gccattattc cggtcatgct
    26761 tggtgatgcg gtagtggcgc agaaatttgc ccgagagctg caaaaagagg gcatttacgt
    26821 caccggtttc ttctatccgg tcgttccgaa aggtcaggcg cgtattcgta cccagatgtc
    26881 tgcggcgcat acccctgagc aaattacgcg tgcagtagaa gcattcacgc gtattggtaa
    26941 acaactgggc gttatcgcct gaggatgtga gatgaaagcg ttatccaaac tgaaagcgga
    27001 agagggcatc tggatgaccg acgtccctgt accggaactc gggcataacg atctgctgat
    27061 taaaatccgt aaaacagcca tctgcgggac tgacgttcac atctataact gggatgagtg
    27121 gtcgcaaaaa accatcccgg tgccgatggt cgtaggccat gaatatgtcg gtgaagtggt
    27181 aggtattggt caggaagtga aaggcttcaa aatcggcgat cgcgtttctg gcgaaggcca
    27241 tatcacctgc ggtcactgtc gcaactgtcg tggcggtcgt acccatctgt gccgcaacac
    27301 gatcggcgtc ggcgttaacc gtccgggctg cttcgccgaa tatctggtga tcccggcgtt
    27361 caacgccttc aaaatcccag acaatatctc cgacgacctg gcttccattt ttgatccctt
    27421 cggtaacgcc gtgcataccg cgctgtcgtt cgatctggtt ggcgaggatg tgctggtctc
    27481 tggtgcaggt ccgataggta ttatggctgc ggcggtggcg aaacacgttg gtgcacgcaa
    27541 tgtggtgatc actgatgtta acgaataccg ccttgagctg gcgcgcaaaa tgggtatcac
    27601 ccgtgcggtt aacgtcgcga aagaaaacct taatgatgtg atggctgaac tgggcatgac
    27661 cgaaggcttt gatgtcggtc tggaaatgtc cggtgcgccg ccagcgtttc gtaccatgct
    27721 tgacaccatg aaccacggcg gccgtattgc gatgctgggt attccgccgt ctgatatgtc
    27781 tatcgactgg accaaagtga tctttaaagg cttgttcatt aaaggtattt acggtcgtga
    27841 gatgtttgaa acctggtaca agatggcggc gctgattcag tctggcctcg atctctcgcc
    27901 gatcattacc catcgtttct ctatcgatga tttccagaag ggctttgacg ctatgcgttc
    27961 gggccagtcc gggaaagtaa ttctgagctg ggattaacac gaacaagggc tggtattcca
    28021 gcccttttat ctggggataa tctgttgaat atgtaaaatc ctgtcagtgt aataaagagt
    28081 tcgtaattgc gctgatctct tatatagctg ttctcattat ctctctaccc tgaagtgact
    28141 ctctcacctg taaaaataat atctcacagg cttaatagtt tcttaataca aagcctgtaa
    28201 aacgtcagga taacttcaga ggtcgtcggt aatttatgat gaacagcacc aataaactta
    28261 gtgttattat tccgttatat aatgcgggcg atgatttccg cacttgtatg gaatctttaa
    28321 ttacgcaaac ctagactgct ctggaaatca ttattattaa cgatggttca acggataatt
    28381 ctgttgaaat agcaaagcat tacgcagaaa actatccgca cgttcgtttg ttgcatcagg
    28441 cgaatgctgg cgcatcggta gcgcgtaatc gtgggatcga ggtggcgacg ggcaaatatg
    28501 tcgcttttgt cgatgctgac gatgaggtct atcccaccat gtacgaaacg ctgatgacca
    28561 tggcgttaga ggacgacctc gacgtggcgc agtgcaacgc tgactggtct tttcgtgaaa
    28621 cgggagaaac ctggcaatcc atccccagcg atcgccttcg ctcaaccggc gtattaaccg
    28681 gcccggactg gctgcggatg gggctttctt cgcgccgttg gactcacgtt gtctggatgg
    28741 gggtttatcg ccgtgatgtt attgttaaaa ataacattaa atttattgcc ggattacatc
    28801 atcaggatat tgtctggaca acagaattca tgtttaacgc gctgcgtgcg cgatataccg
    28861 agcaatcatt atataaatat tatctgcata atacgtcagt gagtcggttg catagacaag
    28921 ggaataaaaa ccttaattat caacgtcact atattaagat tacccgcctg ctggagaaat
    28981 taaatcgaaa ttatgccgac aaaattacga tttatccgga atttcatcag caaataactt
    29041 acgaagcatt gcgtgtttgc catgcggtgc gcaaagagcc ggatattctt acccgccaac
    29101 ggatgattgc cgagatattt acttccggta tgtataagcg cctgattacc aatgtgcgca
    29161 gcgtgaaggt cggttaccag gcgttactgt ggtctttccg cttatggcaa tggcgcgaca
    29221 aaacgcggtc gcaccatcgc attacgcgta gcgcctttaa tttgcgctag cgttaaactt
    29281 cgccgcttcg ggctgtttgc cccagccttg ccactgatgc tggaagtaaa cgatcagcgt
    29341 gctctggctg atgctttcgc ttaatacttc aaagaagcga ttagcataaa caggttctat
    29401 cggtttcttc ggtttgcaca gcttcacgcc acggaacgga ttacgcggtg catcaggcac
    29461 agcgtttttc ggcggtgtag aagtatcaac ctgcggttca ttcagcaagc tgctggcttt
    29521 caccagcgta atgtctggcg gcaggttata aaccatctgt tgtagcacgc gtaccgttaa
    29581 agggtgagga tgcccaatgg caatggttga accgttgcga cgcgccagat caattgcgcg
    29641 attaaattgc acacggatgt ccgcttcgtt ctgcgaatcg tcgaggaaca ccttccgttt
    29701 aataaccttc acgccagtac cttgcgcggc gcgcatcgcc tgggtattac cgatggttac
    29761 gctgtcgagg aagtaaagat tgtaacgctc cagtgcctgc atcactttct gcataccaaa
    29821 caggttagag gtcatcttgc tacccatgtg gttgttgatc cccacggcat agggcacgtt
    29881 attgaccgca ctacgaataa tgcgctcaat ttcgtcgctg ctcatctccg ggcgcagcgt
    29941 atttttctcc agcggctgtt tactcagtgg tgccatcggg agatgaatca acacttcgtg
    30001 cccgctgtta tgcgctttgg tcgccatctc tctggcgtgc ggtgaatcgg gtaatacagc
    30061 gacggagata gcggagggca tcgccagcac ctggttttcg ttgtgcgggc gatacccaaa
    30121 atcatcaatg acgatggcaa gtttgccagc aagtacgggg gaggagagcg ccaacagagc
    30181 ggcaaatgca agaacgttac gacgaaatgg aaacaaaact tatcttccca accacggctg
    30241 tggattgacc gcctgaccct ggcggcgaat ttcgaaatag agtgaaggcc gaccctgacc
    30301 gccactgctg cccaccagtg caattggctg gcccgcgcga acctgcgaac caacgctcac
    30361 cagtgcgctc tgattatagc cgtaaagact catgtcgcct ttaccgtgct caaccaccac
    30421 caccagaccg taaccttgca gccagtcagc cagaatcact cgaccgtcgg caattgcttt
    30481 aacttcagta ccttcagagg caccgataac catccctttc cagcgtaatt caccctgtag
    30541 ctgctcgcca tagcgatgca gcgtcggccc gcgaactggc cagaatgcct gaccacgcgg
    30601 cgcacccaga ccaccagttc gggacatcag cgatttttcg ctttcggtcg gtttgtaggt
    30661 ggtgcctttg cgcgtcgctt ctttctggcg gtcgcgaacc gcctgggcct cacgcgcttc
    30721 tcgttcagca cgcgctttcg ccgcggcttc cgcacgggca atgctgttac gcagacggga
    30781 ttcgttggca cgcagttcac ttagctgctg ctgaccttgc tggatggaag attccagccc
    30841 cgccagcgtc tttttacgct cgttcagagc ctgagtcagt ttcgcctgtt gggcgcgctg
    30901 ttcatataac agcgtttgtt gctcgctttg tttctcttcc agttcagcac gctgcatggc
    30961 gacttcttca cgcgtttgct tcaactgggc aatggtttct tgtcgcgcct ggttgagata
    31021 gccgaaataa gcctgtaaac gctgtccaca ctggctttct tcaccgctga gaattagctg
    31081 aataccggta tgctcgccct gacggaatgc ggcatccagt tgtgcggcga ggctgcgctc
    31141 ctgggcggct ttttgctgct ccagtttggc aatcgacgcg ttcatctcat caatctgttt
    31201 attgagttga ttgagcgtgt tttgcgtttc gcgcagctta cgggtggctt cagagatcgc
    31261 ttcttcctgc tttttcaatt gtgcgagcag gcttgcgcgt tgttgttgct tttggcgtac
    31321 cgcgcgctct tttgcggcga tatcggcctg aatagatttg agttggtcac gctcatccgc
    31381 gtgggcggaa aaggcgcaca acaatacgcc agcgctaaga acgctggcgt agatgatggg
    31441 cctgattgca aacctgcgcg gtttcacggc ccgtgtcatg gtattaatcg cctttcccct
    31501 catggggagg gattattcca cgatgaacag cggcttacca gtcatctctt gcgggatttc
    31561 catacccatc agcgacaaca tggtcggcgc gatgtcagaa agtttgccgc ctgcaaccgc
    31621 tttcacgttc ttatcaccaa cgtaaatcag cggaactggc aggttggtgt gtgccgtgtg
    31681 tgcctgaccc gttgccggat cgcgcatctg ttcagcgtta ccgtggtcag cggtgatcag
    31741 cagttgtcca cccacggact caaccgcttt cgcgacttct tccacgcagt gatccagtgc
    31801 ttcaaccgct ttaaccgccg cttccatcac cccggtgtga cctaccatgt cgccgttcgg
    31861 atagttacag ataatggtgt cgtatttgcc gctcttgatg gccgcaacca gtttttcggt
    31921 cagctctgcg gagctcattt ccggttgcag atcgtaggta gccactttcg gtgagttgat
    31981 cagaatgcga tcttcgcctt tgaatgactc ttctacgcca ccgttgaaga agaaagtaac
    32041 gtgggcatat ttttcggttt cggaaatacg caactgagtt ttgtcgtttt tcgccatcca
    32101 ctcgccgaag gtgttaacca gggaagcggg tgggtaagca accgcagttt tgatgtcagc
    32161 ggcgtattcg gtcagcatca cgaaatcgac gttaaccact ttcttacgcg cgaagccgtc
    32221 gaaatctgcg tttacgaatg cacgagtgat ttcgcgcgcg cggtcagcac ggaagttcat
    32281 gaaaatcagc gcatcgccgt cttccattgc cgcatctggc tgaccttctg cacgaataac
    32341 ggtcgctttc acgaactcgt cgttttcgtc gcgagcataa gctgcctgca aaccagcaac
    32401 ggcagtatcg gcctggaact caccctgcgc cagagtcagc aggtcatagg ctttttcaac
    32461 gcgatcccaa cggttatcgc ggtccatcgc gtagtaacga ccaatgatgg acgctacgcg
    32521 gcctttaccc agcgcagcaa atttctcttc aaattttttc agcgaggatt cagcactgcg
    32581 cggcggggtg tcgcgaccgt caaggaatgc gtgcaggtag attttttctg cgccgcgttc
    32641 agctgccagt tctaccatcg ccatgatgtg atcttcgtgg ctgtgtacgc cgcctgcgga
    32701 gagcagaccc ataatgtgta ctgctttacc tgcgtttttc gctttatcta ccgcgccagt
    32761 cagcactgga ttagcaaaga aagcgcgatc tttgatttca acgtccagac gagtcaggtc
    32821 ctgatacacg atgcggccgg cacccaggtt aacgtggcct acttcggagt tacccatctg
    32881 acggtcaggc agaccgactt ccagaccgga agcgtcgatc agggtatgcg gacgattggc
    32941 ccacagtgca tccattaccg gggttttagc actaaaaatg gcgttatcct gctgttcttc
    33001 acgatagcca tagccatcca gaatcaccag taccataggt tttttagaaa ccgacattgc
    33061 gacaacctca tactcaagag tcaaaatttg cgtaatttta ctacagctga atcgataaaa
    33121 tagcctctga agatcaaaat atacgaccgc tcgcggcaag ccgatgccag atttgcgctt
    33181 ttttttcgtc gtgccccgca aaattgcatt ccagttaacg cgctggctgt atttgccgca
    33241 ccgcgcaggt atactccttt cctggttttt ttaatcacta cgtcgggagt tgttaccccc
    33301 catgcaagaa attatgcaat ttgttggccg tcatcccata ctgagtatcg cttggatcgc
    33361 gttactggtg gcggttcttg tgactacgtt taagagcctg acctcgaaag tgaaggtgat
    33421 tactcgtggt gaagctacgc gtctgatcaa caaagaagac gctgtggttg tggatttacg
    33481 tcagcgtgat gacttccgta aaggccatat cgcaggttct atcaatctgt tgccgagcga
    33541 aatcaaagcc aacaatgttg gtgagcttga gaagcacaaa gacaaaccgg ttatcgtggt
    33601 agacggttct ggcatgcagt gccaggagcc tgcaaacgcg ctgacgaaag ctggttttgc
    33661 gcaagtattc gtgctgaaag agggcgttgc tggctgggct ggcgaaaact tgcctctggt
    33721 gcgcggcaaa taatttacct gtcgtctttc atgatgcagg ccgttagctg caattaggcc
    33781 cccagcgact tattgttata agcttctggg gacactccat tttgcagccg ccctgcaaca
    33841 tgaaatttca gggtaaaaaa acaggagcta aattatggcc aatgttgaaa tctataccaa
    33901 agaaacctgc ccgtattgcc atcgtgcaaa agcactgctg agcagcaagg gcgtgagttt
    33961 tcaggagttg ccgatcgatg gcaatgccgc caagcgtgaa gagatgatca aacgcagcgg
    34021 tcgcaccacg gttccccaga tttttattga cgcacagcac attggcggct gtgatgactt
    34081 gtatgcattg gatgcacgtg gtggactgga tcccctgctg aaataacgtg tgaacgttgg
    34141 cattacattg cgcagtattt aaggacaaca cttaagggtt ttctacacat gtcagaacaa
    34201 aacaacactg aaatgacttt ccagatccaa cgtatttata ccaaggatat ctctttcgaa
    34261 gcgccgaacg cgccgcacgt tttccagaaa gattggcaac cagaagttaa acttgatctg
    34321 gatacggcat cttcccaact ggcagatgac gtatacgaag tggtactgcg tgttaccgta
    34381 acggcctccc tgggcgaaga aaccgcgttc ctgtgtgaag ttcagcaggg cggtattttc
    34441 tccatcgcgg gtatcgaagg cacccagatg gcacattgcc tgggcgcata ctgcccgaac
    34501 attctgttcc cgtatgctcg tgagtgcatc accagcatgg tatcccgcgg tacattcccg
    34561 caactgaacc ttgcgccggt taacttcgat gcgctgttca tgaactattt gcagcagcag
    34621 gctggcgaag gtactgaaga acatcaggat gcctgatgaa ccaacgtaat gcttcaatga
    34681 ctgtgatcgg tgccggctcg tacggcaccg ctcttgccat taccctggca agaaatggcc
    34741 acgaggttgt cctctggggc catgaccctg aacatatcgc aacgcttgaa cgcgaccgct
    34801 gtaacgccgc gtttctcccc gatgtgcctt ttcccgatac gctccatctt gaaagcgatc
    34861 tcgccactgc gctggcagcc agccgtaata ttctcgtcgt cgtacccagc catgtctttg
    34921 gtgaagtgct gcgccagatt aaaccgctga tgcgtcctga tgcgcgtctg gtgtgggcga
    34981 ccaaagggct ggaagcggaa accggacgtc tgttacagga cgtggcgcgt gaggccttag
    35041 gcgatcaaat tccgctggcg gttatctctg gcccaacgtt tgcgaaagaa ctggcggcag
    35101 gtttaccgac ggctatttcg ttggcctcta ccgaccagac ctttgccgat gatctccaac
    35161 aattgctgca ctgtggcaaa agtttccgcg tttacagcaa cccggatttc atcggtgtgc
    35221 agcttggcgg tgcggtgaaa aacgtcattg ccattggcgc ggggatgtcc gacggtatcg
    35281 gttttggtgc gaatgcgcgt acggcactga tcacccgtgg gctggctgaa atgtcgcgtc
    35341 ttggcgcggc gctgggtgcc gagcctgcca cctttatggg catggcgggg ctgggcgatc
    35401 ttgtgcttac ctgtaccgac aaccagtcgc gtaaccgccg ttttggcatg atgctcggtc
    35461 agggcatgga tgtacaaagc gcgcaggaga agattggtca ggtggtggaa ggctaccgca
    35521 atacgaaaga agtccgcgaa ctggcgcatc gcttcggcgt agaaatgcca ataaccgagg
    35581 aaatttatca agtattatat tgcggaaaaa acgcgcgcga ggcagcattg acgttattag
    35641 gtcgtgcacg caaggacgag cgcagcagcc actaacccca gggaaccttt gttaccgcta
    35701 tgacccggcc cgcgcagaac gggccggtca ttatctcatc gtgtggagta agtaatgtcg
    35761 tgtgaagaac tggaaattgt ctggaacaat attaaagccg aagccagaac gctggcggac
    35821 tgtgagccaa tgctggccag tttttaccac gcgacgctac tcaagcacga aaaccttggt
    35881 agtgcactga gctacatgct ggcgaacaag ctgtcatcgc caattatgcc tgctattgct
    35941 atccgtgaag tggtggaaga agcctacgcc gctgacccgg aaatgatcgc ctctgcggcc
    36001 tgtgatattc aggcggtgcg tacccgcgac ccggcagtcg ataaatactc aaccccgttg
    36061 ttatacctga agggttttca tgccttgcag gcctatcgca tcggtcactg gttgtggaat
    36121 caggggcgtc gcgcattggc aatctttctg caaaaccagg tttctgtgac gttccaggtc
    36181 gatattcacc cggcagcaaa aattggccgt ggcattatgc tcgaccacgc cacgggcatc
    36241 gttgtgggtg aaacggcggt aattgaaaac gacgtatcga ttctgcaatc tgtgacgctt
    36301 ggcggtacgg gtaaatctgg tggtgaccgt cacccgaaaa ttcgtgaagg tgtgatgatt
    36361 ggcgcgggcg cgaaaatcct cggcaatatt gaagttggtc gcggcgcgaa gattggcgca
    36421 ggttccgtgg tgctgcaacc ggtgccgccg catacaaccg ccgctggcgt tccggctcgt
    36481 attgtcggta aaccagacag cgataagcca tcaatggata tggaccagca tttcaacggt
    36541 attaaccata catttgagta tggggatggg atctaatgtc ctgtgatcgt gccggatgcg
    36601 atgtaatcat ctatccggca tacagtaact aatctctcaa caacgctccc ggatatccca
    36661 gctgccgcca ggcttcatac accactaccg acaccgcatt ggacagattc atgctgcggc
    36721 tgtccggcac catcggaatg cgaatttttt gttcagcggg cagggcatca agaatgctcg
    36781 ctggcaggcc gcgtgtttcc gggccgaaca tcagataatc gccatcctga tagcttacgg
    36841 cgctgtgagc aggcgtacct ttcgtggtga gggcaaacag gcgctgggga ttttctgctt
    36901 cgaggaacgc gcgatagtca tgatgacgcg taacggcggt aaactcgtga tagtccagcc
    36961 ccgcgcggcg caggcgctta tcgtcccagg caaatcccat cggttcgatg atatgcagac
    37021 gaaagccggt attagcgcaa agacggatga tgttgccagt atttggcgga atttctggtt
    37081 cgtaaagtac gatgtttagc atactgcccc cttagtgcgg gggcaggata gcagaaaatt
    37141 ggtgaaccgt gcggcctttt cccctcaccc cggccctccc cctgtctctt gatcaggaga
    37201 tctgatcaag agacagctcc ctgagggaga gggttagggg ggtgccccta ttaagttgtc
    37261 aagcatgtta tgacccctgc ggggtataaa aagtcccgtc gcgcatcatg gcgaacagaa
//
LOCUS       DAJVUP010000020        36817 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.020, whole genome shotgun sequence.
ACCESSION   DAJVUP010000020 DAJVUP010000000
VERSION     DAJVUP010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36817
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.020"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            584..670
                     /gene="leuL"
                     /locus_tag="OQQ75_000959"
     CDS             584..670
                     /gene="leuL"
                     /locus_tag="OQQ75_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leu operon leader peptide"
                     /protein_id="HCS1975369.1"
                     /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH"
     gene            763..2334
                     /gene="leuA"
                     /locus_tag="OQQ75_000960"
     CDS             763..2334
                     /gene="leuA"
                     /locus_tag="OQQ75_000960"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HCS1975370.1"
                     /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME
                     VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT
                     SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN
                     AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV
                     HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI
                     CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
                     AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR
                     LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITDYNVELVKYS
                     LTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
                     LQRKAQHNENNKETV"
     gene            2334..3425
                     /gene="leuB"
                     /locus_tag="OQQ75_000961"
     CDS             2334..3425
                     /gene="leuB"
                     /locus_tag="OQQ75_000961"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HCS1975371.1"
                     /translation="MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYD
                     VGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHF
                     KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
                     AFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD
                     VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG
                     FGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGI
                     RTGDLARGAAAVSTDEMGDIIARYVAEGV"
     gene            3428..4828
                     /gene="leuC"
                     /locus_tag="OQQ75_000962"
     CDS             3428..4828
                     /gene="leuC"
                     /locus_tag="OQQ75_000962"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HCS1975372.1"
                     /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL
                     RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH
                     PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
                     GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT
                     LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV
                     VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL
                     TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGQVKAQAEAEGLD
                     KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
                     AAAAVTGHFADIRNIK"
     gene            4839..5444
                     /gene="leuD"
                     /locus_tag="OQQ75_000963"
     CDS             4839..5444
                     /gene="leuD"
                     /locus_tag="OQQ75_000963"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HCS1975373.1"
                     /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
                     NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
                     APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY
                     RFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN"
     gene            complement(5493..6575)
                     /locus_tag="OQQ75_000964"
     CDS             complement(5493..6575)
                     /locus_tag="OQQ75_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1975374.1"
                     /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV
                     GAQPFWIGLFYTVNTIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNAPLFAFNRH
                     YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSIAAGIFTLSLVLIAFML
                     PSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPD
                     KLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALM
                     TLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW
                     GHFAVYWVIAVISVVALFLTAKVKDV"
     gene            complement(6677..6808)
                     /gene="sgrT"
                     /locus_tag="OQQ75_000965"
     CDS             complement(6677..6808)
                     /gene="sgrT"
                     /locus_tag="OQQ75_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake inhibitor SgrT"
                     /protein_id="HCS1975375.1"
                     /translation="MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES"
     gene            6897..8552
                     /gene="sgrR"
                     /locus_tag="OQQ75_000966"
     CDS             6897..8552
                     /gene="sgrR"
                     /locus_tag="OQQ75_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SgrR"
                     /protein_id="HCS1975376.1"
                     /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL
                     NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT
                     VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE
                     NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIA
                     DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRN
                     TTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEG
                     CYYLLFDSRTHRGANQQVRDWVNYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART
                     IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIES
                     DIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA
                     SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
     regulatory      8586..8685
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            8716..9699
                     /gene="thiB"
                     /locus_tag="OQQ75_000967"
     CDS             8716..9699
                     /gene="thiB"
                     /locus_tag="OQQ75_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HCS1975377.1"
                     /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAF
                     EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA
                     ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT
                     STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
                     PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP
                     TGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISGWQRAVSR"
     gene            9675..11285
                     /gene="thiP"
                     /locus_tag="OQQ75_000968"
     CDS             9675..11285
                     /gene="thiP"
                     /locus_tag="OQQ75_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HCS1975378.1"
                     /translation="MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWV
                     AVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL
                     PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ
                     ALENIPDEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
                     GGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQ
                     GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS
                     LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFL
                     LLNNTIGLQQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL
                     KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA
                     VTALILLLLCFLLFTVIEKLPGRNVKTD"
     gene            11269..11967
                     /gene="thiQ"
                     /locus_tag="OQQ75_000969"
     CDS             11269..11967
                     /gene="thiQ"
                     /locus_tag="OQQ75_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706019.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein
                     ThiQ"
                     /protein_id="HCS1975379.1"
                     /translation="MLKLTDITWLYQHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL
                     IAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL
                     NAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL
                     DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELL
                     SGKASASAILGITG"
     gene            complement(12080..12844)
                     /locus_tag="OQQ75_000970"
     CDS             complement(12080..12844)
                     /locus_tag="OQQ75_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1975380.1"
                     /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG
                     LGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE
                     HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI
                     LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL
                     WLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV"
     gene            complement(12930..13808)
                     /gene="araC"
                     /locus_tag="OQQ75_000971"
     CDS             complement(12930..13808)
                     /gene="araC"
                     /locus_tag="OQQ75_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HCS1975381.1"
                     /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
                     YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRA
                     YWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLL
                     LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ
                     LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF
                     RAGCEEKVNDVAVKLS"
     gene            14147..15847
                     /gene="araB"
                     /locus_tag="OQQ75_000972"
     CDS             14147..15847
                     /gene="araB"
                     /locus_tag="OQQ75_000972"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HCS1975382.1"
                     /translation="MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCD
                     APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL
                     ALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI
                     LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP
                     PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH
                     MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG
                     QSAFGDIYAWFDRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLP
                     VVLNWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI
                     AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP
                     SAQQKMASAVEKTLQPRSEQTQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
                     "
     gene            15858..17360
                     /gene="araA"
                     /locus_tag="OQQ75_000973"
     CDS             15858..17360
                     /gene="araA"
                     /locus_tag="OQQ75_000973"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HCS1975383.1"
                     /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKL
                     PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ
                     FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERI
                     GSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
                     NSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFT
                     TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
                     YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAI
                     VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH
                     TVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR"
     gene            17560..18255
                     /gene="araD"
                     /locus_tag="OQQ75_000974"
     CDS             17560..18255
                     /gene="araD"
                     /locus_tag="OQQ75_000974"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HCS1975384.1"
                     /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS
                     GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT
                     IWAQSGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA
                     AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMEIFCRQLAPQLPDMQQTLLDKH
                     YLRKHGAKAYYGQ"
     gene            18330..20681
                     /gene="polB"
                     /locus_tag="OQQ75_000975"
     CDS             18330..20681
                     /gene="polB"
                     /locus_tag="OQQ75_000975"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HCS1975385.1"
                     /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF
                     IPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT
                     VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT
                     RHGELYCIGLEGCGQRIVYMLGSENGDASSLDFELEYVASRPQLLEKLNAWFANYDPD
                     VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID
                     GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK
                     DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG
                     EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
                     TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC
                     RFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIG
                     RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEG
                     DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARL
                     VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL
                     DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF"
     gene            20845..23751
                     /gene="rapA"
                     /locus_tag="OQQ75_000976"
     CDS             20845..23751
                     /gene="rapA"
                     /locus_tag="OQQ75_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001117023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HCS1975386.1"
                     /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA
                     RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL
                     DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN
                     IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
                     MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL
                     LVVDEAHHLVWSEDAPSREYQAIEQLAEHMPGVLLLTATPEQLGMESHFARLRLLDPN
                     RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD
                     SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
                     SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV
                     ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
                     SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
                     YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE
                     QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLLDIIGINQDDRGDNMIVL
                     TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS
                     STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
                     EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL
                     SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ"
     gene            23763..24422
                     /gene="rluA"
                     /locus_tag="OQQ75_000977"
     CDS             23763..24422
                     /gene="rluA"
                     /locus_tag="OQQ75_000977"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HCS1975387.1"
                     /translation="MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD
                     SVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
                     HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGR
                     SHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD
                     F"
     gene            complement(24539..25354)
                     /gene="djlA"
                     /locus_tag="OQQ75_000978"
     CDS             complement(24539..25354)
                     /gene="djlA"
                     /locus_tag="OQQ75_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HCS1975388.1"
                     /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF
                     ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFR
                     VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEE
                     LGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDA
                     TTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK"
     gene            25609..27963
                     /gene="lptD"
                     /locus_tag="OQQ75_000979"
     CDS             25609..27963
                     /gene="lptD"
                     /locus_tag="OQQ75_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HCS1975389.1"
                     /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
                     GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR
                     TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
                     RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
                     PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
                     RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKV
                     SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
                     QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
                     AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL
                     EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI
                     YDDAAVEHFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG
                     GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI
                     SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD
                     NDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL"
     gene            28016..29302
                     /gene="surA"
                     /locus_tag="OQQ75_000980"
     CDS             28016..29302
                     /gene="surA"
                     /locus_tag="OQQ75_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SurA"
                     /protein_id="HCS1975390.1"
                     /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
                     LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
                     IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL
                     AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIA
                     HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE
                     SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGS
                     ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA
                     QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
     gene            29302..30291
                     /gene="pdxA"
                     /locus_tag="OQQ75_000981"
     CDS             29302..30291
                     /gene="pdxA"
                     /locus_tag="OQQ75_000981"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HCS1975391.1"
                     /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT
                     DRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAIENGHYVVETLA
                     RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
                     ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
                     GTEEIDTIIPVLDELRAQGMILNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
                     GFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ"
     gene            30288..31109
                     /gene="rsmA"
                     /locus_tag="OQQ75_000982"
     CDS             30288..31109
                     /gene="rsmA"
                     /locus_tag="OQQ75_000982"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HCS1975392.1"
                     /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI
                     GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFDELAE
                     KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
                     SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAF
                     NQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES"
     gene            31112..31489
                     /gene="apaG"
                     /locus_tag="OQQ75_000983"
     CDS             31112..31489
                     /gene="apaG"
                     /locus_tag="OQQ75_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HCS1975393.1"
                     /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ
                     LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI
                     DENGVPFSIDIPVFRLAVPTLIH"
     gene            31496..32338
                     /gene="apaH"
                     /locus_tag="OQQ75_000984"
     CDS             31496..32338
                     /gene="apaH"
                     /locus_tag="OQQ75_000984"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HCS1975394.1"
                     /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG
                     SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
                     RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
                     NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA
                     EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGE
                     AAAS"
     gene            complement(32416..32895)
                     /gene="folA"
                     /locus_tag="OQQ75_000985"
     CDS             complement(32416..32895)
                     /gene="folA"
                     /locus_tag="OQQ75_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HCS1975395.1"
                     /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR
                     HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ
                     FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
     gene            complement(33087..34949)
                     /gene="kefC"
                     /locus_tag="OQQ75_000986"
     CDS             complement(33087..34949)
                     /gene="kefC"
                     /locus_tag="OQQ75_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
                     /protein_id="HCS1975396.1"
                     /translation="MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW
                     GLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLG
                     LFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAI
                     PLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREV
                     FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF
                     FIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQ
                     GSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREA
                     DEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA
                     TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ
                     AGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTK
                     ARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS"
     gene            complement(34942..35472)
                     /gene="kefF"
                     /locus_tag="OQQ75_000987"
     CDS             complement(34942..35472)
                     /gene="kefF"
                     /locus_tag="OQQ75_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     oxidoreductase KefF"
                     /protein_id="HCS1975397.1"
                     /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI
                     DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGKALHGKHLLW
                     AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA
                     RHYKQRLLEWQEAHHG"
     gene            complement(35580..36817)
                     /locus_tag="OQQ75_000988"
                     /pseudo
     CDS             complement(35580..36817)
                     /locus_tag="OQQ75_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414587.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         8959 a        10081 c         9687 g         8090 t
ORIGIN      
        1 catgcatata aaataagaaa aagcaaaatg agtaaaattc ggaaaacata aagatacggg
       61 ttctgataaa aacagaatcc attgccgtgg aatgagtcat ttaccacagc ataataatcc
      121 ataatgtttt tgttgcgaaa acaatctaat cataactacc gcgaatactc aatcatctac
      181 aaaatggatt aaatgtgctt atttaataat taatttatat atttaatgca ttaattatta
      241 acattaatgg atcaataata ttcaccatat caatatcaaa aaaaattcgc aaaacatata
      301 attcaataca aatcatcagg ataggttttg caacgcgtgc attttgtccc ctttttcctc
      361 gttgattaga tgcaaaaatt tattctgaaa tatgtcaacc tatgaaaagt gtcggtcgtt
      421 aaacagaaat taatatcgct tgctttaacc accgcagcac aattagctaa ttttacggat
      481 gcagaactcg cgctggcggg acgtttttat tgcgtcaggg ttgacatccg tttttgtatc
      541 cagtaactct aaaagcatat cgcattcatc tggagctgat ttaatgactc acatcgttcg
      601 ctttatcggt ctactactac taaacgcatc ttctttgcgc ggtagacgag tgagcggcat
      661 ccagcattaa gccagcacgc agtcaaacaa aaaacccgcg ccattgcgcg ggttttttta
      721 tgcccgaagc gaggcgctct aaaagagaca aggacccaaa ccatgagcca gcaagtcatt
      781 attttcgata ccacattgcg cgacggtgaa caggcgttac aggcaagctt gagtgtgaaa
      841 gaaaaactgc aaattgcgct ggcccttgag cgtatgggtg ttgacgtgat ggaagtcggt
      901 ttccccgtct cttcgccggg cgattttgaa tcagtgcaaa ccatcgcccg ccaggttaaa
      961 aacagccgcg tatgcgcgtt agctcgctgc gtggagaaag atatcgacgt ggcggccgaa
     1021 tccctgaaag tcgccgaagc cttccgtatt cataccttta ttgccacttc gccaatgcac
     1081 atcgccacca agctgcgcag cacgctggat gaagtgatcg aacgcgctat ctatatggtg
     1141 aaacgcgccc gtaattacac cgatgatgtt gaattttctt gcgaagatgc cgggcgtacc
     1201 cccattgccg atctggcgcg agtggtcgaa gcggcgatta atgccggtgc caccaccatc
     1261 aacattccgg acaccgtggg ctacaccatg ccgtttgagt tcgccggaat catcagcggt
     1321 ctgtatgaac gcgtacctaa catcgacaaa gccattattt ccgtacatac ccacgacgat
     1381 ttaggcctgg cggtcggcaa ctcactggcg gcggtacatg ccggtgcacg ccaggtggaa
     1441 ggtgcaatga acgggatcgg cgagcgtgcc ggtaactgtt cgctggaaga agtcatcatg
     1501 gcgattaaag ttcgtaagga tattctcaac gtccacaccg ccattaatca ccaggagata
     1561 tggcgcacca gccagttagt tagccagatt tgtaatatgc cgatcccggc aaacaaagcc
     1621 attgttggca gcggcgcatt cgcccactcc tccggtatcc accaggatgg cgtgctgaaa
     1681 aaccgcgaaa actacgaaat catgacacca gaatctattg gtctgaacca aatccagctg
     1741 aatctgacct ctcgttcggg gcgtgcggcg gtgaaacatc gcatggatga gatggggtat
     1801 aaagaaagtg aatataattt agacaatttg tacgatgctt tcctgaagct ggcggacaaa
     1861 aaaggtcagg tgtttgatta cgatctggag gcgctggcct tcatcggtaa gcagcaagaa
     1921 gagccggagc atttccgtct ggattacttc agcgtgcagt ctggctctaa cgatatcgcc
     1981 accgccgccg tcaaactggc ctgtggcgaa gaagtcaaag cagaagccgc caacggtaac
     2041 ggtccggtcg atgccgtcta tcaggcaatt aaccgcatca ctgactataa cgtcgaactg
     2101 gtgaaataca gcctgaccgc caaaggtcac ggtaaagatg cgctgggtca ggtggatatt
     2161 gtcgccaact acaacggtcg ccgcttccac ggcgtcggcc tggccaccga tattgtcgag
     2221 tcctccgcca aagccatggt gcacgtactg aacaatatct ggcgtgccgc agaagtcgaa
     2281 aaagagttgc aacgcaaagc tcaacacaac gaaaacaaca aggaaaccgt gtgatgtcga
     2341 agaattacca tattgccgta ttgccggggg acggtattgg tccggaagtg atgacccagg
     2401 cgctgaaagt gctggatgcc gtgcgcaacc gctttgcgat gcgcatcacc accagccatt
     2461 acgatgtagg cggcgcagcc attgataacc acgggcaacc actgccgcct gcgacggttg
     2521 aaggttgtga gcaagccgat gccgtgctgt ttggctcggt aggcggtccg aaatgggaac
     2581 atttaccacc agaccagcaa ccagaacgcg gcgcgctgtt gcctttgcgt aagcacttca
     2641 aattattcag caacctgcgt ccggcaaaac tgtatcaggg gctggaagca ttctgtccgc
     2701 tgcgtgctga cattgccgct aacggcttcg acatcctgtg cgtgcgcgaa ctgaccggcg
     2761 gcatctattt cggtcagcca aaaggccgcg aaggtagcgg acagtatgaa aaagcgtttg
     2821 ataccgaggt gtatcaccgt tttgagatcg aacgtatcgc ccgcatcgcg tttgaatctg
     2881 cccgcaagcg tcgccacaaa gtcacctcaa tcgacaaagc caacgtgctg caatcctcta
     2941 ttttatggcg ggagatcgtt aacgagatcg ccacggaata cccggatgtc gaactggcgc
     3001 atatgtacat cgacaacgcc accatgcagc tgattaaaga tccatcacag tttgacgtcc
     3061 tgctgtgctc caacctgttt ggcgacattc tgtctgacga gtgcgcaatg atcactggct
     3121 cgatggggat gttgccttcc gccagcctga acgagcaagg ttttggtctg tatgaaccgg
     3181 caggcggctc agcaccagat atcacaggca aaaacatcgc caacccgatt gcgcaaattc
     3241 tgtcgctggc actgctgctg cgctacagcc tggatgccga tgatgcggct tgcgccattg
     3301 aacgcgccat taaccgcgca ttagaagaag gcattcgcac cggggattta gcccgtggcg
     3361 ctgccgccgt tagtaccgat gaaatgggcg atatcattgc ccgctatgtg gcagaagggg
     3421 tgtaatcatg gctaaaacgt tatacgaaaa attattcgac gctcacgtag tgtacgaagc
     3481 cgaaaacgaa accccgctgt tatatatcga ccgccacctg gtgcatgaag tgacctcacc
     3541 gcaggcgttc gatggtctgc gcgcccacgg tcgcccggta cgtcagccgg gcaaaacctt
     3601 cgccactatg gatcacaacg tctctaccca gacgaaagac attaatgcct gtggtgaaat
     3661 ggcgcgcatc cagatgcagg agctgattaa aaactgcaaa gaatttggcg tcgaactgta
     3721 tgacctgaat cacccgtatc aggggatcgt ccacgtaatg gggccggaac agggcgtcac
     3781 cttgccgggg atgaccattg tctgcggcga ctcgcatacc gccacccacg gcgcgtttgg
     3841 cgcactggcc tttggtatcg gcacttccga agttgaacac gtactggcaa cgcaaaccct
     3901 gaaacagggc cgcgcaaaaa ccatgaaaat tgaagtccag ggcaaagccg cgccgggcat
     3961 taccgcaaaa gatatcgtgc tggcaattat cggtaaaacc ggtagcgcag gcggcaccgg
     4021 gcatgtggtg gagttttgcg gcgaagcaat ccgtgattta agcatggaag gtcgtatgac
     4081 cctgtgcaat atggcaatcg aaatgggcgc aaaagccggt ctggttgcac cggacgaaac
     4141 cacctttaac tatgtcaaag gccgtttgca tgcgccgaaa ggcaaagatt tcgacgacgc
     4201 cgttgcctac tggaaaaccc tgcaaaccga cgaaggcgca actttcgata ccgttgtcac
     4261 tctgcaagca gaagaaattt caccgcaggt cacctggggc accaatccag gccaggtgat
     4321 ttccgtgaac gacaatattc ccgatccggc ttcgtttgcc gatccggttg aacgcgcgtc
     4381 ggcagaaaaa gcgctggcct atatggggct gaaaccgggc attccgctga ccgaagtggc
     4441 tatcgacaaa gtgtttatcg gttcctgtac caactcgcgc attgaagatt tacgcgcggc
     4501 agcggagatc gccaaagggc gaaaagtcgc gccaggcgtg caggcactgg tggttcccgg
     4561 ctctggccag gtaaaagccc aggcggaagc ggaaggtctg gataaaatct ttattgaagc
     4621 cggttttgaa tggcgcttgc ctggctgctc aatgtgtctg gcgatgaaca acgaccgtct
     4681 gaatccgggc gaacgttgtg catccaccag caaccgtaac tttgaaggcc gccaggggcg
     4741 cggcgggcgc acgcatctgg tcagcccggc aatggctgcc gctgctgctg tgaccggaca
     4801 tttcgccgac attcgcaaca ttaaataagg agcagaccat ggcagagaaa tttatcaaac
     4861 acacaggcct ggtggttccg ctggatgccg ccaatgtcga taccgatgca atcatcccga
     4921 aacagttttt gcagaaagtg acccgtacgg gttttggcgc gcatctgttt aacgactggc
     4981 gttttctcga tgaaaaaggc caacagccaa acccggactt cgtgctgaac ttcccgcagt
     5041 atcagggcgc ttccattttg ctggcacgag aaaacttcgg ctgtggctcc tcgcgtgagc
     5101 acgcgccctg ggcattgacc gactacggtt ttaaagtggt gattgcgccg agttttgctg
     5161 acatcttcta cggcaatagc tttaacaacc agctgctgcc ggtgaaatta agcgatgcag
     5221 aagtggacga actgtttgcg ctggtgaaag ccaatccggg gatccatttc gacgtggatc
     5281 tggaagcgca agaggtgaaa gcgggagaga aaacctatcg ctttaccatc gatgccttcc
     5341 gccgccactg catgatgaac ggtctggaca gtattgggct taccttgcag cacgacgacg
     5401 ccattgccgc ttatgaagca aaacaacctg cgtttatgaa ttaatcccct tgcccggtca
     5461 aatgaccggg ctttccgcta tcgtccacgt catcaaacgt ctttaacctt tgcggttaaa
     5521 aataatgcga caacagaaat aaccgcaatt acccagtaga cagcaaagtg cccccaactt
     5581 tgtgcaattg ctccctgaat aacgccagcc agaattaccc cggtagaaat actgttagta
     5641 aataaggtgg tagctgcccc cgctcttcca ggcattaaat cctgaaacca tagcatccca
     5701 atacccgcaa caatgccgat aaatacagcg ttaaaaagtt gcagcgtcat caacgccata
     5761 cggctatgaa agaaaatcaa tccggtgtaa aacagtactc ctgccgccac tgctatgacc
     5821 atcattcgcc gcttaccata acgtttgaca tagtagccag ccagaatcat tgctggtatt
     5881 tccagtccag ctgccgtccc catcaggaaa cccgccagtt tgtctggcaa tcctaactcg
     5941 ctactgatcc acaacggcat atcaataatg tacatggtgt tgcaggtcca cattaacgtc
     6001 gaggcgacaa ataacatccg tacgttacta tcctgccagc caccttgcat tgataaagca
     6061 ttttccgacg gcagttctac ccgcgccaca gacggaagca taaatgcaat caataccaga
     6121 ctgagtgtga atatcccggc ggcaatcgaa aacatcacca cttctcgcgc cgagttatcc
     6181 gcatattccc gcgccagagc aaataactgt ggcattgccg tattggccag agatgccaga
     6241 agcacaccac aggtgataag cgtcagataa tgacgattaa atgcaaacaa tggcgcattg
     6301 ccgatagcca tcaaacagca aaatataatc agttttcgcc gatcgccctg actgtcagaa
     6361 cgttttgcca accagaggct tacgccgatc ccagcaatag tattcaccgt ataaaagagt
     6421 ccgatccaga aaggttgcgc gccaacctca cgactcagaa ataagctcaa tgtaggagcc
     6481 tgtagcgccc cggccacccc catcataaaa gcgaccagca taaatgccgc gtaaacaccg
     6541 ttcatacggc gagccatcgt cattatccag atcatacgtt ccctttttag cgcggcgaga
     6601 ataaaaaaaa ccagcaggta taatctgctg gcgggtgatt ttacaccaat actcagtcac
     6661 acatgatgca ggcaagtcaa ctttcagaat tgcggtcatc ccactgcatc agtccttcaa
     6721 gcatggttaa tcgttgtggg acgcttaacc aacgcaacca gcacaacttc gctgtcgcgg
     6781 taaaatagtg ctgataaaac tgacgcatgg ggcacctcct tgcttcatcg ttaggaatta
     6841 ttgacttaat atagggaaaa taaaattgct gtcttttgcg caggagttcc ccttttatgc
     6901 catctgctcg tctgcaacaa cagttcatcc gcctgtggca atgctgcgag ggtaaatcgc
     6961 aggacacaac gctcaacgaa ctggcagcgt tattgagctg ctcgcgtcgt catatgcgta
     7021 ccctgctcaa caccatgcag gatcgcggct ggctgacgtg ggaagcggaa gtcgggcgcg
     7081 gtaaacgctc gcgtctgaca ttcctctata ccgggctggc gcttcagcaa cagcgggcgg
     7141 aagacctgct ggagcaggat cgtatcgacc aactagtgca gttggttggc gacaaagcga
     7201 ctgtgcggca aatgctggtt tctcatctgg gccgcagctt ccgccagggg cggcacatcc
     7261 tgcgcgtgct ctactatcgt ccgttgcgta atctgctacc tggcagcgca ttgcgccgtt
     7321 ccgaaaccca tattgcccgg caaatcttca gttcgctaac gcgcataaat gaggaaaatg
     7381 gggaactgga agcagacatc gcccaccact ggcagcaaat atcaccgctt cactggcgtt
     7441 tctttttgcg tccaggagtc cattttcatc atggtcgtga actggaaatg gacgacgtga
     7501 tcgcctcttt aaaacgaatc aatacgctgc cgctctattc gcatattgcg gacattgtgt
     7561 cgccgacgcc ctggacgctg gatatccatc tcacgcaacc ggaccgctgg ttaccgttac
     7621 tgctggggca agttccggcg atgatcctgc cgcgcgaatg ggaaaccctc agtaactttg
     7681 ccagccatcc catcggcacc ggtccgtatg cggtgatccg caacaccacc aatcaactga
     7741 aaattcaggc attcgatgac ttcttcggtt accgggcatt aatcgatgaa gttaacgtct
     7801 gggttctgcc ggaaattgcc gacgagccag ctggaggtct gatgctaaaa ggtccacagg
     7861 gtgaggaaaa agagattgaa agccgcctgg aggaaggttg ctactattta ctattcgaca
     7921 gccgcaccca tcgcggagcg aatcagcaag tcagggactg ggtaaactat gtgctttctc
     7981 caactaatct ggtctatttc gctgaggaac agtaccagca actgtggttc ccggcttatg
     8041 gactgctccc ccgttggcac catgcccgca ccataaagag cgaaaaaccg gctggcctgg
     8101 aaagcctcac cctgaccttt tatcaggatc acagtgagca tcgggtgatt gccgggatca
     8161 tgcagcagat tctggcaagt caccaggtca cgctggaaat caaagagatc agctacgatc
     8221 agtggcatga aggagagatc gagagcgata tctggcttaa tagcgccaac tttacgctgc
     8281 cgctggattt ttcgctgttc gcgcacttgt gcgaggtgcc gctgctccaa cactgtattc
     8341 cgatcgactg gcaagccgac gccgcccgct ggcgcaatgg cgaaatgaac ctggcgaact
     8401 ggtgccagca actggtcgcc agtaaagcaa tggtgccgct tatccaccac tggctgatca
     8461 ttcagggaca acgcagtatg cgcggcctgc gtatgaatac cctcggctgg ttcgatttta
     8521 aatcagcgtg gtttgcgccg ccggatccat gattgctggt agataacaaa atcactacac
     8581 taacgccgtt ctcaacgggg tgccacgcaa acgcgtgcgc tgagaaaata cccgtcgaac
     8641 ctgatccgga taacgccggc gaagggattt gaggctcctt ctcaagtcct ttgccactct
     8701 tttttgaggt gcaaagtgtt aaaaaaatgt cttcccctgc tgttgctgtg cacagcgccc
     8761 gttttcgcta aacccgttct gactgtttat acctacgatt ccttcgccgc cgactggggg
     8821 cctggtccaa agatcaaaaa agcttttgaa gccgactgta actgcgaact gaaactggtg
     8881 gcgctggaag atggcgtttc gcttctcaac cgtctacgga tggaaggcaa aaatagtaaa
     8941 gccgatgtgg tgctggggct ggataacaat ctgttagacg ccgccagtaa aaccggacta
     9001 tttgccaaaa gcggtgtggc agcggatgcc gttaacgttc ccggcggctg gaataatgac
     9061 actttcgtcc cgtttgatta cggctatttc gccttcgtct atgacaagaa caaactgaaa
     9121 aacccgccgc aaagcctgaa agaattggtt gagagcgatc aaaactggcg ggtgatttat
     9181 caggatccgc gcaccagtac gccggggctg ggcctgctgt tgtggatgca aaaagtctat
     9241 ggcgatgacg ccccacaagc ctggcaaaaa ctggcgaaga aaaccgtcac ggtcaccaaa
     9301 ggctggagcg aagcctacgg cctgttttta aaaggtgaaa gcgatctggt actgagttac
     9361 accacctctc cggcttatca cattctcgaa gagaaaaaag ataactacgc cgccgcgaac
     9421 tttagcgaag gtcactatct gcaggtggaa gtcgccgccc gcaccgctgc cagcaagcag
     9481 ccggagctgg cgcaaaaatt cctccagttt atggtttctc cggcttttca gaatgcgatc
     9541 ccaaccggta actggatgta tccggtggca aatgtcacgc tgcctgccgg gtttgaacaa
     9601 ttgaccaaac cggccaccac gctggagttc acaccagctg aagtggcggc acaacgtcag
     9661 gcatggatta gcggatggca acgcgccgtc agccgttaat tcccggctgg ttaattccag
     9721 gtgtaagcgc cgccacgctg gtggtagcgg ttgcgctcgc ggcgtttctc gccctgtggt
     9781 ggaacgcgcc gcagggtaac tgggtggcag tctggcagga cagctacctg tggcatgtgg
     9841 tgcgcttctc cttctggcag gcgtttctct cggcgctact ctctgtcgta cccgcgatat
     9901 tcctcgcccg cgccctctat cgcaggcgct ttccgggtcg gctggcgctg ttgcgtctgt
     9961 gcgcaatgac cttgatcctc ccggtgctgg ttgctgtttt cggcattctt agcgtctatg
    10021 gtcgccaggg ctggctggca tcgctctgcc aatcgctcgg tctggagtgg accttttcgc
    10081 cctacggcct gcaaggtatt ttgctggcgc acgtattttt taatctgccg atggcgagcc
    10141 gcttattact ccaggcactg gaaaacattc ccgacgaaca acgtcagctt gccgcccagc
    10201 ttgggatgcg cggctggcat tttttccgct tcgtcgaatg gccgtggtta cggcgacaaa
    10261 tcccgccggt tgctgcactt atctttatgc tctgtttcgc cagcttcgcc accgtgctat
    10321 cactgggcgg cggtccgcag gcgaccacta tcgagctggc tatttatcag gcgctgagtt
    10381 acgactacga tcctgcccgc gcggcgatgc tggcgctgat ccagatggtg tgttgccttg
    10441 ggctggtact attgagtcag cgattgagta aggccattgc gccaggcacc acgctgctgc
    10501 aaggctggcg cgacccggac gatcgtctgc atagccgcat ttgcgacacg gtgttaatag
    10561 tgctggcgtt gctgctgttg ttgccaccgt tgctggcggt gatcgtcgat ggggtaaatc
    10621 gccagttgcc ggaagtgctg gcacaaccgg tgctgtggca ggcgctgtgg acctcgttgc
    10681 gtattgcgct ggcggcaggt gtattgtgcg tagtgctgac catgatgctg ctatggagca
    10741 gtcgcgaact tcgggcacgg cagaaaatgc tggcgggtca ggcgctggag atgagcggca
    10801 tgttgattct cgccatgccg gggattgtgc tggctaccgg cttcttttta ctgctcaaca
    10861 acactatcgg cctgcaacaa tctgctgacg gcattgtgat tttcaccaat gcgttaatgg
    10921 cgatccctta tgcgctgaaa gtactggaaa acccgatgcg cgatatcacc gcccgctaca
    10981 gtatgttgtg tcagtcgctg ggcattgaag gctggtcgcg cttaaaagtg gtggagctgc
    11041 gcgccctgaa acgtccactg gcgcaggcgc tggcctttgc ctgcgtgctg tcgattggtg
    11101 attttggcgt ggtggcgttg ttcggtaacg atgatttccg taccctgccg ttttatctct
    11161 accagcaaat tggctcctat cgcagccagg acggcgcggt caccgcgtta attctgctgc
    11221 tactctgttt tctgctgttt accgtgattg aaaaactacc ggggcgaaat gttaaaactg
    11281 actgatatca cctggcttta ccaacatttg ccgatgcgtt ttagcttaac ggtggaacgc
    11341 ggcgagcagg tggcgatcct cgggccaagc ggcgcaggta aaagtaccct gctgaatttg
    11401 attgccggtt ttctgacgcc agccagcggt tcgctgacta tcgatggcgt tgatcacacc
    11461 acgacgccgc cgtcacgccg tccggtgtcg atgctgtttc aggagaacaa cctgttcagc
    11521 cacctgacgg tcgcgcagaa catcgggctg gggcttaatc caggattgaa gctgaacgcg
    11581 gcacagcagg agaaaatgca cgctatcgcc cgtcagatgg ggattgataa tttaatggcg
    11641 cggttaccgg gcgagctttc cggcggccag cgacagcgcg tggcgttagc gcgttgtctg
    11701 gtgcgcgaac agccgatttt attgctcgat gaaccgttct ctgcgctcga tccggcgtta
    11761 cgtcaggaga tgctgacgct ggtgagcacg agctgccagc agcaaaaaat gacgctattg
    11821 atggtgtcgc acagtgtgga agatgcggcg cggatcgcca cacgctcggt ggtggtcgcc
    11881 gacgggcgca tcgcctggca gggtaagact gaagaattgt tgagcggtaa ggcgagtgct
    11941 tcggcaatat tggggattac gggttagtat gcactgtcag atgcggcgtg aacaccttat
    12001 ccgacctacg gacagtgcgt tttgtaggcc tgataagacc ggtcagcgtc gcatcaggca
    12061 acccgcacaa gacaatcccc taaaccccaa ccactttacg caaaatatcg atatacaccg
    12121 gcatcaacgg gtggcgaatt aacaccacca gcgccaccac gccgatggca gaaatcaacg
    12181 gcgtcagcca caacaaacgg ccgcgcgaca aataatgact taaacgatcg gttgctttac
    12241 cgctgcgcca taaccgccag cacagccagc caccaaccca caaaaatacc gccgtcgcca
    12301 gcagcaacca tttaaactcg ccgctctgca ttccggctgg aatatcgatc gccgcgcccg
    12361 ccagaatccc aggcaggaag taaaacggtg gccacagcag gcagccgata atattcggcg
    12421 taatgaattt tgccaccggc agatccagca ttcccgccac cattggcacc agcggacgcg
    12481 tcgggccaac aaagcgaccg accagaatgg tgaacatgct gtgttgatgc aacgcatgtt
    12541 cagttttatc gagtaatgct ttgtttttct tcagaaatga ccagcgatgc aacggctttt
    12601 taaaacgcca gcccagccag aaggagatcc agtcgcccag cagacaaccg acaatccctg
    12661 ccagccaggc gtgccagaaa cttaactcgc cgctgccaat cagcgctccc agccccgcca
    12721 tcagcaccgt accgggtaga atcaaaccga ccagcgccag cgactccaga aaggccacca
    12781 acaccaccgc catcaatgaa tacacggtag attgggtaat aaagtgttcc agcaatgctt
    12841 gcataatgtg cctgtcaaat ggacgaagca gggattctgc aaaccctatg ctactccgtc
    12901 aagccgtcaa ttgtctgatt cgttaccaat tatgacaact tgacggctac atcattcact
    12961 ttttcttcac aaccggcacg gaactcgctc gggctggccc cggtgcattt tttaaatacc
    13021 cgcgagaaat agagttgatc gtcaaaacca acattgcgac cgacggtggc gataggcatc
    13081 cgggtggtgc tcaaaagcag cttcgcctgg ctgatacgtt ggtcctcgcg ccagcttaag
    13141 acgctaatcc ctaactgctg gcggaaaaga tgtgacagac gcgacggcga caagcaaaca
    13201 tgctgtgcga cgctggcgat atcaaaattg ctgtctgcca ggtgatcgct gatgtactga
    13261 caagcctcgc gtacccgatt atccatcggt ggatggagcg actcgttaat cgcttccatg
    13321 cgccgcagta acaattgctc aagcagattt atcgccagca gctccgaata gcgcccttcc
    13381 ccttgcccgg cgttaatgat ttgcccaaac aggtcgctga aatgcggctg gtgcgcttca
    13441 tccgggcgaa agaaacccgt attggcaaat attgacggcc agttaagcca ttcatgccag
    13501 taggcgcgcg gacgaaagta aacccactgg tgataccatt cgcgagcctc cggatgacga
    13561 ccgtagtgat gaatctctcc tggcgggaac agcaaaatat cacccggtcg gcaaacaaat
    13621 tctcgtccct gatttttcac caccccctga ccgcgaatgg tgagattgag aatataacct
    13681 ttcattccca gcggtcggtc gataaaaaaa tcgagataac cgttggcctc aatcggcgtt
    13741 aaacccgcca ccagatgggc attaaacgag tatcccggca gcaggggatc attttgcgct
    13801 tcagccatac ttttcatact cccgccattc agagaagaaa ccaattgtcc atattgcatc
    13861 agacattgcc gtcactgcgt cttttactgg ctcttctcgc taacccaacc ggtaaccccg
    13921 cttattaaaa gcattctgta acaaagcggg accaaagcca tgacaaaaac gcgtaacaaa
    13981 agtgtctata atcacggcag aaaagtccac attgattatt tgcacggcgt cacactttgc
    14041 tattccatag catttttatc cataagatta gcggatccta cctgacgctt tttatcgcaa
    14101 ctctctactg tttctccata cccgtttttt tggatggagt gaaacgatgg cgattgcaat
    14161 tggcctcgat tttggcagtg attctgtgcg agctttggcg gtggactgcg ccagcggtga
    14221 agagatcgcc accagcgtag agtggtatcc ccgttggcaa aaagggcaat tttgtgatgc
    14281 cccgaataac cagttccgtc atcatccgcg tgactacatt gagtcaatgg aagcggcact
    14341 gaaaaccgtg cttgcagagc ttagcgtcga acagcgcgca gctgtggtcg ggattggcgt
    14401 tgacagtacc ggctcgacgc ccgcaccgat tgatgccgac ggtaacgtgc tggcgctgcg
    14461 cccggagttt gccgaaaacc caaacgcgat gttcgtattg tggaaagacc acactgcggt
    14521 tgaagaagcg gaagagatta cccgtttgtg ccacgcgccg ggcaacgttg actactcccg
    14581 ctacattggt ggtatttatt ccagcgaatg gttctgggca aaaatcctgc atgtgactcg
    14641 ccaggacagc gccgtggcgc aatctgccgc atcgtggatt gagctgtgcg actgggtgcc
    14701 agctctgctt tccggtacca cccgcccgca ggatattcgt cgcggacgtt gcagcgccgg
    14761 gcataaatct ctgtggcacg aaagctgggg cggcttgccg ccagccagtt tctttgatga
    14821 gctggacccg atcctcaatc gccatttgcc ttccccgctg ttcactgaca cctggactgc
    14881 cgatattccg gtgggcacct tatgcccgga atgggcgcag cgtctcggcc tgcctgaaag
    14941 cgtggtgatt tccggcggcg cgtttgactg ccatatgggc gcagttggcg caggcgcaca
    15001 gcctaacgca ctggtaaaag ttatcggtac ttccacctgc gacattctga ttgccgacaa
    15061 acagagcgtt ggcgagcggg cagttaaagg tatttgcggt caggttgatg gcagcgtggt
    15121 acctggattt atcggtctgg aagcaggcca atcggcgttt ggtgatatct acgcctggtt
    15181 tgatcgcgta ctcggctggc cgctggaaca gcttgccgcc cagcatccgg aactgaaagc
    15241 gcaaatcaac gccagccaga aacaactgct tccggcgctg accgaagcat gggccaaaaa
    15301 tccgtctctg gatcacctgc cggtggtgct caactggttt aacggccgcc gcacaccgaa
    15361 cgctaaccaa cgcctgaaag gggtgattac cgatcttaac ctcgctaccg acgctccgct
    15421 gctgtttggc ggtttgattg ctgccaccgc ctttggcgca cgcgcaatca tggagtgctt
    15481 taccgatcag gggatcgccg tcaataacgt gatggcgctg ggcggcatcg cgcggaaaaa
    15541 ccaggtcatt atgcaggcct gctgcgacgt gctgaatcgc ccgctgcaaa ttgttgcctc
    15601 tgaccagtgc tgtgcgctcg gtgcggcgat ttttgctgcc gtcgccgcga aagtgcacgc
    15661 agacatccca tcagcccagc aaaaaatggc cagtgcggta gagaaaaccc tgcaaccgcg
    15721 cagcgaacag acacaacgct ttgaacagct ttatcgccgc tatcagcaat gggcgatgag
    15781 cgccgaacaa cactatcttc caacttccgc cccggcacag gctgcccagg ccgttccgac
    15841 tctataagga cacgataatg acgatttttg ataattatga agtgtggttt gtcattggca
    15901 gccagcatct gtatggcccg gaaaccctgc gtcaggtcac ccaacatgcc gagcacgttg
    15961 ttaatgcgct gaatacggaa gcgaaactgc cctgcaaact ggtgttgaaa ccgctgggca
    16021 ccacgccgga tgaaatcacc gctatttgcc gcgacgcgaa ttacgacgat cgttgcgctg
    16081 gtctggtggt gtggctgcac accttctccc cggccaaaat gtggatcaac ggcctgacca
    16141 tgctcaacaa accgttgctg caattccaca cccagtttaa cgcggcgctg ccgtgggaca
    16201 gtatcgatat ggactttatg aacctgaacc agactgcaca tggcggtcgc gagttcggct
    16261 tcattggcgc gcgtatgcgt cagcaacatg ccgtggttac cggtcactgg caggataaac
    16321 aagcccatga gcgtatcggc tcctggatgc gtcaggcggt ctctaaacag gatacccgtc
    16381 atctgaaagt ctgccgtttt ggcgataaca tgcgtgaagt agcggtcacc gatggtgata
    16441 aagttgccgc acagatcaag ttcggtttct ccgtcaatac ctgggcggtt ggcgatctgg
    16501 tgcaggtggt gaactccatc agcgacggcg atgttaacgc gctggtcgat gagtacgaaa
    16561 gctgctacac catgacgcct gccacacaaa tccacggcga aaaacgacag aacgtgctgg
    16621 aagcggcgcg tattgagctg gggatgaagc gtttcctgga acaaggtggc ttccacgcgt
    16681 tcaccaccac ctttgaagat ttgcacggtc tgaaacagct tccaggtctg gccgtacagc
    16741 gtctgatgca gcagggttac ggctttgcgg gcgaaggcga ctggaaaacc gccgccctgc
    16801 ttcgcatcat gaaggtgatg tcaaccggtc tgcagggcgg cacctccttt atggaggact
    16861 acacctatca cttcgagaaa ggtaatgacc tggtgctcgg ctcccatatg ctggaagtct
    16921 gcccgtcgat tgccgtagaa gagaaaccga tcctcgacgt tcagcatctc ggtattggtg
    16981 gtaaggacga tcctgcccga ctgatcttca atacccaaac cggtccagcg attgtcgcca
    17041 gcctgattga tctcggcgat cgttaccgtc tgctggttaa ctgtatcgac acggtgaaaa
    17101 caccgcactc cctgccgaaa ctgccggtgg cgaatgcgct gtggaaagcg caaccggatc
    17161 tgccaactgc ttccgaagcg tggatcctcg ctggtggcgc gcaccatacc gtcttcagcc
    17221 atgcgctgaa cctcaacgat atgcgtcagt tcgccgagat gcacgacatt gaaatcacgg
    17281 tgattgataa cgacacccgc ctgccagcgt ttaaagacgc actgcgctgg aacgaagtgt
    17341 attacggatt tcgtcgctaa gtagccacat caggtatgta acgcctgatg cgacgctgac
    17401 gcgtcttatc tggcctacac gctgcgattt tgtaggccgg ataagcaaag cgcatccggc
    17461 attcaacgcc tgatgcgacg ctggcgcgtc ttatcaggcc tacgcgctgc gattttgtag
    17521 accggataag cgaagcgcat ccggcacgaa ggagtcaaca tgttagaaga tctcaaacgc
    17581 caggtattag aagccaacct ggcgctgcca aaacacaacc tggtcacgct cacatggggc
    17641 aacgtcagcg ccgttgatcg cgagcgcggc gtctttgtga tcaaaccttc cggcgtcgat
    17701 tacagcgtca tgaccgctga cgatatggtc gtggttagca tcgaaacagg tgaagtggtt
    17761 gaaggtacga aaaagccctc ctccgacacg ccaactcacc ggctgctcta tcaggcattc
    17821 ccctccattg gcggcattgt gcatacgcac tcgcgccacg ccaccatctg ggcgcagtcg
    17881 ggtcagtcga ttccagcaac cggcaccacc cacgccgact atttctacgg caccattccc
    17941 tgcacccgca aaatgaccga cgcagaaatc aacggcgaat atgagtggga aaccggtaac
    18001 gtcatcgtag aaacctttga aaaacagggt atcgatgcag cgcaaatgcc cggcgttctg
    18061 gtccattccc acggcccgtt tgcatggggc aaaaatgccg aagatgcggt gcataacgcc
    18121 atcgtgctgg aagaggtcgc ttatatggag atattctgcc gtcagttagc gccgcagtta
    18181 ccggatatgc agcaaacgct gctggataaa cactatctgc gtaagcatgg cgcgaaggca
    18241 tattacgggc agtaatgact gtataaaacc acagccaatc aaacgaaacc aggctatact
    18301 caagcctggt tttttgatgg attttcagcg tggcgcaggc aggttttatc ttaacccgac
    18361 actggcggga caccccgcaa gggacagaag tctccttctg gctggcgacg gacaacgggc
    18421 cgttgcaggt tacgcttgca ccgcaagagt ccgtggcgtt tattcccgcc gatcaggttc
    18481 cccgcgctca gcatattttg cagggtgaac aaggctttcg cctgacaccg ctggcgttaa
    18541 aggattttca ccgccagccg gtgtatggcc tttactgtcg cgcccatcgc caattgatga
    18601 attacgaaaa gcgcctgcgt gaaggtggcg ttaccgtcta cgaggccgat gtgcgcccgc
    18661 cagaacgcta tctgatggag cggtttatca cctcaccggt gtgggtcgag ggtgatatgc
    18721 acaatggcac tatcgttaat gcccgtctga aaccgcatcc cgactatcgt ccgccgctca
    18781 agtgggtttc tatagatatt gaaaccaccc gccacggtga gctgtactgc atcggcctgg
    18841 aaggctgcgg gcagcgcatc gtttatatgc tggggtcgga gaatggcgac gcctcctcgc
    18901 ttgatttcga actggaatac gtcgccagcc gcccgcagtt gctggaaaaa ctcaacgcct
    18961 ggtttgccaa ctacgatcct gatgtgatca tcggttggaa cgtggtgcag ttcgatctgc
    19021 gaatgctgca aaaacatgcc gagcgttacc gtcttccgct gcgtcttggg cgcgataata
    19081 gcgagctgga gtggcgcgag cacggcttta aaaacggcgt cttttttgcc caggctaaag
    19141 gtcggctaat tatcgacggt atcgaggcgc tgaaatccgc gttctggaat ttctcttcat
    19201 tctcgctgga aactgtcgct caggagctat taggcgaagg aaaatctatc gataacccgt
    19261 gggatcgaat ggacgaaatt gaccgccgtt tcgccgaaga taaacctgcg ctggcaactt
    19321 ataacctgaa agattgcgag ctggtgacgc agatcttcca caaaactgaa atcatgccat
    19381 ttttactcga acgggcaacg gtgaacggcc tgccggtgga ccgacacggc ggttcggtgg
    19441 cggcatttgg tcatctctat tttccgcgaa tgcatcgcgc tggttatgtc gcgcctaatc
    19501 tcggcgaagt gccgccgcac gccagccctg gcggctacgt gatggattca cggccagggc
    19561 tttatgattc agtgctggtg ctggactata aaagcctgta cccgtcgatc atccgcacct
    19621 ttctgattga tcccgtcggg ctggtggaag gcatggcgca gcctgatcca gagcacagta
    19681 ccgaaggttt tctcgatgcc tggttctcgc gagaaaaaca ttgcctgccg gagattgtga
    19741 ctaacatctg gcacgggcgc gatgaagcca aacgccaggg taacaaaccg ctgtcgcagg
    19801 cgctgaaaat catcatgaat gccttttatg gcgtgctcgg caccaccgcc tgccgcttct
    19861 tcgatccgcg gctggcatcg tcgatcacca tgcgtggtca tcagatcatg cggcaaacca
    19921 aagcgttgat tgaagcacag ggctacgacg ttatctacgg cgataccgac tcaacgtttg
    19981 tctggctgaa aggcgcacat tcggaagaag aagcggcgaa aatcggtcgt gcactggtgc
    20041 agcacgttaa cgcctggtgg gcggaaacgc tgcaaaaaca acggctgacc agcgcattag
    20101 aactggagta tgaaacccat ttctgccgtt ttctgatgcc aaccattcgc ggagccgata
    20161 ccggcagtaa aaagcgctac gccgggctga ttcaggaggg cgataaacag cggatggtgt
    20221 ttaaagggct ggaaaccgtg cgcaccgact ggacgccgct ggcccagcag tttcagcagg
    20281 agctatacct gcgcatcttc cgcaacgagc catatcagga atatgtacgc gaaaccatcg
    20341 acaaactgat ggcgggtgaa ctggatgcgc gactggttta ccgtaaacgc cttcgccgtc
    20401 cgctgagcga gtatcagcgt aatgtgccgc ctcatgtacg cgccgctcgc cttgccgatg
    20461 aagaaaacca aaagcgtggt cgccccttgc aatatcagaa tcgcggcacc attaagtacg
    20521 tatggaccac caacggcccg gagccgctgg actaccaacg ttcaccactg gattacgaac
    20581 actatctgac ccgccagcta caacccgtgg cggagggaat actccctttt attgaggata
    20641 attttgctac acttatgacc gggcaacttg ggctattttg agcaaaaaaa gagttcgcca
    20701 gataccattt tgatgcgtga cgaatgcttt gccatccagt accatagcgc cctttccatt
    20761 cctggacctg aataacacca ctacctcata agcacggtag cgggtggtta ttgcctgcaa
    20821 ttaaagatat agagccgaac acatatgcct tttacacttg gtcaacgctg gatcagcgat
    20881 acagaaagcg aattgggact tggaaccgtt gtcgcggtgg atgcgcgaac tgtcacttta
    20941 cttttcccat ctactggtga aaaccgtctg tacgcacgca gtgattcccc cgtgacccgc
    21001 gtgatgttca accctggtga taccattacc agccatgacg gctggcagat gcaagtcgaa
    21061 gaagtaaaag aagaaaatgg cttgctgacc tatatcggta ctcgcctgga tactgaagag
    21121 tccggcgtag ccctgcgtga agttttcctt gatagcaaac tggtgttcag caaaccgcag
    21181 gaccgcctgt ttgccgggca gattgaccgt atggaccgct ttgcgctgcg ttatcgcgcg
    21241 cgtaagtatt ccagcgaaca gttccgtatg ccgtacagcg gcctgcgcgg tcagcgtacc
    21301 agcctgatcc cgcaccagct caacatcgct catgatgttg gccgccgcca cgcgccgcgc
    21361 gtcctgctgg ctgacgaagt gggtttaggg aaaaccattg aagccgggat gatcctgcat
    21421 cagcaactgc tctctggcgc tgctgaacgt gtgctgatta tcgtcccgga aaccttacag
    21481 catcagtggc tggtagaaat gctgcgccgt ttcaacctgc gctttgctct gtttgatgat
    21541 gagcgttatg ccgaagctca gcacgatgct tacaacccgt tcgacaccga acagctggtg
    21601 atttgctcgc tggattttgc ccgtcgtagc aaacagcgcc tggaacatct ctgtgaagcc
    21661 gaatgggacc tgctggtggt cgatgaagcg catcacctgg tgtggagcga agatgcgcca
    21721 agccgtgaat atcaggccat tgaacaactg gcagagcaca tgccgggcgt tctgctgctg
    21781 accgcgaccc cggaacagct ggggatggaa agccacttcg cccgtctgcg tctgctggac
    21841 ccgaaccgtt tccacgattt tgcgcagttc gttgaagagc agaaaaatta tcgtccggtt
    21901 gcggacgccg ttgccatgct gctggcaggt aacaaactga gcaatgacga actgaacatg
    21961 ctcggcgaga tgatcggcga gcaggatatc gagccgctgt tgcaggcagc aaacagcgac
    22021 agcgaagatg cccagagcgc ccgtcaggag ctggtttcga tgctgatgga tcgccacggc
    22081 accagccgcg tgctgttccg taacacgcgt aacggtgtga aaggattccc gaaacgcgag
    22141 ctgcacacca ttaagctgcc gctaccgacg cagtatcaga cggctattaa agtctccggc
    22201 attatgggcg cacgtaaaag tgcggaagat cgtgctcgcg atatgctcta cccggagcgt
    22261 atttatcagg aatttgaagg tgataacgcc acctggtgga acttcgatcc gcgcgttgag
    22321 tggctgatgg gctacctgac cagccatcgc tctcagaaag tgctggtgat ctgcgccaaa
    22381 gctgccactg cgctgcaact ggagcaggta ctgcgcgaac gtgaaggtat tcgcgctgcg
    22441 gtgttccacg aaggtatgtc gattatcgaa cgtgaccgcg ctgccgcctg gtttgccgaa
    22501 gaagacaccg gcgcacaggt actgctgtgc tcagaaatcg gttctgaagg acgtaacttc
    22561 cagttcgcca gccacatggt gatgtttgac ctgccattca acccggatct actggagcag
    22621 cgtattggtc gtctggatcg tatcggccag gcgcacgata ttcagatcca tgtgccttat
    22681 ctggagaaaa ccgctcagtc ggtgctggtg cgctggtatc acgaaggtct ggatgcattt
    22741 gagcacacct gcccgaccgg acgcactatt tacgatagcg tatacaacga tctgattaac
    22801 tatctggctt caccggatca aaccgaaggc tttgacgatc tgatcaaaaa ctgccgcgag
    22861 caacatgaag cgctgaaagc acagctggaa cagggtcgtg accgcctgct ggaaatccac
    22921 tccaacggtg gcgaaaaagc ccaggcactg gcagaaagca ttgaagagca ggatgacgat
    22981 accaacctga tcgccttcgc catgaacctg ctcgatatta tcggtatcaa tcaggacgat
    23041 cgcggcgaca acatgatcgt gctgacgccg tccgatcata tgctggtgcc ggacttccct
    23101 ggcctgtcgg aagatggcat caccatcacc tttgatcgtg aagtggcgct ggcgcgtgaa
    23161 gatgcacagt ttattacctg ggagcatccg ctgatccgca acggtctgga tctgatcctt
    23221 tctggcgata ccggtagcag cacgatttca ctgttaaaaa acaaagcgtt gccggtaggt
    23281 acgctgttgg tggaactgat ttatgtggtt gaagcccagg ctccgaagca gttgcagctc
    23341 aaccgcttcc tgccaccgac gccggtacgt atgctgctgg ataaaaacgg caacaacctg
    23401 gcggcgcagg tagagtttga aacctttaac cgccagctta acgcggttaa ccgtcacacc
    23461 ggcagcaaac tggttaacgc cgtgcagcag gatgttcacg ctatccttca actgggtgaa
    23521 gcgcagatcg agaaatctgc ccgtgcattg attgatgcag cgcgtaacga agccgacgaa
    23581 aaactgtctg ccgagctgtc tcgtctggaa gctctgcgtg cagtgaaccc gaacattcgt
    23641 gacgacgaac tgaccgccat tgagagcaac cgtcagcagg taatggaaag cctggatcag
    23701 gcaggttggc gtctggatgc cctgcgtttg atcgttgtaa cgcatcagta acggagccga
    23761 aaatggggat ggaaaactac aatccaccgc aggaaccctg gttggttatc ctgtatcagg
    23821 atgaccacat tatggtggtt aacaagccga gcggtttgtt gtctgtgccg gggcgtctgg
    23881 aagagcacaa agacagcgtg atgacgcgca ttcagcgtga ttatccgcag gcagaatcgg
    23941 tgcatcgtct ggatatggct accagcggcg tgattgtagt ggcgctgacc aaagccgcgg
    24001 agcgggagtt aaaacgccag ttccgcgagc gcgagccgaa aaagcagtat gtggcccgcg
    24061 tctgggggca tccatcccct gcggaaggtc tggtggatct gccgctgatt tgcgactggc
    24121 caaaccgccc gaaacagaaa gtctgttacg aaacgggtaa acctgcgcag acggaatatg
    24181 aagtggtgga gtatgcggcg gataacacgg caagagtggt gttaaaaccg attactgggc
    24241 gttcgcatca attgcgtgtg catatgctgg cgctggggca tccgattctc ggcgatcgtt
    24301 tttatgcatc accagaagcg agagcgatgg caccgcgttt gttgctacat gcagagatgt
    24361 tgacgattac ccatccggcg tatggcaata gtatgacgtt taaagcgcca gcggattttt
    24421 aatagtcacg ctggcgcagt tcggtaggcg gataaggcgt tcacgccgaa tccggcaatt
    24481 gtgcgccgat tgcctgatgc gacgcgggcc gcgtcttatc aggcctacag tttaaaactt
    24541 atttaaaccc tttctgctgc tttatcagct catatgcctg ctgaatttcc tgcgctttct
    24601 gcttcgccat ctccatcatc tcaggcggca aacctttcgc caccagctta tcgggatggt
    24661 gttcactcat cagcttacgg taggctcgtt taatggtggt cgcatcatcc gtcggcttca
    24721 cacccagcac attacaggca tcttccagcg tcgggccacg ctgcgcttgc tgccagttac
    24781 caccgccaga ttgctgctga taaccgccgc caaactgtgc accgccctgc atcatgcgca
    24841 aaaactggtc aaactgggcg cgggagatcc ctaattcttc tgcaatgaca tacagcaccg
    24901 cccgttcatt cgggtgcagt gaaccatcag caaacgccgc ctgaatctgg atctccagaa
    24961 acatacgaat taagtcaaaa cgaccaaagc agacactgcg aaactggcgc atcttttcgc
    25021 gcagcgggta attgtctgat tttcccaccc ggaacgcgtt ttgcgccgca gtacgggaag
    25081 cgccatgaag gttcattcgg tccatcagct ggctggcgat atgaatatca gcctccgtga
    25141 cgcgaccttt ggatttggtt aaatgcccca tcacttcaaa agtggtggca aaaaacagcg
    25201 cctgacgctc acgctggttg gcgaaccacg ccattttacg gctacgggct ttatcaaaca
    25261 tatggccaat taacaggcct aacactacgc cccaaaagcc gccgcccatc agtaaggcca
    25321 cggccacgcc aatgattttt ccccaatact gcatatattc cccaaatcga cacacggata
    25381 tcagggctat ctcccacaat ataaaggtgc ttttaccgtt ttccggctgc agtcaattgt
    25441 gggacatcgc ctataatttg cattatcata cctgtcattc aatgccgtgc ctaacaccac
    25501 tgacgctatt cggacaggat taacactagc gtagagatga cgagtacgtt agtctctgac
    25561 cgtttgtcac gcgcaacgtt accgatgatg gaacaataaa atcaacgtat gaaaaaacgt
    25621 atccccactc tcctggccac catgattgcc accgcccttt atagtcaaca gggactggca
    25681 gccgacctcg cctcacagtg catgttgggc gtgccaagct atgaccgtcc tctggtacag
    25741 ggcgatacca atgacttacc cgtgactatc aatgctgacc acgcgaaagg ggactacccg
    25801 gatgacgccg tgtttactgg cagcgtggat atcatgcagg gtaacagccg tctgcaggcc
    25861 gacgaagtgc agctccatca aaaagaggca ccaggacaac cggagccggt acgaaccgtt
    25921 gatgcgctcg gtaatgtcca ttacgacgat aaccaggtga tcctcaaagg gccgaaaggc
    25981 tgggcgaatc tgaacaccaa agataccaac gtctgggaag gtgattacca gatggtgggt
    26041 cgccagggcc gcggtaaagc ggacctgatg aaacaacgtg gtgaaaaccg ctataccatt
    26101 ctggataacg gtagctttac ctcctgtctg ccgggttctg acacctggag cgtggtaggt
    26161 agcgaaatta ttcatgaccg cgaagaacaa gttgcggaga tctggaacgc ccgctttaag
    26221 gtgggtccag taccgatctt ttatagcccc tatttgcagt tgccggtggg tgacaaacgt
    26281 cgctctggtt tcttgatccc gaacgccaag tacaccacca ccaactactt tgagttctac
    26341 ctgccatatt actggaacat cgcgccaaat atggatgcca ccatcacgcc gcattatatg
    26401 catcgtcgtg gcaacatcat gtgggagaac gaattccgct acctctccca ggcgggcgct
    26461 ggcttgatgg aactggacta tctgccttca gataaagtct atgaagatga acacccgaac
    26521 gatgacagtt cacgtcgttg gttgttctac tggcaacact ccggggtcat ggatcaagtg
    26581 tggcgtttca acgtagacta caccaaggtc agcgatccta gctacttcaa tgatttcgat
    26641 aacaagtacg gttccagtac tgacggctac gcaacgcaaa aattcagcgt tggctatgcg
    26701 gtgcaaaact tcaatgccac cgtttcaacc aagcagttcc aggtctttag cgagcagaac
    26761 accagtagct actcggcaga gccgcagtta gacgttaact actaccagaa tgatgttggt
    26821 ccgtttgata cgcgtattta cggccaggca gtgcactttg ttaacaccag agacgacatg
    26881 cctgaagcaa cccgtgttca cctggaaccg accatcaatt tgccgctctc taataactgg
    26941 ggcagcatca ataccgaagc gaagttgctg gcaacccatt atcagcaaac caatcttgac
    27001 tggtataact ccagaaacac gaccaagctg gacgaatccg ttaaccgcgt tatgccgcaa
    27061 ttcaaagttg acggcaaaat ggtctttgaa cgcgatatgg aaatgctggc tccgggttat
    27121 acccaaacgc tggaaccgcg cgcgcagtat ttgtacgtgc cgtatcgcga tcagagcgac
    27181 atctataact acgactcgtc tctactgcaa tctgactact ctggcctgtt ccgggaccgg
    27241 acttacggcg gtcttgaccg tattgcctcc gctaaccagg tgacgaccgg tgtcacatct
    27301 cgcatatatg atgatgctgc cgttgaacat tttaatattt ccgttggtca aatctactat
    27361 ttcacggagt ctcgcactgg cgatgacaac ataacatggg agaatgacga caaaacgggc
    27421 tcactggtgt gggcaggcga tacttactgg cgtatctccg agcgttgggg attgcgtggc
    27481 gggattcagt acgatacacg tctggataac gtagcgacca gtaactccag cattgaatac
    27541 cgtcgggatg aagaccgtct ggtacagctg aattaccgtt acgccagccc ggaatatatt
    27601 caggctacgc tgcctaagta ctattccact gctgagcaat ataagaatgg tatttcgcag
    27661 gtaggtgctg tcgccagctg gccaattgcc gatcgttggt ccattgttgg ggcctactac
    27721 tacgacacca atgcgaacaa gcaagccgac tctatgttag gtgtgcaata cagctcctgc
    27781 tgctatgcaa ttcgcgtcgg ttacgagcgg aagctgaacg gttgggataa cgataaacaa
    27841 catgcggtat atgacaacgc aatcggcttt aacatcgaac ttcgcggcct gagctccaac
    27901 tacggtctgg gtacgcaaga gatgctgcgt tcgaacattc tgccgtatca aaacactttg
    27961 tgatttgttg atttaccacg taatccgcag tgcggttaat tgaaatggaa aaagtatgaa
    28021 gaactggaaa acgctgcttc tcggtatcgc catgatcgcg aataccagtt tcgctgcccc
    28081 ccaggtagtc gataaagtcg cagccgtcgt caataacggc gtcgtgctgg aaagcgacgt
    28141 tgatggatta atgcagtcgg taaaactgaa cgctgcgcag gcaaggcagc agcttcctga
    28201 tgacgcgacg ctgcgccacc aaatcatgga acgtttgatc atggatcaaa tcatcctgca
    28261 gatggggcag aaaatgggag tgaaaatctc cgatgagcag ctggatcagg cgattgctaa
    28321 catcgcgaaa cagaacaaca tgacgctgga tcagatgcgc agccgtctgg cttacgatgg
    28381 tctgaactac aacacctatc gtaaccagat ccgcaaagag atgattatct ctgaagtgcg
    28441 taacaacgag gtgcgtcgtc gcatcaccat cctgccgcag gaagtcgaat ccctggcgca
    28501 gcaggtgggt aaccaaaacg acgccagcac tgagctgaac ctgagccaca tcctgatccc
    28561 gctgccggaa aacccgactt ctgatcaggt gaacgaagcg gaaagccagg cgcgcgccat
    28621 tgtcgatcag gcgcgtaacg gcgctgattt cggtaagctg gcgattgctc attctgccga
    28681 ccagcaggcg ctgaacggcg gccagatggg ctggggccgt attcaggagt tgccgggtat
    28741 cttcgcccag gcattaagca ccgcgaagaa aggcgacatt gttggcccga ttcgttccgg
    28801 cgttggcttc catattctga aagttaacga cctgcgcggc gaaagcaaaa atatctcggt
    28861 gaccgaagtt catgctcgcc atattctgct gaaaccgtcg ccgatcatga ctgacgaaca
    28921 ggcccgtgtg aaactggaac agattgctgc cgatatcaag agtggtaaaa cgacttttgc
    28981 tgccgcagcg aaagagttct ctcaggatcc aggctctgct aaccagggcg gtgatctcgg
    29041 ctgggctaca ccagatattt tcgatccggc cttccgtgac gccctgaccc gcctgaacaa
    29101 aggtcaaatg agtgcaccgg ttcactcttc attcggctgg catttaatcg aactgctgga
    29161 tacccgtaat gtcgataaaa ccgacgctgc gcagaaggat cgtgcatacc gcatgctgat
    29221 gaaccgtaag ttctcggaag aagcagcaag ctggatgcag gaacaacgcg ccagcgccta
    29281 cgttaaaatc ctgagcaact aatggttaaa acccaacgtg ttgtgatcac tcccggcgag
    29341 cccgccggga ttggcccgga cttagttgtc cagcttgcac agcgtgagtg gccggtcgaa
    29401 ctggttgttt gtgccgatgc cactctcctt accgaccggg cagcgatgct cggtttgccg
    29461 ctcaccctcc gcccttattc ccccaactcc cctgcacaac cgcaaactgc gggcacatta
    29521 acgctacttc ctgtcgcgct acgcgaatct gtcactgcgg ggcagttagc gattgaaaat
    29581 gggcattacg tggtggagac gctggcgcga gcgtgtgatg gctgtctgaa cggtgaattt
    29641 gctgcgctga tcacaggccc cgtgcataaa ggcgtcatta acgacgcagg tattccgttt
    29701 actggtcata ccgagttttt cgaagagcgc tcgcaggcga aaaaagtggt gatgatgctg
    29761 gcgaccgaag aacttcgcgt ggcgctggca acgacgcatt taccgctgcg cgatatcgca
    29821 gatgctatca cccctgcact tttgcacgaa gtgattgcta ttttgcatca cgatttgcgt
    29881 acaaaatttg gtattgccga accgcgcatt ctggtctgcg ggctgaatcc gcacgcgggc
    29941 gaaggcggtc atatgggtac ggaagagata gacaccatta ttccggtgct cgacgagctg
    30001 cgggcgcagg ggatgatact caacgggccg ctgcctgccg ataccctgtt tcagccgaaa
    30061 tatctcgata acgccgacgc cgtgctggcg atgtaccacg atcagggtct tcccgtgcta
    30121 aaataccagg gcttcgggcg cggtgtgaac attacgctgg gcctgccctt tattcgcaca
    30181 tcagtggacc acggcaccgc gcttgaactg gcgggacgtg gcgaagccga tgtcggcagt
    30241 tttattacgg cgcttaatct cgccatcaaa atgattgtta acacccaatg aataatcgag
    30301 tccaccaggg ccacttagcc cgtaaacgct tcgggcaaaa ctttctcaac gatcagttcg
    30361 tgatcgacag cattgtttct gccattaacc cgcaaaaggg ccaggcaatg gtcgaaatcg
    30421 gccccggtct ggcggcattg accgagccgg tcggcgaacg tctggaccag ctgacggtca
    30481 tcgaacttga ccgcgatctg gcggcacgtc tgcaaacgca tccattctta ggcccgaaac
    30541 tgacgattta tcagcaggat gcgatgacct ttaactttga cgaactggcc gagaaaatgg
    30601 gtcagccgct gcgtgttttc ggcaacctgc cttataacat ctccacgccg ttgatgttcc
    30661 atctgtttag ctatactgat gccattgccg acatgcactt tatgttgcaa aaagaggtgg
    30721 tgaatcgtct ggttgcagga ccgaacagca aagcgtatgg tcgattaagc gtcatggcgc
    30781 aatactattg caacgtgatc ccggtactgg aagttccgcc gtcagccttt acaccaccac
    30841 ccaaagtgga ttccgccgtc gtgcgcctgg ttcctcatgc aacgatgcct cacccggtta
    30901 aagatgttcg tgtgttgagc cgcatcacca ccgaagcctt taaccagcgt cgtaaaacca
    30961 ttcgtaacag cctcggcaac ctgtttagcg tcgaggtgtt aacgggaatg gggatcgacc
    31021 cggcgatgcg agcggaaaat atctctgtcg cgcaatattg ccagatggcg aactatctgg
    31081 cggagaacgc gcctttgcag gagagttaac gatgatcaat tcgccccgag tgtgtattca
    31141 ggttcaaagc gtctacattg aggcacaatc ttcacctgat aatgaacgtt acgtttttgc
    31201 ttataccgta accatacgca atctggggcg agcgccagtg cagttgttgg ggcgttactg
    31261 gctgatcacc aatggcaatg gccgtgaaac cgaagtccag ggcgaaggag tggttggcgt
    31321 ccagccactt atcgcgcctg gcgaagagta ccagtacacc agcggtgcaa tcattgaaac
    31381 cccgctgggc accatgcagg gtcactacga aatgatcgat gaaaatggcg tccctttcag
    31441 catcgacatt cccgtattcc gactcgccgt tcccacactc attcattaaa agaatatggc
    31501 gacatacctt attggcgacg ttcatggttg ttacgatgaa ctgatcgcat tgctgcataa
    31561 agtagaattt acccctggga aagataccct ctggctgacg ggcgatctgg tcgcgcgcgg
    31621 cccgggttcg ctggatgttc tgcgctatgt gaaatcctta ggcgacagcg tacgtctggt
    31681 gctgggcaat cacgatctgc atctgctggc ggtatttgcc gggatcagcc gcaataaacc
    31741 gaaagatcgc ctgacaccgc tgctggaagc gccggatgcc gacgagctgc ttaactggct
    31801 gcgtcgccag cctttgctgc aaatcgacga agagaaaaag ttggtgatgg cccacgcagg
    31861 gatcacgccg cagtgggatc tacagaccgc caaagagtgc gcgcgcgatg tagaagcggt
    31921 gctatcgagt gactcctatc ccttctttct cgacgctatg tacggcgata tgccaaataa
    31981 ctggtcaccg gaattgcggg ggctgggaag actgcgtttt atcaccaacg cctttacccg
    32041 tatgcgtttt tgcttcccga acggtcaact ggatatgtac agcaaagaat cgccggaaga
    32101 ggcccctgcc ccactgaaac cgtggtttgc gattcctggc cctgtcgctg aagaatacag
    32161 catcgccttt ggtcactggg catcgctgga gggcaaaggt acgccggaag gtatatacgc
    32221 gctggatacc ggctgctgct ggggtggtac attaacctgc ctgcgctggg aagataaaca
    32281 gtattttgtc cagccgtcga accggcataa ggatttgggc gaagcggcgg cgtcttaaac
    32341 acagcctgat ataggaaggc cggataagac gcgaccggcg tcgcatccgg cactagccgt
    32401 aaattctata caaaattacc gccgctccag aatctcaaag caatagctgt gagagttctg
    32461 cgcatcagca tcgtggaatt cgctgaatac cgattcccag tcatccggct cgtaatccgg
    32521 gaaatgggtg tcgccttcca cttctgcgtc gatatgcgtc agatacagtt tctgcgcttt
    32581 tggcaggaac tgctcataaa cgcgaccgcc gccaatcacc atgatttctg gtacgtcacc
    32641 acacgccgcg atggcttcat ccaccgactt cacccacgtt acgcgatcgt ccgtacccgg
    32701 ttgactgctg aggataatat ttttgcgtcc tggcaacgga cgaccgattg attcccaggt
    32761 atggcggccc ataatcacgg gtttatttaa ggtgttgcgt ttaaaccagg cgagatcggc
    32821 aggcaggttc cacggcatgg cgttttccat gccgataacg cgatctaccg ctaacgccgc
    32881 aatcagactg atcattgaga tttcccgata aaaaaaattg tcgccactat acgtaaagcg
    32941 taaaccgtcg tcgactggtg cgaggatgat gttgaggaaa attttatatt ctgctggcga
    33001 gtccacgctc tctccctgga ctcgccgcat tacaatgaaa caaaaacaaa cagttagctg
    33061 taaagtgtga tttatgtcac tctttattag gatgagggtt tcgtttccgg ttcatccgcc
    33121 atgttgccgg tatgtttacc ttcttcggtt ccctgccagc catgtcgttg aattaatgac
    33181 agatgttcgc ggtcctcggt aatgatctca cttaacatcg cgctggtgcg tttatagacc
    33241 gccgcgcggg ctttggtgtc gttctcaacc attgccatct cttccaccat ctgaatatta
    33301 aagcggcgga acacatcggc acgttctcgc gcttcatacg gccccagacc taaactttcc
    33361 agtgccagac gcccggtttt cagcgcacct tcgaaggttt cacgctccgg cttttcaacg
    33421 cctgcctgac gcaaacgaat gtagtggtcg acatcgcggg cgcgggcaat aatctgcaaa
    33481 tgcgggaagt gttctttcac catctctgtc agttgcaggt tggtttgcgg atcgtcgatg
    33541 gcgttaatca gcacttccgc tttcgccgct cccgcagatt ccagtaaatc catccgcgtg
    33601 gcatcgccat aaaacacttt cataccaaat ttacgcaagg tttcgatatg gtccggatcg
    33661 tgatcgagca ccaccatttt caccccgctg gagagcagta aacgtccggt gatctgccca
    33721 aaacgaccga atccggcaat gattacccgc ggctgttctt cgtcgatctc atcggcttca
    33781 cgcgcctctt cagtagaaga ttgctcaagg cgattgagga tcaccagcag aatcggcgtt
    33841 gccgccatcg acagcgccac cgccagggtc agcgatttcg cccactccgg ctccagcaca
    33901 ttcgccatct gcgccgcgcc aaataccaca aaggcaaact cactgccctg ccctaacaac
    33961 accgcaaacc aacgacgctg tttatttggc acttgcaacg gtcgggcaat cagccacagc
    34021 atggcgattt tgatgatgag gaaaccgagc agcaaaatga caatgcgcaa tgggttttca
    34081 agcagcgtgc caaagtctat cgacatgcca acaccgatga aaaacagccc caacagcaaa
    34141 cctttaaagg gttcgatatc gctctccagc gcatgacggt attccgagct tgccagcagt
    34201 acgcccgcca gaaacgcgcc catcgccatc gacaagccga cctcttccag cagcaaacca
    34261 aagccaaaca cgaggaataa cgccacggca ctaaacactt cccgcaagcc agagcgggct
    34321 acaaaacgca gcgccggacg cgtgacatag cgccccagca ataccaccag caccagcgca
    34381 cccgccactt ttaacgccga gagagcaaat gcgcccatcg tcgtcgaggc actgctcgtt
    34441 gccagtagcg gaatcatcgc caccagcggg atcgccgcga tatcctggaa cagcagcacc
    34501 gcaaaggcac tgcgacccat ttgcgtcacc atcagattgc gttcattcat cgcctgcatg
    34561 gcaatcgccg tagaggagag cgccagcgtc atgccgatca attccgcgac ctgccagcgc
    34621 agcccaagta acatgcagaa cagccccagc aggccgccgc aaatcaccat ctgcaatgcg
    34681 ccaccgccga acactgccgc acgcagcttc cacagccttt gtggatcgag ttcgaggccg
    34741 ataataaaca gcatcagcac caccccaatc tcggcaaagt gcagaataga ttcggcatcg
    34801 gtcaccagtc gcagccccca cgggccaata atgcagccgg cgatcaggta gccaagtacc
    34861 gatcccagac caagacgtac cgcaatgggt acaatcagcg ctgccgaacc gagataaatc
    34921 agcgcctgaa tcagcgtatg gctatccatg atgggcctcc tgccattcca gcagacgttg
    34981 cttatagtga cgcgcctgcc cttcgagggt ttcgtcgtca caaataaagg tgcagtgcat
    35041 ggcaaacggt ggcagccagt tcagcccgca gtagattgcc gtcgcctgta gcggctgcga
    35101 cagcacatca aagcccggat gcgcaccaat ttcaaaatgg ctttccccgc cgccggtcgt
    35161 caccgcccac agcaaatgtt tgccatgcag cgccttgccg ccgtgaccgt aagcccagcc
    35221 gtgcgacaaa actttatcga tccaaagttt aagaagcgga ggaatgctgt accactgcat
    35281 cggatgctgc cagacgatca gatcggcgcg agacagcgcc tcctgctcgg cggcaatatc
    35341 gatattgaag tcaggataga gttgataaag agagcgaatt tcgacgcctt ccagcgtcct
    35401 tgcctgttca agcatccgtt tattcgcatg ggaatgatgc ggatacggat gcgcataaat
    35461 tataagaatc ataggtagcc cgcgtgatta cgcctttgtt ttcccacaaa gtgtagtcat
    35521 atattcacgc ggcttatagt caataatatt gattcagaaa agagagaaat ctgaacaatt
    35581 taccccattc tctgcccgcg gatcgtcata ttgctggttt gcgccaatga catccctcga
    35641 tgtctccggg gcaaacgcta cggaaatcaa caagccaaac agcgagatac ccgcccccat
    35701 tagcatcgtg ttactgatac cgtaattatt gataaagatc ggcagtgccc aggtcgaaac
    35761 aatggtgcca atacggctta aggacataat cacgcccacg gcagaggcgc ggatatctgt
    35821 cgggaagagt tcattaggat agagccactg caaattaccc ggcccgccag agaaaaaggc
    35881 atacaccgca aaggccatca ctaccagcca gatccccata tccgggatca gccccaaaac
    35941 cgccagcgcc agcgtcatca tggcaaagct gccaatcaac aatggacgcc gtccggcagt
    36001 gtttaaccac agcatcggcg gaatacagcc gagcataaag aacaggctaa tcaccacgtt
    36061 ccccagcgcc gcgtttttgc caacacccaa tcccaacaaa ccaacgattt gcgggccaaa
    36121 ggtgtaaatg gcgaacattg ggatcacctg gcaggtccag atggcggcaa caaacagaac
    36181 aaaaggaaaa tggcggcgat taaacagatc gcgaaaacgg gtttgctgcg gctgctcttc
    36241 atcgaaagcc accggttcgc caaacagttt tatcatcatc tcttcgcact cttttactcg
    36301 ccctttgcgt aataaccagc ggggagattc aggcagttcg aatcgaccaa tcaaaatcaa
    36361 caaacagggg atcgccgcgc tacccagcat ccagcgccag ccgccttcca catcataaag
    36421 ccagtagccg accagatcgg cgcaggtcgc gccgacatac cacatggcgg cgataaagct
    36481 gatggaaaat gcccgctgac gggtactgga gaactcggtg atcattgagg tggcgatggg
    36541 ataatcggca ccgatgacaa tgccgataag tacccgcatc accaacagtt cgacggggga
    36601 tgaaacaaac atcgtcgcca ccgatatcac gccgatgacg atgatatcaa tgaggaacat
    36661 tttgcgccgt ccgactttat cggaaatata gccaaacagc gatgtgccaa cgaacagccc
    36721 ggcgagcgtt cccgcgccca acaagccaat ccagtcagcg tccagtttta gcgccggagt
    36781 cagttgctcc agcgccacgc caatcattac cagtaca
//
LOCUS       DAJVUP010000021        36531 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.021, whole genome shotgun sequence.
ACCESSION   DAJVUP010000021 DAJVUP010000000
VERSION     DAJVUP010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36531
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.021"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..896
                     /locus_tag="OQQ75_000989"
     CDS             <1..896
                     /locus_tag="OQQ75_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1975398.1"
                     /translation="DIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQ
                     IGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNTY
                     PTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENL
                     TISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINP
                     TIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIR
                     NHRYTATMLQHIAEDRDGTNH"
     gene            complement(893..2371)
                     /gene="scpC"
                     /locus_tag="OQQ75_000990"
     CDS             complement(893..2371)
                     /gene="scpC"
                     /locus_tag="OQQ75_000990"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA:succinate CoA transferase"
                     /protein_id="HCS1975399.1"
                     /translation="METQWTRMTADEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARR
                     ANEQHEAKKPYQIRLLTGASISAAADDVLSDADAVSWRAPYQTSSGLRKKINQGAVSF
                     VDLHLSEVAQMVNYGFFGDIDVAVIEASALAPDGRVWLTSGIGNAPTWLLRAKKVIIE
                     LNHYHDPRVAELADIVIPGAPPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVVETNLPD
                     AGNMLDKQNPMCQQIADNVVTFLLQEMAHGRIPPEFLPLQSGVGNINNAVMARLGENP
                     EIPPFMMYSEVLQESVVHLLETDKISGASASSLTISADSLRKIYDNMDYFASRIVLRP
                     QEISNNPEIIRRLGVIALNVGLEFDIYGHANSTHVAGVDLMNGIGGSGDFERNAYLSI
                     FMAPSIAKEGKISTVVPMCSHVDHSEHSVKVIITEQGIADLRGLSPLQRARTIIDNCA
                     HPMYRDYLHRYLENAPGGHIHHDLSHVFDLHRNLIATGSMLG"
     gene            complement(2395..3180)
                     /gene="scpB"
                     /locus_tag="OQQ75_000991"
     CDS             complement(2395..3180)
                     /gene="scpB"
                     /locus_tag="OQQ75_000991"
                     /EC_number="7.2.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA decarboxylase"
                     /protein_id="HCS1975400.1"
                     /translation="MSYQYVNVATINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN
                     RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISM
                     VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL
                     IFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGE
                     AHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH"
     gene            complement(3191..4186)
                     /gene="meaB"
                     /locus_tag="OQQ75_000992"
     CDS             complement(3191..4186)
                     /gene="meaB"
                     /locus_tag="OQQ75_000992"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HCS1975401.1"
                     /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL
                     DAIMPYCGNTLRLGVTGTPSAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL
                     GDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS
                     ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE
                     SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASGRLQQVRQQQSVE
                     WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD"
     gene            complement(4179..6323)
                     /gene="scpA"
                     /locus_tag="OQQ75_000993"
                     /pseudo
     CDS             complement(4179..6323)
                     /gene="scpA"
                     /locus_tag="OQQ75_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417392.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
     gene            complement(6527..7420)
                     /gene="argP"
                     /locus_tag="OQQ75_000994"
     CDS             complement(6527..7420)
                     /gene="argP"
                     /locus_tag="OQQ75_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator ArgP"
                     /protein_id="HCS1975402.1"
                     /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN
                     MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL
                     ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG
                     ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC
                     HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES
                     RMMRKVTDALLDYGHKVLRQD"
     gene            7803..8462
                     /gene="rpiA"
                     /locus_tag="OQQ75_000995"
     CDS             7803..8462
                     /gene="rpiA"
                     /locus_tag="OQQ75_000995"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HCS1975403.1"
                     /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG
                     QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR
                     EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
                     VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
                     K"
     gene            8717..9949
                     /gene="serA"
                     /locus_tag="OQQ75_000996"
     CDS             8717..9949
                     /gene="serA"
                     /locus_tag="OQQ75_000996"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS1975404.1"
                     /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD
                     EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF
                     NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG
                     HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK
                     NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP
                     FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL
                     HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK
                     ALQAMKAIPGTIRARLLY"
     gene            10178..10237
                     /gene="ibsC"
                     /locus_tag="OQQ75_000997"
     CDS             10178..10237
                     /gene="ibsC"
                     /locus_tag="OQQ75_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsC"
                     /protein_id="HCS1975405.1"
                     /translation="MMRLVIILIVLLLISFGAY"
     gene            10570..10629
                     /locus_tag="OQQ75_000998"
     CDS             10570..10629
                     /locus_tag="OQQ75_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1975406.1"
                     /translation="MMRLAIILIVLLLISFPAY"
     gene            complement(10730..11332)
                     /locus_tag="OQQ75_000999"
     CDS             complement(10730..11332)
                     /locus_tag="OQQ75_000999"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HCS1975407.1"
                     /translation="MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQQEMGQQAATRMM
                     TYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQ
                     SELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQ
                     HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW"
     gene            complement(11353..11536)
                     /gene="ssrS"
                     /locus_tag="OQQ75_001000"
     ncRNA           complement(11353..11536)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="OQQ75_001000"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(11578..11907)
                     /gene="zapA"
                     /locus_tag="OQQ75_001001"
     CDS             complement(11578..11907)
                     /gene="zapA"
                     /locus_tag="OQQ75_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HCS1975408.1"
                     /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER
                     TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE
                     KTNQNFE"
     gene            12075..12653
                     /gene="ygfB"
                     /locus_tag="OQQ75_001002"
     CDS             12075..12653
                     /gene="ygfB"
                     /locus_tag="OQQ75_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YgfB"
                     /protein_id="HCS1975409.1"
                     /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS
                     SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA
                     DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE
                     IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH"
     gene            12679..14004
                     /gene="pepP"
                     /locus_tag="OQQ75_001003"
     CDS             12679..14004
                     /gene="pepP"
                     /locus_tag="OQQ75_001003"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HCS1975410.1"
                     /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY
                     RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK
                     LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIMNSALEKLRKGSRQNLTAP
                     ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH
                     EFNRHGARYPSYNTIVGSGENGCILHYTENESELRDGDLVLIDAGCEYKGYAGDITRT
                     FPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG
                     DVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPD
                     AEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMAAARKQ"
     gene            14001..15179
                     /gene="ubiH"
                     /locus_tag="OQQ75_001004"
                     /gene_synonym="visB"
     CDS             14001..15179
                     /gene="ubiH"
                     /locus_tag="OQQ75_001004"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HCS1975411.1"
                     /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG
                     FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL
                     GQVVELHNVGQRLFALLRKAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVA
                     ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG
                     RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGKITHAGKRSAYPLALTRAARA
                     ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAHERGEDIGDYGILCRYQQ
                     RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR
                     "
     gene            15202..16404
                     /gene="ubiI"
                     /locus_tag="OQQ75_001005"
                     /gene_synonym="visC"
     CDS             15202..16404
                     /gene="ubiI"
                     /locus_tag="OQQ75_001005"
                     /gene_synonym="visC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent 2-octaprenylphenol hydroxylase"
                     /protein_id="HCS1975412.1"
                     /translation="MQCVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADA
                     PPQLRVSAINAASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYS
                     HLGHIVENSVIHYALWNKAQQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLV
                     IGADGANSWLRNKADISLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS
                     DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA
                     RQFAAHRLVLVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR
                     YERSRKHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL
                     NDLPEWLR"
     gene            complement(16478..16561)
                     /locus_tag="OQQ75_001006"
     CDS             complement(16478..16561)
                     /locus_tag="OQQ75_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975413.1"
                     /translation="MSKNTKSKNNDIRKYNAKTEVKLVYFK"
     gene            16851..17945
                     /gene="gcvT"
                     /locus_tag="OQQ75_001007"
     CDS             16851..17945
                     /gene="gcvT"
                     /locus_tag="OQQ75_001007"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HCS1975414.1"
                     /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA
                     GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY
                     YFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF
                     NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP
                     CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH
                     GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI
                     GETAIVQIRNREMPVKVTKPVFVRNGKAVA"
     gene            17969..18358
                     /gene="gcvH"
                     /locus_tag="OQQ75_001008"
     CDS             17969..18358
                     /gene="gcvH"
                     /locus_tag="OQQ75_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HCS1975415.1"
                     /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD
                     LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI
                     FKIKASDESELESLLDATAYEALLEDE"
     gene            18477..21350
                     /gene="gcvP"
                     /locus_tag="OQQ75_001009"
     CDS             18477..21350
                     /gene="gcvP"
                     /locus_tag="OQQ75_001009"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HCS1975416.1"
                     /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ
                     IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM
                     LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM
                     AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ
                     QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP
                     MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI
                     CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC
                     VEVADKAGVLARAEAAEINLRSDILNAVGITLDETTTRENVMQLFSVLLGDNHGLEID
                     TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP
                     LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC
                     MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC
                     DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG
                     ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV
                     QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD
                     AFPVLYTGRDGRVAHECILDIRPLKEETSISELDIAKRLIDYGFHAPTMSFPVAGTLM
                     VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP
                     YSHEVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ"
     gene            21616..22359
                     /locus_tag="OQQ75_001010"
                     /pseudo
     CDS             21616..22359
                     /locus_tag="OQQ75_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417378.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            complement(22416..23849)
                     /gene="bglA"
                     /locus_tag="OQQ75_001011"
     CDS             complement(22416..23849)
                     /gene="bglA"
                     /locus_tag="OQQ75_001011"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase BglA"
                     /protein_id="HCS1975417.1"
                     /translation="MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHG
                     VPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA
                     QPNEEGLKFYDSLFDELLKYNIEPVITLSHFEIPLHLVQQYGSWTNRKVVDFFVRFAE
                     VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFV
                     ASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGY
                     YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMINAVKAEGGTGDAISGFE
                     GSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSIND
                     DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD
                     GTGDMSRSRKKSFNWYKEVIASNGEKL"
     gene            23894..24205
                     /locus_tag="OQQ75_001012"
     CDS             23894..24205
                     /locus_tag="OQQ75_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HCS1975418.1"
                     /translation="MQPNDITFSQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRF
                     EDDDYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELIKVIADIYPGQTQFYVIEFKC
                     L"
     gene            24369..25028
                     /locus_tag="OQQ75_001013"
     CDS             24369..25028
                     /locus_tag="OQQ75_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HCS1975419.1"
                     /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL
                     NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF
                     LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA
                     VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSMCHFLAIYLYIGQ
                     A"
     gene            complement(25224..26204)
                     /gene="ygfZ"
                     /locus_tag="OQQ75_001014"
     CDS             complement(25224..26204)
                     /gene="ygfZ"
                     /locus_tag="OQQ75_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-modifying protein YgfZ"
                     /protein_id="HCS1975420.1"
                     /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ
                     VTADVSQMTENQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA
                     VFSKVTIAADDERVLLGVAGFQARAALANLFSELPSREKQVVKEGATTLLWFEHPAER
                     FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA
                     LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT
                     GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE"
     gene            26447..26713
                     /gene="sdhE"
                     /locus_tag="OQQ75_001015"
     CDS             26447..26713
                     /gene="sdhE"
                     /locus_tag="OQQ75_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD assembly factor SdhE"
                     /protein_id="HCS1975421.1"
                     /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI
                     RLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRERGPVAI"
     gene            26694..27101
                     /locus_tag="OQQ75_001016"
     CDS             26694..27101
                     /locus_tag="OQQ75_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin CptA"
                     /protein_id="HCS1975422.1"
                     /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV
                     LLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD
                     GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR"
     gene            complement(27141..27662)
                     /gene="fldB"
                     /locus_tag="OQQ75_001017"
     CDS             complement(27141..27662)
                     /gene="fldB"
                     /locus_tag="OQQ75_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldB"
                     /protein_id="HCS1975423.1"
                     /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME
                     QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALG
                     MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW
                     CEQILNEMAEHYA"
     gene            27774..28670
                     /gene="xerD"
                     /locus_tag="OQQ75_001018"
     CDS             27774..28670
                     /gene="xerD"
                     /locus_tag="OQQ75_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HCS1975424.1"
                     /translation="MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG
                     LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS
                     PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
                     SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM
                     TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT
                     QIYTHVATERLRQLHQQHHPRA"
     gene            28695..29405
                     /gene="dsbC"
                     /locus_tag="OQQ75_001019"
     CDS             28695..29405
                     /gene="dsbC"
                     /locus_tag="OQQ75_001019"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HCS1975425.1"
                     /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV
                     AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGAAPVNVTNKMLLKQLNALEKEMIVYK
                     APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLESQAEQQMKAIW
                     CAKDKNKAFDDVMAGKAATPASCDIDIADHYALGVQLGVSGTPAIVLSNGTLVPGYQP
                     PKEMKEFLDEHQKMTSGN"
     gene            29411..31144
                     /gene="recJ"
                     /locus_tag="OQQ75_001020"
     CDS             29411..31144
                     /gene="recJ"
                     /locus_tag="OQQ75_001020"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HCS1975426.1"
                     /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS
                     VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN
                     IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD
                     HHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIA
                     IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ
                     KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ
                     GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG
                     DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFG
                     ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ
                     QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS
                     LQIIIDNIWPI"
     gene            31235..32333
                     /gene="prfB"
                     /locus_tag="OQQ75_001021"
     CDS             join(31235..31309,31311..32333)
                     /gene="prfB"
                     /locus_tag="OQQ75_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311790.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HCS1975427.1"
                     /translation="MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP
                     DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAE
                     LDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG
                     FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS
                     SAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN
                     DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DLRTGVETRNTQAVLDGSLDQFIEASLKAGL"
     gene            32343..33860
                     /gene="lysS"
                     /locus_tag="OQQ75_001022"
     CDS             32343..33860
                     /gene="lysS"
                     /locus_tag="OQQ75_001022"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HCS1975428.1"
                     /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH
                     TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD
                     DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
                     QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA
                     AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT
                     MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK
                     KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITE
                     YPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG
                     DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK"
     gene            complement(33903..34451)
                     /gene="idi"
                     /locus_tag="OQQ75_001023"
     CDS             complement(33903..34451)
                     /gene="idi"
                     /locus_tag="OQQ75_001023"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HCS1975429.1"
                     /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKG
                     QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF
                     RYRATDPNGIVENEVCPVFAARTNSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
                     WMVMQAANSEARKLLSAFAQHN"
     gene            34506..34577
                     /locus_tag="OQQ75_001024"
     CDS             34506..34577
                     /locus_tag="OQQ75_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975430.1"
                     /translation="MINQVSVYRQPPVLSGCRQVKTI"
     gene            complement(34574..34699)
                     /locus_tag="OQQ75_001025"
     CDS             complement(34574..34699)
                     /locus_tag="OQQ75_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975431.1"
                     /translation="MNLLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF"
     gene            complement(34701..36149)
                     /gene="uacT"
                     /locus_tag="OQQ75_001026"
     CDS             complement(34701..36149)
                     /gene="uacT"
                     /locus_tag="OQQ75_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417364.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate/proton symporter UacT"
                     /protein_id="HCS1975432.1"
                     /translation="MSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAG
                     AVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFA
                     AVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSVGL
                     SIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVFG
                     FLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFL
                     ALGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVC
                     ISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYN
                     LYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHAD
                     LVKESVSDKDLKVRTVRMWLLMRKLKKNEHGE"
BASE COUNT         8798 a         9201 c         9768 g         8764 t
ORIGIN      
        1 tggacatttt tatttcgaaa aagatgcgca atttcatttt attagcgcaa accaataata
       61 ttgcccgggc ggcagaaaaa atccatatga cggcttcgcc atttggtaaa agcattgccg
      121 cgctggaaga acaaattggc tatacgctat ttacccgcaa agataataat atcagcctca
      181 ataaagccgg tcaggaactg tatcaaaaac tgttcccggt ttatcaacga ctttctgcga
      241 ttgataatga aatccataac tcagggcgtc gttcacgaga aattgtgatt ggcatagata
      301 atacttatcc gacaattatt ttcgatcagt tgattagtct cggagataag tatgaaggcg
      361 tgaccgccca gccagttgag ttcagcgaaa acggcgttat cgataatctt tttgaccgtc
      421 agttagattt tattatctcc ccacagcatg tatctgcacg agttcaggaa ctggaaaacc
      481 tgactatcag tgaattacca ccgctgcgat tgggctttct cgtttctcgc cgttatgaag
      541 agcgtcaaga gcaagagctg cttcaggagc tgccctggct acaaatgcgc tttcaaaacc
      601 gggctaactt cgaagcaatg attgatgcga atatgcgacc ttgtgggatc aatcccacca
      661 ttatttatcg tccctacagt tttatggcca aaatcagcgc cgtggagcgc ggacattttc
      721 tgacggtgat cccgcatttt gcctggcgac tggtgaatcc ggcaacgctg aaatattttg
      781 atgcgccgca caggccgatg tatatgcagg aatatcttta ttcaatcaga aatcatcgtt
      841 ataccgccac gatgcttcag catattgctg aagatcgtga cgggacaaac cattaaccca
      901 gcatcgagcc ggttgcaatt aaattacggt gtaagtcgaa gacgtggcta agatcgtggt
      961 gaatatgtcc gccgggcgca ttttccagat agcgatgcag ataatcccga tacataggat
     1021 gtgcacaatt atcaatgata gtgcgggcgc gttgaagcgg ggaaagaccg cgcagatcgg
     1081 cgatcccttg ttcggtgatg atcactttga cgctgtgttc gctgtgatca acatggctgc
     1141 acattggcac gacggttgag atcttgcctt ctttagcaat cgacggagcc ataaagatcg
     1201 acagatacgc gttgcgttca aaatcaccgc tgccgccgat gccgttcatc agatcgaccc
     1261 cggctacgtg cgttgaattt gcatgcccgt aaatatcaaa ctccaggccg acgttcagag
     1321 cgatgacgcc cagacgacgg atgatttccg ggttattgga aatctcctgc ggacgcaaca
     1381 caatgcggct ggcaaagtaa tccatattgt cgtaaatctt gcgcagggaa tcggccgaga
     1441 ttgtcaggct ggaggcgctg gccccgctga ttttgtcggt ttccagtaaa tgcaccaccg
     1501 attcctgtag cacttccgaa tacatcatga acggaggaat ttccgggttt tcccccagac
     1561 gcgccattac cgcattattg atattgccca cgccactttg cagcggcaga aattccggcg
     1621 gaatacgccc atgcgccatt tcctgcaata agaacgtgac cacgttatcg gcaatctgct
     1681 ggcacatggg attttgctta tccagcatat taccggcgtc gggcaagttg gtttccacga
     1741 cggcgacaat ctttttcgga tcgatttgca catagcgggt accgacgcga tccattgcat
     1801 ggaagatcga cacgctattg cgccgcggtg gcgcgccagg aatcacaata tctgccagtt
     1861 ctgcaacgcg cggatcgtga tagtgattaa gttcaatgat cactttcttc gctcgcagca
     1921 gccaggtcgg cgcattaccg atcccgctgg ttaaccagac tcgaccatcc ggtgccagtg
     1981 ccgatgcttc aatgacggca acatcaatgt cgccgaagaa accgtaattg accatttgcg
     2041 ccacttcgct caaatgcagg tcaacgaaac tcaccgcgcc ctgattgatc tttttacgta
     2101 aaccggacga tgtttgatat ggcgcacgcc aggaaacagc atcggcgtca gaaagtacat
     2161 cgtcagcggc ggcgctgatt gacgcccccg tcagcaggcg aatttgatac ggctttttgg
     2221 cctcatgctg ttcgttagct ctgcgggcaa tcgcggtggg tagggctttc ggcgaacccg
     2281 ccggggtaaa gccgctaaat gccaccatgt cgttatgctg gataatttct gccgcttcat
     2341 cggcggtcat ccttgtccac tgagtttcca tttttactcc ttcgttcgca gggattaatg
     2401 accaacgaaa ttaggtttac gtttttcgag gaaagcgttc attccttcct ggtaatcttc
     2461 gctgtcataa accgcgcgtc gcatcccctg aatacgttca aattcatcgg agttcatggt
     2521 gtgcgcttcg cccagtacac gcagctcttc tttgataaca gcaatggcta acggcgcttt
     2581 ctcagagatg tggtgcgcca tttgtaaggt gaaatcttcc agttcttcca cttccacaac
     2641 atggttgagg atgccgacag ccagcgcgcg ctgggcggtg attggcgaag cggtaaaaat
     2701 cagctctttg acaatgtgga agcccgcgtc gcgggtcagg ttgtgaatgc cgaccaggtt
     2761 atacgggacg ccgaggttta caggcgtcat tgagaaggtt gaggtactgg cggcgatgat
     2821 cagatcggaa ctcatgatca tttcaaatgc gccaccccaa acactacctt ccaccatcga
     2881 aatgatcggt ttcgggaatt tttggatcat gcgggtgatt tgacgcaatg gatcatcata
     2941 ggagagcgga tcgcgaccgc cagacggcag ttcgtgaata tcgtgacctg cggagaagac
     3001 tttggatcca ctcggcgcgc gcaaaatgat acagcgaatt tccggccggt tgagatcgct
     3061 taacgcctgc ataagatcat caataaagac tttacttaag gcattaagtt ttcggccata
     3121 gttaaactca atgaccgcca ctttgttgat agtggcaacg ttcacatact gataagacat
     3181 aaaaattcct ttaatcaaaa tattgcgtct ggataaattc actgagctgc cgcaggccgg
     3241 tgcgcggtga gagcgtattg tttttgaccg ctaaaagcgt ctggcggtaa tagcgatcga
     3301 aatcttcatt cgcgaacagg tgattcagta cttcttcttc ggtctgctta cgcagccatt
     3361 ccaccgattg ttgttgccgc acttgttgta aacgaccact ggcagttagc gcggttttga
     3421 actcgatgat ggcgtgccag atctcatcga ttccacgttt ttccagtgcg ctacaagtca
     3481 gaacccgtgg ctgccattcg tcgtatttac gtcgcagaat atgcagggca ctctcgtaca
     3541 tatgccgggc aatggcgaca ttggtatggt tatcgccatc gtctttgttg ataacgatca
     3601 gatcagccac ttccatcagc ccttttttaa tgccctgcag atcatcgccg ccaccggcaa
     3661 tttgcaacga gataaaacag tccaccatgc gggcgacttc tgtttccgac tgcccgacgc
     3721 caaccgtttc gacaatcact acgtcataac ccgccgcttc gcataacagc attaattccc
     3781 gcgctcgctg actggcaccg cccagatgac cggaggatgg taccgggcga ataaacgccg
     3841 cttcggcacg cgccaggtca ttcatgcgga ttttatcccc gagaatgcta ccgccagtga
     3901 ccgggctgct gggatcgacc gcaataaccg cgacctttaa tccctctcga atcaacaaca
     3961 tgccaaaggc ctcaagaaag gtacttttcc ccgcgctggg ggtgccggta acgcccagtc
     4021 gcagggtgtt accgcagtac ggcataatgg catcaagcag ctgcgtactt agtgcctgat
     4081 gacgcgggtg acggctttcc accagcgtca tggcctgggc gagtgtggca cgctcaccct
     4141 gacgtaagcg gcgaatactt tctgccagcg tggcttcatt aatcatgatg ctggcttatc
     4201 agattcagta cgtcgcgcac actgtcgagc ataggtgtac ctggaccata aatcgccgcc
     4261 acgccgcgct cttgcaggaa ggcgtaatcc tgcggtggaa tgacgccacc ggcgactacg
     4321 cagatatctt cgcgtcccca ttttttcagc gcctcgacca gttccgggat cagcgtttta
     4381 tgaccggcag ccagtgagga tgcgcccact acgtgaacgt cattttctac tgccaggcgg
     4441 gcgatctctt caggtgtaga gaacatcggg cttaaatcta cgtcgaaacc gagatcggaa
     4501 taggcgctgg cgatcacttt cgagccgcga tcgtgcccat cctggcccat tttggcgatc
     4561 agaatgcgca ggcgacgacc attgtcggca aggaactgct ccgtttgcgc aacaatggca
     4621 tcgaactcgg aggccgattt ctcagattga tgatagcttt gcgcaatcac gccggtaaca
     4681 cacaggcttg gcaccagata acggtcgaaa gcggcttcca gcgcatcgga aatttcaccc
     4741 agggtggcgc gaacgcgagc ggcattaaca gcggcagcca gcaggttttc gttatgctgt
     4801 gcggcgtgag tcagggcgtt caacgcggcg gttacggcgg catcatcacg ggtggcgcga
     4861 atgcgttcca gcgaagcaat ttgctcgtta cgcaccatca cgttgtcgat ctcaagtaca
     4921 tcggtttcgt cttcgtgatc cagtttgtac ttgttgacac caacgatgac acgtttgccc
     4981 tggtcgataa gcgactgttc gcgcgctgag gcctattcga tcattcgttt tggcagacct
     5041 gcttcgatcg ctttcgccat accaccggct tcgtcgatct gttggataat agctctggct
     5101 tgtttgacga tttgatcggt cagcgactca atgtaatagg atccggccag tggatcgacg
     5161 gtgcggcaga gttctgattc ttcctggatg atgatctggg tgttgcgggc aatgcgtgct
     5221 gagaaatcgg taggcaaacc aagcgcttcg tcaaaggcgt tggtatgcag tgactgagta
     5281 ccgcccagcg tcgcagccag tgcttcaatg gtggtgcgga taacgttgtt atacggatcc
     5341 tgttcagtca ggctccagcc tgaggtctgg cagtgggtac gcagcgccag tgatttcggg
     5401 tcctgtgcgc caaatccact gaccgcttcg ctccataaat aacgtgccgc acgcaacatg
     5461 gcgacgttca taaacagatc catgccgatg ccgaagaaga acgacaggcg aggagcgaag
     5521 tcatcaattt tcagtccggc agagattgct gctttgatgt actcaatccc atcagcgagc
     5581 gtaaatgcta cctgctgcac gcagttggca cccgcttcac ccatgtggta accgctgata
     5641 ctgatggtat taaatcgcgg catgttgccg gaacaccagg cgatgatgtc ggcgataatg
     5701 cgcattgacg gttttggcgg gtaaatatag gtgttgcggc agaggtactc tttgaggata
     5761 tcgttctgaa tggtgccggt cagtttatca ggtgtaacac cttgctcttc cgcggcgacg
     5821 atataaaacg ccagtactgg tagcactgcg ccattcatgg tcatcgaaac cgacatttta
     5881 tccagcggga tctggtcgaa caggactttc atatcttcca cggtgtcgat agcgacgccc
     5941 gctttgccga cgtcgcccgc cacgcgcggg ttatcggagt cgtagcctcg gtgggtggca
     6001 aggtcaaacg caacggaaag acctttttgc ccggcggcca ggttacggcg ataaaaagcg
     6061 ttggactctt ttgctgttga aaaaccagca tactgacgga tggtccacgg ttgggcggta
     6121 tacatagtgg cacgcgggcc acgaacgtag ggcggcaaac caggaagggt acctgtcacc
     6181 tccagattat cgagatcggc ttcggtatac agcggcttga tggtgatccc ttccgcggtt
     6241 tgctgaacca gcgagtcgac agttttctcc cgacggctca attccttgtt ggcaagctgt
     6301 tgccactcct gcacgttaga cattatttgc tccgtaaaac gcaatcaaaa tgagggtatt
     6361 tgcgcctacg gtgagctttt tacgtgggtt tgtcgccagc aaaaaaaatg cattcagacg
     6421 tcgttttttg ccgcctgaga tttgtctatt ttgtgatgtg attcaaggaa tacaaaaaga
     6481 agtgaggaca acgcctgata tgtgctatca ggcattattt gatggattaa tcctgacgaa
     6541 ggactttgtg accataatcg agcaacgcat cagtgacttt acgcatcatg cggctttcag
     6601 gagcaaagcg gtgccagtag agcatccggc gttgaaatag ccctggcgtt aagtcaatca
     6661 gttcaccgct ggctagttct ttctcgattt gcaggtgcgg gatcatacag caggtggtgc
     6721 cctggcgagc aagttgcacg aacgcttctg aagaattaac gatatggcag ggcacgctgc
     6781 ctggaggcag atcgaagttt tgctgcaaaa aggcctggtg catatcgtca agatggtcaa
     6841 aggcgaccac aggtgctttc aataatgccg aacgcgttac gccgttaggg aaatattttt
     6901 cggcaaacgg ttttgagctg acgaacagat agtcaagcgc accgagctta tcgacaaggc
     6961 aactcggcag cgcctgatgt tgaatactca ccgcgccgac cacttcgccg cggcgcagac
     7021 gttcctgagt acgggtttca tcttctacct gcaagttgag gcggataggc gaatcagcca
     7081 atacaggagc cagtgccgga agcaaccacg tcgccagact gtcggcgttg accgccagtg
     7141 aaagcagcag cggagtcgaa ccggtttgtt catcgcccag ccactcttct tccagcaact
     7201 ccacctggcg cagcagtgcc agcagttttt gcccttgttc cgtcgggcgc ggcggtacgg
     7261 tacgcaccaa cagcggctgc ccgaacatat tttccagttg cttaatgcgc tgtgagacgg
     7321 ctgattgtgt aatgcacagc ttttgtgccg cgcgctcaaa tcctcgttca cgtatcaccg
     7381 catccagtgc ctgtaatgtt ctgtagtccg ggcgtttcat tgctgttgtc tgctcctggt
     7441 aaatgctttt tcctgcacta tgacacaatt ttgtgtcagg ttgcatatac cgcagccgtc
     7501 ggcgggtaac atttgtatca atggttaaac gcgcagctta aaagatcagg gatttgcgct
     7561 attgcatttc gcttagcgac ttcgcgccct ggttatgttg aatggcgtgg cgttattgcc
     7621 tctgttcgca ccgtggagcg gcatacccag accgttgtat gctttatttg cggggcgaaa
     7681 ggggatgccc gccattgcgc gatattttat ggatgagtta accacccggc ttgccaacgg
     7741 ggtctgaatc gctttttttg tatataatgc gtgtgaaatt tcataccaca ggcgaaacga
     7801 tcatgacgca ggatgaattg aaaaaagcag taggatgggc ggcacttcag tatgttcagc
     7861 ccggcaccat tgttggtgta ggtacaggtt ccaccgccgc acactttatt gacgcgctcg
     7921 gcacgatgaa aggccagatt gaaggggccg tttccagttc agatgcttcc actgaaaaac
     7981 tgaaaagcct cggcattcac gtttttgatc tcaacgaagt cgacagcctt ggcatctacg
     8041 ttgatggcgc agatgaaatc aacggccaca tgcaaatgat caaaggcggc ggcgcggcgc
     8101 tgacccgtga aaaaatcatt gcttcggttg cggaaaaatt tatctgtatt gccgacgcct
     8161 ccaagcaggt tgatattctg ggtaaattcc cgctgccagt agaagttatc ccgatggcac
     8221 gtagtgcagt ggcgcgccag ctggtgaaac tgggcggtcg tccggaatac cgtcagggcg
     8281 tggtgaccga taatggcaac gtgatcctcg acgtccacgg catggaaatc cttgacccga
     8341 tagcgatgga aaacgccata aatgcgattc ctggcgtggt gactgttggc ttgtttgcta
     8401 accgtggcgc ggacgttgcg ctgattggca cacctgacgg tgtcaaaacc attgtgaaat
     8461 gatctgacgg gggaacctcc cccgttaaaa aaattctctt cattaaattt ggtgacatgt
     8521 gtcacgtttt tacctggcta ttgtcgattg ctctaaataa atcctctaaa ccagcatatt
     8581 caaccaagaa atacctttgc gtgatatttc ctcaacatcg cgacgcaaac gttcatattg
     8641 ccgcaatatt attttttgat atgttgaaag gcggatgcaa atccgcacac aacatttcaa
     8701 agacaggatt gggtaaatgg caaaggtatc gctggagaaa gacaagatta agtttctgct
     8761 ggtagaaggc gtgcaccaaa aggcgctgga aagccttcgt gcagctggtt acaccaacat
     8821 cgaatttcac aaaggcgcgc tggatgatga acaattaaaa gaatccatcc gcgatgccca
     8881 cttcatcggc ctgcgatccc gtacccatct gactgaagac gtgatcaacg ccgcagaaaa
     8941 gctggtcgct attggctgtt tctgtatagg aacaaaccag gttgatctgg atgcggcggc
     9001 aaagcgcggg atcccggtat ttaacgcacc gttctcaaat acgcgctctg ttgcggagct
     9061 ggtgattggc gaactgctgc tgctattgcg cggcgtgccg gaagccaatg ctaaagcgca
     9121 ccgtggcgtg tggaacaaac tggcggcggg ttcttttgaa gcgcgcggca aaaagctggg
     9181 tatcatcggc tacggtcata ttggtacgca attgggcatt ctggctgaat cgctgggaat
     9241 gtatgtttac ttttatgata ttgaaaataa actgccgctg ggcaacgcca ctcaggtaca
     9301 gcatctttct gacctgctga atatgagcga tgtggtgagt ctgcatgtac cagagaatcc
     9361 gtccaccaaa aatatgatgg gcgcgaaaga aatttcacta atgaagcccg gctcgctgct
     9421 gattaatgct tcgcgcggta ctgtggtgga tattccggcg ctgtgtgatg cgctggcgag
     9481 caaacatctg gcgggggcgg caatcgacgt attcccgacg gaaccggcga ccaatagcga
     9541 tccatttacc tctccactgt gtgaattcga caacgtactt ctgacgccac acattggcgg
     9601 ttcgactcag gaagcgcagg agaatatcgg cctggaagtt gcgggtaaat tgatcaagta
     9661 ttctgacaat ggctcaacgc tctctgcggt gaacttcccg gaagtctcgc tgccactgca
     9721 tggtggtcgt cgtctgatgc acatccacga aaaccgtccg ggcgtgctaa ctgcgctgaa
     9781 caaaatcttc gccgagcagg gcgtcaacat cgccgcgcaa tatctacaaa cttccgccca
     9841 gatgggttat gtagttattg atattgaagc tgacgaagac gttgccgaaa aagcgctgca
     9901 ggcaatgaaa gctattccgg gtaccattcg cgcccgtctg ctgtactaat tccccttctc
     9961 tgaaaattaa cgggcaggtc actgacttgc ccgttttttt atcccttctc cacaccgttg
    10021 ccgcgttgcg cattctactt tgcgagtctg ctccagaaaa taaatcaaag tcagatcaat
    10081 gcgttgtgtt tatttaatgg ggatttacga tggcgggaca gtatggggct gtaacggtaa
    10141 agccctcacc gaagcgaggg cttaaaggag aagggttatg atgcgacttg tcatcatact
    10201 gattgtactg ttactgataa gtttcggagc ttattaacag tcagtctctg gggaggagtc
    10261 atcctccctt acccttactc actaaattag gtcaaagaat caacgatgtc aatcagggcg
    10321 atgcggggtg catcgccctg aaccgaactt tttgatagcc acttcatcgc ccacgtttac
    10381 tgccgtaata gatccttttt cccaaaaatt atctctgttt tgcatggggt ttttcgaaca
    10441 cgctcgaaga aaagatttaa aggtagatca atgcgttgtg gttatttaaa gagagcttac
    10501 gatagctggg cagcatgggg ctgtaacggt aaagccctca ccgaagcgag ggcttgaagg
    10561 agaagggtta tgatgcgact tgccatcata ctgattgtac tgttactcat aagtttccca
    10621 gcttattaac agtcagtcac aggggaggag caatcctccc ttacccttac tcactaaatt
    10681 aggttaaaga atcaacgatg tcaatcaggg cgatgcaggt gtatcgccct taccactccc
    10741 agactttcga cggtgtaacc accgcaggaa gagggatatc ccactcttca acggggagtt
    10801 tttccaccaa ctgacaatca tgcgcataac ccaccggttg cgttttatag tgctgccagt
    10861 tttgtaaggt ccgatcataa aaaccaccgc ccattcccag gcgctgaccg tactcatcaa
    10921 aggcgaccag cggtgtgatc agcacgtcta atcgggaaag gggtagcacg tcacgcacat
    10981 ccagttttgg ctcatggatt ttcaacctgt tcatcaccag ttcgctttgc ggatggtaat
    11041 tcaggaacag caaattacca gcactaaagg gatgcaaaac tggaagatat acgcgcttac
    11101 cggcgcgcca gagttgttct attagcggct gggtgtcgag ttcaccatca aaagagagga
    11161 atacagcgac cgtatgcgcc atcaccaccg ggggataagt catcatccgg gtagcggctt
    11221 gttgacccat ttcctgctgt tgttccggcg ttaacgcacg acgacgttgc cgaatcattt
    11281 tgcggatttc ttgtcgggat aatgtcagtg ggagttctgg tagttgcgtc atggctggtg
    11341 ccagataaga agggaatctc cgagatgccg ccgcaggctg taacccttga acccttggtt
    11401 caaggtgaat gtgtcgtcgc agttttaagg cttctcggac ggaccgagca tgctcaccaa
    11461 ccgcggagcg ccacattctt gtggtatgaa atatcggctc aggggactgg cccgcttgcg
    11521 aacatctcag agaaattttg tcttcacggt tactctacca cagtaaaccg aaaagtgtca
    11581 ttcaaagttt tggttagttt tttcggtgat gcgaccttgt tcaagtaacg cttgttctat
    11641 ggtctgctgc agcatccgaa tacgctgttc catacttgcc gcgtagtcac gagtcttcgc
    11701 tttttcttgc gctaactcat agctgatatt caatgcggca atgaagacca actgttcagt
    11761 atttgtgact ctagtgcgtt ctttcagatc ttgcaaccgt tggttcagat cgtccgctgc
    11821 ctgattcaac gcatcccttt ggtcaggcgg gcagttcaca cgcagtgaac ggccaaaaat
    11881 ttggatatcg acgggttgtg cagacatgcc accttcctgc tgattgactg cgctgccttc
    11941 gtctttagac ccatggtctg cgaaggggcg acactatagc taccctgatg agaagagaca
    12001 agcccttttc tggtccacca gggcccaaag tggtagcata tcatgaatat tcctcccttt
    12061 gacgacgaat gcttatgtct atacagaacg aaatgcctgg ttacaacgaa atgaaccagt
    12121 atctgaacca acaagggacg ggtctgaccc ctgccgagat gcatggttta atcagtggga
    12181 tgatatgtgg cggtaacgat gacagctcat ggctgccgct acttcacgac ctgacgaacg
    12241 aaggcatggc tttcggtcat gagctggcac aggcactgcg taaaatgcac tctgccacca
    12301 gcgatgccct gcaggatgac ggcttccttt ttcagcttta tctgcctgat ggcgatgatg
    12361 tcagcgtttt cgatcgggct gatgcattgg caggttgggt caatcacttc ctgcttggtc
    12421 ttggcgttac gcaaccgaag ctggataaag tgaccggcga aaccggtgaa gctatcgacg
    12481 atctgcgtaa cattgcgcaa ctgggttacg acgaagacga agatcaggaa gagcttgaaa
    12541 tgtcgcttga agagatcatc gaatacgttc gtgttgccgc gctgttatgc cacgacacct
    12601 ttactcatcc gcaaccgacc gcgccagaag tacaaaaacc gactctacac taaaaacaaa
    12661 aaacgtaagg agagtgttat gagtgagata tcccggcaag agtttcagcg tcgccgtcag
    12721 gccctggtgg agcaaatgca acccggcagc gccgcgctga tttttgctgc accagaagta
    12781 acacgtagcg ccgacagcga atacccctat cgtcagaaca gtgacttctg gtacttcacc
    12841 ggctttaacg aaccggaagc ggtgctggtg ctgattaaaa gcgatgacac tcataaccac
    12901 agcgttctgt ttaaccgcgt tcgcgacctg acggcggaga tctggtttgg ccgtcgctta
    12961 ggccaggatg ccgcgccaga gaaactgggc gttgaccgcg cactggcatt cagcgaaatc
    13021 aatcagcaac tttatcaact acttaacggc ctggatgtgg tttaccatgc ccagggcgaa
    13081 tatgcatatg ctgatgaaat catgaacagt gcgctggaaa aactgcgtaa aggttcgcgg
    13141 caaaatctca ccgcaccggc aacgatgatc gactggcgtc ctgttgttca tgaaatgcgc
    13201 ctgttcaaat cgccagaaga gattgccgta ctccgccgcg cgggagaaat caccgccatg
    13261 gcacatacac gggcgatgga aaaatgccgt ccgggaatgt tcgagtacca tctggaaggc
    13321 gaaattcacc acgaatttaa ccgccacggt gcgcgctatc cgtcctataa caccattgtc
    13381 ggcagcggtg aaaacggctg cattctgcac tacaccgaaa acgagagtga actgcgcgac
    13441 ggtgacctgg tgttgattga cgcgggttgt gaatacaaag gttacgcggg cgatattacc
    13501 cgcaccttcc cggtcaacgg caaattcacc caggcccagc gtgaaatcta cgacattgtg
    13561 ctggagtctc tcgaaaccag cctgcgcctg tatcgtccgg gaacttccat tctggaagtc
    13621 actggtgaag tggtgcgcat catggttagc ggcctggtaa aactcggcat tctgaaaggt
    13681 gatgttgatg aactgatcgc tcagaatgcc catcgtcctt tctttatgca tggccttagc
    13741 cactggttag ggctagatgt ccatgacgtt ggcgtttatg gtcaggatcg ctcgcgcatt
    13801 ctggaaccgg gcatggtact gaccgtagag ccagggctgt atattgcgcc ggatgcagaa
    13861 gtgccagaac aatatcgcgg tatcggcatt cgtattgaag acgacattgt gattaccgaa
    13921 accggtaacg aaaacctcac cgccagcgtg gtgaaaaagc cggaagaaat cgaagcgttg
    13981 atggctgctg cgagaaagca atgagcgtaa tcatcgtcgg tggcggcatg gcgggcgcga
    14041 cgctggcgct ggctatttcc cggttaagtc acggggcgct gccggtacat ttgattgaag
    14101 cgactgcgcc agagtcacat gctcatccgg gctttgatgg acgagcgata gcgctggcgg
    14161 cgggtacctg tcagcaactg gcgcgcatcg gcgtctggca atctctggcg gattgcgcaa
    14221 ctgccatcac caccgtgcat gtcagcgatc gtggtcacgc tggatttgtc accctcgccg
    14281 cagaagatta ccaactggcg gcgctgggac aggttgtcga attgcacaat gtcgggcaac
    14341 ggctgtttgc attgctgcgt aaagcacctg gcgtaacgct gcattgccct gatcgcgtgg
    14401 ctaacgttgc ccgtactcag agtcacgttg aagtgacgct ggagagtggc gagacgctga
    14461 cgggccgcgt gctggtagca gctgatggca cccattcagc gttagccacc gcgtgcggcg
    14521 ttgactggca gcaggagcct tacgaacaac tggccgtgat tgccaacgtt gcgacttccg
    14581 ttgcgcacga aggccgcgct tttgaacgct tcacgcaaca tggcccgctg gcgatgttgc
    14641 cgatgtctga cggacgctgt tcgctggtct ggtgtcatcc actggaacgg cgcgaagagg
    14701 tgctgtcgtg gagcgacgag aagttttgcc gtgaactcca gtcggccttt ggctggcgac
    14761 ttggaaaaat tacccacgcc ggtaaacgca gtgcttatcc gctggcgtta acccgcgccg
    14821 ccagagctat tacccatcgt accgtgctgg tgggcaatgc ggcgcaaact ctgcacccga
    14881 ttgccgggca agggtttaac ctcggtatgc gagatgtcat gagccttgcg gaaaccctga
    14941 ctcaggcgca tgagcgcgga gaagacatcg gtgattacgg catattgtgc cgctatcagc
    15001 agcgtcgaca gagcgatcgc gaagcaacca tcggcgtcac ggacagcctg gtacatcttt
    15061 ttgccaaccg ttgggcaccg ctggttgtcg ggcgcaacat cggactgatg acgatggaat
    15121 tattcacccc ggcacgcgat gtgctggcgc agcgcaccct cggttgggtg gcgcgttgaa
    15181 ggcggtttta aggaataaac aatgcaatgt gttgatgtag ccattgttgg tggcggcatg
    15241 gtggggctgg cggttgcctg cggcttacag gggagcggct tacgcgttgc cgtactggag
    15301 cagcgcgtac cggaacctct ggcggcggat gcaccaccac aactgcgcgt ttcggctatc
    15361 aatgccgcca gcgaaaaatt actcacccgt cttggcgtct ggcaggacat tctctctcgt
    15421 agggccagtt gttatcacgg tatggaagtg tgggacaaag acagttttgg tcacatttcg
    15481 tttgacgatc aaagcatggg ctatagccat cttgggcata tcgttgaaaa ctcagtgatt
    15541 cactacgcgc tgtggaacaa agcgcagcag tcgtcagata tcactctgtt ggcccccgca
    15601 gaattacagc aggtcgcctg gggagaaaat gaaactttcc tgacgctgaa agatggcagc
    15661 atgttaacgg cgcgtctggt gattggcgcg gacggtgcta attcctggtt gcgcaacaaa
    15721 gcagatattt cgctgacttt ctgggattat cagcatcacg cgctggtagc gaccattcgc
    15781 acggaagaac cgcatgatgc ggtggcgcgg caggttttcc atggcgaagg cattctggcc
    15841 tttttaccgc ttagcgatcc gcatctttgc tcaattgtct ggtcactgtc gccagaggaa
    15901 gcgcagcgga tgcagcaggc aagtgaagat gaatttaatc gcgcgttaaa tatcgctttt
    15961 gataatcgcc tgggcttatg caaggttgag agcgcgcgtc aggtgttccc actgacgggg
    16021 cgttatgcgc gccagtttgc cgcgcaccgt ctggtgctag tgggcgacgc cgcgcatacc
    16081 attcacccgc tggcggggca gggagtaaat ctcggcttta tggatgctgc agagctgatt
    16141 gctgaactga aacggttgca tcgtcagggg aaagacatcg ggcagtacat ttacctgcgc
    16201 cggtatgagc gtagccgcaa gcacagtgcg gcgctgatgc tggctggtat gcagggattc
    16261 cgcgatctgt tttccggtac caatccggcg aaaaaactgc tgcgtgatat tggtttgaaa
    16321 ctggccgaca cgcttcctgg cgttaaacca caacttatcc gccaggcaat gggattaaac
    16381 gatttgcctg aatggctgcg ttaaaaattt ctcttctgct gtttatttga tacccatcac
    16441 actttcatct cccggttttt tcgccgggag attttcctca tttgaaataa actaatttca
    16501 cctccgtttt cgcattatat tttctaatgt cattattttt tgatttagtg ttttttgaca
    16561 tttttttagc tcttaatatt gccttattca aattagcttt ctaatggcat catctttata
    16621 tagaaactgg tgtgtttttt ggttttttat tctgtcgcga ttttggcgtt ttttaaccat
    16681 aagctaatgt gatgatcaat tttaccttat ggttaacagt ctgtttcggt ggtaagttca
    16741 ggcaaaagag aacgattgcg ttggggaccg ggagtggctc cgatgctggg tttcgtggtg
    16801 ataatttcac catgaaaagt tgtcagcccc gcttattcaa tgaggacaag atggcacaac
    16861 agactccttt gtacgaacaa cacacgcttt gcggcgctcg catggtggat ttccacggct
    16921 ggatgatgcc gctgcattac ggttcgcaaa tcgacgaaca tcatgcggta cgtaccgatg
    16981 ccggaatgtt tgatgtgtca catatgacca tcgtcgatct ccgcggcagc cgcacccggg
    17041 agtttctgcg ttatctgctg gcgaacgatg tggcgaagct caccaaaagc ggcaaagccc
    17101 tttactcggg gatgttgaat gcctctggcg gtgtgataga tgacctcatc gtctactact
    17161 ttactgaaga tttcttccgc ctcgttgtta actccgccac ccgcgaaaaa gacctctcct
    17221 ggattaccca acacgctgaa cctttcggca tcgaaattac cgttcgtgat gacctttcca
    17281 tgattgccgt gcaagggccg aatgcgcagg caaaagctgc cacactgttt aatgacgccc
    17341 agcgtcaggc ggtggaaggg atgaaaccgt tctttggcgt gcaggcgggc gatctgttta
    17401 ttgccaccac tggttatacc ggtgaagcgg gctatgaaat tgcgctgccc aatgaaaaag
    17461 cggccgattt ctggcgtgcg ctggtggaag cgggtgttaa gccatgtggc ttgggcgcgc
    17521 gtgacacgct gcgtctggaa gcgggcatga atctttatgg tcaggagatg gacgaaacta
    17581 tttctccttt agccgccaac atgggctgga ctatcgcctg ggaaccggca gatcgtgact
    17641 ttatcggtcg tgaagccctg gaagtgcagc gtgagcatgg tacagaaaaa ctggttggtc
    17701 tggtgatgac cgaaaaaggc gtgctgcgta atgaactgcc ggtacgcttt accgatgcgc
    17761 agggcaacca gcatgaaggc attatcacca gcggtacttt ctccccgacg ctgggttaca
    17821 gcattgcgct ggcgcgcgtg ccggaaggta ttggcgaaac ggcgattgtg caaattcgca
    17881 accgtgaaat gccggttaaa gtgacaaaac ctgtttttgt gcgtaacggc aaagccgtcg
    17941 cgtgatttac ttttttggag attgattgat gagcaacgta ccagcagaac tgaaatacag
    18001 caaagaacac gaatggctgc gtaaagaagc cgacggcact tacaccgttg gtattaccga
    18061 acatgctcag gagctgttag gcgatatggt gtttgttgac ctgccggaag tgggcgcaac
    18121 ggttagcgcg ggcgatgact gcgcggttgc cgaatcagta aaagcggcgt cagacattta
    18181 tgcgccagta agcggtgaaa tcgtggcggt aaacgacgca ctgagcgatt ccccggaact
    18241 ggtgaacagc gaaccgtatg caggtggctg gatctttaaa atcaaagcca gcgatgaaag
    18301 cgaactggaa tcactgctgg atgcgaccgc atacgaagca ttgttagaag acgagtaacg
    18361 gctttattcc tcttctgcgg gagaggatca gggtgaggaa aatttatgcc tcaccctcac
    18421 tctcttcgta aggagagagg ttcacaattc actgcacgtt tcaggaacca tcgctcatga
    18481 cacagacgtt aagccagctt gaaaacagcg gcgcttttat tgaacgccat atcggaccgg
    18541 acgccgcgca acagcaagaa atgctgaatg ccgttggcgc acaatcgtta aacgcgctga
    18601 ccggccagat tgtaccgaaa gatattcagc ttgcgacccc gccgcaggtt ggcgcaccgg
    18661 cgaccgaata cgccgcactg gcagaactca aggctattgc cagtcgcaat aaacgcttca
    18721 cgtcttacat cggcatgggt tacaccgccg tgcagctacc gccggttatc ctgcgtaaca
    18781 tgctggaaaa tccgggctgg tataccgcgt acactccgta tcaacctgaa gtctcccagg
    18841 gccgccttga agcactgctc aacttccagc aggtaacgct ggatttgact ggactggata
    18901 tggcctctgc ttctcttctg gacgaggcca ccgctgccgc cgaagcaatg gcgatggcga
    18961 aacgcgtcag caaactgaaa aatgccaacc gcttcttcgt ggcttccgat gtgcatccgc
    19021 aaacgctgga tgtggtccgt actcgtgccg aaacctttgg ttttgaagtg attgtcgatg
    19081 acgcgcaaaa agtgctcgac catcaggacg tcttcggcgt gctgttacag caggtaggca
    19141 ctaccggtga aattcacgac tacactgcgc ttattagcga actgaaatca cgcaaaattg
    19201 tggtcagcgt tgccgccgat attatggcgc tggtgctgtt aactgcgccg ggtaaacagg
    19261 gcgcggatat tgtttttggt tcggcgcaac gcttcggcgt gccgatgggc tacggtggcc
    19321 cacacgcggc attctttgcg gcgaaagatg aatacaaacg ctcaatgccg ggccgtatta
    19381 tcggtgtatc gaaagatgca gctggcaata ccgcgctgcg catggcgatg cagactcgcg
    19441 agcaacatat ccgccgtgag aaagcgaact ccaacatttg tacttcccag gtactgctgg
    19501 caaacatcgc cagcctgtat gccgtttatc acggcccggt tggcctgaaa cgtatcgcta
    19561 accgcattca ccgtttgacc gatatcctgg cggcaggcct gcaacaaaaa ggtctgaagc
    19621 tgcgccatgc gcactatttc gacactctgt gtgtggaagt ggccgacaag gcgggcgtac
    19681 tggcgcgtgc cgaagcggct gaaatcaacc tgcgtagcga tatcctgaac gcggttggga
    19741 tcacccttga tgaaaccacc acgcgtgaaa acgtaatgca gcttttcagc gtgctgctgg
    19801 gcgataacca cgggctggag atcgacacgc tggacaaaga cgtggctcac gacagccgct
    19861 ctattcagcc tgcgatgctg cgcgacgacg aaatcctcac tcatccggtg tttaatcgct
    19921 accacagcga aaccgaaatg atgcgctata tgcactcgct ggagcgtaaa gatctggcgc
    19981 tgaatcaggc gatgatcccg ctgggttcct gcaccatgaa actgaacgcc gccgccgaga
    20041 tgatcccaat cacctggccg gaatttgccg aactgcaccc gttttgcccg ccggaacagg
    20101 ctgaaggtta tcagcagatg attgcgcagc tggctgactg gctggtgaaa ctgaccggtt
    20161 acgacgccgt ttgtatgcag ccgaactccg gcgcacaggg cgaatacgcg ggcctgctgg
    20221 cgattcgtca ttatcatgaa agccgcaacg aagggcatcg cgatatctgc ctgatcccgg
    20281 cttctgcgca cggaactaac cccgcttctg cacatatggc aggaatgcag gtggtggttg
    20341 tggcgtgtga taaaaacggc aacatcgatc tgactgatct gcgcgcgaaa gcggaacagg
    20401 cgggcgataa cctctcctgt atcatggtga cttatccctc tacccacggc gtgtatgaag
    20461 aaacgatccg tgaagtgtgt gaagtcgtgc atcagttcgg cggtcaggtt taccttgatg
    20521 gcgcgaacat gaacgcccag gttggcatca cctcgccggg ctttattggc gcggacgttt
    20581 cgcacctcaa cctgcataaa actttctgca ttccgcacgg cggtggtggt ccgggtatgg
    20641 gaccgatcgg tgtgaaagcg catctggcac cgtttgtacc gggtcatagc gtggtgcaaa
    20701 tcgaaggcat gttaacccgt cagggcgcag tttctgcggc accgttcggt agcgcctcta
    20761 tcctgccaat cagctggatg tacatccgca tgatgggcgc agaagggctg aaaaaagcaa
    20821 gccaggtggc aatcctcaac gccaactata ttgccagccg cctgcaggat gccttcccgg
    20881 tgctgtatac cggtcgcgac ggtcgcgtgg cgcacgaatg tattctcgat attcgcccgc
    20941 tgaaagaaga aaccagcatc agcgagctgg atattgccaa gcgcctgatc gactacggtt
    21001 tccacgcgcc gacgatgtcg ttcccggtgg cgggtacgct gatggttgaa ccgactgaat
    21061 ctgaaagcaa agtggaactg gatcgcttta tcgacgcgat gctggctatc cgcgcagaaa
    21121 ttgaccaggt gaaagccggt gtctggccgc tggaagataa cccgctggtg aacgcgccgc
    21181 acattcagag cgaactggtc gccgagtggg cgcatccgta cagccatgaa gttgcggtat
    21241 tcccggcagg cgtggcagac aaatactggc cgacggtgaa acgtctggat gatgtttacg
    21301 gcgaccgtaa cctgttctgc tcctgcgtac cgattagcga ataccagtaa ttcactgatt
    21361 cgactatttt ctaaaggcgc ttcggcgcct ttttagtcag atgacaaagt acaaaagtgc
    21421 tcagacagtc ccctcgcccc tttggggaga gggttagggt gaggggaaca ggccggcact
    21481 ggcgcgaata tttaccctca ccccggccct ctccctgaaa gggcgagggg aaaagcgtgc
    21541 caacattgaa gattgagcca gtttgttagc aatctcaaag atacgtcaac gaattaattt
    21601 ttctcggaaa aacaaatggc tatagcactt gtgaccggtg gcagtcgcgg catcgggcgg
    21661 gcaactgcat tactgttggc gaaagaagag tatacggtgg cggttaatta tcaacaaaac
    21721 ctccatgcgg cgcaggaagt ggtgaactta atcacgcaag ccggtggcaa ggcattcgtg
    21781 ctccaggcgg atatcagcga cgaaaatcag gtcatcgcaa tgtttacagc aatcgatcag
    21841 cacgatgaac cgctagcagc gctggtcaat aacgccggga tcttgtttac ccagtgcacc
    21901 gttgaaaacc ttaccgcaga gcgaatcaac cgagtacttt ccaccaacgt gacgggatat
    21961 tttctctgct gccgcgaggc ggtaaaacgc atggcgctta aaaatggtgg cagtggcggc
    22021 gctatcgtca atgtctcttc ggtggcctca cggttgggtt cgccagggga ataggttgat
    22081 tacgcggcat cgaaaggggc gattgatacg ttaaccaccg gactatcgct ggaagtcgcc
    22141 gcgcagggga tccgcgttaa ctgcgtgcgg ccagggttta tttataccga aatgcacgcc
    22201 agcggcggcg agcttggacg cgtcgatcgc gttaagtcga acatccccat gcagcgtggt
    22261 ggacaggcag aagaggtcgc gcaggccatt gtctggctac taagtgataa agcctcttac
    22321 gtcacgggaa gttttatcga tttggcgggc gggaaataaa acagggaagt tgtctgaccg
    22381 gatgcaacaa gtattgcatc cggtacttca tcgacttaaa gcttctcgcc gttgctggca
    22441 atcacctctt tgtaccagtt aaagctcttc ttacgtgaac gcgacatatc gccagtaccg
    22501 tcgtcatgtt tattcacata gataaagccg tagcgtttgc tgtactgccc ggtagtgaat
    22561 gacacgcagt cgatgcagcc ccacggtgtg tagcccatca gatccacacc atcgtaagtc
    22621 actgcttttt tcatctcttc aatatgggcg cgcaggtagt caatgcggta gtcgtcgttg
    22681 atgctgccat cttcttccac tttgtcgtaa gcgccaaaac cgttttcgac aataaacagc
    22741 ggcctctgat aacgctcata cagttcgcaa agggcatagc gcagacctac tggatcaatc
    22801 tgccagcccc agtcagacgc tttaacatac gggttcggta cgctgccttc aaaaccagag
    22861 atcgcatcgc cggtgccgcc ttcggccttc actgcgttga tcatgtaata gctgaaacca
    22921 agataatcgc aggtgccttc acgcagtaca tccagatcgc catcttccat tttgatgtta
    22981 aatccgcgac gctcccactc gttcaacaca taggacgggt aatagccgcg tagctgcaca
    23041 tcggtaaaga cgtagcgttc gcgcatcgac tcctgagcga acatcacatc gtccgggtta
    23101 caggagtaag gatagagcgg caccatcgcc agcatacagc cgactttcat ctccgggtta
    23161 atgcgacgcg cggctttcac tgctagggcg ctggcgacaa actggtgatg cagcacctgg
    23221 tacatcgtct cttccgggtt gtcatgctcg gtatacacca cgccggagca gcagtaacca
    23281 aacagcggcg cacgccagtt acgctggttg tttatttcgt tgaaggtcat ccagtatttg
    23341 actttatgct tgtagcgttc gaataccact tccgcgaaac ggacaaagaa atcaacgact
    23401 ttacggttgg tccagctacc gtattgctgc accagatgca gcggtatttc aaagtgggag
    23461 agggttatca ccggttcgat gttgtatttc agcagttcat cgaacagaga gtcgtaaaac
    23521 ttcagccctt cttcgtttgg ctgagcttca tcaccttttg gaaaaatacg cgtccaggcg
    23581 atggaagtcc gaaaacattt gaagcccatt tcggcaaata gcttgatgtc ttccttgtag
    23641 tgaccataaa aatcaacggc ttcatggttt ggatagtatt ttcctggcaa gacttctttg
    23701 gtgatttcgc gcggcacgcc gtgtgcgcca ccggtcagaa cgtcacaaat gctcggtcct
    23761 ttgccgcctt tgttccagcc gccttcgacc tgatgagcgg caacggcgcc accccataag
    23821 aaatctttcg gtaaggtgag ttttttcact atcataggct ccagatgagt caattcttac
    23881 aggaaatagt accatgcagc caaacgacat cactttttct caacgtttcc aggatgacat
    23941 tctggctggg cgtaaaacca tcaccatccg cgacgagtct gaatcgcact tcaaaacggg
    24001 tgatgtgctt cgtgtcggac gttttgaaga tgacgattat ttttgcacga ttgaagtcac
    24061 cgcaacctca accgtaacgc tggatacgct gacggaaaaa catgcagagc aggaaaatat
    24121 gaccctgact gaactgataa aggtcattgc cgacatctat cccggtcaga cacagtttta
    24181 tgtgattgaa tttaaatgtc tttaaattga actcacgcct gttagttgaa atttctcatt
    24241 taatttcatg atttttagga gattagtctc aaatcagaat ttattttagc taacaggtgt
    24301 tcactggaac tattctcagt tacgctggag aggtatacat gtgcgtgtac gtttctccgg
    24361 agtaagttat ggttcagaag cccctcatta agcagggata ttcgctggca gaggaaattg
    24421 ccaacagcgt cagtcacggc attgggttgg tgtttggtat cgttgggctg gtgttgctac
    24481 tggttcaggc ggtggatctc aatgccagcg ccacagcgat aaccagctac agcctctatg
    24541 gcggcagtat gatcctgctg ttcctcgctt cgacgctcta tcacgccatt cctcatcaac
    24601 gggcaaaaat gtggctgaag aaatttgacc attgcgctat ttacctgttg attgccggaa
    24661 cctacacgcc gtttttgctg gtggggctgg attctccgtt agcgcgcggg ttgatgattg
    24721 ttatctggag cctggcattg ctggggattc tgtttaaact gaccatcgcg caccgattca
    24781 aaattttatc tctggtgacc tatctggcga tgggctggct gtcgctggtg gtaatttatg
    24841 aaatggcagt taagctcgcg gcgggcagcg ttaccttact ggcggtaggc ggcgtggttt
    24901 attcgctcgg agtgattttc tatgtctgca aacgcattcc ctacaatcat gccatctggc
    24961 acggcttcgt gctcggcggc agtatgtgcc actttctggc gatctatttg tatattgggc
    25021 aggcgtaatg ggtatgcctt tgtaggcctg ataagacgcg ccagcgtcgc atcaggcatc
    25081 ggagcgcaac cgccggatgc ggcgtgaacg ccttatccga tctacgggcc tcgtccctgt
    25141 tgtgataaag gcatcaaatc ccagacatga taagacgcgt cagcgtcgca tcaggcgata
    25201 aatgcctgat gcgatacaga gatttactct tcgagtgaat acggcagcgg ctcgatatgc
    25261 agtgtattcg catcgtcgcg tacgcggaag atgctgtccg gttccatatc gttattcatg
    25321 acgacctgta ccacgacctg accatcttcc agttttaccg cagccagcac cgtaccggta
    25381 cgacgccagt tctcgcccat tttcagctct aagtcttcac cagcttccgg cagtcggctg
    25441 gcgctacctg ccagcaacca gagcgcacgt ttattggcac cacggaattt tgctcgcgcc
    25501 accatctctt gtccggtata acagcctttc ttaaaactga taccgcccag cgcctggaga
    25561 ttggtcgcct gtgggataaa ctgcccgctg ttcgcggcat caatcaccgg gaaacccgct
    25621 tcaatgttta atgccagcca ctgttggcta ttgttcagtt ccgcttcacc gcgcagttta
    25681 tcggtcagca tattggcagt agcttcatcg gttacgatca ggaaacgttc tgccgggtgt
    25741 tcaaaccata gcaaagtggt cgcgccttct ttaactacct gtttttctct cgaaggtagt
    25801 tcactaaaga gattggcgag cgcggcgcgc gcctgaaaac cggcaacacc aagcagcaca
    25861 cgctcgtcgt ctgccgcgat ggtcacttta gagaacaccg catatttttt cagttcagtc
    25921 agctgcggtt cacgcacgct gcgccgttca atccacgcaa agccatcgcc gtcgcggaac
    25981 agacgtaaat tgctccacat tttacctttg gcgtcgcaat gggcggcgag caggtgctga
    26041 ttttctgtca tctggctgac atctgctgtc acctgaccct gcatatattt ttcgctgtcc
    26101 gcgccagtaa tggtggcaag cgcccagtca tcaagcgtca tcagcgtcag cggtaaacgg
    26161 gcagaagccg taggctgacg gggaggaaaa ggtgtaaaag ccataataga gtcctgagtt
    26221 gcttaacggc gtattaataa ctaatggtaa aagagctatg aggcaatgca agtgctttca
    26281 ctacgcgatc tgtgccttct gcgaggcgac ttccaaaaaa atgaagctct tgaattgttg
    26341 tgaattaatt tcgcgatcgc gatggtgttt actgatattc ccgtaaaaga agtcgaaaaa
    26401 cacgttacaa tagccgggta ctggattttc gtgagacagg aagaagatgg acattaacaa
    26461 caaagcccgc attcattggg catgccgccg tggtatgcgc gaactcgata tttcaatcat
    26521 gccgtttttc gaacatgagt acgacagctt aagcgatgac gaaaaacgca tctttattcg
    26581 tctgctggaa tgtgacgatc cggacctgtt taactggctg atgaatcacg gtaaaccggc
    26641 cgatgcagaa ctggaaatga tggtccgact catccagaca cggaaccggg aacgtggtcc
    26701 tgtggcaatc tgatttgcgc gtctcctggc gcgcacagtg gctttccttg ctgattcatg
    26761 ggctggttgc cgctgttatt ttactcatgc cctggccgct cagttacacc ccgttatgga
    26821 tggtgttact ttcgctggtg gtatttgatt gcgttcgcag ccagcggcgt attaatgctc
    26881 gccaggggga aattcgattg ttgatggacg gacgtttgcg ttggcaaggg caggagtgga
    26941 gcatcgtcaa agcaccgtgg atgattaaga gcggcatgat gctgcgttta cgttctgatg
    27001 gcggtaaacg gcaacattta tggctggcag ccgacagcat ggacgaagct gaatggcggg
    27061 atttacggcg gattttgttg caacaagaga cgcaaagata aatatgacgg caaagcatat
    27121 gcgctaagcc gtcagtgaga tcaggcgtaa tgctctgcca tttcgttgag gatttgctcg
    27181 caccagctct gaatacgctc gtcgctaagg tcatactggt tagtttcatc cagcgccaga
    27241 cccacgaaca gttgcccgtc agcaatcacc ggtttcgggc tggtaaattc atatccttcc
    27301 gttggccagt agccgacgaa cttcacgcct ttggtcgaga gtttgtcatg cagcataccg
    27361 agcgcatcga ggaaccactc gccgtatccc agttgatcgc caagcccata cagcgcaaca
    27421 attttacctt caaggttcag gtcgtcgagc tgatcccaga cggcttccca gtcttcctgg
    27481 atttcgccaa aatcccaggt cgggataccc agaatgagca catcgtactg ctccattaat
    27541 ttcggggagt cgtccttgag gttatgtaag gtcaccagtt ctgggccgat aatatcgcgg
    27601 attttttctg ccgccatttc ggtgtaacag gtgctggaac cgtaaaaaag acccatattc
    27661 ataacgtaag cttctcgatt ctgctgtggc ttttgcggct agtgtatcag aatcgcttta
    27721 gtcacggcac aataaggcat aatggatcaa atgagtgacc ataaggggcg caagtgaaac
    27781 aggatctggc acgcatcgag cagtttcttg atgctctgtg gctggaaaaa aatctggctg
    27841 aaaatacgtt gaacgcttac cgtcgcgatc tgtcaatgat ggtggagtgg ttgcatcacc
    27901 gcgggttgac gctggcgacg gcgcaaagtg acgatttgca ggcattactg gcagaacggc
    27961 tagagggcgg gtataaagcc accagctcag cgcgtttgct gagtgcagtg cgccgattgt
    28021 tccagtatct ttatcgcgaa aagtttcgtg aagacgatcc cagtgcgcat ctcgcttcac
    28081 cgaaattgcc acagcgtttg ccaaaagatt taagcgaagc gcaggtcgaa cgtttattac
    28141 aggcaccatt aattgatcag ccactggagc tacgcgataa agccatgctt gaagtgttgt
    28201 atgctaccgg gctgcgtgtc tctgaactgg tcgggctgac aatgagtgat atcagcctac
    28261 gtcagggcgt agtgcgggtc attggtaaag gcaacaaaga gcgcctggtg ccgttaggtg
    28321 aagaggccgt ttactggctg gaaacctatc tggaacatgg gcgtccgtgg ctgttgaatg
    28381 gtgtgtcaat tgacgtgttg tttcccagcc agcgtgcgca gcagatgacg cgacagacct
    28441 tctggcaccg cattaaacat tatgccgtgc tggcgggtat cgacagcgaa aagctgtcac
    28501 cgcatgtgtt gcgtcacgct tttgccactc atttattaaa tcatggtgcg gatttacgcg
    28561 tggtgcagat gctactgggc cacagcgatc tctccaccac gcaaatttat acgcatgtcg
    28621 ctaccgagcg tctgcggcaa cttcatcaac agcatcaccc gcgggcgtga tgtctgaaaa
    28681 gaacgggaag atttatgaag aaaggtttta tgttgtttac tttgttagcg gcgttttcag
    28741 gctttgctca ggctgatgac gcggcaattc aacaaacgtt agccaaaatg ggcattaaaa
    28801 gcagcgatat tcagccagca cccgtggctg gcatgaagac tgtgctgact aacagcggtg
    28861 tgttgtacat caccgatgac ggtaaacata tcattcaggg gccaatgtat gacgttagtg
    28921 gcgcggctcc ggtcaatgtc accaataaaa tgctgctaaa gcagttgaat gcgcttgaaa
    28981 aagagatgat cgtttataaa gcgccgcagg aaaaacacgt catcaccgtg tttactgata
    29041 ttacctgtgg gtactgccac aaactgcatg agcaaatggc agactacaac gcgctgggga
    29101 tcaccgtgcg ttatcttgct ttcccgcgcc aggggctgga gagccaggct gagcaacaaa
    29161 tgaaagccat ctggtgtgcg aaagataaaa acaaagcgtt tgatgatgtg atggctggta
    29221 aagctgccac tccggcaagt tgcgatatcg atattgccga tcattacgca cttggcgtcc
    29281 agcttggcgt tagcggcact ccggcaattg tgctgagcaa tggcacactt gttccgggtt
    29341 accagccgcc gaaagagatg aaagaattcc tcgacgaaca ccaaaaaatg accagcggta
    29401 attaattcgc gtgaaacaac agatacaact tcgtcgccgt gaagtcgatg aaacggcaga
    29461 cttgcccgct gaattgcctc ccttgctgcg ccgtttatac gccagccggg gagtacgcag
    29521 tgcgcaagaa ctggaacgca gtgttaaagg tatgttgccc tggcagcaac taagcggtgt
    29581 cgaaaaggcc gttgagatcc tttacaacgc ttttcgcgaa ggaacgcgga ttattgtggt
    29641 cggtgatttc gacgccgacg gcgcgaccag cacggctcta agcgtgctgg cgatgcgctc
    29701 gcttggttgc agcaatatcg actacctggt accaaaccgt ttcgaagacg gttacggctt
    29761 aagcccggaa gtggtcgatc aggcccatgc ccgtggcgcg cagttaattg tcacggtgga
    29821 taacggtatt tcctcccatg cgggggttga acacgctcgc tcgttgggca ttccggttat
    29881 tgttaccgat caccatttgc caggcgaaac attacccgcg gcggaagcga tcattaaccc
    29941 taacttgcgc gactgtaatt tcccgtcgaa atcactggca ggcgtgggtg tggcgtttta
    30001 tctgatgctg gcgctgcgca cctttttgcg cgatcagggc tggtttgatg agcgcggcat
    30061 cgcaattcct aacctggcag aactgctgga tctggtcgcg ctggggacag tggcggacgt
    30121 cgtgccgctg gacgctaata atcgcattct gacctggcag gggatgagtc gcatccgtgc
    30181 cggaaagtgc cgtccaggga ttaaagcgct gctggaagtg gcaaaccgtg atgcacaaaa
    30241 actcgccgcc agcgatttag gttttgcgct ggggccacgt ctcaatgctg ccgggcgact
    30301 ggacgatatg tccgtcggtg tggcgctgtt gctgtgcgac aacatcggcg aagcgcgcgt
    30361 gctggcaaat gaactcgatg cgctaaatca gacgcgaaaa gagatcgaac aaggaatgca
    30421 gattgaagcc ttgaccctgt gcgagaaact ggagcgaagt cgcgacacgc tacccggcgg
    30481 gctggcaatg tatcaccccg aatggcatca gggcgttgtc ggtattctgg cttcgcgcat
    30541 caaagagcgt tttcaccgtc cggttatcgc ctttgcgcca gcaggtgatg gtacgctgaa
    30601 aggttccggt cgctccattc aggggctgca tatgcgtgat gcgctggagc gattagacac
    30661 actctacccc ggtatgatgc tgaagtttgg cggtcatgcg atggcggcgg gtttgtcgct
    30721 ggaagaggat aaattcgaac tctttcaaca acggtttggc gagctggtta ccgagtggct
    30781 ggacccttcg ctattgcaag gcgaagtggt gtcagacggc ccgttaagcc cggccgaaat
    30841 gaccatggaa gtggcgcagc tgctgcgcga tgctggcccg tgggggcaga tgttcccgga
    30901 gccgctgttt gatggtcatt tccgtctgct gcaacagcgg ctggtgggcg aacgtcattt
    30961 gaaagtcatg gtcgaaccgg tcggcggcgg tccgctgctg gatggtattg cttttaatgt
    31021 cgataccgcc ctctggccgg ataacggcgt gcgcgaagtg caactggctt acaagctcga
    31081 tatcaacgag tttcgcggca accgcagcct gcaaattatc atcgacaata tctggccaat
    31141 ttagcgtcat cttctctata aaaaagagcg tggattgggt acaatcccgc tcttatcacc
    31201 gcattttgac tagctcaata aaagaaatca gaccatgttt gaaattaatc cggtaaataa
    31261 tcgcattcag gacctcacgg aacgctccga cgttcttagg gggtatcttt gactacgacg
    31321 ccaagaaaga gcgtctggaa gaagtaaacg ccgagctgga acagccggat gtctggaacg
    31381 aacccgaacg cgcacaggcg ctgggtaaag agcgttcctc cctcgaagcc gttgtcgaca
    31441 ccctcgacca aatgaaacag gggctggaag atgtttctgg tctgctggaa ctggctgtag
    31501 aagctgacga cgaagaaacc tttaacgaag ccgttgctga actcgacgcc ctggaagaaa
    31561 aactggcgca gcttgagttc cgccgtatgt tctctggcga atatgacagc gccgactgct
    31621 acctcgatat tcaggcgggg tctggcggta cggaagcaca ggactgggcg agcatgcttg
    31681 agcgtatgta tttgcgctgg gcagaatcgc gtggtttcaa aactgaaatc atcgaagagt
    31741 cggaaggtga agtggcgggt attaaatccg tgacgatcaa aatctccggc gattacgctt
    31801 acggctggct gcgtacagaa actggcgttc accgcctggt gcgtaagagc ccgtttgact
    31861 ccggcggtcg tcgccacacg tcgttcagct ccgcgtttgt ttatccggaa gttgatgatg
    31921 atattgatat cgaaatcaac ccggcggatc tgcgcattga cgtttatcgc gcgtccggcg
    31981 cgggcggtca gcacgttaac cgtaccgaat ctgcggtgcg tattacccac atcccgaccg
    32041 ggatcgtgac ccagtgccag aacgaccgtt cccagcacaa gaataaagac caggccatga
    32101 agcagatgaa agcgaagctt tatgaactgg agatgcagaa gaaaaatgct gagaaacagg
    32161 cgatggaaga taacaaatcc gacatcggct ggggcagcca gattcgttct tatgtccttg
    32221 atgactcccg cattaaagat ctgcgcaccg gggttgaaac ccgcaatacg caggccgtgc
    32281 tggacggcag cctggatcaa tttatcgaag caagtttgaa agcagggtta tgaggaacca
    32341 acatgtctga acaacacgca cagggcgctg acgcggtagt cgatcttaac aatgaactga
    32401 aaacgcgtcg tgagaagctg gcgaacctgc gtgagcaggg aattgccttc ccgaacgatt
    32461 tccgtcgcga tcatacctct gaccaattgc acgcagaatt cgacggtaaa gagaacgaag
    32521 aactggaagc gctgaacatc gaagtcgccg ttgctggccg catgatgacc cgccgtatta
    32581 tgggtaaagc ctcttttgtt accctgcagg acgttggcgg tcgtattcag ctgtacgttg
    32641 cccgtgacga tcttccggaa ggcgtttaca acgagcagtt caaaaaatgg gatctcggcg
    32701 acatcctcgg cgcgaaaggt aaactgttca aaaccaaaac cggcgaactg tctatccact
    32761 gcaccgagct gcgtctgctg accaaagcac tgcgtccgct gccggacaaa ttccacggct
    32821 tgcaggatca ggaagcgcgc tatcgtcagc gttatctgga tctcatctct aacgatgaat
    32881 cccgcaacac ctttaaagtg cgttcgcaga tcctctctgg cattcgccag ttcatggtaa
    32941 atcgcggctt tatggaagtt gaaacgccga tgatgcaggt gatcccaggc ggtgccgctg
    33001 cgcgtccgtt tatcacccat cataacgcgc tggatcttga catgtacctg cgtatcgcgc
    33061 cggaactgta cctcaagcgt ctggtggtcg gtggcttcga gcgtgtattc gaaatcaacc
    33121 gtaacttccg taacgaaggt atttccgtac gtcataaccc agagttcacc atgatggaac
    33181 tctatatggc ttacgcagat tacaaagatc tgatcgagct gaccgaatcg ctgttccgta
    33241 ctctggcaca ggatattctc ggtaagacgg aagtcaccta cggcgacgtg acgctggact
    33301 tcggtaaacc gttcgaaaaa ctgaccatgc gtgaagcgat caagaaatat cgcccggaaa
    33361 ccgacatggc ggatctggac aacttcgact ctgcaaaagc gattgctgaa tctatcggca
    33421 tccacgttga gaagagctgg ggtctgggcc gtatcgttac cgagatcttc gaagaagtgg
    33481 cagaagcaca tctgattcag ccgaccttca ttactgaata tccggcagaa gtttctccgc
    33541 tggcgcgtcg taacgacatt aacccggaaa tcacagaccg ctttgagttc ttcatcggtg
    33601 gtcgtgaaat cggtaacggc tttagcgagc tgaatgacgc ggaagatcag gcgcagcgct
    33661 tcctggatca ggttgccgcg aaagacgcag gtgacgacga agcgatgttc tacgacgaag
    33721 attacgtcac cgcactggaa cacggcttac cgccgacagc aggtctggga attggtatcg
    33781 accgtatggt aatgctgttc accaacagcc ataccatccg cgacgttatt ctgttcccgg
    33841 cgatgcgtcc agtaaaataa gcattacgtt atgctaataa ccccggcaaa tgtcggggtt
    33901 ttttaattgt gctgcgcgaa agcagacaac aattttcttg cttcactatt ggctgcctgc
    33961 attaccatcc acggactgaa cgcccacggc gtggcatcaa taccgtgtaa tacatctgct
    34021 aaatcacacc attgataatc catcacttca tcatcgttga tctgtaacgc actgttggtg
    34081 cgtgcggcaa ataccggaca cacttcattt tccacaatgc cattcggatc ggtggcgcga
    34141 tagcgaaagt caggatagat agattcagga ggcgtaattt ccacgccaag ctcataacgg
    34201 caacggcgga tcactgcgtc ttcgttgctt tctcccagtt gtgggtgccc acaaaccgag
    34261 ttagtccaca cgccaggcca tgcttttttg ctcagtgcgc ggcgggtaac taataattgc
    34321 cccttggcat taaacagcca actggagaac gcgagatgta agagggtgtc tgccgtgtgt
    34381 gcggcatact tttccagcgt acccgtggga actccctgtg cattcaataa aatgacgtgt
    34441 tccgtttgca taatttctca catgtaattc tgatcactca tcattataga taattgaaga
    34501 gtgaaatgat taaccaagtg agcgtttatc gacaaccgcc cgttttgagc ggatgccgac
    34561 aggtaaaaac catttaaaaa agtagcatca tatatttgaa gcgactttca atggccattg
    34621 caacacagtc agaaatgaca ggaatagaga gagtaaaaag caacagcaga ctgaatatag
    34681 cgcgcattaa aagatttata ttattctcca tgctcatttt tcttcagctt gcgcatcaga
    34741 agccacatac gtactgtcct gacttttaaa tctttatcag agacggattc cttcaccagg
    34801 tcagcatgat gctgatagcc attaaagaag acgttcagca caacggcgct aagggttgcg
    34861 agcataatgc cgctatgtag cagcggttgc agtacggccg gtaacttaga aaagaaatcg
    34921 tgagagagcg tcggagtcat gccaacgccg agactgatcg ccacaatata gaggttgtaa
    34981 cggttggtgg tgtagttaca gcgcgacaga attcgaatcc ctgtcgccag taccatgccg
    35041 aacatcacta gaccagcgcc gcccagcaca aattgcggaa tggaggctac cagcaccgcc
    35101 atttttggca ccatgccaaa caggattaat ataattcccg aagaaataca cacccagcgg
    35161 ctatgaacgc gcgtcacgct aaccaggcca acgttttgag aaaatgacgt gtgggggaag
    35221 ctgttaaacg tgccgcctat cattgtccct acgccatcga cacgcagccc gcgaataata
    35281 tcgtgtgaag agagtttacg accgactatt tcacccagtg ccaggaacat ccccatcgac
    35341 tcgataaaca cgatgattaa cacggcagtc atggtcagaa tggaaacggg atcgaaaatc
    35401 ggcataccaa acgacatcgg ggtgacaatc gcaaaccaca aggcatcatg tagcccggat
    35461 aaattgactt cattcatcat ccacgaaagt aaaaagccaa atacaatccc cagtaatacg
    35521 gcgacgttgg acataaatcc tttcgcatag cgagtaatga gcaagataaa aattaagacg
    35581 gcaaaggaga tacctgaata aacgggatta ccatattgcg gattcccttt acctccggcg
    35641 gcccagtcaa tacccacctg aatgatgcta agtccgacag aagtaataac cacaccggta
    35701 accagtggcg ggaataaagg catcaagcga ccgataagtg gcgctaataa tgtggtgata
    35761 aaacccgcgg cgatagtggc accaaatatc cccagcaggc caatatccgg gttcatccca
    35821 atggctatca ttggtgttac agcagcaaag gtcaccgaca taatcaccgg caggcggatc
    35881 cccataaagc ggccgatacc gatacattgc aataatgtga cgatcccgca gcaaaagaga
    35941 tccgagctaa tgagcatcgc aatagcttct tttgagaggc ccagtcggtc accaatcata
    36001 agaggaacag cgactgcacc tgcgtacatg acaaggacgt gttgcagacc gagtatgatc
    36061 agctttcctg gtgataatat gcggtcaacc tcatcagttg ggcggtcttg cccagaagat
    36121 gagagaagtt gggaatctat ggcgctcatc agtgtttctc ctttcgcccg ccagagtaaa
    36181 aagcaaccgt ttacgttaat gaaactgtct aaacacatgc tcgtggagtg ccagtttttg
    36241 cgaggaaggg gagttagaga caggaattgc ggaggcaatc acataatcgt ggttaaacca
    36301 cgaaaatgag aagagaacct gacaatggaa ttatctgtaa ttttctcata ttgatatttc
    36361 attaatcatt ctggcatgtc gtactctcgc atttaatcgt ttttatctgg atagcactct
    36421 tttgatcggc aatgttgaaa taatgaaagc ggcatagatt gaggggcaat aatttgaact
    36481 cagtcgcaaa attataatta aaacggtcat gctacctaat atatgcccgt t
//
LOCUS       DAJVUP010000022        36207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.022, whole genome shotgun sequence.
ACCESSION   DAJVUP010000022 DAJVUP010000000
VERSION     DAJVUP010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.022"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(50..1698)
                     /gene="actP"
                     /locus_tag="OQQ75_001027"
                     /pseudo
     CDS             complement(50..1698)
                     /gene="actP"
                     /locus_tag="OQQ75_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cation/acetate symporter ActP"
     gene            complement(1695..2009)
                     /locus_tag="OQQ75_001028"
     CDS             complement(1695..2009)
                     /locus_tag="OQQ75_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HCS1975433.1"
                     /translation="MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLI
                     AFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ
                     AS"
     gene            complement(2141..4100)
                     /gene="acs"
                     /locus_tag="OQQ75_001029"
                     /pseudo
     CDS             complement(2141..4100)
                     /gene="acs"
                     /locus_tag="OQQ75_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418493.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
     gene            4493..5929
                     /gene="nrfA"
                     /locus_tag="OQQ75_001030"
     CDS             4493..5929
                     /gene="nrfA"
                     /locus_tag="OQQ75_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HCS1975434.1"
                     /translation="MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNET
                     FAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVR
                     ETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGC
                     ADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF
                     DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHG
                     KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ
                     SINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM
                     HAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQ
                     IKAEKQDFIKTVIPQWEEQARKNGLLSQ"
     gene            5974..6540
                     /gene="nrfB"
                     /locus_tag="OQQ75_001031"
     CDS             5974..6540
                     /gene="nrfB"
                     /locus_tag="OQQ75_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418495.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HCS1975435.1"
                     /translation="MSVLRSLLTAGVLASGLLWSLNGITATPAAQASGDRYEVTQQRN
                     PDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEP
                     MYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRI
                     KICVDCHSDQRTNPNFNPASVPLLKEQP"
     gene            6537..7208
                     /gene="nrfC"
                     /locus_tag="OQQ75_001032"
     CDS             6537..7208
                     /gene="nrfC"
                     /locus_tag="OQQ75_001032"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HCS1975436.1"
                     /translation="MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDES
                     LCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVD
                     VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL
                     QAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKY
                     GEVSQ"
     gene            7205..8161
                     /gene="nrfD"
                     /locus_tag="OQQ75_001033"
     CDS             7205..8161
                     /gene="nrfD"
                     /locus_tag="OQQ75_001033"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HCS1975437.1"
                     /translation="MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQ
                     AGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQ
                     LYMVVLVLWLAKIFEHDLLAQQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
                     AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVH
                     RMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPM
                     LLKSWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA"
     gene            8181..9899
                     /locus_tag="OQQ75_001034"
     CDS             8181..9899
                     /locus_tag="OQQ75_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014640253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HCS1975438.1"
                     /translation="MDVFLPEVGFLALLLSLGVNVLTPLTAFAGVRLRWPAMMRLTCI
                     GILAQCALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLW
                     VLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEG
                     RDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAASARICWRWALPGW
                     SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRH
                     WSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGW
                     RARDGGPAVRFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPY
                     FNRATLPFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGIVVSSVSRQEISLN
                     LQPGQQVTLAGYTFRFERLDLQAKGNYTSEKAIVALFDHQQRIGELMPERRFYEVRRQ
                     QMMEPSIRWNGIHDWYVVMGEKTGADRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWR
                     GRKRDE"
     gene            9892..10275
                     /gene="nrfF"
                     /locus_tag="OQQ75_001035"
     CDS             9892..10275
                     /gene="nrfF"
                     /locus_tag="OQQ75_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HCS1975439.1"
                     /translation="MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQQQALNIASQLRC
                     PQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQT
                     LVLWALPVVLLLLMALILWRVRAKR"
     gene            10272..10868
                     /gene="nrfG"
                     /locus_tag="OQQ75_001036"
     CDS             10272..10868
                     /gene="nrfG"
                     /locus_tag="OQQ75_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfG"
                     /protein_id="HCS1975440.1"
                     /translation="MKEPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVHAEYQRQRD
                     PLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL
                     RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY
                     AQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD"
     gene            11209..12522
                     /gene="gltP"
                     /locus_tag="OQQ75_001037"
     CDS             11209..12522
                     /gene="gltP"
                     /locus_tag="OQQ75_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate:proton symporter GltP"
                     /protein_id="HCS1975441.1"
                     /translation="MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPA
                     GDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITL
                     ANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEM
                     LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT
                     VANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYS
                     TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID
                     LSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
                     RTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ"
     gene            complement(12713..13401)
                     /locus_tag="OQQ75_001038"
                     /pseudo
     CDS             complement(12713..13401)
                     /locus_tag="OQQ75_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313087.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
     gene            complement(13495..15642)
                     /gene="fdhF"
                     /locus_tag="OQQ75_001039"
     CDS             complement(13495..15642)
                     /gene="fdhF"
                     /locus_tag="OQQ75_001039"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(15223..15225),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HCS1975442.1"
                     /translation="MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLK
                     GYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDA
                     IQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNA
                     INEIDNTDLVFVFGYNPADSHPIMANHVINAKRNGAKIIVCDPRKIETARIADMHIAL
                     KNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSAS
                     EIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRG
                     QNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAH
                     GEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGE
                     HEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHL
                     CPDFYGATYEKMGEQGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPI
                     DKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEA
                     LVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGSCNELVTENLSPITKTPEYKYCA
                     VRVEPIADQRAAEQYVIDEYNKLKTRLREAALA"
     gene            complement(15840..17306)
                     /gene="mdtP"
                     /locus_tag="OQQ75_001040"
     CDS             complement(15840..17306)
                     /gene="mdtP"
                     /locus_tag="OQQ75_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MdtP"
                     /protein_id="HCS1975443.1"
                     /translation="MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKL
                     ADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDA
                     GSQLQVAALGMLNRQRVSANGFLSPYAMDAPSLGMDGPYYTEATVGLFAGLDLDLWGV
                     HRSAVAAAIGAHNAALAETAAVELSLTTGVAQLYYSMQASYQMLDLLEQTRDMIDYAV
                     KAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGAGASDMPE
                     IKPVALPRVQTGIPATLSYELLARRPDLQAMRWYVQASLDQVDSARALFYPSFDIKAF
                     FGLDSIHLDTLFKKTSRQFNFIPGLKLPLFDGGRLNANLEGTRAASNMMIERYNQSVL
                     NAVRDVAVNGTRLQTLNDEREMQAERVEATRFTQRAAEAAYQRGLTSRLQATEARLPV
                     LAEEMSLLMLDSRRVIHSIQLMKSLGGGYQAAPVVEKK"
     gene            complement(17303..19354)
                     /gene="mdtO"
                     /locus_tag="OQQ75_001041"
     CDS             complement(17303..19354)
                     /gene="mdtO"
                     /locus_tag="OQQ75_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter permease subunit
                     MdtO"
                     /protein_id="HCS1975444.1"
                     /translation="MSALNSLPLPVVRLLAFFHEELSERRPGRVPQIVQLWVGCLLVI
                     LISMTFEIPFVALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEP
                     LIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCI
                     VVGLYPTLLMTLIGVLWFPSRAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREAL
                     ALQKLNVFCLADDANWRTQSAWWQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKL
                     ASEINKLQHAVAEGQCWQSDWRISESEAVAARECNLENICQTLLQLGQMNPNTPPTPA
                     AKPPSMVADAFTNPDYIRYAVKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVG
                     SSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERS
                     SYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGIIIGTVVSAVIYTFVWPESEART
                     LPQKLAGALGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQLD
                     SEERALLIERSQTVIRQGRDLLHAWDATWNSAQALDNALQPDRAGQFADALEKYAAGL
                     ATALSCSPQITLEETPASQAILPTLLKQEQHVCQLFARLPDWTAPALTPATEQAQGAT
                     Q"
     gene            complement(19354..20385)
                     /gene="mdtN"
                     /locus_tag="OQQ75_001042"
     CDS             complement(19354..20385)
                     /gene="mdtN"
                     /locus_tag="OQQ75_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter periplasmic adaptor
                     subunit MdtN"
                     /protein_id="HCS1975445.1"
                     /translation="MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYA
                     SADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQI
                     MLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTA
                     QRAAEADLNAVLLQAQSAASAVSGVDVLVAQRAAVEADIALTKLHLEMATVRAPFDGR
                     VISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKT
                     FEGKVDSIGYGVLPNDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGA
                     SAVANLEPQ"
     gene            complement(20404..20679)
                     /locus_tag="OQQ75_001043"
     CDS             complement(20404..20679)
                     /locus_tag="OQQ75_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975446.1"
                     /translation="MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWF
                     FCAIASLILTLITRRIIQRANINLAFVGIIYTALFAVYAMLFWLAFF"
     gene            complement(20888..22873)
                     /gene="yjcS"
                     /locus_tag="OQQ75_001044"
     CDS             complement(20888..22873)
                     /gene="yjcS"
                     /locus_tag="OQQ75_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase YjcS"
                     /protein_id="HCS1975447.1"
                     /translation="MNNSRLFRLSRIVIALTAASGMMVNTANAKEEAKAATQYTQQVN
                     QNYAKSLPFSDRQDFDDAQRGFIAPLLDEGILRDANGKPYYRGEDYKFDINAPAPETV
                     NPSLWRQSQLNGISGLFKVTDRMYQVRGQDISNITFIEGDTGIIVIDPLVTPPSAKAA
                     LDLYFQNRPQKPIVAVIYTHSHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISE
                     NVLAGNIMSHRALYSYGLLLAHNPQGNIGNGLGVTLASGYPSIIAPNKTITKTGEKMI
                     IDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTLHNFYTLRGAKTRDTSKWT
                     EYLNETLDMWGNDAEVLFMPHTWPVRGNKHINDYIGKYRDTIKYIHDQTLHLANQGYT
                     MNEIGDMIKLPPALANNWASRGYYGSVSHNARAVYNFYLGYYDGNPANLHPYGQVEMG
                     KRYVQALGGSARVISLAQEANKQGDYRWSAELLKQVIAANPGDQVAKNLQANNFEQLG
                     YQAESATWRGFYLTGAKELREGVHKFSHGTTGSPDTIRGMSVEMLFDFMSVRLDSAKA
                     AGKNISLNFNMSNGDNLNLTLNDSVLNYRKTLQPQADASFYISREDLHAVLTGQAKMA
                     DLVKAKKAKIIGNGAKLEEIIACLDNFDLWVNIVTPN"
     gene            23126..23443
                     /locus_tag="OQQ75_001045"
     CDS             23126..23443
                     /locus_tag="OQQ75_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HCS1975448.1"
                     /translation="MQPVFLFKKRTGAMGGHVAGTAGFCVAVPAFYSWSMSEVIDKDT
                     RSSERTDYPHYASEVALAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQ
                     RRN"
     gene            23512..23841
                     /gene="yjdP"
                     /locus_tag="OQQ75_001046"
     CDS             23512..23841
                     /gene="yjdP"
                     /locus_tag="OQQ75_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YjdP"
                     /protein_id="HCS1975449.1"
                     /translation="MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDR
                     GRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERR
                     MEDEYGR"
     gene            complement(23988..24746)
                     /gene="phnP"
                     /locus_tag="OQQ75_001047"
     CDS             complement(23988..24746)
                     /gene="phnP"
                     /locus_tag="OQQ75_001047"
                     /EC_number="3.1.4.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism protein PhnP"
                     /protein_id="HCS1975450.1"
                     /translation="MSLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVV
                     KFNDAITLIDAGLHDLADRWPPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPP
                     DEQGCDDLFKHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVA
                     WLSDTAGLPEKTLKFLRNNQPQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRV
                     ILTHISHQFDAWLMENALPSGFEAGFDGMEIGVA"
     gene            complement(24748..25197)
                     /gene="phnO"
                     /locus_tag="OQQ75_001048"
     CDS             complement(24748..25197)
                     /gene="phnO"
                     /locus_tag="OQQ75_001048"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoalkylphosphonate N-acetyltransferase"
                     /protein_id="HCS1975451.1"
                     /translation="MPACELRPATQYDTDAVYALICELKQAEFDHHAFRVGFNANLRD
                     PSMRYPSMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQACGLNVGSKL
                     LAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL"
     gene            complement(25184..25741)
                     /gene="phnN"
                     /locus_tag="OQQ75_001049"
     CDS             complement(25184..25741)
                     /gene="phnN"
                     /locus_tag="OQQ75_001049"
                     /EC_number="2.7.4.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 1,5-bisphosphokinase"
                     /protein_id="HCS1975452.1"
                     /translation="MMGKLIWLMGPSGSGKDSLLAELRLREQTQLLVAHRYITRDASA
                     GSENHIALSEREFFTRAGQNLLALSWHANGLYYGVGIEIDLWLHAGFDVVVNGSRAHL
                     PQARARYQSALLPVCLQVSPEILRQRLKNRGRENTSEINARLARAARYTPQDCHTLNN
                     DGSLRQSVDTLLTLIHQKEKHHACL"
     gene            complement(25741..26877)
                     /gene="phnM"
                     /locus_tag="OQQ75_001050"
     CDS             complement(25741..26877)
                     /gene="phnM"
                     /locus_tag="OQQ75_001050"
                     /EC_number="3.6.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate diphosphatase"
                     /protein_id="HCS1975453.1"
                     /translation="MIINNVKLVLENEVVHGSLEVQDGEIRAFAESQSRLPEAMDGEG
                     GWLLPGLIELHTDNLDKFFTPRPKVDWPAHSAMSSHDALMVASGITTVLNAVAIGDVR
                     DGGDQLENLEKMINTIEETQKRGVNRAEHRLHLRCELPHHTTLPLFEKLVQREPVTLV
                     SLMDHSPGQRQFANREKYREYYQGKYSLTDAQMQQYEEEQLALAARWSQPNRESIAAL
                     CRARQIALASHDDATHAHVAESHQLGSVIAEFTTTFEAAEASRKHGMNVLMGAPNIVR
                     GGSHSGNVAASELAQLGLLDILSSDYYPASLLDAAFRVADDESNRFTLPQAVRLVTKN
                     PAQALNLQDRGVIGEGKRADLVLAHRQGNHIHIDHVWRQGKRVF"
     gene            complement(26874..27554)
                     /gene="phnL"
                     /locus_tag="OQQ75_001051"
     CDS             complement(26874..27554)
                     /gene="phnL"
                     /locus_tag="OQQ75_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnL"
                     /protein_id="HCS1975454.1"
                     /translation="MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSG
                     SGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVI
                     PRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
                     ARGFIVDYPILLLDEPTASLDAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADR
                     LHPMGASS"
     gene            complement(27665..28423)
                     /gene="phnK"
                     /locus_tag="OQQ75_001052"
     CDS             complement(27665..28423)
                     /gene="phnK"
                     /locus_tag="OQQ75_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnK"
                     /protein_id="HCS1975455.1"
                     /translation="MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGK
                     TTLLKSISARLTPQQGEIHYESRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSA
                     GGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNL
                     VTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLV
                     MKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN"
     gene            complement(28420..29265)
                     /gene="phnJ"
                     /locus_tag="OQQ75_001053"
     CDS             complement(28420..29265)
                     /gene="phnJ"
                     /locus_tag="OQQ75_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate 5-phosphate
                     C-P-lyase PhnJ"
                     /protein_id="HCS1975456.1"
                     /translation="MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPM
                     PYGWGTGGIQLTASVIGESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDAT
                     LIQTRHRIPETPLTEDQIIIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYED
                     IARFGHIATTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPP
                     FTRVESLDFDDHPFTVQQWDEPCAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQS
                     EAKNQ"
     gene            complement(29258..30316)
                     /gene="phnI"
                     /locus_tag="OQQ75_001054"
     CDS             complement(29258..30316)
                     /gene="phnI"
                     /locus_tag="OQQ75_001054"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate synthase subunit PhnI"
                     /protein_id="HCS1975457.1"
                     /translation="MYVAVKGGEKEIDAAHALQESRRRGNTDLPELSVAQIEQQLNLA
                     VDRVMTEGGIADRELAALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPLDTTEMRLE
                     RRISAVYKDIPGGQLLGPTYDYTHRLLDFTLLANGEAPTLTTADSEQSPSPHVFSLLA
                     RQGLAKFEEDSGAQPDDITRTPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRN
                     HPFAGEIRSGYIDVSIMPEELGFAVNVGELLMTECEMVNGFIDPPDEPPHFTRGYGLV
                     FGMSERKAMALVDRALQAPEYGEHATGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVD
                     FQAELELLKRLQQEQNHG"
     gene            complement(30316..30900)
                     /gene="phnH"
                     /locus_tag="OQQ75_001055"
     CDS             complement(30316..30900)
                     /gene="phnH"
                     /locus_tag="OQQ75_001055"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnH"
                     /protein_id="HCS1975458.1"
                     /translation="MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPL
                     NIATTSVLLTLADNDTPVWLSAPLSNDIVSQSLRFHTNAPLVNQSELATFAVTDEAIS
                     SEQLNALSSGTAVAPEAGATLILQVVSLSGGRMLRLTGAGIAEERMIAPQLPECILHE
                     LTERPHPFPLGIDLILTCGERLLAIPRTTHVEVC"
     gene            complement(30897..31349)
                     /gene="phnG"
                     /locus_tag="OQQ75_001056"
     CDS             complement(30897..31349)
                     /gene="phnG"
                     /locus_tag="OQQ75_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnG"
                     /protein_id="HCS1975459.1"
                     /translation="MHADIATRQHWMSMLAHSQPAELAARLNALNITANYEVIRTAET
                     GLVQIQPRMGGTGERFFAGDATLTRAAVRLTDGPLGYSWVLGRDKQHAERCALIDALM
                     QQSRHFQNLSETLIAPLDADRMARIAARQAEVNASRVDFFTMVRGDNA"
     gene            complement(31350..32075)
                     /gene="phnF"
                     /locus_tag="OQQ75_001057"
     CDS             complement(31350..32075)
                     /gene="phnF"
                     /locus_tag="OQQ75_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism transcriptional regulator
                     PhnF"
                     /protein_id="HCS1975460.1"
                     /translation="MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAAR
                     FEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPT
                     SEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGIALCLIDHYFADLTLWPTLQ
                     RFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDG
                     ESSPAEYSVSLTRADMIEFTMEH"
     gene            complement(32096..32875)
                     /gene="phnE"
                     /locus_tag="OQQ75_001058"
     CDS             complement(32096..32875)
                     /gene="phnE"
                     /locus_tag="OQQ75_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HCS1975461.1"
                     /translation="MQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDG
                     GNMATFVADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWW
                     VYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLALFIHTTGVLSKLLSEAVEAI
                     EPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIG
                     VTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKHFI"
     gene            complement(33001..34017)
                     /gene="phnD"
                     /locus_tag="OQQ75_001059"
                     /pseudo
     CDS             complement(33001..34017)
                     /gene="phnD"
                     /locus_tag="OQQ75_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418529.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter substrate-binding
                     protein"
     gene            complement(34042..34830)
                     /gene="phnC"
                     /locus_tag="OQQ75_001060"
     CDS             complement(34042..34830)
                     /gene="phnC"
                     /locus_tag="OQQ75_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
                     /protein_id="HCS1975462.1"
                     /translation="MQTIIRVEKLAKTFNQHQALHAVDLNIHHSEMVALLGPSGSGKS
                     TLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLS
                     VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR
                     VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR
                     YCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRIEENAKAA"
     gene            complement(34963..35406)
                     /gene="yjdN"
                     /locus_tag="OQQ75_001061"
     CDS             complement(34963..35406)
                     /gene="yjdN"
                     /locus_tag="OQQ75_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family metalloprotein YjdN"
                     /protein_id="HCS1975463.1"
                     /translation="MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDS
                     AENCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKASYSGFTLVLDSQQVEEGKRW
                     FDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQQPTQ"
     gene            complement(35566..35901)
                     /locus_tag="OQQ75_001062"
     CDS             complement(35566..35901)
                     /locus_tag="OQQ75_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phnA family protein"
                     /protein_id="HCS1975464.1"
                     /translation="MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDTEPAQESDELIV
                     KDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK
                     LKSEFVKKN"
BASE COUNT         7831 a         9709 c        10223 g         8444 t
ORIGIN      
        1 ctggagagga agagtattcc ccggtcaggc gaccggggaa ggggagagat taatgtgcgc
       61 ggccttgctc aacgccaaag ccggtctggg agcggataaa ctgcgcacgg aacagttcac
      121 gctcgcgcgc accttccgct gagttatcgg ttgccgagaa gaaccagatg ccgaggaatg
      181 ccacgctgat agagaacagc gccgggtatt catacgggaa gatggctttt tcgtgaccga
      241 ggatctgtac ccaaatagtc gggccgagga tcatcagcac cactgcggta atcaacccca
      301 gccagccgcc cagcatcgtg ccacgggtag tcagtttcga ccagtacatg gaaagcagaa
      361 tgatcgggaa gttacagctc gccgcgatgg caaacgcaag gcctaccata aaggcgatgt
      421 tctgattctc aaacagcatg ccgaggataa tcgcaatcac acccaaaatc aggacggtga
      481 ttttcgatac ccgcagttct tcacgttcgg tcgcaccttt tttgaagacg ttagcgtaca
      541 agtcatgcga aaccgcggat gcgcccgcca gcgtcagacc cgcaaccacc gcgaggatag
      601 tggcgaaagc aaccgctgaa ataaaaccga ggaacaggtt gccgcccact gcattcgcca
      661 ggtgaacggc cgccatgttg ttaccaccaa tcagatggcc cgccgcgtct ttatattccg
      721 gattcgcacc aaccagcatg atcgcgccga agccgataat aaaggtcaga atatagaagt
      781 agcccataaa cccggtggcg tagaacacgc tcttacgtgc ttcgcgggca tcgctgactg
      841 taaagaagcg catcagaatg tgcggcaagc ccgccgtacc aaacatcagt cccagaccca
      901 gagagagcgc ggagatcgga tctttcacca gcccgcccgg cttcatgatg tcgacacctt
      961 tcgggtgtac cgccatcgct tcgctgaaca gattattgaa gctaaagccg acgtgtttca
     1021 tcaccataaa ggccataaag ctggcaccga acagcaacag cacggcttta ataatttgca
     1081 cccaggtggt cgccagcatg ccgccgaaca ggacgtacat catcatcagc acgccgacca
     1141 gcaccaccgc aatgtgatag ttaaggccaa acagcagctc gatcagttta cctgcgccta
     1201 ccatctgggc gataaggtaa agcgccacca ccaccagaga accacaggcc gaaagaatac
     1261 gaatcggccc ttgtttcagg cggtaagagg ctacatcggc aaaggtgtag cgtcccaggt
     1321 tacgcagacg ttcggcaatc aggaacaaaa tgatcggcca gcccaccagg aagcccagcg
     1381 agtaaattaa gccgtcatag ccggaggtaa acaccagcgc ggagatcccc aaaaatgagg
     1441 cggcggacat atagtcaccg gcaatcgcca gcccgttctg gaagcctgtg atattgccgc
     1501 ctgccgtgta gtagtcgcta cgagaacgta cgcgttttga tgcccagtag gtaatgccga
     1561 gcgtaaacac gacgaaaatc aggaacataa taatcgcctg ccagttcgtt ggctggcgct
     1621 ctacggcccg ctaatagcat ccgcggcgtt agctgcgaaa gggagtgtgg cggcaagcgc
     1681 cgtcagaact cttttcatga tgcttgtacc tcatgcagga cttcattatt aagacggtcg
     1741 aattcgccgt tcgcccgcca gatgtagata ccggtgagaa caaaggagat cacaatcact
     1801 ccaacaccaa ttggaatacc gcgtgtgacg ctggtgttcg gattcagcgg cgtgcccagc
     1861 cagccgggcg cgaaggcgat cagtaaaata aagccgatat aaactgccag cataataatc
     1921 gacaggatgg tggcaaaccg ttgccgtttt tcgactaact ccctgaaatg cgcattgtct
     1981 tctatccgct gataaatagt gccattcatc acagattctc cagaggtaat gtagggattg
     2041 ttttaattcc cgctccctta tgggagaagg ttaacgctcg ggtaaccctt gccgaatgta
     2101 ggccggataa ggcgtttacg ccgcatccgg caattgtggg ttacgatggc atcgcgatag
     2161 cctgcttctc ttcaagcagc ttctcgacta cgccaggatc ggcaagcgtc gaggtatcgc
     2221 ccaggttgct ggtatcgccc gccgcaattt tgcgcagaat acggcgcata attttgccgg
     2281 agcgggtttt aggcagggag tcggtccagt gcagcacgtc tggcgtcgcc agcgggccaa
     2341 tctctttacg cacccagttg cggacttctg cgtacagttc tggtgacggt tcctccccgt
     2401 gattaagcgt gacgtaggcg tagatcgcct gacctttaat attgtgcgga atacctacta
     2461 cggcggcttc ggcaatcttc ggatgcgcca ccagcgccga ctcaatctct gccgtcccca
     2521 gacggtgacc ggagacgttc agcacgtcgt ccacacgccc ggtgatccag taatagccat
     2581 cttcatcgcg acgcgcgccg tcgccgctga aatacatatt tttgaaggtg gagaagtagg
     2641 tctgttcaaa acgttcgtga tcgccaaaca gcgtacgcgc ctgacccggc caggagtcgg
     2701 tgatcaccag gctgccttcg gtagcgcctt ccagcgggtt accttcgtta tcgaccagcg
     2761 ccggttgcac gccgaagaac ggacgtgttg ccgaaccggc tttcagcccg gtagcgccag
     2821 gcagtggcgt gatcatgaaa ccgccagttt cggtctgcca ccaggtatcg accaccggac
     2881 atttctcgtt gccgattttt ttccagtacc actcccacgc ttccgggtta attggctcgc
     2941 ccacggaacc gagaatgcgc agcgacgaac ggtcggtacc ctcgatcgct ttatcgcctt
     3001 ccgccatcag cgcgcggatc gccgtgggtg cggtatagag aatattgacc tgatgcttgt
     3061 ccaccacctg cgccatacgg gcaggcgtcg gccagttggg tacgccttca aacatcagcg
     3121 tggtcgcacc gcaggccagc gggccgtaca gcaagtaact gtgtccggtc acccagccca
     3181 catcggcggt gcaccagtag atatcacccg gatgataatc aaagacatat ttaaaggtca
     3241 gcgccgcgta caccagataa ccgccggtag tatgcagcac accttttggc ttaccggtag
     3301 aaccggaggt gtagagaata aacagcggat cttcggcgtt catctcttcc gcctggtgct
     3361 gatcgctcgc ttgctcaacc aggtcgtgcc accacaggtc gcgcccttcc tgccagtcaa
     3421 ttttcccgcc agtacgcttc agtaccacca catgctctac gctggtgacg ttcgggtttt
     3481 tcagcgcgtc atcaacgttt ttcttcagcg gaatactgcc gcccggcacg cacaccttcg
     3541 tcggaagtga tcaccagtcg tgagttggaa tcaataatgc gcccggcaac ggcttccggc
     3601 gagaagccgc cgaaaatcac cgaatgcacc gcgccaatgc gggcgcaggc cagcatcgca
     3661 accgcggctt ccggcaccat cggcatataa atcgccacca catcaccttt tttaatgccc
     3721 agctcgagca gggtattggc gaagcggcag acgtcgcggt gcagctcttt atagctgata
     3781 tgtttgctct ggctggcgtc gtcgccttcc cagatgatgg cggtacgatc gccgttttct
     3841 tgcagatggc ggtcaaggca gtttgccgcc agattcagcg tgccgtcctc gtaccattta
     3901 atggacacat taccgggggc aaaggaggtg tttttcacct tctggtaagg tttgatccag
     3961 tcaagaattt ttccctgttc gccccagaag gtatcaggta cgttaataga ttgttgatac
     4021 attgcctcgt actgctgagg gtttatcagg caacggtctg cgatgttggc aggaatggtg
     4081 tgtttgtgaa tttggctcat gcttttgttc tccttgtaga atgttaataa tatgtgacat
     4141 aagcgttaaa tgtaggggta ttggcagttt tgtttagtat ttgggcgaca gatcacgcaa
     4201 aagtagaatt gtgcaaataa acggcagggt aatttttgaa ggtcagcaac aaaagttgat
     4261 taattctttg aggaacatgc agttatgcat gctgttgaaa aagaggaaga tactgactaa
     4321 ctctaaagtg gtattttaca tgcacttaca attgattaaa gacaacattc acagtgtggt
     4381 tatttgttac acataggggc gagcaatgtc atgacagtgt aggtgcggtt actgtcgtga
     4441 aaaacaataa aaaccgccat tgcaacaatg gcgcaattcg gatgaagccc ctatgacaag
     4501 gataaaaata aacgcacgcc gtatcttcag cttattgatt ccttttttct ttttcacttc
     4561 tgttcacgct gaacaaacgg cagctcccgc aaaacctgta actgtggaag cgaagaatga
     4621 aacctttgcc ccgcagcatc ccgatcaata tctctcctgg aaagccacct cggaacagtc
     4681 agagcgtgtt gacgccctgg cggaagatcc acggctggtg atcctgtggg cggggtatcc
     4741 cttctcgcgc gattacaaca agccgcgtgg acatgccttt gctgtgaccg atgtgcgtga
     4801 aaccctgcgt accggtgcgc cgaaaaatgc tgaagatggt ccgctaccga tggcgtgctg
     4861 gagttgtaaa agcccggatg tggcgcgtct gatccagaaa gacggcgaag atggctactt
     4921 ccacggtaag tgggcgcgcg gcggcccgga aatcgtcaac aacttaggtt gtgccgactg
     4981 ccataacacc gcctcaccag agttcgccaa aggcaaaccg gagttaaccc tttcccgtcc
     5041 gtatgcggct cgcgcgatgg aagccattgg taaacctttt gagaaagccg gacgtttcga
     5101 ccagcaatcg atggtttgcg gtcagtgcca tgtggagtat tacttcgacg gcaaaaacaa
     5161 agcggttaaa ttcccgtggg atgacggcat gaaagtcgaa aatatggagc agtattacga
     5221 caaaattgcc ttctctgact ggactaactc cctgtcgaaa acgccaatgc tgaaagcgca
     5281 gcacccggaa tatgaaacct ggacagcggg cattcacggt aaaaacaacg tgacctgtat
     5341 cgactgccat atgccaaaag tgcagaacgc cgaaggcaaa ctctacaccg accataaaat
     5401 tggtaatccg tttgataact tcgcccagac ttgtgcgaac tgccataccc aggacaaagc
     5461 tgccttgcaa aaagtggtcg cggaacgtaa gcagtcgatt aacgacctga aaatcaaggt
     5521 tgaagatcaa ctggttcacg ctcacttcga agcgaaagca gcgctggatg caggcgcgac
     5581 ggaagctgaa atgaagccaa ttcaggacga tatccgtcat gcccagtggc gctgggatct
     5641 ggcgatcgct tcccacggca ttcatatgca cgcaccggaa gaaggtttac ggatgctcgg
     5701 tacggcgatg gataaagcgg cggatgcacg caccaaactg gcgcgcctgc tggcgaccaa
     5761 aggcatcacc catgaaatcc agatcccgga tatctcaacc aaagagaaag cccagcaggc
     5821 cattggcctg aacatggaac aaatcaaggc cgagaagcag gacttcatca aaacggtgat
     5881 cccgcagtgg gaagaacagg cacgtaaaaa cggtctgtta agccaataac cccgttccgc
     5941 ctcgcaaggg gcggaaaaca caatggagtg aatatgagcg tattacgttc gttattaact
     6001 gctggggtgc tggcgtcggg cctgttgtgg agcctgaacg gaattaccgc tacccctgcg
     6061 gcgcaggcat ctggtgatcg ctacgaagtt acccagcagc gtaacccgga tgccgcctgt
     6121 ctggactgtc ataaaccaga taccgaaggt atgcatggca aacatgcttc cgttatcaac
     6181 ccgaataaca aattgccggt cacctgcacc aactgtcacg gccagccatc accgcaacac
     6241 cgcgaagggg tgaaagatgt gatgcgcttt aacgagccga tgtacaaggt cggagagcag
     6301 aacagcgtct gtatgtcctg tcatctgccg gaacagttgc aaaaagcgtt ctggccgcac
     6361 gatgtccacg taaccaaagt ggcgtgcgcc agctgccatt ccctgcatcc acagcaagat
     6421 acgatgcaga cgttaagtga caaaggacgg attaagattt gcgtcgattg ccacagcgat
     6481 cagcgcacca atccgaactt taacccggcg tctgttccgt tgcttaagga gcagccatga
     6541 cctggtctcg tcgccagttt ctcaccggcg tcggcgtgct ggcagccgtc agcggcaccg
     6601 cagggcgcgt ggtggcgaaa acgttgaata tcaatggggt gcgttacggc atggtgcatg
     6661 acgagtcgtt atgcatcggc tgtaccgcct gtatggatgc ttgtcgagaa gtgaacaagg
     6721 tgccggaagg cgtctcgcgc ctgacgatta ttcgtagcga gccgcagggc gaatttcctg
     6781 atgtgaaata tcgcttcttc cgtaagtctt gccagcactg cgatcatgcg ccgtgcgttg
     6841 acgtctgccc gaccggtgcg tcttttcgtg atgccgctag cgggattgtc gatgttaatc
     6901 ctgatctctg cgtcggttgt cagtactgca tcgccgcctg tccgtaccgc gtgcgcttta
     6961 tccatccggt cacgaagacg gcggacaaat gcgatttctg ccgtaaaacc aatttgcagg
     7021 ccggtaagct gcccgcgtgc gttgaggctt gcccgacgaa ggcgctgacg tttggcaatc
     7081 tggacgatcc taacagtgag atttcgcaac tgctgcgcca gaagcctact taccgctaca
     7141 agctggcgct gggaaccaaa ccgaagctgt accgcgtacc gtttaaatac ggggaggtga
     7201 gccaatgacg cagacttccg catttcattt tgaatcgctg gtgtgggact ggccgattgc
     7261 catctacctg tttttgattg gtatttctgc cggtctggtg acgctggccg tgctgttacg
     7321 tcgcttctac ccgcaggcgg gcggtgcaga cagtacgttg ctgcgcacca cgctgattgt
     7381 cgggccgggc gcggtgatcc tcggtctgtt gatcctcgtc ttccacctga caagaccgtg
     7441 gaccttctgg aagctgatgt tccactacag ttttacctcg gtgatgtcga tgggggtgat
     7501 gctgtttcag ctttacatgg tggtgctggt gctgtggctg gcgaaaatct ttgaacatga
     7561 tttgcttgcc cagcaacaac gctggttgcc gaagctgggg atcgtgcaaa aggttctgag
     7621 cctgctgacg cccgttcatc gcggactgga aacgctgatg ctggtgttgg cggtgctgct
     7681 gggggcttat accggctttc tgctgtcggc gctgaaatcg tatccgttcc tcaataaccc
     7741 gatcctgccg gtgctgttcc tcttctccgg catctcgtcc ggtgcggcgg tggcgctgat
     7801 cgccatggcg atacgccaac gcagtaaccc gcattccacg gaagcgcact ttgttcaccg
     7861 gatggaaatc cccgtggtat ggggtgaaat cttcctgctg gtggcgtttt ttgtcggtct
     7921 ggcgctgggc gatgacggta aagttcgtgc gctggtggcg gcattaggtg gcggtttctg
     7981 gacgtggtgg ttctggcttg gtgtcgccgg gctggggctg attgtgccaa tgttgctcaa
     8041 atcgtgggtc aatcgcagtt ccggcattcc tgccgtgctg gcggcgtgtg gggccagtct
     8101 ggtcggcgtg ttgatgctgc gctttttcat tctctacgcc ggacagttga cggtggcgta
     8161 agccagaaaa gaggtggttt ctggacgtat tccttcctga agtcggtttt ctggcgttgt
     8221 tgttaagtct cggggtcaac gtgttgaccc cgttgacggc ctttgcggga gtgcggttgc
     8281 gctggcctgc catgatgcga ctcacttgca tcggcattct ggcgcagtgc gcgctcctgc
     8341 tgctcgcctt tggcgtactg acgtattgtt ttctcatcag cgatttctcg gtcatttatg
     8401 tcgcccaaca tagctacagc ctgctgtcgt gggaactcaa actggcggcg gtgtggggcg
     8461 gtcatgaagg ttcgctgctg ctttgggtgc tgctgctttc cgcctggagc gcgctgtttg
     8521 cctggcatta tcggcagcaa accgatccgc tatttccgct gacgctagcc gttttatctc
     8581 tcatgctcgc cgcactgcta ctgtttgtgg tgctgtggtc cgatcccttc gtgcggatat
     8641 ttccaccagc aatcgaaggc cgcgatctca atccgatgct gcaacatccc ggtcttatct
     8701 ttcatccacc gctgctttac cttggctatg gcggtttgat ggtagcggcg agcgtggcgc
     8761 tggcgagtct actgcgcggc gagtttgatg cggccagcgc ccgaatttgc tggcgctggg
     8821 cgttacctgg ctggagtgca ttaacggcgg ggatcatcct cggttcctgg tgggcctact
     8881 gcgaactcgg ctggggcggc tggtggttct gggatccggt ggaaaatgcc tctttattac
     8941 cctggctttc tgccactgcg ctgctgcaca gtttatccct gacacgccag cgggggattt
     9001 ttcgccactg gtcgctgtta ctggcgatag ttactctgat gctgtcgctg ctgggcacct
     9061 taattgtccg ttctggcatt ctggtttcgg ttcatgcgtt cgcgctggat aacgtccgcg
     9121 ccgtgccgtt gttcagcctg tttgcactga ttagccttgc gtctctggct ctgtatggct
     9181 ggcgagcgcg ggacggtggc ccggcggtgc gtttttcggg gttatcgcgg gaaatgttaa
     9241 tcctcgctac gctgttgctg ttttgcgcag tgctactgat cgtgctggtg ggaacgcttt
     9301 atccgatgat ttacggtctg ctgggctggg gacgcctctc cgttggcgcg ccgtatttta
     9361 accgcgcgac gttaccgttt ggtctgttga tgctggtggt gattgtgctg gcgacgtttg
     9421 tctctggcaa acgcgtgcag cttccggcgc tggtagctca tgcgggcgtg ctgttatttg
     9481 ccgctgggat cgtggtttcc agcgtcagcc gtcaggagat cagcctgaat ttacagccgg
     9541 gtcagcaggt gacgctggca ggatacacct tccgttttga gcgcctcgat ctgcaagcca
     9601 aaggcaatta caccagcgaa aaagcgatag tggcactgtt tgaccatcag caacgcattg
     9661 gtgaactgat gccggagcgg cgtttttacg aagtacgtcg tcagcaaatg atggaaccgt
     9721 caattcgctg gaacggcatc catgactggt atgtggtcat gggtgaaaaa accggagcgg
     9781 atcgttacgc ttttcgcttg tatgtacaaa gcggtgtgcg ctggatctgg gggggaggat
     9841 tgttgatgat tgcgggcgca ttgttaagcg gatggcgggg gaggaagcgc gatgaataaa
     9901 ggacttctca cgctactgct gttatttacc tgttttgcgc gcgctcaggt cgtagacacc
     9961 tggcaattcg ccaatccgca acaacagcaa caggcgttaa atattgccag ccagttacgt
    10021 tgtccgcagt gccagaatca aaacttactg gaatccaacg cgccggtggc agtcagtatg
    10081 cgccatcagg tttacagcat ggtggcggag gggaagaacg aagtcgaaat cattggctgg
    10141 atgaccgaac gctacggaga ttttgttcgc tataacccac cgttaacggg tcagacgctg
    10201 gtgttgtggg cgctgccagt ggtgttgtta ctgctgatgg cactgatcct ctggcgagtg
    10261 agggcgaagc gatgaaagag cccaaaatac cggtgaaaat gctgacaaca ctcacgattt
    10321 tgatggtatt tctctgtgtc ggcagttatc tgttaagtcc aaaatggcag gcggtacatg
    10381 cggaatatca gcgtcagcgc gatccgctac atcagtttgc cagccagcaa accccggaag
    10441 cgcagcttca ggcattgcag gataaaatcc gcgctaatcc acaaaacagc gaacaatggg
    10501 cgttactggg cgagtactat ctgtggcaaa acgattacag caattcgctg ctggcgtacc
    10561 gtcaggcgtt gcaactacgt ggtgagaacg ctgaactgta tgcggcgctg gcgacggtgc
    10621 tttattacca ggccagccag catatgaccg cccagactcg cgcaatgatc gacaaagccc
    10681 tcgcgctgga ctctaacgaa atcaccgctc tgatgctgct ggcttccgat gcgtttatgc
    10741 aggcgaatta cgcgcaagcc atcgaactat ggcaaaaagt gatggatctc aactcacccc
    10801 ggatcaaccg gacacagctg gtcgagtcga ttaatatggc gaaattgttg cagcggagat
    10861 cggattaatc atctggtgat gaagattatg ttattgagct gcataaaaaa taatcgaatg
    10921 aacatatgcc aaaaataatc actaatcagt attattgcag attaaacaaa taaaaatctt
    10981 tccataacaa atggttattc attaatcctg acataaactc gcgttattat gcattaatgc
    11041 agcgaaaagc tctgttgtta aagggttgcg caacataccg cgcaaatgat actgatcata
    11101 agcgttaaaa aaatctacaa accaacgcaa cacaattcat gcctggcagt atgtcacgtt
    11161 ctcgcgtttc tgaacgggga acggcgctcc attgaggaag ttattctgat gaaaaatata
    11221 aaattcagcc tggcctggca gattctgttt gctatggtgc tgggcattct cctgggaagc
    11281 tacctgcact accatagcga cagccgcgac tggctggtcg tcaatttgct ctctccggcg
    11341 ggtgatatct tcatccatct gattaaaatg attgttgtgc cgattgtgat ctccacgctg
    11401 gtggtgggta tcgcgggtgt gggtgatgcc aaacagctcg ggcgtattgg cgcgaaaacc
    11461 attatttact tcgaggtgat caccaccgtc gccatcattt tggggatcac tctggcgaac
    11521 gtcttccagc ccggtgccgg ggtggatatg tcgcagctgg cgaccgtcga tatctcgaaa
    11581 tatcagagca ctacggaagc ggtacaaagc agttcccacg gcattatggg cacgattttg
    11641 tcgctggtgc cgacgaacat tgtggcgtcg atggcgaaag gcgaaatgct gccgatcatc
    11701 ttcttctcgg tgctgtttgg tctggggctt tcctccctgc ccgcgacgca tcgtgaaccg
    11761 ctggtgaccg tgttccgctc catctctgaa accatgttta aagtgactca catggtgatg
    11821 cgttatgcac cggtgggtgt gtttgcgctg attgcggtga cggtggctaa ctttggtttc
    11881 tcttctctgt ggccactggc gaaactggtg ctgctggtgc atttcgccat tctgttcttc
    11941 gcgctggtag tgctgggaat tgtggcgcgc ctgtgcgggt taagcgtctg gatcctgatt
    12001 cgtattctga aagatgagct gattctggcg tactccactg ccagctctga aagcgtactg
    12061 ccgcgaatta ttgagaagat ggaagcctac ggagcaccgg cgtcgatcac cagcttcgtg
    12121 gtgccgaccg gttactcttt taaccttgat ggttcgacgc tgtatcaaag tattgccgct
    12181 attttcatcg ctcagctgta tggcattgac ctgtccatct ggcaggaaat cattctggtg
    12241 ctgacgctga tggtgacctc gaaggggatt gctggcgtgc cgggcgtgtc gtttgtggtg
    12301 ttgctggcaa cgctgggtag cgtaggtatt ccgctggaag gtctggcgtt tattgctggt
    12361 gttgaccgta tcctcgacat ggcgcgtact gcgctgaacg tggtgggtaa tgcgctggcg
    12421 gtgctggtga ttgccaagtg ggaacacaaa tttgaccgca aaaaggcgct ggcttatgag
    12481 cgtgaagtgc tgggcaaatt tgataaaact gcggatcaat aattgaagat tgccggggtt
    12541 atccacccgg caatgtgtgg atgcctgatg cgacgctggt gcgtcttatc aggcctacgc
    12601 cagacagcgc aatagcctga tttagcgtga ttttgtaggt cggataaggc gtttacgccg
    12661 catccgacat caacgcctga tgcgacgctt aacgcgtctt atcaggccta ccttaaccgt
    12721 tggttaattt ttcaaactct tcacacccgg tatcaaaccc ttccatacag ctcaggttca
    12781 accagtgcag cgccttttgt ttgttcttct cgataaaacc ttcttcaccg tttaagaaca
    12841 tcattcccgc ccagtactcg gaataaccgg ttcgggaaat tgcagagctg cgtttgaaat
    12901 actaggttgc cttgtcatcg tcggccttaa tacccacgcc gttggcgtaa atcaaaccaa
    12961 gcagcatttg ggcatcgacg gcagagtcgt tctccagatc ttccgaggct tttctaacag
    13021 cgaaatcgcc tttggataat ccggtttacc cgcttgagta tttaccagaa tatgcgccag
    13081 cgttacttca ccttctttac tgcccgcttg cgccgctttc tctgcaagaa cttttgcttg
    13141 tggatagtcc agactgcccg gattggtgat tttgatctgc gccaacagcg cgcaggcatc
    13201 agcatcaccg ctgtcggcgg ctttctgtgc ccaatattcg gctttgctca aatcgccgga
    13261 gctaaaccag ctgtcggcaa gaaaatattg tgcgcgtcgg tccccggcct ctgctgcctt
    13321 taaatactgg ctgccaggct cggagtcgtt ggcgtgggca aagaatgtca aaaacaacat
    13381 caatgcgata atttttttca ttttgataat acgattgggt agggagtaac cagtataaag
    13441 agttcgaatg gataaaaaaa cagcctccga aaggaggctg tagaaaggac tgtattacgc
    13501 cagtgccgct tcgcgcaggc gagttttcaa cttgttgtac tcgtcaatca cgtactgctc
    13561 ggcggcgcgc tgatcggcga tcggctcgac gcgcacggcg cagtatttgt attccggcgt
    13621 tttcgtaatc gggcttaagt tttcggtaac cagctcgtta caggaaccaa tccaccactg
    13681 gtaggtcatg taaatcgccc ctttgttcgg acgatcgctg acctgcgcac gggtgataat
    13741 tttgccttta cgcgagtgca cccaaaccaa tgcctcatct tcaataccca gacgtttggc
    13801 gtcttcggta ttgatttgtg cgtagccagg ttcatcagcc agcgccgcca gtgccgcaca
    13861 gttaccggtc atcgaacggc aagagtagtg accaacttca cgcaccgttg acagtaccat
    13921 cgggtactcg tcggtgagtt tgtcgattgg cgctacccag tcgcaggtga agaactgcgc
    13981 cagaccgttc ggggtatcaa acttctcttt aaacagataa gaagtcccct gatcggcatc
    14041 tgaagtatcg cggcaaggcc actgaatgaa gccctgttcg cccattttct cgtaagtcgc
    14101 accgtagaaa tccgggcaca gatgacgcaa ctcatcccag atctcctggg tgttgttgta
    14161 gtgcatcgga taacccatac gggtggcgat ttcactgatg atttgccagt ccgttttcag
    14221 atcccatttc ggttcaactg ctttgaagaa acgctggaag ccacggtcag ccgcagtaaa
    14281 cacgccttca tgctcgcccc acgacgttga cggcaaaatg acatccgccg ccgacgcggt
    14341 tttggtcata aagatgtcct gaacgatgac cagttccaga tcttcaaagg ctttacgtac
    14401 tgccgacagc tccgcatcag tttgcagcgg atcttcgccc ataatgtacg cggcacgcac
    14461 ttcgccatgc gctgcgcggt gcggcagctc gctgatgcga tagccggtat gagcaggcag
    14521 gctttccacg ccccaggctt tggcgaattt ctcgcggtta gccggatctt tcacgtactg
    14581 gtatcccgga tacgtatccg gcagcgcgcc catatcgcag gcaccctgca cgttgttctg
    14641 accacgaacc gggtttacac ccgcatgcgg cttaccgagg ttaccggtca gcatcgcgag
    14701 gctggtcaga gaacgcacgg tttccacgcc ctggtagaac tgggttacac ccatgcccca
    14761 caggatggcg gcgcttttcg cctgggcata catccgtgcc gcctgacgaa tctcactggc
    14821 gctgacgccg gtgatatctt caaccgactc cggcgtgtag ccttcaacga ttttacgata
    14881 ctcttcaaag ccttctgtac gggaagcgac gaacgctttg tcgtacagat tttcttcaat
    14941 aatgacatgg cccatcgcat tcaacagcgc gatgttcgag ccgtttttca gtgcaatgtg
    15001 catgtcagca atgcgcgcgg tttcaatttt gcgcggatcg cagacgataa ttttcgcccc
    15061 gttacgttta gcgttaatta cgtgattcgc catgattggg tgggaatccg ccgggttgta
    15121 cccgaaaacg aacactaaat cggtattatc aatttcgtta atagcattgc tcattgcgcc
    15181 attaccgacc gattggtgca gacctgcaac cgatgggccg tgtcagacac gagcgcagca
    15241 gtcaacgtta ttggtaccaa taacggcgcg cgcaaatttt tgcattacat agttggtttc
    15301 gttacccgta ccacgcgagg agccggtcgt ctggatggca tccggaccgt acttctcttt
    15361 gatggcgctc aggcgctcgg caacgtaatt cagtgcctca tcccaggaaa caggttcgag
    15421 tttgccgcca cgctggcgac ggatcatggg ggttttcagg cgcggggtca ggatctgggt
    15481 atcgttaatg aagtcccagc cataataacc cttcagacac agggtaccct ggttggtttt
    15541 cccctgcgct gcctccgccc ggacgatttt gccgttatcg acgaccaggt tgattttgca
    15601 acctgatgcg caataggggc aaaccgtgac gacttttttc atcggtctcg ctccagttaa
    15661 tcaaatcacg catacgcgct ctcgactaca gtatgcatct tttatgccac attttatttg
    15721 gggtcattcc ctgatattac gggcactatt tattcaaaac tctgacgaaa aacaggctgt
    15781 cgtcagtttt gacgtgacga aacgaaatac cgcgtgacag ccatcacgcg gcagacattt
    15841 tattttttct cgacgacggg agccgcctga tacccgccgc ccagcgattt catcaactga
    15901 atgctgtgga tcacccggcg gctgtccagc atcagtaatg acatctcttc ggcaagcact
    15961 ggcaaccggg cttcggtggc ctgtaagcgg ctggttaagc cgcgctgata ggcggcctcg
    16021 gcagcgcgct gggtgaagcg cgttgcttcc acgcgttcag cctgcatttc tcgttcgtcg
    16081 ttgagcgttt gcagacgcgt gccgttgacg gcaacgtcac gcaccgcgtt cagtactgac
    16141 tggttgtaac gttcaatcat catgttgctg gcggcgcgag tgccttcgag attggcattc
    16201 aaccgtccac cgtcaaacag cggcaatttc agacccggga tgaagttgaa ctggcgactg
    16261 gtttttttga ataaggtatc caggtggatg gagtccagac cgaaaaacgc tttgatatca
    16321 aagctcgggt agaacagtgc ccgcgcggaa tccacctgat ctaatgacgc ctgaacatac
    16381 cagcgcatgg cttgcagatc cgggcgtctg gcgagcaact cataagagag tgtcgccgga
    16441 atgccggtct ggactcgtgg taatgccacc ggtttgatct ccggcatatc gctggccccc
    16501 gcgccaatca atgcacgcag agattctcgc gtttcggtga tttgcccttt gacggcagca
    16561 atttgtttat cgaccgccag aatctgtgcc cgcgcgccgt ggaaaggcac ttgtgcttcc
    16621 agaccgtgcg ccactttact ctggtgcgct ttcaccgcgt aatcaatcat atcgcgagtt
    16681 tgttctaaca gatcgagcat ctgatagctg gcctgcatac tgtaataaag ctgcgctacg
    16741 cccgtggtca gcgatagctc tactgctgcg gtttctgcca gcgcggcatt atgcgcgcca
    16801 atggcggcgg caaccgctga gcgatgcaca ccccacaaat caagatccag tccggcaaac
    16861 aaacctactg tggcttccgt atagtacggc ccgtccatac ccagtgaggg cgcatccatc
    16921 gcataagggc ttaaaaagcc gttcgccgag acgcgttggc ggttgagcat ccctaacgct
    16981 gcgacctgta attgtgaacc ggcatctaac aaatcggcct gggactgcgc tttttcttcc
    17041 cgcagtttcg cttcggcgag ggtgtgtgaa ccacttagcg tccgttggat cagcgcatcc
    17101 agctgcgggt cattgagttg tttccaccac tgcgcctgcg gccagccgga gctggcaaga
    17161 tgaatatcgt cggccagttt gatttgttcc ggtttgagct gttgatgagg tgcagaatcc
    17221 ttacgtacca gggcacagcc ggaaatcagc gtcgtgctgc cgagaatgct gcacaacagc
    17281 agacgtgaaa gttgacgatt gatcattgcg tggctccttg tgcctgttcc gtggcgggcg
    17341 ttaatgccgg ggctgtccag tctggcaagc gggcgaaaag ctggcagacg tgttgctcct
    17401 gttttaataa ggtgggcagg atggcctgcg aggcgggtgt ctcttcaagc gttatttgag
    17461 gagaacagct gagtgcggtt gccagaccgg cagcgtattt ttccagggcg tcggcaaact
    17521 gacctgctct gtccggctgt agtgcgttat ccagcgcctg cgccgagttc caggtggcat
    17581 cccaggcgtg aagaagatcg cggccctgac gaataaccgt ttgcgaacgt tcaatcagta
    17641 aggcgcgttc ttcgctgtcc agttgacgct ccagcgccac gcgttggcac atctcttcac
    17701 aggcattaaa cgccgcatgc agacctatac gaatttgcag ataagtgcgc agagccgtga
    17761 cttcctgctg gcgtgggatc cgcattactt tacttagcat acccagcgca ccggctagtt
    17821 tttgcggcag agtgcgcgct tcactttcag gccagacaaa ggtgtaaatc accgcggaca
    17881 ccacggtacc aatgatgata cccagggcgc gatcgcgaat ttccaccagg tcgtacactg
    17941 ggccaaaaac gttttcgagc gtggcgagcg cgaaggtgac gaccatctgt gtgccgatat
    18001 aagaagagcg ttcagagctg gtggcaatcc atgcgcccaa caggaaaatc ggtgccagca
    18061 caaacagcaa ttcgacaata ttgtccagcc agggcatgac cagtagcgtg aataacagcg
    18121 ccagaatcgc gccgcaaaag gccccgccaa aacgcagcac catcttctgg tacgacgaac
    18181 cgacatttgg attagcgacg atcacgcagg tcagcataca ggtgtgaatg ccttcccagt
    18241 ccacgccgct gtaaaaggtg taacagatca aacaggcgag caatgttttt accgcgtagc
    18301 gtatatagtc tggattggta aaagcatcgg cgaccattga tggcggtttg gcggcgggcg
    18361 ttggcggcgt attcgggttc atctggccca gttgtaacaa cgtctggcag atattctcca
    18421 ggttacattc ccgtgccgcc accgcttcac tttcactgat ccgccagtcg ctttgccagc
    18481 actgaccttc agcaacggca tgctgcagct tgttgatttc tgaggctaat ttttgccgaa
    18541 attcaataat tgcctgagaa tcagcaaaag aggtgggatc gtagcgattc agcgtcgagt
    18601 aaatgtaggt taccgttgcc acgcagcttt gccaccatgc gctttgagtt cgccagttgg
    18661 catcgtccgc gagacaaaag acattcagtt tttgcagcgc cagcgcctct ctttcaatcc
    18721 gcgtttcggg tagcggtgcg aggctgtctg tcaggtgact aatggcatca tcaagccgat
    18781 cattaagcgc ctgatgcatt tgcgaaatgg cacgactggg aaaccacagc acgccgatta
    18841 acgtcatcag caaggttgga tagaggccaa caacgataca ccacagcgtt aagcgcacga
    18901 ccacttccgg atagtcgagc atggcgggga aggtttgccc gtaaatggcg acaatggcga
    18961 cagcgaaaaa gaccagtccc agccgatggg tgcgcatcaa aaacatgcag cccatcagga
    19021 tcggcccggc gatgatcaat cggatcaacg gttcgccgta tgaccatttg tagatcaaaa
    19081 acaggctgcc gatctccagc accgtggcaa ccacaaacaa gatcgccaca aatttggtgt
    19141 aaaacgcgtt cgactgaata ccgtaaaaca gcactgccag cgataacgcc acaaaaggga
    19201 tctcaaaagt catcgagatc agaatcacca gcaggcagcc tacccagagt tgcacgatct
    19261 gcggcacgcg gccgggtcgc cgctcgctta actcttcatg aaagaacgcc agcagcctga
    19321 ccaccggtaa tggcagggag ttgagcgcgc tcattattgc ggctcaagat tagcgactgc
    19381 cgaagcgccg atgcggaaca tttccgggtc aggtttatcg accatgattt tgaccggaaa
    19441 acgctgggca acgcggaccc agttaataga gcgagaaact ttcggcaggc cgcccagcac
    19501 caggccgccg tcattcggta gcacaccgta gccaatcgaa tccactttac cctcgaaggt
    19561 tttgccgctg tcactcatca ggcgaatcgt tgcgggtgta cctgagcgaa tatttttcag
    19621 atcggtttcg cggaagttgg cgatcacgta ccagtgacga gtgtcgatta gggtaaaaat
    19681 agggcgcatg gcagaagcaa attgcccgac ggaggttttg agggaaatga cccggccatc
    19741 aaacggcgcg cgaacggtcg ccatttccag atgcagtttg gtcagggcaa tatccgcttc
    19801 gaccgccgca cgctgggcaa ctaatacatc cacgccgctg acggcgctgg cggctgactg
    19861 cgcctgtaac aatacggcat taagatccgc ttctgcggcg cgctgcgccg ttcttgcacg
    19921 gtcaacatct tccgctgaga caaaaccttc tttcagtaat ggctcggtgc ggcgtaatgt
    19981 atctgtggcc tgtttcgcgg cggcacgtgc tttttctacc gtggcattaa ccgagtcggc
    20041 accaaactgt tgggcgtcaa cgctacgctg ggtgagcata atttgcttat ccagcgccgc
    20101 gagggaggct tcagctttcg ccagattggc ttcgtacggg cgcgggtcaa tgcggaacag
    20161 caaatcgccc tgtttgactg cctggttgtc ggtgaccgcc agttctacaa tgcggccgct
    20221 gacttccggc accacatcaa tggtatctgc tgacgcgtaa gcgtcattag ttgatggcgc
    20281 actgtctacg cgccagataa cgaaaacaag ggcaaccagc gccaacgcaa ccactaacag
    20341 agcagggaat ttactgcgag gagctttttt cggcgtactt tccatgagcg cgtctcaaat
    20401 agattagaaa aatgccagcc agaacagcat ggcgtagaca gcaaaaaggg cggtataaat
    20461 aattccgaca aatgccagat tgatatttgc ccgctgaata attcgcctcg tgattagcgt
    20521 caaaataagg ctggcaatgg cgcagaaaaa ccagctggga taataagcgc cgatcaccgg
    20581 gattgccgga gataatgagc atcccgaaac catgaagacg ggaattatcc aggctgtttt
    20641 tttgagttgc atcgccatgc gagagagaac tgttggcata ttaaatacat cctgtttgct
    20701 gcgaacaata tctgtagtga atatcaatat ccattgaagg cgtcagtatg gctattttct
    20761 tgatgaataa aaatagcttt attcagccac cgcattcata acttatatat tttatgtgtt
    20821 aattgattgt atgtattttt ataataaatg cttttggggg cttaagcgcc cccaaaagtg
    20881 agtggcatta atttggggtt acgatattca cccacaaatc gaaattatcc agacaggcaa
    20941 taatttcttc cagtttcgcg ccattgccaa taattttggc tttcttcgct tttaccagat
    21001 ccgccatttt ggcttgtcct gtcagcacgg cgtgcagatc ttcacggctg atgtagaaag
    21061 aggcgtcggc ttgcggttgc agtgttttac ggtagttaag cacgctatcg ttcagcgtca
    21121 ggttgaggtt atcgccgttg ctcatattga agttcaggct gatattttta cccgcagctt
    21181 tcgcgctatc gaggcgaacg gacataaagt cgaacagcat ttcgaccgac atcccgcgaa
    21241 tggtgtccgg ggaaccggtg gtgccgtggc tgaacttatg caccccttcg cgcagctctt
    21301 tcgcgccggt caggtagaaa ccgcgccagg tggcggactc ggcctgatag cccagctgtt
    21361 caaagttatt cgcttgcaga ttcttcgcga cctggtcacc cgggttggcg gcaatcacct
    21421 gtttcagcag ttctgccgac cagcggtaat caccttgctt gttcgcttct tgcgccaggc
    21481 tgatgacacg ggcagaaccg cccagcgcct gcacgtaacg tttacccatc tccacctgac
    21541 catacggatg caggttagcc gggttaccgt cgtaatagcc aagatagaag ttatacaccg
    21601 cgcgggcgtt gtggctgaca gaaccgtaat agccacggct ggcccagtta ttggcaagtg
    21661 caggcggcag tttaatcatg tcgccgattt cattcatggt gtagccctgg ttcgccaggt
    21721 gcagggtctg gtcgtgaatg tacttgatag tatcgcgata tttaccaata taatcattga
    21781 tatgcttatt gccccggacc ggccaggtgt gcggcataaa caggacttcc gcgtcgttac
    21841 cccacatatc cagcgtttcg ttcagatact cggtccactt gctggtgtcg cgggttttcg
    21901 cgccgcgcag agtgtagaag ttgtgcaggg tatgcgtggc gttctcggcg gtacacagcg
    21961 ctttcagggc cggaatatag aagtgcattt cggctggtgc ttcgctacct ggggtcatca
    22021 ggaagtcaaa ctccaggccg tcgataatca tcttctcacc ggttttggtg atggttttgt
    22081 tcggtgcgat gatgctcggg tagcccgatg ccagcgttac gccaagacca ttgccgatgt
    22141 taccctgagg gttatgcgcc agcagcaggc cgtaggagta aagtgcacgg tggctcataa
    22201 tattacccgc cagtacgttt tcgctgatgg cttcgtccat aaagccagca ggggcgataa
    22261 cctgcacttt accggatttc acatcagctt cagagataat gcctttcacg ccgccatagt
    22321 ggtcggtatg gctgtgggta taaataaccg caacaatcgg tttttgcggg cgattttgga
    22381 agtaaaggtc aagggcggct tttgcgctcg gtggcgtcac cagcgggtcg atgacaataa
    22441 tcccggtatc accttcgata aaggtgatgt tggagatatc ctgaccgcga acctggtaca
    22501 ttctgtcggt gactttaaac aggccggaaa taccgtttaa ctgcgactga cgccacaggc
    22561 tagggttaac ggtttcgggc gcgggcgcat tgatatcaaa tttataatct tccccgcgat
    22621 aatatggttt gccattagca tcgcgcagaa taccttcatc cagcagcgga gcgataaatc
    22681 cacgctgagc gtcgtcaaaa tcctgacgat cgctaaacgg taatgatttg gcgtaattct
    22741 gattaacctg ttgggtatat tgagtggcgg ctttcgcttc ctctttcgcg ttagcggtat
    22801 ttaccatcat gccgctggcg gcagttaacg caataacaat tctgctcaaa cggaataacc
    22861 gagagttatt catataaatc tccatttatc atttatgtcg taaatatgta atccatacaa
    22921 aatacgtcat ttaaagctgg ggttatcata attgggaatt tgcgacttta ataagtggaa
    22981 gtgtgagctg aacgatccat tttattaggc atttgtgctg aagagagaaa attacgcgaa
    23041 tttattatct ctgtaaataa tatgaggtgt tttatatatt tattatatat attgtacttc
    23101 ggcaaatact gagcacaatt tatcaatgca accggtgttt ctttttaaaa aacgtaccgg
    23161 agcaatgggc ggtcatgtcg ctggcaccgc aggattctgc gttgctgtgc cagcctttta
    23221 ttcatggtca atgagtgagg tgattgataa agacaccagg tcgtcagagc gcactgatta
    23281 tccgcattat gccagtgaag ttgcactggc ttttggttca cgagtggttg gcctcgaact
    23341 ggcaaaaatg attgtggatg cgtggctggg cgcacagtac gaaggcggtc gtcatcaaca
    23401 acgcgtggag gcgattacgg caatagagca gcggagaaat tgagattcat ccactacttg
    23461 catggatgag taatgattaa tgtggataga gtttcttttt gaggttggct aatgaaacgc
    23521 tttccgctat ttcttttatt caccctgctc acgctgtcca ccgttccggc ccaggccgat
    23581 attatcgacg acaccattgg caatattcag caggcgatta acgacgctta taaccctgac
    23641 cgtgggcgag actatgaaga ttcgcgcgac gacggctggc agcgtgaagt gagcgacgat
    23701 cggcgcagac aatatgacga ccgccgccgc cagtttgaag atcgccgcag gcagctggac
    23761 gatcgccagc gccagcttga tcaggagcgt cggcagctag aagatgaaga gcggagaatg
    23821 gaagatgagt atgggcgatg aggttgggta tggagcaggc atcgcccctc accccaatgg
    23881 ggagagggag aaaaccagcg caatattcaa tatcgagcac aatcggtccc ctcgcccctc
    23941 tggggagagg gttagggtga gggggccagc gcgcacattc cctctcatca cgccacccca
    24001 atctccatcc catcaaatcc cgcctcaaac cccgacggca gtgcgttttc catcagccac
    24061 gcatcaaact ggtggctgat atgggtcaga atcacccgtg gcgagcggat aacctgattc
    24121 agcgccagca cggtgtttaa atcacagtga ctacgtggcg catcctcgcg cggcgggtgg
    24181 ctgcaatcaa tcaccattac ctgcggctga ttattgcgta aaaatttcag cgttttttcc
    24241 ggcaagcctg cggtgtcaga cagccacgcc acccggctgt gtgccgtttc cagcagataa
    24301 ccgaaggtca gttttgagtg gttgagcggc aggggcgtga cctgtaaccc ctgcaaatca
    24361 aacaccacaa acggttccac cgtgtggctg aaatcaagca ggcccggatg tttaaacaga
    24421 tcgtcgcagc cctgttcatc cggcgggccg taaaccggga tcggatcgcc cacgccccag
    24481 cgcagcggga atagcccctg cacgtgatcc atatggtagt gcgtcagcaa aaactgctgg
    24541 aacgatccgg gcggccagcg atcggcgaga tcgtgcagcc cggcgtcgat cagggtgatt
    24601 gcgtcgttaa acttcactac gccgctgcat ggctggcggc gatactgcgg tgagcgccgc
    24661 gctctggcgc aggctacgca ctcgcagccc catgccggaa cgccctgtgc gccgccggtg
    24721 ccggtgagcg tgagggtcag gctcatgtta cagcgccttg gtgaagcgga agtggctctg
    24781 ctcgtagcct tcacgcaggt aaaaacggtg cgcgtcgtgg cgcttcacgt tggtggaaag
    24841 ttcggtcatt tcggccccgg cctggcgggc ttcttcttct gcccacgcca gtaacttact
    24901 gccgacgttc agaccgcacg cctgcggcat caccaccagt tcctgaattt cgccgatcca
    24961 gttgacatga tgcagatgaa actgcaaatg caggccgatc atgccgacaa cttcgccatc
    25021 cagcagcgcc agatggtagc gcatgctcgg gtagcgcatg ctcgggtcgc gcaggttggc
    25081 gttaaagccc acgcgaaacg cgtggtggtc aaactccgcc tgttttagct cacaaatcag
    25141 cgcgtaaacc gcgtcggtat cgtactgcgt ggccgggcga agctcacaag caggcatggt
    25201 gtttctcctt ctgatgaatc agcgtcagca gtgtgtcgac cgactggcgc aggctgccgt
    25261 cattgttgag cgtatggcaa tcctgtggag tatagcgggc ggcgcgcgcc agccgggcgt
    25321 taatttcact ggtgttttca cggccacggt ttttcaggcg ctggcgcagg atctccggcg
    25381 aaacctgtaa acagacgggc agcagcgccg attgatagcg cgcccgtgcc tgcggcaaat
    25441 gcgcgcgtga accgttgacg actacgtcga atccagcgtg cagccagagg tcaatctcga
    25501 tgccgacgcc ataatacaga ccgttagcgt gccagcttaa ggccagcagg ttttgccccg
    25561 cgcgggtaaa aaactcccgc tcactcaggg cgatatggtt ttcacttccg gcgctggcgt
    25621 cgcgcgtgat gtagcgatgc gccaccagta actgcgtttg ttcccgcagg cggagttccg
    25681 ccagcaggct gtctttcccg gagccggacg gccccattaa ccaaatcagt tttcccatca
    25741 tcagaacacc cttttaccct gacgccagac gtggtcgata tgaatgtgat tgccctggcg
    25801 atgcgccagc accaggtcag cgcgtttacc ctcgccaatc accccgcgat cctgaagatt
    25861 cagcgcctgc gccggatttt tggtcaccag cctcaccgcc tgcggtagcg taaagcggtt
    25921 gctctcgtca tcggcgacgc ggaacgccgc atccagcagg ctggcggggt agtagtcgga
    25981 agagaggata tccagcagac caagctgcgc cagttcactg gccgccacat tgccggagtg
    26041 cgagccgcca cgcacgatat ttggcgcacc catcagcacg ttcatgccat gcttacgcga
    26101 ggcttccgcc gcttcgaacg tggtggtaaa ttcggcgatc acgctgccaa gttggtggga
    26161 ttcggcaacg tgggcgtgcg tggcgtcatc gtggctggcg agcgcaattt gtcgcgcgcg
    26221 gcacagggcg gcgatggatt cgcgattcgg ctgcgaccag cgtgcggcga gcgccaattg
    26281 ctcttcttcg tactgctgca tctgcgcatc ggtgagggag tatttgccct gataatattc
    26341 gcgatacttc tcgcggttag cgaactggcg ctggcccggt gagtggtcca ttagcgacac
    26401 cagcgtcacc ggttcgcgct gaaccagttt ttcaaacagc ggcagtgtgg tgtgatgcgg
    26461 cagctcgcag cgcaggtgca gacggtgctc ggcgcggttg acgccgcgtt tctgcgtctc
    26521 ttcgatggtg ttgatcatct tctccagatt ctccagctga tcgccgccgt cgcgcacgtc
    26581 gccaatcgcc accgcgttca gcacggtggt gatgccgctt gccaccatca gcgcgtcgtg
    26641 gctgctcatc gccgaatggg cgggccagtc gactttcggg cgcggggtga agaatttatc
    26701 gaggttgtcg gtatgcagct caatcaggcc gggtagtagc cagccacctt cgccgtccat
    26761 cgcttctggc aggcggctct ggctttcggc aaaggcgcgg atttcgccat cctgcacctc
    26821 cagcgaaccg tgcaccacct cgttttccag caccagctta acgttattga taatcatgaa
    26881 gaggctccca ttgggtgcag gcggtcggcg acgtcattac gtacagcttc gtcatggaag
    26941 atgccgacga tggctgcgcc acgggctttg gcttcgtgaa tcagttccac caccgcggcg
    27001 ctgtttttgg cgtccagcga ggcggtaggt tcgtcgagca gcagaatggg gtagtcgacg
    27061 ataaagccgc gggcgatgtt gacgcgctgc tgttcgccgc cggagaaggt cgatggtgcc
    27121 aggtgccaca ggcgttccgg cacgttcagg cgggtgagaa gacgcgcggc tttagcggcg
    27181 caggcttcac gcggaacgcc ggtatcgagc agcggctgca tcaccacttc cagtgctgag
    27241 atacgcggga tgacgcgcag aaactggctc acccagccga ctgtggtttt gcggatttcc
    27301 accactttgc gcgctggcgc ggtgaccagg tctacccact cgtcaccgtg tttgatctgg
    27361 atttgacctt cgtcgggtag atagttggcg tacagcgagc gcagcagggt tgatttgccg
    27421 ctgccggagt gaccgtggag caccacgcat tcgcctgcgt tgacggtgag cgaggcacgt
    27481 tgtaagacgg gcaggcgtac gccgttttgc tgatgcagga tgaaggtttt actgacgttt
    27541 tgtacgttaa tcatttttcg cctcgtggtt cgggtgtcgg atgcgacgct gacgcgtctt
    27601 atccgaccta cggggagcgc atttgtaggc cggataaggc gtttacgccg catccggcac
    27661 cggctcaatt ctgcaaaacc gatgacacca gcagttgtgt atacggatgg tgcgggtcgt
    27721 cgagcacgcg gtcggttaac ccactctcca ccacttgccc ctgcttcatc accagcaaac
    27781 ggtccgccag caggcgggcg acgcctaaat cgtgggtgac aatcactacc gcgaggttca
    27841 gctccaccac caggccgcgc agcaggtcga gcaggcgtgc ctgtaccgac acatccagtc
    27901 cgccggtcgg ctcgtccata aacaccagct tcggatgcgt caccaggttg cgggcgatct
    27961 gcaaacgttg ctgcatgccg ccggaaaagg tggtcggcag gtcgtcgatc cggttggcgg
    28021 gaatttccac ctcttccagc cacttctgcg cggtggcacg aatatcgccg taatgacgtg
    28081 ccccggtcgc catcagccgc tcgccgatat tgccgcctgc cgacacctgg cggcgcaggc
    28141 cgtcgagcgg atgctgatgc actacgcccc attcggtgcg cagcaggcga cggcggtcgg
    28201 cctcgctcat tgcgtacagc gaacggctct catagtgaat ctccccctgc tgcggcgtca
    28261 ggcgcgcgga gattgatttc agcagcgtgg tctttccgga gccggactcc ccgacaatgc
    28321 ccagcacttc ccccggccat aaatcaaaag agacatcgct aaagcctttg cccggcgcgt
    28381 aaaggtgggt caggttattg accgaaagta acggttgatt cattggtttt ttgcctcgct
    28441 ctgttggcgg caataatcgg tatcggagca gacaaacatg cggtttccgg cgtcatccag
    28501 caccacttca tcaagatagc tgtgggtcga tccgcagatg gcgcatggct catcccactg
    28561 ctgaacggtg aacgggtgat cgtcgaaatc gagactttcc acgcgggtaa acggcggcac
    28621 cgcatagatg cgcttctcgc gccccgcgcc gaacagttgc agggcgggca tcatgtccat
    28681 ttttgggtta tcgaatttcg ggatcggcga cgggtccatc acgtagcgcc cgttcacctt
    28741 caccggatag gcgtaggtag tggcgatatg accgaagcgg gcgatatctt catacagttt
    28801 cacctgcatc acgccgtact cttccagcgc gtgcatggtg cgggtttccg tttcgcgcgg
    28861 ctcgataaag cgcagcggtt cggggatcgg cacctggaag ataatgatct gatcttcggt
    28921 cagcggcgtt tcggggatgc gatggcgcgt ctggataagc gtcgcatcgt ccgtacgttc
    28981 agtggtgttt accccggtca cgcgcttaaa gaagttgcga atcgacacgg cgttggtggt
    29041 gtcgtctgcg ccctggtcaa tcaccttcag cacgtcgctt tcgccaatca cgctggcggt
    29101 gagctgaatg ccgccggttc cccagccgta gggcatcggc atctcgcgcc cgccaaacgg
    29161 cacctgataa ccggggatcg ccaccgcttt taagatggcg cggcggatca tgcgtttggt
    29221 ctgctcgtcg aggtaggcaa agttgtagcc gctcagatta gccatggttc tgctcctgtt
    29281 gcagacgttt gagtagctcc agttcggcct ggaaatcgac gtagtggggg agtttgaggt
    29341 gcgagacaaa gcctgcggct tcgacgttgt cggcatgtgc cagcacgaac tcttcatcct
    29401 gcgccgggcc tgtcgcgtgc tcgccgtact ccggagcctg caacgcacgg tcaaccagcg
    29461 ccatcgcttt gcgctcgctc atgccgaaca ccagcccgta gccgcgcgtg aagtgcggcg
    29521 gctcatccgg cgggtcaata aaaccgttga ccatttcaca ctcggtcatc agcagttcgc
    29581 cgacgttcac cgcaaatccc agctcttccg gcataatcga cacgtcgatg taaccactgc
    29641 ggatttcgcc cgcgaacggg tgattgcgtc cgtaaccgcg ctgggtagag taggccagcg
    29701 ccagcaaata gccttcgtcg ccgcgcatca actgctgcaa acgggaagaa cgtgaacagg
    29761 ggtaaactgg cggagtgcgg gtgatgtcat ccggctgtgc gccgctatcc tcttcaaact
    29821 tcgccagccc ctgacgcgcc agcaggctga aaacgtgcgg cgacggggat tgttcgctgt
    29881 ctgcggtggt cagcgtcggc gcttcgccgt ttgccagcag ggtgaaatcg agcaggcgat
    29941 gggtgtagtc gtaggttggg ccaagcaact gaccgccggg aatatcttta taaaccgctg
    30001 aaatacgccg ttcgagacgc atctccgtgg tgtcgagcgg ctcgcttacc gccagcttcg
    30061 ccagcgtggt gcggtaggcg cgtagcagga aaatcgcttc gacgttatcg ccgctggcct
    30121 gtttcagcgc cagcgccgcc agttcgcggt cggcaatgcc gccttcggtc atcacgcgat
    30181 ctactgcaag attaagctgc tgttcaatct gggcgacgct cagttcaggc aaatcggtat
    30241 tgccccggcg tcggctctct tgcagggcgt gggcggcgtc gatctccttc tcgccccctt
    30301 tcacggcaac gtacatcagc acacctccac atgagtggtt cgcgggatag ccagcagccg
    30361 ctcgccgcag gtcaggatca ggtcgatgcc gagcgggaac gggtgcgggc gctcggtgag
    30421 ttcgtgcaga atgcactccg gcagctgcgg agcgatcatt cgttcttcgg caatacccgc
    30481 gccagtaagg cgcagcatgc gcccgccgct caggctgacg acctgtaaaa tcagcgtcgc
    30541 gcccgcttcc ggcgcaacag cggtgccgct ggaaagagcg ttgagctgtt cgctggaaat
    30601 cgcctcatcc gttaccgcga aggtcgccag ttccgactga ttgaccagcg gcgcgttggt
    30661 atgaaaacgc aggctctggc tgacgatatc gttacttaat ggcgcggaaa gccacaccgg
    30721 cgtgtcgtta tcagccagcg tcagcagcac gctggtggtg gcgatattca gcggctgcca
    30781 gccgcgtttg agctgatgca gggcgacaat cacgcccggc tcgctcatgg cctttaacag
    30841 gcgacgaaaa ctgtgctggg catcctgcac aggaagcata aaagcggttt ccagggtcat
    30901 gcgttgtctc cgcgaaccat cgtaaagaag tcgacccggc tggcgttcac ttcggcctgg
    30961 cgtgcggcaa tgcgtgccat acggtcagcg tccagtgggg caataagggt ttctgataag
    31021 ttttgaaaat ggcgagattg ctgcatcaac gcgtcaatca gcgcgcagcg ttcggcgtgc
    31081 tgtttgtcgc gccccagcac ccagctgtag ccgagggggc cgtcagtcag gcgtacggcg
    31141 gcgcgggtca gcgtggcgtc gccggcaaaa aagcgttcgc cggtaccgcc cattcgcggc
    31201 tgaatctgta ccaggccggt ttcggcggtg cggatcactt catagttggc ggtgatgttc
    31261 agcgcgttca ggcgggctgc cagttcagcc ggttggctgt gcgccagcat ggacatccag
    31321 tgctggcggg tcgcgatatc tgcgtgcatt cagtgctcca tagtgaattc aatcatgtcg
    31381 gcgcgcgtca ggctgacgga gtactccgcc gggctgcttt caccgtcacg gtggttaagg
    31441 gtgcgcacgc acagcagcgg cgacatattc gggatttcaa gacgctggca ctctttggcc
    31501 tgggcgcggc gggcgctgat ccgcgtctgg ctgcggcgca gcgcaatccc ggtttgctcg
    31561 cgcagaaaat cgtgcagcga gccgctgtcg aagcgttgca gcgtcggcca aagggtgagg
    31621 tccgcaaagt agtggtcgat taaacagagc gcgatgccgt tgacccggcg cagggtgcgc
    31681 aggtggatga cgttctcccc ctcggttatc cccagcgcgt cagcgacgtg accagatgcc
    31741 gggcgcagca ccgacagcag tttttcgctg gtgggatggc tgccctgatc cagcaggttc
    31801 tggctaaaac gcgcctgggc gttgagcggg taatcgaacg ggcgcatcag caccagcacg
    31861 ccgacgccct gacggcgctg tacccagcct ttttccacca gttggtcgat ggcgcggcgc
    31921 agggtgtggc gatttacctc aaagcgcgcc gccagctgct gctcggcggg aagatagtcg
    31981 ccgcagcgat agtgttgacg aagctcctgc tcaagttttg cggctatctc ctgatagcgt
    32041 gttgggtagc tggtcggatg tgtagacaag tgcatagata tcaatgcctc gcttatcaga
    32101 taaagtgctt acgcaaccgt tgagagagga aatccagcag gctgaccgtg acgatgataa
    32161 gcaccatcag ggcgcaggtt tgttggaact gaaaaccgcg aatcgcttcc cacagggtga
    32221 cgccgatccc gcctgcaccg accatgccga cgacggtcgc cgagcggacg ttggattcga
    32281 agcgatagag ggagtaggag atcagcagcg gcattacctg tggcagcacg ccgtaaagga
    32341 tctcttccag cttgttggcg ccggtggcgc gaatgccttc taccgggccg ggttcgatcg
    32401 cttccaccgc ttcggaaagc agcttggaga gcacgccggt ggtgtggata aatagcgcca
    32461 gcacgccagc gaacgggccg agaccgacgg cgaccacgaa cagcatggcg aagaccattt
    32521 cgttaatggc gcggcaggca tccatcaggc ggcgaacggg ctggtaaacc caccacggca
    32581 ccaggttttc ggcgctcatc agaccgaagg ggatggagag aaccactgcc agcgcggtgc
    32641 cccagacggc gatttgcagc gtgacggcca tttcggtgag gtaatcctgc cactggctga
    32701 aatcgggcgg gaagaagtcg gcaacgaagg ttgccatgtt gccgccgtct ttaatcagcg
    32761 taagcggggc catttccgcg ccctgccacg agacgaccag cacggcgaga acaacggccc
    32821 agctcagaag cgagaaccag ctacgcttgg gtggggcgat ggtgatggtt tgcatgtttg
    32881 gctccgttta atgttttctc cctctccctg tgggagaggg ccgggatgag ggcatcagcg
    32941 tgcgcatttc cccctcaccc taaccctctc cctcaaggga gaggggaccg atcgagcaca
    33001 ttactgcacc gctttactca ccgaactcat cgcgcttaac gcgttgttca ggcggtccaa
    33061 gtcatccagc tgcgcctgaa tctcggtggt tttcgccagc ttgtcctgct cattcagtcc
    33121 tttattgctt tttacgccct gcatctcttt aaacagtgcg agctggcgaa tcggcaccag
    33181 ttgcaggtcg ctggaggcgc ggaacggggc ccagcccagg cgttccagca ccgctttctc
    33241 ttccggcgtt tttccgtagt tcataaagaa gtcgtagatc ttgtctttgg tggtttcgga
    33301 gagattcttg cgccagacga tcggatcgcc tgggatcagc ggcgacttcc agatcacctt
    33361 cagttctttc agcttctctg gcgcggaggt tttcagcttg tcgaggtttt cggtgttgtt
    33421 ggtggcaaca tccacctgct tgttggcgac ggccagcgcg ttggtttcat gcccagcgtt
    33481 gacggtgcgc ttaaagtcgc tggcggagat attgtttttg gcaaagacgt agtaaccggg
    33541 gacgaggaag ccagaggtgg agttaggatc gccattgccg aaggtgagat ctttccgctt
    33601 cgccagcaga tcgttcaggt tgttgatcgg actatctttg ttgacgatca acacgctcca
    33661 gtaacctggc gatccatccg ccgcgaccgt ctgggcgaag acctggccgt tggcgcgatc
    33721 caccgcttcc attgccgaca ggttgcctta ccaggcgata tccactttat tgaagcgcat
    33781 tccctggata atgcctgcgt agtctggggc aaagaaggcg ttcaccttca cgcccagctt
    33841 cttctccata tcctgtaaga atggcgtcca ttgcggtttc aggttttgct gtgattccgt
    33901 tgaaataatg ccgaaattca gcgccttttc ctgctcttcg gcgtgtgccg ggcttaacag
    33961 ggtgctgagg ctgaacatgc tggtgaaggc cagcgaggca attatcttag cgttcattcg
    34021 ttttcctcaa tgatggggat gtcaggcagc tttcgcgttc tcttcgatgc gattaatgct
    34081 gcggtagaga tggtcaaaac gttcgttatc aaactgttgg ctgctgccgt cgtagaaaac
    34141 gtgcccctgg cgcagggcga cgatgcgttc gcagtagcgc agggcgtaat ccacctgatg
    34201 cagcgtgacg actacggtga tgccgtcgtt ctgattgatg tcgcgcaggg tgtccatcac
    34261 gatgcgggcg gattccgggt ccagcgaggc gatgggttca tcggccagaa tcaccttcgc
    34321 ctgctgcatc agcgcgcggg caatcgccac acgctgctgc tgtccgccgg agagggtgga
    34381 aacgcgttga tgggcaaaat gcaccatgcc aacgcgggtc agcgcctgta acgcgcgttg
    34441 tttctgctcg cgggtgaacc agctaaaaca ggtgcgccag aacggcgtgc tgccgagcgc
    34501 gccaatcagc acgttctcca gtacgctcag gcgattcacc aggttgaatt gttggaagat
    34561 gtagccggta tgggcgcggc ttttgcggat atcgcgcgcc agacggcctt cgcgctggac
    34621 tgtgcggccc agcagctcga tatggctgcc ggcggattta tcgccggtaa tcaaaccgct
    34681 taagtgacgt aaaagtgtgg atttgccgga acccgacggc ccaagcagag ccaccatttc
    34741 actgtgatga atgttcagat caaccgcatg cagcgcttga tgctgattga aggttttggc
    34801 gagcttctcg acacggataa tcgtttgcat gatgcagcct ccctaaaaaa gtggctccat
    34861 cgtggcggat tattgtgacg atttggttaa ttaaaagtga ctaacagatg aagagttaac
    34921 gggaattcga tgacagtgcg ggagggcggg cctcccggcg ggttattgcg ttggttgttg
    34981 tttgacgaca ttaatcatcc acggtacgcc aaatttatcg gtgactttgc cgaagccatg
    35041 cgcccagaaa gtttcctgcc aggccatttc aatttttccg ttagcggcaa ggttatcaaa
    35101 ccagcgtttt ccttcttcga cctgttgcga atcgagcacc agcgtaaagc cggagtagct
    35161 ggcttttcct gacggtatag catcgctcat catgatgtcg cttccggcaa tgcgcacgtt
    35221 ggcgtgggcg atggcggtat cgggaaattg cattccggaa gggcagttct cggcgctgtc
    35281 ctgcgctgat tttggcattt cgccgaagct gattttatag agcagttccg cgcccaacgt
    35341 acgttgataa taggcaatcg cgtcggaaca gttaccggca aaagagaggt agggacttaa
    35401 cggcatgatg gtgacctcag ttaagagaag ccagttaagt gtagttcgaa atttatacag
    35461 atgagaggga agcctgataa ggcgcggtca gcgtcgcatc aggcagtcgg catcgttgcc
    35521 ggatgtggcg cgagcgcctt atccggctta ccgatcacaa tacaatcagt tctttttcac
    35581 aaactcagat ttcagtttca tcggaccaaa accgtcgatt ttgcaatcga tgttatggtc
    35641 gccttcaacc aggcggatgt ttttcacttt ggtgccaatt ttcagcatcg aagagctacc
    35701 tttcaccttc agatctttaa tgatggtaac gctgtcgccg tcagccagca gattgccgtt
    35761 agcatcttta acgatcagct cgtcgctttc ctgtgcaggt tctgtgtcgt tccattcgta
    35821 ggcacattcc gggcagatgt acatgccgtt atcttcgtaa gtgtattcgg agttgcattt
    35881 tgggcagtgt ggtaatgaca tgtggatttc ctcaaaagtc agcagggcaa aagcgccaaa
    35941 aaacggcaga ttgccgaaaa aggccgcaat tatacacaaa atccctgagt ttgtcggggg
    36001 tactgctgat tttagacgac gatcgttttc atttgaaagg aaacgcaaaa agaaaataat
    36061 ctttttgcct ctatttatta tttaagataa tgttaatgct ctacctgttc tttttttatt
    36121 cacatgatat ttttatcttt ctgacgtttt aaacgcatca gaagacgtta tttattctga
    36181 taaaaaacaa cacactaaat ataaaat
//
LOCUS       DAJVUP010000023        35068 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.023, whole genome shotgun sequence.
ACCESSION   DAJVUP010000023 DAJVUP010000000
VERSION     DAJVUP010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35068
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.023"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..4093)
                     /locus_tag="OQQ75_001063"
     CDS             complement(<1..4093)
                     /locus_tag="OQQ75_001063"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS1975465.1"
                     /translation="MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQSQTWHVAARS
                     EHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQ
                     RNLQLPLKGIADERRRRGETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGL
                     SATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASSTGEDSHA
                     GREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVD
                     AAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLEL
                     GIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC
                     MFAGRLENLTPPHNPLDVLAQQTVAAAAMEALQVDEWYSRVRRAAPWKDLPRRVFDAT
                     LDMLSGRYPSGDFSAFRPKLVWNRETGILTVRPGAQLLAVTSGGTIPDRGMYSVLLPE
                     GEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVIVTPAPGRSARLPF
                     WRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTNANIQGLIDEQRNATG
                     IVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGRIHALWGADASVVASD
                     DGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARFRECAARALLMPGR
                     TPGHRTPLWQQRLRASQLLEIAQGYPDFPVILEILRECLQDVYDLPALERLMRRLNGG
                     EIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSELLRNLLGQVD
                     PGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRHTGSSEEV
                     ASYLENLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRVSYPLR
                     DLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEVFRR
                     LRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVMR
                     VIEQLAGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVAL
                     HLQEYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSA
                     LQEALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPISPLVS
                     YNTPNLAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTL
                     CRSMEDSGRIMRGRFVEGLGGAQFAERLTIDRWRDLATQATQTR"
     gene            complement(4186..4833)
                     /gene="rnt"
                     /locus_tag="OQQ75_001064"
     CDS             complement(4186..4833)
                     /gene="rnt"
                     /locus_tag="OQQ75_001064"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HCS1975466.1"
                     /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL
                     KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV
                     VRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLKRNPFHPFATFDTAALAGLALG
                     QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLPAAEEV"
     gene            complement(4936..5343)
                     /gene="gloA"
                     /locus_tag="OQQ75_001065"
     CDS             complement(4936..5343)
                     /gene="gloA"
                     /locus_tag="OQQ75_001065"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HCS1975467.1"
                     /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV
                     GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP
                     VKGGTTVIAFMEDPDGYKIELIEEKDAGRGLGN"
     gene            complement(5424..6521)
                     /gene="nemA"
                     /locus_tag="OQQ75_001066"
                     /pseudo
     CDS             complement(5424..6521)
                     /gene="nemA"
                     /locus_tag="OQQ75_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416167.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-ethylmaleimide reductase"
     gene            complement(6558..7157)
                     /gene="nemR"
                     /locus_tag="OQQ75_001067"
     CDS             complement(6558..7157)
                     /gene="nemR"
                     /locus_tag="OQQ75_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416166.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NemR"
                     /protein_id="HCS1975468.1"
                     /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS
                     FYHYFRSKEAFGVAMLERHYTAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGT
                     ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA
                     QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV"
     gene            7260..7499
                     /locus_tag="OQQ75_001068"
     CDS             7260..7499
                     /locus_tag="OQQ75_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HCS1975469.1"
                     /translation="MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSD
                     GEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF"
     gene            7548..8444
                     /locus_tag="OQQ75_001069"
     CDS             7548..8444
                     /locus_tag="OQQ75_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HCS1975470.1"
                     /translation="MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL
                     GVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITD
                     RDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF
                     TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF
                     NDDYFQLLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE
                     TLKMTRQQWFRIRKAALGYDVP"
     gene            8525..9046
                     /gene="sodC"
                     /locus_tag="OQQ75_001070"
     CDS             8525..9046
                     /gene="sodC"
                     /locus_tag="OQQ75_001070"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC2"
                     /protein_id="HCS1975471.1"
                     /translation="MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTIT
                     ETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHE
                     GPEGAGHLGDLPALVVNNDGKATDAVITPRLKSLDEIKDKALMVHVGGDNMSDQPKPL
                     GGGGERYACGVIK"
     gene            complement(9047..11058)
                     /locus_tag="OQQ75_001071"
                     /pseudo
     CDS             complement(9047..11058)
                     /locus_tag="OQQ75_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994342.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(11058..11915)
                     /locus_tag="OQQ75_001072"
     CDS             complement(11058..11915)
                     /locus_tag="OQQ75_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310380.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1975472.1"
                     /translation="MSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEK
                     VSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKAN
                     NEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
                     WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKT
                     LRGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSG
                     TTCSIAVGQ"
     gene            complement(11981..12154)
                     /locus_tag="OQQ75_001073"
     CDS             complement(11981..12154)
                     /locus_tag="OQQ75_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HCS1975473.1"
                     /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL
                     RGWIYAGDIWHPL"
     gene            12355..12789
                     /gene="slyA"
                     /locus_tag="OQQ75_001074"
     CDS             12355..12789
                     /gene="slyA"
                     /locus_tag="OQQ75_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416159.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SlyA"
                     /protein_id="HCS1975474.1"
                     /translation="MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLP
                     PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE
                     MEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG"
     gene            complement(12836..13303)
                     /gene="slyB"
                     /locus_tag="OQQ75_001075"
     CDS             complement(12836..13303)
                     /gene="slyB"
                     /locus_tag="OQQ75_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein SlyB"
                     /protein_id="HCS1975475.1"
                     /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT
                     IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV
                     QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR"
     gene            13577..14686
                     /gene="anmK"
                     /locus_tag="OQQ75_001076"
     CDS             13577..14686
                     /gene="anmK"
                     /locus_tag="OQQ75_001076"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HCS1975476.1"
                     /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL
                     KQAVLDICQGQQLTLSQFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVW
                     HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPT
                     ERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK
                     VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV
                     TISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAF
                     AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP"
     gene            14784..15113
                     /gene="mliC"
                     /locus_tag="OQQ75_001077"
     CDS             14784..15113
                     /gene="mliC"
                     /locus_tag="OQQ75_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-type lysozyme inhibitor"
                     /protein_id="HCS1975477.1"
                     /translation="MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTV
                     KLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC
                     QLQNPQR"
     gene            15172..15828
                     /gene="pdxH"
                     /locus_tag="OQQ75_001078"
     CDS             15172..15828
                     /gene="pdxH"
                     /locus_tag="OQQ75_001078"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HCS1975478.1"
                     /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE
                     AKLADPTAMVVATVDEHAQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL
                     FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
                     LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
                     "
     gene            15957..17231
                     /gene="tyrS"
                     /locus_tag="OQQ75_001079"
     CDS             15957..17231
                     /gene="tyrS"
                     /locus_tag="OQQ75_001079"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HCS1975479.1"
                     /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA
                     DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD
                     KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR
                     LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQN
                     QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT
                     FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA
                     LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS
                     DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK"
     gene            17290..18153
                     /gene="pdxY"
                     /locus_tag="OQQ75_001080"
     CDS             17290..18153
                     /gene="pdxY"
                     /locus_tag="OQQ75_001080"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase"
                     /protein_id="HCS1975480.1"
                     /translation="MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNH
                     TQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKA
                     ANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN
                     VEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQ
                     PVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIA
                     KPEHYFSATKL"
     gene            complement(18197..18802)
                     /gene="gstA"
                     /locus_tag="OQQ75_001081"
     CDS             complement(18197..18802)
                     /gene="gstA"
                     /locus_tag="OQQ75_001081"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HCS1975481.1"
                     /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF
                     AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA
                     TELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNETLKDEHWICGQRFTIADAYLFT
                     VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK"
     gene            complement(18908..20410)
                     /gene="dtpA"
                     /locus_tag="OQQ75_001082"
     CDS             complement(18908..20410)
                     /gene="dtpA"
                     /locus_tag="OQQ75_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpA"
                     /protein_id="HCS1975482.1"
                     /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM
                     AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY
                     ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN
                     IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINY
                     RNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI
                     VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP
                     ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ
                     SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP
                     LMSLEVYGRVFLQIGVATAIIAVLMLLTAPKLHRMTQDDAADKAAKAAVA"
     gene            complement(21021..21656)
                     /gene="nth"
                     /locus_tag="OQQ75_001083"
     CDS             complement(21021..21656)
                     /gene="nth"
                     /locus_tag="OQQ75_001083"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HCS1975483.1"
                     /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD
                     VSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG
                     EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE
                     EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI"
     gene            complement(21656..22351)
                     /gene="rsxE"
                     /locus_tag="OQQ75_001084"
     CDS             complement(21656..22351)
                     /gene="rsxE"
                     /locus_tag="OQQ75_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxE"
                     /protein_id="HCS1975484.1"
                     /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA
                     TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI
                     PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDG
                     ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRTEAA
                     AERALPNGETGNV"
     gene            complement(22355..22975)
                     /gene="rsxG"
                     /locus_tag="OQQ75_001085"
     CDS             complement(22355..22975)
                     /gene="rsxG"
                     /locus_tag="OQQ75_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HCS1975485.1"
                     /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKA
                     LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG
                     AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAV
                     KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE"
     gene            complement(22979..24037)
                     /gene="rsxD"
                     /locus_tag="OQQ75_001086"
     CDS             complement(22979..24037)
                     /gene="rsxD"
                     /locus_tag="OQQ75_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HCS1975486.1"
                     /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTL
                     VQILLASVSTLLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT
                     VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
                     VIFSGHTASGADMNTLHLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA
                     GWQWVNLAWLAGGLWLLWQKAIRWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLS
                     GATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT
                     VPLIDYYTRPRVYGHRKG"
     gene            complement(24038..26260)
                     /gene="rsxC"
                     /locus_tag="OQQ75_001087"
     CDS             complement(24038..26260)
                     /gene="rsxC"
                     /locus_tag="OQQ75_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HCS1975487.1"
                     /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFV
                     IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSA
                     LAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
                     GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKP
                     QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV
                     GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDARFCPSADQM
                     VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLL
                     PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE
                     KRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT
                     QPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARA
                     KARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAIE
                     AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDP
                     RKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
                     "
     gene            complement(26253..26831)
                     /gene="rsxB"
                     /locus_tag="OQQ75_001088"
     CDS             complement(26253..26831)
                     /gene="rsxB"
                     /locus_tag="OQQ75_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HCS1975488.1"
                     /translation="MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEIL
                     PQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE
                     LTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
                     CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA"
     gene            complement(26831..27412)
                     /gene="rsxA"
                     /locus_tag="OQQ75_001089"
     CDS             complement(26831..27412)
                     /gene="rsxA"
                     /locus_tag="OQQ75_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017456621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HCS1975489.1"
                     /translation="MTDYLLLFVGTILVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA
                     TTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL
                     LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFTAIRERLAV
                     ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL"
     gene            complement(27489..27929)
                     /locus_tag="OQQ75_001090"
     CDS             complement(27489..27929)
                     /locus_tag="OQQ75_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707526.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2569 domain-containing protein"
                     /protein_id="HCS1975490.1"
                     /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF
                     QTLGGQALTTQILWGVSFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV
                     KAFAFSPVEDGIAVRQLLFTLLATALIVSYFKRSSRVKATFVNP"
     gene            complement(28015..28230)
                     /gene="ydgT"
                     /locus_tag="OQQ75_001091"
     CDS             complement(28015..28230)
                     /gene="ydgT"
                     /locus_tag="OQQ75_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription modulator YdgT"
                     /protein_id="HCS1975491.1"
                     /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD
                     HRRAELVSGGRLFDLGQVPKSVWHYVQ"
     gene            complement(28503..28628)
                     /gene="blr"
                     /locus_tag="OQQ75_001092"
     CDS             complement(28503..28628)
                     /gene="blr"
                     /locus_tag="OQQ75_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division septum protein Blr"
                     /protein_id="HCS1975492.1"
                     /translation="MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK"
     gene            28841..29881
                     /locus_tag="OQQ75_001093"
     CDS             28841..29881
                     /locus_tag="OQQ75_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1975493.1"
                     /translation="MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVK
                     ADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS
                     QARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
                     DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY
                     PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD
                     GVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGI
                     ESAKHRATLCLA"
     gene            complement(29916..30917)
                     /gene="add"
                     /locus_tag="OQQ75_001094"
     CDS             complement(29916..30917)
                     /gene="add"
                     /locus_tag="OQQ75_001094"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HCS1975494.1"
                     /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI
                     PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG
                     YMAMAHKLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR
                     DQITALDLAGDELGFPGSLFLSHFNLARDAGWHITVHAGEAAGPESIWQAIRELGAER
                     IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRAGIN
                     TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK"
     gene            complement(31020..32192)
                     /gene="malY"
                     /locus_tag="OQQ75_001095"
     CDS             complement(31020..32192)
                     /gene="malY"
                     /locus_tag="OQQ75_001095"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional maltose regulon transcriptional
                     repressor/cystathionine beta-lyase MalY"
                     /protein_id="HCS1975495.1"
                     /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP
                     CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE
                     LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCNMGKLEAVLAK
                     PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS
                     NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA
                     HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID
                     DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR"
     gene            complement(32202..33794)
                     /gene="malX"
                     /locus_tag="OQQ75_001096"
     CDS             complement(32202..33794)
                     /gene="malX"
                     /locus_tag="OQQ75_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS maltose transporter subunit IICB"
                     /protein_id="HCS1975496.1"
                     /translation="MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSS
                     HDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGF
                     VGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM
                     LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINS
                     AGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQTQLSC
                     PTTHGFSESATRFLSQGKMPAFLGGLPAAALAMYHCARPENRHKIKGLLISGLIACVV
                     GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHG
                     LSTKWYMVPVVAAIWFVVYYAIFRFAITRFNLKTPGRDSEVASSIEKAVAAAPGKSGY
                     NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQV
                     VIGPQVQSVKDEMAGLMHTVQA"
     gene            33969..34997
                     /gene="malI"
                     /locus_tag="OQQ75_001097"
     CDS             33969..34997
                     /gene="malI"
                     /locus_tag="OQQ75_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mal regulon transcriptional regulator MalI"
                     /protein_id="HCS1975497.1"
                     /translation="MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAA
                     IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG
                     GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD
                     TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD
                     WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR
                     YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGTTLADRMMQKITHEETHSRNLII
                     PARLIAAK"
BASE COUNT         8785 a         9004 c         9124 g         8155 t
ORIGIN      
        1 ggcgcgtttg cgtggcttgt gtcgccagat cgcgccatcg gtcaatagtc agacgttcag
       61 cgaattgcgc gccacccaga ccttctacaa aacgacctcg cataattcgc ccggagtctt
      121 ccatacttcg acaaagcgtt tgcatcgatg gaaacccgcc agggatattt tcggctatca
      181 ccgcctgacg actgatgatg ccgtagcggt cgagcatatt ttccgccagc gccagcatcc
      241 tttcggtatc gtttagtggc tccacctgca ataacgacca gcgtccagcc agatttggtg
      301 tgttgtaaga taccagcggc gagatgggtt gcgcatagac aggacgtcca cgacgagccc
      361 ggtgactgcg gcgagttgag gtgcgtgcgt tggaactgct gcgggtgagg gcgcgtaacg
      421 gtgcccaaat gtcgctggtg atgacgcctt gccagaccag cgcccataac gcctcttgca
      481 gggcagagag atcaaccgat tcgccgattt tgtcgcgtat ccgttggctg atttgttgtg
      541 caaaccaggc tcctccgtca gccagaacag cgactatcgc ttgttgcagc gccgaacgat
      601 tcgcctgatc cgcttcggcg ggagtgaacg attctgcagc atattcctgt agatgcagtg
      661 ccaccaggcc gtcatcttca cccagttttt tttgccccga ccagataacc gcaccggttg
      721 ccagtaattc atcgagcatt tctgacgaat agtcgcgtac gcgggcaggc aggatctggc
      781 tttcccagag tgaggcgggt aaaccgactc cggcaagctg ttcgatcacc cgcatcacgc
      841 catctacgcc ctcataaacg cctggcgatg ttgaggcaaa gagcgccggg ctaccatcgg
      901 tggcgggtaa tacgccctga cgttccagca gcaatcgcgc ataggtcgtg gctgcaacgg
      961 gacgcgtcgc ttctctggcg gcttgcagcg agcgcaaacg cagacgacga aatacttcat
     1021 cgctcaccca gatgtcttgt tgcagattca tcaccagacc ctgttcacgc agttgctgaa
     1081 gctgctcttc gacaatggca ataccgagac taaactcatg agccagttgt tcagccgtga
     1141 ccagagcatg agcccggaga tagcgcagaa agaggtcgcg aagcgggtaa ctgactctat
     1201 gtaaataaat ctctggcaat gactctggta gtcgtacgcc gagggcatca cgcagcctgg
     1261 cggcatcatc catacaggca agacgctcct gtccgctaat catcgctggg aagattcgtt
     1321 ttactgcaag aagattttcc agatacgacg caacctcttc actgctgcct gtatgccgtt
     1381 gcgccaggtc ttcaacggtc attggcccca gttcgcgcag caggtcgaac aatccttctt
     1441 cacctttcgc tcttctgcca ggagccagtc gttgcaactc ttcttccacc tggcgaatga
     1501 cctgcgggtc gagtaattcc cccggatcga cctgtccgag tagattgcgc agtaactcgc
     1561 tgtccagcga cagtacggat gcccggcgct ctgccagcgg ggcgtcgctc tggtacataa
     1621 attccgcgac atagccgaac aataaacttg tggcgaaagg cgagggcgta gtggtcgtta
     1681 catcggatat ttgaatttcg ccaccgttca ggcgacgcat caaacgttcc agtgcgggaa
     1741 gatcataaac atcttgcaga cattcgcgta ggatttcgag aatgaccgga aaatctggat
     1801 atccctgagc gatttccagc aactgactgg cgcgcagccg ttgttgccaa agcggggtgc
     1861 gatggcccgg agtgcgcccc ggcattaata atgcccgcgc ggcgcattcg cgaaaacggg
     1921 cggcgaaaag tgccgagctg cctaccgcct cgcggacaat ttgcagcaac ttttctggtt
     1981 caaacaaaaa aatcgcggcg tcgggcaatt taccatcagt gtcaggaatg cgcgcaacaa
     2041 tgccgtcatc actggcgacc acagacgcgt cagcgcccca tagggcatgt attcgcccgg
     2101 caatcgccag cgcccagggt tcatgcaccc gtcttccata gggagagtgc aaaataatac
     2161 gccagtcgcc aatttcatca cggcaccgtt cgaggaccag atggcgactc cccggaacga
     2221 tgcccgtcgc gttgcgttgc tcgtcaatca acccctgaat attggcgttc gtattttctt
     2281 ctgccagcca cgggggaata gtcccggaaa agaacgcgcc atccgccagt aaatgaagaa
     2341 aatcgccgat catctcgcct aattcagccg gacgtccgtt accttcacca cgccagaagg
     2401 ggagccgggc agaacgaccc ggagcaggag tcacaatcac ctgatcgcgg gtgatttgct
     2461 ggatccgcca tgaggtagcg ccgagagtga taatgtcgtt cacccgcgac tcatatacca
     2521 tctcctcatc cagttcaccc acccgccgcg aaccggcctt ttcttcacct tcgggtaata
     2581 acacgctata catgccacga tccggaatgg tgccgccgct ggtaaccgcc aacaattgag
     2641 cgccaggtcg gacggtcaat atcccggtct ccctgttcca gaccagtttg gggcgaaaag
     2701 cagaaaaatc gccagaggga tagcgcccgg aaagcatatc cagcgtggcg tcaaaaacac
     2761 gtcttggcag atctttccac ggtgcggcac ggcgtacgcg ggagtaccat tcgtctacct
     2821 gtaatgcctc catcgccgcg gcggcaacgg tttgctgcgc aaggacgtcg agtggattat
     2881 gcggcggtgt caggttttcc agcctgcctg cgaacataca ctctacaatg actgcggaat
     2941 cgactaagtc acgccgggta cgagggaaaa acagcccttt agatacaccg ccaacctgat
     3001 gtccggcgcg accaatgcgt tgtaacccac tggcaacaga aagcggcgtt gccacctgaa
     3061 tcaccagatc cactgcgccc atatcaatcc ccagttcgag actggaggtt gcgaccacgc
     3121 agcgtaactc acccgatttc agcgcctgct cggtgattgc tcgttgttct ttagagacgg
     3181 agccgtggtg tgagcgggca ataaaaacgt cgctactttg tacacggtta gaggttgcgc
     3241 cggaggtcga ctcgaaatgg gccgcatcaa cggcgataga cggggaacgc tgtaagcgtg
     3301 cggcgtaaag ctcatttaat cgtgccgtca gtttttccgc cagcccacgt gaattagtaa
     3361 agacaatggt cgagcgatgg cgcaacactt catcaaggat acccgtttca atatatggcc
     3421 agatggagcc ttcccggccg gcatggctgt cttcgccggt gctgctggcg accgatgaga
     3481 catcatccat attggcgacc ggtacgacaa ttcgtatctg cggatggcgc attgcgggcg
     3541 ggttgactac cgtaaccggg cgatcgccac caagaaaggc tgccacatcg ctggctgagc
     3601 gcacagtggc agaaaggcca attcgctgtg ctgaggtgtg gagcagcgca tcgagccgct
     3661 ccagacttaa cgccagatgc gcaccacgtt tactgcccgc taccgcgtgg acttcatcaa
     3721 taattaccgt ttcgccgcgc cgccgccgtt catcggcaat acccttcaac gggagctgca
     3781 agttgcgctg aacgtcggtg cccagagctt ttatcggtga aatatagagg atgcgtgagg
     3841 ttttacgctt atgcgcctcg cgggtatctt cgccgccttc gcggaagagc cgatcgaggg
     3901 cgtagagaaa tgctgccagc gttttcccgg agccggtcgg tgcaatcacc agcgcatgtt
     3961 cgcttcgcgc cgccacatgc caggtttgcg actggacagc ggtcggctgt ttaaaggcgc
     4021 gaagaaacca gtcgcgggtc gccggtgaaa acacgtccgg caggagcgat gaagggtctg
     4081 gattatctgc cattaacgct attccccgtg aatatcatgc aggatgcgtg gaatagcctc
     4141 actatagatg cctgaatcat tgcatgtcat caggcatcga ctcgattaca cctcttcggc
     4201 ggcaggtagc ggccagcctc ccagacgttt ccagcggttg acgatttcac aaaacagcac
     4261 agcagtgcgt tcggtgtcgt acagcgcgga gtgcgcctgg gtgctgtcga agtccatgcc
     4321 agcggtctgg caagcctttg acaatacggt ttgtccgagt gccagcccgg ccagtgcagc
     4381 agtgtcaaaa gtggcgaaag ggtggaacgg gttacgtttc agtgaggcgc gttctgcggc
     4441 ggctatcata aagctgtgat caaaattggc attgtgcgcc accataatgg cgcggttaca
     4501 gccgctcgct ttaatacctt tacgtacaac tttaaaaatt tcgtgcagcg cctcgtattc
     4561 gctgaccgcg ccacgatcgg gatcgttcgg gtcaatgccg ttgaaggcga gggcttctgg
     4621 ttgcaaattt gcgccgacaa atggttcgac gtggaaatgt aatgtggtgt ccggcatcag
     4681 ccagccttgt tcatccattt tcagggtgat ggcggcaatc tcaagcagcg catcggtttt
     4741 ggcgttaaat ccggctgttt caacatcgat cacaacagga taaaaaccac gaaaacggtc
     4801 gcacagaccg gtaagttgag cgttatcgga catctgattc tcttaatacg gataaattgc
     4861 agcgcgcatt atgacaaata ttacttgtcg atgcagtaaa gatgcgggcg cgatgagttc
     4921 acgcccggca ggagattagt tgcccagacc gcgaccggcg tctttctctt cgattaactc
     4981 aattttgtaa ccgtccggat cttccataaa cgcgataacc gtagtaccgc cttttaccgg
     5041 acccgcttca cgggtcacgt tacccccgtt ttgacggatt ttttcgcacg cttcagcggc
     5101 gttatctacg ctaagcgcga tgtgaccata agcagtgccg agttcgtatt tatccacgcc
     5161 ccagttgtag gtcagttcaa tcaccgcttc ttcggtttcc gggccgtagc caacaaacgc
     5221 cagtgagtat ttgtattccg ggttttcgct ggtacgcagc agtttcatgc ccagcacttt
     5281 ggtataaaaa tcgatggagc gttgcaaatc gccaacgcgc agcatggtat gaagaagacg
     5341 catcttttta tcctcaaaat ggctaacaga ttcaaaatgt tgttttagta tagcggcggc
     5401 tttacgccgc tcgcaatgtt ggattacaac gtcgggtaat cggtatagcc ttccgcgccg
     5461 ccaccgtaga aactttcggc acgctgtggg ttaagctcag ctttgcgctg caagcgggcg
     5521 accagatccg ggttcgcaat ccagtcacga ccaaatgcca ccgcatcaat taaccctttg
     5581 ccgatcagcg tttcagcttt ttctactgtg tatgcacctg cgccgataat cggaccgtgg
     5641 aaacgggcgc gtactttttc gcggaacgca tcagtatacg gttcaccccc cgcccaatct
     5701 ggttctgaca tatgcagata agcaatgccg cgtttaccca gttgttcaat cagatacagt
     5761 gcatcggctt cttcattcgg gccgttatcc gtgttctgga aagtaccgat tggcgaaatg
     5821 cgaatgccaa tgcgatcggc accccattct tcaatcccgg catcgaccac ttccagtacc
     5881 agacgtgcgc gattttccac gctgccgccg tactgatcgg tacgatggtt tgaagaagga
     5941 gaaaggaact gatgcagcaa ataaccgtga gcagagagga gctctaccag atcaaaaccg
     6001 gcttcacgcg cgttagcaat ggcctgacgg aaatcattga cgatacctgg aatctcttct
     6061 agttcaagcg cacgcggcat ggatgtttca acacggatcg cctgaccatt ttcatcgcgc
     6121 agagaagtac gtgttcccgc gctaagtgct gaaggcgcta ccggtgcctg accgccaggt
     6181 tgcaggctgg cgtgagaaat gcgtccggtg tgccacagct acacggccat atgaccattt
     6241 tcagcatgaa cgccagcggt gatttttttc catgcggcaa tttgctccgg actatggatg
     6301 ccaggcgcac ctgcatatcc ttttacctgg gcagaaattt gcgtggcttc actaataatc
     6361 aaaccggcac tggcacgttg gcgatagtat tccgccatca acggggtagg aatgtcaccc
     6421 ggttcaatac tgcgcagacg cgtcagcggt gccataaaaa tacggtttgc cgccgtgatc
     6481 gcgcccactt tcagtgggga atacagtttt tcagatgaca taaaggctcc cggtcgtctg
     6541 gtgataaaaa atgcctgcta aacggcaggc gtcgcaataa tgttttttac atgggccagc
     6601 gcgttttcca gtggctcgaa actgcgcgaa attttggcct gcagattcgc acccagccat
     6661 agtgcgtaaa gcacttgtgc ctgttgtagc ggttcgccac aaaaggttaa acaatggttc
     6721 tcacggccat tttccagcgc ctgagagagc agggcgatca cgccgcgagc acctttatcc
     6781 atcgcgctgc gcatatcttc tgacagatcg cacacttcgg cagagagttt tactgtcagg
     6841 caaccactga tggttccatg ttggcaaaac tggttcagtg tttgctggta ataagccagt
     6901 atgcggtcgc ggtagttacc ttcgccggat tgcagcaact cagtcagtcg ctggtgatat
     6961 gcggtgtaat gacgctcaag catggcaacg ccaaacgctt ctttagagcg aaagtagtga
     7021 tagaaggacc ctttcggcac ttcagcggtt tttagtaatt cgcttagccc catcccggtg
     7081 aatccacgtt gcaggcaaag ttgctcgccc gtcgccagga gatgttcgcg agtatcatgt
     7141 tcggtgtgtt tgttcatgcg ttggagtgta gtagaccagt cggtctagtg caagcaaagt
     7201 tgctactttg gacattaaca gcttcaataa tggtaataat cttatctgag gagggcgaag
     7261 tggcggagca attagagttc tttcccgtcc agagcccgtg ccggggaatt tgccagtctg
     7321 acgaacgcgg gttttgtcgc ggctgttttc gtagtcggga tgagcgtttt aactggaata
     7381 aaatgagcga tggcgaaaaa caagaggtgc tgcgcctttg tcggcagcga ttaatgcgca
     7441 aattacgcgc aaataagcca gcgtcatcag acgaaccgga gcaaccatca ctcttttgaa
     7501 cctaatcttg cgtatactcc tctcatatct gataagagga agcgattatg gttcagcgta
     7561 ttactattgc gccgcaaggc ccggagtttt cccgttttgt gatgggctac tggcgattga
     7621 tggactggaa tatgtccgcc cgccagctgg tcagttttat tgaagagcat ctggatctcg
     7681 gcgtgaccac cgtggaccat gctgatattt atggtggcta tcagtgcgaa gcggcgtttg
     7741 gcgaggcact gaaactggca cctcacctgc gtgaacggat ggaaatcgtc agtaaatgcg
     7801 gtatcgcgac gaccgcgcgt gaagaaaacg tcattggtca ttacatcact gaccgcgatc
     7861 acatcattaa gagcgccgaa cagtcgctaa ttaatctcgc gaccgatcat ctggatctgc
     7921 tgttaatcca ccgaccagac ccgttaatgg atgccgatga agtggcggac gcgttcaaac
     7981 atctgcatca gagcggcaaa gtgcgtcatt ttggcgtatc gaactttacg cctgcgcaat
     8041 ttgccctgtt gcaatcacgt ctgccgttta cccttgccac taatcaggtg gaaatatccc
     8101 cggtgcatca gccgttactg ctggatggca cgctcgacca actacaacaa ctgcgtgttc
     8161 gtccgatggc gtggtcctgc cttggtggtg gtcgtctgtt taatgatgat tatttccagc
     8221 tgctgcgtga tgaactggct gtggtggcag aggagttaaa cgcgggctcg attgaacagg
     8281 tggtttacgc ctgggtatta cgtttaccat cgcagccgct gccaattatc ggttcaggta
     8341 aaattgagcg cgtacgggca gctgtcgaag cagaaacact gaaaatgacc cgtcaacaat
     8401 ggtttcgtat tcgtaaagcg gcactggggt acgacgtacc gtaagcactt ttaggaatag
     8461 ccgccgttca aaaatgtgtc actggtttac acttattcag gaatgcacaa tgaacggagg
     8521 tcctatgaaa cgttttagtc tggctattct ggcgctggtt gttgcaaccg gcgcacaagc
     8581 tgccagtgaa aaagtcgaga tgaacctcgt cacgtcgcaa ggggtagggc agtcaattgg
     8641 tagcgtcacc attactgaaa ccgataaagg tctggagttt tcgcccgatc tgaaagcatt
     8701 accccccggt gaacatggct tccatattca tgccaaagga agctgccagc cagccaccaa
     8761 agatggcaaa gccagcgccg cggaatccgc aggcgggcat cttgatccac aaaataccgg
     8821 taaacatgaa gggccagaag gtgccgggca tttaggcgat ctgcctgcac tggtcgtcaa
     8881 taatgacggc aaagctaccg atgccgtcat cacgcctcgt ctgaaatcac tggatgaaat
     8941 caaagacaaa gcgctgatgg tccacgttgg cggcgataat atgtccgatc aacctaaacc
     9001 gctgggcggt ggcggtgaac gctatgcctg tggtgtaatt aagtaattaa gaggcctgcg
     9061 taccttgcgg tggtgcttgc tcaagttgcg aaagcgagca gtacagccgc cagacaattg
     9121 ccgccagctc acgggcggca ggttgatgat gacgggcaag gctgtcgcaa atccgctgta
     9181 attcttcaag tgtggccgcc agtgattttt gctgaacgcc acgctcactc atcactcccc
     9241 gcaacagtga aatacagtta tcccgtactc gcgataacgg atcggaacgc gattcccagt
     9301 cgcgcaattg ccagacaaca tgagaacagt tcagcagcac tacactccag cgtaataacc
     9361 aacggcgagc cagcgcatcc tggctgttac tcaactgact gacgtgatga taagtgagcg
     9421 attcaaattc gctttcactc agtgttggat ggcggcttag ctgatcgaca aaatcccggc
     9481 gcagcgcgcg aatatggcgg cggcttttac gagcatccga tcctggacgc agaatggcga
     9541 acgctagcca agccagcgca acgccaacga tttttgccag attatcgtta agaaagtcag
     9601 caaaatcata caccggggga ttagtgacag cgataaacga acccataaaa acaatcagtt
     9661 gcccccacag tgcggcaaat ttgggcatct gcaatttaag aagctgcatt gtcgccagca
     9721 gtggaaagag aaacagtaaa aattgccaca gatcgctaat ctggaccatc aggccaaatt
     9781 tgaccacaaa gctgaatagc gaaagtaaca ccagcgtgcg catcagcagt gacaacgact
     9841 taaacggtgc tgcgacggcg gagtagagta cgcagctaat tgctgccagc gttaatgcat
     9901 tggcaccggc atcctattgc gatgcaatac tccatgcgcc aatcatcatc aacgtacaaa
     9961 atgtacgcag cccgctccac ataacttcgg cgttgtcggt atgacgagcc agagcggatg
    10021 tccgtgcgag tctggcatga tcatctacac cgctttgcag acgatgtaat tcctgactac
    10081 tttgcagata aaggcggcaa aaataacgta gtcgctgcca gaaggcgacg tgccggtagt
    10141 cggcgacgtt ggtcgggcgt agcggggcga taatacgtgc gacggtgtaa gcatctgttt
    10201 gcgaactggc gagcgccgtc agcaattgtt cgagaatttc tcgcgtggca cctggcggtg
    10261 agggccagtt gagcaacata cgtcgcaggc tggagatgac actggtcata cgtaattgct
    10321 ggtggagtag cgcattaagg cgcgcgtttt gctggcgaaa acgatagtgg ctccagaaag
    10381 cctggatacg cagcaaattc atggtcagta tctgcccaat ccccccctca tgtgctgcac
    10441 gaatggcatc gtttgtttca ggctgccaga gtaaactggc atgttccagt aatcgggcgt
    10501 gcatgttttt caatgcggtt aaaagggctg tagcatcgga actgctaggc aggatcatca
    10561 tcatcatgcc gccgcacaaa ataccgacta tcacctcgca aacgcgcgcc tgagcgatat
    10621 cctacagctg gctggcctca gtaatattaa ccatcggaaa ggcgatgatg gcagccgtgt
    10681 agccgccagt tgaaatgcat acgcgacgtt attcgtgaag tgcgcacagg cccaggtaca
    10741 aaagccaagc cacgccgaca tgctcaatag aaaaaaccac ggctcattga gcgtatgccc
    10801 ggcaagaagc agtgccgcaa tggctcccag taaactgcca gcgatgcgtc cgaggctttt
    10861 gctgatgaca ccgccaacgg tgggaaagct aaccactgca gccgaggtca tcgcccaata
    10921 gggttcatcc agattcaaat aataggcaac cgtcagcgcc agacacatgg caatggtatt
    10981 gcgtaacgca taacgccatt gcgccagcgt ggccttgaac cagggcaaat tgcgcaagga
    11041 ccatgacgat gcgttcatta ttgacctacg gcaatgctac aggtggtgcc cgacaccagc
    11101 gtgacatcgc ctggaacttt atccagcgca aagcggacgg gaacgcgttg ggcgagacga
    11161 acccagggga cgttaggttt cacatccgga ataaggcttg agtcactttc aacgctttga
    11221 tcataaatcg cccgaccgat actggaaacg tgaccccgta acgttttgtt atcactatag
    11281 agggtaattt gtgctggtgc accttcgcgg atatggcgca acttggtttc ttcaaaataa
    11341 ccaatgacgt aaaacgagtg gctgtcgaca agggcaaaca gcggtttccc ggtgtcagcg
    11401 taatcgccga tgcgggtagt gaggttagtc acccaaccac tcaccggggc gcgaatttcc
    11461 gtttgcgcca gttgccattg tgtctgtttc agcgtggcct gtgcggcatt aacactggcc
    11521 tgcatcgctt taacattgag gttagcggta tcgagttctt cggcagaaat aaaattttgt
    11581 gagagatgac gacgacgatt cgcttcgtta ttggcttttg cgaggtcaga ttgcgctttc
    11641 gccagctgag cctgtgcgtt cagctcggcg atctgaaagg gcgttttatc gatcgtgagc
    11701 agaagatccc ccgcgttaac cagttggttg tcttttatat tcagctcaac aatacgtccc
    11761 gacacctgtg gggtgataga aaccttttct gcgcgtattt tcccgtcgcg tgtccacgga
    11821 gattgcatgt aataattcca cagccaccat ccggcaagaa ccgcaactat cgctacaatg
    11881 attattgaga aatacttaat tgttttaatt gacatagtta ccacgcaatc agtattgcca
    11941 gagcaaggca aacgcaaatc gcaaacagcg ataaatccat ttacaaggga tgccagatgt
    12001 caccggcgta gatccagcca cgaagcaggc ggtgtacgac aagccagatg acgaatccaa
    12061 acgcgaaggc tttgaaaaac ggaggaaaat agacggacgc accgaacacc agatcttgta
    12121 agggcaatcc tgttgcattg agcataaact tcacaaagta gattccttta cgaccgaata
    12181 tattgcgtta gattaataaa tattctttaa gtgcgaaaaa tttacgcgca atttctgaaa
    12241 aatatgtctg acggtaacca aatgcagcaa tacatttgtt ttagcaataa aattgctgca
    12301 cactattcta aaagccgcat aatatcttag caagctaatt ataaggagat gaaattggaa
    12361 tcgccactag gttctgatct ggcacggttg gtgcgcatat ggcgtgctct gatagaccat
    12421 cgcctgaaac cgctggagtt aacacaaacc cattgggtta cgttacacaa tatccatcag
    12481 ttacctccag accagtcgca aattcaactg gcaaaagcga ttggcatcga gcagccatca
    12541 ctggtccgta ctctggacca actggaagaa aaagggttaa tttcgcgtca aacttgtgcc
    12601 agcgatcgtc gggctaaacg tattaaactg acggaaaagg cagagccact gatcagcgaa
    12661 atggaagctg ttattaacaa aacccgcgcg gaaatattac atggcatctc cgcagaggaa
    12721 ctggagcaac tgattacgct catcgcaaaa cttgagcata atatcattga gttacaggcc
    12781 aaagggtgaa atgaaggggg cgtgtggtca gtaacctgac cacacgcaaa cttatttagc
    12841 gcggagaaac ggtcacctga ctgccattgc tggccagtac gacacgttgg cccggagaga
    12901 aacgagtgtt gccttgtttc tgtaccacca tgatggtatt accatcgtct ttacgaattt
    12961 ccagctcgac accctgcgtt ttgttcattg cactctgtac gccctgacca gctacgccac
    13021 ctgcaacagc gcctgctgca gtagccagag aacgcccggt tccgccacca acagtattcc
    13081 ccaggaaacc accaagaaca gcaccgccaa ttgcaccgat aacgttggaa tcatcaccgc
    13141 cctgaatctg taccggacgt acgttaacga tggtgccata gctgacattc tgtacttgtt
    13201 tcgcttcaga agcggtataa acatcccctg acagggtgtc gttattaaca caaccgacaa
    13261 gagacagacc taccattgaa acaaccaata cgcgtttaat cattgaaaaa tctcctgttc
    13321 accatgaaac gccacgcaag catccctcat ggtcaaagta tatggcatat gtgaatccat
    13381 ggttacatgt tctaccaaat atgagcaaat cataatgaaa gtaggagcaa ccaattataa
    13441 acaaaacatt catgatgatt attgatttga agataatgtt ttactaccaa cggtaaaaat
    13501 cggtcattcc gcatggtatt cacgaaaagt ttatgtttga gtggtgcgca aacgtcagat
    13561 tgaaaaagga tgaactatga aatcgggccg ctttattggc gttatgtcag gcaccagcct
    13621 tgatggtgtt gatgttgtgt tggcgacaat agatgaacac cgggtcgcac agctggcaag
    13681 cttgagctgg ccgatcccgg tgtctctgaa acaggctgta ctggatattt gccagggcca
    13741 gcagcttaca ctttcgcagt ttggacagct tgatactcaa ctcgggcgac tttttgctga
    13801 tgcggtcaat gccttgctta aggaacaaaa cctgcaggcg agagatatag ttgcgatcgg
    13861 ctgtcacggt caaaccgtct ggcatgaacc gacgggcgtg gcaccacaca ctttacagat
    13921 tggcgataac aatcaaattg tggcacgcac cggaattacg gttgtcggtg attttcgccg
    13981 tcgcgatatt gccttgggag gacaaggcgc accgctggta cctgcgttcc atcatgcctt
    14041 gctggctcac ccaaccgagc gacgaatggt gctcaatatt ggcggcatcg ccaatctgtc
    14101 actgctcatt cctgggcagc cggttggcgg ctacgatacc ggtcctggta acatgctgat
    14161 ggatgcctgg atctggcgtc aggccggtaa accttacgat aaagatgccg agtgggcacg
    14221 ggcgggtaaa gttattctcc cactgctgca aaatatgctc agcgacccat atttctcgca
    14281 acctgcaccg aaaagcaccg gacgcgaata ctttaactac ggctggctgg agcgccattt
    14341 acgccatttt ccgggtgttg atccccgtga tgttcaggcc acactggcag aactcaccgc
    14401 cgtgaccatt tctgaacaag ttttgttgag cggtggctgc gaacgattga tggtatgtgg
    14461 tggaggtagt cgtaatccgc tactcatggc gcgtctggcg gcattactgc caggcacaga
    14521 agtcaccacc accgatgccg ttggcattag tggcgatgac atggaagcat tggctttcgc
    14581 ctggcttgcc tggcggacgc tggcgggatt accaggaaat ctgccttccg tcactggcgc
    14641 aagccaggag acggtactgg gggctatttt ccctgctaac ccgtgatatc agagttaact
    14701 gaatttttct taccgcgtct gccgttacac ttggaacgtt agggagggcg tattgccctc
    14761 cagaccagga aagtcttcgg gaaatgtcta tgaaaaaact gttactgatc tgtttgccgg
    14821 tgcttctcac cggctgtagc gcgttcaatc aactggttga gcacatgcaa accgctacgc
    14881 tggaatacca gtgtgatgaa aaaccgttga cggtcaaact gaataatccg cgccaggaag
    14941 tcagttttgt ttacgataat caactactgc atctcaaaca gggcatttca gcgtctggtg
    15001 cacgttacac tgacggaatc tatgttttct ggtcgaaagg cgatgaagcg actgtctata
    15061 aacgcgaccg catcgtattg aataactgtc agttacaaaa tccacagcgt tgagattttt
    15121 ccaggggcgg cgcacaatag cgtcacccac tgacaatccg taaagaaaac catgtctgat
    15181 aacgacgaat tgcagcaaat cgcgcatctg cgccgtgaat acaccaaagg cgggttacgc
    15241 cgtcgcgatc ttcccgccga tccattaacc ctttttgaac gttggctctc tcaggcgtgt
    15301 gaagccaaac tggcagaccc taccgcgatg gtggtcgcta ccgtggatga acatgctcag
    15361 ccttatcaac gcatcgtttt actcaaacat tacgacgaaa aaggcatggt gttttacacc
    15421 aacctcggta gccgtaaagc acatcaaatt gaaaataatc cgcgcgttag cctgctgttc
    15481 ccgtggcata cccttgaacg ccaggtgatg gtgatcggta aagcagaacg actttcgact
    15541 ctcgaagtga tgaaatattt tcatagccgc ccgcgtgata gccagattgg tgcatgggtt
    15601 tcgaagcagt ccagtcgcat ttctgcccgc ggtatccttg aaagtaaatt cctggagctg
    15661 aagcagaagt ttcaacaggg cgaagtgcca ttgccgagct tttggggcgg ttttcgcgtc
    15721 agccttgaac agattgagtt ctggcagggt ggtgagcatc gcctgcatga ccgctttttg
    15781 taccagcgag aaaatgatgc gtggaagatt gatcgtcttg caccctgaaa agatgcaaaa
    15841 atcttgcttt aatcgctggt actcctgatt ctggcacttt attctatgtc tctttcgcat
    15901 ctggcgaaaa gtcgtgtacc ggcaaaggtg cagtcgttat atacatggag attttgatgg
    15961 caagcagtaa cttgattaaa caattgcaag agcgggggct ggtagcccag gtgacggacg
    16021 aggaagcgtt agcagagcga ctggcgcaag gcccgatcgc gctctattgc ggcttcgatc
    16081 ctaccgctga cagcttgcat ttggggcatc ttgttccatt gttatgcctg aaacgcttcc
    16141 aacaggcggg ccacaagccg gttgcgctgg taggcggcgc gacgggtctg attggcgacc
    16201 cgagcttcaa agctgccgag cgtaagctga acaccgaaga aactgttcag gagtgggtgg
    16261 acaaaatccg taagcaggtt gccccgttcc tcgatttcga ctgtggagaa aactctgcta
    16321 tcgcggcgaa caactatgac tggttcggca atatgaatgt gctgaccttc ctgcgcgata
    16381 ttggcaaaca cttctccgtt aaccagatga tcaacaaaga agcggttaag cagcgtctca
    16441 accgtgaaga tcaggggatt tcgttcactg agttttccta caacctgttg cagggttatg
    16501 acttcgcctg tctgaacaaa cagtacggtg tggtgctgca aattggtggt tctgaccagt
    16561 ggggtaacat cacttctggt atcgacctga cccgtcgtct gcatcagaat caggtgtttg
    16621 gcctgaccgt tccgctgatc actaaagcag atggcaccaa atttggtaaa actgaaggcg
    16681 gcgcagtctg gttggatccg aagaaaacca gcccgtacaa attctaccag ttctggatca
    16741 acactgcgga tgccgacgtt taccgcttcc tgaagttctt cacctttatg agcattgaag
    16801 agatcaacgc cctggaagaa gaagataaaa acagcggtaa agcaccgcgc gcccagtatg
    16861 tactggcgga gcaggtgact cgtctggttc acggtgaaga aggtttacag gcggcaaaac
    16921 gtattaccga atgcctgttc agcggttctt tgagtgcgct gagtgaagcg gacttcgaac
    16981 agctggcgca ggacggcgta ccgatggttg agatggaaaa gggcgcagac ctgatgcagg
    17041 cgctggtcga ttctgaactg caaccttccc gtggtcaggc gcgtaaaact atcgcctcca
    17101 atgccatcac cattaacggt gaaaaacagt ccgatcctga atacttcttt aaagaagaag
    17161 atcgtctgtt tggtcgtttt accttactgc gtcgcggcaa aaagaattac tgtctgattt
    17221 gctggaaata atgcattaag tggaaagggg gagtgagaaa tcactccccc tggtttttat
    17281 acagggaaca tgatgaaaaa tattctcgct atccagtctc acgttgttta tggtcatgcg
    17341 ggtaacagtg cggcagagtt tcctatgcgc cgcctgggcg cgaacgtctg gccgctgaac
    17401 accgttcaat tttctaatca cacccagtac ggcaaatgga ctggctgcgt gatgccgccc
    17461 agccatttaa ccgaaattgt gcaaggcatt gccgccattg ataaattaca cacctgtgat
    17521 gccgtgttaa gtggctatct gggatcggcg gagcagggtg aacatatcct cggtatcgtc
    17581 cgtcaggtga aagccgcgaa tccgcaggcg aaatattttt gcgatccggt aatgggtcat
    17641 ccggaaaaag gctgtatcgt tgcaccgggt gtcgcagagt ttcatgtgcg gcacggtttg
    17701 cctgccagcg atatcattgc gccgaatctg gttgagctgg aaatactctg tgagcatgcg
    17761 gtaaataacg tcgaagaagc ggttctggca gcgcgcgaac tcattgcgca agggccacaa
    17821 attgtgttgg ttaaacactt ggcgcgagct ggctacagcc gtgaccgttt tgaaatgctg
    17881 ctggtcaccg ccgatgaagc ctggcatatc agccgtccgc tggtggattt tggtatgcgc
    17941 cagccggtag gtgttggtga tgtgacgagc ggtttactgc tggtgaaact gcttcagggg
    18001 gcaacgctgc aggaggcgct ggaacatgtg accgctgcag tctacgaaat catggtgacc
    18061 accaaagcaa tgcaggaata tgagctgcaa gtggtggctg ctcaggatcg tattgccaaa
    18121 ccagaacatt acttcagcgc aacaaagctc tgaaatatct catttcggcc cacaacgacc
    18181 tgtgggccga tggctattac tttaagcctt ccgctgacag tgcgtcttgt acttccggac
    18241 gttcagccat acgttgcata aatgctgcaa tgtgctctaa cccttccaga ttcagtttca
    18301 ccgcgtatgc ccagcgcaga accgtaaaca gataggcatc agcaattgta aatctttgcc
    18361 cgcagatcca gtgctcatcc ttcagtgtct cgttcacata ttgcagcttc ttctccagct
    18421 gcgcgcgaac tgtcggtttg tactcttccg gtgtatcagg gcgaaacaga ggtgtgaaac
    18481 ctttatgcag ctcggtggcg atgtaattca gccattcgat ggttttatag cgggaaatac
    18541 tgtttaccgg tgccagcaac tggcggtcgg ggacgctgtc ggcaagatac tgcataatcg
    18601 ctacgccttc cgtcagcaaa gtaccgtcat ccagcagcaa tgcaggcacc tgccccttag
    18661 ggttaacggc aaagtaatcg tcaccgtttt cgagacgttt tttcattaaa tccacactga
    18721 cgagggtaaa atcctttccg ctctcacgca gggtgatatg ggaagcgaga gagcaggcac
    18781 ccggtttgta gaacaatttc atcggtaact ccttttgtct gtggtttaaa gtatggtagt
    18841 gcgttgctga acaaaaaaaa agccgctaac gaaaagttag cggcttgtaa aagagtttcc
    18901 ctaaatttta cgctacagca gctttcgccg ctttgtctgc agcgtcatcc tgcgtcatac
    18961 ggtgcagttt aggcgcggtc agcagcatca gtactgcaat aatggcagta gcgacaccaa
    19021 tctgcaagaa tacgcgacca taaacttcca gtgacatcag cgggtcggta acgttatccg
    19081 gcacagccat catacccgca acataaccac caatcaggtt tgcaccggca gtggtcagga
    19141 accagctacc cataatgaag cccatcagac gctgcggaac gagttgtgca accattgcca
    19201 gacccagacc agagatcatc agttccccga tgctctgcag gccatagctt gcgaccagcc
    19261 agcttacaga cacgatacca gcgtcagacg cgaatttcgc acccagcggc agaatcagga
    19321 acgcaccaga acacatcacc atgccgattg caaacttggt tggcatcggc agggtatcgc
    19381 ccatcttgtt atagatagcg gccagaatcg gactaccgat gatgatccag aacgggttca
    19441 gtgcctgata ctgctcaggt tctacggcca gacccagaat ggagtgctca acgttacgaa
    19501 tcgcaaagaa gttcagtgac gttggcatct ggctgtacag cacgaagaag ataatggctt
    19561 cgagcatcag gatgaaggca acgatcattt tacgacgcgc agcacctttc atcgcgaagg
    19621 cttctttacc gaagataacc acgataccga aggcaacaac gcccagcgcc atacgcgcaa
    19681 cttcctgatt gtgcagcagc caggtggcga tagcgatcag tgccacaaca ccaataatgg
    19741 tcagtagcag gttacggtag ttgataggct cgaagtctgg ttttgaaccg tactgtttaa
    19801 cccagcgttg gcagaaggcg aagttaacga tagtgatcag caggcctaca acgctcaacg
    19861 caaacgcaac actccagccg tatttcgcgg ccagccacgg cgtagcaatc atagagaaga
    19921 aagagccgat gttgacggac atgtagtaca tggtgaatgc accgtccaga cgcgggtcgt
    19981 ttttctcata gcatgtagaa agcagagaag acgggttagc tttaaacagg ccgttaccga
    20041 ccgcaatagc cgccataccc atataaacga taccggcgtc gtgaccagac caggcaacca
    20101 gagcataacc aatcgccagc acaatagcgc cgagcataat tacgcgttta gtacccagta
    20161 ccttgtcacc taaccagccg ccgatagcga ccagaccata aaccagggca ctaaaggaag
    20221 agaaaagggt gattgaatcc gcttcagaca tacccagttg tttaaccagg taaacagcca
    20281 taattccttg taggccgtaa taaccaaaac gttcccataa ctcaatcgag aagatgagat
    20341 agaacgcctt cggttgtttg aaagcgttca aactgacgct ttcagttggt ttttggtttg
    20401 cagtggacac ttttacctct ttttttacat cccatattaa cgggggtgct ttctcgcgtt
    20461 atgtctaaaa aacatacgcg caattgttat agtgggaggg gaaacggcag gtaatgttca
    20521 ctatcttgca ctttcagaca agtcctttgt aataatctgt tacatataac tgaggcgggg
    20581 aattcaacca ttccgggaaa tgttatccag cgttaaattt ttcaaaaaac gtaacggcag
    20641 attttttcac tgcactgaga gggggatgat ggcttaacgg cgatatgttc tgctatttag
    20701 cgtttttact agtgagatag tccagtttct gaaaaatagc cagtgtaatg ttttgtaggt
    20761 caatatttgt tgcgtgtgta aatttaaatg attttaacct gattcttgca atgtttttac
    20821 attgcgacag catcgtgatc ttgatcacga atgaatagaa aatttcgcta ttaaaaaaac
    20881 aattaacctg catttttggt tatccgcaaa cggattacct gatgataacg ctaagcaatg
    20941 gcatcattca cgttaaaaag atgttttaaa agaggataaa gaaaggttat caatggggta
    21001 atcggtgtta ccccttttct tcagatgtca actttctctt tgtattcaca aagatcttca
    21061 ataatacaag agccacagcg gggcttgcgg gcaatgcagg tataacgccc gtgcaggatc
    21121 aaccaatggt ggcagtcgac tttaaactct gccggaacca ctttcagtag cttttcttct
    21181 acctgttcaa cgtttttccc cggcgcaaat tgagtacgat tacaaacgcg gaaaatgtgc
    21241 gtgtcgacag caatagtcgg ccagccgaat gcagtgttta atacgacgtt ggctgtttta
    21301 cgacctacgc cgggcagggc ttcaagcgca gcacgatctt ccggaacctc gccattatgc
    21361 tgctccagta agatacggca ggttttgatg atattttctg ctttgctgtt ataaagccca
    21421 atcgttttga tataggtttt aaccccttca acgcccagtt caagcatcgc tgcaggcgta
    21481 ttcgccaccg ggtagagttt cgccgtcgcc ttattaacac tgacatcggt cgcctgagcg
    21541 gaaagcagta cggcaatcag caattcaaaa ggcgaactga aattaagctc ggtggtggga
    21601 tgaggattgt tctcacgcag gcgagtgagg atctccaggc gttttgcttt gttcatcaga
    21661 cattccctgt ttcaccgttt ggcaatgcac gttcggcagc tgcttcagta cggcgctttt
    21721 tcattctttc atcaatcagg tattttcctg ccagcatcag tcccaggcca ataaatgcac
    21781 ctggtggcag catcgccagc aggaaagggg agtcggtgtg gaaaatctcc acgcgtaata
    21841 cttttgccca gctacctaac agcgcatctg caccgtcaaa caatgtgcca ttgccgataa
    21901 tttcgcgtag tgaacccagc acgaacatgg cgcaggttgc gcccatacca attgaaaagc
    21961 cgtccagtgc cgaaagcgcc ggaccttttt tggcggcgaa ggcttcagcg cggcccacaa
    22021 cgatacagtt agtgacaatc agcggaataa aaatccctaa tgattgatac aggccaaagg
    22081 cgtaggcgtt gatcagcatc tgtacagcgc tgaccaccga ggcgatgatc atcacgtaaa
    22141 tgggaatgcg gatctcggct ggcgtccagt gacgcagcgt cgaaatggtc aggttggtca
    22201 gcgtcagtac cagcgtagtc gcaagtccta aacccagagc attagtggca gtggacgtga
    22261 ccgccaacag aggacaaagg ccgagcaact ggaccagcgc agagttgttt ttccacaacc
    22321 cctgaacaat aacgtcttta atttcgctca cgctttattc tccacaggca ggaagttgag
    22381 aaagttgtgc cggtaacgtc tgagcgtaca atccggcgcg ttttaccgca ttaaccaccg
    22441 cgcggggagt aatcgtcgcg ccggtgaact ggtcgaaatc accaccatct ttcttcaccg
    22501 cccagtgcgc atcatccgca ccactgattt ttttacccgc aaaatgggtg atccagtcag
    22561 aaaggcgcag ttcgatttta tcgccaagcc ctggcgtttc gtggtgctct gtcacgcgcg
    22621 tgccaagtac cgtgccgtta aaatcggctc ccaccagcag ctgaatcgca ccggaatagc
    22681 catctggcgc ggttgcttcc agaacggcgg ctaccggttt gtcatcctgt ttggcgatgt
    22741 aaacccgatg ctcaccttta cctaactctg gcgcagttac cagatagcaa ctctgtgcca
    22801 gcgcattgtt atagcgttcg gctggcagca cctgatcaaa taatgccttt tgttgcagac
    22861 ttgcctgttc agcaatcgtc gttttggtca tctggttgat ggccgcagtt aaccctgttg
    22921 aacccgctgc aaatagcgct aacgtaatgc cgtgttttcg gatagttttc agcatggttt
    22981 accctttgcg atggccgtag acgcgcggac gcgtgtagta atcgatcaga ggaaccgtga
    23041 tgttcgccag caggacggca aaagccacgc cgtcaggata gccgccgaaa ctgcggatca
    23101 accagactaa taagcccgca agcgcgccga aaataagacg accacgattg gtcgtagaag
    23161 cggtaaccgg gtcagtcaaa ataaagaatg cgccgagcat ggtcgcacca gacagcagat
    23221 gaatttgcgg tgctgccagt gtttctggtg agaacaacca gcccaacgtt gcgcataacg
    23281 ccagcgttac taagaagctg aggggaatat gccagcgaat cgctttctgc catagcaacc
    23341 acaggccgcc agccagccag gcgagattta cccattgcca accagcgccc gccagaatac
    23401 cgctgtagat cggatattgc ataatctgtt caaccgaatg accggcacgg acagaggttt
    23461 taaatgtatc cagcggtgtc gcctgactaa tgccatcaat acctaagtgt agtgtgttca
    23521 tatcagcacc actggcggta tgcccgctga aaataacctg tatggcgtcg ataaaaccag
    23581 ggatgttgac cgcaatttca tgtggcggta accagctggt catctgcacc gggaaggaga
    23641 tcagtaagac cacataacca atcattgccg gattaaacgg gttttgcccc agaccgccat
    23701 acaactgttt agcgatgatc accgcaaaca ccgtacccag cacgaccatc caccatggcg
    23761 cgaggggggg aatacttacc gccagcaata agcctgtcag caatgctgag ttatctttca
    23821 acgttgcggc taccgactgc ttgcgtagtt tgagtacgag agcttcggct aacagagtac
    23881 taaccgatgc caacaggatc tgaacgagag taccccaacc aaaaaaccac agttgcgctg
    23941 cgattcctgg cacggctgcg agcaacacca acagcataat gcgcgatgtc tggcgctggt
    24001 tatgggtata aggggagcta gctattctga ataccattta gtcctcgttt acaacctttt
    24061 gctgggcggc ttttttggcc tgagcgcggg caatagccgc ggcaactgcc gctttgcgcg
    24121 gatcaacctg ttcttctggt tctgcgttag tctgttgctg ttccagcttg cgcgctttgg
    24181 cacgggcaat agcggcttcg acggcggctt tgcgcggatc aacctgttct tcaggtaccg
    24241 cattagcctg ttgctgttcc agcttgcgtg ctttggcgcg tgcaatagcc gcttcgacgg
    24301 cagctttgcg cggatcaacc tgttcttctg gctccgcatt agcctgttgc tgttccagtt
    24361 tgcgcgcttt ggctcgggca atagcggctt cgatggcggc tttgcgcgga tcaacctgtt
    24421 cttctggttc cgcattagcc tgttgctgtt ccagcttgcg cgctttggca cgggcaatag
    24481 cggcttcgac ggcggctttg cgcggatcga cctgttcttc tggttccgca ttagcctgtt
    24541 gctgttccag cttgcgcgct ttggcgcggg cgatagctgc ttcaacggca gttttacgtg
    24601 gatcagcaac ggttgctgcg tcgttagttt gctgcagttc tgcctgtttc gctctggctt
    24661 gcgctttacg ggcttcccgt gctgcaataa ttgcactgtt atccgggcgt tcgcccgctt
    24721 taatcacaat aggctgtgta gcctgggcct gtttctcttt cacccgcgcc agagcggcag
    24781 caatcgcatc tttatctttg gctgcaggtt gaacggctgc gctcttatgt cgttcaaggc
    24841 gagccgcttt ttcgcgctcc agacgagcct ggcgcgcttc gaaacgcgct ttggcttctg
    24901 cggcgcgctt ttcttcctga cgaatagccg caatttcagc tttttcctga cggaaatatt
    24961 gcaccagggg aatattgctc gggcaaaccc acgcgcaagc cccacattca atgcaatcag
    25021 caatgttatg cgtggtagct ttatcgtgtt gctgaccttt gctgaaccag tacaactgtt
    25081 gcggcaaaag atccgcaggg caggcgtcag cacaggcgct acaccggatg cagctttgtt
    25141 cttcctgtgg ttcgccaagt tcattggcag agggagccaa cagacagttg gtaatcttta
    25201 cgaccgggac atccagccat ggcaaggtaa agcccattag cgggccaccc ataatcacca
    25261 tttgatcggc agaggggcag aatcgggcat cattcaataa atgacgcact ggcgtcccca
    25321 gccgtgccca gacgttgccc gggcgagcga ttgcttcgcc agtcagggtt acaacacgct
    25381 cggtaatcgg ctcgccatca ataacggcac gtttcactgc ataagcagtg ccgacgtttt
    25441 gcattaatac gccgatatcg gatgaacgcc cgccatgtgg aacctgcttc ccggtcagaa
    25501 tgtaggttaa ttgtttagca ccgccagaag gatatttggt tggaatcacc cgcagagaaa
    25561 tatcgttaga gtccgccagc accgcgcgca gcatggaaat cgcctgcggt ttgttatctt
    25621 caatgccgat aagaatttcg cgtggctgca gaatatgcgc aagaatgcga ataccctcta
    25681 cgacctgagc cgcgcaatcc tgcatcaaac ggtcatcggc ggtaatgtac ggctcgcact
    25741 cagccgcgtt gataatcaac gtttcaatct tatctccgcc accctgcaat ttaacgcctg
    25801 tcgggaatcc tgcaccgccc agcccggcaa caccaaactg atgtatgcgc tcgattaact
    25861 cttcgcgact acgagtgcga taatcggccc agccgtcgcg cgggatccag cagtcttcac
    25921 catcggcatc aataatcacg cttaattcag ctaaagctga aggatgagcc gtagagtggg
    25981 gcgcaatagc cgtaacggta cccgaggtgg gcgcgtgaac aggcagcatt ttgccgcgac
    26041 cacgggtaag cggctggccg cgcaatactt tatcgccgac gctaacgcac aactcacctt
    26101 cagcgccaat atgctgtttc agtggaataa caaaacgctg cgccagtggt acctggcgca
    26161 ggggggtacc gttggactgg gttttcatct ccggtggatg gatgccgccg ttgaaatccc
    26221 agattttatt ttttctgaat gcagagaata acttaagcat ggtgttccac gggaatgata
    26281 cgcacgggaa tggtgttcag atcccatttc caggagtcag gtgtttctgc gaccggttgc
    26341 aacgagatgc agtgcgtcgg gcacggatca acacataaat tgcagcccgt acagagatca
    26401 ctcattaccg tatgcatggc acgggtagcg ccaacgatgg cgtctaccgg acaagcctga
    26461 atacatttag tgcagccaat acagttattt tcatcaataa ccgccaccat ccgcgcaggc
    26521 gttagctctt gcgcttcgcc atccagcggc tgcggctcga cattaagcaa ctcggcaatt
    26581 tttagcatca cagcttcgcc acctggggcg caacggttga ttttttcacc gttacagctg
    26641 atggcttccg cgtaggggcg acagccggga taaccgcact gaccacactg gctctgcggt
    26701 aagatttcgt caattttctc aacgaccgga tcgtcttcca ccgcaaaacg gcgggaggca
    26761 taacccagaa tggcgccaaa cgccaggccc agcaggctca cggcggcaac ggcaatccag
    26821 atagcattca ttacaacttc accaaaccac taaagcccat aaaggccaga gacataagac
    26881 ctgcggtaat taacgcaatg gcattaccgc gaaaaggtgc cgggacatca gccacagcaa
    26941 ggcgttcgcg gatggcggtg aagagcacca tcaccagcga gaaaccgaca gcggcggaaa
    27001 aaccgtacag cgccgactgc aagaaattgt gcccgagatt gatattcagc aacgccacgc
    27061 cgagcactgc acagttggtg gtgataagcg gcaaaaaaat ccccagcaga cggtaaagca
    27121 ccgggctggt tttgcgcacc accatctcgg tgaactgcac gaccacagca atcaccagaa
    27181 taaatgccag ggtgcgcagg taaatcagat taagtgggat caaaatccac gtatcgataa
    27241 gccaggcgca aatagacgcc agcgtcatca caaacgttgt tgccagcccc atgcccatcg
    27301 cggtttccag ttttttggaa acccccataa acggacagag accgagaaac ttgaccagca
    27361 caaagttatt gaccagtata gttccgacaa acagtaacag gtagtcagtc atttttcggc
    27421 ctgaaataaa aaagccgcct attatccgtt aatccagagc aggcgacaac aggttaactg
    27481 taaggttatt acggattcac aaacgtcgct tttacccgcg acgagcgttt gaaataggag
    27541 acgatcaatg cggttgccaa caaagtaaac agcaactggc gaacggctat gccatcttcc
    27601 acgggtgaaa aagcgaatgc ttttactgcc agcaatacgg aaataagcag ccagataata
    27661 tagtgtttag gaacacaacg ccgacgttta aagaaagcga tggtcaacca cagtgtgtaa
    27721 taccacatgg cgatagcggt aataaaagaa acgccccata agatttgtgt cgtcagtgct
    27781 tgtccgccga gcgtttgaaa tgtttgcgga gaagataacg cagcggtata cagcaacaac
    27841 gccagcgtcg tactcaatag agcgactaaa agccaggcca acgggccaag caaccagcct
    27901 ccaatacgtt gtggcgttgt ggtggtcata ggttctccag aatagcgacg caaacaggca
    27961 aatctaattt taggggcgtt attataaggc ttttataacc gatcgctact ttctttattg
    28021 gacatagtgc cagacggact tcggtacctg gccgaggtca aacaaacgcc cgccagaaac
    28081 cagctctgcg cgacggtgat cggcagcacg atacatattg atcagttcct gatcgtccgt
    28141 cagggtgtaa ttaagatggt cgtagagttt ttccagactt tcgagtgaac tgattttgcg
    28201 aaattttaat aagtagtcct gaacagtcat aaaaggtcca taaaataatt aataccaaag
    28261 gggtaggtat tattagtgat gataaaattt caccaaaagt gaacgcttgt gttattacaa
    28321 taataagaat gcgctgatgg caaatattca gggatgaaaa actgctctga aaagagcaac
    28381 gcgctttact atccctgaca atcaccaaca acatcgaaca agataataaa ttcctggttt
    28441 aatatccgac aagtgaaaac atgcaaccgg acgggcagca tggcgctcta caagcgcaga
    28501 gcttacttgt gttgtaccga agcactctgt tcaggtggct gatagttgtc aatgtgactc
    28561 gccacgccaa gaagaatgac tgaaacgaca agaacgatcc aacctgttaa ttcaataaga
    28621 cgattcatta cagcccacat ctctcttgat tgatccatta acttcagggg gtaaatgtta
    28681 cttagcaata atagctccag caagattttt actgaggttt ttgcgatatt tagcttttgt
    28741 cgttggaaaa ttcgctattt ttttgactta atattaaact gttgagcgtg ggtaaaggat
    28801 agtgtcaaat agcaatcata cttcaatgag aggcaatgac atgagcgaca acatccgtgt
    28861 tgggttgatt gggtatggtt atgcgagcaa aaccttccat gcgcccctga ttgcgggcac
    28921 gcccgggctg gaactggcgg taatctccag cagtgatgaa acaaaagtaa aagccgactg
    28981 gccaacggtt acggttgtct ctgagccgaa gcatctgttt aacgatccca acatagacct
    29041 gattgtcatt cctacaccca acgataccca tttcccgtta gccaaagcgg cgcttgaggc
    29101 gggtaaacat gtggtcgttg ataaaccctt taccgtgaca ctgtcacaag cgcgagagct
    29161 ggatgcgctg gcaaaaagcc tggggcgtgt gctgtctgta ttccataacc gtcgttggga
    29221 tagcgatttc ttgacgctaa aaggtttgct cgcggaaggc gtgctgggtg aagttgctta
    29281 ctttgagtct cattttgacc gcttccgtcc gcaggtgcgc gatcgttggc gtgaacaggg
    29341 cggcccaggc agcggtatct ggtacgattt agcaccgcat cttcttgatc aggccattac
    29401 gctatttggt ttaccggtca gcatgacggt agatttggca cagttacggc ccggagcgca
    29461 gtcgaccgat tatttccacg ccatcttgtc ctatccacag cggcgagtca ttttacacgg
    29521 taccatgctg gcagccgctg agtcagcacg gtatatcgtg catggatccc gaggcagtta
    29581 tgtgaaatat ggcctcgatc cacaggaaga acgtctgaaa aatggcgagc gtctgccgca
    29641 ggaagactgg ggctacgata tgcgtgatgg cgtacttacc cgagtggaag gtgaggaacg
    29701 tgtcgaagaa acgctgttga cggtacctgg gaattatccg gcttactatg cggctattcg
    29761 tgatgcgtta aatggcgatg gtgaaaatcc ggttccggca agccaggcaa tccaggtaat
    29821 ggagttgatt gagctgggca tcgaatccgc caaacatcgc gcgactttgt gccttgcatg
    29881 aaaaatggat ggtgcaattt gcaccatcca ttttgttact tcgcggcgac tttttctcgc
    29941 agtgcgcgtt tttcctcagc gctgaggaaa gccatttcca gaccattaat ctgtgcttgg
    30001 cggatttgct cgcgggataa cccagcagct ggcgcggcaa cggtatattc gtgaatgata
    30061 tccactccct gtacgccggg atcgtcagtg ttaatgccgg cacgaatgcc atgctcaagg
    30121 aacgttttca gcggatgtgc agccagctct gctacggtgc tggtctgaat attggaggtc
    30181 agacaggatt caataccaat ttgttgctcg gcgagaaaat ccatcagcgc ccgatcttca
    30241 atggctttta cgccatgtcc aatacgctcc gcacccagtt cacgaatcgc ctgccagatg
    30301 ctttccggcc cggcagcttc gcctgcatgg acggtaatat gccagcccgc atcacgcgca
    30361 aggttgaagt gagaaaggaa cagacttccc gggaaaccaa gttcatcacc ggctaaatca
    30421 agggcggtaa tctggtcacg gtgggctaaa aaggcctcca gctcttgctg acaggcggct
    30481 tcgccgaagg ttcggctcat aatgccgata agcttcgcct gcacaccaaa agtgcggcaa
    30541 ccttcacgta cgccatcgat caccgcttcg acaacacccg ctacaggcag cttatgtgcc
    30601 attgccatgt agcctggtga aaaacgcagc tcgacatagt gcaggccgtt acgggctgca
    30661 tcttcaatgt tttcaaatgc cacgcggcgg caggcatcaa gagaggcgag aactttaacg
    30721 ccccagtcaa gtttggtcag aaagctcacc agatcgggtt cgttggcaat gacctgaacg
    30781 tggggaatca gtgtttccag ggattgtgca ggaagcgaga tattatactg gcggccaagt
    30841 tcaagaatgg tctggggacg aatgttgcca tcaaggtggc gatggatatc agttaatggc
    30901 agggtggtat caatcatggt cgcactcttt ttctggatat aaaagtgcgc accattataa
    30961 aaacaaagca gggtaaaaat ccacgattgc gcaacgattt ttacgttgcg caattggggt
    31021 taacgaacag cgcggatggc gttaattaat ccagccacac ctttttccag tttcgaacgt
    31081 gggcagccgg cattgagacg gacaaaacca cgaccttctt caccgtaggt ataccccggc
    31141 atgatcgcga ctttttcttg ttcgataagt gctttttgca acgcgttgtc gtcaatattc
    31201 aacggacgta aatcaagcca tgccagataa gtggattgtg ggatctgcca gttgagttca
    31261 ggaaacgcgg cgttcatttt atctgcgata tacgtcaggt tatctttcag atagatgcgt
    31321 aaggcatcca gccacggcgc gccttgctga taggcggcga tatgggcagt taacgccagt
    31381 accgaagggg aagaaagccc atcacggcct ttcagtgccg ataaataggc atcgcggcta
    31441 ctgctatttt ctataatccc gtaagcaccg gtcagggcgg gaatattgaa acttttcgag
    31501 cccgacgtta gcaacgccca gtctccgcga gccacattac tccagggaat atgcggctgc
    31561 tcgccccaaa ccatatccat atggatttca tcggaaataa cccgcacacc atgacgctcg
    31621 cacaggtcag ccatgatctc cagctcatcg cacgtccaca ctttcccggt aggattctgt
    31681 gggctacaca ggagcataat tttacattct ggtttcgcca acacggcttc caacttgccc
    31741 atattgcaaa accaaccatc agcctgcttc tctaaagcaa cgggcattac tgtgcgctgg
    31801 ttaccttcaa tggccttgta aaatgcgtca taggcgggtg tgtggatcac cacgccttca
    31861 cctgtttcag accactgacg aatcagttct gaaaccatat agatgacaga agggccatac
    31921 accaccgtct gagaatcgat ggcggtgtaa tgctgggtgg aaaaccagtg ggcaatagca
    31981 gcgagaaact catcgttttt ccagcggctg tagccaaata cgccgtgcat caggcgctga
    32041 ttcagcgcct ctataatgca gggggcagtg gcaaaatcca tgtctgaaat cgtgaacggt
    32101 aacaggtcag cagtgccgaa acggtcagcg acataatccc actgtgtaca ccatgtgcca
    32161 tgacgatcca cgacctttga aaaatcgaac atatcttatc cttatgcctg gacagtatgc
    32221 atcagaccgg ccatttcatc ttttactgac tgaacttgtg gcccgataac aacctgcagg
    32281 ttatgttgat taagttgtac tacgccaatt gcccgattgt ccttcagtgc ctgcacatta
    32341 acaagcgaca tatctttcac agacaaacgc agacgggtaa tgcagttatc gaggctgaca
    32401 atattgtcgg caccgcctaa tgcttcgagg attgcaggaa cgttgtaacc tgatttaccc
    32461 ggcgcagcgg caacggcttt ttcgattgag ctggcaactt cgctatcgcg ccccggggtt
    32521 ttgagattga agcgggtgat agcgaaacgg aagatggcgt agtaaacgac aaaccagatt
    32581 gccgccacca ctggcaccat gtaccacttg gttgacagac catgcaaaat accgaacacc
    32641 acgaagtcga tgatattgcc gtcggtatta ccgatggtga cgccgagcac agacatgacg
    32701 gtgaagccga ggccggttaa cagcgcgtgg atgacataca gaactggcgc tacgaacagg
    32761 aacaggaatt ccagcggttc ggtagtgccg ccaacgacgc aggcgatcag gccagaaatc
    32821 agcagacctt taattttatg gcgattttcc gggcgcgcgc agtgatacat agctaacgct
    32881 gcagctggca gaccgccgag aaacgcaggc attttacctt gcgaaaggaa acgcgtggcg
    32941 ctttcagaaa aaccgtgagt ggtcgggcaa ctcaattgcg tctggaagat ggtcagtgcg
    33001 ccgctgacgg tttgaccgca gacttcctgc gtgccgcctg cgtcggtaaa gcgaattaat
    33061 gccaccagaa tgtgatgcag accaaacggc aacagcagac gttcaccggt accaaacagc
    33121 atcggtccga aatcacccgc gctgtttatc atatggccca agccgctaat acccatggcg
    33181 aaaatcggcc agactaatgg aatcaccagg ccgacaaggc ccatcaccag cgaggagata
    33241 attggtacga agcgcgtacc gccgaagaat gccagcgcat ccggcaggcg gatattatgg
    33301 aaacgctcat gcagcatcca gacgataata ccggcgatca ccgcaccgag gatcccggta
    33361 tcgatcgact ggatcccaag aatgctctgg atgttattgg ctttcagaac cgcggcatcc
    33421 gtggttggca gaatgccttt attggtcaac cagaagttta ccgcgaggtt cattaccgca
    33481 taaccgacga agccagcgaa tgccgctacg cctttatttt cgcgtgccag gcccagcggg
    33541 atggcgatac agaacatgac aggcaggaaa ctaaaagcaa acgagccaat cttactcatc
    33601 caggtaaaga tagcctgcaa cacggggttg cccaggaccg ggatcagggt tatgacatca
    33661 tggctgctaa gagaactacc aatgccgagc ataatgccgc agaacgacaa taatgccacg
    33721 ggtaacatga aggttttgcc taactgctgg aagaactccc acagcgtgac tttcggtgct
    33781 gttttcgccg tcataaaacg actcctcgta gagaacaatc tggattcagt aaattgcgcg
    33841 agaagataaa acgttttatc aaattttagt gaggcataaa tcacattacg caacgataat
    33901 agcgggtata agataaataa aaggtaaaac gttttatctg tcacataatc agggagtagg
    33961 tcatctgcat ggctaccgcc aaaaaaataa ccattcatga tgttgcgctg gctgcgggcg
    34021 tgtcggtaag taccgtttcg ctggtgctta gtggcaaagg gcgaatctct accgccacag
    34081 gagaacgcgt taacgccgcc attgaagagc tgggatttgt gcgcaatcgc caggcgtcgg
    34141 cgctgcgcgg cgggcaaagc ggcgtcattg gtttgatcgt ccgtgattta tctgcgccgt
    34201 tttacgccga attgacggcc ggattgacgg aagctctgga agcgcaggga cggatggttt
    34261 ttttgcttca cggcggtaaa gacggcgagc agctggcaca gcggttttca ctgttactga
    34321 atcagggggt cgatggtgtg gtaattgccg gggctgcagg aagcagcgat gacctgcgac
    34381 ggatggcaga agaaaaagct atcccggtga ttttcgcttc ccgtgccagt tatcttgatg
    34441 atgttgatac ggttcgcccg gacaacatgc aggctgcaca gttgttgacg gagcatctca
    34501 ttcgcaatgg gcatcagcgg atcgcctggc tgggagggca aagttcctca ttaacccggg
    34561 cagaacgggt gggaggctat tgtgcaactc tactaaaatt tggtctgccg tttcacagcg
    34621 attgggtgct ggagtgcaca tccagccaga agcaagctgc ggaagctatc acggcgcttt
    34681 tacgtcataa cccgaccatc agtgctgtgg tttgctataa cgaaactatt gcgatggggg
    34741 catggtttgg tttgctgaaa gcagggcggc aaagcgggga aagcggagtc gatcgttact
    34801 ttgagcaaca agtttcgctg gcggcattta ccgatgcgac accaaccaca cttgatgata
    34861 tacccgttac ctgggccagc acgcctgcgc gggaacttgg taccacactt gcggatcgca
    34921 tgatgcaaaa aatcacccat gaagagacgc attcacgcaa tcttattatt cccgcccggc
    34981 tcattgcagc gaaataatcc tctctttatc tgctatacct ggtagtgtcc tttcctcaag
    35041 gttaatgata aaaaatgtgg cacacagg
//
LOCUS       DAJVUP010000024        34987 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.024, whole genome shotgun sequence.
ACCESSION   DAJVUP010000024 DAJVUP010000000
VERSION     DAJVUP010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34987
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.024"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1244
                     /gene="dsdA"
                     /locus_tag="OQQ75_001098"
     CDS             <1..1244
                     /gene="dsdA"
                     /locus_tag="OQQ75_001098"
                     /EC_number="4.3.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="D-serine ammonia-lyase"
                     /protein_id="HCS1975498.1"
                     /translation="SGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFAETAAT
                     GGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISSSIKARGGIYEVLAHAE
                     KLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVH
                     MSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLG
                     YSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAE
                     PTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMVRLLDGFYTL
                     SDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLV
                     WATGGGMVPEEEMNQYLAKGR"
     gene            complement(1352..2890)
                     /gene="emrY"
                     /locus_tag="OQQ75_001099"
     CDS             complement(1352..2890)
                     /gene="emrY"
                     /locus_tag="OQQ75_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrY"
                     /protein_id="HCS1975499.1"
                     /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI
                     SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL
                     STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI
                     LGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVG
                     GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI
                     GIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK
                     IDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS
                     GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS
                     SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA
                     KGVG"
     gene            complement(2890..4053)
                     /gene="emrK"
                     /locus_tag="OQQ75_001100"
     CDS             complement(2890..4053)
                     /gene="emrK"
                     /locus_tag="OQQ75_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrK"
                     /protein_id="HCS1975500.1"
                     /translation="MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYVYWSMELEDMIS
                     TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA
                     NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL
                     ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGY
                     IAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV
                     VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM
                     TATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL"
     gene            4469..5083
                     /gene="evgA"
                     /locus_tag="OQQ75_001101"
     CDS             4469..5083
                     /gene="evgA"
                     /locus_tag="OQQ75_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system DNA-binding response
                     regulator EvgA"
                     /protein_id="HCS1975501.1"
                     /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL
                     KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK
                     KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD
                     NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG"
     gene            5088..8681
                     /gene="evgS"
                     /locus_tag="OQQ75_001102"
     CDS             5088..8681
                     /gene="evgS"
                     /locus_tag="OQQ75_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system histidine kinase EvgS"
                     /protein_id="HCS1975502.1"
                     /translation="MKFLPYFFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPVRL
                     SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLRE
                     YADHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVTTLHDSMRPLT
                     SSKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGQNDYFIGSNIITSS
                     MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVVLNEVLNRFVDALTNEVRYEVSQNWL
                     DTGNLAFLNKPLELTEHEKQWIKQHPDLKVLENPYSPPYSMTDENGSVRGVMGDILNI
                     ITLQTGLNFSPITVSHNIHAGTQLNPGGWDIIPGAIYSEDRENNVSFAEAFITTPYVF
                     VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELD
                     ALVATQLNSRYMIDHYYPNELYQFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP
                     SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV
                     IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS
                     DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYI
                     CGWQDITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGS
                     GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHS
                     FGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLV
                     HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM
                     QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEHPITLPEKLSILIADDHPTNRL
                     LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS
                     LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI
                     EALKNNTANDLQLMQEILITFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANIL
                     NLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND"
     gene            complement(8737..9882)
                     /gene="yfdE"
                     /locus_tag="OQQ75_001103"
     CDS             complement(8737..9882)
                     /gene="yfdE"
                     /locus_tag="OQQ75_001103"
                     /EC_number="2.8.3.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA:oxalate CoA-transferase"
                     /protein_id="HCS1975503.1"
                     /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPP
                     GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFR
                     PGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
                     DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA
                     YIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPR
                     FSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQA
                     RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS"
     gene            complement(9956..10900)
                     /gene="yfdV"
                     /locus_tag="OQQ75_001104"
     CDS             complement(9956..10900)
                     /gene="yfdV"
                     /locus_tag="OQQ75_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter YfdV"
                     /protein_id="HCS1975504.1"
                     /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA
                     LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL
                     IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
                     NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT
                     LAAHKFEFSAEIVYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII
                     IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS"
     gene            complement(10970..12664)
                     /gene="oxc"
                     /locus_tag="OQQ75_001105"
     CDS             complement(10970..12664)
                     /gene="oxc"
                     /locus_tag="OQQ75_001105"
                     /EC_number="4.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalyl-CoA decarboxylase"
                     /protein_id="HCS1975505.1"
                     /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE
                     GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMI
                     SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG
                     GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL
                     GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML
                     VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVIGDIASSMQGMLAELK
                     QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSSVRDVLRENQDIYLV
                     NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF
                     GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA
                     FRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN"
     gene            complement(12718..13968)
                     /gene="frc"
                     /locus_tag="OQQ75_001106"
     CDS             complement(12718..13968)
                     /gene="frc"
                     /locus_tag="OQQ75_001106"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HCS1975506.1"
                     /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV
                     TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI
                     DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP
                     LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL
                     DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN
                     WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP
                     CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH
                     TAAVLQELGYSDDEIAAMKQNHAI"
     gene            complement(14481..15113)
                     /locus_tag="OQQ75_001107"
     CDS             complement(14481..15113)
                     /locus_tag="OQQ75_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdX family protein"
                     /protein_id="HCS1975507.1"
                     /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAA
                     AERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKT
                     NLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVME
                     NQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN"
     gene            15409..15684
                     /locus_tag="OQQ75_001108"
     CDS             15409..15684
                     /locus_tag="OQQ75_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975508.1"
                     /translation="MKVNLILFSLFLLVYIMACNVFAFSISGGVSERSYKETEKTSAM
                     TTTHSTKLQPSQAILFKMREDAPPLNLTEEITPTYPTKANYLIHPVR"
     gene            complement(15761..16003)
                     /locus_tag="OQQ75_001109"
     CDS             complement(15761..16003)
                     /locus_tag="OQQ75_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdY family protein"
                     /protein_id="HCS1975509.1"
                     /translation="MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYY
                     FTMWLTGGNELVTEIFMFLAPACGLMIRFMVGYGRR"
     gene            16356..17276
                     /gene="lpxP"
                     /locus_tag="OQQ75_001110"
     CDS             16356..17276
                     /gene="lpxP"
                     /locus_tag="OQQ75_001110"
                     /EC_number="2.3.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311285.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) palmitoleoyltransferase"
                     /protein_id="HCS1975510.1"
                     /translation="MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRI
                     GAMARPFLKRRESIARKNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDS
                     RVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQL
                     MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVEN
                     VATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKII
                     EKEIMRAPEQYLWIHCRFKTRPVGESSLYI"
     gene            17632..17703
                     /gene="ypdK"
                     /locus_tag="OQQ75_001111"
     CDS             17632..17703
                     /gene="ypdK"
                     /locus_tag="OQQ75_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_077777854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YpdK"
                     /protein_id="HCS1975511.1"
                     /translation="MKYFFMGISFMVIVWAGTFALMI"
     gene            complement(17768..19006)
                     /gene="alaC"
                     /locus_tag="OQQ75_001112"
     CDS             complement(17768..19006)
                     /gene="alaC"
                     /locus_tag="OQQ75_001112"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HCS1975512.1"
                     /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG
                     NPDGATPPHIVEKLCTVAQRQDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI
                     VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
                     LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY
                     DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG
                     TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKI
                     PEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA
                     MFRADGLLPASSKHIHENAE"
     gene            19383..21080
                     /gene="ypdA"
                     /locus_tag="OQQ75_001113"
     CDS             19383..21080
                     /gene="ypdA"
                     /locus_tag="OQQ75_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     YpdA"
                     /protein_id="HCS1975513.1"
                     /translation="MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKE
                     LLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRY
                     LIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGIIGGMLCETLTMILVIVWA
                     PTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLP
                     LFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQ
                     AMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAV
                     GLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTAR
                     QLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNC
                     CIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERV
                     EANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL"
     gene            21095..21829
                     /gene="ypdB"
                     /locus_tag="OQQ75_001114"
     CDS             21095..21829
                     /gene="ypdB"
                     /locus_tag="OQQ75_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator YpdB"
                     /protein_id="HCS1975514.1"
                     /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH
                     NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP
                     YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA
                     HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI
                     LRLKDLDFEVPVSRSKVKEFRQLMHL"
     gene            21842..22699
                     /locus_tag="OQQ75_001115"
     CDS             21842..22699
                     /locus_tag="OQQ75_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1975515.1"
                     /translation="MKAPGLPADQQFFADLFSGLVLNSQLLGRVWFASQPASLPVGSL
                     CIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPT
                     WLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
                     LHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYTQPLTRESVAQFFNITPNHLSKLF
                     AQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTP
                     GEYSARFQG"
     gene            complement(22702..25197)
                     /gene="ptsP"
                     /locus_tag="OQQ75_001116"
     CDS             complement(22702..25197)
                     /gene="ptsP"
                     /locus_tag="OQQ75_001116"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1975516.1"
                     /translation="MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKA
                     DAKSSLALIGTGTLFNDSCSLNISGSDEEQAQRVLEEYIQVRFIDSDSIQPTQAELTA
                     HPLPRSLSRLNPDLLYGNVLASSVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA
                     TLAEQLNQQLRESDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQ
                     VCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQ
                     FLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCG
                     VLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPG
                     AFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKS
                     IPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQI
                     LWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMT
                     QYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLL
                     LGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEED
                     VRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVG
                     FGVAIPHTKSQWIRHSSISIARLAKPIDWQSEMGEVELVIMLTLGANEGMNHVKVFSQ
                     LARKLVNKNFRQSLFAAQDAQSILTLLEIELTF"
     gene            complement(25222..26259)
                     /gene="ypdE"
                     /locus_tag="OQQ75_001117"
     CDS             complement(25222..26259)
                     /gene="ypdE"
                     /locus_tag="OQQ75_001117"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1975517.1"
                     /translation="MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGS
                     VLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTR
                     EECKIPGLLDGDRQGNDVSAMRVDIGTRSYDEVMQAGIRPGDRVTFDTTFQVLPHQRV
                     MGKAFDDRLGCYLLVTLLRELHSAELPAEVWLVASSSEEVGVRGGQTATRAVSPDVAI
                     VLDTACWAKNFDYGAANHRQICNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQAD
                     MFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIKRLT
                     RETVVQLTDFR"
     gene            complement(26259..27344)
                     /gene="ypdF"
                     /locus_tag="OQQ75_001118"
     CDS             complement(26259..27344)
                     /gene="ypdF"
                     /locus_tag="OQQ75_001118"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1975518.1"
                     /translation="MTLLASLRDWLKEQQLDAVLLSSRQNKQPHLGISTGSGYVVISR
                     ESAHILVDSSYFVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSW
                     ETAHRWKSELNAKLVSATPDVLRQIKTPEEVEIIRLACGIADRGAEHIRRFIQAGMSE
                     REIAAELEWFMRQQGAEKASFDTIVASGWRGVLPHGKASDKIVAAGEFVTLDFGALYQ
                     GYCSDMTRTLLVNGEGVSAESHPLFDVYQIVLQAQLAAISAIRPGVRCQQIDDAARRV
                     ITEAGFGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRI
                     EDVVLVTPQGAEVLYAMPKTVLLTGEA"
     gene            complement(27359..28606)
                     /locus_tag="OQQ75_001119"
     CDS             complement(27359..28606)
                     /locus_tag="OQQ75_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HCS1975519.1"
                     /translation="MAIKKRSATVVPGASGAAAAVKNPQASKSSFWGELPQHVMSGIS
                     RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF
                     GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV
                     PSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP
                     FGGWINGVIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP
                     VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA
                     LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVI
                     TALMVVFLRLMMFRKGKLLIDSL"
     gene            complement(28628..28954)
                     /locus_tag="OQQ75_001120"
     CDS             complement(28628..28954)
                     /locus_tag="OQQ75_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-like phosphotransferase enzyme IIB
                     component 1"
                     /protein_id="HCS1975520.1"
                     /translation="MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD
                     GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM
                     IASEQQ"
     gene            complement(29173..30138)
                     /gene="glk"
                     /locus_tag="OQQ75_001121"
     CDS             complement(29173..30138)
                     /gene="glk"
                     /locus_tag="OQQ75_001121"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HCS1975521.1"
                     /translation="MIKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV
                     IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT
                     AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH
                     VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI
                     TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG
                     FRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL"
     gene            30342..31598
                     /locus_tag="OQQ75_001122"
     CDS             30342..31598
                     /locus_tag="OQQ75_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HCS1975522.1"
                     /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR
                     LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPG
                     LIVALILGLAGGVSLGPEHPIMTINIALAVAIGARLLPRVNRMEWTILASAGTIGALF
                     GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM
                     EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMNQMKNPVLVLGIGGFILGILGVIGG
                     PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA
                     LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML
                     PAWLLLAGKPMMMVNRPKQQPPHDNV"
     gene            31713..32039
                     /locus_tag="OQQ75_001123"
     CDS             31713..32039
                     /locus_tag="OQQ75_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS1975523.1"
                     /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW
                     DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR
                     GHGHRH"
     gene            complement(32180..33418)
                     /locus_tag="OQQ75_001124"
     CDS             complement(32180..33418)
                     /locus_tag="OQQ75_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HCS1975524.1"
                     /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQA
                     GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE
                     IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL
                     LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS
                     LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAY
                     LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP
                     SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV
                     IVVLVVALNIWLLVGTALGL"
     gene            33754..34956
                     /gene="nupC"
                     /locus_tag="OQQ75_001125"
     CDS             33754..34956
                     /gene="nupC"
                     /locus_tag="OQQ75_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupC"
                     /protein_id="HCS1975525.1"
                     /translation="MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLA
                     WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS
                     ALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK
                     ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD
                     ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG
                     WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST
                     LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS
                     ASIAALVL"
BASE COUNT         9232 a         8686 c         8074 g         8995 t
ORIGIN      
        1 gaagtggcac gacctcattg gctgaaggtt taccttatgt tggcctgacc gaacaggatg
       61 ttcaggacgc ccatgcgcgc ttatcccgtt ttgcacccta tctggcaaaa gcatttgctg
      121 aaactgctgc cactgggggg attattgaat cagaactggt tgccattcca gctatgcaaa
      181 aacggctgga aaaagaatat cagcaaccga tcagcgggca actgttactg aaaaaagata
      241 gccatttgcc catttccagc tccataaaag cacgcggcgg gatttatgaa gtcctggcac
      301 acgcagaaaa actggctctg gaagcggggt tgctgacgct tgatgatgac tacagcaaac
      361 tgctttctcc ggagtttaaa cagttcttta gccaatacag cattgctgtg ggctcaaccg
      421 gaaatctggg gttatcaatc ggcattatga gcgcccgcat tggctttaag gtgacagttc
      481 atatgtctgc tgatgcccgg gcatggaaaa aagcgaaact gcgcagccat ggcgttacgg
      541 tcgtggaata tgagcaagat tatggtgttg ccgtcgagga aggacgtaaa gcagcgcagt
      601 ctgacccgaa ctgtttcttt attgatgacg aaaattcccg cacgttgttc cttgggtatt
      661 ccgtcgctgg ccagcgtctt aaagcgcaat ttgcccagca aggccgtatc gtcgatgctg
      721 ataaccctct gtttgtctat ctgccgtgtg gtgttggcgg tggtcctggt ggcgtcgcat
      781 tcgggcttaa actggcgttt ggcgatcatg ttcactgctt ttttgccgaa ccaacgcact
      841 ccccttgtat gttgttaggc gtccatacag gattacacga tcagatttct gttcaggata
      901 ttggtatcga caaccttacc gcagcggatg gccttgcagt tggtcgcgca tcaggctttg
      961 tcgggcgggc aatggtgcgt ctgctggatg gcttctatac ccttagcgat caaaccatgt
     1021 atgacatgct tggctggctg gcgcaggaag aaggtattcg tcttgaacct tcggcactgg
     1081 cgggtatggc cggacctcag cgcgtgtgtg catcagtaag ttaccaacag atgcacggtt
     1141 tcagcgcaga acaactgcgt aataccactc atctggtgtg ggcgacggga ggtggaatgg
     1201 tgccggaaga agagatgaat caatatctgg caaaaggccg ttaataacgt ttcaacgcag
     1261 catcgcaatc ctttccctgg gtgagcgatg ctgccgatag cgcagactta agatccccgg
     1321 tcttacccgc tataaccccc tccttttatc atcacccaac gcctttcgct gtaaacggcg
     1381 gtttcgcaaa ccaaaccaaa accgtaagta agataaaagc aatagccgcc atacggaaaa
     1441 tctcatttgc agaaatagaa agtgactgct gggttatttc attattaatt tcattaagaa
     1501 ctcctgaaag cgaaccataa tatttatcca taatttgtga cgatgaatta aacacggggt
     1561 taaattgatc gatggttgct gtcaactgac tatggtgtaa cgattcgcgt cgtccccaca
     1621 gcgtcattgt caacgacgta ccaactgatc ctgacaaggt acgaaaaaaa ttactcatac
     1681 tcgaggcatt ggcaaattta ttatctggca agcctgaaaa cgaaatcgtt gttaagggta
     1741 aaaagaaaca ggcaacggcg aatccctgaa aaaactgcgg caaaatgatg cctgtaaaat
     1801 caatcgttgg cataaatgtc acagaacgcc agtaatagca aaccgcatac atcaaaaaac
     1861 taaatgtcac taacaaccgc atgtctattt tgttgccata acgtcctatc aaaggtgaaa
     1921 ttaatagtgg catgatgccg atgggcgcat aagcaagtcc ggcccatatc gcattatacc
     1981 ccatcgtttc ctggagtaac tgcggcataa ggacgatcgc tccagagtaa aataaatacg
     2041 cgcatgtgat actcacaata ccaatggtga agttacggga cttaaacaaa ctgagatcaa
     2101 gaatcgggtt ctctgaggtc gactcccaaa tgactaaaga gatcagagaa ataactgata
     2161 ctactgttaa tattattatt gtactcgagt tgaaccaatc cagatcgcgc cctttatcaa
     2221 gcataatttg caagccacca acaccgagca ctaacagggt cagtcctggt agattcattt
     2281 tgaccggtga agtctcagtt tctcttcctt taagtaaggt taagcataat gtcaggacga
     2341 taatccccat agggacattg attaaaaata tccaacccca gctaaagtta tcacaaatat
     2401 aaccgcccaa tatcggccca catatcggag cgataatcac ggtcattgac cataatgcca
     2461 gagcaaatgt tcttttttct ggcggataat tccttaataa taaactctgt gacagtggaa
     2521 ttaacggccc cgccattaac ccctgaacga ctctaaaaaa tatcagcaca tcaagattgg
     2581 tcgataggct acacattaat gaagacagcg aaaaaaaggt tactgaaagt aaaaataatc
     2641 ttaattcgcc tattctttgt gccaacctgc cagtaacagg gatcgcaatg gcatttgcta
     2701 caccaaacga ggtgataacc caggtgcctt cgtctgttga tgctcccaga aagccagata
     2761 ttgtcggtat tgcgacgtta gaaatagtgg aatccaacat ttgcataaat gtcgctaatg
     2821 acaatgcaat agtgacgcac cataacgtcc caccggttaa tggtgccgga gttgatttag
     2881 tgattgccat taaagttgtc cattatgcga aataatgttg ctaatttctt tttctatcgg
     2941 actggtatcg ataactaaag ccttactggt ataagccggc atggaggtca cggttgaagc
     3001 cagctcaggc atctcggcaa tgtcttcgtt cttcgtatca atagttgctg tcatcgataa
     3061 accaatacgc aagggatgtt ccatgagttc ttttggatca agagaaactt caaccggtac
     3121 acgctgaacg attttgatcc agttccctgt cgcattttgt gcaggtaata aggagaacgc
     3181 attgccggtt cccatattga tccctgtcac ccgaccatga aacacaacat tttcaccata
     3241 aagatcgctg ataatattga ccgattgacc aatccgcaca tccgtgagtt gtgtttcttt
     3301 aaagttggca ttaacccaca tttgacgtgc cggtacgaca gccattaacg attgtccggg
     3361 gctcactgtt tcgccgacct gaacacttct ctgggcaata tagccggtaa ccggactctt
     3421 aatatccgta cgtttaagcg ccaaccaggc ttctttagtt gcatccgccg cttcaacgac
     3481 ttgtggctga cggtttaatg gtgtgttcat tactaaagct ttattcgctt tataagcctg
     3541 gatagcggca ttcaatgccg ctttgctact tattaacgta tctttggtat gctccagcgt
     3601 ttcttttgaa ataaccccct gcttcgctaa cggcactcga cggttataat cttctaaaga
     3661 ttgttgatac tgaatacgtg ctgaagcgac ttcggcactg tattgtttat cctgtaagta
     3721 tagtttattc gtttgccgaa caatatttgc cagattattt ttagctttat tgagtgcgat
     3781 agtggcatca gttttatcca gtgaaactaa aatgtcacct tgtcgaacgt agttcgtatc
     3841 tttatgatta acgacagtga cactacctga gacttgtgca gaaattggat ctgcattccc
     3901 cgtgacatag gcgtcatctg tactaatcat gtcttctaat tccattgacc aatagacata
     3961 ggcacctgaa aacgcaataa ataaaactac cgccaataaa gaaaagtatt ttcttctgtt
     4021 agaatgtttt ttatttgaat taatctgttc cactattatc tctcatttct catagatgaa
     4081 atttatgaat tgaatgaaaa gagcattcat tcttcatatc aaacacagtg catgtgttgc
     4141 acattatccc aggaacgttg gaggcctaat ttaaatgagg tgcaaaaaaa acaacagagg
     4201 actaaaccgt ggcttttgca atacaattct tacgcctgta ggattagtaa gaagacttat
     4261 agtgctaact tgaaactata aatcatcggt acaacccctg attttattgt tgacatttca
     4321 tttatgccga ctatttatat ggtatacttg tcgaattatc ttaaaggaag ctcagatttt
     4381 cttattttta ttgagaaaat gagatgacgc cttatgtctg tattactaca gggagaaggg
     4441 agatgcttca ttgcaaaggg aataatctat gaacgcaata attattgatg accatcctct
     4501 tgctatcgca gcaattcgta atttattgat caaaaacgat attgaaatct tagcggagtt
     4561 gactgaaggg ggaagcgccg ttcagcgggt ggaaacactt aagcctgata tcgtcatcat
     4621 tgatgtcgat atccccggag ttaacggtat ccaggtgtta gaaacgctga ggaagcgcca
     4681 atatagcgga attattatta ttgtctccgc taaaaatgac catttttacg ggaaacattg
     4741 tgctgatgct ggcgctaatg gattcgtgag taaaaaagaa ggcatgaaca atatcattgc
     4801 ggctattgaa gctgcaaaaa atggctactg ctatttcccc ttctctctca accggtttgt
     4861 tggaagttta acgtccgacc agcaaaaact cgactcctta tcgaaacaag aaattagtgt
     4921 catgcggtat attcttgatg gcaaggataa taatgacatt gctgaaaaaa tgttcatcag
     4981 caacaaaact gtcagcactt ataaaagtcg cctgatggaa aaattagaat gtaaatcact
     5041 gatggatctt tacacattcg cgcaacgtaa caaaatcggc taatcacatg aagtttttac
     5101 cctatttttt tcttctctgt tgtggtcttt ggtcgaccat aagtttcgca gacgaagatt
     5161 acatcgaata tcgtggcatc agtagtaaca accgtgtcac acttgatcca gtacgtctga
     5221 gcaacaagga attacgttgg ttagcgagca aaaaaaatct tgtgattgca gtacacaagt
     5281 cccaaacggc taccttgttg cataccgatt cgcagcaacg ggttcgtggt attaatgctg
     5341 attatttaaa tcttttaaaa agagcgttaa atatcaaatt aacactccgg gaatacgccg
     5401 atcatcaaaa agcaatggac gcgctggaag aaggtgaagt cgatatagtg ttatcacatt
     5461 tagttgcttc gccgcctctt aatgatgaca ttgctgcaac caaaccactg ataattacct
     5521 ttccggcgct cgtcaccacc cttcacgatt caatgcgacc gcttacctca tcaaaaccag
     5581 taaatattgc tcgagtagca aattatcccc ctgacgaggt aattcatcaa tcatttccaa
     5641 aagcaacaat tatctctttt acaaatttat atcaggcatt agcatccgtc tcagccggac
     5701 agaatgatta ctttattggt agtaacatca ttaccagcag tatgatttcc cgctatttca
     5761 ctcactcctt aaatgtagtg aaatattata actcaccgcg tcaatataat tttttcttga
     5821 ccagaaaaga atctgtcgtt cttaatgaag tactcaatcg atttgttgat gctttaacaa
     5881 atgaagttcg ctatgaagtt tcacaaaatt ggcttgatac aggaaacctg gcctttctga
     5941 acaaaccatt agaactcact gaacatgaaa aacagtggat taagcaacat cccgatttaa
     6001 aggtgctgga aaatccttac tctcctccct attctatgac ggatgaaaat ggctcggttc
     6061 ggggcgttat gggggatatt cttaatatta ttaccttgca aacaggttta aatttttctc
     6121 cgatcaccgt ttcacacaat atccatgccg gaacacagct taaccccggt ggatgggata
     6181 taatacctgg cgctatttat agtgaagatc gagaaaataa tgtttcattt gcagaagctt
     6241 tcataacaac gccatacgtt tttgtcatgc aaaaagcacc tgacagtgaa caaacattaa
     6301 aaaaaggaat gaaagttgcc attccatatt attatgagct gcattcgcaa ttaaaagaga
     6361 tgtatccgga ggttgagtgg ataaaagtcg ataacgccag cgctgcattt cacaaggtca
     6421 aggaaggtga acttgatgct ctggtcgcga cacagctaaa ttcgcgttac atgatcgatc
     6481 attactatcc taatgaactg tatcagtttc ttattcccgg cgttccgaat gcatcgcttt
     6541 cgttcgcttt tcctcgcgga gaaccggaac ttaaggatat tattaataaa gcactgaatg
     6601 caattccccc aagcgaagtt ctgcgcctga cggaaaaatg gattaaaatg cccaatgtga
     6661 ccattgacac atgggacctc tatagcgagc aattttatat tgttacgaca ttatccgttt
     6721 tattagttgg cagtagcctt ttatggggat tctacctgtt acgctcagtt cgtcgtcgta
     6781 aagtcattca gggtgattta gaaaaccaaa tatcattccg aaaagcactc tcggattcct
     6841 taccaaatcc aacttatgtt gtaaactggc aaggtaatgt cattagtcat aatagtgctt
     6901 ttgaacatta tttcactgcg gattactaca aaaatgcaat gttaccatta gaaaacagtg
     6961 actcaccctt taaagatgtt ttttctaatg cgcatgaagt cacagcagaa acgaaagaaa
     7021 atcgaacaat atacacacag gtatttgaaa ttgataatgg catcgagaaa agatgcatta
     7081 atcactggca tacattatgc aatctgccag ccagcgatca tgctgtttat atttgtggtt
     7141 ggcaagatat taccgagacg cgtgatttaa ttcatgcact cgaagtagag agaaataaag
     7201 cgatcaatgc aactgtcgca aaaagtcagt ttctggcaac aatgagtcac gaaataagaa
     7261 caccaataag ctccattatg ggcttcctgg aacttctgtc gggttctggt cttagcaagg
     7321 agcaacgggt ggaggcgatt tcacttgcct acgccaccgg acaatcactc ctcggcttaa
     7381 ttggtgaaat ccttgatgtc gacaaaattg aatcgggtaa ctatcaactt caaccacaat
     7441 gggtcgatat ccctacttta gtccagaaca cttgtcactc tttcggtgcg attgctgcaa
     7501 gcaaatcgat cgcattaagt tgcagcagta catttcctga tcattacctg gttaagatcg
     7561 accctcaggc gtttaagcag gtcttatcaa atttactgag caatgctctc aaatttacca
     7621 ccgagggggc agtaaaaatt acgacctccc tggttcacat tgatgacaac cacgctgtta
     7681 tcaaaatgac gattatggat tctggaagtg gattatcgca ggaagaacaa caacaactct
     7741 ttaaacgcta cagccaaaca agtgcaggtc gccagcaaac aggatctggc ttaggcttaa
     7801 tgatctgcaa agaattaatt aaaaatatgc agggcgattt gtcattagaa agtcatccag
     7861 gcataggaac aacatttacg atcacaatcc cggtagaaat tagccagcaa gtggcgactg
     7921 tcgaggcaaa agcagaacac cccatcacac tacctgaaaa gttgagcata ttaatcgcgg
     7981 atgatcatcc gaccaacagg ctattactca aacgccagct aaatctatta ggatatgatg
     8041 ttgatgaagc cactgatggt gtgcaagcgc tacacaaagt cagtatgcaa cattatgatc
     8101 tgcttattac tgacgttaat atgccgaata tggatggttt tgagttgact cgcaaactcc
     8161 gtgagcaaaa ttcttcctta cccatctggg ggcttacagc caacgcacag gctaacgaac
     8221 gtgaaaaagg gttaagttgc ggcatgaact tatgtttgtt caaaccgttg accctggatg
     8281 tactgaaaac acatttaagt cagttacacc aggttgcgca tattgcacct cagtatcgcc
     8341 accttgatat cgaagccctg aaaaataata cggcgaacga tctacaactg atgcaggaga
     8401 ttctcatcac tttccagcat gaaacgcata aagatctacc cgctgcgttt caagcactag
     8461 aagctggcga taacagaact ttccatcagt gtattcatcg catccacggt gcggctaaca
     8521 tcctgaattt gcaaaagttg attaatatta gccatcagtt agaaataaca cctgtttcag
     8581 atgacagtaa gcctgaaatt cttcagttgc tgaactctgt aaaagaacac attgcagagc
     8641 tggaccagga gattgctgtt ttctgtcaga aaaatgacta aatagcggct cccacaatgt
     8701 tcaaatgtgg gagctattta ccagcacatc ttacatttat gatgagaact cctggcgaat
     8761 ttgttcccca tgctggtcga gcgttgccgc tcccggcata acatgcgggt ccgcgcagcc
     8821 gctgattttt atcggattac ccggcatcat tattcccccg gcttcaatca acatatttct
     8881 cgcctgagtt tgtggcaatt taatggcctc agccacactt aataacggcg cgacgggtac
     8941 accaacttca tgtattctgg ctaaccaaac ttcagctgcc tgcgttttta acgtccgctc
     9001 aatatattgt ttaagaatag cctggttttg tacgcgtaaa atattgctgc taaatcgggg
     9061 atcattaacc agttccgtaa gctccagtgc ctggcataac gcagaaaaaa gcttgtcatt
     9121 accacaacaa atcgtaatcg gcttatcctg agtattgaaa acatcaaaag gtgccatgta
     9181 gggatggcga tttcccagac gttgtggtga cttccctgtc gcgatatatg ccatcagacc
     9241 atgctccaga aaactcagcg tggcatcaaa catcgctata tcgacatgcg cccctctctg
     9301 gctcttttcg cggccataaa gtgcactcac tattccgctg aataaataga caccgccgca
     9361 tagatccgca agagatgtac caacgcgcac tggcggagca tcaggatatc ctgtttccat
     9421 cattatcccg ctcattgcct gaatgatggt atcgtaggca ggagcatctt ttagcggacc
     9481 ggtatgtccg aaacctgacg atgaagcata tatgaggcgc gggttgattt cttgaagcgt
     9541 ttcccatgaa aaccccagtt tttccattgt acctgggcga aaattctcag ctaatacatc
     9601 agcttgtttg agcatattta taaatatact tttatcgtaa tcattcttta aatcaagaac
     9661 cacactctct ttgccatgat taataaaact gtaatagagt gactgtccat ccacataggg
     9721 accaaatgtg cgggtatcat caccatgacc cggcggctca actttaatta cccttgcgcc
     9781 catattacaa agaagttgag ttccgaaagg tccattaagg acatgtgtca tatcgataac
     9841 taataagcct tcaaacggcc ctttgctttc attatttgtc atttgcttat gccttgaaaa
     9901 aagccgaagg tgaaaagaca cttcggcatt tatgtaaaat caataacatg attaattatg
     9961 aaaccagtcg actgacataa atccacaagg gagccgtgac gacaaagccc agtacgctca
    10021 cagccaatga cgctgtacca gtacgggtgt agacattaaa ccggctggca ataataattc
    10081 cggagaatgc cggcggtaat gcgcctgcca gtaccatcat ctgcagatgt tcgctgttca
    10141 aatgacatgc cataccaacg agaagcagtg ccagtggcat cagaatcagc ttcaggaagg
    10201 tgttataaac aatttcggca ctgaactcga atttatgtgc agccagagtc aaccccgcag
    10261 cgaataccgc tacccctgag ttagccttcg caatcagatt aaaggttggg tcccatgctg
    10321 ccggaatttt taccccaacc aacaccagga tcgttgccag aacaggtgcc catactactg
    10381 gctcctttgc cgcagaaatt aatgcactca gattactatt cttcttacca tccgctcctg
    10441 aagaaggatt cagcaaatac agaccaatag gaatagtaat tgcgttaaca ataatagaaa
    10501 taattgctac cactaaacct gttgatacgg aatcaccata aataggatcg agaactgcaa
    10561 accccaggaa tccaatggta ggtgaacctg caattaatgc acatacagct gcttctgcat
    10621 gggtacgttt aaaaaatttg tagcaaccga accaggagaa aaagaaacat ccgacaataa
    10681 ccacaagtga tacaagggtc agacgagtgt ccgcaaaaat catttccctg tttgcccgag
    10741 taatagatac aaatagagcc gcaggaagcg cgtagtttaa taccagttta ttaaatgcgc
    10801 gggcttgatc ttctgaaaaa gtttctcgtc tgccgctaaa ataacccaac agcatgatta
    10861 cgataatagg caataaatcg ccaataaaaa atgttagcat aatagtattt ccgataaggg
    10921 tcccctcacc atcgcataat gaattggcaa gaggagacga tgtcagtatt taattaccag
    10981 cgacttgttt tgggttaagt ttggtaatat ggccactttc agttcctgct gcagggtcga
    11041 tgaccacatt aataatggtc ggtttgcgcg actgaatacc ggtggttaaa gcatgacgaa
    11101 gttcatctgt cgtggtgacg ttatagccaa cgccacgaaa cgcatccatt aatttgtcat
    11161 accttgcatg gtgcaacaga tccgttggag atggtgcacc agcgccactg agatcaacac
    11221 cgtctcctct gtagatgccg ccattattaa aaataacgat cgtcaccggc aggttatatc
    11281 gacaaatcgt ttcaatttcc atcccactga aaccaaaagc actatcacct tcaatggcga
    11341 caaccggaga accagaagtc acgctagcac cgatggcata gcccataccg atgcccatga
    11401 caccccaggt accacaatcc agacgacgac gtggtttata catatcaata atatttcgtg
    11461 cattatccag ggtatttgca ccttcattaa ctaaataaat atcctggttc tcgcgcaata
    11521 cgtcgcgcac agaacttaat gcattaaagt aatttaatgg ttgagtatct gtacttaatt
    11581 tttcatgcat tttttgtgca ttttgctgct tgtggatatt taaaatatcg cgccatacca
    11641 gtggagtcgt aaatgtgttt tgtttcagtt ctgccagcat accttgcata ctggatgcaa
    11701 tatcaccaat gactggcaca gcaatggggc ggttgctgtc aatttcctgc ggttcaatat
    11761 ccagttgaat aaactgtgta tctgccgccc atcctttttt accgtgtgcc aataaccaat
    11821 tcagtcgtgc accaacaagc atgacaacgt cagcatttgc cagggcaaac gaacgcgcag
    11881 ctgccgcaga aagtggatgc gtatcttcaa ggatcccttt cgccatagac attggcagga
    11941 atggaatctg agcactttca ataaattcac gaagctgttc atcagcttgt gaatacgccg
    12001 cgcctttgcc aaggataatt aatggccgtt cagcttttgc taaaagcgaa attgcgctag
    12061 tgactgactt cgggcatggc aataatgctg gcgacggatt ttcaacttta acaatcgtgg
    12121 ttaacgcttc gtctttttcc atcgtcgcgg ccaggacatt tgctggcaaa tcaagataaa
    12181 ctccgccagg gcgacccgat acagagaccc ggatagcgcg tgccaatgca atgccaagat
    12241 cctgcggctg attaacgcga aatgctgctt tggcatacgg ttttgccgca ttcatttggt
    12301 ccagctcttc ataatcacct tgctgtaggt cgacgatcgc gcggtcgctg gagccgctaa
    12361 tcatgatcat cggaaaacca tttaccgttg cgttggccaa tgccgtcaaa ccattgagga
    12421 atcctggcgc agaaactgtc aggcagatcc ccggtttttg ggtaagaaaa ccgcttgccg
    12481 cagcggcata gcctgccgac tgctcatgac gaaaaccaat ataacgaatg ccttccgcct
    12541 gggcatggcg tgccatatcc gtcacaggaa tacctacaac accataaata gtgtcaatat
    12601 tattctgttt taatgcttca acgatgatat gcataccatc tgtcatttga agttgatctg
    12661 acatgattaa taacctcgaa atttttataa attgggagcc agaagccccc gttaatatca
    12721 gatggcgtgg ttttgcttca ttgcagcaat ttcatcgtcg ctataaccta gctcctgcaa
    12781 tacagcagcg gtatgttcac ctaatagcgg cgcagcttta atatccggcg taaaagcaga
    12841 gaatttcatt ggacaaccaa cggtcagata ttttccacgc aacggttgtt ccacttcaac
    12901 aacactgcca ctttggcgca aagagggatc aagtgaaatt tctttcatac ttaaaaccgg
    12961 tgcacaagga atatcaaact gagtcaaata ggccaccgct tcatgtttat caatagtgac
    13021 agtgtatttt tcgatttcag caaaaatatc gaaaatatgt ggctgtcggg catgggctgt
    13081 actgtatgcc ggatcggtaa tccattctgg tttgccgatg gctttacagg tgttttccca
    13141 gttttgctcc tgaatagtga aataaatata ggcgttcgga tcggtttccc agcctttaca
    13201 tttcaggatc cagccaggct gaccgccacc acctgcatta ccaccgcggg gaactgcatc
    13261 accaaatgta ccattcggat actgcgggta ttcttccaga taacccaatt tatcgagacg
    13321 ctgctggtca cgtaatttca cgcggcaaag gttcaatacg gcatcctgca ttgacatggt
    13381 gactcgttgc ccacgccccg ttttttcgcg atgcagcaaa gcagcaagca aaccgatcag
    13441 caaatgcatt ccggtgttgc tgtcacccaa cgctgcagcg cttaccagcg gcggaccatc
    13501 ccaaaaaccc gtagtggatg ccgcgccacc cgctgcctga gcaacgtttt cataggcttt
    13561 tacattcaca taaggcgaac actcatcaaa ccctttgatc gaaccaaaaa tcagacgtgg
    13621 attgatttct tgaatatgct cccaggtgaa gcccatgtga tcaatggccc ctggatgaaa
    13681 gttctcgact aagatatcag cttcgcggat cagcttttcc attacctctt tgccttccgc
    13741 tgttttggta tttaactcaa tagaacgttt gttactgtta agcatggtga agtaaagcgc
    13801 atcgatatca ggaatatctc gcagctggtg acgcgttacg tcaccaacgc cgggacgttc
    13861 aattttaata acgtcagcgc caaaccaggc cagcatttga gtacaagatg ggccagattg
    13921 cacaccggtg aaatcgagaa ctttaattcc ttgaagtgga gttgacatag caatacctat
    13981 tagttaatta aatatgtgtt aatttagcgt ttatttaagg cgtaatatct tctataaata
    14041 acccgcaaaa tatcgtcgta gctgcactcg atatttttaa aatcctgtat caagtgctga
    14101 aaatcatttc atcgccactt ccaattcctt tctgcatggt aagtagtgag gacgaaaaga
    14161 agaatatgat aaatattgat tcgtggtaat cagagagagt cgcgacattt gtgatgttat
    14221 tcttacaact gtaagaagcg ccggtgattt acaagtaagg gtatgattac gctttttaaa
    14281 gcgtaccata aaacataaca taataaatga tttgtgatga cacgggatta ttggggttta
    14341 ctttgaggaa gataaaatgc gtgtttatag aaccgcgagc gccaaataat tttatgacca
    14401 caacctgtcg tattgtggtc ataaaaaatt gtcggctgga gggagttaaa tcctttacct
    14461 caatatactg cctgtcagca ttagttcaca aacagtgctt cgctgtcgac gatgattcca
    14521 tcttccgcac ctttcagcgc caggtttgcc tcgtagtatt gctttttatc aagcagtttc
    14581 tgcgcatcag caagtgcatt acgagtctgt ttaagcggca tcagatattg gttttccatt
    14641 acgccaacac cggccaggcg aagttcttcc attgcgccct ttttatcccc tttcgccatt
    14701 ttttcattgg caatttttat cgcggcttct ttttcgggag ttgctacata actctcagaa
    14761 attccgacag atgcattaat gacaatatat tggtcatcat tgagattggt ctttttacct
    14821 ggcttagcga actttgccca ttcggtactg tcatctgaca gcaaagcgga agcttcattg
    14881 gtcagttctt ttgccttttc tggatcgcca tgaaacagag ccaggcgcgc tacctgcacg
    14941 tcacgcatcg catataaacc ttgttcagag atacgctctg ctgctgccgt tttctgggtt
    15001 tgctgaactt gctgagtttg ctgttgtgcc gctaccggtg cattatcagc agcccataca
    15061 gttgaagatg ccagaattgc tgtgaccatc gtagccataa ttaaacgttt catacttacc
    15121 tcattcttta acagttttag aaaacgccgc catcatattg ggtgagcatg aaatgagaaa
    15181 tcagagagca acggtcattt tgaaagggtt atcttacagt tgtagttatt atcgcaagaa
    15241 gtattttagt cttacaattg taggaatctg cttcctgtcg cagagaacta ttcttatgta
    15301 ccacaaagag atgtcattta ttatatcgat gtaaatattg attaattata tgtaaataca
    15361 gccataacat cgtaggttct cagtgaacca ttttcaggat aactttctat gaaagtaaac
    15421 ttaatacttt tcagcttatt tttattggtc tatattatgg catgcaatgt ttttgcattt
    15481 tccatttctg gtggtgtaag tgagaggagc tataaagaga ctgaaaaaac atcagcgatg
    15541 acgaccacac actctacaaa acttcagcca tcacaggcga ttttgtttaa gatgagagaa
    15601 gatgcgccac cattaaacct cacagaagaa atcacgccta cttatccgac aaaggcgaat
    15661 tatcttattc atcctgtgcg atagcgtctg tcacatggca ggtgaacaat catgtctgat
    15721 gctgatgtga acacctgccc aaatgagcca tcctgaccca ctatcgcctg ccatacccca
    15781 ccataaagcg aatcatcaag ccacaagccg gggcaagaaa cataaatatc tccgtcacta
    15841 gttcattacc gccagttaac cacatggtga agtaataaat gagtgcagcg aggatcacca
    15901 tgccgaagaa agaagagacc gccgatacca cgttcagtac ctgaccgatg tagccgctta
    15961 cgcagacaat acacagggcg agaaacatcc ataaataaat catagctcaa cctcctgccg
    16021 cgctaaaaaa cctgtaactt cagtcacttt aatagtaaga caatccttaa cctctggcaa
    16081 tttttgctaa gcatcaatga aaacagcatg ttaaatgcaa gactgttgtg tacggaaaaa
    16141 tatttacttt gcacgattaa taatcagtag ctgaaagcag tcagcgagtg ataaagtaca
    16201 gataccgcat tcatgctcct cgtggttatg tcctgactag tctttacaca ctttacagga
    16261 accattgtcg tacatgatgg cccaaccaat tgagtgtacc gctgtcgaca tggaatcttc
    16321 tgcgatacaa caattcgtat ctacagaagg taactatgtt tccacaatgc aaattttccc
    16381 gcgagtttct acatcctcgc tactggctca catggtttgg gcttggtgta ctctggcttt
    16441 gggtacagct tccttatcct gttctctgct ttctcggcac gcgtattggc gcaatggcgc
    16501 gaccattcct gaaacgtcgt gaatctatcg cccgtaaaaa cctggaactt tgtttcccgc
    16561 agcattctgc ggaagaacgc gagaagatga ttgccgaaaa ctttcgttca ctcggcatgg
    16621 cgctggtaga aaccggcatg gcatggttct ggcccgacag tcgcgtacgt aaatggtttg
    16681 atgttgaagg gttggataac cttaaacgcg cacaaatgca aaatcgcggc gtaatggttg
    16741 tcggcgtcca ttttatgtcg ctggaactgg gcggccgcgt gatgggactg tgccaaccaa
    16801 tgatggctac ctatcgtcca cataataatc agctgatgga atgggtgcag acccgtgggc
    16861 gcatgcgctc taacaaagcg atgatcggca gaaataatct gcgcggcatt gtcggtgcac
    16921 tgaagaaagg tgaagcggta tggtttgctc ccgatcagga ttatggtcgt aaaggcagct
    16981 ccttcgcgcc gttctttgcg gtggaaaatg tcgccacaac caatggcacc tatgttctct
    17041 cccgtctctc tggcgcagcc atgttgaccg taacgatggt aagaaaagcg gattacagcg
    17101 gatatcgttt gttcatcacc ccagagatgg aaggctaccc gacagatgaa aatcaagccg
    17161 ctgcctatat gaacaagatt atcgagaaag agatcatgcg cgcaccggag cagtacctct
    17221 ggatccactg tcgctttaaa acgcgcccgg tgggagaatc gtcgttgtac atttaacaaa
    17281 ctgctcttac tctttccctc ctcaaatcgg ccataataac ctcatggttt ttatggcttt
    17341 tttcttaagg ttttttcctt cgctgaatat ctaattatta ccgtcagaaa ttaaactgtc
    17401 gccgatatga gacacctgta agttactaaa agtaaataag aaaatgcctc ttgtctcgtt
    17461 tcagttttag gcgtacatta gcgccgtctc gagcagttta gctcagaatt ctggggtgat
    17521 gcccacggta aaatacaggg cttttaaggt cgctttgccc agtgtcaact cactgtatca
    17581 ggtgtaatga agtcattcag gcgtaacagc aattacgcgg agagatgtaa agtgaaatat
    17641 ttctttatgg gcatttcttt tatggtcatc gtttgggccg gtacttttgc cctgatgatc
    17701 taaaagcaaa ctgtgcaatg aaaaacagga gccatcaggc tcctgtttgc atttctgacg
    17761 acggtgttta ttccgcgttt tcgtgaatat gtttgctgct ggcgggtagt aaaccgtcgg
    17821 cacggaacat cgctttaatc cctctgatgg cctgacgaat acggtcgcgg ttttcaatca
    17881 gtgcaaagcg aacatgcgta tcaccatagt cgccaaagcc aatccccggc gagacacaga
    17941 ccttcgcttc gttaagcaat ttcttggcaa ataccagcga gcccatggca gcatacggtt
    18001 ccggtatttt cgcccagaca tacatcgaag ccttcggcat ttcaactatc cagcccgctt
    18061 catgcagccc tttaaccaat acatcacggc ggcgtttgta ctgttcggca atgtcgcgca
    18121 cgcactgttg atcgccctcc agcgccgcaa tcgccgccac ctgcaacggc gtaaaggtgc
    18181 cgtaatcgtg atagctttta atacgagcca gggcgctgac cagcgttttg ttgccaacca
    18241 taaagccgat acgccagccc gccatgttgt agcttttcga cagcgtaaag aactcgactg
    18301 ccacatcgcg tgcacccggt acctgcatga ttgacggcgc tttccagcca tcgtagacga
    18361 tatcggcata ggccaggtcg tggaccacca gcacatcgta gcgtttcgcc agcgccacaa
    18421 ccttttcgaa gaactccagc tccacgcatt gcgcggttgg attcgacggg aagccgagga
    18481 tcatcatctt cggtttcgga taactttcac gaatggcgcg ctccagttcg ttgaagaaat
    18541 cgacaccttc caccagcggc actgagcgta cctgcgcccc ggcaatcacc gcgccataaa
    18601 tatggatcgg gtaacttgga ttcggcacca gcaccgtgtc accatgatcc agcgtcgcca
    18661 gcatcagatg cgccaggccc tctttcgaac caatagtgac gatggcttct gattccgggt
    18721 cgatttcaac gtcgtagcga tcctgatacc agcgggaaat ggcgcgacgt aaccgcggaa
    18781 tgccgcgtga agtggagtaa ccatgcgtgt cctggcgctg ggccacagta cataattttt
    18841 cgacgatatg cggcggagtc gcaccgtccg ggttacccat gctgaaatcg ataatatctt
    18901 cgccgcgccg acgcgcagcc attttcagtt cagcggtgat gttaaaaacg tagggcggga
    18961 gacgatcaat gcgcgtaaag cgacgttcag ggcgagtgtc agccataatt tcctcagatt
    19021 aacgttagcg cccggaccgt ccgagcgacg ctgccacaat ggtggctgtt ttgaaaatag
    19081 cctgattaat ttctgtctgt ccagcgtttt agaacatttt tatcaatggc tttaaatgag
    19141 gaactccact tcaaaaacag gaaatttttc tacgctaaca agaaaattac caccaatttt
    19201 attaacatta taatttcaat aaatttacca gccagaagtg cattatcaag agatacattg
    19261 ctaatacacc atttatcttt caatcccctt ttaaatttat ggtttttcct caaaaacggc
    19321 ctgctggtca tcagccttca ggttacctat catagaggtt taatccttat tcagagtcac
    19381 ccgtgcacga aatattcaac atgctgctgg cggtcttcga tcgggcagcg ttaatgctta
    19441 tctgcctgtt ctttctcatc cgtatccgcc tgtttcgcga gctgttgcac aagtcggcac
    19501 actccccaaa agagttgctt gctgttaccg ccattttctc gctgttcgcc ctgttcagca
    19561 cctggtccgg cgttcccgta gaaggctcgc tggtgaacgt acgtattatc gcggtgatgt
    19621 ccggcgggat tctgtttggc ccgtgggtag gcatcattac cggcgtgatt gcgggtattc
    19681 accggtattt aattgatatc ggcggcgtga cggcgatccc ctgctttatc accagcattc
    19741 tggcgggttg tatatcaggc tggataaacc tgaaaatccc caaagcacag cgctggcgcg
    19801 tcggtattat cggcggcatg ttgtgtgaga cgttgaccat gattctggta attgtctggg
    19861 caccaactac cgcgttgggg atcgatatcg tctctaaaat cggcattcca atgatcctcg
    19921 gtagcgtctg tatcggcttt attgtgcttc tggtgcaaag cgttgagggc gaaaaagagg
    19981 ccagcgccgc gcggcaggcc aagctggcgc tggatatcgc caacaaaacg ctaccgctgt
    20041 ttcgccatgt caatagcgag tcattacgca aggtctgcga aattatccgc gatgacattc
    20101 acgccgatgc ggtggcgatt actaataccg atcatgtgct ggcctatgtt ggcgtgggtg
    20161 aacataacta tcagaatggc gatgacttca ttagcccgac tacccgtcag gcgatgaatt
    20221 acggaaaaat catcattaaa aacaatgatg aagcccaccg cacaccagag attcattcca
    20281 tgctggtgat cccattgtgg gagaaaggcg ttgtgaccgg aacgctgaaa atttactact
    20341 gccacgcgca tcagataacc tcgtcattac aggaaatggc ggttggtctg tcgcaaatca
    20401 tctccacgca actggaggtt tcacgcgccg agcagctacg tgaaatggca aataaggcag
    20461 agcttcgcgc cctgcaaagc aaaattaatc cccattttct gtttaacgct ctgaacgcta
    20521 tttcatcgtc aatccgtctg aatccggata ccgctcgcca gttgatcttt aatctgtcgc
    20581 gttatctgcg ctataacatt gaattaaaag acgatgagca aatcgatatc aaaaaagagc
    20641 tgtatcaaat taaagactat attgccattg agcaggcccg ctttggtgac aagctgacgg
    20701 ttatctatga tattgatgaa gaggtgaatt gctgcattcc cagcctgctg atccagccgt
    20761 tggtggagaa cgccattgtc cacggtattc agccttgcaa aggtaaaggc gttgtcacca
    20821 tcagcgttgc agagtgcgga aatcgggtac gcattgcggt gcgagatacc gggcacggca
    20881 tcgatccaaa ggtgattgag cgggtcgaag cgaatgaaat gccgggcaat aaaattggcc
    20941 tgctgaatgt ccatcatcgc gtgaagttat tgtatggcga ggggctgcat atccgccgcc
    21001 tggagccggg gacggaaatt gcgttttaca ttcctaacca acgcacccca gtcgcctcac
    21061 aggctacgtt attgctttga gccggagtga tattgtgaaa gtcatcattg ttgaagacga
    21121 attcctggca caacaggaac tgagctggct aattaaagag cacagccaga tggagattgt
    21181 cggcaccttt gacgacggtc tggacgtgtt gaagtttttg cagcataacc gcgtcgacgc
    21241 catttttctg gatatcaata ttccgtcgct ggatggcgtg ttgctggcgc aaaacatcag
    21301 ccagttcgcc cataaaccgt ttattgtgtt catcaccgcg tggaaagaac atgcggtaga
    21361 agcgtttgaa ctggaggcgt ttgactacat tctcaaaccg tatcaggagt cacgtattac
    21421 cgggatgctg caaaaactgg aagcggcctg gcaacaacag cagaccagca gtacgcctgc
    21481 cgcgacggta acgcgtgaga atgacaccat taatctggtg aaagatgagc gaataatcgt
    21541 cacgccaatt aacgatatct attacgccga agcgcacgag aaaatgacct ttgtctatac
    21601 gcggcgtgaa tcctacgtaa tgccgatgaa cattaccgaa ttttgcagca aactgccgcc
    21661 gtcgcatttt ttccgctgcc atcgctcatt ttgtgtcaat ctgaacaaaa tacgcgaaat
    21721 cgaaccgtgg tttaataaca cctacattct gcgactgaaa gatctggatt ttgaagtgcc
    21781 ggtcagccgc agcaaagtga aagaatttcg ccagttaatg catctttaat cgggaacttt
    21841 catgaaagca ccaggcttgc ccgccgatca acaatttttc gccgatctgt tcagcggcct
    21901 ggtgcttaac tcgcaactac tggggcgcgt ctggtttgcc agccagcctg cctcgttacc
    21961 ggtgggcagt ttatgtattg attttccccg tctggatatc gtgctgcgcg gcgaatacgg
    22021 caacctgctg gaagcaaagc agcagcgaat ggtggaagga gaaatgctgt ttattccggc
    22081 acgcgcggct aatttaccga tcaacaacaa accggtgatg ctgttaagcc tggtgttcgc
    22141 accgacctgg cttgggttat cgttttacga tagccgcacc acgtcgttgt tgcatcctgc
    22201 tcgccagatc cagcttccca gcctgcaacg cggtgaaggt gaagcgatgc ttaccgccct
    22261 cactcatctt agccgttcgc cgctggagca gaatatcatt cagccactgg tgttaagttt
    22321 gctgcatctt tgccgcaacg tggtgaatat gccgccgggt aattcgcaac cgcgcggcga
    22381 ttttctctat cacagcattt gtaactgggt tcaggataat tatacccagc cgctcacccg
    22441 cgagagcgtg gcgcagtttt ttaatatcac gcccaatcat ctgtcaaaac tgtttgctca
    22501 gcatggaacg atgcgtttta tcgagtatgt gcgttgggtg cgaatggcga aggcgaggat
    22561 gattttgcag aaatatcatc tgtcaattca tgaagtggca cagcgttgcg gttttccgga
    22621 tagcgactat ttttgtcgcg ttttccggcg tcagtttggt ctgacgccgg gagagtacag
    22681 cgcccgtttt cagggctaac gtcagaaggt taattctatt tccagcagcg tcaggatact
    22741 ttgtgcatct tgcgcggcaa acaacgactg gcggaagttt ttattcacca gtttacgcgc
    22801 cagctgcgag aagactttca catgattcat cccttcgtta gcacccagcg tcagcatgat
    22861 caccagttcg acttcgccca tttctgactg ccagtcaatc ggtttcgcca gccgggcaat
    22921 gctgatactg gaatgacgga tccactgaga tttggtgtgc gggatcgcta cgccaaaacc
    22981 aacgccggtg gtaacaatct cttcccgctg ccagacatct tcttccagct caaacggatg
    23041 ttcagtgcgc ccgttaacgc cgaggttgcc gcacaggaac tggatcgcct gctctttatt
    23101 gctaaaatcc tgatcaacaa agatattctc cagcgccagc agtgggcgaa cgtcttcttc
    23161 cggcgtaaag gcggtgagta acgcttcaat ttcctgcgca ctgcggcatt cacatgcctg
    23221 acgcgccagt tcccgacacg cctcgctatc cagttgacga agctggcttt tcaccgccgg
    23281 aatacgcggg ctactcatac tcagctcatc caggcccagc ccaagcagta gcggcagata
    23341 acggctttca ccgcccagtt caccgcaaat gcctacccat ttgccccgct gatgcgcagt
    23401 ggtaactatt tgctgcaaca tgcgcaggaa cgatggcgta atcgggttat atagcggcga
    23461 tacgcgcggg ttattacgat cgaccgcata cagatactgg gtcatatcgt tggagccgat
    23521 actgaagaaa tcgacctcat cgcagaagtg gtcgatgatg tagcacaccg acggcacttc
    23581 caccatgatc ccaagcgtaa tcgtctctgc atgacgcagg ccatcgcgct taagctcaac
    23641 gatcgctttt tggatctcgc ccttcaccca taagatctga tcgagactgt ggaccatcgg
    23701 gatcatcaac tgggcgttgc caaaactggc ggcgcgcaaa atcgcccgta gttgagtgcg
    23761 gaacaggcca gcaaattccg ggtaaatacg taccgcacga tagccgagga acgggttctc
    23821 ttcctgggga atattcagat aaggaatgct tttatcgcca ccgatgtcca ttgtgcggaa
    23881 gataatcggc ttgtcgcccg ctgccagtag cacctgctgg taggcttcaa attgctcctg
    23941 ctcgtccggc gcgctgtcgc gatccatata gagcatttca gtacggaaca gtccaacgcc
    24001 ttccgcgccg ttggcaaacg cgcctggcgc ttccagagcg gtgccgatat tcgccgcaat
    24061 atcaatacgc ttgttatcac gggaataggc cagctgcgcg gcggcctgcg cctgttgttt
    24121 ttggcgttta tccgccagcg tctgtgcgac ctgataataa ccgctcaccg cgtcattcgg
    24181 gttaatcgcc agcacgccgc actgggcgtc aagcaccgcc ggttgcccgg cataacgggc
    24241 aatcgcatcc agcggcaggc cgctcagtac cgggatcgcc gaggcgcggg ccagaatcag
    24301 ggtatgcgag gtgcgcccag ttttctccag aatcatgcct gcaagatttt ttaaatcgag
    24361 gctcaaaaac tggcttgggg ttaaatcctc ggctaccaga atagtcggtt tttccagcac
    24421 cagattgttg cgcggcttca gttccggcca ggtgatatgc agcaactgtt cgctaatatc
    24481 gcgaatgtcg ctaacacgtt cgcgcagata atcactggca gaagcagaaa gtttggcgca
    24541 aacctgctcc atattgctga tgatcgccgc ccccagccct tgatgctgtt ctgtcatcag
    24601 acgacggata ttgcccgcga attcatcatc ctgaatcagc gacaaatggg cgctaaggat
    24661 agttttgctt tcgccgtcac tctcacgcaa ttgctggttc agttgctcgg caagcgttgc
    24721 aaggctgtgc tccagccggg tggaatcttg cgcactggcg gggattgccc gataactgtc
    24781 gaggctgtcg ctttgtaaca gggtcagcgt acccacgccg acgctgcttg ccagcacatt
    24841 gccgtacagt aaatccgggt tcaggcggct taatgaacgc ggcagcggat gcgccgtcag
    24901 ttctgcctgc gttggctgga tgctgtcgct gtcgataaag cgcacctgga tgtactcttc
    24961 caacacgcgc tgcgcctgct cttcatcgct gccgctaatg ttcaggctgc aactgtcatt
    25021 aaataaagta ccggtgccaa tcagcgccag cgagcttttc gcatcggcct ttgcgttctg
    25081 gcgatggttg ataaaggtga tttcgctttg ccactggctg cactgttctt taagttccca
    25141 cgccggacga gcatgaagac cgtttggcaa aggacagaga aattgaatcg ttaacataac
    25201 cgctccgggt taatcaggag atcatctgaa atccgtcagt tgaacaaccg tctcacgcgt
    25261 aagacgttta ataagggcag ataaaagctg ctgcatctgc aaaatgtcac ggcaatcggc
    25321 aatcgatgcg gcgcaatgtc cgtggcgggt tgctggcccc atcaccactg taggcacgcc
    25381 ggtgccggtt aagtgcaccg ctccgccgtc cgtgccgccg ttgctgaaca tatctgcctg
    25441 taacggcacg ccaatttctg ccgccacggt ttcgatccac gcggtaagtt ttggcggcgc
    25501 aatcagcgac ttgtcgctta acaccagcat cggcccgtta caaatctgac gatggttagc
    25561 cgcgccataa tcaaagtttt tcgcccagca ggcggtatca agcacaatgg cgacatccgg
    25621 cgacaccgcg cgggtggcag tttgcccgcc gcgtaccccc acctcttcgc tggaactggc
    25681 caccagccac acttccgcag gcagttcagc gctgtgtagt tcgcgcagta acgtcaccag
    25741 caggtagcaa ccgaggcggt catcaaaggc tttccccatc acccgctggt gagggagaac
    25801 ctgaaaagtt gtatcaaagg tgacgcgatc gcctggacga attcccgcct gcatcacttc
    25861 gtcatacgag cgcgtaccaa tgtccacgcg catggcgctg acgtcattcc cctgccggtc
    25921 gccgtcaagc aggcctggaa ttttgcactc ttcacgggtg gtgatgcgca ccggctgcag
    25981 ctggcgggca gccatgcgca cgttgccaac cggcagcaca tcaattgccc cttcgcggga
    26041 gatgctgcgc accataaatc ccacttcgtc catatgggcg cagatcatca ccttcggccc
    26101 tgtcgattca ttgaggcgga tcagcaccga tcccagacca tcaaatcgca cttctttttg
    26161 caggcgatcc gcttcttcca gcaggatctg ccgcacttcc tgttccgagg aggcgatcgc
    26221 atctgcctcg ctcaacgctt ttaatagcga taaatccatt atgcctctcc cgtgagcaac
    26281 actgttttcg gcatggcgta gagcacttct gcgccttgcg gggtaaccag cacaacatct
    26341 tcgatgcgca cgcccccttg ccctggcaaa taaatccccg gctccacggt cagcaacatg
    26401 cctggctgta gcgtcgtggt gtcccgcggt gaaaaacgcg gatcttcatg gacttcaatg
    26461 ccgatagcgt gaccagtgtt atgaccgaaa tagtcgccaa atccagcctc ggtaatgacc
    26521 cggcgcgcgg cgtcgtcaat ctgctggcag cgcacgccgg ggcgaattgc agagattgcc
    26581 gcgagctgtg cctgcaggac aatctgatag acgtcaaaca gcgggtgaga ttcggcgctc
    26641 accccttcgc cattcaccag caaggtgcgc gtcatatcag agcagtagcc ctgatacagc
    26701 gcaccaaaat cgagagtgac aaactcgccc gctgcaacaa tcttgtcgct ggctttgccg
    26761 tgcggcagca ccccgcgcca gccgctggcg acaatggtgt caaaagaggc tttttctgcg
    26821 ccctgctggc gcataaacca ctccagttca gcggctatct cgcgctcgct catccccgcc
    26881 tgaataaagc ggcgaatatg ctccgctccg cgatcggcaa tcccacaggc gaggcggatt
    26941 atctccacct cctctggcgt tttgatttgc cgcagcacat ccggcgtggc gctaaccagt
    27001 ttcgcattga gttcagactt ccagcggtgc gcggtttccc aactcacctg ctggccttca
    27061 aaaccgagcg tttgcaactg ctcatcggca atgatttgat tgacgatagt ggtaagcgtg
    27121 ttcgtcgcgt caagcaaatg cagctggtag ccttgcgcac gggcttccac ctcaacgaaa
    27181 tagctcgaat ctaccagaat gtgcgcactt tcacggctaa taaccacata gcctgatccg
    27241 gtggagatcc ccagatgcgg ctgtttgttc tgccgtgagg agagaagcac tgcatccagt
    27301 tgttgctcct taagccagtc gcgcagcgaa gcgagtaatg tcatctggat tttccttctt
    27361 acaggctatc gattaacaat ttgcctttac ggaacatcat cagacgcagg aacaccacca
    27421 tcagcgcagt tatgactgcc cccagcgcga tccccgccat atagacgcca aggttagtga
    27481 ccagcggcca tgcccagata gcggattccg ggaaccattg cactgcgccc agccagacag
    27541 cggcggttga gccgacaatc gcgccgacca tatacgacgg aatggcggtg atggggcttt
    27601 ccagcgcaaa cggaatcgca ccctcactaa tccccataaa ggcaaggaac atcgcggtct
    27661 taccctgcgg ataaagttga gcgttgaaca ggcgtttgcc ggttaaacga cggtcaataa
    27721 tggtcgccag ccccagacca atcggaggaa taacgatagc gatagaacga gcggtgaccg
    27781 gtaatacgtg gtcagtggta aagctgaagg caacgaaacc tgcggctttg ttgatcgggc
    27841 caccaaggtc gattgctgtc gccgcggcga tccccattgc gtacatcagc gcgcccttct
    27901 cacctgcggc agtcagcacg gtacggataa cgccgttgat ccagccgcca aagggggtaa
    27961 tgacgtagta catcgccagc atgacaaaaa tggcggaaag aatcggtagc aaaaatgtgg
    28021 ttttgaacgc taacaggaaa tccggtaact ggattttctg gttcatccac ttcacaaggt
    28081 aacccgcgac gatagaaata atcagcgcac caatgaaggt ggacggcacc ggcgaagagg
    28141 tcgcccattg catagtgctg ggatcgaagt tcagcagttg cgtcggctgg gtagacatca
    28201 agccgccgat aaaaccagcc gggaacgcca gtttgccacc gatagagttc gccacaaaag
    28261 cagcaaacat cggaatggca aaaccaaaca acacgccgcc gaaggactgc gacagccagg
    28321 caaatttcag taaggagagg tcgaaaccgg agaatttccc gctattaaga gcatccatga
    28381 tgccgatctc agcaggaatt ttaagccagc tataagcaat cagctggctg aaagcgagga
    28441 tcacaccgcc cataattaag gtcggcacca tgcgtgaaat ccctgacatc acatgctgcg
    28501 ggagttcacc ccagaagctg cttttagagg cctgcggatt cttaactgcc gctgccgcac
    28561 cggatgcgcc aggcacaacg gttgcactgc gttttttaat ggccataaca attatccctg
    28621 tcgaatatta ctgttgttca gaggcaatca tctcttcgat ttctttgatg atgcccgcag
    28681 cgtttttaat tgcgtcctgc aaagtgattt cataaacgtc gcgtgattcg aaacgctcat
    28741 tatcttccgg ggtaactgcc acggagtgga tgatgatggt tgcttcggcg atatcctgcg
    28801 ccgtcaggcg attctggata ccgtccgcgc cctgggtttc aattttcact tcataaccgg
    28861 cttctaccgc cgcttcttcc aacgcctgag cggccataaa ggtgtgagcc aggcccattg
    28921 ggcaggcaca taaggcaatc agtttcttac tcatcgttaa ttcctcattc agtgatagtt
    28981 gacaagtgaa attatgaacg tgcaaaacaa atcgccgtta ccagacaaat aatgcattta
    29041 ctggagaatt aatcccgctg tacggaagtg tgacgcaggt cggccttgtg aggggacaca
    29101 aagaaaaatt gaattaactg tatgatttaa acgattatcg ggagagttac ctcccgatat
    29161 aacaggaagg atttacagaa tgtgccctaa ggtctggcgt aaatgtgcac cggaaccgag
    29221 aagacccgga ttgtcatgga cgatgagata caccggaata tcatggacat attctttaaa
    29281 gcgcccttta tcttcaaatg cagcacggaa accagaggct ttgaagaact caaggaagcg
    29341 cggcacgata ccgcccgcaa taaacacgcc gccaaatgtc ccgagattga gcgccagatt
    29401 gccgccaaaa cggcccataa tgacgcaaaa cagcgacaac gcgcggcggc aatcggtaca
    29461 gctgtcagcc agcgcgcgtt cggtaatatc ttttggcttg agattttctg gcaggcggtt
    29521 gtcagctttc acaattgcgc gatacaaatt caccagccca gggccagaaa gcacgcgctc
    29581 cgccgaaaca tgaccaattt ccgcacgcaa tatttcgagg ataatggcct cttcttcact
    29641 attcggcgca aaatcaacgt gaccgccttc gcccggcaag cttacccaac gcttatcgac
    29701 atggaccaga tgcgcaaccc caagccctgt tccggcaccg taaaccgcaa taggtttacc
    29761 ttctaccggt tctgcgccac caaactgaat cagatgctct tttttcagca tcgggatcgc
    29821 catcgataca gcggtaaaat cgttaataat ttccagatgg ctaaaaccga gattcttttt
    29881 catttcggca attgagaacg cccaggtatg gttggtcatt gccacccagt caccggtaat
    29941 tgggcaagcg atggcaatac agccgtcttt cacctcgacc ttatgttctt caagataaac
    30001 gcgaatgacc gcttcgaggc tggggtaatc aagccctgaa taggtcttag cctgcgagat
    30061 ttcaccactg gcaatatcac acagagcaag acgtgcgttg gtgccgccca catcaccgac
    30121 taatgcatac tttatcattc ttcaactgct ccgctaaagt caaaataatt ctttctcaca
    30181 ctgtaaatac ctgggggcat aacaacaacg ccggaaaggc aggctccctg taaatatcga
    30241 tctgggtcac acatttactt tatcgtttca gcaccaattg cagcgatgcc tttttgcaag
    30301 ctgggcaaac taagtatctg accccgcata aggaatagaa catgctccat ccgcgagcca
    30361 gaaccatgtt gttattatcg ctccccgccg tggcaattgg gattgcgtcc agtcttattc
    30421 tgattgtggt gatgaaaatc gcctcggtat tacagaattt gctctggcaa cgactgccgg
    30481 gaactctggg gatagcccag gattcacctc tctggatcat cggtgtatta acgctaacgg
    30541 gtattgcggt ggggttggtt atccgtttca gccagggtca tgccggacca gaccccgcct
    30601 gtgaaccgct gatcggcgca ccagttccgc cctctgcgct accaggactt atcgtagcat
    30661 taattctcgg tcttgctggc ggcgtcagcc tggggccgga acatccgatc atgaccatca
    30721 atatcgccct tgccgtcgcc attggcgctc gtctgttacc gcgcgtcaac cgaatggagt
    30781 ggactatttt agcctctgcc ggaaccatcg gcgcgctgtt tggcacacct gttgcagcgg
    30841 cgttgatatt ttcgcaaacc ttaaatggca gtagtgaagt tccgctatgg gatcgtctct
    30901 ttgcgccgtt aatggcggca gcagctggtg cactaactac cggattattt ttccatcccc
    30961 atttttcact gcccattgcg cattacggac agatggaaat gaccgatatt ctcagcggtg
    31021 caattgtcgc ggcgattgcc atcgcagcag ggatggtcgc cgtatggtgc ttaccacggt
    31081 tgcacgcgat gatgaatcaa atgaaaaatc cggtgctcgt gctgggtatt ggcggattta
    31141 ttctcggtat tctgggggtt attggtggac cagtttcgct gtttaaaggg ctggatgaga
    31201 tgcagcagat ggtggcaaat caggctttca gcaccagcga ttactttttg ctggcggtaa
    31261 ttaaacttgc cgccctggtc gttgctgccg ccagtggctt tcgcggtggg cgaatcttcc
    31321 cggcagtgtt tgtcggcgtg gcattagggt tgatgctgca tgagcacgta cccgccgtac
    31381 cagcggcaat aaccgtttct tgcgctattc tcggcatcgt gctggtggta acacgcgatg
    31441 gctggttaag tctttttatg gcggcggtcg ttgtacccaa taccacattg ctaccgctgc
    31501 tctgtatcgt catgcttccg gcatggctgt tattagcagg taagccgatg atgatggtca
    31561 atcgtccgaa gcaacagcca ccccacgata acgtttagca aaaaatgctc tcctttatga
    31621 tttaagagtt atggcgatga tacggggctt tacctccccg taatattgcg ttaacaggcc
    31681 gctgacggct tcgatcgtga aggagaataa caatgttcag gtcactgttt ctggcggccg
    31741 ccctgatggc atttaccccg cttgcagcaa acgcaggtga aatcacccta ctgccatcaa
    31801 tcaaattaca aattggcgat cgcgatcatt acggtaatta ctgggacggt ggtcactggc
    31861 gcgaccgtga ctactggcat cgcaattatg agtggcgcaa aaaccgttgg tggcgtcatg
    31921 ataatggcta tcatcgtggc tgggataagc gtaaagcgta tgagcgtggc tatcgtgaag
    31981 gctggcgcga tcgtgacgat catcgcggaa aaggccgcgg acatggacac cgccattaaa
    32041 cacattcgcc aatggagcac aatgcctgat gcgacgctag cgcgtcttat caggcctaca
    32101 aaccggatct ttaacgcgta gggcggataa ggcgtttacg ccgcatccgc caatagtgcc
    32161 agatgcgacg ctcattcaac tacaatccca gcgccgtccc caccaacaac cagatattca
    32221 gcgccacgac cagcactaca atcacccagc ctgtctgttt tacgcgtttg ctgttcacca
    32281 gatcgcccat caacttgctg tcactggtga aaatcagcag tggaaccagc gccagggcga
    32341 taccaaaact taacagcacc tgactcataa ccagaatccg tgtcggatct aatcccatca
    32401 gaatgacaat aaatgacggc agcatggtga ctgtacgacg cacccacagc gggatatgga
    32461 agcgaatgaa cccctgcatc accacctgcc ctgccagtgt ccccactacc gttgaggaca
    32521 gtccggcagc aaccagactt aacccaaaga ccgttgccgc agcatggctt aacagcggtt
    32581 gcagcgtcag ataagcctca tcaagatcgg caacaccagt atgaccagaa aagtggaacg
    32641 ccgccgcagc tgtagccatc atcgccagat tgacaaaacc ggcaatagtc atggcgatag
    32701 ccacatccca tttggtggcg gaataacgtt gttgacgcga accgccatgt aaatgctgag
    32761 tgagcgagga gtgcaaataa atcacatgcg gcataatcgt cgcccctaac acgcctgctg
    32821 ccaggaagac cgcttccgaa gtaggtaaac tcgggatcac cattccttta cccagctgcg
    32881 ccaggttagg ctgggagaaa atcaactcga caatgtaagc cgcggcaaca aacaacagta
    32941 acccgccaat cactttctcc agcggttttt gcccgcgacg ttgcagcatt aaaatcagga
    33001 aagtcgcgat ccccgtcagc accgcgccct gcaacaacga aacaccaaga atgagtttaa
    33061 aaccgatcgc cgcaccaata aattccgcca ggtcggttgc catcgcaata atttctgcct
    33121 gaacccaata gaaccacact acgggacgcg gatagtgatc gcgaatctgc tccgccagat
    33181 ttttaccggt ggcaatccct agtttggcag agaggatctg aatcagcatc gccatcaggt
    33241 tggcccaaac gacaacccac agtagctgat agccgaagct ggcacccgcc tgaatattgg
    33301 tcgcaaagtt accgggatcg atataaccaa tcgccgcaat gaacgcaggt cccattaatg
    33361 cgagcctcat cttgcgcgcc gcccgtccgc tgctactctc aacgcgatag ttcgtcatct
    33421 tgtgcctcta aaacatagcc tttgctatgt ttcatgctat gataaacgag aatgattatc
    33481 aaattcattt aaatggattg tggtgatttc tgtgatagac caggattatg actacgaaaa
    33541 gattgatgac ttgaatgtta tggttatgtt taatgttagc acatttacat aactttcagc
    33601 ttccatacac aacatagcag aaatgtatga cagatcacta tttttgaagc ctgtcacagg
    33661 acgtcattat agtgtgtgtc agatctcgtt ttccttaacc atgttacata gaatgtgcac
    33721 ggaaatttaa cctgcctcat atttggagca aatatggacc gcgtccttca ttttgtactg
    33781 gcacttgccg ttgttgcgat tctcgcactg ctggtaagca gcgaccgcaa aaaaattcgt
    33841 atccgttatg ttattcaact gcttgttatc gaagtgttac tggcgtggtt cttcctgaac
    33901 tccgacgttg gtttaggctt cgtgaaaggc ttctccgaaa tgttcgaaaa actgctcgga
    33961 tttgccaacg aagggactaa cttcgtcttt ggtagcatga atgatcaagg cctggcattc
    34021 ttcttcctga aagtgctgtg cccaatcgtc tttatctctg cactgatcgg tattctccag
    34081 cacattcgcg tgttgccggt gatcatccgc gcaattggtt tcctgctctc caaagtcaac
    34141 ggcatgggca aactggaatc ctttaacgcc gtcagctccc tgattctggg tcagtctgaa
    34201 aactttattg cctataaaga tatcctcggc aaaatctccc gtaatcgtat gtacaccatg
    34261 gctgccacgg caatgtccac cgtgtcgatg tccatcgttg gtgcatacat gaccatgctg
    34321 gaaccgaaat acgtcgttgc tgcgctggta ttgaacatgt tcagcacctt tatcgtgctg
    34381 tcgctgatca acccttaccg tgttgatgcc agtgaagaaa acattcagat gtccaacctg
    34441 cacgaaggtc agagcttctt cgaaatgctg ggtgaataca ttctggcagg tttcaaagtt
    34501 gccattatcg ttgccgcgat gctgatcggc tttatcgccc tgatcgctgc gctgaacgca
    34561 ctgtttgcca ccgtgactgg ctggtttggc tacagcatct ccttccaggg cattctgggc
    34621 tacatcttct atccgattgc atgggtgatg ggtgttcctt ccagtgaagc actgcaagtg
    34681 ggcagtatca tggcgaccaa actggtttcc aacgagttcg ttgcgatgat ggatctgcag
    34741 aaaattgctt ccacgctctc tccgcgtgct gaaggcatca tctctgtgtt cctggtttcc
    34801 ttcgctaact tctcttcaat cgggattatc gcaggtgcag ttaaaggcct gaatgaagag
    34861 caaggtaacg tggtttctcg cttcggtctg aaactggttt acggctctac cctggtgagt
    34921 gtgctgtctg cgtcaatcgc agcactggtg ctgtaagacc atacataaaa aagccgggga
    34981 taattcc
//
LOCUS       DAJVUP010000025        34107 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.025, whole genome shotgun sequence.
ACCESSION   DAJVUP010000025 DAJVUP010000000
VERSION     DAJVUP010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34107
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.025"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(270..482)
                     /gene="rpmE"
                     /locus_tag="OQQ75_001126"
     CDS             complement(270..482)
                     /gene="rpmE"
                     /locus_tag="OQQ75_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HCS1975526.1"
                     /translation="MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFF
                     TGKQRDVATGGRVDRFNKRFNIPGSK"
     gene            685..2883
                     /gene="priA"
                     /locus_tag="OQQ75_001127"
     CDS             685..2883
                     /gene="priA"
                     /locus_tag="OQQ75_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HCS1975527.1"
                     /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG
                     VVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI
                     LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF
                     NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS
                     AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL
                     HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR
                     YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVL
                     DLKGQKVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
                     YYTLHQAQQHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPMFPGVPIS
                     RIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
                     DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE
                     RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWILGPVPALAPK
                     RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG"
     gene            3039..4064
                     /gene="cytR"
                     /locus_tag="OQQ75_001128"
     CDS             3039..4064
                     /gene="cytR"
                     /locus_tag="OQQ75_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CytR"
                     /protein_id="HCS1975528.1"
                     /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV
                     EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI
                     GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
                     LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD
                     PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS
                     IIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR
                     GSTRALP"
     gene            4156..5115
                     /gene="ftsN"
                     /locus_tag="OQQ75_001129"
     CDS             4156..5115
                     /gene="ftsN"
                     /locus_tag="OQQ75_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HCS1975529.1"
                     /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL
                     VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP
                     SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ
                     QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTT
                     AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK
                     ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG"
     gene            5208..5738
                     /gene="hslV"
                     /locus_tag="OQQ75_001130"
     CDS             5208..5738
                     /gene="hslV"
                     /locus_tag="OQQ75_001130"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HCS1975530.1"
                     /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI
                     AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET
                     ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC
                     IYTNHFHTIEELSYKA"
     gene            5748..7079
                     /gene="hslU"
                     /locus_tag="OQQ75_001131"
     CDS             5748..7079
                     /gene="hslU"
                     /locus_tag="OQQ75_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HCS1975531.1"
                     /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL
                     RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR
                     KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI
                     KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG
                     VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA
                     LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA
                     RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL"
     gene            7146..8072
                     /gene="menA"
                     /locus_tag="OQQ75_001132"
     CDS             7146..8072
                     /gene="menA"
                     /locus_tag="OQQ75_001132"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HCS1975532.1"
                     /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL
                     VALLALITAGLLQILSNLANDYGDAVKGSDRPDRIGPLRGMQKGVITQQEMKRALIIT
                     VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV
                     FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV
                     RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP
                     VAMRPMLERTVKGALLTNLLFILGIFLSQWAA"
     gene            8165..8650
                     /gene="rraA"
                     /locus_tag="OQQ75_001133"
     CDS             8165..8650
                     /gene="rraA"
                     /locus_tag="OQQ75_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HCS1975533.1"
                     /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED
                     NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL
                     EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
                     E"
     gene            complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="OQQ75_001134"
     CDS             complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="OQQ75_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring assembly protein ZapB"
                     /protein_id="HCS1975534.1"
                     /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ
                     NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV"
     gene            9406..10251
                     /gene="glpF"
                     /locus_tag="OQQ75_001135"
     CDS             9406..10251
                     /gene="glpF"
                     /locus_tag="OQQ75_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol uptake facilitator protein GlpF"
                     /protein_id="HCS1975535.1"
                     /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEI
                     SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAA
                     LVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
                     GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAG
                     WGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVKEKETTTPSE
                     QKASL"
     gene            10274..11782
                     /gene="glpK"
                     /locus_tag="OQQ75_001136"
     CDS             10274..11782
                     /gene="glpK"
                     /locus_tag="OQQ75_001136"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HCS1975536.1"
                     /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPG
                     WVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI
                     VWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGE
                     LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV
                     RRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT
                     GEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA
                     TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV
                     LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL
                     AVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHDE"
     gene            11917..12927
                     /gene="glpX"
                     /locus_tag="OQQ75_001137"
     CDS             11917..12927
                     /gene="glpX"
                     /locus_tag="OQQ75_001137"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS1975537.1"
                     /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML
                     NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA
                     VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVT
                     ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA
                     AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD
                     NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH
                     IL"
     gene            13024..13770
                     /gene="fpr"
                     /locus_tag="OQQ75_001138"
     CDS             13024..13770
                     /gene="fpr"
                     /locus_tag="OQQ75_001138"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCS1975538.1"
                     /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID
                     GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE
                     VPDCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK
                     RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESAIGLPMNKETSHVMLCGNPQMV
                     RDTQQLLKETRQMTKHLRRRPGHMTAEHYW"
     gene            complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="OQQ75_001139"
     CDS             complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="OQQ75_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspD"
                     /protein_id="HCS1975539.1"
                     /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS
                     ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE
                     QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK"
     gene            complement(14230..14529)
                     /locus_tag="OQQ75_001140"
     CDS             complement(14230..14529)
                     /locus_tag="OQQ75_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 domain-containing protein"
                     /protein_id="HCS1975540.1"
                     /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM
                     TKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA"
     gene            complement(14741..15181)
                     /locus_tag="OQQ75_001141"
     CDS             complement(14741..15181)
                     /locus_tag="OQQ75_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1975541.1"
                     /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDI
                     QTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVG
                     CFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN"
     gene            15282..15881
                     /locus_tag="OQQ75_001142"
     CDS             15282..15881
                     /locus_tag="OQQ75_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiQ family protein"
                     /protein_id="HCS1975542.1"
                     /translation="MKPGCTLFFLLCSALTVTTTAHAQTPDTATTAPYLLAGAPTFDL
                     SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK
                     SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY
                     TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK"
     gene            15989..16756
                     /gene="tpiA"
                     /locus_tag="OQQ75_001143"
     CDS             15989..16756
                     /gene="tpiA"
                     /locus_tag="OQQ75_001143"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HCS1975543.1"
                     /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE
                     MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH
                     KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE
                     GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA
                     AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA"
     gene            complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="OQQ75_001144"
     CDS             complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="OQQ75_001144"
                     /EC_number="3.6.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
                     /protein_id="HCS1975544.1"
                     /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP
                     NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW
                     LAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLAN
                     ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQS
                     DNSFVLLATQRNLLTLNRASAEEIQDHQCEILR"
     gene            complement(17673..18662)
                     /gene="sbp"
                     /locus_tag="OQQ75_001145"
     CDS             complement(17673..18662)
                     /gene="sbp"
                     /locus_tag="OQQ75_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter
                     substrate-binding protein Sbp"
                     /protein_id="HCS1975545.1"
                     /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS
                     AHWKQQTGDNVVMRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI
                     KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW
                     GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA
                     ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAK
                     NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR"
     gene            complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="OQQ75_001146"
     CDS             complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="OQQ75_001146"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014072359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HCS1975546.1"
                     /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLG
                     LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG
                     GDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS
                     HQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAI
                     VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL
                     LAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY"
     gene            complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="OQQ75_001147"
     CDS             complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="OQQ75_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312867.1"
                     /note="FieF, a metal efflux transporter, is a member of
                     the CDF (cation diffusion facilitator) family of
                     transporters; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter FieF"
                     /protein_id="HCS1975547.1"
                     /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV
                     DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI
                     QHLISPTPMIDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM
                     NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI
                     IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP
                     GSDVIIHQDPCSVVPREGKRSMLS"
     gene            complement(21175..21675)
                     /gene="cpxP"
                     /locus_tag="OQQ75_001148"
     CDS             complement(21175..21675)
                     /gene="cpxP"
                     /locus_tag="OQQ75_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-envelope stress modulator CpxP"
                     /protein_id="HCS1975548.1"
                     /translation="MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSH
                     MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKM
                     ANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLKLLSS
                     SNSRSQ"
     gene            21825..22523
                     /gene="cpxR"
                     /locus_tag="OQQ75_001149"
     CDS             21825..22523
                     /gene="cpxR"
                     /locus_tag="OQQ75_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response regulator transcription
                     factor CpxR"
                     /protein_id="HCS1975549.1"
                     /translation="MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS
                     IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF
                     NDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGT
                     EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF
                     KTLRGRGYLMVSAS"
     gene            22520..23893
                     /gene="cpxA"
                     /locus_tag="OQQ75_001150"
     CDS             22520..23893
                     /gene="cpxA"
                     /locus_tag="OQQ75_001150"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HCS1975550.1"
                     /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR
                     QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEM
                     QIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL
                     FDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF
                     LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELER
                     IETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTV
                     NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVS
                     PEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW
                     LPLYKRS"
     gene            complement(23999..24673)
                     /gene="yiiM"
                     /locus_tag="OQQ75_001151"
     CDS             complement(23999..24673)
                     /gene="yiiM"
                     /locus_tag="OQQ75_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418346.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein"
                     /protein_id="HCS1975551.1"
                     /translation="MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQ
                     AEKKVHGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGD
                     IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPL
                     ELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFS
                     RRLWGK"
     gene            complement(24822..25787)
                     /gene="kdgT"
                     /locus_tag="OQQ75_001152"
     CDS             complement(24822..25787)
                     /gene="kdgT"
                     /locus_tag="OQQ75_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate transporter"
                     /protein_id="HCS1975552.1"
                     /translation="MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSI
                     LAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAG
                     LSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
                     EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGL
                     LGILLGVAVIIVTGVPLIIADKLIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKP
                     MAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK"
     gene            complement(26066..26686)
                     /gene="sodA"
                     /locus_tag="OQQ75_001153"
     CDS             complement(26066..26686)
                     /gene="sodA"
                     /locus_tag="OQQ75_001153"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010345169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HCS1975553.1"
                     /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE
                     SLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA
                     IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS
                     GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK"
     gene            26970..28004
                     /gene="rhaT"
                     /locus_tag="OQQ75_001154"
     CDS             26970..28004
                     /gene="rhaT"
                     /locus_tag="OQQ75_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HCS1975554.1"
                     /translation="MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIV
                     SWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
                     IGIAIGITLIVGTLMTPIINGNFDVLLNTEGGRMTLLGVLVALIGVGIVTRAGQLKER
                     KMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV
                     IIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFY
                     AWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVA
                     ANIVGIGMAN"
     gene            complement(28001..28867)
                     /gene="rhaR"
                     /locus_tag="OQQ75_001155"
     CDS             complement(28001..28867)
                     /gene="rhaR"
                     /locus_tag="OQQ75_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418342.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaR"
                     /protein_id="HCS1975555.1"
                     /translation="MAEVATVAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDF
                     CELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKL
                     NLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQ
                     LVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQ
                     FRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMT
                     PSQWRHLNSQKD"
     gene            complement(28923..29759)
                     /gene="rhaS"
                     /locus_tag="OQQ75_001156"
     CDS             complement(28923..29759)
                     /gene="rhaS"
                     /locus_tag="OQQ75_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaS"
                     /protein_id="HCS1975556.1"
                     /translation="MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHG
                     TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLL
                     PQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
                     SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQR
                     YLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGF
                     LQ"
     gene            30047..31459
                     /gene="rhaB"
                     /locus_tag="OQQ75_001157"
     CDS             30047..31459
                     /gene="rhaB"
                     /locus_tag="OQQ75_001157"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HCS1975557.1"
                     /translation="MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHS
                     QNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVDLPVAY
                     RDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
                     PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIG
                     HWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTA
                     LAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFIINP
                     NDDRFINPEAMCSEIQAACRETAQPIPESDAELAQLRGEDFSQLHIVGGGCQNTLLNQ
                     LCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDS
                     EIAHYVAQLHSTRQTKELCA"
     gene            31456..32715
                     /gene="rhaA"
                     /locus_tag="OQQ75_001158"
     CDS             31456..32715
                     /gene="rhaA"
                     /locus_tag="OQQ75_001158"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HCS1975558.1"
                     /translation="MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDD
                     VSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESD
                     TPVSRDQIKPEHFKNWGEWAKANQLGLDFNPSCFSHPLSADGFTLSHPDDSIRQFWID
                     HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISKKLNP
                     AHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAA
                     MLYVPQLLLHVSRPVRWDCDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINH
                     IAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYC
                     QRHDTPAGSEWLESVRAYEKEILSQRG"
     gene            32982..33806
                     /gene="rhaD"
                     /locus_tag="OQQ75_001159"
     CDS             32982..33806
                     /gene="rhaD"
                     /locus_tag="OQQ75_001159"
                     /EC_number="4.1.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
                     /protein_id="HCS1975559.1"
                     /translation="MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAP
                     YKDNVHAQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGVVKVDSDGAGY
                     HILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAV
                     FTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSG
                     STLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISREELIALGKRFGVTPLASALAL"
     gene            33816..>34107
                     /gene="rhaM"
                     /locus_tag="OQQ75_001160"
     CDS             33816..>34107
                     /gene="rhaM"
                     /locus_tag="OQQ75_001160"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HCS1975560.1"
                     /translation="MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIY
                     LDKARNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSEL"
BASE COUNT         8364 a         8898 c         8848 g         7997 t
ORIGIN      
        1 gaacaggcca cgccggtggg agcaccaatg cgcaccccgg ctgaaccctg aacaatgcta
       61 ccgccatact gcgtcatgtc gccctgacgc gccgccggtt ttccgctcat cgtaaaatcc
      121 ttttgaaata aataagaacc agaagcctag cgccagtcaa caacaggaaa tgataatgag
      181 ttaacacccc ggaatttttc agaatttata aaaggcaaaa ttcaggcaca aaaaaagcgc
      241 cgtgcggcgc ttttttcgga aatccggtct tatttgctgc ccgggatgtt gaaacgcttg
      301 ttgaagcggt caacacggcc accggtagca acatcacgct gtttgccagt gaagaacggg
      361 tggcacttgc tgcacacgtc gaggttcagg tcatgaccaa cagtggagcg gattttcatt
      421 acgttaccgc aagagcagct agcagtaatt tcttcgtatt tcgggtgaat atcttttttc
      481 atgggaaaac ctcggtttaa ggccgcgtcg ctcttccagc cctaacgcca gacaccacgc
      541 gatgttaaaa gtatagcttc aatacgatca tttcgtacga aggcgcgaaa tcatacagaa
      601 attaaccagc gtatgcaaac tgatccgcac tcttctacgg caatgtgtat actaacccac
      661 cgaatttcaa gtcaggatga tgctatgccc gttgcccacg ttgccttgcc cgttccgctt
      721 cctcgtacct ttgactatct gctgccagaa ggcatgacgg ttaaagccgg gtgtcgcgtg
      781 cgcgtgccgt ttggcaaaca gcaggagcgc atcggggttg tggtgtcagt tagcgatgtc
      841 agtgagctgc cgcttaacga gctgaaagcg gtagtggaag tgctggacgt tgagccggta
      901 tttactcact ccgtctggcg gttactgctc tgggcggcag attactatca tcatccgatt
      961 ggcgatgtgc tgtttcatgc cttgccgatt ttactgcgcc aggggcggcc tgcggcgaac
     1021 gcgccgatgt ggtactggtt tgccactgaa caaggccagg cggtggatct gaacagcctg
     1081 aaacgctccc ccaagcaaca acaggcgctg gcggcgttac ggcaaggcaa aatctggcgc
     1141 gaccaggtcg ccacgctcga atttaatgat gccgcgttgc aggcgctacg caaaaaaggt
     1201 ctgtgtgatt tagcaagtga aacaccagag tttagcgact ggcgaacgaa ctatgccgtt
     1261 tctggtgagc ggttgcgatt gaataccgaa caggccaccg ccgttggcgc aattcatagc
     1321 gcggcagata ctttttctgc ctggctgctg gcgggcgtta ccggttccgg taaaacggag
     1381 gtttatctca gtgtactgga aaacgtgctc gctcagggca aacaggcgct ggtgatggtg
     1441 ccggaaatcg gcctgacacc gcaaactatc gcccgttttc gtgaacgttt taatgccccc
     1501 gtggaagttc tgcattccgg cctgaacgac agcgagcggc tttctgcgtg gttgaaagcg
     1561 aaaaatggcg aggcggcgat tgtgatcggc acccgctccg cgctgtttac gccgtttaaa
     1621 aatctcggcg tgattgtcat tgatgaagag cacgacagct cctacaagca gcaggaaggc
     1681 tggcgctatc atgcccgcga cctggcggtg tatcgtgcgc acagcgagca aatcccgatt
     1741 attcttggct ccgcaacgcc cgcgctggaa acgttatgca acgtccagca gaaaaaatac
     1801 cgcctgctgc gcctgacccg tcgggcaggg aatgctcgtc cggcaattca acatgtgctg
     1861 gatttaaaag gtcagaaggt gcaggcaggt ctggctccgg cgttaatcac ccgtatgcgc
     1921 cagcatttac aggccaacaa tcaggttatc ctctttctta atcgtcgggg ttttgcgcct
     1981 gcgctgctgt gccacgactg cggctggata gccgaatgcc cacgttgcga tcactactac
     2041 acgctgcatc aggcgcaaca gcatttgcgc tgtcaccact gtgacagtca gcgtccggtg
     2101 ccgcgccagt gcccttcctg cggttccacg cacctggtcc ccgtggggct gggcaccgaa
     2161 cagcttgaac agacgcttgc gccgatgttc cccggcgtgc ccatttcacg tatcgaccgc
     2221 gataccacca gccgcaaagg ggcactggaa cagcaactgg cggaagtgca tcgcggcggc
     2281 gcgaggattt tgatcggcac acaaatgctg gcgaaaggtc accactttcc ggatgtgacg
     2341 ctggtggcgt tactggatgt ggacggcgcg ctgttttctg ccgattttcg ctcggcagaa
     2401 cgtttcgccc agctttacac ccaggtcgcc ggtcgtgccg ggcgtgcggg taaacagggc
     2461 gaagtggtgc tgcaaacgca ccatccggaa catcctctgt tgcaaacgtt gctctataaa
     2521 ggctacgacg cctttgccga acaggcgctg gctgagcgac gcatgatgca gctgccgccg
     2581 tggaccagcc atgtgattgt gcgtgcggaa gatcataaca atcagcacgc gccgctgttc
     2641 ctgcaacaac tgcgtaatct gatcctttcc agcccgctgg cagacgacaa actgtggatt
     2701 ctcggcccgg ttccggctct ggcacctaag cgtggtggcc gctggcgctg gcagatcttg
     2761 ttgcagcacc cttcccgcgt gcgcttgcaa cacatcatta gtggtacgct ggcgcttatt
     2821 aatacaatac cggattcccg caaggtgaaa tgggtgttgg atgtcgatcc catcgaaggc
     2881 taatgcgcaa acgttgcgag gcggatcgaa aaattcaata ttcatcacac ttttcatgaa
     2941 aattctgtaa ccgttttcac gcgctatctg ctaaaaatgt tgccgatgtg aagtaaacat
     3001 ggatgtagta cgcctgacgt accaggcgag gagtgagtgt gaaagcgaag aagcaggaaa
     3061 ctgccgcgac catgaaagac gttgccctca aggcaaaagt ctctacagcg actgtctccc
     3121 gagcattaat gaatcccgat aaagtctccc aggccacccg taatcgggtt gaaaaagcgg
     3181 cccgggaagt gggttattta ccgcagccta tggggcgcaa cgtcaagcgt aatgaatccc
     3241 gcaccattct ggtgattgtc ccggatatct gcgatccctt ctttagcgaa attattcgcg
     3301 gtatcgaagt tacggcggca aatcacggat atctggtgct gattggcgac tgtgcgcatc
     3361 aaaatcagca ggaaaaaacc tttatcgatt tgatcatcac caagcaaatt gatggcatgt
     3421 tgctgctggg ttcaaggctg ccgtttgatg ccagcattga ggaacagcgt aatctgccgc
     3481 cgatggtgat ggcgaacgaa tttgcaccgg aactggagct gcctaccgtt catatcgaca
     3541 atctgaccgc cgcatttgat gcagtaaatt atttatatga gcaagggcat aaacggattg
     3601 gctgtatagc cggtcccgaa gagatgccac tgtgtcacta ccgcctgcaa ggctatgttc
     3661 aggcgctgcg tcgctgcgga attatggttg atccacaata catcgcccgt ggcgacttca
     3721 ccttcgaagc cggaagcaaa gcaatgcaac agctgcttga tcttccacaa ccgcctactg
     3781 cagtcttctg ccatagcgat gtgatggcgc tcggcgcact ttctcaggca aaacgccagg
     3841 ggctgaaagt cccggaagac ctttccataa tcggttttga taacatcgac ctgacgcaat
     3901 tttgtgatcc gccgctgaca accatcgcgc agccgcgtta cgaaatcggt cgggaagcta
     3961 tgctgttatt gcttgatcaa atgcaggggc aacacgttgg cagtggctct cgtttaatgg
     4021 actgcgaact tatcatccgg ggatcaacac gcgcgttacc ttaaagtaaa cctttaagac
     4081 tgccgtgact ggtcaaaggc ccgccgctta agtaacatgg cgggctgacg aacgaataaa
     4141 tacagcgaaa cgatagtggc acaacgagat tatgtacgcc gcagccaacc ggcaccttcg
     4201 cggcgaaaaa agagcacctc acggaaaaag caacgaaatc tgcctgcggt ttctcccgct
     4261 atggtcgcta ttgctgccgc cgttcttgtg acctttatcg gtggtctgta cttcattacg
     4321 catcacaaga aagaagagtc cgagacgctg caaagccaga aagtgaccgg aaacggacta
     4381 ccaccaaaac cagaagaacg ctggcgctac attaaagagc tggaaagtcg ccagccgggt
     4441 gtgcgtgcgc ccacagaacc ttctgccggt ggtgaagtga aaacgccgga gcaactgaca
     4501 ccagaacaac gtcagcttct tgaacaaatg caggctgata tgcgccagca gccaacgcag
     4561 ctggttgagg ttccgtggaa tgaacagacg ccggaacagc gtcagcaaac gctacaacgc
     4621 cagcgtcagg cgcagcaatt agcggagcag caacgcctgg ctcagcagtc gcgtacgact
     4681 gaacaaagct ggcagcagca gacgcgtacg tcgcaagccg cgccggtaca ggcgcaaccg
     4741 cgccagtcta aaccagcttc tactcagcag ccgtaccagg atctgctgca aacccctgcg
     4801 cacacgaccg cgcagtcgaa gccgcagcaa gctgcaccgg ttgctcgtgc cgctgacgcg
     4861 ccaaaaccga cggcggagaa aaaagacgaa cgccgctgga tggtgcagtg cggttcgttc
     4921 agaggcgcgg aacaggcaga gacggtacgt gctcagctgg cgttcgaagg atttgactcg
     4981 aaaatcacca ccaacaatgg ctggaatcgt gtggtcattg gcccggtgaa aggcaaagag
     5041 aacgcagaca gcaccctcaa tcggttgaag atggcgggtc atacaaactg cattcggctc
     5101 gccgccgggg gttgaaaccc tcaaaatccc ccccatctat aattgcatta tgcctcgtac
     5161 ttttgtacgg ggtttgtact ctgtattcgt aaccaagggg tcagctcgtg acaactatag
     5221 taagcgtacg ccgtaacggc catgtggtca tcgctggtga tggtcaggcc acgttgggca
     5281 ataccgtaat gaaaggcaac gtgaaaaagg tccgccgtct gtacaacgac aaagtcatcg
     5341 cgggctttgc gggcggtact gcggatgctt ttacgctgtt cgaactgttt gaacgtaaac
     5401 tggaaatgca tcagggccat ctggttaaag ccgccgttga gctggcaaaa gactggcgta
     5461 ccgatcgcat gctgcgcaaa cttgaagcac tgctggcagt cgcggatgaa actgcatcgc
     5521 ttatcatcac cggtaacggt gacgtggtgc agccagaaaa cgatcttatt gctatcggct
     5581 ccggcggccc ttacgcccag gctgcggcgc gcgcgctgtt agaaaacact gaacttagcg
     5641 cccgtgaaat tgctgaaaag gcgttggata ttgcaggcga catttgcatc tataccaacc
     5701 atttccacac catcgaagaa ttaagctaca aagcgtaagg atctcccatg tctgaaatga
     5761 ccccacgcga aatcgtcagc gaactggata agcacatcat cggccaggac aacgccaagc
     5821 gttctgtggc gattgctctg cgtaaccgct ggcgtcgcat gcagctcaac gaagagctgc
     5881 gccatgaagt gaccccgaaa aatatcctga tgatcggccc gaccggtgtc ggtaaaactg
     5941 aaatcgcccg tcgtctggct aagctggcga atgcgccgtt catcaaagtt gaagcgacca
     6001 aattcaccga agtgggctat gtcggtaagg aagtggattc tattattcgc gatctgaccg
     6061 atgccgccgt gaaaatggta cgcgtccagg ctatcgagaa aaaccgttat cgcgctgaag
     6121 aactggcaga agaacgtatt ctcgacgtgc tgatcccacc tgctaaaaac aactggggac
     6181 agaccgaaca gcagcaggaa ccgtccgctg ctcgtcaggc attccgcaaa aaactgcgtg
     6241 aaggccagct tgatgacaaa gaaatcgaga tcgatcttgc cgcagcaccg atgggcgttg
     6301 aaattatggc tcctccaggc atggaagaga tgaccagcca gctgcagtcc atgttccaga
     6361 acctgggcgg ccagaagcaa aaagcgcgta agctgaaaat caaagacgcc atgaagctgc
     6421 tgattgaaga agaagcggcg aaactggtga acccggaaga gctgaagcaa gacgctatcg
     6481 acgctgttga gcagcacggg atcgtgttta tcgacgaaat cgacaaaatc tgtaagcgcg
     6541 gcgagtcttc cggtccggat gtttctcgtg aaggcgttca gcgtgacctg ctgccgctgg
     6601 tagaaggttg caccgtttcc accaaacacg ggatggtcaa aactgaccac attctgttta
     6661 tcgcttctgg cgcgttccag attgcgaaac cgtctgacct aatcccggaa ctgcaaggtc
     6721 gtctgccaat ccgcgttgaa ctgcaggcac tgaccaccag cgacttcgag cgtattctga
     6781 ccgagccgaa tgcctctatc accgtgcagt acaaagcact gatggcgact gaaggcgtaa
     6841 atatcgagtt taccgactcc ggtattaaac gcatcgcgga agcggcatgg caggtgaacg
     6901 aatctaccga aaacatcggt gctcgtcgtt tacacactgt tctggagcgt ttaatggaag
     6961 agatttccta cgacgccagc gatttaagcg gtcaaaatat cactattgac gcagattatg
     7021 tgagcaaaca tctggatgcg ttggtggcag atgaagatct gagccgtttt atcctataat
     7081 cgcgttcaat cattttcatc attgtttgat ggggctgaaa ggccccattt ttattggcgc
     7141 gtattatgac tgaacaacaa attagccgaa ctcaggcgtg gctggaaagt ttacgaccta
     7201 aaaccctccc cctcgccttt gctgcaatta tcgtcgggac ggcgctggca tggtggcaag
     7261 gtcattttga tccgctggtc gccctgctgg cactgattac cgccgggcta ttacagatcc
     7321 tttctaacct cgccaatgat tacggcgatg cggtaaaagg cagcgataga cctgaccgca
     7381 ttgggccgct acgcggcatg caaaaagggg tcattaccca gcaagagatg aaacgggcgc
     7441 tcattattac cgtcgtgctc atctgtctct ccgggctggc actggttgca gtggcgtgcc
     7501 atacgctggc tgattttgtc ggtttcctga ttcttggcgg gttgtcgatc attgccgcta
     7561 tcacctacac cgtgggcaat cgtccttatg gttatatcgg tctgggggat atttccgtac
     7621 tggttttctt tggctggtta agcgtcatgg ggagctggta tttacaggct catacattga
     7681 ttccggcact gatccttccg gcgaccgcat gcggcctgct ggcaacggca gtactgaaca
     7741 ttaataacct gcgtgatatc aatagcgacc gagaaaacgg caaaaacacg ctggtggtgc
     7801 gcttaggtga agtgaacgcg cgtcgttatc atgcctgcct gctgatgggc tctctggtat
     7861 gtctggcgct gtttaatctc ttttcgctgc atagcctgtg gggctggctg ttcctgctgg
     7921 cggcaccgtt gctggtgaag caagcccgtt atgtgatgcg ggaaatggac ccggtggcga
     7981 tgcgaccgat gctggaacgc actgtcaagg gggcgttact gactaacctg ctgtttattt
     8041 tagggatatt cctaagccag tgggcagcat aactgacaaa tatcaattaa caattgatga
     8101 ttttgccaac agcccacata gcgcgatata ctgaaaattc tcgcagcaac tgaatgttaa
     8161 gcctatgaaa tacgatactt ccgagctttg tgacatctat caagaagatg ttaacgtcgt
     8221 ggaaccgctg ttctccaact ttggcggacg ggcgtcgttt ggcggacaaa taatcacggt
     8281 aaaatgtttc gaggacaacg ggttgctgta cgatctgctc gaacagaatg gccgtggtcg
     8341 tgttcttgtc gtcgatggcg gtggttctgt tcgtcgcgca ctggtcgatg ctgaactggc
     8401 gcgtctggca gtacaaaatg aatgggaagg tctggttatt tacggcgcgg tgcgtcaggt
     8461 agatgacctg gaagagttgg atatcggcat ccaggcgatg gcggcaattc cggttggtgc
     8521 cgctggcgaa ggcattggcg aaagcgatgt ccgcgtcaat tttggcggtg taaccttctt
     8581 ctccggcgac catctttatg ccgacaatac cgggattatt ctttcagaag atccgctgga
     8641 tattgaatga taagaaaggc accgcaaggt gccttttttc tgcgttacct gttggcctac
     8701 acagtaaaga aattacgcga aagatgaagc gtaatcagac ctcttccatg cgacccagca
     8761 gggcctgcag acgttcctgc cagccgttct gctgttcttt cagatggttg ttctcacgct
     8821 ccagctcttc gcgctgatgc tgggcatttt gaacttcctg cgacagtgag ttgttttttt
     8881 ctttcagctc ttcgatttcc atctgcaaca gagtgatggt atcaatcgcc tgctgtactt
     8941 ttgcttccag tttctcaaac acttctaatg acattgtcat acctctcctg aattgcaagg
     9001 cgttgatgga taaaaaatcc tcgtcccgat taccggtgac gccttaataa atacgagcgc
     9061 actttagtta gctccgattg tatgaagccg cgccatcgct gtccagcggc acgccttgca
     9121 gattacggtt tgccacactt ttcatccttc tcctggtgac ataatccaca tcaatcgaaa
     9181 atgttaataa atttgttgcg cgaatgatct aacaaacatg catcatgtac aatcagatgg
     9241 aataaatggc gcgataacgc tcattttatg acgaagcaca cacattttaa gttcgatatt
     9301 tctcgttttt gctcgttaac gataagttaa cagcatgcct acaagcatcg tggaggtccg
     9361 tgactttcac gcatacaaca aacattaact cttcaggatc cgattatgag tcaaacatca
     9421 accttgaaag gccagtgcat tgctgaattc ctcggtaccg ggttgttgat ttttttcggt
     9481 gtgggttgcg ttgcagcact aaaagtcgct ggtgcgtctt ttggtcagtg ggaaatcagt
     9541 gtcatttggg gactgggggt ggcaatggct atctacctga ccgcaggggt ttccggcgcg
     9601 catcttaatc ccgctgttac cattgcattg tggctgtttg cctgtttcga caagcgcaaa
     9661 gttattcctt ttatcgtttc acaagttgcc ggcgctttct gtgctgcggc tttagtttac
     9721 gggctttact acaatttatt tttcgacttc gagcagactc atcacattgt tcgcggcagc
     9781 gttgaaagtg ttgatctggc aggcactttc tctacttacc ctaatcctca tatcaatttt
     9841 gtgcaggctt tcgcagttga gatggtgatt accgctattc tgatggggct gatcctggcg
     9901 ttaacggacg atggcaacgg tgtaccacgc ggccctttgg ctcccttgct gattggtcta
     9961 ctgattgcgg tcattggcgc atctatgggc ccattgacgg gttttgccat gaacccagcg
    10021 cgtgacttcg gtccgaaagt ctttgcctgg ctggcgggct ggggcaatgt cgcctttacc
    10081 ggcggcagag acattcctta cttcctggtg ccgctttttg gccctatcgt tggcgcgatt
    10141 gtaggtgcat ttgcctaccg caaactgatt ggtcgccatt tgccttgcga tatctgtgtt
    10201 gtgaaagaaa aggaaaccac aactccttca gaacaaaaag cttcgctgta atatgactac
    10261 gggacaatta aacatgactg aaaaaaaata tatcgttgcg ctcgaccagg gcaccaccag
    10321 ctcccgcgcg gtcgtaatgg atcacgatgc caatatcatt agcgtgtcgc agcgcgaatt
    10381 tgagcaaatc tacccaaaac caggttgggt agaacacgac ccaatggaaa tctgggccac
    10441 ccaaagctcc acgctggtag aagtgctggc gaaagccgat atcagttccg atcaaattgc
    10501 agctatcggt attacgaacc agcgtgaaac cactattgtc tgggaaaaag aaaccggcaa
    10561 gcctatctat aacgccattg tctggcagtg ccgtcgtacc gcagaaatct gcgagcattt
    10621 aaaacgtgac ggtttagaag attatatccg cagcaatacc ggtctggtga ttgacccgta
    10681 cttttctggc accaaagtga agtggatcct cgaccatgtg gaaggctctc gcgagcgtgc
    10741 acgtcgtggt gaattgctgt ttggtacggt tgatacgtgg cttatctgga aaatgactca
    10801 gggccgtgtc catgtgaccg attacaccaa cgcctctcgt accatgttgt tcaacatcca
    10861 taccctggac tgggacgaca aaatgctgga agtgctggat attccgcgcg agatgctgcc
    10921 agaagtgcgt cgttcttccg aagtatacgg tcagactaac attggcggca aaggcggcac
    10981 gcgtattcca atctccggga tcgccggtga ccagcaggcc gcgctgtttg gtcagttgtg
    11041 cgtgaaagaa gggatggcga agaacaccta tggcactggc tgctttatgc tgatgaacac
    11101 tggcgagaaa gcggtgaaat cagaaaacgg cctgctgacc accatcgcct gcggcccgac
    11161 tggcgaagtg aactatgcgt tggaaggtgc ggtgtttatg gcaggcgcat ccattcagtg
    11221 gctgcgcgat gagatgaagt tgattaacga cgcctacgat tccgaatatt tcgccaccaa
    11281 agtgcaaaac accaatggtg tgtatgtggt tccggcattt accgggctgg gtgcgccgta
    11341 ctgggacccg tatgcgcgcg gggcgatttt cggtctaact cgtggggtga acgctaacca
    11401 cattatacgc gcgacgctgg agtctattgc ttatcagacg cgtgacgtgc tggaagcgat
    11461 gcaggccgac tctggtatcc gtctgcacgc cctgcgcgtg gatggtggcg cagtagcaaa
    11521 caatttcctg atgcagttcc agtccgatat tctcggcacc cgcgttgagc gcccggaagt
    11581 gcgcgaagtc accgcattgg gtgcggccta tctcgcaggc ctggcggttg gcttctggca
    11641 gaacctcgac gagctgcaag agaaagcggt gattgagcgc gagttccgtc caggcatcga
    11701 aaccactgag cgtaattacc gttacgcagg ctggaaaaaa gcggtcaaac gcgcgatggc
    11761 gtgggaagaa cacgacgagt aatgtaaatg ccggatgaag cgtttatgcc gcatccggta
    11821 gtcctgaaac gtgcgggggc aaccccgcac acatcaataa tcccaccctt cccctgtgct
    11881 acacttcgcg ccattcctta ctgcttagag tttgctatga gacgagaact tgccatcgaa
    11941 ttttcccgcg tcaccgaatc tgcggcgctg gctggctaca aatggttagg acgcggcgat
    12001 aaaaacaccg cggacggcgc ggcggtaaac gccatgcgta ttatgctcaa ccaggtcaac
    12061 attgacggca ccatcgtcat tggtgaaggt gaaatcgacg aagcaccgat gctctacatt
    12121 ggtgaaaaag tcggtactgg tcgcggcgac gcggtagata ttgctgttga tccgattgaa
    12181 ggcacgcgca tgacggcgat gggccaggct aacgcgctgg cggtgctggc agtaggcgat
    12241 aaaggctgct tcctcaatgc gccggatatg tatatggaga agctgattgt cgggccggga
    12301 gccaaaggca ccattgatct gaacctgccg ctggcggata acctgcgcaa tgtagcggcg
    12361 gcgctcggca aaccgttgag cgaactgacg gtaacgattc tagctaaacc acgccacgat
    12421 gccgttatcg ctgaaatgca gcaactcggc gtacgcgtat ttgctattcc ggatggcgac
    12481 gttgcggcct caattctcac ctgtatgcca gacagcgaag ttgacgtgct gtacggtatt
    12541 ggtggcgcgc cggaaggcgt agtttctgcg gcggtgatcc gcgcattaga tggcgacatg
    12601 aacggtcgtc tgctggcgcg tcatgacgtc aaaggcgaca acgaagagaa tcgtcgcatt
    12661 ggcgagcagg agctggcacg ctgcaaagcg atgggcatcg aagccggtaa agtattgcgc
    12721 ctgggcgata tggcgcgcag cgataacgtc atcttctctg ccaccggtat taccaaaggc
    12781 gatctgctgg aaggcattag ccgcaaaggc aatatcgcga ctaccgaaac gctgctgatc
    12841 cgcggcaagt cacgcaccat tcgccgcatt cagtccatcc actatctgga tcgcaaagac
    12901 ccggaaatgc aggtgcacat cctctgattg atttgatcga ttgagccttc cagtccttcg
    12961 ggactggaat ttttttgttc ggagaacgaa gataaggcaa gtcaatcaaa acaggagaaa
    13021 aacatggctg attgggtaac aggcaaagtc actaaagtgc agaactggac cgacgccctg
    13081 tttagtctca ccgttcacgc ccccgtgctt ccgtttaccg ccgggcaatt caccaagctt
    13141 ggccttgaaa tcgacggcga acgcgtccag cgcgcctact cctatgttaa ctcgcccgat
    13201 aatcccgatc tggagtttta cctggtcacc gtccccgatg gcaaattaag cccacgattg
    13261 gcggcactga aaccaggcga tgaagtgcag gtggttagcg aagcagctgg cttctttgtt
    13321 ctggatgaag taccagattg cgaaacgcta tggatgctgg caaccggtac agcgattggc
    13381 ccttatttat cgattctgca actaggcaaa gatttagatc gcttcaaaaa tctggtcctg
    13441 gttcacgccg cacgttatgc cgccgactta agctatttgc cactgatgca agaactggaa
    13501 aaacgctacg aaggcaaact gcgcattcag acggtggtca gtcgggaaac ggcagcgggg
    13561 tcgctcaccg gacggatacc ggcattaatt gaaagtgggg aactggaaag cgcgattggc
    13621 ctgccgatga ataaagaaac cagccatgtg atgctgtgcg gcaatccaca gatggtgcgc
    13681 gatacacaac agttgctgaa agagacccgg cagatgacga aacatttacg tcgccgaccg
    13741 ggccatatga cagcggagca ttactggtaa gcggttactt atcgataaac ggcacgatga
    13801 gcaaatccgc actcatctta ttgatcatcc cgcgatatgc tggcatcaaa cggttgataa
    13861 atgagtgatg atgaccacag acaaggaggt cgcactgctc tttttgcata atttccagca
    13921 gtgtttccgg catttctccg cgttcaatac gcagttttgt cttcggccat tgaatatttt
    13981 tcgtcagttt atacagcttg ttatccgact tattcttcaa caattgaaga atatcttctg
    14041 ttgcagggaa gtagataccc ggatacaact cgcttaagcc atcatcaata tgaattaacg
    14101 tcaggtgagc gtcattatgt ctggcgagct ccagagcttt attcaccagt aaggcatctt
    14161 cttcattccc ggaaattgcc acgccaatgt gtttataagc catgtttaac tccttctaaa
    14221 gcaactccat caagctaacg aacgcagtga taactcaaaa ataatcatct cggcctggca
    14281 tgagaaagtg aaggccgcat caagctcaac ttgcccctcc agatccttaa tcttgtaggc
    14341 cacgctggcc ccttcatctg cagaggatgc agcggcggca agctctttca gtttggtcat
    14401 aaaagactct gcttcttcgc gggtggcaaa aaagcgcgaa aacttactgg tacagttgtc
    14461 gttatcaatc accgtaccga tatcaatcgc acatccttta gtactgcatt tatctacgac
    14521 atctttcata gggcacctct gtatattcgc ctctctgtcg attacgactt aagaataatg
    14581 cgccgttaag ggaagaacaa acaagtaatg atcttatgga ttaccatttt ttttgatatt
    14641 gcttaaggtg aagagttcag aaggattttc cgggtattgt catttgcatc gtggaaataa
    14701 caatcccgga aaaaaatagc agtaagagat atattaaagg ttaattactt gatttattgt
    14761 cggctttata cttcacatcc tgagtatctt taccatattt attttcgcct tgtgtgccaa
    14821 caaacgcacc aagatcgata agcatcatca ccagaatcaa cgtcgggaca aaacacccca
    14881 ccgcccattg ccagacaccc ggtaaaatcg cccagttacc cgccagcagc atccacgcca
    14941 caatcatcag aaatgcccat gcgccggaac gcccgcgatc atgcaagcgc ttaacagtta
    15001 ctgccgctgt tggccaaagc aagcacacaa ggcaaaacgc cgcggtctga atatcgagta
    15061 aatttttacc cgccagtgag aaaagcacca gcatgcctgc gaaccacagg cctatccaaa
    15121 tccagaaatc acggcgtcca atacgccctt taaatgagaa taaccattgc tgtatggtca
    15181 tgtaagttcc ttgatggttg tcttttccag gattctaccc ttttgacaag ggcgacagat
    15241 atcgttttaa tcggagccag tcataacaaa aggtactgtc aatgaagcca gggtgtacgc
    15301 tgttttttct cttatgttct gcattaaccg ttacaacaac ggcgcatgca caaacaccag
    15361 atacggcaac gaccgcgcct tatctgctgg ctggagcccc tactttcgat ctctccatca
    15421 gccagtttcg agaagacttt aacagccaga atcctagcct gccactgaac gaatttcgtg
    15481 ccatcgacag cagtcccgac aaagccaatc tcactcgtgc tgcaagtaaa attaacgaga
    15541 acttgtatgc ttctacagcg ctggagcgcg gtaccttaaa aatcaaaagc attcaaatga
    15601 cctggctacc catccagggg ccagagcaaa aagcagcgaa agcgaaagct caggaataca
    15661 tggcagcagt gatccgcaca ctcaccccat taatgaccaa aacacaaagc cagaaaaaac
    15721 tgcagtcgct gctaacggcg gggaaaaaca aacgttatta caccgagaca gaaggtgcac
    15781 tgcgttatgt tgtcgcggac aacggcgaaa aggggctgac cttcgctgtt gaaccgatta
    15841 agctggcgct atctgaatcg cttgaaggtt tgaataaatg acaaaaagca aagcctttgt
    15901 gccgatgaat ctctatactg tttcacagac ctgctgccct gcggggcggc catcttcctt
    15961 tattcgctta taagcgtgga gaattaaaat gcgacatcct ttagtgatgg gtaactggaa
    16021 actgaacggc agccgccaca tggttcacga gctggtttct aacctgcgta aagagctggc
    16081 aggtgttgct ggctgtgcgg ttgcaatcgc accaccggaa atgtacatcg atatggcgaa
    16141 gcgcgaagct gaaggcagcc acatcatgct gggtgcgcaa aacgtggacc tgaacctgtc
    16201 cggcgcattc accggtgaaa cctctgctgc tatgctgaaa gacatcggcg cacagtacat
    16261 catcatcggc cactctgaac gtcgtactta ccacaaagag tctgacgaac tgatcgcgaa
    16321 aaaattcgcg gtgctgaaag agcagggtct gactccggtt ctgtgcatcg gtgaaaccga
    16381 agctgaaaac gaagcgggca aaactgaaga agtttgcgca cgtcagatcg acgcggtact
    16441 gaaaactcag ggtgctgcgg cattcgaagg tgcggttatc gcttacgaac ctgtatgggc
    16501 aatcggtact ggcaaatctg caactccggc tcaggcacag gctgttcaca aattcatccg
    16561 tgaccacatc gctaaagttg acgctaacat cgctgaacaa gtgatcattc agtacggcgg
    16621 ctctgtaaac gcgtctaacg ctgcagaact gtttgctcag ccagacatcg acggcgcgct
    16681 ggttggcggt gcgtctctga aagctgacgc tttcgcagta atcgttaaag ctgcagaagc
    16741 ggctaaacag gcttaagtct gacaggtgcc ggatttcata tccggcactt actttcctta
    16801 actcttcgcc ttaacgcaaa atctcacact gatgatcctg aatttcctcg gctgaagcac
    16861 ggttaagcgt cagtagattt cgttgtgtcg ccagcaatac aaatgagtta tcactctgcc
    16921 gtaccatcgc cagcccgtag cttcccatat gttcccgcgc ctcaggtact tcttctgcca
    16981 gcatcataaa tgggctgcgt tgtaccagtt cgctttccgt tacccgacgc gccaggtatt
    17041 catgcccgcg caaaccacct ggcagtggca accagcggct gctgatgttc gccagattgt
    17101 tatccagttg ttcgcgcaca tcaggacgaa tacaagagat atgaatatga aaatggtttt
    17161 gcgtacgccc ggtgcgggag ttgatcgcca aagaaaccgc gcgatcggga accggctggc
    17221 cgtacttttt gctcataaaa tcacgcgcct gccaggccaa ccaaaagaag ttcggcgttg
    17281 aaggatcggt caacaaagga ctttcagtac cgttaatacg atacgttggc atcaacagat
    17341 attgcagtgg gccattaaga tcttttaaaa ccacgtatcc ggcattgggt ttgacttccg
    17401 cacatggcga aggattttga ttttgctgct gattgggcaa acattcctca aggacaatct
    17461 tacgtaatgt atccgactct tcaccggtta atttccagta accaataccg gcagccacaa
    17521 cggcgataac tatcatcacc aaaaaaagaa gacccgcttt tttcatcttt ttttccctgt
    17581 acctcaaaga gatgcaaggg taacgcaaaa tcgtgacaaa taaaaaaccc ggtcgcgaga
    17641 aaccaccggg tttgataatt atcctgggga aatcagcgtt tgctgatctg atcgaacgta
    17701 ccgccgttag caaaatgctc tttttgcgct ttcgtccagc cgccgaactc ttcatcaatg
    17761 gtgaataact tcagctttgg aaacgcattt tcgtactttt tcgctacttc agcgtcgcgc
    17821 ggacggtagt agtttttcgc ggcaatttcc tgaccttctg gcgagtagag atatttcagg
    17881 taggcttccg ccacctcttt ggtgcctttt ttctcgacca ctttatcgac caccgacacg
    17941 gttggctctg cgaggataga ctcactcggc gtgacgattt cgaatttatc tttccccagt
    18001 tcattcgctg ccagcagagc ttcgttttcc caggcgatca gtacatcgcc aatcccgcgc
    18061 tcgacaaagg tgttagtgga gccgcgcgcg ccagaatcca gaacttcgac gtttttatac
    18121 agtgcccgaa caaaatcctg tgcttttgcc tgatcgttgt tgttgtgatg cagcgcgtag
    18181 ccccaggcag ccaggtagtt ccagcgtgcg ccaccagagc ttttcggatt aggcgtgatc
    18241 accgaaacac ccggtttaat cagatcgttc cagtcatgga tctgcttcgg attgccctta
    18301 cgcaccagga aaacaatggt ggaagtgtac ggtgcggagt tatccggcag acgtttgatc
    18361 cactctttat caatccgccc gcgttccgca attgcgtcca cgtcataggc cagagccagc
    18421 gtgacaacat cagcttcaat accgttgatt accgacgtcg cttgtttacc tgaaccaccg
    18481 tgtgactgac gcatcaccac gttatcacca gtttgctgtt tccagtgggc gctgaatgcc
    18541 ttgttgtact gttcgtacaa ttcgcgcgtt ggatcatatg aaacgttaag aagctgaata
    18601 tcctttgcca taacgctggt tgccgccagc aaaaatgtta accctacgcc ccacttgttc
    18661 atcgcccgac tctcttatgt tgtgttgtga tgagcaaagc gtgccagaag gttaaccaaa
    18721 cattaaagaa taaaaaaaga ttggctataa cttgcgggta tatgttgagg gattaaaaag
    18781 gcggaagaaa tccgcctcat attgctgaca aagtgcgctt tgtccatgcc ggatgcggcg
    18841 cgaacgcctt atccggccta caaaagtttg caaattcaat aaattgcaga attcatgtag
    18901 gcctgataag cgaagcgcat caggcatttt tgcttctgtc atcggtttca ggctaaagga
    18961 atctgccttt ttccgaaatc attaatacag ttttttcgcg cagtccagcc agtcaccttt
    19021 gaacggacgc ttcatgtttt cgatagcgtc gatgatgtcg tggtgaacca gctgttcgtt
    19081 ctggatacct acacaacgac cgccgtaacc tgccagcagc agatcgatag cgtaagcgcc
    19141 catacgggaa gccagaatac ggtcgtaagg caccggagaa ccaccgcgct ggatgtggcc
    19201 cagcacagtt gcgcgggttt cacgacctgt ttctttctcg atgaaatgcg ccagttcgtc
    19261 aacatcacac atatgttcgg taatcgccac gatcgcgtgt tttttacctt tcgcgatacc
    19321 cgctttgatt tcgtttacca ggtcttcacg gctgaattca acttccggaa ccacaacgaa
    19381 ttcacagcca ccggcaatgg ccgcagccaa cgtcagatcg ccacaataac ggcccatcac
    19441 ttccaccacg gaaatacgct ggtgagaaga agaggtgtca cgcagacggt cgatcgcttc
    19501 tacaacggtg ctcagcgcag tgaagaaacc gatagtgtag tcagtgcctt tgatgtcgtt
    19561 gtcgatagtg cccggcagac cgatgcacgg gaagcccatt tcggtcagac gcattgcacc
    19621 catgtaggaa ccgtcaccgc cgataaccac cagcgcgtcg ataccacgtt ttttcaggtt
    19681 ttcgatagcc acggcgcgga tgttctcgtc gcggaattcc gggaaacgcg cagaaccgag
    19741 gaacgtaccg ccacggttga tcatgtcaga cacgctgtaa cggtctagct gtaccatacg
    19801 gtcttcatac agacccagat agccgtcata aatacccatt acttccagac cttctgtcag
    19861 cgcagaacga acaaccccgc gaattgcggc gttcatgcct ggcgcatcac cgccgcttgt
    19921 caacacaccg attttcttaa tcatgactac ctctgaactt tggaatgcaa aatgaaatct
    19981 gttgccggaa gtcttcttgc acatcgaagt gatccaacga atgtgcaaat agtataacaa
    20041 tcacttcctg ctgaattgat tcaggtcagg ccaaatggcg gtattttata cacaaaatgc
    20101 gggtctggct ctcttttata ctgattatga aagcatagac cgtttaccct ccctgggtac
    20161 gacggaacag gggtcctgat ggataattac atccgatccc ggaaaacgcc gtaaaatagc
    20221 ctgctctacc tgatccgcca ccatatgtgc ctgaaccaaa ggcagagagt cttccatttc
    20281 caaatgaatc tgaataaagc gggtcggccc tgactgccgc gtgcgaagat cgtgagcgcc
    20341 gctaacaccc ggccaggaag tcacgatatc aataatttct tgccgttcct catcaggcaa
    20401 tgcgcgatcc agtaatgact gtaccgcctc atatcccatg cgtaacgcgc tatataaaat
    20461 atagatgccg attcccaatg caaacagagc atcggcgcga tgccagccgt accaggacaa
    20521 ccccagcgcc agcagaattg cgccgttcat cataacatca gactggtaat gtagcatatc
    20581 agcccgcacc gcctggcttt gcgtccggcg caccacccaa cgctgaaacg agacaaggat
    20641 aatcgtacaa attagcgcca caattgtcac gataaccccg acgcctggat ctatcatcgg
    20701 tgttggagat atcagatgtt gaatacccgt caaaaacagg aatagtgccg aaccggagat
    20761 aaacatactt tgcgccagcg ccgcgaggga ctctgcttta ccgtgaccaa acgagtgatt
    20821 atcgtcggca ggttgcaggg aatatcgcac caccagtaaa ttcgtcaacg acgcgccgat
    20881 atccaccagc gaatccacca gcgcggcgag aatactcacc gacccggtat accaccatgc
    20941 aaaaatttta atcagcaata gcaacgaagc catcgccgtc gcagcaatcg ccgcccgact
    21001 gaccagccgt ccataagatt gattcataaa tactcccgct atcaactgac gctagtataa
    21061 cggaagcaaa tcatctgcaa tgcattaagc agcaggcaaa ttgaggataa aaaaaacccc
    21121 acatcatgtg ggggaagaca gggatggtgt ctatggcaag gaaaacaggg tttactactg
    21181 ggaacgtgag ttgctactac tcaatagctt caacgatgaa cttttttgcc attgcgtcac
    21241 gtcacgcaac tgctccattc gttgttgatg tttctcgttt aaaaccgctt gctgctccgg
    21301 cgttaacagg cgatacattt ggttgcggac ttttgccatc tcaacctgac gagcaatttg
    21361 ctcattcgcc attttttctg cctgtgcgcg cacagcgttt tcatcaaaat tttctgcggt
    21421 gacaaggcga tgcattgtct ccagttcgct aacattaaca ggaggctgtt cgtgccgggc
    21481 ctgttgcata agatctcgca tctgctgacg ctgatgttcg gttaaactta tgccgtcgaa
    21541 catatggctc tgcgtactgc gctgcgtaag ttcttcaccc ggatgccagt tatcgcctga
    21601 accgacttca gcagcgtggc ttaatgaact gactgccagc gttgaagcca tgacggcagc
    21661 ggtaactatg cgcatcattt gctcccaaaa tctttctgtc gcgattcaac gatagagagt
    21721 ttacgattca ggctgcaaac atgcgtcagg gggtgtaaaa caacgtaaag tcatggatta
    21781 gcgacgtctg atgacgtaat ttctgcctcg gaggtattta aacaatgaat aaaatcctgt
    21841 tagttgatga tgaccgagag ctgacttccc tattaaagga gctgctcgag atggaaggct
    21901 tcaacgtgat tgttgcccac gatggggaac aggcgcttga tcttctggac gacagcattg
    21961 atttactttt gcttgacgta atgatgccga agaaaaatgg tatcgacaca ttaaaagcac
    22021 ttcgccagac acaccagacg cctgtcatta tgttgacggc gcgcggcagt gaacttgatc
    22081 gcgttctcgg ccttgagctg ggcgcagatg actatctccc gaaaccgttt aatgatcgtg
    22141 agctggtggc acgtattcgc gcgatcctgc gccgttcgca ctggagcgag caacagcaaa
    22201 acaacgacaa cggttcaccg acactggaag ttgatgcctt agtgctgaat ccaggccgtc
    22261 aggaagccag cttcgacggg caaacgctgg agttaaccgg tactgagttt accctgctct
    22321 atttgctggc acagcatctg ggtcaggtgg tttcccgtga acatttaagc caggaagtgt
    22381 tgggcaaacg cctgacgcct ttcgaccgcg ctattgatat gcacatttcc aacctgcgtc
    22441 gtaaactgcc ggatcgtaaa gatggtcacc cgtggtttaa aaccttgcgt ggtcgcggct
    22501 atctgatggt ttctgcttca tgataggcag cttaaccgcg cgcatcttcg ccatcttctg
    22561 gctgacgctg gcgctggtgt tgatgttggt tttgatgtta cccaagctcg attcacgcca
    22621 gatgaccgag cttctggata gcgaacagcg tcaggggctg atgattgagc agcatgtcga
    22681 agcggagctg gcgaacgatc cgcccaacga tttaatgtgg tggcggcgtc tgttccgggc
    22741 gattgataag tgggcaccgc caggacagcg tttgttattg gtgaccaccg aaggccgcgt
    22801 gatcggcgct gaacgcagcg aaatgcagat cattcgtaac tttattggtc aggccgataa
    22861 cgccgatcat ccgcagaaga aaaagtatgg ccgcgtggaa ctggtcggtc cgttctccgt
    22921 gcgtgatggc gaagataatt accaacttta tctgattcgt ccggccagca gttctcaatc
    22981 cgatttcatt aacttactgt ttgaccgccc gctattactg ctgattgtca ccatgttggt
    23041 cagtacgccg ctgctgttgt ggttggcctg gagtctggca aaaccggcgc gtaagctgaa
    23101 aaacgctgcc gatgaagttg cccagggaaa cttacgccag cacccggaac tggaagcggg
    23161 gccacaggaa ttccttgccg caggtgccag ttttaaccag atggtcaccg cgctggagcg
    23221 catgatgacc tctcagcagc gtctgctttc tgatatctct cacgagctgc gcaccccgct
    23281 gacgcgtctg caactgggta cggcattact gcgccgtcgt agcggtgaaa gcaaggaact
    23341 ggagcgtatt gaaaccgaag cgcaacgtct ggacagcatg atcaacgatc tgttggtgat
    23401 gtcacgtaat cagcaaaaaa acgcgctggt tagcgaaacc atcaaagcca accagttgtg
    23461 gagtgaagtg ctggataacg cggcgttcga agccgagcaa atgggcaagt cgttgacagt
    23521 taacttcccg cctgggccgt ggccgctgta cggcaatccg aacgccctgg aaagtgcgct
    23581 ggaaaacatt gttcgtaatg ctctgcgtta ttcccatacg aagattgaag tgggctttgc
    23641 ggtagataaa gacggtatca ccattacggt ggacgacgat ggtcctggcg ttagcccgga
    23701 agatcgcgaa cagattttcc gtccgttcta tcggaccgat gaagcacgcg atcgtgaatc
    23761 tggcggtaca ggattggggc tggcgattgt tgaaaccgcc attcagcagc atcgtggctg
    23821 ggtgaaggca gaagacagcc cgctgggcgg tttacggctg gtgatttggt tgccgctgta
    23881 taagcggagt taaactccgc atttgtaggc aggataaggc gtttacgccg catccggcat
    23941 ttgagcagga tgcctgatgc gacgctgata gcgtcttatc aggcctacac tccgggggtt
    24001 attttcccca caaccggcgg gaaaaatctt cgatcttgcc gctcagtcgg cgcttttgca
    24061 tcgtccgcgt ccagcttttc gataacccgg cggcggagag taaacggtga tactgatcgt
    24121 catcaaacgg catatgccat gcgatggcgg cagcctcctg cacggtcaca tcgctgacac
    24181 gggaaaccaa ctccagcggc gcgtccgcag acactttccc tggcgctatc acgctataca
    24241 accaccccac cttacctgtg ttttgcatca actgcgctat atcgctgata tcaaaatggt
    24301 aattgagttt atagcaaggc gagcgcggct ggctgacctg aattaatgcc tctccccagc
    24361 ggaaaatatc gcccatataa acattacttt ccgtcaggcc gtcggttgag aggttttcac
    24421 caaacgcagg cgcaacaaac aactccgcct gttccggaaa ttcccgcgcc cagtagagat
    24481 aatgctcacg aggataatga cacagcgctc tgtctggccc accatgaacc tttttctccg
    24541 cctgctcgtc accttccagc cccagctccg tcagcatcaa ctcaccatca acctggattt
    24601 tggcaattgc gctgggtttg ccttcgggat aagcctgaat cttgcctgtg tatacatcaa
    24661 ccggatatcg catctgttcc ctctccacga gaaatttccc cattagacca tatttatttt
    24721 atgtcaggcg tgctgttttc gcggtaagta tccaggcagg aactcaatag caaaccggac
    24781 gaacgttagt tcatccggct gtggggatta aggaagcagg tttatttcac cgtacctaaa
    24841 atttcgattt tcgctgctct ggctttgact ttacgtgacc agatagaggt aagaattggc
    24901 accagaatcg aagtcacaat gaccgccgtc gctaccagcg aagttgctgc cggagccatc
    24961 ggtttaaacg caggcaccat ttctgcaatc agcataggtg tcgctaccgc ggcccctgcg
    25021 gaactggaag cggcaattcc ggcagtgcca tcgccaccgc caatcaattt atcggcgata
    25081 atcaacggaa caccggtcac gataattact gccacaccca acaggatccc cagcaaacca
    25141 gtctgggcaa tcacagtcaa atcaatggta ttgcccagcg cgaaggcaaa gaatggaatc
    25201 agcgtttgca ccgctttgct gaaaaattct cgtaattcag ggtcaaggtt ccccagggca
    25261 aagcccacca ggaacggtaa tactgcgccg acgaaaacat gcggttcaaa cgaggcaatc
    25321 cctgcagtgc ccagaataat catcgtcatg agcggcccgg actccaacga catcaacaca
    25381 aatgccccag cttcttcttt tgtgccgtac tgctgcatga tggaagcgta aagtccgcca
    25441 ttggtcatat ccatcgccgc caccagcgcc agcgttgaaa gtccggcaaa gaatccaact
    25501 tcaacaccat gttccggaat aatgcgcgag gcaattgccg caaccaccca cgcgacggca
    25561 atttttgtta ccaccagcgt accggattta cgcaataccg ttcccgtcgc gcttaatttt
    25621 attgacgccc ccatgcaaaa aaaccacacc gccagaatgg acaccgtacc ggtaatcatc
    25681 ccgttggtga atgatccaaa atatttcccc gcccccggcg agaaggtgtg gcacagtgcg
    25741 ccaaggaata gcgggacgag catcatcccc ccccgggatt ttctcaatcg agcgttttat
    25801 ctgcatttcc atcacctgtc ggcatatttt taagggctga tgcgtaattc ctcaatggag
    25861 catcagtgtt gatggaaacg aagatagaca ttcatttaat caataaaagt gatcaaaacc
    25921 acatcaattg aaacgctgtt ttatttttat cggatcattg tttttatttt gaaattgatc
    25981 acaaaaaaac caccgccgtt ggcgatggtt cattttttaa gctgatatgc ggcgtaaacg
    26041 cctcattgca gcaggcggca aatgattatt ttttcgccgc gaaacgtgcc gctgcttcat
    26101 cccagttcac cacgttccag aactctttga tgtagtccgg acggcggttc tggaatttca
    26161 ggtagtaagc atgttcccac acatccaggc ccagaatcgg gaagccggaa gcgccagaaa
    26221 tagcttcacc catcagcggg gaatcctggt tagcagtaga aaccaccgcc agtttatcgc
    26281 ctttcagcac cagccatgcc cagccggaac caaagcggga agctgccgct ttctcaaatt
    26341 ctgctttgaa gttatcaacg gagccgaagt cacgttcgat agccgctttc aggtcaccct
    26401 gtaaggtggt gccttttttc agacctttcc agaacaggct gtggttagcg tgaccgccag
    26461 cgttgttgcg cagtacggtt ttcttgtctg ctggcagctg gtccagtttg gtgatcagct
    26521 cttcaaccgg caggttggca aattctggca ggctttccag cgccgcgttg gcgttgttga
    26581 cgtaggtctg atggtgtttg gtgtggtgga tttccatggt ctgcttatcg aagtgcggtt
    26641 ccagggcatc gtaagcatac ggcagggatg gcagggtata gctcatattc atctccagta
    26701 ttgtcgggcg gccgattgtt aatgcgcgta agcagttggt tcattatagt taattaaatg
    26761 atattgaaaa tgattatcaa tgccgtactt ttcgtaaggg tatggttttg caggaaaatt
    26821 cccgagatgt gaagcaaatc acccacttaa tgccgtgatt gccagtaaat cgacaacggc
    26881 ggcaacaggc gaaaggttaa tcgacagcac gatttttaca ctcatctcgt cggagatgtg
    26941 acgcgacgaa aaatgatgag gataagaaga tgagtaacgc gattacgatg gggatatttt
    27001 ggcatttgat cggcgcggcc agtgcagcct gtttttacgc tccgttcaaa aaagtaaaaa
    27061 aatggtcatg ggaaaccatg tggtcagttg gtgggattgt ttcgtggatt attctgccgt
    27121 gggccatcag cgccctgtta ctgccgaatt tctgggcgta ttacagctcg tttagtctct
    27181 ctacgctgct gcctgttttt ctgttcggcg ctatgtgggg gatcggtaat atcaactacg
    27241 gcctgaccat gcgttatctc ggcatgtcga tgggaattgg catcgccatt ggcattacgt
    27301 tgattgtcgg tacgctgatg acgccaatta tcaacggcaa tttcgatgtt ctgcttaata
    27361 ccgaaggcgg acgcatgacg ttgctcggcg ttctggtggc gctgattggt gtagggattg
    27421 tgactcgcgc cgggcagttg aaagagcgca aaatgggcat taaagccgaa gagttcaacc
    27481 tgaaaaaagg gctggtgctg gcggtgatgt gcggcatttt ctctgccggt atgtcttttg
    27541 cgatgaacgc cgcaaaaccg atgcatgaag ccgctgccgc actgggcgtc gatccactgt
    27601 atgtcgctct gccaagctat gtcatcatca tgggcggcgg cgcgatcatc aacctcggtt
    27661 tctgcttcat tcgtctggca aaagtgaagg atttgtcgct aaaagccgac ttctcgctgg
    27721 caaaaccgct gatcattcac aatgtgttac tctcagcact gggcgggttg atgtggtatc
    27781 tgcaattctt tttctatgcc tggggccacg cccgcattcc ggcgcagtat gactacatca
    27841 gttggatgct gcatatgagt ttctatgtat tgtgcggcgg tatcgtcggg ctggtgctga
    27901 aagagtggaa caatgcaggt cgccgtccgg taacggtgtt gagcctcggt tgtgtggtga
    27961 ttattgtcgc cgccaacatc gtcggcatcg gcatggcgaa ttaatctttc tgcgaattga
    28021 gatgacgcca ctggctgggc gtcatcccgg tttcccgggt aaacaccacc gaaaaatagt
    28081 tactatcttc aaagccacat tcggtcgaaa tatcactgat taacaggcgg ctatgctgga
    28141 gaagatattg cgcatgacac actctgacct gccgcagata ttgattgatg gtcattccag
    28201 tctgctggcg aaattgctga cgcaaaacgc gctcactgca cgatgcctca tcacaaaatt
    28261 tatccagcgc aaagggactt ttcaggctag ccgccagccg ggtaatcagc ttatccagca
    28321 acgtttcgct ggatgttggc ggcaacgaat cactggtgta acgatggcga ttcagcaaca
    28381 tcaccaactg cccgaacagc aactcagcca tttcgttagc aaacgacaca tgctgactac
    28441 tttcatgctc aagctgaccg ataacctgcc gcgcctgcgc catccccacg ctacctaagc
    28501 gccagtgtgg ttgccctgcg ctggcgctaa atcccggaat cgctccctgc cagtcaagat
    28561 tcagcttcag ccgctccggg caataaataa tattctgcaa aaccagatcg ttaacggaag
    28621 cgtaggagtg tttatcgtca gcatgaatgt aaaagagatc gccacgggta atgcgataag
    28681 ggcgatcgtt gagtacatgc agaccattac cgcgccagac aatcaccagc tcacaaaaat
    28741 catgtgtatg ttcggcaaaa acatcttgcg gataacggtc agccacagcg actgcctgct
    28801 ggtcgctggc aaaaaaatca tctttgagaa gttttaactg atgcgccacc gtggctacct
    28861 cggccagaga acgaagttga ttattcgcaa tatggcgtac aaatacgttg agaagattcg
    28921 cgttattgca gaaagccatc ccgtccctgg cgaatatcac gcggtgacca gttaaactct
    28981 cggcgaaaaa gcgtcgaaaa gtggttactg tcgctgaatc cgcagcgata ggcgatgtca
    29041 gtaacgctgg cctcgctgtg acgtagcaga tgtcgggcct tcatcagtcg caggcggttc
    29101 aggtaacgct gaggcgtcag tcccgtttgc tgcttaagct gccgatgtag cgtacgcagt
    29161 gaaagagaaa attgatccgc cacggcatcc caattcacct catcggcaaa atggtcctcc
    29221 agccaggcca gaagcaagtt gagacgtgat gcgctgtttt ccaggttctc ctgcaaactg
    29281 cttttacgca gcaagagcag taattgcata aacaagatct cgcgactggc ggtcgagggt
    29341 aaatcatttt ccccttcctg ctgttccatc tgtgcaacca gctgtcgcac ctgctgcaat
    29401 acgctgtggt taacgcgcca gtgagacgga tactgcccat ccagttcttg tggcagcaac
    29461 tgattcagcc cggcgagaaa ctgaaatcga tccggcgagc gatacagcac attggtcaga
    29521 cacagattat cggtatgttc atacagatgc cgatcatgat cgcgtacgaa acagaccgtg
    29581 ccaccggtga tggtataggg ctgcccatta aacacatgaa tacccgtgcc atgttcgaca
    29641 atcacaattt catgaaaatc atgatgatgt tcaggaaaat ccgcctgcgg gagccggggt
    29701 tctatcgcca cggacgcgtt accagacgga aaaaaatcca cactatgtaa tacggtcata
    29761 ctggcctcct gatgtcgtca acacggcgaa atagtaatca cgaggtcagg ttcttacctt
    29821 aaattttcga cggaaaacca cgtaaaaaac gtcgattttt caagatacag cgtgaatttt
    29881 caggaaatgc ggtgagcatc acatcaccac aatgaagcaa attgtgaaca tcatcacgtt
    29941 catctttccc tggttgccaa tggcccattt tcctgtcagt aacgagaagg tcacgaattc
    30001 aggcgctttt tagactggtc gtaatgaaat tcagcaggat cacattatga cctttcgcaa
    30061 ttgtgtcgcc gtcgatctcg gcgcatccag tgggcgcgtg atgctggcgc gttacgagcg
    30121 tgaatgccgc agcctgacgc tgcgcgaaat ccatcgtttt aacaatggcc tgcatagcca
    30181 gaacggttat gtcacctgga atgtggatag cctggaaagt gccattcgcc ttggattaaa
    30241 caaggtgtgc gaggaaggga ttcgtatcga tagcattggg attgatacct ggggcgtgga
    30301 ctttgtgctg ctcgaccaac agggtcagcg tgtggacctg cccgttgctt atcgcgatag
    30361 ccgctccaat ggcctaatgg cgcaggcaca gcaacaactc ggcaaacgcg atatttatca
    30421 acgtagcggc atccagtttc tgcccttcaa tacgctttat caactgcgtg cgctgacgga
    30481 gcaacaacct gaacttattc cacacattgc tcacgctctg ctgatgccgg attacttcag
    30541 ctatcgcctg accggcaaga tgaactggga atataccaat gccaccacca cacaactggt
    30601 caatatcaat agcgacgact gggacgagtc gctactggcg tggagcgggg ccaacaaagc
    30661 ctggtttggt cgcccgacgc atccgggtaa tgtcattggg cactggattt gcccgcaggg
    30721 taatgagatt ccggtggtcg ccgttgccag ccatgatacc gccagcgcgg ttatcgcctc
    30781 gccgttaaac ggttcacgcg ctgcttatct ctcttctggc acctggtcat tgatgggctt
    30841 cgaaagccag acgccattta ccaatgacac ggcgctggca gccaacataa ccaatgaagg
    30901 cggggcggaa ggtcgctatc gggtgctgaa aaatattatg ggcttatggc tgcttcagcg
    30961 agtgcttcag gagcggcaaa tcaacgatct cccggcgctt atcgccgcga cacaggcact
    31021 tccggcctgc cgcttcatca tcaatcccaa tgacgatcgc tttattaatc ctgaggcgat
    31081 gtgcagcgaa attcaggctg cgtgtcggga aacggcgcaa ccgatcccgg aaagtgatgc
    31141 tgaactggcg cagctacgcg gtgaagattt ctcgcaactg catattgtcg gcggcggctg
    31201 ccagaacacg ctgctcaacc agctatgtgc cgatgcctgc ggtattcggg tgatcgccgg
    31261 gcctgttgaa gcctcgacgc tcggcaatat cggcatccag ttaatgacgc tggatgaact
    31321 caacaatgtg gatgatttcc gtcaggtcgt cagcaccacc gcgaatctga ccacctttac
    31381 ccctaatcct gacagtgaaa ttgcccacta tgtggcgcag cttcactcta cacgacagac
    31441 aaaggagctt tgcgcatgac cactcaactg gaacaggcct gggagctggc gaaacagcgt
    31501 ttcgcggcgg tggggattga tgtcgaggag gcgctgcgcc aacttgatcg tttacccgtt
    31561 tcaatgcact gctggcaggg cgatgatgtt tccggttttg aaaacccgga aggttcgctg
    31621 accgggggga ttcaggccac aggcaattat ccgggcaaag cgcgtaatgc cagtgagcta
    31681 cgtgccgatc tggaacaggc tatgcggctg attccggggc cgaaacggct taatttacat
    31741 gccatctatc tggaatcaga tacgccagtc tcgcgcgacc agatcaaacc agagcacttc
    31801 aaaaactggg gtgaatgggc gaaagccaat cagctcggtc tggattttaa cccctcctgc
    31861 ttttcgcatc cgctaagcgc cgatggcttt acgctctcgc atcccgacga cagcattcgc
    31921 cagttctgga ttgatcactg caaagccagc cgtcgcgttt cggcctattt tggcgagcaa
    31981 ctcggcacac catcggtgat gaacatctgg atcccggatg gtatgaaaga tatcaccgtt
    32041 gaccgtctcg ccccgcgtca gcgtctgctg gcagcactgg atgaggtgat cagcaagaag
    32101 ctaaaccctg cgcaccatat cgacgccgtt gagagcaaat tgtttggcat tggcgcagag
    32161 agctacacgg ttggctccaa tgagttttac atggggtatg ccaccagccg ccagactgcg
    32221 ctgtgcctag acgccgggca cttccacccg actgaagtga tttccgacaa gatttccgcc
    32281 gccatgctgt atgtgccgca gttgctgctg cacgtcagcc gtccggttcg ctgggactgc
    32341 gatcacgtag tgctgctgga tgatgaaacc caggcaattg ccagtgagat tgtgcgtcac
    32401 gatctgtttg accgggtgca tatcggcctt gacttcttcg atgcctctat caaccacatt
    32461 gccgcgtggg tcattggtac acgcaatatg aaaaaagccc tgctgcgtgc gttgctggaa
    32521 cctaccgctg agctgcgcaa gctggaagcg gcgggcgatt acactgcgcg tctggcactg
    32581 ctggaagagc agaaatcgtt gccgtggcag gcggtctggg aaatgtattg ccaacgtcac
    32641 gatacgccag caggtagcga atggctggag agcgtgcggg cttatgaaaa agaaattttg
    32701 agccagcgtg ggtaaacact gccggatgcg gcgcgagcgc cttatccggc ctacgggtcg
    32761 gcaacagttg taggcctgat aagacgcgac agcgtcgcat caggcattga ttgccggatg
    32821 cggcacgagt gccttatccg gcctacaggt cggcaatagt tgtaggcctg ataagacgcg
    32881 acagcgtcgc atcaggcatt gattgccgga tgcggcacga gcgccttatc cggcctacgg
    32941 gtcgtgcatc tgacaacacc gaatttacag gaacacagaa catgcaaaac attacccagt
    33001 cctggtttgt ccagggaatg atcaaagcca ccaccgatgc ctggctgaaa ggctgggacg
    33061 aacgcaacgg cggcaacctg acgctgcgcc tggatgacgc cgatatcgcg ccttataaag
    33121 acaacgtcca tgcacaaccg cgctatatcc cgctcagcca gcccatgcct ttactggcaa
    33181 atacaccgtt tattgtcacc ggctccggca aattcttccg taacgtccag ctcgatcctg
    33241 cagctaactt aggcgtcgta aaagtcgaca gcgatggcgc gggctaccat attctctggg
    33301 ggttaaccaa cgaagccgtc ccgacatccg aactcccggc gcactttctc tcccactgcg
    33361 agcgcattaa agccaccaac ggtaaagatc gggtgatcat gcactgccac gccaccaacc
    33421 tgatcgccct cacctatgta ctggaaaacg acaccgcggt ctttactcgc caactgtggg
    33481 aaggcagcac cgagtgtctg gtggtattcc cggatggcgt tggcattctg ccgtggatgg
    33541 tgcccggcac ggacgaaatc ggccaggcga ccgcacaaga gatgcaaaaa cattcgctgg
    33601 tgttgtggcc cttccacggc gtcttcggca gcgggtcgac gttggatgaa acattcggtt
    33661 taatcgacac cgcagaaaaa tcagcacaag tattagtgaa ggtttattcg atgggcggca
    33721 tgaaacagac catcagccgt gaagagttga tagcgctcgg caagcgcttc ggcgttacac
    33781 cactagccag tgcgctggcg ctgtaaggag caaacatgat ccgcaaagcc tttgtcatgc
    33841 aggttaaccc cgacgcccac gaagagtatc agcgtcggca taaccccatc tggccggaac
    33901 tggaagcagt gttgaaatct cacggtgcgc ataactacgc catttacctc gacaaagcgc
    33961 gtaatctgct gtttgccacg gtagagattg aatctgaaga acggtggaat gcggtagcca
    34021 gtactgatgt ttgccaacgt tggtggaaat atatgaccga tgttatgccc gctaacccgg
    34081 ataacagccc ggtgagtagc gagctgc
//
LOCUS       DAJVUP010000026        32956 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.026, whole genome shotgun sequence.
ACCESSION   DAJVUP010000026 DAJVUP010000000
VERSION     DAJVUP010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32956
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.026"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..257
                     /locus_tag="OQQ75_001161"
     CDS             <1..257
                     /locus_tag="OQQ75_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HCS1975561.1"
                     /translation="LDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVV
                     MTPGWDNANGVTGWARNCNIQSDSALQQACEDVFRFDDAN"
     gene            267..1641
                     /gene="gspE"
                     /locus_tag="OQQ75_001162"
                     /pseudo
     CDS             267..1641
                     /gene="gspE"
                     /locus_tag="OQQ75_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414649.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
     gene            1631..2833
                     /gene="hofC"
                     /locus_tag="OQQ75_001163"
     CDS             1631..2833
                     /gene="hofC"
                     /locus_tag="OQQ75_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein transport protein HofC"
                     /protein_id="HCS1975562.1"
                     /translation="MASKQLWRWHGITGDGNAQDGMLWAESRALLLMALQQQMVTPLS
                     LKRIAINSAQWRGDKSAKVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAH
                     DLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK
                     SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSW
                     LLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA
                     GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGHPIWLALKNTGEFSPLCLQLVRTG
                     EASGSLDLMLDNLAHHHRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL
                     GDAMSGMG"
     gene            complement(2868..3911)
                     /gene="guaC"
                     /locus_tag="OQQ75_001164"
     CDS             complement(2868..3911)
                     /gene="guaC"
                     /locus_tag="OQQ75_001164"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HCS1975563.1"
                     /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSDQSW
                     SGVPIIAANMDTVGTFSMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVS
                     TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV
                     TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
                     DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK
                     RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFI
                     RVQEQENRIFNNL"
     gene            complement(4067..4111)
                     /locus_tag="OQQ75_001165"
     CDS             complement(4067..4111)
                     /locus_tag="OQQ75_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975564.1"
                     /translation="MIIKTLKMSARKRN"
     gene            4136..4756
                     /gene="coaE"
                     /locus_tag="OQQ75_001166"
     CDS             4136..4756
                     /gene="coaE"
                     /locus_tag="OQQ75_001166"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HCS1975565.1"
                     /translation="MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA
                     PALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ
                     ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA
                     TREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP"
     gene            4756..5499
                     /gene="zapD"
                     /locus_tag="OQQ75_001167"
     CDS             4756..5499
                     /gene="zapD"
                     /locus_tag="OQQ75_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HCS1975566.1"
                     /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF
                     RNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVL
                     ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS
                     LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH
                     KSRFAIRFMPLDSENGQVPERLDFELACC"
     gene            5509..5706
                     /gene="yacG"
                     /locus_tag="OQQ75_001168"
     CDS             5509..5706
                     /gene="yacG"
                     /locus_tag="OQQ75_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HCS1975567.1"
                     /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE
                     KRIPSSGDLSESDDWSEEPKQ"
     gene            complement(5813..6202)
                     /gene="mutT"
                     /locus_tag="OQQ75_001169"
     CDS             complement(5813..6202)
                     /gene="mutT"
                     /locus_tag="OQQ75_001169"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HCS1975568.1"
                     /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE
                     TPEQAVVRELQEEVGITPQHFSLFEKLAYEFPDRHITLWFWLVESWEGVPWGKEGQPG
                     EWMSLVGLNADDFPPANEPVIAKLKRL"
     gene            complement(6262..8967)
                     /gene="secA"
                     /locus_tag="OQQ75_001170"
     CDS             complement(6262..8967)
                     /gene="secA"
                     /locus_tag="OQQ75_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HCS1975569.1"
                     /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK
                     GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM
                     RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG
                     MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
                     ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE
                     RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
                     IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG
                     TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ
                     PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG
                     RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
                     KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED
                     VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERIL
                     AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
                     PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ
                     LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ"
     gene            complement(9029..9541)
                     /gene="secM"
                     /locus_tag="OQQ75_001171"
     CDS             complement(9029..9541)
                     /gene="secM"
                     /locus_tag="OQQ75_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414639.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secA regulator SecM"
                     /protein_id="HCS1975570.1"
                     /translation="MSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALSNAAEPNVPA
                     KATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQYAIRTVIRHLSFAMAPQTL
                     PVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVWISQAQ
                     GIRAGPQRLT"
     gene            complement(9772..10689)
                     /gene="lpxC"
                     /locus_tag="OQQ75_001172"
     CDS             complement(9772..10689)
                     /gene="lpxC"
                     /locus_tag="OQQ75_001172"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HCS1975571.1"
                     /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
                     NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
                     IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
                     FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
                     DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVL
                     AKQEAWEYVTFQDDAELPLTFKAPSAVLA"
     gene            complement(10790..11941)
                     /gene="ftsZ"
                     /locus_tag="OQQ75_001173"
     CDS             complement(10790..11941)
                     /gene="ftsZ"
                     /locus_tag="OQQ75_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HCS1975572.1"
                     /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
                     DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA
                     GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
                     ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
                     EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
                     TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
                     VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFLRKQAD"
     gene            complement(12002..13264)
                     /gene="ftsA"
                     /locus_tag="OQQ75_001174"
     CDS             complement(12002..13264)
                     /gene="ftsA"
                     /locus_tag="OQQ75_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HCS1975573.1"
                     /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
                     GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
                     EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
                     ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI
                     AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
                     VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL
                     TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
                     GEAEVEKRVTASVGSWIKRLNSWLRKEF"
     gene            complement(13261..14091)
                     /gene="ftsQ"
                     /locus_tag="OQQ75_001175"
     CDS             complement(13261..14091)
                     /gene="ftsQ"
                     /locus_tag="OQQ75_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ"
                     /protein_id="HCS1975574.1"
                     /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV
                     VLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR
                     LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPML
                     YGPEGSANEVLQGYREMGQMLAKDRFTLKETAMTARRSWQLTLNNDIKLNLGRGDTMK
                     RLARFVELYPVLQQLAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ
                     "
     gene            complement(14093..15013)
                     /gene="ddlB"
                     /locus_tag="OQQ75_001176"
     CDS             complement(14093..15013)
                     /gene="ddlB"
                     /locus_tag="OQQ75_001176"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1975575.1"
                     /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE
                     VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL
                     LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE
                     NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS
                     DETQYFCPAGLDASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG
                     MTSHSLVPMAARQAGMSFSQLVVRILELAD"
     gene            complement(15006..16481)
                     /gene="murC"
                     /locus_tag="OQQ75_001177"
     CDS             complement(15006..16481)
                     /gene="murC"
                     /locus_tag="OQQ75_001177"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HCS1975576.1"
                     /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
                     QISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
                     IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
                     VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL
                     HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
                     QDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEF
                     PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD
                     DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEML
                     APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD"
     gene            complement(16535..17602)
                     /gene="murG"
                     /locus_tag="OQQ75_001178"
     CDS             complement(16535..17602)
                     /gene="murG"
                     /locus_tag="OQQ75_001178"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HCS1975577.1"
                     /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR
                     MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGM
                     GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN
                     PVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS
                     GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA
                     LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR
                     AASIPDATERVANEVSRAARA"
     gene            complement(17599..18843)
                     /gene="ftsW"
                     /locus_tag="OQQ75_001179"
     CDS             complement(17599..18843)
                     /gene="ftsW"
                     /locus_tag="OQQ75_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HCS1975578.1"
                     /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY
                     DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL
                     PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYI
                     ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVVFVTTLAMLFLAGAK
                     LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL
                     WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL
                     EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
                     MLLRIDYETRLEKAQAFVRGSR"
     gene            complement(18843..20159)
                     /gene="murD"
                     /locus_tag="OQQ75_001180"
     CDS             complement(18843..20159)
                     /gene="murD"
                     /locus_tag="OQQ75_001180"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HCS1975579.1"
                     /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL
                     DKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCRE
                     AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAECELYVLELS
                     SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT
                     MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
                     LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL
                     QVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME
                     QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG"
     gene            complement(20162..21244)
                     /gene="mraY"
                     /locus_tag="OQQ75_001181"
     CDS             complement(20162..21244)
                     /gene="mraY"
                     /locus_tag="OQQ75_001181"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HCS1975580.1"
                     /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
                     IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
                     VVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL
                     VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA
                     TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
                     LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
                     EPRVIVRFWIISLMLVLIGLATLKVR"
     gene            complement(21238..22596)
                     /gene="murF"
                     /locus_tag="OQQ75_001182"
     CDS             complement(21238..22596)
                     /gene="murF"
                     /locus_tag="OQQ75_001182"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HCS1975581.1"
                     /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK
                     GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV
                     VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG
                     ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN
                     ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP
                     LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN
                     ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK
                     QSHAISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQENG
                     TC"
     gene            complement(22593..24080)
                     /gene="murE"
                     /locus_tag="OQQ75_001183"
     CDS             complement(22593..24080)
                     /gene="murE"
                     /locus_tag="OQQ75_001183"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HCS1975582.1"
                     /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH
                     QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY
                     HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
                     SAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
                     EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKV
                     IDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAA
                     RLQPVCGRMEVFTVPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
                     GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC
                     AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA"
     gene            complement(24067..25833)
                     /gene="ftsI"
                     /locus_tag="OQQ75_001184"
     CDS             complement(24067..25833)
                     /gene="ftsI"
                     /locus_tag="OQQ75_001184"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HCS1975583.1"
                     /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
                     LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
                     GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
                     LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
                     EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
                     NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
                     RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
                     LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
                     PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
                     NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
                     ALTTGDKNEFVINQGEGTGGRS"
     gene            complement(25849..26214)
                     /gene="ftsL"
                     /locus_tag="OQQ75_001185"
     CDS             complement(25849..26214)
                     /gene="ftsL"
                     /locus_tag="OQQ75_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HCS1975584.1"
                     /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI
                     CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
                     EKLQMQHVDPSQENIVVQK"
     gene            complement(26211..27152)
                     /gene="rsmH"
                     /locus_tag="OQQ75_001186"
     CDS             complement(26211..27152)
                     /gene="rsmH"
                     /locus_tag="OQQ75_001186"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HCS1975585.1"
                     /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
                     LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL
                     GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF
                     AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
                     IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL
                     GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA"
     gene            complement(27154..27612)
                     /gene="mraZ"
                     /locus_tag="OQQ75_001187"
     CDS             complement(27154..27612)
                     /gene="mraZ"
                     /locus_tag="OQQ75_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HCS1975586.1"
                     /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPC
                     LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
                     GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL"
     gene            complement(28214..29218)
                     /gene="cra"
                     /locus_tag="OQQ75_001188"
     CDS             complement(28214..29218)
                     /gene="cra"
                     /locus_tag="OQQ75_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite repressor/activator"
                     /protein_id="HCS1975587.1"
                     /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
                     HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
                     PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANAPFPIVALDRALDREHFTSVV
                     GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN
                     SYEREAAAQLFEKWLETHLMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN
                     ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
                     "
     gene            complement(29300..29386)
                     /locus_tag="OQQ75_001189"
     CDS             complement(29300..29386)
                     /locus_tag="OQQ75_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fruR/shl operon leader peptide"
                     /protein_id="HCS1975588.1"
                     /translation="MCNLQPNMSRWAFFAKSVGTWNKSSCRS"
     gene            complement(29398..29889)
                     /gene="ilvN"
                     /locus_tag="OQQ75_001190"
     CDS             complement(29398..29889)
                     /gene="ilvN"
                     /locus_tag="OQQ75_001190"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1975589.1"
                     /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS
                     RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK
                     RNTEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDK
                     IMR"
     gene            complement(29892..31616)
                     /gene="ilvI"
                     /locus_tag="OQQ75_001191"
     CDS             complement(29892..31616)
                     /gene="ilvI"
                     /locus_tag="OQQ75_001191"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HCS1975590.1"
                     /translation="MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGID
                     HVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQ
                     VATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVD
                     LPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVVAKKPVVYVGGGAI
                     MAGCHQQLKETVEALNLPVVSSLMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVI
                     FAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLEL
                     LSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVT
                     SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGS
                     IQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLA
                     EAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEM
                     WLSKTERT"
     gene            31735..31779
                     /locus_tag="OQQ75_001192"
     CDS             31735..31779
                     /locus_tag="OQQ75_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975591.1"
                     /translation="MKRNDKILHYEGLN"
     gene            complement(31934..32878)
                     /gene="leuO"
                     /locus_tag="OQQ75_001193"
     CDS             complement(31934..32878)
                     /gene="leuO"
                     /locus_tag="OQQ75_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LeuO"
                     /protein_id="HCS1975592.1"
                     /translation="MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAH
                     VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG
                     SGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ
                     ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDR
                     FASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVL
                     PLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR"
BASE COUNT         7913 a         9256 c         8017 g         7770 t
ORIGIN      
        1 gattagatac ctgcgacggt ggcagcaatg gcattccctc gcctaccacc acccgctatg
       61 tttcagccat gagtgtggca aaaggcgtgg tgtcgctgac cgggcaagaa agtctcaatg
      121 gactaagcgt cgtcatgacg ccaggttggg ataacgcaaa cggcgtcacc ggctgggcgc
      181 gcaactgcaa tattcaaagt gacagcgcat tgcagcaagc ctgcgaagat gtcttccgct
      241 ttgatgacgc caactaagga gcggcaatga atattccaca gctcaccgcc ctgtgtctgc
      301 gttatcaggg agtcttgctg gatgccagcg aagaggtggt tcatgttgcg gtagtcgatg
      361 caccttcgca tgagttgctg gacgcattgc atttcgctac caccaaacgt attgagatca
      421 cctgctggac gcgccaacaa atggaaggcc acgccagtcg cacacaacag acattgcccg
      481 tagctgttca ggagaagcat cagtcgaaag cagagttgct gactcgaacg ttacaatctg
      541 cgctggaaca acgtgcgtct gatattcata tcgaaccagc ggacaatgcc taccgcatcc
      601 gcttgcgtat cgacggcgta ttgcatcctt taccggatgt ttcaccggat gccggagtcg
      661 cattaaccgc cagattaaaa gtgctgggaa acctggatat tgcggaacat cgcctgccgc
      721 aggacgggca attcactgtc gaactggcag gaaacgccgt ctcatttcgt attgcgacct
      781 taccatgtcg gggtggtgaa aaggtggtat taaggttgtt acagcaggtg aaccaggcac
      841 tggatgttaa cacgctggga atgcagccgt tacaactggc ggactttgct catgccttgc
      901 aacaaccaca gggactggtg ctggtaactg gccctacagg cagcggcaaa acggtcacgc
      961 tttatagtgc cctgcaaaag ctgaataccg ctgacattaa tatttgtagc gtcgaagatc
     1021 cggttgagat ccccatagcc ggactaaacc agacgcaaat ccatccgcgt gccgggctca
     1081 cctttcaggg cgttttgcgt gcgttattgc gccaggatcc tgacgtcatc atgatccgat
     1141 ggcgaaacgg cagaaattgc cattaaagcc gcgcaaaccg gtcacctggt gttgtctacc
     1201 ctacacacta attccacctg cgaaacgctg gtacgtttac agcaaatggg agtcgcccgc
     1261 tggatgctct catcagcgct tacgctggta atagcccagc gtctggtacg taaattttgc
     1321 ccacattgtc gccagcagca aggggagccc atccatattc cagacaatgt atggccgtcg
     1381 ccgctgcccc actggcaggc acccggttgt gtacattgct accacggttt ttatggtcgt
     1441 accgccttgt ttgaagtcct gcccattaca ccagccatac gccagcttat ttccgctaat
     1501 accgacgttg aatcgctgga aacgcacgca cgacaggcgg gtatgcgtac gctttttgaa
     1561 aacggctgcc tagccgtgga gcaaggctta accacctttg aagagttaat ccgcgtactg
     1621 gggatgccgc atggcgagta agcaactctg gcgctggcat ggcataaccg gcgacggcaa
     1681 tgcgcaagat gggatgctat gggcagagag ccgtgctttg ctgctcatgg cactacagca
     1741 acagatggtt accccactta gcctgaagcg aatcgccatc aattctgcgc agtggcgagg
     1801 agataaaagc gcgaaagtca ttcatcaact ggcgacgcta ctcaaagccg ggttaacgct
     1861 ttctgaaggg ctggcactgc tggcgggaca gcatcccagt aagcaatggc aagcgttgct
     1921 gcaatcgctg gcgcacgatc tcgaacaggg cattgctttt tccaatgcct tattaccctg
     1981 gtcagaggta tttccgccac tctatcaggc gatgatccgc acgggtgaac tgaccggtaa
     2041 gctggatgaa tgctgctttg aactggcgcg tcagcaaaaa gcccagcgtc agttgaccga
     2101 caaagtgaaa tcagcgttac gttatcccat catcatttta gcgatggcaa tcatggtggt
     2161 tgtggcaatg ctgcattttg ttctgccgga gtttgccgct atctataaga ccttcaacac
     2221 cccactaccg gcactaacgc aggggatcat gacgctggca gactttagtg gcgaatggag
     2281 ctggctgctg gtgttgttcg gctttctgct ggcgatagcc aataagttgc tgatgcgccg
     2341 accgacctgg cttatagtgc ggcagaaatt gctgttacgc atcccgatta tgggttcact
     2401 gatgcgggga caaaaactca cgcagatctt tacgattctg gcgctgacac aaagtgcagg
     2461 cattactttt ttgcagggcg tagagagcgt cagagaaaca atgcgctgcc cgtactgggt
     2521 gcaacttctg acacaaatcc agcacgatat cagtaacggt catcccatct ggctggcgct
     2581 aaaaaatacc ggggagttta gcccgctctg tttgcaatta gtgagaacag gagaggcatc
     2641 cggctcgctg gacctcatgt tagacaacct cgcccatcat catcgggata acacaatggc
     2701 gctggcggat aacctcgcag ccttactgga accggcgttg ctgatcataa cgggaggaat
     2761 tatcggtacg ctggtggtgg cgatgtatct gccaattttc catttaggcg atgcgatgag
     2821 tgggatggga taacgctggc gtgttgctcc acaccagcgt tggaagatta caggttgttg
     2881 aagatgcggt tttcttgttc ctgcacacgg ataaatgtgg tgcgcttggt cagttctttc
     2941 aggcgtgaag ccccaacgta tgtacaagct gaacgcaggc cgcccaaaat atcacgcgcg
     3001 gtattttcaa ccgggcctcg cagcggcagc ttaacggttt taccttctgc tgcgcgatat
     3061 tccgcaacgc cgccaacgtg acgtttcatc gcagactcgg agctcatgcc gtagaacagc
     3121 ataaatttct cgccgttctc ctcaacgatg cgaccgccgc tctcttcgtg gcccgccagc
     3181 atgccgccaa gcatgacgaa atcggcaccg ccgccaaagg cttttgcgac atcgcccggc
     3241 gtggtgcagc caccgtcgct gacgatcatt ccgcccagac cgtgcgccgc atcggcacat
     3301 tcgattaccg cagaaagctg cggataaccg acgcctgttt tgacgcgagt tgtacaaaca
     3361 gaacctgggc caatgccaac tttaacgata tcagcaccgg agaggataag ctcctcacac
     3421 atttcaccag tcactacgtt gccagcacaa atggttttgg tcggccacgc ttcacgcgct
     3481 ttcgcaacga actgcacgaa gtgttcggaa taaccattcg ccacatcaat acaaacaaag
     3541 tttaatgccg ggttcaggtc gagaatctgt ttagtttttt cgaaatccgc atcagacgta
     3601 ccggtagaaa ccatcacatg tttcagcaca tcagcggaag aattgttgat aaacgcttgc
     3661 cactcttcga cagaatagtg tttatgcaca gcagtcaaaa tatcaaaaga agccagcgca
     3721 gaggccatag aaaatgtacc tacggtgtcc atatttgcgg cgataatcgg cacgccggac
     3781 cagctctgat ctgaatgttt gaaggtgaat tgacgttcca gttcaacatc ggaacggctt
     3841 ttaagagtgg agcgtttagg gcggatgaga acgtctttaa aacctaactt cagatcttct
     3901 tcaatacgca tgtgcggatt cctggggtta atggctataa gggtaagagc gcaactccag
     3961 tgacgctatc atacgcacta atcaatgcgg cgcaagactg cgaaattgtc tttttttacg
     4021 ctacaatccc ataaatttac ctggtaaata gtgagcgaac gtttcatcaa tttcgctttc
     4081 gtgcactcat ttttaacgtt ttgataatca tgatgaattc ccgggaatat aaattatgag
     4141 gtatatagtt gccttaacgg gaggcattgg cagtggcaag agtaccgttg ccaatgcgtt
     4201 tgctgatctc ggaattaacg tcattgatgc cgatattatt gcgcgtcagg tggttgaacc
     4261 aggtgcacct gcgctacatg ccattgctga tcactttggc gctaacatga ttgctgctga
     4321 tggaacattg cagcgccggg ccttgcgcga gcggatcttc gccaacccgg aagagaaaaa
     4381 ctggcttaac gccctgctgc atccgctgat tcagcaagag acgcaacacc agatccagca
     4441 agctacttcc ccctatgtac tgtgggttgt gccattgctg gtagaaaact cactgtataa
     4501 aaaagcgaat cgagtgctgg tggtggatgt cagcccagaa acgcaactta agcgcaccat
     4561 gcagcgcgat gatgtaactc gcgagcatgt cgaacaaatc cttgctgctc aggcaacgcg
     4621 cgaagcccgc cttgccgtgg cagatgacgt cattgataat aacggcgcac cggatgctat
     4681 cgcatcggat gttgcccgcc tgcacgcaca ctatttgcag cttgcgtcgc agtttgtctc
     4741 acaggaaaaa ccgtaatgca gacccaggtc ctttttgaac atccactaaa tgaaaaaatg
     4801 cgtacatggc tgcgcattga gtttttgatt cagcaactca ccgttaattt acccatcgtt
     4861 gaccacgctg gcgcgctgca tttcttccgt aatgtcagtg aattactgga tgttttcgag
     4921 cgcggcgaag tccgcactga gctgttgaaa gaacttgacc ggcagcaacg taaactccag
     4981 acctggattg gcgtgcctgg cgtggaccag agccgtattg aagcattaat tcagcagtta
     5041 aaagcggcgg ggagcgtatt aatttccgcg ccgcgtatcg ggcaatttct gcgtgaagat
     5101 cgtttgattg ctctggtgcg tcagcgactg agcatcccag gcggctgttg cagctttgat
     5161 ttacctacat tgcacatttg gctgcatcta ccccaggcgc agcgcgacag ccaggtagaa
     5221 acctggattg ccagcctgaa cccgctcacc caggcactta ccatggtgct ggatttaatt
     5281 cgccagtcgg cccccttccg taaacaaacc agcctgaatg gtttttatca ggataacggt
     5341 ggcgatgccg acttgctgcg cctgaatctg tcgctcgatt cacagcttta tccgcaaatt
     5401 tccggacata agagccgttt tgccattcgt tttatgccgc tggacagtga aaacggacag
     5461 gtaccggaac gtctagattt cgaactggcc tgttgctaag gagtgaaaat gtcagaaact
     5521 attacggtga attgcccaac ctgcgggaaa acggtggtat ggggtgaaat cagcccgttt
     5581 cggccatttt gctccaaacg ttgtcagctg atcgacctcg gagaatgggc tgctgaagaa
     5641 aaacgaatcc ccagcagtgg cgatctttcc gaaagcgatg actggagcga agagccaaag
     5701 cagtgacatt ggtctgatgc cgcacatagg cctgataaga cgcggacagc gtcgcatcag
     5761 gcatcttgtg caaatgtcgg atgcggcgtg aacgccttat ccgacctaca gactacagac
     5821 gcttaagctt cgcaattacc ggttcattgg ctggcggaaa atcatcggca ttaagaccga
     5881 ccagcgacat ccactcaccg ggttgccctt ctttacccca cggcacccct tcccaacttt
     5941 cgaccagcca gaaccacaga gttatatgcc tgtccgggaa ttcatatgcc agtttttcaa
     6001 atagcgaaaa atgttgtggg gtaatcccga cctcttcctg aagttcacgc accaccgcct
     6061 gttccggcgt ttcgcccatt tcaattttac cgccgggaaa ctccagttta ttcgccatgt
     6121 gcgcatctgc tgcgcgacgc gttataaaga tttcattgtt ctcgttgcga ataataccta
     6181 ccgcaatttg cagctttttc attgttttaa acctataaaa aaggcgcaga atcctgcgcc
     6241 ttttgcttca acagttagct tttattgcag gcggccatga cactgcttgt attttttacc
     6301 agaaccgcac gggcaaggat cgttacgtcc tactttgcgc tcaccggttt gcgccgccag
     6361 tgcagctgcg gctgcagagt cgtcatcctg atggctaagc tgctgcattt gcgctaaacg
     6421 ctcggcttcc atacgacgct gttgttccag ctcctcaacc tcttcaggca tacgtacctg
     6481 aactttgctc agcgtactga taacttcata tttcaacgac tccagcatcg ctgcaaacat
     6541 ggagaacgat tcacgtttgt attcctgctt cggatctttc tgtgcatagc cacgcaggtg
     6601 gataccctga cgcagatagt ccatcgctgc caggtgctct ttccacaggg agtcaagcgt
     6661 ttgcagcatg acgcctttct cgaagtgacg catcatctca gcaccaacca cttcttcttt
     6721 acgctgatac acttcgatgg actgcgccag aatgcgctca cgcagcgtct cttcatgcag
     6781 ttctggttct ttatccagcc actcggcaat tggtaaatcg aggtcgaaat cgttcttcag
     6841 acgttcctgc agccccggaa tatcccacat ttcttccagc gactgtggcg gaatgtaggc
     6901 atcaatggtg gctttgaaca catcttcacg aatgctgttg atggtttcgc tcacatcgct
     6961 gacatccagc agttcgttac gctgggagta aatggcgcga cgctgatcgt tagccacgtc
     7021 atcatattcc agcagttgct tacgaatgtc gaagttacga ctttcaactt tacgctgggc
     7081 gttggcaatc gctttagtca cccacgggtg ttcaatggct tcgcctggct tcatacccag
     7141 tttacgcatc atgccggata ctcggtcgga agcaaaaata cgcatcagcg catcttccat
     7201 cgacaggtag aaacgggaag aaccagcatc cccctgacga ccagaacgac cgcgcaactg
     7261 gttatcgata cgacgggatt cgtgacgctc ggtaccgatg atatgcaggc cacctgcttc
     7321 cagtaccgca tcgtgacgta cctgccagtc ggctttaatt ttttcaattt gctctgcggt
     7381 cggattttcc agcgcggcaa cttctgcctg ccagctacca ccgagcacaa tatctgtacc
     7441 acgacccgcc atattggtcg cgatagtcac cgcagccgga taaccagcct gagcaacaat
     7501 cgccgcttcg ttggcgtgga atttggcgtt caggacgttg tgcttaatac cggctttggt
     7561 cagttcgttt gacaccagct ccgatttttc gatggagata gtacccacca gcaccggctg
     7621 gcctttcgca gtacgttctt tgatatcttc aatgatcgcc tgaatttttt ccgcttcagt
     7681 catgtagacc aggtccggca gatctttacg aatcattgga cggttggtcg gaacaacgac
     7741 ggtatccagc ttgtagatgg agctaaattc gaaagcttcg gtatcagcag taccggtcat
     7801 ccccgccagt ttttcataca gacggaagta gttctggaag gtgatcgaag ccagcgtttg
     7861 gttttcgttc tggatctgca caccttcttt cgcttccaca gcctggtgca gaccatcgga
     7921 ccagcgacgg ccctgcatgg tacgaccggt gtgttcgtca acgatgataa cttcaccatc
     7981 tttaacgatg tagtcgacgt cgcgggtaaa cagcgcatga gcgcgcagcg ccgccgttac
     8041 gtggtgcatc agcatgatgt tggccggaga gtacagagac tccccttcat ccatgatgcc
     8101 ctctttcacc agcagttctt caatcagcac cagaccacgt tcggtcaggt tcacctggcg
     8161 agatttttcg tccaccgaga agtggccttc gccctggaag gtttcggagt cttctttttc
     8221 ctgacggatc aggtgcggaa taattttatt cacgcgttta tacatttccg agctgtcttc
     8281 tgccgggccg gaaatgatca gcggtgtacg cgcttcatcg atcaggatgg agtccacttc
     8341 gtccaccagc gcatagtgca gtttacgctg tacacgttct tcagggctga acgccatatt
     8401 gtcgcgcagg tagtcaaagc cgtattcgtt gttcgtaccg taagtgatgt cagctgcgta
     8461 agcttcgcgc tttgccggtg ctggcatgcc cggcaggttg ataccgacag tcaggccaag
     8521 gaattcaaac agcggacggt tgttttcggc gtcacgttgc gccaggtagt cgttgacggt
     8581 aactacgtgc acgcctttac cggttagtgc gttcaggtaa gcaggcagcg ttgcggtcag
     8641 ggttttacct tcaccggtac gcatttcggc gatgcagcgt tcgttaagaa ccataccgcc
     8701 gagtaactga acgtcgaagt gacgcatacc aaagacgcgc ttacttgcct cacgtaccac
     8761 ggcgaaagct tccgggatca gattttccag cacttcgcct ttttccagac gtgcacgaaa
     8821 ctctgcggtt ttccctttca gttcttcgtc ggagagtttt tccatctccg gttccatggc
     8881 attgatgatg ttgaccactt tgcgcatccg gcgcagggtg cgatcgttac gactaccgaa
     8941 aactttagtt aacaatttga ttagcataat aaaatctcaa acgccccgcg ttgcggagtt
     9001 aataaaatga agtaaaggtt tattgttgtt aggtgaggcg ttgagggcca gcacggatgc
     9061 cttgcgcctg gcttatccag acgggcgtgc tgaattttgc ttgtggggta aaatgcgcat
     9121 aatcaatgcg ataacccttt tcagacggcg tgccttcctg ggtcagcagc gcgctgagcg
     9181 tatccagtaa tgcaagatgt tgcgcctgaa gaggcaaaga ttcttcagca acgggcagtg
     9241 tttgcggtgc cattgcgaaa gaaagatgac ggattaccgt gcgaatggca tattgatgcc
     9301 agtaatcaac ggaatagttc gaattcgggc ggcgtgtgtt cgcttccagc aaggccaatt
     9361 gaccaaagtt aactttggct gaaggctcgt ggttgcgggt tgtcgctttt gcgggcacgt
     9421 ttggttcggc ggcgttgctg agcgcaggca aacctaaact cgccgcgacc atccctaata
     9481 agagatgcgg ccagaagtag cgtttaccaa actgtcgcca gcgcgtcagt attccactca
     9541 cgttattgcc atcccgatcg aattcaaacg tatttagcgc acaaatctta tcattaaagc
     9601 ctgaagtcca cagcatgaat gaagataagt tgtgcgtaaa agtgcttaag aaaacagcgt
     9661 tcgcaccgtt ttttatagct cttataaaat tcaaaaaaaa acgactggtt cacctggccg
     9721 gagagagtgc cagatttgcc agtcgaattt tatacgacag tataaatgtc gttatgccag
     9781 tacagctgaa ggcgctttga aggtcaacgg cagttctgcg tcgtcctgga aggtcacata
     9841 ttcccaagct tcctgtttcg ccaggacagc ctgcagcagt ttgttattca gtgcatgacc
     9901 ggatttataa gcgataaatg caccaataat attgtgacca cacatgaaca agtcaccgat
     9961 cgcatcgagc attttgtgac gcacaaattc gtcttcaaaa cgcaggccgt cttcgttcag
    10021 tacgcgataa tcgtcaacaa cgatggcaca atcgaagctg ccgcccaggc acaaaccacg
    10081 ggactgcaga tattcgatat cacgcatgaa accgaacgta cgcgcacggc tgatctggcg
    10141 cataaacgca tcagcggaga agttcatcgc atagcgctgg ttgctggaat caatagccgg
    10201 atggttaaaa tcgatggtga aatccagcga aaaaccattg tacggcttaa attcagccca
    10261 cttatcgcca tcttcgacac gaacagtctc tttgatgcga acaaattttt tggcgcagtt
    10321 caactcgtcg ataccggcgt caagcagcag gtatacaaac ggagcggcgc tgccgtccat
    10381 gatcgggatt tccggcgcgt taacttcgat aacaatgtta tcgatgccca ggcccgcgag
    10441 agcagcattg aggtgctcta cggttgaaat ccgtacatca tgctcgttga ccagacacgt
    10501 acagagcatg gtatcacgca cagatttggc atcggccggg aaatctaccg gtggattcaa
    10561 gtcggtgcga cgatagatga ccccggtgtt ggccggcgca gggcgtaacg tcagagtgac
    10621 tttcttgccg gtatgtaaac cgacacccgt cgcctgaacg atacgtttaa gtgtcctttg
    10681 tttgatcatc gtattatctc gccaaattac ctatccaacc gaagtgtact atacattcgg
    10741 cgggccagtt tagcacaaag agcctcgaaa ccaaaattcc agtcaattct taatcagctt
    10801 gcttacgcag gaatgctggg atatccagat aatccggctc tttcgcagtt tgcggcgcat
    10861 tgtcattcac gactttagca accggcttct gctcctgggt cagcggagcc atcccatgct
    10921 gctggtagcg atccatcact ggctgctgaa cctgcttatt ggtcaccaga gtgatttcag
    10981 gacgtttgtc catgccgata cctgtcgcaa caacggttac gcgcagctcg tcattcatat
    11041 ccgggtcaag agaagtaccg ataaccacag tcgcgttgtc ggaagcaaat gcacggatgg
    11101 tgttacctac cgtttcgaac tcatccagac gcaggtcgaa gcccgccgtg atgttaacca
    11161 gcacgccgcg cgcgccagac aggtcgatat cttccagcag cggagaagag atagccattt
    11221 cagcagcttc ttccgcacgg tcttcaccgc tcgccacgcc agaacccatc attgcgtagc
    11281 ccatctcaga cattacggtg cgtacgtctg caaagtccac gttcatcaaa cccggacgag
    11341 taatcagttc agcgatacct tgcacagcgc ctttcagtac atcgttcgct gcgccaaacg
    11401 catccagcag ggagataccg cggcccagaa ctttcagcag tttgtcgttc gggatagtga
    11461 tcagagagtc cacatgcttg gacagttcag tgatcccctg ctccgcgaat gccatacgct
    11521 tcttgccttc aaagttgaaa ggcttagtga cgacagcaac ggtcaggata cccaaatctt
    11581 ttgccacttc agcgacgact ggtgctgcac ctgtaccggt accaccaccc atacccgcag
    11641 caataaagac catgtctgca ccttccagcg ccgcacgcaa tgcatcgcga tcctcatcag
    11701 ccgcattgcg gccaacttct ggattagcgc cagcgcccag tcctttggtg ataccgctac
    11761 cgatttgaat cgtctgtcca accgctgttt tacgcagcgc ttgtgcatcg gtatttaccg
    11821 cgaagaattc aacaccttca atgcgctcgc gcaccatgtg ttcaacagca ttaccgccgc
    11881 cgccgccgac gccgatgact ttaatcaccg cgtcattggt aagttccatt ggttcaaaca
    11941 tagtttctct ccgatttgtg cctgtcgcct gaggccgtaa tcatcgtcgg cctcataaaa
    12001 attaaaactc ttttcgcagc caactattga gtcgcttgat ccacgagcca actgatgctg
    12061 taacacgttt ttctacttca gcttcaccgt taagatgtga ctctttccca tagtgaagca
    12121 atcccaccgc cgtcgaataa tacggctcct gagcataatc cgttaaaccg gtaatgttca
    12181 gcggcgcgcc gatacgcact tgcgtatgaa acacgcgctg agcacaggct gcaagacctt
    12241 cgatctgcgc tgcgccaccg gttaatacaa tgcctgccgc caggtgatgt ttaacccctt
    12301 gttggcgaag cttttcctgc aactgcaata tctcttcgtt gaccaggttg agcagctcgg
    12361 tatagcgcgg ctcgatcacc tctgccaggg tctgacgttg cagactccgt ggcggacgac
    12421 cgcctacgct cggcacttcc acgctctcat cttttccaac gatggaaccc agcgcacaac
    12481 cgtggcgaac tttaatcgct tcggcgtcgc ttggcggcgt gccaaaggcg taagcgatat
    12541 cactggtcac gacattgcca gcataaggaa ttaccttagt gtggcgcaat gccccaccgg
    12601 tataaacggc gatatccatt gtaccacctc cgatatcgac gacgcagaca cccagttcac
    12661 gttcatcttc cgtcaatacc gaataacttg atgccagtcc ggcaaatatc agttggtcaa
    12721 ctttcagccc acaacgttca accgctttga cgatgttttt cgccatatcg ttgtgacatg
    12781 tgatcaggtg cacttttgcc tgcatccgca cgcccgaaag tcctaccgga ttcttgatcc
    12841 cttcctgata gtcaatcgca tactcttgcg ggatcacatg cagcacacga tgttcatcgc
    12901 gcacacgcac cgatttcgcg gtatggacga cgttttccac atcttcttgc gtcacttctt
    12961 cttcagaaat aggcaccata ccaatttcat tctggcagct gatgtgctta ccagaaagcg
    13021 ccagatatac cgaagagatc tgacaatctg ccatcaattc tgcctggtca atggcgcgtt
    13081 gtacgcactt gaccacggat tcgaggtcgt tcaccccgcc tttatccata ccacgtgacg
    13141 ggcagctgcc cacgccaatg atattgacca taccgtcggg cagaacttcc cctactaaag
    13201 cggcaacctt cgcggtacca atctccagtc ctactaccag ttttctgtcc gtcgccttga
    13261 tcattgttgt tctgcctgtg cctgattttg ttgctgagta gattcctctg gcggcaaggg
    13321 cgcccagcct actgccgctc cagagtcata acgcaaatca acgtagctaa tccgtttgcc
    13381 atcggtttgc gccagctgct gtaaaaccgg ataaagttct acaaagcgag ccaaacgttt
    13441 catcgtatcg ccccggccaa gattgagctt aatatcgtta ttcagcgtca actgccagga
    13501 acgccgcgcg gtcatcgccg tttccttcag agtaaatctg tcctttgcca gcatctgccc
    13561 catttcgcga tagccctgca acacttcatt ggcgctgcct tccgggccat acagcattgg
    13621 aagcacctgc ttgctggtgc gatctggcgg cacgctgaag gtgtttcctt ccgcgtctac
    13681 catatgttga tcattccacc gcgcaatcgg cacatattca accagatgaa tcttcaattc
    13741 atcaggccac tgctttctga cgctcacctg cttaatccac ggcaggcgtt gttctatttg
    13801 cgtctggatg atgttgacat cctgggtcat aaaggtaccc ggctcaccca atgccaggat
    13861 cgactgccgg atatcgtcat tacgcgtgta atggcgttca ccggtcaaca ccagctttga
    13921 gagcggcagg cgttgcgcat cttccatcca gcccaacacg acccagccgc tcaccaacac
    13981 tgtcgttaaa acggtcagca ggaaaaggat ccccgccaga cgcgttccat tattgcggcg
    14041 agaagaaacc tcttcttcgc tgtttcgcgt gttcagagca gcctgcgaca tattagtccg
    14101 ccagttccag aattcgtact accaactgcg agaagctcat acctgcctga cgtgccgcca
    14161 tcggcaccag gctgtggctg gtcatacccg gtgaggtatt ggcttccagc agataaaact
    14221 gtccatcgct gtccagcata acgtcaatac gtccccatcc tttgcaacct aacgtcgtcc
    14281 atgctttcag cactaatgcc tgcaaattgg cctcttgtga cgcatccaga cctgcggggc
    14341 agaaatactg tgtctcatca gagagatact tcgcctcata atcatagaag gttccggacg
    14401 gttgaatacg tattgacggt aaaatttctt caccgagtat cgcaaccgtg aactccggcc
    14461 cacttagcca tttttcaatc aatacttctt catcgtgctg aaatgccaat cttaatgcat
    14521 cttgtagagc attttctgct actacttttg acattcccac actggaacct tcgcggctcg
    14581 gcttaacgat aaccggcaaa cccagagcag aaatttctgc taactgctta tcgctcaggc
    14641 ctttttcaaa ctctgcgcgg gttaacgcta cccacggcgc gaccggtaaa ccggcacctt
    14701 gccacagcag tttgctgcgt agtttatcca ttgaaagcgc agatgccatc actccgctgc
    14761 cggtataagg caagcccatc agctcgagca tgccctgcag cgtaccatct tcaccgccgc
    14821 gaccgtgtag cgcgataaac actttctgaa aacccatcga cttcagttgc gtcacgtcga
    14881 cttctttcgg gtcgacagga tacgcatcaa taccaccttc acgcagcccg gctaacaccg
    14941 ctgcgccaga attcagagaa acttcccgct cagcggaagt cccgcccaac aggaccgcga
    15001 ttttatcagt catgttgttc ttcctccgga gtttgcggct tcagtttgat ttcagctaaa
    15061 gaacgggcaa tttttccgat attaccagcc ccctgaacga gaatcaggtc gttaccggtt
    15121 aataccggtg ccagcatctc ggctacctgc gcagggtccg gcaccagaat gggatcaatt
    15181 ttcccacgtc cacgaattgt gcgacacagc gaacggctgt ccgctcccgg aattggcgct
    15241 tcgccagccg gatacacttc cagcatcaac agggtatcaa cctgcgtcag cacattggcg
    15301 aaatcatcat acaagtcgcg cgtacgggta aaacggtgcg gctgaaacag cattaccagg
    15361 tttttatccg gccagcctgc gcgcgccgct ttaatggtgg cgtcaacttc cgtcgggtgg
    15421 tggccgtagt catcgaccag cattgccgta ccgcttttac cattcactgg ctccagcggg
    15481 aattcaccga ggaaatcaaa acggcgacca gtccccagga agctctccag cgcacgcaaa
    15541 atagcctcgt cgtcaattcc ctcttccgta gcaaccgcaa ccgcagctgc ggcgttcagc
    15601 gcgttatgac ggcctggcgc attcagggtg acgcgcatcg gctctttgtc ctggcgcagc
    15661 agcgtaaagt gcccctgcgg gccaatctgc tgataatctt ctacacgcac gtcggcatct
    15721 tcgctgaagc cgtaagtcgt ggtctgacgt cccacacgcg gtaacaattc gcggatcacc
    15781 ggatcatcaa cacacatcac cgcacgaccg taaaacggca ggttgtgcag aaaattaata
    15841 aaagtctgtt ttaaattctc aaagtcgccc tggtaggtat ccatgtggtc ggcttcgata
    15901 ttggtgacaa tcgccaccat cggttgcaga tgcaggaacg atgcatcact ctcatctgct
    15961 tcggcaatca ggtaccgacc atgccccaaa cgcgcatgaa cccccgccgc ttttaccagc
    16021 ccgccgttaa cgaaggttgg gtcgagcccc gcttctgcgt agatgctgga aaccatcgcg
    16081 gtggttgtcg ttttgccgtg cgttcctgca atggcgatgc catgacgaaa acgcattaac
    16141 tcagccagca tttcggcacg acggatcacc ggaatacgcg cttcatgagc tgcgacaatt
    16201 tccgggttat cggcagaaat ggcgctggaa acaacgacca cgctggcatc acgtacgttt
    16261 tccgggcgat ggttgaaata aatcgtcgct cccagattca ttaactgctg cgtgaccgga
    16321 tttggcgcta aatcggaacc actgatctga taaccttcat tggccagaac ttcggcaata
    16381 ccgcccatac cggcaccacc gatgccgaca aaatgtatgt gccgaacgcg acgcatttcg
    16441 ggcacgatgg aacgcagttt tgccaattgt tgtgtattca ttctttacgc cattaacttc
    16501 ttaaattcat acgatgcaaa aggcatcgct acaattacgc ccgggcagcc cggctcactt
    16561 catttgccac tcgctcggtg gcatccggaa tggatgcagc gcgggcgcgt tctgccatgg
    16621 ttaataaggt ttctcgcgac cacccggcca gggtgttggc gacagcatcc acgctaagct
    16681 gtggctgctc gataattttg gctgcgcccg ctttttccag cggtagcgca ttccagtatt
    16741 gctggcggtc tttatgttga aacggcacaa acaacgccgg tagtcctgcc gcggcgattt
    16801 cactcaccgt taaagcaccg gagcggcaaa cgacgacatc cgcccacgca tacgccgccg
    16861 ccatatcatc aataaattcc gtcactttat gctgcggttg ccccgcttcg gcatacgcct
    16921 gttcaacgga ttgttgcgaa cctttaccgc tctgatgcca gatagtgact gaatcaccca
    16981 gtttcgcagc aacctgcggc attgtctggt taagaatgcg tgcgccctgg gaaccaccca
    17041 ctaccagcac acgaaccgga ccttcacgtc cagccaaacg ttgctgcggc aacggcagcg
    17101 ccagcacatc ggtacgcacc gggttaccca ccacttccgc attagggaaa gcgcctggaa
    17161 acgcctgcat cactttggtg gcaatcttcg ccagccattt attggttaag cccgcaatac
    17221 cgttttgttc atgaagtaca accggaatgc ctaacgacca cgcggccaga ccacctggac
    17281 ctgatacata gccgcccata ccgagtacca cgtcaggttt gtacgctttc ataatcgccc
    17341 gcgcctgacg ccaggcgttg aagatacgca gcggcgcagc tatcagtgct tttatacctt
    17401 ttccacgcag accagagata cgaatgaaat caatttcgat gccatgtttt ggcactaagt
    17461 ccgcttccat acggtcggca gtccccagcc agcgaacttg ccaaccctga gccattagat
    17521 ggtgcgcaac cgccagtccc gggaatacat gtccaccggt tccgcctgcc atcaccatta
    17581 atcgctttcc ttgaccactc atcgtgaacc tcgtacaaac gcctgcgctt tctccagacg
    17641 cgtttcataa tcaatacgca acagcatcat gatggctgtc gacataatca gtaagctcga
    17701 accaccgtaa ctgatcagcg gcaatgtcag acctttggtc ggtaacatcc ccgccgccgc
    17761 gcctacgtta accagcgcct ggaagctaaa ccagatgcca atagaacagg cgagaaaacc
    17821 ggaaaaacgg tggtcaattt ctaacgcttt gcggccaatc gacatcgcgc gaaaagcgac
    17881 gaagaatacc attaaaagtg ccagcaccac accgacatac cccagttctt cgccgataat
    17941 ggcgaaaata aagtcagtgt gcgcttccgg cagatactcc agtttttgta ccgagttacc
    18001 taaaccttgt ccccaaagtt cgccgcgacc aaacgccatc agcgattgcg ttaactgata
    18061 gccgctgcca aagggatctt cccacgggtt ccagaatgcg gtaacacggc ggatacggta
    18121 cggttcggcg agtatcagca acacaaccgc tgaaatgccc ataccgataa tggcaatgaa
    18181 ctgccacaat ttcgctcccg ccaggaacaa catcgccagc gtagtcacaa acaccaccac
    18241 caccgtacca aggtctggct gtgccagcag taacactgcc aacaccagaa tcacgcccat
    18301 cggtttcagg aagccgcgca ggttattacg tacttcgtcg cctttacgca ccagatagtt
    18361 ggcgatataa caaaacagcg acagttttgt cagctccgca ggctggatac gcagcaaacc
    18421 gagatcgatc caacgcgatg cccctttaac cgagctcccc actaccagca cgatcatcag
    18481 caggatgata gatccgagca gcatcgtggc actgtagcgt tgccagaact ccatcggcag
    18541 acgcagcgta atgatcgcca gaatgaatgc caggatcaga tagacgccat cacgcttcgc
    18601 gaagaagaac ggatcgttgg ttaagcgttg ccctatgggc attgacgccg aggtcaccat
    18661 gataaagcca atcgccgcaa ggccgaaggt cagccacagt aaggtgcgat cgtacatgat
    18721 caggctgtcg gtatcttttt cccgcgagcc catcacccag ccttttagcg ccgtggagat
    18781 ccagaccagg atactgaatc ctggcaggcg cggcattttc aggcgaggga gagataaacg
    18841 catcaaccta actccttcgc cagacgggca aactcattgc ctcgttgttc aaagttcttg
    18901 aactgatcaa ggctggcaca ggccggggag agcagaacca tatcgcccgg ctgaacacgc
    18961 ggagccagca agcgcatcgc ctgttccata gtttcggttt gttctgccac ttccgggcgt
    19021 agcgccgcca gctgcgcacc gtcacgacca aaacagtaca aacgcacgtt gtcgccattc
    19081 agatagcgcg ccagtggact gaagtccgcc gatttaccat cgccgcccag caacaaatgc
    19141 agcgtgccgt ctacctgcaa gccattcaac gccgcttccg tactgccgac gttagtggct
    19201 ttcgaatcgt taatccagcg tacgccattg tgctccagca ccacttcaaa gcgatgcggc
    19261 agaccggtga aggtggttaa cgctttcagg ctgctggcgc gcggcaaacc agctgcgtct
    19321 gccagtgcca gtgctgccag cgcattggtg tagttatgct gcccggaaag tttcatctct
    19381 ttcacgttca gcactttctc gcctttcact cgcagccagg tttctccctg ctgatgattc
    19441 aggtgatagt cacccatgtt gacgccaaag ctgacgcagc gttcatcagc accgcgaatc
    19501 ggcattgtta aggcatcatc agcattgacg acacaaactt tcgcattttc gtaaatacgc
    19561 aattttgccg cacggtattg ctgcaaacca aacggatagc ggtccatatg atcttcagtc
    19621 acgttcagaa tggtcgccgc caccgcctgt aagctggaag tggtttccag ctggaagctc
    19681 gacagttcca gcacgtacag ttcgcactca gcatcaagca gcatcaacgc tggcaggcca
    19741 atattgccac ccacaccaac gttaaccccc gccgctttcg ccatttcacc cactagcgtg
    19801 gtgaccgtgc ttttgccgtt agaaccggta atcgccacaa tcggtgcttg tgcttcgcgg
    19861 cagaatagct cgatatcgcc aacgatttcg attccggcat cagcggcagc gcttaaggat
    19921 ggatgcgcca gtgcaatacc gggactggcg acaatcagat ctgccgccat cagccattca
    19981 tcattcagac tgcccgtgtg gcgttctacg gcttcgggta atttatccag gccaggcggt
    20041 gtcatacgcg tatccataac gcgcggcgtc acaccgcgag cgaggaaaaa gtccacgcag
    20101 gaaagcccgg tgaggcccag gccgataatg acgacatttt taccctgata atcagccatg
    20161 attaacgtac cttcagcgtt gccagaccaa tcagaaccag catcagcgaa ataatccaga
    20221 aacgcacaat gacgcgcggt tccggccagc ctttcagttc atagtggtga tgaatcggtg
    20281 ccatgcggaa aatacgttgt ccgcgcagtt taaaggagcc gacctgcagg atgacagaaa
    20341 gcgtttctac cacgaacacg ccccccataa tcaccagcag gaattcctga cgtagcagta
    20401 cggcgataat gcctaacgca ccacctaacg ccagcgaacc tacatcgccc ataaagacct
    20461 gcgccggata ggtgttaaac cacaggaagc ccagtcctgc cccgactatc gcggtacaga
    20521 caataaccag ttccccggcg tgtcgcagat acggtatgtg taaatagctg gcaaagttca
    20581 tgttgccggt cgcccacgcc accagcgcaa aaccaccggc gacaaatacg gtcggcataa
    20641 ttgccaggcc gtcgagacca tcggtcaggt ttaccgcgtt gccagtaccc acaatgacga
    20701 agtaagccag cagaatgtag aacagcccca actgcggcat cacatcttta aagaatggga
    20761 ccaccagctg cgttgcgggc gtgtctttgc cggcaaggta cagggcgaag gcgacaccca
    20821 gcgcaatgac cgacatccag aaatacttcc aacgagcgat caaccctttg gtgtctttac
    20881 gcaccacttt gcgataatca tcaacaaagc caataacacc gtaacctacc agcaccacca
    20941 acacgcacca gacgtacgga ttggacgggt aagcccacag cagtacggag atcacaatcg
    21001 ccgtcaggat cataatcccg cccatggtcg gcgtaccgcg cttgctgaag tgtgattcag
    21061 gaccgtcgtt acgcaccacc tgaccaaagg aaagtttttg caaatgagca atcatacgcg
    21121 ggcccatcca caatgagatg aacagcgcgg tcagcaggct gacgatggcg cgaaacgtca
    21181 gataggaaaa gacgttaaag ccggaataat atttgaccaa atgttcggcc agccaaacta
    21241 acatgtccca ttctcctgta aagcgcgtac tacctcttcc atggcggcac tacgtgaacc
    21301 cttaactaaa atcgtaatta cctgttgctc agcaatcagt gatttaagac gcgtaattaa
    21361 cgcagtttta tcagcaaaat gttcgccaac gccgctggcg gtgctgatag catggctttg
    21421 tttacccacg cttaacacgc ggtcaatacc agcagctttt gccgcctcgc ccacctgtac
    21481 atggcaggct tcgctttcag cgcccagttc cgccatatcg cccaccacca gcacgcggta
    21541 gcccggcatt tcagccagta cctgaacagc ggcggtcatt gaaccgacat tggcgttgta
    21601 ggagtcgtcg agcagcaact ggttttctgc cagttggatg gggaacagac ggcctggaac
    21661 agctttcaga tttgccagcc ccgctttgat agcatcaagc gttgcgccca cggacatgga
    21721 gagcgcagcg gctgccagcg cattcgcaat attgtgacgc cccggcaacg gcagcagaac
    21781 atcgacgcta ccggttgggg tttgtagggt aaattccgta ccgtgcgagg tcacatggat
    21841 attggtggcg gtgaaatcgc tgttggcggc attgggtgag aaacgccaca ctttgcgtga
    21901 gccaattacg ctctgccagt tcagccagtc gttgttgtcg gcgttcataa tggcgatacc
    21961 gttttccggc aggccgctaa agatttcacc tttcgctttc gcgacacccg caagcgagcc
    22021 aaaaccttcc agatgcgccg ctgccaggtt gttgaccagc gcagcttccg ggcgagtcag
    22081 actcacagtc caggctattt cgccctgatg gttcgcgcca agttcaataa ctgcgtaatc
    22141 gtattccggc gttaagcgca acaacgtcat cggtacaccg atgtcgttgt tgagattgcc
    22201 tgccgtataa agcgtgttgc cgcactggct taaaatcgcc gccgtcatct ctttaacgga
    22261 ggttttgccg gaggaacctg tcagagcaac cacgcgcgcc ggaacttgct ggcgaaccca
    22321 tgcagccagt tcaccaaacg ccagacgcgt atccttgacg attaactgcg gcaggtcgat
    22381 atccagcgga cggctgacca gtagtgcgcc cgcgccgcca gctttcgcct ggtcggcaaa
    22441 atcgtgggca tcaaaacgtt cgcctttcag ggcaacaaac aggcagcccg gcgtcagttt
    22501 tcgggtatca gtggttacag catcaagggt gatatctgca ccttgcagtt caccgttgag
    22561 aatgtcggta agttggctaa gggttacgct aatcatgcaa tcacccccag cagacgcgcc
    22621 accgtgacgc gatcggagta gtccagacgc tgattgccaa caatctggta atcttcatgg
    22681 cctttgcccg cgaccagcac cacatcgttc tctttagcct gcataacggc gcaagtcacc
    22741 gcttcagcac ggccttccat cactttggca tgtccggcat ctaacattcc cgccagaata
    22801 tcgttgatga tggcacgcgg ttcttcggta cgcgggttat cgtccgtcac caccgccacg
    22861 tcagcaaact cttcggcaat tgcgcccatc agtggacgct tacctttatc gcgatcgcca
    22921 ccacagccaa agacacacca cagcttgccc gcacagtgca gacgcgccgc ctgtaaggct
    22981 ttttccagtg catccggcgt atgcgcgtaa tccaccacca ccgtcggttt gcctggcaca
    23041 gtgaacactt ccatacgtcc gcaaaccggt tgcagacgcg cggcggtttt caacagatca
    23101 gccaatggat agccgagtgc caacagtgtc gccagcgcga gcagcaggtt gctgacgtta
    23161 aaagcgccta tcagatggct ttcaatttcg ccatcgcccc aacttgagct aaagcgaatc
    23221 gtcacaccgc tgtcgtgata gttcacgtcg atcactttta accagcgtcc gtgacagttc
    23281 ggattaatat gatcttccat tgataccgca accgcgtccg gcagctttgc cagccaacgg
    23341 cggcccactt catcgtcggc gttaataatc gcctgaccgc aatgatgttc agaataaagc
    23401 agccatttcg cagcttcgta gtgttccata tcaccatgat aatcaaggtg atcgcggctt
    23461 aagttggtaa agaccgacgc cgcaaatttc aatgccgcca cacggtgctg taccagcccg
    23521 tgggaggaaa cttccattgc gcaaaacgtc gcgccctgct ccaccagccc cgccagctca
    23581 tgctgaacat cgactgccga accggtggta ttttctgtcg ggatcacttt ccccagcaga
    23641 ccgttaccaa cggtgcccat taccgcgctg gtttcgccaa gcagttggct ccactgcgcc
    23701 agcagctggg tagtcgtggt tttgccgttg gtgcccgtta cgcctacgag acgtaaattg
    23761 tcagagggtt catggtaaaa acggcccgcc agtgcagata aacgctcgtt gagctggctg
    23821 agatagatga ccggtacgcc gtgcatttca cggatttcac cgtcggtcgc ctcatctttc
    23881 gcctctgcaa taatggcagc cacaccttgc gctatcgcct gcgggatata tcgacgcccg
    23941 tccgcctgat gacctactac agctacaaag agatcgcccg ccgcagccac acggctgtcg
    24001 agtgtcatct ctcgcagtgc tcgcgaaggt gcgtctggca cccacggagc aagaaggtcg
    24061 cgcaaattac gatctgccac ctgtcccctc gccttgatta atcacaaatt catttttatc
    24121 gcccgttgtc agcgcatccg gctcgatgtt catggtacgc aatacgccgc ccatgatggc
    24181 accaaagacc ggcgcggaaa cggcgccgcc gtagtattta cccgcctgcg gatcgttgat
    24241 aacaacaacc agcgcgaagc gcggctgact cgcaggcgca acgcctgcgg tataagcaat
    24301 atatttattg atgtagcgac cgtccggccc gacctttttc gcggtaccgg ttttaatggc
    24361 gatacgatag cctttaatcg ccgccttcac gccgccgccg cccggtagcg ccacgctttc
    24421 catcatatgc accacggtgc ggacaatgga ttccgggaag acacgttcac cgggaaccgg
    24481 ggggtcaact ttggtaatcg acagtgggcg ataaatgccg tagctgccga tagttgcgta
    24541 gactcgcgct aactgtaacg gtgttaccat tagcccgtag ccgaaagaga aggtggccct
    24601 ctctatgtca gaccaccgtt gtttttgagg atataagcca ctgcgttctc cgaccaaccc
    24661 caaattggtc gcttttccca gtccaaaacg tgagtaagta tctactaacg ctgaggacgg
    24721 catcgctaac gccagcttgg aaacaccgac gttactcgac ttctgtaata ccccggtcag
    24781 ggttaattcg ctgtagcgtg ccacgtcttt gatttcgtgg ccgttaattc gataaggaat
    24841 ggtattgagt accgagtttt cccgcaccac gccacgttgc aacgcggtca tcaccaccat
    24901 cggtttaacc gttgagcccg gttcaaacac gtcggtgatg gtacggttac gcatcgcctc
    24961 tttcggcgtg ccgctcagat tgttagggtt gtatgacggg ctgttagcca tcgccagcac
    25021 ttcacctgtg ttgacatcca ccagcacggc gctaccagat tcagccttgt taaaggccac
    25081 cgcgttgttc agttcgcgat aaaccagcgc ctgcaggcgt tcatcaatac tcagcgccag
    25141 gttgtgcgct gcctggctgt cagtagaaga aatatcttca attacgcgac catagcggtc
    25201 tttacgcaca atgcgctcac ccggctgccc ggtaagccat ttatcgaaac tcttctcaac
    25261 gccctcaatc ccttgactat cgacgttagt aaagccaatg aggtgagcag tcacttcgcc
    25321 ggatggataa taacggcgag attcttcacg cagatgaata cccggcagtt tcagtttttt
    25381 gatgtagtcc gccatgtcag ggtttacctg acgcgccaga taaataaagc gccctttcgg
    25441 gttggcgtta atgcgggcag aaagctgatc cagcggaata ttgagcgcgt tagccagcgc
    25501 cttccagcgg tcaccgacgc tgataccgcc agcgtcatgc acttctttcg ggtcagccca
    25561 aatcgctttt accggcacgc tcaccgctaa cgggcgacca gaacggtcag taatcatgcc
    25621 gcgggaggtg gaaacttgct gaacgcgaag agaacgcatg tcgccctctt tcaccagcat
    25681 atccggggag ataacttgta accacgctac gcgtccgagc agaaaagcca gcgccaggag
    25741 aatacagccg cataacaacg caaaacgcca actaataaag ttggcatgtt cttcctgacg
    25801 ttttggtttc tgcgttttcg ccgctgcttt catgcgtcgc gtttatcctt atttttgcac
    25861 tacgatattt tcttgtgacg gatcaacatg ctgcatttgc agcttttccg tggcgatcct
    25921 ttccacccgg ctatggtcgc cgagcgcatt ctcttcaagg atcaggttgc gccattcaat
    25981 gtctaaagca tctcgctcca gcaccagttg ttcgcgctga gcggtcagta aacgggtatg
    26041 gtgcgccgtg gttaccacgg tcaccgccgt caaaataatg caaatgaaca ggcagagtgg
    26101 cagcttccca aatcgcaaaa gatcgtcacc gataacacca ggcaatgcat ggcgctcgtg
    26161 gcttcccatc gatcctttaa ctttgcttag agcttctgtc actctgctga tcatgcgttc
    26221 gtcctctctg cgatacgcag aactgaacta cgggcacgag gattctcagc cacctcttct
    26281 tcgcccggca ttaacttgcc taatgctcgc agctgacggc cacccagttt tttgagctgc
    26341 tcttcagtca tcggtaaccc tgccggaact tgcggaccgc ggctgttttc acgcataaaa
    26401 cgtttcacaa tacggtcttc cagcgagtgg aagctgatga tcgaaagccg cccacccggg
    26461 gccagcacgt tgagcgagct ttttagcgcc tgctctatct cctccagttc actgtttacc
    26521 caaatgcgca ccgcctggaa ggtacgggtc gcgggatgtt taaacttatc tttcaccggc
    26581 gttgcagcag ccacgacttc cgccagttct ttggtgcggg tcatcggctg ttcgcggtta
    26641 cgctcgacaa tggcgcgggc aatgcgtttg gcaaaacgct cttcaccata ggttttcaat
    26701 acccaggcga tatcggcttc ttctgcggtt tgtagccatt cagcggctga ctgcccacgg
    26761 gttgggtcca tacgcatgtc cagcggacca tcgcgcataa aggaaaagcc acgttcagca
    26821 tcatcaagtt gcggtgaaga gacgccaaga tcgaggagaa tgccgtcgat cttgccgata
    26881 agatcgcgct cggcaacgta ttcgcccagc gcggagaaag gtccgtggat gatggagaag
    26941 cgcggatcat caatagtctt cgcaacggcg atagcctgcg ggtcgcgatc gatcgccagc
    27001 aaacgcccct cttcgccaag ctgcgagagg atcagacgtg agtgaccacc gcgaccaaaa
    27061 gtcccatcaa tgtagatgcc atcaggacgg atattgaggc cattaacggc ttcatccagc
    27121 agcaccgtag tatgtttata gttttccatc attttataga gacaagtcct gcagtcgctc
    27181 cgataagtct ccagtagcca actgctctgc gtcgatatct tccttgacct gttgatgcca
    27241 agttgtttca tcccacagct caaacttgtt gaactgtcca accagcatca cttcttttgt
    27301 cagcccggca tgttgccgca gtactggcgc gattaacaat cgacctgcgc catccatctg
    27361 acattcgctg gcatgaccta acagtaggcg ctgcacacgg cgctcaactg ggttcatgct
    27421 cgacagacgc gataattttt gctcgataat ttcccattca ggcagggggt aaagcagcag
    27481 gcacgggtga tgaatgtcaa tggtgcaaac catttgaccg gcagcgttct caagcagctg
    27541 ttcccgataa cgggtaggca ctgataagcg ccctttgctg tcgagattga ctaacgttgc
    27601 tccccggaac atgccagcct caccccttat tcccactttg ccccacaatt tcccactgaa
    27661 aggagtttac ggagcggagg aaaagcttgt caagccagtc acaaggcata ccgaggtaaa
    27721 aaacccgatg tttacggcta atatcagcgt tgtttatttt acgtccaacg cgcgaagcaa
    27781 attaacgtta tgaatagctg taagaaaaaa tccctcatcg tcatcactgt tttaaaatga
    27841 ctcactattt tccacagcaa atataaagtg tcagtttgcg acgcgagcgg cattttagga
    27901 catatcttcc ccggttaaca gtccttgtta cgtctgtgtg gcgcttgatg ccagcgggtt
    27961 tgcgcaaaag caaagaaaag tgtttgttaa atcggcaatt catcgccgca tgtaacaaaa
    28021 taatgcaaaa acgcgctgtc gatatcactt aattattgtg aatttcagct ggtgagttaa
    28081 ttaacgggcg ggtttaaaac catttatcaa taatagtcag gaatagtctt atttacttta
    28141 agcatattga tgtccagtcc cgtactctac gcgccagagg gaaattcacc tggcgcgtat
    28201 ttttgttcgc ggcttagcta cggctgagca caccgcggcg atagagatta cgtttaatgc
    28261 gcgttaaacc aggttttggc ttacgcggtt cgtccaggct tgccaggaca atctccagca
    28321 cacgctctgc gacatcgcgg tgacgttgag ccactgccag caccgggcac tgtaagaagt
    28381 cgagcagttc gttatcgcca aaggtggcaa ttgccaggtc agaaggcagt ttaccatcgc
    28441 gacgtagcgt gacatccatc accccttgca acaacgcaaa cgacgttgtg aacagcgcct
    28501 gcggcatcag atgcgtttcc agccattttt cgaataactg ggcagccgcc tcccgctcat
    28561 agctgttggc atacaggaaa tgcacttcgc gcggatcatc tttccaggca gtacggaaac
    28621 cttgttcacg caggaagctg acagaaagct ccggcagcgc gccaagataa agcaccgtct
    28681 cggcgggaaa cttacgtaac tcttccgcca gcatttcggc atcatcctga tcggcaccaa
    28741 ccacgctggt gaaatgttca cgatcgaggg cgcggtccag cgcgacaatc gggaacgggg
    28801 cgttagccca gcgttgataa aaaggatgct caggtggcaa cgacgtcgaa acaataatgg
    28861 catcaacctg acgctgtaaa aggtgctcaa tgcagcgcat ttcgttgtct ggctgatctt
    28921 ctgagcaggc aatcagcagt tgataacccc gttgccgcgc ctggcgctca agatagttag
    28981 cgatgcgggt atagctggtg ttctccagat cggggatcac aagaccaata gaacgtgtgc
    29041 gtccagcacg aagcccagct gccacggcgt tcgggtggta attgtgctca cgcaccacag
    29101 ccatgacttt ttcaacggtt ttgtcgctca cacggtattg cttcgctttg ccgttaataa
    29161 catagcttgc agtggtccgc gacactcccg ccagccgagc gatttcatcc agtttcacaa
    29221 ttgccccttg cgtaaaatgt aaaaaccata gccattgtac tggtatgggt taaattcatt
    29281 aacatctaag cgcagaaaat taactgcggc aactgctttt attccaggtt cccactgatt
    29341 tcgcaaaaaa agcccagcgt gacatgttgg gctgcaaatt gcacactgag atcattctca
    29401 acgcattatt ttatcgccgc gcgaaagtcc gaccacacca gagcgagcaa cttccacaat
    29461 tttcgccacc tcgcgaatcg atgctaaaaa tgcatcaagc ttatcgctgg tgcctgctaa
    29521 ttgaacggta taaagcgagg gggtgacatc gataatttgc ccacggaata tttccgtatt
    29581 acgtttcact tcgtcacgcc cgtaaccgct ggcctgaatt ttcaccagca taatttcccg
    29641 ctcaacatgc gcgccctgcc ccaactcact cacgcgcaag acatcgacca gcttgtgtaa
    29701 ttgcttttcg atctgctcaa gtactttttc atcgcccacg gtctggatgg tcatacgcga
    29761 taatgtcgga tcgtcggttg gcgcaacggt caggctttca atgttgtagc ctcgctggga
    29821 aaaaaggcca atcacgcggg ataacgcgcc tgattcattt tcgagtaaga ctgataatat
    29881 ccggcgcata atcaggttct ctccgttttg cttaaccaca tttcatccat tccgcccccg
    29941 cgaatctgca tcgggtagac gtgctcactg ccatcgacgg taacatcaac aaacaccagg
    30001 cgattattgc gcacctgttc cagcgcctcg ctaagtttgc tttccagctc atgcggatga
    30061 gagatctgga tcccgacgtg accataggct tccgccagac ggacgaaatc gggtagtgat
    30121 tgcatataag attgtgaatg acggccggaa tagatcatgt cctgccactg tttcaccatc
    30181 cccagatagc ggttattgag attcaccacc agtacgggca actcgtattg caacgcggta
    30241 gacagttcct gaatgttcat ctgaatactg ccgtcgccag tgacgcaaac cacggtttct
    30301 tctggcaacg ccattttgac gcccagtgcc gcaggtaaac caaaacccat cgtgccgagg
    30361 ccaccggaat tgatccagcg acgcggtttg tcgaatggat aataaagtgc agcaaacatc
    30421 tggtgctgcc cgacatcgga cgtcacgtaa gcgtctccct tcgtcaaccg ccaaagagtc
    30481 tcgatcaccg cctgcggttt aatcttttca ctgtgagtgt catatttcag gcactgacga
    30541 gcgcgccact gttcaatttg ctgccaccag tcgcggatct catccagtgg ttgatgggcg
    30601 gattcttgcg acaagagttc aagcatttgt tcgaggacct ggcgagcatc ccccacaatc
    30661 gggatatccg cagtcacggt tttagaaatg gaagtaggat caatatcgat atgcagaaca
    30721 gtggcatttg ggcagtactt tgccagattg ttcgtcgttc ggtcatcaaa tcgtaccccg
    30781 acggcgaaaa tcacatccgc gttatgcatc gtcatattgg cttcgtaggt accgtgcatt
    30841 cccagcatgc ccagtgcctg acgatgcgtt gccggaaacg cccccagccc catcaatgag
    30901 gaaacaacgg gcagattcaa cgcctccacc gtttctttca actgctgatg gcagcccgcc
    30961 atgattgccc caccgcctac gtagacaacc ggtttttttg ccactaccag cgtttgcaga
    31021 gcacgcttaa tttgcccttt atgtccggta gtagtgggat tgtaagaacg catactgacc
    31081 gactccggcc agacataggg taatttgttc gccggattaa gaatatcttt cggtaaatca
    31141 acgactactg gtccaggacg accacttgcc gccagccaga aagccttttt cagcacctgc
    31201 ggaatgtctt ccgtttgctt aaccagaaaa ctgtgtttaa ccactggtcg cgaaatcccc
    31261 accatgtcgc actcctgaaa ggcatcgtaa cctatcaacg aggtcgctac ctgcccggaa
    31321 aggacaacta atggaatgga atccatataa gcggtggcga tgccggtaat cgcattggtc
    31381 gcccctggac ccgacgttac cagcacgacg ccgacttccc cggtcgcgcg cgccagacca
    31441 tcggccatat gcactgccgc ctgctcatga cgaactaaaa catgatcgat accacccacg
    31501 gtatgcaatg catcgtaaat atcaaggact gcgcctccag gataaccgaa tacttgttta
    31561 acgccctgat cgataagcga tcggacgacc atctcggctc cagacaacat ctccatggcc
    31621 tgcctcactg tttgatggaa aaaatgtgta aaacacatta accgtccgat cttgcttaag
    31681 caattggcag ccagagacat aaacgcaggg taataagaat aaacaggagg aaagatgaaa
    31741 agaaacgata aaatcctcca ttacgaagga ttaaattgat aataaatcgg ctgaatccca
    31801 caacttacag caatttctct atttttttaa ttaatcctaa aatagagagc ccacacattc
    31861 agaataaaat tctacattca ataaaaaatg cagaataaac cagacattca tgtctgacct
    31921 attctgcatt cagttagcgt ttgcaaattg agactaattg ttcttccatc cactgatggc
    31981 ctttatcgcg cccggcagct tcatgccatg agagataaca ggttctgctg ttttgtttta
    32041 acggcagcgg taatacctgt aattctaagg attcagcgaa ctcttcagcc agccaacgcg
    32101 gcgcaatagc gaccaaatgc gtttgcgaca ccacgctaag tacgctcatc attgccatgc
    32161 cctgatacgc gatactggct tgcttatcta ccgtgtcata ccaaggttga ctaaatgacg
    32221 cgaaacgatc gagcgaaacc gccgcatgtt gttcgttata aacatcatgt ttcagtaacg
    32281 ggcctttaat tgttggatga tttttgctgg ctaccagcac catttcatct ttaaataatg
    32341 gcacgctggt aaattcagga cgatggaagt cttcataact aatcacaaac tccgtttcct
    32401 gataacgcag ctgatgttca gtgttctgat ttaatgaaga cttgaacata acatgtatat
    32461 ttggcgcaat ctgctcaatg tgattataaa tctgcgaggt cagaatgctg tctaacgggc
    32521 tgcaaacaca aagatgaaat acacgttcac tactcgcggg ttcaaaacct gaaccaggca
    32581 attcattttg tactagttgc aatgcctggc gaactgaacc aaaaagttga aatgcgcgag
    32641 cagtcggttg aataccacgg ccataacgaa caaaaagctc gtcattaaac atcaccttca
    32701 ggcgtgcaac agcgttactg accgcaggtt gcgacatacc cagaacatga gcggcacggg
    32761 taatgttttg ctcctgcatc acggcatcga aaacggttaa caagttgaga tcgaccatgc
    32821 gtagctgtgg cttgcttaac tccgccgtct ctgaatgatc tgtttgtacc tctggcatac
    32881 ttaactccac tgtcacactt aactcccttt cccttattgg aatgcagaga aataatcctg
    32941 aagaatatga tttatc
//
LOCUS       DAJVUP010000027        32489 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.027, whole genome shotgun sequence.
ACCESSION   DAJVUP010000027 DAJVUP010000000
VERSION     DAJVUP010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32489
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.027"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            196..990
                     /gene="panB"
                     /locus_tag="OQQ75_001194"
     CDS             196..990
                     /gene="panB"
                     /locus_tag="OQQ75_001194"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000805487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HCS1975593.1"
                     /translation="MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGLNVMLVG
                     DSLGMTVQGHDSTLPVTVADIAYHTASVRRGAPNCLLLADLPFMAYATPEQAFENAAT
                     VMRAGANMVKIEGGEWLVETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG
                     DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA
                     FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH"
     gene            1002..1853
                     /gene="panC"
                     /locus_tag="OQQ75_001195"
     CDS             1002..1853
                     /gene="panC"
                     /locus_tag="OQQ75_001195"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HCS1975594.1"
                     /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEA
                     KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG
                     TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIR
                     KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG
                     ERDLDEIIAIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID
                     NKIVELA"
     gene            complement(2145..3041)
                     /gene="rpnC"
                     /locus_tag="OQQ75_001196"
     CDS             complement(2145..3041)
                     /gene="rpnC"
                     /locus_tag="OQQ75_001196"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnC"
                     /protein_id="HCS1975595.1"
                     /translation="MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL
                     HLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQGKPDKKMAFRMMRYSIAAM
                     HRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDIFYSPELARRVYNSPFPLVDITI
                     TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR
                     GHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEERQEFAQRFLSKG
                     MSREDVAEMTNLSLAEIDRLIN"
     gene            3315..3695
                     /gene="panD"
                     /locus_tag="OQQ75_001197"
     CDS             3315..3695
                     /gene="panD"
                     /locus_tag="OQQ75_001197"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HCS1975596.1"
                     /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI
                     DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR
                     PNVAYFEGDNEMKRTAKAIPVQVA"
     gene            complement(3699..4899)
                     /locus_tag="OQQ75_001198"
                     /pseudo
     CDS             complement(3699..4899)
                     /locus_tag="OQQ75_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001727225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
     gene            complement(4994..5434)
                     /locus_tag="OQQ75_001199"
     CDS             complement(4994..5434)
                     /locus_tag="OQQ75_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS1975597.1"
                     /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML
                     SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA
                     CRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY"
     gene            complement(5539..6309)
                     /locus_tag="OQQ75_001200"
     CDS             complement(5539..6309)
                     /locus_tag="OQQ75_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1975598.1"
                     /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
                     LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT
                     HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN
                     GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
                     LGINDVPLATTFGVLVVFIVVFYLICWSLIQRGRGLRS"
     gene            complement(6306..7232)
                     /locus_tag="OQQ75_001201"
     CDS             complement(6306..7232)
                     /locus_tag="OQQ75_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1975599.1"
                     /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK
                     STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
                     SMKALLAKLKLETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS
                     EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA"
     gene            7341..8003
                     /gene="can"
                     /locus_tag="OQQ75_001202"
     CDS             7341..8003
                     /gene="can"
                     /locus_tag="OQQ75_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HCS1975600.1"
                     /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPHFLWIGCSD
                     SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG
                     GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH
                     STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN
                     HK"
     gene            complement(8044..8580)
                     /gene="hpt"
                     /locus_tag="OQQ75_001203"
     CDS             complement(8044..8580)
                     /gene="hpt"
                     /locus_tag="OQQ75_001203"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004204384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HCS1975601.1"
                     /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRG
                     SFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
                     DSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDY
                     AQRYRHLPYIGKVILLDE"
     gene            8786..11176
                     /gene="gcd"
                     /locus_tag="OQQ75_001204"
     CDS             8786..11176
                     /gene="gcd"
                     /locus_tag="OQQ75_001204"
                     /EC_number="1.1.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinoprotein glucose dehydrogenase"
                     /protein_id="HCS1975602.1"
                     /translation="MAINNTGSRRLLVTLTVLFAALCGLYLLIGGGWLVAIGGSWYYP
                     IAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGI
                     WLILPFVWRRLVIPASGAVAALVVALLISGSILTWAGFNDPQEINGTLSADATPTEAI
                     SPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEV
                     TPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPKLKTNESFQHVTCRGVSYHEAKAE
                     TASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYE
                     PTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSD
                     EHTFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
                     GKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV
                     VPAPEKPVPQGAAKGDYVTPTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQM
                     RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGN
                     PMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV
                     VWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN
                     GEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDVK"
     gene            complement(11223..12773)
                     /gene="cueO"
                     /locus_tag="OQQ75_001205"
     CDS             complement(11223..12773)
                     /gene="cueO"
                     /locus_tag="OQQ75_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HCS1975603.1"
                     /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA
                     RNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHW
                     HGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV
                     VIEDDEILKLMLPKQWGIDDVPVIVQDKKFNADGQIDYQLDVMTAAVGWFGDTLLTNG
                     AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL
                     MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL
                     SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN
                     MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT
                     QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDT
                     GMMLGFTV"
     gene            12939..13286
                     /locus_tag="OQQ75_001206"
     CDS             12939..13286
                     /locus_tag="OQQ75_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacC family pilotin-like protein"
                     /protein_id="HCS1975604.1"
                     /translation="MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKND
                     CGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKA
                     LARDSLSLLAYVK"
     gene            13392..14258
                     /gene="speE"
                     /locus_tag="OQQ75_001207"
     CDS             13392..14258
                     /gene="speE"
                     /locus_tag="OQQ75_001207"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HCS1975605.1"
                     /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
                     RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
                     SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT
                     DPIGPGESLFTSAFYEGCKRCLNPSGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF
                     YQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP
                     QYLQDALASQPS"
     gene            14274..15068
                     /gene="speD"
                     /locus_tag="OQQ75_001208"
     CDS             14274..15068
                     /gene="speD"
                     /locus_tag="OQQ75_001208"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HCS1975606.1"
                     /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
                     ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP
                     ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
                     VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML
                     LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV"
     gene            complement(15105..15467)
                     /locus_tag="OQQ75_001209"
     CDS             complement(15105..15467)
                     /locus_tag="OQQ75_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414661.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HCS1975607.1"
                     /translation="MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ
                     AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCG
                     VEDFLQVVAAYRNFVQQK"
     gene            complement(15642..18239)
                     /gene="acnB"
                     /locus_tag="OQQ75_001210"
     CDS             complement(15642..18239)
                     /gene="acnB"
                     /locus_tag="OQQ75_001210"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HCS1975608.1"
                     /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF
                     LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL
                     IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP
                     ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG
                     PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG
                     KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV
                     LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA
                     CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
                     PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
                     PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
                     KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNI
                     VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPIL
                     CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP
                     TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
                     TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA
                     DGVIFQTAV"
     gene            18594..20447
                     /locus_tag="OQQ75_001211"
     CDS             18594..20447
                     /locus_tag="OQQ75_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HCS1975609.1"
                     /translation="MKMTLPFKPHVLALICSAGLCAASAGLYIKSRTVEAAVETQSTQ
                     LAVSDAAAVTLPATVSAPPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTY
                     PANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNL
                     GDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSNEQKVITTTKKAVPVKQTVTAPVIPSN
                     TVLTASPVITEPATTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEP
                     FIDSFVRGFGYSMGVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHN
                     GDNINIDVNNFNRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSA
                     TQLPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSYDDFRDFS
                     RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPQIQQRREAARERIQPASPEQRQ
                     AVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSA
                     SPEQRQVFRERVQESRPQRLNDSNRTARLNNDQRSAVRERLSERGARRLER"
     gene            complement(20518..21942)
                     /gene="lpdA"
                     /locus_tag="OQQ75_001212"
     CDS             complement(20518..21942)
                     /gene="lpdA"
                     /locus_tag="OQQ75_001212"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HCS1975610.1"
                     /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV
                     CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA
                     GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP
                     RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI
                     VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN
                     GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC
                     ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNPKAKKK"
     gene            complement(22267..24159)
                     /gene="aceF"
                     /locus_tag="OQQ75_001213"
     CDS             complement(22267..24159)
                     /gene="aceF"
                     /locus_tag="OQQ75_001213"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HCS1975611.1"
                     /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM
                     EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA
                     AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI
                     KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDE
                     VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM
                     IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIR
                     RLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKV
                     DFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAK
                     RKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV
                     PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVN
                     APEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSD
                     IRRLVM"
     gene            complement(24174..26837)
                     /gene="aceE"
                     /locus_tag="OQQ75_001214"
     CDS             complement(24174..26837)
                     /gene="aceE"
                     /locus_tag="OQQ75_001214"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008814576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HCS1975612.1"
                     /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA
                     RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
                     ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ
                     EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
                     DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII
                     NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
                     REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHSI
                     KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT
                     YLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLK
                     NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
                     QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL
                     IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
                     QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR
                     EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
                     VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
                     LAKRGEIDKKVVADAIAKFNIDADKVNPRLA"
     gene            complement(26998..27762)
                     /gene="pdhR"
                     /locus_tag="OQQ75_001215"
     CDS             complement(26998..27762)
                     /gene="pdhR"
                     /locus_tag="OQQ75_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex transcriptional
                     repressor PdhR"
                     /protein_id="HCS1975613.1"
                     /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
                     DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE
                     TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA
                     AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAR
                     EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN"
     gene            28303..29676
                     /gene="aroP"
                     /locus_tag="OQQ75_001216"
     CDS             28303..29676
                     /gene="aroP"
                     /locus_tag="OQQ75_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter AroP"
                     /protein_id="HCS1975614.1"
                     /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA
                     GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL
                     YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK
                     VIAVVAMIIFGGWLLFSGNSGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE
                     LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF
                     HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV
                     NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG
                     VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT
                     AKAVKAH"
     gene            complement(29719..30573)
                     /gene="ampE"
                     /locus_tag="OQQ75_001217"
     CDS             complement(29719..30573)
                     /gene="ampE"
                     /locus_tag="OQQ75_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase regulator AmpE"
                     /protein_id="HCS1975615.1"
                     /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL
                     GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND
                     SHARVTMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGIWGPV
                     TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL
                     PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL
                     LTIYGALV"
     gene            complement(30570..31121)
                     /gene="ampD"
                     /locus_tag="OQQ75_001218"
     CDS             complement(30570..31121)
                     /gene="ampD"
                     /locus_tag="OQQ75_001218"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HCS1975616.1"
                     /translation="MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFG
                     GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY
                     QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPD
                     RKTDPGPAFDWARFRALVSKETT"
     gene            31209..32102
                     /gene="nadC"
                     /locus_tag="OQQ75_001219"
     CDS             31209..32102
                     /gene="nadC"
                     /locus_tag="OQQ75_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HCS1975617.1"
                     /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND
                     ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ
                     PLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLR
                     SALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN
                     LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD
                     FISVGALTKHVQALDLSMRFR"
     gene            32305..>32489
                     /locus_tag="OQQ75_001220"
     CDS             32305..>32489
                     /locus_tag="OQQ75_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS1975618.1"
                     /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
                     TFVPYRTAVELCALEHGG"
BASE COUNT         7833 a         8833 c         8004 g         7819 t
ORIGIN      
        1 ccacgctaca acaggatgga actataccaa tagaagctgg tgagtttaaa gccaccagta
       61 ctttccaggt aacctaccct taataagtcc accgcaccgc catcatctgg cggtgcggta
      121 attgataaat cattgccccc accaatgtga ctgataaaat gccaggcaac acgacatcat
      181 ttatcaggac acgttatgaa accgaccacc attgcttcac ttcagaaatg taagcaggat
      241 aaaaagcgtt tcgcgaccat caccgcttac gactacagct tcgcgaaact atttgctgat
      301 gaaggactta acgtcatgct ggtaggcgac tcgctgggca tgacggttca gggtcacgac
      361 tccaccctgc cggtgaccgt tgccgatatc gcctaccaca ctgcctccgt acgtcgtggt
      421 gcgccaaact gcctgctgtt ggctgacctg ccgtttatgg cgtatgccac gccggaacaa
      481 gcctttgaaa acgccgcaac ggttatgcgt gccggtgcca atatggtcaa aattgagggc
      541 ggtgagtggc tggtcgaaac cgtaaaaatg ctgaccgaac gtgccgttcc tgtatgtggt
      601 cacttaggtt taaccccaca gtcagtgaat attttcggtg gctacaaagt tcaggggcgc
      661 ggcgatgaag cgggcgatca actgctcagc gatgcattag ccttagaagc cgctggggca
      721 cagctgctgg tgctggaatg cgtgccggtt gaactggcaa aacgtattac cgaagcactg
      781 gcgatcccgg ttattggcat tggcgcaggc aacgtcactg acgggcagat cctcgtgatg
      841 cacgacgcct tcggcattac cggcggtcac attcctaaat tcgctaaaaa tttcctcgcc
      901 gaaacgggcg acatccgcgc ggctgtgcgg cagtatatgg ctgaagtgga gtccggcgtt
      961 tatccgggcg aagaacacag tttccattaa ggagtcacgt tgtgttaatt atcgaaaccc
     1021 tgccgctgct gcgtcagcaa attcgccgcc tgcgtatgga aggcaagcgc gtggcgctgg
     1081 tgcctactat gggtaatctg cacgatggcc atatgaagct ggtcgacgaa gccaaagccc
     1141 gcgccgatgt ggtcgtcgtc agtattttcg ttaacccgat gcagttcgac cgcccggaag
     1201 atctggcacg ttatccacgg accttgcagg aggactgcga gaagctaaac aaacgtaaag
     1261 tggatttagt tttcgcccct tcggtaaaag agatctaccc gaacggtact gaaacccata
     1321 cttacgttga cgttcccggg ctttcgacca tgctggaagg cgcgagccgt ccggggcatt
     1381 ttcgcggcgt ttcgactatc gtcagcaagc tgtttaacct ggtccagccg gacatcgcct
     1441 gcttcggtga aaaggacttt cagcaactgg cgctaatccg caaaatggtt gccgatatgg
     1501 gcttcgatat tgaaattgtc ggcgtcccga ttatgcgcgc caaagatggc cttgcgctca
     1561 gttcccgtaa tggttatctg acggcggaac aacgcaaaat tgcgcccggt ctgtacaaag
     1621 ttttaagttc aattgccgac aaattgcagg ctggcgagcg ggatcttgat gaaattattg
     1681 ccattgcagg gcaagaactg aatgaaaaag gcttccgcgc cgatgatatt cagattcgcg
     1741 atgccgacac gttgctggaa gtctctgaaa ccagcaaacg agctgtaatt ctggtagccg
     1801 cctggcttgg cgatgcccgc ctgatcgaca acaaaatcgt cgaactggcg taatgctttt
     1861 actctaaata attcaagttg caggaaggcg gcaagcgagt gacaaattcg tcaggaacga
     1921 atttgcccag ccgcaggctg gccttcggtg agagacatgg atgtctctca ttaatcccca
     1981 ggagcttaca taagtaagtg actggggtta gcgaacgcag acacagcaca tgcaatttaa
     2041 agtatgacga gtataactgg cgctacggct gatggcgcca attattaatt tgccccacgt
     2101 catggcgatg gcgtctgtaa gcaattattc ataacgcaga caacttagtt aatcagccta
     2161 tcaatctcag caagagataa atttgtcatc tctgcaacgt cttcccgaga catcccttta
     2221 ctcagaaaac gctgggcgaa ttcttgcctt tcctcctgtc ttccctgctg aatccccttc
     2281 tcaatccctt tctcttcaaa ccactgcgcc agcgtcatca tagactcccc tcccgtttcc
     2341 ctgtctctca gcacaccata aaacaaatcc gcttgttcag tatgaccgcg ttgcagcata
     2401 tagttttgca tggcaactaa ctgacttccg ctagtgtacc cttcgtcaat cagcgtgacc
     2461 agttgctcca gcaataacat taagtcgcgc tggcgaatat gtttttgcag tagttcgaga
     2521 atcgcaatcc gccgatgttg catgatttcg tcatccggtg tgatggtgat atccaccagc
     2581 gggaaaggac tgttatagac gcgtcgtgcc agctccggcg agtaaaatat atcaaaccag
     2641 cacattgaga gcggataagg tgtggcctcg ccctgataaa acagtatcgg caccaccagc
     2701 ggcagcttat cgtgatccgc ctccagatgc cggtgcatgg cagcaataga ataacgcatc
     2761 atgcgaaagg ccattttctt atccggcttg ccttggtgtt caatcacaac atgcagataa
     2821 ccgggattgc cctgcatttg cacggaatag agcacgtccg tgctgtgtcc tttcaggctc
     2881 tcttcaatga aactccccga ctctaaatga agcgtgttga ggtcacaaag ttctcgtaat
     2941 tccactggca aatgtatctc cagaaagtcg cgagccgtct ccgcgtgcat taaaaattgt
     3001 ttaaacactg catcatgcgg tgtggtactc ggtgcatcca tcttccctgc cttccgtgtt
     3061 gtcttgcgtg aaggcagtat ccagtcaagg cgtgccatcg tcagccacct ctttagtgtt
     3121 taccgagcag cgttcagaga aatttcaatt ggttacagcc gttacatggc acgcttcggc
     3181 acggtacgca aactgctgat gtaaatgccg tcagatgagt agacactaaa caaaaatcgg
     3241 gcaatactgc gtgagaattt cctcaaagca ggcatcgcct gcttcgttaa cgacagggta
     3301 gaaaggtaga agttatgatt cgcacgatgc tgcagggcaa actccaccgc gtgaaagtga
     3361 ctcatgcgga cctacactat gaaggttctt gcgccattga ccaggatttt cttgacgcag
     3421 ccggtattct cgaaaacgaa gccattgata tctggaatgt caccaacggc aagcgtttct
     3481 ccacttatgc catcgcggca gaacgcggtt cgagaattat ttctgttaac ggtgcggcgg
     3541 cccactgcgc cagtgtcggc gatattgtca tcatcgccag cttcgttacc atgccagatg
     3601 aagaagctcg cacctggcga cccaacgtcg cctattttga aggcgacaat gaaatgaaac
     3661 gtaccgcgaa agcgattccg gtacaggttg cttgattgtt atccctgcgg ctggttactc
     3721 accagccgcg acatcgtctc cagcgaatcc gttcttaaga tataaagtcg ttttagtaac
     3781 aacggattat cccccggttt tactttgcct ttcatggttg tcaccgccag gtgaaatccg
     3841 gcatcgtttg ctgccttcac ggctttgtca ttaaatccgc caaacggata cgaaagatac
     3901 cagacatgcg gattaaattg cgccagagcg cggcgtgaac gtgcaaaatc aaacagaata
     3961 ttgtgttcac tacggctcgg taatatgggg cggcgataac catccacccg atgcaaaaaa
     4021 tgggtatgtg actggaaatc aaaaacatcg cgaatttcgt taagttcaga aacgctcata
     4081 aattgcagcg attttgggtc ccacttctgc gggtgacgtt tgatgcgcga ggtaacaata
     4141 aacgccgtcg ccttcatgcc atattgtttc aacacgggat acgcatagcg gctcaccgat
     4201 ttgaggccat catcaaaggt aatcaccacc gctcgcgcag ggagattgat cttattcttc
     4261 acgtaacctt ccagctgcac catgctcagt gtcgcgtatc ccctgtcgcg cagccaggcc
     4321 atctggttat tgaaagcgcg tactgaggtg gtcgtcgaag tatggcgaaa acgggtgttt
     4381 tcttcatcgc gcagaatatg gtgataggtt agcaccggca ggccattatc gggttgggca
     4441 tccagcgcgc tgatataggc cagtcgatcg ccaatacgga tctgatacca ggtttgattt
     4501 aacctgtctt tcagtttatg caaaatcggg tagcgcaaat tgtccgccag taccccataa
     4561 tggcgcactg cccgcactcg gcgcgttata gaccggcgta tctttccagg taattaagtt
     4621 ctgattactc agcggcttgt tgaggtcacc caaaccgtct tcaacttttt gtcgcccctg
     4681 aactggctcg agatgccctt tatcgataaa ccctttacca aagccaaaat taaatgcgta
     4741 ataacttgcg gcagtgggct ccacggcaat gatttgcccg gcccgaatat tccccacggt
     4801 caccatcttg tcgccaattt gcgcccagat cgcagcattt tcgatggttt gcatataacg
     4861 ggcaggtaac gcggcactaa cgcttgcggt aaacagcatc agcaggatga ataacagctt
     4921 gtttatacat gaaaaaataa ccgagggtga aacaacgctt gtattgtagc aaaagcgcca
     4981 tcagaatcgc gggttaatac tcatacaaat tatgtttgag gacaaaaggc ggattttttt
     5041 gttgttggtg ccaaagacta ctcacctccg gcgcacccag ttcgacaata cgctcgcgaa
     5101 actctgaact ggtcatggtt tcacggcaag ccatcatctg ttcaattaac ggtaacgtga
     5161 caccagaaat cacttcacaa cgggagtgtt tatggcttaa taatgaagcc acgcggtacg
     5221 gtggcgctcc ggctatatcg gttaagaaga tgacaccctc accagagtcc gcttcatgca
     5281 gagcatcgca catcatgcgg ctgagcatat tagagcttaa tccgcgccag aaattcacgg
     5341 cccggcactg aagaagtgcc ccatgttttt tctccagcgc atccagtatc tcttgcgccc
     5401 ggtcatcgtg acaggtaatt acccaaccta acatcgcctt cctccttagc cgaaaatcag
     5461 tctatcctga ccattgttga taaagggtga tagccgtcaa aactcctctc ccccgaatcc
     5521 agaggagagg aaatagcctt agctacgcaa accacgtcca cgttggatca gcgaccaaca
     5581 gatcaaataa aacaccacaa taaagaccac cagtacgcca aaggtagtgg ccagcggcac
     5641 atcatttata ccgaggaagc cgtagcggaa accactgatc atataaacga ttgggttcag
     5701 gtgcgacagc ccttgccaga acggcggcaa caaagtcagg gagtaaaaca ccccgcccaa
     5761 atacgtgagt ggcgttaaca caaaggttgg caccaggctg atgtcatcga acgttttggc
     5821 aaacacgccg ttcagcaaac ccgcaaggga gaatagcacc gccgtgagca ccagggttaa
     5881 ggcaacgaat acccacgaat gcacctgaaa cggcacaaaa aacagtgaaa ttgccgtcac
     5941 cagaatgcca acaaacagac cacgcgccac gccaccgccg acatatccgg caataatgac
     6001 gtgagtcgga accggcgcta ccagcagctc ttcaatatta cgctggaact tggcaccaaa
     6061 aaatgatgac gcgacgttag cgtaggcatt ggtgatcacc gacatcatga tcagccccgg
     6121 tacgatgaac tgcatatagc tgaagccatg catatcgcca atacgcgaac ctatcaggtt
     6181 accgaagata ataaagtaaa gggtcatggt gatgactggc ggcaccagcg tctgcaccca
     6241 gatacgcata aagcgatgga tctctttcgc ccagatgctt tttagcgcca cccagtaaag
     6301 atgcatcatg cgcgatctcc ttgtttttca ttaaccagtg aaacaaacag ctcttccaga
     6361 cggttagctt tgttacgcat acttaatacc tgaatgccct gctcacttaa ctgcgtaaat
     6421 acgctgttga tcccctgctc acgcagcact tcaacttcca gcgtcgcggt atcgaccagt
     6481 cgatactgat agccatcgag cttcggtaac gggcttttcg gtgcgagatc gagaataaag
     6541 gtttccaatt tcagcttcgc cagcagcgcc ttcatcgagg tattttccac cagctcaccg
     6601 tgttgaataa tgccgatatt gcggcacagc atttctgctt cttccaggta gtgtgtagtg
     6661 agaatgatgg tggtgccttt gtcgtttaaa tccttcaaaa agccccacat tgagcggcga
     6721 agttcaatat ccacgcctgc ggtcggttcg tcgagaatca gtagtttagg ttcatgcatt
     6781 aacgcacggg caatcattaa acggcgcttc atcccgccag ataacatacg cgcacgttcg
     6841 ttgcgttttc cccataaatc gagttgtttg agatattttt cgctgcggat gtacgcttct
     6901 ttgcgctcca cgccgtagta ccctgcctga ttcaccacaa tttgctgcac ggtttcaaac
     6961 gggttgaagt taaattcctg cggcaccagt cccaactgac gtttagcgtt cacgacatcc
     7021 ttctcgagat cgtaaccaaa tacgctgacc cgcccggagg ttttatttac cagagagctg
     7081 ataataccga tagtggtcga tttcccggcc ccgttcggcc cgagaagcgc ataaaaatca
     7141 cccgcttcga cctgcaaatc tattccacga agcgcctgaa cgccgcctgg ataggttttt
     7201 ttaagctgtt gaagttccag tgcaatggtc ataaattttt acttacctta cgttcttaca
     7261 ctttatctgt ggtttaaatc gtcccggagt taccctatat tagccaaacg taattatttg
     7321 gttacaggtc gttaacctcc atgaaagaca tagatacact catcagcaac aatgcactat
     7381 ggtcaaaaat gctggtggaa gaggatcccg ggttttttga gaaactggca caagcgcaaa
     7441 aaccgcactt tctatggatt ggatgttccg acagtcgcgt tcctgcagaa cgtttaaccg
     7501 gtcttgagcc gggcgaactc tttgttcacc gtaatgttgc taacctggtc attcacaccg
     7561 acctgaactg cctttccgtg gttcagtatg cagtggatgt actagaagtt gaacacatta
     7621 ttatctgtgg ccactacggt tgcggcggcg tacaagccgc agttgaaaac ccggaactgg
     7681 ggcttatcaa caactggctg ctgcatatcc gcgatatctg gttcaaacat agctcattgc
     7741 tcggcgaaat gccgcaagag cgccgtctgg ataccttgtg tgaactgaac gtcatggaac
     7801 aggtgtataa cctaggccac tccaccatta tgcaatcagc gtggaaacgc gggcagaaag
     7861 ttaccattca cggctgggcc tatggcattc acgacggctt gctgcgtgat ctggatgtta
     7921 ctgccaccaa ccgcgaaacc cttgagcaac gttaccgtca cgggatttcc aacctcaagc
     7981 tgaaacacgc caaccacaaa taaaaatgcc atgccggatg caacacatcc ggcaacttca
     8041 cacttactcg tccagcagaa tcactttgcc gatatacggc agatgacggt aacgctgtgc
     8101 gtaatcaatg ccgtaaccca ccacaaactc atccgggatc gagaaaccga taaattctac
     8161 cgggacgttc acttcacgac gggacggttt atccagcagc gtacaaatcg ccagcgactt
     8221 cggttcgcgc aggcttaaga tctcacgcac tttcgacagt gtattccccg agtcgatgat
     8281 atcttcaaca atcagcacgt ccttgccacg gatatcttca tccagatctt tgaggatttt
     8341 cacatcacgg gtggtggaca tgccgctacc gtagctggag gcggtcataa agtcgacttc
     8401 atgagatacc tgaacttcac ggcacaggtc cgccataaac ataaatgagc cacgcagcag
     8461 acccaccagc accatatcgc tgccgctgtc tttgtaacgc tcagtaatct gacgacccag
     8521 ttcggcgata cgcgctttaa tctccgcttc ggggatcatt acttctacag tatgtttcat
     8581 atctctaacc atatgattta aaaacaaatc acttcgcacg ggcaggtttt ggcaccgcaa
     8641 caaagcgcaa gacacgcagt ataccagtaa aactattcat tcgcggaatc tgttaataaa
     8701 gctcgaattg tgatgacgat cacacatgtt aaaacctata attaattgct actaaaatat
     8761 taatgaattg aaatggtgtc tctttatggc aattaacaat acaggctcgc gacgattact
     8821 cgtcacgcta acagtccttt ttgcagcgct ttgcgggctg tatctactca ttggcggagg
     8881 ctggctggtc gcgattggcg gctcctggta ctaccctatc gctggccttg tgatgctcgg
     8941 cgtcgcctgg atgctgtggc gcagtaaacg tgccgcgctt tggctatacg ccgccctgct
     9001 gctcggcacc atgatttggg gcgtctggga agttggtttc gacttctggg cgctgactcc
     9061 gcgcagcgat attctggtct tcttcggcat ctggctgatc ctgccgtttg tctggcgtcg
     9121 cctggtcatt cctgccagcg gcgcagttgc cgcactggtg gtggcactgc tgattagcgg
     9181 tagtatcctg acctgggccg gatttaacga tccgcaggaa atcaacggca ccttaagcgc
     9241 cgatgccaca cctacggaag ctatctcacc cgttgccgat caggactggc ctgcctatgg
     9301 tcgcaatcag gaaggtcaac gcttttcacc tctgaaacaa attaacgccg ataacgtcca
     9361 taatctgaaa gaagcctggg tgttccgtac tggcgatgtg aagcagccga acgatccggg
     9421 cgaaatcacc aatgaagtga cgccgattaa agtgggcgac accctttacc tgtgtaccgc
     9481 tcaccagcgc ctgtttgcgc tcgatgccgc cagcggcaaa gagaaatggc attacgatcc
     9541 taagctgaaa actaacgagt ctttccagca cgtaacctgc cgtggcgtct cttatcatga
     9601 agccaaagca gaaacggctt cgccggaagt gatggcggat tgcccgcgtc gtatcattct
     9661 tccggtcaat gatggtcgac tgattgcgat taacgctgaa aacggcaaac tgtgcgaaac
     9721 cttcgccaat aaaggcgtgc tcaatctgca aagcaatatg ccagacacca aaccgggtct
     9781 gtatgaaccg acttcgccac cgattatcac cgataaaacc atcgtgatgg caggttcagt
     9841 taccgataac ttctcaaccc gcgaaacgtc tggcgtgatc cgtggttttg atgtcaacac
     9901 cggggagctg ctgtgggctt ttgatcccgg cgcgaaagat ccgaacgcaa tcccgtctga
     9961 cgaacacacc tttaccttta actcgccaaa ctcctgggca ccagcggcct atgacgcgaa
    10021 gctggatctg gtctatctgc cgatgggcgt gaccacgccg gatatctggg gcggtaaccg
    10081 cacaccggaa caggaacgtt atgccagctc gattctggcg ctgaatgcca ctaccgggaa
    10141 actggcgtgg agctaccaga ccgttcacca cgacctgtgg gacatggatc ttccggcaca
    10201 gccgacgctg gcggacatca ccgttaatgg tcagaaagtg ccagttattt acgctccggc
    10261 gaaaaccggc aacatttttg tgctcgatcg tcgcaatggc gaactggtgg ttccggcccc
    10321 ggaaaaaccg gtgccgcaag gtgctgcgaa aggcgattac gttactccga cccagccgtt
    10381 ctctgaactg agcttccgtc cgaagaaaga tttgagcggt gcggatatgt ggggagccac
    10441 catgtttgac caactggtgt gccgcgtgat gttccaccag atgcgctatg aaggcatttt
    10501 cacgccgcca tctgaacagg gcacgctggt cttcccgggt aacctgggaa tgtttgaatg
    10561 gggcgggatt tccgttgatc caaatcgtga agtggcaatt gccaacccaa tggcactgcc
    10621 gtttgtttcg aaactgatcc cacgcggtcc gggtaacccg atggagcagc cgaaagatgc
    10681 caaaggcacg ggtacggaat ccggcattca gccacagtac ggtgtaccgt atggtgtcac
    10741 gctcaacccg ttcctctcac cgtttggtct gccgtgtaaa cagccagcat ggggttatat
    10801 ctcggcgctg gatctgaaaa ccaatgaagt ggtgtggaag aaacgtattg gtacgccgca
    10861 ggacagtatg ccgttcccga tgcctgtacc ggtgccgttc aatatgggta tgccgatgct
    10921 gggcgggcca atctccacgg cgggtaacgt gctgtttatc gccgctacgg cagataacta
    10981 cctgcgcgct tacaacatga gcaacggtga aaaactgtgg cagggtcgtt taccagcggg
    11041 tggtcaggcg acgccaatga cctatgaagt gaatggtaag cagtatgtgg tgatctccgc
    11101 aggcggtcac ggttcatttg gtacgaagat gggcgactat attgtggctt atgccctgcc
    11161 ggatgatgtg aaataaccat aatgcccgga gagatccggg catatttccg aatacggtct
    11221 ttttataccg taaaccctaa catcatcccc gtatcttcat gctccagcag atggcagtgc
    11281 gccatataag catgttcttt cggtgcgtcg tgattaaact tcaccagcac ttcactgaca
    11341 ttgccttcta ccttaacggt atctttccag cccgcgcgat gagccgctgg cggtttgcca
    11401 ttttctgaca agatacggaa ctgcgtgccg tgaatatgga acggatgcag catcatgtcg
    11461 cccacgccag agataaccca acgttcgtac tgccctttcg ccgccgcaaa catcggctta
    11521 ttcatatcaa acgcctgacc gttgatttta ttggcatggt ggaaatcgaa cttcccgccg
    11581 tggttcatat gattcatatt accgtgcccc atatggccca tcatctggct gtgatccatt
    11641 ccggccatcg cctgatcgcc atatttctcc attagcatct gcatacccat catatcgagc
    11701 atcgggtcca tagaaagttg cagcttgcgt accgtcagcc cttccagcga aggtaacgca
    11761 ggcaggctac ttaatgtgtc tggcaaagca ccggaggcac taatagcaat cggctgaatc
    11821 cgcattaccg gatgcggctt gtcaaacggc gcaatcgcca tccccatctg gctgaccggt
    11881 agcgtcacca ggtcaaaggg tttgttgtcg ttaacctcca ccagcacttc aaaacgctcg
    11941 cccatcagca ccggcagctc gctcaccttc accggttcag gtagcagacc accgtcgctg
    12001 gcaatcacat acagcgggcg attgtcgctg gtggcgaaat tgagcgagcg ggcattacag
    12061 ccattgagca aacgcaggcg cagccaacca cgcggggcag cgtgttgtgg gtagattgca
    12121 ccgttggtca gcagcgtatc gccaaaccag cccacggcgg cggtcatcac atccagttga
    12181 taatcaatct gcccatcagc gttaaatttt ttatcctgaa caatcaccgg aacatcatcg
    12241 ataccccact gttttggcag cattaatttc aggatctcgt catcttcaat taccaccagc
    12301 ccagccaacc ccatcgccac ctgtcgccca gtcttgccat gttgatgtgg atggaaccag
    12361 caagtagcgg caggttgatc aacgttcaac gtcaccgagc gcttgccacc tggcggaata
    12421 attccctgcg ggccgccgtc gacttcaccc ggtacttcca gcccgtgcca gtgcaacgtc
    12481 gtctcttccg tcagttggtt atagatatca accgttaccg ctttgccgcg ctgtaatttc
    12541 accgccggcc ccagcagatt gccgttatag ccccaggtag ttgcagtttt ctcgccaaag
    12601 gtagactgac ctgcgccaat agttaactga atgcgattac gggcatcggt cgtgagcaaa
    12661 tcagggatcg gtaacgttgg gcgttccgcc gcaaagactg cgcggctcca cagcggcaag
    12721 gctgaagcca cacccagcgc gacggaatat tttaagaaat cacgacgttg catagttatt
    12781 tccttattct taagcaggcg aaacaaaatc aaacgttgag catagtcctt ccccttacgg
    12841 gaaggtcaag ccgcagacac aatttaatcg acaataatgg tcgtcgcctc gctcgcagtg
    12901 tgctaacgtt tatcttcttt aagcccctgg tagaagcaat gaagacgttt ttcagaacag
    12961 tgttattcgg cagcctgatg gccgtttgcg caaacagtta cgcgctcagc gagtctgaag
    13021 ccgaagatat ggccgattta acggcagttt ttgtctttct gaagaacgat tgtggttacc
    13081 agaacttacc taacgggcaa attcgtcgcg cactggtctt tttcgcccag caaaaccagt
    13141 gggatctcag taattacgac accttcgaca tgaaagccct cggtgaagac agctaccgcg
    13201 atctcagcgg cattggcatt cccgtcgcta aaaagtgcaa agccttggcc cgcgattcct
    13261 taagcctgct tgcctacgtc aaataatccc tgataccttt ttgtagaaat attgaccgtg
    13321 catccgcggt caatgttagc tattatgttg cgcccttttt ttacgggtgt taacaaagga
    13381 ggtatcaacc catggccgaa aaaaaacagt ggcatgaaac gctacacgac cagtttgggc
    13441 agtactttgc ggtagataac gttctgtatc atgaaaagac cgatcaccaa gatctgatca
    13501 tttttgagaa cgctgcattt ggtcgcgtaa tggcgctgga tggcgtagta caaaccaccg
    13561 agcgcgacga gtttatctat catgagatga tgacccatgt tccgctactg gcccacggtc
    13621 acgcgaaaca tgtgctgatt atcggcggcg gcgacggtgc catgctgcgt gaagtaaccc
    13681 gacataaaaa cgttgagtca atcacgatgg tagaaatcga tgcgggtgtc gtgtcgttct
    13741 gccgtcagta tctgcccaac cataacgccg gtagctacga cgatccgcgc tttaagctgg
    13801 tgatcgacga tggcgtcaat ttcgttaatc aaaccagcca gacctttgat gtcattatct
    13861 ccgactgcac cgatcctatc ggtcccggcg aaagtctgtt cacctcagca ttttatgaag
    13921 gctgcaaacg ttgcctgaat cctagcggta tcttcgtcgc acaaaacggc gtctgctttt
    13981 tacagcagga agaagccatc gacagccatc gcaaactcag ccattacttc agcgacgttg
    14041 gcttttatca ggcggcgatc ccgacctatt acggcggtat catgactttt gcatgggcga
    14101 cagataacga cgccttacgc catctctcaa ccgaaattat tcaggcgcgt tttctcgctt
    14161 ctggcctgaa atgccgttat tacaatccgg caatccatac ggcagctttt gccttacctc
    14221 agtatctgca agatgcactg gcttcacagc cgtcctaagg agaagataag aaattgaaaa
    14281 aactgaaact gcatggcttt aataatctga ccaaaagtct gagtttttgt atttacgata
    14341 tctgctacgc caaaactgcc gaagagcgcg acggttatat tgcttatatc gatgaactct
    14401 ataatgccaa ccgtctgacc gaaatcctgt cagaaacctg ttccattatc ggggccaata
    14461 ttcttaacat cgcccgccag gattacgaac cacagggtgc cagcgtcact attctggtga
    14521 gtgaagaacc ggttgacccg aaactcatcg acaaaacaga acaccccggc ccactgccag
    14581 aaacggtcgt tgcccatctc gataaaagtc atatttgcgt acatacctac ccggaaagcc
    14641 atcctgaagg tggtttatgt accttccgcg ccgatattga agtctctacc tgcggcgtga
    14701 tttctccgct gaaggcgctg aattacctga tccaccagct tgagtccgat atcgtaacca
    14761 ttgattatcg cgtgcgcggt tttacccgcg acattaacgg tatgaagcac tttatcgacc
    14821 atgagattaa ttcgattcag aactttatgt ctgacgatat gaaggcgctg tatgacatgg
    14881 tggatgtaaa cgtctatcag gaaaatatct tccataccaa gatgttgctt aaagagttcg
    14941 accttaagca ctacatgttc cacaccaaac cggaagattt aaccgacagc gagcgccagg
    15001 aaattaccgc tgcgctgtgg aaagaaatgc gcgagattta ttacgggcgc aatatgccag
    15061 ctgtttaacg gctctggcgg agctccaggc tccgccagat ttatttactt ctgctgcacg
    15121 aaattgcggt aagccgccac gacctgcaga aaatcctcaa cgccgcatag cgacaggctt
    15181 tcttcgtcgt agtagttcat cccctcttcc atttcatcgc cagcgaattc cagttgattg
    15241 gcgcgaacca tcacctcttc accgtccatc cacagggtgt attcatgccc tgcccgttgc
    15301 caggaccgtt cgctaccttt cagtgcgtgc gctgcttgtt ccacttcatc aagcaaggcc
    15361 aggttttctt tcacctcttc attaaaccag tgcccgacca cttcatgccc catggacata
    15421 cgcaccttta ccactccggt aatatcgcgc agaaattcgt aatccatagt gtgttcctct
    15481 gctcccggca atgcgccgaa atcgcattgc gccattgatg taattatcgc agccttaccg
    15541 gagaaaaaca gcggaacggc gatggtttag aaataaaaaa tgcccgggaa tctcattcac
    15601 cgggcattgt gtcgtttatg cgcagcgcgt gcgcttactt attacaccgc agtctggaaa
    15661 atcaccccat cggctttttc ggtgtactga gaaagttggt tgaagttcag ataacgataa
    15721 gtatcaacgg cagttttatc tacttgcgca acgtaggtct ggtactcttc cggcgtcggc
    15781 agtttgccaa tcagcgccgc aacagccgcc agttctgcag aagccaggaa gacattcgcg
    15841 ccagtcccca gacggttcgg gaagttacgg gtagaggtgg aaaccaccgt cgcaccgtct
    15901 gctacacgcg cctggttacc catacacaga gaacagcccg ggatctcgat acgagccccg
    15961 ctcttaccga agacgctgta gtagccttct tcagtcaact gtgcggcgtc catacgggtt
    16021 ggcggtgcca cccacaggcg ggtcggcaac tggcctttat gcgcatccag cagtttaccc
    16081 gcagcacgga agtgaccgat gttagtcatg caagaaccga taaatacttc gtcgatcttc
    16141 tcgccctgta ccgcagacag cggacgcgcg tcatccgggt cgttcggagc acacaggatt
    16201 ggctctttaa tatccgccag atcgatgtca atcactgccg cgtattccgc atctgcatct
    16261 gcttccagca gctcaggatt cgccagccat ttttccatgc cctgaatacg acgttccagg
    16321 gtacgacgat cgccgtaacc ttccgcgatc atccacttca gcaggacgat attagagtta
    16381 aggtattcga tgattggttc tttgttcagc ttgatagtac aaccagcggc agaacgctca
    16441 gcggacgcat cggtaagctc aaaggcctgc tcaactttca gatccggcag accttcaatt
    16501 tccagaatgc ggccagagaa gatgtttttc ttgcctttct tctcaacggt cagcagacct
    16561 tgtttgatgg catacagcgg aatggcgtgt accagatcgc gcagggtgat gcccggctgc
    16621 attttgcctt tgaagcgcac cagaacggat tccggcatat ccagcggcat tacgcctgtt
    16681 gcggctgcaa atgccaccag accagaaccc gccgggaaag agataccgat cgggaaacgg
    16741 gtatgggagt cacctccggt accgacggta tccggcagca gcatacggtt cagccaggag
    16801 tggattacgc cgtcacccgg acgcagcgac acaccgccac ggttcataat gaagtccggc
    16861 agcgtgtggt gcgtgttcac gtcaactggc ttcggatacg ccgcggtgtg gcagaaagac
    16921 tgcatcacca ggtcagccga gaagcccagg cacgccaggt ctttcagttc atcacgggtc
    16981 atcgggccgg tagtgtcctg tgaacctaca gaagtcattt tcggttcgca gtacgcgccc
    17041 ggacgaatgc ctttcacgcc acaggcacgg cctaccattt tctgcgccag cgagaagccg
    17101 cgatcgctct cagcgacatc tttcgcctga cggaacacat cactgtgcgg cagaccaagt
    17161 gcttcacgcg ctttggtggt caggccacgc ccgataatca gcgggatacg gccgccagca
    17221 cgcacttcat caatcagcac gtcggttttc agttcgaagg tcgccagcag ttcgcctgtt
    17281 tcgtggttac gcacttcacc tttgtacggg taaacgtcaa tcacgtcgcc catgttcagg
    17341 ttagagacgt cgacttcgat tggcagtgca cccgcgtctt ccatcgtgtt aaagaagatg
    17401 ggtgcaattt taccgccgag gcacaaacca ccgccgcgtt tgttcggcac atgtggaata
    17461 tcatcgccca taaaccacag aacggagttc gtggcggatt tacgcgatga acccgtaccc
    17521 acaacgtcac cgacgtacgc cagcgggaaa cctttctgtt gcagagcttc aatctgtttg
    17581 atcgggccaa caacacctgg ctggtctggc tcaatacctt cacgggcgtt tttcagcatc
    17641 gccagcgcgt gcagtgggat atccgggcgc gaccacgcat ccggtgccgg agaaaggtca
    17701 tcggtgttgg tttcgccagt gactttgaag acggtaacgg tcagtttttc agccagcgcc
    17761 gggcgattca gaaaccattc ggcatccgcc caggactgca ttacctgctt cgcatattcg
    17821 ttgcctgctt tcgctttctc ttctacgtca tagaagttat cgaacatcag cagtgtgtga
    17881 gaaagtgctt tggcagcgat cggtgccagt ttggcatcat ccagcgcgtc gatcagcgga
    17941 tgaatgttgt aaccaccctg catggtgccc agcagttcga tggctttttc cggagtcagc
    18001 agaggggatt tggcttcgcc tttcgcgata gcagccagga agcctgcttt gacataggcg
    18061 gcttcatcga cgccaggggg aacacggttg gttaacagat ctaacaggaa ttcttcttcg
    18121 cccgcgggcg ggtttttcag cagctctaca agtgcggcca tttggtttgc atccaggggt
    18181 ttgggcgcaa tcccctcagc ggcacgctca gctacgtgct tacggtattc ttctagcacg
    18241 acggttctcc tcgctctcat tgtcatagtg cggcaggcga ttctcttcac gctcctgtga
    18301 gacagcagtt tgtagggtaa atgcccagta ccgcaacggg cagaatagca ggattttgac
    18361 gacgtgttaa tctgtttaca aaaaagcaac ataaaaaagt ggctgaatcg ttaaggatgg
    18421 tctagagatt gtttccctcc gtaaaaactt cgttaattcg catggtgata atcacctttc
    18481 tcaacgaatc ccaagattag tcaaaattta aactaccgcc tctttatact cggattaaca
    18541 gcacctgcgg gtggcagttc gccgaccatt gcgatttcct tgagatccga attatgaaaa
    18601 tgactttgcc gtttaaaccc catgtgctgg cactaatttg cagtgccggg ctttgtgccg
    18661 cctctgccgg gctatatata aaaagccgca cagtggaagc ggctgtggaa acgcaatcga
    18721 cacaactggc tgtgtctgac gctgccgcgg ttacgcttcc tgcaacggtt tccgcgcctc
    18781 ccgtaacacc cgccgtcgtt aaatccgcat tcagcactgc acaaatagat caatgggtcg
    18841 cgcccgtcgc gctgtatccc gacgccctac tttcgcaggt gctgatggca tcaacctatc
    18901 cggcaaacgt tgctcaagca gtgcaatggt cgcacgataa tccacttaaa caaggcgatg
    18961 ctgctattca ggcggtatct gaccagccgt gggacgccag cgttaaatca ctggtggcct
    19021 ttccacaatt gatggcattg atgggcgaaa acccgcaatg ggtgcaaaac ctgggcgatg
    19081 cttttctggc gcagccgcag gacgtgatgg actcggtaca gcgattgcgg caactggcgc
    19141 aacaaaccgg ttcgctgaag tcatcaaacg aacaaaaagt tattaccaca acgaagaaag
    19201 ctgtaccggt aaaacagaca gtcacggcac ccgtcatacc atccaatacc gttttaactg
    19261 ccagccccgt cattacagag cctgcaacaa ccgtcatttc cattgagccc gccaatcctg
    19321 atgtggtcta tattcccaac tacaacccaa ccgtggttta cgggaactgg gccaatactg
    19381 cgtatccgcc ggtttatctg ccaccaccag ccggagaacc gtttattgac agctttgtgc
    19441 gcggattcgg ctatagcatg ggtgttgcta ccacgtacgc actattcagc agcatcgact
    19501 gggatgacga cgatcatgac catcatcatc atgacgatga tgattatcat caccacgatg
    19561 gcggtcatcg tgacggtaat ggctggcaac acaacggcga caacatcaat atcgacgtca
    19621 acaatttcaa ccgtatcacc ggtgagcatc ttactgataa gaatatggca tggcggcaca
    19681 atccaaacta ccgtaatggt gtgccctatc atgatcagga tatggcaaag cggtttcatc
    19741 aaaccgatgt caacggcgga atgagtgcca cgcagctacc tgctccaaca cgcgacagcc
    19801 agcgtcaggc ggcagcaagt cagtttcagc aacgaacaca cgccgccccc gtcattacac
    19861 gagataccca acgtcaggca gcggcacagc ggtttaatga agctgaacac tatgggagct
    19921 atgacgactt ccgcgacttc agccgtcgcc aacccctgac ccagcaacaa aaggacgccg
    19981 ctcgtcagcg ttatcagtca gcttctcctg agcagcgcca ggcagttcgc gagagaatgc
    20041 agactaaccc gcagatccag cagcgaagag aggcagcgcg tgagcgcatt cagcccgcct
    20101 cgcctgagca gcgccaggca gtccgcgaga aaatgcagac taacccacag atccagcagc
    20161 gaagagacgc agcgcgtgag cgtattcagt cagcctcgcc tgagcagcgc caggtgttta
    20221 aggaaaaagt acagcagcgc ccactgaacc aacagcaacg tgataacgcc cgccagcgtg
    20281 ttcaatcagc atcacctgaa caacgtcagg tttttcggga gagagttcag gagagccgcc
    20341 cacaacgtct aaacgacagt aaccgtactg ccagattgaa taacgatcaa cggtcagcag
    20401 tacgcgaacg tctctctgag cgcggagcaa ggcgactgga aaggtaaatt acagacgtaa
    20461 aaaaagcggc gtggttagcc gcttttttaa ttgccggatg ttccggcaaa cgaaaaatta
    20521 cttcttcttc gctttcgggt tcggcaggtc ggtaatgcta ccttcgaaca cttctgccgc
    20581 caggcccaca gactcgtgca gagtcgggtg cgcatggatg gtcagcgcga tgtcttcagc
    20641 gtcacaaccc atttcgattg ccaggccgat ttcacccagc agctcgccgc cgttggtacc
    20701 gacaatcgca ccaccgatca cacggtgaga ttctttgtcg aaaatcagct tggtcatacc
    20761 gtctgcgcag tcggaagcga tagcacgacc agaagcagcc cacgggaagg tggcggtttc
    20821 atagctgatg cctttctctt tcgcttcttt ctcagtcaga cctacccatg caacttctgg
    20881 ttcggtatag gcgatagacg ggataacttt cggatcgaag tagtgttttt taccggcgat
    20941 aacttcagcg gcaacgtgac cttcgtgaac acctttgtgt gccagcatcg gctgaccaac
    21001 gatatcgccg atagcaaaga tgtgcggtac gttggtacgc agctgtttgt caacgcggat
    21061 gaaaccacgg tcgtccactt ccacgccagc tttgcctgcg tcgaggtttt taccgttcgg
    21121 cacacgacca atcgctacca gcacggcgtc gtaacgctgc ggttcagcgg gtgctttttt
    21181 gccttccatc gtcacataaa taccgtcttc tttcgcttca acggcggtaa ctttggtttc
    21241 cagcatcagg ttgaatttct tgctgatacg cttggtgaag actttaacga tgtctttgtc
    21301 agctgccggg ataacctggt cgaacatttc aaccacgtca atctgtgaac ccagcgcgtg
    21361 gtatacggtg cccatttcca gaccgatgat accgccaccc attaccagca ggcgttctgg
    21421 tacttctttc agttccagcg cgtcagtgga gtcccagata cgcggatctt catgcggaat
    21481 aaacggcagt tggatcgggc gagaacccgc tgcaatgatc gcgttgtcga agttgatcac
    21541 ggttttaccg ttctcacctt caacttccag ggtgttagcc ccggtaaatt tacccagacc
    21601 gttgaccact ttgactttgc ggcctttcgc cataccagcc agaccaccgg tcagctgatt
    21661 gatcactttc tctttccagg tacgaatctt gtcaatatcg gttttcggtt cgccgaagac
    21721 gataccgtgt tcagccagcg ctttggcttc ttcgataact tttgctacgt gcagcagtgc
    21781 tttagaaggg atacagccga cgttcaggca aacaccgcca agggtgttgt aacgttctac
    21841 gattacggtt tccagaccta aatcagcgca acggaaggca gcggagtaac ctgcggggcc
    21901 tgccccaagt accacgacct gagttttgat ttcagtactc atcatgacct ctatatattt
    21961 atctccggcg gtcatacccg tcgtctttca ggccgcagcg gcgttagctt cacgccctca
    22021 ccccagtcac ttacttatgt aagcccctgg ggattctggc gcttgctacc ttgctgcacc
    22081 cagaaatcca tagggtatgt gaagtaatac cctaaccacc accgggtcgt tctatccgtc
    22141 ggtattttac aaaattgtta acaattttta aacaacaaac ggcaaccgat ttgtctattc
    22201 gctaataacc tcaatacatt catgagatta ccagaaaaaa gccggccgtt gggccggctc
    22261 ttttacttac atcaccagac ggcgaatgtc agacagcgtg ttgttaatga tggtaatgaa
    22321 acgggcacca tcagcaccgt cgatcacgcg gtggtcgaag gagagagaaa tcggcagcat
    22381 cagacgcggc acgaactctt taccattcca caccggctcc atcgcggact tggaaacgcc
    22441 gaggatagcc acttccggcg cgttcacaat cggcgcgaag tgggtagtac ccaggccgcc
    22501 gatgctggag atggtgaagc aaccgccctg catttcgccc gcagtcagct taccgtcacg
    22561 cgctttctta gaaatagtca tcagctcgcg agacagctcg atgatgcctt tcttgttgac
    22621 gtctttgaat accggaacaa ccagaccgtt cggggtatcc accgccacac cgatgttgat
    22681 gtatttcttc agggtcagac gctgaccgtc ttccgacagc gaactattga agcgaggcat
    22741 ctgctcaaga gctgcagcaa cggctttcat gatgaagaca accggggtga tcttcacatc
    22801 cagcttacgt ttcgccgctt cttcgttctg ctgtttacgg aacgcttcca gctcggtgat
    22861 atcggttttg tcgaagtggg taacatgcgg gatcatcacc cagttacggc tcaggttagc
    22921 accagaaatt ttctggatac ggcccagttc cacttcttcg atttcaccaa acttgctgaa
    22981 gtccaccttc ggccacggca gcatgcctgg gataccgccg ccagtcgccg ccggagctgc
    23041 ttctgcacgt ttgatagctt ctttcacgta agcctgaacg tcttcgcgca ggatacgacc
    23101 tttacggcca gtgcccttca ctttcgccag gttaacacca aactcgcgtg ccagacggcg
    23161 gatcagcgga gtcgcgtgaa cataagcgtc gttttcagca aattcagatt tgccttccgc
    23221 tttcgcagct ggtgctgctg ccggggcttc agcttttgct gccggtgccg gcgctgccgc
    23281 ttcctgtttc gcaggagctg ccgcaggcgc tgcgccttca acttcgaaga tcataatcag
    23341 cgagccagtt ttcactttat cgccaacgtt gactttcagt tccttcacga cgcctgcaaa
    23401 cggcgccgga acttccatag aagctttgtc gccttctacg gtgatcagtg actgttcagc
    23461 ggcaactttg tcgcccactt tcaccatcac ttcagtcact tcaacttcgt caccgccgat
    23521 atccggaacg ttaacttctt tcacgccagc tgctggtgca ggggccgctg ccggagccgc
    23581 ttcctgttta gccgccggag ctgccgcgcc tgcttcaccc gcgacttcga agaccataat
    23641 cagcgagccg gtagacactt tgtcacccac gttcactttg atctctttca cggtgccagc
    23701 aaacggagcc ggaacttcca tagaagcttt atcgccttct acggtgatca gcgactgttc
    23761 agcttcaact ttatcgccaa ctttcaccag gatttcggtc acttcaactt cgtcgctgcc
    23821 gatatccgga acgttaacgt cttttgccgc cgcagccgcg ggtgctgctg ccggagctgc
    23881 ttctttcttc tcttctgcct gagcaggtgc agcgtctgct gcaccgtcgg cggaatcgaa
    23941 aatcataatc agtgcgccgg tctgggtttt atcgccaaca gagactttga tctctttaac
    24001 gatacccgcc tgcggagacg gaacttccat agaggctttg tcgccttcta cggtgatcag
    24061 cgactgttcg gcttcaactt tgtcgcccac tttgaccagg atctcggtga tttcaacttc
    24121 atcagccccg atgtccggta ctttgatttc gatagccatt attcttttac ctcttacgcc
    24181 agacgcgggt taactttatc tgcatcgatg ttgaatttgg cgattgcgtc agcaaccact
    24241 ttcttatcga tttcgccacg tttagccagt tcgcccagcg ccgcaaccac gacataagaa
    24301 gcatcaactt cgaagtggtg acgcaggttc tcacggctgt cggaacgacc gaagccatca
    24361 gtacccagta cgcggtagtc gtcagccggt acgtaagtac ggacctgctc agcgaacagt
    24421 ttcatatagt cggtagatgc cactgccgga gcgtcgttca tcacctgagc gatatacgga
    24481 acgcgcggag tttccagcgg atgaagcatg ttccagcgtt cacaatcctg accatcacgc
    24541 gccagctcgg tgaaggaggt cacgctataa acgtcagaac ctacgccgta atctttcgcc
    24601 aggatctctg ccgcttcacg gacgtgacgc aggatagaac cggagcccag cagctgaact
    24661 ttacctttgc taccttcaat ggtttcgagt ttgtagatac ctttacggat accttcctca
    24721 gcaccttccg gcattgccgg catgtggtag ttttcgttca gcgtggtgat gtagtagtaa
    24781 acgttctctt gtttttcacc gtacatacgc tccagaccgt catgcataat gacagcaact
    24841 tcgtaagcgt aagccgggtc gtaagagata cagttcggaa tagtcagcga ctgaatgtgg
    24901 ctgtgaccat cttcatgctg cagaccttct ccgttcaggg tggtacgacc ggaagtaccg
    24961 ccgatcagga agccacgcgc ttgctggtcg ccagccgccc agcacagatc gccaatacgc
    25021 tggaagccga acatcgagta atagatgtag aacgggatca tcggcagatt gttggtgctg
    25081 taagaggtcg ccgctgccag ccaggaacaa cctgcgccca gctcgttgat cccttcctgc
    25141 agaatctgac ctttctcgtc ttctttatag taagcaacct gctcgcggtc ctgcggggtg
    25201 tactgctgac cgttcgggct gtaaatacca atctgacgga acagaccttc cataccgaaa
    25261 gtacgcgctt cgtcggcgat gatcggtacc agacgatctt tgatcgactt gttcttcagc
    25321 attacgttca gggcacgaac gaaagcgata gtggtagaga tctctttgct ctgctcttcc
    25381 agcagcgcgc cgaagtcttg caggctcggc agctcaagct tctcggtgaa gttcggctga
    25441 cggcttggca gataaccgtg cagtttctga cgctgtgcgt gcagataggt atgctcttca
    25501 gaaccttccg ggaaggtgat gtacggcagt ttttcgatat ctgcatcaga caccggcaca
    25561 ttgaaacggt cgcggatgtg acgcacgccg tccatgttca ttttcttaac ctggtgcgcg
    25621 atgtttttac cttcagccgc gtcgcccatg ccgtaacctt taatggaatg agcaaggatt
    25681 actgtcgctt tgcctttggt ttcctgcgct ttcttgaatg cagcgtagat tttcttcgga
    25741 tcgtgaccac cacggttcag tgcccagatc tgctcgtcag tccagtctgc aaccagtgct
    25801 gcggtttcag gatatttacc gaagaagtgt tcacgaacgt acgcaccatc tttcgatttg
    25861 aaggtctggt agtcgccgtc aacggtttcg ttcatcagct ggatcagttt accgctggta
    25921 tctttacgca gcagttcatc ccaacggcta ccccacatca ctttgatcac gttccagcca
    25981 gcaccttcga agatgccttc cagttcgttg atgatcttgc cgttaccggt gaccgggccg
    26041 tcaagacgct gcaggttaca gttgataacg aagaccaggt tatccagttt ttcacgggta
    26101 gcgatggtga tcgcaccttt ggattccggt tcgtccattt caccgtcgcc gaggaacgcg
    26161 taaacggtct gtttagaggt atctttcagg ccacggtgtt ccagatattt caggaattta
    26221 gcctggtaaa tagcaccaat cggccccagc cccatagata cggtcgggaa ctgccagaat
    26281 tccggcatca gtttcgggtg cggataggaa gagaggccat tgccgtgaac ttcctgacgg
    26341 aagttatcca gctgctcctg agtcagacga ccttccagga aagcacgagc gtacacgccc
    26401 ggggagatgt ggccctggaa gtaaaccagg tcgccgccat cctgctcgtt gcgtgcacgg
    26461 aagaagtggt taaagcacac atcataaatg gttgcggaag actggaagga cgccatatgg
    26521 ccgcccagtt cgaggtcttt tttcgacgca cgcagcaccg tcatgatggc gttccagcgg
    26581 atagctgaac gaatacggcg ttccagttcc agattacccg gatactccgg ttgttcttca
    26641 acggggatgg tgttgatgta gttgctgata cctgtgcctg cggctacgtt tacaccgcct
    26701 ttgcgggctt cagcaagcag ttggtcgatc agatactgag cacgctcaac accttcttca
    26761 cggatgaccg attcgatcgc ctggagccag tcgcgagttt cgatcggatc cacgtcattt
    26821 gggaaacgtt ctgacatggg ttattcctta tctatctaat aacgttgagt tttctggaac
    26881 ctgtcccatt gaactctcgc cggaaagctc aataagacag gttctacgtt tagttgccgc
    26941 gcttttatat gcgcttgatt tacaacatct tctggataat ttttaccagt aaaatcacta
    27001 attctttcgt tgctccagac gacgcagaga acgctcacgg cggctctctt cacgacttct
    27061 gtcgagcaaa atttcttcga taaaggccag atggcgatgc gatgcttcgc gcgcttcttc
    27121 cggcttaccg gccataatcg cttcaaatat gcgggtgcgg tgactactca ccagcggcag
    27181 catctcgcga cgcgaataga gcaattcgaa gttctggcgg acattctggg ccaacatcgg
    27241 ctccatacac cttagcagat gaagcagaac cacattgtgg gccgcttcag tgacagcaat
    27301 ctgatactgg agtacggcgt ttgattccgc gtccagatcg ccagactgct gcgccagttc
    27361 tatggcgtga tggagttcac ggatgcgttc cttgtcttca tcggtactac gcagcgcggc
    27421 gtaataagcg gcgatacctt ccagggcgtg tcgtgtttcg agcaagtcat actgtgactc
    27481 aggatggtcg gagagcagct ccaccagcgg atcgctgaag ctttgccata ggctgctctg
    27541 gacaaaagtg ccgccaccct ggcgacgaag caacaagccc ttcgcttcga gacgttgaat
    27601 cgcctcacgc aaggagggac gggagacgtc aaactgtttt gccagttcgc gttccggtgg
    27661 gagtttttcg cccgggcgga gagtgccttc gaggatcaaa aactccagtt gctgctcaat
    27721 cacatcggag agttttggtt ggcggatttt gctgtaggcc atgagttcct gtcttaagcc
    27781 acttgctgaa gtcaattggt cttaccaatt tcatgtctgt gacgctaaag taacaaagta
    27841 ttcaccttat gtccatacag gttttgattg aaatcatgaa actgtgcaca ttttaacaac
    27901 ttgacatata taacgtttca aagttgtaac tatgcacaaa tgtagacttt acgtaggaaa
    27961 gggatttttt aacgattatt aaactataaa aatccgaatt gaaccgattc acttaccaat
    28021 tttgtgattt ttaattcaat taaaacgaat ttaaattcat tctacatatt gagaggggtt
    28081 gaggctgagc tttacaaacg gtttcttttt aagcaactca tcttcaacca tgcataaagc
    28141 gggtgcattc gctgccgcat accattattc ttgatctgac ggaagtcttt ttgtaacaat
    28201 tcaaacttct ttgatgtaaa caaattaata caacaaacgg aattgcaaac ttacacacgc
    28261 atcactgcgt agatcaaaaa aacaaccacc gcacgaggtt tcatgatgga aggtcaacag
    28321 cacggcgagc agctaaaacg cggccttaaa aaccgccata ttcagcttat cgcgctgggt
    28381 ggcgcgatag ggaccgggtt attcctgggt agcgcctccg taatacagtc cgcagggcca
    28441 gggattatcc tgggttacgc cattgctggt tttatcgcct ttctgatcat gcgtcagctg
    28501 ggtgaaatgg tggtcgaaga acctgtcgca ggctccttta gccactttgc ttataaatac
    28561 tggggcagtt ttgccggttt cgcctctggc tggaactact gggtactgta cgttttagtt
    28621 gccatggctg agctgactgc cgtgggtaaa tacattcagt tctggtatcc ggaaatcccc
    28681 acctgggttt ctgccgccgt attctttgtg gtgattaacg ccatcaacct gaccaacgtt
    28741 aaagtgtttg gcgagatgga gttctggttt gccattatca aagttatcgc tgtggtagcg
    28801 atgatcatct tcggcggctg gctgctattc agtggcaaca gcggcccgca ggcgaccgtt
    28861 agcaacctgt gggatcaggg tggtttcctg ccgcacggct tcaccgggct ggtgatgatg
    28921 atggcaatta tcatgttctc gttcggtggt ctggaactgg tggggatcac cgcagcagaa
    28981 gctgataacc cggagcaaag tataccgaaa gcaactaacc aggttatcta ccgcatcctg
    29041 attttctata ttggttcgtt agccgttctg ctctcactga tgccgtggac ccgcgttacc
    29101 gccgatacca gtccgtttgt gctgatcttc cacgagttag gcgatacctt tgtggcgaat
    29161 gcgctgaaca tcgtggtact gactgcggcg ctctccgtgt acaacagctg cgtatattgc
    29221 aacagccgta tgctgtttgg tctggcacaa cagggtaatg cgccaaaagc gctggcgtct
    29281 gtcgataaac gtggtgtacc agtaaatacc attctggtgt ctgcactggt aacggcgttg
    29341 tgcgtactga ttaactacct tgccccagag tccgctttcg gactgttaat ggcgctggtg
    29401 gtatctgcac tggtaatcaa ctgggcgatg attagcctgg cgcatatgaa attccgtcgc
    29461 gccaagcagg aacaaggcgt ggtaactcgc ttccctgctc tgctttatcc gctgggtaac
    29521 tggatctgcc tgctgtttat ggcggcggta ctggtgatta tgctgatgac cccaggaatg
    29581 gcgatttcgg tatacctgat cccggtatgg ctgatcgtgt taggtatcgg ctatctgttt
    29641 aaagagaaaa ccgccaaagc cgtaaaagcg cattaatctc tctacgccct cacccgtaca
    29701 gggtgagggc aataatcttt acaccaacgc cccgtaaatc gtcagtagtg caatcaccac
    29761 cacgaccacg aacgaggttt tcttcgccat tgaaaccgct gccttcggcg tctccacctt
    29821 atcgacatgc ggttcacgcg ccagagagaa ctgcgccaga cgcgttaaca cctgatactg
    29881 cgaagtatgg aagtcaccca gcgaagcaaa ccaggccggt aacgctttct ccccatgacc
    29941 gatcaaggca tataccacac ccgcaagacg aaccggcacc caatccagta catgaagcac
    30001 ggcatcaatg ccggactgta aacgatgatg cggcgtctgg tatcgcgcca gccagtattg
    30061 ccatgcacgc aaaaacgcat accccatcag cgtaacgggt ccccagattc cccccacaat
    30121 caaccagaac agcggagcaa gataaaaacg aaagttaatc cacagcaatg cattttgcag
    30181 ctcacgcaaa tactcacgtt catcgcagcc tgccgggacg ccgtgaatca tggtgagttc
    30241 gccagccatc gtgacacggg catggctatc attacgtgaa gcagctgtca gataagcatg
    30301 ataatgaaga cgaactttac ctgcgccaat acacagcaaa ccaatcagca gccacaccag
    30361 cagcgtggga acgttgaaca atactccctg caatgcgcgt aacagtaaaa aagtcacgcc
    30421 catcgcaata atggtcatgc ctaacgtgcg cccgagagaa aaatgtttca cccgccgaaa
    30481 gaacgcttca agacgatgat caagctgcca gtgctcgccc aacttaaaca ggcgctcgaa
    30541 aattaacacc agtaaggttg taaatagcgt catgttgtct ccttgctgac cagcgcacga
    30601 aaccgcgccc aatcaaatgc agggccggga tcggttttcc gatccggcgc aatatcacaa
    30661 tggcccgtca tgttattagc gatatctgga tagcgatcaa tcagtgcccg cgtaaccgcc
    30721 gcaagctgtt gatactgcgc atcggtatac gccagcgtat cggtgccttc aagctcaatc
    30781 ccaatagaaa aatcattgca gcgttcgcgc ccctgatact gagagactcc cgcatgccat
    30841 gcacgtttat cgaaaggaac atactggact atttcaccat cacggcgaat caaacagtga
    30901 gcggagacgc gcaaatgggc gatctcagca aagaaaggat gtgcctgcgg atcaatagtt
    30961 ccagtgaata atgcgtcgat ccacggaccg ccaaactcgc ctggcggcag gctaatattg
    31021 tgcaccacca gcagggtggg tgtttcgtca tccgggcggc aatcgtaatg tggtgaggga
    31081 acgcggcgcg cgccaaccag ccacccctgt tctaacaaca tgcaggatct ccttatatgt
    31141 ggtgctaata cccggttcag agtagcatgt ttctacctta tgattcgtta gctatctgga
    31201 gttttaacat gccgcctcgc cgctataacc ctgacacccg acgtgacgag ctgctggaac
    31261 gcattaatct cgatatcccc ggcgcggtgg cccaggcgct gcgggaagat ttaggcggaa
    31321 cagtcgatgc caacaatgac attacggcaa aacttttacc ggaaaactct cgctctcatg
    31381 ccacggtgat cacccgcgag aatggcgtat tttgcggcaa acgctgggtt gaagaggtgt
    31441 ttattcaact ggcaggcgac gatgtcacca taatctggca tgtggatgac ggcgatgtca
    31501 tcaacgccaa tcaacccttg ttcgaacttg aaggcccatc ccgcgtgctg ttaacgggcg
    31561 aacgcactgc gcttaatttt gtgcaaaccc tttcaggagt tgccagtaag gtacgccact
    31621 atgtcgaatt actggaaggc accaacacgc agttgttgga tacgcgcaaa accttacctg
    31681 gcctgcgttc agctctgaaa tacgcggtac tttgcggcgg cggagcgaat caccgtctgg
    31741 ggctttctga tgccttcctg atcaaagaaa atcatattat tgcctccggc tcagtgcgcc
    31801 aggccgtcga aaaagcgtcc tggctgcacc cggatgcgcc agtagaagtc gaagtagaga
    31861 atctggaaga acttgatgaa gccctgaaag caggagccga tatcatcatg ctggataact
    31921 tcgaaacaga acagatgcgc gaagccgtca aacgcaccaa cggcaaggcg ctactggaag
    31981 tgtctggcaa cgtcactgac aaaacactgc gcgaatttgc cgaaacgggc gtggacttta
    32041 tctccgtcgg tgcgctaact aaacacgtac aagcactcga cctttcaatg cgttttcgct
    32101 aattgctgac agatttatcc gctccatcgc gggcggataa tctccccttc cccaactttc
    32161 ttcgtaacgc ctcgcaaatt tcttgtcttt cgctgcaacg aaataaaaaa cctcggaagc
    32221 tgctttcccg tttcgttttt tgcccctcgc ttgtgctgat ggcgtttgcc aaagtagcgc
    32281 caaccaaatc aaggagcgaa acagatggac aagcaacgcg gttttacact tatcgaactg
    32341 atggtggtta ttggcatcat tgccatttta agcgccattg gtattcccgc ttatcaaaac
    32401 tacctgcgca aagctgcact caccgacatg ctacaaacct ttgtgcctta ccgtaccgcc
    32461 gtagagttgt gcgcgctgga acatggtgg
//
LOCUS       DAJVUP010000028        31371 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.028, whole genome shotgun sequence.
ACCESSION   DAJVUP010000028 DAJVUP010000000
VERSION     DAJVUP010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 31371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.028"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(15..3296)
                     /locus_tag="OQQ75_001221"
     CDS             complement(15..3296)
                     /locus_tag="OQQ75_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5107 domain-containing protein"
                     /protein_id="HCS1975619.1"
                     /translation="MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYG
                     VTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPA
                     LVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMT
                     GFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKR
                     AVSAFPIATGTYYKVDYSAGVDISCYKNVPVTTSYMAEKSQYDFVGAWCHDEDGGLLH
                     VANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEE
                     KRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCN
                     ALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQELPLLDVAKA
                     PLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNR
                     ADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGN
                     SKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARV
                     QREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTL
                     AAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESI
                     EECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELA
                     ARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLN
                     LWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDAREPQQASELL
                     HAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEAMRCLRLAATGDRTINIHS
                     YYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLL
                     SLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFI
                     FNYVH"
     gene            3414..4607
                     /locus_tag="OQQ75_001222"
     CDS             3414..4607
                     /locus_tag="OQQ75_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HCS1975620.1"
                     /translation="MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAV
                     SNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACL
                     SPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDRTINLALAIHGQVDPVTGVSQT
                     MPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIG
                     SSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLK
                     SQPVNTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL
                     YGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA
                     QLRQI"
     gene            complement(4671..5924)
                     /gene="glyA"
                     /locus_tag="OQQ75_001223"
     CDS             complement(4671..5924)
                     /gene="glyA"
                     /locus_tag="OQQ75_001223"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HCS1975621.1"
                     /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN
                     FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK
                     QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP
                     HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL
                     KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD
                     AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS
                     INDEAVIERIKGKVLDICARYPVYA"
     gene            6252..7442
                     /gene="hmpA"
                     /locus_tag="OQQ75_001224"
     CDS             6252..7442
                     /gene="hmpA"
                     /locus_tag="OQQ75_001224"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HCS1975622.1"
                     /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN
                     MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL
                     LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK
                     TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR
                     IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISSGVGQTPMLA
                     MLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK
                     GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIYYECFGP
                     HKVL"
     gene            complement(7487..7825)
                     /gene="glnB"
                     /locus_tag="OQQ75_001225"
     CDS             complement(7487..7825)
                     /gene="glnB"
                     /locus_tag="OQQ75_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HCS1975623.1"
                     /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE
                     LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI
                     RTGEEDDAAI"
     gene            complement(7886..9220)
                     /gene="glrR"
                     /locus_tag="OQQ75_001226"
     CDS             complement(7886..9220)
                     /gene="glrR"
                     /locus_tag="OQQ75_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator GlrR"
                     /protein_id="HCS1975624.1"
                     /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV
                     LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS
                     FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV
                     LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS
                     NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT
                     HRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR
                     AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV
                     EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE"
     gene            complement(9210..9923)
                     /gene="qseG"
                     /locus_tag="OQQ75_001227"
     CDS             complement(9210..9923)
                     /gene="qseG"
                     /locus_tag="OQQ75_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system QseEF-associated
                     lipoprotein QseG"
                     /protein_id="HCS1975625.1"
                     /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP
                     VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGCWQ
                     NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER
                     QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT
                     PHESEKPAPSTHEVTPDEP"
     gene            complement(10088..11515)
                     /gene="qseE"
                     /locus_tag="OQQ75_001228"
     CDS             complement(10088..11515)
                     /gene="qseE"
                     /locus_tag="OQQ75_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417051.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two component system sensor histidine kinase
                     QseE/GlrK"
                     /protein_id="HCS1975626.1"
                     /translation="MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQA
                     ALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHA
                     GVLPDDKLYQALRQDLNNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSR
                     GQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLG
                     NSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLA
                     DQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETV
                     VSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSS
                     HGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQG
                     ELYLVDESGQDVCFRIELPSSKNTK"
     gene            complement(12073..15960)
                     /gene="purL"
                     /locus_tag="OQQ75_001229"
                     /gene_synonym="purI"
     CDS             complement(12073..15960)
                     /gene="purL"
                     /locus_tag="OQQ75_001229"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HCS1975627.1"
                     /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN
                     APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ
                     VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFDLDDAEQLFAHHQPTPVTS
                     VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR
                     HKIFNADWIIDGEQQPKSLFRMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE
                     TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG
                     FSVSNLRILGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY
                     EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG
                     GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL
                     SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL
                     CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD
                     ALVREGITIADAVKRILHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV
                     TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW
                     MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL
                     SLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD
                     VRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGINADIASLGD
                     DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT
                     VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA
                     APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHAL
                     VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE
                     LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR
                     DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE
                     RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG"
     gene            16220..17776
                     /gene="mltF"
                     /locus_tag="OQQ75_001230"
     CDS             16220..17776
                     /gene="mltF"
                     /locus_tag="OQQ75_001230"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417053.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HCS1975628.1"
                     /translation="MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGE
                     LRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNA
                     DLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLCNLTAEQLTVAPGHVV
                     VNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELA
                     VALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVD
                     TRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLT
                     KNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHML
                     DARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS
                     LVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLF
                     SRKGSEEKQN"
     gene            complement(17773..18309)
                     /gene="tadA"
                     /locus_tag="OQQ75_001231"
     CDS             complement(17773..18309)
                     /gene="tadA"
                     /locus_tag="OQQ75_001231"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HCS1975629.1"
                     /translation="MRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAV
                     LVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCA
                     GAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF
                     RMRRQEIKAQKKAQSSTD"
     gene            complement(18334..18969)
                     /gene="yfhb"
                     /locus_tag="OQQ75_001232"
     CDS             complement(18334..18969)
                     /gene="yfhb"
                     /locus_tag="OQQ75_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase C"
                     /protein_id="HCS1975630.1"
                     /translation="MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL
                     LPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQE
                     RLTTYLLSSDADIWLITGSPQPLVEAVYFDKPWLPRVNLIASQIQRGYGGWVLTMRCL
                     GHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE"
     gene            19178..20026
                     /locus_tag="OQQ75_001233"
     CDS             19178..20026
                     /locus_tag="OQQ75_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417056.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HCS1975631.1"
                     /translation="MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEA
                     GVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKL
                     IKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
                     AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPN
                     ALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
                     LVKKLV"
     gene            20082..20342
                     /gene="yfhL"
                     /locus_tag="OQQ75_001234"
     CDS             20082..20342
                     /gene="yfhL"
                     /locus_tag="OQQ75_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster ferredoxin YfhL"
                     /protein_id="HCS1975632.1"
                     /translation="MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH
                     YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI"
     gene            complement(20536..20616)
                     /gene="shoB"
                     /locus_tag="OQQ75_001235"
     CDS             complement(20536..20616)
                     /gene="shoB"
                     /locus_tag="OQQ75_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin ShoB"
                     /protein_id="HCS1975633.1"
                     /translation="MTDCRYLIKRVIKIIIAVLQLILLFL"
     gene            complement(21036..21416)
                     /locus_tag="OQQ75_001236"
     CDS             complement(21036..21416)
                     /locus_tag="OQQ75_001236"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HCS1975634.1"
                     /translation="MAILGLGTDIVEIARIEAVIARSGERLARRVLSDNEWAIWKTHH
                     QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL
                     GVVNMHVTLADERHYACATVIIES"
     gene            complement(21416..22147)
                     /gene="pdxJ"
                     /locus_tag="OQQ75_001237"
     CDS             complement(21416..22147)
                     /gene="pdxJ"
                     /locus_tag="OQQ75_001237"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HCS1975635.1"
                     /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV
                     HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT
                     TEGGLDVAGQREKMRDACKRLTDAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA
                     DAKTDAEQAQELVRIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI
                     IGRAVMTGLKDAVAEMKRLMLEARG"
     gene            complement(22159..22887)
                     /gene="recO"
                     /locus_tag="OQQ75_001238"
     CDS             complement(22159..22887)
                     /gene="recO"
                     /locus_tag="OQQ75_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HCS1975636.1"
                     /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS
                     TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY
                     ETRFSELFFDYLHCIQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDD
                     TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG
                     GKPLKSRELFRQFMPKRTVKTHYE"
     gene            complement(22899..23804)
                     /gene="era"
                     /locus_tag="OQQ75_001239"
     CDS             complement(22899..23804)
                     /gene="era"
                     /locus_tag="OQQ75_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HCS1975637.1"
                     /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR
                     HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT
                     PDDEMVLNKLRDGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL
                     NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI
                     ERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE
                     LWVKVKSGWADDERALRSLGYVDDL"
     gene            complement(23801..24481)
                     /gene="rnc"
                     /locus_tag="OQQ75_001240"
     CDS             complement(23801..24481)
                     /gene="rnc"
                     /locus_tag="OQQ75_001240"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004248457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HCS1975638.1"
                     /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG
                     DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK
                     SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL
                     QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ
                     ALKKLELE"
     gene            complement(24754..25728)
                     /gene="lepB"
                     /locus_tag="OQQ75_001241"
     CDS             complement(24754..25728)
                     /gene="lepB"
                     /locus_tag="OQQ75_001241"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HCS1975639.1"
                     /translation="MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGD
                     SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI
                     LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP
                     VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK
                     ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR
                     DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH"
     gene            complement(25744..27543)
                     /gene="lepA"
                     /locus_tag="OQQ75_001242"
     CDS             complement(25744..27543)
                     /gene="lepA"
                     /locus_tag="OQQ75_001242"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HCS1975640.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
                     CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR
                     KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL
                     ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA
                     VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV
                     VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG
                     RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ
                     KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK"
     gene            complement(27741..28220)
                     /gene="rseC"
                     /locus_tag="OQQ75_001243"
     CDS             complement(27741..28220)
                     /gene="rseC"
                     /locus_tag="OQQ75_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR-reducing system protein RseC"
                     /protein_id="HCS1975641.1"
                     /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG
                     PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS
                     DVAALCGAVLGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ"
     gene            complement(28217..29173)
                     /gene="rseB"
                     /locus_tag="OQQ75_001244"
     CDS             complement(28217..29173)
                     /gene="rseB"
                     /locus_tag="OQQ75_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor regulatory protein RseB"
                     /protein_id="HCS1975642.1"
                     /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE
                     LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGDEISYFEPGLEPFTL
                     NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
                     DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA
                     KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM
                     LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ"
     gene            complement(29173..29823)
                     /gene="rseA"
                     /locus_tag="OQQ75_001245"
     CDS             complement(29173..29823)
                     /gene="rseA"
                     /locus_tag="OQQ75_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-E factor RseA"
                     /protein_id="HCS1975643.1"
                     /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR
                     GDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT
                     QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN
                     GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ"
     gene            complement(29856..30431)
                     /gene="rpoE"
                     /locus_tag="OQQ75_001246"
     CDS             complement(29856..30431)
                     /gene="rpoE"
                     /locus_tag="OQQ75_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HCS1975644.1"
                     /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG
                     DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE
                     AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA
                     AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR"
     gene            complement(30428..30583)
                     /gene="rseD"
                     /locus_tag="OQQ75_001247"
     CDS             complement(30428..30583)
                     /gene="rseD"
                     /locus_tag="OQQ75_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rpoE leader peptide RseD"
                     /protein_id="HCS1975645.1"
                     /translation="MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFG
                     LGRLYLG"
     gene            30839..>31371
                     /locus_tag="OQQ75_001248"
     CDS             30839..>31371
                     /locus_tag="OQQ75_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1975646.1"
                     /translation="MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG
                     STFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGV
                     LFDTHVQPNGEESYHLTREGGHSHRRILHAADATGREVQSTLVSKAQNHPNIRVLERS
                     NAVDLIVSDKIGLPGTRR"
BASE COUNT         7502 a         8402 c         7918 g         7549 t
ORIGIN      
        1 acagttaata gggtttagtg aacgtagtta aaaataaaag gcatcacagt ggtgaataat
       61 gccgctttcg gccaggccgg attaatcgcc gtcaattcag cgcgagcaga ctcatattgc
      121 gcaacctccc cgagtcccgc ggacgccagc atcgccacca tcaggcattt ttctttatgc
      181 tgctgttgta aatcgccata cagcgataac aggtcaggtt gtgaaacagc aaagaaatcc
      241 gcctcaatac tggttttcgc catctcttgc gcccactgtt tcatttcact aaacagttgc
      301 tgtgcggttt gctgttcacc cagcagtcgc agcgccattc cttgccagaa gagataatca
      361 accggctgat cgttgtaata actgtggatg ttaatggtgc gatcgccggt cgccgccaga
      421 cgtaaacaac gcatcgcttc agtttcatcg ccctgcgcgt tggcgcatat cgcctgccag
      481 aaccagatgt cgttatcagt ttgccccggt aaacggcctt cgcttaaatt ctccggataa
      541 tgcagcgcgg catgaagcag ttcgctggcc tgctgcggct ctctggcatc aagatgctgc
      601 caggcgcgta ataactggtt gaggataaac tgactggtga ccttcccttc cccgccttcc
      661 cacgggtgga atttacgcgt ggcgagaatg tccgccgctt tgtctgcctg acccgtgaga
      721 tgccacaaat tgagcagttc tgcggtcatg tcgtcgcgtt tcagcgcaat ttccagatta
      781 ttttccagac gcgccagtcg tttctccggt gtggctccac ttaacttatc aagcaaatcc
      841 cgttcgaaaa gcagacgtgc atcctgcggc gcaagctgat aagcattatc aagataacgc
      901 gcggccagct cataatcgtg ttgcttattc cacgcatgga tcgctaaccc gcgccagccg
      961 tcggcaaact ccggcgacat ctctacgcaa cgttgccaaa aggcaatggc tttgttgtag
     1021 ctacgtttgt tgtagtagaa gcaggccagt aaatggcgag caaaccagca ctcttcaata
     1081 ctctccagcg ccgccacttc ttccagcgta ttcgggaaac ggacaaactg cgggaagaca
     1141 tcaatggctt ttgcgaccag ttcgccacgt tcggctttcg gcagcaagct ggcttgcagg
     1201 taaagcggca gcgtgcgctg gcagtccagt gcgttcagca tctctgccgc cagggtgggc
     1261 attccccagt taatcagttg cccggcggtc atcagggcgt taacgtcgcg tccctgacac
     1321 agaccgcgcc actgcgcgag agctgattcg ctacgaccat cgaaccagtt cagccaccac
     1381 agagtggcgt tcagcggata atcgcgcagc agtttctcgc gctgcacacg cgcgttgtcc
     1441 tgacgaccac ttaacaccag cagcagatta tgcaggcaaa gcacttcctg attggttggg
     1501 caggcgcgaa gactttgttg gcaaaaatcc agaccagcgt cgaagttacc attacgcgcc
     1561 gccagtcgtg ccaggccata atagccaccg gctttgctgt tgccgctcca gaccgcacgc
     1621 cagaaatcct cttcggcttg ttgatattgt ccctgacgtt cgtaagcact ggcgcgaatc
     1681 aaactcgcct gtccgcactg cggatttttg ttcagcgcat gtgcgcgttt cagagcctga
     1741 gtggcatacg ccaccgcttg cgggaaatcg gcgcggttat attccagcat cgccagcgcc
     1801 aggttacagc ggtaatccag cggatccagc gccacgccgc gcaggtagta atcgaacggt
     1861 gaacggctgg cgtgatgata ttgctccaga tgctgaccga taaaccaggc ttcatctgta
     1921 ctggtaatgt cttgtgctgc cagtggcgct ttggcgacgt ccagcaacgg caactcttgc
     1981 ggctgatgtt cctgataact cagtacaata ttgccgtcgg catcggagag ctcaatggtc
     2041 agcctttcag gattgatacc gtgcaacacg ccctggatgg cggtcgcagg catcagtgcc
     2101 acggcatcat caagtaacgc gttgcatttg ccgatttcgc ggatcgccag gcggtatccg
     2161 ttcaacggag agatggcata cagcccccac tcaatccccc gcttactacg ctggagtttt
     2221 atcaccgcat cgcgggaggc attttgcacc atgcccaaag aatgataagg caggaaatac
     2281 tgctcaaaac gcttctcttc gtaagcatca agccaggtaa aatcgggctg gttatcggca
     2341 aaaataccgg tcatcagttc gatatacggg ccgttattgt cggtcagact cttatcccac
     2401 gcctggccaa attcactgtg tccccaactc cactgttttt tacctggcgc aatatggtgg
     2461 ttggcaacgt gcagcaaacc gccatcttca tcgtgacacc acgcgccgac aaaatcgtac
     2521 tgcgattttt cggccatata tgaggttgta acaggcacat ttttatagca agaaatgtcc
     2581 actccggcgg agtagtccac tttgtagtaa gtgccggtgg cgatggggaa agcggagacg
     2641 gcccgtttgc cgtgatcaaa caccgcagtc acatccggtg ggaaaacgct ctgatgccct
     2701 tccccccctt tcactgccgg gttggcccac cacaagaaat gacgcggcgt ggcgttaccg
     2761 ttatagacgc ggctggcgat ttccagcgcc gcccggtcag ggcgcagggt gaaacctgtc
     2821 atcacctgta aaccatgcat cggctccgtt tcgcctaccc acaccgtctg tgcaccgtct
     2881 tcatgggctt cgagggtgaa atcaacgggc ataaaggtgg tcgggcgatg atgttgcggc
     2941 cagttaaact caatcccacc ggaaatccac ggccccagca gccccaccag cgcaggttta
     3001 atgacttcat tgtgataaac aaaatcgcgc tgtttcactt tatcccacgc gcgatgcacc
     3061 cgaccgccca gttccggcag gatcatcact ttgatgtagt cgttttccag ccacaccgcc
     3121 tgccaggatt tcagggtttt ctgctcgctc agcgtatcgg tcacgccgta gggataaacc
     3181 gcgccggacg atccctgata aacgcgattt tccaggaaca tgggatgtat atcctgcggc
     3241 ccggtttcat aggtcgggat ctcaacgcgc tcttgccaca cttttactgg agtcatggtg
     3301 ccctcaatat taacaagaca tactgaatta aaagatttgt ggcagtgtat tgaacaatct
     3361 ggcaatgttt tcgcggaata atcacgcaat taactaaaca aggtttagtg aagatgagag
     3421 cctgcattaa caatcaacag attcgccacc ataacaaatg cgtgattctg gaactgctgt
     3481 accggcaaaa gcgcgccaat aaatcaacgc tggcccggct ggcgcaaatt tcgattccgg
     3541 cagtcagtaa tattttgcag gaactggaaa gcgaaaaacg ggtggtgaat attgacgatg
     3601 aaagccagac gcgcgggcat agtagcggta catggctgat tgcgccggaa ggtgactgga
     3661 cgctgtgcct gaacgtgacg cccaccagta ttgagtgtca ggttgctaat gcttgtttaa
     3721 gtccgaaagg tgaatttgag tatttacaga ttgatgcacc gacgccgcag gcgctgctgt
     3781 ccgaaatcga aaaatgctgg catcgccacc gtaaattgtg gccggaccgc accatcaatc
     3841 tggcgctggc aatccacggt caggttgatc cggtgaccgg cgtgtcgcaa accatgccgc
     3901 aagcgccgtg gacaacgccg gttgaggtga agtatctgct ggaagagaag ctgggcattc
     3961 gggtgatggt cgataatgac tgcgtgatgc tggcgctggc ggagaaatgg caaaataatt
     4021 cgcaggaacg ggatttctgc gtgatcaacg ttgattacgg cattggctcg tcgttcgtga
     4081 ttaacgagca aatttatcgc ggcagtttgt atggtagcgg acaaattggt cacaccatcg
     4141 ttaatccgga tggcgtcgtc tgcgactgtg gacgttacgg ctgcctggaa accgtcgcct
     4201 cgttaagtgc attaaaaaaa caggcgcggg tatggctaaa atcacaaccg gttaatactc
     4261 agcttgatcc tgaaaaactg acaaccgcgc agttaatcgc tgcctggcag agtggagaac
     4321 cgtggatcac cagctgggtt gatcgctctg ccaatgccat tggtttgagt ctgtataact
     4381 tcctcaacat cctcaatatt aatcagattt ggttgtacgg tcgcagttgt gcctttggtg
     4441 agaactggct taatactatt attcgccaga caggatttaa cccgttcgac cgcgacgaag
     4501 gaccgagcgt gaaagcgacg caaattggct tcgggcaatt aagccgcgca caacaggtgc
     4561 tgggaattgg ctatttgtat gttgaggcgc agttacgaca gatttgatgg cgcgataacg
     4621 tagaaaggct tcccgaagga agcctttttt caacagatta accgtttcgc ttatgcgtaa
     4681 accgggtaac gtgcgcagat gtcgagaact ttacctttga tgcgctcgat aacggcttca
     4741 tcattgatgc tgtccagcac gtcacacatc cagccagcca gttctttcgc ttctgcttct
     4801 ttgaagccgc gacgcgtaat tgccggagta cccacgcgaa taccggaggt cacaaacggg
     4861 ctcttcggat cgttcggtac gctgtttttg ttgacggtga tgttagcacg gcccagagcg
     4921 gcgtctgctt ctttaccggt caggttttta tcaaccagat caaccaggaa caggtggtta
     4981 tcagtgccgc cggaaaccac tttgtagccg cgctcgagga acacttctac catcgcttta
     5041 gcgtttttcg cgacctgctg ctggtaagtt ttgaactcag gctccatcgc ttctttcaga
     5101 gcaaccgctt taccggcgat tacgtgcatc aacggaccgc cctgaccacc agggaaaacg
     5161 gcagagttca gttttttgta cagctcttcg ctaccacctt tcgccaggat caggccgccg
     5221 cgcggacccg ccagggtttt gtgagtggtg gtagtaacaa cgtgagcatg aggaaccggg
     5281 ttcgggtaga cgccagcagc aaccaggccc gcaacgtgcg ccatatcaac gaacaggtaa
     5341 gcaccgatgc tgtcagcgat ttcacgcatt ttcgcccagt ccaccacgcc ggaatatgca
     5401 gagaaaccac cgataatcat tttcggcttg tgttctttgg cttgtttttc cagatcggcg
     5461 tagtcgatat gaccggtagc atcgataccg taaggaacga tgttgtacag tttaccggag
     5521 aagttaaccg gagaaccgtg agtcaggtga ccgccatgcg ccaggttcat acccagaacg
     5581 gtatcacctg gttccagcag cgcggtgtag accgcaaagt tagcctggga gccggagtgc
     5641 ggctggacgt tagcgtagtc agcgccgaac agttctttcg cacgatcgat cgccagttgt
     5701 tcaacgatat caacatactc gcaaccgccg tagtagcgtt tgcccggata accttcagca
     5761 tatttgttgg tcagctgaga accctgcgcc tgcattacgc gcgggctggt gtagttttcg
     5821 gaggcgatca gttcgatgtg ctcttcctga cgtacttttt cctgctccat agcctgccac
     5881 agttcggcat cataatcggc aatgttcatt tcacgcttta acatccgcat ctcctgactc
     5941 agctaacaat aaaatttttg gcctttatag gcggtcctgt tggacaacgg cgaacagtat
     6001 aaccgaatca ttgtgcgata acaggtcttg acaaaggaat ttacgcaaac gattaccttc
     6061 aggctacgca aggctttgga gaataaagag cttgcaaccg gaaacggatt tcttttcagg
     6121 tttgtgatgc aaatttttca cttcatcaca ttctttctga aaaacaccaa agaaccattt
     6181 acattgcagg gctatttttt ataagatgca tttgaaatac atcaattaag atgcaaaaaa
     6241 aggaagacca tatgcttgac gctcaaacca tcgctacagt aaaagccacc atccctttac
     6301 tggtggaaac ggggccaaag ttaaccgccc atttctacga ccgtatgttt actcataacc
     6361 cagaactcaa agaaattttt aacatgagta accagcgtaa tggcgatcaa cgtgaagccc
     6421 tgtttaacgc tattgccgcc tacgccagta atattgaaaa cctgcctgcg ctgctgccag
     6481 cggtagaaaa aatcgcgcag aagcacacca gcttccagat caaaccggaa cagtacaaca
     6541 tcgtcggtga acacctgttg gcaacgctgg acgaaatgtt cagcccgggg caggaagtgc
     6601 tggacgcgtg gggtaaagcc tatggtgtac tggctaatgt atttatcaat cgcgaggcgg
     6661 aaatctataa cgaaaacgcc agcaaagccg gtggttggga aggtactcgc gatttccgca
     6721 ttgtggctaa aacaccgcgc agcgcgctta tcaccagctt cgaactggag ccggtcgacg
     6781 gtggcgcagt ggcagaatac cgtccggggc aatatctcgg cgtctggctg aagccggaag
     6841 gtttcccgca tcaggaaatt cgtcagtact ctttgactcg caaaccggat ggcaaaggct
     6901 atcgtattgc ggtgaaacgc gaagagggtg ggcaggtatc caactggttg cacaatcacg
     6961 ccaatgttgg cgatgtcgtg aaactggtcg ctccggcagg tgatttcttt atggctgtcg
     7021 cagatgacac accagtgacg ttaatctctt ccggtgttgg tcaaacgcca atgctggcaa
     7081 tgctcgacac gctggcaaaa gcaggccaca cagcacaagt gaactggttc catgcggcag
     7141 aaaatggcga tgttcacgcc tttgccgatg aagttaagga actggggcag tcactgccgc
     7201 gctttaccgc gcacacctgg tatcgtcagc cgagcgaagc cgatcgcgct aaaggtcagt
     7261 ttgatagcga aggtctgatg gatttgagca aactggaagg tgcgttcagc gatccgacaa
     7321 tgcagttcta tctctgcggc ccggttggct tcatgcagtt taccgcgaaa cagttagtgg
     7381 atctgggcgt gaagcaggaa aacatttatt acgaatgctt tggcccgcat aaggtgctgt
     7441 aatttgatgt tgccggatgg aaacatccgg caacccttga cgcggtttaa attgccgcgt
     7501 cgtcctcttc accggtacgg atgcgaatga cccgtgccac gtcaaagacg aagattttac
     7561 cgtcaccgat tttgccggtt tgcgccgtgc gaataatggt atcgacacag gtatcgacaa
     7621 tgtcgtccgg tacgacaatc tcaattttca ctttcggcag aaaatccacc atatactccg
     7681 cgccgcggta cagctcggta tggcctttct ggcgaccaaa gcctttcact tcggtcaccg
     7741 tcatgccggt aataccgact tcggccagtg cttcgcggac atcgtccagc ttgaagggtt
     7801 ttataatcgc atcaatcttt ttcatgctat tccttgaaaa ggtcgcctgt cttttgatct
     7861 gctaaacgta acacataacg ccaattcatt ccttgaaatc gtttgcatcc agctcgtgtc
     7921 gggaaagcag tttataaaat tctgtccggt tgcgccccgc cattctcgcc gcgtgggtga
     7981 cgttgccttt ggtaatttgc agcagcttac gcaaatagtt gagttcaaac tgattacgtg
     8041 cctcaacaaa ggttggcagc gccgtgtttt caccctccag cgcctgctct actaatgcat
     8101 cgctaataac cggagatgag gtcagcgcca cgcactgttc aatcacgttg accaactggc
     8161 gcacattacc cggccagcta gcggtcatca ggcgtttcat cgcatcagtg gagaacgcgc
     8221 ggacaaacgg tttatgtcgc tctgccgcct ggcgcaacag gtgatttgcc agaagcggaa
     8281 tgtcttctgt gcgctctgcc agagccggaa ttttcaggct gacaacgttg aggcggtaat
     8341 agagatcttc gcggaattcc ccgcgcgcca tcgcttttgg cagatcacgg tgagtggcag
     8401 aaataatccg cacattgata tcaatatcgc ggttactgcc cagcgggcgc actttacgct
     8461 cctgcaacac gcgcagcagt ttgacctgta acggcgcagg catatcgcca atttcatcga
     8521 gaaatagcgt tccgccttcc gccgcctgga ataaaccttc gcgattgctg acagcgccag
     8581 taaacgcgcc acgcgcatga ccaaacagct ccgactccag caattgctcg ggcaatgcgc
     8641 cacagttaat agcaataaat ggtttgctgt tgcgcgggct ggcgttgtgg atagcctggg
     8701 cgaaaatctc tttcccggtg ccgctctgac cgttaatcaa aacgctgacg tctgattgcg
     8761 ccaccagccg cgcctgttcc agcaaacgca gcatcagcgg gctgcgggtg acaattgcct
     8821 cgcgccagcg ttcatcggtg gctggcgcgg attgctccag cgcatcgtca attgcctgat
     8881 atagcgcgtc tttgtcgaca ggcttggtga ggaaactaaa aacgccctgc tgtgttgcag
     8941 caacggcatc ggggatagaa ccatgcgcag taagaataat tactggcatt cccggctgca
     9001 ctttctggat ttcagcaaat agctgcatac cgtccatttc atccatccgc aggtcgctga
     9061 taactaaatc tactttttcg cgattcagta cccgtaatcc ttcagcgcca ctttccgccg
     9121 tgaccacact gtagccttcg ctggtcaggc gcaggccaag cagtttcagc aatcccggat
     9181 cgtcatcgac caataataaa tgcgcaggtt tatggctcat caggagtgac ctcatgggtg
     9241 gatggcgcgg gcttttcact ctcgtgcggc gtatccggcg agaaatttcc agccggtttg
     9301 cgggtcgaga gctggcgttc aatatcggtc aggttttcca gcttgcgggt ggtgagttcc
     9361 agttgctgct gtagaacgtg atgttgctgg cgcaatgtat ccagctcgct gtcgctggac
     9421 tgctggagtt tactgtaacg ttggcgctct tccgccagtt gcagttgcag cgcctgaccg
     9481 tcgcgccaga gttgatacag tgggcgaacc tgtgccggga tctcggtact taacgcttca
     9541 atacgcgcga ccagctggcg gcgctcatac ggcgtaattt tggcgtcggc gagcaaaatc
     9601 ccttgtttaa aggtattttg ccagcagccg tcgtcatatt ggcgagcttg ctgacgcgac
     9661 tgcgcaggca ttaaacgatc agcacaatcc atcgcccgca gccagtaaag cggattggtt
     9721 tcggttgatt taccttgcag cgcccagatg tcgctacatt cagtagaaag atagtcagcc
     9781 agttgataaa ccggaatttt ttcttctgct ggcgtatcaa tggctggctt attgtgattc
     9841 tgcacgcaac ccagcaatgc cagacatggc agccctgcca gccacagccg tcggggcaat
     9901 aatcgttgaa aaatgtgtcg catattcacc agacttaaag cctatcccag tgggcgtaat
     9961 tgttgcagac agtctggaca tggacagcgc ggagaaaccg gagcgtacat atcgtacgtg
    10021 aagatttcga gcactgcccg gagccgaact gacaaataaa atagcctgat aggataggct
    10081 gttagcatta tttcgtgttt ttcgacgacg gtaattcaat gcggaaacaa acgtcttgcc
    10141 cgctctcgtc gaccagatac agttcccctt gcatacggcg aatacaatcc ctggcaatgc
    10201 ttaatcccag accgctgccc ttcaccgccc cttttcgctg gtggcttccc tgaaaaaagg
    10261 gttcgaagat catggcgcgt tcctcttgcg gaatgggcgt gcctgtattg atgacatcaa
    10321 tataaacccg cgcaccatgt gaactgctgc gaaggcaaat gttaccggat tcagccccgt
    10381 agtgcaccgc attggagtaa agattatcca gtacgctcat cagcagcatt ggctccgcca
    10441 ggcaagctgt tgctttgaga tcgacgtcgg tatgcatcat tttagcccgt gcgggcaggc
    10501 tatgagcaga aaccactgtc tccaccagcg gtgctaattc aacattctcc agttccaccg
    10561 cactgtccgc ctgtttacgg ttgtaatcaa gcagttgttc gatcagtttt tgcaaattgc
    10621 ggctgctgct atcaagaatg ctcaccacct ctttttgctc tggcgtaagc ggcccgacaa
    10681 cctggtcagc cagtaattca gtgccctcgc gcatactcgc cagtggcgtt tttaattcat
    10741 gagataaatg tcttaaaaat tgatggcgtt gggattccag ccatgacagg cgctcactta
    10801 accaaagaat acgttgccca accgagcgta actcgctcgg tccactgaac gaaacgctat
    10861 tgcccagaga acgcccttcc cccagacggt tgatcatgcg ctcgatattt ttcaccggcc
    10921 cgataatcat ccgcgtgaaa agtagcacca tcaccagact caccagaaat agcaccagcg
    10981 attgccaacc aaaatattgc ccacgttcgg cgatttcacg ctgaagttgc tgcccacgag
    11041 agaacaccac tgtgcgcgtg gcctgcacca tttcggtatt ggcactggca aaggcttcaa
    11101 gacgcgcggc ggcggcagca tcgggaccac tgttgttaca ctgaagttgg gccagattgt
    11161 tcaaatcctg acgcaatgcc tggtaaagtt tatcgtctgg cagtacgcct gcgtgggcat
    11221 cgagcatttc gctgtaacgc ttgcgctggc tttgataaac cttcgcaagc gtagggtcgt
    11281 ccagcacgca atactgacgg tagctacgct ccatctccag cgccgcgttg gtcatcgctt
    11341 cactacgccg ggcatcaata agcgtagtgc ggttaaccag cgccgcctga tcgctaagcg
    11401 cattcaggct ttgccaggct tgccatgcca gcaccaacag gggtagtaga attagcaaaa
    11461 atgccagcat taccagttgt cgtaatgagc ggggaaaaac gggccagcgt ttcaaggtgt
    11521 tactctcgtc agacgcgaat agcctgatgc taaccgaggg gaagttcaga tacaacaaag
    11581 ccgggaatta cccggctttg ttatggaata aggcggtgcc taactcgacg tttcgcccga
    11641 tggttgatat agctacgctg atatcagaag ttggacggca ggcaccttgt tgtgcgtcat
    11701 tcgaatttta tgtagcacgt cccgaagggg ctgacataag tcggtgaatg agccactgct
    11761 tactattatg cagtaactgt gccaataaag aaaatagttt ggtaacgtac tgattatacg
    11821 ttgctttgag ggatttatgg cttcttcgct atttgaatgt aaatcagcca ctgtgtcgct
    11881 aaaaagagac agcttaagat aaacttatta gattacaata aaatcaatca cttaagtgtc
    11941 gccagaaagc gacacggtaa accacccatt gtcgtgattt acagacacaa aaaagctccc
    12001 ggagttggga gcttatgata gtggttggtg cttaatgccg catccgggct gcaaaaccaa
    12061 tgaactgatg aattacccca actgcttacg cgcattgcgg aaaatgcgca tccatgggcc
    12121 atcctcgccc cagttttccg gatgccagga gttgctgaca gtacggaaaa cacgttccgg
    12181 gtgcggcatc ataatggtga ctcgaccact ttcagtcgtg actgccgtaa taccgttcgg
    12241 tgaaccgttc gggttagccg ggtaggtttc agtgactttg ccgaagttat cgacatagcg
    12301 cagtgccacc agccctttgc tttccagtgc cgccagatgc gccgcatcac gcacttccac
    12361 gcgcccttca ccatgagaga cagcaatcgg catttgcgag cccaccatcc cctgcaacaa
    12421 cagagacggg ctttgggtta cttcaaccag gctgaaacgc gcttcaaagc gatcggaggt
    12481 attgcgcaca aaacgtggcc acaactcact acctgggatc agttcgcgca ggttagacat
    12541 catctggcaa ccgttacata cccccagcgc cagcgtttgc ggacggtgga agaaggttgc
    12601 aaactcatcg cgtacacggt cattgaacag gattgacttc gcccaacctt caccggcacc
    12661 cagcacatca ccgtaggaga aaccaccgca cgcgaccagg gcgtggaaat cttccaggcc
    12721 cgtgcgtccg gtcagcaggt cactcatatg cacgtcgata gcatcaaagc ctgcacggtg
    12781 gaaagctgcc gccatttcaa catgcgagtt cacgccctgc tcacgcagta cggcaacttt
    12841 cggacgtgcg ccagtggcaa tatacggtgc tgccacatct tcgttgatat cgaacgacag
    12901 ttttacattc aggcccggat cggcgtcgtt agatttcgcc tgatgctcct gatcggcaca
    12961 ctccgggttg tcacgcaggc gctgcatctg ccaggtagtt tctgcccacc agacacgcaa
    13021 cgtggtgcgg ctttcgctga atacagtctg cccgttggcg gtaatcacaa aacggtcacc
    13081 ggaaaccgcc tgccctacat aatggacaca atcagcaagc ccatgctgtg ccagtacgga
    13141 ctcgaccgct tcacggtcag cggcacgaac ctgaatcacc gcacccagtt cttcgttaaa
    13201 caacgccgcc aggcgatcgt cgcccagaga ggcaatatcc gcgttaatgc cgcaatgacc
    13261 agcaaaggcc atttccgcca gcgttaccag caggccgcca tcagagcggt cgtggtatgc
    13321 gagcagctta cgctgtgcaa ccagcgcctg aatcgcgtca tagaagcctt tcagttgcgc
    13381 gacgtcgcgt acatctgccg gtttgtcgcc aagctgacga taaacctgcg ccagcgccgt
    13441 tgcgcccagc gcgttattgc ctttgcccaa atcaatcagc aatagtgcgt tatcttcggt
    13501 agaaagctgt ggcgtgatgg tgtgacgcac atcttccacg cgggcaaatg cagaaatcac
    13561 cagcgacagc ggcgacgtca tttcgcgctc ttcgttacct tcctgccagc gggttttcat
    13621 cgacatagag tctttaccca ccgggatcgt caggcccagc gccggacaaa gctcttcgcc
    13681 cacggcttta acggcttcat acaggcccgc atcttcacca gggtggcctg ccgccgccat
    13741 ccagttggcg gaaagtttaa tgcgtttgat atcgccaatc tgtgttgcgg caatattggt
    13801 taacgcttca ccgaccgcca gacgggcaga ggcggcgaaa tccagcagcg caaccggcgc
    13861 acgctcgcca atcgccatcg cttcaccgta gtagctgtcg aggctggcgg tagtgaccgc
    13921 gcagttagcg accggcacct gccacggacc caccatctga tcgcgcgcta ccatgccagt
    13981 tacgctgcgg tcaccgatgg tcaccaggaa agttttctcc gccacggtcg gcagatgcag
    14041 tatgcgtttc accgcgtctg caatggtgat cccttcacgg accagcgcat cgcccttcgc
    14101 tttcagcgtt tgtacatcgc gggtcatctt cggcgtttta ccaagcagga cgtccagcgg
    14161 cagatcgatc ggctgattat caaaatgacg atcgtgtaga gaaagatgca gttcttcggt
    14221 cgcttcacca atcaccgcgt agggtgcgcg ctcacgctta cacagttcgt caaacagcgg
    14281 taattgatcg gcagcaaccg ccagcacgta gcgttcctgg gattcgttac accagatttc
    14341 cagcgggctc atgcctggct cgtcgctcag aatgtcgcgc agttcaaatt taccgccacg
    14401 cccgccgtcg ctcaccagtt ccggcatagc gttagaaaga ccgcctgcgc caacgtcgtg
    14461 gataaacagt attgggttgg catcaccaag ctgccagcaa cggtcaatca cttcctggca
    14521 gcgacgctcc atctccgggt tgtcgcgctg tacggaagca aagtcgaggt cggcatcaga
    14581 ctgaccagac gccatggaag acgccgcgcc gccgccaaga ccgatgttca ttgccgggcc
    14641 gccgagaacg accagcttcg cgccaacgtt gatctcgcct ttttgtacgt gatcggcgcg
    14701 aatgttgccg atcccgcccg ccagcatgat cggtttgtga taaccgcgca gctcttcgcc
    14761 gttgtggctg ttcacttttt cttcataagt acggaagtag ccgttcagtg ccggacgacc
    14821 aaattcgttg ttaaacgccg caccgcccag cgggccttcg gtcatgatgt ccagcgcggt
    14881 gacaatgcgc tcaggcttac cgaaatcttc ttcccacggc tgttcgaagc caagaattcg
    14941 caggttggaa acggagaaac caaccaaacc cgctttcggc ttcgcgccgc gcccggtggc
    15001 accttcatcg cggatttcac cgccggaacc ggtcgccgcg cccggccacg gagaaatcgc
    15061 cgtcgggtgg ttgtgagttt cgactttcat cagaatatgc gccggttcct gatggaaatc
    15121 atagcggccc gtttcgtggt cagcaaagta gcggcccact tcagaacctt ccattacggc
    15181 ggcgttatct ttataagcag agagaacgtg atctggcgtg gtttcgaaag tatttttgat
    15241 catcctgaac agcgatttcg gctgttgttc accgtcgata atccagtcgg cgttaaaaat
    15301 tttgtggcgg cagtgctcag agttcgcctg agcgaacata tacagctcga tgtcgttcgg
    15361 gttacgacca agctttgtga aagcatcctg cagatagtca atttcatctt ccgccagagc
    15421 caggccaaga cgcaggttag cgtcgatcag cgcctgacgg ccctgcccca gcaaatcaac
    15481 gcttgtgacc ggagtcggtt gatggtgggc aaacaactgc tctgcatcat ctaaatcaaa
    15541 aaagacagtt tccatcatgc ggtcgtgcag ttcagcggta acctgctgcc attgttcatt
    15601 ggtcagcgta ccggcttcta tatagtaagc aacgccgcgc tcaaggcggt ttacctgttg
    15661 tagcccgcag ttatgggcaa tatcggtcgc tttcgaagac cagggagaga tggtgccagg
    15721 acgcggggtc accagcagga gtttgccttg cggggcgtgg ctggcgagtg ccggaccata
    15781 tttcagcagg cgttcaagtt gtgcgtgctc atcatcgttt aacggcgcat tgaggtcagc
    15841 aaaatggaca tactcggcgt aaatattgtg aaccgggagc ctggcagcct gaaaacgtgc
    15901 cagcagtttg ttgattcgga atgccgacag tgcaggcgaa ccacgcagaa tttccatcat
    15961 aagtctctcg tcttctaagc tttcggtgta cccaaggggg ggggaaacgg gcgtcattat
    16021 aaagaatctg atgcgctgac gaaaccgttt gcgtggaaat aaaatcacca tcgtgaatta
    16081 gcaacgcgtg ccgccaatgg ctgtaataag ttgccatctg gcgcaggttt acgcaaaatg
    16141 ccgctcattt atgagtaaac ctttcactat tattacgttt tttcaagctg ggacgcgcac
    16201 gacacagaga attaactaat tgaaaaaatt aaagattaat tatctgttca tcggcattct
    16261 ggcactgctg ctcgcggtcg ctctctggcc atccattccc tggtttggta aagccgacaa
    16321 ccgtatcgcc gccattcaag cgcggggaga gttgcgtgtg agcaccattc atactcccct
    16381 gacttataac gaaatcaacg ggaaaccttt tggcctggat tacgaactgg cgaaacagtt
    16441 tgccgattac ctcggcgtaa aactgaaagt gaccgtgcgg cagaatatca gccagctgtt
    16501 tgacgacctt gataatggta acgccgacct gctggcggca ggactggtct ataacagtga
    16561 gcgggtaaaa aattatcagc ctggccctac ctattattcc gtgtcacaac aactggttta
    16621 taaagtgggt cagtatcgcc cacgtacgct gtgcaacctg acggcggagc aactcaccgt
    16681 tgcaccgggt catgtggtgg ttaacgatct ccagaccctg aaagaaacaa aattcccgga
    16741 attaagctgg aaggtagacg acaaaaaagg ctctgcggaa ttaatggaag atgtcatcga
    16801 aggaaaactc gattacacca ttgctgattc tgtcgccatc agcctgtttc agcgcgttca
    16861 cccggagctc gccgtagcgc tcgatatcac cgatgaacaa ccggtgactt ggtttagccc
    16921 gttagatggc gataataccc tttccgccgc cctgctcgac ttcttcaacg aaatgaatga
    16981 agacggtacg ctggcacgca ttgaagagaa atacctgggg catggcgatg attttgatta
    17041 cgtcgatacg cgcacatttt tacgcgccgt cgatgcggta ctgccgcagt taaagcccct
    17101 gtttgagaaa tacgccgaag aaattgactg gcgtttgctg gccgctattg cttatcagga
    17161 atcgcactgg gatgcacagg ccacttcacc gacgggtgtg cgcggcatga tgatgttaac
    17221 caaaaatacc gcgcaaagcc tcggcattac ggatcgtacc gatgccgaac agagcatcag
    17281 cggtggcgtg cgttatttgc aggatatgat gagtaaagtg ccggaaagtg tgccggagaa
    17341 cgagcggatc tggtttgccc tcgctgcgta caatatgggc tatgcgcata tgctggatgc
    17401 ccgcgccctg acggcaaaaa ccaaagggaa tcctgacagt tgggctgacg taaaacagcg
    17461 tctgccttta cttagccaga aaccctatta cagcaagctg acttacggct acgctcgtgg
    17521 acatgaagcc tacgcttatg tcgaaaatat tcgtaagtat caaattagcc tggtgggtta
    17581 tctgcaagag aaagagaagc aggctacaga agcggcgatg caactggcgc aggattatcc
    17641 ggcggtatcg cctacggagt tgggcaaaga gaaatttcct tttctctcgt ttctttccca
    17701 gtcgtcatca aactatttga cccattctcc ctctctgctg ttttccagga aagggagtga
    17761 agagaaacaa aattaatccg tcgaggattg cgcttttttc tgcgctttaa tttcctggcg
    17821 gcgcatgcga aagaagtcac tgagcaacgc cgcgcactca tccgccagta ttccttccgt
    17881 aatttccact cggtgattca tacccggatg atgcagcaca tccattaaag atcccgcagc
    17941 gccagttttc gcgtcacgcg caccaaagac cacgcgacca atgcgactgt ggatcatcgc
    18001 tccggcacac attacacatg gttcaagcgt gacatacaac gtggcgtcga tcagacgata
    18061 attttgcatc accagaccac cctgccgcag ggccatgatt tctgcatgtg cggtgggatc
    18121 atggcgacca atcgggcggt tccaaccttc gccgattacc cgattgttat gcactaatac
    18181 cgcgccgacc ggcacttccc gctcatccca ggcacgtttc gccagcgtca gcgcgtgacg
    18241 catccagtat tcgtggctaa attcgacttc agacaaaaag aaaactccgg ttataaaagc
    18301 gcggcgcatt atacacggac gctatgcttt actctattcc agttgctgga gttcaccgcg
    18361 cggggttact cgccaacgat gctgacagaa ataaagcagc ggattgtcct gattactgtc
    18421 gctatagcca ctgtacagcc gcagcggagt gccgattttg cgctccagtt gtgcgacctt
    18481 ttcatgtccc agacaacgca tcgtcaatac ccaaccacca tagccacgct gaatttggct
    18541 ggcgataaga ttaacccgcg gcagccaggg cttatcgaaa taaaccgctt caaccagcgg
    18601 ctgcggagag ccggtaatca accagatatc agcatcggaa cttaacaggt aggtggttaa
    18661 tcgctcctga accagcggaa aggcggtaac attgtcgcga aaccagcgca cgaaatcggc
    18721 ctgcaacgtc tgtaaacgtg cttcgctgtg accaaaagtg cacccccaca gaagcagact
    18781 catcggccag cgtgccgcac gaccttttat caataacgca atggctataa tcggtaacaa
    18841 cggcaggaca agtaacgcat tcagcggttg gcgacgtagt aaatagcgca gaaaactgcc
    18901 gaacatatcc tgctgatgca atgttccatc taagtcaaaa aacaccacac gacgctcgtg
    18961 agttgccaaa ccatactcct ctggactgaa acatcctgat taattttcgc tactacatag
    19021 cctaacagat agatcatcac ttttccggca acaatcgacc gcatcatggc taactggaat
    19081 ttttaattca tggcaattag cggcaatgga atataaaatt cactcgcgtg tgtctcatat
    19141 tgcctgttgt cgccactatt tcatcgcgag gaaagatatg aacggcttac ttcgtatccg
    19201 tcagcgttac caggggcttg cccagagtga taaaaaactg gcggattatc tgctgctaca
    19261 acctgatacg gcgcgccatt taagctctca gcaactggcc aacgaagccg gagtcagtca
    19321 gtccagcgtc gtgaagttcg cgcaaaaact cggctataaa ggttttccgg cgcttaagtt
    19381 ggcgttgagt gaagcgctgg caagccagcc ggaatcgccc tccgtgccca ttcataacca
    19441 aatccgcggt gatgatccgt tacggctggt cggcgaaaaa ctgattaaag aaaatactgc
    19501 cgctatgtac gcaacgctaa acgttaatag tgaagagaaa ctgcatgaat gcgtaacaat
    19561 gttgcgctct gcgcggcgga taattctgac cggtattggc gcttcgggtc tggtggcgca
    19621 aaactttgcc tggaagctga tgaagattgg cttcaatgct gccgcagtgc gcgatatgca
    19681 tgcgctactc gcaacagtac aggcgtcgtc ccctgacgat ctgttattag ccatttccta
    19741 caccggtgta cgacgcgagt taaacctggc ggcagatgag atgctgcgag tgggcggaaa
    19801 agtgctggcg attaccggct ttactccgaa tgccctgcaa cagcgtgctt ctcattgcct
    19861 gtataccatt gccgaagaac aagcgacaaa cagtgcttca atctctgctt gtcacgctca
    19921 gggaatgtta acggatttgc tgttcattgc gctgattcag caggatctgg aactggcacc
    19981 agaacgtatt cgtcatagtg aagcgctggt gaaaaaactg gtctgagtaa agaatgcgcg
    20041 tataatgccc gcccggtttg tgttgttttg agagtttcct tatggcgttg ttaatcacta
    20101 aaaaatgcat caattgtgat atgtgtgaac ccgaatgccc gaatgaggcg atttcaatgg
    20161 gagatcatat ctacgagatt aacagcgata agtgtaccga atgcgtaggg cactacgaga
    20221 caccaacctg ccagaaggtg tgcccgatcc ccaatactat tgtgaaagat ccggcgcatg
    20281 tcgagacaga agaacagttg tgggataaat ttgtgctgat gcaccacgcg gataaaattt
    20341 aatattctac tctggaagta gagtattaat tatattactg ggaagcctta acgccattat
    20401 atttatttaa ttgatgacat tagcataatc attcactaag ttaatttata tagtatctgc
    20461 caagacactt atttatagtt attaaaggcg cgtccgattg gttcaccgga cgcaccttaa
    20521 gtacgtttcc ttgtgttata agaacagaag gatcagctgt aaaacagcaa tgatgatttt
    20581 gatgacccgt ttaatcaggt atcggcaatc agtcattcgt ttttccttaa acaaggaatg
    20641 cagccgttca gattagccct tacatctccc caaaactgaa cgtgcgagtt attgagggtg
    20701 catgctgcac tccacaccag agctttgacg acaccactcg tttcaatggg ggaattctgt
    20761 ggcatggtgt aaagcacagc aaaatcttca ataacgaagc caattttaat gtacttacga
    20821 attggcggtc acgttaatct ttccatcaat attgctttct tcgtaaaggc tcgagttttt
    20881 atgctaaaga ttgcaagttg cttgtaaaag ataagtacac tgatccataa tcgctgttgt
    20941 tgagggtgca tgctgcacaa aattaaagtt aaaaagtaaa acccccgttc cttaccagtt
    21001 cgggggtttt actttttaaa gagaacggta ttattttaac tttcaataat taccgtggca
    21061 caagcatagt ggcgttcatc tgccagcgtt acatgcatat ttacaacgcc gagcttttcc
    21121 gccagtttta atgcctcacc ccatagccgt agccgtggtt tgccgagctc atcattgaat
    21181 acttcaaatt gattaaacgc cagaccattg cggatcccgg tgccaaacgc ttttgctgcg
    21241 gcttctttca cagcaaaacg cttcgccaga aaacgcaccg gctggtggtg cgttttccag
    21301 attgcccatt cgttatcgct taatacgcgg cgtgccaggc gctcaccgga tcgggcgatc
    21361 actgcttcta tgcgagcgat ctctacgata tccgtgccta aacctaatat tgccattagc
    21421 cacgcgcttc cagcatcaga cgcttcattt ctgccaccgc atctttcagt ccggtcatca
    21481 ctgcacggcc aataatggca tgaccgatat tcagttcatg catctcaggg atggcggcaa
    21541 tggctttcac gttgtgatag gtcagaccgt gtccggcgtt aactttcaga ccgagactag
    21601 cggcaaaggt cgcggctttg gcgatacgca ccagctcttg cgcctgttcg gcgtcagttt
    21661 tggcatcagc atagcaaccg gtgtggatct cgataaacgg tgcgccaacc tctgccgcag
    21721 ctttgatctg ctcttcatcg gcgtcgataa agagagaaac ctgaatcccg gcatctgtca
    21781 gacgtttgca ggcatcgcgc attttttcac gctgccctgc aacgtccagg ccgccttcgg
    21841 ttgttacttc ctgacgcttt tccggtacca ggcagcaaaa atgtggcttc gtctcaacgg
    21901 cgatcgccag catctcttcg gtcactgcca tctccagatt cattcgggta tccagcgtct
    21961 gccgcaggat gcgcacatcg cggtcagtaa tgtggcggcg atcttcacgt aaatgcacgg
    22021 taatgccgtc cgctcccgcc tgctcggcaa taaacgccgc ctgcaccgga tccgggtaag
    22081 cagtaccgcg tgcgttacgc agcgttgcaa tatggtcaat gttgacgcct aacagtaatt
    22141 cagccatgac aatcctcatc attcataatg tgttttcacc gttcgcttag gcataaactg
    22201 ccggaacagt tccctgctct ttaatggttt accgccaaga tacggcttaa gcgccatgcg
    22261 ggtaaagcgt ttcgcggcgc gtagtgtgtc tgcgtcagga aattcccgcg cgtttaacgc
    22321 ttttaactgc cttccggtga acgttttatt gtcgataacg acgcttgcga taaacccttt
    22381 ttcttcgcga taacgatacg tcatggtgtc atctaccggc tcgccgctac ccgcgcaata
    22441 ggtaaaattg acgccatagc ccagatgccc gagcagtgcc agttcaaagc ggcgcagcgc
    22501 gggttctggc gtaccagtgg cacctgcaag agactgaatg cagtgcaaat aatcgaaaaa
    22561 gagttcagag aagcgcgtct cgtattccag tacgcgggag agaagttcgt tgatgtacag
    22621 accgctgtaa agcgtgatac cgcttaatgg cagcgccagc gagacagctt cagcactgcg
    22681 cagcgttttg acttcgccac gcccgccgaa acgtagcaag agaggggtga aaggctgtaa
    22741 tgcacctttc agagtagagc gtttagagcg tgcgcctttg gcaaccagac gcacgcgacc
    22801 cgattcctcc gtgaagacgt ccagcatcag gctggtttcg ctccacgggc gactatgcag
    22861 gacaaatgcg cgctgccagc cttccatcgg agtgactctt aaagatcgtc aacgtaaccg
    22921 agactgcgca gtgcgcgttc gtcgtcggcc caaccggatt tcacttttac ccacagttca
    22981 aggtggacag gcgcttcgaa catttcctgc atgtctttac gcgcttcaat cccgatggtt
    23041 ttgatcttgg cccctttgtt gccaataacc atcttcttct gcccttcacg ctcaacgaga
    23101 atcaaaccat tgatgtcata accaccgcgt tcgttagaga cgaaacgttc gatctccacg
    23161 gtcacggagt acggcagttc agcgccgagg aaacgcatca gtttttcgcg gatgatttca
    23221 gacgccataa aacgctgtga gcgatcggtg atgtaatctt ccgggaagtg atgggtcgct
    23281 tcaggcagat gcttacgcac gattgctgcg atagtgtcga cattcagccc ggtttcagca
    23341 gagatcggca cgatatcgag gaagttcatc tgacttgcca ggaactgtaa gtgcggcagc
    23401 agatcggctt tttcctgcac gttatccact ttgttcaccg cgaggatcac cggcgctttg
    23461 ccatcgcgca gtttgttgag caccatttcg tcgtccggcg tccagcgggt gccttcaacg
    23521 acaaaaatca ccagctcaac gtcgccaata gagctgctcg ccgctttgtt catcaggcgg
    23581 ttaatagcgc gtttttcttc catatgcagg ccaggggtat caacgtagat cgcctgatac
    23641 gcgccttcag tatggatccc cacaatgcgg tgacgagttg tttgcgcttt gcgggaggtg
    23701 atggagatct tctgccccag cagtttgttc aacaatgtgg atttgccaac gttcggacgt
    23761 ccgacgatgg caataaatcc gcagtaactt ttatcgatgc tcattccagc tccagttttt
    23821 tcaacgcctg ttcggcggca gcctgctcag ccttacgacg gcttgaacct gtgccaacca
    23881 ccggttcact caggccgctg acctggcagt ggatagtaaa ttcctgatcg tgcgcttcgc
    23941 cacgtacctg gactaccaga taagtcggca gcggcagatg gcgaccctgc aaatattctt
    24001 gcaagcgcgt tttcggatct ttttgtttat cgcctgggct aatttcgtcc aaacgagttt
    24061 gataccagtt gaggattaat ttctcgacgg tttgaatatc actgtcgagg aatacgccac
    24121 caattaatgc ttcgacggta tcggcgagaa ttgactcacg acgaaatcca ccgcttttaa
    24181 gttcaccagg ccctaaacgt aagcactcgc ctaactcaaa ttcgcgcgcc agttccgcca
    24241 gcgtattgcc acggaccagc gtggcgcgca tccggctcat atcgccttca tccacacgag
    24301 ggaaacggtg ataaagcgca ttggcgataa cgtagctcag aatagagtcg cctaaaaatt
    24361 ctaaacgctc gttatgtttg ctgctggcac tacgatgagt taatgcctgc tgcaacagtt
    24421 cctgatgatt aaaagtgtag cccagcttcc gttgaagccg attaattacg atggggttca
    24481 tgcgatacca ataaataaat gcgtcaacaa ttcagcacac gaaacagacc tgatatacat
    24541 ggctctgcta actgcttcgc tgcagtttca gtttaccggt atatggggac caacgctgtt
    24601 tcgtgtgccg tggcaacctg gaggtgccaa ccttaaactt cgggggaata ttctatacac
    24661 aacgacgggg gatgtcgtta gccacgggag atttatctca taaataattc acgttgtcgc
    24721 cataacggcg acaacgtgaa cgaagatggg ctattaatgg atgccgccaa tgcgacttaa
    24781 gcgcacacct gtcggccatt cgccttcttg cttatcgaaa ctcatccaga tagccgttgc
    24841 ccgaccgacc agattcgctt caggcacaaa accccagtaa cggctgtccg cgctgttgtc
    24901 gcggttgtcg cccatcatga agtattgtcc cggcggaaca atccaggttg ccagttgttg
    24961 ccctggctgt tggtaataca tccccacctg gtcctgcgca atcggcactg tcagaattcg
    25021 gtgcgtcaca tcacccaatg tctctttacg ctcggaaaga cgaattccat tttctttggt
    25081 ttcgtttttc ggcacttcaa agaatccgct ggtcgcttcc ccaccattac ggcgtgagaa
    25141 ggtctgaacg aaatcgctcg gttccacgtt ggagtaggtg accggtagcg cgttttcaca
    25201 cgcctggccg gaactgcatc ccggttgaat cgtcagctct tttgagaccg gatcgtaagt
    25261 gactttatcg cccggtaaac ccaccgcgcg cttgatgtaa tcaagctttg gatcttccgg
    25321 atatttaaag accacgatat cgccgcgttt cggatgaccg gtttcgatca gcgttttctg
    25381 gtagatagga tctttaatgc cataagcaaa cttctctacc agaataaaat caccgattaa
    25441 cagagtcggc atcatcgaac ctgacgggat ctggaacggt tcataaataa acgaacgtac
    25501 aatcaatacg atagccagca ccggaaaaac agaagcaccg gtttccagcc agccaggctt
    25561 cggcgcaacc tttttcaggg ttgctttatc cagtgagtca ccggcagccg cctgcgccgc
    25621 tgcctgacgt tcccgccgtt taggtgcgaa aaagaattta tccacgcacc ataaaatgcc
    25681 cgtcaccagt gtggcaatca ccagaatcag ggcaaacata ttcgccatgc caactcctaa
    25741 gggttatttg ttgtctttgc cgacgtgcag aatggcgagg aacgcttcct gcggcagctc
    25801 gacgttaccg atctgcttca tgcgtttctt accttctttc tgcttctgca gcagcttttt
    25861 cttacggctg atatcgccgc cataacattt agccagtacg tttttacgca gctgtttcac
    25921 ggtggatcgc gcaataatgt gcgtaccaat cgctgcctga atggcgatat caaactgctg
    25981 gcgtgggatc agatctttca tcttctccac caactcgcga ccgcggtttt gcgaattatc
    26041 acggtgggtg atcagcgcca acgcatcaac acgttcaccg ttgattaata cgtctacacg
    26101 taccatgtcg gacgcctgga agcgtttgaa gttgtaatcc agagacgcat aaccacgcga
    26161 ggtagatttc aggcgatcga agaagtcgag caccacttcc gccatcggga tctcgtacgt
    26221 cagcgccacc tgattaccgt ggtaaaccat attggtctgc acgccgcgtt tttctacgca
    26281 cagcgtaata acgttgccga gatatgcctg cggcagcagc atgtgacact ctgcaatcgg
    26341 ctcgcgcagt tcgtaaatgt tatttaccgc aggcagcttg gatgggctgt cgacgtagat
    26401 aacttccctt gacgtggttt caacttcata cactacggtc ggcgcagtgg tgatcagatc
    26461 cagatcgtat tcacgttcca gacgttcctg gatgatctcc atgtgcagca ggccaaggaa
    26521 gccgcagcgg aaaccaaagc ccagcgcgct ggagctttcc ggctcataga acagtgaggc
    26581 atcattcagg ctgagtttac ccagcgcgtc acggaaggct tcatagtcgt cggaacttac
    26641 cgggaacaga ccggcgtata cctgcggttt gactttctta aagccaggca gcgccttttc
    26701 tgccggatta cgcgccagcg ttaaggtatc gccgactgga gcgccgtgga tatctttaat
    26761 cgcacatacc agccagccta cttcgccaca tttcagttca gtgcggtcaa cctgtttcgg
    26821 cgtgaagatg cccagacggt cggcgttata ggtctgcccg gtactcatga ctttcacttt
    26881 gtcgccctta cgcagggtgc cgtttttaat acggataagt gaaacaacgc ccaggtagtt
    26941 gtcgaaccat gagtcgataa ttagtgcctg caacgggcct tccggatcgc cttccggcgg
    27001 cggaatgtcg cgcaccagac gttcgagaac gtcctgcacg ccaacgccgg ttttcgctga
    27061 acagcgcacc gcgtcagtgg cgtcgatgcc gacgatatct tcaatttctt ccgccacgcg
    27121 ttcaggatcg gctgccggca ggtcaatctt gttcagtact ggcaccactt cgagatccat
    27181 ttccatggcg gtgtagcagt ttgccagggt ttgcgcttcc acgccctgcc cggcgtcgac
    27241 caccagcaat gcaccttcac aggcagccag cgaacgggaa acttcatagg agaagtctac
    27301 gtggcccggg gtgtcgataa agttaagctg ataggtttcg ccgtcagacg ctttgtagtc
    27361 cagcgtcacg ctttgcgctt tgatggtaat gccacgctca cgctcaagat ccatggaatc
    27421 gagaacctgc gcctccattt cacggtcaga caggccaccg cagatctgga taatacggtc
    27481 agacagcgtc gatttaccgt ggtcaatgtg agctatgatc gaaaagttac gtatattctt
    27541 cataaagtat gattattgtg ccttaatgcc cggttaacca ggcttttaga agtcgctgtt
    27601 ctgagcttaa cgtctgtatt aatagaaacg ccgcattcta cactacaaca ttgaggcgag
    27661 gaaatgttca taccgtatgg attgtggtat ctggaaacgt cctcgcattt gttatgcaaa
    27721 atgcaacaaa gccagtgaaa tcactggctc gcgtcttccg aagatgtttc aaatcgcaca
    27781 aggccaggcg gcaatgccac gcttaagatg atcggttgcc attctgcccg ggcagcaaac
    27841 ttacgcgagt agccgcgcgc aatcaggaac ccgccaatac cgccgaggac cgcaccacat
    27901 aatgctgcga cgtcagaagc aaagagtagc tgaaatagcg aagcgatgag gaataatccc
    27961 accagcggcg acatataaac cagtaatgcg gagctaagca ggctgccttc ggcgatcccc
    28021 aattccactt tttgccccgg cactaacggt tcatcacagg gtacgacaat ggtatgcgtg
    28081 gtttgcgggc caagtttatt caacacgcgg ctaccgcaac cggcgcgtga agcgcagctg
    28141 ctgcatgaag ctttaacatc acaactgacc agcgcctgcc cgttttgcca ggagacgacg
    28201 gtagcccact ctttgatcat tgcgctgccc cgaacttaat attctcggca atgcgtttcg
    28261 ccgtttgcgg cggcagttca ccgacaatgg tgatttcggc gttatcacgt acgcttgtac
    28321 tgacggttct gcgtccggtg cgcaacatct gatcggtgct cgatggcgta gcgcggttaa
    28381 cgtttaccga gaagctgaat aatccgtcag aatagagacg tgattcgata ggcatgttgt
    28441 ccatcgtcgg tagcggacgt cgactactgg aaacttcgct aaaaccctgt ggcaaccagg
    28501 ttggcgtcca gctgaattta gctttttcac ctacaggaac agaaagcaac ggcggcaaat
    28561 ttgccttcgc cagcgtctgc atactgctgc tgatatcctg attgacgtta aaagcaatca
    28621 cgcgaaattg ttccagcgtt tcaccatcgc gatcaaggag atcaacccgc atcggtaatt
    28681 tcgattcggt gtccatccac acgatgtagc tgtagcgtgt accatctcgg gcaaccacgc
    28741 gaatgacttc gcaaagacga tcagcaatac gcgtgcgccc gacggagata aagtcgtagt
    28801 aaggagaaag gcgtttgaaa tcggtataga tgagcgatgg cagagaatca acaatgtaat
    28861 cgccattaag cgtgaacggt tcaagtcccg gttcaaaata gctgatttca tcgccgcgct
    28921 gtaccacttc ccggcgcggg ccatccattt gcaacaattg tgcaagagga cggttatcga
    28981 ggcgtgcatg tcgataacgc agagactcaa caccctgttt attgatgctg atgaatgaca
    29041 gctcgtaatt cagtgactga ctggccaggt tcatctgctg taataacgcc ccggacgcgg
    29101 gagtggccga ggcgttagca gagaataaca ggctacctgt cactaatgac atggcaaacc
    29161 aaagttgctt cattactgcg attgcgttcc taaagtttga attcctggca cctgtacagc
    29221 ggcttgctgg gtttgcgcct gctcaaactg aagctgttca gagtggagtc ggcgttgcag
    29281 ttcgtaatcc tgcaacattg cattaatgcg acgacgctgc tcctgtacct gctgctgttg
    29341 accattgttt gcggtcgctt cagaaggtac tcccaggctt accgggctgg ctttacccat
    29401 catcggcagt gtattaaata ccggcgtttc gggctgctgg gacgtttcag attgtccatt
    29461 atagtgctgg acgccaacga taactgcaag cgatacgcat gctgctacgc ccatttgggt
    29521 aagctgtgcc gcccacggac gtactttctg ccagaatggc attttctgcc attgatgcgg
    29581 cgcaggctgg gcttccggga tcaatgtcgc cggttgacgt actggctctt cttcaatggc
    29641 ggccatcacg cgtgaagaga tatcgaaatg gagcacctcg ggagtatcac cccgcattga
    29701 gtcacggatt aagtgatagc tttcccaagt tttctgcatt tctgggttat gagccagttc
    29761 gttaagcagc tcactatcca gcgtttcgcc atccattaaa gcggaaagtt gttctttctg
    29821 catgcctaat acccttatcc agtatcccgc tatcgtcaac gcctgataag cggttgaact
    29881 ttgttatcaa tagcttccct cgctcggaag atacgtgaac gcaccgtacc taccggacaa
    29941 tccatgatag cggctatctc ttcatagctc aggccatcca gctcccgcaa ggttattgcc
    30001 atgcgcaaat cttccgggag ggactcaata gttcggaaaa ctatctgtct cagttcttct
    30061 gacaacatta agttctcagg gttcgaaatt tctttcaacg cgccgccact ttcgaagttt
    30121 tcagcttcaa tggcatccac atcactggaa ggtggacgac gcccctgagc aaccaggtaa
    30181 tttttcgctg tatttacagc aatccgatac agccatgtat aaaaagcgct atctccccgg
    30241 aacgaatcca gcgcacgata ggctttaata aaagcttctt gtaccacatc gggaacatca
    30301 cccgacggca catagcggga aaccagactc gccactttat gctgatagcg cactaccagt
    30361 aagttaaagg ctttctgatc tcccttctgg acccgttcaa ccaggacctg gtccgttaac
    30421 tgctcgctca tccgaggtaa agtctcccca aaccaaattt ccacgcgcta tcgaaacgcc
    30481 actccattag ctgcaatttg agcaagcaaa gggttagagt gtctcgtttt tgtaaagttc
    30541 cgtaacgcat ctgtttttgt ttgtcatgct gtagacggat cattatctat cattataagt
    30601 ctacagaatc tgaacatcgc attatctgtg tagaaatgcc catttaactg cctgaagagt
    30661 aacccaacgg cctttttatt tcaccaccta atcctccacc agccagtaac ttctcttttt
    30721 ctcgccgccc tgcatcagcg tgtttagcaa ctgtaacaaa tattaaaata gcaggtgttt
    30781 attcgcacaa catgatgcta tgctgaccaa actgtgttta gtaaattaaa caaagaaaat
    30841 gaatactctc cctgaacatt catgtgacgt gttgattatt ggtagcggcg cagccggact
    30901 ttcactggcg ctacgcctgg ctgaccagca tcaggtcatc gttctaagta aaggcccggt
    30961 aacggaaggt tcaacatttt atgcccaggg cggtattgcc gccgtgtttg atgaaactga
    31021 cagcattgac tcgcatgtgg aagacacatt gattgccggg gctggtattt gcgatcgcca
    31081 tgcagttgaa tttgtcgcca gcaatgctcg ttcctgtgtg caatggttaa ttgaccaggg
    31141 ggttttgttt gatacccacg ttcaaccgaa tggcgaagaa agctaccatc tgacccgtga
    31201 aggaggacat agtcaccgtc gtattcttca tgccgccgac gccaccggta gagaagtaca
    31261 atccacgctg gtgagcaagg cgcagaacca tccgaatatt cgtgtgctgg agcgcagcaa
    31321 cgcagttgat ctgattgtct ctgacaaaat tggcctgccg ggcacgcgac g
//
LOCUS       DAJVUP010000029        30870 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.029, whole genome shotgun sequence.
ACCESSION   DAJVUP010000029 DAJVUP010000000
VERSION     DAJVUP010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30870
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.029"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            248..631
                     /gene="secE"
                     /locus_tag="OQQ75_001249"
     CDS             248..631
                     /gene="secE"
                     /locus_tag="OQQ75_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HCS1975647.1"
                     /translation="MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            633..1178
                     /gene="nusG"
                     /locus_tag="OQQ75_001250"
     CDS             633..1178
                     /gene="nusG"
                     /locus_tag="OQQ75_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HCS1975648.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            1338..1766
                     /gene="rplK"
                     /locus_tag="OQQ75_001251"
     CDS             1338..1766
                     /gene="rplK"
                     /locus_tag="OQQ75_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HCS1975649.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGAGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            1770..2474
                     /gene="rplA"
                     /locus_tag="OQQ75_001252"
     CDS             1770..2474
                     /gene="rplA"
                     /locus_tag="OQQ75_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HCS1975650.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASVN"
     gene            2887..3384
                     /gene="rplJ"
                     /locus_tag="OQQ75_001253"
     CDS             2887..3384
                     /gene="rplJ"
                     /locus_tag="OQQ75_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HCS1975651.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            3451..3816
                     /gene="rplL"
                     /locus_tag="OQQ75_001254"
     CDS             3451..3816
                     /gene="rplL"
                     /locus_tag="OQQ75_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HCS1975652.1"
                     /translation="MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKALEEAGAEVEVK"
     gene            4136..8164
                     /gene="rpoB"
                     /locus_tag="OQQ75_001255"
     CDS             4136..8164
                     /gene="rpoB"
                     /locus_tag="OQQ75_001255"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HCS1975653.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            8241..12464
                     /gene="rpoC"
                     /locus_tag="OQQ75_001256"
     CDS             8241..12464
                     /gene="rpoC"
                     /locus_tag="OQQ75_001256"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HCS1975654.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK
                     TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA
                     PAAPQVTAEDASASLAELLNAGLGGSDNE"
     gene            12677..13216
                     /locus_tag="OQQ75_001257"
     CDS             12677..13216
                     /locus_tag="OQQ75_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-shock protein C"
                     /protein_id="HCS1975655.1"
                     /translation="MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYR
                     FWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPES
                     NVIHAGYGSYAVIEVDLDGGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKGKSVK
                     FFTIAYNLLRNKQLPQPSK"
     gene            complement(13671..14759)
                     /gene="thiH"
                     /locus_tag="OQQ75_001258"
     CDS             complement(13671..14759)
                     /gene="thiH"
                     /locus_tag="OQQ75_001258"
                     /EC_number="4.1.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HCS1975656.1"
                     /translation="MKTFSDRWRQLDWDDIRLRINGKTAVDVERALNASQFTRDDMMA
                     LLSPAASGYLEQLAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDEADIARESAAIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQ
                     PLAKTEYAELKQLGLDGVMVYQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDNWRVDCYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMD
                     ERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGGYADNHP
                     ELEQFSPHDDRRPEAVAAALTAQGLQPV"
     gene            complement(14756..15526)
                     /gene="thiG"
                     /locus_tag="OQQ75_001259"
     CDS             complement(14756..15526)
                     /gene="thiG"
                     /locus_tag="OQQ75_001259"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418418.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HCS1975657.1"
                     /translation="MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKR
                     VDLRQHNDAILEPLIAAGVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIPPDA
                     RWLLPDPIETLKAAEMLVQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG
                     LETRAMLEIIIQQATVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAK
                     AFRLAVEAGLLARQSGPGSRSHFAHATSPLTGFLEASA"
     gene            complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="OQQ75_001260"
     CDS             complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="OQQ75_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HCS1975658.1"
                     /translation="MQILFNDQPMQCATGQTVHELLEQLDQRQAGAALAINQQIVPRE
                     QWTQHILQDGDQILLFQVIAGG"
     gene            complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="OQQ75_001261"
                     /pseudo
     CDS             complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="OQQ75_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709786.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole biosynthesis adenylyltransferase ThiF"
     gene            complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="OQQ75_001262"
     CDS             complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="OQQ75_001262"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709787.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HCS1975659.1"
                     /translation="MYQPDFPPVPFRLGLYPVVDSVQWIERLLDAGVRTLQLRIKDRR
                     DEEVEADVVAAIALGRRYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAG
                     LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYP
                     TVAIGGISLARAPAVIATGVGSIAVISAITQAADWRLATAQLLEIAGVGDE"
     gene            complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="OQQ75_001263"
     CDS             complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="OQQ75_001263"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HCS1975660.1"
                     /translation="MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYLTGTHSGVRV
                     PMREIQLSPTLIGGSKEQPQFEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWID
                     ARGDTEELTVRSSDYTKARLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMSFGARLPENITAEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFREICEICAAYDVSLSL
                     GDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE
                     LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAATQTIEMGMADMSENFRARGGEI
                     YLRKEEA"
     regulatory      complement(19071..19171)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="OQQ75_001264"
     CDS             complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="OQQ75_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HCS1975661.1"
                     /translation="MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQ
                     IMDYYDSSLETAIDHDNYLEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA"
     gene            19795..20568
                     /gene="nudC"
                     /locus_tag="OQQ75_001265"
     CDS             19795..20568
                     /gene="nudC"
                     /locus_tag="OQQ75_001265"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HCS1975662.1"
                     /translation="MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRAL
                     QIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVVLFQLAGRGVQLAEFYRSHKYCGYCG
                     HEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE"
     gene            20608..21672
                     /gene="hemE"
                     /locus_tag="OQQ75_001266"
     CDS             20608..21672
                     /gene="hemE"
                     /locus_tag="OQQ75_001266"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HCS1975663.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSP
                     VTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP
                     PEHAGVFVEAVHRLSEQYHR"
     gene            21682..22353
                     /gene="nfi"
                     /locus_tag="OQQ75_001267"
     CDS             21682..22353
                     /gene="nfi"
                     /locus_tag="OQQ75_001267"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HCS1975664.1"
                     /translation="MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFV
                     DGHGISHPRRLGVASHFGLMVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRY
                     TANQP"
     gene            22396..22986
                     /locus_tag="OQQ75_001268"
     CDS             22396..22986
                     /locus_tag="OQQ75_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="HCS1975665.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVVLSE
                     LVHSRLSGETLEHAVEVSKTSITTVAMLEMTQVGREMSDEELKENPAVEQEWDIQWEI
                     FRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ"
     gene            23173..23445
                     /gene="hupA"
                     /locus_tag="OQQ75_001269"
     CDS             23173..23445
                     /gene="hupA"
                     /locus_tag="OQQ75_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-alpha"
                     /protein_id="HCS1975666.1"
                     /translation="MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            23458..24153
                     /locus_tag="OQQ75_001270"
     CDS             23458..24153
                     /locus_tag="OQQ75_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="HCS1975667.1"
                     /translation="MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASG
                     FAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPV
                     NIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQG
                     RWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVAN
                     SDFCRWQPNEKTF"
     gene            complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="OQQ75_001271"
     CDS             complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="OQQ75_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="HCS1975668.1"
                     /translation="MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQ
                     QTAWQKIHNDFYAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLD
                     ELRVKRDIAMAEAGIPRGAGMGMGYGGCGGGGHMGMGHW"
     gene            24818..26194
                     /gene="zraS"
                     /locus_tag="OQQ75_001272"
     CDS             24818..26194
                     /gene="zraS"
                     /locus_tag="OQQ75_001272"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="HCS1975669.1"
                     /translation="MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAA
                     ARQTLLEKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQGTI
                     VMHSNSGMVGKQLYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFAAGMHR
                     MRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFALATVLLASVLSFFWYRRY
                     LRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL
                     AQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRF
                     TANDTLPEIQADPDRLTQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKG
                     IAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVN
                     ITRKDPQG"
     gene            26191..27515
                     /gene="zraR"
                     /locus_tag="OQQ75_001273"
                     /pseudo
     CDS             26191..27515
                     /gene="zraR"
                     /locus_tag="OQQ75_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418432.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
     gene            complement(27512..28801)
                     /gene="purD"
                     /locus_tag="OQQ75_001274"
     CDS             complement(27512..28801)
                     /gene="purD"
                     /locus_tag="OQQ75_001274"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HCS1975670.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLE
                     GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGV
                     VMAAGGYPGDYRTGDVIHGLLLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGH
                     TVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN"
     gene            complement(28813..30402)
                     /gene="purH"
                     /locus_tag="OQQ75_001275"
     CDS             complement(28813..30402)
                     /gene="purH"
                     /locus_tag="OQQ75_001275"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HCS1975671.1"
                     /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL
                     AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVV
                     VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVK
                     EFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRD
                     LGMVGAEELRVVTQRQPTEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEV
                     IAAADEHGIAMLFTDMRHFRH"
BASE COUNT         7313 a         7973 c         8422 g         7162 t
ORIGIN      
        1 gcaaaagttc tgagctaatt gccgataaca tttgactcaa tgcgcactaa aagggcatca
       61 tttgatgccc tttttgcacg ctttcgtacc agaacctggc tcatcagtga ttttctttgt
      121 cataatcatt gctgagacag gctctgttga gggcgtataa tccgaaaagc taatacgcgt
      181 ttcgatttgg tttgcctcgc gatcgcgggg tgaaaatgtt tgtagaaaac ttctgacagg
      241 ttggtttatg agtgcgaata ccgaagctca aggaagcggg cgcggcctgg aagcgatgaa
      301 gtgggtcgtt gtggtggcat tgctcttggt ggcgattgtc ggcaactacc tttatcgcga
      361 cattatgctg ccgctgcgtg cgctggccgt agtaattctg attgctgcag cgggtggtgt
      421 cgcgctgtta acgacaaaag gtaaagctac cgttgctttt gcccgtgaag cgcgtaccga
      481 agtccgtaag gtcatttggc cgactcgcca ggaaacattg cacaccacgc tgattgtggc
      541 tgcggttacc gcagtaatgt cactgatcct gtggggactg gatggtattc tggttcgcct
      601 ggtatccttt atcactggcc tgaggttctg agatgtctga agctcctaaa aagcgctggt
      661 acgtcgttca ggcgttttcc ggttttgaag gccgcgtagc aacgtcgctg cgtgagcata
      721 tcaaattaca caacatggaa gatttgtttg gtgaagtcat ggtaccaacc gaagaagtgg
      781 ttgaaatccg tggcggtcag cgtcgcaaaa gcgaacgtaa attcttccct ggctacgtcc
      841 tcgttcagat ggtgatgaac gacgcgagct ggcacctggt gcgcagcgta ccgcgagtga
      901 tgggcttcat cggcggtact tccgatcgtc ctgcgccaat cagcgataaa gaagtcgatg
      961 cgattatgaa ccgcctgcag caggttggtg ataagccgcg tccgaaaacg ctgtttgaac
     1021 cgggtgaaat ggtccgtgtt aatgatggtc cgttcgctga cttcaacggt gttgttgaag
     1081 aagtggatta cgagaaatct cgtctgaaag tgtctgtttc tatcttcggt cgtgcgaccc
     1141 cggtagagct ggacttcagc caggttgaaa aagcctaacc cagcgatcaa aaaagcggcg
     1201 atttaatcgt tgcacaaggc gcgagattgg aatacaattt cgcgcctttt atttttatgg
     1261 gccttgcccg taaaaacgat tttttatatc acggggagcc tctcagaggc gttattaccc
     1321 aacttgagga atttataatg gctaagaaag tacaagccta tgtcaagctg caggttgcag
     1381 ctggtatggc taacccgagt ccgccagtag gtccggctct gggtcagcag ggcgtaaaca
     1441 tcatggaatt ctgcaaagcg ttcaacgcaa aaactgattc catcgaaaaa ggtctgccga
     1501 ttccggtagt aatcaccgtt tacgctgacc gttctttcac tttcgttacc aagaccccgc
     1561 cggcagcagt tctgctgaaa aaagcggctg gtatcaagtc tggtgccggt aagccgaaca
     1621 aagacaaagt gggtaaaatt tcccgcgctc agctgcagga aatcgcgcag accaaagctg
     1681 ccgacatgac tggtgccgac attgaagcga tgactcgctc catcgaaggt actgcacgtt
     1741 ccatgggcct ggtagtggag gactaagaaa tggctaaact gaccaagcgc atgcgtgtta
     1801 tccgcgagaa agttgatgca accaaacagt acgacatcaa cgaagctatc gcactgctga
     1861 aagagctggc gactgctaaa ttcgtagaaa gcgtggacgt agctgttaac ctcggcatcg
     1921 acgctcgtaa atctgaccag aacgtacgtg gtgcaactgt actgccgcac ggtactggcc
     1981 gttccgttcg cgtagccgta tttacccaag gtgcaaacgc tgaagctgct aaagctgcag
     2041 gcgcagaact ggtaggtatg gaagatctgg ctgaccagat caagaaaggc gaaatgaact
     2101 ttgacgttgt tattgcttct ccggatgcaa tgcgcgttgt tggccagctg ggccaggttc
     2161 tgggtccgcg cggcctgatg ccaaacccga aagtgggtac tgtaacaccg aacgttgctg
     2221 aagcggttaa aaacgctaaa gctggccagg ttcgttaccg taacgacaaa aacggcatca
     2281 tccacaccac catcggtaaa gtggactttg acgctgacaa actgaaagaa aacctggaag
     2341 ctctgctggt tgcgctgaaa aaagcaaaac cgactcaggc gaaaggcgtg tacatcaaga
     2401 aagttagcat ctccaccacc atgggtgcag gtgttgcagt tgaccaggct ggcctgagcg
     2461 cttctgtaaa ctaatgcctt tacgtgggcg gtgattttgt ctacaatctt acccccacgt
     2521 ataatgctta atgcagacgt atatccgaga tattcgggtt gtggcaaggc ggcaactgag
     2581 tgagtcgcca agagcatagc taactatgtg actggtgcga atgaaggaag ccaacgccgc
     2641 cacaagttga atagcgacgg atagaaaaga tttgttcgtt ggagcttggc ctatccaggc
     2701 ctccgtcgaa gaccgcagga gtttcgcaag aaacttaatc ccctgcgtag acggtgacag
     2761 aacgctaaga ttattctttt atattctggc ttgtttctgc tcaccgtaat taagacgctc
     2821 tctccgtttg gaggagtgaa gtgagttcca gagattttct ctggcaaaca tccaggagca
     2881 aagctaatgg ctttaaatct tcaagacaaa caagcgattg ttgctgaagt cagcgaagta
     2941 gccaaaggcg cgctgtctgc agtagttgcg gattcccgtg gcgtaactgt agataaaatg
     3001 actgaactgc gtaaagcagg tcgcgaagct ggcgtataca tgcgtgttgt tcgtaacacc
     3061 ctgctgcgcc gtgctgttga aggtactccg ttcgagtgcc tgaaagacgc gtttgttggt
     3121 ccgaccctga ttgcatactc tatggaacac ccgggcgctg ctgctcgtct gttcaaagag
     3181 ttcgcgaaag cgaatgcaaa atttgaggtc aaagccgctg cctttgaagg tgagctgatc
     3241 ccggcgtctc agatcgaccg cctggcaact ctgccgacct acgaagaagc aattgcacgc
     3301 ctgatggcaa ccatgaaaga agcttcggct ggcaaactgg ttcgtactct ggctgctgta
     3361 cgcgatgcga aagaagctgc ttaatcgcag ttatcttttt aacgcattcg cttacgtata
     3421 aacttattct gatattcagg aacaatttaa atgtctatca ctaaagatca aatcattgaa
     3481 gcagttgcag ctatgtctgt aatggacgtt gtagaactga tctctgcaat ggaagaaaaa
     3541 ttcggtgttt ccgctgctgc tgctgtagct gtagctgctg gcccggttga agctgctgaa
     3601 gaaaaaactg aattcgacgt aattctgaaa gctgctggcg ctaacaaagt tgctgttatc
     3661 aaagcagtac gtggcgcaac tggcctgggt ctgaaagaag ctaaagacct ggtagaatct
     3721 gcaccggctg ctctgaaaga aggcgtgagc aaagacgacg cagaagcact gaaaaaagct
     3781 ctggaagaag ctggcgctga agttgaagtt aaataagcca acccttccgg ttgcagcctg
     3841 agaaatcagg ctgatggctg gtgacttttt agtcaccagc ctttttgcgc tgtaaggcgc
     3901 cagtagcgtt tcacactgtt tgactactgc tgtgcctttc aatgcttgtt tctatcgacg
     3961 acttaatata ctgcgacagg acgtccgttc tgtgtaaatc gcaatgaaat ggtttaagcg
     4021 tgatagcaac aggcattgcg gaaagtgttc cattttccgg tcaacaaaat agtgttgcac
     4081 aaactgtccg ctcaatggac agatgggtcg acttgtcagc gagctgagga accctatggt
     4141 ttactcctat accgagaaaa aacgtattcg taaggatttt ggtaaacgtc cacaagttct
     4201 ggatgtacct tatctccttt ctatccagct tgactcgttt cagaaattta tcgagcaaga
     4261 tcctgaaggg cagtatggtc tggaagcagc tttccgttcc gtattcccga ttcagagcta
     4321 cagcggtaat tccgagctgc aatacgtcag ctaccgcctt ggcgaaccgg tgtttgacgt
     4381 ccaggaatgt caaatccgtg gcgtgaccta ttccgcaccg ctgcgcgtta aactgcgtct
     4441 ggtgatctat gagcgcgaag cgccggaagg caccgtaaaa gacattaaag aacaagaagt
     4501 ctacatgggc gaaattccgc tcatgacaga caacggtacc tttgttatca acggtactga
     4561 gcgtgttatc gtttcccagc tgcaccgtag tccgggcgtc ttctttgact ccgacaaagg
     4621 taaaacccac tcttcgggta aagtgctgta taacgcgcgc atcatccctt accgtggttc
     4681 ctggctggac ttcgaattcg atccgaagga caacctgttc gtacgtatcg accgtcgccg
     4741 taaactgcct gcgaccatca ttctgcgcgc cctgaactac accacagagc agatcctcga
     4801 cctgttcttt gaaaaagtta tctttgaaat ccgtgataac aagctgcaga tggaactggt
     4861 gccggaacgc ctgcgtggtg aaaccgcatc ttttgacatc gaagctaacg gtaaagtgta
     4921 cgtagaaaaa ggccgccgta tcactgcgcg ccacattcgc cagctggaaa aagacgacgt
     4981 caaacttatc gaagtcccgg ttgagtacat cgcaggtaaa gtggttgcta aagactatat
     5041 tgatgagtct accggcgagc tgatctgcgc agcgaacatg gagctgagcc tggatctgct
     5101 ggctaagctg agccagtctg gtcacaagcg tatcgaaacg ctgttcacca acgatctgga
     5161 tcacggccca tatatctctg aaaccttacg tgtcgaccca actaacgacc gtctgagcgc
     5221 actggtagaa atctaccgca tgatgcgccc tggcgagccg ccgactcgtg aagcagctga
     5281 aagcctgttc gagaacctgt tcttctccga agaccgttat gacttgtctg cggttggtcg
     5341 tatgaagttc aaccgttctc tgctgcgcga agaaatcgaa ggttccggta tcctgagcaa
     5401 agacgacatc attgatgtta tgaaaaagct catcgatatc cgtaacggta aaggcgaagt
     5461 cgatgatatc gaccacctcg gcaaccgtcg tatccgttcc gttggcgaaa tggcggaaaa
     5521 ccagttccgc gttggcttgg tacgtgtaga gcgtgcggtg aaagagcgtc tgtctctggg
     5581 cgatctggat accctgatgc ctcaggatat gatcaacgcc aagccgattt ccgcagcagt
     5641 gaaagagttc ttcggttcca gccagctgtc tcagtttatg gaccagaaca acccgctgtc
     5701 tgagattacg cacaaacgtc gtatctccgc actcggccca ggcggtctga cccgtgaacg
     5761 tgcaggcttc gaagttcgag acgtacaccc gactcactac ggtcgcgtat gtccaatcga
     5821 aacccctgaa ggtccgaaca tcggtctgat caactctctg tccgtgtacg cacagactaa
     5881 cgaatacggc ttccttgaga ctccgtatcg taaagtgacc gacggtgttg taactgacga
     5941 aattcactac ctgtctgcta tcgaagaagg caactacgtt atcgcccagg cgaactccaa
     6001 cctggatgaa gaaggccact tcgtagaaga cctggtaact tgccgtagca aaggcgaatc
     6061 cagcttgttc agccgcgacc aggttgacta catggacgta tccacccagc aggtggtatc
     6121 cgtcggtgcg tccctgatcc cgttcctgga acacgatgac gccaaccgtg cattgatggg
     6181 tgcgaacatg caacgtcagg ccgttccgac tctgcgcgct gataagccgc tggttggtac
     6241 tggtatggaa cgtgctgttg ccgttgactc cggtgtaact gcggtagcta aacgtggtgg
     6301 tgtcgttcag tacgtggatg cttcccgtat cgttatcaaa gttaacgaag acgagatgta
     6361 tccgggtgaa gcaggtatcg acatctacaa cctgaccaaa tacacccgtt ctaaccagaa
     6421 cacctgtatc aaccagatgc cgtgtgtgtc tctgggtgaa ccggttgaac gtggcgacgt
     6481 gctggcagac ggtccgtcca ccgacctcgg tgaactggcg cttggtcaga acatgcgcgt
     6541 agcgttcatg ccgtggaatg gttacaactt cgaagactcc atcctcgtat ccgagcgtgt
     6601 tgttcaggaa gaccgtttca ccaccatcca cattcaggaa ctggcgtgtg tgtcccgtga
     6661 caccaagctg gggccggaag agatcaccgc tgacatcccg aacgtgggtg aagctgcgct
     6721 ctccaaacta gatgaatccg gtatcgttta cattggtgcg gaagtgaccg gtggcgacat
     6781 tctggttggt aaggtaacgc cgaaaggtga aactcagctg accccagaag aaaaactgct
     6841 gcgtgcgatc ttcggtgaga aagcctctga cgttaaagac tcttctctgc gcgtaccaaa
     6901 cggtgtatcc ggtacggtta tcgacgttca ggtctttact cgcgatggcg tagaaaaaga
     6961 caaacgtgcg ctggaaatcg aagaaatgca gctcaaacag gcgaagaaag acctgtctga
     7021 agaactgcag atcctcgaag cgggtctgtt cagccgtatc cgtgctgtgc tggtagccgg
     7081 tggcgttgaa gctgagaagc tcgacaaact gccgcgcgat cgctggctgg agctgggcct
     7141 gacagacgaa gagaaacaaa atcagctgga acagctggct gagcagtatg acgaactgaa
     7201 acacgagttc gagaagaaac tcgaagcgaa acgccgcaaa atcacccagg gcgacgatct
     7261 ggcaccgggc gtgctgaaga ttgttaaggt atatctggcg gttaaacgcc gtatccagcc
     7321 tggtgacaag atggcaggtc gtcacggtaa caagggtgta atttctaaga tcaacccgat
     7381 cgaagatatg ccttacgatg aaaacggtac gccggtagac atcgtactga acccgctggg
     7441 cgtaccgtct cgtatgaaca tcggtcagat cctcgaaacc cacctgggta tggctgcgaa
     7501 aggtatcggc gacaagatca acgccatgct gaaacagcag caagaagtcg cgaaactgcg
     7561 cgaattcatc cagcgtgcgt acgatctggg cgctgacgtt cgtcagaaag ttgacctgag
     7621 taccttcagc gatgaagaag ttatgcgtct ggctgaaaac ctgcgcaaag gtatgccaat
     7681 cgcaacgccg gtgttcgacg gtgcgaaaga agcagaaatt aaagagctgc tgaaacttgg
     7741 cgacctgccg acttccggtc agatccgcct gtacgatggt cgcactggtg aacagttcga
     7801 gcgtccggta accgttggtt acatgtacat gctgaaactg aaccacctgg tcgacgacaa
     7861 gatgcacgcg cgttccaccg gttcttacag cctggttact cagcagccgc tgggtggtaa
     7921 ggcacagttc ggtggtcagc gtttcgggga gatggaagtg tgggcgctgg aagcatacgg
     7981 cgcagcatac accctgcagg aaatgctcac cgttaagtct gatgacgtga acggtcgtac
     8041 caagatgtat aaaaacatcg tggacggcaa ccatcagatg gagccgggca tgccagaatc
     8101 cttcaacgta ttgttgaaag agattcgttc gctgggtatc aacatcgaac tggaagacga
     8161 gtaattctcg ctcaaacagg tcactgctgt cgggttaaaa cccggcagcg gattgtgcta
     8221 actccgacgg gagcaaatcc gtgaaagatt tattaaagtt tctgaaagcg cagactaaaa
     8281 ccgaagagtt tgatgcgatc aaaattgctc tggcttcgcc agacatgatc cgttcatggt
     8341 ctttcggtga agttaaaaag ccggaaacca tcaactaccg tacgttcaaa ccagaacgtg
     8401 acggcctttt ctgcgcccgt atctttgggc cggtaaaaga ttacgagtgc ctgtgcggta
     8461 agtacaagcg cctgaaacac cgtggcgtca tctgtgagaa gtgcggcgtt gaagtgaccc
     8521 agactaaagt acgccgtgag cgtatgggcc acatcgaact ggcttccccg actgcgcaca
     8581 tctggttcct gaaatcgctg ccgtcccgta tcggtctgct gctcgatatg ccgctgcgcg
     8641 atatcgaacg cgtactgtac tttgaatcct atgtggttat cgaaggcggt atgaccaacc
     8701 tggaacgtca gcagatcctg actgaagagc agtatctgga cgcgctggaa gagttcggtg
     8761 acgaattcga cgcgaagatg ggtgcggaag caatccaggc tctgctgaag agcatggatc
     8821 tggagcaaga gtgcgaacag ctgcgcgaag agctgaacga aaccaactcc gaaaccaagc
     8881 gtaaaaagct gaccaagcgt atcaaactgc tggaagcgtt cgttcagtct ggtaacaaac
     8941 cagagtggat gatcctgacc gttctgccgg tactgccgcc agatctgcgt ccgctggttc
     9001 cgctggatgg tggtcgtttc gcgacttctg acctgaacga tctgtatcgt cgcgtcatta
     9061 accgtaacaa ccgtctgaaa cgtctgctgg atctggctgc gccggacatc atcgtacgta
     9121 acgaaaaacg tatgctgcag gaagcggtag acgccctgct ggataacggt cgtcgcggtc
     9181 gtgcgatcac cggttctaac aagcgtcctc tgaaatcttt ggccgacatg atcaaaggta
     9241 aacagggtcg tttccgtcag aacctgctcg gtaagcgtgt tgactactcc ggtcgttctg
     9301 taatcaccgt aggtccatac ctgcgtctgc atcagtgcgg tctgccgaag aaaatggcgc
     9361 tggagctgtt caaaccgttc atctacggca agctggaact gcgtggtctt gctaccacca
     9421 ttaaagctgc gaagaaaatg gttgagcgcg aagaagctgt cgtttgggat atcctggacg
     9481 aagttatccg cgaacacccg gtactgctga accgtgcacc gactctgcac cgtctgggta
     9541 tccaggcatt tgaaccggta ctgatcgaag gtaaagctat ccagctgcac ccgctggttt
     9601 gtgcggcata taacgccgac ttcgatggtg accagatggc tgttcacgta ccgctgacgc
     9661 tggaagccca gctggaagcg cgtgcgctga tgatgtctac caacaacatc ctgtccccgg
     9721 cgaacggcga accaatcatc gttccgtctc aggacgttgt tctgggtctg tactatatga
     9781 cccgtgactg tgttaacgcc aaaggcgaag gcatggtgct gactggcccg aaagaagcag
     9841 aacgtctgta tcgctctggt ctggcttctc tgcatgcgcg cgttaaagtg cgtatcaccg
     9901 agtatgaaaa agatgcaaac ggtgaattag tagcgaaaac cagcctgaaa gacacgactg
     9961 ttggccgtgc cattctgtgg atgattgtac cgaaaggtct gccttactcc atcgtcaacc
    10021 aggcgctggg taaaaaagca atctccaaaa tgctgaacac ctgctaccgc attctcggtc
    10081 tgaaaccgac cgttattttt gcggaccaga tcatgtacac cggcttcgcc tatgcagcgc
    10141 gttctggtgc atctgttggc atcgatgaca tggtcatccc ggagaagaaa cacgaaatca
    10201 tctccgaggc agaagcagaa gttgctgaaa ttcaggagca gttccagtct ggtctggtaa
    10261 ctgcgggcga acgctacaac aaagttatcg atatctgggc tgcggcgaac gatcgtgtat
    10321 ccaaagcgat gatggataac ctgcaaactg aaaccgtgat taaccgtgac ggtcaggaag
    10381 agaagcaggt ttccttcaac agcatctaca tgatggccga ctccggtgcg cgtggttctg
    10441 cggcacagat tcgtcagctt gctggtatgc gtggtctgat ggcgaagccg gatggctcca
    10501 tcatcgaaac gccaatcacc gcgaacttcc gtgaaggtct gaacgtactc cagtacttca
    10561 tctccaccca cggtgctcgt aaaggtctgg cggataccgc actgaaaact gcaaactccg
    10621 gttacctgac tcgtcgtctg gttgacgtgg cgcaggacct ggtggttacc gaagacgatt
    10681 gtggtaccca tgaaggtatc atgatgactc cggttatcga aggtggtgat gttaaagagc
    10741 cgctgcgcga tcgcgtactg ggtcgtgtaa ctgctgaaga cgttctgaag ccgggtactg
    10801 ctgatatcct cgttccgcgc aacacgctgc tgcacgaaca gtggtgtgac ctgctggaag
    10861 agaactctgt cgacgcggtt aaagtacgtt ctgttgtatc ttgtgacacc gactttggtg
    10921 tatgtgcgca ctgctacggt cgtgacctgg cgcgtggcca catcatcaac aagggtgaag
    10981 caatcggtgt tatcgcggca cagtccatcg gtgaaccggg tacacagctg accatgcgta
    11041 cgttccacat cggtggtgcg gcatctcgtg cggctgctga atccagcatc caggtgaaaa
    11101 acaaaggtag catcaagctc agcaacgtga agtcggttgt gaactccagc ggtaaactgg
    11161 ttatcacttc ccgtaatact gaactgaaac tgatcgacga attcggtcgt accaaagaaa
    11221 gctacaaagt accttacggt gcggtactgg cgaaaggcga tggcgaacag gttgctggcg
    11281 gcgaaaccgt tgcaaactgg gacccgcaca ccatgccggt tatcaccgaa gtaagcggtt
    11341 ttgtacgctt tactgacatg atcgacggtc agaccattac tcgtcagaca gacgaattga
    11401 ccggtctgtc ttcgctggtg gttctggatt ccgcagaacg taccgcaggt ggtaaagatc
    11461 tgcgtccggc actgaaaatc gttgatgctc agggtaacga cgttctgatt ccgggtaccg
    11521 atatgcctgc gcagtacttc ctgccgggta aagcgattgt tcagctggaa gatggcgtac
    11581 agatcagctc tggtgacacc ctggcgcgta ttccgcagga atccggcggt accaaggaca
    11641 tcaccggtgg tctgccgcgc gttgcggacc tgttcgaagc acgtcgtccg aaagagccgg
    11701 caatcctggc tgaaatcagc ggtatcgttt ccttcggtaa agaaaccaaa ggtaaacgtc
    11761 gtcttgttat caccccggta gacggtagcg atccgtacga agagatgatt ccgaaatggc
    11821 gtcagctcaa cgtgttcgaa ggtgaacgtg tagaacgtgg tgacgtaatt tccgacggtc
    11881 cggaagcgcc gcacgacatt ctgcgtctgc gtggtgttca tgctgttact cgttacatcg
    11941 ttaacgaagt acaggacgta taccgtctgc agggcgttaa gattaacgat aaacacatcg
    12001 aagttatcgt tcgtcagatg ctgcgtaaag ctaccatcgt taacgcgggc agctccgact
    12061 tcctggaagg cgaacaggtt gaatactctc gcgtcaagat cgcaaaccgc gaactggaag
    12121 cgaacggcaa agtgggtgca acttactccc gcgatctgct gggtatcacc aaagcgtctc
    12181 tggcaaccga gtccttcatc tccgcggcat cgttccagga gaccactcgc gtgctgaccg
    12241 aagcagccgt tgcgggcaaa cgcgacgaac tgcgcggcct gaaagagaac gttatcgtgg
    12301 gtcgtctgat cccggcaggt accggttacg cgtaccacca ggatcgtatg cgtcgccgtg
    12361 ctgcgggtga agctccggct gcaccgcagg tgactgcaga agacgcatct gccagcctgg
    12421 cagaactgct gaacgcaggt ctgggcggtt ctgataacga gtaatcgtta atccgcaaat
    12481 aacgtaaaaa cccgcttcgg cgggtttttt tatgggggga gtttagggaa agagcatttg
    12541 tcagaatatt taaggaattt ctgaatactc ataatcaatg tagagatgac taatatcctg
    12601 aaactgactg aactaattga gtcaaactcg gcaaggattc gatactattc ctgtgtaact
    12661 ttcttaagga acgagaatga aacaggaagt ggaaaagtgg cgaccttttg gacatccgga
    12721 tggtgatatt cgtgatttat catttcttga tgctcatcag gctgtctacg ttcagcatca
    12781 tgagggcaaa gagcctttag agtatcgctt ttgggttacc tactctcttc actgcttcac
    12841 aaaagattat gaacatcaga cgaacgaaga aaaacaatcg ttaatgtacc acgcgcctaa
    12901 agaatctcgt cccttctgcc agcaccgtta taacttagcg cgcacacact taaaaagaac
    12961 tattttggcg ctgccagaaa gcaacgttat tcatgccggg tatggtagct atgccgtgat
    13021 tgaggtggac ttagacggag gagataaggc attttacttt gttgcgttca gggctttcag
    13081 ggaaaagaaa aaactccgtt tgcatgtaac tagcgcttat cccatttctg aaaaacagaa
    13141 aggtaaatca gtgaaatttt tcaccattgc ctacaactta ttgagaaata agcagcttcc
    13201 tcagccctca aaataacaaa acccacctta aggtgggttt cgccagagaa ttatctctgg
    13261 tattcagaac gccattaccg gactttgcct tgaccttgcg ataatcgcag gttgcgggat
    13321 gtctgaattt cttcagtctg ctgcatcctg gaagatgaga acatgtgttc ttattttcgt
    13381 ctctatcata gttgagtatt tactctctta caatcagatc tctttcattg ctcaacaggc
    13441 gatggcttca gactttgcat tacggaattt ttaagaaagg cagggcgaaa cgaggaagaa
    13501 gcttttcgcc ctggacaaca ttcctgctga cggcactacc ataaaaaaac acaacgcttt
    13561 caacaacctt gcgtttttca tcttccgtag cggctcggaa taaatttacg ttcttacatt
    13621 ccgtctcata gtctttgcga ggcccgtccc agatagctgt cccagtcttt tcataccggc
    13681 tgcaaaccct gagcggttaa cgcggcagca accgcttccg gtctgcgatc gtcgtgcggt
    13741 gagaactgtt ccaactcggg gtgattatcg gcatagccac ctggctgcgt tttcgagaag
    13801 gcgctgacgt tattgatcgc cagcggaata acgcgatcgc gaaaccacgg tgattcccgc
    13861 gtggagagtg acagttcaat ctccggtgca agcagtcgga aggcgcagat ggtttgcact
    13921 aactggcgtt catccataat cgacgcaggc tcaatgccgc cagtacacgg gcgcaggcgc
    13981 ggaaaggaga cagagtaacg gctttgccag taatgctgtt gcagccatag caaatgttcg
    14041 gcaaccatat agcagtcaac gcgccagttg tcggaaaggc caattagcgc gccgaggcct
    14101 atcttatcaa tccccgcacg ccccagccga tccggcgttt ccagccgcca gaagaagtcc
    14161 tgttttttgc ctttcagatg atggcgggca taagtcgcct cgtgatatgt ctcctgataa
    14221 accatcacgc catccagacc aagctgcttt aactcggcgt attccgtctt cgccagcggt
    14281 tgcacttcca tttgtagtga agagaactgt tcacgcaggg cggggagatg acgacgaaag
    14341 taatccatcc ccactttcgc ctgatgttca ccagtgacta atagcagatg ttcaaagccc
    14401 atctcccgta tagcggcgct ttccctggca atatccgctt catccagcgt tttgcgcttg
    14461 atgcgattac tcatggaaaa tccgcagtac gtgcagtcgt tagcgcaaag attggaaaga
    14521 taaagcggga cgtagaaact aactgtgttg ccaaatcgct gacgggtcag acgctgcgcc
    14581 cgttgggcca gttgttccag atagccactg gcggctggcg ataacagcgc catcatatcg
    14641 tcgcgggtga attgcgaggc atttagcgcc cgctctacgt caacagccgt tttgccgttg
    14701 atacgcaggc ggatgtcatc ccagtccagt tgtcgccagc gatcgctgaa ggttttcatg
    14761 ccgatgcctc cagaaatcca gtcagcgggc tggtggcatg agcaaaatga ctgcggctgc
    14821 ccggtccgga ctgacgtgcc agcaggcctg cttctaccgc cagacgaaat gccttcgcca
    14881 tgttgacggg atcgtccgct acggcaatcg ccgtattcac taacaccgcg tcggccccca
    14941 tttccagggc ctgcgctgca tggctgggaa cgccgatgcc agcatcgaca accaccggaa
    15001 ctgtggcctg ctggataata atctccagca tggcacgggt ttccagtccc tgattcgagc
    15061 caatcggcgc gccgagcggc atcaccgctg cacagccgac ttcttccaga cgtttacaca
    15121 ataccggatc ggccccgcag taaggcagca cgacaaatcc ctgttgtacc agcatttcgg
    15181 cggctttcag agtttcgatg ggatcgggca acagccagcg ggcgtcaggg ggaatctcta
    15241 attttaacca gtttgtgcct aacgcttcac gtgccagatg ggcggcgaaa atggcttctt
    15301 ccgctgtttt cgccccggaa gtatttggca gcagggtcac acccgccgcg ataagcggtt
    15361 cgaggatagc gtcgttgtgc tggcgcaagt cgacacgttt catcgccagt gtcaccagct
    15421 ggctgccgga agcgcggatc gcctccacca tcagttgtga agaagcgaat ttccctgtgc
    15481 cggtaaacag atgtgaatca aacgttttgt ccgcaatacg taacatctca accccctgca
    15541 ataacctgaa aaagcaggat ctggtcgcca tcctgcagga tatgttgcgt ccactgctca
    15601 cgcgggacga tttgctgatt aatcgccaga gccgcgcccg cttgtcgttg gtcgagttgc
    15661 tccagtagtt cgtgaacagt ttgcccggtg gcgcactgca tcggttgatc gttaaacagg
    15721 atctgcattg cttcctccgc ataccgggca accactggcg cggcgcaacg ccaggctgcg
    15781 ccactggctc gatttaccgt cgaacagtcg gagttctccc gcaggtgtct ctataccgct
    15841 taataactta atggcttcca gtgcctgcaa agtgcccata accccgacca ccgggccaac
    15901 cacgcccgcc gtgcggcagt tgcgttctgg ctcctggtta tctggccaca ggcagcggta
    15961 acacccctgc tcccagggcg gcgtcagtac catcaactga ccgccaaatc cgaccgcgct
    16021 ggcggtgata agcggcgtgt tgagtaccac gcaggcggca ttaatctcct ggcgagtcgc
    16081 catattgtcg gtacagtcga gcaccacatc ggcccgtgca accgcatctt ttaacgcctc
    16141 acccgttaac cgttgttgta atgctgtcag ttgaatgtcg ggattcaact gtgtcagtcg
    16201 ctgttggctg acctgcgatt tcgggctgtt gatatcttca gtggtaaaga gaatttgtcg
    16261 ttacagattg cttaaatgca catcgtcgtc atctgccagt accagcgtcc cgacgccagc
    16321 gcccgccagg tatagcgcag caggtgtacc cagcccgcca agaccgataa tcagcacctg
    16381 gctgtcgagc agtttttgct gcccgtcaag agcgatatca tcgagcagga tttggcggct
    16441 ataacgcata aaatcacggt cattcatcgc caactcctgc aatttccagc aactgtgccg
    16501 ttgccaaacg ccagtctgcg gcttgagtaa tggcgctgat gacggcgata ctgccgacac
    16561 ccgttgctat caccgcaggc gcgcgtgcca gactgatacc gccaatcgcc acggtgggat
    16621 aatccgccag tcgctcaaca tgccgtgcca gctgttccag cccctgcggt gcagaaggca
    16681 tctgtttggt ttgcgtcggg aacacatgtc ccagcgcgat ataagagggg cgtgctgcca
    16741 gcgcgacgtc gatttccata tcgtcatgtg tcgaaacacc cagccgcagg cctgccgcgc
    16801 ggatggcatt gagatcggtg gcttgcaaat cttcctgccc caaatggacg ccatacgcct
    16861 gatgcttgat cgcgagccgc cagtaatcgt tgataaacaa tcgcgcgtta tagcggcggc
    16921 ccagcgcaat tgccgccacg acatcggctt ccacctcttc atcgcgccga tctttgatgc
    16981 gtagctggag agtacgtacg cctgcatcca acagacgttc gatccactgt acgctgtcca
    17041 ccactgggta cagtcctaaa cgaaaaggta caggaggaaa atcaggctga tacatcacgc
    17101 ttcctcctta cgcaggtaga tttctccgcc tctggcacgg aagttctccg acatatccgc
    17161 cattcccatt tcaatagttt gcgtggcggc gtaatcacgc acttcctggc tgattttcat
    17221 cgagcagaat ttcggcccac acatggagca aaaatgggcg actttacctg actcttgcgg
    17281 cagggtttca tcgtgataag cgcgggcggt aaacgggtcg agggccagat taaactggtc
    17341 ttcccagcga aattcgaagc gggctttcga catggcgtta tcgcgaattt gcgcgcccgg
    17401 atgccctttc gccaggtcag cggcgtgggc ggcaatctta taggtgataa gcccctgctt
    17461 aacatcttct ttattaggca gacccagatg ctcttttggt gttacgtaac agagcatcgc
    17521 gcagccaaac cagccaatca tcgccgcacc aatccccgac gtgaagtggt catagcccgg
    17581 cgcaatatcg gtagttagcg gccccagagt gtaaaacggc gcttcgtggc agtgctctaa
    17641 ctcctcggtc atattgcggc ggatcatctg catcggcacg tggcctgggc cttcaatcat
    17701 cacctgcacg tcatattccc aggcaatttt ggtcagttcg cccagcgtat gcagctcggc
    17761 aaactgcgct tcatcgttgg cgtcctgaat agaaccgggg cgcagaccgt cgcccagcga
    17821 cagcgaaacg tcataagcgg cacagatttc acaaatttcg cggaagtgtt gatagaggaa
    17881 attttcctga tgatgggaga ggcaccattt cgccataatc gaaccgccgc gagagacgat
    17941 accggtcagg cgtttcgcgg tcatcggcac atagcgcaac agtacgcccg catggatagt
    18001 gaagtaatcc acaccttgct cggcctgttc cagcagcgtg tcgcggaacg cttcccaggt
    18061 aagatcttcg gcgatcccgt taaccttctc cagcgcctgg tagatcggca ctgtaccgat
    18121 cggcaccgga ctgttacgca aaatccactc gcgggtttcg tgaatatagc gaccggtgga
    18181 gagatccatc accgtatccg ctccccagcg cgtggaccat accagctttt ccacttcttc
    18241 ttcgatggaa gaggtgaccg ccgagttgcc gatattggcg ttaactttta ccaggaagtt
    18301 acggccaata atcatcggct ccgattccgg atgattaatg ttggccggga taatcgcacg
    18361 tccggcagca acttcatcac ggacaaattc cgcagtgata ttttccggca gacgtgcgcc
    18421 aaagctcatt cccggatgct ggtggcgtaa aacttcgcta cgtatgcgct cgcggcccat
    18481 attctcgcgg atggcgatga attccatttc cggagtgatg atgccctggc gggcgtagtg
    18541 cagttgggtg acacggcgtc ctgctttggc gcgttttggt gttagtacgc cgctaaaacg
    18601 cagttcgtcg aggccatcat ctgccagccg cgctttagtg taatcggaac tgcgcacggt
    18661 aagttcttcg gtatcgccgc gcgcatcgat ccacggctgg cgtagttttg ccagcccttg
    18721 ctgcacgtta atggcgatct gcggatcgcc atatgggccg gaggtgtcgt agaccggaat
    18781 cgcttcgttt tcttcaaact gcggctgttc tttgctgccg ccgattagcg tcgggctaag
    18841 ctggatctca cgcatcggca cgcgaacgcc agagtgtgtg ccagtgaggt aaatgcgttt
    18901 tgagttggga aaggcggtgc cttccagggt gtcgataaaa tgttgggccc gggcgcgttg
    18961 ttcgcggcgg gtcagttttg ttgcagacat agctcattcc aaaaagttaa ggacgtggct
    19021 tgtcagacga cggatgaagc aagagacgat cgccgcaaag gcgatgcgat agcagattaa
    19081 ctcttgttcc cttcgcaggt attagcctga tcaggttccg cggatcccga ataaacggtc
    19141 tcagccagtt aaggcactcc gacaagaaat tagcccccac aaacggggcg ttgaatgtaa
    19201 attacgcgtt aacagcgcag aactcaagca ggatgtttga cgcgggcggc gtcaagcacc
    19261 agcagaatca gcttatcttc cagcacaaag cgcgcttcca gcgcctcgcc gatgtcagat
    19321 aaaacctttt gaaactcaag gtaattatca tgatcgatgg cggtttccag gctggaatcg
    19381 tagtaatcca taatctgttg ggtattggct tcgagttgcg gccaaatctt cgcggcgcgc
    19441 gcgagttgcc cgttgccttc cagcttatga agaatgcgct cataaatact gaaatgtccg
    19501 gcagacaagt aatcgaccag gctctgacaa aaatcatcaa gggctttttc gtttagcctc
    19561 atgtacgatt ctttgccagg cttaatgcca accagattgt agtaagccac gagcagatgc
    19621 ttacgtacat gtagccagcg atcaaccagt ttgttacttc ctctgacgcg ctccgtcagg
    19681 ttatcgagct ggttaagcat gattgactcc gcaagtttgt attcaaaaac tgctcagtga
    19741 gaaatgtaaa aaccatgtta aacatgccag tgatgcaaag gtagtgcaag agctatggat
    19801 cgtataattg aaaaattaga tcacggctgg tgggtcgtca gccatgaaca aaaattatgg
    19861 ttgccgaagg gagaattgcc atatggcgaa gcggcaaatt tcgatcttgt gggtcagcgc
    19921 gcactacaaa tcggcgaatg gcagggggaa cctgtttggt tagtacaaca gcagcggcgt
    19981 cacgatatgg ggtcggtacg tcaggtcatt gatctcgatg ttgtgctgtt tcaactggcc
    20041 ggacgaggcg tacaactggc ggagttttac cgatcgcata aatactgtgg ttactgcggg
    20101 catgaaatgt atccgagcaa aaccgaatgg gcgatgctgt gcagccattg ccgtgagcgt
    20161 tactacccgc aaatcgcccc ctgcattatt gttgccatcc gtcgcgatga ttcgatcctc
    20221 ctcgcccagc atacccgcca tcgtaacggt gtccatacag tacttgccgg attcgtcgaa
    20281 gtgggcgaaa ccctcgagca ggcagtcgcg cgggaagtga tggaagagag cggaattaaa
    20341 gttaaaaact tgcgttacgt gacttctcag ccgtggccgt ttcctcagtc tttaatgacc
    20401 gcgtttatgg cggaatatga cagcggcgac atcgtgatcg acccgaaaga attgctcgag
    20461 gcgaactggt atcgctatga cgatttgccg ttactcccgc cgcccggcac cgtagcgcgc
    20521 cgtctgatag aagatactgt ggcgatgtgt cgggcagagt atgagtgatg atacactgac
    20581 cgcctgacgc actaaggaac agccaaaatg accgaactta aaaacgatcg ttatctgcgg
    20641 gcgctgctgc gccagcccgt tgatgtcact ccagtatgga tgatgcgcca ggcgggtcgc
    20701 tatctaccgg aatataaagt cacgcgcgcc caggcgggcg attttatgtc gctgtgcaaa
    20761 aacgccgagc tggcgtgcga agtgactttg caaccgctgc gtcgctaccc gctggatgcg
    20821 gcgatcctct tttccgatat cctcaccgtg ccggacgcga tggggttagg gctctatttt
    20881 gaagccggag aaggtccgcg ttttacctcg ccagtcacct gcaaagccga cgtcgataag
    20941 ctgccaattc cggacccgga agatgagctg ggttacgtga tgaacgcggt gcgtaccatt
    21001 cgtcgcgaac tgaaaggcga agtgccgctg attggttttt ccggcagccc gtggacgctg
    21061 gcaacctaca tggtggaagg cggcagcagc aaagccttca ccgtgatcaa aaaaatgatg
    21121 tatgccgatc cgcaggcgct gcacgctcta ctcgataaac tggcgaaaag cgtcactttg
    21181 tatctgaatg cgcagattaa agccggtgct caggcagtga tgattttcga cacctggggc
    21241 ggtgtgctta ccgggcgcga ttatcaacag ttctcgctct attacatgca taaaattgtt
    21301 gatggtttac tgcgtgaaaa cgacggtcgc cgcgtaccgg tcacgctgtt taccaaaggc
    21361 ggcggacagt ggctggaagc gatggcagaa accggttgcg atgcgttggg cctcgactgg
    21421 acaacggata tcgccgatgc gcgccgccgt gtgggcaata aagtcgcgtt gcagggtaat
    21481 atggatccgt cgatgctgta cgcgccgcct gcccgcattg aagaagaagt agcgactata
    21541 cttgcaggtt tcggtcacgg cgaaggtcat gtctttaacc ttggtcacgg cattcatcag
    21601 gatgtgccgc cagaacatgc tggcgtgttc gtggaggcag tgcatcgact gtctgaacaa
    21661 tatcaccgct aaggagtgat tatggatctc gcgtcattac gcgctcaaca aatcgaactg
    21721 gcttcttctg tgatccgcga ggatcgactc gataaagatc caccggatct gatcgccgga
    21781 gccgatgtcg ggtttgagca gggcggagaa gtgacgcgag cggcgatggt gctgctgaaa
    21841 tatccctcgc ttgagctggt ggagtataaa gttgcccgca tcgccaccac catgccttac
    21901 attccaggtt ttctttcctt ccgcgaatat cctgcgctgc tggcagcgtg ggagatgctg
    21961 tcgcaaaagc cggatttagt gtttgtcgat ggtcatggga tctcgcatcc tcgccgtctt
    22021 ggcgtcgcca gccattttgg tttgatggtg gatgtgccaa cgatcggcgt ggcgaaaaaa
    22081 cggctctgcg gtaaattcga accgctctcc agcgaaccgg gcgcgctggc cccactgatg
    22141 gataaaggcg agcagctggc ctgggtctgg cgcagcaaag cgcgctgtaa cccgttgttt
    22201 atcgctaccg gccatcgggt cagcgtggac agcgcgctgg cgtgggtaca acgctgcatg
    22261 aaaggctatc gtctgccgga gccaacgcgc tgggcggacg cggtggcctc ggaacgtccg
    22321 gcgttcgtgc gctatacagc aaatcagccc taattcaggt aaactgcgga taatttccgt
    22381 atttgagaac ttaacatgtt acaaaaccca attcatctgc gtctggagcg cctggaaagc
    22441 tggcagcatg tcactttcat ggcttgctta tgcgaacgca tgtaccccaa ttacgccatg
    22501 ttctgccagc aaaccggttt tggtgatggg caaatttacc gtcgtattct cgatctcatc
    22561 tgggaaacgc tgaccgttaa agacgcaaaa gtaaatttcg acagccaact ggagaaattt
    22621 gaagaagcga ttccttcagc cgacgatttc gatctgtacg gcgtttatcc ggcaatcgat
    22681 gcctgcgtgg tgttaagtga actggtccat tcgcgtttga gtggtgaaac gctcgaacac
    22741 gcggtggaag tgagtaagac ctccatcacg accgttgcga tgctggaaat gactcaggtt
    22801 ggtcgcgaaa tgagcgatga agagcttaaa gaaaacccag ctgtagagca agaatgggac
    22861 attcagtggg aaatattccg acttttagct gagtgcgaag aacgcgatat cgagctgata
    22921 aaaggcctta gggcagacct gcgtgaggcg ggtgagagca atattggtat aatttttcag
    22981 caataagacc agaaaacgtg atttaacgcc tgatttgtcg tacttggagt cttccctttc
    23041 gccccccgtc tggtctacat ttggggggcg aaaaaaagtg gctatcggtg cgtgtatgca
    23101 ggagagtgct attctggcat ttccgtcgca ctcgatgctt agcaagcgat aaacacattg
    23161 taaggataac ttatgaacaa gactcaactg attgatgtaa ttgcagagaa agcagaactg
    23221 tccaaaaccc aggctaaagc tgctctggag tccactctgg ctgcaattac tgagtctctg
    23281 aaagaaggcg atgctgtaca actggttggt ttcggtacct tcaaagtgaa ccaccgcgct
    23341 gagcgtactg gccgcaaccc gcagaccggt aaagaaatca aaattgccgc agctaacgta
    23401 ccggcatttg tttctggcaa ggcactgaaa gacgcagtta agtaagattg cgtggcagtg
    23461 aacagtttta acgaaggggt ggtttcaccc cttttgtctt tctggcgtcg atcattgatg
    23521 ctggctggcg ctctgcttct cactgcctgt agtcataact cttcacttcc tccctttacc
    23581 gccagtggat ttgctgaaga ccagggcgcg gtacgcatct ggcgaaaaga cagcggcgat
    23641 aatgtgcatc tgcttgccgt gtttagcccg tggcgcagtg gcgataccac gacgcgagag
    23701 tatcgctggc agggcgataa cctcacgctc atcaatatca atgtttacag caaaccgccg
    23761 gtgaatattc gcgcgcgttt tgacgatcgc ggtgatctga gctttatgca acgtgaatcc
    23821 gatggggaaa agcagcagct ttctaacgac caaatcgatt tataccgtta tcgtgctgat
    23881 cagatccgcc agattagcga tgccttacgt caggggagag tcgtgctgcg ccaggggcgc
    23941 tggcatgcga tggaacagac cgtgaccacc tgcgaagggc aaaccattaa acctgattta
    24001 gattcgcagg cgatagcgca tatcgagcgc cgccagagcc gctcttctgt tgatgtcagc
    24061 gtggcatggc tggaagcgcc cgaaggttcg caattactgt tagtggcaaa ctctgatttc
    24121 tgtcgctggc aacccaacga gaaaacgttc tgatttacca gtggcccata cccatatgac
    24181 cgccaccacc gcagccgccg tagcccatgc ccattccggc tccgcgcgga atacccgctt
    24241 cagccatcgc gatatctcgt ttcacccgta actcatctaa cgactgacgc aaattctcca
    24301 tctctttggc gaccgcgtta attttgctgc tatccggtgg gttcgcggct aacagggcat
    24361 tgtattcata acgcttcgtc accagttgct gttgcagtgc gctgctttga gcgtaaaagt
    24421 cattatggat tttctgccac gctgtctgtt gttcgctggt caaaggcgcg gcattttgct
    24481 gccacatacc gtgtccgccg tgagcaaatg cagatgtcga tcccatcgcc attgctgaaa
    24541 gcgccatcat taccagggca attttcgtgt tccgtttcat ggttaatcct ccagtggttg
    24601 tcttacttcg ggtattgcat cttccgtgcc aacgatgaaa cgctgatatg acgggtaatc
    24661 tggcatgata aacgagtaaa aatgactcgc ctgctgcggg tagcgagtca tttttactca
    24721 ttgaaactta agcctttgtg ttacagcgca gggtaagcgc tgataaaaga tggcatgatt
    24781 tctgctgtca gaaagggatg agcaggcaaa gaagaagatg cgttttatgc aacgttctaa
    24841 agactcctta gctaaatggt taagcgcgat cctccccgtg gtcattgttg ggctggtagg
    24901 gttgtttgcg gtgacggtga ttcgcgatta tgggcgcgag actgccgccg ccagacaaac
    24961 gctgctggaa aaaggcagtg tacttattcg cgctcttgaa tccggctcgc gcgtcggcat
    25021 ggggatgcgc atgcatcatg cgcagcagca ggccttactg gaagaaatgg ccgggcagcc
    25081 tggagtacgt tggtttgcgg tcacggatga acaaggaaca atcgtgatgc atagcaactc
    25141 cggcatggtg ggaaaacagc tttattcccc gcaggaaatg cagcagttac atccgggaga
    25201 tgaagaagcg tggcggcgga tcgatagcgc agacggtgag cctgttctgg aaatttatcg
    25261 ccagtttcaa ccgatgtttg ctgctggaat gcaccggatg cgccatatgc agcagtatgc
    25321 cgcgacacca caagcaattt tcatcgcttt cgacgccagt aatattgtga gtgccgaaga
    25381 tcgtgagcag agaaacaccc tgattatcct cttcgccctg gcgacggtct tgctggcaag
    25441 cgtattgtca ttcttctggt atcgccgcta tctgcgctcg cgccagcttc tacaagatga
    25501 aatgaagcgc aaagagaagc tggtggcact ggggcatctg gcggcaggcg ttgcccacga
    25561 aatccgtaat ccactttcct caattaaagg gctggcgaaa tactttgccg aacgcgcgcc
    25621 agcaggggga gaagcgcatc aactggcgca ggtgatggcg aaagaagccg accgtttaaa
    25681 ccgcgtggta agcgagttgc tggaactggt taagccaacg catctggctt tgcaggcggt
    25741 ggatctcaac acgctgatta accactcatt acagctggta agccaggatg caaacagccg
    25801 ggagatccag ttacgcttta ccgccaacga cacattaccg gaaattcagg ccgatccgga
    25861 caggctgact caggtcctgt tgaatctcta tctcaatgct attcaggcga ttgttcagca
    25921 tggcgtgatt agcgtgacgg tcagcgaaag cggcgcgggc gtgaaaatca gcgttaccga
    25981 cagcggtaag ggaattgcgg cagatcagct tgaagccatc ttcactccgt acttcaccac
    26041 caaagccgaa ggcaccggat tggggctggc ggtcgtgcat aatattgttg aacaacacgg
    26101 tggtacaatt caggtcgcaa gccaggaggg aaaaggctca acgttcaccc tctggcttcc
    26161 ggtcaatatt acgcgtaagg acccacaagg atgacgcacg ataatatcga tattctggtg
    26221 gtggatgatg acattagcca ctgcactatt ttgcaggctt tactgcgcgg ctggggctat
    26281 aacgtcgcgc tggcgaacag cgggcgacag gcgctggagc aggtgcggga acaggttttt
    26341 gatcttgtgc tttgcgatgt gcgaatggcg gagatggacg gcatcgccac gctgaaagag
    26401 atcaaagcgt taaacccggc aattccggtg ctgattatga ctgcgtactc cagcgtcgag
    26461 acggcggtag aggcactgaa aactggggcg ctggattatc tcatcaagcc gctggatttc
    26521 gataacctac aggcgacgct ggaaaaggcg ctcgcgcata cgcacagtat tgatgctgaa
    26581 acacctgcgg tgactgccag ccagttcggt atggtcggta aaagcccggc gatgcaacac
    26641 ctgctcagtg aaatcgccct cgtcgcgcca tcggaagcca cagtgctgat ccacggcgat
    26701 tccggcaccg gtaaagagct ggtcgccagg gcgattcacg ccagtagcgc acgtagcgaa
    26761 aaaccgctgg taacgctcaa ctgtgcggca ctcaacgaat ccttgctgga atctgaattg
    26821 ttcggtcacg aaaaaggggc gtttactgga gccgataaac gccgggaagg gcgctttgtt
    26881 gaggcggacg gcggcacgct gtttctcgat gaaattggcg atatctcgcc gatgatgcag
    26941 gtgcgtctgc tgcgtgcgat tcaggagcgc gaagttcagc gtgtcggtag caaccagact
    27001 atctcggttg atgtccggct gattgcggcg acccatcgcg atcttgccgc agaggtgaat
    27061 gccgggcgtt ttcgccagga tctctactat cgcctgaatg tggtggcgat tgaagtacca
    27121 tcgctgcggc aacggcggga agatatccct ctgctggctg gccattttct gcagcgcttt
    27181 gccgggcgta atcgcaaggc ggtaaaaggt tttacgcccc aggcgatgga tctgttgatt
    27241 cattacgact ggccgggaaa tattcgtgag ctggaaaacg cggtggaacg ggcagtggtg
    27301 ctgctgccgg ggaatatatt tccgaacgcg agctgccgct ggcgattgcc agtacgccga
    27361 tcccgctggg gcaaagtcag gatattcagc cgctggtgga agtggaaaaa gaggtgattc
    27421 tggcggcact ggagaaaacg ggcggcaaca aaactgaagc cgcccgtcag ttagggatca
    27481 cgcgtaaaac gttattggca aaactgtcgc gttagttctg ctcgcgttcg atagcacgcc
    27541 agccgatatc tttccggcag aagcagtcgt cccagtggat atcggtcatt aaggcatagg
    27601 cgcgtttctg cgcttctgcc acggtatgac ccagcgcggt gacgcacagt acgcgcccgc
    27661 cgttggtcac tacctgctcg tcatccgcca gttttgtgcc cgcgtggaac actttgccgc
    27721 ctgccacttc ttccagcagc aggccgtgga tcacgtcacc ggtgcggtaa tcacccggat
    27781 atccacccgc agccatcacc acgccgagag aagcgcgttc atcccactcg gacgttttct
    27841 cgtccagttt gctttcacag gccgccaggc agagctcaac cagatcggac ttcatgcgca
    27901 gcataatcgg ctgggtttcc ggatcgccaa agcggcagtt aaattcaata accttcggat
    27961 tgccctgttt gtcgatcatc aggcccgcgt agagaaaacc ggtgtaggtg ttgccttccg
    28021 ccgccatgcc tttcacggtt ggccagataa tacgttccat ggtgcgctga tgaacgtcat
    28081 cggttactac cggcgcgggg gagtaagcgc ccatcccgcc ggtgtttggt ccggtatctt
    28141 tatcgcctac gcgtttgtga tcctggctgg tagccatcgg cagcacatgc tcgccgtcca
    28201 ccatcacgat aaagctcgct tcttcgccat cgaggaactc ttcgataacg atgcgatgac
    28261 ccgcgtcgcc aaaagcgttg cccgccagca tatcgtgaac agccgcttcc gcttcttcca
    28321 gcgtcatcgc cacgataacg cctttcccgg cagccagacc gtccgcttta atgacgattg
    28381 gcgcgccttt ctcacgcaga tacgccagcg caggttctac ctcggtgaag ttctggtatt
    28441 ccgccgtagg gatcttatgg cgggccagga aatctttggt aaacgctttt gagccttcca
    28501 gttgggccgc acctgcggtt gggccgaaga ttttcagccc ggcggcgcgg aaggtatcga
    28561 ccacgccttt caccagcggc gcttccgggc cgacgatggt cagatcaatc ttttcgtttt
    28621 gtgcgaaatc caacagcgcc gggatatcgg tcacgccaat agcaacgttt tgcagcgcgg
    28681 gttccagcgc agtgcctgca ttacccggag caacaaaaac agtctcaacc agcggcgact
    28741 gggccgcttt ccaggccagc gcgtgctcgc gcccgccgtt accaatcact aatactttca
    28801 tctattgctc cattaatggc ggaagtggcg catgtcggtg aagagcatcg caataccgtg
    28861 ctcgtcggcg gcggcaatca cttcgtcatc acggatggaa ccgccaggct ggattacgca
    28921 ggtcacgccc gcagcggcgg cggcatcaat accgtcgcgg aacgggaaga acgcgtcaga
    28981 agccatcgag gaacctttca cttccaggcc ttcatcggca gctttaatac cggcgatttt
    29041 cgcggagtac acgcggctca tctggcccgc gccaataccg atggtcatat tgtttttggc
    29101 atagacgata gcattggatt tcacgaactt cgccactttc cagcagaaca gcgcatcgcg
    29161 cagttcctgt tcggtcggct gacgttgggt gacgacgcgc agttcttccg caccgaccat
    29221 ccccaggtca cgatcctgaa ccagcagacc gccgttcacg cgtttgaaat caagacccgg
    29281 aacacgctcg ccccactgac cgcaggtcag aacgcgtacg ttctgcttgg cggcggtgat
    29341 tttcagggct tcttcgctgg cggaaggcgc aataatcact tcgacaaact gacgagaaat
    29401 gatggcctgt gcggtttccg catctagctc gcggttaaag gcaatgatgc cgccgaatgc
    29461 ggaggttggg tcggttttgt acgcgcgatc gtaagcatca agaatggaat tgccgatagc
    29521 tacaccgcaa gggttggcgt gcttcacaat cacacatgcc ggctcggcga actctttcac
    29581 gcactccagc gccgcatcgg tatcggcgat gttgttataa gagagggctt taccctgaac
    29641 ctgggttgcg gtagcaacgg aggcttcttt cacattctct tctatataga aggcagcctg
    29701 ctggtggctg ttctcgccgt aacgcatatc ctgcttctta atgaagttca ggttcagcgt
    29761 gcgtgggaag cgaccggcgg cttctttgct ttcaccgtgg tacgccggaa ccatgctgcc
    29821 gaagtagttg gcaatcatgc tgtcgtaggc ggcagtgtgt tcgaaggctt tgatggcgag
    29881 gtcgaaacgg gttgcaagcg tcagcgatcc ttcgttgtca tccatctctt taataatggc
    29941 gtcgtagtcg ctgctcttca ccacgattgc gacatcttta tggttcttag cggcggagcg
    30001 caccatggtc gggccgccga tatcgatgtt ctcaaccgca tcttccagcg agcagccttc
    30061 acgagcaaca gtctgggcga acggatacag gttaacaacc accatatcga taggctggat
    30121 ctgatgttct tccataatgg catcgtcctg gccgcgacgg cccagaatgc caccatgtac
    30181 tttcggatgc agggtcttca cgcgtccatc catcatctcc gggaaaccgg tgtaatcgga
    30241 aacttcggtt accggcagac ctttttctgc taacagacgg gcagtgcccc ctgtagacag
    30301 cagctccaca ccgcgtgcgg aaagtgcctg ggcgaattcg acgataccgg ctttgtcaga
    30361 aacactgagc agagcgcggc ggactggacg acgttgttgc atggtaaatc ccctggattt
    30421 gactattaca gagagcgtta gctgaatttt tcgcgaaaaa ctcagctaac gcccctaacg
    30481 gggcatcctt atttttcgcc cgcattgtaa cgaaaacgtt tgcgcaacgc tcgcgaattt
    30541 ttctctttca atggtgatca caattttgac agtggctacc gtgggaaaaa tacagaaatt
    30601 acattgatga ttgtggataa ctctgtgcgt aaaaaggtat aaagcggggt tttgctgggg
    30661 aatgcagcag tcagtcattt ttctgcaatt tttctattgc ggcctgcgga gaactcccta
    30721 taatgcacct ccatcgacac ggcggatgtg aatcacttca cacaaacagc cggttcggtt
    30781 gaagagaaaa accctgaaat tcagggttga ctctgaaaga ggaaagcgta atatacgcca
    30841 cactcacgac agtgcgctaa agctcgtcgc
//
LOCUS       DAJVUP010000030        30338 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.030, whole genome shotgun sequence.
ACCESSION   DAJVUP010000030 DAJVUP010000000
VERSION     DAJVUP010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30338
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.030"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..712)
                     /locus_tag="OQQ75_001276"
                     /pseudo
     CDS             complement(1..712)
                     /locus_tag="OQQ75_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310631.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
     gene            complement(687..1487)
                     /gene="otsB"
                     /locus_tag="OQQ75_001277"
                     /pseudo
     CDS             complement(687..1487)
                     /gene="otsB"
                     /locus_tag="OQQ75_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416411.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
     gene            complement(1654..2640)
                     /gene="araH"
                     /locus_tag="OQQ75_001278"
     CDS             complement(1654..2640)
                     /gene="araH"
                     /locus_tag="OQQ75_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter permease AraH"
                     /protein_id="HCS1975672.1"
                     /translation="MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPN
                     FATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESL
                     WIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDE
                     SFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVV
                     RTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKI
                     SYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV"
     gene            complement(2655..4169)
                     /gene="araG"
                     /locus_tag="OQQ75_001279"
     CDS             complement(2655..4169)
                     /gene="araG"
                     /locus_tag="OQQ75_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter ATP binding protein
                     AraG"
                     /protein_id="HCS1975673.1"
                     /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA
                     GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN
                     IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALAR
                     NAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD
                     GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPIS
                     LAVRSGEIVGLFGLVGAGRSELMKGLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM
                     LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADQHIRSLNIKTPG
                     AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV
                     AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA"
     gene            complement(4239..5227)
                     /gene="araF"
                     /locus_tag="OQQ75_001280"
                     /pseudo
     CDS             complement(4239..5227)
                     /gene="araF"
                     /locus_tag="OQQ75_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416414.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter substrate-binding
                     protein AraF"
     gene            5941..6444
                     /locus_tag="OQQ75_001281"
     CDS             5941..6444
                     /locus_tag="OQQ75_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin-like protein"
                     /protein_id="HCS1975674.1"
                     /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR
                     AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA
                     QLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN
                     VVSHQLH"
     gene            complement(6523..6774)
                     /locus_tag="OQQ75_001282"
     CDS             complement(6523..6774)
                     /locus_tag="OQQ75_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2766 domain-containing protein"
                     /protein_id="HCS1975675.1"
                     /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ
                     LKNIDFSNHPAAADPVTMRAIQKAIALIELKFTPQGESH"
     gene            complement(6889..6975)
                     /gene="azuC"
                     /locus_tag="OQQ75_001283"
     CDS             complement(6889..6975)
                     /gene="azuC"
                     /locus_tag="OQQ75_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein AzuC"
                     /protein_id="HCS1975676.1"
                     /translation="MKLRKILKSMFNNYCKTFKDVPPGNMFR"
     gene            7237..7560
                     /locus_tag="OQQ75_001284"
     CDS             7237..7560
                     /locus_tag="OQQ75_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecR-like lipofamily protein"
                     /protein_id="HCS1975677.1"
                     /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATGIVRLVYDQAFLQ
                     HAHTDRYVSRGIADRACQQEGYTHAIPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA
                     FPVFL"
     gene            7731..8228
                     /gene="ftnA"
                     /locus_tag="OQQ75_001285"
     CDS             7731..8228
                     /gene="ftnA"
                     /locus_tag="OQQ75_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HCS1975678.1"
                     /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR
                     RHAQEEMTHMQHLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN
                     ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST
                     LDTQN"
     gene            complement(8266..8505)
                     /locus_tag="OQQ75_001286"
     CDS             complement(8266..8505)
                     /locus_tag="OQQ75_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecH family protein"
                     /protein_id="HCS1975679.1"
                     /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA
                     EGMTAGELVAFLAAKGKFIPSKDGFSTDQSKICRH"
     gene            8696..9907
                     /gene="tyrP"
                     /locus_tag="OQQ75_001287"
     CDS             8696..9907
                     /gene="tyrP"
                     /locus_tag="OQQ75_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter TyrP"
                     /protein_id="HCS1975680.1"
                     /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW
                     ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA
                     GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM
                     LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVQSIVSYMDGNVRKLRRVF
                     ITGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVH
                     LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV
                     MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF
                     LIAAGLLPEVR"
     gene            complement(9969..10634)
                     /gene="yecA"
                     /locus_tag="OQQ75_001288"
     CDS             complement(9969..10634)
                     /gene="yecA"
                     /locus_tag="OQQ75_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YecA"
                     /protein_id="HCS1975681.1"
                     /translation="MKTGPLNESELEWLDDILTKYNTNHAILDVAELDDLLTAVLSSP
                     QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFG
                     LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS
                     PEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQC
                     CLH"
     gene            complement(10830..10916)
                     /locus_tag="OQQ75_001289"
     tRNA            complement(10830..10916)
                     /locus_tag="OQQ75_001289"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10880..10882),aa:Leu,seq:taa)
     gene            complement(10929..11002)
                     /locus_tag="OQQ75_001290"
     tRNA            complement(10929..11002)
                     /locus_tag="OQQ75_001290"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10968..10970),aa:Cys,seq:gca)
     gene            complement(11057..11132)
                     /locus_tag="OQQ75_001291"
     tRNA            complement(11057..11132)
                     /locus_tag="OQQ75_001291"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11097..11099),aa:Gly,seq:gcc)
     gene            complement(11284..11832)
                     /gene="pgsA"
                     /locus_tag="OQQ75_001292"
     CDS             complement(11284..11832)
                     /gene="pgsA"
                     /locus_tag="OQQ75_001292"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HCS1975682.1"
                     /translation="MQFNIPTLLTLFRVILIPFFVLLFYLPVTWSPFAAALIFCVAAV
                     TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
                     IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
                     AVLTLWSMLQYLSAARADLLDQ"
     gene            complement(11889..13721)
                     /gene="uvrC"
                     /locus_tag="OQQ75_001293"
     CDS             complement(11889..13721)
                     /gene="uvrC"
                     /locus_tag="OQQ75_001293"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310678.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HCS1975683.1"
                     /translation="MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
                     SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
                     PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
                     NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS
                     QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV
                     LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
                     ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV
                     KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY
                     GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET
                     LFFEPEDEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP
                     KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
     gene            complement(13718..14374)
                     /gene="uvrY"
                     /locus_tag="OQQ75_001294"
     CDS             complement(13718..14374)
                     /gene="uvrY"
                     /locus_tag="OQQ75_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HCS1975684.1"
                     /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR
                     TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL
                     SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
                     ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
                     "
     gene            14669..14845
                     /locus_tag="OQQ75_001295"
     CDS             14669..14845
                     /locus_tag="OQQ75_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975685.1"
                     /translation="MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTA
                     NFHCNMTRKINEYA"
     gene            14832..15056
                     /locus_tag="OQQ75_001296"
     CDS             14832..15056
                     /locus_tag="OQQ75_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2594 family protein"
                     /protein_id="HCS1975686.1"
                     /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK
                     MEKQLALIEDETQAAVFSKTVKQIKQAYRQ"
     gene            complement(15123..15871)
                     /gene="sdiA"
                     /locus_tag="OQQ75_001297"
                     /pseudo
     CDS             complement(15123..15871)
                     /gene="sdiA"
                     /locus_tag="OQQ75_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310681.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SdiA"
     gene            complement(16101..16853)
                     /gene="yecC"
                     /locus_tag="OQQ75_001298"
     CDS             complement(16101..16853)
                     /gene="yecC"
                     /locus_tag="OQQ75_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     YecC"
                     /protein_id="HCS1975687.1"
                     /translation="MSAIEVKNLVKKFQGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
                     LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV
                     LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA
                     MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD
                     LGRIVEQGAAKALFADPQQPRTRQFLEKFLLQ"
     gene            complement(16850..17518)
                     /gene="tcyL"
                     /locus_tag="OQQ75_001299"
     CDS             complement(16850..17518)
                     /gene="tcyL"
                     /locus_tag="OQQ75_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter permease"
                     /protein_id="HCS1975688.1"
                     /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR
                     LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPILSAMIGLSLNTAAY
                     AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
                     SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE
                     REPK"
     gene            complement(17533..18519)
                     /gene="dcyD"
                     /locus_tag="OQQ75_001300"
     CDS             complement(17533..18519)
                     /gene="dcyD"
                     /locus_tag="OQQ75_001300"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HCS1975689.1"
                     /translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP
                     MAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP
                     IGTTAENYLTNGNRLLLNLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGG
                     SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV
                     TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA
                     RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV"
     gene            complement(18624..19424)
                     /gene="tcyJ"
                     /locus_tag="OQQ75_001301"
     CDS             complement(18624..19424)
                     /gene="tcyJ"
                     /locus_tag="OQQ75_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1975690.1"
                     /translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL
                     VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID
                     VVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY
                     EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA
                     FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK"
     gene            complement(19512..20063)
                     /gene="fliZ"
                     /locus_tag="OQQ75_001302"
     CDS             complement(19512..20063)
                     /gene="fliZ"
                     /locus_tag="OQQ75_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310687.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliZ"
                     /protein_id="HCS1975691.1"
                     /translation="MMVQHLKRRPLSRYLKDFKHSQAHCAHCRKLLDRITLVRDGKIV
                     NKIEISRLDTLLDENGWQVEQQSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM
                     SPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQ
                     HYQRQTCTGLVQKSSSLPASDIY"
     gene            complement(20109..20828)
                     /gene="fliA"
                     /locus_tag="OQQ75_001303"
     CDS             complement(20109..20828)
                     /gene="fliA"
                     /locus_tag="OQQ75_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HCS1975692.1"
                     /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL
                     LQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ
                     AIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV
                     TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGE
                     SRVSQLHSQAIKRLSTKLGKL"
     gene            complement(21148..22854)
                     /locus_tag="OQQ75_001304"
     CDS             complement(21148..22854)
                     /locus_tag="OQQ75_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
                     /protein_id="HCS1975693.1"
                     /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD
                     AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRILELTVQASTG
                     TNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGQTITIDL
                     KKIDSDTLGLNGFNVNGKGTIANKAATVSDLTAAGATGTGPYAVTTNNTALSASDALS
                     RLKTGDTVTTTGSSAAIYTYDAAKGNFTTQATVADGDVVNFANTLKPAAGTTASGVYT
                     RSTGDVKFDVDANGDVTIGGKAAYLDATGNLSTNNAGIASSAKLSDLFASGSTLATTG
                     SIQLSGTTYNFGAAATSGVTYTKTVSADTVLSTVQSAATANTAVTGATIKYNTGIQSA
                     TASFGGANTNGAGNSNDTYTDADKELTTTASYTINYNVDKDTGTVTVASNGAGATGKF
                     AATVGAQAYVNSTGKLTTETTSAGTATKDPLAALDEAISSIDKFRSSLGAIQNRLDSA
                     VTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL
                     QG"
     gene            23120..24526
                     /gene="fliD"
                     /locus_tag="OQQ75_001305"
     CDS             23120..24526
                     /gene="fliD"
                     /locus_tag="OQQ75_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HCS1975694.1"
                     /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL
                     SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL
                     AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
                     KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV
                     SVAAKNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIK
                     DWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS
                     SSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS
                     NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSL
                     NSTSSYLTQQFENNSNSK"
     gene            24551..24961
                     /gene="fliS"
                     /locus_tag="OQQ75_001306"
     CDS             24551..24961
                     /gene="fliS"
                     /locus_tag="OQQ75_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HCS1975695.1"
                     /translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARL
                     FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR
                     NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV"
     gene            24961..25327
                     /gene="fliT"
                     /locus_tag="OQQ75_001307"
                     /pseudo
     CDS             24961..25327
                     /gene="fliT"
                     /locus_tag="OQQ75_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliT"
     gene            25405..26892
                     /gene="amyA"
                     /locus_tag="OQQ75_001308"
     CDS             25405..26892
                     /gene="amyA"
                     /locus_tag="OQQ75_001308"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1975696.1"
                     /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA
                     YKGASGGYSVGYDSYNLFDLGEFDQKGSIPTKYGDKVQLLAAIDALKRNDIAVLLDVV
                     VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
                     SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
                     WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT
                     YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ
                     PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII
                     EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEYPGCVVVMSNGDDGEKTIHLG
                     ENYGNKTWRDFLGNRQESVITDEHGEATFFCNGGSVSVWVIEEVI"
     gene            complement(26926..27339)
                     /locus_tag="OQQ75_001309"
     CDS             complement(26926..27339)
                     /locus_tag="OQQ75_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310694.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1975697.1"
                     /translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ
                     RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLALMSDDLTNVTVKRELYEVERD
                     GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP"
     gene            27526..28731
                     /gene="yedE"
                     /locus_tag="OQQ75_001310"
     CDS             27526..28731
                     /gene="yedE"
                     /locus_tag="OQQ75_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HCS1975698.1"
                     /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE
                     FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK
                     LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW
                     FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ
                     PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV
                     QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS
                     TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFTALMLIIGWEKRFFRRA
                     APQTAKEIA"
     gene            28728..28961
                     /gene="yedF"
                     /locus_tag="OQQ75_001311"
     CDS             28728..28961
                     /gene="yedF"
                     /locus_tag="OQQ75_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HCS1975699.1"
                     /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
                     QSINNIPLDARNHGYTVRDIQQDGPTIRYLIQK"
     gene            29068..29739
                     /locus_tag="OQQ75_001312"
     CDS             29068..29739
                     /locus_tag="OQQ75_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HCS1975700.1"
                     /translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKV
                     LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG
                     WFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFEHGDEAEGFLIVTAAADQGLVDIH
                     DRRPLVLSPEAAQEWMRQEIGGKEASEIATNGCVPANQFTWHPVSRAVGNVKNQGAEL
                     IQPVC"
     gene            complement(29779..>30338)
                     /locus_tag="OQQ75_001313"
     CDS             complement(29779..>30338)
                     /locus_tag="OQQ75_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1975701.1"
                     /translation="LSRKVKFSNNWQKQKRKIQRLHSCIANIRRDYLHKVTTTVSKNH
                     AMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRG
                     GQVFAVPPACTSQRCACCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAV
                     LACGEMVQSGRPLKQEPTEMIQATA"
BASE COUNT         7514 a         7806 c         7279 g         7739 t
ORIGIN      
        1 agtggcccgg cagcctgttt ggctatttct ttcggttcaa tgccgatcgg gtagacttct
       61 gttcgaaatg ctttgcccca ggctgtatgg ctttttgcgc tacgtgtcgt gacgcgggtc
      121 aggttagaaa gacaatccag gaacgccaga cgatcgtttt ctgtctggaa acccagcaaa
      181 tcataatcac aaagctgttc aagcaaggtg tcatatgtcg gcagcgcgtt gaagatttcc
      241 ggtgtcggga aaggaatatg cagaaagaaa ccaatgcgat tattcacccc acgtttgcgt
      301 aattcatgcg caaagggcaa caggtgataa tcgtggatcc agataatgtc atcgtcttgc
      361 aacagcggca gtaatttatc tgccagcaac gcatttacgc gtagatagcc gtcccaggca
      421 ggacgctgaa attgcatcag atcgagccga taatgaaaag cgggccagag aacggcattg
      481 gagaattggt tgtagtattc gtcaaggtcc tgttcgctga ggttaaaaga ggcccacgta
      541 atgttacctt ttttagcggc tgatcctcat tccctgtttc accactccag ccaaaccaca
      601 gtccgcctgt ggctttcagt gcccccagta tgccaacggc aaggccaccg gcactggcgg
      661 cgtgctcgtc tggtggtgca atccggttag atactacgac taaacgactc atagtcatca
      721 ctcctgttat tttctctttt ttgttgtaat gcggtggtta tcatttcaag cctgctccag
      781 acatccggca cacccgccag tcgccatgat gcctgagttg cacctgtgcc aatttttact
      841 gacattccgc ccagtcggtt aacgactgcg aagccagatt catcggttaa atcatcgccc
      901 agaaatacgg gcgttcgccc gataaaggga gcttcctgca taaaagctgc aattgcctca
      961 cctttactgg tacctctcgg tttgatctcg acaacacact ttccctgctg taacgccatt
     1021 tgtggccaga tctgagtaat acgttacgct aatgtcatta atgcgtcttc atgctgcgga
     1081 gcctgacgat aatgcagcgc aaaagccatc cctttcgcct ccagctccgc gccgggatac
     1141 tgagcgataa ctgtatgcag ttgcacgcta atatcacgcg caatcgcatc cggcagatga
     1201 acgatatgcg ttttaccatt gatgtcacgg cgctccgccc catgcacgcc cgctaacggg
     1261 aagcgataag gttttgccag tgcgtcaagc tccaccattg agcgccctga tatcaatgcc
     1321 aatgcaccat cacttgcggt tgccagtagc tgtagtcctt gcagaatatt gtcaggcacg
     1381 acgacctgat cgggatgcgg tttgatttcc gccagcgttc catcgagatc aaaaaaccag
     1441 gcatatttcg cggatagttc aggggtttcg gttaacggtt ctgtcacccg gttctcctac
     1501 ttctcttttc ttattgtttt gcgcagaacg cgctttacag acatgtaagt atagacagtg
     1561 tgacgggggt cgccatttgc aacgaagaac agccaaccgt tatggcggtt ggctgtggtg
     1621 ggaaaaaacg ctaaattgtt gcagaaaaaa gcatcagaca gtgcgtttcg ctttttgctt
     1681 gtaacggtcg aagatcaccg ctgccagcag gattaagccg cgaaccacgt actgcgcgaa
     1741 aggagaaata ttaagcaggt tcatggcgtt ttccacggtg cctaaaatta agatacccgc
     1801 caccacatat gagatttttc cgatgcctcc tttcagagaa acgccaccta aaacgcaggc
     1861 ggagataaca atcagctcgt aaccaatcga cgtcattggc tgcccactgg tcatacgtga
     1921 agccagaata attccggcta tcgcagatac caggccagag agaacaaaga taataatttt
     1981 ggtgcgaaca accggtacac ccgccagacg cgcagcctct tcgttcccgc caatcgccag
     2041 ggtgttacga ccaaaggtgg ttttattcag caacaaacca aagataatca gacacgcgac
     2101 ggtgagccag attggcgcag gcagaccgaa ccagttagcg taaccaaggg caaagaagct
     2161 ttcatcttcg ataccgaccg ctttaccgtc tgaaatgatg tacgccagac ctcgaacaat
     2221 ctgcatcgtt gccagtgttg tgatcagagc atttattttc agtttggcga taacaaagcc
     2281 attgaccagg ccacagagaa tgccaagcag caaccccgct gccacgccaa tccacaggct
     2341 ttcagtcagg ttgataacca ccgccgtggt gacacccgca caggcaatta cggaggcgac
     2401 agaaaggtca aagtcaccgg aagcaaggca gaacaacatg ccacacgcca ccatccccga
     2461 catggaaatt gccaggccca accctttcat attaatgaag gtggcaaaat ttgggacaaa
     2521 aatggcacag gcgataaaga gcaccgcaaa caccaccagc atgccgtact gatcccagat
     2581 acgcccgaag ctgaatgacg acttaggtgc gccagaaccc gatgtagaaa cagaagacat
     2641 catactctcc ttactcaggc aactgcctgg ctgactttag gcatcgcaag gctcagtgcc
     2701 tgacgctcat ctgcctgctc gtgtaacaat tcaccggcga tttcaccttc ccgcatcacc
     2761 acaatccggt cggcaacgcc gaggacttca ggtaagtcgc tggaggcaaa cagcaccgcc
     2821 acaccctgcg ccgccagcgc ataaattacg ttatatattt cgtgcttagc accaacatca
     2881 atgccgcgcg taggttcatc cagcaaaatg accttcatct cttccgataa ccagcggccc
     2941 agaatggctt tttgctgatt tccgcctgag agattcatga tcagttgctc agcgcccggc
     3001 gttttgatgt tgagcgaacg aatgtgctga tcggcattgt tttcttccca accgttgttg
     3061 attacacaac cgccgagcac atgtttgcgt ctggcactga tgttgatatt gtcgcgaacg
     3121 gagtgcacgg gaataatgcc ttccgctttg cgatcttccg ggcagagcat catgcctgcg
     3181 gcaatggcgt ggctcggttt acgaatatcg atcggctgtt ggtcgatata aacctgaccg
     3241 gcggtgattt gcgtcccgcc aaacaagcct ttcattaatt cgctacgccc cgcccctacc
     3301 agaccaaaca gcccaacaat ttcaccactg cgaaccgcca gacttattgg cgtacgcacg
     3361 cctggtgctt tcacagcatc aagacgcagg cgctcctcgc cataactacg aggttgccag
     3421 ccgtagatat cgccaatgtc gcgcccgacc atcgcctgca ccagcgcgtc gtggtcaacc
     3481 tgctgcatat cggtaaaggt tttgacataa cgtccatctt taaagacagt gatggcatcg
     3541 ctgagggcaa atatttcttc catacggtga gaaacgtata agatcacccg cccctctttt
     3601 cgcagttcac gaataacgcg gaaaagattg tcgatttcgc gggcagaaag ggagctggtt
     3661 ggctcatcaa aggcgataat tttagcgtta cgcgccagcg ccttggcgat ttcaaccatc
     3721 tgccactgac caatggagag atatttcagc ggcgtgtccg ggtcaatatc cataccaaga
     3781 tgtttaagtt gtaaacccgc ctcataattc agcaatgagc gattcacaat gccgccttta
     3841 tgcggcagct ggccgagata gatgttttcc gcgacggtca tttccggcac gagatgcagt
     3901 tcctggtaaa taatcgccac acccgcgtta agtgctgcgg tcgtgtcgga aaaggacatt
     3961 tcctgcccat taatcactac agaacccgtg gttggcgcat agttgccgct gaggattttt
     4021 aagagagttg attttcctgc gccattttca cccatcaacg catgaacctg accggcatag
     4081 cagtcaaaac taatatccgt cagcgcctta acgccgggaa acgttttacc gatgccgcga
     4141 aatgagagat acggggtaga ctgttgcata acgtctccgt gaatcactgg tcgttcacac
     4201 cccctctgca tcatgcagag gggaattttt ccggcaaatt acttaccgcc taaacctttt
     4261 ttctccagtt cttctttaaa gttgtcacgc gtgatcagca ccacgtcggt aacttcggta
     4321 aattttggcg gttcaacgtc ttttgctacc cagttgtaaa gcatttcgct ggatttatag
     4381 ccatgtacgt ccgggcttgg cagcagggaa ccgtagaagc cggttgcctg tactttagac
     4441 agttcgctca ccgcatccac accgttaatg ccaatgccga taatatcggc agctttaaag
     4501 ccctgacctt ccgtcgcgcg tacgccgccc agcacggtgc tgtcgttcat accgacgatc
     4561 agccaatgtt taacttcagg atgttgaacc agcattgagt tggcagcgtc aaatgccccc
     4621 gggatgtcgt tagatttggt aggtacctga taaatttgtt tttccgggaa tccggccgct
     4681 ttcagcgcat ccatagatcc cgtagtacgg cggcgggcag tatccagttc gttggcggta
     4741 atcaccatca ccgcgctttc tttgacatcc cagccacgtt tctgcatctc tttatacagt
     4801 tcctgaccct gacgttcgcc aattttagtc gcgccatcat caccagcgga acggtatcca
     4861 ttggcttacc tttggcgtta acaaactgat catccacggc aatgactttc atatcgtagc
     4921 cacgcgcttt cgcgacgatg gcagagccga gtttggggtc cggagtacaa ataacgaaac
     4981 cttttgcgcc actggcagcc aggctgtcga tcgcgttcaa tgttttttcg ccatccggca
     5041 cggcaatctt aataacctca aaccctaaat ccttcccggc tttatcggca aacttccatt
     5101 cggtctggaa ccacggctct tccggttgct tcaccagaaa accgagcttc aggttctccg
     5161 ccatagcgga ttgtgacata acggctgcca gaccaatggc tgccagggct ttagtaaatt
     5221 tgtgcatggt tctctccagc tttagtgtcg ttttgtgtag ggcaaaaacg aatgacattc
     5281 gttaaattaa tcggaaaaca aagcattacc ttttaactaa aagataagtg accgtgttga
     5341 catagtttta gcgagaaatt aattctccat aggagagcaa tatcacatcg cagaattaca
     5401 gtgagaacgt gcataaattt agcgggaaaa gacataaggg aaagccaatt tgtcagacaa
     5461 attgtcgaat gcacagcaga ttaatccata agattagctt ggaaatcctt gttgtctttg
     5521 gtacccatgc gggatgtctt ctttttaacc agtcaatagg ccgcattacc tggcgttgag
     5581 tttttgaaat ggtgtaataa ccgcaactca aagatgtgga aaatgcacgt cattcatttc
     5641 gccattaatt atcactgtgc tcattaatta acagaacacg tataatgaga gccatctcgc
     5701 aaaaatgaaa aaacgtttta taaaatcatc atttcatcaa tgaaatgtaa aaatatataa
     5761 acttgatgat ttaagcattt ttttataccc gttcagacgt tattcttatt tcagatcatc
     5821 gtcagaattg actccacgat cacatttcgg accggcagaa aggaattatt ctgcaaacag
     5881 taattatggt gttttgattt atcttgcacc tctccacttc tggatataag gatattaggt
     5941 atggcaaccg ctggaatgct tctcaaactc aactctcaaa tgaaccgcga gttttacgca
     6001 tccaatctct accttcacct gagtaactgg tgttctgaac agagtctgaa cggcaccgcc
     6061 actttccttc gcgcccaggc acagagtaat gtgacccaaa tgatgcgcat gtttaacttt
     6121 atgaagagtg tcggcgctac ccccatcgtt aaagccattg atgttcccgg tgaaaaactg
     6181 aactctctgg aagaactgtt ccaaaaaacg atggaagaat acgagcaacg ttctagtacg
     6241 ttggcacagt tagccgatga agcgaaagaa ctgaatgatg attcaaccgt caatttcctg
     6301 cgcgatctgg aaaaagaaca gcagcatgat ggtctgttgc tgcaaaccat tcttgatgaa
     6361 gtgcgcagtg cgaaacttgc tggtatgtgc ccagtgcaga ccgaccaaca tgttctgaat
     6421 gtcgtgtcgc atcagctgca ttgatcatac atcggcgcta atgcattgcg ccgatgaagt
     6481 ttttgagaaa ccgctgcctc atctttttga agcagcggtt ttttaatggg attcgccttg
     6541 tggggtaaac ttgagttcaa tcagcgcgat ggctttttgg attgcccgca tggtgaccgg
     6601 gtctgcggcg gcgggatggt tactaaagtc gatattcttc agctgactgg acattttttc
     6661 acgaacttca acgggcgcga ttacatcgag aacatccaga atttgtttga taaccaactg
     6721 gcaagcaacc acatcagaaa ccagttcctg atcggcattc agcggctggg acatcgtaaa
     6781 ctcctgatag cattttgaaa gccgttatag tagcggcttc acatcttcag cgatagtcac
     6841 atccaccgtc atcaggacac aaaaaaacct gccggagcag gttttttgtt atcggaacat
     6901 attgcctggc ggtacgtctt tgaacgtctt gcaatagtta ttgaacatac ttttcaggat
     6961 tttgcgcagt ttcatcgcgg cactccgacc atttgttata catgtgttat tttctttgtg
     7021 cttataatat gacaaccatc acaaaaatca atctttatgt gatgcaaatc acacaaatac
     7081 ccccttaatg ttataaaaat gataatcaaa aaacagcccc ccatttctga cacctacaga
     7141 tggcaagaaa tagcgcctgc caggcgtctt ttccggtcat tgtcgcagcg ctgtaacgcg
     7201 taaaatagtg ctttctttta ctcttctggc tggaccatga gacttctgat tctgactctt
     7261 tcattaataa cgctggcggg gtgtacggtt actcgccagg cccatgtgag cgaagttgac
     7321 gcggcaacag gtattgtacg gttggtttat gaccaggctt ttttgcagca tgcccatacc
     7381 gatcgttatg tcagtcgcgg gatcgccgat cgcgcatgcc agcaggaagg ctatacccac
     7441 gcgatcccct ttggtcagcc agtaggcaac tgtagccttt ttgcgggttc cttatgtttg
     7501 aatacggaat tcactttgtc atatcagtgc catcattccg ccttccctgt ctttctctaa
     7561 atattttaat cagcgagggg atcttcgctg attaaaaaaa tagcggtaat gcgttttatt
     7621 cccattcgta tttttaataa ttgaagttta tattttacct tttgcaaata ataaaataac
     7681 aaattatagt gacgccacag caacaaatat aacctttgtg gagcactatc atgctgaaac
     7741 cagaaatgat tgaaaaactt aatgagcaga tgaacctgga actgtactct tcactgcttt
     7801 atcagcaaat gagcgcctgg tgcagctatc ataccttcga aggtgctgcc gcgttcctgc
     7861 gccgtcacgc ccaagaagag atgacgcata tgcagcatct gtttgattac ctgactgata
     7921 ccggcaattt accgcgtatt aataccgttg aatctccgtt tgctgaatat tcctcacttg
     7981 atgaattatt ccaggaaacc tataaacacg aacaattaat cacccagaaa attaacgaac
     8041 tggctcatgc tgcaatgacc aatcaggact acccaacatt taatttcctg caatggtatg
     8101 tttctgagca gcatgaagaa gagaaactgt tcaaatcgat tattgataaa ttaagcctgg
     8161 caggcaaaag cggcgaaggt ctgtatttta tcgacaaaga actctctacc ctcgacacac
     8221 aaaactaata ctctccggcg gcaggtttac tgccgccgtt tcaaatcagt gacggcaaat
     8281 cttactctga tcggtcgaaa aaccgtcttt cgaaggtata aatttgcctt ttgctgccag
     8341 aaacgctacc agctctcccg ctgtcatccc ttctgccgag caggtgtgaa aacgtgcctg
     8401 ttcaccaaaa cgcgctttaa ttgctgcttc cagactggca tgcgtatatt gctcgcctga
     8461 ttcaatcatc atatttaaca cttcatgacc gtgaatagag tccatcgttc ctcctcaaaa
     8521 aaagcctagc gtagcgattg ccgcttatga agactttgcg ccagagcaga actgaatgct
     8581 ttttattgta catttatatt tacaccacat gtaacgtcgg tttgacgaag cagccgttat
     8641 gccttaacct gcgccgcaga tatcactcat aaagatcgtc aggacagaag aaagcgtgaa
     8701 aaacagaact ctgggaagtg tttttatcgt ggcgggaacc acaattggcg caggcatgct
     8761 ggcaatgccg ctggctgcgg caggtgttgg ttttagcgtc acgttaatct tgttgattgg
     8821 gctttgggcg ttgatgtgct acacggcgct attactgctg gaggtgtacc agcatgttcc
     8881 ggcagatacc ggtctgggca cgctggcaaa acgctatctg ggacgctacg gtcaatggct
     8941 gacgggcttc agtatgatgt tcttaatgta tgctctgact gcggcataca tcagcggtgc
     9001 cggtgaattg ttggcctcca gcatcagcga ctggacaggt atttcaatgt cggcaaccgc
     9061 tggcgtgctg ttgttcactt ttgttgccgg tggcgtggtt tgtgttggaa catcgctggt
     9121 cgatttattt aaccgttttc tgttcagcgc caaaattatt tttctggtgg tgatgctggt
     9181 attgctgcta ccgcatattc acaaagtgaa tcttttaacc ctgccgttgc aacaggggct
     9241 ggctctgtca gcaatcccgg tgatttttac ctcatttggt tttcacggta gcgtgcagag
     9301 tattgtcagc tatatggatg gcaacgttcg taagctacgc agggtgttta taaccggtag
     9361 tgcgatcccc ctggtggcat atattttctg gcaggtggca acgcttggca gcattgattc
     9421 aacaaccttt atgggattgc tggctaatca tgctggatta aacgggctgt tacaggcgtt
     9481 acgcgaaatg gtggcctctc cgcatgttga gctggcagtg catttatttg ctgatttagc
     9541 cctcgccacg tcatttctcg gcgttgcgtt aggcttattt gattatctgg ctgatttatt
     9601 tcagcgttca aataccgttg gtggacggtt gcaaactggt gcaattacct ttctgccgcc
     9661 gttggcgttt gcactgtttt atccacgagg atttgtgatg gcgctgggtt acgccggtgt
     9721 ggcgctggcg gtactggcat tgattatccc ttcgctgttg acctggcaaa gcagaaagca
     9781 caatcctcag gcgggttacc gggtcaaagg tggtcgtccg gcgctggtgg tggtgtttct
     9841 ctgtggtatt gctgtgattg gcgtgcaatt tttgattgcg gcagggttgt taccagaagt
     9901 gaggtgatca gatagcctca aattccttat tgggtgccag aattaacgct gacacccaat
     9961 ttggcctctt aatgcaggca gcactgctta aatttcttac cactaccgca cgggcaagga
    10021 tcgttacgcc ccggtttctc ttctgctttg atcggttgct gaacagcttt ttcctgcgga
    10081 tgcgccatcc agtacgcatg tagatcaagc gccgccagtc gaatggcatc tacgctctct
    10141 tcaaacgctt ctggcgacat cttttctacc cgctcgaagt tttcctcagt accgtgcagc
    10201 gcaatcgcct ccagcgctgg ttttaacgaa tcgggcaacg ttgaccagtc agaaagtgcc
    10261 acgccccgca tatagccaaa gcaccactcc tcaacaatcg tcagctcgct gccatcaact
    10321 tctcgcaagc cgaataacgg ctcaaactgc tccgggaatt cgttcagacg ctctgcggta
    10381 tcggccatat gttgaaaagc caggttcata aagcgcgtca tctctttctc tgacgcccag
    10441 cgcggcacat agtcagcccc accccacacg gcaaccagcc actgttccgg ttcaatctct
    10501 tgcggagaac tcaacaccgc cgtcaataaa tcgtccagct ccgccacatc aaggatggcg
    10561 tggttagtgt tgtatttggt cagaatatcg tccagccatt ccaactcact ttcgtttaac
    10621 ggtcccgttt tcatacgctt ttccttgtgg atctcaactc gccagcacct atcttacatg
    10681 ccggtccgta tcagagatac tttttgagtg gctttgccgg tgattaaaaa ttaaggaggg
    10741 tgtaacgaca agttgcaggc acaaaaaaac cacccgaagg tggtttcacg acactgctta
    10801 ttgctttgat tttattctta tctttcccat ggtacccgga gcgggacttg aacccgcaca
    10861 gcgcgaacgc cgagggattt taaatccctt gtgtctaccg attccaccat ccgggctcgg
    10921 gaagaaagtg gaggcgcgtt ccggagtcga accggactag acggatttgc aatccgctac
    10981 ataaccgctt tgttaacgcg ccaaattctt caggcctttc agccagacat ccgcttgacg
    11041 ccgatgtctt ttaaactgga gcgggaaacg agactcgaac tcgcgacccc gaccttggca
    11101 aggtcgggct ctaccaactg agctattccc gcattcatta agcaatcagt taatcacttg
    11161 attttattat cgtctggcaa tcagtgccgc cgttcgatgc gttgcattct acttacctgg
    11221 cgcgatgagt caacgatatt tttcaccact tttgatcgtt tgctgaaaat tacgccgaaa
    11281 cgatcactga tcaagcaaat ctgcacgcgc agcgctcaaa tattgcaaca ttgaccacag
    11341 agtcagcacc gcagccacaa agaaaagtgc aataccggcg tactcaaccc aaatgttcgg
    11401 acgccacagc agccaggcca acgccaccat ctgggcagtg gttttcactt tcccaatcca
    11461 ggagacagcc acgctactgc gtttacccaa ctccgccatc cattcgcgta gcgcagaaat
    11521 aataatttca cgggcgatca tcgttgccgc cggtagggtc acccaccagc tgtgataatg
    11581 ctcggttacc agcaccatgg cgatagccac gagaacttta tctgctacag ggtcaaggaa
    11641 agcaccaaac cgggtactct ggttccagcg gcgtgccaga aaaccatcga accagtcagt
    11701 caccgccgcg acgcagaaaa tgagcgcggc ggcaaacggc gaccaggtga caggcagata
    11761 aaagagcaat acaaagaatg ggataaggat gacacggaac agtgtaagca acgtagggat
    11821 attaaattgc ataatgacgg gtaactatct gttgtcagta agattacccc tatgttgcta
    11881 cagagacatc aatgtttcaa cgaccagaag atcttttctg ccagaccttg cgaaataccc
    11941 ggcacttttg caatttcctc gacgctggcg ttacgtaaac cttgcaaacc gcccatatat
    12001 ttcaacaaca tttgccgacg ttttggcccg acgccttcaa tggtttccag ggaactggta
    12061 tttttgacct tcgcccgttt tttacggtgc ccgccaatcg cgtgatcatg tgattcatcg
    12121 cgaatatgct ggataacatg cagcgcgggt gaatctggcg gcaaactaaa tccctcatct
    12181 tccggctcaa agaacagcgt ttccagtcca gccttacgat ctgctccttt ggcaacgcca
    12241 agtagcagcg gatgattttt atcccatgag acatccagtt cggcgaagac atttttcgcc
    12301 tgcgcaagct ggcctttgcc gccgtcgata aggatcacat ccgggatctt actgtcgtca
    12361 atggctttac cataacgccg acgcagcacc tgattcatcg ccgcataatc atcgcccggc
    12421 gtgatgcctg taatgttata gcgccgatac tccgcacgca gcgggccgtt agcatcaaac
    12481 accacacagg aagcgacggt ttgttcgccc atggtatggc tgatgtcaaa gcactccatc
    12541 cgcttcactt ccggcaattt caacacgctg gcaagcgcgg tcagtcgctg gtgaacggta
    12601 gattgctgcg aaagtttgct ggttaaggcc gtcgccgcat tggtgcgcgc gagtttcaga
    12661 taacgcgccc tatcgccgcg aggtttggtt tgaacattaa tcttgcgtcc cgccagttct
    12721 gaaagggaat cggcgagcag cgttttatcg ctaagattaa aatcgagcag gatctcaccc
    12781 ggtaaggtgc gcatctggct gccttgtaaa tagaactgac ctacgaaggt ttctaccacc
    12841 tcgctcagtt ccgtaccgcc aggcactttc gggaaatagc tgcggctgcc gagcactttg
    12901 ccctgacgaa tgaacaatac gtggacacaa gccatgcccg catcgaacgc cacaccaata
    12961 acgtcaaggt cgtcgccggt attggaaaca aactgttttt cggtgacgcg tcgcaccgcc
    13021 tgaatttggt cgcgaatacg tgccgcttct tcaaactcca gattctgact ggcagtttcc
    13081 atacggctaa tgagttgcgt aagcacctga tcatctttgc cagacaaaaa caggcgcaca
    13141 tactcgacct gctgagcgta ttcttcttca ctcaccagtc cttcaacgca cggtcccaga
    13201 cagcgcccta tctgatattg cagacacgga cgcgagcgat tgcgataaac actattttcg
    13261 cactggcgaa tggggaaaat cttttgcagt agcgccagag tttcacgtac ggcatagcca
    13321 ttcgggaacg ggccgaaata ttcacctttg gcatgcttcg caccacgatg catcgccaga
    13381 cgcgggtggg tatcgccact caggaagata aaaggataag atttatcatc gcgtagcaaa
    13441 acgttgtaac gcggctgata gagtttgatg tagttgtgtt ccagcaacag cgcttcggtt
    13501 tctgtatgag taaccgttac atcaatttgc tgaatctggg cgaccagcgc ttcggttttg
    13561 cgcgaagcga ggttgctacg gaaatagctg gaaagccgtt ttttcaggtc tttcgctttg
    13621 ccgacataga taaccgtacc accagcatcg tacatgcgat aaacgcctgg ctggctggtt
    13681 acggttttta aaaacgcttt tgcgtcaaac tgatcactca ctgacttgat aatgtctccg
    13741 cattacacag accatggcga attgccaggt gagtcagctc aacatcgcca tgaatgttta
    13801 gtttactgaa catacgatag cggtagctgt tcaccgtttt cggactgaga ttgagctgtt
    13861 ctgagatctc attgaccttc tggcccttgg tgatcatcag cataatctgc aattcacgtt
    13921 cagacaaact ggcaaatggg ctttctgttt tttctggttc gatctggctt aacgccattt
    13981 gttgagcgat gtcagaagca atgtaacgct gccctgaata gacagaacga atcgcactca
    14041 cgacttcctg cggagccgcg cctttgctga ggtagcccgc agcaccggcc tgcatgactt
    14101 tcgctggtaa agggttttct gtatgaacgg taagcatgat gattttgaca tcagctgtgg
    14161 aacgcgcgat tttacgcgtc gcctcaagac cgccaatgcc cggcatactc atgtccatta
    14221 gcaccacgtc aacggcattt gtccggcacc acttaacggc gtcttcaccg cacgatgcct
    14281 caccgacgac ttttataccc tttatatctt ccagaatgcg tcgtatccct gcgcgcacca
    14341 gttcgtggtc atcaacaagt agaacgttga tcaaagaaat atctccagaa atagggataa
    14401 cgctactgat agttagtcat tcgtatatta gcggttttta ttgcaacttt gaaacgttaa
    14461 aaatggtggg tattcgattt ttctctcgtt tttgtcaatt cgattgtcca cagttatggt
    14521 cacgcccgtc accaacggct taccggatcg tttcacagta agccctacga tgaaatgtga
    14581 caaaaattga ctttattcag caaaaatgaa aatcagcccg ctgaatatgt aacattaatt
    14641 aacccgaaca atacgggcaa aaacattcat gataaaaata tttattggtc attatattaa
    14701 cgtattttat agcactgccg atatcacgct caaaaaacaa ccactgctat ttttagcaaa
    14761 gcttatggta tactccgccg ccttaacatt tttcaccgca aattttcatt gcaacatgac
    14821 gaggaaaata aatgagtacg cctgattttt ctactgccga gaataatcaa gaactggcaa
    14881 atgaagtctc ctgcctgaaa gcgatgctga cgctgatgct gcaggcgatg ggacaagctg
    14941 acgcgggccg cgtgatgtta aagatggaaa aacagcttgc gctgatcgaa gacgaaaccc
    15001 aggctgcagt attttccaaa acggttaagc aaattaaaca agcctaccgt cagtaatata
    15061 aaaccggctg agagcgtgcc tttcagccgg tttttgcatc tggcacgcag aaagaaaagc
    15121 gatcaaatta agccagtagc ggccgcgtaa caggccacct gggtcttatt tggtgcattg
    15181 atttttttct gcatgttttt ctgatggaaa ttgaccgtat tctcagagat tgacaaaatc
    15241 atcgctatct ctgctgatgt cttcccttcc gccgtccatt tcagaatttc tttttcgcgc
    15301 ttgctgaaat tcatctctgg cgtcatcact atttcatcat ttaaacgcat cagagccatc
    15361 agactttcgc gcaccagtaa ctgcattttt aattgcagtt catcactaag aatgggtatt
    15421 tcgcgtgtgc tgcaacggga aaaggacaaa aagcccagcg cccgatttgg cagcattaaa
    15481 tactgagtga caccgcggcg taaaccatgt gcgtgcgcgg cttcccataa tggctgtgct
    15541 tcgctgaata agtcatcatt ccacattaaa tggccctgac taaagttttc agggttcagc
    15601 acaggatcaa ttgcgagaaa attagcacag gatcaattgc gagaaaattt tttgcctgat
    15661 aataactaac ccacgactca gggtaattgg tgtagaaagc cactttaggt cgcgtgaatg
    15721 gtaccgggtg gcgaacacat aacgaatagt aatcgtactc cagctgctga gcctgaagct
    15781 ctatttcatg gtagacctct tctgcggcct ccatcctctg aaaacgcaac agcatcgtgc
    15841 gacgccaact gaaaaaatcc gtatcctgca tagtaaaccg caacgcccct gagagtgagt
    15901 atcatttata atgataattc aaactatcac ataaataaga tttatatata atttatatta
    15961 ttcaggcaat gaattacttt tgcaagccat cgcattctct tatgttatta atgagttatg
    16021 ctgatttgtt aagcagtttt atcacgcttg aaatggcgtc ccgccccgac aggtgaatcg
    16081 tcggggctga ttttttctta ttattgcagc agaaacttct cgaggaactg tcgggtgcga
    16141 ggctgctggg gatcggcaaa taacgctttt gctgccccct gctcgactat ccgccccagg
    16201 tccataaaaa tcgcccggtc cgcaacatcc cgggcaaagc tcatttcgtg cgtcacaatc
    16261 accatcgtgc gcttttcctg cgccagctgg cggattgtgt tcaggacttc gcccaccagc
    16321 tctggatcca gcgctgacgt tggctcgtca aacaaaatca cctcaggacg cattgccagc
    16381 gcacgcgcaa tcgctacacg ctgctgttga ccgccagaca aacgacgtgg atagctggtt
    16441 tctttaccgg ccagcccaac tttcgccagc agctcgcgag cgcgcgccgt ggcctcttct
    16501 ttcggttcgc ctttgacgat caccggccct tcaataatgt tttccagcac cgtacgatgc
    16561 ggaaacaaat taaagttctg gaagacaaac ccgacgtgct gacgcaactg gcgaatcagc
    16621 gatttttgct gacttaatga acgtgcagta tcaatagtga tatcgccaac ggtgatcgtt
    16681 cccgcttccg gttgttccag cagatttatg ctgcgtagca acgtggtttt gccggaacca
    16741 ctcggaccga taattgccac cacttcgcca ggctttacct cgaggtcgat accgtgcagc
    16801 accgtctgac cttggaattt tttcaccagg ttcttaactt caatggcact catttgggtt
    16861 ctctctcctg gcgattaagt tgattctcaa aatggttctg caacgtcgat aacacagtcg
    16921 ccatgatcca gtagatgagc gaagccgcca ggtacatggt gaacacctcc agcgtgcgcg
    16981 aggtaatcaa ctgcgcctga cggaacagct ccggcacctg gattgtcgcg gccagcgacg
    17041 tatcttttac cagactgata aagctgttcg acagcggcgg caacgccacc cgcgccgcct
    17101 gtggcaaaat cgcgcgacgc atggtctgcc acggcgtcat accaatactg gcagcggctt
    17161 cccactgacc tttatcaata gaagaaatgg cggcgcgcag cgtttcggcg gcataggcgg
    17221 cagtgttcag cgacagacca atcattgctg acagaatggg atctaattcg ataccaaact
    17281 gcggcaggcc gtaatagatc ataaacagtt gtgcgatgag cggcgtacca cgaaaaatag
    17341 agatataaaa acgcgccagc cagcgcacgg gccagattgg cgacaggcgc atcagcgcga
    17401 gaataaaccc gagtagtaag ccaaaaaaca tgccgccgat actgagttgc agggtatacc
    17461 cagccccttt caacaggaac ggcaaggaat caataaccag ttgtatactt tcttgcatga
    17521 gcgttcccgg agctaaacgt ggggatgata ggcgaacagc gcaggcgcgc cgccggtatg
    17581 aataaacaga atcggccctt catctttgaa gcgtttctga ctgataccgt caatcagccc
    17641 cgccatcgct tttccggtat acacaggatc aagcagaatg ccttccagac gcgccagcaa
    17701 tttcactgct tccatgcctt cgtcgttcgg cacgccgtag ccaggtgcaa aatagtcatc
    17761 ccagagtaaa atttccgctg atgcggtcag ctccagttct ttcgcaatcg cctgttgtag
    17821 gttaaccact ttcggcaatt gatcggcaac ggaacgcgac acggtcacgc caatcagttc
    17881 gctttcaggc atcaggtgtt ccagcccaac agccaatccg gcgtgagttc cggcactgcc
    17941 cgatgcgacc accaccgacg aaatattaac cgccccttca cactgttgcg cgatttccag
    18001 cgcactctcc acataaccca gcgcgcccag agcattagaa ccgccaaccg gaatgacata
    18061 cgggcgaaag ccttgtgctt cgactcgcgt cgccagctct tccagttggg cattgggatc
    18121 ggtcagtgcg tcgcacattt caatctgggt attgaacaga ttcagcaaca aacgattgcc
    18181 gttggttaaa tagttttctg cggttgtgcc aataggattt tccagcagcg ccacgcagtg
    18241 caggccgagt ttcgccgcaa ctgcggcagt ctgccgcaca tggttagact ggatcgcgcc
    18301 ggcagtaatc agcgtatcgg caccttcgcg cagggcatct gccgcgagaa attccagctt
    18361 acgtaattta ttgccgccca ttgccatggg tgtgacgtca tcccgtttga tgaaaatttc
    18421 ccgtccaaga taatcagaaa agcgcggcag atattcgagc ggcgttggcg cgccgataaa
    18481 ctccagccgt ggaaaacggg ttaaattatg cagtggcata atagcctccg atgtgtgttg
    18541 ttgtgatttt cttattatgc acgctgaaaa cgcgtaaata aaaaaggcgc tagtgaaagc
    18601 gccctttttt gtcattatgc tgattatttg gtcacatcag caccaaacca tttttcggaa
    18661 agggcttgca gagtgccatc tttttgcatt tccgcaattg catcgttcac tgctttcagc
    18721 aggtcttcat ttcctttacg cagcgccacg ccagactcct gacgggagaa tgcttcaccg
    18781 gttactgcca gcgtatcgtt ggttttcttc accagatcca gcgccgccag acggtcaacg
    18841 aggatcgcat cgatacggcc tacgcgcaga tcctgatatt tggtcgggtc atcatcatag
    18901 gtacgcacat cgacgccctg aacattctgc cgcagccact cttcatagtt ggtgcccaga
    18961 ccgacaccca cttttttgcc tttcagatca gcagccgttt taatggtgcc ttcgttacct
    19021 tttttcacca gcgcctgaat accagaaatg gtgtacgggg tagagaaatc gtattttttc
    19081 ttgcgctcat cagaaatggt gacctgatta atcaccacat caatacgttt agagtccagc
    19141 gacgctagca taccgtccca tttggtcggt tttagtgacg cctcaacgcc aagatgtttt
    19201 gccagctgtt gggcaaattc cacttcaaaa ccggttaatt tgccgtcatc cccctgaaaa
    19261 ctgaacggcg gataagttcc ttccagccct accagtagcg taccgcgctc tttgacttta
    19321 ttaagcagac cttcatctgc aaaactttta acgctcatgc ccgcaaccag cgccacggcc
    19381 atcacaccca tcaatgcctg acgtcccaga tgtgctaatt tcatattcac cccgaatgtt
    19441 gttatgtctg tttgcagtgt agagccattg tttgtaaaca caaaaacaac tccgctacat
    19501 cttattctta tttaatatat atcagaagca ggcaggctgg aggatttctg cacaagtccg
    19561 gtacacgttt gacgctgata gtgttgatac ttccgtaatg cgatgcggta attgttggtg
    19621 ctggtggtgg gcagccacgg ggcgaggatt tcatcaagga aaccgtcctg cagctgatcg
    19681 agggaaatat tttgctcatg tagatgattc cccaaacggc gcaaacgaac gacatattca
    19741 cgcaccgtac ctgggctcat ttcagtttgc tcaaaaagaa attgcttaaa gccgataata
    19801 tcgaaaaaat cactctgcgt tttgcaatgt aaatcaccgc aaaatcggca caatgccgcc
    19861 catgactgtt gttccacttg ccagccattt tcatcaagca gcgtgtccag gcgggaaatc
    19921 tcgattttat tcactatttt gccgtcgcga actaaggtaa tgcgatcgag taatttacgg
    19981 caatgcgcgc aatgggcctg gctgtgttta aagtctttaa gatagcggct taatggccgt
    20041 cttttcaggt gctgcaccat cattaagaac tcctggtagt caaagttaaa gtgcggcatt
    20101 tactgacgtt ataacttacc cagtttagtg cttaaccgtt taatggcctg gctgtgtaac
    20161 tgactgaccc gcgattcccc gacctccagc accgcgccaa tctctttgag attcagctct
    20221 tcctggtaat agagggttaa taccagtttt tcgcgctccg gcaacgtttc gatagcttcc
    20281 atcacccgct ggcgcagatt actgtccagc agttgttgta gcgggttttc tcgctgatga
    20341 tcatcagtaa ccagttcgat gctatcgccg tgctcttcgc gccactcatc gtaggagaaa
    20401 agctggctgt tattggtgtc gagcaacatt tggcgataat cggcaatatc gatccctaaa
    20461 cgttccgcta cctcagtttc cgtggcgttg cggccaagtt cctgctccag ttgccctatt
    20521 gcctgtgcca cttcacgcgc gttgcgtcgc acgctgcgcg gcacccagtc acggctgcga
    20581 agttcatcca gcatagcgcc acggatacgc tgcactgcgt aagttgtaaa tgccgttcct
    20641 tgtagggcgt catagcgttc gacggcatta agtaacccaa tgccgcccgc ctgtagcaga
    20701 tcgtcaagtt ccacgctcgc gggcagtcga acctgcaggc gcaatgcttc gtgacgcacc
    20761 agcgggacat aacgctgcca cagcgagtgt ttatccatta caccttcagc ggtatagagt
    20821 gaattcacga taaacagccc tgcgttatat gagttatcgg catgattatc cgtttctgca
    20881 gggtttttaa tcggacgatt agtgggtgaa atgaggggtt atttgggggt taccggtaaa
    20941 ttccatgcag aaaaaacccc gccggtggcg gggaagcacg ttgctgacaa attgcgcttt
    21001 atgttgccgg atgcggcgta aacgccttat ccggcctaca aaaatgtgca aattcaataa
    21061 attgcaattc accttgtagg cctgataagt gcagcgcatc aggcaatttg gcgttgccgt
    21121 cagtctcagt taatcaggtt acgacgatta accctgcagc agagacagaa cctgctgcgg
    21181 tacctggttg gcttttgcca gcacggagtt accggcctgc tggatgatct gcgctttcga
    21241 catgttggac acttcggtcg catagtcggc gtcctgaata cgggactgcg cttcagacag
    21301 gttggtagtg gtgttgttca ggttggtgac tgcagaatcc agacggttct gaatagcacc
    21361 cagggatgaa cggaatttgt cgatggagct gatagcttca tccagggcag ccagaggatc
    21421 tttggttgca gtgcctgcac tggtggtttc agtggtcagt ttgcctgtag agttaacata
    21481 agcctgtgcc ccaacagtag ctgcaaattt accagttgca cctgcgccat ttgaagctac
    21541 agttactgta ccggtatcct tatcgacgtt gtagttgata gtgtaagatg cggttgtggt
    21601 gagctctttg tctgcatcag tataggtgtc attcgaatta ccagcaccat tagtattcgc
    21661 accaccgaag gacgccgttg cagactgaat acctgtatta tacttaattg tcgcaccagt
    21721 aactgctgtg ttagccgttg cagcactctg cactgtgctc agtacagtat cagcgcttac
    21781 agttttggtg taggttacgc cagaagttgc cgctgcacca aagttataag ttgtgccaga
    21841 caactggata gaaccagttg tcgctaaggt actaccgcta gcaaacagat cggacaattt
    21901 cgctgaagat gcaatgccgg cgttgtttgt agataggtta ccagtggcgt ccaggtacgc
    21961 ggctttacca ccgatggtca catcgccatt agcatctaca tcaaacttca catcaccagt
    22021 actacgagta taaacacctg atgcagtagt gccagccgct ggtttcagag tattcgcaaa
    22081 gttaacaaca tcgccatctg caactgttgc ttgagtggtg aagttccctt tagccgcatc
    22141 ataagtatag atcgcagcac tcgagccagt agtagtaact gtatctccgg ttttcaggcg
    22201 agacagtgca tcgctagcgc tgagtgctgt attgtttgtg gtcacagcat aaggacctgt
    22261 tcccgttgca ccagcagcgg tcagatcgct gactgtagca gctttgttcg caatagtgcc
    22321 tttgccattc acgttaaaac cattcagccc cagcgtatct gagtcaattt tcttcagatc
    22381 aatcgtgata gtctggccgt cattcgcacc aacctgaatt ttcattgaac cgtctttcgc
    22441 cagtacgttc acgccgttga actgggtctg gccagatacg cggtcaattt cgtccagacg
    22501 ggatttgatt tcgtcctgaa tggagtccag atccgaatcg gagttagtcc cggtagaagc
    22561 ctgaaccgtc agttcaagaa tacgctgtaa gttgttgttg atttcggaca gcgcgccttc
    22621 agtggtctgc gcaacggaga taccgtcgtt ggcgttacgg gccgcctgag tcaggccttt
    22681 aatattagaa gtaaaacggt tagcaatcgc ctgacctgcg gcgtcatcct tcgcgctgtt
    22741 aatacgcaag ccagaagaca gacgctcgat agaactcgac agcgcagact ggttcttgtt
    22801 gatattattt tgagtgatca gcgagaggct gttggtatta atgacttgtg ccatgattcg
    22861 ttatcctata ttgcaagtcg ttgattacgt attgggtttc cacccgtcgg ctcaatcgcc
    22921 gtcaaccctg ttatcgtctg tcgtaaaaca acctttagaa tttttttcac aaacagccat
    22981 tttttgttag tcgccgaaat actcttttct ctgcccctta ttcccgctat taaaaaaaac
    23041 aattaaacgt aaactttgcg caattcaggc caataacccc ggtattcgtt ttacgtgtcg
    23101 aaagataaaa ggaaatcgca tggcaagtat ttcatcgctg ggagtcgggt caggtctgga
    23161 tttaagttca atccttgata gcctcaccgc cgcgcaaaaa gcgacgctaa cccctatttc
    23221 aaatcagcaa tcgtcgttta ccgctaaact tagcgcctac ggtacgctga aaagcgcgct
    23281 gacgactttc cagaccgcca atactgcatt gtctaaagcc gatctttttt ccgccaccag
    23341 cactaccagc agcaccaccg cgttcagtgc caccactgcg ggtaacgcca tcgccgggaa
    23401 atacaccatc agcgtcaccc atctggcgca ggcgcaaacc ctgaccacgc gcaccaccag
    23461 agatgatacg aaaacggcga tcgccaccag cgacagcaaa ctcaccattc aacaaggcgg
    23521 cgacaaagat ccgattacca ttgatatcag cgcggctaac tcatcgttaa gcgggatccg
    23581 tgatgctatc aacaacgcaa aagcgggcgt aagtgcgagc atcattaacg tgggtaacgg
    23641 tgaatatcgt ctgtcagtca catcaaatga caccggcctt gataatgcga tgacactctc
    23701 ggtcagcggt gatgatgcgc tacaaagttt tatgggctat gacgccagtg ccagcagcaa
    23761 cggtatggag gtctcggtcg ccgccaagaa tgcgcagctg acggtcaaca acgtcgccat
    23821 tgagaacagc agcaacacca tcagcgacgc gctggaaaac atcaccctga acctgaacga
    23881 tgtcaccacg ggcaaccaga cgctaaccat cactcaggac acctccaaag cgcaaacggc
    23941 gattaaagac tgggtgaatg cctataactc gttaatagat accttcagta gcctgaccaa
    24001 atacaccgcc gtagatgcgg gagctgatag ccagagttct agcaatggcg cactgctcgg
    24061 cgactccacg ctgcggacga ttcagacgca gttgaagtcg atgctgagta ataccgtcag
    24121 ttcttccagc tataaaacgc tggcgcagat tggtatcacg accgatccca gcgatggcaa
    24181 actggaactg gatgccgaca aactcaccgc tgcactgaaa aaagatgcca gcggcgtagg
    24241 tgcattgatt gttggcgatg gtaaaaaaac cggcatcacg accaccatcg gcagcaacct
    24301 gaccagttgg ctttcgacaa cgggcattat taaagccgct accgatggcg ttagtaagac
    24361 cctgaataag ttaactaaag actacaacgc cgccagcgat cgcattgatg cgcaggtcgc
    24421 gcgctacaaa aaacaattta cccaactgga cgttttaatg acctcgttaa acagcaccag
    24481 cagctactta acgcagcagt tcgaaaacaa cagtaattcc aagtaatcat tattcatcgg
    24541 gagacaggtc atgtacgcgg caaaaggcac ccaggcctat gcacaaattg gcgtcgaaag
    24601 cgccgtaatg agcgccagcc agcagcagct ggtcaccatg ctatttgatg gagtgctgag
    24661 cgcactggtt agagcgcgcc tgtttatgca ggacaacaat cagcaaggca aaggcgtctc
    24721 tttgtcaaaa gcgatcaaca tcattgagaa cggactgcgg gtgagtcttg atgaagagag
    24781 caaagacgaa ctaacccaaa acttgattgc tctttatagc tatatggtca ggcgcttgct
    24841 gcaagccaat ttacgcaacg atgtctccgc agtcgaagaa gtggaagcat taatgcgcaa
    24901 tattgccgat gcctggaaag agtcgttact ctccccttct ttgattcagg acccagtctg
    24961 atgaaccatg caccgcattt gtatttcgcc tggcaacaac tcgtcgaaaa aagccagctc
    25021 atgttacgcc tggcaacgga agaacaatgg gacgaactca tcgccagcga aatggcgtat
    25081 gtgaatgcgg tgcaggagta tagcacacct gactgaagag gttgccccgt ccaccacgat
    25141 gcaggagcag ctccgcccga tgctgcgcct gattctcgac aacgaaagca aggtaaagca
    25201 gttattacag attcgtatgg atgaactggc gaaactggtc ggtcagtcat cggtgcaaaa
    25261 atcggtgtta agtgcctatg gcgatcaggg cggctttgtg ctggctccgc aagataactt
    25321 ctcgtgaatc ttaacgagct aatggttcgc gaataatccg attacggcta cgcttctaat
    25381 gttccccttg aatggagtcg aagaatgcgt aatcccacgc tgttacaatg ttttcactgg
    25441 tattacccgg aaggcggtaa gctctggcct gaactggccg agcgcgccga cggttttaat
    25501 gatattggta tcaatatggt ctggttgccg cccgcctata aaggcgcatc gggcgggtat
    25561 tcggtcggct acgactccta taatttattt gatttaggcg agtttgatca gaaaggcagc
    25621 atccctacta aatatggcga taaagtacaa ttgctggccg ccattgacgc cctgaaacgt
    25681 aatgacattg cggtgctgtt ggacgtggta gtcaaccaca aaatgggcgc ggatgaaaaa
    25741 gaagctattc gcgtgcagcg tgtaaatgct gacgaccgta cgcaaattga tgaagaaatc
    25801 attgagtgcg aaggctggac gcgttacacc ttccccgccc gtgccgggca atactcacag
    25861 tttatctggg atttcaaatg ttttagcggt atcgaccata tcgaaaaccc tgatgaagat
    25921 ggcatattta aaattgttaa cgactacacc ggcgaaggct ggaacgatca ggttgatgat
    25981 gaattaggta atttcgatta tctgatgggc gagaatatcg attttcgcaa tcatgccgtg
    26041 acggaagaga ttaaatactg ggcgcgctgg gtgatggaac aaacgcaatg cgacggtttt
    26101 cgtcttgatg cggtcaaaca tattccggcg tggttttata aagagtggat cgaacacgta
    26161 caggaagttg cgccaaagcc gctgtttatt gtggcggagt actggtcgca tgaagtcgat
    26221 aaactgcaaa cgtatattga tcaggtggaa ggcaaaacca tgctgttcga tgcgccgctg
    26281 cagatgaaat tccatgaagc atcgcgcatg gggcgcgact acgacatgac gcagattttc
    26341 acgggtacat tagtggaagc cgatcctttc cacgccgtga cgctcgttgc caatcacgac
    26401 acccaaccgt tgcaagccct cgaagcgccg gtcgaaccgt ggtttaaacc gctggcgtat
    26461 gccttaattt tgttgcggga aaatggcgtt ccttcggtat tctatccgga cctctacggt
    26521 gcgcattacg aagatgtcgg tggtgacggg caaacctatc cgatagatat gccaataatc
    26581 gaacagcttg atgagttaat tctcgcccgt cagcgtttcg cccacggtgt acagacgtta
    26641 tttttcgacc atccgaactg cattgccttt agccgcagtg gcaccgacga atatcccggc
    26701 tgcgtggtgg tcatgtcgaa cggggatgat ggcgaaaaaa ccattcatct gggagagaat
    26761 tacggcaata aaacctggcg tgattttctg gggaaccggc aagagagcgt aataaccgac
    26821 gaacacggcg aagcaacctt cttttgcaac ggcggcagcg tcagcgtgtg ggttatcgaa
    26881 gaggtgattt aaattcatcc ccggcggcaa gccggggaga tttcattacg gcagtggcgt
    26941 cggtaacggc gctttatcca gcgcggcggc acactctgcc gtcgggcgat ccacacgctc
    27001 catcgtcata ccatcgtact caatggtgtt accgtcacgc tcaacctcgt acagctcacg
    27061 ttttacggta acgttagtga gatcatcaga catcaatgcc aacttacccg gcacagcaat
    27121 cacccgctgc cactgacggc aatccagagt atcaccctct ttagtgacaa tcaggctgcc
    27181 tatcgcttcc ggactgacca gcgcacgttg cggccctttg gtctgccagt agcccgccag
    27241 ccagtccggc gcgggggttt tcacgacatt gttatagttt tcgacttcgg cacagcccgc
    27301 cagcaacatg agcgcgcctg caattgcgag ttttttcatc attcgtcctg catgagaaga
    27361 aaagaggatt gtggcattaa agccctgatg tcgccagcct ttccaggttc agagagaaat
    27421 ttgatctaac tattattttt gtgaattatt accccgaaaa taaatttgca tgatgtatga
    27481 ttcgcgactc ttgtttcaaa ccttctgagt tcagaggcta cattcatgtc atggcagcaa
    27541 ttcaaacacg cctggttgat taaattctgg gcacccatcc ctgcggtcat cgcggcgggt
    27601 attctctcca cttactattt tggcattact ggcacctttt gggctgtcac gggtgaattt
    27661 acccgttggg gcggccagct cctgcagctg tttggcgtcc atgctgaaga gtggggttat
    27721 tttaaaatta tccatctgga aggatcgcca ttaacccgca tcgacgggat gatgatcctc
    27781 ggcatgtttg gcggctgctt tgccgcagcg ctgtgggcca acaatgtcaa actgcgcatg
    27841 ccacgcagcc gtatccgcat tatgcaggcc attattggcg gtattatcgc tggttttggc
    27901 gcgcgtctgg caatgggctg taacctggcg gcgttcttta ccggtattcc tcagttctcg
    27961 ctgcatgcct ggttctttgc catcgccact gccattggtt catggtttgg cgcacgcttt
    28021 accctgctgc ccatcttccg tattcccgtg aaaatgcaga aagtttctgc cgcctcaccg
    28081 ctgacgcaaa aaccggatca ggcgcggcgt cgttttcgtc tcgggatgct ggtctttttc
    28141 ggtatgctgg gctgggcgct gctcacggcg atgaaccaac caaaactggg gctggcaatg
    28201 ctgtttggcg tcggctttgg tttactgatt gaacgtgcgc aaatctgctt tacttcggcg
    28261 ttccgcgata tgtggatcac cggacgtacc catatggcga aagcaatcat tatcggtatg
    28321 gcggtgagtg ccatcgggat cttcagttac gtacagttag gcgttgaacc caaaatcatg
    28381 tgggcgggac caaacgcggt aattggtggt ttactgtttg gttttggcat cgtgctggca
    28441 ggcggctgcg aaaccggctg gatgtaccgc gcggtagaag gccaggtgca ctactggtgg
    28501 gtcggtctgg gcaatgtgat cggctcgacg attctggcgt attactggga tgatttcgct
    28561 ccggcgctgg ccaccgactg ggacaaaatc aacctgctga aaacctttgg cccgatgggt
    28621 ggcctgctgg tgacatattt gctgttgttt actgcgctga tgttgattat cggctgggaa
    28681 aaacgcttct tccgccgtgc ggcaccgcag actgctaagg agatcgcatg aaaaatatcg
    28741 ttcctgatta ccgccttgat atggtgggtg aaccctgccc ttatccggca gtcgcaaccc
    28801 ttgaggcgat gccgcagtta aaaaaagggg aaatcctgga agtggtgagc gactgtccac
    28861 agtcgatcaa taatattcca ctggatgcgc gtaatcacgg ctatacggtg cgggatattc
    28921 agcaagacgg gccgaccatt cgttatttaa ttcagaagta atccctcatt cccgctgtgg
    28981 cccacagcgg gaacatcgtt gcctctgaca catagatttt acccgccccc tctcctattc
    29041 ttttcagtat gatctcagga ggtttctatg tgtggacgct ttgcccaatc ccaaacgcgt
    29101 gaagattacc ttgcgcttct cgcggaagat attgaacgcg atattcccta cgatcccgaa
    29161 cccattggca gatacaacgt cgcgccggga accaaagttc ttctgctcag tgaacgtgat
    29221 gaacaccttc atctggatcc ggttttctgg ggatatgctc ccggatggtg ggataaaccg
    29281 ccgctgatta acgcccgcgt agaaactgcc gcaaccagtc gcatgtttaa accgctctgg
    29341 caacatggtc gggcaatctg ttttgccgat ggctggtttg agtggaaaaa agaaggcgac
    29401 aaaaaacagc ctttttttat ctatcgtgct gatggacaac ctatttttat ggccgcgata
    29461 ggtagcacac catttgagca tggtgacgaa gccgaaggat ttttaattgt cactgctgca
    29521 gcagaccagg gtctggtaga cattcatgac cgccgcccgc tggttctgtc gccagaagct
    29581 gcacaggaat ggatgcggca agagattggc ggtaaagaag catcagaaat tgctaccaac
    29641 ggctgtgtgc cagcaaacca gttcacctgg cacccggtat cgcgcgcggt aggtaatgtc
    29701 aaaaaccagg gcgcggagtt aattcaacct gtttgttgac atcctccacg ccctgaagga
    29761 cgaggctccc tgctacgttc aggctgtcgc ctgaatcatt tcggtgggtt cctgcttcaa
    29821 cgggcggcct gactgcacca tctctccaca ggcaagaacg gcgtgccccg ccgctaaaat
    29881 gttacgagcg ccatttacat cggcgttcgc tgtatatcca catacctggc atctgaattt
    29941 actttgtgac aggcggtttt ctttcgctgt atgaccacag cacgcgcaac gctggcttgt
    30001 gcacgctggc ggaacagcaa acacctgacc gccacgccag agctgcttgt actcaagctg
    30061 gcggcgcatt tcataccagc cctgatccag tatcgaacgg tttaaacctg attttgcccg
    30121 gacattgcgc cccggctggc tgaccgtacc cgctgctgac tttgacatgt tgctgacctt
    30181 caaatcctca atgactatca ttgcgtggtt tttgctgacg gtcgttgtga ctttgtgaag
    30241 gtagtccctg cggatatttg cgatacagga atgcagtcgc tgtattttgc gtttctgctt
    30301 ctgccagttg ttgctgaatt tgaccttgcg gcttaact
//
LOCUS       DAJVUP010000031        29253 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.031, whole genome shotgun sequence.
ACCESSION   DAJVUP010000031 DAJVUP010000000
VERSION     DAJVUP010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29253
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.031"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..154
                     /locus_tag="OQQ75_001314"
     CDS             <1..154
                     /locus_tag="OQQ75_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2135 domain-containing protein"
                     /protein_id="HCS1975702.1"
                     /translation="NYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTL
                     VKSFDW"
     gene            429..3278
                     /gene="rcsC"
                     /locus_tag="OQQ75_001315"
     CDS             429..3278
                     /gene="rcsC"
                     /locus_tag="OQQ75_001315"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416722.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RcsC"
                     /protein_id="HCS1975703.1"
                     /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR
                     ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF
                     EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL
                     RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANR
                     LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGEPRWMQERSW
                     FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLA
                     RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN
                     MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV
                     KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV
                     TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
                     LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT
                     GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS
                     QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE
                     PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI
                     YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND
                     GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC
                     LESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES"
     gene            complement(3478..4128)
                     /gene="rcsB"
                     /locus_tag="OQQ75_001316"
     CDS             complement(3478..4128)
                     /gene="rcsB"
                     /locus_tag="OQQ75_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsB"
                     /protein_id="HCS1975704.1"
                     /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN
                     LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD
                     IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR
                     LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD"
     gene            complement(4145..6817)
                     /gene="rcsD"
                     /locus_tag="OQQ75_001317"
     CDS             complement(4145..6817)
                     /gene="rcsD"
                     /locus_tag="OQQ75_001317"
                     /EC_number="2.7.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase RcsD"
                     /protein_id="HCS1975705.1"
                     /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA
                     WLKDKSYQIVDITHAIQKRVNTWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYL
                     EKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLIST
                     LPLKDLTSGFKESTISDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTT
                     FNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGDNDNEKEGTDSVSIHFNS
                     TKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFS
                     SRSTESLPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHL
                     NLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ
                     AQRLYEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDE
                     IQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGD
                     RDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLH
                     FPFINQPQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPE
                     VEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNP
                     SNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLG
                     GDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPG
                     KQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL"
     gene            7556..8686
                     /gene="ompC"
                     /locus_tag="OQQ75_001318"
     CDS             7556..8686
                     /gene="ompC"
                     /locus_tag="OQQ75_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpC"
                     /protein_id="HCS1975706.1"
                     /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGL
                     KFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
                     LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSS
                     KRTDDQNGSYISNGVVRNYIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSL
                     GWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINSRNYDDEDILKYVDVGATY
                     YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF"
     gene            8798..9853
                     /gene="apbE"
                     /locus_tag="OQQ75_001319"
     CDS             8798..9853
                     /gene="apbE"
                     /locus_tag="OQQ75_001319"
                     /EC_number="2.7.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase ApbE"
                     /protein_id="HCS1975707.1"
                     /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT
                     FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA
                     MAEIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDEMKAKTGLQH
                     LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR
                     GINGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ
                     TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF
                     KTWMSPQFKSFLVSEKN"
     gene            9927..10979
                     /gene="ada"
                     /locus_tag="OQQ75_001320"
     CDS             9927..10979
                     /gene="ada"
                     /locus_tag="OQQ75_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HCS1975708.1"
                     /translation="MKNATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA
                     RHALRENVSFYANASEALAAGFRPCKRCQPDKANAQQHRLDKITHACRLLEQETPVTL
                     EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP
                     DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCALGRCLVAESERGICAILLGDD
                     DATLISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW
                     QALRTIPCGETVLANAIGKPKAVRAVASACAANKLAIVIPCHRVVGGDGTLSGYRWGV
                     SRKAQLLRREAENEER"
     gene            10979..11629
                     /gene="alkB"
                     /locus_tag="OQQ75_001321"
     CDS             10979..11629
                     /gene="alkB"
                     /locus_tag="OQQ75_001321"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HCS1975709.1"
                     /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS
                     PFRQMVTPGGYTMSVAMTNCGHLGWTIHRQGYLYSPIDPQTNKPWPAMPQSFHDLCQR
                     AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK
                     RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFYPLTTDCRYNLTFRQAGKKE"
     gene            11705..13348
                     /gene="yojI"
                     /locus_tag="OQQ75_001322"
     CDS             11705..13348
                     /gene="yojI"
                     /locus_tag="OQQ75_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin J25 efflux ABC transporter YojI"
                     /protein_id="HCS1975710.1"
                     /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIEMA
                     DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL
                     GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT
                     IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA
                     QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR
                     TPLLSAVGALPTLLMAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFSYQD
                     NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP
                     EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL
                     SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH
                     DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA"
     gene            13566..15212
                     /gene="mqo"
                     /locus_tag="OQQ75_001323"
     CDS             13566..15212
                     /gene="mqo"
                     /locus_tag="OQQ75_001323"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HCS1975711.1"
                     /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA
                     TLGTYLRELEPEWSMTMLERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI
                     EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL
                     QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS
                     LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL
                     QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD
                     GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML
                     SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDADKGGVLRLGTEVVSDQQGTIA
                     ALLGASPGASTAAPIMLDLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE
                     LQYTSEVLGLKYDKPQAADSTPKPQLKPQPVQKEVADIAL"
     gene            complement(15362..15850)
                     /gene="eco"
                     /locus_tag="OQQ75_001324"
     CDS             complement(15362..15850)
                     /gene="eco"
                     /locus_tag="OQQ75_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease inhibitor ecotin"
                     /protein_id="HCS1975712.1"
                     /translation="MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQV
                     IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLESKTLEGWGYDYYVFDKVSSPVS
                     TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAE
                     VR"
     gene            16258..16752
                     /gene="napF"
                     /locus_tag="OQQ75_001325"
     CDS             16258..16752
                     /gene="napF"
                     /locus_tag="OQQ75_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HCS1975713.1"
                     /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI
                     NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDAC
                     LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY
                     LHAH"
     gene            16742..17005
                     /gene="napD"
                     /locus_tag="OQQ75_001326"
     CDS             16742..17005
                     /gene="napD"
                     /locus_tag="OQQ75_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HCS1975714.1"
                     /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL
                     IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP"
     gene            17002..19488
                     /gene="napA"
                     /locus_tag="OQQ75_001327"
     CDS             17002..19488
                     /gene="napA"
                     /locus_tag="OQQ75_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HCS1975715.1"
                     /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA
                     PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL
                     RMKNGKYDKEGEFTLITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS
                     KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE
                     MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII
                     QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA
                     EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL
                     LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS
                     GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS
                     DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS
                     RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY
                     LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE
                     GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA
                     FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA
                     QLVNKLTQDATDPLSKETDFKKCAVKLEKV"
     gene            19495..20190
                     /gene="napG"
                     /locus_tag="OQQ75_001328"
     CDS             19495..20190
                     /gene="napG"
                     /locus_tag="OQQ75_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HCS1975716.1"
                     /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV
                     RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC
                     EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA
                     ITLELERNTRTGKHARFLPTVHRDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH
                     YRFGWLEGNNGKS"
     gene            20177..21040
                     /gene="napH"
                     /locus_tag="OQQ75_001329"
     CDS             20177..21040
                     /gene="napH"
                     /locus_tag="OQQ75_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HCS1975717.1"
                     /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW
                     FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR
                     LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILLGSALTGTLIWEWI
                     NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV
                     AATDRQKCNRCMDCFHVCPEPRVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT
                     ITTRWSSGAKS"
     gene            21037..21486
                     /gene="napB"
                     /locus_tag="OQQ75_001330"
     CDS             21037..21486
                     /gene="napB"
                     /locus_tag="OQQ75_001330"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HCS1975718.1"
                     /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE
                     GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP
                     THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK"
     gene            21496..22098
                     /gene="napC"
                     /locus_tag="OQQ75_001331"
     CDS             21496..22098
                     /gene="napC"
                     /locus_tag="OQQ75_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type protein NapC"
                     /protein_id="HCS1975719.1"
                     /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF
                     NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR
                     KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA
                     QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF"
     gene            22117..22734
                     /gene="ccmA"
                     /locus_tag="OQQ75_001332"
     CDS             22117..22734
                     /gene="ccmA"
                     /locus_tag="OQQ75_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HCS1975720.1"
                     /translation="MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLL
                     RLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDG
                     DTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVN
                     GVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA"
     gene            22731..23393
                     /gene="ccmB"
                     /locus_tag="OQQ75_001333"
     CDS             22731..23393
                     /gene="ccmB"
                     /locus_tag="OQQ75_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HCS1975721.1"
                     /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ
                     LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM
                     VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL
                     LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS
                     IQ"
     gene            23435..24172
                     /gene="ccmC"
                     /locus_tag="OQQ75_001334"
     CDS             23435..24172
                     /gene="ccmC"
                     /locus_tag="OQQ75_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmC"
                     /protein_id="HCS1975722.1"
                     /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA
                     PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV
                     FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG
                     ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL
                     MRMRNLILLMEKRRPWVSELILKRGRK"
     gene            24169..24378
                     /gene="ccmD"
                     /locus_tag="OQQ75_001335"
     CDS             24169..24378
                     /gene="ccmD"
                     /locus_tag="OQQ75_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HCS1975723.1"
                     /translation="MTLAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR
                     AILCGVEQQRAREARLRAAQQQEAA"
     gene            24375..24854
                     /gene="ccmE"
                     /locus_tag="OQQ75_001336"
     CDS             24375..24854
                     /gene="ccmE"
                     /locus_tag="OQQ75_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HCS1975724.1"
                     /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL
                     YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL
                     FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS"
     gene            24851..26794
                     /gene="ccmF"
                     /locus_tag="OQQ75_001337"
     CDS             24851..26794
                     /gene="ccmF"
                     /locus_tag="OQQ75_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis heme lyase CcmF"
                     /protein_id="HCS1975725.1"
                     /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW
                     LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL
                     MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD
                     LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF
                     LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT
                     LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG
                     HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN
                     TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA
                     MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS
                     VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTREGKPETVLYAEKRY
                     YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG
                     LLCLFDPRYRKRVSPQKTAPEAV"
     gene            26791..27348
                     /gene="dsbE"
                     /locus_tag="OQQ75_001338"
     CDS             26791..27348
                     /gene="dsbE"
                     /locus_tag="OQQ75_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbE"
                     /protein_id="HCS1975726.1"
                     /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP
                     VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG
                     MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA
                     GDLNPRVWEEEIKPLWEKYSKEAAQ"
     gene            27345..28397
                     /gene="ccmH"
                     /locus_tag="OQQ75_001339"
     CDS             27345..28397
                     /gene="ccmH"
                     /locus_tag="OQQ75_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis thiol:disulfide
                     oxidoreductase CcmH"
                     /protein_id="HCS1975727.1"
                     /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP
                     KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV
                     LLWVLPVVAIGIGGWVIYARSRRRVRVVPDAFPEQSVPEGKRAGYIVYLPGIVVALIV
                     AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN
                     PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR
                     LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLSANDTRRAVIE
                     RSIAQAMQHLSPQESK"
     gene            complement(28432..29079)
                     /gene="narP"
                     /locus_tag="OQQ75_001340"
     CDS             complement(28432..29079)
                     /gene="narP"
                     /locus_tag="OQQ75_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite response regulator protein NarP"
                     /protein_id="HCS1975728.1"
                     /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPSFEVVAEAGDGASA
                     IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG
                     ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD
                     VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ"
BASE COUNT         6680 a         7221 c         8104 g         7248 t
ORIGIN      
        1 caactactat ggtgggcgca gcgaaacgga attaaccacc gcccaactga cgctgatcac
       61 cgatgaagga tcggtcaatg agaaacagga aacatttatt gtaccgatgc gtaatgctgg
      121 cgagctgacg ctggtgaaaa gttttgactg gtgatccatc ccttcacaca acctggctct
      181 ctcttttttc agataagact gctgggcgat ctgccgacgc caggatataa ccattaacaa
      241 gcgtcggcag attggtcatt tcttattttt cgtactgaga actgtccatc tactccggct
      301 ttcctggtta aggcaatggt ttctaagcga tacgcattat tgcaataatg acagaacatt
      361 gcggtaacac gcttttaccg ctaccttaac cacactccat cggtcacctg aggcggagct
      421 tcgccccttt gaaatacctt gcttcttttc gtacaaccct gaaagcctcg cgctacatgt
      481 tcagagcatt ggcgttagtg ctctggctgt tgattgcttt ttcatccgtt ttttacatcg
      541 ttaatgcgtt acatcagcga gaatcggaaa ttcgtcagga atttaatctg agttccgatc
      601 aggctcagcg ctttattcaa cgcacctctg atgtgatgaa agagctgaag tacatcgccg
      661 aaaatcgctt atcggcagaa aacggtgtgc tttccccgcg tggacgagaa acgcaggcgg
      721 atgtgcctgc gtttgaaccg ctgtttgccg actccgattg ttccgcaatg agtaacacct
      781 ggcgaggttc tctggagtca ttggcgtggt ttatgcgcta ctggcgcgat aatttttctg
      841 cggcttacga tctaaaccgg gtatttttaa tcggcagcga taacctctgc atggccaatt
      901 tcggtctgcg tgatatgcca gtggaacgcg ataccgcgtt gaaagctttg catgaacgca
      961 tcaataaata tcgaaatgca ccacaagatg atagcggcag taacctctac tggatcagcg
     1021 aaggtccgcg ccctggcgtc gggtattttt acgcgttgac gccagtttat ctggcgaacc
     1081 ggttgcaggc gcttttgggg gtcgagcaga ccatccggat ggagaacttt ttcttaccgg
     1141 gtacgttgcc gatgggggtt accattcttg atgaaaatgg tcataccctg atttcgctta
     1201 ccggaccaga aagtaaaatt aagggcgagc ctcgctggat gcaggaacgc tcctggtttg
     1261 gctatacgga agggttccgg gagctggtgc tgaagaaaaa tctgccaccc tcatcgctaa
     1321 gcatcgtgta ttcggtgccg gttgataagg tgctggaacg cattcgcatg ttgatcctta
     1381 acgcaatttt gctgaatgtg cttgccggag ctgcattgtt tactctcgca cggatgtacg
     1441 agcgacgtat tttcattccg gcggaaagcg acgccctgcg actggaagaa catgagcagt
     1501 tcaatcgcaa gattgtcgcc tccgcgccag tgggtatctg cattttgcgt accgctgatg
     1561 gcgtcaatat tttaagtaac gaactggcgc atacctatct caatatgctt acgcatgagg
     1621 accgccaacg actgacgcaa attatctgtg ggcagcaggt caattttgtt gatgtcctga
     1681 ccagcaacaa taccaatctg caaatcagct tcgtccattc gcgctatcgt aatgaaaacg
     1741 tggccatttg tgtgctggtg gatgtttctt cgcgcgtgaa gatggaagag tcgttgcagg
     1801 agatggcaca agcagcggaa caggcgagcc agtcaaaatc gatgttcctt gccaccgtca
     1861 gtcatgagct gcgaacgccg ctgtatggca ttatcggtaa cctggatctg ttgcaaacca
     1921 aagagttacc gaaaggcgtc gatcggctgg tgacggcaat gaacaactct tccagcctgt
     1981 tgttgaaaat tatcagcgat attctcgatt tctcgaagat tgaatcggaa cagttgaaga
     2041 tcgaaccgcg tgagttttca ccgcgtgaag tgatgaacca catcaccgcc aactatttac
     2101 cgctggtggt acgcaagcag ttaggcttgt actgctttat tgaaccggat gtgccagtgg
     2161 ccttaaatgg cgacccgatg cgtttacagc aggtcatctc caacctgttg agtaacgcca
     2221 taaaattcac cgataccggc tgtatagttt tgcatgtccg cgctgatggc gattatctct
     2281 ctatccgtgt tcgcgatacc ggcgtgggga ttccggcgaa agaagtggtg cgcttgtttg
     2341 atcccttctt ccaggtcgga acgggcgtac agcgaaactt ccaggggacc ggtctgggtc
     2401 tggcgatttg tgaaaaactg atcagcatga tggacggcga tatctcggta gattcagaac
     2461 cgggaatggg cagccagttt accgtgcgta ttccgttgta cggcgctcag tacccgcaga
     2521 aaaaaggcgt ggaagggttg agtggtaaac gctgctggct ggcggtccgc aatgcgtcgc
     2581 tctgtcagtt cctggaaact agtttgcagc gcagcggcat cgtcgttaca acatacgaag
     2641 ggcaggaacc gactcccgaa gatgtgttaa ttactgacga ggtagtgagt aaaaaatggc
     2701 agggtagagc ggtagtgacc ttctgtcgtc gccatattgg tattccgctg gagaaagcgc
     2761 caggggagtg ggtacacagt gtggctgccc cgcatgagct accggcattg ttggcgcgta
     2821 tttatttgat cgagatggag agcgacgatc ctgctaacgc tctgccgtcg acggacaaag
     2881 cggtcagcga taatgacgat atgatgattc tggtcgtgga tgatcatccg attaaccgac
     2941 gtctgctggc agatcagttg ggatcgttgg gctatcaatg taaaaccgcg aatgatggtg
     3001 tcgatgcgct taatgtactt agcaagaatc atattgatat cgtgcttagc gacgtcaaca
     3061 tgccaaatat ggatggttac cgcttgacgc aacgcattcg tcagttggga ctgacgttgc
     3121 cggtaatcgg agtaactgct aatgcgttgg ctgaagagaa gcagcggtgt ctggagtccg
     3181 gtatggacag ctgcctgtcg aagccggtaa cgctggatgt gataaaacag acgctgacgg
     3241 tatatgccga gagggtcagg aaatcgcggg aatcgtagga cggataaggt gtttatgtcg
     3301 catctggcat tcagtgcaaa tgccagatgc gacgctgacg cgtcttatct ggcctacttt
     3361 gatgtaatct gttgaaataa tgggaatcgt aggacgcata aggcgtttac gccgcatccg
     3421 gcaatcggtg caaatgccag ataagacact aacgcgtctt atctggccta caggtgatta
     3481 gtctttatct gccggactta acgtcactga agagagataa ttcagcaggg cgatatcgtt
     3541 ctcgacaccc agcttcatca tcgcagattt cttctggcta ctgatggttt taatactgcg
     3601 gttcagcttt ttagcgatct cggtcaccaa gaagccttcc gcaaacaggc gcagaacttc
     3661 actctctttt ggcgagagac gcttgtcacc gtaaccacca gcactgattt tttccaacag
     3721 gcgagaaacg ctttccgggg taaatttctt ccctttctgc agcgcggcga gagctttcgg
     3781 cagatcggtc ggtgcacctt gtttcagcac gatcccttcg atatccagat ccaataccgc
     3841 actaagaatc gccgggttgt tgttcatagt cagaacaatg atcgacaggc ttgggaaatg
     3901 gcgcttgatg tacttgatta aggtaatgcc atcgccgtac ttatcgccag gcatggagag
     3961 atcggtaatc aacacatgcg catccagttt cggcaggttg ttgatcagtg ctgtagagtc
     4021 ttcaaattcg ccgacaacat tcacccactc aatttgctca agtgatttgc gaataccgaa
     4081 caagactatc ggatggtcat cggcaataat tacgttcata ttgttcatgt aataggctac
     4141 cttgctacag caagctcttg acataactgt caatgtcgct gatgtatttt tctattcctg
     4201 gaacatcctt ctcacgaatc agatgttcca gcgtttcaca taactgcttg ccgggtacca
     4261 gatttagcat ggcaaatacg cctttaagac gatgagccgt ttgggctaac gcagcaaagt
     4321 cactggttgc tgcttcagta tacagcctct taacatcatc cggtactgtg tctacaaaga
     4381 gcgcataata gccgctggca tggagttgcg cattttcatc tccgcccaga ggcgattctg
     4441 tcacctcttc ctgcgccagt tgcacttcaa ttaattgtaa gaccgcttcc tgcatagcgt
     4501 tgctcatatt gaagttgacg cacaattgac caggcccaat ttcccgtacg ccagactcat
     4561 catcgcttaa aagcaagcca gaggcagtaa gattagacgg attatccgtt aaaaagatat
     4621 cataatcttg actaattaat ctttcatcgg gtgtgataca ggttgcaccc caattttcta
     4681 actggcgagt gacaatattc cgaatttctg ccgaagtaac atccaccatt acgcagacat
     4741 catccagtaa acgctcttct tcctcttcaa cttccgggtc agcggcgagc attttgatat
     4801 gcacagagta gcgtgtacca agcccatccc gcgttttgat gtttaaatga ccgcccagtt
     4861 tacgcgccag ttgatcgctc agccagaatg ccagcgggtc cgccttgcca tagcgatcgt
     4921 tttggggctg gttgataaac gggaagtgca aattatccat ttcatgaata cttacgcctt
     4981 ctcccgtgtc cagaatgcgg aatgtcaggc ggtcttcaga ggactcatcc tgatcaacct
     5041 caagggtgat ttttcccaat tgcgttgagg tcacggcata ttgcatcagt agcagcaaaa
     5101 tacgtcgtaa ggcatcgcga tcgccgcggc gcatatcgtg tgctttcaga tgattgttaa
     5161 tcagcagttg cagaccttta cgcttgatgg caggcaacac tgaaggcaca acttcatcaa
     5221 ttaaatcctg cacggagaac agcaccgtct cacttttcca gctatcgtcc gcaagcatgt
     5281 tcgctaactg tatttcatcg accagccgca ccagcacatc tgcctgattc gccagttgtt
     5341 tgctttccgg ggcgttgagt ttagccgcgc tctccgccag ggactgtgcg ggttctttca
     5401 gcgcatcgcc aatgtttttc ataaaggtca tccgcccctg ctggtttttc tcatacagac
     5461 gctgcgcctg cttgagtttc ttgtttacca gcacttcgcg atcctgatcg cgaataatga
     5521 aaatttgtgt gcgcggcgcg acctggctgc ggaacatgcg gatctcatac agctcgttat
     5581 tgatcgtcgc ctgaataatc ccctgatgct gttccgccat ggtggtgatg ttttgcagat
     5641 tcaaatgcgg cagcaaatga tcggcaattt tgttacttat gacagtgcgg ttcgattcct
     5701 gatcgtgaac cagcaggccg agcggcagca gtgagactat ctcttcatta attgcccgta
     5761 aaatgcgcaa ttcgttattg accgccgtgc tgggtagact ttctgtactg cggctggaga
     5821 aatggcggaa tgtggtatag ccaaataacg ccagcgccag caaaccgatg ttcagcagca
     5881 gtggcagcag aatgttttgc aacgtatcca gcaataaggt gccataagga acctgccaga
     5941 ccaggcgcat atcggtagag ttgagtgccg aggagatttc aatcttcgta ctgttaaagt
     6001 ggatactgac gctatccgtc ccttctttct cattatcatt gtctcccgtt gccgtcgcgt
     6061 ctggctcaag gcggaaactg tccagcggca tacccggtgg gatcaaatca ttaatcggta
     6121 gatcaaaagc tacgaccgtt gccagatgtc ccggctggtt gaacgtggta cgcaaggtaa
     6181 agtaatgacc gttctgccag gccaggcggc gcatgttaga aaaactttcg cgttcatcga
     6241 gggcgttggc ctgttgcaac atctctgcac gacgtgaatc aacaatgtcg ctgatggtcg
     6301 attctttaaa tccggaggtg agatctttga ggggcagggt tgagatcagc accagactgt
     6361 tatcctgacc attcaggtaa tacatcgacc acggtacatt ttctgcgccc cacaatgtgt
     6421 ccagataggt ggacatccgc tgagtcatct caagcgttga gttgtcgtga gagccaaaga
     6481 ttaacgcttc cgttttgcgg cgcggtttct ccagatagta gacatcctgt ttcaggcgcg
     6541 tctcttgtaa accttcgccg gaggaggggg aggttgtcgc ggcaatgttg tcgtagatct
     6601 gccaggtcac gtaacgccag gtattgacgc gcttttggat agcgtgggta atgtcgacaa
     6661 tctggtaact tttatctttc agccatgcgt taacggcgct ttgtaccatt acacccatcg
     6721 tcaccagtaa cacaatgatc aacagtaaaa agaagcgggt aatgctcccc ggtaggagtg
     6781 aaaagcgggt cgtggccgtt gtctctttct gacgcattcg tgtttatgac ctgttaaaac
     6841 ttcgcgaagt gatagggcag tataaagggt acagtgtgaa attccagact cttacctgat
     6901 tgatgattct ctattctccc gtgatattta tcatcctgca ttgggggaaa tagatgtaca
     6961 agcgccattt tgctgtacaa ataacctaca aaaagcccaa cgaaattaat tgcaaataaa
     7021 cgatgattgc tggaaattat gctgatgtta attatttgtg aaatagttaa caagcgttat
     7081 agtttttctg tggtagcaca gaataatgaa aagtgtgtaa agaagggtaa aaaaaaccgg
     7141 atgcgaggca tccggttgaa ataggggtaa acagacattc agaaatgaat gacggtaata
     7201 aataaagtta atgatgatag cgggagttat tctagttgcg agtgaaggtt ttgttttgac
     7261 attcagtgct gtcaaatact taagaataag ttattgattt taaccttgaa ttattattgc
     7321 ttgatgttag gtgcttattt cgccattcca caataatctt aaaaagttcc cttgtattta
     7381 cattttgaaa catctatagc gataaatgaa acatcttaaa agttttagta tcatattcgt
     7441 gttggattat tctgcatttt tggggagaat ggacttgccg actgattaat gagggttaat
     7501 cagtatgcag tggcataaaa aagcaaataa aggcatataa cagagggtta ataacatgaa
     7561 agttaaagta ctgtccctcc tggtcccagc tctgctggta gcaggcgcag caaacgctgc
     7621 tgaagtttac aacaaagacg gcaacaaatt agatctgtac ggtaaagtag acggcttgca
     7681 ctatttctct gacaacaagt cagaagacgg cgaccagacc tatgtacgtc ttggtttcaa
     7741 aggcgaaact caggttactg accagctgac cggttacggc cagtgggaat atcagatcca
     7801 gggcaatacc tctgaagaca acaaagaaaa ctcctggacc cgtgtggcat tcgcaggtct
     7861 gaaattccag gatgtaggtt ctttcgacta cggtcgtaac tacggcgttg tttacgacgt
     7921 aacttcctgg accgacgtac tgccagaatt cggtggcgac acctacggtt ctgacaactt
     7981 catgcagcag cgtggtaacg gcttcgcgac ctaccgtaac accgacttct tcggtctggt
     8041 tgacggtctg aactttgctg ttcagtacca gggcaaaaac ggtagcgtaa gcggcgaagg
     8101 catgaccaac aacggtcgtg gcgctctgcg tcagaacggc gacggtgtcg gcggttctat
     8161 cacttatgat tacgaaggct tcggtatcgg tgctgcagtt tccagctcca aacgtactga
     8221 tgatcaaaat ggtagctaca tcagcaatgg tgtagttcgt aactacatcg gtactggcga
     8281 ccgtgctgaa acctacactg gtggtctgaa atacgacgct aacaacatct acctggctgc
     8341 tcagtacacc cagacctaca acgcaactcg cgtaggttcc ctgggttggg cgaacaaagc
     8401 acagaacttc gaagctgttg ctcagtacca gttcgacttc ggtctgcgtc cgtctgtagc
     8461 atacctgcag tctaaaggta aaaacctggg tgtcatcaat agtcgtaact acgacgacga
     8521 agatatcctg aaatatgttg atgttggcgc gacctactac ttcaacaaaa acatgtccac
     8581 ctatgttgac tacaaaatca acctgctgga cgacaaccag ttcactcgtg acgctggcat
     8641 caacactgat aacatcgtag ctctgggtct ggtttaccag ttctaatctc gattgatatc
     8701 gaacaaaggg cctgcgggcc ctttgttcat tgttttcagc gtacaaactc agttttttgg
     8761 tgtactcttg cgaccgttcg catgaggata atcacgtatg gaaataagct ttacccgcgt
     8821 ggcactgctg gctgccgcgc tcttctttgt tggttgcgat caaaaaccac aacccgccaa
     8881 aacccacgct actgaagtta ccgttcttga aggcaaaacc atgggtacct tctggcgtgc
     8941 cagcatcccg ggcattgatg ccaaacgcag tgccgaactt aaagaaaaga ttcagaccca
     9001 gctggacgcc gacgatcagc tgctttcgac ctataaaaaa gattccgcgc tgatgcgctt
     9061 taacgactcg caaagtttgt cgccgtggcc agtaagtgaa gcgatggccg aaatcgtcac
     9121 tacctcgctg cgcattggcg cgaagaccga tggtgcgatg gatattaccg tcgggccgct
     9181 ggtaaatctg tggggctttg gcccggaaca acagccggtt caaattccga gccaggaaca
     9241 gatcgacgag atgaaagcca aaactggttt acagcacctt acggtcatta atcagtcgca
     9301 tcagcaatat ctgcaaaaag acctgccgga tttatatgtc gatctctcta ccgtcggcga
     9361 aggttatgcg gcggatcact tggcacgctt gatggagcag gaagggattt cccgctatct
     9421 ggtgtcggtg ggcggcgcgc tgaacagccg tggtatcaac ggtgaaggcc tgccgtggcg
     9481 ggtagcgatt caaaaaccaa ccgataaaga aaacgcagtt caggctgtgg tggatatcaa
     9541 cggtcatggg attagcacct ctggcagcta ccgtaactat tacgaactgg acggcaaacg
     9601 tctttcccat gttatcgatc cgcaaaccgg gcgtcccatc gaacacaatc tggtatccgt
     9661 gacggtgatt gctccgacgg cgctggaagc cgatgcctgg gatactggct tgatggtact
     9721 cgggccggag aaagccaaag aggttgttcg ccgggaaggg ctggcggttt atatgatcac
     9781 caaagaaggc gatagcttta aaacctggat gtcaccacag tttaaaagct tccttgtcag
     9841 cgaaaaaaat taaagcgcaa gattgttggt ttttgcgtga tggtgaccgg gcagactaaa
     9901 ggctatcctt aaccagggag ctgattatga aaaacgccac atgcttaact gacgatcaac
     9961 gctggcaatc tgtcttagcc cgcgacccga atgccgacgg cgaattcgtt ttcgccgtgc
    10021 gcaccacagg catcttttgc cgtccgtctt gccgcgccag acatgccttg cgggaaaatg
    10081 tctccttcta cgcaaatgcc agcgaggcac tcgccgccgg atttcgcccc tgcaaacgct
    10141 gccaacctga taaagccaat gcccagcaac atcggttgga taaaatcacc cacgcgtgtc
    10201 gactgctgga acaggaaacg cctgtaacgt tggaagcctt agccgaccag gtggcgatga
    10261 gtccatttca tctacatcgg ttgtttaaag cgactaccgg aatgacgcct aaagcctggc
    10321 aacaggcctg gcgcgctcgc cgtttgcgcg aatcgctggc gaaaggggag agcgtgacga
    10381 cgtctattct taacgccgga ttccccgaca gcagcagtta ctaccgcaaa gccgatgaaa
    10441 cgctgggcat gacggctaaa caattccgtc acggtggcga aaatctggcg gtgcgttacg
    10501 cgctggctga ttgtgcgctg ggtcgttgcc tggtggcaga aagcgagcgg gggatttgcg
    10561 cgatattgct gggcgatgat gacgcgacat taatcagcga gttgcagcag atgtttcccg
    10621 ctgccgacaa cgcgcctgcc gatctgacgt ttcagcaaca tgtgcgtgaa gtgatcgcca
    10681 gcctcaatca acgcgatacg ccgctgacgt taccgctgga tattcgcggc actgcttttc
    10741 agcaacaagt ctggcaggca ctgcgcacga taccttgcgg tgaaaccgta ctggctaacg
    10801 ccatcggcaa accgaaagcg gtacgggccg ttgccagcgc ctgtgccgcc aacaagctgg
    10861 ctatcgtaat accctgtcat cgagtggtcg gtggtgatgg cacactttcc ggttaccgct
    10921 ggggcgtgtc tcgtaaagcg caactgctgc gccgcgaagc tgaaaatgag gagaggtaat
    10981 gttggatctg tttgccgatg ctgaaccgtg gcaagagcca ctggcggctg gtgcggtaat
    11041 tttacggcgt tttgctttta acgctgcgga gcaactgatc cgcgatatta atgacgttgc
    11101 cagccagtcg ccgtttcgcc agatggtcac ccccggggga tataccatgt cggtggcgat
    11161 gaccaactgt gggcatctgg gctggacgat ccatcggcaa ggttatctct attcgcccat
    11221 tgatccgcaa acaaataaac cgtggcccgc catgccacaa agctttcatg atttatgtca
    11281 acgtgcggct acggcggcgg gctatccaga tttccagcca gatgcttgtc ttatcaaccg
    11341 ctacgctcct ggcgcgaaac tgtcgctgca tcaggataaa gacgaaccgg atctgcgcgc
    11401 gccaattgtt tctgtttctc tgggcttacc cgcgattttt caatttggtg gcctgaaacg
    11461 taatgatccg ctcaaacgtt tgttgttgga acatggcgat gtggtggtat ggggcggtga
    11521 atcgcggctg ttttatcacg gtattcaacc gttgaaagcg gggttttatc cactcaccac
    11581 cgactgccgc tacaacctga cattccgtca ggcaggtaaa aaagaataaa aataagaatt
    11641 attattgctg tgcgcgcgaa gatgtttaaa ctgcgggctg taattcattg tccgggtttt
    11701 ctgcatggaa cttcttgtac ttgtctggcg gcagtatcgc tggccattta tcagtgtgat
    11761 ggcgctaagc ctcgccagtg cggcattagg cattggctta attgctttta tcaatcagcg
    11821 ccttatcgaa atggcggata ccagtctgct ggtattgccg gagtttctgg gattattgct
    11881 gctgttgatg gcagtcactc tcggatcgca actggcgctc accactttgg ggcatcactt
    11941 cgtttaccga ctgcgtagtg aatttatcaa gcggattctg gatacccacg tcgagcgcat
    12001 tgaacaactc ggtagcgcct cgttgttggc gggattaacc agcgatgtgc gcaatatcac
    12061 cattgctttt gtgcgtcttc cggaactggt gcaggggatc attctcacta tcggttccgc
    12121 ggcgtatctg tggatgctgt cgggcaaaat gttgctggta acggctatct ggatggcgat
    12181 caccatctgg ggtggttttg tactggtggc gcgggtgtac aaacatatgg cgaccctacg
    12241 tgaaaccgaa gacaagctgt acacggattt tcaaactgta cttgaagggc gcaaagagct
    12301 gactctgaac cgggaacgcg ccgagtatgt gtttaacaac ctctacatcc ccgatgcgca
    12361 agagtatcgc catcatatta ttcgcgcaga caccttccat cttagtgccg tgaactggtc
    12421 aaacatcatg atgctgggcg ctatcggcct ggtgttctgg atggcgaaca gtctcggttg
    12481 ggctgatacc aacgttgctg cgacctattc gttgacgctt ttattcctgc gtacgccgct
    12541 gctttcggcg gttggcgcat tgccgacgct gctgatggcg caggtggcgt ttaacaagct
    12601 gaacaaattc gcgctcgcgc ctttcaaagc agagtttccg cgcccgcagg cgtttcccaa
    12661 ctggcaaacg ctggagctgc gtaatgtgac gtttagctat caggataacg cgttttccgt
    12721 tggtccgatt aatctcacca tcaaacgtgg cgagctactg tttctgattg gtggtaacgg
    12781 tagtggaaaa tcgacgctgg cgatgttgtt gacgggcttg tatcagccac aaagcggcga
    12841 aatcttgctg gatggcaaac ctgtcagcgg cgaacaaccg gaagattatc gcaaactgtt
    12901 ttcggcagtg tttaccgatg tctggctttt tgatcaactg ctggggccgg agggtaaacc
    12961 cgctaacccg caactggttg agaagtggct ggcgcagctg aaaatggctc ataagcttga
    13021 gttaagcaac gggcgtattg ttaacctgaa gttatcaaaa gggcagaaaa aacgcgtggc
    13081 gctgttgctg gcgctggcag aagaacgcga tattatcctg ctggatgaat gggcggcgga
    13141 tcaggatcca cacttccgtc gtgagtttta tcaggtgttg ctgccgctga tgcaggagat
    13201 gggtaaaact attttcgcta tcagtcatga tgatcattac tttatccacg ccgaccgcct
    13261 gctggaaatg cgcaatgggc aacttagcga gctgacgggc gaagagcgcg atgccgcttc
    13321 gcgtgatgcc gttgcccgga cggcataata ttacgacgct gacctggcgg actgctgccg
    13381 tcaggtcaat atgctaaaaa tcccttcatt tctaataacc ctataattaa tcaacgaaat
    13441 tataatgttt ctaaaattag aatataattt ataaacatta tttaaatgtt gttacttaag
    13501 tgttaccttt gatgccgcgc aaatctcacc tgcaataaag cgactaaaag taaggcatta
    13561 acaagatgaa aaaagtgact gccatgctct tctcgatggc cgtggggctt aatgccgttt
    13621 cgatggcggc aaaagcgaaa gcgtccgagg agcaggaaac tgatgtactg ttgattggcg
    13681 gcggcattat gagcgccacg ttggggacct atttacgcga gctggagcct gaatggtcga
    13741 tgaccatgct ggagcgcctg gagggtgtcg cgcaggagag ttcgaacggc tggaataacg
    13801 ccggaaccgg gcattctgca ctgatggaac tgaactacac cccgcaaaac gccgatggca
    13861 gtatcagtat tgaaaaagca gtcgccatta acgaagcatt tcagatttcc cgccagttct
    13921 gggcgcacca ggtcgagcgc ggcgtgctgc gtactccgcg ttcatttatc aataccgttc
    13981 cgcatatgag ctttgtctgg ggcgaggata acgttaattt cctgcgcgcc cgttacgccg
    14041 cgttgcaaca aagctcgctg tttcgcggta tgcgttactc tgaagatcac gcgcagatca
    14101 aagagtgggc accgttagtg atggaagggc gcgatccgca acagaaagtg gcagccacgc
    14161 gtacggaaat tggtaccgat gtgaactacg gcgagatcac ccgccagtta attgcttcct
    14221 tgcagaagaa atctaacttc tcgctgcaac tcagcagcga agtccgcgcc ctaaagcgta
    14281 atgacgataa cacctggacc gttaccgttg ccgatctgaa aaatggcact gcacagaaca
    14341 ttcgtgccaa atttgtcttt atcggcgcgg gcggtgcggc gctgaagctg ttacaggaat
    14401 cggggattcc ggaagcgaaa gactacgccg gtttcccggt gggcggacag ttccttgttt
    14461 cggaaaaccc ggacgtggtt aatcaccatc tggcgaaggt ttacggtaaa gcatccgttg
    14521 gcgcaccacc gatgtcggtt ccgcatatcg atacccgcgt tctggacggt aaacgcgtag
    14581 tgctgtttgg gccatttgcc accttctcaa ccaaattcct caaaaacggt tcattgtggg
    14641 atctgatgag ttccaccacc acctctaacg tgatgccgat gatgcacgtc gggctggata
    14701 atttcgatct ggtgaaatat ctggtgagtc aggtgatgtt gagtgaagag gatcgttttg
    14761 aagcgttgaa agagtactat ccgcaggcga aaaaagagga ctggcgtttg tggcaagcgg
    14821 ggcagcgtgt gcagattatc aagcgtgatg ccgataaagg tggtgtactg cgtctgggta
    14881 ctgaagtggt cagtgaccag caagggacca ttgccgcgct cctgggagca tcgccagggg
    14941 cgtcaaccgc cgcgccgatt atgttggatc tgctggaaaa agtatttggc gatcgcgttt
    15001 ccagcccgca atggcaggct acgttgaaag cgatcgttcc gtcttatgga cgcaagctga
    15061 acggtgatgt agcggcaaca gaacgcgagt tgcagtacac cagcgaagtg ctggggctga
    15121 aatacgacaa gccgcaggca gcagatagta cgccaaaacc gcagttgaaa ccgcaacccg
    15181 ttcaaaaaga agtggcggat attgcgttgt aatgatgtgc cacatccggc atggtatgcc
    15241 ggatgtggcg tatactgata agacgcgcca gcgtcgcatc aggcaaccgg ctcgggcgtt
    15301 agatgttgga tgcggcgtaa ccgccttatc caaccaacgg ggtgccgtac ttcacaacag
    15361 tttagcgaac ttctgcgttg tcaattttct cttccgcctt ccagacgcgg tatttcacat
    15421 ctacattgtc tggcgtatac accacgatcg gcagcttgct gttgtaacgc agcattccag
    15481 catcgcccag atacgcggtg acaaatttct tctctttctt gccatccggg caggccatca
    15541 tcgtggaaac cggcgagcta actttatcaa agacataata atcatagccc cagccttcca
    15601 gcgttttgct ttccagcttc ccgccgagac gatgcaaatt gcaatcgact tccagcgtct
    15661 gaccgattaa cagttctact ttcagggtag attcatcttc ttgcggggtt aactgaatca
    15721 cctgacgctt catccctttt tcagcttgtg gataaggcgc gattttttcc agtggctgga
    15781 cgctttctgc cgcccaggcg gaagtggtag cgaaagcggc aaacaatact gcaggtagaa
    15841 tggtcttcat ttttttgctt tccttcttca tttataggtt ttcaccgatg atgtcgctga
    15901 aggttaacat attcataaga tttattaatt tgctttatga ataacttaaa gaatattcag
    15961 acaattttac ctgctctttt agtgttaaat tctgatgaga gaacaaacca gcagaaatat
    16021 ctctggtgaa ttaatcgcta tataaatatg tttataacca tttgaaatgt gagcaaaagc
    16081 ccgtttttgc cacgcttccc gccactcttt tgatcctgct acaggtttta ccccgatcgg
    16141 ggtatgcatc tttgacacat cctttaatat cttagcggtt ataaaaatgg cttattaatt
    16201 atgcggttta tttggtcgct ctcaattttc agagcgcgtt aatgatggaa ggtcaatgtg
    16261 aagattgatg catcccgtcg gggcatactc actggtcgct ggcgcaaagc cagtaacggt
    16321 atccgtccgc cctggtccgg tgatgaatct cattttctga cccattgcac ccgttgcgac
    16381 gcctgtatta atgcttgtga aaacaacatt ctgcaacgcg gcgcgggcgg ctatccgagc
    16441 gttaatttca aaaataacga gtgcagcttc tgttacgctt gcgcgcaggc ttgccccgaa
    16501 tcgctatttt ctccgcgcca caccagggcc tgggatttgc agttcaccat tggggacgcg
    16561 tgcctggcgt atcagtcagt tgaatgccgc cgctgtcagg atagctgtga gccaatggca
    16621 attatctttc gcccgacgct ctccgggatc taccagccgc aacttaatag ccaactttgc
    16681 aacggatgtg gagcatgtgc agccagctgt ccggtatcag ccataactgc ggagtatctc
    16741 catgcacact aactggcaag tttgcagcct ggtcgtgcag gccaaaagcg aacgaatttc
    16801 agacatcagc acccaactga acgcctttcc cggctgtgaa gttgctgtca gcgacgcgcc
    16861 gagcggtcag ttgattgtgg tggtggaagc agaagacagc gaaacgctga tccaaaccat
    16921 tgagtcagta cgcaacgtag agggcgtgct ggcggtgtcg ctggtttatc accagcagga
    16981 agagcaaggt gaggaaacac catgaaactc agtcgtcgta gctttatgaa agctaacgcc
    17041 gttgcggccg ctgcggcggc tgccggtctc agcgtgccgg gcgttgcccg cgccgttgtt
    17101 ggtcagcagg aagccatcaa atgggataaa gcgccgtgcc gtttctgcgg tactggttgc
    17161 ggcgttctgg tcggaacgca gcagggacgt gtggtggcct gtcagggcga cccagacgca
    17221 ccggttaacc gtggcctgaa ctgcattaag ggctatttcc tgcccaagat catgtacggt
    17281 aaagaccgtt tgacgcagcc gctgctgcgt atgaaaaacg gtaaatatga caaagaaggc
    17341 gaatttaccc taatcacctg ggatcaggcc ttcgatgtga tggaagagaa attcaaaacc
    17401 gccctgaaag aaaaagggcc ggaatcgatc ggtatgttcg gttctggtca gtggactatc
    17461 tgggaaggtt atgccgcgtc caagctgttt aaagcgggct tccgttcgaa caacatcgac
    17521 ccgaacgcgc gtcactgtat ggcgtcggca gtagttggct ttatgcgtac ctttggtatg
    17581 gatgagccga tgggctgcta tgacgacatc gagcaggctg acgcgtttgt gctgtggggc
    17641 gcaaacatgg cggagatgca cccgatcctc tggtcgcgca tcactaaccg tcgtctctct
    17701 aatcagaacg tcaccgtggc ggtgctttct acctaccagc atcgtagctt cgagctggcg
    17761 gataacggca tcatctttac gccacagtct gacctggtga tcctgaacta catcgccaac
    17821 tatatcattc aaaacaatgc gataaatcag gacttcttca gcaaacacgt taacctgcgc
    17881 aaaggggcga cggacattgg ctacggttta cgtccgaccc atccgctgga aaaagcagcg
    17941 aagaatccag gttctgacgc ctccgaaccg atgagctttg aagattacaa agccttcgtt
    18001 gccgagtata cgctggaaaa aactgccgaa atgaccggcg tgccgaaaga ccagttagaa
    18061 caactggcgc agctgtatgc cgatccgaac aagaaagtca tctcctactg gacgatgggc
    18121 ttcaaccagc atactcgtgg cgtgtgggct aacaacctgg tctacaacct gcacctgctg
    18181 accggcaaaa tttcccagcc gggttgcggt ccgttctccc tgaccgggca accttctgcg
    18241 tgtggtactg cgcgtgaagt gggcaccttt gctcaccgtc tgcctgcgga catggtggtg
    18301 accaacgaga aacaccgtga tatctgcgag aagaagtgga atatcccgag cggcaccatt
    18361 ccggcgaaaa tcggtctgca cgcggtggca caagaccgtg cgctgaaaga cggcaaactg
    18421 aatgtttact ggaccatgtg taccaacaac atgcaggccg ggccgaacat caatgaagag
    18481 cgtatgccgg gctggcgcga tccgcgcaac ttcatcatcg tctccgatcc gtatccgaca
    18541 gtcagtgcgc tggccgccga cttgatcctg ccgaccgcaa tgtgggtaga gaaagagggc
    18601 gcttacggta acgccgaacg ccgtactcag ttctggcgtc aacaggtaca ggcaccgggc
    18661 gaagcgaaat cggatctctg gcagttagtc cagttctccc gccgcttcaa aactgaagaa
    18721 gtatggccgg aagatctgct ggcgaagaaa ccggaactgc gtggcaaaac gctgtacgaa
    18781 gtgctgtatg ccacaccgga agtgagcaaa ttcccggtat ccgaactggc ggaagatcag
    18841 ctgaacgatg aatcccgcga gctgggcttc tatctgcaaa aagggctgtt cgaagagtac
    18901 gcatggtttg gtcgcggtca cggtcacgat ctggcaccgt tcgatgacta ccacaaagcg
    18961 cgcggtctgc gctggccggt ggtgaacggt aaagaaacgc agtggcgtta cagcgaaggt
    19021 aacgacccgt acgtgaaagc gggcgaaggc tataagttct acggcaaacc ggatggcaaa
    19081 gcggtgatct tcgcactgcc attcgaaccg gcggcggaag caccggatga agagtacgac
    19141 ctgtggctct ctaccggacg cgttctggag cactggcaca ccggcagtat gactcgccgt
    19201 gtaccagaac tgcaccgcgc cttcccggaa gcggtcctgt ttattcaccc gctggatgcg
    19261 aaagcgcgcg atctgcgtcg tggcgacaaa gtgaaagtgg tttctcgccg tggcgaagtg
    19321 atctcgattg tcgaaacgcg cggtcgtaac cgtccgccgc agggcctggt gtacatgccg
    19381 ttcttcgacg ccgcacagct ggttaacaaa ctaacgcagg acgcgaccga tccgctctcg
    19441 aaagagacgg acttcaagaa gtgcgcagtc aaactggaga aggtgtaagc cattatgtcc
    19501 cggtcagcga aacctcaaaa tggtcgccgc cgctttctgc gcgatgttgt tcgcacagca
    19561 ggcgggctgg ctgccgtggg tgtggcgctg gggttacaac agcaaaccgc acgcgcatct
    19621 ggcgtgcggt tgcgcccgcc cggagccata aacgagaacg cctttgccag tgcctgtgtg
    19681 cgttgcggtc agtgtgttca ggcttgccct tacgacacct taaaactggc gacgctggcc
    19741 tctggtctgt cggcgggcac gccatatttt gtcgcacggg atattccttg cgaaatgtgt
    19801 gaggacattc cgtgcgccaa agtgtgcccg agcggtgcgc tggatcgtga gatcgaatcg
    19861 atcgacgacg cgcggatggg gctggcggta ctggtggacc aggaaaactg tctcaacttt
    19921 caggggctgc gctgcgatgt ttgttatcgc gaatgcccga aaattgatga ggccatcacc
    19981 ctggagctgg agcgcaacac gcgtaccggt aagcacgccc gctttctgcc gacggttcac
    20041 agagacgcct gtaccggttg cggtaagtgc gaaaaagtgt gcgtgctgga acaaccggca
    20101 atcaaggtgt taccgctgtc actggctaaa ggggagttag gtcaccatta ccgcttcggc
    20161 tggctggagg ggaacaatgg caaatcgtaa acgtgacgcc gggcgcgagg cgctggagaa
    20221 aaaaggctgg tggcgcagtc accgttggct ggtgttacgt cgcctttgtc agttcttcgt
    20281 gctggggatg tttttgagcg gtccgtggtt tggtgtgtgg atcttacacg gtaactacag
    20341 cagtagcctg ttattcgaca ccgttccgct gaccgatccg ctgatgacgc tgcaaagtct
    20401 tgccagcggt catctgcctg ccacggtggc gttgaccggt gcggtgatta tcaccgtgct
    20461 ctacgccctg gcaggaaagc gattattttg cagctgggtc tgcccgctga atccgattac
    20521 cgacttagcg aactggttac gcaggcgctt tgacctcaat cagtctgcga cgatccctcg
    20581 ccacattcgc tacgtgctgt tggtggtcat tctgctggga tcggccttaa ctggcacgct
    20641 catctgggaa tggatcaacc ccgtatctct gatggggcgc agcctggtaa tgggcttcgg
    20701 cagcggcgcg ctgcttattc tcgcgctgtt tttatttgat ctactggtcg ttgaacacgg
    20761 ctggtgcggg cacatttgtc cggttggcgc gctgtatggc gtgctgggta gcaaaggtgt
    20821 gattaccgtt gcggccaccg atcggcagaa atgtaaccgc tgtatggatt gttttcatgt
    20881 ttgcccggaa ccgcgtgtgc tacgtgcccc ggtgctggat gaacaaagcc cggtgcaggt
    20941 caccagccgc gattgcatga cgtgcggtcg ctgcgtggat gtctgttctg aggatgtatt
    21001 tacaataact acacgatgga gttcgggagc gaaatcatga aaagccatga cctgaagaaa
    21061 gcgctgtgtc aatggacggc gatgctggcc ctggtggtaa gcggcgcggt ttgggcggct
    21121 aatggcgtcg attttagcca gtcgccggaa gtatccggga cacaggaagg ggccattcgg
    21181 atgccaaaag agcaggaacg gatgccgctg aactatgtga atcagccgcc aatgatcccg
    21241 catagcgttg aaggttatca ggtaacgacc aataccaacc gctgcttgca gtgccacggt
    21301 gtcgaaagtt atcgcaccac tggcgcgccg cgcattagtc ctactcactt tatggacagc
    21361 gacggcaaag tgggcgcgga agtggctccg cgtcgttatt tctgtctgca atgtcacgta
    21421 ccgcaggccg ataccgcgcc aatcgtgggg aataccttta ccccatcaaa aggttacggg
    21481 aaataagagg ttattatggg aaattctgac cgtaagcctg gtctgattaa gcgcctgtgg
    21541 aaatggtggc gtacccccag ccgtctggcg ctggggacgc tgctgttgat cggttttgtt
    21601 ggcggcatcg tcttctgggg tggctttaac accgggatgg aaaaagccaa taccgaagag
    21661 ttctgcatta gctgccacga aatgcgcaac acggtatatc aggaatacat ggattccgtg
    21721 cactacaaca accgtagcgg cgtccgtgcg acctgtccgg attgtcacgt tccgcacgag
    21781 tttgtgccga agatgatacg caagctcaaa gcaagtaaag agctgtatgg taaaattttt
    21841 ggcgttattg acacgccgca gaaatttgaa gctcatcgtc tgacgatggc acagaatgag
    21901 tggcggcgca tgaaggacaa taactcgcag gagtgccgta actgtcacaa cttcgagtat
    21961 atggatacaa ccgcccagaa atcggttgcc gcgaagatgc atgaccaggc ggtgaaagat
    22021 gggcaaacct gtattgattg ccataaaggg atagcgcaca agctgcccga tatgcgtgaa
    22081 gtcgagccag gtttttaaca gggttattgc gtgggtatgc ttgaagccag agagttactt
    22141 tgtgagcggg atgaacgaac cttatttagt ggcttgtcat ttacgctgaa cgcaggagag
    22201 tgggtacaaa tcaccggtag caacggcgcg gggaagacaa cgcttctccg tttgctgacg
    22261 gggttgtctc gccctgacgc aggcgaggtt ctctggcaag ggcagccctt gcatcaggta
    22321 cgcgacagct accatcaaaa cctgttatgg ataggccatc agccggggat caaaacccgg
    22381 ctgacggcgt tagaaaatct gcacttttat catcgcgatg gcgataccgc acaatgtctg
    22441 gaagccctgg cgcaggccgg gcttgccgga ttcgaagata ttcctgtaaa tcagctctcg
    22501 gccgggcaac aacgccgcgt cgctttagcg cgtctgtggc tgacccgtgc cacgttatgg
    22561 atcctcgacg agccttttac cgcgattgac gttaacggcg tcgatcgtct gacccagcgt
    22621 atggcgcagc atacggagca gggggggatt gtgattctga ctacccacca gccgctcaac
    22681 gttgctgaaa gtaaaattcg ccgcatttca ctgacgcaaa cgagggccgc atgatgttct
    22741 ggcgcatttt ccgtcttgag ctgcgtgtag cgtttcgcca tagcgccgaa atcgccaacc
    22801 cgctgtggtt cttcctgatt gtaattaccc tttttccgct cagtatcggt ccggagccgc
    22861 aactgctggc gcgtattgca ccgggcatta tctgggttgc tgcgctgctt tcatccttgc
    22921 tggcgctgga acgactgttc cgtgacgatt tgcaggacgg cagtcttgaa caattgatgt
    22981 tgttgccgtt acccttgccc gccgttgtgc tggcgaaggt gatggcgcac tggatggtaa
    23041 ccggtctgcc gttactcatc ctttcgccac tggtagcaat gctactggga atggatgttt
    23101 atggctggca agtgatggcg ctgacgctgc tgctgggaac gcctacgctt ggctttctcg
    23161 gtgcaccggg tgtggcgttg acagtgggac ttaagcgcgg tggtgtgctg ctcagcatac
    23221 tggtgttacc gctgactatc ccattactca tctttgccac cgccgcgatg gacgcggctt
    23281 ccatgcattt gcccgttgac gggtatctgg caattttagg cgcgttgctg gcaggcaccg
    23341 cgacattaag tccttttgcg acggcggcag cgttacgaat cagcattcaa taacgctgga
    23401 ttactgattt ttgttcgagt ctggtatcga aactatgtgg aaaacactgc atcaactggc
    23461 gatcccacca cggctgtatc aaatctgtgg ctggtttata ccgtggctgg caattgccag
    23521 tgtggtcgtg cttaccgtcg gctggatctg gggattcggc tttgctccgg ctgattatca
    23581 gcagggaaat agctaccgca ttatctacct gcatgtgcct gcggcgatct ggtcgatggg
    23641 tatttatgca tcaatggcgg tggcggcgtt tattggcctt gtctggcaga tgaaaatggc
    23701 caacctggcg gtggcggcga tggcccccat tggtgccgtg tttaccttta ttgccctggt
    23761 taccggctct gcatggggaa aaccgatgtg gggcacctgg tgggtatggg atgcacgtct
    23821 gacttctgaa ctggtgctgc tgtttttgta tgtgggtgtg attgccctgt ggcacgcctt
    23881 cgacgaccgc cgtctggcgg gccgtgcggc aggtatcctg gtgctgattg gcgtggtgaa
    23941 tctgccgatt attcattact ccgtggagtg gtggaacacc ctgcatcagg gatcaacgcg
    24001 gatgcagcaa agtatcgatc cggcgatgcg ttcgccgctg cgctggtcga tttttggctt
    24061 cctgctcctg tctgccacgc tgacgctgat gcggatgcgt aatttgattt tgctgatgga
    24121 aaaacgccgt ccgtgggtga gtgaactgat actgaaaaga ggccgtaaat gacccttgca
    24181 tttgcttcct ggaatgaatt tttcgcaatg ggcggttacg ccttttttgt ctggctggcg
    24241 gtggtgatga ccgttattcc gctggtggtt ttggtcgtgc actcggtgat gcagcatcgc
    24301 gcaattctgt gtggtgtgga gcaacagcgg gcgcgtgagg cgcgtttacg tgctgcgcaa
    24361 cagcaggagg ctgcatgaat attcgccgta aaaaccgctt gtggattgcc tgtgctgtgt
    24421 tggcaggttt ggcgctgacc atcggtctgg tgctgtatgc gctgcgctcg aatatcgatc
    24481 tcttttatac gccgggggaa attctctacg gcaagcgtga aactcagcaa atgccggaag
    24541 tcggtcagcg tctgcgcgtt ggcgggatgg tgatgccggg tagtgtgcag cgcgatccca
    24601 attcgctgaa agtgaccttc accatttacg acgctgaagg ctcagtggat gtctcttacg
    24661 aaggcatttt gccggatctg ttccgtgaag ggcagggcgt tgtggtgcag ggcgagctgg
    24721 aaaaaggcaa tcatatcctc gcgaaagaag tgctggcgaa acacgacgaa aactacacgc
    24781 cgccagaagt tgagaaagcg atggaagcta accaccgtcg cccggcgagt gtttataagg
    24841 acccagcatc atgatgccgg aaattggaaa cgggctgctg tgcctggcgc tgggaattgc
    24901 gctgctgctg tccgtgtatc cgctatgggg cgtggcgcgc ggagatgcgc gcatgatggc
    24961 gtcttcccgc ttgtttgcct ggctgctgtt tatgtctgtg gctggcgcat ttctggtgct
    25021 ggtcaatgct ttcgtggtca acgactttac cgtcacctat gttgccagca actccaatac
    25081 ccagcttccg gtgtggtatc gcgtggcggc tacctggggc gcgcatgaag gttcgcttct
    25141 gctgtgggtg ctgctgatga gcggctggac ctttgcggtg gcgattttta gtcagcgtat
    25201 tccgctggat attgtggccc gtgtactggc gataatgggg atggtcagcg tcggcttttt
    25261 gctgttcatt ctctttacct ctaacccgtt ctcacgcacg ctgccgaact tcccaattga
    25321 agggcgcgat cttaacccgc tgttacagga tccggggctg atcttccatc cgcctctgct
    25381 ttatatgggg tacgtgggtt tctcggtggc gtttgctttt gccattgctt ctttgctgag
    25441 cgggcgtctg gacagcactt atgcgcgttt tactcgcccg tggacgctgg cggcgtggat
    25501 tttcctgacg ctcggcattg tgctcggttc cgcatgggcc tattacgaac tcggctgggg
    25561 gggctggtgg ttctgggatc cggtagaaaa cgcctcgttt atgccgtggc tggtggggac
    25621 tgcgctgatg cactcactgg cggtcactga acaacgcgcc agcttcaaag cgtggacatt
    25681 actgctggca atcagtgcct tctcgttgtg tctgctgggg actttcctgg tgcgttccgg
    25741 cgtgctggta tcggtacacg cgtttgcctc tgatccggca cgcggtatgt ttatcctcgc
    25801 ctttatggta ctggtgattg gtggttcgct gctgctgttt gccgcgcgtg gacacaaagt
    25861 tcgctcacgc gtaaacaatg cgctgtggtc gcgggaatct ctgctgttag cgaacaacgt
    25921 tttgttggtc gccgcgatgc tggtggtatt actggggacg ctgctgccgc tggtgcacaa
    25981 gcaactggga ctgggcagta tttcgattgg cgaaccgttc ttcaacacca tgtttacctg
    26041 gctgatggtg ccgtttgcgc tgctgcttgg tgtcggtcct ctggtgcgct gggggcgcga
    26101 tcgcccacgt aaaatccgca atttattgat tatcgccttc atctcaacgc tggtgctgtc
    26161 gctgctgctg ccgtggctgt tcgaaagcaa agttgtggcg atgacggtgc tcggcctggc
    26221 aatggcctgc tggattgctg tgctggcaat tgcggaagct gcgctgcgta tttcacgtgg
    26281 cacgaaaacc accttcagtt attggggaat ggtggcggct cacctggggc tggcagtgac
    26341 aattgttggt attgccttta gccagaacta tagcgttgag cgtgatgtgc gcatgaagtc
    26401 cggcgatagc gtcgatattc atgaatatcg cttcaccttc cgtgatgtca aagaggtgac
    26461 tggcccgaac tggcgcggcg gtgtggcgac tattggcgta acgcgagagg gtaaaccgga
    26521 aacggtgctg tatgcggaaa aacgttatta caacactgcc gggtcgatga tgaccgaagc
    26581 ggcgattgac ggcggcatca cgcgtgacct gtacgccgcg ctcggtgaag agctggaaaa
    26641 cggcgcgtgg gccgtgcgtc tttactacaa accgtttgtt cgctggattt gggcgggcgg
    26701 gctgatgatg gcgttgggcg gactgctgtg tctgtttgat cctcgctatc gtaagcgcgt
    26761 gagtccgcaa aaaactgcgc cggaggctgt atgaagcgca aagtattgtt aattccgttg
    26821 attatcttcc tggcgattgc cgcggcgctg ctgtggcagc tggcgcgtaa tgccgaaggg
    26881 gatgatccga ccaatctgga atcggcgctc attggcaagc cagtgccgaa gtttcgcctc
    26941 gaatcactgg acaatccggg gcagttttat caggcggatg tgctgactca gggcaaacct
    27001 gtgctgctta acgtttgggc tacctggtgt ccgacctgcc gtgcggaaca tcaatatctg
    27061 aatcagcttt ctgcgcaggg cattcgcgtg gtcggcatga actataaaga cgatcgccag
    27121 aaggcaataa gctggctgaa agagctgggc aatccttacg cgctaagcct gtttgatggc
    27181 gatggcatgt tagggctgga tctcggtgtc tatggcgcgc cagaaacgtt cctcatcgac
    27241 ggcaacggca tcattcgcta tcgccatgcg ggcgatctca atcctcgcgt ctgggaagaa
    27301 gagatcaagc cgctgtggga gaaatacagt aaggaggccg cacaatgagg tttttattgg
    27361 gcgtgctgat gctgatgatc tccggctcag cgctggcgac catcgacgtg ttgcagttta
    27421 aggatgaagc gcaggagcag cagttccgcc aactcactga agaactacgc tgcccgaaat
    27481 gccagaacaa cagcattgcc gattccaact cgatgattgc caccgacctg cgccagaaag
    27541 tgtatgaact gatgcaggaa ggtaaaagta aaaaagagat tgtcgattat atggtggcgc
    27601 gttacggcaa cttcgtcact tacgatccgc cgttaacgcc gctgaccgtg ctgctgtggg
    27661 tgcttccggt agtggctatt ggcattggcg gttgggtcat ttacgcccgt tcgcggcgtc
    27721 gggtacgcgt ggtgccggac gcgtttcctg aacaaagcgt gccggaaggt aagcgtgccg
    27781 gatatattgt ttatctgccg ggtattgtgg tggcgttaat tgtggctggc gtcagctact
    27841 accagactgg caattatcag caggtgaaaa tctggcagca ggccacggca caggctccgg
    27901 cgttgctgga cagggcgctg gatccgaaag ccgatccgct caacgaagaa gagatgtcgc
    27961 gtcttgcgct ggggatgcgt actcaactgc aaaaaaatcc gggagatata gaaggctgga
    28021 ttatgttggg ccgcgttggc atggcgctgg gtaacgccag tatcgccacc gatgcatacg
    28081 ctactgcgta tcgcctcgat ccgaaaaaca gtgatgccgc actgggttat gctgaagcgt
    28141 tgacacgttc atctgatccc aacgacaacc gcctcggtgg tgaactgctg cgccagttgg
    28201 tgagaacgga ccatagcaat atccgtgtgt taagcatgta tgcgtttaat gcctttgagc
    28261 agcagcgatt tggcgaagcc gttgccgcgt gggagatgat gttgaaactc ttatctgcca
    28321 acgatactcg ccgtgcggtg attgaacgta gtatcgcgca ggcgatgcaa catttgtcgc
    28381 cgcaggagag taaataaaaa gaggcccgat ggtgatgcca tcgggctatt tttattgtgc
    28441 cccgcgttgt tgcaggaaca gaatggtggc tgccacgcgt gagcggacat tgagtttgcg
    28501 cagcagattg cgaatatgta cttttactgt ctgctctgaa atattcaaca ccgaggcaat
    28561 ctgtttattt gacagcccct gtgccagctc gtgcagaaca tccagctcgc gctccgtcag
    28621 cacgctgaag ggatcttctt ccgcgccaaa catttcacgt tcacgtaagt actgattgac
    28681 gcgttcgcta aagactttgc tgcctttcgc tccagcacga attgcttcca gcaatacttc
    28741 cgggtcgctg tctttcaaca gataaccgtc tgcgcctgcg tctatcagcg caaagacatc
    28801 gctggaggca tctgatacgg tcaggataat aatttgcgcg gtaacgccat ccctgcgcaa
    28861 ggcattgagg gtatccaggc cactcatacc tttcatattg agatccagca agatcacgtc
    28921 gatatccagt ctatttgcca gatcgatcgc gctcgcgccg tcgcccgctt cggcgaccac
    28981 ttcaaagcta ggatcaagct ccagtaactg acgaacaccg cgtcgcataa gtggatgatc
    29041 atccacaatc atcacctgaa aaggcgttgc ttcaggcata gtagtctcct ggggttttat
    29101 tagaatcatt atgtttgagc gtagcgttgg taacgctacc aggcgcgtga atgttacccc
    29161 attttatgta tggacatgta gtgaaaacta caaccttgtc gttcgctttg gcatcatttt
    29221 cattataaag acggaatttt gcatcagctt ctc
//
LOCUS       DAJVUP010000032        29110 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.032, whole genome shotgun sequence.
ACCESSION   DAJVUP010000032 DAJVUP010000000
VERSION     DAJVUP010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29110
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.032"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            226..669
                     /locus_tag="OQQ75_001341"
     CDS             226..669
                     /locus_tag="OQQ75_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004997737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1975729.1"
                     /translation="MDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPT
                     TISRLNLTLTDVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFH
                     EIRSLSGRLHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI"
     gene            905..1723
                     /gene="ybhA"
                     /locus_tag="OQQ75_001342"
     CDS             905..1723
                     /gene="ybhA"
                     /locus_tag="OQQ75_001342"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyridoxal
                     phosphate/fructose-1,6-bisphosphate phosphatase"
                     /protein_id="HCS1975730.1"
                     /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTG
                     RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHI
                     HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFAL
                     THDDMPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENV
                     VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI"
     gene            complement(1724..2782)
                     /gene="modC"
                     /locus_tag="OQQ75_001343"
     CDS             complement(1724..2782)
                     /gene="modC"
                     /locus_tag="OQQ75_001343"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HCS1975731.1"
                     /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI
                     SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMA
                     KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD
                     IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG
                     SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQ
                     ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA
                     IKPGLWLYAQIKSVSITA"
     gene            complement(2785..3474)
                     /gene="modB"
                     /locus_tag="OQQ75_001344"
     CDS             complement(2785..3474)
                     /gene="modB"
                     /locus_tag="OQQ75_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HCS1975732.1"
                     /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK
                     ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM
                     SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS
                     LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW
                     LARISRERAGR"
     gene            complement(3474..4247)
                     /gene="modA"
                     /locus_tag="OQQ75_001345"
     CDS             complement(3474..4247)
                     /gene="modA"
                     /locus_tag="OQQ75_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1975733.1"
                     /translation="MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDI
                     ATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQ
                     TLLGNSLVVVAPKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL
                     GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKV
                     EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK"
     gene            complement(4413..4562)
                     /gene="acrZ"
                     /locus_tag="OQQ75_001346"
     CDS             complement(4413..4562)
                     /gene="acrZ"
                     /locus_tag="OQQ75_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux pump accessory protein AcrZ"
                     /protein_id="HCS1975734.1"
                     /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ
                     PGQNH"
     gene            4691..5479
                     /gene="modE"
                     /locus_tag="OQQ75_001347"
     CDS             4691..5479
                     /gene="modE"
                     /locus_tag="OQQ75_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-dependent transcriptional regulator"
                     /protein_id="HCS1975735.1"
                     /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS
                     YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV
                     LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV
                     AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNANNQLPGIISHIERGAEQCE
                     VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC"
     gene            5547..7019
                     /gene="modF"
                     /locus_tag="OQQ75_001348"
     CDS             5547..7019
                     /gene="modF"
                     /locus_tag="OQQ75_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HCS1975736.1"
                     /translation="MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA
                     LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTT
                     AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKILLCQALMSEPDLLILD
                     EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGA
                     KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL
                     NNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDI
                     KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDK
                     RTADAPFHSLSWGQQHLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE
                     GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY"
     gene            7280..8296
                     /gene="galE"
                     /locus_tag="OQQ75_001349"
     CDS             7280..8296
                     /gene="galE"
                     /locus_tag="OQQ75_001349"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308814.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HCS1975737.1"
                     /translation="MRVLLTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI
                     ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVN
                     GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL
                     TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF
                     GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGIGSSVLDVVNAF
                     SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ
                     GYPD"
     gene            8306..9352
                     /gene="galT"
                     /locus_tag="OQQ75_001350"
     CDS             8306..9352
                     /gene="galT"
                     /locus_tag="OQQ75_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HCS1975738.1"
                     /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV
                     LPAHDPDCFLCAGNVRVTGDKNHDYTGTYVFTNDFAALMSDTPDAPESNDPLMRCQSA
                     RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC
                     SNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH
                     WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY
                     SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER
                     LRAVSDIHFRESGV"
     gene            9356..10504
                     /gene="galK"
                     /locus_tag="OQQ75_001351"
     CDS             9356..10504
                     /gene="galK"
                     /locus_tag="OQQ75_001351"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HCS1975739.1"
                     /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL
                     PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLNAPIVAHENYQWANYVRGVVKH
                     LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE
                     AENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL
                     VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV
                     EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLAEIVKAVIGDKGGVRMTGG
                     GFGGCIVALIPEELVPAVQQAVAEQYEAKTGIKETFYVCKPSQGAGQC"
     gene            10498..11538
                     /gene="galM"
                     /locus_tag="OQQ75_001352"
     CDS             10498..11538
                     /gene="galM"
                     /locus_tag="OQQ75_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HCS1975740.1"
                     /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL
                     SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ
                     LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY
                     RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT
                     SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT
                     TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE
                     YSSLTEYQFIAE"
     gene            11740..12492
                     /gene="gpmA"
                     /locus_tag="OQQ75_001353"
     CDS             11740..12492
                     /gene="gpmA"
                     /locus_tag="OQQ75_001353"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HCS1975741.1"
                     /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL
                     LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE
                     TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR
                     VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF
                     DENFKPLKRYYLGNADEIAAKAAAVANQGKAK"
     gene            complement(12650..13702)
                     /gene="aroG"
                     /locus_tag="OQQ75_001354"
     CDS             complement(12650..13702)
                     /gene="aroG"
                     /locus_tag="OQQ75_001354"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HCS1975742.1"
                     /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH
                     KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV
                     GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG
                     AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS
                     AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK
                     KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDT
                     DALLRQLANAVKARRG"
     gene            14018..14398
                     /locus_tag="OQQ75_001355"
     CDS             14018..14398
                     /locus_tag="OQQ75_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgS-like family protein"
                     /protein_id="HCS1975743.1"
                     /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAATDAGQ
                     VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD
                     INKKVQTGDGINNDVDTKTDGTTQ"
     gene            14512..15453
                     /gene="zitB"
                     /locus_tag="OQQ75_001356"
     CDS             14512..15453
                     /gene="zitB"
                     /locus_tag="OQQ75_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc transporter ZitB"
                     /protein_id="HCS1975744.1"
                     /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS
                     LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT
                     ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV
                     LGDLLGSVGAIIAALIIIWTGWTPADPILSIVVSLLVLRSAWRLLKDSVNELLEGAPV
                     SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHAHDALLDQIQHYL
                     MDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH"
     gene            complement(15450..16169)
                     /gene="pnuC"
                     /locus_tag="OQQ75_001357"
     CDS             complement(15450..16169)
                     /gene="pnuC"
                     /locus_tag="OQQ75_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HCS1975745.1"
                     /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK
                     ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR
                     WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP
                     FWDSCMMVLSIVAMLLMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA
                     LNGSRMWINSARERGSCALSH"
     gene            complement(16207..17250)
                     /gene="nadA"
                     /locus_tag="OQQ75_001358"
     CDS             complement(16207..17250)
                     /gene="nadA"
                     /locus_tag="OQQ75_001358"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HCS1975746.1"
                     /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM
                     VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK
                     TILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV
                     ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEY
                     PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPD
                     KELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVP
                     LNRMLDFAATLRG"
     gene            complement(17499..17574)
                     /locus_tag="OQQ75_001359"
     tRNA            complement(17499..17574)
                     /locus_tag="OQQ75_001359"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17539..17541),aa:Lys,seq:ttt)
     gene            complement(17721..17796)
                     /locus_tag="OQQ75_001360"
     tRNA            complement(17721..17796)
                     /locus_tag="OQQ75_001360"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17761..17763),aa:Lys,seq:ttt)
     gene            complement(17800..17875)
                     /locus_tag="OQQ75_001361"
     tRNA            complement(17800..17875)
                     /locus_tag="OQQ75_001361"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17840..17842),aa:Val,seq:tac)
     gene            complement(17927..18002)
                     /locus_tag="OQQ75_001362"
     tRNA            complement(17927..18002)
                     /locus_tag="OQQ75_001362"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17967..17969),aa:Lys,seq:ttt)
     gene            complement(18005..18080)
                     /locus_tag="OQQ75_001363"
     tRNA            complement(18005..18080)
                     /locus_tag="OQQ75_001363"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18045..18047),aa:Val,seq:tac)
     gene            complement(18116..18191)
                     /locus_tag="OQQ75_001364"
     tRNA            complement(18116..18191)
                     /locus_tag="OQQ75_001364"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18156..18158),aa:Lys,seq:ttt)
     gene            complement(18356..19147)
                     /gene="cpoB"
                     /locus_tag="OQQ75_001365"
     CDS             complement(18356..19147)
                     /gene="cpoB"
                     /locus_tag="OQQ75_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CpoB"
                     /protein_id="HCS1975747.1"
                     /translation="MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ
                     LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS
                     SGGAAAQSTSSDQSGAAASTTPTADAGTANAGAPVKSGDANTDYNAAIALVQDKSRQD
                     DAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD
                     AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM"
     gene            complement(19157..19678)
                     /gene="pal"
                     /locus_tag="OQQ75_001366"
     CDS             complement(19157..19678)
                     /gene="pal"
                     /locus_tag="OQQ75_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HCS1975748.1"
                     /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD
                     ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK
                     VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE
                     AAYSKNRRAVLVY"
     gene            complement(19713..21005)
                     /gene="tolB"
                     /locus_tag="OQQ75_001367"
     CDS             complement(19713..21005)
                     /gene="tolB"
                     /locus_tag="OQQ75_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HCS1975749.1"
                     /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW
                     AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPSAWSALGIDAVVVG
                     QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK
                     GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT
                     FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA
                     SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN
                     QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS
                     SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL"
     gene            complement(21138..22319)
                     /gene="tolA"
                     /locus_tag="OQQ75_001368"
     CDS             complement(21138..22319)
                     /gene="tolA"
                     /locus_tag="OQQ75_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HCS1975750.1"
                     /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG
                     GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER
                     LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAA
                     KKAAADAKKKAEAEAAKAAAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAK
                     AEAEKKAAAEKAAADKKAAADKKAAEKAAAEKAAADKKAAAEKAAAEADDIFGELSSG
                     KNAPKTGGGAKGNNASPAGSGNSKNNGASGADINNYAGQIKSAIESKFYDASSYAGKT
                     CTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFK
                     P"
     gene            complement(22384..22812)
                     /gene="tolR"
                     /locus_tag="OQQ75_001369"
     CDS             complement(22384..22812)
                     /gene="tolR"
                     /locus_tag="OQQ75_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HCS1975751.1"
                     /translation="MARARGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE
                     VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKAN
                     PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI"
     gene            complement(22816..23508)
                     /gene="tolQ"
                     /locus_tag="OQQ75_001370"
     CDS             complement(22816..23508)
                     /gene="tolQ"
                     /locus_tag="OQQ75_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolQ"
                     /protein_id="HCS1975752.1"
                     /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA
                     AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE
                     AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK
                     QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH
                     RQAFTVSESNKG"
     gene            complement(23505..23909)
                     /gene="ybgC"
                     /locus_tag="OQQ75_001371"
     CDS             complement(23505..23909)
                     /gene="ybgC"
                     /locus_tag="OQQ75_001371"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1975753.1"
                     /translation="MNTTLFRWPARVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH
                     FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT
                     LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ"
     gene            complement(24059..24352)
                     /gene="ybgE"
                     /locus_tag="OQQ75_001372"
     CDS             complement(24059..24352)
                     /gene="ybgE"
                     /locus_tag="OQQ75_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HCS1975754.1"
                     /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS
                     ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIIGLIFFFF"
     gene            complement(24352..24465)
                     /gene="cydX"
                     /locus_tag="OQQ75_001373"
     CDS             complement(24352..24465)
                     /gene="cydX"
                     /locus_tag="OQQ75_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HCS1975755.1"
                     /translation="MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI"
     gene            complement(24480..25619)
                     /gene="cydB"
                     /locus_tag="OQQ75_001374"
     CDS             complement(24480..25619)
                     /gene="cydB"
                     /locus_tag="OQQ75_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1975756.1"
                     /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT
                     ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV
                     GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
                     FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA
                     GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLP
                     LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ
                     LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY"
     gene            complement(25635..27203)
                     /gene="cydA"
                     /locus_tag="OQQ75_001375"
     CDS             complement(25635..27203)
                     /gene="cydA"
                     /locus_tag="OQQ75_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415261.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HCS1975757.1"
                     /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG
                     KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFN
                     FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKR
                     SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPD
                     QEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSG
                     STDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRI
                     MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP
                     WAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGR
                     YHFEQSSTTTQPAR"
     gene            complement(28051..>29110)
                     /locus_tag="OQQ75_001376"
     CDS             complement(28051..>29110)
                     /locus_tag="OQQ75_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1975758.1"
                     /translation="SDDGDEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVIRYDM
                     AVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPTPFNT
                     DSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAVFSEG
                     LREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLSCRLS
                     LLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDAMKLNKAGFNVPESYSLLKMPPVGC
                     LISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEENQGSN
                     LSGPFLPGQSRTFSYRLA"
BASE COUNT         7359 a         7648 c         7100 g         7003 t
ORIGIN      
        1 aatcggaaaa tcgatactgg aaaaactcta actcggtggc cagtttttgt tgaccacttc
       61 acagacattt ttaaaacagc tatagcttct ggtcttgccg aagaagatcc agcttctgca
      121 accaggccat tcagaactga agtgaagcgc agtcgactgt taattgacga gtatctgtta
      181 atcaggaaaa tagcagacgt ccagaacgaa tggttcggcc tttgcatgga tcttgcactg
      241 gtaacaggac agcgcgaagg agatctggcg gctatgagat gggaggatat aagagatggc
      301 agactatacg tggaacaaca aaaaacaggg gcaaaaattc gcatttctct ccccaccacg
      361 atttccagat tgaatttaac acttaccgat gtactggata acttgaaaaa aataaacggt
      421 aaaaacgaaa agttactcgg agggaagaca gccaggacaa tcgcagcaca gttcaggatt
      481 gcccgagaca catccggatt gaaatgggaa ggtgacccac cgccatttca tgaaatccga
      541 agtttatccg gtcgcctgca ctcagcagaa aaaggcagtg atttcactca ggcgctcctt
      601 ggacatcgtt catccagcat gacggataaa taccgtgacg gacgagggag ggaatggaaa
      661 gacatttaga attaatttcg aatgatttcg aaacaccact tgtaattaat tgattataaa
      721 ggattaattc ctaagaggca tttgcttcat gaatgctcct ttgcatttag caactgactg
      781 taacagctaa aattagtcgc ttttggcggt gaatgctgaa ttaaaacgca gaattttgtc
      841 cgatagtggt atcggtgtac cattcgcgca gacgaaaatt cttaacctta atctggaata
      901 cgccatgacc acacgcgtga ttgctctcga cttagacggc accttattga ccccgaaaaa
      961 gaccctgctt ccttcatcga tagaagccct ggcccgcgct cgcgaagcag gctatcaatt
     1021 aatcatcgtc acaggtcgcc atcacgtcgc tattcatcct ttttatcagg cgctggcgct
     1081 ggatacacct gctatttgct gtaatggcac ctatttgtat gattatcatg caaaaaccgt
     1141 gctggaagcg gacccaatgc ccgttaataa agccctgcaa ctcattgaga tgctgaatga
     1201 acaccacatt cacggtctga tgtatgtgga tgatgcaatg gtctatgagc acccgaccgg
     1261 gcatgtcatt cgcacgtcta actgggcgca aaccctgccg ccggaacagc gtccgacttt
     1321 cacacaagtc gcttctctgg ctgaaacggc gcaacaagtt aacgccgtat ggaagttcgc
     1381 cctgacgcac gatgacatgc cgcaattgca gcattttggt aagcatgtcg aacatgaact
     1441 gggactggag tgtgaatggt cctggcacga tcaggttgat attgcacgcg gcggcaacag
     1501 caaaggtaaa cgtttgacga aatgggttga ggcgcaaggc tggtcgatgg aaaacgtcgt
     1561 ggcgttcggc gataacttta atgatatcag tatgctggag gccgctggta caggcgtggc
     1621 gatgggcaac gccgatgacg cggtaaaagc gcgcgccaac attgtgattg gtgataacac
     1681 caccgacagc attgcccagt tcatttatag ccacctgatt taatcaggcg gttatcgaca
     1741 cacttttaat ttgcgcgtac agccacaggc ctggtttgat cgccagttca tccctggccc
     1801 acgggctgat acgcgcccac agcgttttac cgccgacttc cagctccact tccacctgac
     1861 cgttgtcgtc ataactatta acaacttttg cccgcaatac gttacgaatg ctggtttgct
     1921 gcggcggttg taaaaccaga gaaacatcgg aagcctgaat gcggatacgt agcgcagctt
     1981 gcagcggttc gtccagctta ttgacccaca aatgctgatc gcccagcgcc agcgcggtca
     2041 tcgcgtaatg cggatgatgc tcaagcaccg tcactttcag aatgctactt tgttgctctt
     2101 tcggcagcca cggattcatc acgctactac cccagacttc ttccagtgcg ccaaaggctt
     2161 tcacctgacc gttttccagt accatcactc tgtctgccag atggaggatc tcatccagcg
     2221 aatggctgac atacaacatc gggatgttga tttcccgcgt cagacgttgc agataaggca
     2281 acagttcgcg tttacgcgga atatccagtg acgccagcgg ttcatccagc aacagcaatt
     2341 ctggtgccgt cagcaaagcc cgcccaatcg ctacgcgctg tttttcgcct ccggacaggc
     2401 tgcctggtaa acggtcaagc aacggttcaa tgcctaaaag cgccaccagc ttatcgaact
     2461 gatcgaccat gcttttcgcc atgccgtagc gcagattgcc acgcactttg taatgcggaa
     2521 acagccgcgc atcctgaaaa acatagccaa cgcgacgctt ttctggcgtc aggcagatac
     2581 ctttttcggc atcatttagt acccgaccat tgaggacaat cctccctttt tgcgggcgcg
     2641 tcagtccact gatggcgtta atcagcgaag tttttccggc accggagacg ccaaagatag
     2701 cagtgatgcc attggcgggc agcgtttcat taatagtcag gcaatggttg cccaacgtct
     2761 gggaaaaatt cagttccagc atgattagcg ccccgcccgt tcacggctga ttctggccag
     2821 ccattctgaa atcaacaggg agatcatcgc cagcgcaata gaaataatgc acagtctcgc
     2881 cgcgccactt tccccgccgg gggtctggat cagggtatac atggcagagg gaatggttcg
     2941 cgtttcgcca ggaatgttcg acacaaaggt gatggttgca ccaaactcac cgagagaacg
     3001 agcaaaagcc agtaccgtac caacaataat tcccggtaag gtcagcggta acgtgatagt
     3061 aaagaaaacg cgccagcgcc cggcacctag tgttcttgcg gcctgttcga gtttgacatc
     3121 aaccccttcc agcgccagac gaattgcccg caccatcagc ggaaacgaca tgacggcggc
     3181 agcgagaacc gcgccgcgcc agctaaaggc gaaggtaata ccaaaccagt catacagacg
     3241 ttcaccgata aatccgcgcc gtcccatcga aactaataat aagtaaccga cgaccacggg
     3301 cggtaacacc agcggtagat gcagtacgct gtcgagcaga gctttgcccg gaaacgtgca
     3361 acgcaccagt aaccaggcaa aaaagatccc aaacggcagg ctaaacagca cagccaggga
     3421 agaaactttc aggcttaata aaactgcctg ccattctgga tcggtcagta tcattacttg
     3481 gttgtaaatc cgtaacgttt aaagatttcc gctgcctgcg gtcccttcag ataatcataa
     3541 aatgctttca ctgtcgcatt gttatgccct tccacaacag caaccggata ttccactttt
     3601 ttatgtgaat cttccgggaa ggtggcaacc acttttaccc ctttgctgac aactgcgtca
     3661 gaaccgtaaa caatgcccaa cggcgcttca ttgcgttcga ccaacgccag cgcgccacga
     3721 acatcttccg ccggagccaa tttcggggag agcgtatccc atgcgcccag tttttgcagt
     3781 gcttcttttg cataaatgcc agcagggaca tgttccggat cgccaaccgc gaggcgaccg
     3841 ccattcagca gcgaagtcca gttagttgtg ctgtcgatga tgaaatcttt ctgctcgctg
     3901 gctttcggtg ctacaacgac caggctattg ccgagcagtg tctggcgcga agccgtatcg
     3961 atcgcttttt tatcaaccgc ataatccatc catttctgat cggcagagat aaacagatcc
     4021 gcaggcgctc ccgcttcaat ctgacgggcc agagtagatg acgaagcgaa agaagaaacc
     4081 acatccacgc ctttttcttt tttatactgc gtagcaatgt cctgcattgc gttagtcagt
     4141 gatgcggcgg cgaacaccgt gattttccct tcatctgcca gtgtattgcc agcaacagcg
     4201 aaagagagtg ccgccccggc aaacaagttc aaccatttac gagccattgg taacccctta
     4261 atgtaacgtt atataggtga caatataacg gctaactcag aattttccca gcagttattg
     4321 ctaacctttg tgaggtagat aagaaaaaat atcggctgga aaagcaggaa gttgagaaaa
     4381 agaaatgccc gactaagtgg gcattcaggg aatcaatgat tttgtccggg ctggtctttt
     4441 ttaccaacac cagaaaagat gttgaatact tcaccaagac cgtaaatcag acccaggatg
     4501 atggccatca cgacaggtac catgattacg gcgaatacca gactttttaa taactctaac
     4561 atggtcaact ccagatatag tcatgagact attctaaccg ctaagcacag aaaagcactc
     4621 cccttttgtg cggtcagctt tgcgtggcgt tcgttttccg tcacaataag acttttgcca
     4681 ggacattgtt atgcaggccg aaatccttct cacccttaag ctccaacaaa aattattcgc
     4741 cgacccgcgc cggatttcgc tactaaaaca cattgcgctt tccggttcca ttagccaggg
     4801 agcgaaagat gccggtatca gctataaaag cgcctgggat gccattaacg agatgaatca
     4861 gttaagcgag catattctgg ttgagcgcgc aacaggcggt aaaggtggcg gcggcgcagt
     4921 actgacccgc tatggtcagc gactgattca gctctatgac ttactggcgc aaatccagca
     4981 aaaagccttt gatgtgttaa gtgacgatga cgccctgccg ctgaacagcc tgctggccgc
     5041 gatctcacgt ttttcactgc aaaccagcgc ccgtaaccag tggttcggta ccatcaccgc
     5101 ccgcgatcat gatgacgttc aacagcatgt tgatgtctta ctggctgacg gaaaaacacg
     5161 cctgaaagtc gcaattaccg cacaaagcgg cgcacgtctg gggctggatg aaggcaaaga
     5221 agtgttgata ttgctaaaag cgccgtgggt aggcattact caggacgaag cggtcgcaca
     5281 aaacgccaac aaccaattac cgggtattat tagtcatatt gagcgcggcg cagagcagtg
     5341 cgaagtatta atggcgctac ccgacgggca aacactgtgc gccacagtgc cggtaaatga
     5401 agcgacttct cttcagcaag ggcagaatgt cacggcctac tttaatgccg acagcgtgat
     5461 tatcgccacg ctgtgctaag cgtgttgaca atttgttatg aaacacgtat ccctgtcagt
     5521 aatcgctgca caaaatggga tataaaatgt catcgttgca aattttgcaa ggcacgtttc
     5581 gtcttagcga cacaaaaacg ctgcaattgc ctcagctaac gttaaacgcg ggtgatagtt
     5641 gggcgtttgt cggttcgaat ggaagcggga aatcggccct ggcccgcgcg ctggcggggg
     5701 aacttccgct tttgaaaggt gaacggcaaa gccagttttc ccacatcact cgtctctcct
     5761 tcgagcaatt gcaaaaactc gtcagcgacg aatggcagcg gaataacacc gatatgctcg
     5821 gccctggcga agatgacacc ggacgcacta cggctgagat cattcaggat gaagtaaagg
     5881 atgcaccgcg ttgcatgcaa ctggcgcagc agttcggtat taccgccctc ctcgaccgac
     5941 gctttaaata cctttccact ggcgagacgc gaaaaatcct gctgtgtcag gcgctgatgt
     6001 cggagcctga cttgttgatt cttgatgagc cgttcgatgg cctggatgtt gcctcacgtc
     6061 agcagctggc tgagcgactc gcctcgttac atcagtccgg tattactctg gtactggtgc
     6121 tcaatcgctt cgatgagatc ccggagtttg tccagtttgc tggcgtgctg gcggattgca
     6181 cgttagcgga aactggcgct aaagaggaac tgctccaaca agcactcgtc gcgcaactgg
     6241 cacatagtga acagcttgaa ggtgtgcaac tgccggagcc ggatgaacct tcagcacgtc
     6301 acgccttacc cgccaacgaa ccgcgcattg tgctgaacaa tggcgtggtt tcttataacg
     6361 atcgccccat tcttaataac cttagctggc aggtgaatcc aggtgaacac tggcaaattg
     6421 tcgggccaaa tggtgcagga aaatcgacgt tattaagcct ggttactggc gatcatccgc
     6481 aaggttacag caacgatttg acgcttttcg gacgacgtcg cggcagcggc gaaaccatct
     6541 gggatatcaa aaagcatatc ggttacgtca gcagtagttt gcatctggat taccgggtca
     6601 gcactaccgt gcgtaatgtg attctttctg gctattttga ttcgattggc atttatcagg
     6661 ccgtttcgga tcgccagcaa aaactggtgc agcagtggct ggatattctc ggcattgata
     6721 aacgtacggc tgacgctccg ttccatagtc tttcctgggg acagcagcat ctggcgctga
     6781 tcgtccgcgc actggtgaaa catccgacgt tgcttattct cgatgaacca ctacaggggc
     6841 ttgatccgct caatcgccag cttatccgcc gttttgttga tgtgctgatt agcgaaggtg
     6901 aaacgcaatt gttgtttgtt tcgcaccacg ctgaagatgc gcctgcctgt attacccatc
     6961 gccttgagtt cgtgccggac ggtggactct atcgctatgt gctgacaaaa atatattgag
     7021 tcggtagtgc tgaccttgcc ggaggcggcc taagcgccct ctccggccaa cggttcgacg
     7081 catgcaggca tgaaaccgct tcttttttca gataaaaagc gcaatcattc ataaaccctc
     7141 tgttttataa tcacttaatc gcgcataaaa aacggctaaa ttcttgtgta aacgattcca
     7201 ctgatttatt ccatgtcaca cttttcgcat ctttgttatg ctatggttat ttcataccat
     7261 aagcctaatg gagcgaatta tgagagttct gcttaccggt ggtagcggtt acattggaag
     7321 tcatacctgc gtgcaattac tgcaaaacgg tcatgatgtc atcattcttg ataacctctg
     7381 taacagtaag cgcagcgtac tgcctgttat cgagcgttta ggcggcaaac atccaacgtt
     7441 tgttgaaggc gatattcgta acgaagcgtt gatgaccgag atcctgcacg atcacgctat
     7501 cgacaccgtg atccacttcg ccgggctgaa agccgttggc gaatcggtac aaaaaccgct
     7561 ggaatattac gacaacaatg tcaacggtac tctgcgcctg attagcgcca tgcgcgccgc
     7621 taacgtcaaa aactttattt ttagctcctc cgccaccgtt tatggcgatc agcccaaaat
     7681 tccatacgtt gaaagcttcc cgaccggcac accgcaaagc ccttacggca aaagcaagct
     7741 gatggtggaa cagatcctca ccgatctgca aaaagcccag ccggactgga gcattgccct
     7801 gctgcgctac ttcaacccgg ttggcgcgca tccgtcgggc gatatgggcg aagatccgca
     7861 aggcattccg aataacctga tgccatacat cgcccaggtt gctgtaggcc gtcgcgactc
     7921 gctggcgatt tttggtaacg attatccgac cgaagatggt actggcgtac gcgattacat
     7981 ccacgtaatg gatctggcgg acggtcacgt cgtggcgatg gaaaaactgg cgaacaagcc
     8041 aggcgtacac atctacaacc tcggcgctgg cataggcagc agcgtgctgg acgtggttaa
     8101 tgccttcagc aaagcctgcg gcaaaccggt taactatcat tttgcaccgc gtcgcgaggg
     8161 cgaccttccg gcctactggg cggacgccag caaagccgac cgtgaactga actggcgcgt
     8221 aacgcgcaca ctcgatgaaa tggcgcagga cacctggcac tggcagtcac gccatccaca
     8281 gggatatccc gattaaggaa cgaccatgac gcaatttaat cccgttgatc atccacatcg
     8341 ccgctacaac ccgctcaccg ggcaatggat tctggtttca ccgcaccgcg ctaagcgccc
     8401 ctggcagggg gcgcaggaaa cgccagccaa acaggtgtta cctgcgcacg atccagattg
     8461 cttcctctgc gcaggtaatg tgcgggtgac aggcgataaa aaccacgatt acaccgggac
     8521 ttacgttttc actaatgact ttgcggcctt gatgtctgac acgccagatg cgccagaaag
     8581 caacgatcct ttgatgcgtt gccagagcgc gcgcggtacc agccgggtga tctgcttttc
     8641 accggatcac agtaaaacgt tgccagaact gagcgttgcg gcattgacgg aaatcgtcaa
     8701 aacctggcag gagcaaaccg cagagctggg aaaaacgtac ccgtgggtgc aggtctttga
     8761 aaacaaaggt gcggcgatgg gctgctctaa cccgcatccg cacggacaga tttgggcaaa
     8821 tagcttcctg cctaacgaag ctgagcgcga agaccgcctg caaaaagaat attttgccga
     8881 acagaaatca ccaatgctgg tggattatgt tcagcgcgag ctggcagacg gtagccgtac
     8941 cgttgtcgaa accgaacact ggttagccgt tgtgccttac tgggctgcct ggccgttcga
     9001 aacgctactg ctgcccaaag cccacgtttt gcggatcacc gatttgaccg acgcccagcg
     9061 cagcgatttg gcgctggcgt tgaaaaagct gaccagtcgt tatgacaacc tcttccagtg
     9121 ctccttcccc tactctatgg gctggcacgg cgcaccattt aatggcgaag agaatcaaca
     9181 ctggcagctg cacgcgcact tttatccgcc tctgctgcgc tccgccaccg tacgtaaatt
     9241 tatggttggt tatgaaatgc tggcagagac ccagcgagac ctgaccgcag aacaggcagc
     9301 agagcgtttg cgcgcagtca gcgatatcca ttttcgcgaa tccggagtgt aagaaatgag
     9361 tctgaaagaa aaaacacaat ctctgtttgc caacgcattt ggctaccctg ccactcacac
     9421 cattcaggcg cctggccgcg tgaatttgat tggtgaacac acggactaca acgacggttt
     9481 cgttctgccc tgcgcgattg attatcaaac cgtgatcagc tgtgcaccac gcgatgaccg
     9541 taaagttcgc gtgatggcag ccgattatga aaatcagctc gacgagtttt ccctcaatgc
     9601 gcccattgtc gcgcatgaaa actatcaatg ggcgaactac gttcgtggcg tggtgaaaca
     9661 tctgcaactg cgtaacaaca gcttcggcgg tgtggacatg gtgatcagcg gcaatgtgcc
     9721 gcagggtgcc gggttaagtt cttccgcttc actggaagtc gcggtcggaa ccgtattgca
     9781 gcagctttat catctgccgc tggacggcgc acaaatcgcg cttaacggtc aggaagcaga
     9841 aaaccagttt gttggctgta actgcgggat catggatcag ctaatttccg cactcggcaa
     9901 gaaagatcat gccttgctga ttgactgtcg ttcactgggg accaaagcag tttccatgcc
     9961 gaaaggtgtg gctgtcgtca tcatcaacag taacttcaaa cgtaccctgg ttggcagcga
    10021 atacaacacc cgtcgtgaac agtgcgaaac cggtgcgcgt ttcttccagc agccagccct
    10081 gcgcgatgtc accattgaag agttcaacgc tgttgcacat gagctggacc caatcgtggc
    10141 gaaacgcgtg cggcatatcc tgactgaaaa cgcccgcacc gttgaagctg ccagcgcgct
    10201 ggagcagggc gacctgaaac gtatgggcga gttgatggcg gagtctcatg cctctatgcg
    10261 cgatgatttc gaaatcaccg tgccgcaaat tgacactctg gcagaaatcg tcaaagctgt
    10321 gattggcgac aaaggtggcg tacgcatgac cggcggcgga tttggcggct gtatcgtcgc
    10381 gttgatcccg gaagagctgg tgcctgccgt acagcaagct gtcgctgaac aatatgaagc
    10441 aaaaacaggt attaaagaga ctttttacgt ttgtaaacca tcacaaggag caggacagtg
    10501 ctgaacgaaa ctcccgcact ggcacccgat ggtcagccgt accgactgtt aactttgcgt
    10561 aacaacgcag ggatggtagt cacgctgatg gactggggtg cgactttact ttcagcccgt
    10621 attccgcttt ccgatggcag cgtccgcgag gcgctgctcg gctgtgccag cccggaatgc
    10681 tatcaggatc aggccgcgtt tctgggggcc tctattggtc gttatgccaa ccgcatcgcc
    10741 aatagccgtt atacctttga cggtgaaacc gtgacccttt cgccaagtca gggcgttaac
    10801 cagctgcacg gcggcccgga agggttcgac aaacgtcgct ggcagattgt gaaccagaac
    10861 gatcgtcagg tgctgtttgc cctgagttca gatgatggcg atcagggctt cccgggtaat
    10921 ctcggcgcaa cggtgcaata tcgtctgacc gacgataacc gtatctccat tacttatcgc
    10981 gccacagttg ataaaccttg cccggtgaat atgactaatc acgtctattt caatcttgac
    11041 ggcgagcagt ctgacgtgcg caatcacaag ttgcagattc tggcggacga atatctgccg
    11101 gttgatgaag gcggcattcc gcacgacggc ctgaaatctg tcgccggaac gtcttttgat
    11161 ttccgcagcg ccaaaatcat cgccagtgag tttcttgccg acgacgatca gcgcaaagtg
    11221 aaaggttacg atcacgcatt cttgttacag gccaaaggcg atggcaagaa agtggcggcg
    11281 catgtctggt cagcagatga aaaattgcag ctgaaggtct acaccaccgc tccggctctg
    11341 caattctact ccggcaactt cctcggcggc acaccgtcgc ggggaacaga accttacgcc
    11401 gactggcaag ggctggcgtt ggaaagcgag tttctgccgg acagcccgaa ccaccctgaa
    11461 tggccgcaac cggactgctt cctgcgtcct ggcgaagagt attccagcct gacggaatat
    11521 cagtttattg ctgagtaatg ttaagccctc gtcatgaggg ctttatctca tattgctcaa
    11581 atcaccagca aacaccgaca tatttgcaac tcaatattca caacaacctt acactgcgcc
    11641 actattttcg ctatggttat gcgtaagcat tgctgttgct tcgtcgcggc aatataatga
    11701 gaattattat cattaaaaga tgatttgagg agtaagtata tggctgtaac taagctggtt
    11761 ctggttcgtc atggcgaaag tcagtggaac aaagaaaacc gtttcaccgg ttggtacgac
    11821 gtggatctgt ctgagaaagg cgtaagcgaa gcaaaagcag caggtaagct gctgaaagag
    11881 gaaggttaca gctttgactt tgcttacact tctgtgctga aacgcgctat ccataccctg
    11941 tggaatgtgc tggacgaact ggatcaggca tggctgcccg ttgagaaatc ctggaaactg
    12001 aacgaacgtc actacggtgc gttgcagggt ctgaacaaag cggaaactgc tgaaaagtat
    12061 ggcgacgagc aggtgaaaca gtggcgtcgt ggttttgcag tgactccgcc ggaactgact
    12121 aaagatgatg agcgttatcc gggtcacgat ccgcgttacg cgaaactgag cgagaaagaa
    12181 ctgccgctga cggaaagcct ggcgctgacc attgaccgcg tgatccctta ctggaatgaa
    12241 actattctac cgcgtatgaa gagcggtgag cgcgtaatca tcgccgcaca cggtaactcc
    12301 ctgcgtgcgc tggtgaaata tcttgataac atgagcgaag aagagattct tgagctgaat
    12361 atcccgactg gcgtgccgct ggtgtatgag ttcgacgaga atttcaaacc gctgaaacgc
    12421 tattatctgg gtaatgctga cgagatcgca gcgaaagcag cggcggttgc aaaccagggt
    12481 aaagcgaagt aaacgtcatt cgtttaaaat gagaaagccg actgcaagtg agtcggcttt
    12541 tttgttgcta acaatggagc acattgcctg atgcgacgct tcgcgactta tcaggcctgt
    12601 ggtgattcat cggatacgcc actctgacgg cgcatccgac aattaaacct tacccgcgac
    12661 gcgcttttac tgcattcgcc agttgacgta acagagcatc ggtatcttcc cagccgatgc
    12721 aggcatcggt gatgctctta ccgtaggcca gcggctcccc gctctcgagg ctctgattgc
    12781 cttccaccag atggctttcc accatcacgc caataatggc cttttcgcca ccggcaatct
    12841 gctggcaaac gtcagcacaa acatccatct gctttttgaa ttgtttggac gagttagcat
    12901 ggctgaaatc gatcatcacc tgtgctggca ggcctgcttt gttcagccct tctttcactt
    12961 cagcaacgtg cttcgcgctg tagttaggct ctttaccgcc gcgcagaatg atatggcaat
    13021 cgccgttacc gctggtattc acaatcgccg aatgccccca tttcgttacg gacaggaagc
    13081 agtgcggcgc accggcggca ttaatggcat cgatagccac tttaatcgta ccgtcggtgc
    13141 catttttgaa gccgactgga caagaaagcc ctgatgccag ttcgcggtgc acctgcgatt
    13201 cggtggtacg tgcgccaatt gcgccccagc tcatcaggtc agcgagatat tgtggggtga
    13261 tcatatcgag aaactcaccc gccgctggca gaccgctgtc gttaatatca agcagcaatt
    13321 tacgggctat acgaagaccg tcgttgatct ggaagctgtt atccatatgc ggatcgttaa
    13381 tcagcccttt ccagcccacc gtggtacgcg gcttttcaaa atagacgcgc attacgattt
    13441 ccagctcatc tttcagctct tcacgcagcg ccagcaagcg agtggcatac tctttagccg
    13501 cgacaggatc atgaattgag cacgggccaa tcaccaccaa caggcgatca tcattacctt
    13561 tcaggatctt atggatcgct tttcgggcat gggcaaccgt attcgcggca ttttcagtag
    13621 cggggaattt ttccagcaat gcgacaggag gaagtaactc tttgatttct ttgatgcgta
    13681 aatcgtcgtt ctgataattc atgtctgttc cagtgttgcc atacttatct tagtgaatgc
    13741 aatacttcca atctatatct tccgtcagaa tgtgtaaacg gggttttaca ttatgaacgg
    13801 attaatcctg gaattagcaa gaaaaacgcc agattgtcgc gaaaaacgag atctctccta
    13861 caatttctaa ctgtaactcc tttgtttgtt aattatttca agattctctg ctgcgtttca
    13921 taaactggct gaaatcttaa accaatgcct tatattcacc tgcaaatgca ctgttggaag
    13981 aggttatccg acataacgac cataacagga gcatcctatg aaaatgacaa aactggccac
    14041 attatttctg actgccactc taagccttgc cagcggtgcc gcactggctg ccgatagcgg
    14101 agcgcaaact aataacggcc aggcaaacgc cgcaactgat gcgggccagg tagcccctga
    14161 cgcccgtgaa aatgtcgcgc caaataacgt cgacaataac ggggtaaata ccggttctgg
    14221 cggcacaatg ctgcattcgg atggttcttc aatgaacaat gacggaatga ccaaagatga
    14281 agagcacaag aacaccatgt gcaaagatgg tcgatgtccg gatatcaata aaaaggtaca
    14341 aaccggtgat ggcatcaata atgatgtcga taccaaaacc gacggtacca cgcagtaacc
    14401 ctgcaaaata gccaataatg ggagagcgga gtctctccct tttaattttt cacttctaaa
    14461 agcagtatga tgtcataaag ttaagtgaga ataattaagg gatgactcgt catggcgcac
    14521 tcacactcac acacgtcctc acacctgcca gaagataata atgctcgtcg cttgttgtat
    14581 gctttcggcg tgactgccgg gtttatgctg gtagaagtcg ttggtggttt tctttctggt
    14641 tctctggcat tgctggccga tgcgggtcat atgttgaccg atactgccgc cctgcttttc
    14701 gccctactcg ccgtgcaatt ttcacgtcgt cctcccacca ttcgccacac tttcggttgg
    14761 ctaagactga ccacgctcgc ggcgtttgtg aatgccatcg ccctcgtggt aattaccatt
    14821 ttgattgtct gggaggcgat agaacgcttc cgcacgccgc gtccggtcga gggcggcatg
    14881 atgatggcaa ttgccgtggc tgggttgctg gcaaatatac tttctttctg gttacttcat
    14941 cacggcagcg aagagaaaaa cctcaacgta cgagcagcgg cattgcatgt gctcggggac
    15001 ctgttgggtt cggttggggc tattattgcc gcgttgatta ttatctggac cggctggaca
    15061 cctgctgacc ccattctctc gatagtggtg tcgcttctgg ttctgcgtag cgcgtggcga
    15121 ctgttgaaag atagcgtgaa tgaattactt gaaggtgcac cggtatcgct ggatatcgct
    15181 gaactgaagc gtcgtatgtg ccgggaaatc ccggaagtcc gcaatgtgca ccatgtacat
    15241 gtatggatgg taggtgagaa gccggtgatg acgctgcatg tgcaggtgat cccgccacac
    15301 gctcacgatg ccttgttgga tcagatccaa cactacctga tggatcacta tcagattgag
    15361 cacgccacca ttcagatgga atatcaacct tgtcatgggc cagactgcca cctgaatgaa
    15421 ggggtgtctg gccattcaca tcatcaccat taatgggaca gcgcgcatga gcctctttca
    15481 cgtgcgctgt tgatccacat ccgactgccg ttgagcgcaa taaaggtcag gatgatgtac
    15541 tccagagaca tggcgtaaac gccctgaagt gcaaaaataa cgacgctaat cacgttaata
    15601 atcacccaca acagccagtt ttccacatac ttacgcgtca tcagaagcat tgccacgata
    15661 gataacacca tcatgcatga atcccagaac gggaaagcgt ccggttgcag ttcaggcatc
    15721 acaacctgta atcctaatgc ttgcatgatc atgactgcca cgcgggtcaa aaatgcaaac
    15781 accggattga taaataccgt catcagacca atcgaaacaa cgcaaaccgc caaccagctg
    15841 agcgccttcg gcaatggtaa ccagcgaatt ttcaactccg cctcgttctg actggtttgt
    15901 cgcgaccacg cataccaacc gtaaatattc gcggcaaaga aaaacacctg taatagcagg
    15961 ctggcataca gctgaatctg aaagaaaata atgccaaaca aggtgacgtt gatcaggcca
    16021 aagaagtagt tgctgatctt ctccagactg gcaaggccaa tacacagcaa cccggcgatc
    16081 gtgcctaccg cttcgatcca tgagagatca taaccgcctg ctcctattgg tatatgtacc
    16141 aggatattct gcacactaaa aaaatccatc tttcccccaa agcgtaacgt tacgccttat
    16201 tattcgttat ccacgtagtg tagccgcaaa atccagcata cgattgagcg gcaccagcgc
    16261 cctctctcgc agcctttcat caacatgaac ctcgtgattg cttccttcct gttctaatgc
    16321 ctctgcgatg gcctgaaggc cattcatggc catccacgga caatgcgcgc agctgcggca
    16381 ggttgcaccc tcacctgcgg ttggtgcttc cagtaactct ttatctggca ccgcctgctg
    16441 cattttgtag aaaatacccc gatcggttgc cacaataagc ctctgatgtg gcaatgtttt
    16501 cgcagcagcg atcagttgac tggtggaacc gaccgcatcc gccatatcga caatagcttg
    16561 tggtgattct ggatgcacca gtatggcagc atccgggtat tcttcttgca agcgggttaa
    16621 cgcctgagtc ttaaattcat catgcacaat acaggcaccc tgccagcata gaatgtctcc
    16681 acccgtctgt ttttgcacgt aacgccccag atgtttgtcg ggtgcccaga tgattttttc
    16741 acccaaacta tcaagatgat caataagttc gacggcaatg cttgaagtta ccacccaatc
    16801 tgcgcgcgct tttaccgcag cagaagtgtt ggcgtagacg acgacagtac gatcgggatg
    16861 ggcatcgcaa aatgcgttaa attcttcaac agggcagccg agatccagtg aacattcagc
    16921 ctgaagtgtc ggcatcagaa ttgttttttc cggactgaga attttggcgg tttctcccat
    16981 aaatctcacc ccagcgacta acaaagtaga agcgggatgc tttgcaccga agcgcgccat
    17041 ttccagagaa tcagaaatac agccaccggt ttcttctgcc agttgttgaa tttcgggatc
    17101 ggtatagtag tgggcaacca tcaccgcatt acgttctttt agcagacgtt ttatcttctc
    17161 gcggtaatac gctttttcat caatgcttaa cggcgtcggc ttcgggggga aaggataaat
    17221 cgccgtgtct ggatcaaaca ttacgctcat cttaccatct cgttttacag gcttaacgtt
    17281 aaaaccgaca ttagcgtaat attcgctgtt atcggtgtaa tttgttttat atgctaaaca
    17341 agatagtcga atggtgggga aaagtcactc gaattacgcc taattccacc gacgtagagt
    17401 tgcttgcaca gtaagctctg acgatgtcat caggtttaca aagtgaaatt gaggatgcct
    17461 gaatagcaaa aaagcgcctt tagggcgctt ttttacattg gtgggtcgtg caggattcga
    17521 acctgcgacc aattgattaa aagtcaactg ctctaccaac tgagctaacg acccatacgg
    17581 gtgttacctg aaagatttct actcggggcc aatctttaag attggtgtgt cgtgcaggat
    17641 gactcgcttc gcttgcccta cgggccgttg ctggcgcaac gttatccttc acgcttaaca
    17701 tctgagtttg atgttaaaat tggtgggtcg tgcaggattc gaacctgcga ccaattgatt
    17761 aaaagtcaac tgctctacca actgagctaa cgacccgagt ggtgggtgat gacgggatcg
    17821 aaccgccgac cccctccttg taagggaggt gctctcccag ctgagctaat cacccgataa
    17881 tgcgctggat actacaaact acttccaccg aacccatcgt aattagtggt gggtcgtgca
    17941 ggattcgaac ctgcgaccaa ttgattaaaa gtcaactgct ctaccgactg agctaacgac
    18001 ccggtggtgg gtgatgacgg gatcgaaccg ccgaccccct ccttgtaagg gaggtgctct
    18061 cccagctgag ccaatcaccc aatactacgc tggatactac aactaactat gttagtggtg
    18121 ggtcgtgcag gattcgaacc tgcgaccaat tgattaaaag tcaactgctc taccaactga
    18181 gctaacgacc cactttttcg ttgctttcgg tttgtttgat atcccgtggc aacggcggca
    18241 tatattactg atttcagact tgagcgcaac aaaaatttcg atgcagatca ctcaactgct
    18301 tatgattcgc acgacacgac cagaaataat gcaacttctg gtcgtgtgtt atgcattaca
    18361 tcgcgttcag acgtttttgt gcctgtttag cgccatcagt accagggtat ttactgataa
    18421 cctgctggta tacggctttc gcttttgcgg tgtcaccttt gtcctgcatg atgacgccga
    18481 ctttaaacat cgcatcagca gcctttggtg acttcggata gtttttcact accgaagcaa
    18541 aatagtacgc cgcatcatct tttttaccct tgttgtagtt taactgaccc agccaataat
    18601 tggcgtttgg caggtaagtt gaatcagggt aatttttgat gaaattctga aatgccacca
    18661 ttgcgtcatc ctggcgggat ttatcctgca ccagcgcaat agctgcattg taatccgtgt
    18721 ttgcatcgcc gcttttcacc ggcgcgccag cattcgcagt accagcatca gctgtcggcg
    18781 tcgttgatgc cgccgcaccg ctttgatcgc tgctggttga ttgcgccgct gcaccaccgc
    18841 tgctgaggct gtcgatctgc aacaggatct gcttttgccg ctccacgacc tgattcagtt
    18901 gatactgatt ttcctgaatc tgaccacgca gggaatcaat atcggattga ttatcagaaa
    18961 gttgttgctg gagttgggtt aaaagctggc tgtgagcatt agaaatacgc tcaagttgag
    19021 tgacgcggtc ttcgaccgag cctgagccga cactactgat tggtgcctga gcaaaagcgg
    19081 cccagggggc cgctatacca accagtaacg acagactcaa tagttgatgt ctgaagttac
    19141 tgctcatgca attctcttag taaaccagta ccgcacgacg gtttttggag tatgccgctt
    19201 cgtcatgacc cagtactgca ggtttttctt taccgtaaga aacgatggag atctggtctg
    19261 cagaaacgcc tttaccctgc aggtacatct taacggcgtt cgcacgacgt tcacccaggg
    19321 agatgttgta ttccggagta ccacgttcgt ccgcgtgacc ttctacggtg actttgtaag
    19381 acgggttgct acgcaggaag tttgcatgtg catccagcat ttgagcgaag tcagaacgga
    19441 tatcgtactt gtccagatcg aagtaaacga tgttgttctg ctgcagctgt tgcatttgca
    19501 gacgagcctg ctcttcggaa gacatgttgc cgttgccgcc gttcgcatcc ataccagtgc
    19561 cggcacccag catgccttcg ctgccgtcat tgctggcgtt cttgttggaa gaacatgccg
    19621 caattgccat aacaggcaga gcaatcatca gccctttcag cactttgttc agttgcattt
    19681 caatgattcc tttactattc aattaattat tatcacagat acggcgacca ggcagggaat
    19741 ttgacctgtc catcagttgc cggaagacgc gctttgaaac gcccatctgt agaaaccaaa
    19801 ttcagcacgg atcccatccc ctgagaagag ctgtagatta ccatagtgcc attaggtgcc
    19861 agacttggcg tttcatccag gaacgtggac gacagaactt gtacgcctcc cgttgccaga
    19921 tcttgtttgg caatgtgctg ctgcccacca ttggagctga ccattaccat aaatttaccg
    19981 tcgctgctga catccgcatc ctggttctgc gaaccttccc aggtaatacg ttgtggcgca
    20041 ccgccgttga tattcacttt ataaacctgc ggacgaccgg cctggtcaga agtaaatgcc
    20101 aggttctggc tatccgggaa ccaggtcggt tcggtattgt tactgcgacc atcagtcacc
    20161 tggcggatct gaccagaagc caaatccatt acgtacaggt tcagactacc ggttttcgac
    20221 aaggcgaatg ccagtttgct gccgtctggc gagaatgcag gtgcaccgtt gtgacgcggg
    20281 aatgaagcca cctgacgtac agcgccattt gccagcgtct gaataaccag cgcggaacga
    20341 ccgctttcga aggtcacata agccagttta gaaccgtctg gtgaccacgc cggagacatc
    20401 agcggctgcg gtgaacggtg aacgacaaac tggttgtaac cgtcatagtc agatacgcgc
    20461 agttcatacg ggaactgacc gccgttggtc tgaacaacgt aggcaatacg ggtacggaac
    20521 gcacctttaa tgccggtcag tttttcaaac acttcatcac tggcggtatg accagcataa
    20581 cgcagccact gcttgttcac tttgtacgag ttctgagcaa gtacagtacc cggtgcgccg
    20641 ccagtgtcaa caagttgata agcaacattg taagaaccat ccggattcgg agtgacctga
    20701 ccgacaacta cagcgtcaat gcccagtgcg gaccatgcag atggttgtac ttcctgcgca
    20761 ctacccggct gctgtggcag acgagcgcga tctaacggat taaatttacc gctgttacgc
    20821 aagtcagcag caacgatgcc gccaatatct tcaggtgccg caccaggccc cgcccactgg
    20881 aaaggaacaa caccaatagg acgaccggaa tctacaccgc tgtcgatcac aatgcggact
    20941 tcagcatgca gaactgatgc ccacagtatg agaaaaccaa atgctactcg taatgcctgc
    21001 ttcatcatat ctcccttatc tggaccgatg gcccacgata atttagcaga atgttaacaa
    21061 actaaaatac acaaaactac cagaaccccg tggcaaccgg tgcctgatgt tgaccgtccg
    21121 aacagtcaac atcgcgatta cggtttgaag tccaatggcg cgtttttgaa cacttcatat
    21181 actgcctggc ttggtggttt cgggatcttc gcaagtttag ctgctgccaa cgcagcctga
    21241 caaagtgcgg gatcgccacc ttcaggtttg atatccagta acataccatc gggtgccagt
    21301 tttatgcgca gcgtacaggt tttgcctgca taggacgatg cgtcatagaa cttactttcg
    21361 atagcagatt taatctgccc ggcatagtta ttgatatcgg cccctgatgc gccattgttt
    21421 ttagaattac cactcccggc aggcgaagca ttgttccctt tcgcccctcc ccccgttttc
    21481 ggtgcattct taccagagct tagctcaccg aaaatatcat ctgcctctgc ggcggctttt
    21541 tctgccgctg ctttcttatc agctgctgcc ttttcagcag ccgctttttc tgctgctttt
    21601 ttgtcggctg cagctttctt atcagctgca gccttttcag cagccgcttt cttctcagct
    21661 tctgctttgg ctttttcagc agcttcagtt gccgctttct ttcttgcttc agctgcagct
    21721 gcttctgccg cttccgcttt cttcttcagt gccgcagcgg ctgcctcggc ttttttctgc
    21781 gctgcggctt tggcggcttc tgcttctgct tttttctttg cgtctgcagc cgctttcttc
    21841 gctgcttctt ccgcagcttt agcatctgct tcggccttcg ctttagcatc tgccgccgct
    21901 ttcgctgccg cctcttcagc ttgcttctgc tttaactcgg cctgttttgc ggcttcttca
    21961 gcctgctttt tctgctcctg agccgctaac cgctctttct caagttgctt caggcgttcc
    22021 tgttcagccg cttgtttctc acgcagttct tcagcagcct gctgttcctt catcttgcgc
    22081 tgttcatcag aacgcttcgc gcttgattcc tggctttgca tgcgtttgta ctgctcaact
    22141 accgcacctg aatcaaccat gacagcgtcg atggacgaac caccgccgcc tccggctgaa
    22201 gcttctatat tctcatcgaa cgaactccag atcagcgccg caaataagat gacatgcagc
    22261 actgctgaaa taattatcgc ccgcttgagc ttgtcgtttt gttcggttgc ctttgacact
    22321 ctcggtttcc aaaaactgtt cgcctgttac ccgctctctt tcaagcaagg gaaacgcaga
    22381 tgtttagata ggctgcgtca ttaaaccaac cgatttcaca cccgcactat gtaacaagtt
    22441 cagtgcttta attatttcat cgtaaggcac atcttttgcg ccaccgatca gaaagaccgt
    22501 tttcgggttg gccttgaagc ggctggacac ttccgccacc acctgctctg gtggtaaacg
    22561 ctccaggcga tctttctcaa ccaccacggt gtactgacca ataccagaca cttcaacaat
    22621 cactggcgga ttatcgttac tgctcaccgc ctgtgattca gtagcgtctg gcagatcgac
    22681 ctccacgctc tgggtgatga tgggcgctgt cgccatgaag atcagcaaca gcaccagcag
    22741 tacgtccagc aacggtacaa tgttgatttc ggacttaagt tcgcgacgac ctcgtccacg
    22801 cgctctggcc atgacttacc ccttattgct ctcgctaacg gtaaacgcct ggcggtgcag
    22861 aatcgcggta aactcttcca taaagttgtc gtaattcagt tccagtttgt ttacgcgctg
    22921 gttgaggcgg ttgtaggcca taactgccgg gatagcggca aacagaccaa ttgcagtcgc
    22981 aatcaacgct tctgcgatac cgggcgcaac catttgcagt gttgcttgtt ttaccgcccc
    23041 gagggcgata aaggcatgca tgatccccca gaccgtacca aacagaccaa tatacgggct
    23101 gatggagcca accgtaccga ggaacggaat gtgcgtttcc agattttcaa gttcacggtt
    23161 catggagata cgcatagcac gcgacgcccc ttccactacg gcttccggcg catggctatt
    23221 ggcacgatgc aggcgcacaa actctttgaa cccgctgtaa aatatttgtt ccgaaccagt
    23281 cagattatcc cgtttcccct gactctcttg atagaggcga gagagttcga ttccagacca
    23341 gaatttatct tcaaacgctt cggcttcgcg cgccgctgcg ttaagaatac gggtccgctg
    23401 gataataatg gcccaggatg cgattgaaaa accaatcaaa atcaacatga taagtttaac
    23461 cagaaggcta gccttcagga acaaatcaag gatattcatg tcagtcactg cttaaactcc
    23521 gcgacaatag acttgggaag cgcacgaggc ttcattttga gtgggtcaac gcaaacaacc
    23581 agaacctctg cttcattcag caaagtattc tcggcgttga caatacgttg cgtgaaaacc
    23641 aaagaggtgc cacgcattga tgttatttca gtctgtattt cgagcatatc gtcgagccgc
    23701 gcaggtgcgt aatattccac cgtcatttta cgtaccacaa aggcaacgcg ttcagccatc
    23761 agcgcctgct gactgaagtg atgatgacgc agcatctctg tgcgtgctct ttcataaaaa
    23821 gcgacgtaac tggcgtggta caccacacca ccggcatcgg tatcttcata gtagacgcga
    23881 gccggccatc gaaacagcgt tgtattcact ttacatcccg gtaatgcaac aaaagttaga
    23941 gcttttaaac gctgctacta tacgcgcgcg attgaggttt gggaatgagg gcaagttaag
    24001 ggagcgtaaa aatttatggg cctggagcgg cccataattt tttaaagaga attctgattt
    24061 aaaagaagaa gaaaatcagc ccgataatga gaacaatatc ggcaagcaat gggcaaaaaa
    24121 tcccttgcca aagaaccttc tgcggacgaa agcccacgcc gtgaatcaca ccagcacaga
    24181 cggcccacat cagcaataaa ccatgccaga tttccagttc actggtcttc gcggcaaaac
    24241 gagatgggtc ccaaaacata catcctgcta acagaagcgc catcacgaag gaaagcgccc
    24301 gcagggggcg cttgtccatt accgcataca aggtcgcgat aatcttactc atcagatgtc
    24361 ttcttgaccg gctttgcctg attcgacgtg ttcaagcgcc agcgcggtga ttaccccaaa
    24421 cgaacaggca agaagcgttc ccagaatcca tgcgaaatac cacattttta gctccttact
    24481 tagtacagag agtgggtgtt acgttcaata tcttctttgg tgatacgacc gaacattttc
    24541 cagtaacacc aggcggtgta gagcagaatg atcggtacca gaaccaccgc aacccaggtc
    24601 atgacgttaa gcgtcagctg gctggaagtt gcatcccaca ttgtcagact tgcgttcatc
    24661 atggtgctgg acggcatcac aaacgggaac attgcgatac cggctgtcag gatgatgcag
    24721 gccagcgtca gggaggagaa cacaaacgcc cacgcggctt tatccatacg tgcagtcagg
    24781 atggtcagca gcggcagaac cacacccagt gccggaatag cccacagaat tggcgtgttg
    24841 ttgaagttaa ccagccatgc gccagcttca cgaaccactt ctttattcag tgggttagag
    24901 gctgcgtaat ggtccattgt cgatttcacg acataaccat cgataccgta catcacccat
    24961 acgccagcca gtgcgaaaca gaccagtgtc accagcgcag ccacctgagc cgttgcacgg
    25021 gtacgcaggt gcagttcgcc cacggtacgc atttgcagat aggttgcgcc ctgagtaatg
    25081 atcatcccta cgctcaccac gcctgccagc aggccgaacg ggttaagcaa ctggaagaag
    25141 ttaccggtgt agtacagacg cagatattca tcaacgttga acggtacgcc ctgcaacagg
    25201 ttaccgaacg caacaccaat taccagcggc ggaacgaagc taccaatgaa gatgccccag
    25261 tcccacatgt tacgccagcg ggtttcttca atcttggagc ggtagtcaaa accgaccgga
    25321 cggaagaaca aagacgccag cacgaggatc atcgccacat agaagccgga gaacgcagcg
    25381 gcatagacca tcggccaggc agcaaagagt gcgccgcccg cggtgatcag ccaaacctgg
    25441 ttaccgtccc agtgtggtgc aatggagtta atcataattc gacgctcggt gtcgttacga
    25501 ccgaggaaac gggtgagcat gcccaccccc atgtcgaaac cgtcagtgac tgcaaaacca
    25561 atcagcagaa cgccaaccag cagccaccag ataaaacgca atacttcata atcgatcatt
    25621 tgacgactcc tgtcttagcg tgccggctga gtagtcgtgg aagactgctc aaagtgatag
    25681 cgaccggttt tcaggctgct tgggccgagg cgtgcaaatt tgaacattaa gaacaattct
    25741 gccaccagga acagggtata caggccgcaa atcagcacca ttgagaagat gagatcgcct
    25801 gcggtcagtg acgaattcgc cacagctgtc ggcagcactt caccgatagc ccacggttgg
    25861 cggccatatt cagccacgaa ccagcccgct tctacagcaa tccacggcag cggaataccg
    25921 tacagcgcgg cgcgcagcag ccattttttc tcgccaatgc ggttgcggat gacactccag
    25981 aaagagagcg cgatgattgc cagcagcagg aagccacacg ccaccataat acggaacgcg
    26041 aagtacagcg gcgctacacg cggaatggag tctttagttg cctgttgaat ctgcgcttca
    26101 gtcgcatcag ccacgtttgg cgtatagcgt ttcagcagca gaccgtaacc gaggtctttc
    26161 ttcatgctat tgaactggtc acgaaccgcc tggtcggtag aaccagaacg cagttgttcg
    26221 agcagagagt acgccttcat cccgttacga atgcgttctt catgctgcac catcagctct
    26281 ttcaggccga taaccggggt atccacggaa cgcgttgcaa tgatgcccag tgcgtaaggg
    26341 atctgaatcg caaatttgtt cgtctcctct tcctgatcag gaatgccgaa cagagtaaag
    26401 gcagcaggcg caggttgcgt ttcccactcg gcttcaatag cagccagttt ggttttctgc
    26461 acgtcgccca tttcgtagcc ggattcatca cccagaacaa taacagacag aacagcagcc
    26521 ataccgaagc tggcagcgat agcaaaggag cgtttagcga aggcgaagtc acgacctttc
    26581 agcatatacc atgcgctgat accgaggatg aacatcgcgc cagtcacata accagacgct
    26641 acagtgtgaa cgaatttcac ctgagcaacc gggttaagca ccagctcgga gaagctcacc
    26701 atctccatac gcatagtttc aaagttgaaa tcggacgcga ttgggttttg catccagccg
    26761 ttcgcaacca gaatccacag tgcggacagg tttgaaccga gcgccaccag ccaggtgaca
    26821 cacatatgct gaactttacc cagacgatcc caaccgaaga agaacagacc tacaaaggtg
    26881 gattcgagga agaaggccat cagaccttcg attgccagcg gcgcaccgaa gatatcccct
    26941 acatagtggg aatagtaaga ccagttagtc ccgaactgga actccatggt cagaccggta
    27001 gccacaccca gagcgaagtt gataccaaac aacttgcccc agaacttggt catatcttta
    27061 taaatctgtt tgccggagag gacgtagacc gtttccataa tggccagcag gaacgccata
    27121 ccgagcgtca gtggcacaaa aaggaagtgg tacatcgcgg tcaaggcaaa ctgtaagcgc
    27181 gacagttcga ctatatctaa catcatgact ccttgctcat cgcatgaaga ctccgagagt
    27241 gaaccccgtt agaaagggtc acacgcatgc cccaatagaa atttgtttga acactttcat
    27301 cataccatgt gaatgcacac aaaaacggcg taaagaaagg ttgcaaacat gttaataaaa
    27361 actcaaattg atcccacgta tatattacgc cgcaaaatcc ttacaataaa caggtttttg
    27421 ttgaagcaaa tttgcatttt tcgacggtga tcaatttata gctaaattac cgcctttcag
    27481 ccaatttgat cgagaacaat ttatctcttt ttgatgccca tttccaagac ttatacattg
    27541 ataaatatca attcctacaa attatgttaa tcatgtttca ataaggtaac tttagtgaca
    27601 tttatgttta aaatgtgtga gttataaggc tgaaattagt ttcggttggc aattaaagat
    27661 aaaaagagac gaagcaaaaa cagcacggtt gaccttaatt ctttttttgg tcactggcta
    27721 atacgacgca gagtttcagg attactaata aaggcataaa tccacccccg ccgatattaa
    27781 catttaatta acttataatt atattataat taactcaccc agggttatta ttttgttaaa
    27841 aataaagcca catatacgtg gcttgagagt gaagataaac gcaaaattac ctgatgcgct
    27901 acgcttgcca gtgtctacat catctctgca atatattgaa tttgcctgct tttgtagacc
    27961 gaataaagcg ttcatgccgt atccggcatg aacaaagcgc cctttgtcaa caatctggcc
    28021 gcgcatatgt ggcttcggtt tgattgctat tcaggcaagc cggtaactga acgtccgtga
    28081 ctggccgggt aaaaaaggcc ccgatagatt tgaaccttga ttttcctcgg tggtaatgtg
    28141 ttcatccatc atcgtttctg agcaagaaat cacctcgcga ctgaaagcaa cagtcgcatc
    28201 acaggttgct gattcagccg gattaaacag ccgtaaaatc acttcttgtc ggtcttcagc
    28261 tttcttaagt gcgcttatca ggcatcccac tgggggcatt ttcaacaaac tataactttc
    28321 cggcacgttg aatccggctt tgttgagctt catcgcatcc catgggattt tgttgtaaca
    28381 ctgtactgga gtcagccatg ctcgcgcctg ctgagctaca ccagcggcgg ttggcgtacc
    28441 ggtataactc aataaactta ggcgacaaga aagcagacca cgtagttgtg agtccgggac
    28501 tggcatttta attcccgaag gccgcccagg ccttaaaagc agatcttctt tgcccagtaa
    28561 gcccacgcca cgcagcaacg taatggcaaa ggttttcttc tcttcaccga tgacttcaaa
    28621 ttcacgtaac ccttcgctaa agacagccat gccgttacgc ccttcctgta aggcaacata
    28681 gttgagcata ttccataccg gaaccggcgc ttctttccag ccttcttgct gccagttgtt
    28741 cattgcactg tcgttcacgg ggcgcgttag cgaaccaaac tgcgtatctg ccagaacact
    28801 gtcggtgtta aaaggtgtag ggaccaggac acgaaggcga tgatcgtcag cctggttatc
    28861 aaggttgata tccacatcaa tacgcctgct gttatgacta agagtgacaa ccaacaccac
    28921 ccctactctg ccagtggatt gccgggcgct gcgttctgac aaattgagcg gcactgccat
    28981 gtcatagcgg ataacagccc tgctctgcca ggcttcatga ataatatcgc attgcggttt
    29041 cgcgttcgct gcggtaatta cccactcttc ttttgcgggt gaatagtcat attcatcacc
    29101 atcatcagag
//
LOCUS       DAJVUP010000033        28863 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.033, whole genome shotgun sequence.
ACCESSION   DAJVUP010000033 DAJVUP010000000
VERSION     DAJVUP010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28863
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.033"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(457..2148)
                     /gene="fruA"
                     /locus_tag="OQQ75_001377"
     CDS             complement(457..2148)
                     /gene="fruA"
                     /locus_tag="OQQ75_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIBC"
                     /protein_id="HCS1975759.1"
                     /translation="MKTLLIIDANLGQARAYMAKTLLGAVARKAKLEIIDNPNDAEMA
                     IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASG
                     PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD
                     LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTE
                     GKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS
                     AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS
                     TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV
                     LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV
                     ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG
                     AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA"
     gene            complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="OQQ75_001378"
     CDS             complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="OQQ75_001378"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HCS1975760.1"
                     /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN
                     VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE
                     VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ
                     CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA
                     HVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR
                     LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN"
     gene            complement(3103..4233)
                     /gene="fruB"
                     /locus_tag="OQQ75_001379"
     CDS             complement(3103..4233)
                     /gene="fruB"
                     /locus_tag="OQQ75_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HCS1975761.1"
                     /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML
                     AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS
                     SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV
                     ASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS
                     RAANAFAVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT
                     SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL
                     MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA"
     gene            4601..5782
                     /gene="setB"
                     /locus_tag="OQQ75_001380"
     CDS             4601..5782
                     /gene="setB"
                     /locus_tag="OQQ75_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter SetB"
                     /protein_id="HCS1975762.1"
                     /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD
                     EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN
                     RNYFVLLFVGVFLSSFGSTANPQMFALTREHADKTGREAVMFSSFLRAQVSLAWVIGP
                     PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMQKELPLATGTVEAPRRNRRDT
                     LLLFVICTLMWGSNSLYIINIPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA
                     KRLGKRFLMRVAAVGGVCFYAGMLMAHSPAILLGLQLLNAIFIGILGGIGMLYFQDLM
                     PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRTKD
                     V"
     gene            complement(5779..6033)
                     /locus_tag="OQQ75_001381"
     CDS             complement(5779..6033)
                     /locus_tag="OQQ75_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HCS1975763.1"
                     /translation="MECRPGCGACCTAPSIFSPIPGMPDGKPANTPCIQLDEQQRCKI
                     FTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAS"
     gene            6188..6760
                     /gene="yeiP"
                     /locus_tag="OQQ75_001382"
     CDS             6188..6760
                     /gene="yeiP"
                     /locus_tag="OQQ75_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P-like protein YeiP"
                     /protein_id="HCS1975764.1"
                     /translation="MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFS
                     DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE
                     ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST
                     GLVIQVPEYLSPGEKIRIHIEERRYMGRAD"
     gene            6983..8449
                     /locus_tag="OQQ75_001383"
     CDS             6983..8449
                     /locus_tag="OQQ75_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS1975765.1"
                     /translation="MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLT
                     DRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLN
                     AKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS
                     APGILVEALKRRRERGLTPFTVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHV
                     SFPGTMVDRIVPAATDESLAEISQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVA
                     GVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAHISDCMQDRAFRHAARTLMLNE
                     QAPTLQIKDVDLTQYADKLIARFANPALKHKTWQIAMNGSQKLPQRMLAGIRIHLGRE
                     TDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLRE
                     VFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI"
     gene            8567..9553
                     /gene="yeiR"
                     /locus_tag="OQQ75_001384"
     CDS             8567..9553
                     /gene="yeiR"
                     /locus_tag="OQQ75_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding GTPase YeiR"
                     /protein_id="HCS1975766.1"
                     /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWTVLVNEFGEVGI
                     DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL
                     DLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRATPE
                     SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA
                     ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE
                     GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA"
     gene            9592..10305
                     /gene="lpxT"
                     /locus_tag="OQQ75_001385"
     CDS             9592..10305
                     /gene="lpxT"
                     /locus_tag="OQQ75_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo(2)-lipid A phosphotransferase"
                     /protein_id="HCS1975767.1"
                     /translation="MIKNLPQIVLLNIVGLALFLSWYIPVNHGLWLPIDADIFYFFNQ
                     KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTA
                     VVLNQLGQALIPVKRASPTLTFTNINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF
                     MWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR
                     LITFFDKSLPGKNKHFQNK"
     gene            10717..11283
                     /gene="mepS"
                     /locus_tag="OQQ75_001386"
     CDS             10717..11283
                     /gene="mepS"
                     /locus_tag="OQQ75_001386"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional murein DD-endopeptidase/murein
                     LD-carboxypeptidase"
                     /protein_id="HCS1975768.1"
                     /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG
                     SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF
                     REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST
                     SSGVIISSMNEPYWKKRYNEARRVLSRS"
     gene            11464..13020
                     /locus_tag="OQQ75_001387"
     CDS             11464..13020
                     /locus_tag="OQQ75_001387"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1975769.1"
                     /translation="MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD
                     TLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK
                     KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
                     VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA
                     GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQ
                     FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL
                     IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD
                     MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET
                     ITSPVLDAVLTLAKRLNMLTVAEGGETPEQARWLSEPGVNFMQGYWISRPLPLDDFVR
                     WLKKPYTPQW"
     gene            13102..14916
                     /locus_tag="OQQ75_001388"
     CDS             13102..14916
                     /locus_tag="OQQ75_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311096.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1975770.1"
                     /translation="MIVRILLLFIALFTFGAQAQAIKESYAFAVLGEPRYAFNFNHFD
                     YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI
                     AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTV
                     KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSW
                     KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND
                     AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDF
                     EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPPEVFTQIYQPPV
                     SKGDGYDRDNLLKADTLLNEAGWVLKGQQRVNATTGQQLSFELLLPASSNSQWVLPFQ
                     HSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRLWRAMPWPSSDLQISWSSEYINST
                     YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW
                     WDKFSHPAVRPVYSLGIDTWWYDVNKAAKLPSARQQGE"
     gene            14917..16011
                     /locus_tag="OQQ75_001389"
     CDS             14917..16011
                     /locus_tag="OQQ75_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter permease YejB"
                     /protein_id="HCS1975771.1"
                     /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF
                     GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER
                     YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV
                     HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWY
                     QKITDYLWHITLPVLATVIGGFAALTILTKNSFLDEVRKQYVVTARAKGVSEKNILWK
                     HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL
                     YIFTLIGLLLNIVSDISYTLVDPRIDFEGR"
     gene            16011..17036
                     /locus_tag="OQQ75_001390"
     CDS             16011..17036
                     /locus_tag="OQQ75_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1975772.1"
                     /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND
                     KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA
                     TSINFATDKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL
                     AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL
                     VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL
                     TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDA
                     FDPNKAV"
     gene            17038..18627
                     /gene="yejF"
                     /locus_tag="OQQ75_001391"
     CDS             17038..18627
                     /gene="yejF"
                     /locus_tag="OQQ75_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter ATP-binding protein
                     YejF"
                     /protein_id="HCS1975773.1"
                     /translation="MTQTLLAIEDLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES
                     GSGKSVTALSILRLLPSPPVEYLSGDIRFRGESLLHASDQTLRGVRGNKIAMIFQEPM
                     VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG
                     ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS
                     IVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL
                     DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR
                     LINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH
                     QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD
                     EPTSSLDKTVQAQILTLLKSLQQKLQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG
                     PCARVFAAPQQEYTRQLLALS"
     gene            complement(18631..18975)
                     /locus_tag="OQQ75_001392"
     CDS             complement(18631..18975)
                     /locus_tag="OQQ75_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975774.1"
                     /translation="MTSLQLSIVHRLPQNFRWSAGFAGSKVEPIPQNGPCGDNSLVAL
                     KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV
                     AIAEPFSNYNPF"
     gene            complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="OQQ75_001393"
                     /pseudo
     CDS             complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="OQQ75_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311101.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Bcr"
     gene            complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="OQQ75_001394"
     CDS             complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="OQQ75_001394"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HCS1975775.1"
                     /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE
                     HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD
                     IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL
                     TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE
                     YRPLTEEEIASVV"
     gene            21363..23123
                     /locus_tag="OQQ75_001395"
     CDS             21363..23123
                     /locus_tag="OQQ75_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HCS1975776.1"
                     /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL
                     ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR
                     NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW
                     IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS
                     NGLFSEADLNRELKKQQRITPHIISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAED
                     AALITGDTPGAERDVLIEDFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY
                     QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT
                     FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
                     CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF
                     RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ
                     VREKVFDYEGRFRRAHELRG"
     gene            23248..23532
                     /gene="rplY"
                     /locus_tag="OQQ75_001396"
     CDS             23248..23532
                     /gene="rplY"
                     /locus_tag="OQQ75_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HCS1975777.1"
                     /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH
                     DKVMNMQAKAEFYSEVLAIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA"
     gene            complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="OQQ75_001397"
     CDS             complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="OQQ75_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HCS1975778.1"
                     /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH
                     RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF
                     VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN
                     PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE
                     RQNVRQQVYSYCNEQLQAGEEIELESLSKELAGVSEVSFTKFAAEKGYELEESFPADR
                     STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG
                     N"
     gene            24860..25087
                     /locus_tag="OQQ75_001398"
     CDS             24860..25087
                     /locus_tag="OQQ75_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YejL family protein"
                     /protein_id="HCS1975779.1"
                     /translation="MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL
                     INTSIAPAQRQAIANSFARALQSSINEDKAH"
     gene            25107..26867
                     /gene="pbgA"
                     /locus_tag="OQQ75_001399"
     CDS             25107..26867
                     /gene="pbgA"
                     /locus_tag="OQQ75_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin transport protein PbgA"
                     /protein_id="HCS1975780.1"
                     /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP
                     TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL
                     IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL
                     RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL
                     EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE
                     KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL
                     NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRPQSDEQTATQWINWLGRYAQEDNR
                     WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAG
                     RGIPLSEDEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP
                     ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE
                     KPQLSLLLQVLTDEKRFIAN"
     gene            26942..27018
                     /locus_tag="OQQ75_001400"
     tRNA            26942..27018
                     /locus_tag="OQQ75_001400"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26976..26978,aa:Pro,seq:ggg)
     gene            27237..28478
                     /locus_tag="OQQ75_001401"
     CDS             27237..28478
                     /locus_tag="OQQ75_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000101915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1975781.1"
                     /translation="MARKTPPLTTVQIKAARPAEKEYTLQDGGGLFLLVKPSGSKLWR
                     FSYYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALISAGTDPQGHEKKKREAEARR
                     QGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVL
                     TPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPE
                     QLPELMQALSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMK
                     MRRDHVIPLSGQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGV
                     LVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGE
                     FVEAAATGVTLASGKRGIRAV"
BASE COUNT         7051 a         7497 c         7184 g         7131 t
ORIGIN      
        1 agcctataat tacgacataa tccttttcgc gcatagcaca tcctctggta aaaaattacc
       61 aaccctgtca atccacaaga atatagatac tgcaaagacg gtttaaacat gtgttcatat
      121 ttaaacatgt gctcatagca tgcatgtttt acgtaaagta aattaccgcc agagaggcaa
      181 aatgggcaga tttgagcagg ctcacaaaat gcgattaaat gcctgaatta caaaagcgag
      241 gaatttgtga cgggatgcac agaacgggaa caataaaaaa ggcagaaaat aatctgccct
      301 tgaggaaata accttagtgt ttgatgaacg tttcaagttt ctactgaaag ataaaaccat
      361 ttaaattcat aaaattacat tcacaaaccg gtcattctct ttgcgctcat caaatgttac
      421 agggcaggaa atttctgccc tgtaacacac cttttattac gctgctttcg ctactgcgtc
      481 cacttccgga cgtttcagga aggcataggc caaacccgcc accagcgtac cggcaataat
      541 tgctaccagg taacccagta ccggcgtaat agcgccaggg atcagcagaa caaacagacc
      601 accgtgcggt gccatcagtt tcgcaccaat cgccattgag attgcgccag tcagcgcccc
      661 acccacgata cagcacggca gcacacgcat cggatcacga gcagcaaacg gaattgcacc
      721 ttccgaaatg aagcacagtc ccaataccag agcggctttg ccaccttcct gctgcgcttt
      781 gtcgaatttg cgacgcgcca ccattgttgc cagacccatt gccagcggtg gcaccatacc
      841 tgccgccata atcgccgcca tcgggccata ggtttgagta ctcagcagac ccacaccgaa
      901 tgcgtacgct gctttgttta ccggaccgcc catgtcagta cacatcatgc caccgaggat
      961 cgcccccagc agaaccgcat tcgcagtccc catggtctgc agccagtgag tcagcccttc
     1021 gagaatgcca gcaactggtt taccgatcag gtagatcatc gccagaccga ccaccagact
     1081 ggaaattagc ggaatgatca ggatcggttt cagcgcctcc atactctgtg gcagtttcag
     1141 ttgcgtactg attaacttcg caatgtaacc agccaggaag ccagcaatta taccgccaat
     1201 aaagccagaa ccggtgctga ccgccagcat accgccaatc agacccggcg tgaggcccgg
     1261 acgatcggca atggagaagg caatataacc tgccagtacc ggcaccatca gcgcaaaggc
     1321 tgaaccaccg ccaatctgca tcagcgccgc tgccaacgta cccggctctt taaacgcttc
     1381 gataccaaaa gcaaaagaaa gcgcgataca cagaccacct gcgacgacca tcggcagcat
     1441 ataagagacg cctgtcagca agtgacggta agcgcctgca ctctctttct taccttcagt
     1501 ggtcgccgtt tgagctttgc ccgccggttc atacggcgtt gcttcagcaa ccgctttatc
     1561 cagttcctgc gcggttttct tcagcgccag accggtagag gtacgataca tcggtttacc
     1621 agcaaatttc gccagatcca cttcgatatc tgccgccaca atcaccagat ccgctgctgc
     1681 gacttcttca ggggtgattg cattgcccgc gccaacagaa ccacgggttt caactttcac
     1741 ccaccagcca cgttttttcg cttcggtttc aatggcttca gccgccataa aggtgtgtgc
     1801 tacgccagtc gggcaagcag tcaccgcaac tacgcgtttc ggaccgctgg cagcaaccgg
     1861 tgctgtcgca gcgaccggcg cagtgtaagg tttcgcatgg cctttggctt cactcaggaa
     1921 cagctcaggg tgcgcaactg cccgggaaat atcacccagc cagacatttt taccgttcag
     1981 cgcgctgtca ttcgggatgg aatcaccgag aacaatcgcc atttctgcgt cgttcggatt
     2041 gtcgatgatt tccagttttg cttttcgcgc caccgcgccc agcagggtct tcgccatata
     2101 ggcgcgtgcc tgaccgagat tagcgtcaat aatcagcagc gttttcatta tgcctctcct
     2161 gctgtcagtt aaaaggttgt aagtcgacgc gcgccatcat tgcggccaac tgcggacgat
     2221 cggtaatacc cacattgctt tgacttaccg ccagggctgc aacagctgtc gccagacgca
     2281 gtgtgtgttc actggattca cgcatcagca agccataaat caggccacca accatagaat
     2341 cccctgcgcc aacggtgctt acgacatcga ctgacggtgg tttggcgatc cattcgccgg
     2401 aggcattaac ccaaagcgcg ccttcggcac ccagtgaaat aacaacatgc gcaatacctt
     2461 gttcacgtag cgcatgtgca gcttcaatca catctttcat ttcaggcagt ttacggcctg
     2521 cccaaatttc caactcgcgg cggttaggtt tcaccagcca cggtgccgct ttcaaacctg
     2581 ctactaacgc ttcacggcta ctatcaaaga taatgcaagg acactgacta cgcaggcgag
     2641 tcatccagtc ggtgaacgct tccgggctga cgcctgacgg taagcttccg ctgacacaga
     2701 ccatatcgaa ctgaccgagc cagctcagag aatcagtcac aaagcgttcc cagtcggcgg
     2761 gggtgacttc aaaacccgag aagttgaagt cggtcacttc gccgtctttt tccgtcagct
     2821 taacgttaat tcgggtgcgc ccctgtacaa cctggaaacg gttggcaatg cccagctcgc
     2881 tgaacagttg ctgaaaacca tcctgattgt ctttacccag gaagccgcca acggtgacat
     2941 caattcccag gtcttttaat actttggcca cgttgatgcc tttacccgcc gcatgcagac
     3001 cggtggtttt caccaggttc acttcgccgc gttcaatttc cgggcagaaa ccaacaaggt
     3061 cataagccgg attaagggtg atcgtagcaa cacgtctgct cattatgcgc cctccccaag
     3121 accagcagcg atagcgtcgc caatggcttt cagcgcctgt tcagcatctg caccctgggc
     3181 ggtaaagcgt aggcgatgac ctttcttaac gccaagtgcc acaactttca tcagactacg
     3241 tccgtttgcc ggtttgccgg tgccatcaag gtttgtcacg gtaatatcac tgttaaattg
     3301 tttaatggta ttgaccagca tggtacctgg acgagcatgc aggccgtgtt cattgcgcac
     3361 cacaaactcc gcgcttaaca cgtcgtcggt cggcgcatca tcgctggtca gcagcgccag
     3421 caacgttgcc gcatctgctt tcagcaagcg gtcagcttta ttgtcgagca ataaatcagc
     3481 gagacgctta agaaccgcga tgggctgatc gtcattcatc gccacactca ccagcatggc
     3541 tgccgtttcg ccgtccacag caaaagcatt tgccgcacgg cttaccgcaa tcgcgctacg
     3601 cagattgcct tcggcgctat cgctcagcca gataccctgt ccgagattca gcggttgttc
     3661 attgatggct ttggtgacga aagtggcgtc aactgccccc gcctctttca gacgcgcagc
     3721 gttcagcgcc tgaagagtca gcagatcgct ggcgacgata tccagcgtca gcatttcgtt
     3781 gtcgagcttc agctgctcac tctgcttttc gcccatcagt aatgcgcgaa gttcttctgc
     3841 tgttgttgct gacttcagtt gttcagcaac ggaatcatcg ctcagtacgt gggtcagctg
     3901 gcgtagcagg cccagatgtt catccgagct ggcagcaata ccgattgcca cgtacgctac
     3961 ctgaccgtca ccccaggtga cgccttccgg gaactgaaat acctgaacgc cggttttcag
     4021 cacctgatcg cgggtgtcgg tagtgccgtg tggaatagca ataccattgc cgaggaacgt
     4081 tgaggtttgc tgttcgcgcg ccagcatgcc attgacgtag ccttctgcta cattaccggc
     4141 ctgcaccagc gccgcagcga cctggcgaat cgcctcttct ttgtctccgg ccttttcgcc
     4201 cggatggatg tcctgtacgg ataactggaa catagttctc ctctcttgct gaattgaaac
     4261 gattcagcct ctatgagaaa aaaagcgcca acctggctta gggttaaaga caagatcgcg
     4321 ctgaaacgtt tcaagaaagc ataatacttc tgtttcagca cgcaaggaaa gccgtaaagt
     4381 tatgagcaaa agtttgatgt gctgcacatt tttttgtcat ttttcctaat tgctgatggg
     4441 aaaatccgtt atcagcaatt tcatttcagc agcgtcagca gccaatcagc aacagtgaaa
     4501 tggcattttg attattcgtg gcgcttttga tttcgctgtc tgtttatttt ctgacaagca
     4561 gcgtaaactc cgcgtcttcc tcttccagtg atagacctgc atgcataact cccccgcagt
     4621 ctccagcgcg aaatcgtttg acctgacctc gacggcgttt ttaatcgttg cctttctcac
     4681 cggtattgcg ggtgctctgc aaaccccgac actcagtatt ttccttaccg atgaagtaca
     4741 tgcccgtccg gcgatggtgg gattcttctt taccggcagc gctgtcattg ggattctggt
     4801 aagtcagttt ctcgctgggc gctctgataa gcgcggcgat cgcaaatcgc tgattgtctt
     4861 ttgctgcctg ttaggcgtgc tggcctgcac cctttttgcc tggaatcgca actactttgt
     4921 tttgctattc gttggcgtct ttcttagcag ctttggctcg accgctaacc cgcaaatgtt
     4981 tgcccttacc cgtgaacatg ccgacaaaac cggacgtgag gcggtgatgt tcagctcttt
     5041 tttacgcgct caggtttcac tggcatgggt cattggccca ccgctggctt atgcgttagc
     5101 gatgggtttc agctttacgg taatgtatct gagcgcagcg gtagcgttta ttgtttgcgg
     5161 cgtgatggtg tggctgtttt taccgtcgat gcaaaaagag cttccgctgg cgaccggcac
     5221 ggttgaagcg ccgcgccgta accgtcgcga tacgctactg ctgtttgtca tttgtacatt
     5281 gatgtggggc tcgaacagcc tgtacatcat caacataccg ctatttatta tcaacgaact
     5341 gcatcttccc gagaaactgg ccggtgtgat gatggggacc gccgccgggc tggaaatccc
     5401 gacgatgttg attgccggat atttcgccaa acgtctgggt aagcgtttct taatgcgcgt
     5461 tgctgccgtg ggtggcgtct gtttttacgc aggaatgctg atggcgcatt cacctgccat
     5521 tctgttgggc ttgcagctgc taaatgctat ttttattggc attctgggcg gcatcgggat
     5581 gctctatttt caggatttga tgcccggtca ggcaggttca gccaccacgc tctataccaa
     5641 cacgtcgcgc gtgggctgga tcatcgcagg atcagtggcg ggcatcgtcg ccgagatctg
     5701 gaattatcac gctgtgttct ggtttgcgat ggtgatgatt atcgccactc tgttttgctt
     5761 actgcggact aaagatgttt aagacgcggt cagcatttcc agatcgataa gccaggtcat
     5821 ggcctgctga cgcgagttac cgcacatttc agcgctggct tgtaagcctg cacagacttt
     5881 cggtcgcagt ggcgaggtga aaattttaca gcgttgctgt tcatcaagct gaatgcaggg
     5941 cgtattggcg ggcttgccat ctggcatacc gggaataggg ctgaaaattg aaggggcagt
     6001 gcaacacgcc ccgcaacccg gacggcattc catacgttgt tctcttaagg ttaaccaccg
     6061 gattgatgag cgcgcacagt accacctttt ttgcaccagc aaaagtgcga ataccacttg
     6121 cccgaaaggc ccgtcgcgag tactttgtcg cgatattttt gacattttcg actacaggaa
     6181 tttttcgatg ccaagagcga acgaaattaa aaaaggtatg gtactgaatt acaacggcaa
     6241 actgctgctg gttaaggata ttgatattca gtcgcccact gcccgcggtg ccgctacgct
     6301 gtacaaaatg cgtttttctg atgtccgtac cgggctgaaa gtagaagagc gtttcaaagg
     6361 tgatgatatc gttgacaccg tgacgctgac ccgccgttac gttgacttct cctatgtcga
     6421 tggcaacgaa tatgtcttta tggataaaga agactatacc ccgtatacct tcaccaaaga
     6481 tcagattgaa gaagagttgc tgtttatgcc agagggcggc atgccggaca tgcaggtgct
     6541 gacctgggac ggtcaactgc tggcgcttga gctgccgcag accgttgatc tggaaatcgt
     6601 tgaaaccgca ccaggcatca aaggggcatc tgccagcgcc cgtaacaaac cggcgacatt
     6661 gagcactggt ctggtgattc aggtaccaga atacttaagc ccgggcgaaa aaattcgtat
     6721 ccatatcgaa gaacgccgtt atatggggcg tgctgactaa cttcagccgc atgcagaaaa
     6781 gggatagctc aggctgcccc ttttttaatt tattatacca atcttctatt ttgcgcttcc
     6841 tgaacacctt acgccctcaa ttttcactcg ttgattgatc gccctcacac ttcatcgcat
     6901 taacaatcca gaccaatttc aattgctgtc atataacttt acactgtcat tgttaattta
     6961 tcgttactaa gacgtgactc ctatgaagac aattgcctcc gttacgctcc cgcatcatgt
     7021 acacgctcca cgctacgatc gccagcagtt gcaatcacgt atcgttcatt ttggctttgg
     7081 cgcctttcac cgcgctcatc aggcgttact gaccgatcgt gtgctgaatg cccagggcgg
     7141 cgactggggg atctgtgaaa tcagcttgtt cagcggtgat caactgatga gccagctccg
     7201 cgcacagaac catttatata ccgtgctgga gaaaggtgcg gacggcaatc aggtgataat
     7261 tgtcggtgcc gttcacgaat gccttaatgc aaaactggat tccttagcgg caattattga
     7321 gaaattttgc gagccacagg tggcaattgt ttccctgacg attaccgaaa aaggctattg
     7381 tattgacccg gccaccggtg cactcgacac cagtaatccg cggattattc acgatctaca
     7441 aacccctgaa gaacctcact ccgcaccggg tattctcgtc gaagcactga aacgccgccg
     7501 tgagcgcggc cttacaccgt ttaccgtgct ctcctgcgac aatattcccg acaatggcca
     7561 tgtggtgaaa aacgcggtgc tgggaatggc agaaaaacgt tcgccagaac tcgccgggtg
     7621 gataaaagaa cacgtcagtt ttccgggaac catggtcgac cgcattgttc cggctgcaac
     7681 cgacgaatca ctggcagaaa tcagccagca tctgggggta aatgatccct gcgcgattag
     7741 ctgcgaaccg tttatccagt gggtggtgga agataacttc gtcgctgggc gtcctgcctg
     7801 ggaagtcgca ggtgtacaaa tggtgaatga tgtcctgcca tgggaagaga tgaaactgcg
     7861 tatgcttaat ggcagccact cttttctcgc ttatctgggt tacctttcag gattcgccca
     7921 tatcagtgat tgcatgcagg atcgcgcatt tcgccatgcc gccagaacat taatgctgaa
     7981 tgagcaagcg ccgacactac aaattaaaga tgtcgattta acacaatatg cggacaagtt
     8041 aattgctcgt tttgctaatc cggcgctgaa acataagacc tggcaaatcg caatgaatgg
     8101 tagccagaaa ttaccgcaac gtatgctggc aggtattcgc atacatctgg ggcgcgaaac
     8161 ggactggtcg ttgctggcat taggcgttgc tggctggatg cgttacgtca gcggcgttga
     8221 tgatgccgga aatgccattg atgttcgcga tccgcttagc gataaaattc gcgaacttgt
     8281 tgcgggcagc agcagtgaac aacgcgtaac cgccctgctt tccctgcgtg aagttttcgg
     8341 tgatgatctg ccagataacc cgcattttgt gcaggccatc gaacaagcct ggcaacaaat
     8401 cgtacaattc ggcgcacatc aggcgctatt aaacaccctc aaaatttaac gatttctgcg
     8461 gttaaagcgg atgaagctca ccttcgtccg ctctcccctt ctcttttctg ccttttttag
     8521 ccaggattaa cgctcagtta acttaccaga gtattgcgga gccgttgtga ccaggaccaa
     8581 cctcatcacc ggttttctcg gcagcgggaa aaccacgtcg attcttcatc tgttagccca
     8641 taaagatccc aacgaaaaat ggacggtact ggttaatgaa tttggggaag tcggaattga
     8701 tggtgctttg ctcgccgata gcggcgcatt gctgaaagag atccccggcg gctgcatgtg
     8761 ctgcgttaat ggtttaccca tgcaggtagg gttgaatacc ttactgcgtc agggaaaacc
     8821 agaccgcttg ttgatagagc cgaccgggct gggccatccg aaacagatcc tcgatctgtt
     8881 aaccgcacca gtctatgaac cgtggataga tctgcgcgcc accttgtgca ttctcgatcc
     8941 acgcttgctg ctggacgaaa aaagcgccag caatgaaaac ttccgtgacc agctggctgc
     9001 cgcagacatc attgtcgcca ataaatccga ccgtgcgacg cccgaaagtg agcaagcgct
     9061 acagcgttgg tggcagcaaa atggtggcga tcgacaatta attcacagtg agcatgggaa
     9121 agttgacggt catcttctgg atttgccgcg tcgcaattta gccgagttgc ccgccagcgc
     9181 cgcgcattct catcagcatg tcgtgaaaaa agggttagca gcgttaagcc tgccagagca
     9241 tcaacgctgg cgtcgcagtc tgaacagcgg gcaaggatat caggcctgcg gctggatatt
     9301 cgacgctgat acggtattcg acaccattgg cattctggaa tgggcgcgac ttgcaccggt
     9361 ggaacgcgtc aaaggcgtgc tgcgtattcc cgaagggctg gtacgaatca accgtcaggg
     9421 cgatgacctg cacattgaaa cgcaaaacgt tgcgccaccg gacagccgta ttgagctgat
     9481 ttccagcagc gaagctgact ggaatgcctt gcagagcgcg ctgttgaagc ttcgtttagc
     9541 gactaccgcg taaggttgcc tgcgtttttc agtaagataa ttagagaaaa tatgattaaa
     9601 aatttgccgc aaatagtgtt gttgaatatt gtcggcctcg cgctgtttct ttcctggtat
     9661 attcccgtta atcatggatt atggttgccg attgatgcgg atatttttta tttctttaat
     9721 cagaaactgg tcgaaagtaa ggccttttta tggctggttg cattgaccaa caatcgcgct
     9781 ttcgacggtt gttctctgct ggcgatggga atgttgatgc tgagtttctg gctgaaagaa
     9841 aacgccccag gcagacgacg tatcgtgatt attggtctgg taatgctatt aactgcagtg
     9901 gtattaaacc agctgggtca ggcattaatt cctgtaaaac gggccagccc aacattgacg
     9961 tttactaata ttaaccgcgt cagcgaactg ctctctgtcc ccacgaaaga tgcctcacga
    10021 gatagctttc ccggcgatca cggcatgatg ctgcttattt tttcggcatt catgtggcgt
    10081 tatttcggta aagttgcagg tcttatcgcc cttattattt ttgtggtttt tgcgtttccc
    10141 agagtaatga ttggcgcaca ctggtttact gacatcattg tcggttcgat gaccgtgata
    10201 ttgatcggtt tgccctgggt gttgctgacg ccattaagtg atcgattaat cacctttttt
    10261 gacaaatcac taccgggaaa aaacaaacat ttccaaaaca aataactcac agtaattaac
    10321 atcatcaggt ttatttttat agtgaggata atcctgatga tgcgcaccgt gctttcatct
    10381 atcgaacgca aaaatcattc tctaagtaaa tgaatggatt gcatgcgttt cactcaatcg
    10441 tactttaatt gaccaatccc gcttattaac tttctgtatc actttttctt ataaaaaatc
    10501 atgtaaaacc gctcgccaag accgcaccaa tcgggtaatc tcgaactcgt tttgcctcgg
    10561 cggtagatta tcctcacagc atataatttt gtgcgttagt ccacagattt ggccttaagg
    10621 aattgtttca acatgcccag gtaattagtc tcgtgtcgct tggcattttt ttataacgat
    10681 atttgtcgtt aaggacttca agggaaaaca aacaacatgg tcaaatctca accgattttg
    10741 agatatatct tgcgcgggat tcccgcgatt gcagtagcgg ttctgctttc tgcatgtagt
    10801 gcaaataaca ccgcaaagaa tatgcatcct gagacacgtg cagtgggtag tgaaacatca
    10861 tcactgcaag cttctcagga tgaatttgaa aacctggttc gtaatgtcga cgtaaaatcg
    10921 cgaattatgg atcagtatgc tgactggaaa ggcgtacgtt atcgtctggg cggcagcact
    10981 aaaaaaggta tcgattgttc tggtttcgta cagcgtacat tccgtgagca atttggctta
    11041 gaacttccgc gttcgactta cgaacagcag gaaatgggta aatctgtttc ccgcagtaat
    11101 ttgcgtacgg gtgatttagt tctgttccgt gccggttcaa cgggacgcca tgtcggtatt
    11161 tatatcggca acaatcagtt tgtccatgct tccaccagca gtggtgttat tatttccagc
    11221 atgaatgaac cgtactggaa gaagcgttac aacgaagcac gccgagttct cagccgcagc
    11281 taataaaccg tttggatgca atcccttggc tatcctgacg agttaactga aagcactgct
    11341 taggtagtgc ttttttgttt tcattcatca gagaaaatga tgtttccgcg tcttgatcca
    11401 ggctatagtc cggtcattgt tatcttttaa atgttgtcgt aatttcagga aattaacgga
    11461 atcatgttca tacgcgctcc caattctgga cgtaagctcc tgcttacctg cattgtagca
    11521 ggcgtgatga ttgcgatact ggttagctgc cttcagtttt tagtggcctg gcataagcac
    11581 gaagtcaaat acgacacact gattatcgac gtacaaaagt atctcgatac ctattttgcc
    11641 gacctgaaat ccactactga ccggcttcag ccgctgacct tagatacctg ccagcaggct
    11701 aaccccgaac tgaccgctcg cgcggcgttt agcatgaatg tccgtacgtt tgtgctggtg
    11761 aaagataaaa aaacattctg ttcatctgcg actggtgaga tggacattcc actcaatgaa
    11821 ttgattccgg cgctcgacat taataaaaac gtcgatatgg cgatcttacc cggcacgccg
    11881 atggtgccga acaaacccgc aatcgtcatc tggtatcgca accctttgct gaaaaatagc
    11941 ggtgtgtttg ccgctctgaa tctcaacctg acgccttctc tcttttatag ttcacggcag
    12001 gaagattacg atggcgtcgc cctcattatt ggcaatactg cgctatctac cttttcttca
    12061 cgtttgatga acgttaatga attaaccgac atgcctgtcc gtgaaactaa aattgcgggc
    12121 attcctctga ccgttcggct ttatgcggat gactggacat ggaacgatgt gtggtacgca
    12181 tttttactgg gcggcatgag tggaactgtc gttggcctgc tctgctatta cctgatgagc
    12241 gtacgtatgc gccccggcag agaaatcatg accgccatca agcgcgaaca attttacgtg
    12301 gcgtatcaac cggtggtgga tacacaagct ttgcgagtaa cgggcctgga agtactgcta
    12361 cgctggcggc atcctgtcgc gggagaaatt cccccggatg ccttcattaa ctttgccgaa
    12421 tcgcaaaaga tgattgtgcc gctgactcag cacctgtttg agttaattgc ccgcgatgcc
    12481 gcagaattag aaaaagtgct gccagtaggc gtcaaatttg gtattaacat tgcgccggac
    12541 catctgcaca gcgaaagctt taaagcagat atccagaaac tgctcacttc cctgcccgca
    12601 caccatttcc agattgtgct ggaaattacc gagcgcgata tgctgaaaga gcaagaagcc
    12661 acacaactct tcgcctggct gcactcggtc ggcgtagaaa ttgctattga tgacttcggc
    12721 accgggcaca gcgcgcttat ctatcttgag cgttttacgc tcgattatct gaaaattgac
    12781 cgtggattta tcaacgccat cggtacggaa acgatcactt cacccgtact tgacgcggtg
    12841 ctgacgctgg cgaaacgcct caatatgctg acggttgctg aagggggcga aacgccggaa
    12901 caggcgcgat ggctaagcga acccggcgtt aatttcatgc aaggctactg gattagtcgc
    12961 ccgttaccgc tggacgattt tgttcgctgg ctgaagaaac cgtatacgcc gcagtggtaa
    13021 ggtgtgctta cgtcccttat tattcatagt gaaagcatgc cggattgcgg ctaatgatga
    13081 gtaaaaggaa atccgttgca gatgattgtg cgcatactgc tgctgtttat cgccctgttc
    13141 accttcggtg cgcaggcgca ggctatcaag gaaagctatg cctttgccgt gctgggcgaa
    13201 ccccggtacg catttaattt caaccatttt gattatgtga accccgccgc gccaaaaggt
    13261 gggcagataa cgttgtcagc cctcggtacc ttcgataatt tcaaccgcta tgcactgcgc
    13321 ggcaacccgg gcgcacgcac cgagcagttg tacgacacgc tatttacgac ttccgatgac
    13381 gaaccaggca gttattaccc gctgattgct gaaagtgcac gctatgctga cgattattcc
    13441 tgggtggagg tcgctattaa tccgcgcgcc cgttttcatg atggttcgcc cattactgcc
    13501 cgcgatgtag agtttacttt tcaaaaattt atgaccgaag gcgtgccgca atttcgtctg
    13561 gtctacaaag gcaccaccgt caaagccatt gcaccgttaa ccgtgcgcat tgagttagct
    13621 aaacccggca aagaagatat gctgagtctg ttttcgctgc cggtatttcc agaaaagtac
    13681 tggaaggatc acaaacttag cgacccgctc gccacgcctc cgcttgccag tggtccgtac
    13741 cgcgttacgt cctggaaaat ggggcaaaat attgtctatt cccgtgtgaa agattactgg
    13801 gcagcaaact taccggtaaa ccgtggacgc tggaatttcg acaccattcg ctacgattat
    13861 tacctcgatg ataatgtcgc ctttgaagcg tttaaagcag gtgcctttga tttgcgtatg
    13921 gaaaacgacg ctaaaaactg ggccacgcgt tataccggta aaaatttcga taaaaaatac
    13981 atcatcaaag atgagcaaaa gaacgaatca gcccaggata cgcgctggct ggcgtttaat
    14041 atccaacgtc cggtattcag cgatcgccgg gtccgggaag caatcactct cgcctttgac
    14101 tttgaatgga tgaacaaggc gttgttttac aacgcctgga gtcgcacgaa cagttatttt
    14161 cagaataccg aatacgcggc cagaaattac cccgacgccg cggagctggt gcttctggca
    14221 ccaatgaaaa aagatctacc gccagaagtc ttcacacaaa tctaccagcc gccggtatct
    14281 aaaggcgatg gctacgatcg tgacaacctg ttaaaagccg acacacttct caacgaagcg
    14341 ggctgggtgc tgaagggtca gcaacgcgtt aatgccacaa cgggtcagca actcagcttt
    14401 gaattattgc ttcccgcaag cagcaatagt cagtgggtat tgccgttcca gcacagcctg
    14461 caacggctgg gtatcaacat ggacattcgc aaggtggata actcgcaaat caccaaccgc
    14521 atgcgcagtc gcgactatga catgatgccg cgcctatggc gggcgatgcc gtggcccagt
    14581 tccgatttac agatttcctg gtcatcggaa tatatcaatt ccacttataa tgcccccggc
    14641 gtgcaaagcc cggttatcga ctcactgatc aaccaaatta ttgccgcgca gggaaataaa
    14701 gaaaaattat tgccgttggg gcgagcactg gatcgcgtat taacgtggaa ttattacatg
    14761 ctgccaatgt ggtacatggc ggaagaccgt ctcgcctggt gggataaatt ctcccacccc
    14821 gctgtacgcc ctgtttacag cctgggtatc gatacctggt ggtatgacgt taataaagcg
    14881 gccaaactgc cgtcagccag gcaacaggga gagtagatgg gcgcttacct gattcgccgt
    14941 ctgttgctgg tgatcccaac attatgggcg attatcacca tcaacttttt catcgtgcaa
    15001 attgcgcctg gcggtccggt cgaccaggcc atcgccgcca ttgagtttgg taatgccgga
    15061 gtattacccg gcgcaggcgg tgaaggtgtt cgtgccagcc atgcgcaaac gggtgtcggc
    15121 aatatcagcg acagtaatta ccgtggcgga cgcggattag atccagaagt gatcgctgag
    15181 atcactcatc gctacggttt tgataagccg atccacgaac gttacttcaa aatgctctgg
    15241 gactacatcc gctttgattt tggtgatagc ctgtttcgca gcgcctcggt gctgacgctg
    15301 attaaagaca gtctgccggt ttccatcacc ctcggattgt ggagcacgct gattatctat
    15361 ctggtgtcga ttccgttagg cattcgcaaa gctgttcata atgggagccg ctttgacgtc
    15421 tggagtagcg catttatcat tatcggctac gccattccgg cctttttgtt tgccatcctg
    15481 ctgattgtct tcttcgcggg cggcagctat ttcgacctgt tccctctacg cggcctggtt
    15541 tccgctaact ttgattcgct gccgtggtat cagaaaatca ccgattatct gtggcatatc
    15601 acgctgccgg tgctggcgac ggtgattggt ggctttgcgg cgctgaccat actgacaaaa
    15661 aactcattcc ttgatgaagt gcgcaagcaa tacgtggtga ccgcgcgtgc gaaaggggta
    15721 agtgaaaaaa atattctctg gaaacatgtg ttccgcaacg ccatgctgct ggtgattgcc
    15781 ggttttccgg cgacgtttat cagcatgttt tttaccggct cgctgctgat tgaggtgatg
    15841 ttttcactca atggtctggg cttactgggc tacgaagcga ccgtctcgcg cgattatcct
    15901 gtaatgtttg gtaccttgta tattttcacc ctgattggcc tgctgctgaa tattgtcagt
    15961 gatatcagct atacgctggt tgatccgcgt attgattttg agggacgtta atgtcgcgac
    16021 tcagccccgt caatcaggcc cgttgggcgc gttttcgtca taaccgtcgc ggctactggt
    16081 cgttatggat tttcctcgtc ttgtttggtt tgagtttgtg ttcagagctt atcgccaacg
    16141 ataaaccatt gctggtacgt tatgacggca gttggtattt cccgttgttg aaaaactaca
    16201 gcgaaagcga ttttggcggc ccgctggcaa gtcaggctga ttatcaggac ccgtggctga
    16261 aacaacggct ggaaaataac ggctgggtac tgtgggcacc gattcgcttt ggtgctacca
    16321 gtatcaactt tgctaccgat aagcccttcc cttctccacc ctcccggcaa aactggctgg
    16381 gaacggatgc caacggcggc gatgtgctgg cacgcattct ctatggcacg cggatctcgg
    16441 ttctgtttgg cctgatgctg actctctgtt ccagcgtgat gggcgtgctg gcgggggcgc
    16501 tacaaggcta ttacggcggt aaagtcgatc tctggggaca acgctttatt gaagtatggt
    16561 cggggatgcc gacgctgttt ttgattattt tactttccag cgtcgtacag cctaacttct
    16621 ggtggctgct ggcaattact gtcttgtttg gctggatgag tctggtcggc gtggtgcggg
    16681 cggagttttt acgtactcgt aatttcgact acattcgtgc ggcgcaggcg cttggcgtca
    16741 gcgatcgcag tatcatcctg cgtcatatgt tgcctaatgc catggtcgcg accctcacct
    16801 ttttaccgtt tattttatgt agttcgatca ccaccctgac ctcactcgat ttcctcggct
    16861 tcggtctgcc gctcggttca ccgtcactcg gtgaactgct attacaaggg aaaaataacc
    16921 ttcaggctcc gtggcttggg atcaccgcct tcttgtcggt ggcgatatta ttgtctttgc
    16981 tgatctttat tggtgaagcc gtccgcgacg catttgatcc taataaggcg gtgtagcatg
    17041 acgcaaactc tgttagcgat tgaagatttg tcggtgggtt ttcgccatca gcaaaccgta
    17101 cgtacagtag tcaatgatgt ttcactacag attgaggctg gcgaaacgct ggcgctggtg
    17161 ggtgagtcag gttcaggcaa aagcgttacc gcgctgtcaa ttttacgcct gctcccttcc
    17221 ccgccggttg aatatctctc cggcgatatt cgttttcgtg gcgaatcgct gcttcatgcc
    17281 agcgatcaaa cgttgcgcgg tgtacgcggt aataagatcg ccatgatttt tcaagagccg
    17341 atggtgtcgt taaatccatt gcataccctg gaaaaacagc tttatgaagt gctttcactc
    17401 caccgcggga tgcgtcggga agcggctcga ggcgaaattc ttaactgcct tgatcgcgtt
    17461 ggtatccgcc aggcggcaaa acggctgaca gattatccgc atcagctctc cggcggcgaa
    17521 cgccagcggg tgatgattgc gatggcgctg ttaacgcgac cggaattatt aattgccgat
    17581 gaaccgacca ccgcactgga cgtctctgtc caggcgcaga ttttacagct gttgcgcgaa
    17641 ctgcaaggcg agctgaatat gggcatgctg tttattactc ataacctcag cattgtcaga
    17701 aaactggccc accgcgtggc ggtaatgcaa aacggtcgct gtgtcgagca aaattacgcc
    17761 gctacgctat ttgcctcacc cactcatcct tacacacaaa agctactcaa cagtgaaccg
    17821 tcaggcgatc cagtgccgtt gccagaacct gcctcaacgt tgctggatgt tgaacagctt
    17881 caggttgcct tccccattcg caaagggatt ttgaagcgca ttgtggatca taatgtggtg
    17941 gtgaaaaaca tcagttttac gctacgagcg ggtgaaacac tgggtttagt gggcgagtcc
    18001 ggttccggga aaagtacgac gggactggcg ctgctgcgac tgattaattc tcagggcagc
    18061 atcatctttg acggtcagcc actgcaaaat ttaaatcgcc gccagctgtt acctattcgt
    18121 catcgcattc aggtggtatt tcaggatcca aactcctcgc tcaacccacg actcaacgtt
    18181 ttgcagatta ttgaggaagg cttacgggtt caccagccga cgctttctgc cgcacaacgc
    18241 gaacaacaag tgatagccgt gatgcatgaa gtgggattag atcctgaaac acgccaccgt
    18301 tatccggcgg agttctctgg tggtcagcga caacgtattg caattgccag ggcattaatt
    18361 cttaagccct cgctgatcat acttgatgaa ccgacatcat cactcgacaa aacggtacag
    18421 gcgcaaatat tgacgctatt gaaatcattg caacaaaagc tgcaactggc ctatttgttt
    18481 atcagccacg atttgcacgt tgtccgcgcg ttatgtcatc aggttatcgt actgcgacaa
    18541 ggggaagtag tggaacaagg accgtgcgcg cgcgtgtttg ccgcaccgca gcaggagtat
    18601 acgcgtcagc tactggcgtt gagctgacgc ttaaaaagga ttgtagtttg aaaagggttc
    18661 ggcaattgcc acaccaaaat ttttcaatcg gcatgttgca gcaaactcgt cctggcgatt
    18721 tacaaacagg cacggctcac cttcacactc cagcaccgaa cacggaactt cgatgtcgct
    18781 taacgcctgg cttagtttgt acatcaccga ccatgcatta tcaccatccg ggctaagcaa
    18841 tttaagcgcc accaggctgt tgtcaccgca cggtccattt tgcggaatcg gttcaacctt
    18901 cgaacctgcg aaaccagcag accagcgaaa gttctgcggt agacgatgga cgattgagag
    18961 ttgtaatgaa gtcacttatt ttccccggaa gcacatttac ttcacaattt gtttacatca
    19021 attttaacac atcatcaaca atccgtcttt atacagatcg taaagattga tgcctcgcct
    19081 gcgtggcctc tatggctctg atttaagtaa tatctgcggg cgtggtcacg tttgcggggc
    19141 tatatgtacc cgtttctgcg atctaactca acctttttaa ctacaatgat gtgacttttt
    19201 acataaattg attttacata aaataaacat atatcggggg aatgatagat ttgtggttga
    19261 catgcatcaa caaaggaagc cttttagctt cctcgttgtg caatagatca ccgttttttc
    19321 ggtcgactgg cgtacagaca gaagagaatg gagctgcttg cgcagaatgc aattgaccaa
    19381 atcatcggcc atgcagagtt aaaggtcgca agagaaagca atgcgccaac aattgcccct
    19441 atgccaaaac ggaaggttcc tgccagcgaa gatgccgttc ccgccatatg gggaaactca
    19501 tcaagaatga ccgccatcgc attggatgac accatcgaca cacagcccac aaacgccgca
    19561 acgccaacca ccagaatccc agccccagca gcgcactgat gaccatccac gctgccataa
    19621 taaattgtat ccacaacccc gagcggaaca tatttaacgc gccaatgcgg cgaacgaagc
    19681 ggctgttaaa gatggtcatc acgaacagga aaacaatgtt tagtgcaaag taataaccaa
    19741 agttttccgg cgcgacgtgg ttaatttcaa tgtagacaaa cggtccggcg ctcaggaacg
    19801 agaacattcc ggcaaagctg aaaccgctgg ccagcatata actcaggaca cgcttatgac
    19861 ggaacagcgc cgcaaagtta ccaatagtag tacgaatgtg aaaaggctgg cgacgctccg
    19921 gtggtaaggt ttctttgatc agaaagaaga tcattgccga agccagaatc gccgccacgg
    19981 cgaggatcca gaagatgtaa tgccagctca gccacaccag cacccagccg ccaactatcg
    20041 gtgccatcag cggtgcaatg gtcgtcacca gcatgacaaa cgacatcatc cgcgagaact
    20101 cttctttcgg gtagatatca cgcatcaaag cgttgataac catgctggcc gcagccgcag
    20161 ccagcccgtg gaaaaaacgc atcacaatca gctgatcgat ggtttgtgcc aacgcacacg
    20221 ccaccgcggc ggcggcaaac accagcgtac cgccgagcac caccggctta cgcccgaagc
    20281 tgtctgccat cggcccgtag attaactgcc ccaacgcaaa gcccagaata taagtactga
    20341 gggtcatctg cgtactgccc gccggtacgc caaactgcgc tgaaattacc ggtagcgcgg
    20401 gcagatacat atcaatcgac agcggcatca acatggccag caggccaagg ataaaaacaa
    20461 tagcaaacga cgaatgctgt cgggtggtca caacgggctc ctgaaagtca ttgaaaagtt
    20521 agacgacgct ggcaatttct tcttcagtta acggacgata ttcaccgggg gctaaatcag
    20581 catccagcgt aataccgcca atacgttcac gatgcagctc aaccacgtgg ttacccacgg
    20641 cggcgaacat gcgtttcacc tgatgataac gcccttcgct gatggtcaga cgaacctgcg
    20701 ttggggtaat cacttccagc accgcaggct tagtgagatc tttttcgtta tgcagctgca
    20761 cgcctttagc aaattgctct gccgtatcgt cagctacagg tgattccagt gtcaccagat
    20821 aggtcttctc gcaatgatgg cgcggagaag taatgcggtg cgaccactga ccatcatcag
    20881 tcatcagcac cagaccggtg gtatcgatat ccagacgtcc tgcggcgtgc agtttccagg
    20941 ctaccggttc atccagaaaa tagagcaccg ttgggtgatc agggtcgtcc gtggagcaaa
    21001 catagccctg aggcttattg agcatgaagt aacgtggacc atgttgctgc gccagcgggt
    21061 tgccatcgta agcgacatca tgttcaggaa gcagtttgaa cgctgcatta cgaacaattt
    21121 cgccatcgac ggtgacacga ttgccgcgga tttcacgccc ggcaatagca cggctaacgc
    21181 cgagttgctg tgcgataaat ttatcaagtc gcatgtgtgt gattttgcct gtaaaaacgg
    21241 aggtcgggca ttgacccgaa aatctgaact gttgtctgcc cagtatagcg gtctaataac
    21301 atccctcaag ggaaaaagat ccatggcata ctattagcag aataatctac ctacgcgaga
    21361 ccatgatttt tacactccgc ccatatcagc aagaagccgt ggatgccacg ctcaaccatt
    21421 ttcgtcgtca taaaacccct gccgttatcg tgctgcccac cggcgcaggt aaaagcctgg
    21481 tgattgccga actggcacgg ctggcgcgtg gtcgtgttct ggtgctggca cacgtcaaag
    21541 aactggtggc gcaaaaccat gcaaagtatc aggcgctggg gctggaagcc gatatttttg
    21601 ccgctgggtt aaagcgcaaa gagagccacg gtaaagtggt atttggcagc gtgcagtcgg
    21661 tcgctcgtaa tcttgatgcc tttcagggtg aattttcgct gttgattgtc gatgaatgcc
    21721 accgtattgg tgacgatgaa gagagccagt atcagcaaat cctcactcac ctgactaaag
    21781 tgaatcccca cttacgcctg ctggggctga ctgccacgcc ttttcgattg ggcaaaggct
    21841 ggatctacca gttccattat cacggcatgg tacgcggcga tgagaaagcc cttttccgtg
    21901 actgcattta tgagctgccg ctgcgttata tgattaaaca cggctatctg acgccgccag
    21961 aacgactgga tatgccagta gtgcaatacg atttcagccg cttgcaggca cagagtaacg
    22021 ggctgttcag cgaagctgat ctcaaccgtg agctgaaaaa acagcaacgc attacgccac
    22081 atatcatcag ccagatcatg gagttcgccg aaaagcgcaa aggggtaatg attttcgccg
    22141 ccaccgttga acacgcaaaa gagattgtgg gattactgcc tgccgaagat gcagcactga
    22201 ttactggcga cacccccggc gctgagcgcg atgtgttaat tgaagatttt aaagcccagc
    22261 gttttcgcta tctggtcaac gtcgcggtac tgaccaccgg atttgacgcc ccgcacgtcg
    22321 atcttatcgc cattctgcgt cctaccgaat cagtgagtct ttaccaacaa attgtcgggc
    22381 gcggtctgcg tctcgctcct ggcaagactg attgcttaat tcttgattat gcgggtaatc
    22441 ctcacgacct ctacgcgccg gaagttggta caccgaaagg caaaagtgac aacgtcccgg
    22501 tacaggtttt ctgccctgcc tgcggttttg ccaacacctt ttgggggaaa acgaccgccg
    22561 acgggacatt gattgaacac tttggtcgtc gctgtcaggg atggtttgaa gatgacgacg
    22621 gccatcgcga acagtgtgac ttccgtttcc gttttaaaaa ttgcccgcaa tgtaacgcgg
    22681 aaaacgatat tgccgcccgc cgctgccgcg aatgtgacac ggtactggtt gatccggatg
    22741 atatgttaaa agcggcgcta cgactgaaag acgcgctggt attacgctgt agcggcatgt
    22801 ctttacagca tgggcacgac gagaaaggcg aatggttgaa aatcacctat tacgatgaag
    22861 acggcgcgga tgtgagtgag cgtttccgtc tgcaaacgcc cgcccagcga actgccttcg
    22921 agcagctttt tatccgcccg catacgcgca caccgggcat ccctctgcgc tggatcaccg
    22981 ccgccgatat cctcgcccag caagccttac tgcgacatcc ggattttgtc gtcgcccgca
    23041 tgaaaggtca gtactggcag gtgcgtgaaa aagtgttcga ttacgaaggt cgttttcgtc
    23101 gggcgcacga attacgcggt taatggtagt tttgattgat gtataaggcg attgagtata
    23161 gaatctcgcc cgcttttgca tacgcaaagc agatcactta cctgttgctg ggtcgcctgt
    23221 agcaggatta atttaagaga gaaagaaatg tttactatca acgcagaagt acgtaaagag
    23281 cagggtaagg gtgcgagccg ccgcctgcgt gccgctaaca agttcccggc aatcatctac
    23341 ggtggcaaag aagcaccgct ggctatcgag ctggatcacg acaaagtcat gaacatgcaa
    23401 gctaaagctg aattctacag cgaagttctg gccatcgttg ttgacggtaa agaaatcaaa
    23461 gttaaagctc aggacgtaca gcgtcacccg tacaaaccga agctgcagca catcgacttc
    23521 gttcgcgctt aattgctgaa taagttgtaa aaaaccccgc tccggcgggg ttttttgtat
    23581 ctgcagatta tgcctgatta cggtattgct attttttgca ggccagataa ggcgttcacg
    23641 ccgcatctgg cattcagaat acaaaaccga ttaattgccg ccagacgtcc ggcgctgcaa
    23701 ttggtcgcgc aaattcggcg gcgtgccttt aatggtcaag gtatcggttg ctggatccca
    23761 gaagatgcgt tcacctaaca gcatcgcatc aaagttaata gtcaagccac cgccgctacc
    23821 ggcaaacttc gtcaactgac gcagtgtgct acggtctgcc gggaagctct cttccagttc
    23881 gtagcctttt tcagccgcaa acttcgtgaa gctcacttcg cttacgcctg ccagctcttt
    23941 cgacagcgat tccagttcga tctcttcgcc tgcctgcagc tgctcattac agtagctata
    24001 aacctgctgg cgcacgttct gtcgctctgc tttatccagt tgtgcttcgg cagtgaaatc
    24061 atcaaccgct tgcaacagcc cacggttttg cgctttcgcg ttcaatcctt cgctggcccc
    24121 gaggaaatcc ataaagaaat ccgccacttt gcgccctact cgccctttca ggaaagtgag
    24181 atagcgggtg gactctggat tggtttccca ttcggttaaa tcgatacgcg caacaatatc
    24241 cgcatgattg atatcaagat aatgggttgg gttgatgtcg agattttcgt taacgcgcat
    24301 actgctcagg ttgctcagaa ctgccaccag cagatactcc accgccagat aacggtagtg
    24361 gcaaaacagc acgaatccac cgtcagcaaa aggatatttc gctaattcgt cacgcaggcg
    24421 cccggttgcc gcgcggctaa atgccagaaa gtcctcttcg ccctgacgct gtaagcgcag
    24481 cgtctgcgcc agttcactct cttcgctaaa caagccgtaa gctttatttt tggcgctata
    24541 gacccgatgc agttctgcca ccatctcaac gacggtttct gtcggttcca gcaatgaatc
    24601 gcgcaacacc agctcaaggt tctgctcatc acgcttgata agctggtgca gagcaatctg
    24661 gttgatatcc agactcatga taaactctcc tttaagaccg ggcggtattc aaccaccgcc
    24721 ggttaagcga cgcaataaaa gatggcggtc attttacaga aggcagcgta acgagaatga
    24781 tttaacgcat aaaaaagcag aaaaaaaacc gttgctacgg taatatgttg ccctttcatc
    24841 aactaactga tttcgattta tgccacaaat ttcccgctac agtgatgaac aggttgaaca
    24901 attgctcgca gagctgctca acgtactgga aaaacataag gctccgaccg acctttccct
    24961 gatggtgtta ggcaacatgg tcactaacct tatcaacacc agcattgccc cggcccaacg
    25021 ccaggcaatt gccaactctt ttgcccgcgc cttacagtcc tctatcaacg aagacaaagc
    25081 gcactaaggg aaacagataa caggttatgg taactcatcg tcagcgctac cgtgaaaaag
    25141 tctcccagat ggtcagttgg gggcactggt ttgcactgtt caatattctg ctttcgctcg
    25201 tcattggcag ccgttacctg tttatcgccg actggccgac aacgcttgct ggtcgcattt
    25261 attcctacgt aagcattatc ggccatttca gcttcctggt gttcgccacc tacttgctga
    25321 tcctcttccc gctgaccttt atcgtcggct cccagaggct gatgaggttt ttgtccgtca
    25381 ttctggcaac ggcgggaatg acgctattac tgatcgatag cgaagtcttt actcgtttcc
    25441 atctccatct taatcccatc gtctggcagt tggttatcaa cccagacgaa aatgagatgg
    25501 cgcgcgactg gcagctgatg ttcatcagcg tgccggttat tttattgctt gaactggtgt
    25561 ttgcgacgtg gagctggcaa aagctgcgca gcctgacgcg tcgtcgacgc ttcgcgcgcc
    25621 cgctggccgc attcttattt atcgccttta tcgcctcgca tgtggtgtat atctgggccg
    25681 atgccaactt ctatcgcccg atcaccatgc agcgcgctaa cctgccgctt tcgtacccga
    25741 tgacggcgcg acgtttcctt gagaagcatg gcctgcttga tgcgcaggag tatcaacgcc
    25801 gtcttattga gcaaggtaat ccagacgccg tttccgtaca gtatccgtta agcgaactgc
    25861 gctatcgcga tatgggcacc gggcagaatg tgctgttgat tactgtcgat ggcctgaact
    25921 actcacgctt cgagaagcag atgcctgcgc tggcaggttt tgctgagcaa aatatttcgt
    25981 tcacgcgcca tatgagctcc ggcaacacta cagacaacgg catctttggc ctgttctatg
    26041 gcatctcgcc gagctatatg gacggcattc tgtcgacccg tacccctgcg gcgttaatta
    26101 ctgcgcttaa tcagcaaggc tatcagctgg gattattctc gtcagatggc tttaccagtc
    26161 cgctgtatcg ccaggcattg ttgtcagatt tctcgatgcc gagcgtacgc ccccaatccg
    26221 acgagcagac cgccacgcag tggatcaact ggctgggccg ctacgcacaa gaagataacc
    26281 gctggttctc gtgggtctct ttcaatggca ctaacattga cgacagcaat cagcaggcat
    26341 ttgcacggaa atatagccgg gcggcaggca atgtcgatga ccagatcaac cgcgtgctca
    26401 atgcactgct tgattctggc aaactggaca atacggttgt gattatcact gccggtcggg
    26461 gtattccgct gagcgaagac gaagaaacct ttgactggtc ccacggtcat ctgcaggtgc
    26521 cattagtgat tcactggcca ggcacgccgg cgcagcgtat taatgcgctg actgatcata
    26581 ccgatctgat gacgacgctg atgcaacgcc tgctacatgt cagcacacct gccagcgaat
    26641 attcgcaagg tcaggatttg ttcaaccctc aacgccgtca ttactgggtc actgcagcgg
    26701 ataacgatac gctggcaatt accaccccga aaaagacgct ggtgctgaac aataacggta
    26761 aataccgcac ttacaactta cgtggtgaaa gagtgaaaga tgaaaaacca cagttaagtt
    26821 tgttattgca agtgctgaca gacgagaagc gttttatcgc taactgatta attataaatc
    26881 agttagcgaa atatcttact tgcaatcggt gtggaaaacg gtagtattag cagccacgag
    26941 tcggcacgta gcgcagcctg gtagcgcacc gtcatggggt gtcgggggtc ggaggttcaa
    27001 atcctctcgt gccgaccaaa tcgcccaccg gataccaccg gaattaacag tttttagaca
    27061 cgaaaagccc gctaatcctt gattagcggg tttttttatg gtttttagtc accggacatc
    27121 accggattta taagctatca gccggatttt ttagttatac gcttagttat acgggcttgc
    27181 gtataactaa agccgtataa ctaaaaccct gttttttcgt gtggaatcat atacatatgg
    27241 cgagaaaaac acccccatta accacggtgc agatcaaagc agccagacca gcggaaaagg
    27301 aatacaccct acaggacggc ggagggcttt ttctcctggt caaaccgtcc ggatcaaaac
    27361 tctggcgatt ttcctactac cggccatcgg acaaaaaaag aatattgctg agttttggat
    27421 cgcttgatga tgtttccctg gctgatgcca gaaaacgccg tagcgagtac agagcgttaa
    27481 tcagtgccgg aactgacccg cagggccatg agaagaaaaa acgagaggca gaggcccgaa
    27541 gacaagggaa cacgttcgaa aatgtggcgg cggcatggta ccaggtgaaa atcagccaga
    27601 atctggcccc caacacgatt aaagacatct ggcgttcgct ggataaatat gtattcccgt
    27661 tcatcggcaa cacgccaata gataccctca ccgcccgaag gttcgttgaa gtgcttacac
    27721 ccatcaagga gcgcggcaac ctggaaacac tcaagcgggt tttacagcgc gttaatgagg
    27781 taatggatta cgccgccaac agtgggctga ttgatgccaa tccggctatg aatgtgcgta
    27841 aggcgtttcc ctcacctgta aaaaaacata tgccaacaat ccgccccgaa cagctgccgg
    27901 agcttatgca ggctttatca gtatcggcaa cagaacggca gaccagatta ctgattgaat
    27961 ggcagttact gaccgtaacc cgtcccgccg aagcgtcatc aacgcggtgg gatgaaatca
    28021 acctggacgc gaagcaatgg acgatacctg ccggacgcat gaagatgcgc agggatcacg
    28081 ttatcccgct ttccggtcag gctatggcgg tgctggaggc catgaaacca atcagccacc
    28141 accgcaatta cgttttccca agtctgaaag acccacagca gccgatgaac agccagacag
    28201 ctaacgcagc attgcggcgt atgggattcg ctggcgtgct ggtgtctcat ggattacgcg
    28261 ccatattcag cacagcagcg aacgaggaag gattcgagcc ggacgtaata gaggcggcac
    28321 ttgcccacgt cgacaccaac gaagttagac gggcatacaa ccggagcaac tacatagaaa
    28381 aacgcatcgt gctgatgcgc tggtggggcg aatttgtcga ggctgcggcg acgggcgtaa
    28441 ccctcgccag tggtaaaagg ggtatccgag ccgtgtagct gtacagaaaa ccagtaaaaa
    28501 ctacgaaaac catgtaaaac cgtcgtataa ttgcatcaaa tttaacgaca aggccgtgaa
    28561 acatgaaacc gttaagatgc aaaaaaatat cagatgcaat tgcgacgggc tgcaactggc
    28621 cctgatggtt cagcatgaat tttggtcaac ctacgatccg gaggacagaa cgacggcccc
    28681 atcaaaaaaa caggtagtag attttctggt atcccgtggc gcttccagaa atctggcggt
    28741 aagtattgat aaggtcgtac gtccggcatc tatgaagatc ggaggcaggc ccaaaaaatg
    28801 gcggtaacaa tcctggaagc ggcagaaatg ccgctttttt tataattcca tttcaaatca
    28861 tca
//
LOCUS       DAJVUP010000034        28400 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.034, whole genome shotgun sequence.
ACCESSION   DAJVUP010000034 DAJVUP010000000
VERSION     DAJVUP010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28400
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.034"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            69..1321
                     /locus_tag="OQQ75_001402"
                     /pseudo
     CDS             69..1321
                     /locus_tag="OQQ75_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1718..2032
                     /locus_tag="OQQ75_001403"
     CDS             1718..2032
                     /locus_tag="OQQ75_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416114.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid shock protein"
                     /protein_id="HCS1975782.1"
                     /translation="MKKQIEGMTMKKVLALVVAAAMGLSSAAFAAETATTTKAAPAKT
                     THHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHSHQQPAKPAAQP
                     AA"
     gene            2125..2208
                     /locus_tag="OQQ75_001404"
     CDS             2125..2208
                     /locus_tag="OQQ75_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975783.1"
                     /translation="MVGRYRFEFILIILILCALIAARFYLS"
     gene            2308..3129
                     /locus_tag="OQQ75_001405"
     CDS             2308..3129
                     /locus_tag="OQQ75_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HCS1975784.1"
                     /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR
                     VPVNDTAQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVVLRF
                     VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
                     LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT
                     LPGDSGSPLMLHTNDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK"
     gene            complement(3168..3497)
                     /gene="mdtI"
                     /locus_tag="OQQ75_001406"
     CDS             complement(3168..3497)
                     /gene="mdtI"
                     /locus_tag="OQQ75_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtI"
                     /protein_id="HCS1975785.1"
                     /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA
                     VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG
                     MIMVKLA"
     gene            complement(3484..3849)
                     /gene="mdtJ"
                     /locus_tag="OQQ75_001407"
     CDS             complement(3484..3849)
                     /gene="mdtJ"
                     /locus_tag="OQQ75_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtJ"
                     /protein_id="HCS1975786.1"
                     /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS
                     YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI
                     KSGTRKARKPELEVNHGAV"
     gene            4261..5295
                     /gene="tqsA"
                     /locus_tag="OQQ75_001408"
     CDS             4261..5295
                     /gene="tqsA"
                     /locus_tag="OQQ75_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2 transporter TqsA"
                     /protein_id="HCS1975787.1"
                     /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA
                     VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM
                     TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMLSIFLLLLTVLF
                     MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL
                     DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG
                     NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI
                     AVLLSDLNKE"
     gene            complement(5320..6708)
                     /gene="pntB"
                     /locus_tag="OQQ75_001409"
     CDS             complement(5320..6708)
                     /gene="pntB"
                     /locus_tag="OQQ75_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HCS1975788.1"
                     /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA
                     LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR
                     HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV
                     SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG
                     TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR
                     ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND
                     TVNPAAQDDPKSPIAGMPVLEVWKAQDVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD
                     AKASVDAILKAL"
     gene            complement(6719..8251)
                     /gene="pntA"
                     /locus_tag="OQQ75_001410"
     CDS             complement(6719..8251)
                     /gene="pntA"
                     /locus_tag="OQQ75_001410"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HCS1975789.1"
                     /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS
                     FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM
                     QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA
                     GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE
                     EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK
                     TGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL
                     LKLLCKEKDGNITVDFDDVVIRRVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE
                     EKCACSPWRKYALMALAIILFGWLASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH
                     TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR
                     KN"
     gene            8775..9719
                     /locus_tag="OQQ75_001411"
     CDS             8775..9719
                     /locus_tag="OQQ75_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1975790.1"
                     /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG
                     RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR
                     VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA
                     NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA
                     SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE
                     VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK"
     gene            9905..11287
                     /locus_tag="OQQ75_001412"
     CDS             9905..11287
                     /locus_tag="OQQ75_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1975791.1"
                     /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG
                     ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY
                     LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT
                     LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLVLGVPVWEQVKNTMLITLWVFIGVEGAV
                     VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM
                     MGPWGEIIIAASLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL
                     WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG
                     ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA
                     SVPATWMLVG"
     gene            11324..12046
                     /gene="folM"
                     /locus_tag="OQQ75_001413"
     CDS             11324..12046
                     /gene="folM"
                     /locus_tag="OQQ75_001413"
                     /EC_number="1.5.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydromonapterin reductase"
                     /protein_id="HCS1975792.1"
                     /translation="MGKAQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI
                     DGLIKAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKLGAPLADVL
                     ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALD
                     NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD
                     YLLTSCFVTGRSFPLDGGRHLR"
     gene            complement(12043..12366)
                     /locus_tag="OQQ75_001414"
     CDS             complement(12043..12366)
                     /locus_tag="OQQ75_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlpM family protein"
                     /protein_id="HCS1975793.1"
                     /translation="MKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVAS
                     ERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIIC
                     WIKLH"
     gene            12492..13211
                     /gene="rstA"
                     /locus_tag="OQQ75_001415"
     CDS             12492..13211
                     /gene="rstA"
                     /locus_tag="OQQ75_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416125.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RstA"
                     /protein_id="HCS1975794.1"
                     /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE
                     NPDLVLLDIMLPGKDGITICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT
                     MPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI
                     SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRNVDVAISRLRKKLLDNAA
                     EPYRIKTVRNKGYLFAPHAWE"
     gene            13215..14516
                     /gene="rstB"
                     /locus_tag="OQQ75_001416"
     CDS             13215..14516
                     /gene="rstB"
                     /locus_tag="OQQ75_001416"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RstB"
                     /protein_id="HCS1975795.1"
                     /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN
                     SSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA
                     LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH
                     WQDMLKLEAAAQRFGDGHLYERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG
                     IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH
                     LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRY
                     CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA
                     IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA"
     gene            14592..15521
                     /gene="tus"
                     /locus_tag="OQQ75_001417"
     CDS             14592..15521
                     /gene="tus"
                     /locus_tag="OQQ75_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication terminus site-binding protein"
                     /protein_id="HCS1975796.1"
                     /translation="MARYDLVDRLNTTFRQMEQELAAFAAHLEQHKLLVARVFSLPEV
                     KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV
                     DNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRSLT
                     VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD
                     IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE
                     LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD"
     gene            complement(15518..16921)
                     /gene="fumC"
                     /locus_tag="OQQ75_001418"
     CDS             complement(15518..16921)
                     /gene="fumC"
                     /locus_tag="OQQ75_001418"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HCS1975797.1"
                     /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL
                     IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS
                     NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL
                     IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS
                     LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ
                     AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT
                     MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE
                     PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF
                     DSWVRPEQMVGSMKAGR"
     gene            complement(17064..18710)
                     /gene="fumB"
                     /locus_tag="OQQ75_001419"
     CDS             complement(17064..18710)
                     /gene="fumB"
                     /locus_tag="OQQ75_001419"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS1975798.1"
                     /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP
                     EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL
                     PTCQDTGTAIIVGKKGQRVWTGGCDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL
                     LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW
                     IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG
                     RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ
                     LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK"
     gene            18909..20084
                     /gene="manA"
                     /locus_tag="OQQ75_001420"
     CDS             18909..20084
                     /gene="manA"
                     /locus_tag="OQQ75_001420"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416130.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HCS1975799.1"
                     /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS
                     SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK
                     RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP
                     VAGAHPAIAHFLQQPNAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR
                     LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG
                     LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT
                     ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL"
     gene            20185..21693
                     /locus_tag="OQQ75_001421"
     CDS             20185..21693
                     /locus_tag="OQQ75_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HCS1975800.1"
                     /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL
                     KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP
                     LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
                     PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK
                     TDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL
                     DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY
                     QEKVTEAFFSALPLMLKGDPVITVAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA
                     QEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFR
                     LTTLQDNTITTSLQYTNGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ"
     gene            complement(21909..23174)
                     /gene="uidC"
                     /locus_tag="OQQ75_001422"
     CDS             complement(21909..23174)
                     /gene="uidC"
                     /locus_tag="OQQ75_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide uptake porin UidC"
                     /protein_id="HCS1975801.1"
                     /translation="MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRA
                     DKPSAGAGRDIYAWVQRGLFDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGD
                     KSFGFALGAVKIKPCENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALG
                     YWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDT
                     SRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETA
                     LVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVN
                     YRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKG
                     REKRDGSTLGDRLNYWDVKMSIQYDFMLK"
     gene            complement(23213..24586)
                     /gene="uidB"
                     /locus_tag="OQQ75_001423"
     CDS             complement(23213..24586)
                     /gene="uidB"
                     /locus_tag="OQQ75_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide transporter"
                     /protein_id="HCS1975802.1"
                     /translation="MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVACVGAA
                     AAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD
                     WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV
                     CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLK
                     ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYERYVLNDTGLFTVLVLVQNLVG
                     TVASAPLVPGMVARSGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG
                     VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI
                     ANQVQTPEVIMSIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKKVQQQ
                     LISDITN"
     gene            complement(24583..26383)
                     /gene="uidA"
                     /locus_tag="OQQ75_001424"
                     /pseudo
     CDS             complement(24583..26383)
                     /gene="uidA"
                     /locus_tag="OQQ75_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416134.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
     gene            complement(26771..27361)
                     /gene="uidR"
                     /locus_tag="OQQ75_001425"
     CDS             complement(26771..27361)
                     /gene="uidR"
                     /locus_tag="OQQ75_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator UidR"
                     /protein_id="HCS1975803.1"
                     /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS
                     PGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQR
                     ALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLL
                     DLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS"
     gene            complement(27590..28357)
                     /gene="hdhA"
                     /locus_tag="OQQ75_001426"
     CDS             complement(27590..28357)
                     /gene="hdhA"
                     /locus_tag="OQQ75_001426"
                     /EC_number="1.1.1.159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-alpha-hydroxysteroid dehydrogenase"
                     /protein_id="HCS1975804.1"
                     /translation="MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN
                     ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK
                     PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA
                     SSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRL
                     GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN"
BASE COUNT         7063 a         7322 c         6815 g         7200 t
ORIGIN      
        1 cagaacaatt cgattttcct aacctatgta taagcctgat ccacaggcat atttagcaag
       61 gatttcaagt gagccgtact acaactgttg atggcgctcc ggcaagcgac actgacaagc
      121 aaagcatttc tcagccaaat caatttatta aacgcggtac gccgcaattt atgcgcgtca
      181 ccctggcgct gttctctgcc ggactggcaa cctttgcact cctctattgt gtgcagccta
      241 tccttccggt gctttcgcag gagtttggct taacccccgc gaacagtagt atttcactgt
      301 ccatttccac ggcgatgttg gctattggtt tgctgtttac tggcccccta tccgatgcca
      361 ttggtcgcaa accagtgatg gtcacggcgc tactgttggc ctccatttgt acgttatttc
      421 gacaataatg accagctggc acggcatttt gattatgcgc gccttgattg ggctttcgtt
      481 aagtggcgtg gcagctgttg gcatgactta tcttagcgag gaaatccacc ccagtttcgt
      541 ggccttttcg atggggttgt atatcagcgg caactcaatt ggcggcatga gcggacgctt
      601 aattagtggt gtcttcacgg actttttcaa ctggcgaatt gctctggcgg caatcggttg
      661 tttcgcgcta gcctcggcgt tgatgttctg gaaaatcctt ccggaatcac gccattttcg
      721 cccgacttcg ctgcgaccta agacgttgtt tatcaacttt cgtctgcact ggcgtgaccg
      781 gggattaccg ttattgttcg cagaaggctt tttgctgatg gggtcgttcg tcacgctgtt
      841 taattacatc ggctatcggt tgatgctttc cccctggcat gtcagtcagg ccgtggttgg
      901 cttattatcg ctggcttatt tgaccggtac acggagctca cccaaagccg gaaccatgac
      961 cacccgctac gggcgcggtc cggtgatgtt gttttcgacg ggggttatgc tgtttggttt
     1021 actgatgacc ttattcagct cgctgtggct gatctttgcc ggaatgttac tcttctcagc
     1081 aggattcttc gcagcccact cagttgccag cagctggatc ggcccccgcg caaaacgcgc
     1141 taaaggccag gcctcctcgc tgtatctgtt cagttactat ctggggtcga gtattgccgg
     1201 gacgctgggt gatgttttct ggcataacta tggctggaac ggcgtcggcg catttattgc
     1261 tctgatgctg gtcattgctc tgctggtcgg gacgcgtttg catcgtcgtc tgcacgcctg
     1321 aaaaataagc ccggactgcg gtaactacac gtccggactt attgcttgct caaaccaacg
     1381 ttaatagcca tcctaaaata gacgaagcgc cagccaattc ccgcagtgcg tctagcgtca
     1441 tcaggattat aagtacccaa ataaacggat tcattttgct gtgtgtcatt tattactgat
     1501 gcgcagttat tctaccgctt tgtaagtagt aaaatagtta acccgatcaa gactactatt
     1561 attggtagct aaatttccct taagtcacaa tacgttatta tcaatgctgt aatttattca
     1621 gcgtttgtac atatcgttac acgctgaaac caaccactca cggaagtctg ccattcccag
     1681 ggatatagtt atttcaacgg ccccgcagtg gggttaaatg aaaaaacaaa ttgagggtat
     1741 gacaatgaaa aaagtattag ctctggttgt tgccgctgct atgggtctgt cttctgccgc
     1801 ctttgctgca gagactgcga cgaccaccaa agcagcgccg gcgaaaacga cacatcataa
     1861 aaaacagcat aaagcagcac ctgcccagaa agcgcaggca gctaaaaagc atcataaaaa
     1921 tacgaaagct gaacagaaag cccctgaaca aaaagcgcag gcagcgaaga aacacgccgg
     1981 gaaacacagt catcagcaac cggcaaaacc tgctgcacaa cccgcagcgt aagttttcaa
     2041 cagtaatgct ggcgcgcccc ctcgcgcctg aaaattacgg tgctaagcgg gtaacgttta
     2101 gcaccgcctt tagcggaggg tagtatggtg ggccgttatc gctttgagtt cattcttatc
     2161 atccttattt tatgcgcact gattgccgct cgtttttatc tttcctgact gtagttatct
     2221 gattttactc ccactttcat cccgtcccgt ctatagtatt tatgagggtt tgcttttaat
     2281 aatcataatt acccaccaga gtgtgatatg cgtacaacca ttgctgtagt gttgggtgca
     2341 attagtttga cgtctgcttt tgtgtttgca gataaaccag acgttgccaa atcggcaaac
     2401 gatgaggtca gcaccctgtt ttttggtcat gatgatcgtg tgccagtgaa tgacacggcc
     2461 caatcaccgt gggatgcggt tgggcaactg gaaacggcca gcggcaattt atgtacggcg
     2521 acgctgattg cacccaatct ggcattaacg gcaggacact gtttattgac acctccaaag
     2581 ggtaaagccg ataaagcagt ggtgctgcgt tttgtgtcaa ataaaggtct ttggcgctat
     2641 gagatccacg acatagaagg ccgcgttgat ccgacactgg gaaagcggtt aaaagcagat
     2701 ggggatggtt ggattgtacc tcccgcagcc gcgccgtggg acttcggatt gattgtgcta
     2761 cgtaatcccc cttctggcat tacaccgttg ccgttatttg agggagataa agccgcgctt
     2821 actgccgcat taaaatcggc tggccgtaaa gtaactcagg cgggataccc tgaagatcat
     2881 ctcgatacgt tgtacagtca tcaaaactgt gaagtgactg gctgggcgca aacgtcggtg
     2941 atgtcacatc agtgcgatac cttgccgggt gacagcggtt cgcctctgat gttgcatacc
     3001 aatgacggct ggcaattaat tggggtgcaa agttcggctc ctgccgcgaa agatcgctgg
     3061 cgcgccgata accgggccat ttctgttacc ggttttcgcg acaagctgga tcaactgtcg
     3121 caaaaataat gttcaaacgc tgcccgactg tgcgggcagc gtgttcatca ggcaagtttc
     3181 accatgatca ttccagccaa cagcaagacc aggccaatcc agcctttacg atttaaccgt
     3241 tgaccaaaca agatccaacc tgcggctaac gtggcggcaa taccaaaccc gccccacaat
     3301 gcataagcga cagacaagtc gatcccttta acggcctgag aaagcgcact aaaggcagcc
     3361 agcaccgccg ccagggagag caagccaaat attttgcgac gaaagccgtc agaaaatttc
     3421 aaaaagacgt tagcaacgat ttccagcacg attgccaatg ccagccaggc ggcgtgaacc
     3481 cattcaaact gcgccatggt ttacctccag ttcaggttta cgcgctttac gggtacctga
     3541 ttttatcaac acaatcccgg cgaccagggt ggttaacccg gcaattttca tcagcgataa
     3601 actttcgtcg aataacaaaa cgctaaacaa ggtaataaat aaaataccga taccttccca
     3661 cagcgcataa gctacgccta aggcgatctt tttaacggcg aaagagagaa atatatacga
     3721 cagagaaatc atcaccagca ttaaaataaa gccgccattt ccctcactga cgctcgccca
     3781 tttcattgat agcgtaccgg taatttctgt agcaatagcc aggcctaata aaatccaata
     3841 aatatacatt gtccttctcc tgcaagagaa ttattttaat tttcgcttaa ttcagcgaaa
     3901 ttaaagtaaa gtggtcaagc cccgcgcata gggcaagctt aggcagaaga aaggactaaa
     3961 gcgcgttgcg ccagtgctgc tcacctacga gcaagatagt ggatgaggta caaagatggg
     4021 taaatgttga aaataaggtc ctgaacaaat tgtccataat attacaatta tccgcagtgt
     4081 tgcttctcgt catcgcggat gataattgtc ctcggtagtt gaacacgcct gatttgtatc
     4141 atagcttaag aattaactca aaatattttc acttctttac ctgagcggtt tgattttcgt
     4201 tatgatgacg gagcgaaaaa gacattatta ttagcaaagg aagaaaaaac ggggacaagc
     4261 atggcaaagc cgatcatcac gctcaatggc ctaaaaatcg tcattatgtt gggaatgctg
     4321 gtcattattc tctgcggtat ccgttttgcc gccgagatca tcgtgccgtt tattctcgca
     4381 ttatttattg ctgttattct taacccgctg gtgcaacaca tggtccgctg gcgagtgccg
     4441 cgtgtactgg cggtgtcgat tttgatgacc atcatcgtga tggcgatggt gttgctatta
     4501 gcttatctgg gttccgcgct caacgagttg acgcggacgt taccgcaata tcgcaactct
     4561 attatgacgc cgctgcaagc tcttgagccg ttgttgcaac gcgtagggat tgacgtctca
     4621 gttgaccagc tggcgcatta cattgatccg aacgcagcga tgacgttgct caccaactta
     4681 ttgacgcagt tatctaatgc catgttatca atatttttat tgctgctgac ggtgctgttt
     4741 atgctgctcg aagtgccaca attgcccgga aaatttcagc aaatgatggc gcgtccggtt
     4801 gaagggatgg cggcgattca acgtgcaatt gacagtgttt ctcattatct ggtgctgaaa
     4861 acagccatca gcatcatcac cggcctggtc gcctgggcga tgctcgccgc actcgatgtt
     4921 cgcttcgctt ttgtctgggg attgctggcc tttgcgctta attacatccc taatattggt
     4981 tcagttctcg cggcaatccc ccctatcgct caggtactgg tgtttaatgg cttttacgaa
     5041 gcgttgctgg tgctggcggg atatctgctg attaatctgg tcttcggcaa tattctggag
     5101 ccgcgcatca tgggacgtgg gctggggctt tccacattgg tggtattttt gtcgttgatt
     5161 ttttggggat ggttgttagg accggtgggt atgctgcttt ccgtgccgtt aacaattatt
     5221 gtcaaaattg cgcttgaaca aacagcggga ggtcaaagca tcgccgttct gttaagcgat
     5281 ctcaataaag agtgacggcc tccgcagagg ccgtcagggt tacagagctt tcaggattgc
     5341 atccacgctg gctttggcgt caccaaacag catgtgggtg ttttccttga agaacagcgg
     5401 gttttgcaca ccagcatagc cagtgttcat cgaacgttta aagacaatca cgtcctgcgc
     5461 tttccacact tccagcacag gcataccagc aataggactc ttcggatcat cctgcgccgc
     5521 cgggttaacc gtatcgttag caccaatcac cagtacggta tcggtatcag caaagtcatc
     5581 gttgatctcg tccatttcca gcacgatgtc atacggtact tttgcttcag ccagcaatac
     5641 gttcatatgt ccaggcaaac gccccgcaac cgggtggata ccgaaacgca cgttgatacc
     5701 acgagcgcgc agtttctcgg taatttcagc gacaggatat tgcgcctgcg cgactgccat
     5761 gccgtacccc ggagtaatga tcactgaatg ggagtttttc agcagttccg ctgtctcttc
     5821 tgcggtgatt tcgcggtgct cgcccacttc ctgatcatcg ccagtagaag agccgtcggt
     5881 gccgaaacca cccgcaataa cgctgataaa ggaacggttc atcgccttac acataatgta
     5941 agaaaggata gcccccgaag aaccgaccag cgcaccggtc acaatcagca ggtcgttgct
     6001 gagcataaag cccgcagccg cagccgccca gccggagtac gagttcagca tcgacaccac
     6061 cactggcata tctgcaccac cgatggaggc gactaaatgc cagccgaata ccagcgcaat
     6121 ggcggtcatt attagcaatg ccagcacttg caggccgacg ctgtccgtgc gaacaaatac
     6181 aatcagcagc aggaaggaaa cgaccagagc cgccaggttc attttgtgac ggtttggcag
     6241 catcaacggt ttagacgaaa tcttgccaca cagtttgccg aacgccacca ccgaacccgt
     6301 gaacgttacc gccccgatga agataccgag gaacacttcc gtcaggtgaa tattgaccag
     6361 aatcggtgcc attcccgcgt catgatgcag atagctgtta aagccaacca gcactgccgc
     6421 cagacccacg aagctgtgca ggatcgccac cagttctggc atttcggtca tttcaacttt
     6481 cttcgccaga cggataccaa ttgccccacc aatgaccatc gccagcaaga tccagccaac
     6541 attacccgta tccggtccaa aaatggttgc gattaacgca atcgccatcc ctgcgatacc
     6601 gaagttgtta ccctggcgag acgtttcatg tttcgaaaga ccggccagac tgaagataaa
     6661 caggatcgcg gcaacaatgt atgcagctgt aactaatcct ccagacatat gttacccctt
     6721 aatttttgcg gaacattttc agcatgcgct gagtcacggt gaagccaccg aaaatattaa
     6781 tgctggctat aagcaccgcg ataaaactaa ggaagctaac ccagccgccc tggccaatct
     6841 gcaacagtgc tccgacaaca ataatccctg aaatcgcgtt ggtgaccgac atcaacggtg
     6901 tatgcagcgc gtgcgataca ttccacacca cgtaataacc gacaacgcag gccagcgcga
     6961 aaacggtgaa gtgcccaaga aactctttcg gcgcaacgct tgccagccaa ccgaaaagga
     7021 tgattgccag cgccatcaac gcgtatttac gccacggtga gcaggcacat ttttcctcag
     7081 ttttcacttc cggtgccgct ttttgtgccg cctgcggctg agctgatacc tgaatcggcg
     7141 gtgccggcca ggtaatttcg cccgcacgga tcacggtcac gcggcgaatc accacatcat
     7201 caaaatcaac agtgatattg ccgtctttct ctttgcacaa cagtttcagc agattaacga
     7261 ggttagtacc gtaaagctgc gaggattgcg tcggcagacg gcccggaaga tcggtataac
     7321 caatcacttt gacaccattt tccgtagtga agatttcacc cggcacggtg tattcacagt
     7381 tgccaccgtt ttgggctgcc aggtcgacaa tcacactgcc cgtcttcatg gagtcaacca
     7441 tttcacgggt aattagcttc ggcgctggtt tgcctggaat aagcgcggtg gtgacaatga
     7501 tatcgacctc ttttgcctgg gcggcaaaga gttccatttc tgctttaatg aacgcgtccg
     7561 acatcacttt ggcatagcca tcgccgctgc ccgcttcctc tttaaaatcc agctcgagga
     7621 attccgcgcc catactttga acttgttctt tcacttccgg acgggtgtcg aatgcacgca
     7681 caatcgcgcc gagactgttt gctgcgccaa tggcggccag acctgcaaca cccgcaccaa
     7741 tcaccatcac ttttgccggt ggcactttcc cggccgcagt aatttgcccg gtaaagaagc
     7801 gcccaaattc atgtgccgct tcaacaatgg cgcgataacc ggcgatgttc gccatcgagc
     7861 ttagtgcgtc cagcgattgt gcgcgtgaga tacgcggcac agaatccatc gccatcacgg
     7921 tcacgttacg ttccgcaagt ttttgcatta attccggatt ctgcgcaggc cagataaaac
     7981 tcaccagcgt tgtcccagga ttcagtaacg caatttcatc atctaacggc gcattgacct
     8041 tcagaatgat ctctgactgc cagacgctat tcccttctac aatttcagcg cccgcttgca
     8101 caaacgcttt atcgtcaaaa cttgccagtt gacccgcgcc gctctctacc gcgacggtaa
     8161 aacccagttt cagcagctgt tccactgttt ttggcgttgc tgcaacacgg gtttcattgg
     8221 ttaaccgttc tcttggtatg ccaattcgca tgatattccc ttccatcggt tttattgatg
     8281 atggtttgcc tgtgtcagga gccacacaag ccgctcatgt acgagctaaa tgttactccg
     8341 ttaaaataaa ttagtaacaa acgccctata acgtactgaa aattatacct gtgatctagc
     8401 gccaaaaatc agtatttcgg cgtgaactcg caaaatatta acgattcagc cgtgatagtg
     8461 ggataaacac cttagaacgc cggataaaga ctgataattg tcttcgacgg tcgggtaaaa
     8521 cgagacatcg ccccggcacg attcactact taacattaaa ttaacttata caattcagtt
     8581 gcttcagtag taatgatgct gatacggctg ttttttaagc atagacggtc atttgagcag
     8641 gattaaaatt ggcttaagga atgtgatatg aaaaatgacg cagacagtta caccgtttaa
     8701 atgcaataat cagccacgtt tctcgttaat aacaatacca gtacctggtt tgcgcaaggc
     8761 gaaggattat ttttatgaag cttaagaaca ccctcctggc gtcggcactg ctttctgcta
     8821 cggcattctc cgttaacgca gcaacagaac tgacaccgga gcaagcggca gcggttaaac
     8881 cttttgaccg tgtagtggtt accggtcgtt ttaatgctat tggcgaagcg gtgaaagccg
     8941 tttctcgtcg cgcagataaa gaaggtgccg cctcttttta tgttgtcgac acttctgatt
     9001 ttggtaacag cggtaactgg cgtgtggtcg ctgacctcta taaagccgat gctgaaaaag
     9061 cagaagaaac aagtaatcgc gtaattaacg gtgttgtcga actgccgaaa gatcaggctg
     9121 ttctgattga accgtttgac acggtcaccg tccagggctt ctatcgtagc cagccagaag
     9181 tcaatgatgc catcaccaaa gcggcaaaag cgaaaggtgc ctactctttc tacatcgttc
     9241 gtcaaatcga tgccaaccag ggcggcaacc agcgtattac tgcattcatc tataaaaaag
     9301 atgctaagaa acgtatcgtc cagagcccgg atgtgatccc ggcagattcc gaagcaggac
     9361 gtgcagctct ggctgccggt ggcgaagccg cgaagaaagt tgagatccca ggtgttgcga
     9421 ctaccgcatc accaagttct gaagtcggtc gtttctttga aacccagtca tcaaaaggcg
     9481 ggcgttacac cgtcacgctc ccggatggca ctaaagtcga agaactgaac aaagcgaccg
     9541 cagcgatgat ggtcccgttc gatagcatca aattctctgg caactacggc aacatgaccg
     9601 aagtctccta tcaggttgcg aaacgtgccg cgaagaaagg tgctaagtat taccacatca
     9661 cccgccagtg gcaggaacgt ggtaataacc tgaccgtcag cgcagatctg tataaataac
     9721 tattcagtta ctcctataag gcggcttgat gccgcctttc gcatttttag tcacaaattt
     9781 ccccgcgacc attgcatgca gacacatctc ttcgtaaaat cccgcgcttc agtggcaaac
     9841 tccattttta tgcgttttgc cctaatattt attcttctta tcacgtttta atcactggat
     9901 atcgatggaa aagaaactgg gactgagcgc actcaccgcg ctggtattaa gctcaatgct
     9961 gggcgcgggt gttttcagtc tgccgcaaaa tatggcggca gttgccagcc cggcagcact
    10021 gctcatcggc tggggtatta ctggcgctgg cattttattg ctggcctttg ccatgctgat
    10081 cctcacgcgc attcgtcccg aacttgacgg cggtatcttt acctatgccc gcgaagggtt
    10141 tggcgagcta atcggctttt gttccgcatg gggatactgg ctgtgcgcag tcatcgccaa
    10201 cgtctcctat ctggtgatcg ttttttccgc gttaagcttt tttacggaca cgccggaatt
    10261 gcgcctgttc ggcgatggta atacctggca atcgatcgtc ggtgcatcgg ctttattgtg
    10321 gattgttcac tttttgatcc tgcgcggggt gcaaaccgct gccagcatta acctggtggc
    10381 gacactggca aaattgttgc cgctgggtct gtttgttgtg ctggcgatga tgatgttcaa
    10441 actggatacc ttcaagctcg acttcaccgg acttgtactt ggcgtacccg tttgggaaca
    10501 ggtgaaaaac accatgctga tcaccctgtg ggttttcatt ggtgtggaag gtgccgtggt
    10561 tgtttctgcg cgtgcgcgta ataaacgtga tgttggcaaa gcgacactgc tggcggttct
    10621 ctccgctctg ggcgtttact tgctggtaac gctgctttcg ctgggtgtgg tggcacgtcc
    10681 tgaactggct gaaattcgta acccgtcaat ggccggtctg atggtggaaa tgatgggacc
    10741 atggggcgaa atcatcatcg ctgccagttt gatcgtttcc gtttgcggcg cgtacttaag
    10801 ctggaccatc atggcggcag aagttccgtt cctggctgcc actcataaag cattcccacg
    10861 catttttgcg cgccagaacg cacaagctgc gccatccgcc tcactgtggt tgaccaacat
    10921 ctgcgtgcaa atttgtctgg tactcatctg gctgaccggt tccgattaca acacgttgct
    10981 gaccatcgcc tcagaaatga ttctggtgcc ctatttcctg gtcggcgcgt tcttgctgaa
    11041 aatcgcaacc cgtccactgc ataaagcggt aggtgtcggt gcctgcattt atggcttatg
    11101 gttattgtac gcctctggtc caatgcactt gctgttatcc gttgttctgt atgcgccggg
    11161 gctgctggtt ttcctgtatg cgcgcaaaac gcatacacat gataatgtac tgaaccgtca
    11221 ggaaatggtg ctgattggca tgctgttaat tgcctcagtt ccggcgacct ggatgctggt
    11281 gggataacgt tcatcccatc gttggatagc aaaggagata acgatgggta aagcccagcc
    11341 cttgccaata ttaattactg gcggaggtcg tcgcatcggc ctcgccctcg cctggcattt
    11401 cattaatcaa aagcaaccgg tgattgtcag ctatcggacg cactatccag ccattgatgg
    11461 actgattaag gcaggtgcgc agtgtattca ggctgatttt tcgaccaacg acggtgtgat
    11521 ggcgtttgcc gatgaagtac taaaaagcac ccatggtctg cgtgctattt tgcataacgc
    11581 cagtgcgtgg atggcggaaa aactgggtgc gccactggcc gacgtactgg cttgcatgat
    11641 gcagatccac gttaataccc catacctgct caaccatgcg ctggaaagat tactgcgtgg
    11701 gcacggacac gccgccagcg atatcattca ctttaccgat tatgtggtgg agcgcggtag
    11761 cgacaagcat attgcgtatg ctgcaagcaa agcggcactg gataatatga cccgctcgtt
    11821 tgcccgcaag ctggcaccgg aagtgaaagt gaattctatt gctccatcgc tgatcctgtt
    11881 taatgaacat gatgatgccg aatatcgaca acaggcgctg aataaatcac tgatgaaaac
    11941 cgcgcctggc gagaaagaag tgatcgacct ggtcgattac ttacttacca gttgctttgt
    12001 caccggacgc agtttcccac ttgatggcgg tcgtcatctg cgttaatgca gctttatcca
    12061 gcatataatc aacacccatg cgcttatccc ccaacacgca acagaaccaa caaaagcggc
    12121 gggcaagcgc atcattccgg tgaaatacca cagcgacacc aggtaaacaa aatagggaat
    12181 aatcgaccac atactaaaaa tgatggttgc gcgtaaggct tcaatgccgc gttcgctggc
    12241 aacaatataa tgcgcgataa gcgcaaaggt cgggaaaagt ggaatcagcc cggcgatata
    12301 ataatttttc gtttttgcta aaacaccaat caacagcact accagcgcac cgagcgcggc
    12361 tttgatttta ccttaacact tccataacaa gtcatcagta gaatacctga tgaaaacttg
    12421 tttagaaacg attgatagta agtaaaaaca gcgcggtgta ttgtgacgtt tttatatcta
    12481 ccgtgaatgt tatgaacact atcgtatttg tggaagatga tgcggaagtc ggttcactga
    12541 ttgccgcgta cctggcaaaa catgatatgc aggttaccgt agagccgcgc ggcgaccagg
    12601 ccgaagaaac cattttgcga gaaaatccgg atttggtgtt actcgacatc atgctaccag
    12661 gcaaggacgg cattaccatt tgtcgtgatt tacgcgcaaa gtggtctgga ccgattgttc
    12721 ttctaacctc tctcgatagc gatatgaacc acatcctggc actggaaatg ggtgcctgcg
    12781 actatattct caaaacgatg ccccctgctg ttttgctagc gcgtttacgt ttgcatttgc
    12841 gtcagaatga gcaagccaca ctgaccaaag gtcttcagga aacgtctctg actccctaca
    12901 aagccctgca tttcggcacg ttgaccatcg atcccatcaa ccgcgtagtc accctggcta
    12961 acactgaaat ctcgctctcg acagctgatt tcgaattatt gtgggaatta gctacccatg
    13021 ccgggcaaat catggaccgc gatgcattgc tgaaaaattt acgcggcgtc agttatgacg
    13081 gactggatcg taacgtggac gtggctattt cgcggttaag aaaaaaactg ctcgataacg
    13141 ccgcagaacc ttatcgcatt aaaactgtgc gtaacaaagg ctatcttttt gcgcctcatg
    13201 catgggaata agcgatgaaa aaactgttta tccagtttta cctgttattg tttgtctgct
    13261 tccttgtgat gtctctgctg gttgggttgg tgtacaaatt taccgccgaa cgcgcgggca
    13321 aacagtcgct ggatgatttg atgaacagtt cgctgtatct gatgcgcagc gaattgcgtg
    13381 agatcccccc acacgactgg ggtaagacgc tgaaagagat ggatttaaat ctctctttcg
    13441 atctgcgtgt cgagccactg agtaaatacc atcttgatga tatttccatg caccgactgc
    13501 gtggcggcga aattgtcgcc ctggacgatc agtacacgtt tttgcagcgt atcccgcgca
    13561 gccactacgt gctggcagtt ggtcctgttc cttatcttta ttatctccat cagatgcgat
    13621 tgctggatat cgccctgatc gcttttattg ctatttccct cgcctttccg gtgtttatct
    13681 ggatgcgtcc gcactggcag gatatgttaa aactggaagc agcggcgcaa cgatttggcg
    13741 atgggcatct ctatgagcgt atccactttg atgagggttc gagctttgaa cgacttggta
    13801 tcgcatttaa ccagatggcg gacaatatca acgccttgat tgccagcaaa aaacagctta
    13861 ttgacggtat cgctcacgaa ctgcgaacac cgttagtgcg cctgcgttat cgactggaga
    13921 tgagcgataa cctgagcgcc gccgagtccc aggcgttgaa tcgtgatatc agtcaacttg
    13981 aagctttaat tgaagagctg ctgacttatg cccgactcga tcgcccacaa aacgagcttc
    14041 atcttagcga accagacctg ccgttgtggc tgtcaacgca tctggcagat attcaggcag
    14101 taacgcccga taaaacggta cggataaaaa cgctcgtgca aggccattat gcggcgttgg
    14161 atatgcgctt aatggagcgc gtgctggata atttgctcaa taacgccctg cggtactgcc
    14221 attcaacggt tgaaaccagc ctgctactgt cggggaatag agcgacatta attgttgagg
    14281 atgatggccc agggattgcc ccagaaaacc gcgaacatat ctttgaacct tttgttcgcc
    14341 tcgatcccag ccgggatcgc tcaaccggcg gctgcgggct ggggctggca attgtccact
    14401 ctatagcact ggcaatgggc ggtacggtta attgtgacac cagcgaactg ggtggtgctc
    14461 gcttctcgtt tagctggccg ttatggcata acatcccgca atttacctct gcctgacact
    14521 acgcgcacga tggtcaagtc accaccattg tgctataaat taaggatgtt gtaactaaag
    14581 tggttaatat tatggcgcgt tacgatctcg tagaccgact caacactacc tttcgccaga
    14641 tggaacaaga gctggctgca tttgccgctc atcttgagca acacaagcta ttggttgccc
    14701 gcgtgttctc tttgccggag gtaaaaaaag aggatgagca taatccgctt aatcgtattg
    14761 aggtgaaaca acatctcggc aacgacgcgc agtcgctggc gttgcgtcat ttccgccatt
    14821 tatttattca acaacagtcc gaaaatcgca gcagcaaagc cgctgtccgt ctgcctggcg
    14881 tgttgtgtta ccaggtcgat aacctttcgc aagcagcgtt ggtcagtcat attcagcaca
    14941 tcaataaact caagaccacg ttcgagcata tcgtcacggt tgagtcagaa ctccccaccg
    15001 cggcacgttt tgaatgggtg catcgtcatt tgccggggct gatcaccctt aatgcttacc
    15061 gctcgctcac cgttctgcac gaccccgcca ctttacgttt tggctgggct aataaacata
    15121 tcattaaaaa tttgcatcgt gatgaagtcc tggcacagct ggaaaaaagc ctgaaatcac
    15181 cacgcagtgt cgcaccgtgg acgcgcgagg agtggcaaag aaaactggag cgagagtatc
    15241 aggatatcgc tgccctgcca cagaacgcga agttaaaaat caaacgtccg gtgaaggtgc
    15301 agccgattgc ccgcgtctgg tacaaaggag atcaaaaaca agtgcaacac gcctgcccta
    15361 caccgctgat tgcactgatt aatcgggata atggtgcggg cgtgccggac gttggtgagt
    15421 tgttaaatta cgatgccgac aatgtgcagc accgttataa acctcaggcg cagccgcttc
    15481 gtttgatcat tccacggctg cacctgtatg ttgcagatta acgcccggct ttcatactgc
    15541 cgaccatctg ttctggccgt acccagctgt caaactcggc ttcgctaaga taccccagcg
    15601 caagggccgc agcttttaag gtcagccctt ctttatgcgc ttttttggcg atctccgcgg
    15661 ctttgtcata accaatgtgg gtgttaagcg cagtcaccag catcagcgat tcattgagta
    15721 attgattgat tcgctcacga ttcggttcaa tacccactgc gcagtgtttg ttaaaacttt
    15781 ccatgccatc tgccagcaag cgcaccgatt gcaggaaatt atggatcacc atcggacgga
    15841 agacgttcag ttcaaagtta ccggaagcgc cacccatgtt gatcgccacg tcgttcccca
    15901 ttacctgaca gcagagcatg gttaatgctt cacactgggt tgggttcact ttccccggca
    15961 tgattgagct gcccggctca ttttccggga ttgagatttc accaattccg cagcgcgggc
    16021 cagaggccag ccagcggaca tcattggcga ttttcatcag tgacgcagcc aaccctttca
    16081 acgcgccgtg cgcctgaacc agggcatcac aggtcgcaag cgcttcaaat ttgttcggcg
    16141 cggtaacaaa cggtgcacag gtaatgactg ccagttcatc tgctacgcga cgcgcatact
    16201 ccggatgggt atttagtcca gtacccaccg ctgtaccgcc aagagccagt tccgctacgt
    16261 gaggcaggct gtattcgata tgtttgagat tatgctcgag catcgctacc cagccggaaa
    16321 tctcctgccc tagtgttagc ggcgtggcgt cctgcaagtg ggttcgaccg attttgacga
    16381 tatcggcaaa tgcacgcgat ttttcactca gtgtctgcgt cagggtttta agctgcggaa
    16441 tgagttgctt gcgcagcgcc agcagcgccg caacgtgcat cgccgtcgga aagacatcgt
    16501 tggaactttg gcttttgttc acgtcgtcgt tagggtgaac tttacgttcc atcccgcgca
    16561 cgccgccgag taattcactg gcccggttag ccagcacttc gttcatgttc atgttacttt
    16621 gcgtgccgga gccggtctgc cagatagcca gcgggaattc gtcgtcatgc tgtcctgcca
    16681 gtacttcatc cgccgcctgc cgaatggcgc tcgctttctc ttcagacaac aagcctaaat
    16741 cttcattaac ttttgccgct gcgcgcttgg ttagcgccag cgcatgaatc agtgaggtgg
    16801 gcattttctc cgtcgaaatg cggaaatgct ccagcgagcg ttgagtttgt gcgccccaca
    16861 gcttatctgc cgggacatca atcgccccca tcgaatcttt ttcgctgcgt actgtattca
    16921 tggcctgctc ctcacctgtt taattttttc tttctgtttt gctttcgcta agcaactttt
    16981 agctcactta ttatttacta tttgataaca agtgtttggt ctttcgtgcc atgtaaaaaa
    17041 accgccccga agggcggctc tgtttatttc acacagcgag tgcactgtgt gagttgtatc
    17101 tgctggaaga agtcatttcc tttatcatcc acaaggataa acgccgggaa atcttccact
    17161 tcaattttcc agatggcttc cattcccagt tccggatatt caacacattc caggctctta
    17221 atacttccct gcgccaatac agcggccgga ccaccgatac tgccaaggta gaagccgccg
    17281 tgttttttac aggcatccgt cacctgctgg ctgcggttgc ctttcgccag catgatcata
    17341 cttccgccct gcgcttgcag ttgatcgaca taagaatcca tccgtccggc ggtcgttggg
    17401 ccaagagaac cggaggcata accttccggc gttttggccg gacccgcgta gtaaatcgga
    17461 tgatctttaa tgtactgcgg cagcccttca ccgttatcca tccgctcttt cagtttggcg
    17521 tgagcaatat cacgaccgac gataatcgtg ccgttaagcg ataagcgtgt agaaacggga
    17581 tactgcgaca actgtgcgag gatctctttc atcggacggt taaggtcaac gcgcaccgct
    17641 tcgccttctc ccgctttacg cagctcttca gggatatatt tacctggatt atgttccagt
    17701 ttttcgatcc agatcccctg acggttgatc ttcgctttga tattacggtc agcagagcag
    17761 gaaacaccca taccaaccgg acaggatgcg ccgtgacgtg gcaggcgaat cacgcgtatg
    17821 tcgtgagcga agtatttacc accaaactgc gcacccagac cgagattttg cgcttcgatc
    17881 agcaattctt tttccagttc cacatcgcgg aatgcctgac cgtgctcatt cccttccgtt
    17941 ggcagttcgt catagtattt agcggaagcc agtttcactg ttttaaggtt agtttctgca
    18001 gaagttccac caattacgaa cgcaatatga tacggaggac aggccgccgt acccagcgtg
    18061 cgcatcttct caaccaggta atttttcagt ttccccggcg ttagtaacgc tttggtttcc
    18121 tgatagagat acgtcttgtt tgccgaacca ccacctttgg cgatacagag gaatttgtac
    18181 tcgtcgccat caacggcata aagatcgatc tgcgctggca gattggtgcc ggtattcacc
    18241 tctttataca tatccagcgg cgcgttttgc gagtagcgca aattatcttc gatataagtg
    18301 ttatagacac cgcgcgccag cgccgcttca tcacagccac cggtccatac acgctgccct
    18361 tttttaccaa caataatcgc agtgccggta tcctgacagg ttggcagaac acctttcgcc
    18421 gcgatgtcgg agttgcgcag gaattgcagc gccacatatt tatcattttc gctggcttcc
    18481 gggtcacgca gaatgtcggc cacctgttgt tggtgagccg gacgcagcat aaatgacgca
    18541 tcatgaaacg cctgacgcgc caacagagtt aacgcttcgg gtgcgacttt caaaatctcc
    18601 tgcccttcaa attcagatac gctaacgtgt tcgctggtta gcaggtaata ctcagtatca
    18661 tcttttttga gtggaaaagg agcctgataa tgaaagggtt tgtttgacat tgttctctca
    18721 cttactgcct ggtttggtta tgctctgggc gggtgttccg ttgccctgtt aaaagcgagt
    18781 aacaatatcc tacacacttt tttaacaaaa actgagacta gtacgacttt ttgcggctcc
    18841 aggttacttc ccgtaggatt cttgctttaa tagtgggatt aatttccaca ttaaaacagg
    18901 gattgatcat gcaaaaactc attaactcag tgcaaaacta tgcctggggc agcaaaacgg
    18961 cgttgactga actttatggt atggaaaatc cgtccagcca gccgatggcc gagctgtgga
    19021 tgggcgcaca tccgaaaagc agttcacgag tgcagaatgc cgccggagat atcgtttcac
    19081 tgcgtgatgt gattgagagt gataaatcga ctctgctcgg agaggccgtt gccaaacgct
    19141 ttggcgaact gcctttcctg ttcaaagtat tatgcgcagc acagccgctc tccattcagg
    19201 ttcatccaaa caaacgcaat tctgaaatcg gttttgccaa agaaaatgcc gcaggtatcc
    19261 cgatggatgc cgccgagcgt aactataaag atcctaacca caagccggag ctggtttttg
    19321 cgctgacgcc tttccttgcg atgaacgcgt ttcgtgagtt ttccgagatt gtctccctac
    19381 tccagccagt cgcaggtgca catccggcaa ttgctcactt tttacaacag cctaatgccg
    19441 aacgtttaag cgaactgttc gccagcctgt tgaatatgca gggtgaagaa aaatcccgcg
    19501 cgctggcgat tttaaaatcg gcgctcgaca gtcagcaggg tgaaccgtgg caaacgattc
    19561 gtttaatttc tgaattttac ccggaagaca gcggcctgtt ctccccgctg ttactgaatg
    19621 tggtgaaatt gaatcctggc gaagcgatgt tcctgttcgc tgaaacaccg cacgcttacc
    19681 tgcaaggcgt ggcgctggaa gtgatggcga actccgataa cgtgctgcgt gcgggtctga
    19741 cgcctaagta cattgatatt ccggaactgg ttgccaatgt gaaattcgaa gccaaaccgg
    19801 ctaaccagtt gttgacccag ccggtgaaac aaggtgcaga actggacttc ccgattccag
    19861 tggatgattt tgccttctcg ctgcatgacc ttagtgataa agaaaccacc attagccagc
    19921 agagtgccgc cattttgttc tgcgtcgaag gcgatgcaac gttgtggaaa ggttctcagc
    19981 agttacagct taaaccgggt gaatcagcgt ttattgccgc caacgaatca ccggtgactg
    20041 tcaaaggcca cggccgttta gcgcgtgttt acaacaagct gtaagagctt actgaaaaaa
    20101 ttaacatctc ttgctaagct tattaaaggc ttataacacc ttcaggcggc cagtccgcct
    20161 gatttcattt tatggataat cattatgaat aaatcgctgg tagcggtagg cgtcattgtt
    20221 gcgctaggcg tagtctggac aggcggcgca tggtatacag gcaagaagat tgaaacccat
    20281 ctcgaagaca tggtcgcgca ggcgaacgcg caactaaaac tgacagctcc tgaatccaac
    20341 ctggaagtga gttatcaaaa ctatcatcgc ggcgtattca gcagtcagtt gcaactgttg
    20401 gtgaaaccca ttgccgggaa agaaaatccg tggattaaaa gcggtcagag cgtcatcttc
    20461 aacgaatcgg ttgatcatgg tcccttcccg cttgcccagc ttaaaaaact gaacctgatc
    20521 ccgtcgatgg catcaattca aaccacgctg gttaataacg aagtaagcaa accactgttt
    20581 gatatggcaa aaggtgaaac gccttttgag attaactcgc gcattggtta cagcggtgat
    20641 tccagttccg atatttcgct caagccactg aattacgagc aaaaggatga aaaagtcgcc
    20701 tttagcggcg gcgagttcca gttaaatgct gacagagacg gcaaagccat ctccctttcc
    20761 ggggaggcgc aaagtggtcg gatagacgca gttaacgaat acaaccagaa agtgcagttg
    20821 acctttaata atctgaaaac cgacggttcc agcacgctgg caagttttgg tgagcgcgta
    20881 ggaaaccaaa aactgtcact ggaaaaaatg accatttcag tggaaggcaa agaactggca
    20941 ctgctggaag gcatggagat cagcggtaaa tcggatctgg tcaatgacgg taaaacgatc
    21001 aatagccaac tggattactc gctaaacagc ctgaaggtac agaatcagga tctgggcagc
    21061 ggcaagctga ctttaaaagt cggccagatt gatggtgaag cctggcatca gttcagccag
    21121 caatataacg cgcaaactca ggcgctgctg gcacagccag aaattgccaa caatcccgaa
    21181 ctttatcagg agaaagtgac ggaagccttc tttagcgccc tgccgctgat gttgaaaggc
    21241 gatccggtga ttactgtcgc gccgctaagc tggaaaaaca gtcagggtga aagtgcgctg
    21301 aatctgtcgc tgttcctgaa agatccggca acgactaaag aagcgccgca aacgctggcg
    21361 caggaagtag atcgttcggt taaatctctg gatgcgaaac tgaccattcc ggtggatatg
    21421 gcaactgagt ttatgactca ggtagcgaag ctggaaggtt atcaggaaga tcaagcgaaa
    21481 aaactggcga aacagcaagt tgaaggtgca tcagcaatgg ggcagatgtt ccgtctgacc
    21541 accttgcagg acaataccat caccaccagc ctgcaatata ctaacggtca gataacgtta
    21601 aatgggcaga aaatgtcgtt agaagatttt gttggcatgt ttgcgatgcc agctcttaac
    21661 gttccggctg taccggcaat tccgcagcag taattcacgg ccaaaacgcc ggagaatttt
    21721 cacttcggcg ttttcaaacc agagattgcc tgatgcgcta cgcttatcag gcctaccttt
    21781 tcctgcaata ctttgaattt atgagttttt gtaggctgga taaggcgttt acgccgcatc
    21841 cggcataaaa aacgcgcact ttgtcaacaa tctgaaacgc cggaggtttt tctctccggc
    21901 gttatttctt acttcagcat aaagtcatac tgaatactca ttttcacatc ccagtaattc
    21961 aggcgatcgc ccagcgtact gccatcgcgc ttttcccgcc ctttatcggc agcaagaaag
    22021 aaattcatcc cttgtaacgg cccttcgctg acccgatagt tcataccacc taagataccc
    22081 gtgccttcaa tccgcacatc tcgtttactg gattcatagc cgcgagtcac aatcggtgca
    22141 aatgtcagtg taaattgcgg cgttaaacga tagttgacgc ccaattgcca ggactgcatt
    22201 ccttcacggt tacgatcaag acttaatgaa aagggatagc caatgtcggt atccaccacg
    22261 gcaccattca ttgcatggcg caaataacca ccactgccaa atacgcttcc ccacggcgca
    22321 ttccaggtca attgtccact aaccaacgcc gtttcattgg gctggctggt attacgactt
    22381 aaaccttcga gctgcgcgta aaagccgagc aactcccctt tcaacgtata attcgggtcg
    22441 agcggtatgc ttttctcgag aatactttgt atctgattgg aaacatcttt ctgtaccgat
    22501 gcccccagag aatagcgact ggtatcatca tgccaactgg cggctaaaaa agaacgtgcg
    22561 cgatgtttat cgtattttcc cgtctggctg ttatacaccc cttcatcacg aataccggtt
    22621 gttgaatcag tccataaaaa tactcgtgaa cgccacattc cccacagatc aatatttggt
    22681 gttaaagccc aataacctaa tgctccttca gaaactgtcg gtaatgtacg ttgcgaactg
    22741 ccagccatta acggaatacg ataaggtaag ctaccataac tataatccgt cccgaagcga
    22801 cctaatttaa gcaggctatt ttcacagggt tttattttta ctgcccccag ggcaaagcca
    22861 aaacttttat caccatcaag ataccaccgg gtactcatat cagcacgagc acctaattta
    22921 taaacataat atgccccgcc ttcaacgcca ataatattgg aataataacc actattgaaa
    22981 tcgaacaatc ctctctgtac ccatgcgtaa atatctcttc ccgcgccagc actgggctta
    23041 tccgccctgc gcaattcgtt tttcagtctg atgcgtagtc ccgcttcatc gtcagccagt
    23101 tgcgccgcat aagcagaggt aaggccagag gcagccgtca ggcaaataac ggccatggcc
    23161 actatttttc tcatagttgc acctttgatg ttctgattat ttttattgaa tattaattag
    23221 tgatatcgct gattaattgc tgctgcactt ttttacgatt atcaatttca accacgattt
    23281 ctttgaattt tttatccgtg agcggataaa accagataat aacgaatgcc agtagcataa
    23341 atccgcaagg tactaaggca attgatgtgc ggatgctcat aataacttcc ggcgtttgca
    23401 cctgattggc gatatatccg cttaatccca aaataaaggc aggaattgaa cctccgattg
    23461 cctgaccgca tttacgggta aatgagaata gtgaataggt gagcccttca attcgcacgc
    23521 cggtcaggta ttcaccgtat tctacggtat cagcttccag tgcccacatc acagtcatag
    23581 taacgccctg accaattgaa gcgatggcca acgcaaccaa cgccaccggc agtgaccaga
    23641 cggaaaccca gaagaatagc agataaccgc aggttcccag caaagcgcca atcaggaagg
    23701 tattcttttt accgctcctc gcgaccatcc ccggcaccag cggtgccgat gccacagtac
    23761 caaccaagtt ttgcaccagt accagcacag tgaacagccc ggtatcattt aacacatagc
    23821 gctcgtagaa caacgacgag gcgctgaccg caaaggtcga aatcagcaca cacagcgcac
    23881 cgatgcacaa cataaacagc gggcgattcc gtttcagggt ttgcagactg atcttcaatg
    23941 acggctgcgc aacgatacgt accacattct cacgcgtcga tttgaagcag atgaagtaaa
    24001 gcaccattcc ggcaatcgcc agcacaatcg tccagaaatg gtataccgac accatctctt
    24061 ccgggctgga gttcttaatg ctcggcccta tcagaaatgc caggcagaca aaggtcaatg
    24121 aagcggcaat cccacgagcc gcgcccagac gggcgcggga ttgtggttgt tgggtcatcg
    24181 cggtagcaag tgaaccataa ggaatattca ccaggctata gcaaagcccg aggcccatgt
    24241 aggtcaaata tgcatacact actttgctgc tatggctcca gtcggtcggt acccagaata
    24301 ccagcacgct gaagatcatt aacggcgcag taccgaagag taaaaacggg cggaattttc
    24361 cccagcgggt attcacactg tccaccactc gtccggcaaa gacgtcggcg aaggcatcga
    24421 atacccgcac caataacagc atggtgcccg ccgcagcggc accgacgcaa gcgacgtcgg
    24481 tgtagtaact caacaggaag agcgccccca ttgcgaaggc gaagttattg gcgacgtcac
    24541 cgaggctgta gccgacgatg gtgcgccagg agagttgttg attcattgtt tgcctccctg
    24601 ctgcggtttt tcaccgaagt tcatgccagt ccagcgtttt tgcagcagaa aagccgccga
    24661 cttcggtttg cggtcgcggg tgaagatccc cttcttgtta ccgccaacgc gcaatatgcc
    24721 ttgcgaggtc gcaaaatcgg cgaaattcca tacctgttca ccgacgccgg cactgacgcg
    24781 atcaaagacg cggtgataca tatccagcca tgcacactga tactcttcac tccacatgtc
    24841 ggtgtacatt gagtgcagcc cggctaacgt atccacgccg tattcggtga tgataatcgg
    24901 ctgatgcagt ttctcctgcc aggctagaag ttctttttcc agtaccttct ctgccgtttc
    24961 caaatcgccg ctttggacat accatccgta ataacggttc aggcacagca catcaaagag
    25021 atcgctgatg gtatcggtgt gagcgtcgca gaacattaca ttgacgcagg tgatcggacg
    25081 cgtcgggtcg agtttacgcg ttgcttccgc cagtggcgcg aaatattctc gtgcaccttg
    25141 cggacgggta tccggttcgt tggcaatact ccacatcacc acgcttgggt ggtttttgtc
    25201 acgcgctatc agctctttaa tcgcctgtaa atgcgcctgc tgagtttccc cgttgacagc
    25261 ctcttcgctg tacagttctt tcggcttgtt gcccgcttcg aaaccaatgc ctaaagagag
    25321 gttaaagccg acagctgcag tttcatcaat caccacgatg ccatgttcat ctgcccactc
    25381 gagcatctct tcagcgtaag ggtaatgcga ggttcggtag gagttggccc caatccagtc
    25441 cattaatgcg tgatcgtgca ccatcagcac gttatcgaat cctttgcctc gcaaatccgc
    25501 atcttcatga cgaccaaagc cagtaaagta gaacggtttg tggttgttcg tccttcactg
    25561 ccactgaccg gatgccgacg cgcagcgggt agatatcaca ctctgtctgg cttttggctg
    25621 tgacgcacag ttcatagaga taaccttcac ccggttgcca gaggtgggga ttcaccactt
    25681 gcaaagtccc gctggtacct tgtccagttg caaccacctg ctgatccgca tcacgcagtt
    25741 caacgctgac atcaccattt gctaccacct gccagtcaac agacgcgtgg ttacagtctt
    25801 gcgcaacatg cgtcaccacg gtgatatcgt ccacccaggt gttcggcgtg gtgtagacca
    25861 ttacgctgcg atggatcccg gcatagttaa agaaatcatg gaagtaagac tgctttttct
    25921 tgccgttttc atcggtaatc accattcccg gcgggatagt ctgccagttc agttcgttgt
    25981 tcacacaaac ggtgatacgt acacttttcc cggcaataac atacggcgtg acatcggctt
    26041 caaatggcgt atagccgccc tgatgctcca tcacttcctg attattgacc cacactttgc
    26101 cgtaatgagt gaccgcatcg aaacgcagca cgatacgctg gcccgcccaa cctttcggta
    26161 taaagacttc gcgctgatac cagacgttgc ccacataatt acgaatatct gcatcggcga
    26221 actgatcgtt aaaactgcct ggcacagcaa ttgcccggct ttcttgtaac gcgctttccc
    26281 accaacgctg atcaattcca cagttttcgc gatccagact gaatgcccac aggccgtcga
    26341 gttttttgat ttcacgggtt ggggtttcta caggacgtaa cataagggac tcctcattca
    26401 aataaaaata ctggtcaacc tttaatctga ttagttaacc aattctgtgt tgcacacagt
    26461 tatctgtgag aaacccatgg aagagaaatg gaaataaaaa gaactgacac cgcgatcaaa
    26521 aaaccaaaat ctgcaatacg cacagcgtga tatagatcgc attaatcttt aaaacagcgt
    26581 tgacagaagc cataaaataa gcaatcgaac gctcgttcga gcatcttgag aacgataaac
    26641 tctcatgaca tatggctacg gtgaatattt tgggggggaa ttctccgatc ccggctagat
    26701 tgtattttgt acagggaaat taaagtatga aacgcgggca cagttatcac cagcccgcga
    26761 aatgagagga tcaggatgcg gttaagatac cgccaatcat cgcgcgtaat ccctgagcaa
    26821 acgacgcttc acgcgccaga tcttccgctt cgatatcggc cagtacaccg taggtcagat
    26881 ccagcagtaa acgtgaagtc attgacgtgt tgatgtctgg gcttatctcg cctttttgct
    26941 gggcatcacg catccgctgg gcaacaaatt cagtgatcgt catatgctta tttttaagca
    27001 tggcggcgac ctgtgggtta cgcatccctt ccgccataat ttcgaccacc agcgcccgtt
    27061 gcccaaaggc ttcatgggtg agagagacaa tagactcgac catatagtca acaaaatgaa
    27121 tcccttcaat cggttcccgg aaacgggcca gcgccctctc ctggtcctgt aagataatcg
    27181 cctgaatcaa ggcttctttg gagatgaaat ggtgataaag cgtcccggga ctaatggcgc
    27241 aggatttaca gatggctttc atcgaggcac tgtgaaatcc attttctgaa aaaatctctc
    27301 tggcagcatt gaggatccgg gtccgtgtcg gttgtgcttc agtctgcatg ttatccatca
    27361 ttaaaccatt atagttagcg tgaataacta gtttaccgcg ttgtcaggtg agcgcctatc
    27421 attgctgttg aatagtgcga aggcacactc tattcgtatg cttttcatcc agctattggt
    27481 taaccaatag ccgtgatttg gctgccagtt gtttagcaga gacgttgatg aattgcacac
    27541 gctatcccgg taaacaacac atacggctgt ttaccggttc gttagtgtat taattgagct
    27601 cctgtacccc accaccggag acggtgagaa tttgtccgct tacccagctg gctgcaggcg
    27661 agcaaaggaa cagcgccgcg ttagcaatat cttgcggttg acccagacgt ctgatcggcg
    27721 tgtgctgtaa cattttttgt tcaatttctg gtgtaataac ggatttcagg gcatcggtta
    27781 atattgcccc cggcgcaatg ccattcaccc gaatattttt ttcacccagg tcaaatgcca
    27841 tatttctgac cagatgactg gccgcagctt tagatgatgc ataggaagtc atgtttatat
    27901 ttttattttc tgccgccata gaagtgatgg tcagaataac gccaccgcca tttttttcca
    27961 tttctggcgc aacaagttgt gacagatgga aaaaagaaaa cacattcagt tcataagcac
    28021 ggcgaaaatc cgccattggc atatcaaacg gtttaggtcc accgccaccg gcgttgttaa
    28081 ccagaatatc aactttaccc agcttactga tagcaaagtc tgccagtgca gagagttcct
    28141 gttcggaagt aatatcacaa cggcaggcaa atgcctgccc ccccagttgt tgaatttcgt
    28201 ctacaacatg gttagctgcg tcggcgttaa tatcactgac caccacagat gcgccagctg
    28261 tcgcgaatgt aatggcgatt tctttaccaa tacctgcacc cgcacctgtg atgatggcgc
    28321 attttccgtc gagtctcagg ttgtcagaat taaacacata aacctcctgt gaacttcagt
    28381 aaaaataaaa ggcaccgcct
//
LOCUS       DAJVUP010000035        28224 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.035, whole genome shotgun sequence.
ACCESSION   DAJVUP010000035 DAJVUP010000000
VERSION     DAJVUP010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28224
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.035"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..856)
                     /locus_tag="OQQ75_001427"
     CDS             complement(<1..856)
                     /locus_tag="OQQ75_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000239477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE9 sensor domain-containing protein"
                     /protein_id="HCS1975805.1"
                     /translation="MVKKPQQGTIFAAAQRSDSYFVKCINMLSLYEKIKIRLIILFLL
                     AALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKDIERSALTLKDSLYLLK
                     NTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVVYHQEQVNGPLVDES
                     GRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLRINGKDHDLLAVD
                     KIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYNSEGNYNIIDS
                     VDTEYIAKT"
     gene            complement(956..1867)
                     /gene="gsiD"
                     /locus_tag="OQQ75_001428"
     CDS             complement(956..1867)
                     /gene="gsiD"
                     /locus_tag="OQQ75_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiD"
                     /protein_id="HCS1975806.1"
                     /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA
                     LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ
                     ISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL
                     GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTILLRHILPGT
                     VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA
                     LAIFLTVLAFNLLGDGLRDALDPKIKG"
     gene            complement(1870..2790)
                     /gene="gsiC"
                     /locus_tag="OQQ75_001429"
     CDS             complement(1870..2790)
                     /gene="gsiC"
                     /locus_tag="OQQ75_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiC"
                     /protein_id="HCS1975807.1"
                     /translation="MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD
                     AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT
                     ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG
                     WLPTVGADSWQHYILSSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV
                     VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA
                     EILLFSLEFILINLVVDVLYAAINPAIRYK"
     gene            complement(2808..4346)
                     /gene="gsiB"
                     /locus_tag="OQQ75_001430"
     CDS             complement(2808..4346)
                     /gene="gsiB"
                     /locus_tag="OQQ75_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HCS1975808.1"
                     /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY
                     DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT
                     DFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILVH
                     PATAMISPAALEKYGKEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI
                     TWRPVADNNTRAAMLQTGEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVT
                     QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA
                     RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV
                     EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ
                     ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED
                     ADLQ"
     gene            complement(4366..6237)
                     /gene="gsiA"
                     /locus_tag="OQQ75_001431"
     CDS             complement(4366..6237)
                     /gene="gsiA"
                     /locus_tag="OQQ75_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter ATP-binding protein
                     GsiA"
                     /protein_id="HCS1975809.1"
                     /translation="MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGET
                     LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQSAAQMRHVR
                     GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQT
                     ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM
                     SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLG
                     AMKGLDYPRRFPLISLEHPAKQEPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVT
                     REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS
                     PGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLCVHGLLPGKDAAARVAWLLERV
                     GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD
                     LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAA
                     VPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR"
     gene            complement(6224..7189)
                     /gene="iaaA"
                     /locus_tag="OQQ75_001432"
     CDS             complement(6224..7189)
                     /gene="iaaA"
                     /locus_tag="OQQ75_001432"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1975810.1"
                     /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE
                     AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSH
                     LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPAIFSTPLRYEQLLAARKEG
                     ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC
                     YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG
                     LIAIGHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ"
     gene            7393..8628
                     /gene="moeA"
                     /locus_tag="OQQ75_001433"
     CDS             7393..8628
                     /gene="moeA"
                     /locus_tag="OQQ75_001433"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HCS1975811.1"
                     /translation="MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDV
                     VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA
                     PVPEGCEAVVMQEQTEQTDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE
                     LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC
                     EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL
                     AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVR
                     TASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN
                     VDVGEWVEVEPFNALFGGL"
     gene            8628..9377
                     /gene="moeB"
                     /locus_tag="OQQ75_001434"
     CDS             8628..9377
                     /gene="moeB"
                     /locus_tag="OQQ75_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HCS1975812.1"
                     /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGC
                     AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHNDATVGQPKVESARDALTRINPHIA
                     ITPVNALLDDAELAALIAEYDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ
                     ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAGYGKP
                     ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ"
     gene            complement(9453..10115)
                     /gene="fsa"
                     /locus_tag="OQQ75_001435"
     CDS             complement(9453..10115)
                     /gene="fsa"
                     /locus_tag="OQQ75_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS1975813.1"
                     /translation="MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLP
                     QLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE
                     GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA
                     KVLAASFKNPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWLGAFGRT
                     SI"
     gene            10246..11145
                     /locus_tag="OQQ75_001436"
     CDS             10246..11145
                     /locus_tag="OQQ75_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415345.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HCS1975814.1"
                     /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDL
                     LYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGE
                     VKSVEEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPEIATALLQACHEAGIHTAVETC
                     LHVPWKYITPSLPYIDLFLADLKHIADAPFKQWTDGNAAKVLDNLKKLAAAGKKIIIR
                     VPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLSYDAPEKPLD
                     APDLLDFAQQYACQKGLTATLRG"
     gene            11151..13583
                     /locus_tag="OQQ75_001437"
     CDS             11151..13583
                     /locus_tag="OQQ75_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HCS1975815.1"
                     /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL
                     DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL
                     ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT
                     SGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSE
                     HIERFAALAREMAATETRESRRDELLAIAENCDLIAHQPPQTFWQALQLCYFIQLILQ
                     IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH
                     SKASAGSPLYQNVTIGGQTLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM
                     SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW
                     GYRCTGMSFINFARVMLAALEGGRDATSGNVFLPQEKALSAGNFNNFDEVMDAWDTQI
                     RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI
                     ANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT
                     VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK
                     AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK
                     LMILLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDA
                     QDDIIARTEHML"
     gene            13729..14544
                     /gene="ybiV"
                     /locus_tag="OQQ75_001438"
     CDS             13729..14544
                     /gene="ybiV"
                     /locus_tag="OQQ75_001438"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase YbiV"
                     /protein_id="HCS1975816.1"
                     /translation="MSVKVIVTDMDGTFLNDAKMYNQPRFMAQYQELKKRGIEFVVAS
                     GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL
                     NFVACGLQSAYVSENAPEAFVALMAKHYHRLKAVKDYQEIDDVLFKFSLNLPDEQIPL
                     VIDKLHIAFDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN
                     DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS"
     gene            14696..15961
                     /locus_tag="OQQ75_001439"
     CDS             14696..15961
                     /locus_tag="OQQ75_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1479 domain-containing protein"
                     /protein_id="HCS1975817.1"
                     /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA
                     TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW
                     DQSMLDYLDRNRFDEVYKGPGDNFFGTLSTSRPEIYPIYWSQTQMQARQSEEMANAQS
                     FLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ
                     RVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL
                     HVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG
                     DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFP
                     HEDYETNWEGRFTLADLNIHGKRALGMDV"
     gene            complement(16202..17794)
                     /locus_tag="OQQ75_001440"
     CDS             complement(16202..17794)
                     /locus_tag="OQQ75_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HCS1975818.1"
                     /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM
                     KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI
                     YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW
                     KLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV
                     CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA
                     SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL
                     FKNLNLLLEVGEKLAVLGTNGVGKSTLMKTLVGDLQPDSGTVKWSENARIGYYAQDHE
                     YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG
                     KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI
                     TPERVIDFSGNYEDYLRSKGIE"
     gene            18013..18933
                     /gene="ldtB"
                     /locus_tag="OQQ75_001441"
     CDS             18013..18933
                     /gene="ldtB"
                     /locus_tag="OQQ75_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1975819.1"
                     /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT
                     IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV
                     INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
                     YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI
                     KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS
                     VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN"
     gene            complement(18992..20110)
                     /locus_tag="OQQ75_001442"
     CDS             complement(18992..20110)
                     /locus_tag="OQQ75_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HCS1975820.1"
                     /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT
                     IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL
                     FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
                     AQMAPLAGAMMLTLLLLCWCCFPGKVLQYHTGVQTPEWKPRLVWSCLGLYIVFLTALE
                     FKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS
                     HLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGGFGLLPGSLASLIA
                     LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN"
     gene            complement(20107..20574)
                     /gene="mntR"
                     /locus_tag="OQQ75_001443"
     CDS             complement(20107..20574)
                     /gene="mntR"
                     /locus_tag="OQQ75_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-binding transcriptional regulator
                     MntR"
                     /protein_id="HCS1975821.1"
                     /translation="MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL
                     ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA
                     QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGTK"
     gene            20760..20888
                     /gene="mntS"
                     /locus_tag="OQQ75_001444"
     CDS             20760..20888
                     /gene="mntS"
                     /locus_tag="OQQ75_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganase accumulation protein MntS"
                     /protein_id="HCS1975822.1"
                     /translation="MNEFKRCMRVFSHSPFKVRLILLSMLCDMVNNKPQQDKPSDK"
     gene            21160..22743
                     /gene="opgE"
                     /locus_tag="OQQ75_001445"
     CDS             21160..22743
                     /gene="opgE"
                     /locus_tag="OQQ75_001445"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS1975823.1"
                     /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA
                     AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST
                     EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN
                     LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT
                     YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD
                     GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK
                     NTKDEALLDMTAQVLAQEHSQPQLIVLHLIGSHPQACDRTQGKYETFVQSKETSCYLY
                     TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP
                     FMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF
                     QLQKVDYNHLGTDIFDPKP"
     gene            complement(22792..23307)
                     /gene="ompX"
                     /locus_tag="OQQ75_001446"
     CDS             complement(22792..23307)
                     /gene="ompX"
                     /locus_tag="OQQ75_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpX"
                     /protein_id="HCS1975824.1"
                     /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM
                     GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI
                     YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV
                     GTWIAGVGYRF"
     gene            complement(23360..23425)
                     /locus_tag="OQQ75_001447"
     CDS             complement(23360..23425)
                     /locus_tag="OQQ75_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975825.1"
                     /translation="METFCYMKWPVRHHKSRRVSH"
     gene            23660..24547
                     /gene="rhtA"
                     /locus_tag="OQQ75_001448"
     CDS             23660..24547
                     /gene="rhtA"
                     /locus_tag="OQQ75_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HCS1975826.1"
                     /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVT
                     ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA
                     LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
                     AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILS
                     TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS
                     MGSTLTVRKESKIKELDIN"
     gene            24846..25349
                     /gene="dps"
                     /locus_tag="OQQ75_001449"
                     /gene_synonym="pexB"
     CDS             24846..25349
                     /gene="dps"
                     /locus_tag="OQQ75_001449"
                     /gene_synonym="pexB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001730644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein Dps"
                     /protein_id="HCS1975827.1"
                     /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS
                     LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT
                     PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW
                     FIESNIE"
     gene            25753..26499
                     /gene="glnH"
                     /locus_tag="OQQ75_001450"
     CDS             25753..26499
                     /gene="glnH"
                     /locus_tag="OQQ75_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter substrate-binding
                     protein GlnH"
                     /protein_id="HCS1975828.1"
                     /translation="MKSVLKVSLAALTLVFAVSSHAADKKLVVATDTAFVPFEFKQGD
                     KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID
                     FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN
                     IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL
                     RDKVNGALKTLRENGTYNEIYKKWFGTEPK"
     gene            26638..27297
                     /gene="glnP"
                     /locus_tag="OQQ75_001451"
     CDS             26638..27297
                     /gene="glnP"
                     /locus_tag="OQQ75_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HCS1975829.1"
                     /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR
                     TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG
                     AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIK
                     DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI
                     L"
     gene            27294..28016
                     /gene="glnQ"
                     /locus_tag="OQQ75_001452"
     CDS             27294..28016
                     /gene="glnQ"
                     /locus_tag="OQQ75_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HCS1975830.1"
                     /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL
                     RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP
                     LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF
                     DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG
                     NPQVLIKNPPSQRLQEFLQHVS"
BASE COUNT         6978 a         7539 c         6973 g         6734 t
ORIGIN      
        1 atgtctttgc aatatactcc gtatcgacag aatcaataat attataatta ccttcgctat
       61 tataaataat cagtttttca cgagcgagtt gattcttggc aatgatctca tgaccttgtt
      121 tcaaaaatag aacttcatca ttagcgctga tttgatcaag atactcgttc aaataccgcc
      181 agtttaaatc gacatgaatt ttatctaccg ctaacaaatc gtgatctttg ccgttgatac
      241 gtagcgtaaa agagatacat tttttacccg gacgatcaaa gcaattgtat gccggattcc
      301 agctgttgtt agagtcatct gaagccaccg accacggtcg tttcgatggg ttaaaatcgg
      361 caaaaataac ccgccctgac tcgtcgacaa gcggtccatt tacttgttcc tgatgataaa
      421 caacgatttt atcattcgcc ctccgtgaaa agagataata tttattatca tcaagtacca
      481 gtcccaccga gtctaaaaat ggcatcattt ccattttcag aatcacggcg cgttgaatct
      541 cctctgtatt ttttaataaa tacagtgagt cctttaatgt cagggccgaa cgttcaatat
      601 ctttaaagaa atagccaacg tttttctgaa taagttcaaa gcggctatcg gcacgtttta
      661 ccgcgcgttc cgataccagt tgatagttaa tgatgaaaaa aagaccaata aatgacagtg
      721 ctgccaataa aaataaaatt atcagcctta tctttatctt ttcgtataaa ctcagcatgt
      781 taatacattt aacaaaataa ctatctgaac gctgtgccgc tgcaaaaata gtcccttgct
      841 gcggcttttt aaccaaatta cccgattcta caaaatcagc agaaagttac aacacttgct
      901 tagggcaata atttcctgtg aggtgattac cctttcaagc aatattcaaa cgtaactatc
      961 ctttaatttt cggatccagc gcatcgcgta aaccatcgcc caacaaattg aacgccagta
     1021 cggtcagaaa aatagccagg gccggaaaaa cagcgacatg cggcgcgata accatatccg
     1081 ctcgtgcctc attgagcatt gctccccact ctggtgtcgg cggctgcgca ccgaggccga
     1141 gaaatgacag gctggcggca gagataatcg aggtgccaat gcgcatggtg aaaaacacca
     1201 cgatagacga gacggtccca ggcaagatat gacgcaataa aatggtcata tcgctggcac
     1261 caatactgcg tgctgactca ataaaggttt gctgtttcaa caccagcgtg ttgccgcgca
     1321 ccagtcgggc aaacgcgggg atggaaaaaa tggcgactgc gataatcacg ttagcaatgc
     1381 cgcttcccaa caccgcaaca acagcgatcg ccagtaaaat acccgggaag gcaaacagca
     1441 catcgcaaat gcgcatgatc agccgatccc accagccttc ataatatcca gccaacaagc
     1501 ccagcaacgt cccgatcgcc gcaccgataa acacggcaaa cacgcccgcc gccagcgaga
     1561 tttgcgcacc aaccaggaca cggctgaaaa tgtcgcgccc cagtgaatcg acgccaaacc
     1621 agtgctgcaa agaaggtccg ttattcagat tgtcataatc aaaataattt tcggcgtcat
     1681 agggagcgat ccagcgtgca aaaatggcca ccacaatcaa taaaataacg aataatgcgg
     1741 cggtcatcgc catatgctga cggcgaaatc gtcgccagaa ttcatgccac ggtgtacgca
     1801 cctggtcagg tttgaccagt ggcatggcgt ttaacaccgc ctgacgtcgc cagttaaata
     1861 gtcgcatcct tacttgtacc tgatagccgg gttaatggcg gcgtaaagca catccaccac
     1921 taagttgata agaataaatt ccagcgagaa aagcagaatt tccgcctgaa tcaccgggta
     1981 atcgcgcatt tctacggagt caacgagtaa gcgtccaagt ccgggccagt tgaaaacttt
     2041 ctccaccacg atagaaccac cgagcaaaaa gccaaactgt aagcccatca tggtcactac
     2101 cgggatcatc gcgttacgta gcccgtgttt gaggacaacc caggtttcgc tcaccccttt
     2161 cgccctcgcg gtacgcatat aatcttcgct taaaacatcg acaaacgacg cgcgggtaaa
     2221 gcgcgccatc acggctgcca ctgccgcgcc gagcgtcagg gaggataaaa tgtagtgctg
     2281 ccaactgtct gctcccacgg taggcagcca gcccagttca acggagaata cctgaattaa
     2341 aagcatcccc agcgcaaatg ccggaaacga gatccccgac accgcaatgg tcatactcaa
     2401 tcgatccggc caacgattac gccagacggc ggcgataatt cccgccgcca taccaaatat
     2461 caccgcccag accatactgg ttatggtcag ccacagcgtt ggcataaagc ggctggcaat
     2521 ctcatcggca accggacgac gcgacaccat cgacaggcca aaatccccct gcacagcatt
     2581 gctgatatag tgccagaact ggtgatacag cggctgatcc aaccccagct gctgacgcac
     2641 cagttctata acctgcgcat cagcttcggg cccggcaatc aatcgcgccg gatcgccggg
     2701 cagcatatgc acaaataaaa acaccagcac cgagacgata aacagcgtcg gaatcaaccc
     2761 cagtaagcgt ttgataacgt aattaagcat tccactccct gcgttgctta ttgcaaatcc
     2821 gcgtcttcaa agctgaagcc ggtgtctggc atgatccaaa aaccggtcag gtttttactg
     2881 tgtgccgaca ccagtttttc taccaccagc gggatccacg gcgactcttg ccagatgata
     2941 tcctgcgccg ccttatacaa gcgggtcttt tccgccggat cattagtttt cagtgcctga
     3001 gccaggaagt cgtccacctg tttattgctg taaaatgcgg tattaaacag cgtcggtggc
     3061 cagttttgcg aggcgaacag tggcgatagc gcccagtccg cttcgccggt tgaagccgac
     3121 cagccagtgt agaacatccg cacgccgctc tctttttgcc ctttaccttc aacttctgcc
     3181 gcccgctgtc cggcatccat cgcggtcacc tgggctttaa tcccgacctg cgctaactgc
     3241 tgctgggtaa attgcagcac tttctgcgcg gtgctgtggt tatgtgacga ccacagcgtg
     3301 gtactgaaac cgttgggata tcccgcctct ttcagtaatt cgcgcgcttt cactggatcg
     3361 taaggccacg gtttataact ttgcgcgtag gcgatacttg gcggtaccac accagtagct
     3421 ggcgttgcat agcccgcaaa ggcaactttc accagcgccg gacggttaat ggcgtaattc
     3481 agcgcctcac ggaccttcgg gttatcgaac ggcttttgcg tcacgttcat actgatataa
     3541 cgctgcataa ttgacggact ggccatcaac tcgatatttt tgtttttctc cagcagtgcg
     3601 gcctgctcgt agggaatggg gaaagcaaac tgcgcttcac cggtttgcag cattgccgcg
     3661 cgggtgttgt tatccgccac cggacgccag gttatgctgt ccagtttggg caatcctggc
     3721 tgccagtaac ccgcgaattt tttcaccttc acaaaatcgg tctgattcca ggtatccagt
     3781 tcatacggtc cggttcccac cggatgaaaa ccaatctcct tgccatattt ttccagcgct
     3841 gccggtgaaa tcatcgcggt cgccggatgg acaagaatat taataaacgc tgagaacggc
     3901 tgtttgaggg taatctttac cgttgtcgga tcgatcgcct ccgttttggc aatattctta
     3961 tacaggttat agcgtttaag atgattcgcc ggatcgctgg cccggtccag attcgctttc
     4021 accgccgcgg cgttgaaatc ggtgccatcc tggaatttaa ttccttcccg caatttcacg
     4081 gtgtaagtaa tgccgtcatc ggaaacggta taactctccg ccagcacgtt tttcagtttc
     4141 atctctttat ccagaccgaa cagcccctgg taaaacgatt tcgctacggc ctgagataac
     4201 gtgtcattcg cgtcatacgg atcgagcgtg gtgaaattcg atcctaccgc caccaccaca
     4261 tctttggcag cgaatgcaca agatgccatc aacgctgtcg caatgcccag cgccactaac
     4321 ccactacggt gtacagctct tgccatttta ttctccgcct gaatgttatc tacgcatgaa
     4381 tgcgtattct gattgtggtt gtgcgacgta atgccccggc ccgacgcatt gcaacgagac
     4441 ggctgccacc tcttcgccac gcagatgaat attgctggga agatcgtccg acagcagtac
     4501 acgctgcggt cgttgtcggg acggttcagc gaccggaact gccgccagta atttacgcgt
     4561 ataaggatgc tgcgggtttt cgaagaccgc gcgccgtgga ccaatttcaa caatttgccc
     4621 gagatacatc accgccacac gatgactaat ccgctctacc acggccatat cgtgggagat
     4681 aaacagatac gcaatgccga aatcacgctg gagatcgagc aacaagttga taatctgccc
     4741 gcgaatagaa acatccagcg ccgaaacggc ttcgtcggca atgatcactt ttggattcaa
     4801 tgccaacgcg cgagcaatgc agatgcgctg gcgctgaccg ccggaaaact catgcgggta
     4861 acgccaggca tgttcaggta acaggcccac gcgctccagc aaccacgcaa cgcgtgcagc
     4921 cgcgtcttta cctggcaata aaccgtgtac acacagcggt tcgataatcg aatcaccgat
     4981 ggtctgacgt gggtccagcg aagcgtaagg gtcctgaaaa ataaactgaa tatcccggcg
     5041 caatgcctga agtttgccag gtgacaaggt atcgattcgc tgaccgttaa agataatttc
     5101 gccgccctgc gattcgacca ggcgcagcaa cgcccgcccg gtagtggatt taccgctgcc
     5161 agactcgccc accagcgata gcgtttcgcc aggccagaga tcaaaactga ctttctcaac
     5221 ggcatgcact tcccgcgtta cgcgattcaa caaaccgctg cgcaaaggga aacgggtgac
     5281 aagattacgc actcgtaaaa caggttcgcc atccaccacc gttttctgct cgatgggggg
     5341 ttcctgtttc gctggatgtt caagcgatat caatgggaaa cgtcggggat aatctaaccc
     5401 tttcatcgca ccaagttgcg gaacagcagc taacagcgca cgggtgtaag gatgttgcgg
     5461 tgcatgaaaa atctgttcga cggtacccgt ttccaccgcc tcgccctgat acatcaccag
     5521 tacccgatcg gctatctctg ccaccacgcc catatcgtgc gtgataaaga taacgcccat
     5581 cgacatctct ttttgcaata ctttgattaa ttgcaggatc tgcgcctgaa tagtgacatc
     5641 cagcgcggtg gttggctcat cggcaatcag caccgccggg cggcatgaca gcgccatcgc
     5701 aatcatcact cgctggcgca tcccgccaga gagttgatgc ggataacgtg aaagaatggt
     5761 ttgtgcctca ggaatgcgta cctgatccag catccgcttc gcctcgacca tcgcttcttc
     5821 acgactggcg ttctgatgca gacgaattga ttcggcaatc tgttcaccca cagtaaatac
     5881 cgggttcagc gatgtcatcg gctcctgaaa tatcatcgcc atatccgcac cgcgaacatg
     5941 gcgcatttgt gcagcgctct gctcgctaag ttcaatcact tcgcgactgc gccgctgcaa
     6001 cagcatttta tcgcactgta ctaaaccgcc cgcctgttcc aacaggcgca tcaatgccaa
     6061 cgcagtcact gacttaccgg agccggattc gccaacaatt gccagcgtct caccgcgttg
     6121 cagactaaaa gagagattgc ggaccgcagc tattttctgc tggtcctgca taaaggcaat
     6181 attcagattt tcaaccgcca gcacattacc ggcatcaagt tcatcactgt gtggcaacgg
     6241 tgtccccttt ttcacggtag ataccggtgg ttggcgtatc gcctgcgtag ccccaggcgc
     6301 gatacattcc ttcggtgtta aacggtagcg cgacattccc ttcatggccg atagcgatta
     6361 agccaccgct accgccaagc gcagggagtt tttccattac tacccgctcg caggcttccg
     6421 cgagacttaa tccgccgtaa tccattaacg cggcgatgtc atatgccgcc agcgcgcgga
     6481 tgaagacttc gcccgtgccg gtacaagaaa ccgccacact ggcgttattg gcgtagcatc
     6541 cggcacccac taagggacta tcgccaactc gtccgggtaa tttattggtc attccgcctg
     6601 tggacgtggc tgccgccaaa ttgccgtcta aatccaacgc cacggccccc acggtgccca
     6661 ttttctgttt ttcatccagt ggcgcaccgc tatggtcgag gacggttgcc ccttccttgc
     6721 gcgctgccag tagttgttca taacgcaaag gcgtggagaa aatcgccggc gagacgcgct
     6781 ccatgccacg agcaaacgca aaattttctg ccccttcgcc aatcatcatc acatgcgggc
     6841 tttgctccat caccagccgg gcggcaagaa ccggattacg cagatgacta acgcccgcca
     6901 ccgcaccggc tttcagggtg ttaccatcca tcacacaggc gtccagttca tgggtttcat
     6961 cacgcgtaaa gacagcgcca attccggcgt taaacagtgg acactcttcc agcagacgca
     7021 ccgcttccgt caccacatcc agcgcacttt cgcccgcttc cagcattttc tgcccggttt
     7081 caacaatggc agacaacgcc tcaatgtagc gtaattcctg ttgcagactc atctgcgcgc
     7141 ggctaattgc acctgcgcca ccatgaattg caatgactgc tttgcccata gtattcgtcc
     7201 attaagggtg gctcgccact tttgctataa atatcagaat ttttatgaat tactcattca
     7261 atttttgaat atagaaagat ggatatggca tgtaaaggca ggagccaacg ctacgcccga
     7321 ggtggcatac agtctgtggc gtttttctga cataataggc aaattcgatt ttgcctccgc
     7381 aggagtgttt tcatggaatt taccaccgga ttgatgtcgc tcgacaccgc gcttaatgag
     7441 atgctttctc gcgtcacccc actgaccgcc caggaaacgc tgccactggt acagtgtttt
     7501 ggtcgtattc tggcgagcga tgtcgtttcg ccgcttgatg ttccggggtt tgataactcc
     7561 gcaatggacg gctacgcggt gcgtttagcc gatattgcct ccgggcaacc gctgcccgtt
     7621 gccggtaaat cctttgccgg tcagccgtat catggtgaat ggcctgcggg cacctgcatt
     7681 cgtattatga ccggtgcgcc ggtgccggaa ggctgcgaag cggtggtgat gcaggagcag
     7741 actgaacaaa cggacaatgg cgtgcgtttt actgctgaag tgcgtagcgg gcaaaatatt
     7801 cgccgtcgcg gtgaagatat ctctgcaggt gcggttgttt tcccggcggg aactcgcctg
     7861 actaccgcag agctgccagt aattgcttca ctggggattg ccgaagttcc ggtgattcgt
     7921 aaagtgcgtg tagcgctttt ttctaccggt gatgaactcc agttgcccgg tcagccgctg
     7981 ggtgacggcc aaatctacga caccaaccgt ctcgccgtac acctgatgtt agaacagctg
     8041 ggttgcgagg taatcaactt agggattatc cgcgacgatc cccatgccct gcgcgccgca
     8101 tttattgaag ccgacagcca ggcggatgta gtgatcagtt ccggcggtgt ttcagtgggt
     8161 gaagcggatt acaccaaaac gattcttgaa gagctggggg agatcgcctt ctggaagctg
     8221 gcgattaaac caggtaaacc gttcgcgttc ggtaaactca gcaatagctg gttctgcggc
     8281 ctgccgggca acccggtttc agcgacgctg accttctatc aactggtaca gcctttgctg
     8341 gcaaaactaa gcggcaacac cgccagcggc ctgcccgcgc gccagcgcgt acgcacagcg
     8401 tcccgcctga aaaaaacgcc aggacgtctt gatttccagc gcggcgtgct gcaacgcaac
     8461 gccgacggtg aacttgaagt gacgaccacc ggacatcagg gttcacatat atttagctcc
     8521 tttagtctcg gcaactgctt tatcgtgctg gaacgcgatc gcggcaatgt ggacgtgggc
     8581 gaatgggtgg aagtagaacc gtttaacgcg ttgttcggag gcctgtaatg gcggaactca
     8641 gcgatcagga gatgctgcgc tacaaccggc aaatcattct gcgcggtttt gattttgacg
     8701 gtcaggaggc gctaaaagat tctcgtgtgc tgatcgtcgg cctcggtgga ctcggctgcg
     8761 cagcttcgca gtatctggca agcgccggtg tcggcaacct gacgctgctc gacttcgaca
     8821 cggtttcgct ctcgaatctg caacgccaga cactgcacaa tgatgccacg gtcgggcaac
     8881 cgaaggtgga atccgcccgt gacgccctga cgcggatcaa cccacatatc gcgattacgc
     8941 cagtcaatgc actgctagat gacgcagaac ttgcagcatt gattgctgaa tacgatctgg
     9001 tgctcgactg tacggataac gttgcggtac gtaatcaact gaacgcaggc tgttttgccg
     9061 cgaaggtgcc gctggtttcc ggcgcggcaa ttcgtatgga agggcaaatc acggtcttca
     9121 cttatcagga cggcgaaccg tgctatcgct gccttagccg tttgtttggc gagaacgcgt
     9181 taacctgcgt agaagcaggc gtgatggcac cgttgatcgg cgtaattggt tcgttgcagg
     9241 caatggaagc gatcaaactg ctggcaggtt atggcaaacc ggccagcggg aaaatcgtca
     9301 tgtacgatgc gatgacctgt cagtttcgcg aaatgaaact gatgcgtaat ccggggtgtg
     9361 aggtgtgcgg gcagtaattg ccacctccag gccagataag acgcggcact ccgccacgtc
     9421 atcagcaatt tatgaggatg cagaacgtcc ggttaaatcg acgttctgcc aaacgctccc
     9481 agccagtcct gttcaaactt cgccacagcg gcatcaaccg ccggatagct aatcatctgt
     9541 tgtgccacat ccagtggcag cgtaattgat tcacatcctg ccagtaagca gtccagcgcc
     9601 tgacgcgggt ttttgaaact cgctgccagc actttcgcct gcggcgcatg cattttcaat
     9661 aactggtgta agtcggtcac agtctgaatg ccgctaccgc cctgagcatc aatacgatta
     9721 acgtaaggcg caacatattc cgcacctgcc agcgccgaca gcagcccttg tgctgcgcca
     9781 tataccgcgg ttcccagcgt tggaatccct tccgctttta acatcttaat agctgccagc
     9841 ccctcggcgg tcaccggaac tttcaccacg atatccgcaa taatagaacg caatttacgt
     9901 gcgtcattca ccatcccttc agcagtggta gccattacct gggcaaacag acgcccctga
     9961 ccgcccatcg cttcatgaag ttgcggaagc acaacatcca gcggtttttt acccgcggcg
    10021 ataatgcttg ggttagtggt cacacccgcc agcggaaaaa tacgtgacag cgccttcact
    10081 gcaacaacgt ctgaagtatc cagatacagt tccataacca tcctcaaaat gtactttttg
    10141 tctgaatgta gactatcacg ggaaaactct ctgaacagtt gacgcacatc aatccaactt
    10201 tcattcgaaa gtattttaat gtttgaacga aacagagagg caactatgat tttcaatatt
    10261 cagcgctact cgacccatga tggccccggt atccgcacgg tcgtatttct taaaggctgt
    10321 tcgctgggct gccgctggtg tcagaacccg gaaagccgcg cccgcacgca ggatctgctg
    10381 tatgacgcac gactgtgtct ggaaggctgc gagctgtgcg ctaaggcagc gccggaagtg
    10441 attgagcgcg cattgaatgg tttgcttatt catcgggaaa agttaacccc ggagcatctg
    10501 acggcgctaa ccgactgctg cccgacacag gcgttaaccg tgtgtgggga agtgaaaagc
    10561 gttgaggaga tcatggcgac cgttctgcgc gataaaccgt tttacgatcg cagcggcggc
    10621 ggcttaacgc tttcgggtgg tgaacccttt atgcagccgg aaatagcgac ggcgctactg
    10681 caagcctgcc acgaggcagg cattcatact gcggtagaaa cctgtctgca tgtgccgtgg
    10741 aaatatatca ccccttctct gccctatatc gatctgtttc ttgccgattt aaaacacatt
    10801 gccgacgcgc cgtttaaaca gtggaccgac ggtaacgccg ccaaggtgct ggataacctg
    10861 aaaaaactcg ccgcagcggg caaaaaaatc attatccgcg tgccgctgat tcagggcttt
    10921 aatgccgacg aaacctctgt aaaagccatt accgattttg ccgccgacga gctgcacgtt
    10981 ggcgaaattc attttctgcc ctaccacacg ctgggcatca acaaatatca cttacttaat
    11041 ctgtcctatg acgccccgga aaaaccgctt gatgcgccag acctgctcga ctttgcccag
    11101 cagtatgcct gccagaaagg gttaaccgcg accttacgag gataacaacc atgaccacac
    11161 tgaaactgga cacgctcagc gaccgcatta aagcgcacaa aaatgcgctg gtgcatattg
    11221 tgaaaccgcc ggtctgtacc gagcgcgcgc agcactatac cgagatgtat caacaacatc
    11281 tcgataagcc gatcccggta cgtcgcgcgc tggctctggc gcatcacctg gcgaatcgca
    11341 ccatctggat caagcacgat gagttgatca tcggcaacca ggcaagcgag gttcgcgctg
    11401 cgccgatctt cccggaatat accgtctcgt ggatcgaaaa agagattgat gatctggcag
    11461 atcgtcccgg tgctggtttt gcggtgagcg aagagaacaa acgcgttctg catgaagtgt
    11521 gcccgtggtg gcgcggtcag acggtacagg atcgctgcta cggcatgttt accgatgagc
    11581 aaaaaggtct gctggcgacc ggaatcatta aagcggaagg caatatgacc tccggcgatg
    11641 cgcacctggc ggtgaatttc ccgctgctgc tggaaaaagg tcttgatggt ctgcgcgaga
    11701 aagtagcgga acgtcgctcg cgcatcaatc tgacggtact ggaagatttg cacggcgaac
    11761 agttcctgaa agcgattgat atcgtgctgg tggcagtcag cgaacacatt gaacgttttg
    11821 cagccctggc gcgtgaaatg gccgcgaccg aaacccgcga aagccgtcgc gatgaactgc
    11881 tggcgatagc agaaaactgc gatcttatcg cccaccagcc gccgcagact ttctggcagg
    11941 cgctgcaact gtgttacttc atccagttga tattgcagat cgaatctaac ggtcactcgg
    12001 tatcgtttgg tcgtatggac cagtatctct acccgtacta tcgccgagac gttgaactca
    12061 accagacact ggatcgcgaa cacgccatcg aattgctgca tagctgctgg ctgaaactgc
    12121 tggaagtgaa caagatccgc tccggctcac actcaaaagc ctctgcggga agtcctctgt
    12181 atcagaacgt caccattggc ggacaaactc tggttgatgg tcaaccaatg gacgcggtga
    12241 atccactctc ttacgcgatc ctcgaatcct gcggtcgcct gcgttccact cagcctaacc
    12301 tcagcgtgcg ttaccatgca ggaatgagta atgatttcct cgacgcctgc gtacaggtga
    12361 tccgttgcgg cttcgggatg ccggcgttca acaacgacga aatcgtgatc ccggaattta
    12421 ttaaactcgg tattgaaccg caggacgctt acgactacgc agcgattggt tgtatcgaaa
    12481 ccgccgtcgg tggcaaatgg ggctatcgct gtaccggcat gagctttatc aacttcgccc
    12541 gcgtgatgct ggcggcgctg gaaggcgggc gtgatgccac aagcggcaac gtgttcctgc
    12601 cacaagaaaa agcgttgtcg gcaggcaact ttaacaattt cgatgaagta atggacgcgt
    12661 gggatacgca aatccgttat tacacgcgta aatcaatcga aatcgaatat gtcgtcgaca
    12721 ccatgctgga agagaacgtg cacgatattc tctgctcggc gctggtggat gactgtattg
    12781 agcgagcgaa aagtatcaag caaggcggcg cgaaatatga ctgggtttct ggcctgcagg
    12841 ttggcattgc caacctcggc aacagcctgg cggcagtgaa gaaactggta tttgaacagg
    12901 gcgcgattgg tcagcaacag ctggctgccg cactggcgga tgacttcgat ggcctgactc
    12961 atgagcaact gcgtcagcgg ctgattaacg gtgcgccgaa gtacggcaac gacgatgata
    13021 ctgtcgatac gctgctggct cgcgcttatc agacctatat cgacgaactg aaacagtacc
    13081 ataatccgcg ctacggtcgt ggtccggttg gcggcaacta ttacgcgggt acgtcatcta
    13141 tctccgctaa cgtaccgttt ggtgcgcaaa ctatggcaac gccggacggg cgtaaagccc
    13201 acaccccgct ggcagaaggc gccagtccgg cctctggtac tgaccatctc ggccctactg
    13261 cggtcattgg ctcggtgggt aaactgccta cggcagcgat tctcggcggc gtgttgctca
    13321 accagaaact gaatccggca acgctggaga acgaatctga caagcagaag ctgatgatcc
    13381 tgctgcgcac cttcttcgag gtgcataaag gctggcatat tcagtacaac atcgtttccc
    13441 gcgaaacgct gctggaggcg aaaaaacatc cggatcagta ccgcgatctg gtagtgcgtg
    13501 tcgcgggtta ttccgccttc ttcaccgcgc tctctccaga cgctcaggac gatatcatcg
    13561 ctcgtactga acatatgctg taatctcttc ggcccggctg cggcgtcgcc gggctaaatc
    13621 attcacatca tcaatttcat ccttactttc attcgaaata taatttgtgc tctgcgtcac
    13681 attgttatta cactgttacg gtttcatttt cgagccagga gcacacctat gagcgtaaaa
    13741 gttatcgtca cagacatgga cggtactttt cttaacgacg ccaaaatgta caaccaacca
    13801 cgttttatgg cgcaatatca ggaactgaaa aagcgcggca ttgagttcgt tgtcgccagc
    13861 ggtaatcagt attaccagct tatttcgttc tttcctgagc taaaggatga gatctctttt
    13921 gtcgcggaaa acggcgcact ggtttacgaa catggcaagc aactgttcca cggcgaactg
    13981 acccgacatg aatcgcggat tgttattggc gagttgctaa aagataagca actcaatttt
    14041 gtcgcctgcg gtctgcaaag tgcatatgtc agcgaaaatg cccccgaagc atttgtcgca
    14101 ctgatggcaa aacactacca tcgcctgaaa gctgtaaaag attatcagga gattgacgac
    14161 gtactgttca agttttcgct caacctgcca gatgaacaaa tcccgttagt gatcgacaaa
    14221 ctgcacatag cgttcgatgg cattatgaaa cccgtcacca gtggttttgg ctttatcgac
    14281 ctgattattc ccggtctaca taaagcaaac ggtatttcgc ggttactgaa acgctgggat
    14341 ctgtcaccgc aaaatgtggt agcgattggc gacagcggta acgatgcgga gatgctgaaa
    14401 atggcgcgtt attcctttgc gatgggcaat gctgcggaaa acattaaaca aatcgcccgt
    14461 tacgctaccg atgataataa tcatgaaggc gcgctgaatg tgattcaggc ggtgctggat
    14521 aacacatccc cttttaacag ctgacctctc taccggagcc gtgcgctccg gttttccctt
    14581 ctttttacat cctgtacatc acatcaaatc attaagcttg cattaactta tttataactt
    14641 atattgtcac atgcaaatca taatggtttc gaatgaaagt taatgagagg tggttatggc
    14701 ttctactttt accagcgaca cattgccagc cgatcacaaa gcagctatcc gtcagatgaa
    14761 gcacgcgctg cgggcgcagc ttggcgacgt ccagcagatc tttaatcagc taagcgatga
    14821 cattgccacg cgagtggctg aaatcaacgc actcaaagca cagggcgatg ccgtctggcc
    14881 ggtgctgtct tatgccgata tcaaagcagg tcatgttact gcagagcagc gcgaacagat
    14941 taaacgtcgc ggttgtgcgg tgataaaagg ccatttcccc cgcgaacaag cgctaggctg
    15001 ggatcagtcg atgctggact atctggaccg caaccgcttt gacgaggtct acaaaggccc
    15061 cggcgataat ttcttcggga cgctcagcac ttcacgtccc gagatttacc ccatctactg
    15121 gtcgcagacg caaatgcagg cccgccagag tgaagaaatg gcgaatgcgc agtcgtttct
    15181 caatcgtctg tggacatttg aaagtgatgg aaagcaatgg tttaacccgg atgtgagcgt
    15241 catctaccct gaccgtatcc gccgccgtcc gcccggaacg acctccaaag gtcttggagc
    15301 gcataccgac tccggggcgc tggaacgctg gctgcttcca gcgtatcagc gcgttttcgc
    15361 caacgtcttt aatggcaatc tggcgcaata tgatccctgg catgcggcac atcgtacgga
    15421 agttgaagag tacacggtgg acaacaccac caaatgttcc gtgtttcgga cattccaggg
    15481 ctggacagcg ctctctgata tgctgcctgg tcaggggttg ctgcacgttg tgcccattcc
    15541 tgaagccatg gcgtacgtac tgttacgtcc gctgcttgat gatgtgccgg aggatgaact
    15601 gtgcggcgta gcgcccggaa gagtgttgcc ggtatcagag caatggcatc cactgttaat
    15661 tgaggcgtta accagcattc caaaactcga ggccggagac tccgtctggt ggcactgcga
    15721 cgtcatccat tccgttgccc ccgttgaaaa tcaacagggt tggggcaacg tgatgtacat
    15781 tcctgcggca ccgatgtgcg agaaaaatct tgcctacgcg cacaaggtga aggccgcact
    15841 ggaaaaaggc gcatcgccgg gcgacttccc gcacgaggac tatgaaacaa actgggaagg
    15901 acgctttacg cttgccgacc tcaacattca cggtaagcga gcgttgggca tggatgtttg
    15961 agagttaatg gaagtgaatt gatgtgggat taagaaaatc gattcgacgt tactcagatt
    16021 gctgacaagt gcgctttctt aatgcctgat gcggcgttaa cgccttatct ggcctacaaa
    16081 gtcctgcaga ttcaatatat tacaggtact gcgtaggcct gataagcgta gcgcatcagg
    16141 ctattttgca tttgtcatca gccgccgtca ccccgacagt atcggggtga cggataatca
    16201 cttactcgat ccctttacta cgcaggtaat cttcgtaatt accgctaaag tcgatcacgc
    16261 gttccggggt gatttccaga atgcgggtcg ccagggagct tacgaactca cggtcgtgtg
    16321 aaacaaagat cagcgtgccc tgatacagtt ccagcgccat gttcagtgac tcgatggatt
    16381 ccatatccag gtggttggtc ggttcgtcca tgatcagaat gttcggcttc tgcatcatta
    16441 acttaccaaa cagcatccgc cctttttccc caccggaaag cactttagct ggctttttga
    16501 tgtcgtcctg gctgaacagc aaacgaccga gaatgctgcg taccgcctgc tcgtcatcgc
    16561 cttcctgctt ccactgactc atccattcga acacggtcag atcattttca aactcatatt
    16621 cgtggtcctg ggcgtagtaa ccaatgcgcg cgttttcaga ccattttacg gtgccgctgt
    16681 ccggttgcag atcgcccacc agcgttttca tcagcgttga tttaccgacg ccgttggtac
    16741 ccagtaccgc aagtttttca ccgacctcca gcagcaggtt gagattttta aacagtggac
    16801 cgttatcaaa ccctttggtc agaccttcca cttccagcgc gttacggaac agtttcttat
    16861 cctgttcaaa acggatgaac gggttctgac ggctggaggc tttcacctct tccagtttga
    16921 ttttatcaat ctggcgcgcg cgcgaagttg cctggcgaga tttcgaggcg ttggcgctaa
    16981 agcggctaac gaaagattgc aactcagcaa tctgcgcttt cttcttggcg ttatcggcca
    17041 gcagacgttc acgcgcctgg gtcgccgccg tcatgtactc atcgtagtta cccggataaa
    17101 cgcgcagctc gccgtaatcc agatccgcca tgtgggtaca gaccatgtta aggaagtgac
    17161 ggtcgtgcga gatgatgatc atggtgctgt cacgctcgtt cagcacctgt tccagccagc
    17221 gaatggtgtc gatgtcgagg ttgttggtcg gttcgtcgag caggagaata tccggatcag
    17281 caaacagcgc ctgcgccaga agcacacgca gcttccagcc aggagcaact tcactcatcg
    17341 ggccgtagtg ctgttccact ggaattccca cgccaagcaa caattcaccg gcgcgagctt
    17401 ccgcagagta accgtccatt tcgccgtatt taacttccag atcggccact ttatagccgt
    17461 cttcctcact catttccggc aaagcataga tgcggtcacg ctcctgcttc acttcccaca
    17521 actctttatg ccccatgatc accgtatcca gcacagtgaa ctcttcaaag gcaaactgat
    17581 cctgacgcag cttaccaatg cgctcgttgg gatcgaggga aacgttaccc aaagtcggct
    17641 ctaagtcgcc gccgaggatc ttcataaagg tggatttacc actaccgttc gcgccaatca
    17701 ggccgtaacg gttgccgccg ccaaatttga cggaaatgtt ttcaaacaac ggcttactgc
    17761 cgaactgcat ggtgacgtta ctggaaacta acacaggcgt atcctgaaaa gagatatgac
    17821 aaaccgcgca ttatgccata agtctgaaag aagatcctgc tcctcgctta aggtctacac
    17881 tcaagccaaa ggcaaaaaat gtgatttcgt acacatctga tttcactgtg agctggaatg
    17941 aacttataat gcgcttccaa tactctaata ttctcaaccc aatggcctgc caggcacaaa
    18001 atctcgctta acatgaatat gaaattgaaa acattattcg cagcggcctt cgctgttgtc
    18061 ggcttttgca gtaccgcctc tgcggtaact tatcctctgc caaccgacgg gagtcgcctg
    18121 gttggtcaga atcaggtgat caccattcct gaaggtaaca ctcagccgct ggagtatttt
    18181 gccgcggagt accagatggg gctttccaat atgatggaag cgaacccggg tgtggatacc
    18241 ttcctgccga aaggcggtac tgtactgaac attccgcagc agctgatcct gccggatacc
    18301 gttcatgaag gcatcgtcat taacagtgca gagatgcgtc tgtattacta tccgaaaggg
    18361 accaacaccg ttatcgtgct gccgatcggc attggtcagt taggcaaaga tacgcctatc
    18421 aactggacca ccaaagttga gcgtaagaaa gcaggcccga cctggacgcc gaccgcaaaa
    18481 atgcacgcag agtaccgcgc tgcgggcgaa ccgcttccgg ctgtcgttcc ggcaggtccg
    18541 gataacccga tgggtctgta tgcactctac atcggtcgcc tgtatgctat ccatggcacc
    18601 aacgccaact tcggtatcgg cctgcgtgta agtcatggtt gtgtgcgtct gcgtaacgaa
    18661 gacatcaaat tcctgttcga gaaagtaccg gtcggtaccc gcgtacagtt tattgatgag
    18721 ccggtaaaag cgaccaccga gccagacggc agccgttata ttgaagtcca taacccgctg
    18781 tctaccaccg aagcccagtt tgaaggtcag gaaattgtgc caattaccct gacgaagagc
    18841 gtgcagacag tgaccggtca gccagatgtt gaccaggttg ttcttgatga agcgattaaa
    18901 aaccgctccg ggatgccggt tcgtctgaat taatcttcaa aacttaaagc aaaaggcgga
    18961 ctcataatcc gcctttttta tttgccagac cctagttggc cgggagtata actaacaaaa
    19021 catatcccac caacgccgcc cacaacagca tcggtattga atagagatgg aaacgccacc
    19081 agatgcggcg atcgttcgcc atacgtagcg caatcaaact tgccagcgat ccgggtaata
    19141 acccaaagcc acctacgttt accgcccatg ccagtaataa agacggcggc acatagttca
    19201 gcaacaatat ggtactcggc acgttactga tcacctgcga taaaccgatt gccgttaacc
    19261 ataacccggg ttcagataga tgactcacgt tacccaacac gccttgcaac gctggaagct
    19321 gggtcagtaa atggacgtcg ataaacatcg ccataaacac cagcagcagc gtccagtcca
    19381 cactgagcac cacgcgacgt gccagcagcg caaagcctgc cgccacaatc accagtcccc
    19441 acagctcttg tttgaactcc agcgccgtta gaaagacgat atacagcccc agacaactcc
    19501 acaccagccg cggtttccac tccggtgttt gcacccccgt atggtattgc agcacctttc
    19561 cagggaaaca acaccagcac aggagcagga gcgtcagcat cattgcgcca gccagcggtg
    19621 ccatttgggc aataaatccg gcaaacgaaa gaccagaacg tccccagata agaatatttt
    19681 gcgggttgcc aattggcgtc agtagcgaac cagcattgac tgccagcgcc tcaaaaataa
    19741 tcagacgatt aaccgggatc tcacacagtc tttttagcgt gatagtcagc ggaacaacaa
    19801 taaacagcgc gacatcgttg gtcagaaagg tagaaagcag cgccgccgcc agcaccataa
    19861 acatcgccag ccgacgctcc gtagcaaagc ggcgcaccat tttgcgcccc agcacatcaa
    19921 aataaccgct taactccaca cctttggtca gcagcatcag gccgcttaag gtgatgatgg
    19981 tgtgccagtc gatagcagca ggccaggatt tcggtgcaaa gggcacgaaa aagcttaatc
    20041 cgataccaac aagaattaat aactgaaaaa aacgatcgcc ttgcagcgtg cgtaaaaaag
    20101 gcaggctcat ttggtaccgt gtttctgggt aaacaaacga aaagcgtcga gcgtctcttc
    20161 actaacatgg tgctccatgc cttccgcgtc gcgacgggcg atttccggac tgacgcccaa
    20221 caccaacaag aaattttcga ctatctgatg tcgctcgcgg ctttcctgcg ccagcttctc
    20281 tccttctgcc gttaaaaaca cgccacgcca ggggatcatt tcaatcagcc ccatggttgc
    20341 cagccgctta agcattttag ccaccgtcgg ttgcgaaact cccagacgag cagccatgtc
    20401 cacctgacga gcttccccca cttccctgat caagtcagaa atcagctcaa cgtaatcatc
    20461 aataagctcg cgccgatgcg cctctctgac ctggcggaac ccttcaacgt gctcttccac
    20521 gttcactaac tgcgtcactt tttttgctgt tggcgtacct gcgcgacgac tcattgtgct
    20581 tcctcattat ggtgacgcat acatagcgtt ctcatttcgt gcgcacattg taaaccagag
    20641 ttgcgaaggt acaaaaaatt aacgttttag caatagctat ataatatagc ctgtgctata
    20701 tctgtatgta atgcaatcat ccctcaagga tcgacgggat tagcaagtca ggaggtctta
    20761 tgaatgagtt caagaggtgt atgcgcgtgt ttagtcattc tccctttaaa gtacggttaa
    20821 tactgctctc tatgttgtgc gatatggtca acaacaaacc gcagcaagat aaaccttccg
    20881 ataaatagcg gcgtcgcggt acgccgcttc actcctgctt tcatgcaggc ataacgcgtt
    20941 ttggcctgaa aaaccccact ttttgtcgga tttgcaatcc ccttcgcaaa agatttgttc
    21001 gtcagtagtt gacctgaacg gcggctcgct ctatcttctt gcagccctgc gtatattgcg
    21061 gctcgcggat gcggacccct ttccactctt cacgcactct tgcaggtatt gacccttgac
    21121 gccagggtaa gcacatggcg tttgttacga tagtggcata tgaatttaac cctcaaagaa
    21181 tcgcttgtta cccgtagccg ggtatttagc ccgtggactg cgttctactt tttacagtcg
    21241 ctattaatta acctcggctt aggttacccc ttcagtttgc tctacaccgc tgcgtttacg
    21301 gctattttgc ttttgctatg gcgaacattg cctcgcgtac aaaaagttct ggtcggtgtc
    21361 agttcgctgg tggcggcttg ttatttccct tttgctcagg cctacggcgc gcctaatttc
    21421 aatacattgc tggcattgca ctccaccaat atggaagagt cgaccgaaat cctgacgatt
    21481 tttccgtggt acagctacct ggtcggctta tttatttttg cgctcggcgt aatagcaatc
    21541 aggcgaaaaa aagagaatga aaaagcgcgc tggaatacct tcgacagcct gtgtctggta
    21601 ttcagtgtgg cgacattttt tgttgctccc gtgcaaaacc tggcctgggg tggcgtattt
    21661 aaactgaaag atactggcta tccggtattt cgttttgcta aggatgtcat cgtcaataat
    21721 aacgaggtga ttgaagagca agaacggatg gcaaaacttt ccggaatgaa agatacctgg
    21781 acggtcactg ccgttaagcc gaagtatcag acctatgtgg tggtgatcgg tgaaagcgcg
    21841 cgtcgcgatg ccctcggtgc ctttggcggt cactgggaca ataccccgtt tgccagcagc
    21901 gttaacggtt tgatatttgc tgactacatt gccgccagtg gctccacgca gaaatcgctt
    21961 ggcttaacgc tcaatcgcgt agtcgatggc aaaccacagt ttcaggataa ctttgtcacc
    22021 ctggcaaatc gcgcgggctt ccagacctgg tggttttcca accagggcca aatcggcgaa
    22081 tacgatactg ctatcgccag catcgccaaa cgtgcagatg aagtgtactt cctgaaagaa
    22141 ggtaattttg aagcagataa aaacacgaaa gacgaagcgt tactggatat gaccgctcaa
    22201 gtgctggcgc aagagcactc gcaaccgcag ctgattgttc tgcatctgat aggctcgcat
    22261 ccgcaggcct gcgacaggac acaaggcaaa tacgaaacct ttgtgcaatc gaaagaaacg
    22321 tcgtgctatc tctataccat gacgcaaacg gacgatttac tgcgcaagct gtacgatcag
    22381 ttacgcaaca gcggcagcag cttctctctg gtttactttt ctgaccacgg tctggccttt
    22441 aaagagcgcg gcaaagacgt gcaatacctt gcccatgatg ataaatatca gcaaaatttc
    22501 caggtgcctt ttatggtcat ttccagcgac gataaagcgc atcgggtgat taaagcccgc
    22561 cgctcagcca atgacttctt aggctttttc tcgcagtgga cgggaattaa agcgaaggaa
    22621 ataaatatca aatacccgtt tatatctgag aagaaagccg ggccgatata catcaccaac
    22681 ttccagttac agaaggtgga ttacaaccat ctcggaaccg atattttcga cccgaaacct
    22741 taaaaacaaa aatccgcccc gagaggcgga ttttttatat caccaaagtg attagaagcg
    22801 gtaaccaaca ccggcaatcc aggtgcctac gtcaacgcta cgaatacggc tctgctcgta
    22861 agagaagtcc agagcaacgt tttccatcgg gttgaactgc agaccagcac cgtaggagaa
    22921 accgtagtcg ctggtgtcgt gtttgtaggt cgggtattca gtggtctgga atttaccata
    22981 acccacaccc actacaccgt agatgcttgc ccagtcgtta atgcggtaag ccggaccagc
    23041 agtgatgccg tagtactggt ttttgttgta gtcaccagag cttgcagtac gacttttctc
    23101 ggtgtaagtg aaagaaccga tcacacccag cgggctgttg tcttcttcat agcggtattt
    23161 caggttgaaa ccgcccattt tgttcatttg gccctgagcg tcgctctgtg cgtaaccgcc
    23221 agttacggta gaagtcgcag ctacggaagt acctgcggtg aaagccagaa ctgcggccag
    23281 tgctgaaaga catgcaattt ttttcataac cacctcaaat gtgattcaaa taagtcctaa
    23341 gttttaaata tatcaaaaat taatgggaaa ctcttcgcga tttgtgatgt ctaacgggcc
    23401 atttcatgta acagaacgtt tccatacacc gctatccatc taaatttaaa tcactttttc
    23461 agagaactgc gtaagtatta cgcatgtttt ccctgtcatt catccagatt attcctaatc
    23521 accagactaa tgattccatc aatcctggcg cattttagtc aaaacggggg aaaatttttt
    23581 caacaaatgc tcaaccagca ttgggtatat ccagtacact ccacgcttta cttaagtcta
    23641 gatatttgtg ggagaaagga tgcctggttc attacgtaaa atgccggtct ggttaccaat
    23701 agtcatattg ctcgttgcca tggcgtctat tcagggtgga gcctcgttag ctaagtcact
    23761 ttttcctctg gtgggcgcac cgggtgtcac tgcgctgcgt ctggcattag gaacgctgat
    23821 cctcatcgcg ttctttaagc catggcgact gcgctttgcc aaagagcaac ggttaccgct
    23881 gttgttttac ggcgtttcgc tgggtgggat gaattatctt ttttatcttt ctattcagac
    23941 agtaccgctg ggtattgcgg tggcgctgga gttcaccgga ccactggcgg tggcgctgtt
    24001 ctcttctcgt cgcccggtag atttcgtctg ggttgtgctg gcggttcttg gtctgtggtt
    24061 cctgctaccg ctggggcaag acgtttccca tgtcgattta accggctgtg cgctggcact
    24121 gggggccggg gcttgttggg ctatttacat tttaagtggg caacgcgcag gagcggaaca
    24181 tggccctgcg acggtggcaa ttggttcgtt gattgcagcg ttaattttcg tgccaattgg
    24241 agcgcttcag gctggtgaag cactctggca ctggtcggtt attccattgg gtctggctgt
    24301 cgctattctc tcgaccgctc tgccttattc gctggaaatg attgccctca cccgtttgcc
    24361 aacacggaca tttggtacgc tgatgagcat ggaaccggcg ctggctgccg tttccgggat
    24421 gattttcctc ggagaaacac tgacacccat acagctgctg gcgctcggcg ctatcatcgc
    24481 cgcttcaatg gggtctacgc tgacagtacg caaagagagc aaaataaaag aattagacat
    24541 taattaaatt tacatttctg catggttatg cataaccatg cagaatttct cgctactttt
    24601 cctctacacc gtctttatat atcgaattat gcaaaagcat atttattccg aaaattcctg
    24661 gcgagcagat aaataagaat tgttcttatc aatatatcta actcattgaa tctttattag
    24721 ttttgttttt cacgcttgtt accactatta gtgtgatagg aacagccaga atagcggaac
    24781 acatagccgg tgctatactt agtctcgtta attactggga cataacatca agaggatatg
    24841 aaattatgag taccgctaaa ttagttaaat caaaagcgac caatctgctt tatacccgca
    24901 acgatgtctc cgacagcgag aaaaaagcaa cagtagagtt gctgaatcgc caggttatcc
    24961 agtttattga tctttctttg attaccaaac aagcgcactg gaacatgcgc ggcgctaact
    25021 tcattgccgt acatgaaatg ctggatggct tccgcaccgc actgatcgat catctggata
    25081 ccatggcaga acgtgcagtg cagctgggcg gtgtagctct ggggaccact caagttatca
    25141 acagcaaaac cccgctgaaa agttacccgc tggacatcca caacgttcag gatcacctga
    25201 aagaactggc tgaccgttac gcaatcgtcg ctaatgacgt acgcaaagcg attggcgaag
    25261 cgaaagatga cgacaccgca gatatcctga ccgccgcgtc tcgcgacctg gataaattcc
    25321 tgtggtttat cgagtctaac atcgaataaa tccatcgctg atggtgcaga actttagtac
    25381 ccgataaaag cggcttcctg acaggaggcc gttttgtttt gcagcccacc tcaacgcact
    25441 tatttagtgc atccatctgc tatctccagc tgattaagta aattttttgt atccacatca
    25501 tcacacaatc gttacataaa gattgttttt tcatcaggtt ttacgctaaa taatcactgt
    25561 gttgagtgca caattttagc gcaccagatt ggtgccccag aatggtgcat cttcagggta
    25621 ttgccctata aatcgtgcat cacgtttttg ccgcatctct aaaaatcaat gagttgcaaa
    25681 actggcacga ttttttcata tatgtgaatg tcacgcaggg gatcgtcccg tggatagaaa
    25741 aaaggaaatg ctatgaagtc tgtattaaaa gtttcactgg ctgcactgac cctggttttt
    25801 gcggtttctt ctcatgccgc ggataaaaaa ttagttgtcg cgacggatac cgccttcgtt
    25861 ccgtttgaat ttaaacaggg cgataaatat gtgggctttg acgttgatct gtgggctgcc
    25921 atcgctaaag agctgaagct ggattacgaa ctgaagccga tggatttcag tgggatcatt
    25981 ccggcactgc aaaccaaaaa cgtcgatctg gcgctggcgg gcattaccat caccgacgag
    26041 cgtaaaaaag cgatcgattt ctctgacggc tactacaaaa gcggcctgtt agtgatggtg
    26101 aaagctaaca ataacgatgt gaaaagcgtg aaagatctcg acgggaaagt ggttgctgtg
    26161 aagagcggta ctggctccgt tgattacgcg aaagcaaaca tcaaaactaa agatctgcgt
    26221 cagttcccga acatcgataa cgcctatatg gaactgggca ccaaccgcgc agacgccgtt
    26281 ctgcacgata cgccaaacat tctgtacttc atcaaaaccg ccggtaacgg tcagttcaaa
    26341 gcggtaggtg actctctgga agcgcagcaa tacggtattg cgttcccgaa aggtagcgac
    26401 gagctgcgtg acaaagtcaa cggcgcgttg aaaaccctgc gcgagaacgg aacttacaac
    26461 gaaatctaca aaaaatggtt cggtactgaa ccgaaataat aacgctacac ctgtaaagcg
    26521 cactggcagt tccctctccc ctctggggag aggattaggg tgaggggcgc aaacccgctc
    26581 cggggccatt aattaccctg aatttgatta tttacaccac ggtaacagga acaacatatg
    26641 cagtttgact ggagtgccat ctggcctgcc attccgcttc tgattgaagg tgccaaaatg
    26701 accctgtgga tttcggtcct cggtctggct ggcggtctgg taatcggatt gctggcaggt
    26761 tttgcacgca ccttcggtgg ttggatagcc aaccacgtcg cgctggtctt tattgaagtg
    26821 atccgcggca cacctatcgt cgtccaggtg atgtttatct atttcgccct gccgatggcg
    26881 tttaacgact tacgcatcga cccatttact gcggcggtgg tcaccatcat gatcaactcc
    26941 ggcgcgtaca ttgcggaaat cacgcgtggt gcggtgctgt ctattcacaa aggttttcgt
    27001 gaagcaggac tggcgctcgg tctttcacgt tgggaaacca ttcgctacgt cattttaccg
    27061 ctggcactgc gtcgtatgct gccgccgctg ggtaaccagt ggatcatcag cattaaagac
    27121 acctcgctgt ttattgttat cggcgtggcg gaactgaccc gtcaggggca agaaattatt
    27181 gccggtaact tccgcgccct tgagatctgg agcgccgtgg cggtgttcta tctgattatt
    27241 accctggtgc tgagctttat tctgcgtcgt ctggaaagaa ggatgaaaat cctgtgattg
    27301 aatttaaaaa cgtctccaag cactttggcc caacccaggt gctgcacaat atcgatttga
    27361 acattgccca gggcgaagtc gtggtgatta tcgggccgtc cggttccggt aaatcgaccc
    27421 tgctgcgctg catcaacaaa ctggaagaaa tcacctccgg cgatctgatt gtcgatggcc
    27481 tgaaggttaa cgatccgaaa gttgacgagc gcctgattcg ccaggaagca ggtatggtgt
    27541 tccagcagtt ttacctcttc ccgcatctga cggcgctgga aaacgtcatg tttggtccgc
    27601 tacgcgtgcg tggcgcgaac aaagaagagg cggaaaaact ggcgcgtgag ctgctggcga
    27661 aagtcggtct ggcagaacgt gcacatcact acccttccga actttctggt ggtcaacagc
    27721 agcgtgtggc gattgcccgc gcgctggcgg tgaagccgaa aatgatgctg tttgatgaac
    27781 cgacttccgc tcttgacccg gaactgcgcc atgaagtgct gaaggttatg caggatctgg
    27841 ctgaagaagg gatgacgatg gtgatcgtga cccacgaaat cggttttgcc gagaaagtag
    27901 cttcgcggct gatctttatc gacaaaggcc ggattgcgga agatggcaat ccgcaggtgt
    27961 tgatcaagaa cccgccgagc cagcgcttgc aggaattttt gcagcacgtc tcttaataag
    28021 acacattgcc tgatgcgcta cgcttatcag gcctacagga tatctggcaa cttattaaaa
    28081 ttgcatgaac ttgtaggacg gataaggcgt tcacgccgca tccggcaaaa aagcccgcac
    28141 gttgtcagca atctgcttaa tatcccttcc tccctttcac ccgaaaggga ggcacaccag
    28201 attcctctca tttaaaatcg cccc
//
LOCUS       DAJVUP010000036        27850 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.036, whole genome shotgun sequence.
ACCESSION   DAJVUP010000036 DAJVUP010000000
VERSION     DAJVUP010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27850
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.036"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..527
                     /locus_tag="OQQ75_001453"
     CDS             <1..527
                     /locus_tag="OQQ75_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
                     /protein_id="HCS1975831.1"
                     /translation="KYKIMANHHGIIFDEQRKRYIIGSITVSIDEMTNALDPVELAEI
                     INKKHHAVINGKKFKNSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHN
                     GNGGRECIGETGTVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRN
                     GLMPLIRRRTMLQL"
     gene            893..1960
                     /locus_tag="OQQ75_001454"
     CDS             893..1960
                     /locus_tag="OQQ75_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1975832.1"
                     /translation="MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIE
                     ATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVA
                     AAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA
                     ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPR
                     DGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAP
                     DLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGV
                     AWVRVNEELPWPDDLVVRLPQ"
     gene            1957..4692
                     /gene="rbbA"
                     /locus_tag="OQQ75_001455"
     CDS             1957..4692
                     /gene="rbbA"
                     /locus_tag="OQQ75_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated ATPase/putative transporter
                     RbbA"
                     /protein_id="HCS1975833.1"
                     /translation="MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLI
                     GPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYH
                     TLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCC
                     ALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWL
                     VAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIA
                     IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW
                     LFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS
                     ERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM
                     VDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI
                     AYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSLRRLFSYSRREALELRRDPVRSTLALM
                     GTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYDEL
                     DRRMSAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL
                     QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSTLSVVR
                     EKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTL
                     TLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR
                     WIGEVYPTSHFLTIARGTFSKALDLTDMWQLFIPLLIAIPLVMGLSILLLKKQEG"
     gene            4692..5816
                     /locus_tag="OQQ75_001456"
     CDS             4692..5816
                     /locus_tag="OQQ75_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709253.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1975834.1"
                     /translation="MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTP
                     GSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIP
                     PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVS
                     LETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPF
                     EIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF
                     MGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAI
                     LYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA"
     gene            5889..6164
                     /locus_tag="OQQ75_001457"
     CDS             5889..6164
                     /locus_tag="OQQ75_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HCS1975835.1"
                     /translation="MRTKVQALRKKQKNTLDQIFKTPVPQGIKWSDIESLVKALGGEI
                     KEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESVRDWLLSIGVKP"
     gene            6161..6520
                     /locus_tag="OQQ75_001458"
     CDS             6161..6520
                     /locus_tag="OQQ75_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HCS1975836.1"
                     /translation="MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSD
                     SIQGLQKEGELSLLEYLEDCKAAGIEPYARTEKIKTFTLRYPESLSERLNNAAAQQQV
                     SVNTYIIETLNERLNHL"
     gene            complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="OQQ75_001459"
     CDS             complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="OQQ75_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-responsive transcriptional regulator
                     NikR"
                     /protein_id="HCS1975837.1"
                     /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA
                     TQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK
                     GDMGDVQHFADDVIAQRGVRHGHLQCLPKED"
     gene            complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="OQQ75_001460"
     CDS             complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="OQQ75_001460"
                     /EC_number="7.2.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikE"
                     /protein_id="HCS1975838.1"
                     /translation="MTLLNVSGLSHHYAHGGFSGKHQHQAVLNNVSLTLKSGETVALL
                     GRSGCGKSTLARLLVGLESPSQGNISWRGESLAKLNRAQRKAFRRDIQMVFQDSISAV
                     NPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRV
                     CLARALAVEPKLLILDETVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF
                     CQRVMVMDNGQIVETQAVGDKLTFSSDAGRVLQNAVLPAFPVRRRATEKV"
     gene            complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="OQQ75_001461"
     CDS             complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="OQQ75_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikD"
                     /protein_id="HCS1975839.1"
                     /translation="MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSL
                     TCAATLGILPAGVRQTAGEILADGKAVYPCALRGIKIATIMQNPRSAFNPLHTMHTHA
                     RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
                     FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGK
                     IVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS"
     gene            complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="OQQ75_001462"
     CDS             complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="OQQ75_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikC"
                     /protein_id="HCS1975840.1"
                     /translation="MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSH
                     LLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGR
                     VDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
                     RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVT
                     APTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHA
                     H"
     gene            complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="OQQ75_001463"
     CDS             complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="OQQ75_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikB"
                     /protein_id="HCS1975841.1"
                     /translation="MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNL
                     PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATL
                     ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV
                     YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLND
                     KQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV
                     IQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA"
     gene            complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="OQQ75_001464"
     CDS             complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="OQQ75_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter, nickel/metallophore
                     periplasmic binding protein"
                     /protein_id="HCS1975842.1"
                     /translation="MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLY
                     TPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKLSNGEPFD
                     AEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRP
                     FRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITF
                     NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALN
                     TAKTPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPRQYDP
                     QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGAD
                     VSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADK
                     PLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYA
                     PIATEIPFEQIKPVKP"
     gene            complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="OQQ75_001465"
     CDS             complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="OQQ75_001465"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase AcpT"
                     /protein_id="HCS1975843.1"
                     /translation="MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHT
                     LSPLPEIIYGEQGKPAFAPETPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWR
                     WLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSS
                     LSVSHCQLENLSLAICTPTPFTLTADSVQWIDSVN"
     gene            complement(12715..13751)
                     /locus_tag="OQQ75_001466"
                     /pseudo
     CDS             complement(12715..13751)
                     /locus_tag="OQQ75_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709244.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
     gene            13883..15100
                     /locus_tag="OQQ75_001467"
     CDS             13883..15100
                     /locus_tag="OQQ75_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417930.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1975844.1"
                     /translation="MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYV
                     HDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVFGLCGCFLSGLGYLT
                     AGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTY
                     GAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLG
                     RVWLYGMALALASAGFGVIATFITLFYDAKSWDGAAFALTLFSCAFVGTRLLFPNGIN
                     RIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVP
                     QQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAGLVAIALLLTWRLKK
                     RPPEHVPEAASSS"
     gene            complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="OQQ75_001468"
     CDS             complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="OQQ75_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage sensitivity protein DcrB"
                     /protein_id="HCS1975845.1"
                     /translation="MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAENNATGNPVN
                     LLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKR
                     LEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
                     ITLPADDQQKAQTTAENIINTLVIQ"
     gene            complement(15734..16399)
                     /locus_tag="OQQ75_001469"
     CDS             complement(15734..16399)
                     /locus_tag="OQQ75_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HCS1975846.1"
                     /translation="MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTW
                     GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALA
                     HFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFF
                     IAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINAL
                     QAS"
     gene            16620..16865
                     /gene="tusA"
                     /locus_tag="OQQ75_001470"
     CDS             16620..16865
                     /gene="tusA"
                     /locus_tag="OQQ75_001470"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HCS1975847.1"
                     /translation="MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD
                     DPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG"
     gene            complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="OQQ75_001471"
     CDS             complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="OQQ75_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase
                     ZntA"
                     /protein_id="HCS1975848.1"
                     /translation="MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSSPTLSEN
                     VSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVES
                     AVQKAGYSLRDEQAADEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATT
                     LVGLYPIAHQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG
                     WAASRARQGVSALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL
                     SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIE
                     EAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGC
                     PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTA
                     IHPATGISESELLTLAAAVEQSATHPLAQAIVREAQVAALAIPAAESQRALVGSGIEA
                     QVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAA
                     TAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEYKVKAVTELNQHAPLA
                     MVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANI
                     RQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR"
     gene            complement(19239..19865)
                     /locus_tag="OQQ75_001472"
     CDS             complement(19239..19865)
                     /locus_tag="OQQ75_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HCS1975849.1"
                     /translation="MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQ
                     APMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSF
                     FWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALS
                     AFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYF"
     gene            20006..20365
                     /locus_tag="OQQ75_001473"
     CDS             20006..20365
                     /locus_tag="OQQ75_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HCS1975850.1"
                     /translation="MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVV
                     VSNKREKPINDRRSRQQEVTPAGTSMRYEASFKPQSGGMEQTFRLDAQQYHALTVGDK
                     GTLSYKGTRFVSFVGEQ"
     gene            complement(20368..20637)
                     /locus_tag="OQQ75_001474"
     CDS             complement(20368..20637)
                     /locus_tag="OQQ75_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 family protein"
                     /protein_id="HCS1975851.1"
                     /translation="MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMH
                     GMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLVWQKKFKVKK"
     gene            complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="OQQ75_001475"
     CDS             complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="OQQ75_001475"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase"
                     /protein_id="HCS1975852.1"
                     /translation="MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF
                     NWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN
                     ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV
                     ENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD"
     gene            21373..22866
                     /gene="ftsY"
                     /locus_tag="OQQ75_001476"
     CDS             21373..22866
                     /gene="ftsY"
                     /locus_tag="OQQ75_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HCS1975853.1"
                     /translation="MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEP
                     AKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETP
                     EPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
                     AAEAAEEAVMVVPPVEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLF
                     RGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMG
                     EILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFELQGKSVMLAAGDTFRA
                     AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSH
                     LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDG
                     TAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED"
     gene            22869..23537
                     /gene="ftsE"
                     /locus_tag="OQQ75_001477"
     CDS             22869..23537
                     /gene="ftsE"
                     /locus_tag="OQQ75_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HCS1975854.1"
                     /translation="MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTL
                     LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI
                     PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL
                     ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGG
                     VGHE"
     gene            23530..24588
                     /gene="ftsX"
                     /locus_tag="OQQ75_001478"
     CDS             23530..24588
                     /gene="ftsX"
                     /locus_tag="OQQ75_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HCS1975855.1"
                     /translation="MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKP
                     VNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAA
                     TQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGG
                     ALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALT
                     GLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGG
                     ALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTNFDINGLSFDECLLLLLVCSMIG
                     WVAAWLATVQHLRHFTPE"
     gene            24833..25687
                     /gene="rpoH"
                     /locus_tag="OQQ75_001479"
     CDS             24833..25687
                     /gene="rpoH"
                     /locus_tag="OQQ75_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HCS1975856.1"
                     /translation="MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYH
                     GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE
                     LGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWE
                     EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK
                     KLRAAIEA"
     gene            25958..27061
                     /gene="livJ"
                     /locus_tag="OQQ75_001480"
     CDS             25958..27061
                     /gene="livJ"
                     /locus_tag="OQQ75_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     substrate-binding protein LivJ"
                     /protein_id="HCS1975857.1"
                     /translation="MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQ
                     EFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVK
                     PQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENID
                     FVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD
                     QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDT
                     VMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK"
     gene            complement(27260..27643)
                     /gene="panM"
                     /locus_tag="OQQ75_001481"
     CDS             complement(27260..27643)
                     /gene="panM"
                     /locus_tag="OQQ75_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase autocleavage activator
                     PanM"
                     /protein_id="HCS1975858.1"
                     /translation="MKLTIIRLENFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARF
                     NERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGV
                     EDRGVMTAFMQALGFTAQQGGWEKR"
BASE COUNT         6593 a         7227 c         7741 g         6289 t
ORIGIN      
        1 ccaaatacaa aataatggca aatcatcatg ggataatttt tgatgagcag cgaaaacgtt
       61 acattatagg atcgataaca gtctctattg atgaaatgac caatgctctc gatccggtcg
      121 aattagcgga aattattaat aaaaagcacc atgctgtaat taatggcaaa aagtttaaaa
      181 atagccgggc tatctcttgt cgatccttta atcgttattt ttctgtttcg acagattaca
      241 gacctaaact tgaagcacta ttagcatgct cacaaatgtt aggtataaat caagttgttg
      301 cacataacgg taatggtgga agagaatgta taggtgaaac ggggacagtt ttaggtctta
      361 acgcccgtga cagtaaacat gctggaagaa tgttcagcat gcataattgc caaattaacc
      421 ctggtgcagg gcctgagata accactccct ggaagtctta ccagcatgaa aaaaacagaa
      481 atggacttat gcctttgatt agaaggcgca caatgttaca gctctgaacc atagacaaca
      541 tgaatattaa tgttactatc tggttgagac tgttgataaa acgtaaaaag gaatgctctg
      601 ttcctgcaac tgaacaggcg tgaaacgcga tccaacagga tggataccgt tttgtcagcc
      661 agttttatag atcacactta tgagtatgcg tgtttcattt acggccagga atgctgatga
      721 tgacaacatt actacccgtt ttcactaagc cttccccgtt ggcgctcaat gctctgcgcg
      781 ctggtcgtat ttgtcgtttc cttcttatcc cggatggaag aatccgctga acgtcgttcg
      841 gcggcagttg taacacgcgt cgtttgctta cagggattat ggcgggccga ttatggataa
      901 gagtaagcgc catctggcgt ggtgggttgt cggggcactg gcggtggctg ccgtcgtggc
      961 gtggtggctg ttgcgcccgg cgggtgtgcc ggaaggcttt gctgtcagca atgggcgcat
     1021 tgaagcgacg gaagtggata tcgccagcaa aattgccggg cgtatcgaca ccattctggt
     1081 gaaagaaggc cagtttgttc gcgaaggtga agtgctggcg aagatggata ctcgtgtgtt
     1141 gcaggaacag cgactggaag ccatcgcgca aatcaaagag gcacaaagcg ccgttgccgc
     1201 cgcgcaggct ttgctggagc aacgacaaag cgaaactcgc gccgcgcagt cgctggttaa
     1261 tcaacgccag gcagaactgg actccgtagc aaaacgtcat atgcgttccc gttcactggc
     1321 ccaacgaggg gctatttctg cgcaacagct ggatgacgac cgcgccgccg ctgagagcgc
     1381 ccgagctgcg ctggaatcgg caaaagctca ggtttctgct tctaaagccg ctatagaggc
     1441 ggcacgtacc aatatcattc aggcgcaaac ccgcgtcgaa gcggcacaag ccactgaacg
     1501 gcgcattgcc gcagatatcg atgacagcga actgaaagcc ccgcgtgacg gacgcgtgca
     1561 gtatcgggtt gccgagccag gggaagtgct ggcggcaggc ggtcgggtgc tgaatatggt
     1621 cgatctcagc gacgtctata tgactttctt cctgccaacc gaacaggcgg gcacgctaaa
     1681 actgggcggt gaagcacggc tgatcctcga tgccgcgcca gatctgcgta ttccggcgac
     1741 catcagtttt gtcgccagcg tcgcccagtt cacgccaaaa accgtcgaaa ccagcgatga
     1801 acggctgaaa ctgatgttcc gcgtcaaagc gcgtatccca ccggaattac tccagcagca
     1861 tctggaatat gtcaaaacgg gcttgccggg cgtagcgtgg gtgcgggtga atgaagaact
     1921 tccgtggcct gacgacctgg tggtgaggtt gccgcaatga cgcatctgga actggttccc
     1981 gtcccgcctg tcgcgcaact ggcgggcgtg agccagcatt atggaaaaac cgttgcgctg
     2041 aacaatatca ctctcgatat tccggcccgc tgtatggtcg ggctgattgg cccggacggc
     2101 gtcgggaagt cgagtttgtt gtcgttgatt tccggtgctc gtgtcattga gcagggcaat
     2161 gtgatggtgc tgggcggcga tatgcgcgac ccgaagcatc gccgcgacgt ctgcccgcgc
     2221 atcgcctgga tgccgcaggg gctgggcaaa aacctctacc acaccttgtc ggtgtatgaa
     2281 aacgtcgatt ttttcgcccg cctgttcggt cacgacaaag cggagcggga agtgcgaatt
     2341 aatgagctgc tgaccagcac ggggttagca ccgtttcgcg atcgtccggc agggaaactc
     2401 tccggcggga tgaagcaaaa acttgggctg tgctgcgcgt taatccacga cccggaactg
     2461 ttgatccttg atgagccaac aacgggggtt gacccgctct cccgcgccca gttctgggat
     2521 ctgatcgaca gtattcgcca gcggcagagc aatatgagcg tgctggtcgc caccgcctat
     2581 atggaagagg ccgaacgctt cgactggctg gtagcgatga atgccggaga agtgctggca
     2641 accggcagcg ccgaagagct gcggcagcaa acgcaaagcg ccacgctgga agaagcattt
     2701 attaatctgt taccgcaagc gcaacgccag gcgcatcagg cggtagtgat cccaccgtat
     2761 caacctgaaa acgcagagat tgccatcgaa gcgcgcgatc tgaccatgcg ttttggttcc
     2821 ttcgttgccg ttgatcacgt caatttccgc attccacgcg gggagatttt tggattcctt
     2881 ggttcgaacg gctgcggtaa atccaccacc atgaaaatgc ttaccggact gctgcccgcc
     2941 agcgaaggtg aggcgtggct atttgggcaa ccggttgatc caaaagatat cgatacccgc
     3001 cgtcgtgtgg gctatatgtc gcaggcgttt tcgctctata acgaactcac cgtgcggcaa
     3061 aacctggagt tacatgcccg tttgtttcac atcccggaag cggaaattcc cgcgcgagtg
     3121 gctgaaatga gcgagcgttt taagctcaac gacgttgaag atgttctgcc ggagtcattg
     3181 ccgctcggca ttcgccagcg gctttcgctg gcggtggcgg tgattcatcg cccggagatg
     3241 ttaatcctcg atgagcctac ttctggtgtc gatccggtgg cgagggatat gttctggcag
     3301 ttgatggtcg atctctcgcg ccaggacaaa gtgactatct tcatctccac ccactttatg
     3361 aacgaagcgg aacgttgcga ccgcatctca ctgatgcacg ccggaaaagt gcttgccagc
     3421 ggtacaccgc aggaactggt tgagaaacgc ggagccgcca gtctggaaga ggcatttatc
     3481 gcctatttgc aggaagcggc agggcagagc aacgaagccg aagcgccgcc cgtggtacac
     3541 gacaccaccc acgcgccgcg tcagggattt agcctgcgcc gtctgtttag ctacagccgc
     3601 cgcgaagcgc tggaactgcg acgcgatcca gtacgttcga cgctggcgct gatgggaacg
     3661 gtgatcctga tgctgataat gggttacggc atcagtatgg atgtggaaaa cctgcgcttt
     3721 gcggtgctcg accgcgacca gaccgtcagt agccaggcgt ggacactcaa cctctccggt
     3781 tcccgttact ttatcgaaca gccgccgctc accagttatg acgagcttga tcgtcggatg
     3841 agtgcgggcg atatcacggt ggcgattgag atcccgccca atttcgggcg cgatatcgcg
     3901 cgtggtacgc ctgtggaact cggcgtctgg atcgacggag cgatgcccag tcgtgccgaa
     3961 acggtaaaag gttacgtgca ggcaatgcac cagagttggc ttcaggatgt ggcgagccga
     4021 caatcgacac ccgccagcca aagcgggctg atgaacattg agacgcgtta tcgctataac
     4081 ccggacgtaa aaagcctgcc agcaattgtt ccggcggtga tcccgcttct gctgatgatg
     4141 atcccgtcaa tgctaagcac ccttagcgtg gtgcgggaaa aagagcttgg gtcgattatc
     4201 aacctttacg tgacccccac cacgcgtagt gaatttttgc ttggtaaaca gttgccatac
     4261 atcgcgctgg ggatgctgaa ctttttcctg ctctgcggcc tgtcggtgtt tgtgtttggc
     4321 gtaccgcata aaggcagttt cctgacgctc accctggcgg cgctgctgta tatcatcatt
     4381 gccaccggaa tggggctgct gatctccacc tttatgaaaa gccagattgc cgccattttc
     4441 ggaacggcga ttatcacgtt gatcccggcg acacagtttt ccgggatgat cgatccggta
     4501 gcttcgctgg aagggcctgg acgttggatc ggcgaggttt acccgaccag tcattttctg
     4561 actatcgccc gcgggacgtt ctcgaaagcg ctggatctga ctgatatgtg gcaacttttt
     4621 atcccgttgc tgatagccat cccgctggtg atgggcttaa gtatcctgct gctgaaaaaa
     4681 caggagggat gatgcgccat ttacgcaata tttttaatct gggtatcaaa gagttgcgca
     4741 gtctgctcgg tgataaagcg atgctgacgc tgattgtctt ctcgtttacg gtgtcggtgt
     4801 attcgtcagc gaccgttacg ccaggatcgt tgaacctcgc gccgatcgcc attgccgata
     4861 tggatcaatc gcagttatcg aaccggatcg ttaacagctt ctatcgtccg tggtttttgc
     4921 caccggagat gatcaccgcc gatgagatgg atgccggact ggacgccgga cgctatacct
     4981 tcgcgataaa tattccgcct aattttcagc gtgatgtcct cgccggacgc cagccggata
     5041 ttcaggtgaa cgtcgatgcc acgcgcatga gccaggcatt taccggcaat gggtatatcc
     5101 agaatattat caacggtgaa gtgaacagct ttgtcgcgcg ctaccgtgat aacagcgaac
     5161 cgttggtatc gctggaaacc cggatgcgct ttaacccgaa ccttgatccc gcgtggtttg
     5221 gcggggtgat ggcgatcatc aacaacatta ccatgctggc gattgtattg accggatcgg
     5281 cgctgatccg cgagcgtgaa cacggcacgg tggaacactt actggtgatg ccgataacgc
     5341 cgtttgagat catgatggcg aagatctggt cgatggggct ggtggtgctg gtggtatcgg
     5401 gattatcgct ggtgctgatg gtgaaaggtg tactgggcgt accgattgaa ggctcgatcc
     5461 cgctgtttat gctgggcgtg gcgctcagtc tgtttgccac cacgtcaatc ggcattttta
     5521 tggggacgat agcgcgttca atgccgcaac tggggctgct ggtgattctg gtgctgctgc
     5581 cgctgcaaat gctttccggt ggatccacgc cgcgcgaaag tatgccgcag atggtgcagg
     5641 acattatgct gaccatgccg acgacacact ttgttagcct cgcgcaggcc attctctacc
     5701 ggggtgccgg attcgaaatc gtctggccgc agttcctgac gctgatggca attggcggcg
     5761 cgtttttcac cattgcgctg ctgcgattca ggaagacgat tgggacaatg gcgtaaggaa
     5821 gggaaacttg acttcatact gtgatgtcat actattgatg tcataaagtg aagtcataag
     5881 gacatgccat gagaaccaag gtacaggctt tacggaagaa acaaaaaaat acattggatc
     5941 aaatatttaa aactcctgtt cctcaaggga tcaagtggtc tgatatagag tcactggtta
     6001 aagcattagg cggagaaatt aaggaaggaa gaggttcgcg ttgtaagttc atactaaata
     6061 tgagcgttgc gtgtttccat cggcctcatc cgtcgccaga taccgataaa ggcgctgtag
     6121 aaagcgtgcg tgactggtta ctaagtatag gggtaaaacc atgatcaaac tgaagacgcc
     6181 aaactctatg gagattgccg ggcaaccagc tgttattacc tacgtgccag aactgaatgc
     6241 atttcgtggc aaattcctgg gcttgtcagg ttattgtgat tttgtctctg acagcattca
     6301 ggggctgcaa aaagaagggg aactttccct gctagagtat cttgaggatt gtaaagctgc
     6361 gggtattgag ccgtatgcgc gtacagaaaa gattaagacc tttacgttac gctatccaga
     6421 atcgctgagt gaacgcctta ataatgcggc tgcgcagcaa caagtctctg ttaataccta
     6481 tattattgaa acactgaatg agcgtttgaa tcatttataa attttagcgg cgtacattac
     6541 gcagaatatc tgcctttaca ggatctatct atgcaactga acttaatttt ataaattaag
     6601 ttcagttaat atcttttctt tcctcgtttc agaaataact caatcttcct tcggcaagca
     6661 ctgcaaatgc ccatgccgca cgccgcgctg ggcgataacg tcatcggcaa aatgctgcac
     6721 gtcgcccata tcacctttca gcacggcgat ttccagacag tcgtcgtgat tgatatgcac
     6781 atgcagcgtg gcgacggaga gatcgtggtg atggtgctgg gtggagacaa tgcggctggc
     6841 taagtcgcgt ttttcgtgtt catacacata ggagagcacc gcgaaacctt gcgtgccgtg
     6901 ctgctgagtg gcctcctggg ccagggcgct acgcagaata tcgcggatag cttcggaacg
     6961 gttgttataa ccacgacgct ggctcaggct gtccagcgtc tccagtaaat cgtcatcaag
     7021 cgtgatggtg actcgttgca tttgcgttaa accttttctg tggcgcgacg gcgcacgggg
     7081 aatgcgggta ataccgcgtt ttgtagcaca cgtccggcgt cagaggaaaa ggttaattta
     7141 tctcccaccg cctgggtttc gacgatttgt ccgttgtcca tcaccatcac ccgctggcaa
     7201 aagcgttcta caagacgtaa gtcgtgggtg atgaacaggc aggcggtgcc aaactgttgt
     7261 tgcagctttt tcagcaggcg aatgacgccc gcctgtaaca cgagatcaag gttagaaacg
     7321 gtttcatcca gaatcagcaa tttcggttcg accgccagcg cgcgtgccag gcagacgcgc
     7381 tggagctggc cgccgcttaa ctgcggtggg cgtttgtcga gaacgctgtc atcgagatcg
     7441 accgccttca gcatttcgct ggcgcgcgcc agttgttcgg attttttcag tgatagcagg
     7501 tggcgcatcg gttcacgcag gatctcgcgc acggttttgc gcggattcac ggcactgatg
     7561 gagtcctgaa acaccatctg aatatcacgg cggaaggctt tacgttgggc gcgattaagt
     7621 ttcgccagcg attcgccgcg ccagctaata ttcccttgtg agggagactc taagcctacc
     7681 agcagccgcg cgagggtgct ttttccgcag ccgctgcgtc ccagcagggc gacggtttcg
     7741 ccgcttttca gggtcaggga aacgttattc agcaccgcct gatgttgatg ttttccgcta
     7801 aatccaccgt gggcatagtg atgggaaagg ccgctgacgt taagtaaggt catgatgcca
     7861 gctccatacc gtagagggcg agatgagcgg aaaccaggct gcgcgtcacc gtatgtttgg
     7921 gggcgttaaa cagcgtttct acatcgccct gttcgacaat tttaccttgt gacatcaccg
     7981 ccacgtcatc cgccagacgc gccacaacgc ccatatcatg ggtgaccagc agcattcccg
     8041 gcgcttgttt ttgcataatg ctttccagca gatcgaggat gcgcgcctgt gctaccacgt
     8101 cgaggtcggt ggtcggttca tcggcgatga taaacggtga ttcacacagc accgccatcg
     8161 caatcatcat gcgctgcaac atgccgccgc tcatctcgaa cgggtacagc ttcagcacgc
     8221 gcgcggcgtt ttccagcccc accgcttcta tggcagcggt aagcgtagcg tcatcggcgg
     8281 gtttccctaa cgccaggcag gtttcccgcg cgtgggtgtg catggtgtgt agcggattaa
     8341 aggcgctgcg cgggttctgc atgatggtgg caattttgat gccgcgcagg gcgcagggat
     8401 aaaccgcttt gccatcggct aaaatttccc ccgccgtctg gcgaacgcca gcgggcaaaa
     8461 tgcccagcgt cgcggcgcag gttaatgatt tcccgctgcc gctaccgccg actaacgcca
     8521 gcacgcgccc gcgttgcagg gttaacgata caccgtgtac cagcggctgc gcggcctgta
     8581 gcgcgatatt acgtagttca atctgttgcg gcattagtgt gcgtgctccg tcaccagatg
     8641 agggtccaga tgatcgcgca gtgcgtcacc caccaggtta aaggccatca cgctgataaa
     8701 cagcgccagc cccggccaga acatttgcag cggctgggtc cagatatact ggcgcgcgtc
     8761 gttaatcatc acgccccatt cggcggtcgg cgcggtcaca ccgaggccaa ggaaagacat
     8821 ccccgagacg tgcagcatca tatggccgat atccagcgtt gccagcacca gcagcgaagg
     8881 gatcaccgcg cctgccagat gatcgacaaa cactcgcaca tggcccgcac cggaaagccg
     8941 tgacgccagc acaaactcgc gttggcgtag tgaaatcacc aggctgcgca ccatgcgtgc
     9001 ataccacgcc cagtgcgaca gggcgatggc gataattacg ttggtcagcc cggtgccgag
     9061 cacgccaacc ataaagaacg acagaatcga ggtcgggaag gtcataaaca tatcggcgac
     9121 gcgcatggtg gcctgatcaa cgcgcccgcc aatcaacccg gcgctgccgc caataaccag
     9181 ccctaatgtc agcaccagca gcaggcaggc cattaccgaa ccgagcgaca cgcgggtcgc
     9241 tgccatcagc cgcgagaaaa tatcgcgacc taagtgatcg gtgcccagcc agtgctgcgc
     9301 atccggcgaa agcaggtgcg acggcaaatc aatcgcctgg gggtcatacg gcagccacca
     9361 ctggctggtg agcgcaatca gcgccagcag ggcgataatg atcagcgcca ggcgtaccga
     9421 ccagcgggaa gagaggaaaa agttcacgcg tgcgctcctt catgacgacg aatgcgcggg
     9481 tccagcgcgg cgttgagcaa atcgacaatc aaattacaga ccacaaaaac caccaccatc
     9541 atcagcgtaa agcactgaat caccggatag tcacggttaa aaatcgccga caccgcatag
     9601 cgcccgacgc caggccaggc aaagatgttt tcgataatca tcgtcccgcc aatcaattcg
     9661 ccaatgtgca tccccacggc ggtgatcatc ggcagcgagg cattgcgcag aatatggcgg
     9721 cgttcggtct gtttgtcatt caggccgcgt agccgcgccc aggtgacgtg acgctgaccg
     9781 gcgacgtcca gcatactggc gcgcagcagt cgcgcgttaa tcgccagcga cataaaggcg
     9841 atggaaaccg caggcaaaat gatgtgctgc cagccgccgt agcccatcgc gggtagccat
     9901 tgcagataca ccgaaaacgc catcactagc aaaaatgcca gccagaagtt gggcatcgac
     9961 acgccaagaa acgcgataaa gcgcacggcg aaatccggca aacgatcgcg gtggcgcgcc
    10021 gcccagatac cgagcggtac ggaagtgagc agaattaata ccagcgccgc acctgcaagt
    10081 tccagcgtgg cgggcaggaa gttcagcata tcgtccagca ccgggcgttg gctggcgaat
    10141 gagataccaa agtcaagatg cagcgccttc cacaaccagg tgccgtactg gacgtacagc
    10201 ggctgatcca gtccgagcat ggtgcgggta gaggccagca tctccggcgt cggcggcagg
    10261 ttagacagac gcaaataatc gagcgccggg tcgccggtac cgaggcgcag catcagaaaa
    10321 atgatcaccg aggcggcgag caccatcggg atcagcagca gaaagcggcg taatacgtaa
    10381 cgcaacatta aggtttcacc ggtttaatct gttcgaacgg aatttcggtg gcgatcggcg
    10441 cgtaggggat gttacccagc tccggttttg ataccaccat cattgagatg taactgatag
    10501 gcagataaac cgcctcgtca tgcagacggg tcagaatgtc gcgatacagt gcctgacgtt
    10561 gcgtttcgtc atgggtcgcc agcacttcgc cgatctcttt atcaatcagc ggtttgtcgg
    10621 ctaatccttg ctgtgcctgg aagtcagcgt gcgacggtac gcgcattgaa ctcaggaagg
    10681 cgtgtggatc gtatggcgcg ccccaggtgc ggtggaaaat catgccaaaa cgaccgtcgc
    10741 gctgacgagc atagatactg ctctcttctt cgccaatcag cgagacatct gcgccaatct
    10801 ggcgcatatc agcctgaatg atttccgcca tcgatttgct taacgcatcg gtgccgatga
    10861 acgacagttc aatgcgcagc ggctgaccat ttttctcgcg gatgtctttg cccgcaggca
    10921 gcgtccaacc ggctttttcc agcaacgctt tcgctttctg cggatcgtac tggcgcggtt
    10981 tcaggccgag gttggcgtag ggcacagaag gggcaaacag ggtgtcggcg acctgctggg
    11041 tgccatacaa cgcgttatca atcagcgatt ttttgtttac cgcgtaatta agagcttcac
    11101 gtactgccag ctcattggtg ggggttttgg cggtattaag cgccagcatc acggtttcga
    11161 tcggctgtga cagttgggta tggtaagccg ggttctggct aaagcgggcg aaggtatcga
    11221 gcggtaataa cccttcgttt ccgtacagca ggtcgatatc gccagtttca aacgccaccg
    11281 cgcgggtagt cgggtccggg atgacgttaa aggtgatctt tttaatcgct ggcttttcgc
    11341 cccagtagtt ttcgttacgg acgaagacat cgtactgatt cagtttcgat tcctgcaaaa
    11401 tccacggtcc ggtgccaatc ggcgctttaa ttccgttcat ggtttcatgg tttttaaact
    11461 gcgagggagc gataaaacgg aaaggacggg gcagggccag ttcttgcagg aaaggatagt
    11521 aggcgctttt cagggtaatt tgcagctctg ttttactgag tgctttaaca tcaacaatct
    11581 ggtttgccag ctccagccag gcgtgacgtt gacggttatc gagcactgcg cggaagtttt
    11641 ctgccgccgc ctcggcatcg aacggttcac cgttggataa tttcacgtca tcacgcaggg
    11701 tgaaggtcca ggttttacca tcttctgaat gagtccagct ttttgccagc cacgggatca
    11761 ccgaaccgtc tgcctgatat ttcaccaatg gttcataaac catgctctgg gcgaacatct
    11821 ggttaggcgt gtaaaggtgc gggtttagtg gcccgacatt caccggccag gcggtagtga
    11881 tttcatctgg tgcagcggca tggacgataa aagacgcaca agccagcagc gcaaatagag
    11941 tgcggcggag tgtggagagc atgataaccc caatggatta aaatagatgg cggaaataag
    12001 tatgacgatt ttaagtattc gtcatactga ttacctgttc tggatcaata gatgggcagt
    12061 cgggtgggcg gatcagttaa ctgaatcgat ccattgcaca ctgtcggcgg tgagcgtaaa
    12121 gggggtgggg gtgcagatcg caaggcttaa attttctagc tgacaatggc tgactgacag
    12181 cgaggagtga taggtgctat ctacgctgac gatttgccag gcgctgccgc cacgctgttt
    12241 aacgatggct tctttgcgcg tccagatgcg ccagaacatt tccagttgct gatcaggatg
    12301 cacggcgtcc atttcagcgt gttccccgag gctgaacacg gcgttcgcca gccagcgcca
    12361 gttggcgcgc gggcgaatca cttcgatatc gcagccgact tcgccttcat cgctcaacag
    12421 cagagcgata tcgtcaccgc tatggcttaa gttgaaccat agcggcgttt ccggcgcgaa
    12481 tgcaggtttg ccttgttcgc catagatgat ctccggtagc ggggaaagcg tgtgcgaaag
    12541 caatgcacgc cccgccagcc agcgttcgcg tcgtggacct tgcggtgctt gctcgcgtaa
    12601 acccggtggc agtggagctg cgcttaaggt cgaaactttc cccagaacta tccgatacat
    12661 atcagggcca acgtttaatg gaaaatgaaa gtgcgtatcg tatcacttgt cgcctcatcc
    12721 cggtaaccga cttttcggtc tgcctagccc cagtaaaatc gccagtttgc taccgccttt
    12781 ggtggtttcc atccagattt tacacacgct ggttaatggc accgaaagta gcatccctac
    12841 cgggccgagc agccatcccc aaattaacaa tgaaagaaat accaccatgg tggacatccc
    12901 caggcgatgg cccatcatcc gtggtcgatg accatatgga ccactaaaaa caatgcgccg
    12961 accagaatac atgcgtaaac accattaaac agcagcacct gaatcattgg cggtacggcg
    13021 gaaattaccg cgccgatatt gggcacgtag ttgagcaaaa acgccagtac tgcccacatc
    13081 agcgcaaact gtacgcccat tagcgccagc cccagccaga cgatgacacc tgtccataaa
    13141 ctgagtagcg tctttaacgc cagataatgc gaaacgcctt taagtgcgcg gtgtaatcct
    13201 gcgatgtgaa tctgtgggtt attcagcgca aaacgcattt tgtaagggac gtggcgcact
    13261 tcaaacagca taaaaactac ggtcatcacc agcaaaagca cgctcgccat tgccccggaa
    13321 agcccgatca ttagcgctgt ggtgaaggta accacttttt ccgagtccat ccgctgcagc
    13381 attcgctccg gcgacatatg caaattaaga aaaggcaaca tctcctgcaa tttaaaaagt
    13441 ttgcgcgtca gctccttatt aaacttcggc agcatagaga taaattcgtt aaacgatgcc
    13501 gccagtacgc cgactagcgc ggttagtgcg atcagcatca ccaccactac aatcgtaatg
    13561 gtaacggggc gttgtactcc ccgacgaata aaccaggtaa cgagcgggtt gaggacgatg
    13621 gcaaaaaaca gcgccagtaa cagctgcaca atgatatctg ccgctgcgtg aatgcccgcg
    13681 aggatcacta ccagcgaggc caacttgagc agaatgtgca tgcccgtttt atcgggttga
    13741 ggggtttcca ttggggcttc cttgtgactt tttgtgttaa gtgtagcggg agtcacgtca
    13801 gcaatattct gattcttact gctgattttc acgtcagcac gtggtaaaaa tgaaacactg
    13861 ttgtaaaaat gtggtgatcc tcatgcccga acccgtagcc gaacccgcgc taaacggatt
    13921 gcgcctgaat ttgcgcattg tctccattgt catgtttaac ttcgccagct acctcaccat
    13981 cgggttgccg ctcgctgtat taccgggcta tgtccatgat gtgatgggct ttagcgcttt
    14041 ctgggcagga ttggttatca gcctgcaata tttcgccacc ttgctgagcc gtcctcatgc
    14101 cggacgttac gccgatttgc tgggccccaa aaagattgtc gtcttcggtt tatgcggctg
    14161 ctttttgagc ggtctgggat atctgacggc aggattaacc gccagtctgc ccgtcatcag
    14221 cctgttatta ctttgcctgg gacgcgtgat ccttgggatt gggcaaagtt ttgccggaac
    14281 gggatcgacc ctgtggggcg ttggcgtggt tggctcgctg catatcgggc gagtgatttc
    14341 gtggaacggc attgtcactt acggggcgat ggcgatgggt gcgccgttag gcgtcgtgtt
    14401 ttatcactgg ggcggcttgc aggcgttagc gttaatcatt atgggcgtgg cgctggtggc
    14461 cattttgttg gcgatcccgc gtccgacggt aaaagccagt aaaggcaaac cgctgccgtt
    14521 tcgcgcggtg cttgggcgcg tctggctgta cggtatggca ctggcactgg cttctgccgg
    14581 atttggcgtc atcgccacct ttatcacgct gttttatgac gctaaaagtt gggacggtgc
    14641 ggctttcgcg ctgacgctgt ttagctgtgc gtttgtcggt acgcgtttgt tattccctaa
    14701 cggcattaac cgtatcggcg gcttaaacgt agcgatgatt tgctttagcg ttgagataat
    14761 cggcctgcta ctggttggcg tggcgactat gccgtggatg gcgaaaatcg gcgtcttact
    14821 ggcgggggca gggttttcgc tggtgttccc ggcattaggt gtagtggcgg taaaagcggt
    14881 tccgcagcaa aatcaggggg cggcgctggc aacttacacc gtatttatgg atttatcgct
    14941 tggcgtgacc ggaccactgg ctgggctggt gatgagctgg gcgggcgtac cggtgattta
    15001 tctggcggcg gcgggactgg tcgcaatcgc gttattactg acgtggcgat taaaaaaacg
    15061 gcctccggaa cacgtccctg aggccgcctc atcatcttaa aacttactga ataaccagcg
    15121 tattaatgat gttttctgcg gtggtctgcg ctttttgctg atcgtcagcg ggcagcgtaa
    15181 tttgcatggt cagcagttga ttacccacgt tacccagaat aacggaagag tacgccgtct
    15241 ggcctttcgc ggagataata ctgtctaact gctgcatttt gtgacctttc agctcaatgg
    15301 ctttattggt taccacttgc agctgcggat cgcggctacg ttgctgatct tccagacgct
    15361 tcgccagcac cgccagatct tctttcggat catcgcccat gatgacgatg actgctttct
    15421 gcccggtggc gtcggaccag acatgcatgt tattggcctg cgttcccagc ttaccgctct
    15481 ggtcggtcat atccgctggc agcgagaaac ttaacttgcc atcaagcagg ttgacgggat
    15541 tcccggtagc gttattttcc gcgaccgaac cctgcgccgt agcgttagtg tctttatcat
    15601 cacaggccgc aagccccata accagcaggc caattccgac atatttaacc agattgcgca
    15661 ttgacttctt cctttcgata aacggccata acggctcatt catccatctt atcacaactc
    15721 tgataacgaa cctttaactc gcctgcaaag cgttgatttc ggatttatct gccagtcttt
    15781 tcaacagcat attgagtaat acgccataca ttggcaggaa gaaaacgata ctgattaaca
    15841 ctttgaaaca gtaatcgacc agcgcgattt ccatccagtg ttcagccata aaggcatccg
    15901 ggctacgcca gaaggcaatg aagaaaaagg ccagcgtgtc gctgacgtta ccgaacagtg
    15961 tggacgctgt cggtgccagc caccagcggc gactctgacg caggcggtta aaaacgtgca
    16021 cgtcgaggat ctgtcccagc gcgtaggcca tgaaactggc ggtggcgata cgggcgacaa
    16081 acaggttgaa gtgggcgagt gcgccgaatc cctgccagga acccatatag aatagcgacg
    16141 agatgacgta ggagatcagc aacgccggga tcatcaccgc aaagatgata cgacgggcca
    16201 gcggtgcgcc aaaaatacgc acggtcaggt cggtagcaag gaaaataaac gggaagctaa
    16261 acgcgcccca ggtggtatgg aaacccaaaa tggagacggg aagctgaacc agatagttac
    16321 tggaggtgat caccagcaga tgaaataacg ataaccagaa caacgcctta tagcgttgag
    16381 tttgcgagaa aacgttcata ttgtaccttt ttgattaacc attggggtga gggaacccaa
    16441 tacgtacgac acgtctgtta ccttaacata ataacgtgct tacccttttt tcgagccgcc
    16501 gcatgatact gctttacgtt gacaatgcaa tggttaattt tcacgcaatc gttaacctgg
    16561 tttgcttacg gactcacagg gcgtaaacta gcgccgtttt tttatgtgat gagaagaaaa
    16621 tgaccgatct cttttccagc cctgaccaca cactcgacgc acttggcctg cgctgcccgg
    16681 aacccgtaat gatggtgcgc aaaactgtgc gcaatatgca gcccggcgaa acgttgctga
    16741 ttatcgccga cgatccggcc actacccgcg atattcctgg gttttgtacc tttatggaac
    16801 acgaactggt tgcgaaagag acggatggac tgccttatcg ttatttgatt cgtaaaggcg
    16861 gttgatgggg gctgattggc ttcgatgccg ccttttcccc tcaccctaac cctctcccca
    16921 gaggggcgag gggaccgatc gcgctcaatg ttgcgatcgg tttgccttat ctcctgcgca
    16981 acaatcttaa cgcattcgct gtcaccagca ccgtcgcacc cgtatctgcc agcaccgcca
    17041 gccatagtcc ggtcatccct aaaagcgtgg tgacgaggaa gatccctttc agtcccagcg
    17101 caatggtgat gttctggcgg atattggcgt gagtggcgcg tgccagttca atcatttgca
    17161 ccaggccgcg caggtggtta tgggttaatg ctgcatcagc ggtttccagc gccacgtctg
    17221 tgccactgcc cattgcaatc ccaatggcgg cagctttcat cgctggcgcg tcgttaatac
    17281 cgtcaccgac catcgccagc ggcgcatgtt gattcagctc ggtcaccgct ttgactttat
    17341 attccggcaa caggcccgct ttaaactcca gccccagctc cccggcaatt gccgccgctg
    17401 cgcgtggatt atcgccggtg aggatcaccc ctttgacgcc cagcgcgttc agttcactga
    17461 tggcagttgc agcatcggcg cgcagggtat cctgcaatgc aatgataccc agcacgtcat
    17521 cattacgtac taccagcaca accgtttgcc cggcgctttc cagttcatta atcaaaccag
    17581 caaatgcatc agcgggatgt ttcccggcag cgcatatcaa cacgcgctca ccgttaacct
    17641 gcgcttcaat gccagacccg accagcgccc gctgtgattc ggcggcggga atggcgagtg
    17701 cagcaacctg tgcttcgcgc acgatggcct gcgccagtgg atgcgtcgcg ctttgctcga
    17761 ccgccgccgc cagtgtcagc agttcagatt cactaatacc cgttgccgga tgaatcgcgg
    17821 taacgcgcgg tttaccgacg gtcagcgtac cggttttatc aaacgccacc tgagtaacac
    17881 gacctagttg ttccagcgcc gctccgcctt taatcaacgc cccacgacgc gctgctgccg
    17941 ccagcccgga ggtaatcgcc gcgggcgtgg agataactaa cgcacacggg cagccaatca
    18001 gcagcagcgt caggccttta taaatccact cctgccagct ggcggcaaac agcagcggtg
    18061 gcaccagcgt caccagcagg gcgacggcca taatcgctgg cgtataaata cggctgaaac
    18121 ggtcgataaa ccgctcaatg ggggcgcggc gctcttcggc ttcttcgatc agtttcagaa
    18181 tccggtcaat ggcgctggca cccggttctg acagcacttc cagcgttacc agacggtcta
    18241 cgctggtggc tcctgcagga actttatcgc ccgtcgcgcg ctccaccgga atggattctc
    18301 cggtcagggc gctttcatca aaactggcaa acggtgagag cagtttaccg tcggcaggca
    18361 aacgcccacc tgcggcgact tcaatcacat cgccaggccg caggctgtta atcgccacct
    18421 cttcccgctc accgttacgc aggcgcgtgg cggtttctgg tttcagcgcc attaacgcgc
    18481 taacgccctg acgcgcgcgg ctggcggccc agccttccag tcgttcacca atcaaaaaca
    18541 gcagcaacac catcgcagct tcagccgttg cgccaataaa cagtgcacca atagcggcta
    18601 cgctcattaa ggtttcaatg gcgaagtagc tgccggattt gatcagccgt aatgcctgat
    18661 gagcaatcgg gtacagccca accagcgtgg tcgcgataaa cgccagttgc ccgaacggat
    18721 gattgaactg ctccagaccc cagctgattg ccatcatcac gattagtgta atcagcggca
    18781 gattctcttt caggcgcgat gcttgtggct cgtcggcggc ctgctcatcg cgcagggaat
    18841 agcccgcttt ttgcaccgca gattcaactt gtgcacgaat gtcattgtcg gcatcaacca
    18901 ccagtttttc ggtggcgaac aacacctgca cctgattcac acctgcaagc tggcgcacgg
    18961 cattttctac cttgcgcgca caggcggcgc agtccatgcc actgactttc cagctatagc
    19021 gggtgccgga gacgttttca gagagcgttg gcgagctgga gcatgcgccg tcgcagcaac
    19081 agtcgttggc gttctgtacc gtggttagcg gtttgaacgc agcaaattga ggggctttct
    19141 tgccgtgatt gtcaggtgtc gacatggcat actccggtta agttttttct cattaaccga
    19201 aggatacact ctggagtcga ctctagagtc aagttttatc agaaatacag tgagcggacg
    19261 atgaggaagt gaccggcaaa gtagcaggcc gcagcaatcg cgttatccgc acggaagcgt
    19321 cggcgatagt ggctccccag ccagacaaag ttactgataa acagcaacga agcgccaaca
    19381 aacgcagaga gcgccggagc ggtcggacgg aagaaccaca gttcacctgc cagccacacc
    19441 atcaccagcg tcatgccgat aaacgtgcag ataggccaac gatactcttc cagccgcgtc
    19501 cagataatcg ccagtaacag cgcacccaga accagcaaca ccagtggcag aggccagaag
    19561 aaagagagcg tcatctgact ggcgaaatag atggtgtaca gcaggtgcga gaggaaaaac
    19621 gcgccgatgg cgtacatcag acgttgacgt ggcaacaggg ttagcgcatc gcccagcagt
    19681 gaggcgcaca gccctgccag caccagatag ctaatggcgt cgaacatcgg cgcttgccag
    19741 gccagtaaca gcaggagaag aagggttaac ggtttaaaca cccagcgttg ccaggttggc
    19801 ccacgatacg atgcatccac agatagccat gcggaaagac agacagcgat aaacgaccaa
    19861 agcatcttag ttccttgaat tcgttatttt ttcgtaagcg gaatgcctac ggtcttgctt
    19921 ccagtttagt ggcgagggtg gacggatgac aacaccataa ctagcagggt atgcttattt
    19981 ccgcattttc cgatgaggga taaagatgag caaaccacct cttttcttta ttgttatcat
    20041 tggcttaatt gtcgtcgccg catcgtttcg ttttatgcaa cagcgacggg aaaaagctga
    20101 taatgatatg gctccgctcc agcaaaagct ggtggtggtg agcaacaagc gggaaaaacc
    20161 gattaacgat cgccgttcgc gccagcagga agtgactccg gcaggcacca gtatgcgcta
    20221 tgaggcaagc ttcaaaccgc aaagcggagg aatggagcag acgtttcgcc tcgacgccca
    20281 gcagtaccat gccctgacag tgggcgataa aggtacgctg agctataaag gaacgcgctt
    20341 tgttagcttt gttggcgaac aataaggtta ttttttaact ttaaatttct tctgccagac
    20401 cagcagttca aacacgccga aaaggaaaat ccgcaccttt tcggcggtgg tcatctgcgg
    20461 gccatctttc ggtaaagtgg atttcaatag cgccagctgc ataccatgca tcagcacggt
    20521 aaaaatcagc gccacgttaa cgaaaatatt cagcgggcgc gggaagggat gcaccagatt
    20581 gaggattaaa aatccccaaa cgcagagcat taacaaacga ccaatattaa tcagcatcac
    20641 tttctccttg tgcttcgcgt tgatacagcc gataagccac ctgacccgcc actttttccc
    20701 gatgtaatga ccagtttgcc ggaacagtgg gcagaccgtt ttcgacttcg ctttcgacat
    20761 aaatcagggc ttcgtcagcc agccagccgt tatcttccag taaatttatc gtctcttcta
    20821 acaagccacg gcggaacggt ggatcgacaa acacgatatt atgcggtgta cctttttgcg
    20881 ccaggaatga catcgcgttg ctgttcacca cgcgtgcatt gcctgctttt agtgtcgcca
    20941 gattcttaat taactgctga gaaaccgcgc gatccatctc aatcaacgtg gcccccgcag
    21001 cgtagcgcga taacgcttcc agtcccagcg cgccgctccc ggcgaagcaa tccagacatt
    21061 gggcgtcaac aatgaccgga gccagccagt taaacaatgt ttcgcgtacg cggtcggtgg
    21121 tggggcgcag acctgggcta tcaggaaccg ggagtttacg gcctcgccac tgcccgccaa
    21181 taatgcggat ttggccgctg ccggaatgat tcggtttttt catgataaat tgctcaatcc
    21241 gccagataac acatacttgc aggcggtgat gtgaattaag ttaagtgata gactatttca
    21301 tcattttttt agctgctatg tacatagcgt taacgctgtg ccatgaagca acagcgagga
    21361 gtgtagtcgc aaatggcgaa agaaaaaaaa cgtggctttt tttcctggct gggctttggt
    21421 caaaaagagc agaccccgga aaaagagaca gaagttcaga atgaacaacc ggttgtagaa
    21481 gaaatcgttc aggcgcaaga gcctgcgaag gcttctgaac aagccgtcga agagcaaccg
    21541 caggcgcata ctgaagccga ggcggaaact tttgctgccg acgttgtgga agtcactgaa
    21601 caggttgctg aaagtgaaaa agcgcagcct gaagcggaag tcgttgcaca gccggaaccg
    21661 gtcgtagaag aaacgccgga gccagtggct atcgaacgtg aagagctgcc gttgccggaa
    21721 gacgtcaacg ccgaagaggt ttcgccagaa gagtggcagg ctgaagcgga aaccgtagag
    21781 attgtcgaag cggcggaaga agaagcggct aaagaagaaa tcaccgacga agagctggaa
    21841 gcacaggcgc tggctgccga agcggcagaa gaggcggtga tggtggttcc tccggtagaa
    21901 gagcagccgg tggaagaaat cgctcaggag caggaaaaac cgaccaaaga aggtttcttc
    21961 gcgcgcctga aacgcagcct gttaaaaacc aaagaaaatc tcggttccgg atttatcagc
    22021 ctgttccgcg gtaaaaaaat cgacgatgat ctgtttgagg agctggaaga acagctgttg
    22081 atcgccgatg tgggcgtgga aaccacacgt aaaattatca ccaatctgac ggaaggcgca
    22141 tcccgcaagc agcttcgtga tgccgaggcg ctctatggcc tgctgaaaga agagatgggc
    22201 gagattctgg cgaaagtcga tgagccgctg aatgttgaag gtaaaacgcc gttcgtgatc
    22261 ctgatggtgg gcgtcaacgg tgtgggtaaa actacgacga ttggtaagct ggcacgtcag
    22321 tttgagctgc agggtaaatc ggtgatgctg gcggcgggcg atactttccg tgcagcagcg
    22381 gttgaacagc ttcaggtctg gggtcagcgc aacaatattc cggtgattgc ccagcatacc
    22441 ggtgcggatt ccgcctctgt tatcttcgac gccattcagg cagctaaagc gcgtaatatc
    22501 gacgtcctga ttgccgatac cgccggacgc ctgcagaaca aatcgcacct gatggaagag
    22561 ttgaagaaaa tcgtccgcgt gatgaagaaa ctcgacgttg aagcgccgca tgaagttatg
    22621 ctgactattg atgccagtac cgggcagaat gcggtaagcc aggccaaact gttccacgaa
    22681 gccgttggct taaccggcat cacgctaacg aaactggacg gcacggcgaa aggcggggta
    22741 attttctcgg tggctgacca gtttggtatc cctatccgct acattggtgt cggcgaacgt
    22801 attgaggatt tgcgtccgtt taaggcggac gactttatag aggcactttt tgcccgagag
    22861 gattaacaat gattcgcttt gaacatgtca gcaaggctta tctcggtggg agacaggcgc
    22921 tgcagggcgt tacgttccat atgcagccgg gtgagatggc gtttctgacc ggtcattccg
    22981 gcgcagggaa aagtaccctc ctgaagctga tctgtgggat tgagcggccc agcgccggga
    23041 aaatctggtt tagcggccat gacatcacgc gtctgaaaaa ccgtgaagtt ccgtttctgc
    23101 gccgccagat tggcatgatt ttccaggatc accatctact gatggaccgt actgtctacg
    23161 ataacgtggc gatcccgctg attatcgctg gtgccagcgg tgacgatatt cgtcgccggg
    23221 tgtcggcggc actggataaa gtcgggctac tggacaaagc gaagaacttc cctattcagc
    23281 tttccggcgg tgaacaacag cgtgttggca ttgcccgcgc ggtggtgaat aagcccgcgg
    23341 tactgctggc ggacgaaccg accggtaacc tggacgacgc gttgtcggaa gggattctac
    23401 gtctgtttga agagtttaac cgcgttgggg taaccgtatt gatggcaacg cacgacatca
    23461 acctgatttc acggcgttcc tatcgcatgc tcaccctgag cgatggtcac ttgcatggag
    23521 gcgtgggcca tgaataagcg cgatgcaatc aatcatattc ggcagtttgg tgggcgtctg
    23581 gatcgcttcc gtaaatcggt cggcggctca ggcgacggcg gtcgtaacgc accgaaacgc
    23641 gcgaaatcct cgccaaaacc ggtaaatcgc aaaaccaacg ttttcaacga acaggtgcgc
    23701 tatgccttcc acggcgcatt gcaggatctg aaaagcaaac cgttcgccac gtttttaacg
    23761 gtgatggtta tcgccatctc cctgacgctg cccagcgtct gttatatggt gtacaaaaac
    23821 gttaatcagg cggcgacgca gtattatccg tcaccgcaaa tcactgttta cttgcaaaaa
    23881 acgctggacg atgacgccgc tgcgggcgtg gtggcacagt tgcaggccga gcaaggcgtg
    23941 gagaaagtga actatctttc tcgtgaagac gcactgggcg agttccgtaa ctggtctggt
    24001 tttggtggtg cgctggatat gctggaagaa aacccgcttc cggcagtggc ggtggtgatc
    24061 ccgaaactcg attttcaggg gacggaatca ctcaatacgc tgcgtgatcg tatcacgcag
    24121 attaacggca ttgacgaagt gcggatggat gacagctggt ttgcccgtct ggcggcgttg
    24181 accgggctgg tcgggcgcgt ttcggcgatg atcggcgtgt tgatggtggc ggcagtgttc
    24241 ctcgtcatcg gcaacagcgt acgtctgagc atctttgctc gccgtgactc catcaacgtg
    24301 cagaaactga ttggtgcgac ggatggtttc atccttcgcc cgttcctgta tggtggcgca
    24361 ctgctgggat tttctggcgc attgttgtca ttaattttgt cagaaattct ggtgctgcga
    24421 ttgtcatcgg cggttgcgga agtggcacag gttttcggaa cgaattttga tatcaatggt
    24481 ttatcgttcg atgaatgcct gctattgctg ctggtatgct cgatgattgg ctgggtggca
    24541 gcgtggcttg ccacggtaca acatttacgc cactttacgc ctgaataata aaagcgtgtt
    24601 atactctttc cctgcaatgg gttccgtagc agggaaagag atcccgttgt ctcttcccgg
    24661 tatttcatct ctatgtcaca ttttgtgcgt aatttattca caagcttgca ttgaacttgt
    24721 ggataaaatc acggtctgat aaaacagtga atgataacct cgttgctctt aagctctggc
    24781 acagttgttg ctaccactga agcgccagaa gatatcgatt gagaggattt gaatgactga
    24841 caaaatgcaa agtttagctt tagccccagt tggcaacctg gattcctaca tccgggcagc
    24901 taacgcgtgg ccgatgttgt cggctgacga ggagcgggcg ctggctgaaa agctgcatta
    24961 ccatggcgat ctggaagcag ctaaaacgct gatcctgtct cacctgcggt ttgttgttca
    25021 tattgctcgt aattatgcgg gctatggcct gccacaggcg gatttgattc aggaaggtaa
    25081 catcggcctg atgaaagcag tgcgccgttt caacccggaa gtgggtgtgc gcctggtctc
    25141 cttcgccgtt cactggatca aagcagagat ccacgaatac gttctgcgta actggcgtat
    25201 cgtcaaagtt gcgaccacca aagcgcagcg caaactgttc ttcaacctgc gtaaaactaa
    25261 gcagcgtcta ggctggttta accaggatga agtcgaaatg gtggcccgtg aactgggcgt
    25321 aaccagcaaa gacgttcgtg agatggaatc acgtatggcg gcacaggaca tgacctttga
    25381 tctgtcttcc gacgacgatt ccgacagcca gccgatggca ccggtgctct atctgcagga
    25441 taaatcatct aactttgccg acggcatcga agatgataac tgggaagagc aggcggcaaa
    25501 ccgtctgacc gacgcgatgc aaggtctgga cgaacgcagc caggacatca tccgcgcgcg
    25561 ctggctggac gaagacaaca agtccacgtt gcaggaactg gctgaccgtt acggtgtttc
    25621 cgctgaacgt gtacgccagc tggaaaagaa cgcgatgaaa aaactgcgcg ctgctataga
    25681 agcgtaattt ccgctattaa gcagagaacc ctggatgaga gtccggggtt tttgtttttt
    25741 gggcctctac aataatcaat tccccctccg gcaaaacgtc aatccccacg cagattgtta
    25801 ataaactgtc aaaatagcta ttccaatatc ataaaaatgg ggtatgtttt agcagagtat
    25861 gctgctaaag cacgggtagt catgcataaa acgaaataaa gtgctaaatc acaacaccac
    25921 aacacacgta ataaccagaa gaatggggat tctcaggatg aatataaagg gtaaagcgtt
    25981 actggcagga tgtatcgcgc tggcattcag caatatggct ctggcagaag atattaaagt
    26041 cgcggtcgtg ggcgcaatgt ccggtccggt tgcgcagtac ggtgaccagg agtttaccgg
    26101 cgcagagcag gcggttgcgg atatcaacgc taaaggcggc attaaaggca acaaactgca
    26161 aatcgtaaaa tatgacgatg cctgtgaccc gaaacaggcg gttgcggtgg cgaacaaagt
    26221 cgttaacgac ggcattaaat atgtgattgg tcacctctgt tcttcatcaa cgcagcctgc
    26281 gtctgatatc tacgaagacg aaggcatttt aatgatcacc ccagcggcaa ccgcgccgga
    26341 gctgaccgcc cgtggctatc agctgatcct gcgcaccacc ggcctggact ccgaccaggg
    26401 gccgacggcg gcgaaatata ttcttgagaa agtgaaaccg cagcgtattg ctatcgttca
    26461 cgacaaacag caatacggcg aaggtctggc gcgagcggtg caggacggcc tgaagaaagg
    26521 caatgctaac gtggtgttct ttgatggtat caccgccggg gaaaaagatt tctcaacgct
    26581 ggtggcgcgt ctgaaaaaag agaatatcga cttcgtttac tacggcggtt atcacccgga
    26641 aatggggcaa atcctgcgtc aggcacgcgc ggcagggctg aaaactcagt ttatggggcc
    26701 ggaaggtgtg gctaacgttt cgctgtctaa cattgcgggc gaatcagcgg aagggctgct
    26761 ggtgaccaag ccgaagaact acgatcaggt tccggcgaac aaacccattg ttgacgccat
    26821 caaagcgaaa aaacaggacc caagcggcgc attcgtttgg accacctacg ccgcgctgca
    26881 atctttgcag gcgggcctga atcagtctga cgatccggct gagatcgcca aatacctgaa
    26941 agcgaactcc gtggataccg tgatgggtcc gctgacgtgg gatgagaaag gtgatctgaa
    27001 aggctttgag ttcggcgtat ttgactggca cgccaacggc acggcgaccg atgcgaagta
    27061 atcattaatc ggcaactttg ggttgccgcc aaattgctaa tatcgagtac gttgcttcat
    27121 gccggatgcg gcgtaaacgc cttatccggc ctacaagatc caaagaaatc agtaaattgc
    27181 aacacacatt gtaggcctga taagcgtagc gcatcaggca atttctcgtt ggtcatcact
    27241 tttgaaatca acttgacgat taacgcttct cccagccgcc ctgttgcgcc gtaaatccca
    27301 gtgcctgcat aaacgccgtc atcacaccgc gatcttccac gcctgcatcc gccatccacc
    27361 agcatgaaac gccaggattg ttacgcaaaa cctcttccag cagatattgc cccacaccgc
    27421 gacgtcgggt gacttcccgc acacgcaggg aatccagtgc tccctcggtg ccgcttaagg
    27481 ttacccgtac ggcagcgagc aggcgctcgt taaaacgcgc ggcgtagata cggtggttat
    27541 cgtcaacctg taaagaggaa ggggaatact ccggccagat cttttgcagg tcaatccggt
    27601 cctggtcgct aaagttttct aatcgaatga tggtcagctt catgggtaac ccgtgtaaat
    27661 cacaaaagtg gaaccagtgt agcgaaataa tttaatcgga ggctttctct tttttatttc
    27721 ttttggcagg tgattaattt tttaacagca ataattacaa agttaaaaca ttagagaatg
    27781 aaaaataccc agcataatcc cctgaatggt agtgaattat tccgcccttt gtgccgttat
    27841 tttatgctga
//
LOCUS       DAJVUP010000037        27620 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.037, whole genome shotgun sequence.
ACCESSION   DAJVUP010000037 DAJVUP010000000
VERSION     DAJVUP010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27620
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.037"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(174..704)
                     /gene="ppa"
                     /locus_tag="OQQ75_001482"
     CDS             complement(174..704)
                     /gene="ppa"
                     /locus_tag="OQQ75_001482"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001739810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HCS1975859.1"
                     /translation="MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDR
                     FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGE
                     DAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAE
                     AAKAEIVASFERAKNK"
     gene            1014..1970
                     /gene="ytfQ"
                     /locus_tag="OQQ75_001483"
     CDS             1014..1970
                     /gene="ytfQ"
                     /locus_tag="OQQ75_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactofuranose ABC transporter
                     substrate-binding protein YtfQ"
                     /protein_id="HCS1975860.1"
                     /translation="MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV
                     AKSEAEKRGITLKIADGQQKQENRIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD
                     AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG
                     ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA
                     HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPA
                     FDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMGY"
     gene            2110..3612
                     /locus_tag="OQQ75_001484"
                     /pseudo
     CDS             2110..3612
                     /locus_tag="OQQ75_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026286.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
     gene            3626..4648
                     /locus_tag="OQQ75_001485"
     CDS             3626..4648
                     /locus_tag="OQQ75_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313234.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1975861.1"
                     /translation="MPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQV
                     VLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVA
                     EVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVT
                     FNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAG
                     VNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMG
                     GRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGV
                     RSRDKT"
     gene            4635..5630
                     /gene="yjfF"
                     /locus_tag="OQQ75_001486"
     CDS             4635..5630
                     /gene="yjfF"
                     /locus_tag="OQQ75_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease YjfF"
                     /protein_id="HCS1975862.1"
                     /translation="MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAF
                     LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFG
                     AFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
                     RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLST
                     GLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQG
                     LIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQR"
     gene            complement(5663..6661)
                     /gene="fbp"
                     /locus_tag="OQQ75_001487"
     CDS             complement(5663..6661)
                     /gene="fbp"
                     /locus_tag="OQQ75_001487"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HCS1975863.1"
                     /translation="MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAG
                     LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH
                     AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV
                     YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK
                     KYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYEC
                     NPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA"
     gene            6837..8210
                     /gene="mpl"
                     /locus_tag="OQQ75_001488"
     CDS             6837..8210
                     /gene="mpl"
                     /locus_tag="OQQ75_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HCS1975864.1"
                     /translation="MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEK
                     QGIELIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRD
                     RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEAD
                     EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII
                     WPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV
                     GEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRGEANGVTVYDDFAHHP
                     TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHI
                     PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
                     KKAEAAQ"
     gene            complement(8293..8844)
                     /locus_tag="OQQ75_001489"
     CDS             complement(8293..8844)
                     /locus_tag="OQQ75_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HCS1975865.1"
                     /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA
                     EIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD
                     KLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKE
                     GNKPPKSARQIFQYLRELAENEE"
     gene            8938..10290
                     /gene="pmbA"
                     /locus_tag="OQQ75_001490"
     CDS             8938..10290
                     /gene="pmbA"
                     /locus_tag="OQQ75_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HCS1975866.1"
                     /translation="MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT
                     GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY
                     TSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEG
                     GSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQT
                     PEWVGVDCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFL
                     LDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSA
                     RKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGA
                     AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
                     "
     gene            10474..10860
                     /gene="cybC"
                     /locus_tag="OQQ75_001491"
     CDS             10474..10860
                     /gene="cybC"
                     /locus_tag="OQQ75_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313240.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b562"
                     /protein_id="HCS1975867.1"
                     /translation="MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDNLKVVEKADN
                     AAQVKDALTKMRAAALDAQKATPPKLEGKSPDSPEMKDFRHGFDILVGQIDDALKLAN
                     EGKVKEAQAAAEQLKTTRNAYHQKYR"
     gene            complement(10905..11369)
                     /gene="nrdG"
                     /locus_tag="OQQ75_001492"
     CDS             complement(10905..11369)
                     /gene="nrdG"
                     /locus_tag="OQQ75_001492"
                     /EC_number="1.97.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate
                     reductase-activating protein"
                     /protein_id="HCS1975868.1"
                     /translation="MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSG
                     QPFTKAMEDQIINDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIW
                     VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR"
     gene            complement(11559..13697)
                     /gene="nrdD"
                     /locus_tag="OQQ75_001493"
     CDS             complement(11559..13697)
                     /gene="nrdD"
                     /locus_tag="OQQ75_001493"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HCS1975869.1"
                     /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAA
                     VVSEQMQGRNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEI
                     RGLVEQTNASLLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH
                     YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH
                     IYGGTTINRIDEVLAPFVTASYNKHRKTAEEWNIPDAEGYANSRTIKECYDAFQSLEY
                     EVNTLHTANGQTPFVTFGFGLGTSWESRLIQESILRNRIAGLGKNRKTAVFPKLVFAI
                     RDGLNHKKGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE
                     NENGEQIHDGRNNLGVISLNLPRIALEAKGDEATFWKLLDERLVLARKALMTRIARLE
                     GVKARVAPILYMEGACGVRLNADDDVSEIFKNGRASISLGYIGIHETINALFGGEHVY
                     DNEQLRAKGIAIVERLRQAVDQWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG
                     VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYSNIQHNLKALEDV
                     WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGY
                     LGSPDARPFNAGKQEEVKRRVKHLGNGQIG"
     gene            complement(14091..15746)
                     /gene="treC"
                     /locus_tag="OQQ75_001494"
     CDS             complement(14091..15746)
                     /gene="treC"
                     /locus_tag="OQQ75_001494"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HCS1975870.1"
                     /translation="MTNPPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHK
                     LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMV
                     FNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY
                     LHLFAPEQADLNWENPAVRAVLKKVCEFWADRGVDGLRLDVVNLISKDPRFPDDLDGD
                     GRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN
                     FHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFG
                     DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR
                     NDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALA
                     DDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSRE
                     IQPWQPGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK"
     gene            complement(15796..17217)
                     /gene="treB"
                     /locus_tag="OQQ75_001495"
     CDS             complement(15796..17217)
                     /gene="treB"
                     /locus_tag="OQQ75_001495"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS trehalose transporter subunit IIBC"
                     /protein_id="HCS1975871.1"
                     /translation="MMSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANAR
                     PKEIEQLPMVKGCFTNARQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMK
                     WHEQLITHFAETFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFL
                     WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDF
                     GMFSIAKVGYQAQVIPALLAGLALGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHA
                     LIGPFGRMIGDGVAFAVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQ
                     SMGGTPVWPLIALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGIN
                     LKYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPNYWQVFALAMAIAI
                     IIPIVLTSFIYQRKYRLGTLDIV"
     gene            complement(17318..18283)
                     /gene="treR"
                     /locus_tag="OQQ75_001496"
     CDS             complement(17318..18283)
                     /gene="treR"
                     /locus_tag="OQQ75_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001181347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator TreR"
                     /protein_id="HCS1975872.1"
                     /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMN
                     QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPEFYEQGYDPIMMESQF
                     SPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDE
                     GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAM
                     KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPE
                     IVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLSRSFPER"
     gene            18468..18521
                     /gene="mgtL"
                     /locus_tag="OQQ75_001497"
     CDS             18468..18521
                     /gene="mgtL"
                     /locus_tag="OQQ75_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_003933616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mgtA regulatory leader peptide MgtL"
                     /protein_id="HCS1975873.1"
                     /translation="MEPDPTPLPRRRLKLFR"
     gene            18662..21358
                     /gene="mgtA"
                     /locus_tag="OQQ75_001498"
     CDS             18662..21358
                     /gene="mgtA"
                     /locus_tag="OQQ75_001498"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HCS1975874.1"
                     /translation="MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLK
                     MAVMPEEELWKTFDTHPEGLNQAEVESAREQHGENKLPAQQLSPWWVHLWVCYRNPFN
                     ILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL
                     RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLP
                     VEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQES
                     EPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLP
                     MIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDIS
                     GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERR
                     RMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQ
                     GLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVK
                     ILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKER
                     IVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLE
                     EGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVS
                     QVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHANTPET
                     QTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPL
                     ASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ"
     gene            complement(21564..21950)
                     /gene="ridA"
                     /locus_tag="OQQ75_001499"
     CDS             complement(21564..21950)
                     /gene="ridA"
                     /locus_tag="OQQ75_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminobutanoate/2-iminopropanoate deaminase"
                     /protein_id="HCS1975875.1"
                     /translation="MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPA
                     DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF
                     PARSCVEVARLPKDVKIEIEAIAIRR"
     gene            complement(22023..22484)
                     /gene="pyrI"
                     /locus_tag="OQQ75_001500"
     CDS             complement(22023..22484)
                     /gene="pyrI"
                     /locus_tag="OQQ75_001500"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HCS1975876.1"
                     /translation="MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITI
                     GLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPER
                     IDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN"
     gene            complement(22497..23432)
                     /gene="pyrB"
                     /locus_tag="OQQ75_001501"
     CDS             complement(22497..23432)
                     /gene="pyrB"
                     /locus_tag="OQQ75_001501"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HCS1975877.1"
                     /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV
                     IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA
                     IVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM
                     VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE
                     VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT
                     DVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL"
     gene            complement(23436..23570)
                     /gene="pyrL"
                     /locus_tag="OQQ75_001502"
     CDS             complement(23436..23570)
                     /gene="pyrL"
                     /locus_tag="OQQ75_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyr operon leader peptide"
                     /protein_id="HCS1975878.1"
                     /translation="MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
                     "
     gene            complement(23850..24245)
                     /locus_tag="OQQ75_001503"
     CDS             complement(23850..24245)
                     /locus_tag="OQQ75_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1975879.1"
                     /translation="MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGT
                     PEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAP
                     SYPTWTAVGVTWLAGFDFEIKVIARIPEL"
     gene            complement(24376..25089)
                     /gene="bdcA"
                     /locus_tag="OQQ75_001504"
     CDS             complement(24376..25089)
                     /gene="bdcA"
                     /locus_tag="OQQ75_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1975880.1"
                     /translation="MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA
                     ERLAQETGATAVFTDSADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRL
                     FKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
                     ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAG
                     PEASFVTGAMHTIDGAFGA"
     gene            25160..25753
                     /locus_tag="OQQ75_001505"
     CDS             25160..25753
                     /locus_tag="OQQ75_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS1975881.1"
                     /translation="MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTD
                     YLGINPPSLYAAFGNKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAAR
                     RYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFM
                     STVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE"
     gene            25898..26350
                     /gene="tabA"
                     /locus_tag="OQQ75_001506"
     CDS             25898..26350
                     /gene="tabA"
                     /locus_tag="OQQ75_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin biofilm protein TabA"
                     /protein_id="HCS1975882.1"
                     /translation="MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRL
                     FYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAF
                     LPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPARVRKAVVKMLMA"
     gene            26473..27620
                     /locus_tag="OQQ75_001507"
                     /pseudo
     CDS             26473..27620
                     /locus_tag="OQQ75_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234052.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
BASE COUNT         6623 a         6840 c         7304 g         6853 t
ORIGIN      
        1 tccagcaagt ggctatgaac agcaaaatgg tggtcgggtt tgcttgttct taccgttcaa
       61 gccttgcaac cgctgagaat aatgatggtg gaatagagag tttatttatc gcgggcataa
      121 aaaaaccctt actaaccgaa gcccggcgtt cagggttatt gcgctagaag aacttattta
      181 ttctttgcgc gctcgaagga agcaacgatt tcagctttag cggcttctgc gttttcccaa
      241 ccttcaactt tcacccactt gcctttttcg aggtctttgt agtgctcgaa gaagtgagcg
      301 atttgcgctt tcagcagttc aggcagatcg tttacgtctt taatgtgatc gtattctttg
      361 ctcagcttgc tgtgcggaac cgcaaccagt ttcgcatctt caccggcttc gtcggtcatt
      421 ttcagaacgc caaccggacg gcaacggatc acagaaccag gctgcagcgg gtacggagtc
      481 gggaccagta cgtcaaccgg gtcaccgtcc agagacaggg tgtggttgat gtaaccgtag
      541 ttgcacggat agaacatcgc ggtggacatg aagcggtcaa cgaacagtgc gccgctctct
      601 ttgtcgattt cgtatttgat cggatctgcg ttagccggga tctcaataac aacgtagatg
      661 tcttccggca gatctttacc cgcagggacg ttgagtaagc tcatgtctgt ttcctttaaa
      721 aatatgtggc aaacaagtgc cgagtattat agccaactcg cgccgaatgt ctttgcttgt
      781 tttcgtcttc attttccttt ttcgccagtt ttaagacggt atacagagca ggaaaatcca
      841 taaccgtagc cgcatttttc atagtgagat gaaagcgatt acaaacttgt gattaacgtt
      901 ttatttactt ttttgaagtg tgatgtaacg caatccgtta cataacgaat tgtctatagt
      961 tttttcgcga acatcttttc accaataata attaccccga cgaggacaac cctatgtgga
     1021 aacgcttact tgtagtctct gcagtctcgg cagccatgtc gtctatggcg ttggccgctc
     1081 cattaaccgt aggattttcg caggtcggat cggaatccgg ctggcgcgcc gcagaaacca
     1141 atgtggcgaa aagtgaggcc gaaaaacgcg gaattacgtt gaaaattgcc gatggtcagc
     1201 aaaagcagga aaaccggatt aaagcggtac gttccttcgt tgcacaaggg gtggatgcga
     1261 tctttatcgc tccagtggtt gcgacgggtt gggaaccggt attaaaagag gcgaaagatg
     1321 ccgaaatccc ggtcttcttg ctcgaccgtt ccatcgatgt gaaagacaaa tctctctata
     1381 tgaccaccgt tactgccgac aacatcctcg aaggtaagtt gatcggtgac tggctggtaa
     1441 aagaagtgaa tggcaaacca tgcaacgtgg tggagctgca gggcaccgtt ggggccagcg
     1501 tcgccattga ccgtaagaaa ggctttgccg aagccattaa gaatgcgcca aatatcaaaa
     1561 ttatccgctc gcagtcaggt gacttcaccc gcagtaaagg caaagaagtc atggagagct
     1621 ttatcaaagc ggaaaacaac ggcaaaaaca tctgcatggt ttacgcccat aacgacgaca
     1681 tggtgattgg tgcaattcag gcaattaaag aagcgggcct gaaaccgggc aaagatattc
     1741 tgacaggttc tatcgatggc gtaccggata tctacaaagc gatgattgat ggcgaagcga
     1801 acgccagtgt tgaactgacg ccgaatatgg cgggacccgc ttttgacgcg ctggagaaat
     1861 acaaaaaaga cggcaccatg cctgaaaagc tgacgttaac caaatccacc ctttacctgc
     1921 ctgataccgc aaaagaagag ttagagaaga agaaaaatat ggggtattga gggttgctat
     1981 gcctgatgcc gattcgtagg ccggataagg cgctcgcgcc gcatccggcg atggtgcact
     2041 gaagcctgat gcgacgctta ccgcgtctta tcatgcctac tgggagcacg ctttacaccg
     2101 ggggaaacca tgacgaccga ccaacaccag gaaatcctcc gcaccgaagg attaagtaaa
     2161 tttttccccg gcgtcaaagc gttagacaac gttgatttca gcctgcgccg tggcgaaatc
     2221 atggcgctgc tcggtgaaaa cggggcggga aaatcaacgc taatcaaagc attaactggt
     2281 gtataccacg ccgatcgcgg caccatctgg ctggaaggcc aggttatctc accgaaaaat
     2341 accgcccacg cgcaacaact cggcattggc accgtctatc aggaagtcaa cctgctaccc
     2401 aatatgtcgg tcgctgataa tctatttata ggccgcgaac ccaaacgctt cggccttcta
     2461 cgccgcaaag agatggaaaa gcgcgccacc gaactgatgg catcttacgg tttctccctc
     2521 gacgtgcgcg aaccgctcaa ccgcttttca gtcgcgatgc agcaaatcgt cgccatttgc
     2581 cgggctatcg atctctccgc caaagtgctg atcctcgatg aacccaccgc cagcctcgac
     2641 acctaggaag tggagctatt atttggcctg atgcgtcagt tgcgcgatcg cggcgtcagc
     2701 ctgatctttg tcactcactt tctcgatcag agctatcagg tcagcgatcg gatcaccgtt
     2761 ttacgcaacg gcagtttcgt aggctgtcgg gaaacgcgcg agctaccgca gatcgaactg
     2821 gtaaaaatga tgctggggcg cgagctggat acccacgcgc tacagcgtgc cgggcgaaca
     2881 ttgttgagcg acaaacccgt tgccgcgttc aaaaattacg gcaaaaaagg aacgatagca
     2941 ccgtttgatc tcgaagtgcg ccccggcgag atcgtcggcc tggcaggctt gctgggatcc
     3001 ggacgtaccg aaaccgccga agtgatcttc ggtatcaaac ctgctgacag cggcacggcg
     3061 ttgatcaaag gcaaaccgca aaacctgcga tcgccacatc aggcttcggt actgggcatc
     3121 ggcttctgcc cggaagacag gaaaaccgat ggcatcatcg ctgccgcctc ggtgcgggaa
     3181 aatatcatcc tcgctctcca ggcccagcgc ggctggctac gacctatttc ccgcaaagag
     3241 cagcaagaga ttgccgaacg ctttatccgc cagcttggca ttcgcacacc ttcaactgaa
     3301 caaccgattg aatttctctc cggcggcaat cagcaaaaag tgttgctttc acgttggcta
     3361 ctgacccgac cgcaatttct gatcctcgat gagccaaccc gtggcattga tgttggtgcc
     3421 cacgccgaga tcatccgcct gattgaaacg ctatgcgccg atggtctggc gctgctggtg
     3481 atctcctccg aactggaaga actggtgggc tatgccgacc gggtgatcat catgcgcgat
     3541 cgcaaacagg tggcggagat ccggctggca gagctttccg ttccggctat catgaacgcc
     3601 attgcggcgt aaggagaaca gtgtgatgcc tcaatctctt ccggacacca ctacgccaaa
     3661 aaggcgcttt cgctggccga cggggatgcc gcagctggta gcactattgc tggtgctgct
     3721 ggtcgacagc ctggtagccc cgcatttctg gcaggtagtg cttcaggatg ggcgtttgtt
     3781 cggtagcccc atagacattc ttaaccgtgc agcccccgtt gcgttactgg cgattggtat
     3841 gacgctggtg atcgccaccg gtgggattga tctctccgta ggggcggtga tggctatcgc
     3901 cggagccaca acggctgcga tgacggtcgc ggaagtcagc ctgccgattg ttttgttaag
     3961 cgccctaggc accggcatcc tggcgggatt gtggaacggc atactggtag cgatcctcaa
     4021 aattcagcca tttgtcgcca ccctgatcct gatggtcgcc gggcgcggcg tggcgcaact
     4081 gatcacctcc ggacagatcg tcacgtttaa ctcgccggat ctctcatggt ttggcagtgg
     4141 atcgctgttg ttcctgccaa cgccagtcat tattgcggta ctgacgcttc tcctgttctg
     4201 gctgttgacc cgcaaaacgg cactggggat gtttatcgaa gccgttggta tcaacattcg
     4261 ggcggcaaaa aatgccgggg taaacacgcg gatcatcgtc atgctcactt atgtgttgag
     4321 cgggctgtgt gcggcgattg cgggcattat cgtggcggcg gatattcgcg gtgccgatgc
     4381 caacaacgcc ggattatggc tggagctgga cgccattctc gcggtggtga ttggcggcgg
     4441 atcgctgatg ggcgggcgct ttaacctgct gctctcggta gtgggggcgc tgattattca
     4501 ggggatgaac accggaattt tgctttcggg ctttccaccg gagatgaacc aggtggtgaa
     4561 agcggtggtg gtgctttgcg tgctgattgt ccagtcgcaa cgctttatca gtctgattaa
     4621 aggagtacgt agccgtgata aaacgtaatt tgccactgat gatcaccatc ggcgtctttg
     4681 tgctgggcta tttctactgc ctgacgcagt ttcccggttt tgcttccaca agagtgatct
     4741 gcaatatcct gaccgataac gcttttctgg ggattattgc cgttggtatg acctttgtga
     4801 tcctctctgg cggtatcgat ctctccgtcg gttcggtgat cgcctttact ggcgtgtttc
     4861 tggcaaaagt ggttggcgat ttcggcctct cgccgctgct ggcgtttccg ctagtgctgg
     4921 tgatgggctg tgccttcggc gcatttatgg ggcttctgat cgacgccctg aagatcccgg
     4981 catttatcat tacgcttgcg gggatgttct ttttgcgcgg cgtcagctat ctcgtttcgg
     5041 aagagtcgat tccgataaac catcccattt atgacacgct ctcaagcctt gcgtggaaaa
     5101 tccccggcgg cggtcgcctt agtgcgatgg ggctgttgat gctggcggtg gtggttatcg
     5161 gtattttcct tgcgcatcgt acccgttttg gcaatcaggt gtacgctatt ggcggcaacg
     5221 cgacgtcggc gaacctgatg gggatttcta ctcgcagcac tactattcgc atttatatgc
     5281 tctccaccgg actggcaaca ctggcgggga ttgtcttctc gatttatacc caggccggat
     5341 atgcactggc gggcgtaggt gtggaactgg acgccatcgc gtcggtggtg attggcggta
     5401 cgttgttaag tggtggcgtc gggacggtgc ttgggacgct ttttggcgtg gcaattcagg
     5461 gactgatcca gacttacatc aactttgacg gcacgctgag ttcctggtgg acgaaaatcg
     5521 ccatcggtat tttgttgttt atttttatag cattacagcg tgggttaacg gtgctgtggg
     5581 agaatcgtca gagttcgcca gtgacaagag tcaacattgc gcagcgataa aaatgcctct
     5641 ccgtgtggag aggcgcagga gattacgcgt ccgggaactc acggataaag cgttcgacat
     5701 cttcaaccat atggtcgttg ccgacaaaga acgaacggcg ctggtgcaga gtttccggga
     5761 tgatatccag aatacgctct ttgccatcgc tcgctttacc gcccgcttgt tccgccagga
     5821 atgccatcgg gttgcactca taaagcaaac gcagtttgcc gtccgggtgg ctggcggtgc
     5881 ttgggtagag ataaataccg cctttcagca ggttacggtg gaaatccgca accagtgaac
     5941 cgatataacg tgaggtatac gggcggttgg tggatttatc ttcttcctgg cagaatttaa
     6001 tgtacttctt caccccgttc ggaaacttaa tgtagtttcc ttcgttgatg gagtaggttt
     6061 tgcctttctc cgggaagcgc atccgttcct ggcacaggca gaaaacgccc agcgaaggat
     6121 cgtaagtaaa ggcgtgaaca ccgcatccgg tggtgtaaac cagcatggta gaggagccgt
     6181 ataccacgta acctgccgca acctgtttgt taccaggctg gaggaaatct tcttccgtta
     6241 ccggcgtgcc gacgggcgta actcggcggt agatggagaa aatggtaccg acagagacgt
     6301 taacatcgat gttggacgag ccatccagtg ggtccatcag caccacgtat tttgcatgtt
     6361 cacagccttc aaagacaaca atctcatctt cttcttcaga ggcaatgcct gcaacgatat
     6421 cgcgtgcttt cagtgcggct ttcagttttt cattagcgaa caagtcgagt ttttgctgaa
     6481 cctcgccctg cacgttctca gcaccgctgg cacccaggat atcaaccagt cctgctttgt
     6541 tgatatcgcg atggataatc ttggcgccca gttttattgc cgacagcaaa gcagtgagct
     6601 caccggtagc atgagaaaac tcgtgctgct tttcgacaat aaattcacct aacgttttca
     6661 taaaactttc cctgcaatgt ttatggagta aagcgaccgc aacaatctta acaaataatc
     6721 tcaatgttgc gctcaggtga atcgcgccag caaattacgg attatcctga aatgcgtttc
     6781 tcacttgccc gacatatgcg taaaatgagc ggcagattaa aaaaggatag tgacgtatgc
     6841 gcattcatat tttaggaatt tgtggcacgt ttatgggcgg tctggcgatg ctggcgcgcc
     6901 agttaggcca tgaagtaacg ggttcggacg ccaatgtgta tccgccgatg agcaccttac
     6961 ttgagaagca aggcattgaa ctgattcagg gttacgatgc cagccagctc gatccgcagc
     7021 cggatctggt gattattggc aacgccatga cccgtggaaa tccgtgtgtg gaagcggtac
     7081 tggaaaaaaa catcccttat atgtcaggtc cacagtggct gcacgatttt gtgctgcgcg
     7141 accgctgggt gctggccgtt gccggtacac acggcaaaac caccaccgcg ggaatggcga
     7201 cctggattct ggaacagtgt ggttacaaac cgggatttgt gatcggcggt gtgccgggga
     7261 actttgaggt ttcggcgcgt ctgggcgaaa gcgacttctt tgttatcgaa gcggatgagt
     7321 acgactgcgc cttcttcgac aaacgctcta aatttgtcca ttactgcccg cgtacgctga
     7381 tcctcaacaa ccttgagttc gatcacgccg atatctttga cgacctgaaa gcgatccaga
     7441 aacagttcca ccatctggtg cgtatcgttc cggggcaggg ccgtattatc tggccggaaa
     7501 atgacatcaa cctgaaacag accatggcga tgggctgctg gagcgagcag gagctggtgg
     7561 gtgagcaggg gcactggcag gcgaaaaagc tgaccactga tgcttccgaa tgggaagtct
     7621 tgctggatgg cgaaaaagtg ggcgaagtga aatggtcgct ggtaggcgaa cataatatgc
     7681 ataatggcct gatggcgatt gcggcggccc gccatgttgg cgtagcgccg gcagataccg
     7741 ctaacgcgct gggttcgttt attaatgctc gtcgccgtct ggagttgcgt ggtgaagcga
     7801 atggcgtcac ggtatatgac gattttgccc atcacccgac ggcgattctg gcaacgctgg
     7861 cggcgctgcg tggcaaagtt ggtggtacag cgcgcattat tgctgtgctg gaaccgcgct
     7921 cgaataccat gaaaatgggg atctgcaaag acgatttggc accttcatta ggtcgtgccg
     7981 atgaagtctt cctgctgcaa ccggcgcata ttccgtggca ggtggcagaa gtggcagaag
     8041 cctgcgttca gcctgcacac tggagtggcg atgtggatac gctggcagat atggtggtga
     8101 aaaccgctca gcctggcgac catattctgg tgatgagcaa cggcggtttt ggtgggatcc
     8161 atcagaaact gctggatggt ctggcgaaga aggcggaagc tgcgcagtaa ttcggcctca
     8221 gcctgagata gcattgccgg ataaggcgtt tacgccgcat ccggcaaacc atactcacat
     8281 caacaacgaa aattactctt cattctccgc cagttcgcgc agatactgga aaatctggcg
     8341 tgcggatttc ggcggcttat tcccttcttt ctctttcttc gcgttgcgga tcagagtacg
     8401 cagttgctga cgatcggcat cgggccacag atttaatacc tcagcgatgg cgtcatcacc
     8461 ttgatcgatc agacgatcgc gcaggttttc cagtttatgg aacagcacca cctgctggtt
     8521 gtgacggttt ttcagcttat ccagcgcctg acggatcggt tctacatcgc gctggcgcag
     8581 catcttaccg atgagctgca actggcggcg gcgaccttcc atcttaatac gctgggcgag
     8641 ctcaatagcc gcgcgcagat ccgcatctaa cgggatctta tccagcgcgt ttttccccag
     8701 atcaacaatt tccgcgccaa ggcgttttag ctcctcggca tcacgtttaa tttcactttt
     8761 actgacccag ataatttcat cgtcttcgtc ttcgatgtca tcaccgggaa cgtcgtcgag
     8821 ccagtcttcg ggctgcttag tcatctcagg ctccttaaaa aaagaggcta atgttaccag
     8881 ttaagatgcg cactgaaaaa cggttctctg ttagacttca gagaaactct ctacattatg
     8941 gcacttgcaa tgaaagtaat ctctcaagtt gaagcgcagc gcaagattct ggaagaagca
     9001 gtttccactg cgctggagtt ggcctcaggc aaatcggacg gtgcggaagt tgccgtcagc
     9061 aagaccaccg gcattagcgt aagcacgcgt tatggtgaag tggagaatgt tgaattcaat
     9121 agcgatggcg cgctggggat cactgtttat caccagaacc gcaaaggtag cgcatcatcc
     9181 accgatttaa gcccgcaggc cattgcccgt actgtacagg cggcgctgga tattgcccgt
     9241 tatacctcgc cagatccctg tgccggcgtg gcagacaaag agctgctggc ctttgacgca
     9301 ccagatctcg acttgttcca ccctgcggaa gtttccccgg atgaagccat tgaactggcg
     9361 gcccgcgcag aacaggcggc attgcaggcg gacaaacgca tcaccaatac cgaaggtggc
     9421 agctttaaca gccactacgg tgtcaaagtt tttggcaaca gccacggcat gttgcagggt
     9481 tactgctcaa cgcgtcattc gctctccagc tgtgtaattg ccgaagaaaa tggcgatatg
     9541 gagcgtgatt acgcctacac cattggtcgt gcgatgagcg atctgcaaac gccagagtgg
     9601 gttggggtcg actgtgctcg ccgtacttta tcgcgcctgt caccgcgtaa actctccacc
     9661 atgaaagcgc cggtcatttt tgccaatgaa gtggcaaccg ggctttttgg ccatctggtg
     9721 ggggcgatag cgggtggatc ggtttaccgt aaatctacct tcctgctgga ttcgctgggt
     9781 aaacaaattc tgccggactg gctgaccatt gaagagcatc cgcatctgct gaaagggctg
     9841 gcgtcgacgc cattcgacag cgaaggtgtg cgcaccgagc gtcgcgatat tattaaagat
     9901 ggcatcctga ctcagtggct gctgaccagc tattcggcgc gaaaactggg gctgaaaagc
     9961 accggacatg cgggcggtat tcacaactgg cggattgccg gacaaggtct aagcttcgag
    10021 cagatgctca aagagatggg caccgggctg gtggtgacgg aattgatggg ccagggcgtg
    10081 agtgcaatta ccggtgatta ttcccgtggt gcggcgggct tctgggtaga aaacggcgaa
    10141 attcagtatc cggttagcga aatcaccatc gcaggtaatt taaaagatat gtggcgcaat
    10201 attgtcaccg tcggtaacga tattgaaaca cgcagtaata tacagtgtgg ttctgtgctg
    10261 ttgccggaga tgaaaatcgc cggacagtaa aaaaactggc gcgacctgtc gcgctataaa
    10321 ctaaaaaatt acacaaaatc attcgcactg catcgagacg gaaagtgaat gagggccggg
    10381 gagcgtactc gcagtacgtg acccggtcga atgagcgtag tcgtcgatga ggcagtgtga
    10441 atgatgaagt gtaaataaaa aaggaagtga gcaatgcgaa aaagcctgtt agctattctt
    10501 gcagtctcct cgttggtatt cagttcggcg tcgtttgccg ctgatcttga agacaatatg
    10561 gaaaccctca acgacaattt aaaagtggtc gaaaaagccg ataacgcggc gcaagtcaaa
    10621 gacgcgttaa cgaagatgcg cgccgcagcg ctggatgcgc aaaaagcaac gccgccgaag
    10681 ctcgaaggca aatcaccgga cagcccggag atgaaagact tccgtcacgg tttcgatatt
    10741 ctggtcggtc agattgacga cgcgctgaag ctggcaaatg aaggtaaagt aaaagaagcg
    10801 caggctgccg cagagcaact gaaaacgacc cgcaacgcct atcaccagaa gtatcgttaa
    10861 ttcctcattt ccctgttgcc tgcactcagg taacagggaa cttatcatcg caaatgatgc
    10921 accacctgat tgctgctgcc gcgccagatc agggaagggt cttttaaatc ctgcacaaat
    10981 ttgccgtcga ccagcacgtt aatcaaatca acaacctgca tttgcgctgc gttgagttcg
    11041 tcgagtttat agcctgtcca cacccagatg tctttacccg gacactcggc gcggatgcgt
    11101 tgtaccagtt tcagaatatc cggcacgttt tgcggatgca gcggatcgcc gccggagagg
    11161 gaaataccct ggcgtttgat acgagtgtca ttcagatcgt taatgatctg gtcttccatt
    11221 gctttagtaa atggctgacc ggaatttacc cgccatgtgc ttttgttata gcaaccgggg
    11281 cattcatgaa cacacccgga gacaaacaga gtgcaacgag tgccggggcc gttgacgatg
    11341 tcgacaggat agtactgatg ataattcatt atttcgcctg gcttatcagt ccgcgtgtag
    11401 actgcatccg gtaatcaatg cctgatgcga cgctgtcgcg tcttatcagg cctacagccg
    11461 ttgccaaatg taggccggat aaggcgttta cgccgcatcc ggcaatcaac gcgggatgcg
    11521 acgctttcac atcacatccg gcatttgctt agtgcagatc aacctatctg cccatttccc
    11581 aaatgtttaa cgcggcgctt aacttcttcc tgcttgccgg cgttaaacgg acgtgcatcc
    11641 gggctaccta aatatccgca cacgcggcga gttaccgaca cacgggaggc gtcatggtta
    11701 ccacatttcg ggcaggtgaa gcctttgctg gtgcactcga actcaccggt aaagccacac
    11761 tcgtagcact catcaatcgg tgtattggtg ccgtaatacg gtacatgctg atagctgtaa
    11821 tcccagacat cttccagcgc cttcaggttg tgctgaatgt ttgaatactc gccgtagcaa
    11881 atgaaaccac cgttcgccag cggcgggtaa ggcgcttcaa agtcgatctt gtcgtacggg
    11941 ttcaccttct tctccacatc gaggtggaaa ctgttggtgt agtaaccttt atcggtcacg
    12001 cccggcacca cgccaaactc agcagtatcg agacggcaga agcggtcgca caggttttca
    12061 ctcggcgtgc tgtagagact gaaaccataa cccgtttctt ccttccactg atccactgcc
    12121 tgacgcagac gttcaacaat ggcgatacct ttcgcgcgaa gctgctcgtt gtcgtaaaca
    12181 tgctcgccgc cgaacagcgc gttaatggtt tcgtggatgc cgatgtaacc cagcgaaata
    12241 gacgcacgac cgtttttgaa gatttcagaa acatcatcgt cagcattgag acgcacgcca
    12301 caagcacctt ccatatagag gatcggggcc acgcgcgctt tcacgccttc gagacgagcg
    12361 atacgggtca tcagcgcctt acgtgccagc accagacgtt catccagcag cttccagaag
    12421 gtggcttcat cgccttttgc ttccagagca atacgcggca ggttcaggct gatcacgccg
    12481 aggttgttac gaccatcgtg gatctgctcg ccgttttcat tttcccacac gccgaggaag
    12541 ctgcggcagc ccatcggagt tttaaacgaa ccggtgactt tcactacctg atcgtagttc
    12601 aggatatccg gatacatgcg cttgcttgcg cactccagcg ccagctgttt gatgtcgtag
    12661 ttcggatcgc cttttttatg gttcaggcca tcgcgaatcg caaacaccag tttcgggaac
    12721 accgcagttt tacggttttt accgaggcct gcgatacggt tacgcaggat agattcctga
    12781 atcaggcgcg actcccagct ggtgcccaga ccaaaaccaa aggttacaaa cggcgtctga
    12841 ccgttggcgg tgtgcagggt gtttacttcg tactccagcg actggaaggc atcgtagcac
    12901 tctttaatgg tacgagagtt agcgtagcct tcggcgtccg ggatgttcca ctcttctgcg
    12961 gtcttgcgat gtttgttgta gctggcggtg acaaacggtg ccagcacttc atcgatacgg
    13021 ttaatggttg tgccgccata aatatggctg gcgacctgag caataatctg cgcagttaca
    13081 gcggttgccg tagagatcga cttcggcggt tcaatctcgg cgttccccat cttaaagccc
    13141 tgggtcagca tgcctttcag gtcgatcaac atgcagttga acatcgggaa gaacggcgag
    13201 taatcgagat cgtgatagtg aatatcgcca cgctcatgtg cctgcaccac gtcacgcggc
    13261 agcaggtgct gacgtgcata gtgtttagcc acgatcccgg ccagcaggtc gcgctgggtt
    13321 ggaatcacct tgctgtcttt gttggcgttt tcgttgagta acgaggcgtt ggtctgctcg
    13381 accagaccac ggatctcctg attcaggcga ccgcgttttt cacgttcaat gtcgcgatcg
    13441 tgacggtact cgatgtaagc acgagccagt tgtttgtatg gacctgacat cagctggttt
    13501 tcaacagcgg tctggatctc attgatatcc acctggttgc ggccctgcat ctgctcgctg
    13561 acaactgcag caacagtggc gcaataatcg gcatcatcga cttccgctgc tttagctgca
    13621 cgcagaatcg cttctttgat gcgctctgat ttaaacggca ctttgcagcc gtctcgtttc
    13681 atcacatgcg gtgtcatgat cgctccatat ttttaagaac aggttatcca cagaaattgg
    13741 gaaaggcgtt ttccggtttt ttcgtttcgt tttccggtgc tttccgcaat cgccatccgc
    13801 ttttccacaa cgccgcacct ttttcgtggg gagctgtagt agcaattata gtcgattaat
    13861 acaacatatt gggttgggac gcattttaaa gtctatatat agtgctttgc atcaaggatg
    13921 tttgaacttt ttttgatgta gctcaaagta aaaagcagag cgtacggatg acgggcgcta
    13981 cagcgttatg taaatttttt aatgaatttg ctggttgaaa aataaacaaa aacaacatgc
    14041 tgacagacaa aaccccggaa tgaccggcat taccggggct tagggaagat ttacttctgt
    14101 aaccaccaga cagcctcaaa aggccgtaaa ttcatggcac agggttgtgg tgaggcttct
    14161 tcgtagttat gcatcacaag ctgccagttg ccgcgcattt gccctggctg ccagggttgg
    14221 atctcacggc taaggttggc aatgaccagc aaggtttgcc ccttccattc acggcgatag
    14281 caccacaata cagggctgtt tggcagcaga tcctggtaat tgccccatgt caggatggct
    14341 tcctgcttac gcagtgcgat taacttttgg taggtgtaaa acaccgagga atcatcggcc
    14401 agcgcggctt ctacgttgat ttgttgatag ttatcaccca ggccaatcca cggttcgcca
    14461 gccgtaaatc cggcattatc gccgttgctc cattgcatgg gcgtgcggct gttgtcacgg
    14521 gatttactgg cgaggattgc caataactcg tcggcatcac gaccatcgtt gcgcagctcg
    14581 gcaaacatat tgaggctctc tacgtcgcga tagtcagtaa tgcgcgtgaa atgcgggttg
    14641 gtcatgccaa tctcttcgcc ctggtagata tacggcgttc cctgcatgcc atgcagcacc
    14701 atcgccagca tttttgccgc aggcacgcgg tattcacctt catcaccaaa gcgagaaaca
    14761 atgcgcggct gatcgtggtt acaccagaac aaggcattcc atgctacgtt gtgcattcct
    14821 tgttgccagt ggcggaacaa tgttttcaac gccacaaagt caggtttagc cagcgtccat
    14881 ttttcaccac cgggataatc gaccttcagg tgatgaaaat taaaggtcat cgacaattca
    14941 ctgcctgtca gtgccgcgta tcgctggcaa tgctcaaggc tggtggagga catttcacct
    15001 acggtcatta acccgcgtgg cgtaaacaca tcgcggttca tctcgtgcaa aaactcgtgt
    15061 gctcgtggcc cgtcggtgta gaagcgacgc ccgtcgccat ccaggtcatc agggaaacgc
    15121 gggtctttgg agatcagatt caccacatcc aggcgcaacc cgtcgacccc acgatcggcc
    15181 cagaactcac agactttttt cagcactgcg cgtaccgctg gattctccca gttgagatcc
    15241 gcctgttctg gtgcaaagag atgcaaatag tactgttcgc tttccgcatg ccagcgccac
    15301 gcactaccgc caaattttga acgccagttg ttcggtggcg tttctggttc tccatcgcgc
    15361 cagatataaa actggcggta agggctttct ttgttcagcg cctcgcgaaa ccaggcatgt
    15421 tgggtagagg tatggttaaa caccatatcg agaatgatac gaatcccgcg cgattttgcc
    15481 tgcgtcacca gttcgtcaaa atcgtccagc gtgccgtagg tgggatcaat cgccgtatag
    15541 ttcgctacgt cgtaaccgtt atcgacctgg ggagagacat aaaagggggt tagccagatg
    15601 gcatcaacgc ccagtttatg cagatagtcc aggcgttgga taacgccacg taaatcgccg
    15661 gtaccgctac ccgtggtgtc ctgaaaactc tttggataaa tctggtagat aacgccgttt
    15721 tgccaccagt ggggaggatt agtcattacg ttattcctgc aaatgcgagg gggcgcaatt
    15781 gcgccccgaa gaaaattaaa caatgtccag cgtgcccagg cggtatttcc gctgatagat
    15841 aaacgaggtg agtacaatcg ggatgatgat ggcgatagcc attgccagcg caaacacctg
    15901 ccagtagttc ggttgaatcg agagaattcc cggcaggccg cctacgccga tgccattcgc
    15961 cataacgccg ttcaggccgc atagcaatcc tgccagacca gaaccaatca tcgcgcacag
    16021 catcgggaag cgatatttca ggttgatgcc gtacattgca ggctcagtga ccccaagcca
    16081 ggcggagatc gccgcaggca cggagatctc gcgttcattg tgcttgcggc tggaaatgat
    16141 aatgccgatc acggcggagc cctgagcgat attcgacagc gcaatcagtg gccacactgg
    16201 cgtaccaccc atgctttgaa tcatctgcaa atcaatagca agcgtggtct ggtgtacccc
    16261 ggtgatcacc agcggggcgt acaggaagcc aaacaatgcc gcgccaatcg gagcaaagct
    16321 gccggtcatc aggtgacgta ccgcaaaggc aacgccatcg ccaatcatgc gaccaaacgg
    16381 accaatcagc gcatgggcga ggaacaccgc gaggatcagc gaacagacgg gcaccaccac
    16441 cagatagagg taatctggca cgatgcgttt aaggcgagtt tcaataacgc ccagcgccag
    16501 cccggctaac agtgccggga tcacctgcgc ctgatagccc actttggcga tgctgaacat
    16561 gccaaagtcc cacacttccg gcagctgctg cccgagcaga taagcgttca tcagttgggg
    16621 ggaaaccagt gtcacgccaa gcacgatacc aaggatcggt gtgccgccca tttttttcac
    16681 cgctgaccag caaatcccga ccggcaggta gaagaagatc gcttcaccga tcaaccacag
    16741 aaaatcgtag atcgtttgca gggaagggta catttgcgcc agcgtttgac cgttgctcat
    16801 gggcaaatcg ccgatcacat tgcgaaaacc gaggatcaaa ccgccgctaa tcaacgcggg
    16861 cagcaacggg aagaaggtct ctgcgaaatg agtgatcaac tgctcatgcc atttcatatt
    16921 ctgccgggcg gcttttttta cctgctcttt atcaacctgc gcctgtccgg ttgacgctat
    16981 cagtgcttga tagtagtcac ccacgttggt gccaatcacc acctgaaatt gcctggcatt
    17041 ggtgaaacag cctttcacca tggggagttg ctcaatttct ttcggtctgg cattggccgg
    17101 ttggttgagg acaaagcgta ggcgagtaat acagtggctc accgtcgcaa tattgccgcg
    17161 cccgccgacc agttcaatca accgatcgat atccgtttgg tttattttgc tcatcataaa
    17221 gccccatggc agatgacatt tttggttggc tgcagaatat attgcgcgga aaaatttaaa
    17281 aacgggaacg ttcccgaaac gcagcgaaga tcacaattta tcgttcagga aacgatctgg
    17341 acagggtggc ggggatgatg atttgttgcg gttcgctgcg cccggttacc tgtgcgatca
    17401 actggcaggc cgcctggcgt ccagcttcgg cgtaaccggg atctacggtg acgatctccg
    17461 gatggaggaa tttcattaac ggcgtattac cgacgctcgc cagttgcaag gtgtcgatgc
    17521 gttgctcttg caggtattta cttgcgccaa gtgccagcgt gtcggttgcg cacagtaagg
    17581 cggtagtttc aggcgtaatc acttttgcta cgttctcata gccttgcttc atagcaaggc
    17641 ctggcagagc ggcaacggga tgcagtttat gcgctttgca gaacgccagg taggcttcgt
    17701 gacgtcgctt accggtcgtc acgtcactgt gcggcacgcc gagataactg atattacgat
    17761 gcccctggtc atacagccgt tgcatcagga tcttgattgc cccttcgtcg tcataacaga
    17821 ccgaagcaaa gccttttgcg tcacgcgcca gcagaaccag cgatgactgc cagtgggcta
    17881 acatttcttc tgttatgccg gtaaaaccga acagcactac gccgtcgata ttacgccgtt
    17941 tcagcacccc caaatgttcg gcaactaatt gcggggaaaa ctgactttcc atcatgattg
    18001 ggtcgtaacc ttgttcatag aactctggca gcatggtttg aacggcgaga ttttctgaca
    18061 acgaatccag gcgggtaaca atgatggcga ccactttatc gctttgccca cgcatagcgc
    18121 gcgcagagcg ggaaggggaa aatccatgct gattcatcac tgcttcaaca cgctcgcggg
    18181 tgcgctggct cacgccgctt tcgttattca gcacccggga aactgtagat ttccccacgc
    18241 cgcttaagcg cgcgatgtct ttgatggtca gccgattttg catcctgttg tcctgtaacg
    18301 tgttgtttaa ttatttgagc ctaactttac ccgtgcattc agcaatgggt aaagtctggt
    18361 ttatcgttgg tttagttgcc agcaggtatt atatcgccat agatgctacg aatattattg
    18421 gattctcctt attatttgcg gcgctttttt cacttaccgg aggttatatg gaacctgatc
    18481 ccacgcctct ccctcgacgg agattaaaac ttttccggta agcccgtctt ttcacggcgt
    18541 taccggatgc gtaaggccgt gacgttttaa cgtccctgct cagctttatt accttcaggt
    18601 aaggcttcgc cacgcctgaa gacatttctg tactgtttca gacagtgcgg agggactcct
    18661 tatgtttaaa gaaattttta cccggctcat tcgccattta ccttcccgtc tggttcatcg
    18721 tgatccattg cctggcgcgc agcagacagt gaatacggtg gtcccgccgt ccttaagtgc
    18781 gcattgcctg aaaatggcgg tgatgcccga agaagaattg tggaaaacgt tcgacaccca
    18841 tccggaaggg ttaaatcagg cggaagtgga atctgcccgc gaacaacatg gtgaaaataa
    18901 attacccgca caacaactgt cgccgtggtg ggtacattta tgggtctgct atcgcaaccc
    18961 ctttaatatt ttactcacca ttctcggcgc tatttcttac gccacggaag atttatttgc
    19021 tgcgggcgtt atcgcgctaa tggtcgctat ttctacgttg ctgaacttta ttcaggaagc
    19081 acgttccact aaagcggcag atgccctgaa agcgatggtc agcaataccg cgacggtgct
    19141 gcgcgtaatt aacgacaaag gcgaaaatgg ctggctggag atcccgatcg accagctggt
    19201 gcccggcgat attataaaac tggcggcggg ggatatgatc ccggcagatt tacgtatctt
    19261 gcaagcgcgg gatctgttcg tcgctcaggc gtcgttaacc ggtgagtctc tgcccgtgga
    19321 aaaagccgct accactcgcc agccggagca cagcaatccg ctggagtgcg acacgctgtg
    19381 ttttatgggc accaccgtgg tgagcggcac ggcacaagca atggtgattg ctacaggtgc
    19441 caatacctgg tttggtcaac tggcggggcg tgttagtgag caggaaagcg agccgaatgc
    19501 ctttcagcaa gggatcagcc gcgtcagtat gctgctgatt cgctttatgc tggtgatggc
    19561 accggtggtg ctgttaatca atggctacac caaaggcgac tggtgggaag cggcgctgtt
    19621 tgcgctttcg gtcgcggtag gcctaacgcc ggaaatgttg ccgatgattg ttacctcgac
    19681 gctggcgcgc ggcgcagtaa agctgtcgaa acagaaagtg atcgtcaaac atctggatgc
    19741 tattcagaac tttggcgcaa tggatattct gtgcactgat aaaaccggca ccctgacgca
    19801 ggataaaatt gtgctggaga atcataccga tatctccggt aaaaccagcg aacgcgtgct
    19861 gcatagcgcg tggttgaaca gtcattatca gaccggactt aaaaacctgc tcgatacagc
    19921 ggtgctcgaa ggtacggatg aagagtcagc gcgctcgctg gccagtcgtt ggcaaaaaat
    19981 cgatgagatt ccgtttgatt tcgagcgtcg ccggatgtcg gtggtagtgg cagaaaatac
    20041 cgagcaccat cagctggttt gcaaaggtgc attgcaggaa atcctcaatg tgtgttcgca
    20101 ggtgcgtcac aatggcgaga ttgtgccgct cgatgacatc atgctgcgta agattaagcg
    20161 ggttactgat acgctgaatc gtcaggggct gcgcgtggtt gcggtggcga cgaaatacct
    20221 gccagcgcgt gaaggagatt accagcgggc ggatgaatcc gacctgatcc tcgaaggata
    20281 tattgctttt cttgatccgc caaaagagac aaccgctccg gcactgaagg cattaaaagc
    20341 gagtggaatt accgtaaaaa tccttactgg cgacagtgag ttagttgcag cgaaagtgtg
    20401 ccatgaagtg gggctggacg cgggagaggt ggtcattggt agtgatattg aaacgctatc
    20461 tgacgacgaa ctggcaaatc ttgcacagcg caccacgctg tttgcccgcc tgacgccgat
    20521 gcataaagaa cgcattgtga ccttactgaa gcgcgaaggg catgtggttg gctttatggg
    20581 cgatggtatt aatgatgcgc ccgccttacg cgcggcggat atcggcattt ctgtggacgg
    20641 cgcggtagat attgcccgtg aagcggctga tatcatcctg ctggaaaaaa gcctgatggt
    20701 gctggaagag ggggttattg agggacgtcg cactttcgcc aacatgctga aatacatcaa
    20761 aatgacggcg agttctaact ttggtaatgt gttcagcgtg ctggtggcga gtgctttctt
    20821 gcccttcctg ccgatgttgc cgttacactt gcttattcag aacctgctgt acgatgtgtc
    20881 acaggtggcg atcccgtttg ataacgtcga cgacgagcaa attcaaaagc cgcagcgttg
    20941 gaatccggcg gatctggggc gctttatgat cttcttcgga ccgatcagct cgatcttcga
    21001 tattctgacg ttttgcctga tgtggtgggt attccatgcc aacacgccgg aaacgcaaac
    21061 gctgttccag tcgggatggt ttgtggtggg cttactgtcg caaacgctga ttgtgcatat
    21121 gatccgcacc cgccgtgtgc cgtttattca gagctgtgca tcgtggccgt taatgatcat
    21181 gaccgtgatc gtgatgattg tcgggatcgc attgccgttt tcaccgctgg ccagttatct
    21241 gcaattacag gcgttgccgt taagctattt cccgtggctg gttgcgattc tggcagggta
    21301 tatgacgtta acccagttgg tgaaaggatt ttatagccgt cgttacggct ggcagtaaag
    21361 aataaactag gcatggtggc ccggattcag attgcagaca aagtgagttt tgttcatgcc
    21421 ggatgcggtg taaacgccta atccggccta caaattcaat caattgcagg aatcacgtag
    21481 gcctgataag cgtagcgcat caggcgattt tgcgtttgtc atcagactta atccgggcat
    21541 gatagcccgg atttccatca agattagcga cgaatagcga tcgcttcgat ctcaatcttt
    21601 acgtctttcg gcagacgggc aacttcaacg caagaacgtg ccgggaaggt ggcgttgtgt
    21661 tcggtgaaga aggcttcgta agtggcgttt acggttgcga agtcgttcag atcttttaca
    21721 aacacggtag ttttaacgat gtcgcccact ttcagaccag cggcttcgac gatcgctttt
    21781 acgttatcca gcgactgacg tgcctgtgca gcgacgtctg ccggtacttc gcccgttttc
    21841 ggatttaccg ggatctgacc ggaggtgatg atcatatttc ccagatcaac gccctgtacg
    21901 taaggaccga tagctgctgg tgcattttcc gtcgcgatag ttttgctcat gatttctcct
    21961 ttattacagc ggtaaaaagt ctggctcatt atagggagcc agacttttat taccaaccgc
    22021 aattaattgg ccagcaccac attatgggaa aactcttttt cacagtattt gcatttgagc
    22081 gcgatgtcat tggcgcgttt tcgcacggca aagctggatg aaaccggttc ggcatggctg
    22141 atacagttgc tgttcgggca gaccaacaca ttgtcgatgc gctctggcag actggggcgc
    22201 gatttaccca ccacttcata gttgtcgata cggttaaccg tggcttgcgg cgcatacaat
    22261 gccagttgat ctacctgatc ttcactcaaa aaggtatttt cgattttgat cagatctttg
    22321 cggcccatct cgccagaagg caggttcaga ccaatggtga tgcgctgatc cgtttcggtc
    22381 agcttgaaca gactcaacag cttaaaaccg atctgggcgg ggatatggtc aattactgtg
    22441 ccgcgtttaa tagcttcaac ctgcaattta ttatcgtgtg tcatctctat ttccccttac
    22501 agtaccagat cgcgattcag aaccagtgcc agtaacgcct ggcgagcgaa aatcccgttg
    22561 cctgcctgct ggaagtacca ggcgtgtggc gttttatcaa catccgtcgc aatttcatca
    22621 acacgcggca gcggatgcag tactttcata ttggctttgg cgttgtggag atcgctggcg
    22681 cgaagaacaa actgcgcttt cacgttggcg tattcggatg ggtccaggcg ctctttttgc
    22741 acgcgggtca tatacaggat gtctacttcc gccatcactt cttcaataga gctgtgcaga
    22801 ctccatgcga tccctttttc atcgagcata tccagaatgt attgcggcat tgccagcgcg
    22861 tccggcgcga tgaagtaaaa acggttgccg tcgaacttcg ctaacgcctg agtcagggag
    22921 tgaacggtgc ggccatattt caggtcacca accattgcga cgtggagatt gtccagacgc
    22981 ccctgggttt cctgaatagt gaataagtcc agcaaggttt gcgtcggatg ttggttggag
    23041 ccatcaccgg cattcagtac cggtacattg ccggaaaact cggtggccag gcgcgccgca
    23101 ccttcctgcg gatgacgcat cactatcgca tcgacgtaag tgctgataac cgaaatggta
    23161 tcggccagcg tttcgccctt tttacccagt gatgtattgg cgctgtcgga gaagcccacc
    23221 acgctggcac ccaggcggtg catggaagtt tcgaaagaga ggcgggtacg ggtagaggct
    23281 tcgaagaagc agctggcaat gactttgtgc ttcaacagct ctggttgcgg gtttgctttc
    23341 agttttgccg ctgttgccag caccagatta aggtcatcgc gactaaggtc gtttatggaa
    23401 atgatatgtt tctgatatag cggattagcc atcttttatc tcctgacgcc tgggcaaaaa
    23461 aaagcccctc gattgagggg ctgggaatgg gtgatcaacg ggaagaaaaa cggcaggcca
    23521 gcgtcttttt tcagacgcgg taagacaaaa tgtcgaacac actgaaccat acatcctccc
    23581 ggcaaattgt ccggcattat actcatcgtc agaagcggtg caagcaattg atgcaatatt
    23641 ttgtcagcgc aaacggttta tttgaattta aagttaaaat atatgcattt ttatttactg
    23701 tgattctggg gggaactgtc gttcggtatc aataattgca gacatttcct gcttttttct
    23761 ttttcacttt cacgcaatca gatatgcatt ttattccatt catccgactt atagggcgga
    23821 gtgtgaaaac gaacggctag cactattgct tagagctcag ggatgcgcgc tatcacttta
    23881 atttcaaaat caaagcctgc cagccatgta acgcccaccg ccgtccaggt tggataagat
    23941 ggcgcgctaa atatttcatt tttcaccgtc atgatgtctt caaattgttt ttctggatcg
    24001 gtatgaaagc tcgtaacatc aatgatatcg tcaaaagtgc atcccgcagc tgccagggtc
    24061 gcatgcaaat tatcaaaggc cagtctgact tgttgctgaa aatcgggttc tggtgttccg
    24121 tcctctcgac ttcctacttg cccggaaaca aacagcaaat cgccggaacg aatagccgca
    24181 gaataacgat gctcagcata cagtgaatgt cgtccagcag ggaaaacagc ggttctttct
    24241 accatttggt tatcctcaag atttacgaca tgaacagaag atttatattt accaggagcc
    24301 gcttttagcg gacgacgtga gtaaacaaaa cccagacatc atgggaaatg gctgggctta
    24361 attgagcgta gtcggttatg cgccaaacgc gccatcaatg gtatgcatcg cgccggtaac
    24421 aaaactggct tctggccctg ctaaccatgc gaccatacca gcgacctctt ccggttgccc
    24481 atgtcttttg atggccataa aactatgcga catatcgcgc attggcccgt tggcgggatt
    24541 agcgtcggta tcaattggcc ctggctggac gacgttgatg gtgatcccac gcggtccgaa
    24601 atcacgggcc agcccgcgcg ccatgccttg cagggcagat ttactggcgg cataagcagc
    24661 catgcctgca acaggcatac gatcgccatt cacggagccg atgattaaga tgcgtccgcc
    24721 ttcgggcatc tgccgggcgg cttcaacaga ggcatggtaa ggagcatgaa tattgatttt
    24781 gaaaaggcga tcaatatcgt cggcatttaa ttccagggca tcgccaaaga cgccaatacc
    24841 tgcatttacc accaggatat ccaatgcgcc gctcttacga acgacatcaa taacagcgtc
    24901 tttgtcagca ctatctgtga atactgctgt cgctccagtc tcttgtgcca ggcgttcagc
    24961 ggcatctttc gaccccgcat aggtgaatcg tacattggcc ccatcggtga cgaaacgacg
    25021 tacgatagcg gcaccgattc cacggctacc accgaggatg agaactgtct tacctgtaaa
    25081 agcgcccata aggactcctt gatttattat gtaacatgca ttacaaaact gttttaactt
    25141 tctgtcaaca agttttgtaa tggtcactaa aaaacaatct cgcgttccag gtcgtcccag
    25201 acgtttcgct cctgagcagg cagtctctgc ggcaaaagtg ctttttcacc aaaaaggttt
    25261 cgatgctgtc agtgttgctg aagttactga ttatcttggt attaaccccc cgagcctcta
    25321 cgcggctttt ggcaataagg ctgggttatt tagccgtgta ctcaatgaat atgtcggtac
    25381 ggaagctatt ccgcttgccg atattcttcg tgatgatcgt ccggtagggg agtgcctggc
    25441 tgaggtatta aaagaagcgg cgcgccgata tagccaaaac ggcggctgcg ctggctgtat
    25501 ggttcttgaa ggcattcata gtcatgatcc acaagcgcgt gatattgccg ttcaatatta
    25561 tcacgccgca gaaacgacca tttatgacta tatcgccagg cggcatccac aaagcgcaca
    25621 atgtgtgact gattttatga gtaccgtgat gtcagggctt tctgcgaagg cacgggaggg
    25681 gcactccatc gaacaactct gtgcaacagc tgcactggcg ggggaagcga taaaaactat
    25741 tctcaaggag tgatgcgggc cttgacccga aaggcgggaa cgcgcctgcc gataagttgt
    25801 gataagacaa taattcacgc gttaaggcta gcggaattga tcatcttttc gtataacgat
    25861 ggaaatgaaa cgttgtttta attaaggagt ggaaaagatg atcatcggaa atattcataa
    25921 tcttcagccg tggctacccc aggagttacg ccaggcgatt gagcatatca aagcacacgt
    25981 tacggcagaa acgccaaagg gcaagcacga tatcgaaggc aatcgtctgt tttatcttat
    26041 ctcggaagat atgaccgagc cgcacgaagc tcgccgtgcg gagtaccatg cccgctatct
    26101 cgacattcag attgtgttaa aaggtcagga aggcatgacc ttcagcacgc aacctgcagg
    26161 caccccggat accgactggt tagctgataa agacatcgca tttttgccgg aaggcgttga
    26221 tgagaaaaca gttatcctta atgaaggtga ttttgttgtg ttttatccgg gggaagtgca
    26281 taaaccgctg tgcgcagtgg gcgcgccagc ccgggttcgc aaagcagtag tgaagatgct
    26341 gatggcgtga tgacttttcg ccgtaaataa ctccaggttt acggcgagtt tgtgaaaaga
    26401 gcgttttttg atattttttt gtgagtaaaa tttgtaatgc ttagacgttc ttattaactc
    26461 aaggagttcg tcatgagcaa aatatcagat ttgaattatt ctcaacacat tacattagcc
    26521 gacaatttta aacaaaaaag tgaagtttta aatacctggc gtgttggaat gaataatttt
    26581 gcccgtaatg ccgaggggca ggataacaca agaaatatcc ttgatcctaa gacatttttg
    26641 gaatttttgg taaaaatatt tactctaggt tatgtggatt ttagcaaacg ctccaacgaa
    26701 gcgggaagaa atatgatggc tcatattgag tcctcatctt atatcaaaaa taatgatggc
    26761 agtgagataa taaagtttgt tatgaataat cctgaagggg aacgagcgga tttatctaag
    26821 gtggaaatag aaatcacact ttccactttc actactatgg ggactcgtca aggacatacg
    26881 gctattatat ttcaacaacc tgatggttcg actaatcgtt atgaaggaaa gtcctttgaa
    26941 agaaaagatg agagttcatt acacctgatt actaacaaga ttctggcatg ttaccaacgc
    27001 gaagctaaca aggaaatagc tcgtctatta aatatttcac aggagttaaa taattctcag
    27061 gacttgaata actcgcaggt gagttgtaaa gattcagttg attctacgat tacggattta
    27121 ttagaaaaac cattgaataa tgcattatta gcaataagga aagaacatct gctattaatg
    27181 ccttatgtat gtaatgaatc gatttcatac ttgcttggtg aaaaagggat actgaaagaa
    27241 atagatgacc ttaacgcagt aaataattat cttcttaata ataagaaagc tactgacaat
    27301 gaaattaatg acatcaaagt taacctgtct catattctta ttgattcctt agatgatgca
    27361 aaagttaacc ttacaccggt catcgattct ggatgacttt tttaaaatcc ccatatatta
    27421 atgatgtaag aatactggat tggtgtttta ataaaagaat gcaatatttt ggtgattctg
    27481 aaaagataaa gtatgcatgc tccgtgataa atcatattga ttttagccgc gatcaatcta
    27541 aagattttag ctgcgatcaa tctaaaatta aaatagctga gaccttattt ttcaatctcg
    27601 ataaagaacc ctataaaaat
//
LOCUS       DAJVUP010000038        27491 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.038, whole genome shotgun sequence.
ACCESSION   DAJVUP010000038 DAJVUP010000000
VERSION     DAJVUP010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27491
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.038"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            74..505
                     /locus_tag="OQQ75_001508"
     CDS             74..505
                     /locus_tag="OQQ75_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975883.1"
                     /translation="MTMNLHTPTTAPKAAPATSVSPLEQSGSPKTKFPEIKTVKTAVV
                     KLISDIEGNLDQRLVYREAVEGLCQEAANRITQCMHSRSTGQTLRDLRELLSVTLDTI
                     IVVEFEGEQTRLNYGGRSAEDVIAMLKALHLEGRKAWLEVE"
     gene            complement(537..1064)
                     /locus_tag="OQQ75_001509"
     CDS             complement(537..1064)
                     /locus_tag="OQQ75_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HCS1975884.1"
                     /translation="MRKTTLLVLAAALCVPAFATAAPVLTAGFSPSDGRPALEIVLGA
                     INNARQSIDVAAYSFTSKPVATALAGANRRGVAVRVVADEKANSDRYTAVTYLINQGV
                     PVHLNGRYAIMHNKFMVIDGKNVQTGSFNYTASAVSRNAENVLLIEDAPQLAEAYQRE
                     FNRLWDEGIPLNALY"
     gene            complement(1057..1803)
                     /locus_tag="OQQ75_001510"
     CDS             complement(1057..1803)
                     /locus_tag="OQQ75_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein MobC"
                     /protein_id="HCS1975885.1"
                     /translation="MLISSYQERYARSTEKIRVLLNFLKEETYSDFQIIKLLFDFKSD
                     RPLYRLLEKVEKMGLIQKHVHESRASRISLWGITTDGLAVILTADDNIMPARFEPYRL
                     TGWSLDHHLDNQLVRLTLEKNGATGWINGDRSTFLSQYSVKHRPDGLISLPDGRLIAV
                     ETERRIKTKARYQSIMASHLLAISDKKWRYAFYVAPDEAKKRALKIIFDSIASVIVKN
                     QHVQLEAKHRDVFRFYTLDELKNLELDNYA"
     gene            complement(1818..3725)
                     /locus_tag="OQQ75_001511"
     CDS             complement(1818..3725)
                     /locus_tag="OQQ75_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraM recognition domain-containing protein"
                     /protein_id="HCS1975886.1"
                     /translation="MIFDKLNHLLSPIANAVLAFIAFLQAHQLALALLSGVMLPFIFS
                     AKHGGQEKPTFLQRILILLSMICFVFGSIAPVAVWFLQRIYGREDIASPPLLTWTMAL
                     LFTVAGFILHVVLRRLISPEFDKVKCGMVKKTSMERDRRTDVRRVKEILPVTTEYDPM
                     DYIDLNKGIFIGLSREGEPQYIPLKEWQTQHADIIGTTGAGKGVVTGILLYQSILADE
                     GVFVLDPKNDEWAPHLYKKACADAGKPFVLIDLNKQEYQMNLIDGITADHLEELFVAG
                     FSLAEKGEAADFYRIDDRKAARTAAQFVKDNPGATVRDIYNGDYVQGIGETIKAFHGK
                     TEELAMLNSINAPGGFALKEIFDKGGCCYIIGSMRNSKIITAQRMILVRLFQLAELRD
                     RVAGNIRPIAIFKDEVKYHLSKPALEGLGAARDKGVHILMAHQSIADLRDCPADLNGD
                     AVVGAVVENCKFKLVYKLQDPDTAEWIARMSGTILVDDESRKVTTTAVLTEKVDNERM
                     LRQAESYYIDSNMLQNLPKFVSYIFSQNALAFPSLISPLKVKKAPLELFTLPPVAVAT
                     VAEVKPVLDLDFDKTAPAVPAPDIIPVSATTTKKPSATPIPTPPVQPDEEWLMASQPA
                     PNDEIHSLLDL"
     gene            complement(4434..4826)
                     /locus_tag="OQQ75_001512"
     CDS             complement(4434..4826)
                     /locus_tag="OQQ75_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HCS1975887.1"
                     /translation="MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEH
                     IEQEKLRRQREEKRNELLALIESEGFSPTELVSTTPAKKSAKRKAKYQYFENGVHKKW
                     SGVGRVPVVIQQELDAGKPLESFLITTD"
     gene            complement(4823..7024)
                     /locus_tag="OQQ75_001513"
     CDS             complement(4823..7024)
                     /locus_tag="OQQ75_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001241818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase C-terminal repeat-containing
                     protein"
                     /protein_id="HCS1975888.1"
                     /translation="MRLWIAEKPAVASDIAKALGGNFTRHDGYAESATDIVSYCVGHV
                     LEMVPPETINPAYATWSLDTLPLKLYPVQLQPKASVAKQANTLVKLIRRPDIKMVVHC
                     GDPDDEGQLLVDEVLEFAGNTAPVKRALINDNTAPAVKKAINSLRDNSDFRGMYLKAL
                     MRSAGDAIFGFSMSRCYTLKARDKGYKGTISVGRVQTPVLGMIVRRWRDNQAHSEAFY
                     YQLAGQFISGTDVVCARWQTSEYAPVDDKKRLTDKAWGEGLARALAGKPASVLAAATD
                     RGKTTAAPLPFNLLRLQVYMNRRHKLTAQQTLDITQKLKDSKYITYNRSDCSYLSDEQ
                     FNDAPQVVAALKTLDVFNGLTTDTAQKSAAFDSKKVTAHTAIIPTTNMPDLSRLTDKE
                     KAVYLTIAQFYLAQFVAKKRYDESIAEIKCGDEMFKVSARKITDAGFTTFLNDAEEDD
                     EEDENSTSFEAISRLQTGATLTCREVVISEKKTKPLPLFTEATLLAALVRVADFVADP
                     RIKKLLKEKDKDKKDEHGGIGTPATRAAIIETLKTRDYITVEKGKFIPTAAGLALIDA
                     LPDSVTQPDMTAVWAEKQAAVETGEMTIERFIDGLYAEVSRLVESADIAISATEKHPV
                     KTALNRLAVKCPSCGSELVMTPKTCACTGCQFKIWLEVRGKKLTEKQAEKLIGKGKTD
                     VIKGFKSKKNDDTYSMIVTLKNAQTGELGFEYPPRDPLKGLNVSMPKELKL"
     gene            complement(7021..7329)
                     /locus_tag="OQQ75_001514"
     CDS             complement(7021..7329)
                     /locus_tag="OQQ75_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000212005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975889.1"
                     /translation="MATKTGFIAPPWPHVRGDSVSAASLISRIEKEAHRGCGLHYEIY
                     QYRALCELHDVLTSLSVRDAETFMTVAADHGFSLSDNDFQESRMMYFETMDEIRRDQE
                     "
     gene            complement(7305..7640)
                     /locus_tag="OQQ75_001515"
     CDS             complement(7305..7640)
                     /locus_tag="OQQ75_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000610141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975890.1"
                     /translation="MINQTVSINNFSGLLKDEELPAGDLQTVLLVLSEISQKQDHFQA
                     NTSELVQLAAQHSPTFQALPAERQSFFRSVLSMPVFFYTVPLSDDEAAEWEKLNDKDA
                     LQWQQKPDL"
     gene            complement(7667..7984)
                     /locus_tag="OQQ75_001516"
     CDS             complement(7667..7984)
                     /locus_tag="OQQ75_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000683352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975891.1"
                     /translation="MKHTVITAALLCALTSPAFAADGQNADPNDPCAMVLCLAGKLDG
                     SSPAECDPMYKNFMSIKKKKKGSFLPDHTAAARQKKLSACPSADSAIVGKIISKFGRM
                     NGW"
     gene            complement(8075..8476)
                     /locus_tag="OQQ75_001517"
     CDS             complement(8075..8476)
                     /locus_tag="OQQ75_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975892.1"
                     /translation="MMLPKLTGLTAIVVLLAGCSSPPEPAAVDWSQPAQPVTTTRPVW
                     EPNRLIVASPVTEGHWSQVLTRFEPGGIYPAAQWYAVAHASRAVVNAPDGQRFFAAKT
                     WLREGGYKGVVEFRPRSGCLTCDTSEIVFYR"
     gene            complement(8463..9512)
                     /gene="virB11"
                     /locus_tag="OQQ75_001518"
     CDS             complement(8463..9512)
                     /gene="virB11"
                     /locus_tag="OQQ75_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000342114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HCS1975893.1"
                     /translation="MDDKLTDTPSEGNVALSHLRDLLFGDYLSREGLTEIAINRPGEL
                     HTKINGAWEMHASPVTLRQCSSFARALAVWNNDTIDETSPILSATLPTGERCQIVVPP
                     ACERNTISITLRKPDYFQRTHQSYIDAGFYDRVQGTEKVESKDGELSRIYLSGNIPLF
                     MEKCVEYGKTLFVVGETGSGKTTYMKMLLHYIPETLRLITIEDNPELKFYSQKNYVHL
                     FYPADAGEGAIVTSDRLVRAIYRMNPDRPLLAEVRGREAWDALKLIESGHEGFMSSLH
                     AGSPRECISGLIDRCYEHPACRGMPVDVLLRKVLHCVDVIVSVDVHGNVRRMSDVYFK
                     PLHMQAMKESFNDAA"
     gene            complement(9516..10712)
                     /locus_tag="OQQ75_001519"
     CDS             complement(9516..10712)
                     /locus_tag="OQQ75_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000980841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HCS1975894.1"
                     /translation="MMNEQEDIKTAAELEAEARERARAEIDGDKPAAGAVPPGQPQVV
                     QHAKRRSRRSLVLAAISLVLLVIIATGGDYLMAKLKGDGSGKSASHEPESHATSPARE
                     RNNLGRDLNPLGQLADTTGQEKTTPTDTAAPPQASPPPLTFDKVSALADSAPTTASSA
                     PKSTSSSNVSPAGSASAPGSATPAGQSQDNGLARITGVKRLGLDPDLYIPADRHIPCA
                     MMQRFVSDVGGRFNCLISEDIYSASNAVRLIPAGTEARGLYRTGTLKNGQGRLFLAIT
                     ELRTPEPGRLVIPMVDSQAVGALGENGVAGWIDNHWLERIGNTLLLGTVQDFAAAASG
                     SSPGKDRNTDYTENTRAATAEMAKTLLENSINIPPTMYLNQGDVIGLVTGADIDFSDV
                     YRLRMR"
     gene            complement(10709..11602)
                     /gene="virB9"
                     /locus_tag="OQQ75_001520"
     CDS             complement(10709..11602)
                     /gene="virB9"
                     /locus_tag="OQQ75_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001045307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HCS1975895.1"
                     /translation="MNKVLMCALLLTAASAWGAATPRGSAYDSRMQNIPYNSQNTTVI
                     NTRAGYITTLVFDADEEVITATAGFPQGWTITPDRNRVGISPAPVKQPVTDADGKTVQ
                     KIFTPTQQDWQTNLFVTTTKRDYSLMLNVIDNDREAGNLAFVVRFSYPDDTRRQNDAA
                     RLARQQELQAAQEKERIQFALKKSTAPRNWNYTRRVAAGSESITPDFAYDDGRFTYLG
                     FSPQKLIPSPTVIVGGSEQVITPTFSTEGNYRVMVLRSLSPRFVLRYGSQVVGIENGS
                     YGKVTVANGSTVSPDVKLESK"
     gene            complement(11595..12281)
                     /locus_tag="OQQ75_001521"
     CDS             complement(11595..12281)
                     /locus_tag="OQQ75_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001293055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1975896.1"
                     /translation="MSELTAKALSDSRSFENAILERDMRMKKAGWIVAALAGLLLVFA
                     LAALILLLPLKTTTVELYTLDRQTGRIERVTTVGEDKLDTSEVLNLSQTASYVKRREG
                     YNYFALQQDYRETQMFNSDEVNKEYLDWFNSPDAPDAVFQQAAYVVTVEVLSNVPSEG
                     TGSSMVEMLRIKRTIRKVKDNTETYDYWTVRMTYRYFPQKKMTASEREVNPFGFIVTS
                     YQRFKEKSDE"
     gene            complement(12274..12414)
                     /locus_tag="OQQ75_001522"
     CDS             complement(12274..12414)
                     /locus_tag="OQQ75_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000873539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975897.1"
                     /translation="MKYGITLLMLCLLAGCAQRNTQLPPVSGNPEPVNSPAIIQELTP
                     HV"
     gene            complement(12491..13498)
                     /locus_tag="OQQ75_001523"
     CDS             complement(12491..13498)
                     /locus_tag="OQQ75_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1975898.1"
                     /translation="MSGIFVGLNSHIMEGFDSVLTSVAADTGGWMAHLFSIAVLSLYI
                     TWRAYQTMAGKLVRPFEEIVWDVSRMLIIMIFVTNAGGYLDLVSDAITGLRDGFSGDA
                     SIWARLDTVWEKAQALGEKLYSYDDSTYVALKGTLAQFLVWAGVMLLVGITAIINLIA
                     ELVMLLMLATAPIFIYCLMWSWFRDMFSNWLRIILGCILTSLFSGIALTVVMDYLDYI
                     LAGATKASDANYLTLAVQVFLGTAGAAAVMVLTYKLAEALAGASAQGAAQALAASGVG
                     SARQSASSAAGAVGDKASQNLNSTGSATASSASTASRATGDARSRSRAAVQRMQERYQ
                     R"
     gene            complement(13516..13800)
                     /locus_tag="OQQ75_001524"
     CDS             complement(13516..13800)
                     /locus_tag="OQQ75_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HCS1975899.1"
                     /translation="MKLKTLTFIVLASVAALTGCEDKTSVDWYMAHHDDMLAKYRECI
                     FNHNFVPTDCQNARSALHREKAKPDVAEGYKQILKDLDKARVQEPIADLN"
     gene            complement(13812..14528)
                     /locus_tag="OQQ75_001525"
     CDS             complement(13812..14528)
                     /locus_tag="OQQ75_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000770034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1975900.1"
                     /translation="MKLKTTLTALTVALCLFHVPAQAGIPVFDEVANASNIQQWAEKL
                     QQWQQTVQHYQSQMNAYKQQLATATGIRDVQAFLNQAKNLTADIKNLKNRGISLNDLL
                     TGSGGSYAGELNRLYDKYKLFDNCPENASEAYRDSCKQMLLNQAVSVEDTSDIQEKIS
                     DTLSDISNLASRIENAKDSKESQDLANVVSARSIQLNALTTQWEMSVKQSEMRNQLLA
                     EQRRKAQAEQMRTAPIADLN"
     gene            complement(14547..17297)
                     /locus_tag="OQQ75_001526"
     CDS             complement(14547..17297)
                     /locus_tag="OQQ75_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000153996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HCS1975901.1"
                     /translation="MTILNKALTRPAALWGVPLVPLLFTLCILTLAAVWSRFYWLLLL
                     LIPAFIELRRLAKEDIHFFDLKLLAFKTRGNRAATRHFGTKALVANQYDAIDVTEFIK
                     HMRLNESIPLSRYLPWSSHLHEQVVKNKKGDFVSTWEIGGIIFECEDEHYLATLDMQL
                     NNVIRSFEGLPVTFYTHLVSDEFTDTLECESGIPFSDEIARLFYASREGKPFYQRRLF
                     FTVCFNPHTGIERATMKQKSLGERKTLLDNALQVMQEHRQAIGTALSRYAARPLGTYE
                     ENGHVFSSQLAFYNFLITGRWQKVRVTRTPFYDVLGGTDIFPSTDIGQVSHTDGQSYF
                     RGLEIKDYSTETITGLYDSLLYARCRYVFTQSYTCMGKDEARGCIRTIEKRLKSAEDD
                     AISQQEDLKVARDMLQSGIISFGKYHQTLIVSAPTSEQVIRDTNTLADTLKDLGFIMT
                     LSRESLSAAYLAQLPGVYHLRPRLVPVSSLNYAEMVSFHNFHPHKRDGNAWGEAIAVV
                     PTPSGGCQYVNLHNSQADVDEFSEKPPGNTMLLGSTGTGKSTLLMMFQHLMQKYRRPE
                     SFAPGATKKRFTSVVFDKDRSAEMSIRLQGGSYFRFRSGEKTGLNPFALAPTKRNRNF
                     LKKLMRMMCTRDGKPLDPRDEERLSEAVDTIMLDYPPELRRNGITRMLEVLHEAPTKD
                     ARMNGLRIRLQQWAQGGEFGWVFDNDVDTFDIDNIDNFGIDGTEFLNDKDVRSPLTFY
                     LLYRVTSLLDGRRLVIFMDEFWKWLQDPEFSKFALDMLKVIRKLNGIFFPATQSPEEM
                     CKHEISAAIIEQCSTRIFMANQQAKEYDYVDMLRVPKAVYDIVTTLDPYARQMVIMKS
                     PLRRGDVRPYIAQITLDLSGLGRYTKLLSASADNLKIFDEIWQEGMKPEDWKDEMLRR
                     AV"
     gene            complement(17307..17606)
                     /locus_tag="OQQ75_001527"
     CDS             complement(17307..17606)
                     /locus_tag="OQQ75_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HCS1975902.1"
                     /translation="MTLRTIKTAATRLIAAFSALSAVPAMAASADQAFQKGSDAINWV
                     FLGLTGMSVVTISCAVAFIAYKMLVDGKAWHDLQRVFWAGVLLAGASGFGAYFAA"
     gene            complement(17617..18279)
                     /locus_tag="OQQ75_001528"
     CDS             complement(17617..18279)
                     /locus_tag="OQQ75_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS1975903.1"
                     /translation="MLTTAALFQLAMQCAPAVHPDTIHDITRTESGLNPYAIAEIVPV
                     KGGRSRVISHLPSSKDEALKIVEAIKQKKHRYSVGLMQITSTNFPQFGVSAESMFNPC
                     DNMTVAAKIITDCYQRGGTLQRALSCYYSGNFETGQRPESAFGNTSYVQRIGYVVPST
                     RAEQQTASPSSGEAPAVPSDNTVYPDSVIRGVIPAPDTTPTSIAAYPPHVVRGGLAVS
                     SD"
     gene            complement(18282..18497)
                     /locus_tag="OQQ75_001529"
     CDS             complement(18282..18497)
                     /locus_tag="OQQ75_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975904.1"
                     /translation="MPDITPAPASLLEAVFTPMTEYTHNVYSVKGDRLAMTLTKIGVA
                     QANSQGDIQLFINPDCATGKVLLYRKD"
     gene            complement(18490..18798)
                     /locus_tag="OQQ75_001530"
     CDS             complement(18490..18798)
                     /locus_tag="OQQ75_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975905.1"
                     /translation="MSMQTVRRKALRQNPYSTLGKPPLRSSRDRITRAINGTWSLREL
                     PDNVRELLIERAALRAEITTLTVKAQGLKKSDVSVLIADRLRRIDAITSLLENRKCNA
                     "
     gene            19112..20026
                     /locus_tag="OQQ75_001531"
     CDS             19112..20026
                     /locus_tag="OQQ75_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000891983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HCS1975906.1"
                     /translation="MLEMFEKIEKKYWQDKIKKISKFRVIKMQDLDDAKVIEVLAKVL
                     TKKGISKVKHNSYISKVLQITTSAGYKKLNGATKWEVQQLIKVVQSVGMDMIEFFRIY
                     YEDNKEIQDAIWNDGRSEHSCKVCLYPEGSEVNTEYSALKVADQWNIFPTNDLKDELL
                     YESKRSIESIVINPKVISSTKYRIALLDDDANITESLKEILSNDYYQVDTYDNLKKLT
                     QAVATNPYDAYVLDWIIGDETSFKLVKAIRSSKNKNAMIIVLTGQLSGIKDDEIVKSI
                     HDYDIVGPYEKPIKSGIIKSNIEKYFAR"
     gene            20030..21013
                     /locus_tag="OQQ75_001532"
     CDS             20030..21013
                     /locus_tag="OQQ75_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975907.1"
                     /translation="MRNLLEYSGSLISNDSLIVAPYDCQKLSYENILPLNNSLIKNWN
                     IQKFSSDYSEIEHLNVINGMGVTLGDSIVGISVLSAIKKKNPKIKIKLIRPETAPSYV
                     EELYELASSVIDELHYMPFHIQKLPCTALNIDVGNQLYSPDFHIMEMHDYFIQGLGVK
                     LDDVNHNELSNKWLGNIDLGAPVFENYTLFAPIASTKIRSIPSKFYYDIVDMLSRREG
                     KTVLGFVDVNHKNYINISKYSPHTKDFIALIKYASNVYTCDSSALHIAAGFGVPTECV
                     FNTIPPELRTKYYSKCKSIYVGNKRLEKIQSSEDFQLVKMVENNYREYLYG"
     gene            21006..21494
                     /locus_tag="OQQ75_001533"
     CDS             21006..21494
                     /locus_tag="OQQ75_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000238872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HCS1975908.1"
                     /translation="MVKIISFLSLMLLSISAYSNIGDIVIDGSIANANSDKGYVITEK
                     QFDSFPRDTIVTTTPWTPTGKKVKFKGVDLSYVLKLAGANGAKLKFHALNDYEIIVDM
                     NDVEKYNILLATEMDGKRLQIRDFGPYFLVYPLDEHYIELNTPHYLARFIWQIDKITV
                     LK"
     gene            21491..23209
                     /locus_tag="OQQ75_001534"
     CDS             21491..23209
                     /locus_tag="OQQ75_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HCS1975909.1"
                     /translation="MKKNFFIILVALLLLIAFTVSSVVKYTSLLSEKNLYTVAGTQEN
                     YGFSVAKFIIQLNELYTLINSDNTIDDVRLKFDILYSRLNVIYVKSEATAPLYKQQGY
                     EETIDSINKKLEDIDGLLSHNHPDYKKISTIIADIKPLTKTVTNLADMAEIAQRNDAL
                     KDFRSKRQQLWTLLFITGGLISLLLFVLFIYISKINRLLLSERAAFASKNAFLGMVGH
                     ELRTSLQAIVSIIDVVTNNLSGGIKSGQIERLETAVSKMERQLNDLAEFAKIDNGSVE
                     IKNTYNSLQAIVTNAVQDCIAIYEKKDVTVKIKNNNDAVIFTDALRLNQVIENLTSNA
                     IKYTERGEVNVDYFIEKGKVLNIVISDTGKGIPKDKLKFIFKPFTRVVDSKSTVPGFG
                     MGLAIVAGIIRLLKGTIHISSEVNVGTTVTVRIPIKLGDSSLATAEVSASAPGDVFGV
                     LSLLVIDDNEMACSSLSSLLTNAGYIVEATTSPERALEKLLRKPYDVVLSDLQMPGMT
                     GDELYATVSSSQNPNRSTPFIFISAYSDAHSIGQAPLLTKPVRLKDINLKIHEVMSNQ
                     GRVKSE"
     gene            complement(24068..24425)
                     /locus_tag="OQQ75_001535"
                     /pseudo
     CDS             complement(24068..24425)
                     /locus_tag="OQQ75_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            24617..25594
                     /locus_tag="OQQ75_001536"
     CDS             24617..25594
                     /locus_tag="OQQ75_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000600827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1975910.1"
                     /translation="MILIPDDEPELSLPAASEEFLPALSGENAPVSPARAYLLSLNSH
                     RSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDTGRATATVNTYLSA
                     LKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPSGRALPQGEIRALFAVCEADRSCL
                     GARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVPAGAWQRL
                     QIWIDEIRGETPGPLFTRIRRFGDVTLNRLTDQAVYHILQVRQGQAGITKCSPHDLRR
                     TFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDRLNLI"
     gene            complement(25642..25905)
                     /locus_tag="OQQ75_001537"
     CDS             complement(25642..25905)
                     /locus_tag="OQQ75_001537"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1975911.1"
                     /translation="MLPEQHAAEARYPIPVEDFHFSIFTAVNNQTVMTSSAEIVLVIE
                     GTATLSHASGESLLLHVGLSAFIPASIGRWLLTTTGKVCRVSC"
     gene            complement(25940..>27491)
                     /locus_tag="OQQ75_001538"
     CDS             complement(25940..>27491)
                     /locus_tag="OQQ75_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Tn3-like element TnAs1 family transposase"
                     /protein_id="HCS1975912.1"
                     /translation="DIWVKGSRQFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYL
                     EERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLP
                     RIKITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPG
                     LTYAKLSWLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRG
                     ESTGHVNPKYGSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIE
                     EHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQAYPTLRPLIGGTLNI
                     KHVRAHWDDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILD
                     WLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAI
                     VLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFR
                     PLRMPGKP"
BASE COUNT         6111 a         7256 c         7643 g         6481 t
ORIGIN      
        1 accagaacga ctccgggcag gccgaaccgt caggcgatac gaagacgaaa ttcacactga
       61 cggagaaacg accatgacga tgaacctgca caccccgaca accgccccta aagctgcacc
      121 ggcgaccagc gtatccccgc tggagcagtc aggctcccca aaaacgaaat ttcctgaaat
      181 caaaaccgtc aaaacggcgg tggttaaact gatcagcgac atcgagggca acctcgatca
      241 gcgtctggta tatcgcgagg ccgtagaggg attgtgccag gaggcggcca accggataac
      301 ccagtgcatg cattcacgca gtacagggca gacgctacgt gatctccgcg agctgctgtc
      361 ggtgacgctg gacaccatta tcgtggtgga gtttgaaggg gagcagaccc gtctcaacta
      421 tggcggacgt tcagcagaag acgtgatcgc catgctgaaa gcgctgcatc ttgaaggacg
      481 caaagcctgg ctggaagtgg agtaaaaaaa aagccccgtc cgcagacggg gctgattcag
      541 tacagggcat tcagcgggat gccctcatcc cacaggcggt taaattctcg ctggtacgcc
      601 tccgccagct gcggcgcatc ctcgatcagc agcacgtttt ccgcgttgcg cgaaacggcg
      661 cttgccgtgt agttaaacga cccggtctgg acgtttttgc cgtcgatcac cataaacttg
      721 ttgtgcatga tggcgtaacg gccgttaagg tgcaccggca cgccctggtt tatcagatac
      781 gtcacggcgg tgtagcggtc gctgttcgcc ttttcgtcgg ccaccacgcg cacggccacg
      841 ccgcgccggt tagcaccggc gagcgccgtc gcgaccggct tactggtgaa gctgtaggcc
      901 gcgacgtcaa tgctctgcct ggcgttgttt atggcgccga gcacgatttc aagagcaggg
      961 cgcccgtcag acggcgaaaa acccgccgtc aggacgggcg cggcggtggc gaacgcgggc
     1021 acgcagaggg cggcggccag caccagaagg gtggttttac gcatagttgt ccagctccag
     1081 gtttttcagt tcatcgaggg tgtaaaagcg gaaaacgtcg cggtgttttg cctccagttg
     1141 cacatgctgg tttttcacga tcacgctggc gatgctgtcg aaaataatct tcagggcgcg
     1201 ctttttcgcc tcgtccgggg cgacgtaaaa cgcgtaccgc cattttttat cgctgatagc
     1261 cagcaggtgg ctcgccatga tggactgata gcgcgccttt gttttgatac gtcgttcggt
     1321 ttcaacggcg atcagcctgc cgtccggcag gctgataagc ccgtcgggac ggtgtttgac
     1381 gctgtactga ctgaggaacg ttgaacggtc gccgttaatc caccctgtcg cgccgttctt
     1441 ctccagcgta aggcgcacta gctggttatc aaggtgatgg tcgagtgacc agccggtcag
     1501 gcggtagggt tcaaagcggg cgggcattat gttgtcgtcc gccgtgagga taacggccag
     1561 cccgtcggtg gtaatgcccc acagggatat tctcgacgcg cgggattcat gcacgtgctt
     1621 ctgaatcagc cccattttct ccaccttctc caacaaccgg tagagagggc ggtcagattt
     1681 aaaatcaaaa agcagcttta tgatttgaaa atcgctgtag gtttcctcct tgagaaaatt
     1741 cagcagtacg cgaatttttt cagtgctgcg tgcataacgt tcctgatacg acgaaataag
     1801 catagaaact ccttatttta taaatccagc aacgaatgta tttcgtcatt tggagcgggc
     1861 tgtgatgcca tcagccactc ctcgtcaggt tgcaccggcg gagtgggtat tggcgttgct
     1921 gagggttttt tggtggttgt tgcgctgacc ggaataatgt caggtgccgg aactgccgga
     1981 gccgttttat caaaatccag atccagcacc ggtttaactt ctgccaccgt agcgactgcg
     2041 accggcggca gggtaaacag ctccagtggg gcttttttaa ccttgagcgg tgagattaac
     2101 gacgggaacg cgagcgcgtt ctggctgaag atatagctga cgaacttcgg caggttctgg
     2161 agcatattgc tgtcgatgta atagctttcc gcctgccgaa gcatgcgctc gttatcgact
     2221 ttttctgtca gcaccgccgt ggtggtgact ttccggcttt catcatcgac taaaatcgtg
     2281 cccgacatgc gcgcaatcca ttcggcggtg tctggatcct gaagtttata taccagctta
     2341 aacttgcagt tttccacaac cgccccaacc acggcgtcgc cgtttaaatc cgccggacag
     2401 tcgcgcaggt cggcaattga ctggtgcgcc attaatatat ggacgccttt atcgcgtgcc
     2461 gcgcctaacc cttcgagcgc cggtttggac aggtgatatt tcacctcgtc cttaaagatg
     2521 gcgatggggc ggatattccc cgcgacgcgg tcgcgcaatt ccgcgagctg gaacaggcga
     2581 actaaaatca tgcgctgcgc ggtaatgatt ttagagttac gcatcgaacc gatgatatag
     2641 cagcagccgc ccttgtcgaa aatctccttc agcgcaaaac cgcctggcgc gttaatgctg
     2701 ttgagcattg ccagctcctc ggttttaccg tgaaaggctt taatcgtctc gccaatgccc
     2761 tgaacataat cgccgttata aatatcccgc acggttgcgc ccggattatc cttcacgaac
     2821 tgcgccgccg ttctcgccgc cttgcggtcg tcgatacggt aaaaatccgc cgcctcgcct
     2881 ttttccgcca gactgaaacc ggccacgaat aattcctcca gatggtcggc ggtgataccg
     2941 tcgataaggt tcatctggta ttcctgttta ttcaggtcga taagcacaaa gggttttccg
     3001 gcgtccgcgc acgctttttt atacaggtgc ggtgcccact cgtcgttttt ggggtcgaga
     3061 acaaaaacgc cctcgtcggc gaggatgctc tgataaagca gaataccggt tacgacgcct
     3121 ttaccggcac cagtggtgcc gataatgtcg gcgtgctggg tctgccattc ttttaacgga
     3181 atatattgcg gctcaccctc gcggctcagc ccgataaaaa tccccttatt cagatcgatg
     3241 taatccatcg gatcgtattc tgtggtgacg ggtaaaattt cttttacccg gcgaacgtcg
     3301 gttctgcggt cgcgctccat gctggttttt ttcaccatgc cgcatttgac cttatcaaat
     3361 tcaggcgaga tcaaacgccg taaaaccacg tgcagaataa aaccggcgac ggtaaacagt
     3421 agcgccattg tccaggtaag cagcggcgga ctggcgatat cttcccggcc ataaatgcgc
     3481 tgtaaaaacc agacggccac tggcgctatc gagccgaaaa caaaacagat catggaaagc
     3541 agaattaaga tcctttgcag aaacgtcggc ttttcctgac cgccgtgttt cgcagaaaat
     3601 ataaaaggca gcatgacgcc ggacagcagc gctaacgcca gttgatgcgc ctgcaaaaag
     3661 gcgataaagg ccaggacggc atttgctatc ggcgacagca aatgattcag tttgtcgaat
     3721 atcacgatat tctccttcac ttaaattcgg tcagcaccat cggtcagtca gaacggtcac
     3781 aggttgtgat cgttctgact gaccgattcc atgctgcaaa agaagtggcc gctaagcggc
     3841 catgatcgca ggaggtacac tcccgcgatc taacggcgtg cggcattacg cgcgggctgg
     3901 acgcccttac tgcatgtcgc atgggggtaa tgtcctggct gaacgcccgg ccaaaacccc
     3961 caaggtcaaa agaggccaca ccgtcgcgcg ctacgcgcga ccacccccta aaagacgcct
     4021 gttttagccc ttttcttcgc cttgttcgtt cctcacaaga tgaattaaag ggaaactagg
     4081 ctttttaggg ggtggtcgcg ccacgctacc ggcttttggc cggagactta ggcacgacgg
     4141 tgtggggggc aagcccccca aataaaccga cgcgtgggcg cgtctttttg ctcgctgggg
     4201 cggcaaaatt tattcggccc cccccggctt ttttcggctc acttggggtg agcgctcaaa
     4261 aagtggaatc ggcgacgcaa attagcaatt tcttcgaaat tgaatttact cgcctcctgc
     4321 cacttcgcag actcaggcgg cctgtcgatt agcaattttt tcaaaattga atcgccatgc
     4381 tcgccagtct tcgaagcccg aaaagccagg tcaaaaccga ccctgtgccg ttgttagtcg
     4441 gtggtaataa ggaaggattc aagaggtttt ccggcgtcaa gttcttgctg aattacaacc
     4501 ggcacgcgtc cgacgcctga ccatttttta tgcacgccgt tttcaaaata ctgatattta
     4561 gctttgcgtt ttgccgactt tttggcggga gttgtactaa ccagctctgt cggtgaaaag
     4621 ccctccgatt caatcagcgc cagcaattca ttgcgctttt cttcccgctg tcggcgtagc
     4681 ttttcctgct cgatatgctc tgcgcgtttt tcatcaagcg ctgctgaaat acgtgcactc
     4741 agcatctcca gaaaggcaaa atcactttca cgtaaaaact ttttcagcgc gcgctctgag
     4801 gttaattcgt cctggatacg gttcataatt tcagctcctt cggcatagat acgttcaatc
     4861 ctttcagcgg atcgcgtggt ggatattcaa aaccgagttc cccggtttgc gcgtttttca
     4921 gcgtgacgat catcgaatag gtgtcgtcgt ttttcttcga tttaaaacct ttaataacgt
     4981 cggttttgcc cttgccgatt aacttctcgg cctgtttttc cgtcagcttt ttgccgcgca
     5041 cttccagcca tattttgaac tgacagcccg tacaggcgca ggttttcggc gtcataacca
     5101 gctcagaacc gcacgacgga catttaaccg cgaggcggtt aagcgccgtt ttaacgggat
     5161 gtttttccgt cgcgctgatg gcaatatcgg cgctctcaac caggcgggaa acttccgcgt
     5221 aaagaccatc aataaagcgc tcgatggtca tttcgccggt ttcaaccgcc gcctgttttt
     5281 cagcccatac ggcggtcata tccggctgcg tcaccgagtc gggcagggca tcaattaacg
     5341 ccagcccggc ggcagttggg ataaatttgc ccttttccac ggtgatgtaa tcgcgggttt
     5401 tcagcgtctc aataatagcc gcgcgggtcg ccggtgtgcc gatgccgccg tgttcatctt
     5461 ttttgtcttt atccttctcc ttgagcaatt ttttaatgcg cggatcggcg acaaaatcgg
     5521 ccacgcgaac gagggcagcg agcagggtcg cctcggtaaa cagcggcagc ggtttagttt
     5581 ttttctccga aatcaccacc tcgcggcagg ttaatgtcgc cccggtttgc aggcggctga
     5641 tggcctcaaa cgaggtgctg ttttcgtcct cctcgtcgtc ttcttccgcg tcgttcagga
     5701 acgtcgtaaa acccgcatcg gtgattttac gcgccgagac tttaaacatc tcgtcaccgc
     5761 atttaatctc cgcgatcgac tcgtcatagc gctttttcgc cacgaactgc gcgagataaa
     5821 actgcgcgat ggtgagataa accgcctttt ccttgtcggt aaggcggctt aaatccggca
     5881 tgttcgtcgt cgggataatg gcggtgtggg cggtgacttt tttactgtca aacgccgcac
     5941 ttttttgcgc cgtgtcggtg gtaaggccgt taaaaacgtc gagcgttttt aaggccgcca
     6001 ccacctgtgg cgcgtcgttg aattgttcat cggacagata agaacagtca gagcggttgt
     6061 aggtaatgta tttactgtcc ttgagcttct gcgtgatatc gagcgtctgc tgcgcggtca
     6121 gtttgtgcct gcggttcata tacacctgga ggcgcagcag gttaaacggc agcggtgcgg
     6181 ccgtggtttt tccccggtcg gtggcggccg cgagcacgct ggccggtttt ccggccagag
     6241 ccctcgcgag tccttccccc caggccttat ccgtcagccg ctttttatcg tccaccggcg
     6301 cgtattcgga cgtctgccag cgggcgcaga caacgtccgt accgctgata aactgccctg
     6361 cgagctggta gtaaaacgcc tcgctgtgcg cctgattgtc gcgccaccgg cgcacaatca
     6421 ttcccagcac cggcgtctgg acgcggccaa ccgaaatcgt gcccttatag cccttatcgc
     6481 gggctttgag ggtgtaacag cggctcatac tgaagccaaa aatcgcgtct cctgcgctgc
     6541 gcatcagggc tttcaggtac atcccacgaa aatcgctgtt atcgcgcagg gagttgatgg
     6601 cttttttcac cgctggcgcg gtgttgtcgt taataagcgc ccgtttcacc ggcgcggtgt
     6661 ttccggcgaa ctccagcacc tcgtcaacca ggagctgccc ctcgtcgtcc gggtcgccgc
     6721 agtggacaac cattttgata tccgggcgcc gaatcagctt caccagggta ttagcctgct
     6781 ttgccacgct cgcttttggc tgaagctgta ccgggtacag cttcagcggc agggtgtcga
     6841 gcgaccaggt ggcgtaggcc gggttgatcg tctccggggg caccatttcc agcacgtggc
     6901 cgacgcagta gctcacgata tcggtcgccg attcggcata gccgtcgtgc cgggtgaagt
     6961 tgccgcccag cgctttcgcg atatcgctcg cgactgcggg tttttctgca atccacagtc
     7021 tcattcttga tctctcctga tttcatccat cgtttcgaag tacatcattc gactttcctg
     7081 aaagtcgtta tcagacagac taaagccatg atccgccgct actgtcatga acgtctcagc
     7141 atcacggacg ctgagactgg tcagaacatc gtgcaattcg cacagggcgc gatattggta
     7201 gatttcgtaa tgcaggccgc agccgcgatg cgcttctttc tcgatgcgag aaatcaggct
     7261 cgcggcacta acggaatcac cacgcacatg cggccacggc ggggctataa atccggtttt
     7321 tgttgccatt ggagtgcatc cttatcgttg agtttttccc attccgccgc ctcgtcgtcg
     7381 ctcagcggaa cggtgtaaaa gaagaccggc atactgagca cggagcggaa gaacgactga
     7441 cgttctgctg gtaatgcctg gaaggtcggc gagtgctgcg cggcgagctg gacgagttcg
     7501 gacgtgttgg cctgaaaatg atcctgtttc tggctgattt ccgacaaaac gagcagcacc
     7561 gtctgcaaat cacctgcagg aagctcctca tctttcagca gcccggaaaa gttattaata
     7621 gaaacggttt gattaatcac gtggtgtctc ctttacggct gccgttttac caaccgttca
     7681 tacggccaaa tttcgagatg atcttgccga caatggcgct gtcagcggac gggcaggcgc
     7741 tcagtttttt ctgccgcgct gcggcggtgt gatcgggtaa aaacgacccc ttttttttct
     7801 ttttgatgct catgaaattt ttgtacatcg ggtcacactc ggcgggactg ctgccgtcga
     7861 gctttccggc caggcacagc accatcgcgc acgggtcatt cgggtcggca ttctggccat
     7921 cggcggcgaa cgccggagaa gtaagggcgc acagcagcgc cgccgtgatt acggtgtgtt
     7981 tcatgatgat ttcctctgaa gggaagcagg gcgctaacgc ccgttggttg ttcaacgtcg
     8041 gtgacggtct gaaggactca gaccgtcacc gacgttatcg gtagaagacg atttctgagg
     8101 tgtcgcaggt caggcagccg gagcgggggc gaaactccac cacacccttg tagccgccct
     8161 cgcggagcca ggttttggcc gcaaagaagc gctggccgtc cggggcattt actaccgcgc
     8221 gcgaggcgtg cgcaaccgcg taccactgtg cggccgggta aatcccgccg ggttcaaaac
     8281 gcgtaagcac ctgcgaccag tgcccttccg tcaccggcga ggccacgata agacggttgg
     8341 gttcccatac cggccgggtg gtcgttaccg gctgcgccgg ttgtgaccag tcaacggccg
     8401 caggctccgg tggcgaagaa cagcccgcca ggaggacgac gatcgccgtc aggccggtca
     8461 gtttaggcag catcattgaa actctccttc atagcctgca tgtgcagggg tttaaaatag
     8521 acgtcgctca tgcggcgcac gttgccgtga acgtccacgc tcacaatgac gtcgacgcag
     8581 tgcagtacct tgcgcagcag cacgtcaacc ggcatgcccc ggcacgccgg atgctcgtag
     8641 cagcggtcaa tcagcccgga gatacactcg cgcgggctgc ccgcgtgcag ggaggacata
     8701 aacccctcgt gcccggactc aatcagcttg agtgcgtccc acgcctcgcg gccacgcacc
     8761 tcggcgagca gggggcggtc ggggttcata cggtaaatcg cgcgcaccag gcgatcagag
     8821 gtgactattg cgccctctcc ggcgtccgcc gggtagaaca gatgaacgta gtttttctgg
     8881 ctgtaaaact tcagctccgg gttgtcctcg atggtgataa ggcgcagcgt ctcgggaatg
     8941 tagtgcagca gcatcttcat gtaggtggtt ttcccagagc ctgtttcccc caccacaaag
     9001 agcgttttgc cgtactccac gcacttttcc ataaaaagcg ggatattccc ggacaggtat
     9061 atgcggctca gctccccgtc ttttgattcc accttttctg taccctgcac ccggtcataa
     9121 aacccggcat cgatatacga ctgatgggtg cgctggaagt agtccggctt acgcagggtg
     9181 attgagatgg tgttacgctc acaggccggg ggcaccacta tctggcagcg ttctcctgta
     9241 gggagcgtgg ccgagaggat aggcgacgtt tcatcaatgg tgtcgttgtt ccacacggcc
     9301 agcgccctgg caaaggacga gcactggcgc agcgtgaccg gcgaggcgtg catttcccac
     9361 gccccgttga tttttgtgtg cagctctccg gggcggttga tggcaatttc cgtcagcccc
     9421 tcccggctca ggtagtcccc gaacaacaga tcgcgcaggt gtgacagcgc gacgttgccc
     9481 tctgacgggg tatcagtcag tttatcgtcc atcgcttacc tcatgcgcag tctgtagacg
     9541 tctgaaaaat caatgtccgc ccccgtgacc aggccaatca cgtcaccctg gttgaggtac
     9601 atcgtcggcg ggatgttgat gctgttttcc aggagcgttt ttgccatttc cgccgtggcc
     9661 gcgcgggtgt tctccgtgta gtccgtgttg cgatccttgc ccggcgacga gccggaggcc
     9721 gcagcggcaa agtcctgtac cgtgccgagc aggagggtat tacctatccg ctccagccag
     9781 tgattgtcta tccagcccgc gacgccgttc tcgccaagcg cccccacggc ctggctgtca
     9841 accatcggaa taaccaggcg gccgggttcc ggcgtgcgca gctcggtgat ggcgaggaac
     9901 agacgcccct gcccgttttt cagcgtgccg gtgcggtaca ggccgcgcgc ctcagtgcct
     9961 gccgggataa ggcgcacggc gttgctggcg ctgtaaatgt cctcgctgat aaggcagtta
    10021 aagcgcccgc ccacgtccga tacaaagcgc tgcatcatcg cgcaggggat atgccggtcg
    10081 gccggaatgt acaaatccgg atcgaggccg agccgcttca cgccggtaat gcgcgccagc
    10141 ccgttatcct gcgactgccc ggcgggtgtt gcagagcctg gcgcggacgc gctgcccgca
    10201 ggtgatacgt tactgctgga cgtgcttttc ggggcgctgc ttgcagtggt tggggcgctg
    10261 tctgccaggg cgctgacctt gtcaaacgtc agggggggcg gtgatgcctg cggcggcgcg
    10321 gcggtatcag tcggagtagt cttctcctgg ccggttgtgt ctgccagctg tcccagcggg
    10381 ttcagatccc gtccgaggtt attgcgctcg cgggcggggg aggtggcgtg cgattccggt
    10441 tcatggctcg cgctttttcc gctgccgtca cccttcagtt tcgccatcag gtaatccccg
    10501 ccggtggcga taatgaccag taacaccagg ctgatggcgg ccagcacgag cgagcggcgg
    10561 ctgcggcgct tcgcgtgctg caccacctgt ggctgtccgg gtggcaccgc gcctgcggcg
    10621 ggtttatcgc cgtcaatctc tgcccgcgcc cgctcgcggg cttccgcctc cagttcggcg
    10681 gcggttttaa tgtcttcctg ttcgttcatc atttgctctc cagtttcaca tccggtgaga
    10741 cggtgctgcc gttcgccacg gtgactttcc cgtaactgcc gttttcaatc cccacgacct
    10801 ggctgccgta gcgcagcaca aagcgtggag aaagagagcg cagtaccatc acccggtagt
    10861 taccctcggt gctgaaggtc ggggtgatca cctgctcgct gccgccgacg atgacggtcg
    10921 gcgacgggat cagcttctgc ggtgaaaagc cgagataggt aaaccggccg tcgtcatacg
    10981 caaaatccgg ggtgatcgac tccgaacctg ccgccaccct gcgggtgtag ttccagttgc
    11041 gcggcgcagt ggatttcttc agggcaaact gaatgcgttc tttctcctgc gcggcctgaa
    11101 gctcctgctg acgggcgagg cgggctgcgt cgttctgcct gcgggtatcg tcggggtagc
    11161 tgaagcgcac cacaaaggcc agatttcccg cctcgcgatc gttatcgatc acgttcagca
    11221 tcaggctgta gtcgcgcttt gtggtggtca caaacaggtt ggtctgccag tcctgctgcg
    11281 tgggggtgaa aatcttctgg acggttttgc cgtccgcatc cgttaccggc tgcttcaccg
    11341 gcgcggggct aatccccacg cggttacggt cgggtgtgat cgtccagccc tgcggaaaac
    11401 cagcggtggc ggtgatcacc tcctcgtcgg cgtcaaaaac cagcgtcgtg atgtaacccg
    11461 cccgcgtgtt aatcactgtc gtgttctggc tgttgtaggg gatgttctgc atgcggctgt
    11521 cataggcgct gccgcgcggt gtcgccgccc cccatgctga cgctgcggtc agcaggaggg
    11581 cacacatcag taccttattc atcgcttttc tccttaaacc gctggtaact ggtgacgatg
    11641 aagccgaacg ggttcacctc gcgctcggag gccgtcattt tcttctgcgg gaaatagcgg
    11701 taggtcatgc gcaccgtcca gtaatcatac gtttcggtgt tgtccttgac ctttcgaatg
    11761 gtgcgcttga tgcgcagcat ctccaccatg ctggagccgg tgccctctga cggtacgttg
    11821 gagaggactt ccaccgtgac tacataggcc gcctgctgaa acacagcgtc cggcgcgtcc
    11881 gggctgttaa accagtcgag gtattccttg ttgacctcgt cgctgttgaa catctgcgtc
    11941 tctctgtagt cctgctgaag ggcgaaatag ttgtacccct cgcggcgctt cacgtaggac
    12001 gcagtctgcg agagattgag cacctcggag gtgtccagct tgtcctcgcc gacggtggtg
    12061 acgcgctcga tgcgcccggt ctgacggtcg agcgtgtaca gctccacggt ggtggttttg
    12121 agcggtagca gcaggataag ggcggcaagg gcgaagacga gcagcagacc ggcgagcgcc
    12181 gccacgatcc agcccgcctt tttcatgcgc atatcccgct caagaatggc gttctcaaac
    12241 gagcgcgagt cgctcagggc tttggcggta agttcagaca tggggggtta actcctgaat
    12301 aatggccggg gaattgaccg gctccgggtt gcccgacacg ggcggaagtt gggtgtttcg
    12361 ctgtgcgcag cctgcaagca ggcacagcat cagcagcgtg atgccgtatt tcatggtgtt
    12421 tttcctgtgg taaagacgtg acgaagccgc aggacgccgt tgcggcgtcc cgcagttcag
    12481 tcagactggg ttatctctgg tagcgttcct gcatccgctg aacggcggcg cggctgcggc
    12541 tgcgcgcatc gccggtggcg cgggaggccg tggaggcaga cgaggccgtt gcgctgccgg
    12601 tgctgttaag gttctgtgag gctttatccc ccaccgcacc ggctgcggag gaggcggatt
    12661 gacgggctga acctactccc gacgcggcaa gtgcctgagc ggcaccctgt gcggatgcac
    12721 cggcaagcgc ctcggccagc ttataggtca ggaccatcac ggcggcggca cccgccgtgc
    12781 cgaggaagac ctgaacggcc agagtcaggt agttggcatc ggatgctttt gtggcgcccg
    12841 ccaggatgta gtccaggtaa tccattacca ccgtcagggc gatgccgctg aacagggatg
    12901 taaggatgca gcccagaata attctgagcc agttgctgaa catatcccgg aaccacgacc
    12961 acatcaggca gtagataaag atcggggcgg tcgccagcat cagcagcatc accagttcgg
    13021 ctatcaggtt aatgatggcc gtgatgccta ccagtaacat gacgcctgcc cagaccagaa
    13081 actgcgccag agtgcctttt agagcgacat aggttgaatc atcataagag taaagcttct
    13141 ccccaagtgc ttgagccttt tcccagacgg tatccagccg cgcccagatc gacgcgtcgc
    13201 cgctgaatcc gtcccgcagg ccggtgatgg catccgaaac cagatcgaga tagcctccgg
    13261 cgttggtgac gaaaatcatg atgatgagca tccggctcac gtcccacacg atctcctcga
    13321 aggggcggac tagcttgcct gccatcgtct ggtaggcgcg ccacgtgatg tacagcgaga
    13381 gcaccgcgat ggagaacagg tgtgccatcc acccccccgt atcggcggcc acgctggtga
    13441 gcacgctgtc aaacccctcc atgatgtggc tgtttaatcc gacgaatatt ccactcatgg
    13501 tgcgttctcc tgtcgctaat tcaggtcagc aataggctct tgcacgcgag ctttatcaag
    13561 gtctttcagg atttgcttat atccttcggc aacatcaggt ttagcttttt cacggtgaag
    13621 ggcggagcgt gcattctggc aatcggtggg cacaaaatta tgattaaaaa tgcactccct
    13681 gtatttcgcc agcatgtcgt catggtgtgc catataccag tctacggagg ttttatcctc
    13741 gcagccagta agcgcggcca ctgaggccag aacaataaag gtcagtgtct tcagtttcat
    13801 ggggtcacct gttagttaag gtctgcgatt ggagctgtgc gcatttgctc ggcctgcgcc
    13861 tttcggcgtt gttcggcaag cagctggttg cgcatctcac tttgtttgac cgacatttcc
    13921 cattgagtgg tcagggcgtt cagctggata ctccgcgcgg acactacgtt cgccagatcc
    13981 tgcgattctt tactgtcctt cgcattctcg atgcgactgg cgagattact aatatcgctc
    14041 agcgtgtcgg aaattttttc ctggatgtca gaagtgtcct cgacggacac cgcctgattg
    14101 aggagcatct gtttgcagct atcccggtac gcctcgctgg cgttctccgg gcagttgtcg
    14161 aacagtttgt atttgtcata cagcctgttt agttccccag cataagaccc gcctgagccg
    14221 gttaacagat cgtttaagga aatccccctg tttttcagat ttttaatgtc agccgtcagg
    14281 ttttttgcct gattcaggaa tgcctggacg tcccgaatac cggtggccgt tgccagctgt
    14341 tgtttataag cgttcatctg cgactgataa tgttgaaccg tctgctgcca ctgctggagc
    14401 ttctccgccc actgctggat gttgctggcg ttggctactt catcaaaaac gggaataccg
    14461 gcctgagccg ggacgtgaaa gagacacaag gcgacggtca gcgccgtcag ggtggttttc
    14521 agtttcatgg tgttatcctt ttgtgattaa acggcacgtc tcagcatttc gtctttccag
    14581 tcttccggct tcataccctc ctgccagatc tcgtcaaaaa ttttcaggtt gtccgcactg
    14641 gcgctgagca gcttcgtgta gcgacctagc ccggagaggt cgagggtgat ttgtgcgata
    14701 tacgggcgca cgtcaccacg ccgcagcgga gatttcatga tcaccatctg gcgggcgtag
    14761 gggtcgaggg tggtcacgat gtcgtaaacc gctttcggca cccgcagcat gtccacgtag
    14821 tcgtactcct tcgcctgctg gttcgccatg aagatgcggg tactacactg ctcgataatg
    14881 gccgccgaga tctcgtgctt gcacatctcc tccggcgact gcgtggccgg gaagaaaatg
    14941 ccgttgagct ttcgaatgac cttcagcatg tcgagggcga attttgaaaa ctccgggtcc
    15001 tgaagccatt tccagaattc atccatgaaa atgaccaggc ggcggccatc gaggaggctg
    15061 gtcacgcggt agagcaggta gaaggtgagc gggctgcgca cgtctttgtc gttcaggaac
    15121 tccgtgccgt cgatgccgaa attatcaata ttgtcgatat caaaggtgtc cacgtcatta
    15181 tcaaacaccc agccaaactc cccgccctgc gcccactgct ggagacggat gcgcagcccg
    15241 ttcatccgtg cgtccttcgt cggggcttca tgcagcactt ccagcatgcg ggtgatgccg
    15301 ttgcgacgaa gctcaggcgg gtagtccagc atgatggtgt ccactgcctc gctgaggcgt
    15361 tcttcatcgc gcgggtcgag cggtttgccg tcccttgtgc acatcattcg catcagcttc
    15421 ttgaggaagt tgcggttacg tttcgttgga gcgagcgcaa acgggttaag gccggtcttc
    15481 tcgcctgaac ggaaacggaa gtacgagccg ccctggaggc gtatcgacat ttccgccgaa
    15541 cggtctttat caaagaccac cgaggtgaag cgctttttcg tcgcccccgg cgcaaacgac
    15601 tcaggacgcc ggtatttctg catcagatgc tggaacatca tcagcagggt cgatttcccc
    15661 gtcccggtac tgccgagcag catggtgtta cccggcggct tctcgctgaa ctcgtcaaca
    15721 tcggcctggc tgttgtgcag attcacgtac tgacatcccc cggacggggt cggaacaacg
    15781 gcaatcgcct ccccccaggc attcccgtcc cgcttgtgcg ggtgaaagtt gtgaaacgac
    15841 accatttcgg cgtagttgag gctgctcacc ggcaccagac gcgggcgcag gtgatacaca
    15901 cccggcaact gcgcgagata cgccgccgac agcgactcgc gggacagggt catgatgaaa
    15961 ccgagatcct tcagggtatc cgccagggtg ttggtgtccc ggataacctg ctcgctggtt
    16021 ggggcgctga caataagcgt ctggtgatat ttcccgaatg aaataatgcc ggactgaagc
    16081 atgtcgcggg cgaccttcag gtcttcctgc tgggagatcg catcatcctc ggcagacttc
    16141 aggcgtttct cgatggtgcg gatgcagccc cgcgcttcat ccttacccat gcaggtatag
    16201 gactgcgtga acacgtaccg gcagcgggca taaagaagcg agtcatacag cccggtgatg
    16261 gtttcagtgc tgtaatcctt gatttccagc ccgcgaaagt agctctggcc gtcggtgtgg
    16321 ctgacctggc caatgtcggt ggaagggaaa atatccgtgc cgcccagcac gtcataaaac
    16381 ggcgtgcggg tgacgcggac tttctgccac ctgccggtga tcagaaagtt gtaaaacgcc
    16441 agctgggagg agaacacgtg cccgttctcc tcataagtgc caagcggccg cgccgcgtag
    16501 cgtgacagcg ccgtgccaat cgcttgccgg tgctcctgca tcacctgcag ggcattgtcg
    16561 agcagggttt tacgttcgcc cagggacttc tgtttcatgg tcgcccgctc aatgccggtg
    16621 tgcggattga agcagacggt gaagaagagg cgacgctggt agaaaggttt gccctcgcgg
    16681 gaggcgtaaa acagacgcgc gatttcatct gaaaacggaa tcccggattc acattcaagc
    16741 gtgtcggtaa attcgtcgct caccagatgg gtatagaagg taacgggtag cccctcaaag
    16801 gagcggataa cgttgttgag ctgcatgtcc agggtggcga ggtaatgttc atcctcgcat
    16861 tcaaaaatga taccgccgat ctcccaggtg ctgacaaagt cacctttttt gttcttcacc
    16921 acctgctcgt gcaggtggga agaccagggg agatagcggg acagcgggat actctcgttg
    16981 agccgcatat gttttataaa ctccgtaacg tctatggcgt cgtactggtt tgcgacaagc
    17041 gcctttgtcc cgaaatgccg ggtcgccgcg cggttgccac gcgttttaaa cgccagcaac
    17101 ttcaggtcaa agaaatgaat gtcctctttt gccagccgtc tcagctcgat aaaggcaggt
    17161 atgagaagca ggagaagcca gtaaaaacgt gaccagacgg ccgccagggt aaggatgcac
    17221 agggtgaaca gcagggggac aagcgggacc ccccacagcg ccgccggtcg ggtcagcgcc
    17281 ttgttgagga tggtcatgct gcctccttag gcggcgaagt aggcaccgaa cccggacgcc
    17341 ccggcgagca ggacacccgc ccagaacacg cgctggagat cgtgccaggc cttgccgtca
    17401 acaagcatct tgtaggcgat aaaggccacc gcacagctga tagtgacgac tgacatacca
    17461 gttaggccga ggaagaccca gttaatggcg tcactgcctt tctgaaatgc ctggtcagcg
    17521 ctggccgcca ttgctggaac agcagacagg gcggaaaatg cggcaatcag gcgggttgca
    17581 gcggttttga tagtacgtaa agtcatgatc tcttccttaa tcagaagaca cagcgaggcc
    17641 gccgcgcacg acatgtggcg gataagcagc gatgctggtc ggggtggtgt cgggtgccgg
    17701 aattacgccg cgtatgacgc tatccgggta aacagtgttg tcggacggga cggcaggcgc
    17761 ttccccggat gagggagatg ctgtctgctg ttctgcccgc gttgagggca caacgtagcc
    17821 aatacgctgt acgtagcttg tgttgccgaa cgcgctttcc gggcgctggc cggtttcaaa
    17881 gttgcctgag taatagcagc tcagggcgcg ctgtaatgtt cctcctcgtt gatagcagtc
    17941 ggtgatgatt ttcgcggcaa cagtcatgtt gtcacagggg ttaaacatgg attcggcgct
    18001 tacgccgaac tgcgggaagt tggtgctggt tatctgcatc agccctactg aataacggtg
    18061 ctttttctgc tttatggcct ccacaatttt tagcgcctcg tctttcgacg aaggcagatg
    18121 agaaatcacg cggctcctgc cgccctttac cgggacaatc tcagcgatgg catatggatt
    18181 taagccggat tcggtgcggg tgatgtcgtg gatggtatcg gggtgaacgg cgggagcaca
    18241 ctgcattgcg agctgaaaca acgcggcagt ggttaacata gtcagtcctt tctgtagagc
    18301 agtaccttac cggtggcaca gtccgggttg ataaataact gaatgtcgcc ctggctgtta
    18361 gcttgggcaa caccgatttt tgtaagcgtc attgccagcc gatcaccctt caccgaatac
    18421 acgttgtgcg tgtactcggt catgggggtg aatacggctt caagcagtga ggccggagca
    18481 ggcgtgatgt caggcattac atttcctatt ttccagcagt gaggtgattg catcgatacg
    18541 tcgcagcctg tcggcaataa gtacggatac atcggatttt ttgagtccct gcgctttcac
    18601 agtcagggta gtgatttctg cccgcagggc tgcccgttca attagcaatt ctcggacgtt
    18661 atccggcagc tccctgagcg accaggtgcc attaatggca cgcgtgatac ggtcacggga
    18721 ggagcgtagc ggcggcttgc cgagagttga ataaggattc tgacgcagcg ccttacggcg
    18781 gacggtttgc atgctcatgg ctgtttctcc tgggtatgag taagccaccc gcgtgcggtg
    18841 cacagtggga gacagggaag gattaaacgg gaggcttaac gatacagagg agtgagagtg
    18901 ttacccatta caggcgcggc acgtcatctc tttacgcagt cacagaaaac acctccttat
    18961 cctgaccggg gaacgccgct gctaggttat taaagagcta atgatttgat taatacaata
    19021 gtgcttataa gttgggtatt caataaaatt ataacttata gtatcgattt aagaatgatt
    19081 ccaattttta ggactttttc agctgtgtaa aatgttggag atgtttgaaa aaattgaaaa
    19141 aaaatactgg caggataaaa tcaagaaaat ctccaaattc agagtaataa aaatgcaaga
    19201 tctcgatgat gcaaaagtga tagaggtact ggcgaaggta ttgaccaaaa aaggtatttc
    19261 caaggtaaag cacaatagtt acataagtaa ggtgctacag atcactacat cagcgggcta
    19321 taagaagttg aatggtgcga ccaagtggga ggttcagcaa ctcataaaag tagtccaatc
    19381 cgttggcatg gatatgattg agtttttccg tatttattat gaggataata aagaaattca
    19441 agatgcgatc tggaacgatg gccgcagtga acactcttgt aaggtatgcc tctatcctga
    19501 aggttcggaa gtaaacacag aatactcagc actgaaagta gctgaccaat ggaacatttt
    19561 tccgacaaat gatttaaaag atgaactgct ttatgaatca aaacgaagca tagaaagtat
    19621 tgtcataaat ccaaaggtaa ttagcagcac taagtatcga attgcactac ttgatgacga
    19681 tgctaatatc accgaaagct taaaagaaat cctttcgaac gattattatc aagtagatac
    19741 ttatgataac ttgaaaaaac ttactcaagc tgtcgcaaca aatccgtatg acgcatatgt
    19801 tttggactgg atcatcggtg atgaaacaag ctttaagttg gttaaagcta taaggtcgtc
    19861 aaaaaataaa aatgcaatga taatcgttct tacaggtcaa ctatctggta taaaagatga
    19921 tgaaattgta aagtcaattc atgattatga cattgtggga ccatacgaaa agccgattaa
    19981 atcaggcatc atcaaatcta acattgaaaa atatttcgcc agatagatta tgagaaattt
    20041 acttgaatat tccggtagct tgataagtaa cgatagtttg atcgtagcac cttacgattg
    20101 tcagaagcta agctatgaaa atattttacc attaaacaat agtcttataa aaaactggaa
    20161 tatacaaaaa ttctcaagtg attactctga aatagaacac ctaaatgtga tcaatggcat
    20221 gggagtgaca ttaggtgatt ctatcgtcgg gatttctgtg ctgtcagcaa tcaaaaaaaa
    20281 gaatcccaag attaaaatta agcttattcg accggagact gcaccgtcat atgttgagga
    20341 actgtatgaa ttagcatcct cggttataga tgagcttcat tacatgcctt ttcatattca
    20401 gaaattgcct tgtactgcat tgaatattga tgtgggaaat cagctatatt ctccagattt
    20461 ccatattatg gaaatgcatg attattttat ccaaggtctt ggcgtgaaac ttgatgatgt
    20521 taaccataat gagctatcta ataaatggtt aggcaatatt gatctcggag cgccagtttt
    20581 tgaaaactac acactttttg cacctattgc tagcacaaaa ataagaagta taccgtcgaa
    20641 gttctattat gacatagttg atatgctttc taggcgcgaa ggaaaaacgg tactaggttt
    20701 cgtggatgtg aatcataaaa attatattaa catatcaaag tattcacccc atacgaaaga
    20761 tttcatagcg ctaattaagt atgctagcaa cgtttatact tgtgactcct ctgcattgca
    20821 tatagccgct ggatttggtg tacctactga atgcgtgttt aatacaatac cgccagaatt
    20881 aagaacaaag tattacagta agtgtaagtc gatttatgtt gggaataaaa gattagaaaa
    20941 aattcagagt agtgaagatt tccaactggt taaaatggtg gaaaataatt acagggagta
    21001 tctttatggt taaaataata tcattcttat ccctaatgct tttgtcaatt agtgcatata
    21061 gcaatattgg ggatatagtt atagatggtt caatcgctaa tgctaacagt gataaaggtt
    21121 atgtgattac tgaaaagcag tttgattcgt tcccacggga taccatcgta acgacaacac
    21181 cttggacgcc aaccggtaaa aaagtaaaat tcaagggcgt cgacctaagt tatgttttaa
    21241 aactcgctgg cgctaatgga gcaaagctaa aattccatgc tctgaatgat tatgaaatca
    21301 ttgtagacat gaatgacgtt gaaaaatata acattttatt ggctacagaa atggatggaa
    21361 aaaggcttca aataagggat tttggacctt attttttggt atatccttta gatgaacatt
    21421 atattgagct taacacgcca cactatcttg cacggttcat ttggcagata gacaaaatta
    21481 cggtgctcaa atgaaaaaaa atttctttat cattttggtt gctctgcttt tgttgatagc
    21541 attcactgtg tctagtgttg ttaagtacac cagtctttta tcggagaaaa atttatacac
    21601 cgtcgctggc acccaagaaa actacggttt ctcagtggca aaattcatta tacagttgaa
    21661 tgagctttac acgctaatca atagcgataa tactattgac gatgttaggc ttaaattcga
    21721 tatcctttat tctcgtttga atgttattta tgtaaagagt gaggcgactg cacctctata
    21781 taaacagcaa ggctatgaag aaacaattga ttcgataaac aaaaagcttg aagacataga
    21841 cgggctgctt tcgcataatc accctgatta taaaaaaata agtacaatca tagctgatat
    21901 aaaaccgcta actaaaaccg ttacaaatct tgctgatatg gctgaaatag cacaaaggaa
    21961 tgacgctctt aaagatttca ggagcaaacg tcagcagtta tggactctgc tttttattac
    22021 aggtgggttg atttccttac ttctttttgt cctatttatt tacataagta aaattaaccg
    22081 attgttacta tcagaacggg ctgcttttgc cagtaaaaat gcatttttag gtatggtagg
    22141 ccatgaactc agaacatctt tacaggcaat agtgtctatc attgatgtcg taaccaataa
    22201 tctgagtgga gggattaaat ctggtcagat agaacgactt gaaactgctg tttcgaaaat
    22261 ggagcgccag ttaaatgatt tggctgaatt tgcaaaaatt gacaacggat ctgtagagat
    22321 aaaaaacacc tataatagct tgcaagcaat tgttactaac gctgtgcagg attgcattgc
    22381 tatttatgaa aaaaaggatg tcacagttaa aataaaaaac aataatgatg cagtgatttt
    22441 tacagatgct ctacgcctta atcaagtaat tgaaaactta accagtaacg ctattaagta
    22501 cactgagcgc ggggaagtta atgtagatta ctttatagaa aaaggtaagg tattaaatat
    22561 tgtcatttct gataccggaa agggaatccc taaagacaaa ctaaagttca tatttaaacc
    22621 atttacacga gttgtagatt cgaaatccac tgtacctgga tttgggatgg gacttgctat
    22681 tgttgcaggg ataatcagac tattaaaagg tactattcat atatctagtg aagtaaatgt
    22741 aggtacaact gttacagtga gaatacctat caagttggga gatagcagcc ttgcaacagc
    22801 tgaggtatct gcttcagctc ccggagatgt cttcggcgtt cttagcttgc ttgttattga
    22861 tgataatgaa atggcctgtt cgtctctttc cagtctgctt actaatgctg gatacattgt
    22921 cgaggctaca acctcgcctg aacgagccct ggaaaagctt ctgcgtaaac cttatgacgt
    22981 tgtcctgagt gatttacaaa tgccaggcat gacaggtgat gagctgtatg caactgttag
    23041 tagcagtcag aatcctaatc gatccacgcc tttcatattc atcagcgcat acagtgatgc
    23101 acactctatc ggacaggctc ctttgttaac taaacctgtc aggttaaaag atataaacct
    23161 taaaatacat gaggttatgt caaatcaagg acgagtcaaa agtgagtagg cattgtcgta
    23221 atatttgcga ttatagcttt ggtgttctcg atcgttgcga attttgaaaa tttgtggagt
    23281 caaatggcgc cgaaagcccg gcgtagccgg ttacctggct ataaactctg ccaccctacc
    23341 ccctgccctg attagcctta acccgcttac agcaatgaag aagtaaaagt aatccctttt
    23401 aaccccggtg agcgggcttt acggcgttta cgacgtaaag ggcgtgattt ccggggcctt
    23461 agcggcggca gcttgctgct gacgcttagg gggatgttct tcagttattt cagcgacacc
    23521 agggaactta acacggtagt tgcaaagcta tacccgctaa aaatgtctca gatgcctctg
    23581 tacgcggtcg gagtggtccc ggcaaggcgt cagccgcagc cggggcgtat ctccgcgtta
    23641 gcgggccgaa gggccgctta cgagcgtgta cccgacaact gaccgcagct ccacccacag
    23701 cgatgaagaa gagtagttac aacacccatc attaaaagcg acactactcc cggccttcgg
    23761 ccgggggcgg cggcgctttt cagtggtggg gaggggcacc cggccggcaa accggcgccg
    23821 gttttatgat gagctttctt ttgaatgctg taactaattt ggttctccgg tcggggccct
    23881 tcgcgaagcg atgggagctc tttctgatgt tgccgaaccg gcgcgaccgt caggtcgctg
    23941 caagagcggg cattctccgg agcctgtcca cagggtaggc gatgaagagg ttatgtgttt
    24001 acaggattta ttaaaggatc tttaaaagag atacagaact ggtgtttaaa aggaactacg
    24061 cgccctgaaa gaccgacggc aggctcagaa gatgctccag cgtggccata gtacgttcac
    24121 cgaagacgtg tgcaacaacc gtcctccgta tcctgtcata cgcgtaaaac aaccagcgct
    24181 ggcgtgattt agcgccgacg taaccccact gttcgtccat ttccgcgcaa acaatgacgt
    24241 cactgcccgg ttgtatgcgt gagtttaccg actgcggcct gagaggcggt gtaagtgaac
    24301 tgtagctgcc atgttttacg gcagtgagag cagagatagc gctgatgtcc ggcagtactt
    24361 ttaccgttac gcaccacgcc ttcagtagct gagcaggagg gacaactgat ggagatggaa
    24421 gccacgggag cacctcaaaa ccaccatcat acactaaatc agtaagttgg cagcatcacc
    24481 gtaatcgtac agctaagaac aagtgcttca agtctactta ttaaaatgta cctttgaaaa
    24541 agtagacttt ctgcggtacg ctctgacagt aagtttgccc ccgatttttt acgcagcgcg
    24601 ccggacggag cccgacatga tcctgattcc cgatgacgaa ccggagctga gtctgcccgc
    24661 agccagtgag gaattcctgc cggcgctgtc aggtgagaat gccccggtca gcccggcccg
    24721 ggcctacctg ctttcactca attcccaccg cagccggcag accatggcct cgttcctgaa
    24781 catcgtcgcc gttatgctcg gagctgcctc cctggagtcc tgcagctggg gcagcctgcg
    24841 gcgccatcac gtgatggccg tgaccgaact gctgcgcgac accggccggg ccaccgccac
    24901 cgtcaacacc tatctttcgg cactcaaggg cgtggcgaag gaagcctgga tgctccggct
    24961 catggatgtg gagagcttcc agcatatccg ggcggtccgt aacctgcgcg gcagtcggct
    25021 gcccagcggt cgggcgctgc cccaggggga gatccgcgcc ctgtttgccg tctgtgaagc
    25081 cgatcgcagc tgcctcgggg cgcgggatgc agcgatgctg gcggtcattc tcggctgcgg
    25141 cctgcgacga tccgaagtag tgagcctgga tttgcgtgac gttgtcactc aggaccgtgc
    25201 gcttagagtg ctgggtaagg gaaacaagga gcgactggca tatgtcccgg ccggtgcctg
    25261 gcagcggctg cagatctgga tcgatgagat ccggggcgag accccgggcc cgctgttcac
    25321 acgcatccgt cgtttcgggg atgtgactct aaaccggcta accgaccagg cggtgtacca
    25381 tatcctgcag gtgcgccagg gtcaggccgg catcacgaaa tgttctccac acgatctgag
    25441 gcgaaccttc gccaccgcga tgctggataa cggggaggat ttaattaccg tgaaggatgc
    25501 gatgggccac gcgagcgtca ccaccaccca gcagtatgac cgtcgcgggg agcaacgcct
    25561 gcaggacgcg cgggatagac tcaaccttat ttagggctaa gtaaacacaa acaagggggc
    25621 tgtaccccct ctaattttac attaacacga tactcgacag actttcccag tcgtagtcag
    25681 caaccatcgc ccgatggagg ctgggataaa tgctgacagc ccgacgtgaa gcaaaaggct
    25741 ctcgccgctg gcatggctta atgtcgcggt cccctcaatc actaacacaa tttcagcgct
    25801 ggatgtcatt accgtttgat tgttcaccgc agtgaaaata ctgaaatgga aatcctcaac
    25861 aggaatagga tagcgcgctt ctgcggcgtg ctgttccggt aacatagggg agcccgcaga
    25921 attcggaaaa aatcgtacgc taaggttttc cgggcatccg taagggccga aacttcccgt
    25981 cttccagtct gcggctctgc cgccagacgt aatcgccggt taggttgatg tgctcccagc
    26041 ccagcggcga caggaattgc agcagctcgc cgtccaccgg cttgccggcc tcgaccaacc
    26101 cctgggtggc gcgttccagg tacaccgtgt tccacagcac gatagccgcc gtcaccaggt
    26161 tgaggccgct ggcccggtag cgctgctgct cgaagctccg atccctgatt tccccaaggc
    26221 ggttgaagaa caccgccctg gccagcgagt tgcgcgcctc acctttgttc aggccggcat
    26281 gcacgcggcg gcgcagttca acactttgca gccagtccag gatgaacagc gtgcgctcga
    26341 tccggcccag ctcgcgcagg gccacggcca gtccgttctg gcgcgggtag ctgccgagct
    26401 tgcgcagcat cagcgaggcg gtgacggtgc cctgcttgat cgagctggcc aggcgcagga
    26461 tgtcgtccca gtgggcacgc acgtgcttga tgttcagggt gccgccgatc agcgggcgca
    26521 acgtcgggta ggcttgcacg ccctgcggca cgtacagctt ggtttcgccg aggtcgcgga
    26581 tgcgcggcgc gaagcggaag cctagcaggt gcatcagggc aaagacgtga tcggtgaagc
    26641 cggccgtgtc ggtgtagtgc tcctcgatcc gcaggtcgga ctcgtggtac agcaggccgt
    26701 cgagcacata ggtggaatcg cggacgccga cattcaccac gcgggtgctg aacggcgcgt
    26761 actggtcgga gatatgggta tagaacagcc gtcccggctc gctaccgtac ttcgggttga
    26821 cgtgcccggt gctctcgccc cggccacccg cgcggaagcg ctggccatcg gaggatgagg
    26881 tcgtgccgtc gccccagtgg gcggcaaagg cgtggcgata ctggtggttg accagctcgg
    26941 ccaaggccgc cgaataggtt tcgtcgcgga tgtgccaggc ttgcagccag gacagcttgg
    27001 cgtaggtcag gccggggctc gactcggcca tcttggtcag cccgaggttg atcgcatcac
    27061 cgaggattgc ggacagcagc aacgtcctgt ctttggcctc ggccccgtcc ttcaagtggg
    27121 tgaagtggcg gctgaagccc gtccagtcgt ccacgtccat cagcagttcg gtgatcttga
    27181 tgcgcggcag taactggctg gtttggtcga tcagcgcctg cgcccgatcc ggcaccgccg
    27241 catccagcgg ggtgattttc agccctgact cggtgaggat ggcatcgggc agctcgttgt
    27301 ccttggccag gcgggtgacg gtggccaact gctcgtccag cagctgcaaa cgctcttcca
    27361 ggtactggtc gctgttcggg ttgatcgcca ggggcagggc ctgctcgcgc ttgagtgcgg
    27421 cgaacttctc ggccggcagc aggtagtcgt cgaagtcgcg gaactgccgc gagcccttga
    27481 cccagatgtc g
//
LOCUS       DAJVUP010000039        27457 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.039, whole genome shotgun sequence.
ACCESSION   DAJVUP010000039 DAJVUP010000000
VERSION     DAJVUP010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27457
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.039"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            454..3639
                     /gene="rne"
                     /locus_tag="OQQ75_001539"
     CDS             454..3639
                     /gene="rne"
                     /locus_tag="OQQ75_001539"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HCS1975913.1"
                     /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG
                     KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV
                     QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL
                     PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF
                     RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE
                     SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL
                     RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL
                     SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY
                     LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE
                     AMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA
                     QPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD
                     TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRR
                     RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV
                     VAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS
                     RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV
                     EEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTH
                     PEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEVAETAEVVVAEPE
                     VVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPHHSDWQR
                     PTFAFEGKGAAGGHTATHHASAAPARPQPVE"
     gene            complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="OQQ75_001540"
     CDS             complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="OQQ75_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HCS1975914.1"
                     /translation="MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPI
                     AASQAVVLSQAQAQNSQYTLARTFAIQKVSLEESVLSQVTTAIQNAQEKIVYASNGTL
                     SDDDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESI
                     KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADS
                     EADKEIAAAALDKTNRGLKNSLNNVLAVRAELGTQLNELESLDSLGSDRALGQTQQMS
                     DLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK"
     gene            complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="OQQ75_001541"
     CDS             complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="OQQ75_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HCS1975915.1"
                     /translation="MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA
                     NSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS
                     TSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNI
                     AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS
                     VQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLN
                     TGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPA
                     VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKV
                     AFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEKDAGDSDNRNGQ
                     ALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSIS
                     GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR"
     gene            complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="OQQ75_001542"
                     /pseudo
     CDS             complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="OQQ75_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415599.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
     gene            complement(7451..8548)
                     /gene="flgI"
                     /locus_tag="OQQ75_001543"
     CDS             complement(7451..8548)
                     /gene="flgI"
                     /locus_tag="OQQ75_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415598.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HCS1975916.1"
                     /translation="MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVG
                     LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQT
                     IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL
                     NGGRITNGAVIERELPSQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDA
                     RTIQVRVPSGNSSQVRFLADIQNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA
                     QGNLSVTVNRQANVSQPDTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSARLNNVVRA
                     LNALGATPMDLMSILQSMQSAGCLRAKLEII"
     gene            complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="OQQ75_001544"
     CDS             complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="OQQ75_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HCS1975917.1"
                     /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT
                     PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT
                     NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN
                     LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVVDARIEYVGNGYINEAQN
                     MGWLQRFFLNLSPM"
     gene            complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="OQQ75_001545"
     CDS             complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="OQQ75_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HCS1975918.1"
                     /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL
                     LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF
                     FQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT
                     QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGY
                     VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMQQKLTQL"
     gene            complement(10231..10986)
                     /gene="flgF"
                     /locus_tag="OQQ75_001546"
     CDS             complement(10231..10986)
                     /gene="flgF"
                     /locus_tag="OQQ75_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgF"
                     /protein_id="HCS1975919.1"
                     /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV
                     PVEGLSLPTRTLVTASTPGADMTPGKIDYTSRPLDVALQQDGWLAVQTADGSEGYTRN
                     GSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
                     LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMS
                     DMIASARRFEMQMKVISSVDDNAGRANQLLSMS"
     gene            complement(11006..12214)
                     /gene="flgE"
                     /locus_tag="OQQ75_001547"
     CDS             complement(11006..12214)
                     /gene="flgE"
                     /locus_tag="OQQ75_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HCS1975920.1"
                     /translation="MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA
                     GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL
                     DENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNS
                     SDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDP
                     NSIAKTATTLEFNANGTLVDGAMANNIATGAINGAEPATFSLSFLNSMQQNTGANNIV
                     ATPQNGYKPGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWS
                     ATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQD
                     QILNTLVNLR"
     gene            complement(12239..12934)
                     /gene="flgD"
                     /locus_tag="OQQ75_001548"
     CDS             complement(12239..12934)
                     /gene="flgD"
                     /locus_tag="OQQ75_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HCS1975921.1"
                     /translation="MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLK
                     NQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQASNLIGHGVMI
                     PGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
                     SFTWDGTLTDGSTAPNGSYNVAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGT
                     YGTTTLDEVRQII"
     gene            complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="OQQ75_001549"
     CDS             complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="OQQ75_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HCS1975922.1"
                     /translation="MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRA
                     KQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEM
                     VNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ"
     gene            complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="OQQ75_001550"
     CDS             complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="OQQ75_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HCS1975923.1"
                     /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTLGYQARDID
                     FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYQMSLSALSGQIKGMM
                     NVLQSGN"
     gene            13839..14498
                     /gene="flgA"
                     /locus_tag="OQQ75_001551"
     CDS             13839..14498
                     /gene="flgA"
                     /locus_tag="OQQ75_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HCS1975924.1"
                     /translation="MLAIKRSVAIIAILFSPLSAASNLTSQLHTFFSAQLVGVSDEVR
                     VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM
                     PIVRGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLRDLSPDQPIQLTHFRQAW
                     RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARMRMVSGLVVSGVVDADGNILIN
                     L"
     gene            14574..14897
                     /gene="flgM"
                     /locus_tag="OQQ75_001552"
     CDS             14574..14897
                     /gene="flgM"
                     /locus_tag="OQQ75_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-28 factor FlgM"
                     /protein_id="HCS1975925.1"
                     /translation="MSIDRTSPLNPVSTVQPRETTDAPVTNTRAAKTTDSTSTSTSTS
                     TSTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDIGKIADALINEAQQ
                     DLQSN"
     gene            14902..15318
                     /gene="flgN"
                     /locus_tag="OQQ75_001553"
     CDS             14902..15318
                     /gene="flgN"
                     /locus_tag="OQQ75_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FlgN"
                     /protein_id="HCS1975926.1"
                     /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE
                     QKSSLLATLDYLEQLRKKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE
                     RNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI"
     gene            complement(15358..16893)
                     /gene="murJ"
                     /locus_tag="OQQ75_001554"
     CDS             complement(15358..16893)
                     /gene="murJ"
                     /locus_tag="OQQ75_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706990.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HCS1975927.1"
                     /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG
                     MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP
                     AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGILQLVYQLPHLKKIGMLVLPR
                     INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS
                     GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV
                     SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI
                     LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV
                     AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR
                     RTV"
     gene            complement(17060..17926)
                     /locus_tag="OQQ75_001555"
     CDS             complement(17060..17926)
                     /locus_tag="OQQ75_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1975928.1"
                     /translation="MKKLRIGVVGLGGIAQKAWLPVLAAASDWMLQGAWSPTRAKALP
                     ICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRD
                     AERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFT
                     LLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAG
                     SQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIEC
                     VQNQTVPQTAGE"
     gene            complement(17928..18575)
                     /locus_tag="OQQ75_001556"
     CDS             complement(17928..18575)
                     /locus_tag="OQQ75_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HCS1975929.1"
                     /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR
                     EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL
                     ITTLLLRGAQTPGELRSRAARMYEFSDMAELESTLEQLANREDGPFVVRLAREPGKRE
                     SRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD"
     gene            complement(18586..19170)
                     /gene="rimJ"
                     /locus_tag="OQQ75_001557"
     CDS             complement(18586..19170)
                     /gene="rimJ"
                     /locus_tag="OQQ75_001557"
                     /EC_number="2.3.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1975930.1"
                     /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP
                     WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF
                     HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG
                     FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR"
     gene            19406..20608
                     /gene="mdtH"
                     /locus_tag="OQQ75_001558"
     CDS             19406..20608
                     /gene="mdtH"
                     /locus_tag="OQQ75_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtH"
                     /protein_id="HCS1975931.1"
                     /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA
                     AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL
                     WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ
                     YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA
                     GYYMLAVQVMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLM
                     AGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMG
                     FSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAA
                     RRLLERDA"
     gene            20672..21319
                     /gene="grxB"
                     /locus_tag="OQQ75_001559"
     CDS             20672..21319
                     /gene="grxB"
                     /locus_tag="OQQ75_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 2"
                     /protein_id="HCS1975932.1"
                     /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG
                     QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLL
                     PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK
                     PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI"
     gene            21453..22013
                     /locus_tag="OQQ75_001560"
     CDS             21453..22013
                     /locus_tag="OQQ75_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1975933.1"
                     /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK
                     DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP
                     VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS
                     QGEAMAKKLAKGIEVKPGEIVIPFTD"
     gene            22119..23165
                     /gene="pyrC"
                     /locus_tag="OQQ75_001561"
     CDS             22119..23165
                     /gene="pyrC"
                     /locus_tag="OQQ75_001561"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCS1975934.1"
                     /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVMPYTSEIYGRAIVMP
                     NLAPPVTTVEAAVAYRQRILDAVPAGHNFTPLMTCYLTDSLDPNELERGFNEGVFTAA
                     KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREAHFIES
                     VMEPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRP
                     HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL
                     GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV
                     PFLAGETVRWSVKQ"
     gene            23239..23484
                     /gene="dinI"
                     /locus_tag="OQQ75_001562"
     CDS             23239..23484
                     /gene="dinI"
                     /locus_tag="OQQ75_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein I"
                     /protein_id="HCS1975935.1"
                     /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY
                     AAANNLSVIGVTKEDKQRISEILQETWESADDWFVSE"
     gene            23774..24028
                     /gene="bssS"
                     /locus_tag="OQQ75_001563"
     CDS             23774..24028
                     /gene="bssS"
                     /locus_tag="OQQ75_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309465.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssS"
                     /protein_id="HCS1975936.1"
                     /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGT
                     EVGQTLWLTTDVARQFISILEAGIAKIESGDFPVNEYRRH"
     gene            24143..25261
                     /gene="solA"
                     /locus_tag="OQQ75_001564"
     CDS             24143..25261
                     /gene="solA"
                     /locus_tag="OQQ75_001564"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HCS1975937.1"
                     /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH
                     GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEDDPIFVRSGVINLGPADSAFLAN
                     VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK
                     EAGCAQLFNCPVTAIRHDDDGVTIETVDGEYQAKKAIVCAGTWVKDLLPELPVQPVRK
                     VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV
                     PFAEVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG
                     LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ"
     gene            25309..25422
                     /locus_tag="OQQ75_001565"
     CDS             25309..25422
                     /locus_tag="OQQ75_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceO family protein"
                     /protein_id="HCS1975938.1"
                     /translation="MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF"
     gene            25683..26249
                     /locus_tag="OQQ75_001566"
     CDS             25683..26249
                     /locus_tag="OQQ75_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HCS1975939.1"
                     /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFTLGLWMVTLSYYDGW
                     YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAAKAGHLALYLLLF
                     AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG
                     FMALKHHFIDKDDTLKRMLGKSSSDYGV"
     gene            26253..26828
                     /locus_tag="OQQ75_001567"
     CDS             26253..26828
                     /locus_tag="OQQ75_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HCS1975940.1"
                     /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG
                     YSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY
                     PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGK
                     IKLKDFNIKTDLGPASQEVDLIISVEGVQQK"
     gene            complement(26870..>27457)
                     /locus_tag="OQQ75_001568"
     CDS             complement(26870..>27457)
                     /locus_tag="OQQ75_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HCS1975941.1"
                     /translation="RNHYEYEVGHFENAFEIPADTFREQLPKAVEMMQAHKDKKIVMY
                     CTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGE
                     RISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPP
                     EEQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE"
BASE COUNT         6589 a         7310 c         6914 g         6644 t
ORIGIN      
        1 gggatgcgtt catataaaaa ctgtgagtaa gcgggtgata aatggtaaaa gtcatcttgc
       61 tataacaagg cttgcagtgg aataatgaag ccgtttccgt gtccatcctt gttaaaacaa
      121 gaaattttac ggaataaccc attttgcccg accgatcatc cacgcagcaa tggcgtaaga
      181 cgtattgatc tttcaggcag ttagcgggct gcgggttgca gtccttaccg gtagatggaa
      241 atatttctgg agagtaatac ccagtctgtt tctttgataa ttgcgctgtt tttccgcatg
      301 aaaaacgggc aaccgacact ctgcgcctct ttgagctgac gataaccgtg aggttggcga
      361 cgcgactaga cacgaggcca tcggttcaca cccggaaagg cgttactttg cccgcagctt
      421 agtcgtcaat gtaagaataa tgagtaagtt acgatgaaaa gaatgttaat caacgcaact
      481 cagcaggaag agttgcgcgt tgcccttgta gatgggcagc gtctgtatga cctggatatc
      541 gaaagtccag ggcacgagca gaaaaaggca aacatctaca aaggtaaaat cacccgcatt
      601 gaaccgagtc tggaagctgc ttttgttgat tacggcgctg aacgtcacgg tttcctccca
      661 ctaaaagaaa ttgcccgcga atatttccct gctaactaca gtgctcatgg tcgtcccaac
      721 attaaagatg tgttgcgtga aggtcaggaa gtcattgttc agatcgataa agaagagcgc
      781 ggcaacaaag gcgcggcatt aaccaccttt atcagtctgg cgggtagcta tctggttctg
      841 atgccgaaca acccgcgcgc gggtggcatt tctcgccgta tcgaaggcga cgaccgtacc
      901 gaattaaaag aagcactggc aagccttgaa ctgccggaag gcatggggct tatcgtgcgc
      961 accgctggcg tcggcaaatc tgctgaggcg ctgcaatggg atttaagctt ccgtctgaaa
     1021 cactgggaag ccatcaaaaa agccgctgaa agccgcccgg ccccgttcct gattcatcag
     1081 gagagcaacg taatcgttcg cgctttccgc gattacttac gccaggacat cggcgaaatc
     1141 cttatcgata acccgaaagt gctcgaactg gcacgtcagc atatcgctgc attaggtcgc
     1201 ccggatttca gcagcaaaat caaactgtac accggcgaga tcccgctgtt cagccactac
     1261 cagatcgagt cgcagatcga gtccgccttc cagcgtgaag tccgtctgcc gtccggtggt
     1321 tcgattgtta tcgacagtac cgaagcgtta actgccatcg acatcaactc cgcacgcgcg
     1381 acccgcggcg gcgatatcga agaaaccgcg tttaacacca acctcgaagc tgccgatgag
     1441 attgctcgtc agctgcgcct gcgtgacctc ggcggcctga ttgttatcga cttcatcgac
     1501 atgacgcctg tacgccacca gcgtgcggta gaaaaccgtc tgcgtgaagc ggtgcgtcag
     1561 gaccgtgcgc gtattcaaat cagccatatt tctcgctttg gcctgctgga aatgtcccgt
     1621 cagcgcctga gcccatcact gggtgaatcc agtcatcacg tttgtccgcg ttgttctggt
     1681 actggcaccg tgcgtgacaa cgaatcgctg tcgctctcta ttctgcgtct gatcgaagaa
     1741 gaagcgctga aagagaacac ccaggaagtt cacgccattg ttcctgtacc aatcgcttct
     1801 tacctgctga atgaaaaacg ttctgcggta aatgccattg aaactcgtca ggacggtgtg
     1861 cgctgcgtga ttgtgccaaa cgatcagatg gaaaccccgc actaccacgt gctgcgcgtg
     1921 cgtaaagggg aagaaacccc aaccttaagc tacatgctgc cgaagctgca tgaagaagcg
     1981 atggcgctgc cgtctgaaga agagttcgct gaacgtaagc gtccggaaca acctgcgctg
     2041 gcaacctttg ccatgccgga tgtgccgcca gcgccaacgc cagctgaacc tgccgcgcct
     2101 gttgtagctc cagcaccgaa agctgcaccg gcaacaccag cagctcctgc acaacctggg
     2161 ctgttgagcc gcttcttcgg cgcactgaaa gcgctgttca gcggtagtga agaaaccaaa
     2221 ccgaccgagc aaccagcacc gaaagcagaa gcgaaaccgg aacgtcaaca ggatcgtcgc
     2281 aagcctcgtc agaacaaccg ccgtgaccgt aatgagcgcc gcgacacccg tagtgaacgt
     2341 actgaaggca gcgataatcg cgaagaaaac cgtcgtaatc gtcgccaggc acagcagcag
     2401 actgccgaga cgcgtgagag ccgtcagcaa gctgaggtaa cggaaaaagc acgtaccacc
     2461 gacgagcagc aagcgccgcg tcgtgaacgt agccgccgcc gtaacgatga taaacgtcag
     2521 gcgcaacaag aagcgaaggc gctgaatgtt gaagagcaat ctgttcagga aaccgaacag
     2581 gaagaacgtg tacgtccggt tcagccgcgt cgtaaacagc gtcagctcaa tcagaaagtg
     2641 cgttacgagc aaagcgtagc cgaagaagcg gtagtcgcac cggtggttga agaaactgcc
     2701 gctgccgaac caattgttca ggaagctcca gctccacgca cagaactggt aaaagtcccg
     2761 ctgccagtcg tagcgcaaac tgcaccagaa cagcaagaag agaacaatgc tgataaccgt
     2821 gacaacggtg gcatgccgcg tcgttctcgc cgctcgcctc gtcacctgcg cgtgagtggt
     2881 cagcgtcgtc gtcgctatcg tgacgagcgt tatccaaccc agtcgccaat gccgttgacc
     2941 gtagcgtgcg cgtctccgga actggcctct ggcaaagtct ggatccgcta tccaattgta
     3001 cgtccgcaag atgtacaagt tgaagagcag cgcgaacagg aagaagtaca agtgcagccg
     3061 atggtgactg aggtccctgt cgccgccgct gtcgaaccgg ttgttagcgc gccagttgtt
     3121 gaagaaatgg ctgaagtcgt agaagccccc gtaccggttg ccgaaccgca accggaagtg
     3181 gttgaaacga cgcatcctga agtgattgcc gccgcggtaa ctgaacagcc gcaggtgatt
     3241 accgagtctg atgttgccgt agcccaggaa gttgcagaac acgcagaacc ggtggttgaa
     3301 ccgcaggaag agacggcaga tattgaagaa gttgccgaaa ctgctgaggt tgtggttgca
     3361 gaacctgaag ttgttgctca acctgccgcg ccagtcgtcg ctgaagtcgc agcagaagtt
     3421 gaaacggtag ccgcggttga accagagatc accgttgagc ataaccacgc taccgcgcca
     3481 atgacgcgcg ctccggcacc ggaatatgtt ccggaggcac cgcatcacag tgactggcag
     3541 cgccctactt ttgccttcga aggtaaaggt gccgcaggtg gtcatacggc aacgcatcat
     3601 gcctctgccg ctcctgcgcg tccgcaacct gttgagtaat aattagctca aagtaatcaa
     3661 gccctggtaa ctgccagggc ttttttattt catgtttgaa tcaacatatt aaaattcatc
     3721 aaatggcatc cttgctaacc aacaatgcaa aataggcaaa aaaaatgccc gccccggcga
     3781 tccctgagcg ggcagacaaa acatacccag tttcatgata tgttttaaag cgagcttatt
     3841 tgttgagctg gaagagcgac aatccctgca tatcggtaaa tgctttatac gatgcctgca
     3901 atgccgtttg ctgcatgatg taagatgaaa tagttgcatt ccagtccaca tcaaccagat
     3961 cgctcatctg ctgcgtttgc cctaaagcgc gatcgctacc taaggaatcc agcgactcca
     4021 gttcgttcag ctgcgtgcct aattccgcgc gaacggcaag gacattattc agcgagtttt
     4081 tcagtccacg gttggtttta tccaatgccg cagcggcgat ttctttatcc gcttcgctat
     4141 ccgcgaccgg cgttttcagg gctgcgatgg cgctatccag catggcaaaa agattggttt
     4201 cagaagcgct accgtctggc tccgcaactg cgttgctggt aatactgtcg aaaattttgt
     4261 cacccgtgtg ccctatcacc atcgaacgcg aagcatcgac ctgttgctta atactttctg
     4321 ctccaccgac gtatttccct ttctcttcgc taaacggcgc agtctctgtt ttataaccgg
     4381 caaaaatgta gcgcccgtta ccgtcagtgg tgttcgccag attcagcaac tggtcacgaa
     4441 gcccctgaat atccgtagcc agcgaggccc ggtcatcgtc actcaaggtg ccattgctgg
     4501 cgtagacaat tttttcctga gcattctgga tagcagtggt gacctggcta agtacactct
     4561 cttccagtga cactttttga atggcgaaag tacgcgccag cgtgtactgg ctgttttgcg
     4621 cctgtgcctg ggagagaact acggcttgtg atgctgcaat gggatcgtca gaagggttaa
     4681 cgactcgctt acctgtcgac atctgctcgc cgtacttcat ccattccgcc tgagaattgg
     4741 tgatgccacg catgttttgc tggtacatca tctgggtact gaaacgcatc ttatctcccc
     4801 ttagcgaatg ttaatcagcg catcaaaaat cgcgtttgcc gtctgcagaa cctgcgcatt
     4861 cgccaggtaa tactgctgaa aacgttgcag atttccgtac tcttcgtcga gattgacgcc
     4921 agagatagac tgctgctgat tggaaagctg cgtcaccaca ttaccttgcg tggcgctact
     4981 ggttttcaac gtcgcggttt tattaccgat atcactcact aacgaggcat aagcgtcgtt
     5041 aaaggatttc gcaccgccca ccgttttact gttgctttgc agatccagca gggcctgacc
     5101 gttgcggtta tcgctatcac ccgcatcttt ttcgctcgcc atcgctattt tcgcttcgtc
     5161 ggtgattaat acatccatgt tgacgatggc gtcacttact ggtttcagcg tgaagctgtc
     5221 gttaacggca ggcgttcctg taaacgtcaa ctccagacca tcaaatgcca ctttaccgtt
     5281 ggcatccggc gtcaccgtaa aagtggtatt gctggcaagg cgggtgacct gccactgatt
     5341 attatcgaac gagattttgt aatctgtcgc cagtaccgcg gaggcatcag ttaccgtggc
     5401 accgatcgca acgtcacctt tgtttttcgt gttttgcaaa accgcgggct taccgatagc
     5461 aaagaaatct tcaccagcat cgccgttggc atcaaatccg gctttgtgtt gggtgttgaa
     5521 agcctcagca aatgccagcg ccagttgtcc aagcgtatta cgcgtctggt ccagatcctg
     5581 agaacggaat gtcagaatgc cgcccagcga cccggtattc agtaatttct ccgggatctc
     5641 aatattgcct gccgtcccat caacgtaagc gacagtcgta cgagaagggt cggcgctgga
     5701 aggaactgcc gccagttgcc gcgccgtact tccctgaacc agtgagtaac cattggccat
     5761 cgtgatgtta taagtgccgc catcctgaac gctgacttct acaccaacaa tctggtttaa
     5821 ttcgctcacc agttgatcgc gttgatccag cagattgtta ggtgacgccc ctgcccccac
     5881 gcctgtcagg cgggagattt ggtcgttcag gctggcgatt tgtttagcgt aattgttgat
     5941 ctgatcaacg ctggcaccta tcgcgatatt gacctgtttg tcctggtcgc gaagatactg
     6001 atcggtggtt ttaaactgat tcaccaaccc ttctgatttc ccaatcagcg cctggcgcgc
     6061 tgccgggtct tccgcgttac tcaccagcgt ttgcaggctg gtgaagaaat cctgcatctg
     6121 tgttgccagc gaagaggtac tggtggagag catattgtcg attttcgaca tctgctcata
     6181 gcgggcagtc aggccgctac tttgcgtctg cgccgcacgt aactggttgg tgataaacgc
     6241 atcatactca cgctgcacac cagaaacgta gacaccattg ccaacccagc cgccagcgcc
     6301 caacgtgcta ttggcctgcg ccataatagt ggtttggcgg gtatatccgg caacgttata
     6361 gctggagata ttattacttg ccgtatttaa cgccgcctgg gccgcgttca gtccgctcat
     6421 ggcgttatta atcaagctgg acatggaggt tccttataag ccttcaatta cagagtatta
     6481 tcggcagcga cccgccggac ttgagttatt caaaacagat tatcaatgtt catactgtag
     6541 gttttgctca ccttgtcgct tatcgatttc atctgctgaa tcatgttggt gagtttgcgg
     6601 gcatagtgag gatcggtggc atagcccgcg tcctgtaggg cctgcgcccc ctgctccgca
     6661 ctcgtggcgg tggtcacggc ggcgtagcgc gggttacgcg ttaacagccc aacgtaatcc
     6721 gactatgctt ccagatacga gctgtagacc cgaaacttcg cttttacttt cttcgcttcg
     6781 ccgttttcat attcagtcgt ggtgatttca gtaactggcc ctttccagtt gccagaggct
     6841 ttgacaccaa acaggttata gctcggctcg ccgttttcgc ggcggatttg ccgttgcccc
     6901 caaccagatt ccagcgccgc ctgagcgagg atcaaatgat gtggcacacc gctttgctgg
     6961 cttgccagtt gggcgggcag cgagagttgc gcgaggaatg ctttactgtc acccggcagc
     7021 gaatcatcgt agttacgtgg cacggccttt tgcaccagct gcgaaagcgc ctgattttga
     7081 taacgcacca cagtttcgag cgggaatttc atcggtgctg ctggcgtgga ctcctctggc
     7141 aatggttgtt ctggcgtcat ctgtttaacc atcatctctg caagccccag acctttgccc
     7201 gccgtcatct gttgggcaat ctgctggtca tacatactgg tatacaggcg agtgtgctcg
     7261 ctgctgaaca ggccatcttt tggtaaagcg tcgcgcatgc ttttcaacat catctgcacg
     7321 aacatccctt ccacctgacg ggccaccgga cggatatttg ccgccggatc ttcgcccgct
     7381 ttcgccttta gttcgttgag tgattgcgca tcccaggccg cacttgccag tagtttgcta
     7441 tcgctgatca tcagatgatt tccagttttg cccgcagaca tcccgcactt tgcattgatt
     7501 gcagtatgga catcagatcc atcggcgtag cgcccagcgc attgagcgcg cgcaccacgt
     7561 tattgagcct ggcgctggaa cgtacgcttt gcagcgaacc gccgctctgg cgtaaatcga
     7621 tctgcgtttg tggagtaacc acagtctgtc caccaccaaa cggtgtatct ggctggctga
     7681 cattggcctg acgattaact gttactgaga gattcccctg cgctaccgcg cagctgtcga
     7741 gggtcacttc gcgattcatc accaccgaac cggtgcgcga gttaatcact actttagcgt
     7801 cctgcggggt gacattaacc tgcatattct ggatatcggc aaggaagcgg acctgggaac
     7861 tgttgccact cggtacgcgc acctgaatag tccgcgcatc taacgcggtg gcgctgccat
     7921 atccacgcac gcggttgatg gtgtcagcga tttgctgcgc catgctgaaa tcttcgtcgt
     7981 taagttgcaa attaagggta ttcccgacgc caaactggct gggcaattca cgttcaataa
     8041 ccgcaccatt ggtgatccgt ccaccgttca gttggttaac ctgaacactg ctaccgccag
     8101 cggaggctcc tgcgccgcca accagaatat tgccctgcgc cagcgcatac acctgactgt
     8161 caacgccctt aagcggtgtc atcaacaacg tacctccacg caagcttttg gcattaccca
     8221 tggaagaaac caccacatcg atggtttgcc cctgacgtcc aaacggagga agtgacgctg
     8281 tcaccattac cgcagcgacg ttttttagct gcatattggt gcccgtcgga acggtaattc
     8341 ccagctgtga gagcatgtta ttaagcgttt gtgtggtaaa cggcgtctgg gttgtctggt
     8401 caccggtgcc atccagcccc accaccagac catagccaat cagtgagttt tgccttaccc
     8461 cctgaacact ggtgagatcg cgaatacgct cagcctgagc cgccgtcgtg accagtagaa
     8521 gaattaatgc agagagaaat ttaatcacca cagcctcact tacattggcg acaggttaag
     8581 gaagaaacgc tgcaaccagc ccatattttg cgcttcgtta atgtagccat tgcctacgta
     8641 ttcaatgcgc gcatccacca cctgagtaga cggtacggta ttgctgccgc tgatagtgcg
     8701 tggattaacc acgccagaga agcgaataaa ttcggtaccc tgattaatgg caatctgttt
     8761 ttcacccacc acatgcaggt tgccgttgac cagtacctgg tcaaccgtca ccgtcaacgt
     8821 gccgctaaag gtattgctgg cattggcccc gccctttccg ttgaacgtgt taccaccgga
     8881 ggcttcgaca tcggcacgag cgttaccaaa cagcccctgc aaatagcgcg gcacagtatc
     8941 aaagccaaaa ttagttttac cgtcacggct ggcattcgca gaggagcttt tgctggcgct
     9001 gacgttctcc tgcaacacga tggtcagcgt atcgccaata ttgcgtggtc gacgatcttc
     9061 aaacagcggt tgatagccat agttaatcgg ctgagcagac tggaaaatag aaccgttggc
     9121 gacgggcgtc ggaccgggaa ccggttgtgc actggtcgcc ccctgcacca gcggcgtgga
     9181 gggtatccag gcgcagccgg ttagtgaaag caccaacaag ctggaaatgg cataagtatg
     9241 cgcagcgttt ttttgcatgg ctatcatctt caaaaatcag taaaccggtg aacctgccac
     9301 cggttaagcc ttagagttgc gtcagttttt gctgcatctg atcggtggtg gacaccgctt
     9361 tactgttgat ttcgtaagcg cgttgcacct gaatcatatt gaccagttct tccgccacgt
     9421 tgacgttaga cgtttcaaca tacccttgat acagcaatcc cgcgccgttc aggcccggcg
     9481 tgctttcgtt cggtgcacca gaggattgcg tttcggtgta gaggttttcg ccaatgctct
     9541 ccagcccggt gtcattcata aaggtggtga gattgagctg cccaacctga accggagctg
     9601 cctggccttg ttgggttacg ctgaccacgc catcacgacc gatggtgata cttaacgcat
     9661 tcgccggaat ggtgatcgct ggctgcacct gaaaaccacc agccgtcacc agctgcccgt
     9721 tctgatccac ctggaaagag ccgtcacggg tataggctga tgaaccatct ggcaacatca
     9781 cctggaaaaa gccctgccct ttaatcgcga catctttgct gttgttggtc tgcgacagat
     9841 ttccctggct gtgtaagcgt tcagtggcga ccgggcgtac ccccgtgccg atttgtaatc
     9901 cggagggtaa ggtggtttgt tcggaagact gtgcccccgg ctggcgaatg gtttgataaa
     9961 gcagatcttc aaacaccgcg cgctgacgct taaaaccgtt agtactgacg tttgccaggt
    10021 tgttggcaat gacgtccata ttggtttgct gggcgtcaag gcccgttttg gcgatccata
    10081 atgaactgat cataaaatgt cctgtagtgg attagtgaca agcagagcag aagcacgcga
    10141 cagtgtgaat tccccctcac tctaaccctc tccccaaagg ggcgagggaa tagtccgcgc
    10201 gcttttattg caatgtcatc aatcgttcaa ttaactcatc gacagcagtt ggttggcacg
    10261 gcctgcgtta tcatcgacgc tgctgatcac cttcatctgc atttcaaaac gccgcgcgct
    10321 ggcaatcatg tcgctcattg ccgcaacggc attgacgtta ctgccttcca gaacccccga
    10381 catcacacgc aaggttggat ctgcctgcag taccggccct cgcgtggcct gggtttctgc
    10441 gcttaaacga aaaatgccgt cgtcaccgcg ctgcacttcg ctgcccgtgg ctttcaccag
    10501 tttcagacgc cctactggcg caactgtatt tgccggatcg cccggattga gcgccgagat
    10561 tgtgccatcg gcagcaatag tgatttccgc tccttccggc acagcaattg gccccgcctc
    10621 gcctatcacc tgatgcccct gaattgtcag ttgcccggtg ggatcaacct gaatgctgcc
    10681 attacgcgta tacccttcgc tgccgtcagc ggtctgcacg gccagccagc catcctgctg
    10741 caacgcaacg tccagcgggc gcgaggtgta atctatcttg ccgggcgtca tgtctgcacc
    10801 cggtgttgac gccgttacca gcgtgcgcgt gggcagtgaa agcccttcca ccggcactgc
    10861 gcgcaaggcg tttaactgcg cgcgaaaacc gggcgtagag gcattggcca gattactggc
    10921 ggttaccgcc tgttgattca gcgtctggct ggctgctccc atcgcagtat aaattgcgtg
    10981 atccattgag ctatcccgtc agcgattagc gtaagttaac cagcgtgttg aggatctggt
    11041 cctgggtttt gatggtctgg gcgttagact gatagttacg ctgggcaacg atcatattga
    11101 ccagttcttt actgagatcg acgttggacg cttccagcgc accgttggtc agggtgccaa
    11161 agtttcccgt cccggctgtc cccaacagcg ccacgccaga agattgcgtc gcagaccaga
    11221 cgttgtcgcc ttcggatgcc agaccttcgt tgttggcaaa gttcgccagt acaatctgcc
    11281 ccagcagttg agtttgttcg ttggaatagt tgccgacaac cgtaccgtca tcattgattt
    11341 gataactcac cagatcgccc ggtttgtagc cgttctgggg ggttgccaca atattgttag
    11401 cgccggtatt ttgctgcatg gagttgagga agctcagact aaacgtggcg ggttctgcac
    11461 cgttaattgc gccggttgcg atattattcg ccatcgcacc atccactaat gtgccattag
    11521 cattaaattc cagtgttgtc gctgtcttcg caatgctgtt tggatcactg ctatcctggg
    11581 tgtagacctg ccagttatta tccccggtct tcacaaagta gacgctcatg tcatgagcat
    11641 taccctgact gtcgaaaaca gtcaccgaac cttttttgtt atagctatcc gcattgctgg
    11701 cgctgaatgg cgtaacagta ggaagcggat cactggaatt caggttgatc tgcatcgacg
    11761 ccgtggtggt agttttcgct gccatcaggg tattcgggat cgaaatattg gtcggattcg
    11821 ccccttgctg aatagtcggc ggcgtaccgg ttgccgggta acccgtcagc tgtaaacctt
    11881 gcatattcac caggttacgg ttttcatcca gcttaaattg tccgttacgg ctgtagaaca
    11941 ccgaaccgtt gctgtctacc agacggaaaa aaccgttctg gctgatagca acgtccagac
    12001 ctcgcccggt gttggtggtc gtgccatctg taaagtcctg agtgataccg gcaactttta
    12061 cccccagtcc cactttcgaa ccggcaaaca tatcggcaaa agaggccgtg cctgatttaa
    12121 agccgtaggt ggcggagttg gcaatattgt tgccaataac atcgaggtta gtggcggcag
    12181 cgtttaatcc gctaaccgct tgagaaaagg ccatgactga ctcctgaaat gtgaaggctt
    12241 aaattatctg ccgtacttcg tcgagggtgg tggtgccgta agtgccgaga tccagcgtat
    12301 taccgctgtt gccgcggatc acaccctgca ccagagcaaa ctgcagcggc tgggcaacca
    12361 gttgtgtacc accgttactg gcggtaatcg ctacattgta agaaccgttc ggcgcagtgc
    12421 tgccatcagt caacgtaccg tcccaggtga aactgtgaac tccggcggtc agttcaccaa
    12481 tatcaatggt gcgcacaacc gcgccatttt tatcggtgat ggtggccgta actttgtctg
    12541 ccgcctgttg cagctcaaca ccaaacggcg tggtcgtggt cacagcccct tcttcactgc
    12601 cggttcccgc aagaacagtt gtgccgggga tcatcacgcc gtgaccgatc aggttactgg
    12661 cctgtaacga ctggctgtta tcaatctgtc cggaaataga tccgagcatg gtattgagtt
    12721 tttcaatccc gctgaccgtg ctgatttgtg ccaattgcga cgtcagctcg ttgttttcca
    12781 ttggattggt cgggtcctgg tttttcagct gcgccaccag caaagtcaga aaactgcttt
    12841 gtaaatctgc ggcgttgctg cccgtgagcg aactactgct ggtggtactg acgccggtat
    12901 ttgtcggatc ggtggtggtt accgcaatgg acatagcttt ctcctttatt gaccgagcgt
    12961 aagggttttc agcatcatgc ttttcaccgt gttgagcact tcaacattgg cctgatagct
    13021 gcgtgacgcc gacatggtgt taaccatctc tccgacaaca tcaacgttcg gcatttttac
    13081 gtagcccttt gcatccgcca gcggattacc cggttcataa accagtttgt ccggggcctg
    13141 actttctata acatcggcaa cctttacgcc gcctgtcgca gcacctggtg cagcgttaac
    13201 ctggaatacc acctgttttg cccgatatgg ctgtccatcg ggaccggtca cgctatcagc
    13261 attcgccaga ttactggccg ccacgttcag gcgctgggac tgggcagtta acgccgaccc
    13321 ggcgatatca aaaatattca gcagtgccat ccgttaattt ccgctctgta aaacgttcat
    13381 catgcctttg atttgcccgc tcaacgcact aaggctcatc tggtattgca gttctgcggt
    13441 aggaggcgtc agcgcctgcg ccggaatgtg ttgcgttgag gtcatcgtca gagcaaccac
    13501 actggttgca tcccgtccac gttgcatgac ttttttaagt tcactggcaa aatcgatatc
    13561 gcgcgcctga taaccaaggg tatcggcatt ggcgatgttt gctgccagca cttcctgacg
    13621 ctgggcgcgc agattgagcg cctcttgttg aaaacgtaag gcggcgtcga gcttatcgag
    13681 catatctcct ccgcaggtat caaaattctg ccatcagctt aaatgccttt acgcgcgcgt
    13741 tatcggcgga ataaacgcaa aatgggtcgc tatttatgcc gttgatgacc attggggacg
    13801 ggtacaattc acgttgtaga aatagctggg gggcgaaaat gctggcaata aaacgtagcg
    13861 tggcgatcat cgcgatactg ttcagtccgt taagtgcggc gagcaatctc acatcgcaat
    13921 tgcacacctt ttttagcgcc cagctcgtgg gggtaagtga tgaggttcgt gtttctattc
    13981 gtacagcacc caatctacta ccgccgtgcg agcagccatt gctttcgatg agcaataatt
    14041 cccgcctgtg gggcaatgtg aatgtgttgg cacgctgcgg taacgacaaa cgatatttac
    14101 aggttaatgt gcaggccaca ggaaattatg tggttgccgc gatgcccatt gtgcggggag
    14161 gaaagctgga agctggcaat gtcaaactaa aacgcggacg actggatacc ctgccaccgc
    14221 gtacggtgct ggatatcaat caacttgttg atgccattag cctacgcgat ctatcacccg
    14281 atcaaccaat ccaattaacc cattttcgcc aggcatggcg ggtaaaagcg ggacaacgcg
    14341 tcaacgtgat cgccagcggt gacgggttta gcgccaacgc agaaggtcag gcgctgaaca
    14401 atgcagccgt cgcacagaat gcgcggatgc gcatggtatc gggactggtg gtcagcggcg
    14461 ttgttgatgc agatgggaat attcttataa acctgtaagc tgttaaagat tacccgtccc
    14521 ttgccgataa ataagcaaca catgataaaa gcgccctcaa tgaggaataa accatgagta
    14581 ttgatcgcac ttcgcctctg aatcccgtaa gcaccgttca accgcgcgaa accactgacg
    14641 cgccggtaac gaacacccgg gcggcaaaaa caaccgactc caccagcacc agcaccagca
    14701 ccagcaccag caccagcacc agtgtgacgt taagcgacgc gcaagcaaaa ctgatgcaac
    14761 ccggcagcag tgatatcaat cttgaacgtg tcgaagcgtt aaaactggcg attcgtaacg
    14821 gtgaactaaa aatggacatc ggcaaaattg ccgatgcgct gatcaacgaa gctcagcaag
    14881 acttgcagag taactgatcg tatgacacgt cttgcagaga tccttgacca gatgtccgct
    14941 gtgcttaacg atctcaaaac ggtaatggat caagagcagc aacatctctc tatggggcag
    15001 atcaacggca gccagttgca atggattaca gaacaaaaaa gctcactgct ggcgacgctg
    15061 gattacctcg aacagttacg caagaaagaa cccaatacag caaatagcgt tgatattagt
    15121 caacgctggc aggaaattac tgtgaaaacg cagcaactac gccaaatgaa tcaacataac
    15181 ggttggttac tggaaggaca gattgagcgc aatcaacagg cgctggaaat gttgaaaccg
    15241 catcaggaac cgacgctata tggggcgaac ggtcagacct caacaaccca tcgcggcggt
    15301 aaaaagattt cgatctgaag attatctccg gcctgcactg caggccggaa tgcattgtta
    15361 caccgtccgg cgggcaaatt ctttaacttt gaagcccagt accgccagtg cagcgaagta
    15421 cgcggcaatc cccgccagca cgaccgccat taaacgcagt aagcgccagg gcatggtacc
    15481 caatgaccac tccggcatga tatgtaacat acctaaaagc acgccagaca tcaccagtac
    15541 cgccaccacc agacgcaaca gaaacgccat ccagccgggt tgcggagtaa agattttctg
    15601 cttacgcaac tgccagtaaa gcagcgaagc attcagacac gccgccagac caatagaaag
    15661 tgacagcccg gcatgtttca acggaccaat aaacgccagg ttcatcaatt gcgttaaaat
    15721 cagcgtaacg atggcaattt tcactggcgt tttaatgtcc tggcgggaat aaaagccagg
    15781 agccaacact ttcactacaa tcaggccaat caaacccacc gagtaggcaa ttaacgcccg
    15841 ctgggtcatc agcgcatcaa acgcggtaaa tttaccgtac tggaacagcg aaacggttaa
    15901 cggacctgaa agaatgccca acgcaaccgc actcggcagc gccaacagga aacaaagacg
    15961 caacccccag tccatcaaac ggttgtattc atcatgattg ccactggcaa aacttttcga
    16021 cagcgacggc agcaaaatgg tgccaagcgc cacgcccagc acaccggacg gaaactccat
    16081 taagcggtcg gcgtaataca tccaagacac cgaaccggaa gcaagaaacg aggcaaaaat
    16141 ggtgttgatg attaaggaga tctggctcac agagacgcca aggatcgccg gtcccatctg
    16201 tttcaccacg cgcattgctc cggcatcgtg gaagttaatg cgcggcagga ccagcatgcc
    16261 gatcttcttc aggtgcggta gctgatacac cagctgcagg atgccgccga ccgtaacagc
    16321 ccacgccagc gccagcaccg gtgggttaaa gtacggtgcg gcaaacagcg cgaaaccaat
    16381 catgctgatg ttaagcagtg ttggcgcaaa cgccggaatc gagaagcggt tccacgtatt
    16441 cagaatcgct cccaccagcg acgccaggga gatcagcaag atatagggaa aggtaatctt
    16501 tagtagctgg ctggtcaggg caaatttgtc agctgtatca gcgaagcctg gcgcggtcac
    16561 catgatcacc cacggtgcgg cgagcatgcc agcgaccgtc acaaccgcca gcgcaagtgt
    16621 cagcaggcca gaaacataag agacaaagac ccgcgtggcg tcttcaccct gcttactttt
    16681 atattccgcc agaatcggta caaatgcctg ggaaaatgcc ccttcggcaa agatacggcg
    16741 taacaagtta ggaagtttaa aagcgacgaa aaaggcgtcg gttgccatcc ctgcgccaaa
    16801 gattctggcg acaattgcgt ctcgtgcgaa gccaagcaca cgcgaaaaca tggtcatcga
    16861 gctgacggcg gccagcgatt ttaataaatt catcggtgtt ctaatccaga ccaacgggca
    16921 aaacgcctgc aagacaggcg ctgaaagagg cgaatagtct acctggatta tggtgaattg
    16981 ctaccgccag atgttacagg gtttattcac tcatcgcatc gcgccagatc ttgtcaacga
    17041 tacgttgcgc cagcacggcc tattcgccgg cggtttgcgg aactgtctga ttttgcacac
    17101 attcaatgaa gtgccgcgca cagccgacaa atccacgttg ttcaagagtg ctctgccaac
    17161 caggaatcgg tttatgcact acgccctgcc cgcgctcctc acgccattcg cgcatatccg
    17221 taatgtcgat gagcgcaccg tcagtcacgg cctgcacggt ttcacgctga cttccggcac
    17281 ggcgatgcat acaggtggtg atctgcaaag gaccggccga aaaatggtgc tcggcaaaca
    17341 gcatttcgcc agcgtcgtta gtcagtagcg taccgccatc cagagaggct ttgccgcccg
    17401 acaaccacag cgcggtatcc accacatgca gataatcatc cagcaacgtg aaataaagat
    17461 cgtgtggccc gacactattg ctacgatgtt tatccattct tagcgaagct gcggtagcga
    17521 gttgcgtttt taactcaccg tagagtggtg cgaaacgacg gttaaaaccg accatcaacg
    17581 tcagtttttt ccgcgccgcc agttccacca gccgttcagc atcgcgcaga ttttctgcca
    17641 gcggtttatc gacacagaca tgtacacccg cattgagtaa cgtactgacc acgtcaaagt
    17701 ggctggcggt gctggaatgc acaaaaaccg catcgcaact ggcggcaagg ctggataacg
    17761 aatcggcata aggaatgcgc cagctttcac aaattggcag ggctttcgcg cgcgtaggcg
    17821 accaggctcc ttgtaacatc cagtcagacg ctgccgccag caccggtaac cacgcttttt
    17881 gcgcaatgcc gcctaatccc acaacgccga tacgtaattt tttcacttta atctcccaga
    17941 tgggccagca acgaatcaag acgctgtttc agttctgcca cttcgatttc cagggcttcg
    18001 acgcgggcct gtaaatcacc atcaaccgcg ttcgacatat ccgttaccgc cggctgatcc
    18061 tctacctcac cactgaaaag atgcatgtag cggctttcgc gtttacccgg ttcgcgggcc
    18121 agacgcacca caaaaggacc atcttcgcga tttgccagtt gttccagcgt cgactccaat
    18181 tccgccatat cgctgaattc atacattcgc gcggcgcggc tgcgcagttc acccggcgtc
    18241 tgggcaccac gcaataacaa cgtggtgatt aacgccactt ccgctgcgct cagtttcaga
    18301 tcgccaaatt ctgaattaca aaaacgttgt tcatatttgg tgacccgatt accaaagcca
    18361 ctcaccgtgc gcagataatg gcgtttgacc agattatcca gttgctcctg cacttcagat
    18421 tcactcagat tcatgaccgg ttcacggttc gttttctgat tacaggccgt gactacacca
    18481 ttgactgaga gcgggtattg ctccggcgtg gtcacctgct tttccagcaa gcaaccaatc
    18541 acgcgagctt caagggcagt aagttgatat ttcatgagat tctccttagc ggccgggcgt
    18601 ccagtctggg gtagttaatg ccgtcagtac gtgatcgcgc cattgtccat caatcaacag
    18661 atagtctttc gcatagcctt ctttttcaaa acccagtcgc gccagtaaat caccgctgcg
    18721 tttattgtgc ggcatataat tagccataat gcgatgaata tgttgggtgc gctgcatata
    18781 acgaatggct gcggtcaggg cttcaaacat gagtcctttg ccctgccatt tttgcccaat
    18841 cgaataaccg agatagcagg catgaaaaga gccacgaaca acattggaaa aattggcaac
    18901 gccaataatc tctttttcgt ccgggtcgaa taagccaaag tagaaagctg aaccttgttt
    18961 atgaaattcg ttaatcatcc ccagcctggc ctgccagcct gatggataac agtggctttc
    19021 gtcgcgcact ggctcccagg gcttgaggaa atggcgattc tctgcgtaat aatccgcaag
    19081 acgccaggca tcacgatcat gcaccagacg cacgaccagt cggtctgtgg ttaagcgcac
    19141 ttttggcacg ttactgcgat agccaaacat tctataccta ctccttcccg taacgtcttt
    19201 aatacgctgt aagtattact atacctgcgc aaccagaccc tgtgaaaagt ccaaaatgcc
    19261 attttctgca ttattcacat atttgataaa aactctctat caaagcgacg ttttgataaa
    19321 aaaatattgt ccccgaagtg atgggaaaag tcttagcggc aatgcagaat agaaagtgct
    19381 catcttttat ttcccgggag gggaaatgtc ccgcgtatcg caggcgagga acctgggtaa
    19441 atatttcctg ctcatcgata atatgctggt cgtgctgggg ttctttgttg tcttcccgct
    19501 gatctctatc cgcttcgttg atcaaatggg ctgggccgcc gtcatggtcg gtattgctct
    19561 cggtctacgc cagtttattc agcaaggtct gggtattttc ggcggcgcaa ttgccgaccg
    19621 ctttggtgcc aaaccgatga ttgttaccgg tatgctgatg cgcgccgccg gattcgccac
    19681 aatgggtatc gcccacgaac cgtggctatt gtggttttca tgcctgctct cgggactcgg
    19741 cggcacgttg tttgatccgc cgcgttcggc gctggtggtg aaactaatcc gtccacaaca
    19801 acgtggtcgt tttttctcgc tgttgatgat gcaggacagt gccggtgcgg tcattggcgc
    19861 attgttgggg agctggctgt tgcaatacga ctttcgcctg gtctgcgcca caggggccgt
    19921 tttgtttgtg ctgtgtgcgg cgttcaatgc gtggttgtta ccggcatgga aactctccac
    19981 cgtacgcacg cccgttcgcg aaggcatgac ccgcgtgatg cgtgacaagc gttttgtcac
    20041 ctatgtcctg acgctggcgg gttactacat gctggctgta caagtgatgc tgccaattat
    20101 ggtcaacgac gtggctggcg cgccctctgc cgttaaatgg atgtatgcca ttgaagcgtg
    20161 tctgtcgtta acgttgctct accctatcgc ccgctggagt gaaaagcatt ttcgtctgga
    20221 acaccggttg atggctgggc tgttgataat gtcattaagc atgatgccgg tgggcatggt
    20281 cagcggcctg caacaacttt tcaccctgat ttgtctgttt tatatcgggt cgatcattgc
    20341 cgagcctgcg cgtgaaacct taagtgcttc gctggcggac gcaagagctc gcggcagcta
    20401 tatggggttt agccgtctgg gtctggcgat tggcggcgct attggttata tcggtggtgg
    20461 ctggctgttt gacctgggca aatcggcgca ccagccagag cttccgtgga tgatgctggg
    20521 aattattggc atcttcactt tccttgcgct gggttggcag tttagtcaga aacgcgccgc
    20581 gcgtcgtttg ctggaacgcg acgcctgatt tgatactccc ccctgactcc tccatactga
    20641 aagtgaactg acagccaaat ggaggagtca cgtgaagcta tacatttacg atcactgccc
    20701 ttactgcctc aaagcccgca tgattttcgg cctgaaaaat atccccgtcg aattacatgt
    20761 tctgctcaac gacgacgcag aaacacccac ccggatggtc ggtcaaaaac aggttcccat
    20821 tctgcaaaaa gatgacagcc gctatatgcc agaaagcatg gatatcgttc actatgtcga
    20881 taaactcgac ggcaaaccgt tactgaccgg caaacgttcc cctgccattg aagagtggct
    20941 gcgcaaggtc aatggctacg ccaacaaact gctgttgccg cgttttgcca aatcggcatt
    21001 tgatgagttt tctactcccg ccgcgcgcaa atatttcgtc gacaagaaag aggccagcgc
    21061 gggtaatttt gccgacctgc tggcccactc tgacggtctg attaagaata tcagcgatga
    21121 tttgcgtgcg ctggacaaac tgatcgtcaa accgaacgcc gtgaatggag aactttcgga
    21181 agatgatatt cagctatttc cgctactgcg taatctgacg ctggtagccg gaatcaactg
    21241 gccaagccgc gttgctgatt accgcgataa tatggcgaaa cagacacaaa tcaatttgtt
    21301 atcatcaatg gcgatttaat cctgacccgc cgcggcagcc tgtattcgcg ggttgccgcc
    21361 gttttcagtt ttttctgctg gcgattttat cgctggtgac acatgctgcg ttgtgtcagg
    21421 atattgacgc agatttcatg tcgaggacta ccatgaacaa gtttttattt gccgctgcat
    21481 tgatcgtcag tggcctgctc gttggctgta atcaactcac ccaatacacc atcaccgaac
    21541 aagaaattaa ccagtcgctt gcgaaacata ataatttctc aaaagatatc ggtttacccg
    21601 gcgtggctga cgcccatatt gttctgacaa acttgaccag ccaaattggt cgcgaagagc
    21661 cgaataaggt taccctaacc ggagacgcca atctggacat gaactccctg ttcggtagtc
    21721 agaaagcgac catgaaactg aagctgaaag cgctgcccgt gtttgataaa gaaaaaggtg
    21781 cgatcttcct gaaagagatg gaagtggtcg atgcgacggt acaaccggaa aaaatgcaaa
    21841 cggtgatgca aacgttgctt ccctatttga accaggcatt acgcaattac tttaaccagc
    21901 aacctgctta cgtcctgcgc gaagatggca gtcagggcga agcaatggcg aaaaaactgg
    21961 cgaaaggcat tgaagtgaag ccaggcgaaa ttgtcattcc gtttacggat taatgacgag
    22021 ggcgcattcg cgccctttat ttttcgtgca aaggaaaacg tttccgctta tcctttgtgt
    22081 ccggcaaaaa catcccttca gccggagcat agagattaat gactgcacca tcccaggtat
    22141 taaagatccg ccgcccagac gactggcacc ttcacctccg cgatggcgac atgttaaaaa
    22201 ctgtcatgcc gtataccagc gaaatttatg gacgggctat tgtaatgccc aatctggctc
    22261 cgcccgtgac cactgttgag gctgccgtgg cgtatcgcca gcgtattctt gatgccgtac
    22321 ctgccgggca caatttcacc ccattgatga cctgttattt aacagattcg ctggatccta
    22381 atgagctgga gcgcggattt aacgaaggcg tgttcaccgc tgcaaaactt tatccggcaa
    22441 acgcaaccac taactccagc cacggcgtga cgtcaattga cgcaatcatg ccggtacttg
    22501 agcgcatgga aaaaatcggt atgccgctac tggtgcatgg tgaagtgaca catgcagata
    22561 tcgacatttt tgatcgtgaa gcgcacttta tagaaagcgt gatggaacct ctgcgccagc
    22621 gcctgactgc gctgaaagtc gtttttgagc acatcaccac caaagatgct gccgactatg
    22681 tccgtgacgg aaatgaacgg ctggctgcca ccatcactcc gcagcatctg atgtttaacc
    22741 gcaaccatat gctggttggt ggcgtgcgtc cgcacctgta ttgtttaccc atcctcaaac
    22801 gcaatattca ccaacaggca ttgcgtgaac tggtcgccag cggttttaat cgagtattcc
    22861 tcggtacgga ttctgcgcca catgcacgtc atcgcaaaga gagcagttgc ggctgcgcgg
    22921 gctgcttcaa cgccccaacc gcgctgggca gttacgctac cgtctttgaa gagatgaatg
    22981 ctctgcagca ctttgaagca ttctgttctg taaacggccc gcagttctat ggcttgccgg
    23041 tcaacgacac attcatcgaa ctggtacgtg aagagcaaca ggttgctgaa agcatcgcac
    23101 tgactgatga caccctggtg ccattcctcg ccggggaaac ggtacgctgg tccgttaaac
    23161 aataaaaatc gtagcttcct gttgtcatta ggttatttta cctgtataaa taaccagtat
    23221 attcaacagg gggctattat gcgaattgaa gtcaccatag cgaaaacttc tccattgcca
    23281 gctggggcta ttgacgccct ggctggcgaa ctttcccgcc gtattcagta tgcgtttcct
    23341 gataatgaag gccacgtatc ggtacgttat gccgcagcga ataatttatc ggttattggc
    23401 gtaacaaaag aagataaaca gcgcattagc gaaattctcc aggaaacgtg ggaaagcgcc
    23461 gatgactggt ttgtcagcga ataatatgca gtgatttttg tttttgccgg gtcgccccgg
    23521 cttttttatt ttacttacaa attttgagta caaaatttct acacttcctc aaaataattg
    23581 cacaatatgc taaaaaaata tgaatgacat gctgttttat tgttcatata aatcttaaaa
    23641 gcagaaattt atctgttccc ccctttaaaa attcggtgaa tacccttact tattggtata
    23701 ctgaagttgc ttcagataaa aacgcattga acctcgaata acgttgtcta gtaacacgaa
    23761 ttagggggcc atgatggaaa aaaataatga agtcattcag actcatccgc tcgtagggtg
    23821 ggacatcagc accgttgata gctatgatgc gctgatgttg cgtttgcact accagacccc
    23881 aaataagtcc gagcaggaag ggactgaagt tggtcagacg ctctggttaa ccactgatgt
    23941 tgccagacaa tttatttcga tattagaagc aggaatcgcc aaaattgaat ccggtgattt
    24001 cccggtaaac gagtatcggc gtcattaaca tgacatgacc atccacccaa aaggcacctc
    24061 accggtgcct ttaccatttc tgggttgtat atctgcattc agttaattac tctgcttaaa
    24121 ccatgagagc agagagaaaa aaatgaaata cgatctcatc attattggca gcggttccgt
    24181 aggcgctgcc gccgggtatt atgcaacccg cgccggttta aacgtgctaa tgaccgacgc
    24241 ccatatgcca ccgcatcaac acggcagcca ccacggcgat acgcgattaa ttcgccatgc
    24301 ttatggtgaa ggcgaaaagt atgtcccgtt ggtcctccgc gcgcaaacgc tgtgggatga
    24361 actttcccgc cacaacgaag atgatcccat ttttgtacgc tctggtgtca ttaacctcgg
    24421 cccggctgac tccgcatttc tcgccaacgt cgcccacagc gccgaacagt ggcaactcaa
    24481 cgttgaaaag ctcgatgcgc aagggattat ggcccgctgg ccagaaatac gcgtcccgga
    24541 caactacatc ggcttatttg agactgattc cggttttttg cgcagcgaac tggcgattaa
    24601 aacctggatc caactggcga aggaagcggg ctgtgcgcaa ctgttcaact gcccggtcac
    24661 cgcaattcgt catgacgatg atggcgtaac tattgaaacc gttgacggtg agtatcaggc
    24721 gaaaaaagcg attgtctgcg cgggaacatg ggtaaaagac ctgctcccgg agctgcctgt
    24781 ccagcctgta cgtaaagtat ttgcctggta tcaggccgat ggccgctata gcgtgaagaa
    24841 taaattcccg gcgtttaccg gtgaactgcc caatggcgat caatattatg gttttccggc
    24901 agaaaacgac gcgttgaaga ttggcaaaca taacggaggc caggttatcc attcagcgga
    24961 tgaacgtgtt ccgtttgcgg aagtggtcag cgatggttcg gaagccttcc cgttcttgcg
    25021 caatgtattg ccgggtatcg gttgctgcct gtacggcgct gcctgcacct atgataattc
    25081 gcctgacgaa gattttatta tcgataccct acccggccac gataatacac tgctcattac
    25141 cggcctgagt gggcacggtt ttaaatttgc gtcagtttta ggggaaatag ctgccgattt
    25201 tgcgcaagac aaaaaaagcg attttgattt gacgccattc aggctttccc gcttccaata
    25261 atcatcatta cggcctccag aatgaggccg tttttacagg agtatttaat gcgtcggctg
    25321 ttgcactatc tcatcaataa tattcgcgag catctgatgc tttatctttt tctctgggga
    25381 ttgttggcaa ttatggatct gatctatgtg ttttattttt agttttccgc actgacataa
    25441 actgacaaat atttaatctc cctttcattt agcgtgaaaa attgaatgag attattcctg
    25501 cttctacagc actcaccaga catctctgat gctgaaccca ctaaacttat gaagattctt
    25561 tcattattaa ttcaaaatta ttgaaataaa aataaatatc attcaatttg ttatttttgt
    25621 gttgcaattc attctccgac acgccatttt ctttctctcg caaattcgta ttggatgcac
    25681 ttatgtcatt cacaaatacc cctgaacgct atggtgttat atctgcggcc ttccattggc
    25741 taagcgcaat tattgtctac ggcatgttta ctttaggtct gtggatggtc acgctcagtt
    25801 attacgatgg ctggtatcac aaagcacccg aactgcataa aagcatcggt attttgttaa
    25861 tgatggggct ggttattcgc gttctgtggc gtgtcatatc tccaccgccg ggtccgctgc
    25921 cgagttattc gcccatgact cgtcttgccg caaaggctgg acatctcgca ttgtacctat
    25981 tgctgttcgc catcggcatc agcggctatc tgatctcaac tgccgatggt aaaccgatca
    26041 gcgtttttgg ctggtttgac gtccccgcga cccttgccga cgctggcgca caggcagact
    26101 ttgccggtgc cctgcatttt tggctcgcgt ggagcgtcgt agtactgtcc gttatgcacg
    26161 gatttatggc cctgaagcat catttcatcg ataaagacga cactctgaag cgcatgctgg
    26221 gaaagtcgtc atctgactat ggagtataaa aaatgaaaaa aagcctgctt ggtttaacct
    26281 tcgcgtccct gatgttctct gccggttcag cggttgccgc cgattacaaa attgacaaag
    26341 aaggtcagca cgcctttgtt aatttccgca tccagcacct tggctatagc tggttatacg
    26401 gcacctttaa agatttcgac ggtactttta cctttgacga aaaaaatccg gctgccgata
    26461 aagtgaatgt gacaattaac accaccagcg tcgatactaa tcacgccgaa cgcgataaac
    26521 atcttcgcag tgcagatttc ctcaataccg caaaatatcc acaggcaaca ttcacctcca
    26581 ccagcgtgaa gaaagacggt gacgaactgg atattaccgg cgatctgacg ctgaatggcg
    26641 taaccaaacc cgtcacgctg gaagcgaaat taattggtca gggcgacgac ccatggggtg
    26701 gtaaacgtgc aggcttcgag gccgaaggca aaattaagct caaggacttc aatatcaaga
    26761 cagatttagg tccagcttct caggaagtgg atctgattat ttcagtggaa ggcgtacagc
    26821 agaagtaagc gtgaaatgtt gccggatggc acgcatccgg caatgatatt tattctgttg
    26881 gatcaggaat gcccagtgtt gtattcagac gtccacgaga cttattaaag atcttattgc
    26941 cattttcacg tcctgcccga cggcgtcgct gttcttctgg cggtaacgcg ctttcttcgc
    27001 agcaaatctc actacaacaa cctttgtatt tttccgcgca tactggacac tgaataaaca
    27061 gcaggtggca gccatcattt ttacagttgg tatggctgtc gcacggcgcg ccgcactggt
    27121 ggcaatgcgc gataatctca tccgatatac gttcgcccat ccgctcgtca aaaacaaaat
    27181 ttttgccaat aaaacgcacc ggcaagccct gctcgcgcgc cttacgggcg tattcaataa
    27241 ttccgccctc gatatgccag actttgttga atccgttatg tttcatccaa gcactggcct
    27301 tttcacaacg aatgccgccg gtgcagtaca tgacgatttt tttatcttta tgtgcctgca
    27361 tcatctcgac tgcttttggc agctgctcac ggaaggtatc tgccggaatt tcgaacgcgt
    27421 tttcaaagtg ccccacttca tactcatagt ggttacg
//
LOCUS       DAJVUP010000040        27207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.040, whole genome shotgun sequence.
ACCESSION   DAJVUP010000040 DAJVUP010000000
VERSION     DAJVUP010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.040"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(39..1337)
                     /gene="eno"
                     /locus_tag="OQQ75_001569"
     CDS             complement(39..1337)
                     /gene="eno"
                     /locus_tag="OQQ75_001569"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HCS1975942.1"
                     /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG
                     SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN
                     KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA
                     DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS
                     NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF
                     LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG
                     IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI
                     KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA"
     gene            complement(1425..3062)
                     /gene="pyrG"
                     /locus_tag="OQQ75_001570"
     CDS             complement(1425..3062)
                     /gene="pyrG"
                     /locus_tag="OQQ75_001570"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HCS1975943.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY
                     INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK
                     ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM
                     AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA
                     NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
                     EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE
                     TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH
                     VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD
                     DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW
                     FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK"
     gene            complement(3290..4081)
                     /gene="mazG"
                     /locus_tag="OQQ75_001571"
     CDS             complement(3290..4081)
                     /gene="mazG"
                     /locus_tag="OQQ75_001571"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HCS1975944.1"
                     /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL
                     DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD
                     SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT
                     TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK
                     ANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL"
     gene            complement(4152..4487)
                     /gene="mazF"
                     /locus_tag="OQQ75_001572"
     CDS             complement(4152..4487)
                     /gene="mazF"
                     /locus_tag="OQQ75_001572"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="HCS1975945.1"
                     /translation="MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTG
                     MCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKRIAWRARGATKKGTVAPEELQLI
                     KAKINVLIG"
     gene            complement(4487..4735)
                     /gene="mazE"
                     /locus_tag="OQQ75_001573"
     CDS             complement(4487..4735)
                     /gene="mazE"
                     /locus_tag="OQQ75_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin MazE"
                     /protein_id="HCS1975946.1"
                     /translation="MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLII
                     EPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW"
     gene            complement(4813..7047)
                     /locus_tag="OQQ75_001574"
     CDS             complement(4813..7047)
                     /locus_tag="OQQ75_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HCS1975947.1"
                     /translation="MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQ
                     QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS
                     VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL
                     REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL
                     HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV
                     RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV
                     EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE
                     MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
                     FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG
                     RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK
                     PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF
                     ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD
                     ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
                     LHGS"
     gene            complement(7095..8396)
                     /gene="rlmD"
                     /locus_tag="OQQ75_001575"
     CDS             complement(7095..8396)
                     /gene="rlmD"
                     /locus_tag="OQQ75_001575"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HCS1975948.1"
                     /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL
                     LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR
                     SKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK
                     QCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREK
                     LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA
                     SALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ
                     NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA
                     TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK"
     gene            8453..11209
                     /gene="barA"
                     /locus_tag="OQQ75_001576"
     CDS             8453..11209
                     /gene="barA"
                     /locus_tag="OQQ75_001576"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase BarA"
                     /protein_id="HCS1975949.1"
                     /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA
                     GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH
                     LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI
                     ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR
                     GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN
                     VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI
                     ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL
                     NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR
                     DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR
                     GSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS
                     PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL
                     KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL
                     IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQ
                     QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE
                     VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGL
                     VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS
                     KILG"
     gene            complement(11441..12781)
                     /gene="gudD"
                     /locus_tag="OQQ75_001577"
     CDS             complement(11441..12781)
                     /gene="gudD"
                     /locus_tag="OQQ75_001577"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS1975950.1"
                     /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIMIIK
                     DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQ
                     TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKAT
                     PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE
                     SIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA
                     EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL
                     TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV
                     PEKPGLGVEIDMDQVMKAHELYQKHGLCARDNAMGMQYLIPGWTFDNKRPCMVR"
     gene            complement(12802..14142)
                     /locus_tag="OQQ75_001578"
     CDS             complement(12802..14142)
                     /locus_tag="OQQ75_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS1975951.1"
                     /translation="MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTD
                     NAGHTGIGEAPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA
                     WTFELHVNAVAALEAALLDLLGKALNVPVCELLGPGKQRETITVLGYLFYIGDRTKTD
                     LPYLENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT
                     VRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAE
                     FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLT
                     WGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP
                     DAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH"
     gene            complement(14144..15514)
                     /gene="gudP"
                     /locus_tag="OQQ75_001579"
     CDS             complement(14144..15514)
                     /gene="gudP"
                     /locus_tag="OQQ75_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GudP"
                     /protein_id="HCS1975952.1"
                     /translation="MFRSATTSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRAT
                     LSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWS
                     MFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSI
                     FNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQ
                     KELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYF
                     FITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKT
                     PIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSG
                     GLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIEL
                     KPVAGQ"
     gene            complement(15931..16380)
                     /locus_tag="OQQ75_001580"
     CDS             complement(15931..16380)
                     /locus_tag="OQQ75_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HCS1975953.1"
                     /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW
                     LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN
                     GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS"
     gene            complement(16398..17180)
                     /gene="truC"
                     /locus_tag="OQQ75_001581"
     CDS             complement(16398..17180)
                     /gene="truC"
                     /locus_tag="OQQ75_001581"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HCS1975954.1"
                     /translation="MLEILYQDEWLVSVNKPSGWLVHRSWLDRDEKVVVMQTVRNQIG
                     QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY
                     PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
                     KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT
                     IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS"
     gene            complement(17180..17509)
                     /locus_tag="OQQ75_001582"
     CDS             complement(17180..17509)
                     /locus_tag="OQQ75_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HCS1975955.1"
                     /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT
                     MEPLEWLQWVLIPRMHDLLNNNQPLPGAFAVAPYYEMALATDHPQHALILAELEKLDA
                     LFADDAS"
     gene            complement(18131..18676)
                     /gene="syd"
                     /locus_tag="OQQ75_001583"
     CDS             complement(18131..18676)
                     /gene="syd"
                     /locus_tag="OQQ75_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SecY-interacting protein"
                     /protein_id="HCS1975956.1"
                     /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST
                     TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ
                     TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
                     RKRTHLASNLAEFLNQLKPLL"
     gene            18744..19592
                     /gene="queF"
                     /locus_tag="OQQ75_001584"
     CDS             18744..19592
                     /gene="queF"
                     /locus_tag="OQQ75_001584"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HCS1975957.1"
                     /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL
                     KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ
                     TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY
                     EFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRQIDREKLLRY
                     LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST
                     TRLVRQ"
     gene            19704..21068
                     /gene="ppnN"
                     /locus_tag="OQQ75_001585"
                     /gene_synonym="ygdH"
     CDS             19704..21068
                     /gene="ppnN"
                     /locus_tag="OQQ75_001585"
                     /gene_synonym="ygdH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase"
                     /protein_id="HCS1975958.1"
                     /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS
                     GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR
                     DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
                     ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS
                     IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA
                     NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP
                     LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAF
                     SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY
                     EICT"
     gene            21625..22914
                     /gene="sdaC"
                     /locus_tag="OQQ75_001586"
     CDS             21625..22914
                     /gene="sdaC"
                     /locus_tag="OQQ75_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease SdaC"
                     /protein_id="HCS1975959.1"
                     /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN
                     AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT
                     LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM
                     IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM
                     VFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA
                     DLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK
                     SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY
                     AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS"
     gene            22972..24339
                     /gene="sdaB"
                     /locus_tag="OQQ75_001587"
     CDS             22972..24339
                     /gene="sdaB"
                     /locus_tag="OQQ75_001587"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase II"
                     /protein_id="HCS1975960.1"
                     /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR
                     VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPGFIQDVNTHGRLMLANGQ
                     HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ
                     DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG
                     GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC
                     IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK
                     IVACD"
     gene            24451..25206
                     /gene="xni"
                     /locus_tag="OQQ75_001588"
     CDS             24451..25206
                     /gene="xni"
                     /locus_tag="OQQ75_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417278.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease Xni"
                     /protein_id="HCS1975961.1"
                     /translation="MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTH
                     AVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNE
                     ADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGV
                     QPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKL
                     ETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR"
     gene            complement(25311..26448)
                     /gene="fucO"
                     /locus_tag="OQQ75_001589"
                     /pseudo
     CDS             complement(25311..26448)
                     /gene="fucO"
                     /locus_tag="OQQ75_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417279.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
     gene            complement(26476..27123)
                     /gene="fucA"
                     /locus_tag="OQQ75_001590"
     CDS             complement(26476..27123)
                     /gene="fucA"
                     /locus_tag="OQQ75_001590"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HCS1975962.1"
                     /translation="MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTG
                     IPYEKLTESHIAFIDGNGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVS
                     ILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIAC
                     EVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE"
BASE COUNT         6580 a         7296 c         6555 g         6776 t
ORIGIN      
        1 cccggaggct ggcattttta aatcagataa agtcagtctt atgcctggcc tttgatctct
       61 ttacgaccgt tgtacggtgc tttttcgccc agagcttctt cgatacgaat cagctggttg
      121 tatttagcaa cacggtcaga acggctcata gaaccagttt tgatctggcc tgcagcagta
      181 ccaacagcca ggtcagcgat ggtagcgtct tcagtttcgc cagaacggtg agagataact
      241 gcagtgtagc cagcatcttt cgccatcttg attgcagcca gagtttcggt cagagaaccg
      301 atctggttga atttgatcag gatggagtta gcgatacctt tttcgatacc ttctttcagg
      361 atcttggtgt tggttacgaa caggtcgtca ccaaccagct ggattttgtc gcccagaact
      421 ttggtctggt atgcgaaacc gtcccagtca gattcgtcca gaccgtcttc gatagaaacg
      481 atcgggtact gtttggtcag ttcttccagg aagtgagtga attcttcaga ggtgaacgct
      541 ttgttgcctt cgccagccag aacgtattta ccatctttgt agaattcaga agctgcgcag
      601 tccatcgcca gagtgatgtc tttgcccagt tcataaccag cagctttaac agcttcagcg
      661 ataacagcca gagcttcagc gttggaaccc aggttcggcg catagccacc ttcgtcacca
      721 acagcagtgt tcatgccttt cgctttcaga acttttgcca ggtgatggaa aacttcagaa
      781 cccatgcgga tggcttcttt cacagttttc gcgccaaccg gctgaatcat gaattcctgg
      841 atatcaacgt tgttgtcagc gtgctcacca ccgttgatga tgttcatcat cggaaccggc
      901 atagagtatt tgcccggagt accgttcagt tcagcgatgt gctcgtacag cggcatacct
      961 ttagcagctg cagcagcttt ggcgttagcc agagatacag ccaggattgc gttcgcgccg
     1021 aatttggatt tgttttcggt gccgtccagg tcgatcatga tcttgtcaat gccagcctga
     1081 tctttagcat ctttgccaat cagcgcctga gcgatcgggc cgtttaccgc agcaacagct
     1141 ttggttacgc ctttacccag gaaacgggat ttgtcgccat cgcgcagttc cagagcttca
     1201 cgggaaccag tagaagcacc tgacggagca gctgccatac cgacgaaacc accctccaga
     1261 tgtacttcgg cttcaacagt cgggttacca cgggagtcga tgatttcacg accgatgatt
     1321 tttacgattt tggacattag gttttcctca agtcactagt taaactgaaa ctccagacaa
     1381 acaacacgta cccagggtac gcgttgccgt tctaactttt ttacttactt cgcctgacgt
     1441 ttctggaact cgctggcggc tttcacaaag cctgcaaaca gcgggtgacc atcacgtgga
     1501 gtagaagtaa actccggatg gaactggcaa gccacgaacc acgggtgatt cggaacttcg
     1561 atgatctcga ccaactgatc atccccggaa cggcccgcaa cgcgcagacc tgcatcttca
     1621 atctgtttca acagcatgtt gttgacttcg taacggtgac gatgacgctc aacaattgtc
     1681 ggcgcattgt acagctggcg aaccaggcta tcgtcaacca actggcactg ctgtgcgccg
     1741 agacgcatgg taccgccgag atcgctcttc tcgctacgaa cttcaacgtt gccgttttca
     1801 tcgcgccact cggtaatcag cgccacaacc gggtacttac agtctggcac aaattccgta
     1861 gagttggcgt tctccatgtt ggcaacatgg cgagcgtaat caattaacgc cacctgcata
     1921 cccaggcaaa tgcccagata aggaatattg ttctcacgcg caaaacgcgc ggtcgtaatc
     1981 atgccttcta cgccacgata gccgaaaccg ccaggtacga ggattgcgtc cagaccttta
     2041 aggatttcaa cgccgcgcgt ttcaacatct tgtgaatcga tcagtttgat gttgacgctg
     2101 acacgattct tcagcccacc gtgtttcagt gcttcgatca ctgatttata agcatccggc
     2161 agttcaatgt acttgccgac cataccgatg gtgacttcac ttaccgggtt cgcttcttcg
     2221 aagataacct gttcccattc ggacagattc gcttccgggc agtttaagct gaatcgttta
     2281 caaatataat cgtccagccc ctgagatttc aacaggcccg gaattttata gatggaatcg
     2341 acgtctttca gagaaataac cgctttttcc ggaacattac agaacaatgc aatcttcgca
     2401 cgttcgttcg ccggaacagc gcgatctgaa cgacaaatca ggatgtcagg ctggataccg
     2461 atggagagca gctcttttac agagtgctga gtcggtttgg ttttgacttc accagacgct
     2521 gccatgtacg gcaccagcgt caggtgcata aacagagtgt gctcacggcc aatttcaaca
     2581 gccatctggc gaatcgcttc gaggaacggc aaggattcga tatcacctac tgtaccgccg
     2641 atttctacca gtactacgtc atgaccttcg ccaccttcca gcacgcgctc tttgattgcg
     2701 ttagtgatgt gcggaataac ctgcacggtt gcgccgaggt agtcaccgcg gcgttcttta
     2761 cgcagaacgt cagagtagat acgacccgtg gtgaagttgt tgcggcggct cattttggta
     2821 cgaatgaaac gctcgtagtg ccccaggtcc aggtcggttt cagcgccgtc ttcagtaacg
     2881 aacacttccc cgtgttggat tgggctcata gtacctggat cgacgttgat gtacggatcc
     2941 agtttcatga tggtcacatt gaggccacgg gcttcaagaa tggctgcgag ggaggctgcg
     3001 gcaatgcctt tacccagaga ggatacgacc ccgccggtca caaaaatata gttcgttgtc
     3061 atgctgaacc tgagaagtta ggttgaaaag acgatggaat aaccaggacg ggaaagcagt
     3121 atacccgaac atgacctgtg ccacaaactt tcattatccc tcctcttcgc cagcgcacta
     3181 ttgaaatcag gagtgagaaa atagcccctt tggggtaaat gtttttgacg caaatcaagc
     3241 gcttgtcatt taaaaaatga cacaaatggc acttgaccgc gtaattccct tagagatcaa
     3301 tttcctgccg ttttacctgt tgccagactt cttccattgt ttcgaggtca acacctgtca
     3361 tttccagtcc acgcgcggca acaatacgct ccacttcgcg aaaacgacgc tcgaattttt
     3421 cgttcgcttt ttgcaatgcg atttctgctt tcgtccctaa atggcgagcc agattaaccg
     3481 tggcaaacag caggtccccc atttcctcct ccagtttagc ctggtcgaca acagcctgcc
     3541 gcgcttcgta catcacctcg tcgatctctt cgtagacttt atcaaccacc gggccaagcg
     3601 tcgtccagtc gaagccaacg ttggcgcaac gtttctggat tttttgcgcc cgcattaaag
     3661 ccggtaaact acgaggaata tcgtccagcg ccgaatgctg cgctttctgc gcgcgctctt
     3721 cggttttgat ttgctcccaa cgggcaagca cttcactact gttttcggca gaactatcag
     3781 caaaaacatg cggatggcga cgctctaatt tatcgctaat agcagcgcaa atatcattaa
     3841 agtcaaagcg cccttcttcc tgagccattt gcgcgtaaaa caccacctgg aatagcagat
     3901 cgcccagttc accgcgaaga tcgtcaaaat cttcacgggc gatggcgtcc agcacttcgt
     3961 aggtttcttc aagggtgtaa ggcgcaatgg tggcaaatgt ctgctcttta tcccacgggc
     4021 agccgttttc cggatcgcgc aggcgctgca taatagtgag caaacgatcg atttgattca
     4081 ttgaattgtc ctgaaaattg cgggtctgtc aggtggaaac ctgtgaccag aatagaagtg
     4141 agttagtaac actacccaat cagtacgtta attttggctt taatgagttg taattcctct
     4201 ggggcaactg ttcctttctt cgttgctcct cttgcccgcc aggcgattct ttttacctga
     4261 tcagctaacg ctacgccatc acgttcctga ccggataaaa caacttcgaa cggatatcct
     4321 tttgattgcg ttgtacaagg aacacacaga cacatacctg ttttgttgtt gtacatgaaa
     4381 ggactcagga caacagctgg acgatgtcca gcttgctcgc taccttttgt cgggtcaaaa
     4441 tcaacccaaa tcagatcgcc catatcgggt acgtatcggc ttaccattac cagacttcct
     4501 tatctttcgg ctctccccag tcgatattct cgtggaggtt ttccggcgtg atgtcgttga
     4561 ccagttcagc aagcgtaaat acgggctctt tacgcactgg ctcaataatt aatttgccat
     4621 ccaccaggtc aatcttcact tcatcatcaa tattcagatt gagcgcctgc attaacgtag
     4681 ccgggatccg caccgccggt gaatttcccc aacgctttac gctactgtgg atcatcaccc
     4741 tttcctcaaa ccgctatcat atgtagatac agtatatatc aatctacatt gtagatacga
     4801 gcaaatttct gcctaactcc cgtgcaaccg acgcgcgtcg ataacatccg gcacctggtt
     4861 gagtttaccc agcacgcggc ccagcacctg caggttgtaa atctcaatgg tcatgtcgat
     4921 ggtcgccagt tgctgtttgg tgtcgctacg gctggcaacg ccaagtacgt tcaccttctc
     4981 gttggcgaga atggtcgtga tatcacgtaa caacccacta cgatcattag ccaccacgcg
     5041 gaccaccagc gaatatccgg cggagtagct ctcaccccat accgcgtcaa caatgcgttc
     5101 tggcgcatga gagcgcagtt ccgccagttg ttcgcaatcg gcgcggtgta ctgaaatacc
     5161 gcgcccctgg gtaatgaagc cgacaatctc atctccagga atcggctggc agcagcgcgc
     5221 gatgtggtgc atcaggttgc caacaccttc gactaccacg cgaccgttat ctttactgcg
     5281 gttttgcggc gtgtagcttt tttgctgaag ttgcttcagc gcggcggcgt cctgctcttc
     5341 ggcactcggc ttattaaatt gcgattgcag gaagttcacc atctgattga gacggatatc
     5401 cccgccacca atcgccgcca gcaactcgtc gacatcatta aagttgtaac gcggcagcag
     5461 atgtttttct gcttctttca ggctgatccc cagatgttcc agctcgtcgt caaggatttg
     5521 ccgcccagcc agaatgtttt tgtcacggtc ctgtttacgg aaccaggcgt gaattttcga
     5581 acgcccacgg ctggttgtga cgtaaccgag gtttgggttt aaccagtcac ggctggggtt
     5641 cggctgtttc tgggtgataa tttcaatctg gtcgcccatc tgcagctggt aggtgaacgg
     5701 cacaatgcgc ccgccaattt ttgccccgat gcagcggtgt ccgacatcac tgtggatgtg
     5761 gtaagcgaag tccagcggcg ttgatcccgc aggcaaatca acgacatcac ctttcggcgt
     5821 aaagacatac acccggtcgt caaagacctg gctgcgtact tcgtcgagca tttcgccgga
     5881 atcagccatc tcttcctgcc acgcaatcag tttacgcagc caggcaatcc ggtcttcatg
     5941 tcccgaacgt gcgccgccag ctgccgcgcc ctctttatat ttccagtgcg cagcaacacc
     6001 caactctgca tcttcatgca tctgtttggt gcggatttgg atctcaacgg ttttgccacc
     6061 tggccccaga accacggtat gaatagactg ataaccgttt ggtttcgggt tagcgacata
     6121 atcgtcaaac tcatccggca ggtggcgata gtgagtgtgc actatcccca gtgcggcata
     6181 acaatcctgt aaacgctcgg cgacaatacg taccgcacgc acatcaaaca gctcatcgaa
     6241 ggcgaggttc tttttctgca ttttgcgcca gatgctgtag atgtgtttcg gacggccata
     6301 cacttcagct ttaacgcctt cagctttcat ctcagcgcgc agatgaccga caaactcttc
     6361 gatatagtgt tcgcggtcga gacggcgttc atgcagcagt tttgcgatgc gtttgtattc
     6421 ggtcgggtgc agataacgga agcagtaatc ttccagctcc catttcagtt gcccaatccc
     6481 aagacggttc gccaacggcg cgtagatatt ggtgcactct tttgccgcca gtacgcgttc
     6541 atcttccggc gcatctttta cttcgcgcag atgagcaata cgctccgcca gtttgatgac
     6601 cacgcagcga aaatcatcga ccatcgccaa taacatccgg cgaacgttat cgacctgttc
     6661 ggaggaaaca gaatcagtgt gcgtcgcttt cagctggcgg atcgccgcca tatcacgcac
     6721 gccgtgaata aggttaacga cagacttacc gacgctctca cgcagcacat cttcgctgac
     6781 tacgttggca tcggccagag ggaacagcag cgccgcccgc agcgtgtcaa tgtccatact
     6841 taatgtcgag aggatctcca ccatctcaac accacgccac aataacagac tggcatccgg
     6901 atgcccctgc gtctgctgca gacaatacgc ccaggtttcg gctaagcact cacacgactt
     6961 ctggctggta atacccagac ttgcgatcca tttttccgga tcaaattcac cagccttatt
     7021 gatatgtgca cttcttaccg caaccattgt cctctccttt agggaccaga cctgccgaaa
     7081 tcggcaaatc gtaactattt aacgcgcgag aaaagtacca tcgattccag atgtcccgtg
     7141 tgtgggaaca tatccagcat cgccagtcgc gcaatggtat atcctgcttt taataacgct
     7201 tcgctatccc gagccagcgt tgcagggtta caggatacat aaactatacg aataggttcc
     7261 agttttataa tttgctgcat aacacctgcg gcacctgctc gcgccgggtc cagcaacact
     7321 ttatcgaagc cgtttttcgc ccacggctgc tttgtgacat cttcttcaag attttcgtga
     7381 taaaacgtca cattctgtaa gccattaaga cgcgcattct gctggccttt ttccaccagc
     7441 gccggaacac cttctacacc gaccacactg gcagcttgtg tcgccaatgg cagtgtaaag
     7501 ttgcccatac cgcagaacag atccagtacg cgatcttcag gttgcacatc cagccattcc
     7561 aacgcactcg ctaccatttt ttggttcaca cccgcattga cctgaataaa atcgcgcggg
     7621 ctaaaagtta agcgcaaccc gttagagtca taccagggca tctcaccaga gacggtttcg
     7681 agtatctcac tatcgggggc gagatacaga tccaggcctt cagaatgcga aaagcgttcc
     7741 agtttttcgc gatctgccga acttagcggt gcggtatggc gcaaaatcat cagcgtgccg
     7801 ctggttgcct gtaccagttc aacatgacca agatggcgca ttgcttgtaa gctgcccagg
     7861 catgccctga ctttgggcag caatgcttca agttggggca ctaaaatggg acattgttta
     7921 acgtcgacaa tgtcactgga gcccgctttg cgaaacccca tctgaagttg ctgtgttttc
     7981 ggtaagtagt tcagacttaa acgcgcgcga cggcgatagc cccagggaac atcggcgatc
     8041 acttcagaga cttcgtgttt cattaatcgg gcgagtgccg cacttttgct tcgctgctgt
     8101 aaatccacgc tggcgtgttg ttgctgacag ccgccgcata cgccaaaatg aggacagcgt
     8161 ggcgtttcgc gttccgggct atcgcttaac cggcgtacga ctttagcgcg ggcatactgt
     8221 tttttatctt cagtaacagt aacttccgcg ttttcctgcg gcaataatcc ggggataaat
     8281 agcgttttgc cgttatgtcg cgccacgccc tgaccaaaag agtcgaggtc gttgactgaa
     8341 acggttatga tctgacgcgt cgtcgtgcgt cgttttgcag agtagaattg cgccattggc
     8401 gagactttct caatttaaca gtgtgacctt aattgtcaca taacggaact ccatgaccaa
     8461 ctacagcctg cgcgcacgca tgatgattct gatcctggca ccgaccgtcc ttattggttt
     8521 attgctgagt atatttttcg tcgtgcatcg ctataacgac ttgcagcgtc aactggaaga
     8581 tgcaggtgcc agcattattg agccgcttgc agtttctact gaatatggca tgagcctgca
     8641 aaatcgcgaa tctatcggtc agttaataag cgtactgcat cgtcgccatt ccgatattgt
     8701 tcgcgcgatt tcggtttatg atgaaaataa ccgactcttt gtcacctcca attttcatct
     8761 tgatccctca tcaatgcagc tcggcagcaa cgtgccgttt cctcgccagc tcactgtcac
     8821 tcgtgacggc gatattatga tcctccgcac gccgattatt tctgagagtt actcccccga
     8881 cgaatcgccc agtagcgatg ccaaaaatag tcaaaatatg ttgggatata ttgcgcttga
     8941 gctggatctt aaatcggttc gcttgcagca atataaagag atctttattt ccagcgtgat
     9001 gatgctgttt tgtatcggta ttgcgcttat ttttggctgg cgcttaatgc gcgatgtaac
     9061 cggtccgatt cgcaacatgg tgaataccgt cgaccgcatc cgtcgcgggc aactcgacag
     9121 ccgggtggaa ggatttatgc tcggcgagct ggatatgctg aaaaacggta tcaactcgat
     9181 ggcaatgtcg ctggctgctt atcacgaaga gatgcagcac aatatcgacc aggcgacgtc
     9241 cgatctgcgt gaaacgctgg agcagatgga aattcagaac gttgagttgg atctggcgaa
     9301 aaagcgcgcc caggaagcgg cgcgtattaa atccgagttt ctggcaaata tgtcacacga
     9361 gctgcgtaca ccactgaatg gtgttattgg ctttacccgc ctgacgctga aaacagaatt
     9421 aacaccaacg cagcgcgatc acctgaatac gattgaacgt tcggcaaata atttgctggc
     9481 aattattaat gatgttctcg acttctcgaa actggaagca ggtaagctga ttctggaaag
     9541 tattccattc ccactacgca gcacgctgga tgaagtcgtt actctgctgg cacattcttc
     9601 tcacgataaa gggttggaac tgacgctcaa tattaaaagc gacgtgcctg ataacgtgat
     9661 cggcgaccca ctgcgattac agcaaatcat cactaacctg gtggggaatg caattaaatt
     9721 caccgagaat ggcaacattg atattctggt agaaaaacgt gcgctgagta ataccaaagt
     9781 gcagattgaa gtgcagattc gggataccgg cattggtatt cctgaacgcg atcaatcgcg
     9841 cttattccag gccttccgac aggctgatgc cagtatttcc cgccgtcatg gtggcaccgg
     9901 gctggggctg gtgattacac aaaaactggt taatgaaatg ggcggcgata tttcgttcca
     9961 tagccagccg aatcgcggtt caactttctg gttccacatt aatctcgatc tgaacccgaa
    10021 cattattatc gaagggccat ccacccagtg cctcgcaggt aagcgcctgg cctatgtcga
    10081 accaaactcc gcagcagcgc aatgcacgct ggatatttta agtgaaacgc cgctggaagt
    10141 ggtttatagc ccaacgttct ccgcgctgcc tcccgcgcat tacgacatga tgttgttagg
    10201 catcgcggtg accttccgcg agccgctaac aatgcaacat gagcgattag cgaaagcggt
    10261 atcgatgacc gatttcctga tgctggcact tccttgccat gcacaagtca atgctgaaaa
    10321 actcaagcaa gatggtatcg gcgcgtgtct gctgaaacca ttaacaccta cacgcctgtt
    10381 gcctgccctg acggaatttt gtcatcacaa acaaaacacg cttttgcctg taaccgatga
    10441 aagtaagctg gcaatgacag tcatggcggt tgatgacaac cccgctaacc tgaaacttat
    10501 cggcgcattg ctggaagata tggtgcaaca tgtggaactt tgcgatagcg ggcatcaggc
    10561 ggttgaacgg gcgaaacaga tgccgttcga tttgatctta atggatattc aaatgccgga
    10621 catggatggc attcgggcct gcgaactcat ccaccagctc ccccatcagc aacaaacgcc
    10681 ggttatcgcg gtaacggcgc atgcaatggc cgggcaaaaa gagaagctgc ttggcgcagg
    10741 gatgagcgat tatctggcga aaccgattga agaagagcga ttgcataatt tgttgttgcg
    10801 ctacaagcct ggcagcggta tttcctctcg cgtcgtgacg cccgaagtca acgaaattgt
    10861 ggtgaacccg aatgcgaccc tcgactggca actggcacta cgccaggcag caggaaaaac
    10921 cgatttagcg cgcgatatgc tgcaaatgtt actcgatttc ctgcctgaag ttcgcaacaa
    10981 agttgaggaa cagctggttg gagaaaaccc ggaaggcctg gttgatttga ttcataaact
    11041 gcatggcagt tgcggctata gcggtgtgcc gcgtatgaag aatctctgcc aactgatcga
    11101 acaacagcta cgtagcggta ctaaagaaga agatttggag ccggagctgc tggaactgtt
    11161 ggacgagatg gataatgtcg cgcgcgaagc cagcaaaatt ctcgggtaac ggacgtcttg
    11221 tcgagtagca atcggctttt tatgacgctg gtttcagatt ggtgacaaag tgcctgtgtt
    11281 tatgccggat gcggcgttaa cgccttatcc ggcctacaaa accaattaaa ttcaatgaat
    11341 taaaaaatga tgtagacctg atacatagca caacaggcta ttttgcgttt agcatcagtc
    11401 tcaagccggc tccagataga gccggttttg gttttctgtc ttaacgcacc atgcacgggc
    11461 gcttgttatc gaacgtccag ccaggaatca gatactgcat tcccatcgca ttgtcacgcg
    11521 cgcaaagccc gtgtttctga tacagctcat gggctttcat cacttgatcc atatcgattt
    11581 ctacacccag ccccggtttt tccggcacct gaaccagacc gcctttgatc tcaaacggtt
    11641 ctttggtcaa gcgctgattg ccttcctgcc aaatccagtg cgtatcaatc gcggtgattt
    11701 tacccggtgc agcggcggca acatgggtaa acatcgccag ggaaatatcg aagtggttgt
    11761 ttgagtgtga accccaggtc aggccaaatt catggcacat ttgcgccaca cgtaccgaac
    11821 cttgcatcgt ccagaaatgc ggatccgcca gcgggatatc aacggattgc agggagagcg
    11881 tatggcccat ctgccgccag tcggtggcga tcatattggt tgcggtcggc aggccagttg
    11941 cgcgacggaa ctctgccatc acttcacgcc cggagaaacc ttgctccgca ccacacggat
    12001 cttctgcata agccagcgac cctttcaggt atttaccaat tttaatcgct tcgttcagcg
    12061 accaggcacc gttaggatcg agcgtaatac gcgcctgcgg gaagcgttgc gccagtgcca
    12121 caatagactc ggcctcttct tccccggcca gtacaccgcc tttcagtttg aaatcgttga
    12181 agccatattt ttcatacgcc gcttccgcca ggcgcaccac cgcatccggc gtcatcgctt
    12241 cttcatgacg caggcgatac cagtcgcatg agtcatccgg ctggctttga tacggcagcg
    12301 gtgtggcttt gcgatcaccg acgaagaaca gataaccgag catttcgact tcgctacgct
    12361 gttgaccatc gcccagcagg gatgccacgt ttacccccag atgctgcccc agcagatcca
    12421 gcattgccgc ttctatcccg gtaactacat gaatagtggt acgcaaatca aatgtctgca
    12481 aaccgcgccc accagcatca cgatcggcaa aagtattacg caccagcgtc agaacgtttt
    12541 tgtattcacc cagcgtttta cctaccacca gcggaatcgc atcttccagc gttttacgga
    12601 ttttctcgcc gccgggaatt tcccctacgc cagtgtgacc agaattatct ttgataatca
    12661 taatattacg cgtaaagaac ggtgcgtgtg caccactcag attcatcagc atactgtcat
    12721 gacccgccac cgggatgacc tgcatttcag taacaacagg cgtcgtaaat tgagaactca
    12781 tatttatgtc ctttttcaga atcaatgacg gccgaaaacg ggacgtttac ggtcaaaggt
    12841 ccagccgggg atcaggtact gcatcggacc tgcgtcgtta cgcgcaccgc caggcagacg
    12901 tttataggcc tcatgtgcct tttgtacctg ttcccagtcc agttccacgc ccagaccggg
    12961 cgcatcagga acggcaattt ttccgttttt aatctccagc ggatttttgg tcaggcgaca
    13021 atcgccctcc tgccaaatcc agtgggtatc gatagcggta ggattacccg gtgccgccgc
    13081 gcccacatgg gtaaacatcg ccagagagat atcgaaatgg ttattagaat ggcagcccca
    13141 ggtcagcccc cagtcgtcgc aaagctgcgc cacacggact gcaccggaaa gcgtccagaa
    13201 gtgcggatcg gcaagtggaa tatctaccgc attgagcatc accgcatgac ccatttcgcg
    13261 ccagttggtg gcgatcatgt tagtcgcgac gggcaagccg gtcgcccgcc gaaactccgc
    13321 cataacttca cgaccggaga aaccctgttc tgcgccgcat ggatcttcgg cataggtaag
    13381 aacatcattc agccctttgc atagagaaat ggcttcatca agtagccagg caccgttggg
    13441 atcaacggta atccgcgcat cagggaagcg tttcttcaat gcacgaacag tgtcgatttc
    13501 ttgctcgcca ggtaacaccc cgcccttaag tttgaaatct ttaaagccat agcgatcctg
    13561 tgaggcttcc gccagacgca caacggcttc gctgttcatc gctttctgat ggcgcaactg
    13621 ataccactca tggttgcccg gcgtattttc cagataagga agatcggttt tggtccgatc
    13681 accgatataa aacagataac cgaggacggt aatagtctcg cgttgcttgc ctggccccaa
    13741 cagttcgcag accggaacat tcagcgcctt acctagcagg tcaagcaagg cggcttccag
    13801 cgccgccacg gcattaacgt gcaattcaaa agtccaggca cctttgccga aggtatcaaa
    13861 atcggctgcc tgattacctt tatgcacctg ctgaaccact ttattcaggc gcgcaacttc
    13921 ctggcccaga accatcggaa tagcatcgac cagtgtttga taaatcacct ctccgcccgg
    13981 cgcttcacca atgccggtat gcccggcgtt atcggtgagt accacaatat tgcgggtgaa
    14041 atatgcgtta tgtgccccac caatattaag caacatgcta tcgtgcccgg cgaccggaat
    14101 gactttcata tcagtaataa caggactgga ttgtgtcgtc atcttattgc cccgcgacag
    14161 gtttcagctc gatacgcttg atatcgccca ccagcaccag gtagctcagt accgcgatta
    14221 aggcatgaac accaacataa atcagcgccc cattaaagga gccagtcgtg ccaacgatat
    14281 aaccaattgc gattggcgtg acgatgccag aaatgttacc gaacatgttg aacaggccac
    14341 cggaaagacc gctgatctct tttggcgcgg tatctgccat tactgcccaa cccagcgccc
    14401 cgatgccctt accgaagaag gccagcgcca taaagccgat gatcatccac tcaacgttga
    14461 cgtagttgca gaacaccatc accatcgaca gcaacatgcc cattacgatc ggtgttttac
    14521 gcgcaatgtt cagcgatccc gtgcggcgca tcagccagtc ggaaataatc ccacccagca
    14581 caccgccgat aaaaccgcaa accgccggaa cggaagccac aaagcccgct ttcagaattg
    14641 acatcccacg cgcctgcacc agataaaccg gaaaccaggt aatgaaaaag taagtcaggg
    14701 cgttgataca gtactgaccg atataaacgc cgatcatcat ccgtgacccg agcagttgtt
    14761 tgatctgccc ccacttcacg ctgaacggca ctttaacttt ggtgttttgc tgatccatat
    14821 tgatcagcgc gccacccgcg gcgatgtact ccagctcttt ctgatttacc cccggatgtt
    14881 gatttggctc gtggatgact ttcaaccaga taaagctgat gacaatcccc agaccgccca
    14941 taaagaagaa gacgtgtgac cagcccactt catgcgtcag ccagcccata atcggcgcga
    15001 agatcaccgt tgcgaagtat tgagcggagt taaaaatcga caccgccgtt cccctttcct
    15061 gcgccggaaa ccaagccgca acaatgcgac tgttgccggg gaaagatggc gcttcagcaa
    15121 gcccgaccag gaagcgcaga gtaaacaggg caacgataat gccgaatcca ctaaagatat
    15181 cgacgaagcc ttgcagcaag gtaaacatcg accagataaa gatcgaccag aagtagacgc
    15241 gttttgaacc aaaacgatcc agcaaccaac caccagggat ctgcccgata acataagccc
    15301 atgagaaggc agagaacaca tagcccattc ccacgggatc aaggccgata tctttggcca
    15361 tttccgaacc ggcaatagaa agcgtagcgc ggtcgccgta gttgaaggat gtgacgataa
    15421 acaacatcac cactatccag taacgagcat tcgtgcgttt ttccacactg ctcgcagcct
    15481 gacttaaaga actcgttgtt gcactcctga aaattcgcgt tagccacgct aactctggac
    15541 tgcgacatag ccaggaaatc agaggtgacg tagggtgttt tttgccgttt ttataggtcg
    15601 ttcgccgaat acggcgcgtg tttatatctg gcaatagcag tataaaaagc gcgccatagc
    15661 ggctcaccgt gcaacaacac aacattaatg cgttcaatga ggcccgattt tggcattagc
    15721 cctggacggt ggaatccact tcacggaaat gaaaacaaga acaagaaagg aagggttaaa
    15781 acgaagaaat aaagaagagt atgaaatgga tcgcttgact ccaggcaaac gccagtaaaa
    15841 atccgcgcta tgaagcagtt tttactggca tttgcctgaa aagattcgat tcagcaccgc
    15901 taaaacgaca tttaccgctc gctgaacata tcaggacaac agcgtgcccc actgttcgac
    15961 ccacggattt gattccgttt ccggttccgg gttctcactg gcgtcaatca acagcatttc
    16021 gccaactcgc tgagcgctct gttcctgcaa caaggcatcg aactgtttgc cgccattgca
    16081 gaaatttaca taactgctgt cgccgagcgc aatcacgcca taacgcagat tcggctggaa
    16141 gcccagacta tctttgattc cctgaaagag cggcacaatg ctatcaggaa ggtcgccctg
    16201 cccggtcgtg gacgtaacca ccagaacata cttatcctga taaggcagcc agtcgcttaa
    16261 ttcaggatct tcaaataccg ttgctttgtg gccctgtgcg gtcagaattg cttctgcttc
    16321 ttccgccact aacagcgaat ttccgtacat ggtgccgaca aaaataccaa tttccgccat
    16381 accgttttct ccctggatta ggaacttatc tctccatcct gacccgatgg cgcactgaac
    16441 tcaacccttt cattttcagg aagcagaccg cgccagccaa attgtgataa cgcctgcatc
    16501 caggtgtcgt ccaggcccgc gtgaatagtc agcggctcgc cagtaaaagg atgcgtcaat
    16561 gacaactgac tggcatgtag cattaaccgc tggaggccaa aatgctcagc accgctgcga
    16621 ttctggcgta aatcgccatg tttgctatcg ccaataatcg gatgacgcaa atgggcaaga
    16681 tgtcggcgaa gctgatgttt gcgtccggtt ttcggctcca gttccaccag gccgtagcgc
    16741 gtggtcgggt aacgtccggt cgctaccggc atttctacgg tcgccagacc gcgataatgc
    16801 gtcactgctg gctgcgggcc tttatcttcg cgggcaaatt tatcagcgat tttgtccagt
    16861 tcttccacca gtggataatc cagcaccgct tcttccatca accagccgcg cacaatcgca
    16921 tggtaacgtt tctggatttg gtgctgttca aactgttgtg ccagcagccg tccggcctcg
    16981 ctggataatc ccatcaacaa cacaccagaa gtgggtcggt ccagacgatg agcagtaaaa
    17041 acatgctgtc ctatctggtt acgcacggtt tgcatgacca ctactttctc gtcgcgatcc
    17101 agccagctac ggtgaaccag ccagccggag ggtttattta ccgaaaccag ccattcatcc
    17161 tgatagagta tttccagcat tagctcgcat catccgcaaa aagagcatcc agtttttcca
    17221 actcagccag aataagcgcg tgttgcggat ggtccgtcgc cagcgccatt tcataatagg
    17281 gtgcaacagc aaaagcgccc ggtaacggct ggttgttatt taacaaatcg tgcattcgcg
    17341 ggatcagcac ccactgcaac cactccagtg gttccatggt gtccataaag aacggttggg
    17401 tactattaaa ttgatgcggc tggggttcat cgtttcgcca gtgctgatgt tcacgcagta
    17461 acgcttcaag cgcctgcaac tggagacgaa cgcggtcatg agtggtcata aagcaacctc
    17521 aataagaaaa actgccgcga aggatagcag gaataaaaaa agggagcact gtattcacag
    17581 cgctcccggt tcgtttcgca gcattccagc tacttttgtt gctccctgct catccttgac
    17641 aacttttcct ctggccttgc ggccaatcgt tcatcctgaa ctattgcttc ctgctcacac
    17701 caccccgatg tgatacttca tcctgaagtg tccttggcct tcctgaccag ccgaatcatc
    17761 ctgaccggtt ctcattctcc atcctggagg tgtcctttaa cgcgtcctgc gtcatcctct
    17821 tcgcttcatc cagaagcctt tccctgaaac accatcctgg tgtgtcctgc agaagtgtca
    17881 tcatcctgat gttcacttcg ttgtctgact ccctgtcgac gaagatagaa tcgtcttttt
    17941 cgcgaagtct tacaaggcgc ttacagacaa tgccttaagg aaaatttcat atgaaagtta
    18001 agaattaaca atcaacattt tgattttaaa tgaaaataac gattcttatc tttttaagta
    18061 ttcgcttatt tcctggcgat ctcctacaga gtctgtaaga gatctctcac aaccagatgg
    18121 ggtatttgga ttacagaaga ggcttaagtt gattaaggaa ttccgcaaga tttgaggcta
    18181 aatgcgtccg tttacgtgtt cccagcgtct ctttgcacac ttcaccggag agattacaca
    18241 ccgagatgac ctctaactct tcttccagcg tcgcgataaa tagcgtgggc ggcagtttta
    18301 gccttttctg agtcaccaga tgaccaatca gattttcctg cacccgacgg aagtcgtctt
    18361 cactccaggt ttgcagcaat gtcagtttga tatcgccaaa ctgcgcgtgc atatccccgg
    18421 caaactgagt cgtataaaag gtatgaattg tgggttgtat cacaatatca aaagcgcgtt
    18481 caaccgcgtt tacattttgt tccccggtaa acggctgggg ttgccagtat acggcatctt
    18541 cggtagttga aataatgcac ggtgaaggaa caccgtacag ttcctcactt aacggccagc
    18601 ttttatgctc ttcatgccac gcatcgcagt agcgtgcagt aaaatctttc agggcttgtg
    18661 cggtcaaatc gtccactaat ttctctcttc acttaaacca gatacacttg tcgtttagtt
    18721 tatctggttt atgacggtga aacatgtctt cttatgcaaa ccatcaggca cttgcgggcc
    18781 tgactcttgg aaaatcaacc gattaccggg atacctatga cgccagccta ctgcaaggcg
    18841 ttccacgcag cctgaatcgc gacccgctgg gtctgaaagc ggataacctg ccttttcacg
    18901 gtacggatat ctggacgctg tatgaacttt cctggctgaa tgcgaaaggt ttgccgcagg
    18961 tcgctgtcgg tcatgttgaa cttgattaca ccagcgtaaa tctgattgag tcgaagagtt
    19021 ttaagctcta tctcaacagt tttaaccaga cgcgttttaa taactgggat gaggtgcgcc
    19081 agacgctgga gcgcgactta agcacttgcg ctcagggtaa gattagcgtg gcgttatatc
    19141 gtcttgatga actggaaggc cagccgatag gtcattttaa tggcacttgc attgatgacc
    19201 aggatatcac tatcgataac tatgaattca ctactgacta tctggagaat gccacctgtg
    19261 gtgaaaaagt agtggaagag acgcttgtca gccacctgct gaaatcaaac tgcctgatca
    19321 cccatcaacc agattggggt tcgatccaaa ttcagtatcg tggacgccaa attgacagag
    19381 aaaaactgct gcgttacctg gtctcattcc gtcatcacaa cgagttccac gaacagtgcg
    19441 tggaacgcat ctttaatgac ctgttacgct tctgccagcc agaaaaattg agcgtttacg
    19501 cacgttatac ccgtcgtggc ggtctggaca ttaacccgtg gcgcagtaat agcgattttg
    19561 tcccatcgac cacaagactg gttcggcaat aaattttttc tcaattttgc gtgctggatt
    19621 cacgcagaag gttgtgaaag gtcatcaggc agggctattg taatcaaagg gaatgacgat
    19681 attcgtccca taaggagttt ttcttgatta cacatattag cccgcttggc tccatggata
    19741 tgttgtcgca gctggaagtg gatatgctta aacgcaccgc cagcagcgac ctctatcaac
    19801 tgtttcgcaa ctgttcactt gccgtactga actccggtag tttgaccgat aacagcaaag
    19861 aattgctgtc tcgttttgaa aatttcgata ttaacgtctt gcgccgtgaa cgcggcgtaa
    19921 agctggaact gattaatccc ccggaagagg cttttgtcga tgggcgaatt attcgcgctt
    19981 tgcaggccaa cttgttcgcg gtcctgcgtg acattctctt cgtttacggg caaatccata
    20041 acaccgttcg ttttcccaac ctgaatctcg acaactccgt ccacatcact aacctggtct
    20101 tttccatctt gcgtaacgct cgcgcgctgc atgtgggtga agcgccaaat atggtggtct
    20161 gctggggcgg tcactcaatt aacgaaaacg agtatttgta tgcccgtcgc gtcggaaacc
    20221 agctgggcct gcgtgagctg aatatctgca ccggctgtgg tccgggagcg atggaagcgc
    20281 cgatgaaagg tgctgcggtc ggacacgcgc agcagcgtta caaagacagt cgttttattg
    20341 gtatgacaga gccgtcgatt atcgccgctg aaccgcctaa cccgctggtc aacgaattga
    20401 tcatcatgcc agatatcgaa aaacgtctgg aagcgtttgt ccgtatcgct cacggtatca
    20461 ttatcttccc tggcggtgtg ggtacggcag aagagttgct gtatttgctg ggaattttaa
    20521 tgaacccggc caacaaagat caggttttac cattgatcct caccggcccg aaagagagcg
    20581 ccgactactt ccgcgtactg gacgagtttg tcgtgcatac gctgggtgaa aacgcgcgcc
    20641 gccattaccg catcatcatt gatgacgccg ctgaagtcgc tcgtcagatg aaaaaatcga
    20701 tgccgctggt gaaagaaaat cgccgcgaca caggcgatgc ctacagcttt aactggtcaa
    20761 tgcgcattgc gccagatttg caaatgccgt ttgagccgtc tcacgagaat atggctaatc
    20821 tgaagcttta cccggatcaa cccgttgaag tgctagctgc cgacctgcgc cgtgcgttct
    20881 ccggtattgt ggcgggtaac gtaaaagaag tcggtattcg cgccattgaa gagtttggtc
    20941 cttacaaaat caacggcgat aaagagatta tgcgtcgtat ggacgacctg ctacagggtt
    21001 ttgttgccca gcatcgtatg aagttgccag gctcagccta catcccttgc tacgaaatct
    21061 gcacgtaatc tcccctcccc cggtgacgtt tgttgccggg ttttctcgtt tttggtcact
    21121 tactcatcaa ctcatttcat ttgttatatg aatgtttctt accaccctca cgcgacaaat
    21181 atcatcacag ttaatatgtc atacaattta tgttgcaacg caaacgtttt cctattttca
    21241 taaaccgtat tttatcgcta tgaaaaagaa attatcgcca tgattaacta aaagtattga
    21301 ttttttcagt tcaacctaca tatattgcgc gccctggaag aagtcagatg tcgtttaatg
    21361 ggcaaatatt gcccttaaat tctcttttac ttttgattta cagagtaaag cgttgggata
    21421 atctatcttc caagtagatt attgtatttg agatcaagat cactgataga tacataactt
    21481 gtgtgtatct ttccgccctc aaattattac ggcggtaaat gattaagcca tcgccgatag
    21541 acagatttca tttttacggt caggcacctt cccgggctga actggctaaa agctgaatta
    21601 tttgcattcc tccaggagaa atagatggaa acgactcaaa ccagcacgat tgcgtcgaaa
    21661 gactctcgta gtgcctggcg caagacagac accatgtgga tgctgggcct ttacggcacg
    21721 gcaatcggcg cgggcgtgct gttcctgcca atcaacgccg gtgttggcgg tatgatcccg
    21781 ctgatcatca tggctatcct tgcgttcccg atgacgtttt ttgctcaccg cggcctgact
    21841 cgcttcgtac tgtctggtaa aaacccgggc gaagacatca ccgaggttgt agaagaacac
    21901 tttggtattg gcgcaggtaa actgattacc ctgctctact tcttcgctat ctacccgatc
    21961 ctgctggttt atagcgtggc aatcaccaat acagttgaaa gcttcatgtc tcaccagctg
    22021 ggtatgacgc caccgccgcg tgcgattctg tcgctgatcc tgatcgtggg tatgatgacc
    22081 atcgttcgct tcggtgagca gatgatcgtt aaagcgatga gtattctggt gttcccgttt
    22141 gttggcgtat tgatgctgct ggctctgtac ctgatcccgc agtggaacgg cgcagcactg
    22201 gaaacgctgt ctctggacac tgcatctgca accggaaacg gtctgtggat gaccctgtgg
    22261 ctggcaattc cggtaatggt gttctcgttc aaccactctc cgatcatctc ttctttcgcc
    22321 gttgcgaagc gtgaagagta cggcgatatg gcagaacaga aatgctcgaa gatcctggca
    22381 ttcgcacaca tcatgatggt gctgaccgta atgttcttcg tcttcagctg tgtactgagc
    22441 ctgactccgg cagacctggc tgcggctaaa gagcagaaca tctcgattct gtcttacctg
    22501 gctaaccact ttaacgcacc ggttatcgcg tggatggctc cgattatcgc gattatcgct
    22561 atcaccaaat ccttcctcgg ccactacctg ggcgcacgtg aaggcttcaa cggtatggtg
    22621 attaaatctc tgcgtggtaa aggtaagtct atcgaaatca acaagctgaa ccgtatcact
    22681 gcgctgttca tgctggtaac gacctggatt gttgccaccc tgaacccgag catcctgggt
    22741 atgattgaaa ccctgggcgg tccaatcatc gcgatgatcc tgttcctgat gccgatgtac
    22801 gcaattcaga aagtaccggc aatgcgtaag tacagcggtc acatcagcaa cgtattcgtt
    22861 gtcgtgatgg gtctgattgc aatctccgca atcttctact ctctgttcag ctaagtcctt
    22921 tcgcgccgct ttcgggcggc gcttcctccg ttttaacgcg atgtatttcc tatgattagc
    22981 gtattcgata ttttcaaaat cggcattggc ccttccagtt ctcataccgt tggaccaatg
    23041 aaagcgggta aacaatttac cgacgatctg attgcccgta acctgcttaa agacgtgacc
    23101 cgcgtggtgg ttgacgtgta cggctcgctc tctctgaccg gtaaaggcca ccacactgat
    23161 atcgccatta ttatgggcct ggcgggtaac ctgccggata ccgtggatat cgattccatc
    23221 cctggtttta ttcaggatgt gaatactcat ggtcgcctga tgctggcaaa cggtcagcat
    23281 gaagtggagt tcccggttga tcagtgcatg aacttccacg ccgacaacct ttctctgcat
    23341 gaaaacggta tgcgcattac cgcgctggcg ggcgataaag tcgtttacag ccagacttac
    23401 tactctattg gcggtggctt tatcgttgat gaagagcatt ttggccagca ggatagcgca
    23461 ccggttgaag ttccttatcc gtacagttca gcagccgatc tgcaaaaaca ttgtcaggaa
    23521 accgggctgt cactctctgg cctgatgatg aaaaacgagc tagcgctgca cagcaaagaa
    23581 gagctggaac agcacctggc gaacgtatgg gaagtcatgc gtggcggtat tgagcgcggt
    23641 atttccaccg aaggcgtgtt gcctggcaaa ctgcgcgttc cacgccgtgc tgcggcacta
    23701 cgccggatgc tggtcagcca ggataaaacc accactgacc cgatggcggt tgttgactgg
    23761 atcaacatgt ttgcactggc agtgaacgaa gagaacgctg ctggcggacg cgtggtgact
    23821 gcgccgacta acggtgcgtg cgggattatc ccggcagtgc tggcgtacta cgacaagttt
    23881 atccgcgaag tgaacgctaa ctcactggct cgttacctgc tggtagccag tgccattggt
    23941 tctctttata agatgaacgc gtcaatttct ggtgctgaag tcggctgcca gggtgaagtt
    24001 ggtgtggcgt gctcaatggc ggcggctggt ctggcagaac tgttaggtgc aagcccggcg
    24061 caggtgtgca tcgcggcgga aatcgccatg gagcacaacc tcggtctgac gtgtgacccg
    24121 gtcgccggac aggtccaggt gccatgcatc gagcgtaacg ccattgcggc agtaaaagcg
    24181 gtgaacgccg cacgtatggc gctacgccgt accagcgagc cgcgcgtctg cctcgataaa
    24241 gttatcgaaa ccatgtacga aacaggtaaa gatatgaacg ccaagtaccg cgaaacctct
    24301 cgcggcggcc tggcaatgaa gatcgttgcc tgcgattaat cgctctccag aggcctcgtt
    24361 ttgcgaggcc tcttcccgat ttctcatcca gccgtagcct gttccggcat cgaatgttac
    24421 ccttatcgcc tgatctttaa gggggttatc gtggctgttc atttgcttat tgtcgatgca
    24481 ctgaatctta ttcgtcgcat tcatgccgtt cagggatcgc cctgtgtcga aacctgccag
    24541 catgcgctcg atcagctcat tatgcacagc cagccaaccc acgcggtcgc cgtttttgat
    24601 gatgaaaacc gcagtagcgg ctggcgtcat cagcgtttac cagattacaa agcgggtcga
    24661 ccgccaatgc cggaagagtt gcacgacgag atgcctgcat tacgcgccgc ctttgagcaa
    24721 cgcggcgtcc cgtgctggtc aaccagcggc aacgaagccg atgacttagc cgccacgctg
    24781 gcggtcaaag tgacacaggc cgggcatcag gcaacgattg tttcgacaga taaaggctac
    24841 tgtcagttac tttcaccgac attacgtatt cgtgattact tccagaaacg ttggctggat
    24901 gcgccattta tcgataaaga atttggcgtt caaccgcagc agttgcccga ttactgggga
    24961 cttgcgggga tcagcagttc aaaggtaccg ggtgttgcgg gaatcggacc aaaaagcgcc
    25021 acgcagctgc tggtcgagtt tcagagtctg gaagggatat atgagaatct ggatgcggtt
    25081 gccgaaaagt ggcgcaaaaa attagaaacc cataaagaga tggcgtttct gtgccgcgat
    25141 attgcccgct tacaaaccga tttgcatatc gacggcaatt tacagcaatt gcggttggta
    25201 cggtaacggc gagccggatg caaacgatta tcaacacatt gaatttaatg cacttatata
    25261 ccggataaga cgcggctagc gtcgtatccg gcattatcac atcagcgcat ttaccaggcg
    25321 gtatggtaaa gctctacaat atcctcaagc gttgcttcac gcgggttgcc accggtacaa
    25381 acatcatcca gtgccgcctg cgccagtgcc ggaatgtctt ccttgcgtac accaacatca
    25441 cgcaaatgtg gcggaatacc gacatcacgg ttgagagcaa acaccgcttc aacagcggca
    25501 ttacgcgcct cttccagcca ctttcacgcc cataacgcgc gcgatatcgc ggtacttctc
    25561 accggtaaag tcagcgttat agcgcatgac atgcggtaac aggatggcgt tcgcaacacc
    25621 gtgtggagtg ttgtaaaacg cgcccagtgg atgcgccata ccatgcacca accctaaccc
    25681 aacattcgag aagcccatac ccgcaacata ctgcccgagc gccatttctt ctccggcatc
    25741 cttatcacca gcaaccgatc ctcgcagcgc cccagcaatg atttcaatcg ctttaatgtg
    25801 cagtgcatcg gttagcgccc acgcgccacg ggtaatatac ccctcaatag catgagtgag
    25861 cgcatcgaca cccgtcgcag ctttcagcgc tggaggcata ccatccatca tgtcagcgtc
    25921 aataaacgcc acctgcggga tatcatgcgg atcaacgcaa acaaacttgc gccgtttctc
    25981 ttcgtcagtg atcacgtagt taatggtcac ttctgccgca gtacctgctg tggtaggaat
    26041 tgccagaatc ggtacactgg gtttattggt cggggaaagc ccttccaggc tacgcacatc
    26101 ggcaaactcc gggttgttgc tgataatgcc aatcgcttta caagtatcct gtggagaacc
    26161 accaccaata gcgatcaggt aatccgcgcc gctattctgg aatacaccga gcccttcttt
    26221 gacgacagta attgttgggt tgggcactac gccgtcgtaa atcgcccatg ccagccctgc
    26281 agcatccatc ttatcggtca ctttcgccac cacgccgcat tgcaccagcg ttttatcggt
    26341 gacgatcagc gccttctgat aaccacggcg tttcacctca tcggttaaag ccccaacagc
    26401 accccgacca aaccatgccg tttcgttcag aatcattctg ttagccatca tccttctcct
    26461 tgttgcttta cgaaattact cttcaatccg taacccatag gttttgaatt tctccagcac
    26521 tacggcaatc tcttcatcgc tcagcactgg caccgggtcc gtaatcgcca gggtcgtcag
    26581 gtaaagttgc gccagcactt caacttcatg cgccagccat aacgcttttt ccagattcac
    26641 ctcacaagcg ataagcccat gatgttgtaa caaagttgcc ttacgatttt tgagagccag
    26701 cgcaacatgt tcagaaagtt cgcgtgttcc aaaggtcgca taaggcgcgc aaggaataga
    26761 attaccacct gccgccgcaa tcatgtagtg aatagcgggg atcggtcggt taagaatgga
    26821 aactgctgtg caatgaacgg catgattgtg aacaaccgcg ttggcatccg gtctgctttg
    26881 ataggccgcc atatggaaac gccattcgct tgaggggagc tttccttcct catgtttacc
    26941 gttaccatca ataaaggcaa tatgcgactc cgtcagtttt tcatatggaa tgcctgtagg
    27001 cgtaatcagc atcccatcct gataacgtac actgacgttc cccgctgtcc cctggttcag
    27061 tcccaggcgg gtcatttcca ggcaagtgtc aataatctga cgagcaagtt tatttcgttc
    27121 cattagctac ctctctctga ttcaaaacag ggcaataatg ttgttccttt cacactattg
    27181 aattagccgt ttaattaccc accatat
//
LOCUS       DAJVUP010000041        26815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.041, whole genome shotgun sequence.
ACCESSION   DAJVUP010000041 DAJVUP010000000
VERSION     DAJVUP010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 26815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.041"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..326)
                     /gene="rpnB"
                     /locus_tag="OQQ75_001591"
     CDS             complement(<1..326)
                     /gene="rpnB"
                     /locus_tag="OQQ75_001591"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS1975963.1"
                     /translation="MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTT
                     LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA
                     MQNHLDA"
     gene            complement(523..1296)
                     /gene="hisP"
                     /locus_tag="OQQ75_001592"
     CDS             complement(523..1296)
                     /gene="hisP"
                     /locus_tag="OQQ75_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter ATP-binding protein
                     HisP"
                     /protein_id="HCS1975964.1"
                     /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK
                     STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
                     LWSHMTVLENVMEAPIQVLGLSKQEAHERAVKYLAKVGIDERAQGKYPVHLSGGQQQR
                     VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
                     STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK"
     gene            complement(1304..2020)
                     /locus_tag="OQQ75_001593"
     CDS             complement(1304..2020)
                     /locus_tag="OQQ75_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1975965.1"
                     /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL
                     AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGIYTLEIVKGTEFLNAFFRSGL
                     NCTVLALTLNTCAYTTEIFAGAIRSVLHGEIEAARAYGFSTFKMYRCIILPSALRIAL
                     PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI
                     SLFRRAEKRWLQHVKPSSTH"
     gene            complement(2017..2703)
                     /gene="hisQ"
                     /locus_tag="OQQ75_001594"
     CDS             complement(2017..2703)
                     /gene="hisQ"
                     /locus_tag="OQQ75_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012124147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter permease HisQ"
                     /protein_id="HCS1975966.1"
                     /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL
                     SGLIFEGYTTLIRGVPDLVLMLLIFFGLQIALNTVTEAMGVGQIDIDPMVAGIITLGF
                     IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQV
                     ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR
                     YSVGVKRADL"
     gene            complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="OQQ75_001595"
     CDS             complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="OQQ75_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter substrate-binding
                     protein HisJ"
                     /protein_id="HCS1975967.1"
                     /translation="MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNS
                     QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
                     IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV
                     SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG
                     MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG"
     gene            complement(3796..4578)
                     /gene="argT"
                     /locus_tag="OQQ75_001596"
     CDS             complement(3796..4578)
                     /gene="argT"
                     /locus_tag="OQQ75_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/arginine/ornithine ABC transporter
                     substrate-binding protein ArgT"
                     /protein_id="HCS1975968.1"
                     /translation="MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDA
                     KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE
                     IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV
                     AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG
                     VGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD"
     gene            complement(4844..5413)
                     /gene="ubiX"
                     /locus_tag="OQQ75_001597"
     CDS             complement(4844..5413)
                     /gene="ubiX"
                     /locus_tag="OQQ75_001597"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HCS1975969.1"
                     /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL
                     SLETDFSLREVQALADVTHDARDISASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG
                     LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD
                     DVINQTVNRVLDQFAITLPEDLFARWKGA"
     gene            complement(5508..7025)
                     /gene="purF"
                     /locus_tag="OQQ75_001598"
     CDS             complement(5508..7025)
                     /gene="purF"
                     /locus_tag="OQQ75_001598"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCS1975970.1"
                     /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR
                     LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN
                     GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT
                     NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG
                     FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR
                     VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT
                     FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY
                     LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE
                     NPDIQQFECSVFNGVYVTKDVDQDYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG"
     gene            complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="OQQ75_001599"
     CDS             complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="OQQ75_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin V production protein"
                     /protein_id="HCS1975971.1"
                     /translation="MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHY
                     YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV
                     CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP
                     RA"
     gene            complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="OQQ75_001600"
     CDS             complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="OQQ75_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416817.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DedD"
                     /protein_id="HCS1975972.1"
                     /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV
                     PKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPA
                     PVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEI
                     VGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYT
                     PN"
     gene            complement(8461..9729)
                     /gene="folC"
                     /locus_tag="OQQ75_001601"
     CDS             complement(8461..9729)
                     /gene="folC"
                     /locus_tag="OQQ75_001601"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HCS1975973.1"
                     /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSQVAARLGV
                     LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE
                     SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD
                     ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSAKPAIVGEPEMPSTIADVAQEKGA
                     LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA
                     IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH
                     DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA
                     KAEDTVLVCGSFHTVAHVMEVIDARRSGGK"
     gene            complement(9799..10713)
                     /gene="accD"
                     /locus_tag="OQQ75_001602"
     CDS             complement(9799..10713)
                     /gene="accD"
                     /locus_tag="OQQ75_001602"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HCS1975974.1"
                     /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE
                     VCPKCDHHMRMTARNRLHSLLDEGSLVEMGSELEPKDVLKFRDSKKYKDRLASAQKET
                     GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS
                     ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI
                     AEPKALIGFAGPRVIEQTVREKLPLGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK
                     LMNLPAPNPEAPREGVVVPPVPDQEPEA"
     gene            complement(10869..11528)
                     /locus_tag="OQQ75_001603"
     CDS             complement(10869..11528)
                     /locus_tag="OQQ75_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1975975.1"
                     /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV
                     VTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGDKLFS
                     NPDSKIFRCSYLDKTHQFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
                     VIGALLWVLIFTYAGYFFGMLPFIQSNLKLMIVGIIFVSILPGVFEFIRHKRAAARAA
                     K"
     gene            complement(11611..12423)
                     /gene="truA"
                     /locus_tag="OQQ75_001604"
     CDS             complement(11611..12423)
                     /gene="truA"
                     /locus_tag="OQQ75_001604"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HCS1975976.1"
                     /translation="MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS
                     QVANEPITVFCAGRTDAGVHGTGQVVHFETTAPRKDAAWTLGVNANLPDDIAVRWVKA
                     VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND
                     FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN
                     QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD"
     gene            complement(12423..13436)
                     /locus_tag="OQQ75_001605"
     CDS             complement(12423..13436)
                     /locus_tag="OQQ75_001605"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1975977.1"
                     /translation="MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAG
                     EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL
                     EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS
                     ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD
                     EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFAQGEDIVLSEE
                     NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE
                     YLY"
     gene            complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="OQQ75_001606"
     CDS             complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="OQQ75_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase PdxB"
                     /protein_id="HCS1975978.1"
                     /translation="MKILVDENMPYARDLFSRLGEVTAVPGRPIAVAQLADADALMVR
                     SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS
                     LLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS
                     LDELVQHADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL
                     TCLNEGQKLSVVLDVWEGEPELNVELLTKVDIGTPHIAGYTLEGKARGTTQVFEAYSK
                     FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG
                     EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR"
     gene            14737..15732
                     /gene="flk"
                     /locus_tag="OQQ75_001607"
     CDS             14737..15732
                     /gene="flk"
                     /locus_tag="OQQ75_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulator Flk"
                     /protein_id="HCS1975979.1"
                     /translation="MIQPISGPPPGQPPGQGDNLPSGAGNQPLSSQQRTSLESLMTKV
                     TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ
                     LGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT
                     DRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL
                     QARQTLSQQNTPTLESLQMALKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL
                     NQLYQRRVKGIDPRDMQPLLNPFPPMMDTLQNMATRPALWILLVAIILMLVWLVR"
     gene            complement(15729..16907)
                     /locus_tag="OQQ75_001608"
     CDS             complement(15729..16907)
                     /locus_tag="OQQ75_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1975980.1"
                     /translation="MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH
                     DLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA
                     ILPVSAPLKFALLVVGRLILGFGESQLLTGALTWGLGIVGAKHSGKVMSWNGMAIYGA
                     LAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGLI
                     WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF
                     GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ
                     VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG
                     "
     gene            complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="OQQ75_001609"
     CDS             complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="OQQ75_001609"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HCS1975981.1"
                     /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM
                     RSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLI
                     AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS
                     SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA
                     SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG
                     AVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS
                     LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF
                     GGTNATLVMRKLKD"
     gene            18615..20621
                     /gene="mnmC"
                     /locus_tag="OQQ75_001610"
     CDS             18615..20621
                     /gene="mnmC"
                     /locus_tag="OQQ75_001610"
                     /EC_number="1.5.-.-"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HCS1975982.1"
                     /translation="MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG
                     GNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK
                     FPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINEL
                     TSQQDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRR
                     GLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIAC
                     ALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFAR
                     RFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVA
                     TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ
                     QATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQ
                     NPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV
                     RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAP
                     LCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG"
     gene            complement(20742..21020)
                     /locus_tag="OQQ75_001611"
     CDS             complement(20742..21020)
                     /locus_tag="OQQ75_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcL family protein"
                     /protein_id="HCS1975983.1"
                     /translation="MIAEFESRILALIDGMIDHASDDELFASGYLRGHLTLAIAELES
                     GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ"
     gene            complement(21054..21602)
                     /gene="epmC"
                     /locus_tag="OQQ75_001612"
     CDS             complement(21054..21602)
                     /gene="epmC"
                     /locus_tag="OQQ75_001612"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HCS1975984.1"
                     /translation="MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPY
                     NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ
                     ALDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA
                     LQNYYHTPELTAEQFPWPEALN"
     gene            complement(21602..22411)
                     /locus_tag="OQQ75_001613"
     CDS             complement(21602..22411)
                     /locus_tag="OQQ75_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HCS1975985.1"
                     /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM
                     AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFAGSMSGALLVQ
                     YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG
                     PAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG
                     QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN"
     gene            complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="OQQ75_001614"
     CDS             complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="OQQ75_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HCS1975986.1"
                     /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC
                     IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA
                     GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI
                     FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA
                     DSLECEDQPLPPPGDGCGAELQSWFAPPKPGTTKPEKKTPPPLPPSCQALLDEHVI"
     gene            complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="OQQ75_001615"
     CDS             complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="OQQ75_001615"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HCS1975987.1"
                     /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGILLTEADLQHD
                     LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF
                     RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM
                     GDIPLEIKDWSLVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL
                     GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI
                     LGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA
                     MLAIVLMDHLLRQRAQNADVKTDIPRW"
     gene            complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="OQQ75_001616"
     CDS             complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="OQQ75_001616"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1975988.1"
                     /translation="MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDE
                     AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH
                     EFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVD
                     AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD
                     LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV
                     PFTWLEFDNGGDGVFMLTKEQLLAAREYFAIYKD"
     gene            25457..26008
                     /gene="smrB"
                     /locus_tag="OQQ75_001617"
     CDS             25457..26008
                     /gene="smrB"
                     /locus_tag="OQQ75_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HCS1975989.1"
                     /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV
                     KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG
                     LTQLQAKQELGALIAACRREHVFCACVMHGHGKYILKQQTPLWLAQHPHVMAFHQAPK
                     EYGGDAALLVLIEVEEWLPPELP"
     gene            complement(26081..26794)
                     /locus_tag="OQQ75_001618"
     CDS             complement(26081..26794)
                     /locus_tag="OQQ75_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005007603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2544 domain-containing protein"
                     /protein_id="HCS1975990.1"
                     /translation="MATPDSVNYAIFKATFMPNSQPDLVSWTGDSSTQPSMSKISDSR
                     VSMSACPGLEQYDSQTKTGWTCNELKMFVYYDGNLHGCPWIVSSFVKSRDPFAKTYDD
                     DFPDYIGPTKVSSSCPAVPLAPYDVSWNENYVVHNKVVRLQSTGGVIEQTLPTFLMEN
                     GKLCNGNNFDERGVYCRFIAQQMTFSTSGCDNAKVTVTPEPQPITSRQLHDMKLRVDT
                     TSRQPIDSTCRFTYILNMY"
BASE COUNT         6612 a         7333 c         6762 g         6108 t
ORIGIN      
        1 gcatcaagat ggttttgcat tgccgcaatg gaataacgca tcatgcgaaa agccattaat
       61 tcttccggct tactttggtg ctctatcact acataaatat aacccactcc ctcctgcgtt
      121 ttcacagacc acaagaggtc ggaataatat tgccgcaggt cttcatcaat aaaactgttt
      181 ggttccagtt taagcgtcgt taaatcacac agtttgcgca gcggcgcggg aagatgaata
      241 tcaataaaat cccgcgcggt gtctggatgg cgtaaaaaag atttaaatac cgcatcatgc
      301 ggcgtggaag ttgtcgatat tgtcatggcg ttccgtcacc cctcaaattt aagatgacgc
      361 gacaataacc acgattaaca cccaatgcag caggcagttt ttatctttgg acagcgaatt
      421 cagaagtatt tttagcggac tgcaactttt acatttcagc ggaagctgac tcgcaaattc
      481 cccatgaaaa tactccggca gcgttagcca ccggagagga aattatttca gcgatccctt
      541 aaggaactgt tgcagacgag ggctttgcgg gttgccaaat aactgctccg gcgcgccctc
      601 ttcttctatt ttcccctgat ggaggaaaat gacatgagta gaaacatggc gagcaaagcc
      661 catttcgtga gtcactacca ccatggtttt cccctcttct gccagttgct gcataatacg
      721 caacacttcg cctaccagtt caggatcgag cgccgaggta ggttcatcaa acagtaaaac
      781 ttccggttcc atcgccagcg cccgcgcgat agaaacacgc tgttgctgac cgccggaaag
      841 atgcaccgga tatttcccct gcgcacgttc gtctatcccg acttttgcca gatacttgac
      901 cgcccgctcg tgcgcttcct gcttgctcag gcccaacacc tgaatcggcg cttccatgac
      961 gttttccagc accgtcatat ggctccagag attgaagtgc tggaatacca tcgtcaggcg
     1021 tgtgcgcagt aagcgcagtt gatttttatc ggcgactttg agttgaccgt ctttgtcgcg
     1081 caccagattg atcgtctggc cattgaccac gatcgaccct tcactcggtt tttcgaggaa
     1141 gttaatgcag cgcagaaagg tacttttccc cgatcccgac gatccgatga tgcttattac
     1201 atctccggca ttcgcttgca gtgagacccc tttcagcact tcatgttcgc cgtagcgttt
     1261 gtgcaaatcg ataacgttta atttattctc ggacatcgta ttctcagtgc gttgaagaag
     1321 gtttcacatg ctgcaaccag cgtttttccg ctctgcgaaa gaggctgatc aggacataag
     1381 agatgattaa atagagcacc gcggcaatgc cgaaggcggt aaaaggttga tacgtggcgg
     1441 cgttaatatc gcgggctatt ttcagcagat ccggcacagt ggccgtaaac gccagcgcag
     1501 tagagtgcag catcaggatc acttcgttgc tgtatgccgg taacgcaata cgcagcgcag
     1561 aaggcaaaat aatgcaacga tacattttaa aagtcgagaa gccataggct ctggcggctt
     1621 caatttcccc atgcagaacc gaacggattg ccccagcaaa aatctcggta gtgtaagcgc
     1681 aggtgttaag cgtcagcgcc agcacggtac agttcaggcc actgcggaag aaagcgttaa
     1741 ggaattcggt tcccttaaca atctcaagcg tgtatatgcc ggaatagaac accagcaact
     1801 gaacatacag cggcgtaccg cgaaaaatat aggtaaataa ccagattgga aactggatgt
     1861 atttattact ggagacacga ccaatcgcca gaaacagcgc caggactccg cctatcacta
     1921 ccgacaaaat aagcagccac agagtgatcg ccacaccagt aaagcgataa ccgtcggtcc
     1981 acagcagcgg tttccagtat tcatgtaaga tttcgatcac aggtcagccc tcttcacacc
     2041 cacggagtag cggcgctcaa ggaacagcag cacaccattg gaaacagtgg tgaaaaccag
     2101 gtaaatcacg ccacagacga tggcgaaata gaacggttcc caggtacttt tgcctgccag
     2161 ttgggtggct ttgaccacat cttccaggcc gagtaacgaa accagtgcgg tagatttgag
     2221 gatcacctgc cagttgttgc caatgcctgg cagggcgtaa cgcatcatcg ccggaaacat
     2281 gatccgccga aacacttgcc cacgagtaaa accgaacgcc gtcgccgcct ctatatgtcc
     2341 tttcggcact gccataaaag caccacggaa cgtttcggta aaataagcac cgtagataaa
     2401 accgagagtg ataataccag cgaccatcgg atcgatatca atctgcccga cgcccatcgc
     2461 ctccgtcacc gtgtttagcg caatctgcaa accgaagaaa atcagcagca tcaacactaa
     2521 gtccggcacg ccacgaatca gcgtggtgta cccttcgaaa atcagccccg aaagccgatt
     2581 ttgcgagagc ttaccgccag cgccaattaa accgatgatt acagcgagca ctacagagct
     2641 gatagccagc tccagcgtga cgagcgcacc ctgtaaaata acacctgaaa acccatataa
     2701 catgctgcct gtcctgtcgt gtgtggtgaa ttaccgcctc ttgtctccct ccggttaccc
     2761 gaagggagcg ggctttcttt caccgatggc gattagccac cataaacatc aaaatcgaag
     2821 tactttttcg ctaatttctc gtaagtaccg tcagcgcgca tttcggcaaa ggctttgttc
     2881 agtgcttcgc gcagttcgtt atcttcttta cgcaggccca tgccggtccc tacgccaaac
     2941 agtttttcat ctttaacaga cgggccaccg aatttgtaat ctttaccgac aggttgtttg
     3001 aggaaacctt cgctggcagc gacctcatcc tggaacgcgg catcaatacg tccggcagtc
     3061 aggtcagaat aaatgttgtc ctgcccctga tacgagacga tttcaatgcc ttttggtgcc
     3121 caatgttcat taccgaacgt ctcctgggtg gtgccctgca atacgcctac ccgtttgcct
     3181 ttcagcgact cgactgtcgg ctgaatgtca gaatttttcg ccaccaccaa acgagaatcg
     3241 gcagcgtaca gtttgtcggt gaaggctatt tcttgctgac gtttttccgt aatggaaagc
     3301 gatgacatga tggcgtcaat cttcttcgct tttaaggacg ggattaacgc atccagcgga
     3361 ttttcgacaa acgtacattg cgtattgatg cgtttgcata attcctttgc cagatcgata
     3421 tcgaagccaa ccagttcgcc ttgtgaattt tttgattcaa atggcgcata ggtcgggtcg
     3481 gtaccgatgc ggatgttttg cggaatcgca gcaaatgccg cagttgcgct ggagaaggcc
     3541 agaaccagag agagcgatag caccagtttt ttcataatgt cctcaactga cagtcttttt
     3601 atagggaata tttacaggtt tgttacactt atcgtgccat aaaattgacc atcaaggcaa
     3661 aatatcccgc cccgttagat gtattatttt tcattaaaaa tgcttaagta tgcatttcaa
     3721 tgcaccacga tagtgcaaca aacctagcgt gcaccatgat gatcattcca tcaggtacag
     3781 cttcccagcg acgtatcagt caccgtagac attaaagtcg aaatactttt tcgccatctt
     3841 gtcgtaggtg ccgtcctgac gcagctcgcc aagcgcctta ttgaaggcag ccgtcagttc
     3901 agcatcatct ttacgtagcc ctacaccggt gccatcaccg aagtattttt tgtcttttac
     3961 tgatgagcca gcaaaggcga aatctttacc agcaggttgc ttgaggaatc cttcgctggc
     4021 agcaacttca tcttgtaacg cagcatccag acgtcctgca gccagatcgg aatagaccaa
     4081 atcctggttg gcataggcca ccacatccac gcctttgcta cgccaggtct cgttagcgta
     4141 agcttcctgg gttgatccct gcagcacacc aacatgttta cctttcagtg aatccagcgt
     4201 tggctgaatc ggtgaacctt tggcagcaat caaacgagaa tctgcggcgt acagcttgtc
     4261 ggagaaggca atctcctgct gacgtttatc ggtaatggaa agcgacgaaa taatggcgtc
     4321 gatttttttc gctttcagtg aggggatcag cgcgtcaaag tcactggcaa cccaggtaca
     4381 tttcacctgc atccgtttgc acatctcgtt accgagatcg atatcaaagc caacaaaatc
     4441 acctttagca tctttcgacg agaacggcgc ataggtggta tcggttccga tacgtaccgt
     4501 ctccggtagc gccgcatagc tggaagccgc tgcggagaga ccgactaaca aagacagagc
     4561 gagaatcgac ttcttcatac ataaccctca agtgaaaatg gcttttttat gttgtgtatt
     4621 gtgttgtgtg tttgcaggct ctttcaagca ggtcttatgc catcttgacg acaacagtaa
     4681 cattcaacgt taaatatgtt aataagacgt tgcattattg tcctgaagtt gaagatagca
     4741 ggtatagcgg ttgaatcgca gcgtttcgat tgaatggcag aaacaaaatg tcgaggattt
     4801 gatcgcggtt gcaaaattgc cctgaaacag ggcaacagcg gagttatgcg cccttccagc
     4861 gggcaaagag atcttcagga agggttattg caaactggtc aagaacacga ttaaccgtct
     4921 gatttatcac atcatcaagg gattgcgggc gatgataaaa cgccggaaca ggaggcataa
     4981 tcaccgcacc gatttctgcc gcctgagtca ttaaacgcag atggcctaag tgcaatggtg
     5041 tttcacgcac gcagagcacc aacgggcgac gctctttcag caccacatct gccgcacggg
     5101 tcagtaagcc atcagtatag ctatggacaa tgccggaaag ggttttgatt gaacagggta
     5161 aaatcaccat ccccagcgtc tggaaagaac cggaagagat gctggcggaa atatcgcgcg
     5221 catcgtgcgt gacatcagct aatgcctgca cttcgcgcag ggaaaaatcc gtttcgaggg
     5281 ataaggtctg gcgcgccgcc tggctcatca ccagatgcgt ttcgatatct gtgacatcgc
     5341 gcagaacctg taataagcgc acgccataaa tcgcgccgct ggcaccgctg atgcctacaa
     5401 tgagtcgttt cataaatagt tgccctgtca gacttgcagg cagactttgc agtatttcgg
     5461 cgggagttgc aagtcagggt gccagaccgg caccctcagc gaaggcatca tccttcgtta
     5521 tgcatttcga gattttccac ttcgttctga cgttgcactg ctttggcgtc atcattacgt
     5581 aacgtatcga ggaaatcgag gtagtcctga tcaacatctt tggtgacgta gacgccgttg
     5641 aacaccgagc attcaaactg ctggatatcc ggattttcag cgcgaacggc gtcgatcaga
     5701 tcgttcagat cctggaaaat caacccgtca gcaccgatga tctggcgaat ttcatcaact
     5761 tcgcgaccgt gagcgatcag ttccgtggcg ctcggcatat caataccata aacgttcggg
     5821 aagcgaattt ccggggccgc agaagcgagg tacactttct tcgctccggc ttcgcgtgcc
     5881 atctcgataa tctgctcaga agtggtgcca cggacgatgg agtcgtcgac cagcaggacg
     5941 tttttatcgc ggaactcggc gcggttggcg ttcagtttac ggcgcacgga cttacgacgc
     6001 agctgctggc ccggcatgat gaaggtgcgg ccaacatagc ggtttttaac gaagccctgg
     6061 cggtacggct tgcccagaat acgagcaatt tccagcgcga tatcacacga ggtttccggg
     6121 atcgggatca ccacgtcgat atccagatct tcccattcgc gggcaatttt ctcacccagt
     6181 ttcgtgccca tattcacacg cgcgctgtaa acggaaattt tgtcgataaa cgagtccggg
     6241 cgggcaaagt atacatactc aaacaggcac ggattgctga ccggattgtc agcacattga
     6301 cgggtaaaca actgcccttc ttcagtgatg taaatcgctt cgcccggcgc gacgtcacgc
     6361 aggaaatcaa agcccagcgt atcgagcgct acgctttcgg aagcgaccat atattctgta
     6421 cggttctcgt caatatcacg ttttcccagt accagcggac gaatcccgtt tggatcgcgg
     6481 aaagcaacca taccgtggcc gataatcatc gccacacagg catatgcgcc gcggattaag
     6541 cggtttgtgg cagcaatggc agcgaaaata ttgtcggctt ccagcgggta gtggcggaag
     6601 ttgtccagct cgctagcgaa gatattaagc agaatttccg agtcggaagt ggtgttgatg
     6661 tggcggcgtt tttcttcaaa cagtttttta cgcaactcgt gagcgttggt cagattgccg
     6721 ttgtgggcaa gcgtaatgcc atacggggag ttaacgtaaa acggctgcgc ttcagaggcg
     6781 ctggagctgc cagccgtagg gtaacgcaca tgaccaatgc ccatattgcc ctgcaaacgc
     6841 tgcatatggc gagcttcaaa tacatcgctc accagcccgt tcgctttacg caaacggaag
     6901 cagttattgg catctatggt gatgatgccg gcggcatcct gaccgcgatg ctgaagcacc
     6961 gttaaggcat cataaatcga ctggttaacc ggcataacac cggcgatacc gacaataccg
     7021 cacatacgtc tttttcctcg ttaagccaca tctcagagca cttacgctct gggcaagaaa
     7081 cttgacgagc tttgcagata atcaaaaaac catctgatga taaaactgaa ctgcgggatc
     7141 agctgtgatt tgctccagtc ttcgcttttc gacaccccgg taaaggagtc gagaaagaag
     7201 agaatggcgg caacaatcaa cacaccgcgc aacgcaccga aacagacgcc cagcacccga
     7261 tcggtgcctg acaaccccgt tttctccacc aactggccta tcacgaagtt cacgatagca
     7321 ccaacgatca gggtagcgat aaacagtacc gcgatggcaa ttccatttcg aaccagttcg
     7381 tcttcaaagc ccgtaaacca gactgacagg taagtgtagt aatgactggc aacaaagaaa
     7441 gcacaacccc atgtcaccag cgataacgct tcacgaacaa agccgcggat caggctaacc
     7501 agagaggaaa aagcaatcac cgcgattatg gcgtaatcaa tccagaccat atgtgtccca
     7561 cgattttacg ccctgtcatc ctgttcgggg cgcattctaa cagaaaaaga aaacgtttgc
     7621 gtagggattt ccttcccacg catcaataaa aatggcgctg aaaaaatatt caacgccatc
     7681 gactttttat gcctttgcgg catcgtgcaa tgcgtgtcgg atgcggcgta aacgccttat
     7741 ccgacctacg gttctaacac tgcccaagcc tgataagacg cgccagcgtc gcatcaggca
     7801 agactgtatt aattcggcgt atagcccatt accacgccac ttaagccaga aagttgcttc
     7861 aactcaccca gcgaaccttt cagcttatct ttcgaggcat ccggcccaac cagaatacgg
     7921 gtaattttac cctgcactgg cgtggatggc gacgtataaa cccgataacc ggcaccgcgc
     7981 agcttaccga caatctcatt cactttatcg gcatttttca gcgcacccag ttgcacaaca
     8041 taggctttac ccgttggcgc tgctttttct tccacgaccg gcttcggttc tggcttcggc
     8101 gcaggtggtg cttcaacctt cggtttaggc ggctccaccg gtttcggctt cggtggggcg
     8161 accggtgcag gttccggttc aaactcggtg ttattggctg caatagtggc cggatcgagc
     8221 gacggtgctg cggcatcacc tgcccgcacc tcttccgctg cgccttccgg cggctgcgtc
     8281 ggcaacgcct gggtggcggc tggcatcata tcaggctcat cgcgatcgcc cgcttttgga
     8341 accagcggga tagccgcaaa ctcatcctga taatgttttt tctgcccgtc cagcagccct
     8401 ggaagtacaa tcacccccag cgccaccagc acgatcgtgc ccactaaccg attctgaaac
     8461 ttacttgcca ccgcttctcc tcgcgtcaat cacttccatg acatgtgcga ccgtgtggaa
     8521 agaaccacac accagcacgg tgtcttccgc tttagcgtcc gccattgcgg catcccatgc
     8581 ctgcgcaacg ctatcaaatg atttgccgtt acccaaatgc tcaagcagtt gttctgccgt
     8641 ggcaccgcgc ggcccttcca gtggcgcaca ataccagtca tcaaccacgc ttttcaacca
     8701 ggccagagtt ccggcaatat ctttatcatg tagcataccg ataaccgcca gcacgcgccc
     8761 gtttttcggt agcgctttca tacgcccggt gagatattcc gccgcatgtg gattatgcgc
     8821 gacatcaaaa ataacgcgtg gcgactcgct cacaatctgg aaacgtcccg gcaaaattgc
     8881 gctggcaatc ccgtcgcgaa tggcattttc actgacttcc agcccgctgg cacgcagtgc
     8941 cgccagcgct gttgcggcat tcggttgcgg gacaagcggc aacggcagat tttccagcgt
     9001 gccgtgagca tcgctaaacg cccagtcatg atcggtgacg gaatagttcc actcaacgcc
     9061 ccgacgttgt aacagtgcac ctttttcctg cgccacatca gcaatggtag aaggcatttc
     9121 cggctcaccg acaattgccg gttttgcgct gcgaaagatg cctgctttct cgcgaccaat
     9181 actttcgcga tctggcccca gccagtcggt atgatccagc gcaatactgg ttactaccgc
     9241 gacatcggca tcgacaatat tggttgcgtc cagacgaccg cccagcccta cttccagaat
     9301 caccacgtca agttgtgcct gtttgaacag ccacaacgcc gacagcgtac cgtactcgaa
     9361 ataggtcagg gaaatatcac cgcgtgccga ttcaatctcc gcaaaagagg cggtgtgggc
     9421 cgattccggc aattcctgac cctgcacacg tacgcgctcg gtataacgca ccagatgcgg
     9481 cgaactgtag acgcccactt tgtaccctgc cgccatcaga atcgactcca gcgtacggca
     9541 ggtggtgcct ttgccattcg tacccgcaac ggtaaacaca aatggcgctg gtttcagaac
     9601 gccaagacga gccgcgacct ggctcacgcg ctcaaggccg agatcgatag ttttactgtg
     9661 caggttttcc agataagaaa gccacgaagc cagaggcgac gcggcttgag gagtgcgttt
     9721 gataatcatg gtatccgctg attcgttacg gtgagaatag caaaagggca gagccagtgg
     9781 ccctgccctt atcagttatc aggcctcagg ttcctgatcc ggtaccgggg gtaccactac
     9841 gccttcacgc ggcgcttcag gattcggcgc tggcagattc atcaacttcg ccagaatgct
     9901 cgccagtttc aggcgcattt ccggacgacg gacgatcatg tcgatcgcgc ctttctcgat
     9961 caggaattca ctgcgctgga atcctagcgg cagtttttcg cgaacggtct gttcgataac
    10021 acgcggaccg gcaaagccaa ttaacgcttt cggttcagcg atgttgagat cgcccagcat
    10081 ggcgaaactt gcagaaacac cgcccatcgt cgggtcggtc agcacggaga tgtacggcaa
    10141 gccgcgctcc tgcatttttg ccagtgccgc agaggttttc gccatctgca tcagcgacat
    10201 cagtgcttcc tgcatacgtg cgccaccaga ggcggagaag cagatcagcg ggcagttatc
    10261 ttccagcgcc tgctcaacgg cacgcacgaa acgtgcaccc acaacagacc ccattgaacc
    10321 gcccataaag gcgaactcga atgccgcagc gacaaccggc attccataca gagtgccttt
    10381 catcaccacc agcgcatctt tttcgccggt ttctttctgc gcagaagcca gacggtcttt
    10441 atacttcttg gagtcacgaa acttcagcac atctttcggc tcaagctcgc tacccatctc
    10501 cacaaggctt ccttcatcta acaggctatg caggcgatta cgcgctgtca tacgcatgtg
    10561 atggtcacac ttcggacaga cctcaagatt acgttccagc tcagcgcggt ataaaacctg
    10621 accgcagcta tcacacttag tccacacccc ttcaggaatg ctcgccttgc gggtgggagt
    10681 aatgttgctt ttaattcgtt caatccagct cattagggac ctttctgtct gaacctggtt
    10741 cgatgccagt tttatctttg gggacgcata atgccatttt tgcccccaac agaccatgaa
    10801 tgttgcacat taaaacataa cagcccgaaa ctttggataa aaaagtggtc gaaccgcgga
    10861 gttacttttt attttgcggc gcgtgccgca gcgcgtttgt gacgaataaa ttcgaaaacc
    10921 ccaggcaata ttgaaacaaa aataatgcca acaatcatca gcttaaggtt gctctgaatg
    10981 aaggggagca tgccgaagaa ataacccgcg taggtaaaaa tcagtaccca caacagtgcg
    11041 ccgatcacgt tataagcggc gaaatgacgg tacgacatgt ggcccattcc cgcaacaaac
    11101 ggcgcgaacg ttctgacgat cggtacaaaa cgggcgagaa taatcgtttt gccgccatgt
    11161 ctctcgtaaa actgatgagt cttatcaaga taactgcaac gaaagatttt cgaatccggg
    11221 ttactgaaca gtttgtcacc aaataaccgt ccaatggtat agttcactgc atcaccgaca
    11281 atagcggcaa tcaacataag caccaccatc atatggacat tgagatcgtt agtttccagc
    11341 gacgccaatg caccagcaac aaacagcagc gaatcaccag gcaggaatgg cgttaccacc
    11401 agccccgttt cgcagaacag aatcaaaaac agaatggcat aaacccagac gccgtactcc
    11461 gcgaccagct ctgccagatg cacgtcaatg tgcaggataa aatcgatgag gaaataaatc
    11521 aggtccatat ttgcctatgc cttgtactcg tcatctttca ggctgtaact acgttggcta
    11581 cagcctgaaa tgttccgagc attattctcg ttagtccgcc agaaatagcg ggcccattgg
    11641 cggttttgga agatcatacc ggtcagggta atccaccgcg accagataca gcccttccgc
    11701 ttttgccgtt gctgccgcca gcgttctgtc ctttgccgcc agcaactctg ctatccagct
    11761 ctccggctgg ttgtgggcac cgacttccat caggctgccg acaatattcc tgaccatatg
    11821 atgtacaaag gcattcgctt tgatatctac caccacataa ggaccgtgac gcgtgacatt
    11881 aatatgcata acgttgcgcc acggggttcg ggactggcac tgcaccgcac ggaacgaggt
    11941 gaaatcattc tcgcccagca agcattgcgc agcccgatgc atccgttcag cgtccagcgg
    12001 ttcgtaaaaa tgggttaccc ctttactcag taccgccggg cgcagccgat gattgtagat
    12061 gatgtagcga taacggcgag ccgtggcgct aaatcgggca tgaaaatcat caggtacagc
    12121 tttaacccaa cgcacggcga tgtcatcagg taaattcgca tttacgccca aggtccacgc
    12181 cgcgtctttg cgcggcgcgg ttgtttcgaa atgcaccacc tgcccggtac cgtgtacccc
    12241 tgcgtcagta cgcccggcgc agaagacggt gatgggttcg ttcgccacct gggagagcgc
    12301 cttttccagc ttctcctgca cactgcggac ttcattctgc cgttgccagc cgtaatactt
    12361 actgccgtcg tactcaatgc ccagcgcaat tttataaact ggcagttgtt gctggtcgga
    12421 cattagtaca gatactcctg caccagtttc tcggcgattt ttactgccat cagcgcgccg
    12481 ccaaagcgaa cgttatcggc caccgaccag aactggactt gctccggcat accgtagtca
    12541 ttacgcacgc agccaacaga aagatgcgga gtacccgaag catcccctac ctgagtcggg
    12601 aattcgttct cttcagagag cacaatatct tcgccctgag caaacgcatc acgcgcttct
    12661 tctgccgcca gcggacgcag tgcttcaaag ttgaccatct gggcatgacc gtagaatacc
    12721 ggtgcctgga cgacgcttgc cgaaatcatc agcccttcgt cctgcaggat tttgcgtact
    12781 tcgtcaacga tacgacgttc ttcacgcacg ctaccttcgc tatccggcaa caacggcagc
    12841 atattgaacg ccagttgacg accgaagaaa tcttcttcgt caatcggaat gccgttgagc
    12901 aatttcgcac tctgccccgc taacgcatcg accgcttttt tgccctgggc ggaggctgaa
    12961 atcaggctgg taacactgat acgcgacaaa ccgccctgat cgattaacgg tttcagtgcc
    13021 gccagcagct ggctggtcag actgtctggt acggcgatga cattccggtt gcggtaatcg
    13081 gtcagtacaa acgggtttac ttccggcacc accagcggta cgtcgggttc gagagcaaac
    13141 agtccgctgc tgtcgatcac caggcaacct gagttggtcg cttcttcaac ccaggcagcg
    13201 gtagcttctt tgcctgcgac aaaaaatgcc agctgcgcct gcgtccagtc gaattcagcg
    13261 gcatcctgca cggtgattgt tttaccacca aagcgcagtt gttcgcctgc gctttcgtta
    13321 cgtgccagtg cataaatttc cccaaccggg aactgacgtt cagccagcgt ttcaagcagg
    13381 gcttcgccca cagcgccagt tgcgcccagg acggcaatgt tccagccttc agacatggtg
    13441 gtttactcca gaaatagcaa agctccctgc caatgttaca gcagagagca tgaagaagag
    13501 attaacgtgc cggatgatga acggcgttaa aacccagttt acacagcaat gatgccgcac
    13561 tggcgtcatc acaaattaca tacagagatg accattcacg gcgctcaaga tagtttttgc
    13621 gcagtttatc gaactcaccc ggtatcccgg cgactttacg cagcggtgcg tcatcgcggc
    13681 gcacatcata caccaaatgc accagccttt tcagcgtcgg ttgatcgagc gggccatgca
    13741 gcgtaatgcg accaaactct ggcgcgggca gtaatgtatc cagcgcaacg tgctgttcat
    13801 gcccaataaa cttgctataa gcttcaaaca cttgcgtagt accgcgtgct ttaccttcca
    13861 gggtataacc tgcgatatgc ggcgtgccga tatccacttt tgtcagcaac tccacgttaa
    13921 gttccggttc gccttcccag acatccagca ctacgcttaa cttctggcct tcattcaggc
    13981 aggtcagcaa cgcagtatta tcgacgactg cgccacggca ggcgttaatc agaatcgctc
    14041 ccggcttcag gctacggatc agtttttcat ccgccagatg cagcgttttg tacggcccat
    14101 ctttgaagag tggcgtatgg aaagtcagaa tatccgcatg ctgaactaat tcatccagcg
    14161 agcggaaatc accctcatcc ccacggtcag cgcgaggcgg atcgcaaagc aatgttttaa
    14221 tccctaacgc ttccagtcgc gcctgcaatc gacgtccaac gttaccaacg cccacgatcc
    14281 ccaccgtacg gtcgtgcagt gaaaatccat cgcgttcggc aagcatcagt agtgaggaga
    14341 aaacatattc caccaccgca atcgcattac agccaggtgc agcggaaaaa ccaattcccg
    14401 cctgcttcaa ccatgcttca tcgacatggt cggtccccgc agtggcagtg ccaacaaatt
    14461 taatgggttt tcctgccagc aaagattcat tcactttcgt gaccgaacgc accatcagcg
    14521 catccgcgtc tgccagttga gcgacggcga ttggacgccc gggaaccgcg gtcacctcac
    14581 ccaaacggct aaataagtcg cgggcataag gcatattttc atcaacaagg attttcacgt
    14641 ttgtgttacc tgtatgagac gagagttaac cggacaagtg tgccataatc tcgcggccag
    14701 gcatacttgc gaagatttca ggtataagga tacgtaatga tacaacctat ttccggccct
    14761 cctcctgggc aaccaccagg tcagggagat aacctgccgt ctggcgcggg caatcagcct
    14821 ttatccagtc agcaacgtac ttcgctggaa agcttaatga cgaaagtgac ctcactgacg
    14881 caacagcaaa gagcagaact gtgggcgggt atcaggcacg atattggtct gtcgggagat
    14941 tcaccgctgc tttcgcgtca cttccctgcc gctgagcata atctggcgca acgtctgctg
    15001 gccgcgcaaa aaagccattc tgcccgccag cttttagcgc aattagggga gtatttacgt
    15061 ctggggaata atcgtcaggc ggtcacggat tatatccgtc ataactttgg tcagacgccg
    15121 ctgaatcagc tctcaccgga gcaattaaaa accattctca ccctgttgca ggaagggaag
    15181 atggttattc cgcaaccgca gcagcgcgag gcgaccgacc gtcctttatt accggcggag
    15241 cacaatgcgc taaaacagct ggtgaccaaa cttgcggcgg caacggggga acccagcaaa
    15301 cagatctggc aatcgatgct ggaactttcc ggggtgaaag atggcgagtt aattccagcg
    15361 aaactgttta accatctggt gacctggcta caggcgcgtc agacgctaag ccagcaaaat
    15421 acgccgacgc tggaatcact acagatggcg ctaaaacaac ctttagatgc cagtgaactg
    15481 gcggcgttat cggcatatat ccagcaaaaa tatggccttt ctgcgcaatc atcgctttct
    15541 tctgcccagg ccgaggatat tcttaatcag ctttatcaac ggcgggttaa agggattgat
    15601 ccgcgtgata tgcaaccgct gcttaatcct tttccaccga tgatggacac gttgcaaaat
    15661 atggcaacgc gtcccgcgct gtggatactg ttagtcgcga ttatcctgat gctggtctgg
    15721 ctggttcgtt aaccccgacg aaatgacagt atcgtgacaa taatacccag caccgcagag
    15781 atcgccccgg caagaaatac cgaagagtaa ccaaacgtgg tcgccagcat tcccgccagc
    15841 ggcccggaga cgccgagggc gatatcctga aacgcggcgt aaccgcccag tgcggtgccg
    15901 cgaacttgtg aggggacgcg tttaaccacc tccacgccca gcgcaggaaa gataagcgaa
    15961 catccggctc cggttaacgc cgcgcccgct aatgcgaccc atgcacctgg ggcttgccag
    16021 agcagcaaca agcccaccgt ttctacaagc agagagacaa tcgccacttt cacgccgcca
    16081 aaacggtccg gcatccagcc aaacatgacg cgcatcacga caaatgcgcc gccaaacgcg
    16141 gtaagagtaa agcccgccat cgcccatcct ttgctggcaa agtagagcga aacgaaagtc
    16201 ccgataaccg caaaaccaac gccttgtagt gccagcccta accctggttt ccagataagc
    16261 ccgacaacgc tccacagcga tggacgttct cccgccaggg ccggtacttt gcgcactgtg
    16321 ccgttacagg cccacgccag taagggtaat accattgtgg tgatcgccag tgcggcaaaa
    16381 ccgtaatggc tatgaatcaa caggccaagc ggcgcaccaa cagcgagggc accgtaaatc
    16441 gccattccgt tccatgacat cactttgcca gagtgttttg cccctacgat gcctaatccc
    16501 caggtcagag cgcctgtcag taactggctt tcaccaaagc caagaatcaa acgcccgacg
    16561 accaacaggg caaatttcaa cggtgcggag acaggcaaaa tcgccgccag cagcaacgcg
    16621 ccgccagcca gaccacaagc taacatcccc tgaagcgccg aacgttttgc accatattga
    16681 tcggccagtc gcccggcata gccacgcgtc agcaccgtag ccagaaactg aatcccgacg
    16741 gcaatcccga ccatggtatt gccatagccc agatcatgat gaacaaacag cgggataacc
    16801 ggcaacggca gccctacggt catgtaggtg agaaaaaccg caaaagcgat gcggaagagc
    16861 gaaaaattgg cagaagatcg tgtttcggtt tggcttacag cagtcatgca ttactccaga
    16921 atgcagcgca aggcgaggag tatccccgtc tcatctctct ggtttcaggg ttacagtgcg
    16981 ttggcaggat ttaacgcgta cgtcttttca gaaggaaatc gacaaagcgg gaagtttgcc
    17041 tggaactggc ggcgattgtc aatgatgtga aaaagggaac catcaggttc ccttttgcgt
    17101 tagtgccgga ggccgcattg gcgcgtaacg tcggatgcga cgctggcgcg tcttatccga
    17161 cctactccga ctactccgac tactccgact actccgacta ctccgactac tccgactact
    17221 ccgacctact gcgaattaat ctttcagctt gcgcattacc agcgtggcgt tggtgccgcc
    17281 gaagccgaag ctgttagaca taacggtggt cagttcgcga tcggtcgttt cggtcacgat
    17341 gttcagacct gccgcctgct cgtccagctc ttcaatgttg atgctcgggg cgataaagcc
    17401 gtgttccagc atcagcagag agtagatagc ttcctgtacg ccagcagcgc ccagagagtg
    17461 accggtcatg gctttggttg cagaaatcgc cgggctctta tcgccgaaca cttcacggat
    17521 agctgccagt tctttcacgt cgccaaccgg agtcgaagta ccatgagagt tcaggtaatc
    17581 gattggggta tcaacgccgt gcatcgccat cttcatgcag cgtactgcgc cttcgccaga
    17641 cggagcaacc atgtctgcac catcagaggt tgcgccgtag ccaacgattt cagcatagat
    17701 gtgagcacca cgcgccagcg cgtgttccag ctcttcaacc actaccatac cgccgccgcc
    17761 agcgataacg aaaccgtcac ggtgagcgtc gtaagtacgg gaggcttttt ccggggtgtc
    17821 gttgtattta gtagacagcg cacccatcgc gtcgaattcg caggccattt cccagcacag
    17881 ctcttcgccg ccgccagcaa acacgatgtc ctgtttgccc agttggatct gctctactgc
    17941 gttaccgata cagtgtgcgg aagtcgcaca cgcggagctg atggagtagt taacgccatg
    18001 aattttaaac ggcgtggcga ggcaggcaga aacgccggat gccatcgctt tggtgaccac
    18061 atacgggcca accgctttca ggccgcgcgg gccgcgcatt gcgtcagcgc cgaatacctg
    18121 gaaacgcggg gaaccgccgc cagaacctgc aatcaggcca acgcgcgggt tattctggta
    18181 agcttccgga gaaaggcccg catctgcgat tgcctgctcc atagaaagga atgcataaat
    18241 ggatgcgtcg ctcataaagc gcacaacttt gcggtcaatg aggccagtgg tatccagttt
    18301 tacgttgccc cagacgtggc tacgcatgcc ggaatcctta agctcctgag agaaagtgat
    18361 ccctgaacgt ccttcacgca gagatgccag gacttcctgc tggttattac cgatgctgga
    18421 aacaatgccc aggccagtaa tcactgcacg tttcattcaa tacctctgta agtcgcacat
    18481 agagtaagtt tcgaatgcac aatagcgtac acttgtacgc cgaacaagtc cgatcagcca
    18541 tttaatagag aaatttgcgc agccttacac acatcgctaa gatcgagcca ccgcctgtaa
    18601 gacgagtaac ttacgtgaaa cactactcca tacaacctgc caacctcgaa tttaatgctg
    18661 agggtacacc tgtttcccga gattttgacg atgtctattt ttccaacgat aacgggctgg
    18721 aagagacgcg ttatgttttt ctgggaggca accaattaga ggtacgcttt cctgagcatc
    18781 cacatcctct gtttgtggta gcagagagcg gcttcggcac cggattaaac ttcctgacgc
    18841 tatggcaggc atttgatcag tttcgcgaag cgcatccgca agcgcaatta caacgcttac
    18901 atttcattag ttttgagaaa tttcccctca cccgtgcgga tttagcctta gcgcatcaac
    18961 actggccgga actggctccg tgggcagaac aacttcaggc gcagtggcca atgcccttgc
    19021 ccggttgcca tcgtttattg ctcgatgaag gccgcgtgac gctggattta tggtttggcg
    19081 atattaacga actgaccagc caacaggacg attcgctaaa tcaaaaagta gatgcctggt
    19141 ttctggacgg ctttgcgcca gcgaaaaacc cggatatgtg gacgcaaaat ctgtttaacg
    19201 ccatggcaag gttggcgcgt ccgggcggca cgctggcgac atttacgtct gccggttttg
    19261 tccgccgcgg tttgcaggac gccggattca cgatgcaaaa acgtaagggc tttgggcgca
    19321 aacgggaaat gctttgcggg gtgatggaac agacattacc gctcccctgc tccgcgccgt
    19381 ggtttaaccg cacgggcagc agcaaacggg aagcggcgat tatcggcggt ggtattgcct
    19441 gcgcgttgtt gtcgctggcg ctattacggc gcggctggca ggtaacgctt tattgcgcgg
    19501 atgaggcccc cgcactgggt gcttccggca atcgccaggg ggcgctgtat ccgttattaa
    19561 gcaaacacga tgaggcgcta aaccgctttt tctctaatgc gtttactttt gctcgtcggt
    19621 tttacgacca attacccgtt aaatttgatc atgactggtg cggcgtcacg cagttaggct
    19681 gggatgagaa aagccagcat aaaatcgcac agatgttgtc aatggattta cccgcagaac
    19741 tggctgtagc cgttgaggca aatgcggttg aacaaattac gggcgttgcg acaaattgca
    19801 gcggcattac ttatccgcaa ggtggttggc tgtgcccagc agaactgacc cgtaatgtgc
    19861 tggaactggc gcaacagcag ggtttgcaga tttattatca atatcagtta cagaatttat
    19921 cccgtaagga tgactgttgg ttgttgaatt ttgcaggaga tcagcaagca acacacagcg
    19981 tagtggtact ggcgaacggg catcaaatca gccgattcag ccaaacgtcg actctcccgg
    20041 tgtattcggt tgccgggcag gtcagccata ttccgacaac gccggaattg gcagagctga
    20101 agcaggtgct gtgctatgac ggttatctca cgccacaaaa tccggcgaat caacatcatt
    20161 gtattggtgc cagttatcat cgcggcagcg aagatacggc gtacagtgag gacgatcagc
    20221 agcagaatcg ccagcggttg attgattgtt tcccgcaggc acagtgggca aaagaggttg
    20281 atgtcagtga taaagaggcg cgctgcggtg tgcgttgtgc cacccgcgat catctgccaa
    20341 tggtaggcaa tgttcccgat tatgaggcaa cactcgtgga atatgcgtcg ttggcggagc
    20401 agaaagatga ggcggtaagc gcgccggttt ttgacgatct ctttatgttt gcggctttag
    20461 gttctcgcgg tttgtgttct gccccgctgt gtgccgagat tctggcggcg cagatgagcg
    20521 acgaaccgat tccgatggat gccagtacgc tggcggcgtt aaacccgaat cggttatggg
    20581 tgcggaaatt gttgaagggt aaagcggtta aggcggggta atctgctctc gcagtgtttg
    20641 ccggatgcgg cgtgaacgcc ttatccgacc tacgtgtgac gtgtaggcct gataagacgc
    20701 gataagcgtc gcatcaggca tggtgctcca gacgccgcaa cttactgctg tgacgcctgc
    20761 tgaaacaggt tttcccacat atcggtcacc agcgcctggt cacgcggcga caattcaccg
    20821 gcaccaatgg ctttttccag actctggcta acggtcgtat gcaccgcctg agcggagtgg
    20881 tcatcaccac tttccagttc tgcgatggct aatgtcaggt ggccacgcaa atacccactg
    20941 gcaaacaact catcatcact ggcatggtca atcatgccgt cgattaatgc cagaatgcgt
    21001 gattcaaact ccgcgatcat cttctttcct cattgtaaaa cgtggcaccg gcttcagttg
    21061 agcgcttccg gccacgggaa ctgttccgcc gtaagttccg gcgtgtgata ataattttgt
    21121 agtgctttaa tgaagcgtgc cggacgctcg ggaatgccat ttgtcagata atccatcacc
    21181 tgcgcatgta cccgccgttg aaacaccaca cgatccggtt cgaagtcgcc ttccagattg
    21241 tcgcaactga cgttaaacgg atatcccgcc gccacacaga acaaccagtc gagtgcctgc
    21301 ggcttcactt caacatcttc aaactggctt tgcgtttggg catcacgccc atccgggcaa
    21361 taccagtagc cgaaatcaac cagctcacgg cgcgcttttc cggcaataca ccagtgcgaa
    21421 atctcatgaa ttgcgctggc ataaaagccg tgggcaaaga caattcggtt atacggtact
    21481 tccgcatcag caggaagata gatcggttcg tcgtcgcctt taatcagacg ggtattaaat
    21541 tcatcggcaa agcagctatt aaaaatttca atcaactgct catagtggtg tgtactgttc
    21601 attagttcat ccccaaccag tggaggatct cctgtccgtg gctatcgtaa agtaatttgg
    21661 cactcatcac cgccgagacg ataacgatca tcgggcggat cagtttttgt cctttgctca
    21721 gcaccagtct tgaacccatg cgcgcgccga ggaactgccc caccagcatg acaaagcccg
    21781 tcgcccaaat cactttgccg ccgagaataa acagcagcag accgccaatg tttgacgttg
    21841 cgttgagtaa tttggcgtga gccgtggctt tggcgaggtt gaatccgcac agcgtaacga
    21901 aggccagcgc gtaaaacgat ccggcagccg ggccaaagaa tccgtcataa aaaccgacgc
    21961 agccaccggc aattaacgcg aagggtaaac cgtacatccg gcgctggcga tcttcttcac
    22021 ccagctttgg catcagcaag aaatagaggc cgatacaaat taccagaatg ggcaaaatct
    22081 gccgtaagac atcagcctga acgtattgca ccagcagtgc gccgctcatt gagccggcaa
    22141 aggtcatggc gatattgagt ttctgatcgc ttaaactaac cactttgcgg cgaataaagt
    22201 agatagtggc ggaaatagag ccgccgcagg cttgcagttt attggttgcc agcgcgttag
    22261 cgggagacat tcccgcagcc atcaatgccg gaatggtgag taacccaccg ccaccggcaa
    22321 tcgagtcgat aaatcccgcc agcatggcga caaaaaagag aactcccagc aacagcgggg
    22381 aaaccataaa caggctatta aacgtttcca ttagatcacg tgctcatcca gtagcgcctg
    22441 gcaggaaggc ggcaacggag gcggtgtctt cttctcaggc tttgttgttc ctggttttgg
    22501 aggtgcaaac cagctttgca gttctgcccc gcaaccatcg cctggtggcg gtaaaggttg
    22561 atcttcacac tccagactat cggcagggca acgtaatcgt acatgcatat gcgcgcgatg
    22621 ctggaaccag ggtcgcactt tgcgcaacca gtcgcgatcg gtgcccgcat caaggcaaag
    22681 ttgttgttta atcgccggat taacaaaaat gcgcgtgacg tctttgtcct gggcggcgag
    22741 tttgatcaag ctgaaaattt ctggcttcca cagcgtggag acaacgtgtt taccgtcgcg
    22801 ggaaactaag tccagtgctt gcgggcgcaa gagctgcgcg gaggtccagc gagttttcgg
    22861 cagttgcaga aagatatcga catccagtcc ggtctggtgg ctggcatgac cgccgttgaa
    22921 acgcccacca gcgggcatcc ccatatcgcc aatcagcacc gtacccatgc ccagattgct
    22981 cacctggcta ctcagacgct ggataaacat caccagatcc gggtgaccga aatagcgacg
    23041 ctgatcggta cgcatgacct gataatgttc ggactgtatc ggcaacgtgt cagcgccgac
    23101 aatacagcca ttagaaaaac tgcctatcga ttgtgcgcta cccggcacag gttgggttat
    23161 tttttgccac ggcgtcgctg ccaagctagc gctactggca agcagagcca gcagcgcaat
    23221 cgcggttttg ttcatttttt accagcgtgg aatatcagtc ttcacatcgg cattttgcgc
    23281 ccgctgccgt aacaggtgat ccattaaaac gatcgccagc atcgcttcag cgatcggcac
    23341 tgcacggatc ccgacacagg gatcgtgacg acctttggtg atcatctcaa cttcttcgcc
    23401 aaagcggtta atagtgcgcc ccggcacggt aatgctggag gtcggtttca gcgccatatg
    23461 agcaatgatt tgctgcccgc tgctgatacc gccgagaatg ccgcccgcat ggttgctctg
    23521 gaaaccgtct ttggtgattt cgtcgcggtt ctggctgccg cgcagcgcca ctacgtcaaa
    23581 gccgtcgcca atttccacgc ctttcaccgc gttgatgctc atcagcgcat gggcgatgtc
    23641 ggcatccagg cggtcaaata ccggctcgcc aagtccggcg gggacgccac tggcaacaac
    23701 ggtgactttc gcgccgatgg agtcgccctc ttttttcagc gcgcgcatca gttcatctaa
    23761 cgcgtcgatt ttgtccggat ccgggcagaa gaacggattt tgttcaacca gcgaccagtc
    23821 tttgatttcc agcggaatgt cgcccatctg ggtcaagcag ccgcggattt caataccaaa
    23881 tttctcggcg agatattttt tggcaatcgc ccctgccgcc acgcgcatgg cggtttcgcg
    23941 ggcggaagaa cgtccaccgc cgcgataatc gcgcagaccg tatttttgtt cgtaggtgta
    24001 atcagcatgg cctgggcgga aaacgtcttt aattgcgctg taatcctgag agcgctggtc
    24061 agtgttttcg atcaacaagc caatgctggt gccagtagta acgccttcaa aaacaccaga
    24121 gagaattttg acctgatccg gctcgcggcg ctgggtggta tagcgcgatg tcccagggcg
    24181 acgacggtcg aggtcatgtt gcaggtccgc ttccgtcagc agaatgcctg gcggaacacc
    24241 atcgacgatg cagccgagcg ccagcccatg cgattcgccg aaggtggtta cgcgaaagag
    24301 ttgtccaatt gtgtttccag ccatcacggc tccgttattg ttgtgtttgc gtgtttactt
    24361 aatctttata aatcgcgaaa tattcacggg ccgccagcag ctgctctttg gtgagcataa
    24421 acacaccatc gccgccgtta tcaaactcca gccaggtgaa cggaacatcc ggatattgtt
    24481 ccataagatg taccatgctg ttgccgactt cacaaatcaa cacgccatca tcagcaaggt
    24541 aatctgccgc gtttccaaga atgcgacgcg tcagtttaag gccgtcggtg ccagatgcca
    24601 ggcccagttc cggctcgtga cggtattcgt ttggcaggtc ggacatatct tccgcgtcga
    24661 catacggcgg gttagtgaca atcagatcgt actgcacttt cggcaagtcg cggaacagat
    24721 cggaacgaat cggaatgacg ttgtggatca gaccgtgttc ttcgatgttc tgttcagcaa
    24781 ccgccagcgc gtcgggagag atatccaccg cgtcgacttc tgcatccggg aaggcataag
    24841 cacaggcaat ggcgatgcag ccgctaccgg tacacatatc taaaatatgc tgcggttgtt
    24901 tgctgatgag tccggcaaat ttattgttga tcagttcacc aatcggcgag cgcggcacca
    24961 gcacgcgttc atcgacgtaa aattcatgac cgcagaacca ggctttgttg gtcaggtaag
    25021 ccaccggaat gcgctcgttg acgcggcgga tcacgcgttc aacaatacga tgtttttcgc
    25081 tggaggtcag acgcgcggtg cgcatatctt ccgggatatc cagcggcagg tagagcgatg
    25141 gtaacaccag ctgtacggct tcatcccacg ggttatcggt gccgtgaccg taccagatat
    25201 ttgccgcgct gaagcggctc actgaccagc gcaacatgtc ctgaatggtt tgcagctcat
    25261 ttactgcttc atcaacgaaa attttatcca cgtattcctc cagggcatga tcgcaataat
    25321 ttcggcggct agtttgccat gaagatgacg ataaatcagc attcacgcgc ggtgagtgag
    25381 gaaaaatacg tttaaaacga tcgattgtgc tacgagtcgg gtaaactgta ggaaaattag
    25441 aaatagagac agataaatga aaaagaaaac aacacttagc gaggaggacc aggctctgtt
    25501 tcgccagttg atggcgggga ctcgcaagat taagcaggac acgattgtcc accgaccgca
    25561 gcgtaaaaaa atcagcgaag tgccggtgaa acgcttgatc caggagcagg ctgatgccag
    25621 ccattatttc tccgatgagt ttcagccgtt attaaatacc gaaggtccgg tgaaatatgt
    25681 tcgcccggat gtcagccatt tcgaggcgaa gaaactgcgc cgcggcgatt attcaccgga
    25741 attgtttttg gatttacacg gtctgacgca gctgcaggcc aagcaggaac tgggcgcgtt
    25801 gattgccgcc tgtcgccgcg aacatgtgtt ttgtgcctgc gtgatgcatg ggcacgggaa
    25861 gtatattttg aagcaacaaa caccgctgtg gctggcacaa catccgcatg tgatggcatt
    25921 tcaccaggca ccgaaagagt acggcggtga tgcggctttg ttggtgttga ttgaagtgga
    25981 agagtggttg ccgccggagt tgccctgagg agttgagcgt gttgtgccag gagcgcggaa
    26041 tggcaggggc gaatgaccct gccaggtgag aaaaggtgcg ctaatacata ttcagtatgt
    26101 aagtgaatcg gcaggtagaa tctatgggct gtcgagatgt cgtgtccacg cgtagcttca
    26161 tatcatgcag ttgcctggac gtaatcggtt gcggctcagg cgtcaccgtc actttggcat
    26221 tatcacagcc ggaagtcgag aaggtcatct gctgtgcgat aaaacggcag tagacaccac
    26281 gctcatcaaa attattcccg ttacacagtt tgccattttc catcaggaaa gtgggcagtg
    26341 tttgctcaat aacaccacct gttgactgca acctgacgac tttgttatgt acaacataat
    26401 tttcattcca ggaaacatca tacggtgcca ggggcaccgc cggacatgaa gaactcacct
    26461 tcgttgggcc aatatagtca ggaaaatcat catcatacgt tttagcgaag ggatctctac
    26521 tcttaacaaa cgacgacaca atccacggac aaccatgtaa attcccatcg taataaacaa
    26581 acatctttaa ttcattacat gtccatcccg ttttggtctg gctatcatac tgctctaatc
    26641 caggacaggc tgacatggat accctgctgt ccgaaatttt cgacatagat ggttgagtag
    26701 aactatcgcc agtccacgaa actaaatccg gctgtgaatt gggcatgaat gtagccttaa
    26761 atatagcgta attaactgaa tctggcgtcg ctataatcag atgaaactca aactc
//
LOCUS       DAJVUP010000042        25508 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.042, whole genome shotgun sequence.
ACCESSION   DAJVUP010000042 DAJVUP010000000
VERSION     DAJVUP010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25508
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.042"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..2003)
                     /locus_tag="OQQ75_001619"
     CDS             complement(<1..2003)
                     /locus_tag="OQQ75_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HCS1975991.1"
                     /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSSEEMDQLGWDS
                     CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG
                     VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG
                     GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR
                     DVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA
                     VTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY
                     VWINPPAIPLSTEEMDSVFALPYKRVLHPAYGNVRIPAYEMIRFSVNIMRGCFGGCSF
                     CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE
                     QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI
                     KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY
                     FISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLAKIGYK
                     SEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHL"
     gene            complement(2114..3526)
                     /gene="ftsP"
                     /locus_tag="OQQ75_001620"
     CDS             complement(2114..3526)
                     /gene="ftsP"
                     /locus_tag="OQQ75_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsP"
                     /protein_id="HCS1975992.1"
                     /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR
                     GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT
                     VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM
                     WLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ
                     SPYVEVSRGWVRLRLLNASNSRRYQLQMSDSRPLHVISGDQGFLPAPVSVKQLSLAPG
                     ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD
                     SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE
                     PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS
                     QTLEMADRGSIGQLLVNPVP"
     gene            complement(3601..4338)
                     /gene="plsC"
                     /locus_tag="OQQ75_001621"
                     /gene_synonym="parF"
     CDS             complement(3601..4338)
                     /gene="plsC"
                     /locus_tag="OQQ75_001621"
                     /gene_synonym="parF"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HCS1975993.1"
                     /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR
                     LAPLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP
                     FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK
                     TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA
                     AHCRSIMEQKIAELDKEVAEREAAGKV"
     gene            complement(4571..6829)
                     /gene="parC"
                     /locus_tag="OQQ75_001622"
     CDS             complement(4571..6829)
                     /gene="parC"
                     /locus_tag="OQQ75_001622"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HCS1975994.1"
                     /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR
                     IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG
                     QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR
                     LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE
                     AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN
                     KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL
                     DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI
                     IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI
                     LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG
                     WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ
                     GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL
                     PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG
                     EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID
                     SPRRASSGDSEE"
     gene            complement(7375..7857)
                     /locus_tag="OQQ75_001623"
     CDS             complement(7375..7857)
                     /locus_tag="OQQ75_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HCS1975995.1"
                     /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET
                     GLSPVNQSQTFGVAWDDPATTAPKAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA
                     RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGMTEQRLETDVYVPLA
                     "
     gene            complement(7910..8302)
                     /gene="ygiW"
                     /locus_tag="OQQ75_001624"
     CDS             complement(7910..8302)
                     /gene="ygiW"
                     /locus_tag="OQQ75_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB fold stress tolerance protein YgiW"
                     /protein_id="HCS1975996.1"
                     /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNG
                     SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK
                     DTVEIQGEVDKDWNSVEIDVKQIRKVNP"
     gene            8454..9113
                     /gene="qseB"
                     /locus_tag="OQQ75_001625"
     CDS             8454..9113
                     /gene="qseB"
                     /locus_tag="OQQ75_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator QseB"
                     /protein_id="HCS1975997.1"
                     /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP
                     YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP
                     FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLEL
                     LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE
                     K"
     gene            9110..10459
                     /gene="qseC"
                     /locus_tag="OQQ75_001626"
     CDS             9110..10459
                     /gene="qseC"
                     /locus_tag="OQQ75_001626"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     QseC"
                     /protein_id="HCS1975998.1"
                     /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF
                     DTQLMLFAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLNDS
                     DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV
                     AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP
                     LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL
                     LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID
                     VRLTLNVQGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGV
                     TPEALARIGERFYRPSGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW"
     gene            10569..11150
                     /gene="mdaB"
                     /locus_tag="OQQ75_001627"
     CDS             10569..11150
                     /gene="mdaB"
                     /locus_tag="OQQ75_001627"
                     /EC_number="1.6.5.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase MdaB"
                     /protein_id="HCS1975999.1"
                     /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA
                     DSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK
                     DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM
                     EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG"
     gene            11181..11495
                     /locus_tag="OQQ75_001628"
     CDS             11181..11495
                     /locus_tag="OQQ75_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HCS1976000.1"
                     /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV
                     DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP
                     GI"
     gene            complement(11543..13435)
                     /gene="parE"
                     /locus_tag="OQQ75_001629"
     CDS             complement(11543..13435)
                     /gene="parE"
                     /locus_tag="OQQ75_001629"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HCS1976001.1"
                     /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV
                     DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN
                     KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRN
                     TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG
                     LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG
                     GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
                     ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT
                     SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
                     SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK
                     HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL
                     GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD
                     MAEIEV"
     gene            complement(13464..14045)
                     /gene="yqiA"
                     /locus_tag="OQQ75_001630"
     CDS             complement(13464..14045)
                     /gene="yqiA"
                     /locus_tag="OQQ75_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase YqiA"
                     /protein_id="HCS1976002.1"
                     /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP
                     SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
                     LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
                     SCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL"
     gene            complement(14045..14872)
                     /gene="cpdA"
                     /locus_tag="OQQ75_001631"
     CDS             complement(14045..14872)
                     /gene="cpdA"
                     /locus_tag="OQQ75_001631"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HCS1976003.1"
                     /translation="MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQA
                     VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY
                     SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL
                     LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL
                     ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY"
     gene            complement(14897..15319)
                     /locus_tag="OQQ75_001632"
     CDS             complement(14897..15319)
                     /locus_tag="OQQ75_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 family protein"
                     /protein_id="HCS1976004.1"
                     /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ
                     YRLTTVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY
                     DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY"
     gene            complement(15320..15949)
                     /gene="nudF"
                     /locus_tag="OQQ75_001633"
     CDS             complement(15320..15949)
                     /gene="nudF"
                     /locus_tag="OQQ75_001633"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HCS1976005.1"
                     /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHSLFNGQ
                     MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG
                     ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA
                     DENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQALKNEWA"
     gene            16154..17635
                     /gene="tolC"
                     /locus_tag="OQQ75_001634"
     CDS             16154..17635
                     /gene="tolC"
                     /locus_tag="OQQ75_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane channel protein TolC"
                     /protein_id="HCS1976006.1"
                     /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA
                     DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSK
                     WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD
                     QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL
                     NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST
                     GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA
                     SEQLESAHRSIVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV
                     DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE
                     NVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN"
     gene            17783..18454
                     /locus_tag="OQQ75_001635"
     CDS             17783..18454
                     /locus_tag="OQQ75_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417509.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 family protein"
                     /protein_id="HCS1976007.1"
                     /translation="MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLASCEKSDETV
                     SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA
                     QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY
                     TDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSS
                     RSMGG"
     gene            18460..19620
                     /locus_tag="OQQ75_001636"
     CDS             18460..19620
                     /locus_tag="OQQ75_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1976008.1"
                     /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLPLAQ
                     VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD
                     LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID
                     RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKSQ
                     FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM
                     FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI
                     VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE"
     gene            complement(19658..20446)
                     /gene="ygiD"
                     /locus_tag="OQQ75_001637"
     CDS             complement(19658..20446)
                     /gene="ygiD"
                     /locus_tag="OQQ75_001637"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001356237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HCS1976009.1"
                     /translation="MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVV
                     VSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVT
                     LDKEARGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML
                     VASGNVVHNLRTVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGAL
                     SNPTPEHYLPLLYVLGAWDGQEPITIPVDGIEMGSLSMLSVQIG"
     gene            20589..21350
                     /gene="zupT"
                     /locus_tag="OQQ75_001638"
     CDS             20589..21350
                     /gene="zupT"
                     /locus_tag="OQQ75_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HCS1976010.1"
                     /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM
                     LLISLMEMLPAALAAEGISPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLP
                     KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV
                     YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAVAGIMVALSVDELMP
                     LAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG"
     gene            complement(21408..21578)
                     /locus_tag="OQQ75_001639"
     CDS             complement(21408..21578)
                     /locus_tag="OQQ75_001639"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976011.1"
                     /translation="MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYL
                     NSTREETAEKVE"
     gene            complement(21838..22491)
                     /gene="ribB"
                     /locus_tag="OQQ75_001640"
     CDS             complement(21838..22491)
                     /gene="ribB"
                     /locus_tag="OQQ75_001640"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HCS1976012.1"
                     /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI
                     FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA
                     EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL
                     MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS"
     regulatory      complement(22595..22743)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            22865..23155
                     /gene="ubiK"
                     /locus_tag="OQQ75_001641"
     CDS             22865..23155
                     /gene="ubiK"
                     /locus_tag="OQQ75_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis accessory factor UbiK"
                     /protein_id="HCS1976013.1"
                     /translation="MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRL
                     DLVSREEFDVQTQVLLRTREKLALLEQRMSELENRSTEIKKQPDPETLPPTL"
     gene            23439..23990
                     /locus_tag="OQQ75_001642"
     CDS             23439..23990
                     /locus_tag="OQQ75_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial-like protein"
                     /protein_id="HCS1976014.1"
                     /translation="MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIK
                     PGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTM
                     TGQTDLLKNTKETEIGGATGVGVRILNSQSGEVTLGTPVVITFNNTNSYQELNFKVRM
                     ESPGKDATPGNVYAQTDYKIAYE"
     gene            24050..>25508
                     /locus_tag="OQQ75_001643"
     CDS             24050..>25508
                     /locus_tag="OQQ75_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1976015.1"
                     /translation="MYKKLKLTTISELIKNIYCSLSVLIIGCASAYAVEFNKDLIEAE
                     DRENVNLSQFETDGQLPVGKYSLNAIINNKRTPIHLDLQWVLIDNQTAVCLTPEQLTL
                     LGFTDEIIEEAQQNLIDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYKDANWTPP
                     ELWDHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFN
                     NGKSQANNLDFPRIYLFRPIPAINAKLTIGQYDTESSIFDSFHFSGVSLKSDENMLPP
                     DLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEEE
                     DGQVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNV
                     SLHGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDTQLHNQDKETGYSYRANYSK
                     RFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTN"
BASE COUNT         6394 a         6721 c         6293 g         6100 t
ORIGIN      
        1 atcagatgct ttttacccat cgcttccagc gcctggcgga ttaacggcca gtttgccgga
       61 tcgtggtaac gcaacaacgc tttatgcaaa cgacgctgct tgtcgccctt cggtacgaag
      121 acgtcttcac tcttataacc aatcttcgcc agcggttttt tcccggtgta atacatggtg
      181 gttgagttcg ccagcggcga tgggtagaag ttctgtacct ggtcgagacg gaaacgatgc
      241 tttttcagcc acagcgccag attcaccata tcttcatcac gcgtaccggg gtgcgcggag
      301 atgaaatagg ggatcagata ctgctcttta cctgcctgtt ttgagtaagt atcgaacagc
      361 tctttaaagc ggtcatagct gcccatgccc ggcttcatca tcttcgataa cggcccttct
      421 tcggtatgtt ccggggcaat cttcagataa ccgccgacgt gatgggtcgc cagttctttg
      481 atatagcgcg gatcttccac ggcgatgtca taacgcacac cagaggcaat caggatcttt
      541 ttaatgcctt tcagatcacg cgcacggcga tagaggttga tcgttggttc gtggttcgtg
      601 tccatgtgcg gacaaatatc cggataaacg cacgacaaac ggcggcaggt ttgctcagcg
      661 cgtggcgatt tgcagcgcaa catatacatg ttggcagttg gcccaccgag atcggaaatt
      721 acgcccgtaa aacctggaac ggtgtcgcgg atcgcttcga tctcattaat gatcgaatct
      781 tcggaacggc tctgaataat gcgcccttcg tgctcggtga tagaacagaa agagcagccg
      841 ccaaagcagc cacgcataat gttgaccgaa aaacggatca tttcgtaagc cggaatacgg
      901 acattgccat aggccggatg tagcacgcgc ttgtatggca gcgcaaaaac gctgtccatc
      961 tcttcggtag aaagcggaat agcaggcggg ttgatccaca catagcggtc gccgtgtttt
     1021 tgcatcaatg cgcgggcaca gcctgggttg gtttcgtggt gcagaatacg cgaagcatgg
     1081 gcgtacagca ctttatcgcc cttcactttc tcgaaagaag gcagcaacac gtaggttttt
     1141 tcccacggtt tcgggcgcgg tggctgcacg gttacggctt tggcttcctg ctttttcggt
     1201 gccaccggtt tgttatccgc gcacggcaaa tcttcaccat acggatgcgg gattgggtcg
     1261 atttttccag gggtatcaag acgggtggaa tccacgccgc tccagccagg cagggcctct
     1321 ttcacgataa tcgcggtatt acgcacatcg cggatttcac taatcggctc gcccatcgcc
     1381 agacggtgcg ccacctccac cagcggacgc tcaccgttac caaacatcag catgtcggct
     1441 ttcgaatcca ccagcacgga acggcgcacg gtatcggacc agtaatcata atgtgcggta
     1501 cgacgcagac tagcctcaat accgccgagg atcaccggta catctttcca cgcctcttta
     1561 caacgctggg tataaaccag tgtggcgcga tccgggcgct tacccgcgac gttatccggc
     1621 gtgtaggcat cgtcatgacg taaacggcga tcggcggtat aacggttgat catcgaatcc
     1681 atgttgccag cagtaacacc gaaaaacaga ttcggtttac ccagacgcat aaagtcgtct
     1741 ttgctgctcc agtccggctg ggcgatgatc ccgacgcgaa agccctgcgc ttccagcata
     1801 cgaccgcaaa tcgccatccc gaagcttggg tgatcgacat acgcgtcgcc agtaaccaaa
     1861 atgatgtcgc agctatccca gccaagttga tccatctctt cactagacat cggcaaaaac
     1921 ggtgccggtc caaaacaggc ggcccagtac tgcggccagg agaacaggtc gcgatccggt
     1981 tggatcaggg agatagagct cattttgctt ccagaaatga taaaaaaata atcaaaggcc
     2041 ggggattata agccggaacg aaagagaaat cgaaaagtat tccatactcg ccctcctcgg
     2101 gcgagtatga agattacggt accggattga ctaacagttg cccaatcgag ccacggtccg
     2161 ccatttccag cgtctgactg ttgaagtaga acgggaagtg cgcccaggaa ggctgaccga
     2221 aataaacaag cagctccact tgtccgtcaa cccaaacggt atctttccag cctctgtctt
     2281 ccgggaacgg catcgcacca ttcacgttac ggatctggaa catcacgcct tcaatatgga
     2341 acgcttgcgg ctcgtccgcg cgtaccgtcc agcgttccca cgttccttgc tgcgcggtga
     2401 catcaatacg gttgacgtcc cacagttgtc cattaatacc cgggtcatca cccagactga
     2461 tatcgcgact gcgaatcggc gaaccggcca tgatttcagt tggcagcaag cgcatcggaa
     2521 gactgtctgt gaccagcggc agaaggccgg ttgggcgcag cgttagcacc agggtagaaa
     2581 ccagaatgct ggatggctca aagaagccac gaatacgatc aacaatgctc gccgcttcgc
     2641 cacaggtgat cgacacttca tcaccgttgc tcatatccac cagaatctcg cggcgctcgc
     2701 ccggtgccaa cgaaagttgc ttcaccgata caggagcagg caggaatccc tgatcgccag
     2761 aaatcacatg taacgggcga ctatcgctca tctgtagttg atagcgacga gagttcgacg
     2821 cgttcagcag tcgcaagcgc acccagccac gcgagacttc aacgtacggg ctttgtacac
     2881 cgttaaccag cagcgtatca ccaacaaagc cgccgcttcc cggttcgttg tattctggcg
     2941 taccaaagtt atccagccgt ttatcctgga taatgaccgg aaaatcatcc acaccataat
     3001 ggttggggat aggcagcgac ttgctgactt catcttccac cagccacatt ccggcaaggc
     3061 cgttatagac ctgctgagcc gtgcggttgg gagtattggc gtgataccac agagtagctg
     3121 cgttctggcg aatgggcagt acgggtgccc agtcagcgtt tggcgacatc atccgtgccg
     3181 gaccgcccat cagcgggcct ggtacctgta gcccggccac cgtcattgag acattttctg
     3241 tcaggcggtt gctgtaaata agcttaacat cgtcgccctt ccagacgcgg atagtcggcc
     3301 ccaggtaacg accattgatt ccccagaccg acgcgcgtgt ccctggcgta aatgaccagt
     3361 gcgcacgttg tacagtcata aacagcggtt gcccacggcg agattcaagt agcggcggaa
     3421 cgggtagcgg ttgctgttgc ccggctgcgc tggccttcag gggaacagcg ccggcacaaa
     3481 gtgcaatccc cgatgcctga atgaactgac gccgactgag tgacatattt gctccatgta
     3541 aaactggcta aagtaatacc gtgcaggaaa gtgttccccg caaaaataca gattgccgac
     3601 ttaaactttt ccggcggctt cgcgttctgc gacttcttta tcgagctcgg cgattttttg
     3661 ttccattatc gaacgacaat gggcagccag ctcacgaacc tgatctttgc catactgact
     3721 gacgtcaatt ggcggcagca tttcgacaat caccagaccg ttgtgcagtc gattaagatt
     3781 aatcttattc gaagttgtag agacgcacac gggaataatc gggacgcccg ccgcaattgc
     3841 cgcgtgaaat gctccagtct tgaacggtag caggccgcga ccacggctgc gggttccttc
     3901 cgggaacatc cagatggaaa tacggcgttt tttgaaatga ttcacgactt ccgcaatggt
     3961 gccgtgagct ttagtgcgat tgtttctgtc gatcaataag ttgccggtta accagtacaa
     4021 ctgcccgaag aaggggatcc acagcaagct ctttttacct accgtcaccg tcggcggttg
     4081 cacaatgttc gatgctgtca ccatgtcata gttgttctgg tggttagcga tatagatagc
     4141 attgccgtag ctttcagcat ctgcaggttt gcggcactca actttcaggc cgaacagcgg
     4201 cgcaagacgg ccaaacatat gcccaaaggt ggccacatgt ttcgggttac gcgggctgaa
     4261 aaggcagtaa atggagccga atacacagac taagatgctg taaatcacgg taataataag
     4321 acgaaagata tatagcataa caacctctga aggtctgaga gactggcatt gtacgtcacc
     4381 tgaaatcagg ttagggcatt gttaaaagcc gctctctgga aaagcgtatt gttaatcgca
     4441 acgcatgaat aaacaacggt ttcaagggaa tttttatcgt ttccgggggt tgaatacgct
     4501 gccggatgac gacttaacgt ttcatccggc gttccttgca agcgggagga aacaggccct
     4561 ccccggcata ttactcttcg ctatcaccgc tgctggcacg gcgaggagag tcgatctcaa
     4621 cacgatcgat acgctgcaaa ccgcgcatca acgtaccgcg gcgtccacgt tcgccagtga
     4681 ctttctgtaa ctcttccggg cgcagtttaa ttttgcgttt cccaacatga atggtcagcg
     4741 tgctttgcgg cggcagaacg tacaattgcg ccagaccatc ttctccacgc gcggcttctg
     4801 ccgatggaat gttgataatc ttgttgcctt tgcccttcga cagctgcggc agatcgctta
     4861 ccgggaacat caacatacgg cctgcctgag tgattgccag cagcatatcg gaagcatctt
     4921 caatcaccac cggcggcata acatgggcat tttccggtaa ggtgatcaaa gccttacctg
     4981 cacggttacg cgccaccaga tcgttaaagg tgcagacgaa accgtaaccc gcatcggaag
     5041 ccatcagcag tttctgatcg tcgctttcca tcagcatatg gtcaacggtc gccccaggcg
     5101 gcaacgttaa tttgccggtg agtggttcgc cctgaccacg cgccgacggc agcgtaatcg
     5161 ggtcgatggc atagctacga ccggtggaat caacaaacac taccggttgg ttgctcttac
     5221 ctttcaccgc cgctttgaag ctatcacccg ctttataatt caggcccggc gcgtcgatat
     5281 catggccttt agcgctgcgt acccagccca tctgcgacag cacaatggtg acaggttcag
     5341 acggcagcat gtcgtgctcg ctcatcgctt tcgcttcttc gcgttcctgc aacggcgaac
     5401 gacgatcgtc accgtaggct tgcgcgtctg cctgcagttc tttcttcagc aggttattca
     5461 ttttacgctc ggaaaccaaa atgccctgca actggtcgcg ctctttttcc agctcactct
     5521 gctcaccgcg aatcttcatc tcttccagtt tggcaagatg acgcagtttc agttcgagga
     5581 tcgcttccgc ctgggtttcc gtaaggccaa accgcgacat cagcgccggt ttcggttcat
     5641 cttcgttacg aatgatctca atcacttcgt cgatgttgag aaacgccacc agcaaacctt
     5701 ccaggatatg caggcgcttg aggactttct ccagacgata gttcagtcgg cggcgcacgg
     5761 tatcgcgacg gaacaccagc cattcggaga ggatttccag caggtttttc accgccggac
     5821 gaccatccag accgatcata ttgaggttaa tgcgatagct cttttccaga tcggtggtag
     5881 cgaagaggtg gttcatcacc tgatccatat ccacgcggtt ggaacgcggc acaatcacca
     5941 gacgggtcgg gttctcgtgg tcagattcat cgcgcagatc gtcaaccatc ggcagctttt
     6001 tgttgcgcat ttgcgcagca atttgctcca gtacgcgcgc acctgaaacc tgatgcggca
     6061 atgcgctgat aaccaccgcg ccatcttctt tcttccacac cgcgcgcata cgcactgaac
     6121 cacgtccgtt ctcgtagatt ttacggatct cggcgcgcga agtgataatt tccgcttcag
     6181 tcggataatc cggcccctgc acgatatcca gcagctgatc gagcgtggtt ttcggctggt
     6241 cgattaatgc gattgccgcc tgagctactt cacgcaggtt atgcggtgga atatcggtcg
     6301 ccatgccgac ggcaataccg gtggtgccgt taagcaaaat gtttggcaga cgggcaggca
     6361 gcattttcgg ctcctgcaaa gtgccgtcga agtttggcac ccagtcagcc gtcccctgcc
     6421 ccagctcgct caatagcagc tcggaatatt tcgacaaccg ggattcggtg taacgcattg
     6481 ccgcgaacga tttcggatcg tccggcgcgc cccagttccc ctgaccatca accagcggat
     6541 aacggtaaga gaacggctgc gccatcagga ccatcgcttc ataacaggcg ctatcgccgt
     6601 gcggatggta tttacccagt acgtcaccga cggtacgggc cgatttttta aatttggcgc
     6661 tggcattcag gcccagttca gacatcgcat acacaatgcg gcgctgaaca ggtttaagac
     6721 catcgccaat aaacggcaac gcacggtcca tgatcacgta catggagtag tttaagtagg
     6781 cgttttccgt aaattcatgt agcgcaaggc gctctgccat atcgctcatt aattctgatt
     6841 cctcaactta ttcgccagcc ttcaaagggg caatattgcc ggagatacta cattatctgc
     6901 cgcgtcgagt cacaggagat cagcgtgaat agcgccgccg gacgtgctcc gacggcgata
     6961 aaggcatcaa tgtgccttga tatacaactc tttgctgtag acttgatcgg catagagggc
     7021 agcacaaggt tgcgcccatg ccacaccact cggcatgggg gtccgctccg ggcgattcga
     7081 gaagttgagg ttatgcgagt ccagggaagc ctaaagcatc aaagtagtcg actgtaagta
     7141 tacggttcag cccagtttag ctgtgtctcc accagtgccc cgcgcctcct gccataagtg
     7201 cggcttgctc atggataccc ccgagacggc ttacggcgca ccggataata aatttcgcgt
     7261 atacatggta ttccttaccg gagaaattat aagcccaaca acaatacgcc tgtggcattg
     7321 ttcgctcaaa cttatcgcga gtgatttggc tcacactccg gtaaagattc cccatcacgc
     7381 taacggcaca taaacatccg tttccagtcg ctgttctgtc ataccttcgg caagattggt
     7441 gtagtgaaac agaatcggtg ctttacgcat tttctcgccg cttgcaggca gccagtggcg
     7501 aatgatgccc cataccgtgt gtgaaatatc gtccagctcg ccaacgtggc gggccacggc
     7561 ataacgtcca ccggtaagtt caccattgct cacaccataa cgattatcgg gaatcggttc
     7621 gctaacgctg ccgcagatat caaagcgaaa cgctttcggt gcggtggtgg cagggtcgtc
     7681 ccaggcgacg ccaaaagtct ggctttggtt aacaggagaa agccccgtct ctttacgcca
     7741 catgataaat ttcgccacac tgtagttgag caactcaggg ctacagcggt gcggcaacat
     7801 cgccacaggg attgatggga aatcgataat gtttacatcc agtgtcaggt ttgtcatttt
     7861 gcctccctgc gaaattattc ccgggaacgc gtcccgggag cggtaacaat tacggattta
     7921 ctttgcggat ctgtttgacg tcaatttcaa cagaattcca gtctttatcg acttccccct
     7981 gaatctcaac cgtatctttc ggcgtcaccg tcacaccgtt ccagcgtttg tggtcgatat
     8041 caacattgat agtaccgctg gcatctttaa acacgtagag atcgtcagag atgcgttcaa
     8101 cgatattgcc gcgcagggtt acccaggtgt cgtcacgcag ggattttgcg ctttctacag
     8161 tcgttacgct gccgttcggc ccctggaatc ctccggcctg actttgcgtt gccgatgggc
     8221 cagaaaaacc gccctgctct gctgccatca ccggtgcact gcacagggcc attactgcga
     8281 ttactgctgc gaattttttc atgtttatta ctccctttaa tgtctgtttc cgagcattta
     8341 acaagatagt ccttaacaac ttcttaaggg aaaaaaataa aatttaatgc tgtacagagc
     8401 gcgttacaac acggtttact ggcagcaaat acggttatcg cagggatgaa aaaatgcgaa
     8461 ttttactgat agaagatgac atgctgattg gcgacggcat caaaactggc cttagtaaaa
     8521 tgggttttag tgtcgactgg tttacacaag gtcgtcaggg aaaagaggcg ctttatagcg
     8581 caccttatga tgcggtgatc ctggatttaa ccttaccagg catggatggt cgcgatattt
     8641 tgcgcgaatg gcgagagaaa ggtcagcgtg agccggtact gatcctgacc gcgcgtgatg
     8701 cgttagcgga acgtgtagaa gggctgcgtc tgggagctga cgattatctg tgtaaacctt
     8761 ttgcgttgat agaagtcgcc gccaggctgg aggctctgat gcgccgaacc aacggccagg
     8821 ccagcaacga gctgcgccac ggtaacgtca tgctcgaccc cggcaaacgt atcgccacgc
     8881 tggctagcga acccttaaca ctgaaaccaa aagaatttgc cctgctggaa ttactgatgc
     8941 gtaacgctgg tcgggtactg ccgcgcaaac tgattgaaga gaaactgtat acctgggacg
     9001 aagaggtcac cagtaatgcc gttgaagtgc atgtgcatca tctgcgacgc aaactcggta
     9061 gtgattttat tcgtaccgtg catggtattg gctacacatt aggtgagaaa tgaaatttac
     9121 ccaacgtctt agtctgcgcg tcaggctgac gctaatcttt ttaattctgg cctcggtgac
     9181 ctggctgctt tccagctttg tcgcctggaa acaaacaacg gataacgtcg atgaattgtt
     9241 cgacacccaa ctgatgctgt ttgccaagcg gttaagtacg ctcgatctca acgaaatcaa
     9301 cgcggcggat cgcatggcac agacgccaaa taaattaaaa cacggtcatg ttgatgacga
     9361 tgcgctgacc tttgccatct ttacccacga cggcagaatg gtccttaatg atagcgataa
     9421 cggagaagat attccctata gctatcaacg ggaaggtttt gctgacgggc aactggtcgg
     9481 tgaagacgat ccttggcgtt ttgtctggat gacctcacct gatggcaaat atcgcatcgt
     9541 tgttggccag gaatgggaat accgtgaaga catggcgctg gcgattgttg ccgggcaatt
     9601 gatcccgtgg ctggtcgcac tgccgattat gttaatcatc atgatggtac tactgggtcg
     9661 tgaactcgcg ccgctgaaca aactggcgct ggcactacgt atgcgtgacc ctgactcgga
     9721 aaaaccacta aacgcgactg gcgtacccag cgaagtgcga ccactggttg agtcgctaaa
     9781 tcaactgttc gcccgcacac atgcgatgat ggttcgagaa cgacgcttta cctccgatgc
     9841 agctcacgaa ctacgtagcc cgttaacagc gctgaaagtg caaaccgaag ttgcgcagct
     9901 ctctgacgat gatccgcagg cacggaaaaa agcactgctc caattacatt ccgggatcga
     9961 tcgcgctact cgtctggttg atcaactgct cacgctatcg cggctggact cactggataa
    10021 ccttcaggac gtcgcggaga tcccgcttga agatctcctg caatcgtcgg tgatggatat
    10081 ttaccacacg gcgcagcagg cgaaaattga cgtgcgactg acactcaatg tccagggcat
    10141 caaacgcacc ggacaaccgc tattgctaag tttgttggtg cgaaatttgc tggataacgc
    10201 cgtgcgttac agtccacagg gcagcgtggt ggacgtcacg ctgaatgccg ataatttcat
    10261 cgtgagggat aacggccccg gtgtgacacc agaggcactg gcgcgaattg gcgaacgctt
    10321 ctatcgcccc tccggacaaa ccgctaccgg cagtggactt gggctatcga ttgtccagcg
    10381 aatcgccaag ctgcatggca tgaatgttga gtttgggaat gcggaacaag gtggatttga
    10441 ggcgaaagta agctggtaag ggtaagactt ttgctaaatt cgcaaaagac tttgcacatt
    10501 ttgctaattt caccgtaccg ctctgtgacg tactatagtc ggcaaacgtc tcaccttgag
    10561 gttaaaaaat gagcaacatt ctgattatca acggcgcgaa aaaattcgcc cactccaatg
    10621 gtcaactgaa tgacaccctg accgaagtcg cggatggcac actgcgcgac ctcgggcatg
    10681 atgttcgcat cgttcgcgcc gacagcgact acgatgtcaa agcggaagta caaaactttc
    10741 tctgggctga tgtggtgatc tggcagatgc caggctggtg gatgggcgcg ccgtggacag
    10801 tgaaaaaata cattgatgat gtattcaccg aaggtcacgg gacgctgtat gccagcgatg
    10861 gccgtacccg caaagatccg tcaaaaaaat acggttccgg cggcctggta cagggcaaaa
    10921 aatatatgct ttctctgacc tggaacgcac caatggaagc cttcaccgaa aaagatcaat
    10981 tcttccacgg cgttggcgtc gacggtgtgt atctgccgtt ccataaagca aaccaattcc
    11041 ttggcatgga accgctgccg acatttatcg ctaatgacgt gataaaaatg cctgatgttc
    11101 cccgctatac tgaagaatat cgcaagcatc ttgtggaaat ttttggttaa ctagagctca
    11161 ggctttagaa ggagttaacc atgcttaccg taatcgcaga aatccgtact cgtcctggtc
    11221 aacatcaccg tcaggcggta ttggatcagt ttgctaaaat cgttccaacc gtactgaaag
    11281 aagaaggttg ccacggctat gcgccaatgg tggattgcgc tgctggcgtg agtttccagt
    11341 ctatggcacc ggattctatc gtgatgattg agcagtggga aagcatcgcg caccttgaag
    11401 cgcatctgca aaccccgcac atgaaggcgt acagcgaagc cgtaaaaggt gacgtgctgg
    11461 agatgaatat tcgtattctg cagccaggga tttaatcctg ccttgtttgc ccggccatcc
    11521 tgaccgggca atgttctttc ctttaaacct caatctccgc catgtcgcct ttctcttgca
    11581 accagttgcg gcgatcttcc gagcgtttct tcgccagtag catgtccatc atcgcgtcag
    11641 tacgctgatc gtcttcatca tcgatagtca actgcaccag acggcgagtg ttcggatcaa
    11701 gcgtggtttc gcgcaattgc atcgggttca tttcccccag acctttaaaa cgctggacgt
    11761 tcggcttgcc tttcttgcgt tttaattgct caagtacgcc ctctttctct tcttccgtca
    11821 gcgcgtaata aacctctttc ccgagatcaa tacggtagag cggtggcagt gcgacgtaaa
    11881 cgtgaccgtg tttcaccaac gcgcggaagt gttttacaaa caaagcgcag agcagcgtgg
    11941 caatgtgcag accatcggag tcagcatccg ccaggataca gatcttgccg taacgaagct
    12001 ggctcaaatc gtcgctgtca ggatcgatac cgatcgctac cgaaatatcg tgcacttcct
    12061 gcgaagccag cacttcgtcg gaagagactt cccaggtgtt aaggatctta cctttcagtg
    12121 gcatgatcgc ctgatattcg cgatcgcgcg cctgcttggc agatccgcct gcggagtcac
    12181 cttccacaag aaacagttcg gtgcggttaa ggtcctgcgc ggtacagtca gccagtttgc
    12241 caggcagcgc cggaccgctg gtcagctttt tacgcaccac ttttttagcc gcacgcatac
    12301 gacgctgggc gctggaaatc gccatctctg ccagcaactc cgccgcctga acgttctggt
    12361 tcagccacag gataaaggca tctttcacca cgccagaaac gaatgccgcg cactgacgcg
    12421 aagagagacg ctctttggtc tgcccggcaa actgcggatc ctgcattttt actgacagca
    12481 cataggcgca gcgatcccag atatcttccg ccgacagctt tacaccgcgc ggcagaatgt
    12541 tgcggtattc acagaactca cgcatcgcgt ccagcaggcc ctgacgcaga ccattaacat
    12601 gggtaccgcc ctgcatcgtt gggatcaggt tgacgtagct ttcggtcagc agttcaccgc
    12661 cttccggcag ccacagtagc gcccagtcca ccgcttcagt atcgccagcg aaattaccga
    12721 taaacggttt ttctggcagc gtcggtaaac cgtttaccgc ttccgccagg taatcattca
    12781 gaccgtcctg atagcaccag cgctgttcgg tgttgttgat ctcatcttta aaggtaatct
    12841 caacgccggg gcacagtact gctttggctt tcagcacatg cgtcaggcgt gaaacagaaa
    12901 aacgcgggct atcgaagaag gtttcatccg gccagaaatg gacgctggtt ccggtattgc
    12961 gtttaccgca agtgccgaca acctgtaaat cctgcacctt ttcgccattt tcaaaggcga
    13021 tgttataaat ctgaccatcg cggcgcacgt taacttctac gcgcttcgac agggcgttaa
    13081 ccaccgaaat ccccacgcca tgcaggccgc cagagaactg gtaatttttg ttagagaatt
    13141 taccgcctgc atgcagacgg caaagaatca gttcaaccgc cggtacaccc tcttccgggt
    13201 gaatatccac cggcatcccg cgcccatcgt caataacttc taacgactgg tcagcatgta
    13261 aaataacgtc cacgcgtttt gcgtgacccg ccagtgcttc atccacactg ttatcaatga
    13321 cttcttgccc caaatggtta gggcgagtgg tatcggtata catccccgga cggcggcgaa
    13381 ccggctcaag cccggtgagt acctcaatgg catcagcgtt ataagtttgc gtcatggttt
    13441 aagttagtaa ttcgagttga tcgtcagaga tggtgcagac caagaaaatc gacgatcggg
    13501 ttgaaataat cttcgaagcc cgtgaatgcg tggttgccgc cttctatgac agtctggcgg
    13561 caggaagcgt agtacgccac cgcctggcgg taatccagca cttcatctcc cgtctgttgc
    13621 agcagccaga tcaaatccgg cgcttccagc gggtcaatct gcatgacttt aagatcgtaa
    13681 atatggcgtg actctagcac atattgctgc ccggtgtagg ggttctcgtt ctgaccgaga
    13741 tagtccgtca gcagttcaaa cgggcgcacc gccgggttta ccaccactgc gggcagcata
    13801 aaacattgtg acaaccaggt ggcgtaatat ccccccagtg acgaaccgac aatacccagc
    13861 gaatcgccgc catgttccag gacaatggat tccagcagct ctgccgcgtc ggaaggatac
    13921 ggcggcaact gcggaatgat catctcaacg tcagggtgat gttccgccag ccagtttttt
    13981 aacaagctcg cttttgcaga gcgcggcgag ctgttgaaac cgtgtaaata aagaagcgta
    14041 gacatcagta gccttctgaa gcggtatcag gttggaaacg tgtgtccgcc aggcgatgca
    14101 cctcggtggt cagcgtgcca tcagcatgta actcgagagt acgccagccg ggcgcgatgg
    14161 tatccagcgt aaagttggaa cagtgcggct taaactgcac acaggtcgac ggcgttgcca
    14221 gcaggcggcg accgttccag tcgagatcca gctcctgatg aatatgaccg cacagcaagt
    14281 atttgacgtg cggaaacttc gccagcacgg tatccagttc gcccgcgtta cgcagactgt
    14341 gttgatcgag ccaactacaa cccgcaggta gcggatgatg atgcagcagc agcaacgtat
    14401 ggcgttctgg cgcatcggcc agtttacgtt ccagccactc aagctgaaac tcgctcagct
    14461 caccgtgcgg cacgccaaac acctggctat ccagcaacag gatttgccat tgctcaccaa
    14521 taaacacgcg cttcgccggg gagatacccg catcctgtaa cgcgctgtac atcgcgggct
    14581 ggaaatcgtg gttgcccggc agccagacgc agggcgcacg aaaacttgcg atgccttcag
    14641 cgaaatgctg ataggccgca gaggattgat cctgcgctaa atcacctgtc gcgacaatca
    14701 ggtcgaattc gtgctgatgt ggacgaatcg cctccagcac cgcctggtag ctttcccagg
    14761 tgtttacccc taacagggct tcgtgctttt gtgcaaacag gtgagtatcg gtaatttgta
    14821 aaatcctgac tctggcctca ccagccagag gaagggttaa caggctttcc aaatggtgtc
    14881 cttaggtttc acgacgctag taaaccggaa tcgccatcgc tccatgtgct aaacagtatc
    14941 gcaaccagtc cgctaaaaac tggttaattt gatgcttttc gtcgcgttga tgcaactttt
    15001 tattaggata atcataccgc gctttgaagc gaaaaatctg ctggcttgaa cacacttcag
    15061 ccaccatcgc gtcatgatac agacgcaccg tcattgacgg aaggctccag taactgatcg
    15121 cgggcgcagt ctgttctatt gtcaccaggg tagtgtatcg ggtcgattcc acagtcgtca
    15181 gccgatattg tgcgtttgcc acctgatagc ttacagtttc gccgggtgcg tcattgcgcg
    15241 gtaacaaacg gcgcaattgt gaaaagttca tctcgcacag gcgcatcatt tcaggaaagt
    15301 caggtgtgta acgcttcatt tatgcccact cattttttaa cgcttggtgg tgcagctgca
    15361 gccattgcaa agcgatgacc gacgctgcgt tgtcgatttt cccctcttct acccactggt
    15421 atgcctgttc ccggcttacc acatgaacgc gaatatcttc gttttcatca gccagaccat
    15481 gaataccgct tgcggtcgtg gcgtccactt cgcccaccat aattgacgaa cgctcactgg
    15541 tgccccccgg gcttgccagg aaacttaaca ccggtttggt ccgtttgact atcagccccg
    15601 cctcttcaat cgcttcgcga cgggcaacat cttccacact ttcaccctct tcaatcatcc
    15661 cggcaaccat ctccagtagc cagggggttt cgctagtgtc gtacgcggca attcgaatct
    15721 gctcaatcag cacaacttca tcacgcactg ggtcaaaggg tagcaagact gcggcgtgac
    15781 cgcgctcaaa aatttcccgc cgcacctcat gactcatttg cccgttgaat agactatgac
    15841 gaaatctata aagatctaat gaaaaaaagc cgcgataaag tgtttctcgt gcaataattt
    15901 ctacatcgtt tttgccaaat gtaacgggca ggttgtctgg cttaagcatt gttaatgtcc
    15961 tggcactaat agtgaattaa atgtgaattt cagcgacgtt tgactgccgt ttgagcagtc
    16021 atgtgttaaa ttgaggcaca ttaacgccct atggcacgta acgccaacct tttgcggtag
    16081 cggcttctgc tagaatccgc aataatttta cagtttgatc gcgctaaata ctgcttcacc
    16141 acaaggaatg caaatgaaga aattgctccc cattcttatc ggcctgagcc tttctgggtt
    16201 cagttcgttg agccaggccg agaacctgat gcaagtttat cagcaagcac gccttagtaa
    16261 cccggaattg cgtaagtctg ccgccgatcg tgatgctgcc tttgaaaaaa ttaatgaagc
    16321 gcgcagtcca ttactgccac agctaggttt aggtgcagat tacacctata gcaacggcta
    16381 ccgcgacgcg aacggcatca actcgaacgc gaccagtgcg tccctgcagt taactcaatc
    16441 catttttgat atgtcgaaat ggcgtgcgtt aacgctgcag gaaaaagcag cagggattca
    16501 ggacgtcaca tatcagaccg atcagcaaac cttgatcctc aacaccgcga ccgcttattt
    16561 caacgtgttg aatgctattg acgttctttc ctatacacag gcacaaaaag aagcgatcta
    16621 ccgtcaatta gatcaaacca cccaacgttt taacgtgggc ctggtagcga tcaccgacgt
    16681 gcagaacgcc cgcgcgcagt acgataccgt gctggcgaac gaagtgaccg cacgtaataa
    16741 ccttgataac gcggtagagc agctgcgcca gatcaccggt aactactatc cggaactggc
    16801 ggcgctgaat gtcgaaaact ttaaaaccga caaaccacag ccggttaacg cgctgctgaa
    16861 agaagccgaa aaacgcaacc tgtcgctgtt acaggcacgc ttgagccagg acctggcgcg
    16921 cgagcaaatt cgccaggcgc aggatggtca cttaccgacg ctggatttaa cggcttctac
    16981 cgggatttct gacacctctt atagcggttc gaaaactcgt ggtgccgctg gtacccagta
    17041 tgacgacagc aatatgggcc agaacaaagt gggcctgagc ttctcgctgc cgatttatca
    17101 gggcggaatg gttaactcgc aggtgaaaca ggcccagtac aactttgttg gtgccagcga
    17161 gcaactggaa agcgcgcatc gtagcatcgt gcaaaccgta cgttcctcct tcaacaacat
    17221 taatgcatct atcagtagca ttaacgccta caaacaagcc gtagtttccg ctcaaagctc
    17281 attagacgcg atggaagcgg gctactcggt cggtacgcgt accattgttg atgtgttgga
    17341 tgcaaccacc acgctgtaca acgctaagca agagctggca aatgcgcgtt ataactacct
    17401 gattaatcag ctgaatatta agtcagccct gggtacgttg aacgagcagg atctgctggc
    17461 actgaacaat gcgctgagca aaccggtttc cactaatccg gaaaacgttg ccccgcaaac
    17521 gccggaacag aatgctattg ctgatggtta tgcgcctgat agcccggcac ccgtcgttca
    17581 gcaaacatcc gcacgcacta ccaccagtaa cggtcataac cctttccgta actgatgacg
    17641 acgacggggc ttcggccccg tctgaacgta agacaacgta aagatacggg ttatctgccg
    17701 cattcttccc ccttctcgct tcaatttcga ccagccatcc tctattctga tgggtattta
    17761 ccactggtcc cggaagacaa aaatgaaacg gacaaaatcc atacgccacg catcgttccg
    17821 caaaaactgg agcgcacgcc atctgacacc agtcgctctc gcggttgcca ctgtttttat
    17881 gctggctagc tgtgaaaaga gtgatgaaac agtgtctctc tatcaaaatg ctgacgactg
    17941 ttcagctgca aacccaggca aaagcgccga atgtaccacc gcgtacaaca atgcgctgaa
    18001 agaagccgaa cgtactgcgc cgaaatacgc cacccgtgaa gactgtgttg ctgaatttgg
    18061 tgaaggtcag tgccagcagg caccagccca ggctggcatg gcaccagaaa accaggcgca
    18121 ggcccagcaa tccagcggga gtttctggat gccgctgatg gccggttaca tgatggggcg
    18181 tctgatgggc ggcggcgcgg gatttgcaca gcagccgctg ttctcctcga aaaacccagc
    18241 cagcccggct tacggtaaat ataccgacgc gacgggtaaa aactatggcg cagcccagcc
    18301 aggccgcacc atgaccgtac cgaagacagc catggcacca aaaccggcga ccactactac
    18361 cgttacccgt ggcggttttg gtgaatctgt tgccaaacaa agcactatgc agcgtagcgc
    18421 aaccggcacc tcttctcgtt caatgggtgg ctgataccga tggaaagagt cagtattacc
    18481 gagcgcccgg actggcgtga aaaagcccac gaatacggtt tcaattttca caccatgtac
    18541 ggcgagccgt actggtgtga agatgcttac tacaagttgc ccctcgccca ggttgaaaag
    18601 ctggaagaag tcaccgccga actgcaccag atgtgcctga aagtggtgga aaaagtgatc
    18661 gccagcgatg agctgatgac caaattccgc attccaaaac acacctggag ttttgtgcgt
    18721 cagtcatggc tgactcacca gccatcgctt tattcgcgtc ttgatctggc atgggatggc
    18781 actggcgaac ctaaactgct ggaaaataac gccgatacac caacgtcact atacgaggcg
    18841 gcgttctttc agtggatctg gctggaagat cagcttaacg ccggtaactt gccggagggc
    18901 agcgaccagt ttaacagtct gcaagaaaag ctaatcgatc gctttgtcga gttgcgtgaa
    18961 cagtatggct tccagttgct gcatctcacc tgctgtcgcg acacggtgga agatcgcgga
    19021 accattcagt atttgcagga ctgcgcgacg gaagctgaaa tcgctaccga gttcctctac
    19081 attgacgata tcgggttagg tgaaaaaagt cagttcacgg atttacagga tcaggtaatt
    19141 tccaacctgt tcaagctgta tccatgggaa tttatgttgc gtgagatgtt ctccaccaag
    19201 ctggaggatg caggcgtacg ctggctggaa ccggcgtgga agagcattat ctccaacaaa
    19261 gcgcttctac cgctactgtg ggagatgttc ccgaatcacc cgaacctgct gcccgcttat
    19321 tttgcggaag atgatcatcc gcaaatggaa aaatatgtgg ttaaaccgat cttctcccgt
    19381 gaaggcgcaa acgtgtcgat cattgagaac ggcaaaacca ttgaagcagc ggaaggtccg
    19441 tatggcgaag aagggatgat tgttcagcaa ttccatccgt taccgaaatt cggcgacagc
    19501 tatatgctga ttggtagctg gctggtgaac gatcaacccg ccggaattgg cattcgtgaa
    19561 gaccgtgcat tgatcaccca ggatatgtct cggttttatc cacatatttt tgttgagtaa
    19621 tcaatgatgc cggatggcat tcgccatccg gtaattgtta acctatctgc accgacagca
    19681 tactcaggct gcccatttct ataccatcga ccggaatggt aattggctcc tgcccatccc
    19741 acgcacctaa gacatacaac aacggcagat agtgctccgg cgttgggttc gataacgcgc
    19801 caccttcatg gtcgaggtaa ttcaccagag gatgctgctc taccgcccct tgccacgtca
    19861 gattcgcttt cacatactca ttaaacgaca tcgcccaagg atatggtgaa ctatcaccgt
    19921 gccacttcac tgtacgcagg ttatgcacca cgttgccact ggcgaccaac attattcctt
    19981 catctcgcag cgctgccagt ttgcgcccca tttcgaaatg ccaggcggca ggtttgctac
    20041 tgtcgatact caactgcacc atcgggatat cggcgtcagg atacatctta atcagcacgc
    20101 cccaggaacc gtggtcaaag cccctggctt ctttatccag cgtcaccggg accggcgcta
    20161 acagctcaac cagatgctgt gccagcacag gcgaacccgg agcaggataa tgcgtatcgt
    20221 acagcgcctg cgggaagcca ccaaagtcat gaatcgtggg cggcgtctcc atcgcggtca
    20281 ctcctgttcc acgggtaaac cagtgagccg aaaccaccac aatcgcttgc gggcgtggca
    20341 atgtcatccc caacttctgc cagctgcggg tatacaaatt atcttccagc acgttcatcg
    20401 gactaccgtg acctaaaaac aatgctggca tacgtgttga agacatgatg atatccttaa
    20461 ctaagggtgt cattttgata tcctcacaat acgcttgttc ggcggagtaa gaacccggat
    20521 aacaatgatg atgatcatca gttattttga cgatctgcct gaaggtgaag atttataagg
    20581 agttgtcgat gtcagtacct ctcattctga ccatactggc gggggcagcc acgtttattg
    20641 gcgcgtttct cggcgttctc ggacaaaaac cctcgaaccg cttactggcg ttttcgctag
    20701 gttttgcggc ggggatcatg ttgctcatct cattaatgga aatgcttcct gccgcactag
    20761 cagctgaagg aatatcgcct gtgttgggtt atggaatgtt tatcttcggt ctgcttggct
    20821 actttggcct ggaccgcatg ttgccgcatg cgcatccgca ggatttaatg caaaaatcgg
    20881 tgcagccgtt gccaaaatcg atcaagcgca cagccattct gctcactctc ggcatcagtc
    20941 tgcataactt cccggaaggg attgccacct ttgtcacggc gagcagcaac ctggagctgg
    21001 gatttggcat cgcactggcc gtcgcgttgc acaatatccc tgaaggtctg gcagtggcag
    21061 gcccggttta tgcggcaacg gggtctaaac gcaccgcgat tctgtgggcg gggatttctg
    21121 gactagcaga aattcttggt ggtgtgctgg cgtggttaat cctcggtagc atgatttccc
    21181 cggtggtcat ggcggcggtt gcaggaatta tggtggcgct ctcggttgat gaattaatgc
    21241 cgctcgccaa agagattgac cctaataata accccagcta tggcgtacta tgtggaatgt
    21301 cagtgatggg attcagttta gtgctgctac aaacggcggg aattggttaa aaacaacatc
    21361 agaagttgtc cagcacatgg acaacttctg ccagcttcac gaaagcctta ttctaccttt
    21421 tcggctgtct cttctctcgt actgtttaag tatttgttcc gcgcttcaag cagtgcgtct
    21481 ctgtcctggc gaaacgcccg acaataacgt ttcaaatgca ggaaataacc caccacaacc
    21541 agagcaatca atacaatcca gtaccaggcg ataaacatcc tttaccctta atatttaaca
    21601 atactaaaca tttagcgcat aaatttcaca tatccttttt cggatatatt catatggtcg
    21661 cataataacg gaacaattat atgattttga tcataatgaa aaagaatgcc tgatattaat
    21721 gaaattttct catagaaaga gaagcggaat taacatcttg catagcaggg caaaataaaa
    21781 accgaagcca gctacaactt cggtttcttg attaaggcag taattaagca gcggttttca
    21841 gctggcttta cgctcatgtg cctgacggta tgccaccagg tcttcaatag tcacgagcgc
    21901 catattgtgt ttattggcaa actcaatgca ctctggtgca cgcgccatcg tgccatcgtc
    21961 attagtcagc tcacacagca caccagccgg tttaaagcct gccagcgtca tcaaatcaat
    22021 agtcgcttca gtatgaccgc cacgcgtcag tacaccacct gcctgcgcgc gaagtgggaa
    22081 aacgtggccc gggcgattca gatcagaagg ttttgcgcca tcggcaatcg ctgcgcgaac
    22141 ggtcgtaata cgatcagcgg cagaaacacc ggtagtcaca ccttcagccg cttcaatggt
    22201 cacggtaaaa ccggtgccat aggcgctggt gttattttct accatcattg gcagatcaag
    22261 ttgtttacgg cgatcttcag tgatgcacag gcaaacaata ccgctaccgt ggcgaatggt
    22321 cagcgccatc tgctcaacgg tcatggtttc tgccgggaag atcatatcgc cttcgttttc
    22381 acggtcttca tcatcaagca ccattacacc gcgtccttca cgcagcgcag ccagtgcatt
    22441 ttcaacacgt tcgaaaggcg taccaaaaga ggaaagtagc gtctgattca tggtaaaaaa
    22501 aactcactaa aattatggtt accagaatca gggcagtctt aggagtggcg gcatatagcc
    22561 aaaataacgt gagcgggtcc atgcccgaca gaatcgttac tctctcccat ccggactcta
    22621 accgtcggcc ccggaattac accggatctg ctgtcctttg agttcgcacc caaagcgctc
    22681 gcgggctttc aactgagttg atttaccgcc ggtggggaat ttcgccccgc cctgagaata
    22741 agcggattca ctataacgct aatgattagc ggcagcaacg catagcttca cataattctg
    22801 gtttatgact tacccttatc gcactacaat ggtactcaac acctatcagt acagggaaac
    22861 tacaatgatt gacccgaaaa aaattgagca aatcgctcgc caagttcacg aatcaatgcc
    22921 taaaggaatc agggagttcg gggaagatgt ggagaaaaaa atccgccaaa ccctacaagc
    22981 tcagctgacg cgcctcgacc ttgtaagccg tgaagagttc gacgtccaaa cgcaagtcct
    23041 gttacggact cgtgagaaac tggcgctgct tgaacaaaga atgagcgaac tggaaaatcg
    23101 cagtactgag attaaaaagc agccagatcc agagactctc cccccaacgc tgtaaacatt
    23161 tgtctttaat gcactgtaaa ttatgaatta atcttctaat ttacagtgct ttctattacc
    23221 ttatcgctta attccattca gaatatcacc acaaaaatga atgagtgcaa ttgaaaatat
    23281 tattgttatg tattttttta agttttactt aatccatatt tagataaact aatttcataa
    23341 aacccgaaaa gtaaaatata atatttgaat gattagcaat ccttaaataa cagttactaa
    23401 tcattcattt tctacttata tttatataaa ggaatattat gtctgctttt aaaaagtcac
    23461 ttcttgttgc tggcgtagca atgattcttt ccaataacgt atttgctgac gaaggtcacg
    23521 gcattgttaa atttaaaggt gaagttatct ctgctccatg ttcaattaaa ccaggtgacg
    23581 aagacttaac tgtaaatctg ggtgaagtag cagataccgt tctgaaaagc gaccagaaat
    23641 ctttggctga gcctttcact attcacctgc aagactgcat gttgagccag ggtggaacca
    23701 cttattcaaa agcgaaggtt actttcacca cagcgaatac tatgacgggt cagactgacc
    23761 tgctgaaaaa caccaaagaa actgaaatcg gtggtgccac aggcgttggc gtacgtattc
    23821 tgaatagcca gagcggcgaa gtgactttag gtactccggt agtaattaca ttcaacaata
    23881 ctaacagcta tcaggaactg aacttcaaag ttcgtatgga atccccgggc aaagatgcta
    23941 ccccgggcaa cgtttacgct cagactgact ataagattgc ttacgagtaa tcacattagg
    24001 ccgggttcgc ccggccacat cattaacgga ttaatgataa gtggaacaga tgtataaaaa
    24061 attaaaatta accacaataa gcgaattgat taaaaatatt tattgttcat tatccgttct
    24121 catcattggt tgtgcgtcag cttatgccgt tgaattcaac aaagatttaa tcgaagccga
    24181 agatcgtgaa aacgttaacc tttcccaatt tgaaactgat ggccaattac ccgtaggtaa
    24241 atactcatta aacgctatta ttaataataa aaggacgcca atccatctgg acctgcaatg
    24301 ggtattaatt gataaccaaa ctgcagtttg tctgactcca gagcaattaa cattattagg
    24361 ctttactgat gagattattg aagaggctca gcaaaacctg atcgatggtt gttaccctat
    24421 cgaaaaagaa aaacaaatta caacttatct cgataaaggg aaaatgcaat tatccatatc
    24481 tgcacctcag gcatggttaa aatacaaaga tgcaaactgg acgcctcctg aactttggga
    24541 tcatggtatt gctggggcat ttcttgacta caatttatat gcctctcatt atgcaccaca
    24601 tcagggcgat aattcacaaa atataagttc ctatgggcag gctggggtta atcttggggc
    24661 ctggcgcctg cgtactgatt accagtacga tcagtcattt aacaatggca aaagccaggc
    24721 gaacaacctg gattttccgc gtatttattt gtttcgccca atcccagcaa ttaatgcaaa
    24781 actaactata ggtcaatacg atactgaatc ctctattttc gactctttcc atttttctgg
    24841 cgtttcgttg aaaagcgatg agaatatgtt gccgcctgat ctacgtggtt acgcaccgca
    24901 aatcacgggt gttgcacaaa cgaatgcaaa ggtcactgtc tcacagaaca accgtattat
    24961 ttatcaagaa aatgttcctc ctggcccatt tgctattact aatttattca atacattaca
    25021 ggggcaactg gacgtcaagg ttgaagaaga ggacgggcaa gtcacgcaat ggcaagttgc
    25081 atctaatagt attccttatc tgacgcgtaa agggcagatt cgctacacca ctgctatggg
    25141 taaaccgacc agcgttggtg gtgattcctt acaacaaccc ttcttctgga ctggtgaatt
    25201 ctcatggggt tggctgaaca atgtatccct gcatggtggt tcagttttaa caaaccgtga
    25261 ttatcaatct ctggctgccg gcgttggctt taaccttaac tcattgggtt cattatcttt
    25321 tgatgtcaca cgatctgata ctcagttgca taatcaggat aaagaaacgg gttatagcta
    25381 ccgcgctaac tattcaaaac gttttgaatc taccggtagc cagctcactt tcgctggtta
    25441 ccgtttctct gataaaaact ttgtgacaat gaatgaatat atcaatgaca ctaaccatta
    25501 cacgaatt
//
LOCUS       DAJVUP010000043        25416 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.043, whole genome shotgun sequence.
ACCESSION   DAJVUP010000043 DAJVUP010000000
VERSION     DAJVUP010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25416
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.043"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..183
                     /locus_tag="OQQ75_001644"
     CDS             <1..183
                     /locus_tag="OQQ75_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HCS1976016.1"
                     /translation="ACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPD
                     IGRQLSPDAWDDVSQE"
     gene            253..1029
                     /gene="yaaA"
                     /locus_tag="OQQ75_001645"
     CDS             253..1029
                     /gene="yaaA"
                     /locus_tag="OQQ75_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HCS1976017.1"
                     /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP
                     QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD
                     FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA
                     AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF
                     IIENRLTKPEQLTGFNSEGYFFDEASSSNGELVFKRYEQR"
     gene            complement(1182..1478)
                     /locus_tag="OQQ75_001646"
     CDS             complement(1182..1478)
                     /locus_tag="OQQ75_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS1976018.1"
                     /translation="MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGNRDNRGY
                     YWDGGHWRDHGWWKQHYEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR"
     gene            complement(1692..2978)
                     /gene="thrC"
                     /locus_tag="OQQ75_001647"
     CDS             complement(1692..2978)
                     /gene="thrC"
                     /locus_tag="OQQ75_001647"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HCS1976019.1"
                     /translation="MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID
                     EMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP
                     TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG
                     KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR
                     LLAQICYYFEAVAQLPQEARNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN
                     DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE
                     TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE
                     TLDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ"
     gene            complement(2979..3911)
                     /gene="thrB"
                     /locus_tag="OQQ75_001648"
     CDS             complement(2979..3911)
                     /gene="thrB"
                     /locus_tag="OQQ75_001648"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HCS1976020.1"
                     /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETF
                     SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS
                     VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI
                     ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
                     PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTA
                     QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN"
     gene            complement(3913..6375)
                     /gene="thrA"
                     /locus_tag="OQQ75_001649"
     CDS             complement(3913..6375)
                     /gene="thrA"
                     /locus_tag="OQQ75_001649"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HCS1976021.1"
                     /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT
                     NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK
                     HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY
                     LESTVDIAESTRRIAASRIPADHMVLMAGFTSGNEKGELVVLGRNGSDYSAAVLAACL
                     RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
                     QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR
                     VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV
                     TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
                     GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA
                     LLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
                     FLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLN
                     AGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK
                     LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG
                     KVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
                     NDVTAAGVFADLLRTLSWKLGV"
     misc_feature    complement(6400..6519)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00506"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Thr leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00506"
     gene            complement(6455..6520)
                     /gene="thrL"
                     /locus_tag="OQQ75_001650"
     CDS             complement(6455..6520)
                     /gene="thrL"
                     /locus_tag="OQQ75_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thr operon leader peptide"
                     /protein_id="HCS1976022.1"
                     /translation="MKRISTTITTTITITTGNGAG"
     gene            complement(6734..7420)
                     /locus_tag="OQQ75_001651"
     CDS             complement(6734..7420)
                     /locus_tag="OQQ75_001651"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1976023.1"
                     /translation="MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPAT
                     RWVAHGSGDIIDNIKVFPTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKS
                     SWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ
                     QPTKSDTTADQHQLQALRERVMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRL
                     LHDIEKNITK"
     gene            complement(7820..7960)
                     /locus_tag="OQQ75_001652"
     CDS             complement(7820..7960)
                     /locus_tag="OQQ75_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976024.1"
                     /translation="MTKVRNCVLDALSINVNNIISLVVGTFPQDPTVSKTAVILTILT
                     AT"
     gene            8056..8772
                     /gene="arcA"
                     /locus_tag="OQQ75_001653"
     CDS             8056..8772
                     /gene="arcA"
                     /locus_tag="OQQ75_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003621071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HCS1976025.1"
                     /translation="MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS
                     EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK
                     LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT
                     PEIIATIHGEGYRFCGDLED"
     gene            complement(8832..10184)
                     /gene="creD"
                     /locus_tag="OQQ75_001654"
     CDS             complement(8832..10184)
                     /gene="creD"
                     /locus_tag="OQQ75_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HCS1976026.1"
                     /translation="MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDA
                     IRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEE
                     RKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPE
                     VNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNS
                     EMPLTSNWPHPSFLGDFLPAKREVSESGFQAQWQSSWFANNLGERFASGNDTGWENFP
                     AFSVAVTTPADQYQLTDWATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLV
                     MFYLLLLALSEHIGFTVAWIIASLIGALMNGIYLQAVLKGWRNSMLFTLALLLLDGVM
                     WGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTMDDQLRIWK
                     "
     gene            complement(10242..11666)
                     /gene="creC"
                     /locus_tag="OQQ75_001655"
     CDS             complement(10242..11666)
                     /gene="creC"
                     /locus_tag="OQQ75_001655"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HCS1976027.1"
                     /translation="MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLID
                     TATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDSQG
                     KVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRL
                     IGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYAD
                     SVTDNKPVPLPELGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRG
                     AAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTVVDVAALF
                     RRVSEARTVQLAEKNITLHVMPTEVNVAAEPALLEQALGNLLDNAIDFTPESGRITLS
                     AEVDQEHVALKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN
                     GEVTLRNVQEGGVLASLRLHRHFT"
     gene            complement(11666..12355)
                     /gene="creB"
                     /locus_tag="OQQ75_001656"
     CDS             complement(11666..12355)
                     /gene="creB"
                     /locus_tag="OQQ75_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HCS1976028.1"
                     /translation="MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR
                     QLVPDVMILDVGLPDISGFELCSQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYV
                     AKPFSPREVCTRVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEF
                     LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLHAKLRAINPDLSPINT
                     HRGMGYSLRGL"
     gene            complement(12368..12841)
                     /gene="creA"
                     /locus_tag="OQQ75_001657"
     CDS             complement(12368..12841)
                     /gene="creA"
                     /locus_tag="OQQ75_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CreA"
                     /protein_id="HCS1976029.1"
                     /translation="MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEA
                     FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGE
                     VVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ"
     gene            13052..13921
                     /gene="robA"
                     /locus_tag="OQQ75_001658"
     CDS             13052..13921
                     /gene="robA"
                     /locus_tag="OQQ75_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     RobA"
                     /protein_id="HCS1976030.1"
                     /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD
                     VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL
                     YRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR
                     YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM
                     LQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP
                     INLRCELLIPIRR"
     gene            complement(13918..14565)
                     /gene="gpmB"
                     /locus_tag="OQQ75_001659"
     CDS             complement(13918..14565)
                     /gene="gpmB"
                     /locus_tag="OQQ75_001659"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase GpmB"
                     /protein_id="HCS1976031.1"
                     /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAK
                     ELGITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEEN
                     WRRQLVNGTVDGRIPEGESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVST
                     ILGLPAWAARRLRLRNCSISRVDYQESLWLASGWVVETAGDISHLDAPALDELQR"
     gene            14617..15138
                     /gene="yjjX"
                     /locus_tag="OQQ75_001660"
     CDS             14617..15138
                     /gene="yjjX"
                     /locus_tag="OQQ75_001660"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/xanthosine triphosphatase"
                     /protein_id="HCS1976032.1"
                     /translation="MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQ
                     PFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENTSQRGEARSA
                     TLPLPAVILQKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVIL
                     ALSPFHNAVYQAL"
     gene            complement(15223..15549)
                     /gene="trpR"
                     /locus_tag="OQQ75_001661"
     CDS             complement(15223..15549)
                     /gene="trpR"
                     /locus_tag="OQQ75_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HCS1976033.1"
                     /translation="MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLT
                     PDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE
                     VLLKSD"
     gene            complement(15639..17576)
                     /gene="sltY"
                     /locus_tag="OQQ75_001662"
     CDS             complement(15639..17576)
                     /gene="sltY"
                     /locus_tag="OQQ75_001662"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HCS1976034.1"
                     /translation="MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAW
                     DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQ
                     SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK
                     SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI
                     ISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNED
                     QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW
                     LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYE
                     LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYA
                     FNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAW
                     NPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQ
                     QFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAY
                     YRYFMGDKPTLMSATEWGRRY"
     gene            17787..19454
                     /gene="ettA"
                     /locus_tag="OQQ75_001663"
     CDS             17787..19454
                     /gene="ettA"
                     /locus_tag="OQQ75_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017145039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HCS1976035.1"
                     /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG
                     KSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALK
                     RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKI
                     ANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD
                     RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWV
                     RQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYG
                     DRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVD
                     QFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER
                     GRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA
                     THILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK"
     gene            complement(19761..20993)
                     /gene="nadR"
                     /locus_tag="OQQ75_001664"
     CDS             complement(19761..20993)
                     /gene="nadR"
                     /locus_tag="OQQ75_001664"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HCS1976036.1"
                     /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS
                     AQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDD
                     TRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG
                     IKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIDTVLVDPKRTFMSISGAQIRENPFRY
                     WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE
                     IALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI
                     DEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEDDYD
                     SRFLRCVELVREMMGEQR"
     gene            complement(21014..22396)
                     /gene="radA"
                     /locus_tag="OQQ75_001665"
     CDS             complement(21014..22396)
                     /gene="radA"
                     /locus_tag="OQQ75_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HCS1976037.1"
                     /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT
                     VARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG
                     NPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
                     QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV
                     GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG
                     LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE
                     QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ
                     DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL
                     SDALSVFDDL"
     gene            complement(22445..23413)
                     /gene="serB"
                     /locus_tag="OQQ75_001666"
     CDS             complement(22445..23413)
                     /gene="serB"
                     /locus_tag="OQQ75_001666"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="HCS1976038.1"
                     /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG
                     RGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLG
                     KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRS
                     RVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKL
                     RLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGAND
                     LPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK"
     gene            23519..24070
                     /locus_tag="OQQ75_001667"
     CDS             23519..24070
                     /locus_tag="OQQ75_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976039.1"
                     /translation="MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQ
                     LEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIAR
                     SGESVEVRDRLALDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRW
                     QQSPFLLTASKPVPEEEESEKKE"
     gene            24098..25114
                     /gene="lplA"
                     /locus_tag="OQQ75_001668"
     CDS             24098..25114
                     /gene="lplA"
                     /locus_tag="OQQ75_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase LplA"
                     /protein_id="HCS1976040.1"
                     /translation="MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV
                     VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST
                     SIVLNALNALGVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLS
                     RLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITKAFFAHYGERVEA
                     EIISPDKTPDLPNFAEIFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHI
                     TRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIA
                     GAVR"
     gene            25146..25295
                     /locus_tag="OQQ75_001669"
     CDS             25146..25295
                     /locus_tag="OQQ75_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976041.1"
                     /translation="MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGIS
                     INSLK"
BASE COUNT         6106 a         7004 c         6309 g         5997 t
ORIGIN      
        1 gcctgcatgg ctattaccaa tttgaccgcc attttactgc tctcgcctgt ggttcatacc
       61 attgccagtg attatctacg ccagcgtaaa ctcggcgtgc gcccggtgtt tgatccgttg
      121 cgttatccgg atatcggtcg ccagctttct ccggacgcgt gggatgatgt ttcgcaggag
      181 taatcacaac tatcgatcaa ctcattctct ttttttgcta aagtcggcat aaatttcctg
      241 caaggactgg atatgctgat tcttatttca cctgcgaaaa cgcttgatta ccaaagcccg
      301 ttgaccacca cgcgctatac gctgccggag ctgttagaca attcccagca gttgatccat
      361 gaagcgcgga aactgacgcc tccgcagatt agcacgctga tgcgcatcag cgacaaactg
      421 gcgggtatca acgccgctcg ctttcatgac tggcagccag atttcacgcc ggcgaatgcc
      481 cgccaggcga ttctggcgtt taaaggtgat gtctacaccg gcttgcaggc cgaaaccttc
      541 agcgaagacg atttcgattt tgcccaacag catttgcgaa tgctttccgg cttgtatggc
      601 gtactgcgcc cgctcgattt aatgcagcct tatcgtctgg aaatggggat ccgtcttgag
      661 aatgcccgag ggaaagatct gtatcaattc tggggagata tcatcaccaa caagctgaac
      721 gaggcgctcg cagcacaagg cgataatgtg gtgattaatc tggcgtcaga tgagtatttt
      781 aaatcggtga agccgaagaa attgaatgcc gagattatca agccggtgtt cctcgatgag
      841 aagaacggca aatttaagat catcagcttc tacgctaaga aagcacgcgg tctgatgagt
      901 cgtttcatta ttgaaaatcg gctgaccaaa ccagagcaac tgactggttt taatagcgaa
      961 ggttacttct ttgatgaagc ttcctccagc aatggcgaac tggtgtttaa acgctacgag
     1021 cagcgttaag tttgcagtca atgccggatg cggcgtgaac gccttatccg gcctacaaaa
     1081 gcatgcagat tcaatatatt gcagaattca cgtaggcctg ataagacgcg ccagcgtcgc
     1141 atcaggcgct gaatgccgga ttgttacccg gcatttgtca tttagcggtg atgtttgcct
     1201 ggaccatgac cgccgtgatg atcatgagga gctttcttat ggtggcgcgg cggtggcggc
     1261 ggtccgtgtg ggtgccagcg attgcctcgc cattcataat gttgtttcca ccagccgtgg
     1321 tcgcgccagt gacctccatc ccagtaatag ccacgattat cacgattgcc tatctgtaat
     1381 tttactgacg ggactaacgt aatttccgca gcctgtgctg ccatgggagc gaccagaacc
     1441 agggaaagtg cgagtacgat agattgcatc tttttcacag gttactcctt ttatcattgc
     1501 ccgttatggg tcgatatccg gagattacgc gatgagaacg acggttgtta ttctccgcaa
     1561 tcctaatctc taagttaccg catttattga gaatatctcc tttttccctg tcgtttttct
     1621 ccataatttc ttcataaaaa agccgggctg cataaaagca aacccggcct gattgagata
     1681 atgaatagat tttactgatg attcatcatc aatttacgca acgcagcaaa atcggcgggc
     1741 agattatgtg aaagcaaggg taaatcagca cgttctgcca gctcttttgg cagatccaac
     1801 gtttcaccga gaatcgcttc cacgctctct ttaaatttcg ccggatgcgc ggtgccgagg
     1861 aacaagccat attcgcctgg attcaactgg tcacgcagcg cacgatacgc tacggcagcg
     1921 tgcggctccg aggtgtagcc cagttctttt aactcacgca ttgtctgttg cgtggtttca
     1981 tcatccacgg ctgcataacc cagctctttc agttgccaga ttttgcggcg gaacaactct
     2041 tccacacgcg gccagttgtt cggctgactc acgtccatcg cgttggataa cgtcgcctga
     2101 gtcgctttgg gtgaccactg accgtcgtgc aggaaacgtg gcacggtatc gttcacgttg
     2161 gtcgcagcaa taaaacgttt caccggcaga ccgagtgact tcgccagcag acccgccgtc
     2221 aaatcgccga agtttccgct tggcaccgag acaaccagct ggttgcgcgc ttcctgcggc
     2281 agctgcgcaa ctgcttcaaa gtagtagcaa atctgcgcca gcaaacggct gatgttaatc
     2341 gagttagctg agtttaaccc cagcgccact ttcagctctt catcatcaaa cgcctgcttc
     2401 accagcgcct gacaggcatc gaaatcgccg tcgatggcaa cagtttcgat attgccgccc
     2461 aatgtacaga acagtttttc ttgcagtgga ctgattttgc ctcgtggata gaggataacc
     2521 actttcacat tcggtaaacc gtagaaagca tgagccactg ccgctccggt atcaccggag
     2581 gtcgcggtca gaatggtcac tggcttatcg cccgcaatat gggtcagcat ttgtgccata
     2641 aagcgaccgc cgaaatcttt aaatgccagc gttggcccgt ggaacaattc cagacaaccg
     2701 acatcgcttt caacattggc gaccggagcc gggaaggcaa acgccgcgcg cacgcgctct
     2761 tccaggattt cctgcgggat ttcatcacca ataaacgccg agaggatctt cgcactgcgg
     2821 gtgacaaaat ccagcttcag catctcatca atttcagtca ggctgaattc cggcaggtcg
     2881 tgcggaaaaa acagcccctg atttttgccc aacccctggg ttacggcttg cgcaaagctg
     2941 acctgctcat tgtgatcttt cagattgtag agtttcattt agttttccag tactcgtgcg
     3001 cccgccgtat ccagccggca aatatgaaca aaaccttcct gattttgcag gtagttctta
     3061 cccaaccagt cggcaacgcg ctgggcggta tccggcttgt cacacagagc gaacaaggtc
     3121 gggccggagc cggagatacc gctcgctacc gcgccgattt ccgcaaccgc ctgccgcgcc
     3181 tgccggaagc caggcagtaa ccgttcacgg tagggttcag cgataacatc tttcatcagc
     3241 ttcgcggcaa gctcaggctg acgggaatag caggcgtgaa tgaagccagc cagatgtcgc
     3301 ccgtgcgcaa tgcaatcctg gcggcgatac tgcgccggta aaatagccct ggcttctgcc
     3361 gttgagactt taatccccgg atacgccagc acccacagcc actcatcaaa ccctggcact
     3421 tgctggctga tgatgtcgtt ttcttcgatc atcaactgca taccaccaag aaaacacggt
     3481 gccacgttgt cgtaatgaat gctgccggag attcgtcctt ccagctcgcc catcaaagcc
     3541 agcaaacgag tgtcattaag cggcttgcca cagtgttcat tcatcgccat cagcgccgcg
     3601 accaccgaac aggcgctgga gcctaagccc gaaccgattg gcatattctt ttccagagtc
     3661 atcgccactg gaatttgctt gccaagctcc tggcaaaaac gctcccagca ctgataaacg
     3721 atattttccc gtggttctga cggcagctta tcggcaaagc gtccgaggtt gttgagactg
     3781 aatgtctctg ccgcctcaac cgtgactaca tctccgagca atgcaccatc aacaggtgtc
     3841 accgccgccc cgagcacatc aaacccgacg ctcatattgg cactggaagc cggggcataa
     3901 actttaacca tgtcagactc ctaacttcca tgagagggta cgtagcagat cggcaaagac
     3961 accggcagct gtaacgtcat tgcccgcacc atatccgcgc agcaccaacg gcagcggctg
     4021 ataatagtgg ctataaaagg ccagggcgtt ttcgccattt ttcactttga acagcggatc
     4081 attaccatcc acttcggcaa tcttcacgcg gcaggcacca tcttcatcaa tattgccaac
     4141 atagcgcaaa acttttcctt catcacgggc cttcgccacg cgcgcggcaa agagatcgtc
     4201 gagctgtgac agattcgcca taaaagcggc aacatcaccc tcagcgttaa actctgcggg
     4261 cagcacaggt tcaatttcaa tatccgccag ctccagttca cgtcccgttt cacgagcgag
     4321 aatcaatagc ttacgcgcta catccatacc agaaagatca tctcgcggat ccggttcggt
     4381 ataacccatt tcccgcgcca gagtagtcgc ctcggagaaa ctcatgcctt cgtctaactt
     4441 gccgaagata taagaaagcg aacctgaaag aatgccggag aacttcatca attcatcacc
     4501 agcattgagc agattttgca ggttctcaat aaccggtaat ccagccccaa cgttggtgtc
     4561 atagaggaat ttacgccgcg atttttccgc cgcatgacgc aacagatggt agtaatccat
     4621 cgacgaggtg ttggcctttt tgttcggcgt gacaacgtgg aaaccttcgc gcaagaagtc
     4681 ggcatattga tccgccactg cctggctgga ggtgcagtca acaatgaccg ggttcagcag
     4741 atgatattct ttcacgaggc gaattaagcg cccgagatta aacggctctt tggcttgcgc
     4801 cagttcttcc tgccagtttt ccagatttag gccatgcaca ttggtgagca gtgccttcga
     4861 gttggcaaca ccgcagacac gtaagtcgat atgtttattc ttcagccagc tttgttgacg
     4921 cttcagttgc tccagcagcg caccgccaac gccaccgacg ccaatcacaa acacttcgat
     4981 aacctgatcg gtattgaaca gcatctgatg agtaacgcgc acgccagtgg tcgcatcatc
     5041 gttatttacc acgacagaga ttgagcgttc agaagatccc tgagcaatgg cgacaatgtt
     5101 gatattggcg cgggccagcg cggcaaagaa tttcgccgag atcccacgca aggtgcgcat
     5161 accatcacct accaccgaga taatggccag ccgttccgtc accgccagcg gctccagtaa
     5221 gccttctttc agttccaggt agaactcttc ctgcattgcc cgttcagctc gcacacagtc
     5281 gctttgtgga acgcagaaac tgatactgta ttcggaagat gattgcgtaa tcagcaccac
     5341 ggaaatacgg gcgcgtgaca ttgcagcaaa gacgcgcgcc gccatgccga ccattccttt
     5401 catccccgga ccagaaacgc tgaacattgc catattattc agattggaaa tgcctttgac
     5461 cggtaattcg tcttcatcac ggctggcacc aatgagcgta cctggtgctt gaggatttcc
     5521 ggtattttta atcaggcaag ggatctggaa ctgggcgatg ggggtaatgg tgcgggggtg
     5581 aagaacttta gcgccgaagt aggaaagctc catcgcttcc tggtaggaca tcgacttcaa
     5641 caacctcgca tcgggcacct gacgcgggtc gcaggtatag accccgtcaa cgtccgtcca
     5701 aatctcgcaa caatcggcgc gtaaacaggc agccagcacc gccgcggagt agtcggaacc
     5761 gttacgtcca agtaccacca gttcgccttt ttcattaccg gaggtgaaac ctgccatcaa
     5821 caccatgtga tcagccggaa tgcggcttgc cgcaatacgg cgggtggact cagcaatatc
     5881 gacggtagat tcgaggtaat gccccactgc cagcagtttt tcgaccggat cgataacggt
     5941 aacgttgtga ccacgagctt ctaacacgcc ggccataatg gcgatcgaca ttttctcgcc
     6001 acggcaaatc agcgcagcgt tgatgctatc cgggcactgc cccaacaaac taatgccatg
     6061 caggacatgt tttatttggg caaattcctg atcgacgaaa gttttcaatt gcgccagcgg
     6121 gaaccccggc tgggcggcgg cgagtcccgt caaaagttcg gcaaaaatac gttcggcatc
     6181 gctgatattg ggtaaagcat cctggccgct aatggttttt tcaatcatcg ccaccaggtg
     6241 gttggtgatt ttggcggggg cagagaggac ggtggccacc tgcccctgcc tggcattgct
     6301 ttccagaata tcggcaacac gcagaaaacg ttctgcattt gccactgatg taccgccgaa
     6361 cttcaacact cgcatggttg ttacctcgtt acctttggtc gaaaaaaagc ccgcactgtc
     6421 aggtgcgggc ttttttctgt gtttcctgta cgcgtcagcc cgcaccgtta cctgtggtaa
     6481 tggtgatggt ggtggtaatg gtggtgctaa tgcgtttcat ggatattgtg tactctgtaa
     6541 tttttatctg tctgtgcgct atgcctatat tggttaaagt atttagtgac ctaagtcaat
     6601 aaaattttaa tttactcacg gcaggtaacc agttcagaaa ctgctatcag acactctttt
     6661 tttaatccac acagagacat attgcccgtt gcagtcagaa tgaaaagctg aaaaatactt
     6721 actaaggcgt tttttatttg gtgatatttt tttcaatatc atgcagcaaa cggtgcaaca
     6781 ttgccgtgtc tcgttgctct aaaagcccca ggcgttgttg taaccagtcg accagtttta
     6841 tgtcatctgc cactgccaga gtcgtcagca atgccatgac tcgttcgcgt aaagcttgca
     6901 gttgatgttg gtctgccgtt gtgtcacttt tcgtcggttg ttgtattaat gttgctaatt
     6961 gatagcaata gaccatcacc gcctgcccca gattgagcga aggataatcc gccaccatcg
     7021 gcacaccagt aagaacgtca gccaacgcta actcttcgtt agtcagcccg gaatcttcgc
     7081 gaccaaacac cagcgcggca tggctcatcc atgaagattt ttcctctaac agcagcacca
     7141 gttctactgg cgtggcgtag taatgatatt tcgcccgact gcgcgcagtg gtggcgacag
     7201 tgaaatcgac atcgtgtaac gattcaacca gtgtcgggaa aactttaata ttatcaataa
     7261 tatcaccaga tccatgtgcg acccagcgag tggctggctc cagatgtgcc tgactatcga
     7321 caatccgcag ttcgctaaaa cccatcgttt tcattgcccg cgccgctgcc ccaatatttt
     7381 ctgctctggc gggtgcgacc agaataatcg ttatacgcat attgccactc ttcttgacca
     7441 aatgaccgcg aacagggtga tcactgtcaa cttattacac ggtgcgaatt tacaaatcct
     7501 taacgtaagt cgcagaaaaa gccctttact tatcttaagt aaggctaaac tatttcctga
     7561 ctgtactaac ggttgaattg ttaaaaaatg ctacatatcc ttctgtttac ttaggataat
     7621 tttataaaaa ataaatctcg acaattggat tcaccacgtt tattagttgt atgatgcaac
     7681 tagttggatt attaaaataa tgtgacgaaa gctagcattt agatacgatg atttcatcaa
     7741 actgttaacg tgctacaatt gaacttgata tatgtcaacg aagcgtagtt ttattgggtg
     7801 tccggcccct cttagcctgt tatgttgctg ttaaaatggt taggatgaca gccgtttttg
     7861 acactgtcgg gtcctgaggg aaagtaccca cgaccaagct aatgatgttg ttgacgttga
     7921 tggaaagtgc atcaagaacg caattacgta ctttagtcat gttacgccga tcatgttaat
     7981 ttgcagcatg catcaggcag gtcagggact tttgtacttc ctgtttcgat ttagttggca
     8041 atttaggtag caaacatgca gaccccgcac attcttatcg ttgaagacga gttggtaaca
     8101 cgcaacacgt tgaaaagtat tttcgaagcg gaaggctatg atgttttcga agcgacagat
     8161 ggcgcggaaa tgcatcagat cctctctgaa tatgacatca acctggtgat catggatatc
     8221 aatctgccgg gtaagaacgg tcttctgtta gcgcgtgaac tgcgcgagca ggcgaatgtt
     8281 gcgttgatgt tcctgactgg ccgtgacaac gaagtcgata aaattctcgg cctcgaaatc
     8341 ggtgcagatg actacatcac caaaccgttc aacccgcgtg aactgacgat tcgtgcacgc
     8401 aacctgctgt cccgtaccat gaatctgggt actgtcagcg aagaacgtcg tagcgttgaa
     8461 agctacaagt tcaatggttg ggaactggac atcaacagcc gttcgttgat cggccctgat
     8521 ggcgagcagt acaagctgcc gcgcagcgag ttccgcgcca tgcttcactt ctgtgaaaac
     8581 ccaggcaaaa ttcagtctcg tgctgaactg ctgaagaaaa tgaccggccg tgagctgaaa
     8641 ccacacgacc gtactgtaga cgtgacgatc cgccgtattc gtaaacattt cgaatctacg
     8701 ccggatacgc cggaaatcat cgccaccatc cacggtgaag gttatcgctt ctgtggtgat
     8761 ctggaagatt aatcggcttt accaccgtca aaaaaaacgg cgctttttag cgccgttttt
     8821 atttttcaac cttatttcca gatacgtaat tgatcgtcca ttgtaacttc tttactggct
     8881 ttcattttcg gcagtgaaaa cgcataccag tcgatattac gagtcacaaa catcatgccg
     8941 gccagcgcca ccaccagcac actggttccc aacaacagcg cgctatcggc agagttgagc
     9001 agtccccaca tcacaccatc cagcaacaac agcgcgaggg taaacaacat gctgttgcgc
     9061 cagcctttca ataccgcctg caaataaata ccgttcatta acgccccaat cagactggcg
     9121 attatccatg ccacggtaaa accgatatgt tcagaaagcg ccagcaagag caaataaaac
     9181 atcaccaatg aaagccccac cagcaaatat tgcattgggt gtaaacgttg cgcggtgagc
     9241 gtttcaaaaa caaagaacgc cataaaagtc agtgcaatca gcagaatggc gtacttagtc
     9301 gcccagtccg ttaattggta ttgatcggct ggcgtcgtca ctgcgacgct aaacgcgggg
     9361 aagttttccc agccggtatc attgcctgaa gcaaaacgct caccgagatt attagcaaac
     9421 cagctgcttt gccattgcgc ctgaaaacct gactcgctaa cttcccgttt ggctggtaga
     9481 aaatcaccta aaaaactggg atgcggccag ttgctggtta agggcatttc gctattacgc
     9541 ccggcaggca ccacagaaag atcgccggta ccgcttaaat tcagtgccat attcagctgc
     9601 aggttctgct tccgccagtc cccttcgggt aaagggatat gcacgccctg cccgccttgc
     9661 tctaacccgg taccgggttc aatggtcagt gccgttccgt taacttcagg cgctttcacc
     9721 acaccaatac cacgcgcatc cccgacgcta atcacaataa agggcttgcc taagatgata
     9781 tttggcgcgt tgagctcgct aagacgcgaa acatcgaaat cggcttttag cgttaaatca
     9841 ctgtgccaga cctgaccggt ataaatccct atcttgcgtt cttccacgtt ctgattgcca
     9901 tcaaccatca atgactcagg taaccaaaaa tggataaaac ttcgtttccg ctccacggtt
     9961 ttatcctctt cctgcaccgt ataaagctcg gtcacaggaa tagcgataag cggcccaacg
    10021 agtttttgcg gcccgctggt actttggcga atcgcatctt ccacatcgct acggtaatcg
    10081 gcacgttcga caatcacttg ccgaatcagc attatcggaa tcaacaacag caatactgca
    10141 ccaaacaagg tggtcatttt ccagaacagg ggggatttca acatagtctt ctcctttgca
    10201 atggcagcag gatacgaagg ctatgtggga agaatttgaa gctatgtgaa gtgacggtga
    10261 agtcgaagcg aggccagcac gccaccttcc tgcacgttgc gcagcgtgac ttcgccgtta
    10321 aacaaacggg cgacctcact gacgaacgcc aaccccagac cgctgctttt ttgcccattt
    10381 gcacgcggca aagagtaaaa gcgttcaaaa atacgtgaca gcgcgtagtc aggaatacca
    10441 ctaccggtat ccagcacctt aagggcgacg tgttcctgat ccacttcggc gcttagcgtt
    10501 atgcgaccgc tctcgggggt aaaatcgatg gcgttatcca gtaaattccc cagcgcctgc
    10561 tccagtaacg ccggttcagc agcaacatta acctcagtgg gcataacatg tagagtgatg
    10621 tttttttctg ccaactgcac ggtgcgcgct tcgctgacgc ggcgaaataa tgccgccaca
    10681 tcaacaacag tcagaacgac ttcctgacga ttctccagtc ttgcctggcg tagtaacgtt
    10741 tctaccaatg cctgcatacg cgcattttgc gtcagaatgt tgtcggtaaa acgagccacc
    10801 acttccggtg gcggaccttc gcgtaaaatt tccgccgcgc cacgaatcgc cgccagtggg
    10861 ctttttagct catgggttaa cgcataaaca tactgctcaa tatagttttt cccttccagc
    10921 ttcacgcgca tactttccag cgcctgcgca agcttacgca actcgctact gccgagttca
    10981 ggaagaggaa cgggcttatt gtcagtgacg gaatcggcat agcgagtgag ccgggcaatg
    11041 gagcggttga tccaccaaac catgcctgcg ccaatcacca gtgcaatccc cagcaaaatg
    11101 gcgctggccc ataaaattcg ccgctcgcta cgcttaatga ccggagccat cgccgcgttc
    11161 ggtttgccta cgctcaaaac gccaataagc cgcgagccgt ccataatcgg cgcggcaaca
    11221 tacatcaccg aactttcggg atcggcagga ttttgcaacg tgctgcgcgc accatactga
    11281 ccacgcaacg ttagccagac gtcattccag cgcgaataat cctgcccaac ggctttattt
    11341 gccgaatcga acaatacttt accctgcgaa tcggtcatat agacatgata ttcattgcgc
    11401 actttgttaa tgccaccgat attggcgcga aacggacgat gttgtagctg attaaacgcc
    11461 tgcgccagtt gcccatgcgt tgggtcccca gagagcaaat cgggacgcgc cagctccgcc
    11521 agcaacgttg cggtgtcgat caacgtcccc tccgttgctc ttcgcacgcc cggtttaact
    11581 tctttgacaa aaatagccag tacgaaccag gccgccaccg ccaccagtaa aaaatagccc
    11641 agcagcaacc gcatgccgat acgcattaca ggcccctcag gctatatccc atgccgcgat
    11701 gagtattaat cggtgaaaga tcggggttga tggcacgcag cttggcatgc aacgttttaa
    11761 tgtgggtatc aacggtgcga tcgtaggtgt cctgcgcatc ttcccacacg ctatccatca
    11821 gttgctggcg ggaccagacg cggcctggcg acttgagtaa cgtcttcagc aataaaaact
    11881 cataccgcgt cagcgttaat ggcgtgtcaa accagctgat ctgcgccgcg ggttcattca
    11941 attcaaaatg accaatacgg atgacgggag acggcgacga gaacttcttc acccgacgca
    12001 gtaaggtgcg caccctggtg cacacttcgc ggggtgaaaa cggtttagcc acatagtcgt
    12061 cagcgccaat ttccagccca agcaggcgat cgacctcttc acttcgggcc gtcaggaaca
    12121 gtacaggtaa cgccggatgg agcgccagta actggctgca caattcaaag ccgctgatat
    12181 caggcaaacc aacgtcgaga atcatgacgt cgggaaccag ctggcgagct ttatccagca
    12241 ccggcaagcc tcgctcaaag acctcgacgg caaaaccttc ctgctgcaac atgtagacca
    12301 gcgtgtcggc tatcccttgc tcatcttcca ctaaccagac cgtttcccgt tgtataaatc
    12361 gcctctgtta ttgccgccac ggcatgacag gaaccgcgct aatcgcgttt ttcggcgaac
    12421 cttctacaac tttgtcggag taagccagat aagcgagcgc gttgcgtttg gcgtcataaa
    12481 agcgcacgac ctgtaacgac ttaaagacca gggacgtgcg ttttttgaat actacctcgc
    12541 cctgagcttt gccgttttta atacgatccg acagttcaat cggcccgact tgctgacaag
    12601 aaatagccgc atcggaggta tcttccgcca gacccaatcc ccctttaata ccacctgttt
    12661 tcgcccggct cacataacag gtgacatttt tcacatcggg atcgtcaaag gcttccacaa
    12721 caattttgtg atccgggccg atcattttaa atacggtgtc gaccgaacca atctcttctg
    12781 catgagccaa tggccccagc attatcaggc ttaaagacag gatcaaatgc ttgtatttca
    12841 tattgttacc atttttatct attacacgag caattagttc gtcacggtaa ataacatatt
    12901 gattaagaac aaaatctcaa ttcttttatt tccgtcaagc cctaaaacat actctactaa
    12961 gaaaaaaaca ctgaatgcta aaacagcaaa aaatgctatt atccaattac ctgatgtcag
    13021 gtgctcgttg ttgaaaggat gaggatattt tatggatcag gccggcatta ttcgcgacct
    13081 tttaatctgg ctggaaggtc atctggatca gcccctgtcg ctcgacaatg tagcggcgaa
    13141 agcaggttat tccaagtggc acttacagag aatgtttaaa gatgtcactg gccatgctat
    13201 tggcgcgtat attcgtgctc gtcgtttgtc gaaatcggcg gtcgcactac gcctgactgc
    13261 gcgtccgatt ctggacatcg cgctgcaata ccgcttcgac tctcaacaga catttacccg
    13321 cgcattcaag aagcagtttg cccagactcc tgcactttac cgccgttctc ctgaatggag
    13381 cgcctttggt attcgcccgc cgctacgtct gggtgaattc acaatgccag agcacaaatt
    13441 tgtcaccctg gaagatacgc cgctgattgg tgttacccag agctactcct gttcgctgga
    13501 gcaaatctct gatttccgcc atgaaatgcg ttatcagttc tggcacgatt ttctcggcaa
    13561 cgcgccgacc attccgccag tgctctacgg cctgaatgaa acgcgtccga gtcaggataa
    13621 agacgacgaa caagaggtat tctataccac cgcgttagcc caggatcagg cagatggcta
    13681 tgtactgacg gggcatccgg tgatgctgca gggcggcgaa tatgtgatgt ttacctatga
    13741 aggtctggga accggcgtgc aggagtttat cctgacggta tacggaacgt gcatgccaat
    13801 gctcaacctg acgcgccgta aaggtcagga tattgagcga tactacccgg cagaagacgc
    13861 caaagcggga gatcgcccaa ttaatctgcg ctgtgaactg ctgattccta tccgccgtta
    13921 acgctgcagc tcatctaatg caggggcgtc cagatgcgag atgtcccctg cggtttcaac
    13981 gacccagcca gacgccagcc acaggctttc ctgataatcc acgcgcgaaa tagaacagtt
    14041 acgcagacgt aagcggcgcg ctgcccatgc tggtaatccg agaatcgtac tcaccagaca
    14101 tcccagtgca ataccatggc tcaccagcag cggtcggctt ccctgcggta agtcccggca
    14161 agattccagt gccgcattga cgcgatcgct gagctcctgc attgactcgc cttcaggaat
    14221 acgcccgtca acggtgccat tgaccagctg ccgacgccag ttctcttctt cttcggtcag
    14281 agaatcgata tgtctttttt ccagcacacc catgtttaat tcacgcaggc gagaatcaaa
    14341 gatgatgtca cagccgcagg cctgggcgat gatttccgcc gtacgccggg tgcgtcctaa
    14401 atcgctactg ataatatgcg taatgccaag ctctttggca cgggttgcca cctgcatcgc
    14461 ctgttgctca cctttggcgg tcagcgggct gtcagactgg ccctgaatac gtcgctcggc
    14521 gttccactgc gtttcaccgt ggcggactag gtatacctgt aacatgcttt ttttccgtat
    14581 actgctgtaa cgttaatttt ctgagtaatg ctgattatgc accaagttgt ctgtgcgacc
    14641 accaatcccg ctaaaattca ggccattctg caggcatttc acgagatctt cggcgaagga
    14701 tcctgccata ttgcatccgt tgccgtcgag agcggtgtac cggaacagcc ctttggcagt
    14761 gaggaaacgc gcgctggcgc acgaaatcgg gtagcaaatg cccgccgttt acttccagag
    14821 gctgattttt gggtggcgat tgaagctggc atcgatggtg acagcacttt cagttgggtg
    14881 gtgattgaaa acaccagcca gcgcggcgag gcgcgttcgg ctactttgcc gttacctgcg
    14941 gtgattctgc agaaagtgcg tgaaggtgag gcgcttggtc ccgtgatgtc gcgttatacc
    15001 ggtattgatg agattggtcg taaggaaggg gcgatcggcg tgtttaccgc cgggaaactc
    15061 actcgcgcca gcgtctatca ccaggcggtg atcctggcgc tgagtccgtt tcacaatgcc
    15121 gtgtatcagg cattgtagga cggataaggc gttcacgccg catccggcat tcggtgcacg
    15181 atgcctgatg cgacgctgcc gcgtcttatc aggcctacaa aatcaatcgc ttttcagcaa
    15241 cacctcttcc agccactggc gcagctccac gggcgcggct ttcaggctgt tagatccacg
    15301 cgtaatcgtc gcgatgcccg cgccgagttc attttttaac tcacgctgac tcatttcgcc
    15361 acgcaacagc tcttcgacaa tacgcacgcg agtccccaac gcttcgcgct catctggcgt
    15421 cagcatcagg tttaacaacg gtaaatggag atcgttttgg taggcattct taagcaggtc
    15481 gacaaaacgt aaccactcct ggtgacgctg ttctgccatc gctgctgaat agggtgattg
    15541 ttgggccata atatgtcgcc attgttagcg ggggaagcaa aatgcctccc ccggttgtac
    15601 tcgctaaaga gtacgatagc atatcataaa cgtgcggatc agtaacgacg tccccattcc
    15661 gtggcgctca tcaacgtcgg tttatccccc atgaaataac ggtagtaagc gtcataagcc
    15721 agcacgttct tcacataacc gcgcgtctcg gagaacggaa tactctcgac aaatgccaca
    15781 gcgtcgatac gcccggcgct gttgccaagc caggttcgca cccgtccagg tccggcgtta
    15841 taagctgctg aggagaaaat acggttattg ccaaactgct gataaacata ttgcaggtaa
    15901 ctggtgccaa tgttgatatt cgtttccgga tccagcaatt gcccagggct gctataacca
    15961 ggaatagaga acatcttcac cgtatgggtc gctgtaccag gcataatctg catcaggccg
    16021 ctggccccta ccggtgattt cactttcgga ttccaggcgc tctcctgacg ggcaatcgcc
    16081 atcgcatagc tttgcgggat ctctttccca ctggtgtaac gtttgaaaag atcgttgtaa
    16141 gccagcggga atcgctcttc cagatgatcc caaagcttcc cggcgatcgt tgcctgaacg
    16201 ctaagatccc accattggtt attgaaagca taccgagcca gttgagcctg ctctgttttt
    16261 gacttgctct tcaccagatt ggcccactcg ctacgcgcgg tgttatcgag attccagtac
    16321 atcaactcgc gcacgcgcgc catctccggc ccctgagtca gggcgctgtc aacattctgc
    16381 ggcgctttat caatcttcag ctcatactct tctccgatgc gttgtgctgc aaccatcggg
    16441 tagaaaccac gctgttgcat gagttgatgc aaaatctctt tcgcttcagc ttcacgtccg
    16501 cgttccagca ataaatccgc ctgccagtaa cgccattcat ctttctcttt tgcttccatc
    16561 ggcagacgcg ccagccaggt attcaggccg cgacgatcgc cggtgccaag tgccattcgc
    16621 acacggcgtt caatcaacga cgtggattgc gagcgcataa tggcgtcatc gcgccatttc
    16681 gcctgctcgt cggtgacatc gttgcccatc aaacgccagg cgacgatatc gcgcagctcc
    16741 tgaatctgat cttcattaag ctgctgcgcc tgggcaagcg acgggatcat cagccgtgca
    16801 ttttcagcat cctgccgcgc cacactggca aacgccaccg ctgccatttg acgggtaaaa
    16861 tcggtcgctc cggttgtacg cgcgaaggtc agtaccgtat tagggttgtt cgccagtgaa
    16921 atgattgccg aggcgatagt ctggtaatcg gcaggcatct gccctgccag cactgttacc
    16981 aggccagtgt tacccgcttt catcgccaga cggatacgct ctaaatacgc cagcggatct
    17041 tgtttacctg acgcacgcca gacgctaaat aacttgtcac aggcgttagg ctggctcttg
    17101 ccggttagcc acagctcttt cgccccttgc caggcttctt cactctgccc ggtgttccat
    17161 ttcgcatagt agtaattaca ttgcgcttcg gtagttccgg gcttttccgg gctaaaggct
    17221 aacaagccac gccagtcttc acgccgcgcc agttcattga cgaaacgaga ttgcagcgtg
    17281 cgagcgggag gaagcgtggg gttagcgcga acaaagttag tgaccgtcac cgccggttga
    17341 ttcatcagat catcggtgat ctggcggtat tccaggtagg gataaagcgg ataatccttc
    17401 agtccaggca tcatttgttc gaccacatcc atttgtcgat tatcccaggc ctgcttgatt
    17461 tgcgcgtaac ggctacgctg ctcatccagt gagtcggctc gcgccacgct gctgaccgtc
    17521 agcagacaga caccggcagc caacagccgc caggtaactt gtttggcttt ttccacaagc
    17581 gcatcctcta agtgtaaata catcaatgca gcgtcatgcc gcgtaataga tttatgctaa
    17641 ccagtcattg ccgtttacgc cacgttacgg acactttttt acttttactg cgaaggtgat
    17701 cgaccaactg ggattaggcg gggaaaaagg ctacacttcg cctttgaaaa ctcatcatca
    17761 cgataaacat agaggcgaag tccaacgtgg ctcaattcgt ttataccatg catcgtgtcg
    17821 gcaaagttgt tccgccgaaa cgtcatattt tgaaaaacat ctctctgagt ttcttccctg
    17881 gggcaaaaat tggtgtcctg ggtctgaacg gcgcgggtaa gtctaccctg ctgcgcatta
    17941 tggcaggcat tgataaagac atcgaaggtg aagcgcgtcc gcagccagac atcaagattg
    18001 gttacctgcc gcaggaaccg cagctgaacc cggaacacac cgtgcgtgag tccattgaag
    18061 aagcggtttc tgaagtggtt aacgccctga aacgcctgga tgaagtgtat gcgctgtacg
    18121 ccgatccgga tgccgatttt gacaagctgg ccgctgaaca aggccgtctg gaagagatca
    18181 ttcaggctca cgacggtcat aacctgaacg tacagctgga gcgtgcggcg gatgcgctac
    18241 gtctgccgga ctgggacgcg aaaatcgcta acctctccgg tggtgagcgt cgtcgcgtag
    18301 cgttgtgccg cctgctgctg gaaaaaccag acatgctgct gctcgacgaa ccgaccaacc
    18361 acctggatgc cgaatccgtg gcctggctgg aacgcttcct gcacgacttc gagggcaccg
    18421 tggtggcgat tacccacgac cgttacttcc tcgataacgt tgcaggctgg atcctcgaac
    18481 ttgaccgcgg tgaaggtatt ccgtgggaag gcaactactc ctcctggctg gagcagaaag
    18541 atcagcgcct ggcgcaggaa gcttcacaag aagcggcgcg tcgtaagtcg atcgagaaag
    18601 agctggagtg ggtacgtcag ggaactaaag gccgccagtc gaaaggtaaa gcacgtctgg
    18661 cacgctttga agagctgaac agcaccgaat atcagaaacg taacgaaacc aacgaactgt
    18721 ttattccacc tggaccgcgt ctgggcgata aagtgctgga agtcagcaac ctgcgtaaat
    18781 cctacggtga tcgcctgctg attgatgacc tgagcttctc gatcccgaaa ggggcaatcg
    18841 tcgggatcat cggtccgaac ggcgcgggta aatcgaccct gttccgtatg atctctggtc
    18901 aggaacagcc ggacagcggc accatcactt taggtgaaac ggtgaaactg gcatcggttg
    18961 atcagttccg tgactcaatg gataacagca aaaccgtttg ggaagaagtt tccggcgggc
    19021 tggatattat gaagatcggc aacaccgaga tgccaagccg cgcctacgtt ggccgcttta
    19081 actttaaagg ggttgatcag ggtaaacgcg ttggtgaact ttccggtggt gagcgcggtc
    19141 gtctgcatct ggcgaagctg ctgcaggttg gcggcaacat gctgctgctc gacgaaccaa
    19201 ccaacgacct ggatatcgaa accctgcgcg cgctggaaaa cgccctgctg gagttcccgg
    19261 gctgtgcgat ggttatctcg cacgaccgtt ggttcctcga ccgtatcgcc acgcacatcc
    19321 tggactacca ggatgaaggt aaagttgagt tcttcgaagg taactttact gagtacgaag
    19381 agtacaagaa acgcacgctg ggcgcagacg cactggagcc gaagcgtatc aagtacaagc
    19441 gtattgcgaa gtaatgcgta aaatgccgga tgcggcgtga acgccttatc cggcctacaa
    19501 accaagaaat ttcaatacgt tgtgaatctc caggcctgat aagacgcggt aagcgtcgca
    19561 tcaggcattg agcaccgaat gccggatacg gcgtgaacgc cttttccggc ctacaatagc
    19621 cttagtatcc gcaatttcgt agcgggtcac ccgtgctgat tcttttaaac cttgtttaat
    19681 ctcgacagcc tcttccagag aggttttcaa ctcatcaaaa aacctatttt atacctcgcc
    19741 tttgagccgt ttcatcgcgg ttatctctgc tcccccatca tctcccgcac cagctccacg
    19801 cagcgcagga aacggctgtc ataatcgtcc tcttcaaccc gcacgaattc gatattgttc
    19861 tcttccagca tctccaccag caagttctgg aactctttgc gatccaccga actgccgagg
    19921 ctgcgtaaac catccgccac ccacggcgtg ttgttctcca gcaggatcac cagatcgaaa
    19981 cggtattcat caatcaacgc ctgtacgaac ggatgctcac gcccttcgta ctttttgcag
    20041 aacgcctggg tagtgacaaa atcagtgtca ataaacgcca ctttattggc atatttcact
    20101 gcaaaatcaa tgtattgtgc gtggcccagc gcgattttat cgtaatcgga atactgcaat
    20161 gcgatctcat caccgccgag gtgtgaaaag acataatcgc gaccatattc ccacgcactg
    20221 gtggtattga agatattggc aagtttgttt accagggtgg atttaccgct cgactcgcca
    20281 ccaaggatcg ccacggtacg tacaaagaac ggcttcactt ccgtaggaat atattcccag
    20341 tagcggaacg ggttttcgcg gatctgcgca ccgctgatac tcataaaggt acgtttcgga
    20401 tcgaccagca ccgtatcgat ccccagatgt tccatatact gtggcgcatc ggcttcttcc
    20461 gaggtgtaga tcaggtccgg ctgaatcccc ttttcagcca taaacttttt gatgccgttg
    20521 ctccacacat cccagccgtg cggatacggc tccatgccct cctcgttgaa agcatgaatg
    20581 cgaatatttt tctgatattt aaaagtttgt aataaccagc gcagacgatc cggcaccgtg
    20641 ggctgctgcg acatggcgct gtcttcaaac aacgcgcggt cgcgggtatc gtcaaaaccc
    20701 ataatgatat gcagctcgtc aacctggcta caggcgcgct ggataaggta gatatgtccg
    20761 gtatgcagcg ggtagaactt accgaatacg acaccaatgg ttttcttctg tcggggaaat
    20821 tcaagcccca aaaaacggtg caacgcctcc agcttttgcg cgctggggct tttaattttg
    20881 gcattcagta actggcttaa ataccctttg gtcataccgc tggcatcagc tacctgctgt
    20941 agcgtgcagc cctgttgctt gatggcagtt ttcaggtaat caaatgacga catatctccc
    21001 tccgtatctc tcattataag tcgtcgaaca cgctaagcgc gtcggagagt tttttaacgc
    21061 caaaaatctg catcccttcc ggcgcttttt tcggtacgtt agccgccgga acaatcgccc
    21121 ggcgaaaacc gtgtttcgcc gcttctgaaa ttcgttcctg accgctgggc accgggcgga
    21181 tctcccctgc cagcccgact tcaccaaaca ccaccagatc ctgtggcagc ggtctgtcac
    21241 gcaggctgga aaccatcgcc agcagtaacg ctaaatcggc actggtttcg gttaccttca
    21301 cgccgccgac cacgttcaca aatacatcct gatcggccat ttgcagacca ccgtgacggt
    21361 gcaagacagc cagcaggatt gccagacggt tttgttccag ccccactgcc acgcggcgcg
    21421 gattcgccat catcgagtga tcgaccagcg cctgaatctc caccagcaac ggacgcgttc
    21481 cttcccacac caccatcacg gagctgccgg aggtcacttc atctccgcga cttaagaaaa
    21541 ttgccgaagg gttgctgact tcacgcagcc cctgttcggt catcgcgaag acgcccagct
    21601 cattcaccgc gccgaagcgg tttttatggc tgcgcaaggt gcgaaaacgg gagtcggcat
    21661 caccatccag aagcaccgaa cagtcgatac agtgttccag cactttaggg ccagccagcg
    21721 agccatcttt ggttacgtgc ccaaccatga caatcgccac accgcgcgtt ttggcgaagc
    21781 gcgtcagata agccgccgtt tcacgcacct gcgccacgct accaggcgat gattgtacat
    21841 ccgccatatg catcacctgg atcgagtcaa ttaccatcag tttcggttgc tcttcttcgg
    21901 caatcaggca gatctgttcg atgctggttt ccgacaacat attgagattg tcagtcggca
    21961 ggccaaggcg atgagcgcgc attgccacct gttgcagcga ctcttcgcca gtgacataca
    22021 gcgttttcat ctgctgggcc agtttgcaca gcgtttgcag tagcagcgtg gatttccccg
    22081 cacctgggtt accgccaatc agaatggcgc ttcccggcac cacgccgccg cctagtacgc
    22141 ggtcgaactc tttaaatccg gtggaaaaac gcggcagctc ttcaaggctg atatcggaga
    22201 gtttctggac ttttgccacc ccggcgctac cggcatagcc gctgagacgc tcgttacgcg
    22261 ccaccgttgg cgacgcagca agacgcacct cggtgatggt gttccaggca tgacaggcac
    22321 tgcactgccc ctgccagcgc ggataatcgg ccccgcattc attacaaaca aaggcgcgtt
    22381 ttggagcttt tgccacggtg tacctcgtta atgctgtgcc gcccgcagga tggcgggcga
    22441 gcaattactt ctgattcagg ctgccagaga ggatgcagaa tacccccatc aggtcagcgt
    22501 gacggatggt gacttccgcc ttttcattca cttttggctt ggcatggtag gcaatcccca
    22561 gccctgctgc tttgatcatc ggcaggtcat tagctccatc gccaatcgcc acggtctgcg
    22621 ccagcgggat ttcatactcc tgcgcgaggc gagtcaaagt tttcgctttg tactgcgcgt
    22681 ctacgatgtc gccgatcaca ttgccggtaa atttaccgtc catgatctcc agttcattgg
    22741 ctaccacggc ggtcaggcgc agcttgtcgc gcagatattc agcaaagaaa gtaaagccgc
    22801 cggaggcaat cgccactttc cagcccagcg tttccagctt gagcaccagt tgcgttaagc
    22861 ctggcatcag cggcagattt tcacgcacct gttgcagaat attggcgtca gcgcctttca
    22921 gcgtcgccac acggctgcgc aggctggcgg taaaatcgag ttcgccgcgc atcgcccgtt
    22981 cggttacttc cgccaccatc tcgcccgttc cggccagttt ggcaatttca tcaatacatt
    23041 caatctggat ggcggtggaa tccatgtcca tcaccagcaa acccggcgtg cgcaggtgcg
    23101 ggattttccc cagcggggcg acatccagtt gcgcttcatg ggccaggcgc gtagcccgtg
    23161 cggtgagtga acctgccaga cgaatcacct gataatcttc cacgcaccag gcggcaacaa
    23221 tcaccatcgc cgcacccagt ttgctctggt attgggtcag acgctgttta tccagcccac
    23281 gaccatacag cagccagccg ctacgacctg cgtggtaatc cagtggcatc acttcatcac
    23341 cacttaatga aagaggcaga ccaggccata aagagacatc ttcaggcagg tcgcaccagg
    23401 taatgttagg cattaaggat cctgtaaaat cgttcgaagc agggaaaata acgcatgagg
    23461 ctaccttgta tccattgctt ctggcaacat taagtctcaa attttcaaag ggtggaagat
    23521 ggctcgcaca aaactgaaat tccggctgca tcgggcagtg attgtcctgt tctgtcttgc
    23581 cttgttagtg gcgctgatgc agggagcgtc atggtttagt caaaaccacc agcgacaacg
    23641 taatccacag ctggaagaac tggcccgcac cctggcgcgt caggtaacgc tgaacgttgc
    23701 accgctgatg cgtaccgact caccggatga aaaacgcatt caggcgatcc tcgatcagtt
    23761 aacggatgaa agccgtatcc tcgacgcggg tgtgtatgac gaacaaggcg atcttatcgc
    23821 acgttctggc gaaagcgtcg aagtgcgcga ccggctggcg ctcgacaccc atacgctcgc
    23881 caccgaagcc caacaggtgg ataacaccac taacatttta cgcctgatgt tgctgctttc
    23941 actggcaatc ggcgtagtgc tgacccgcac gctgctacag ggtaaacgta cccgctggca
    24001 gcaatcgccc ttcctgttaa ccgccagcaa accggtgccg gaagaggaag aaagcgagaa
    24061 aaaagagtga cccattacta caagaaagga aatcgttatg tccacattac gcctgctcat
    24121 ctctgactct tacgacccgt ggtttaacct ggcggtggag gagtgtattt ttcgccagat
    24181 gcccgccacg cagcgcgttc tgtttctctg gcgcaatgcc gacacggtag tgattggtcg
    24241 cgcgcagaac ccgtggaaag agtgtaatac ccggcggatg gaagaagata acgtccgcct
    24301 ggcacggcgc agtagcggtg gcggcgcggt gttccacgat ctcggcaata cctgctttac
    24361 ctttatggct ggcaagccgg agtacgataa aaccatctcc acgtcgattg tgctcaatgc
    24421 gctgaacgcg cttggcgtca gcgccgaagc gtccgggcgt aacgatctgg tggtgaaaac
    24481 cgccgaaggc gaccgcaaag tctcaggatc ggcctatcgc gaaaccaaag atcgtggctt
    24541 ccaccacggc accttgctgc tcaatgccga ccttagccgc ctggcaaact atctcaatcc
    24601 ggataaaaag aaactggcgg cgaaaggcat tacctcagtg cgttcccgcg tgaccaacct
    24661 caccgagctg ctgccgggga tcacccatga gcaggtttgc gaggccataa ccaaggcctt
    24721 tttcgcccat tatggcgagc gtgtagaagc ggaaatcatc tccccggaca aaacgccaga
    24781 cttgccaaac ttcgccgaaa tctttgcccg tcagagtagc tgggaatgga acttcggtca
    24841 ggctccggca ttctcgcatc tgctggatga acgctttagc tggggcggcg tggaactgca
    24901 tttcgacgtt gaaaaaggcc atatcacccg cgcccaggtg tttaccgaca gcctcaaccc
    24961 cgcgccgctg gaagccctcg ccgggcgact gcaaggctgc ctgtaccgcg cggatatgct
    25021 gcaacaagag tgcgaagcgc tgttggttga cttcccggac caggaaaaag agctacggga
    25081 gttgtcgacg tggatagcgg gggcggtaag gtaactcgct gattaaaata ccaaaggaag
    25141 ggaatatgat cgatctggaa aaccaggagc gggagattat caatttaatg ttaagccagc
    25201 gtatttcctg gctagccgcc gtgcgtatca ggcataaatt atcgcttgct gaagtaagta
    25261 aaatgttagg tatctcgatt aattctctaa aatagatcga aaagacggaa cggtttagct
    25321 caaacatcaa aagcaaaatg gcagaaattt atggttgtcc accagagttg ctgatatgcc
    25381 cttcctggat gacggctgaa cataaatgaa tagatt
//
LOCUS       DAJVUP010000044        25220 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.044, whole genome shotgun sequence.
ACCESSION   DAJVUP010000044 DAJVUP010000000
VERSION     DAJVUP010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25220
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.044"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..381)
                     /locus_tag="OQQ75_001670"
     CDS             complement(<1..381)
                     /locus_tag="OQQ75_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS1976042.1"
                     /translation="MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFY
                     QVCHPDGLADALWGTIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFL
                     PRLVFLAASFACGAVVIGLLMRGKE"
     gene            760..1071
                     /gene="rpsJ"
                     /locus_tag="OQQ75_001671"
     CDS             760..1071
                     /gene="rpsJ"
                     /locus_tag="OQQ75_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HCS1976043.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            1104..1733
                     /gene="rplC"
                     /locus_tag="OQQ75_001672"
     CDS             1104..1733
                     /gene="rplC"
                     /locus_tag="OQQ75_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HCS1976044.1"
                     /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG
                     YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA
                     DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
                     MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA"
     gene            1744..2349
                     /gene="rplD"
                     /locus_tag="OQQ75_001673"
     CDS             1744..2349
                     /gene="rplD"
                     /locus_tag="OQQ75_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HCS1976045.1"
                     /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR
                     AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR
                     GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA
                     ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA"
     gene            2346..2648
                     /gene="rplW"
                     /locus_tag="OQQ75_001674"
     CDS             2346..2648
                     /gene="rplW"
                     /locus_tag="OQQ75_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007891652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HCS1976046.1"
                     /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK
                     AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE"
     gene            2666..3487
                     /gene="rplB"
                     /locus_tag="OQQ75_001675"
     CDS             2666..3487
                     /gene="rplB"
                     /locus_tag="OQQ75_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HCS1976047.1"
                     /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN
                     NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT
                     YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK"
     gene            3504..3782
                     /gene="rpsS"
                     /locus_tag="OQQ75_001676"
     CDS             3504..3782
                     /gene="rpsS"
                     /locus_tag="OQQ75_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HCS1976048.1"
                     /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM
                     IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK"
     gene            3797..4129
                     /gene="rplV"
                     /locus_tag="OQQ75_001677"
     CDS             3797..4129
                     /gene="rplV"
                     /locus_tag="OQQ75_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HCS1976049.1"
                     /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA
                     VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            4147..4848
                     /gene="rpsC"
                     /locus_tag="OQQ75_001678"
     CDS             4147..4848
                     /gene="rpsC"
                     /locus_tag="OQQ75_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HCS1976050.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT
                     KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN
                     IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE
                     KPAAQPKKQQRKGRK"
     gene            4861..5271
                     /gene="rplP"
                     /locus_tag="OQQ75_001679"
     CDS             4861..5271
                     /gene="rplP"
                     /locus_tag="OQQ75_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HCS1976051.1"
                     /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR
                     QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM"
     gene            5271..5462
                     /gene="rpmC"
                     /locus_tag="OQQ75_001680"
     CDS             5271..5462
                     /gene="rpmC"
                     /locus_tag="OQQ75_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000644743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HCS1976052.1"
                     /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK
                     QVRRDVARVKTLLNEKAGA"
     gene            5462..5716
                     /gene="rpsQ"
                     /locus_tag="OQQ75_001681"
     CDS             5462..5716
                     /gene="rpsQ"
                     /locus_tag="OQQ75_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HCS1976053.1"
                     /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL
                     HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL"
     gene            5881..6252
                     /gene="rplN"
                     /locus_tag="OQQ75_001682"
     CDS             5881..6252
                     /gene="rplN"
                     /locus_tag="OQQ75_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015817037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HCS1976054.1"
                     /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            6263..6577
                     /gene="rplX"
                     /locus_tag="OQQ75_001683"
     CDS             6263..6577
                     /gene="rplX"
                     /locus_tag="OQQ75_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HCS1976055.1"
                     /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK
                     HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET
                     IK"
     gene            6592..7131
                     /gene="rplE"
                     /locus_tag="OQQ75_001684"
     CDS             6592..7131
                     /gene="rplE"
                     /locus_tag="OQQ75_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HCS1976056.1"
                     /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI
                     ADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA
                     KSDEEGRALLAAFDFPFRK"
     gene            7146..7451
                     /gene="rpsN"
                     /locus_tag="OQQ75_001685"
     CDS             7146..7451
                     /gene="rpsN"
                     /locus_tag="OQQ75_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HCS1976057.1"
                     /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA
                     VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            7485..7877
                     /gene="rpsH"
                     /locus_tag="OQQ75_001686"
     CDS             7485..7877
                     /gene="rpsH"
                     /locus_tag="OQQ75_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HCS1976058.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG
                     FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            7890..8423
                     /gene="rplF"
                     /locus_tag="OQQ75_001687"
     CDS             7890..8423
                     /gene="rplF"
                     /locus_tag="OQQ75_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HCS1976059.1"
                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK
                     HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
                     INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK
                     GVRYADEVVRIKEAKKK"
     gene            8433..8786
                     /gene="rplR"
                     /locus_tag="OQQ75_001688"
     CDS             8433..8786
                     /gene="rplR"
                     /locus_tag="OQQ75_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HCS1976060.1"
                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG
                     SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
                     VQALADAAREAGLQF"
     gene            8801..9304
                     /gene="rpsE"
                     /locus_tag="OQQ75_001689"
     CDS             8801..9304
                     /gene="rpsE"
                     /locus_tag="OQQ75_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HCS1976061.1"
                     /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
                     VEEILGK"
     gene            9308..9487
                     /gene="rpmD"
                     /locus_tag="OQQ75_001690"
     CDS             9308..9487
                     /gene="rpmD"
                     /locus_tag="OQQ75_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HCS1976062.1"
                     /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI
                     RGMINAVSFMVKVEE"
     gene            9491..9925
                     /gene="rplO"
                     /locus_tag="OQQ75_001691"
     CDS             9491..9925
                     /gene="rplO"
                     /locus_tag="OQQ75_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HCS1976063.1"
                     /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG
                     GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG
                     IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE"
     gene            9933..11264
                     /gene="secY"
                     /locus_tag="OQQ75_001692"
     CDS             9933..11264
                     /gene="secY"
                     /locus_tag="OQQ75_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004868351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HCS1976064.1"
                     /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI
                     DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL
                     AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA
                     VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL
                     VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP
                     AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA
                     LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR
                     DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR"
     gene            11296..11412
                     /gene="rpmJ"
                     /locus_tag="OQQ75_001693"
     CDS             11296..11412
                     /gene="rpmJ"
                     /locus_tag="OQQ75_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HCS1976065.1"
                     /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG"
     gene            11559..11915
                     /gene="rpsM"
                     /locus_tag="OQQ75_001694"
     CDS             11559..11915
                     /gene="rpsM"
                     /locus_tag="OQQ75_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HCS1976066.1"
                     /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK
                     ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            11932..12321
                     /gene="rpsK"
                     /locus_tag="OQQ75_001695"
     CDS             11932..12321
                     /gene="rpsK"
                     /locus_tag="OQQ75_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HCS1976067.1"
                     /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW
                     ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            12355..12975
                     /gene="rpsD"
                     /locus_tag="OQQ75_001696"
     CDS             12355..12975
                     /gene="rpsD"
                     /locus_tag="OQQ75_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HCS1976068.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR
                     KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV
                     YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
                     LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK"
     gene            13001..13990
                     /gene="rpoA"
                     /locus_tag="OQQ75_001697"
     CDS             13001..13990
                     /gene="rpoA"
                     /locus_tag="OQQ75_001697"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HCS1976069.1"
                     /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL
                     NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH
                     SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR
                     RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE"
     gene            14031..14414
                     /gene="rplQ"
                     /locus_tag="OQQ75_001698"
     CDS             14031..14414
                     /gene="rplQ"
                     /locus_tag="OQQ75_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HCS1976070.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL
                     RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRSEKAEAAAE"
     gene            14521..14889
                     /locus_tag="OQQ75_001699"
     CDS             14521..14889
                     /locus_tag="OQQ75_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HCS1976071.1"
                     /translation="MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELR
                     AGYRLLKNAGCLPPELEQRREAIQLLDILRGIRHDDPQYQEVSRRLSLLELKLRQAGF
                     STDFLRGDYADKLLDKINDN"
     gene            14900..15325
                     /gene="zntR"
                     /locus_tag="OQQ75_001700"
     CDS             14900..15325
                     /gene="zntR"
                     /locus_tag="OQQ75_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(2+)-responsive transcriptional regulator"
                     /protein_id="HCS1976072.1"
                     /translation="MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESD
                     LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS
                     MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC"
     gene            15381..15599
                     /gene="arfA"
                     /locus_tag="OQQ75_001701"
     CDS             15381..15599
                     /gene="arfA"
                     /locus_tag="OQQ75_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor ArfA"
                     /protein_id="HCS1976073.1"
                     /translation="MSRYQHTKGQIRDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGK
                     HGNRGNWEASGKKVNHFFTTGLLLSGAC"
     gene            complement(15596..16006)
                     /gene="mscL"
                     /locus_tag="OQQ75_001702"
     CDS             complement(15596..16006)
                     /gene="mscL"
                     /locus_tag="OQQ75_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HCS1976074.1"
                     /translation="MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP
                     LGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL
                     NRKKEEPAAAPAPTKEEVLLAEIRDLLKEQNNRS"
     gene            complement(16136..17512)
                     /gene="trkA"
                     /locus_tag="OQQ75_001703"
     CDS             complement(16136..17512)
                     /gene="trkA"
                     /locus_tag="OQQ75_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HCS1976075.1"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD
                     LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP
                     DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA
                     YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI
                     RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN
                     TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA
                     YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS
                     RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL
                     FQPSPFFL"
     gene            complement(17534..18823)
                     /gene="rsmB"
                     /locus_tag="OQQ75_001704"
     CDS             complement(17534..18823)
                     /gene="rsmB"
                     /locus_tag="OQQ75_001704"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HCS1976076.1"
                     /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL
                     QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET
                     VEGAIAIKRPQLKGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYPEQ
                     WQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH
                     ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAV
                     DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH
                     PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQR
                     TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK"
     gene            complement(18869..19816)
                     /gene="fmt"
                     /locus_tag="OQQ75_001705"
     CDS             complement(18869..19816)
                     /gene="fmt"
                     /locus_tag="OQQ75_001705"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HCS1976077.1"
                     /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG
                     KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVADLQADVMVVVAYGLILPKAVLEM
                     PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT
                     AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWS
                     LSAAQLERYIRAFNPWPMSWLEIERQPVKVWKASVIDTATNAAPGTILEANKQGIQVA
                     TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLA"
     gene            complement(19831..20340)
                     /gene="def"
                     /locus_tag="OQQ75_001706"
     CDS             complement(19831..20340)
                     /gene="def"
                     /locus_tag="OQQ75_001706"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HCS1976078.1"
                     /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG
                     IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP
                     RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE
                     KLDRLKARA"
     gene            20470..21594
                     /gene="dprA"
                     /locus_tag="OQQ75_001707"
     CDS             20470..21594
                     /gene="dprA"
                     /locus_tag="OQQ75_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HCS1976079.1"
                     /translation="MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGL
                     TLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGEL
                     YALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
                     GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVSPLAYNFPRRNRIISGL
                     SKGVLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEP
                     EEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQP
                     VPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV"
     gene            21566..22039
                     /locus_tag="OQQ75_001708"
     CDS             21566..22039
                     /locus_tag="OQQ75_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 domain-containing protein"
                     /protein_id="HCS1976080.1"
                     /translation="MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFDREDIYNAL
                     LWLEKLADYQEGLTEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLEI
                     REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH"
     gene            22068..22610
                     /locus_tag="OQQ75_001709"
     CDS             22068..22610
                     /locus_tag="OQQ75_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HCS1976081.1"
                     /translation="MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV
                     RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDET
                     AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
                     AQGVKHFCASKQCGKPVSAE"
     gene            22615..23187
                     /gene="tsaC"
                     /locus_tag="OQQ75_001710"
     CDS             22615..23187
                     /gene="tsaC"
                     /locus_tag="OQQ75_001710"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase type 1
                     TsaC"
                     /protein_id="HCS1976082.1"
                     /translation="MNNNLQGDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVM
                     RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPAT
                     TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA
                     AFPVVLGETGGRLNPSEIRDALTGELFRQG"
     gene            23192..24010
                     /gene="aroE"
                     /locus_tag="OQQ75_001711"
     CDS             23192..24010
                     /gene="aroE"
                     /locus_tag="OQQ75_001711"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HCS1976083.1"
                     /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI
                     NTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLKRLEDGRLQGDNTD
                     GIGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK
                     LFAHTGSIQALGMDELEGHEFDLIINATSSGISGDIPAIPSSLIHLGIYCYDMFYQKG
                     KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA"
     gene            24007..24264
                     /locus_tag="OQQ75_001712"
     CDS             24007..24264
                     /locus_tag="OQQ75_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1488 domain-containing protein"
                     /protein_id="HCS1976084.1"
                     /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF
                     TGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP"
     gene            complement(24240..24794)
                     /locus_tag="OQQ75_001713"
     CDS             complement(24240..24794)
                     /locus_tag="OQQ75_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HCS1976085.1"
                     /translation="MSDVLRPYRDLFPQIGQRVMIDDSSVVIGGVRLADDVGIWPLVV
                     IRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGN
                     RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAG
                     LRYSANNYVKWKDEYLDQGNQTQP"
BASE COUNT         6451 a         5994 c         6563 g         6212 t
ORIGIN      
        1 ttcttttcct ctcatgagca gaccaataac tacggctccg caagcgaatg aggcagcaag
       61 gaaaaccagt cgtggtaaga aggcccatga atgccaggcg ccaagggcgg cgagaaactt
      121 cacatcacca tagcctaatc cttctttatg tcgcagtatg cgataccccc agtaaatgac
      181 agcgaatgtg ccgtaaccaa caattgtccc ccataacgca tcggctaaac catcaggatg
      241 acaaacttga tagaacaaaa gacctgacca gagtaacggg cacgtaaatc tgtcaggtaa
      301 caagccatgc tttgcatccc agaaaaaaag tagggctgat aaacaagcgt acaaaatcag
      361 aaagggaagg gtagtgtcca taaaacatcc tctgtaattg gagtatcacc atcgaataac
      421 tccggatgct cagcaacaga gagagcgctg atttgttaac ctgattccgg tgaaaaacgc
      481 tatcttcaca accttacaaa tttcgtggaa tgcagctcgc aatctgcgcg ttgcgattaa
      541 tttctacccg atgcttgcgt caggctcaga tttgcgtata atgcgcgggc ttgtcgtagt
      601 tgacagcagg ttcaatctga acctcagtta gccgaatttg gctacctaac aatgctccca
      661 atcggggagc tacgtaagaa cggttacact ctcccatcaa tcgtaatggg tctgaggagt
      721 aatcattttc gtttataaaa taattggagc tctggtctca tgcagaacca aagaatccgt
      781 atccgcctga aagcgtttga tcatcgtctg atcgatcaag caaccgcgga aatcgtcgag
      841 actgccaagc gcactggtgc gcaggtccgt ggtccgatcc cgctgccgac acgcaaagag
      901 cgcttcactg ttctgatctc cccgcacgtc aacaaagacg cgcgcgatca gtacgaaatc
      961 cgtactcact tgcgtctggt tgacatcgtt gagccaaccg agaaaaccgt tgatgctctg
     1021 atgcgtctgg atctggctgc cggtgtagac gtgcagatca gcctgggtta atcaggtcat
     1081 tgagcgattg agaggttgaa acaatgattg gtttagtcgg taaaaaagtg ggtatgaccc
     1141 gtatcttcac agaagacggc gtttctatcc cagtaaccgt aatcgaagtt gaagcaaacc
     1201 gcgttactca ggttaaagac ctggctaacg atggctaccg tgctattcag gtgaccaccg
     1261 gtgctaaaaa agctaaccgt gtgaccaagc ctgaagctgg ccacttcgct aaagctggcg
     1321 tagaagctgg ccgtggtctg tgggaattcc gcctggctga aggcgaagag ttcactgtag
     1381 gtcagagcat tagcgttgaa ctgtttgctg acgttaaaaa agttgacgta actggcacct
     1441 ctaaaggtaa aggtttcgca ggtaccgtta agcgctggaa cttccgtacc caggacgcta
     1501 ctcacggtaa ctccttgtct caccgcgttc cgggttctat cggtcagaac cagactccgg
     1561 gcaaagtgtt caaaggcaag aaaatggcag gtcagatggg taacgaacgt gtaaccgttc
     1621 agagccttga cgtagtacgc gttgacgctg agcgcaacct gctgctggtt aaaggtgctg
     1681 tcccgggtgc aaccggtagc gacctgatcg ttaaaccagc tgtgaaggcg taaggagata
     1741 gcaatggaat tagtattgaa agacgcgcag agcgcgctga ctgtttccga aactaccttc
     1801 ggtcgtgatt tcaacgaagc gctggttcac caggttgttg ttgcttatgc agctggtgct
     1861 cgtcagggta ctcgtgctca gaagactcgt gctgaagtaa ctggttccgg taaaaaaccg
     1921 tggcgccaga aaggcaccgg ccgtgcgcgt tctggttcta tcaagagccc gatctggcgt
     1981 tctggtggcg tgacctttgc tgctcgtccg caggaccaca gtcaaaaagt taacaagaag
     2041 atgtaccgcg gcgcgctgaa aagcatcctg tccgaactgg tacgtcagga tcgtctgatc
     2101 gttgtcgaga agttctctgt agaagcgccg aaaactaagc tgctggcaca gaaactgaaa
     2161 gacatggctc tggaagatgt gctgatcatc accggtgagc tggacgaaaa cctgttcctg
     2221 gctgcgcgca acctgcacaa ggttgacgta cgcgatgcaa ctggtatcga cccggttagc
     2281 ctgatcgcct tcgacaaagt cgtaatgact gctgatgctg ttaagcaagt tgaggagatg
     2341 ctggcatgat tcgtgaagaa cgtctgctga aggtgctgcg tgcaccgcac gtttctgaaa
     2401 aagcgtctac tgcgatggaa aaatccaaca ccatcgtact caaagttgct aaagacgcga
     2461 ccaaagcaga aatcaaagct gctgtgcaga aactgtttga agtcgaagtc gaagtcgtta
     2521 acaccctggt agttaaaggg aaagttaaac gtcacggaca gcgtatcggt cgtcgtagcg
     2581 actggaaaaa agcttacgtc accctgaaag aaggccagaa tctggacttc gttggcggcg
     2641 ctgagtaagt cggaggagta atacaatggc agttgttaaa tgtaaaccga catctccggg
     2701 tcgtcgccac gtagttaaag tggttaaccc tgagctgcac aagggcaaac cttttgctcc
     2761 gttgctggaa aaaaacagca aatccggtgg tcgtaacaac aatggccgta tcaccactcg
     2821 tcatatcggt ggtggccaca agcaggctta ccgtattgtt gacttcaaac gcaacaaaga
     2881 cggtatcccg gcagttgttg aacgtcttga gtacgatccg aaccgttccg cgaacatcgc
     2941 gctggttctg tacaaagacg gtgaacgccg ttacatcctg gcccctaaag gcctgaaagc
     3001 tggcgaccag attcagtctg gcgttgatgc tgcaatcaaa ccaggtaaca ccctgccgat
     3061 gcgcaacatc ccggttggtt ctactgttca taacgtagaa atgaaaccag gtaaaggcgg
     3121 tcagctggca cgttccgctg gtacttacgt tcagatcgtt gctcgtgatg gtgcttatgt
     3181 caccctgcgt ctgcgttctg gtgaaatgcg taaagtagaa gcagactgcc gtgcaactct
     3241 gggcgaagtt ggcaatgctg agcatatgct gcgcgttctg ggtaaagcag gtgctgcacg
     3301 ctggcgtggt gttcgtccga ccgttcgcgg taccgcgatg aacccggtag accacccaca
     3361 tggtggtggt gaaggtcgta actttggtaa gcacccggta actccgtggg gcgttcagac
     3421 caaaggtaag aagacccgca gcaacaagcg tactgataaa ttcatcgtac gtcgccgtag
     3481 caaataattt tagaggataa gccatgccac gttctctcaa gaaaggtcct tttattgacc
     3541 tgcacttgct gaagaaggta gagaaagcgg tggaaagcgg agacaagaag cccctgcgca
     3601 cttggtcccg tcgttcaacg atctttccta acatgatcgg tttgaccatc gctgtccata
     3661 atggtcgtca gcacgttccg gtatttgtaa ccgacgaaat ggtcggtcac aaactgggtg
     3721 aattcgcacc gactcgtact tatcgcggcc acgctgctga taaaaaagcg aagaagaaat
     3781 aaggtaggag gaagagatgg aaactatcgc taaacatcgc catgctcgtt cttctgctca
     3841 gaaggttcgc cttgttgctg acctgattcg cggtaagaaa gtgtcgcagg ctctggatat
     3901 tttgacctac accaacaaga aagcggctgt actggtcaag aaagttctgg aatctgccat
     3961 tgctaacgct gaacacaacg atggcgctga cattgacgat ctgaaagtta cgaaaatttt
     4021 cgtagacgaa ggcccgagca tgaagcgcat tatgccgcgt gcaaaaggtc gtgcagatcg
     4081 catcctgaag cgcaccagcc acatcactgt ggttgtgtcc gatcgctgag actctggaga
     4141 ctagcaatgg gtcagaaagt acatcctaat ggtattcgcc tgggtattgt aaaaccatgg
     4201 aactctacct ggtttgcgaa caccaaagaa ttcgctgaca acctggacag cgattttaaa
     4261 gtacgtcagt acctgactaa ggaactggct aaagcgtccg tatctcgtat cgttatcgag
     4321 cgtccggcta agagcatccg tgtaaccatt cacactgctc gcccgggtat cgttatcggt
     4381 aaaaaaggtg aagacgtaga aaaactgcgt aaggtcgtag cggacatcgc tggcgttcct
     4441 gcacagatca acatcgccga agttcgtaag cctgaactgg acgcaaaact ggttgctgac
     4501 agcatcactt ctcagctgga acgtcgcgtt atgttccgtc gtgctatgaa gcgtgctgta
     4561 cagaacgcaa tgcgtctggg cgctaaaggt attaaagttg aagttagcgg ccgtctgggc
     4621 ggcgcggaaa tcgcacgtac cgaatggtac cgcgaaggtc gcgtaccgct gcacactctg
     4681 cgtgctgaca tcgactacaa cacctctgaa gcgcacacca cttacggtgt aatcggcgtt
     4741 aaagtgtgga tcttcaaagg cgagatcctg ggtggtatgg ctgctgttga acaaccggaa
     4801 aaaccggctg ctcagcctaa aaagcagcag cgtaaaggcc gtaaataagg agcgtcgctg
     4861 atgttacaac caaagcgtac aaaattccgt aaaatgcaca aaggccgtaa ccgcggtctg
     4921 gcgcagggta cggatgttag cttcggcagc ttcggtctga aagctgttgg ccgtggtcgt
     4981 ctgactgccc gtcagatcga agcagcacgt cgtgctatga cccgtgcagt taagcgtcaa
     5041 ggtaagatct ggatccgtgt gttcccggac aaaccgatca ctgaaaagcc gctggcagtg
     5101 cgtatgggta aaggtaaagg taacgtggag tattgggttg ccttgattca gccgggtaaa
     5161 gtcctgtatg aaatggacgg tgttccggaa gagctggccc gtgaagcatt caagctggca
     5221 gcagcgaaac tgccgattaa aaccaccttt gtaactaaga cggtgatgta atgaaagcaa
     5281 aagagctgcg tgagaagagc gttgaagagc tgaacaccga gctgctgaac ctgctgcgtg
     5341 agcagttcaa cctgcgtatg caggctgcaa gtggccagct gcaacagtct cacctgttga
     5401 agcaagtgcg tcgcgatgtc gcacgcgtta agactttact gaacgagaag gctggtgcgt
     5461 aatgaccgat aaaatccgta ctctgcaagg tcgcgttgtt agcgacaaaa tggagaaatc
     5521 cattgttgtt gctatcgaac gttttgtgaa acacccgatc tacggtaaat tcatcaagcg
     5581 tacgaccaaa ctgcacgtac atgacgagaa caacgaatgc ggtatcggtg acgtggttga
     5641 aatccgcgaa tgccgtccgc tgtccaagac taaatcctgg acgctggttc gcgttgtaga
     5701 gaaagcggtt ctgtaataca gtacactctc tcgatacgaa taaacggctc agaaatgagc
     5761 cgtttatttt ttctacccat atccttgaag cggtgttata atgccgcgcc ctcgatatgg
     5821 ggatttttaa cgacctgatt ttcgggtctc agtagtagtt gacattagcg gagcactaaa
     5881 atgatccaag aacagactat gctgaacgtc gccgacaact ccggtgcacg tcgcgtaatg
     5941 tgtatcaagg ttctgggtgg ctcgcaccgt cgctacgcag gcgtaggcga catcatcaag
     6001 atcaccatca aagaagcaat tccgcgtggt aaggtcaaaa aaggtgatgt gctgaaggcg
     6061 gtagtggtgc gcaccaagaa gggtgttcgt cgcccggacg gttctgtcat tcgcttcgat
     6121 ggtaatgctt gtgttcttct gaacaacaac agcgagcagc ctatcggtac gcgtattttt
     6181 gggccggtaa ctcgtgagct tcgtagtgag aagttcatga aaattatctc tctggcacca
     6241 gaagtactct aaggagcgaa tcatggcagc gaaaatccgt cgtgatgacg aagttatcgt
     6301 gttaaccggt aaagataaag gtaaacgcgg taaagttaag aatgtcctgt cttccggcaa
     6361 ggtcattgtt gaaggtatca acctggttaa gaaacatcag aagccggttc cggccctgaa
     6421 ccaaccgggt ggcatcgttg aaaaagaagc cgctattcag gtttccaacg tagcaatctt
     6481 caatgcggca accggcaagg ctgaccgtgt aggctttaga ttcgaagacg gcaaaaaagt
     6541 ccgtttcttc aagtctaaca gcgaaactat caagtaattt ggagtagtac gatggcgaaa
     6601 ctgcatgatt actacaaaga cgaagtagtt aaaaaactca tgactgagtt taactacaat
     6661 tctgtcatgc aagtccctcg ggtcgagaag atcaccctga acatgggtgt tggtgaagcg
     6721 atcgctgaca aaaaactgct ggataacgca gcagcagacc tggcagcaat ctccggtcaa
     6781 aaaccgctga tcaccaaagc acgcaaatct gttgcaggct tcaaaatccg tcagggctat
     6841 ccgatcggct gtaaagtaac tctgcgtggc gaacgcatgt gggagttctt tgagcgcctg
     6901 atcactattg ctgtacctcg tatccgtgac ttccgtggcc tgtccgctaa gtctttcgac
     6961 ggtcgtggta actacagcat gggtgtccgt gagcagatca tcttcccaga aatcgactac
     7021 gataaagtcg accgcgttcg tggtttggat attaccatta ccactactgc gaaatctgac
     7081 gaagaaggcc gcgctctgct ggctgccttt gacttcccgt tccgcaagta aggtagggtt
     7141 actaaatggc taagcaatca atgaaagcac gcgaagtaaa acgcgtagct ttagctgata
     7201 aatacttcgc gaaacgcgct gaactgaaag cgatcatctc tgatgtgaac gcttccgacg
     7261 aagatcgttg gaacgctgtt ctcaagctgc agactctgcc gcgtgattcc agcccgtctc
     7321 gtcagcgtaa ccgctgccgt caaacaggtc gtccgcatgg tttcctgcgg aagttcgggt
     7381 tgagccgtat taaggtccgt gaagccgcta tgcgcggtga aatcccgggt ctgaaaaagg
     7441 ctagctggta attgtcacca attgaatcac gggagtaaag acagatgagc atgcaagatc
     7501 cgatcgcgga tatgctgacc cgtatccgta acggtcaggc cgcgaacaaa gctgcggtca
     7561 ccatgccttc ctccaagctg aaagtggcaa tcgccaacgt gctgaaggaa gaaggtttta
     7621 ttgaagattt taaagttgaa ggcgacacca agcctgaact ggaacttact ctgaagtatt
     7681 tccagggcaa agctgttgta gaaagcattc agcgtgtcag ccgcccaggt ctgcgcatct
     7741 ataaacgtaa agatgagctg ccgaaagtta tggcgggtct gggtatcgca gttgtttcta
     7801 cctctaaagg tgttatgact gatcgtgcag cgcgccaggc tggtcttggt ggcgaaatta
     7861 tctgctacgt agcctaatcg gaggaaaaaa tgtctcgtgt tgctaaagca ccggtcgttg
     7921 ttcctgccgg cgttgacgta aaaatcaacg gtcaggttat tacgatcaaa ggtaaaaacg
     7981 gcgagctgac tcgtactctc aacgatgctg ttgaagttaa acatgcagat aataccctga
     8041 ccttcggtcc gcgtgatggt tacgcagacg gttgggcaca ggctggtacc gcgcgtgccc
     8101 tgctgaactc aatggttatc ggtgttaccg aaggcttcac taagaagctg cagctggttg
     8161 gtgtaggtta ccgtgcagcg gttaaaggta atgtgattaa cctgtctctg ggtttctctc
     8221 atcctgttga ccatcagctg cctgcgggta tcactgctga atgtccgact cagactgaaa
     8281 tcgtgctgaa aggcgctgat aagcaggtga tcggccaggt tgcagcggat ctgcgcgcct
     8341 accgtcgtcc tgagccttat aaaggcaagg gtgttcgtta cgccgacgaa gtcgtgcgta
     8401 tcaaagaggc taagaagaag taaggtaaca ctatggataa gaaatctgct cgtatccgtc
     8461 gtgcgacccg cgcacgccgc aagctccagg agctgggcgc aactcgcctg gtggtacatc
     8521 gtaccccgcg tcacatttac gcacaggtaa ttgcaccgaa cggttctgaa gttctggtag
     8581 ctgcttctac tgtagaaaaa gctatcgctg aacaactgaa gtacaccggt aacaaagacg
     8641 cggctgcagc tgtgggtaaa gctgtcgctg aacgcgctct ggaaaaaggc atcaaagatg
     8701 tatcctttga ccgttccggg ttccaatatc atggtcgtgt ccaggcactg gcagatgctg
     8761 cccgtgaagc tggccttcag ttctaaggta gaggtgtaag atggctcaca tcgaaaaaca
     8821 agctggcgaa ctgcaggaaa agctgatcgc ggtaaaccgc gtatctaaaa ccgttaaagg
     8881 tggtcgtatt ttctccttca cagctctgac tgtagttggc gatggtaacg gtcgcgttgg
     8941 ttttggttac ggtaaagcgc gtgaagttcc agcagcgatc cagaaagcga tggaaaaagc
     9001 ccgtcgcaat atgattaacg tcgcgctgaa taacggcact ctgcaacacc ctgttaaagg
     9061 tgttcacacg ggttctcgcg tattcatgca gccggcttcc gaaggtaccg gtatcatcgc
     9121 cggtggtgca atgcgcgccg ttctggaagt cgctggggtt cataacgttc tggctaaagc
     9181 atatggttcc accaacccga tcaacgtggt tcgtgcaact attgatggcc tggaaaatat
     9241 gaattctcca gaaatggtcg ctgccaagcg tggtaaatcc gttgaagaaa ttctggggaa
     9301 ataaaccatg gcaaagacta ttaaaattac tcaaacccgc agtgcaatcg gtcgtctgcc
     9361 gaaacacaag gcaacgctgc ttggcctggg tctgcgtcgt attggtcaca ccgtagagcg
     9421 cgaggatact cctgctattc gcggtatgat caacgcggtt tccttcatgg ttaaagttga
     9481 ggagtaagag atgcgtttaa atactctgtc tccggccgaa ggctccaaaa aggcgggtaa
     9541 acgcttgggt cgtggtatcg gttctggcct cggtaaaacc ggtggtcgtg gtcacaaagg
     9601 tcagaagtct cgttctggcg gtggcgtacg tcgcggtttc gaggggggtc agatgcctct
     9661 gtaccgtcgt ctgccgaaat tcggcttcac ttctcgtaaa gcagcgatta cagccgaagt
     9721 tcgtctgtct gacctggcta aagtagaagg cggtgttgta gacctgaaca cgctgaaagc
     9781 ggctaacatt atcggtatcc agatcgagtt cgcgaaagtg atcctggctg gcgaagtaac
     9841 gactccggta actgttcgtg gcctgcgtgt tactaaaggc gctcgtgctg ctatcgaagc
     9901 tgctggcggt aaaatcgagg aataagtagc agatggctaa acaaccggga ttagattttc
     9961 aaagtgccaa aggtggctta ggcgagctga aacgcagact gctgtttgtt atcggtgcgc
    10021 tgattgtgtt ccgtattggc tcttttattc cgatccctgg tattgatgcc gctgtacttg
    10081 ccaaactgct tgagcaacag cgaggcacca tcattgagat gtttaacatg ttctctggtg
    10141 gtgctctcag ccgtgcttct atctttgctc tggggatcat gccgtatatt tcggcgtcga
    10201 tcattatcca gctgctgacg gtggttcacc caacgttggc ggaaattaag aaagaagggg
    10261 agtctggtcg tcgtaagatc agccagtaca cccgctacgg tactctggtg ctggcaatat
    10321 tccagtcgat cggtattgct accggtctgc cgaatatgcc tggtatgcaa ggcctggtga
    10381 ttaacccggg ctttgcattc tacttcaccg ctgttgtaag tctggtcaca ggaacgatgt
    10441 tcctgatgtg gttgggcgaa cagatcactg aacgaggtat cggcaacggt atttcaatca
    10501 ttatcttcgc cggtattgtc gcgggactcc cgccagccat tgcccatact atcgagcaag
    10561 cgcgtcaagg cgacctgcac ttcctcgtgt tgctgttggt tgcagtatta gtatttgcag
    10621 tgacgttctt tgttgtattt gttgagcgtg gtcaacgccg cattgtggta aactacgcga
    10681 aacgtcagca aggtcgtcgt gtctatgctg cacagagcac acatttaccg ctgaaagtga
    10741 atatggcggg ggtaatcccg gcaatcttcg cttccagtat tattctgttc ccggcgacca
    10801 tcgcgtcatg gttcgggggc ggtactggtt ggaactggct gacaacaatt tcgctgtatt
    10861 tgcagcctgg gcaaccgctt tatgtgttac tctatgcgtc tgcaatcatc ttcttctgtt
    10921 tcttctacac ggcgttggtt ttcaacccgc gtgaaacagc agataacctg aagaagtccg
    10981 gtgcatttgt accaggaatt cgtccgggag agcaaacggc gaagtatatc gataaagtaa
    11041 tgacccgcct gaccctggtt ggtgcgctgt atattacctt tatctgcctg atcccggagt
    11101 tcatgcgtga tgcaatgaaa gtaccgttct acttcggtgg gacctcactg cttatcgttg
    11161 ttgtcgtgat tatggacttt atggctcaag tgcaaactct gatgatgtcc agtcagtatg
    11221 agtctgcatt gaagaaggcg aacctgaaag gctacggccg ataattggtc gcccgagaag
    11281 ttacggagag taaaaatgaa agttcgtgct tccgtcaaga aattatgccg taactgcaaa
    11341 atcgttaagc gtgatggtgt catccgtgtg atttgcagtg ccgagccgaa gcataaacag
    11401 cgccaaggct gattttttcg catatttttc ttgcaaagtt gggttgagct ggctagatta
    11461 gccagccaat cttttgtatg tctgtgcgtt tccatttgag tatcctgaaa acgggctttt
    11521 cagcatggaa cgtacatatt aaatagtagg agtgcatagt ggcccgtata gcaggcatta
    11581 acattcctga tcataagcat gccgtaatcg cattaacttc gatttatggc gtcggcaaga
    11641 cccgttctaa agccatcctg gctgcagcgg gtatcgctga agatgttaag atcagtgagc
    11701 tgtctgaagg acaaatcgat acgctgcgtg acgaagttgc caaatttgtc gttgaaggtg
    11761 atctgcgccg tgaaatcagc atgagcatca agcgcctgat ggatcttggt tgctatcgcg
    11821 gcttgcgtca tcgtcgtggt ctcccggttc gcggtcagcg taccaagacc aacgcacgta
    11881 cccgtaaggg tccgcgcaaa ccgatcaaga aataatcggg gtgattgaat aatggcaaag
    11941 gcaccaattc gtgcacgtaa acgtgtaaga aaacaagtct ctgacggcgt ggctcatatc
    12001 catgcttctt tcaacaacac catcgtgact atcactgatc gtcagggtaa cgcgttgggt
    12061 tgggcaacag ccggtggttc cggtttccgt ggttctcgca aatccactcc gtttgcagct
    12121 caggttgcag cagagcgttg cgctgacgcc gtgaaagaat acggcatcaa gaatctggaa
    12181 gttatggtta aaggtccggg tccaggccgc gaatctacta ttcgtgctct gaacgccgca
    12241 ggtttccgca tcactaacat tactgatgtg actccgatcc ctcataacgg ttgtcgtccg
    12301 ccgaaaaaac gtcgcgtata acgcctcgtt ttccaggttt gttggagaaa gaaaatggca
    12361 agatatttgg gtcctaagct caagctgagc cgtcgtgagg gcaccgactt attccttaag
    12421 tctggcgttc gcgcgatcga taccaagtgt aaaattgaac aagctcctgg ccagcacggt
    12481 gcgcgtaaac cgcgtctgtc tgactatggt gtgcagttgc gtgaaaagca aaaagttcgc
    12541 cgtatctatg gtgtgctgga gcgtcagttc cgtaactact acaaagaagc agcacgtctg
    12601 aaaggcaaca ccggtgaaaa cctgttggct ctgctggaag gtcgtctgga caacgttgta
    12661 taccgtatgg gcttcggtgc cactcgtgca gaagcacgtc agctggttag ccataaagca
    12721 attatggtaa acggtcgtgt tgttaacatc gcttcttatc aggttagtcc gaatgacgtt
    12781 gtaagcattc gtgagaaagc gaagaagcag tctcgcgtga aagccgctct ggagctggct
    12841 gagcagcgtg aaaagccaac ttggctggaa gttgatgctg gcaagatgga aggtacgttt
    12901 aagcgtaagc cggagcgttc tgatctgtct gcggacatta acgaacacct gatcgtcgag
    12961 ctttactcca agtaaagctt agtaccaaag agaggacaca atgcagggtt ctgtgacaga
    13021 gtttctaaaa ccgcgcctgg ttgatatcga gcaagtgagt tcgacgcacg ccaaggtgac
    13081 ccttgagcct ttagagcgtg gctttggcca tactctgggt aacgcactgc gccgtattct
    13141 gctctcatcg atgccgggtt gcgcggtgac cgaggttgag attgatggtg tactacatga
    13201 gtacagcacc aaagaaggcg ttcaggaaga tatcctggaa atcctgctca acctgaaagg
    13261 gctggcggtg agagttcagg gcaaagatga agttattctt accttgaata aatctggcat
    13321 tggccctgtg actgcagccg atatcaccca cgacggtgat gtcgaaatcg tcaagccgca
    13381 gcacgtgatc tgccacctga ccgatgagaa cgcgtctatt agcatgcgta tcaaagttca
    13441 gcgcggtcgt ggttatgtgc cggcttctac ccgaattcat tcggaagaag atgagcgccc
    13501 aatcggccgt ctgctggtcg acgcatgcta cagccctgtg gagcgtattg cctacaatgt
    13561 tgaagcagcg cgtgtagaac agcgtaccga cctggacaag ctggtcatcg aaatggaaac
    13621 caacggcaca atcgatcctg aagaggcgat tcgtcgtgcg gcaaccattc tggctgaaca
    13681 actggaagct ttcgttgact tacgtgatgt acgtcagcct gaagtgaaag aagagaaacc
    13741 agagttcgat ccgatcctgc tgcgccctgt tgacgatctg gaattgactg tccgctctgc
    13801 taactgcctt aaagcagaag ctatccacta tatcggtgat ctggtacaac gtaccgaggt
    13861 tgagctcctt aaaacgccta accttggtaa aaaatctctt actgagatta aagacgtgct
    13921 ggcttcccgt ggactgtctc tgggcatgcg cctggaaaac tggccaccgg caagcatcgc
    13981 tgacgagtaa ccggatcaca ggttaaggtt ttactgagaa ggataaggtc atgcgccatc
    14041 gtaagagtgg tcgtcaactg aaccgcaaca gcagccatcg ccaggctatg ttccgcaata
    14101 tggcaggttc actggttcgt catgaaatca tcaagacgac tctgcctaaa gcgaaagagc
    14161 tgcgccgcgt agttgagccg ctgattactc ttgccaagac tgatagcgtt gctaatcgtc
    14221 gtctggcatt cgcccgtact cgtgataacg agatcgtggc aaaactgttt aacgaactgg
    14281 gcccgcgttt cgcgagccgt gccggtggtt acactcgtat tctgaagtgt ggcttccgtg
    14341 caggcgacaa cgcgccgatg gcttacatcg agctggttga tcgttcagag aaagcagaag
    14401 ctgctgcaga gtaatctgaa gcaacgtaaa aaaacccgcc ccggcgggtt tttttatacc
    14461 cgtagcatcc ccacttatct acaatagctg tactcttttt gttcatcccc tggagtattt
    14521 atgtggttac ttgaccagtg ggcagagcgt catatagcag aagcgcaagc gaaaggtgag
    14581 tttgataatc tggcaggtag cggcgaacca ttgatactgg atgatgattc tcatgtgcca
    14641 ccggaattac gtgcggggta tcgcttgctg aagaatgctg gttgcttacc gccagaactt
    14701 gagcagcgga gggaagcaat tcagcttctg gatatcctga gaggtatccg tcacgatgat
    14761 ccgcaatatc aagaggttag ccgtcgattg tcattactgg aattgaagct gcgacaagct
    14821 ggatttagta ccgatttttt acgcggcgat tatgctgaca agttgttgga caaaatcaac
    14881 gataactagt ggagtatgta tgtatcgcat tggtgagctg gcaaaaatgg cggaagtaac
    14941 acctgacacg attcgttatt acgaaaaaca gcagatgatg gagcatgaag tgcgtactga
    15001 aggcgggttt cgcctgtata ccgaaagcga tctccagcga ttgaaattta tccgccatgc
    15061 cagacaacta ggtttcagtc tggagtcgat ccgcgagttg ctgtcgatcc gcatcgatcc
    15121 tgaacaccat acctgtcagg agtcaaaagg cattgtgcag gaaagattgc aggaagtcga
    15181 agcacggata gccgagttgc agagtatgca gcgttccttg caacgcctta acgatgcctg
    15241 ttgtgggacc gcccatagca gtgtttattg ttcgattctt gaagctcttg aacaaggggc
    15301 gagtggcgtt aagagtggct gttgattttt tgcactggca ggattacact cgcgccgtaa
    15361 aataaccaat tggagttttt atgagccgat atcagcatac taaagggcag ataagggata
    15421 atgcgataga agcattacta catgatccct tattccgaca gcgcgtagag aaaaataaga
    15481 aggggaaagg cagttacatg cgaaaaggaa aacatggcaa tcgggggaac tgggaggcca
    15541 gtggcaagaa agtaaatcac ttttttacca ctggtcttct gctttcaggc gcttgttaag
    15601 agcggttatt ctgctctttc agcaaatcac gaatttctgc cagtaatact tcttctttag
    15661 ttggtgcagg tgcggcagct ggttcttctt ttttccgatt cagtttgttg attagcttaa
    15721 tcgccataaa gatggcaaag gccacaatca gaaaatcaaa gacgttttga atgaagacac
    15781 cgtaatgcat cacaacagca gggatatccc cctgcgcatc gcgtagcgtg acagcaaact
    15841 gtttaaagtc gatcccgcca attaataagc ccagaggtgg catgatgata tcggcaacca
    15901 gtgaagatac aatcttcccg aatgccgcac cgataatgac acccaccgcc aaatccacca
    15961 cgttcccgcg catcgcaaat tcgcgaaatt ctttaataat gctcatgtta ttctccctat
    16021 gaagccgaca accataagtc taacaaatgt taagccattt tcctgccagg aatgaattta
    16081 attaatcctt gataatcaaa gggaaataat aaggcgtcat tagacgcctt attaattaca
    16141 agaagaaagg gcttggctgg aagagtcttt cgacgtcggt aataaacttt ttatctgtga
    16201 ggaacataat tacgtgatcg ccttgctcaa tgcgcagatt gtcattggca atcatcacgt
    16261 cgtttccacg taccaccgct ccaataatcg ttcctggcgg tagcttgatt tcgtcaatga
    16321 ctctgccgac aacgcgtgag gtgctttcat caccgtgagc aacggcttca atagcttctg
    16381 ctacgccgcg gcgcaatgag gaaacaccaa caatatctgc ttttcgcaca tggctaagca
    16441 acgcagaaat agttgcttgt tgtggtgaaa ttgcaatatc gatcacgctc ccctgaacca
    16501 gatccacata agcgcgacgc tggatcaata ccatcacctt tttcgcaccc atacgtttgg
    16561 caagcatggc ggacatgata ttggcctcgt catcgttggt gacggcaata aacagatcaa
    16621 cttgatcgat atgttcttcg gccagcagtt cttgatccga cgcatcacca aaaaagacga
    16681 tcgtattctg caacttttcc gccagttcgg cagcgcgctg ctgattacgt tcgatgagtt
    16741 taacgctgta atctttttcc agacgacgcg ccagccctgc accgatatta ccgccaccaa
    16801 ccagcatgat ccgcttatac ggtttttcca gtcgctgtaa ttcactcatc accgcgcgga
    16861 tatgctgtga agcggcaata aagaacactt catcaccagc ttcaacaatg gtcgaacctt
    16921 gtggacgaat ggggcgatcg tggcggaaaa ttgctgccac acgagtatcg atatgtggca
    16981 tatgttcgcg catggtcgaa agtgcattac caatcagcgg gccgccataa taggctttaa
    17041 ctacagcgag gctgacttta ccctcagcga agttcaccac ctgcaatgcg cctggatact
    17101 caatcagtcg gtaaatatta tcgataacca actgctctgg tgcgatcaga tgatcaatcg
    17161 gtacagcatc tgaatgaaat agcttatcgg catcgcgtac gtagtctggt gagcggatgc
    17221 gagcgatgcg attaggggtg ttgaaaagtg agtaggctac ctggcaggca accatattgg
    17281 tttcatctga actggttaca gcaaccagca tatcggcgtc gtcggcacct gcctcccgca
    17341 atacgcgtgg atgagagcca tgcccctgca cgactcgcag gtcaaattta tcctgcaagg
    17401 tccgcagacg ctcaccgttg gtatcgacaa cagtaatatc gttgttctcg ccaaccaggt
    17461 tttccgccag tgtgccgcca acctggccgg cacccagaat gataattttc atcagtctcg
    17521 acccgttatc tcatcacttt ttgattagct tagcgtaaaa gaagccgtcg ccctcttcgg
    17581 caccaggcag attttgttta cccggttgct ctggtgttcc tgtttcgcaa agttcggcat
    17641 cagcggtacg ttgcaaaaaa gctttaatct gcaggctatt ctcttccggt aacaccgaac
    17701 aggtggcata gaccagggtt ccaccggatt ttaaatgcgg ccaaatggcg tcgagaattt
    17761 cagactgcaa ttgcgcgagt tccgggatat cgcgatcgcg acgtaaccat ttaatatccg
    17821 gatggcgacg aatcaccccc gttgctgaac aaggcgcatc taataaaatg cgatcaaact
    17881 gttgctcgcc acaccattgg gaagggtaac ggccatcacc ttgtttcacg gttgccttca
    17941 taccaaggcg ttttaaattg tcgtaaacgc gagagaggcg ctgttcgtca atatcaaccg
    18001 caacaacctg cgcttctggt gccacctcaa ggatatgcgt tgttttaccg ccgggggcgg
    18061 cacaaagatc cagaatgtgt tcaccgtttt gtggcgcaag ccaggtcatg caaccttgtg
    18121 ctgatgcatc ctgaacggta acccatccgt cttcaaaacc aggtagcgca tgaacaggtg
    18181 caggtgtttc cagacgtaca gcatcagggt aatccgcatg cgggaaacct ttcattcctg
    18241 cttcatccag caatgcaagc cagctgtcgc gggaatgatg cgtacgatta acgcgcagcc
    18301 acattggcgg acgctggtta ttggcttcga cgatggattg ccactgctct ggatacgctt
    18361 tttgcagacg cttcagcaac caggaaggat gcagataacg tgcatcactg gcattaaact
    18421 tggctaataa ctcttcttgc tgacgctgga actggcgtaa tacaccgtta atcaaccctt
    18481 taagttgcgg acgcttaatt gcgatagcgc cttcaaccgt ttcagccagc gcagcatgag
    18541 gtggaatgcg ggtataaagc agttgataca aaccaaccat aatcaggtaa tgcacagtgc
    18601 gctgtttgcc ggtcatcgga cgggccatta acttattaat cagccagtct aactgcgaaa
    18661 gcgtacgcag tacgccaaag cacaactctt gaagaagtgc tttgtcttta tcagaaactt
    18721 tttgctggag cggtggcaga atgttgctta atgattgccc ttgctcgacg acttgttcaa
    18781 cggcctgggc cgccatgcta cgtaaattac gttgtttttt cataagtata aaaatgcccg
    18841 gtaagaccgg gcttagaaga gtggactatc aggccagacg gttgcccgga acaaaccatt
    18901 cccgacgaga attcaggagg tcttgcgcgc tcatcgcttt cttacccgca ggttgtaacg
    18961 agagcagatt caggattcca tcaccagttg caacctgaat gccttgtttg ttggcttcaa
    19021 ggatcgttcc tggtgcagcg ttggttgccg tatcaatgac cgacgctttc cagactttaa
    19081 ccggctgtct ttcaatttcc agccagctca ttggccatgg attgaaagcg cgaatgtagc
    19141 gttcaagctg tgctgccgaa agtgaccagt caatacgcgc ttcttcttta ctcaactttt
    19201 cggcgtaagt gacaagagtt tcgtcctgaa cttctggttt cgccgtgccg tctgccagtt
    19261 gtttcaacgt ggtgataagc ccttgtgggc caagctctgc cagcttgtcg tacagcgtac
    19321 cactggtatc ttctgcagta atcgggcagg agagcttata gagcatgtca ccggtgtcta
    19381 aaccgacatc catttgcata atggtcacac cagtttctgc atcacccgcc catagtgagc
    19441 gttggattgg tgcagcaccg cgccagcgtg gcagcagtga accatgaacg ttgatacagc
    19501 caagacgcgg catctccagc actgctttag gcagaattaa gccataggcg acgacgacca
    19561 taacatcagc ctgcagatcg gcgaccagtt gctggttttc ttgtggacgc agggaaacag
    19621 gttgaaaaac gggcagacct ttttcctcag ccagaacttt aaccgggctg ggcatcagtt
    19681 ttttaccgcg tcctgccggt cggtctggct gggtgaacac gccaacgacg ttatgaccag
    19741 aagacaacag cgcgtcgaga tgacgcgctg caaagtcagg tgtacccgca aaaataatac
    19801 gtagtgattc tgacacgtta gttcttatcc ttaagcccgg gctttcagac gatccagttt
    19861 ttcaactttc tgacgaatac gttgttgttt caacggtgac agataatcca taaacagttt
    19921 gccgaccagg tgatccatct catgctgaat acagatggct aacagaccgt ctgcttccaa
    19981 ttcaaatggt ttaccgtcgc ggtccagggc gcgaatttta actttctctg cgcgtggcac
    20041 taaagcacgt tgttcaggga tcgacaggca accttcttca atgcctgttt cgccgctttt
    20101 ttctaaaagc tccggattga ttaacaccag ccgttcgtca cggttttccg aaacatcaat
    20161 aacaatgata cgttgatgga tatcaacctg ggttgccgcc aggccaatac cttcttctgc
    20221 gtacatcgtc tcgaacatat catcgacgat acgctgaatt tctgcattca cttcttctac
    20281 cggtttagca actttgcgaa gccgctcgtc cggaatatgt aacacttgca aaactgacat
    20341 aaatctccag agatgtgttc aggagttaga aagattattt cttctattct agacaaatcc
    20401 ccctctgatt gacagcatca ctgaccaatc gcaaagattg ctaaggctgc ttatggcagg
    20461 gagataagga tggtcgatac agatatttgg ctgcgtttaa tgagcatcag cagcttgtac
    20521 ggcgatgata tggtccgtat agctcactgg ctggcaaaac agtcgcatat tgatgcggtt
    20581 gtattgcagc aaacagggct tacattgcgg caggcacaac gctttctttc atttccgcga
    20641 aagagtatcg aaagctcact ttgttggttg gagcaaccca accatcattt aatccctgcg
    20701 gacagcgaat tttatcctcc tcaacttctg gcgacgacag attaccccgg cgcactgttt
    20761 gttgaaggag aactgtacgc gctgcattca tttcagcttg ccgtagtggg gagtcgggcg
    20821 cattcatggt atggcgagcg atggggacga ttattttgcg aaactctggc cacgcgtgga
    20881 gtgacaatta cgagtggact ggcgcgtgga atcgatggtg tggcgcataa agcggcctta
    20941 caggtaaatg gcgtcagcat tgctgtattg gggaacggac ttaataccat tcatccgcgc
    21001 cgccatgccc gactggctac cagtttgctt gaacatggtg gggcacttgt ctcggaattt
    21061 cccctcgatg tttcacccct tgcttacaat ttcccacgaa gaaatcgcat tatcagtggt
    21121 ctaagtaaag gtgtactggt ggtggaagcg gctttgcgca gtggttcgtt ggtgacagca
    21181 cgttgtgcgc ttgagcaggg gcgtgaagtt tttgccttgc caggaccaat agggaatccg
    21241 ggaagcgaag ggcctcactg gttaataaaa caaggtgcga ttcttgtgac ggaaccggaa
    21301 gaaattctgg aaaacttgca atttggattg cactggttgc cagacgcccc tgaaaattca
    21361 ttttattcac cagatcagca agacgtggca ttgccatttc ctgagctcct ggctaacgta
    21421 ggagatgagg taacacctgt tgacgtcgtc gctgaacgtg ccggccaacc tgtgccagag
    21481 gtagttactc aactactcga actggagtta gcaggatgga tcgcagctgt acccggcggc
    21541 tatgtccgat tgaggagggc atgccatgtt cgacgtacta atgtatttgt ttgaaaccta
    21601 tattcacaca gaagctgagt tgcgtgtgga tcaagacaaa cttgaacagg atcttaccga
    21661 cgcaggattt gatcgagaag atatctacaa tgccctgctt tggctggaaa agcttgcgga
    21721 ttatcaggaa ggactgacag aaccgatgca actggcctct gatccactct ccatgcgtat
    21781 ttatacccct gaggagtgtg aaagactgga tgccagctgt cgtggttttc tgcttttcct
    21841 tgagcaaatt caggtgctta accttgaaat ccgtgaaatg gtgatagagc gagtgctcgc
    21901 gctggatacc gcagagttcg acctggaaga cctgaaatgg gtaatcctga tggtgttgtt
    21961 caatattccg ggctgcgaaa atgcgtacca gcaaatggaa gaattactct ttgaagtgaa
    22021 tgaaggtatg ctgcattaat catttcttta attcagcata agttgttatg gcgaaatcag
    22081 cactgttcac ggtgcgtaat aatgagtcct gcccaaagtg cggggctgaa ctggttattc
    22141 gatccgggaa acacggtccg tttcttggat gctcacagta tccggcgtgt gactacgtcc
    22201 gtcctctgaa atcttcagcg gatggacata ttgtcaaagt tctggagggg caggtttgcc
    22261 ctgcatgtgg cgcaaatctg gtattacgcc agggacgctt tggtatgttt attggttgca
    22321 gtaactaccc tgaatgcgaa cataccgaac ttatcgataa accggacgaa acagcaatta
    22381 catgccccca atgtcggacg ggccatctgg tccagcgccg ctcccgttat ggcaaaacat
    22441 ttcactcctg tgatcgctac ccggagtgtc aatttgccat taacttcaaa cccatagctg
    22501 gagaatgccc tgagtgtcat tatccactac tcatcgaaaa gaaaaccgcg cagggtgtaa
    22561 aacacttttg tgccagtaaa caatgtggaa agccggtttc ggcggaataa taacgtgaat
    22621 aataacctgc aaggagacgc tatcgcagct gcgatagatg tcctcaatga agaacgtgtc
    22681 atcgcctatc caacggaagc cgttttcggt gttgggtgcg atcctgatag cgaaacagca
    22741 gtgatgagac tgttggagtt aaaacagcgt ccggttgata aggggctgat tttaatcgcg
    22801 gcaaattacg agcagcttaa accctatatt gatgacacca tgctgactga tgcgcagcgt
    22861 gaaaccattt tttcccgctg gccaggtcct gtcacctttg tctttcccgc gcctgcgaca
    22921 acaccgcgct ggttgacggg ccgctttgat tcgcttgctg tacgagtcac cgaccatccg
    22981 ttggtggttg ctttgtgcca ggcttatggt aaaccgctgg tttctaccag tgccaacttg
    23041 agtggattgc caccttgtcg aacagtagac gaagttcgcg cacaatttgg cgcggcgttc
    23101 ccggttgtgc ttggtgaaac gggggggcgt ttaaatcctt cagaaatccg cgatgccctg
    23161 acgggtgaac tgtttcgaca ggggtaacat aatggaaacc tatgctgttt ttggtaatcc
    23221 gatagcccac agcaaatcgc cattcattca tcagcaattt gctcagcaac tgaatattga
    23281 acatccctat gggcgcgtgt tggcacccat caatgatttc atcaacacac tgaacgcttt
    23341 ctttagtgct ggtggtaaag gtgcgaatgt gacggtacct tttaaagaag aggcttttgc
    23401 cagagcggat gagcttactg aacgggcagc gttggctggt gctgttaata ccctcaagcg
    23461 gttagaagat ggacgcttgc agggtgacaa taccgatggt ataggtttgt taagcgatct
    23521 ggaacgtctg tcttttatcc gtccgggttt acgtattctg cttatcggcg ctggtggagc
    23581 atctcgcggc gtactactac cactcctttc cctggactgt gcggtgacaa tcactaatcg
    23641 gacggtatcc cgtgcggaag agttggctaa attgtttgcg cacactggca gtattcaggc
    23701 gttgggtatg gacgaactgg aaggtcatga gtttgatctc attattaatg caacatccag
    23761 tggcatcagt ggtgatattc cggcgatccc gtcatcgctc attcatctag gcatttattg
    23821 ctatgacatg ttctatcaga aaggaaaaac tccttttctg gcatggtgtg agcagcgagg
    23881 ctcaaagcgt aatgctgatg gtttaggaat gctggtggca caggcggctc atgcctttct
    23941 tctctggcac ggtgttctgc ctgacgtaga accagttata aagcaattgc aggaggaatt
    24001 gtccgcgtga atcaggccat ccagtttccg gacagggaag agtgggacga gaataaaaaa
    24061 tgtgtatgtt ttcccgctct cgtgaatggt atgcaactga catgcgcgat ctctggcgag
    24121 agtctggcgt atcgctttac tggagatacg ccagaacagt ggttagcgag ttttcgtcag
    24181 catcgctggg acctggaaga agaagcggaa aacttaattc aggaacaaag tgaagatgat
    24241 caaggctggg tctggttacc ctgatccaga tattcgtcct tccatttcac gtaattattc
    24301 gcggaatagc gtaacccagc cttctcttca tcacttaacg ggcggatctg tttgacgggg
    24361 ctaccgagat acagatatcc gctctccagc cgtttatttt gtgggaccag actacccgca
    24421 ccaatcatca catcatcttc tactattgcg ccatcaagta aaattgagcc catcccaacc
    24481 aaaactcgat tgccaatggt gcagccgtgg agcatcacct tgtgaccaac agtgacatct
    24541 tcgccaatgg ttaatgggtt gccatctggg ttgtacgagg atttatgagt gacatgcaac
    24601 atactgccat cctggatatt ggtgcgtgct ccgatctgta cataatgtac atctccacga
    24661 atcacaacga gcggccagat ccccacatca tcagccagac gaacgccacc aatcacgaca
    24721 ctgctatcgt cgatcattac gcgctgaccg atttgtggaa aaagatcgcg gtatgggcgt
    24781 aaaacatcag acatacttac ctcagcaata aatgatttac taatgacttt gggggcatta
    24841 ttggccttgt gcaagtcttt tagtatgcaa aaaagcaccg ttttgtgtgc gattgcagca
    24901 aaaagggtga aaaaacaaca aacagaaaaa aagatcaaaa aaatacttgt gcaaaatatt
    24961 gggatcccta taatgcgcct ccgttaagac gacaacgtga aacacttcac aggatggtcg
    25021 gaacaacgaa gagaaaaaat cctgaaattc agggttgact ctgaaagagg aaagcgtaat
    25081 atacgccacc tcgcgacagt gagctgaaag ccgcgtcgca actgctcttt aacaatttat
    25141 cagacaatct gtgtgggcac tcgaagatac ggattcttaa cgtcgcaaga cgaaaaatga
    25201 ataccaagtc tcaagagtga
//
LOCUS       DAJVUP010000045        25109 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.045, whole genome shotgun sequence.
ACCESSION   DAJVUP010000045 DAJVUP010000000
VERSION     DAJVUP010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25109
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.045"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..383
                     /gene="hyfA"
                     /locus_tag="OQQ75_001714"
     CDS             <1..383
                     /gene="hyfA"
                     /locus_tag="OQQ75_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfA"
                     /protein_id="HCS1976086.1"
                     /translation="SLCIGCKLCAVVCPFGAISASGSRPVNAPAQYVFQADGSLKDGE
                     ENAPTQHALLRWEPGVQTVAVKCDLCNFLPEGPACVRACPNQALRLITDDSLQRQMKE
                     KQRLAASWFANGGEDPLSLTQEQH"
     gene            383..2399
                     /gene="hyfB"
                     /locus_tag="OQQ75_001715"
                     /pseudo
     CDS             383..2399
                     /gene="hyfB"
                     /locus_tag="OQQ75_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311371.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit B"
     gene            2410..3357
                     /gene="hyfC"
                     /locus_tag="OQQ75_001716"
     CDS             2410..3357
                     /gene="hyfC"
                     /locus_tag="OQQ75_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfC"
                     /protein_id="HCS1976087.1"
                     /translation="MRQTLCDGYLVIFALAQAVILLLLTPLFTGISRQIRARMHSRRG
                     PGIWQDYREIHKLFKRQEVAPISSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGG
                     GDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIA
                     GSTHIEMISNTLATGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTE
                     YSGAGLALAKWGLGLKQVVMAALFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFV
                     LASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL"
     gene            3374..3484
                     /locus_tag="OQQ75_001717"
     CDS             3374..3484
                     /locus_tag="OQQ75_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoin racemase"
                     /protein_id="HCS1976088.1"
                     /translation="MENLALTTLMLPFIGALVVSFSPQRRAAEWGFCSPH"
     gene            3496..4603
                     /locus_tag="OQQ75_001718"
                     /pseudo
     CDS             3496..4603
                     /locus_tag="OQQ75_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001442177.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit D"
     gene            4615..5265
                     /gene="hyfE"
                     /locus_tag="OQQ75_001719"
     CDS             4615..5265
                     /gene="hyfE"
                     /locus_tag="OQQ75_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 membrane subunit"
                     /protein_id="HCS1976089.1"
                     /translation="MIGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSI
                     FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA
                     ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN
                     GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG"
     gene            5270..6850
                     /gene="hyfF"
                     /locus_tag="OQQ75_001720"
     CDS             5270..6850
                     /gene="hyfF"
                     /locus_tag="OQQ75_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit F"
                     /protein_id="HCS1976090.1"
                     /translation="MSYSVMFALLLLTPLLFSLLCFACRKRGLSATCTVTVLHSLGIT
                     LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGVYSIGYMRHEV
                     AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS
                     SLESAWKYIIICTVDVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLM
                     LLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII
                     CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVALGIGGP
                     LGIFAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL
                     ALAGMPPFNIFLSEFMTVTAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQ
                     AVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTW
                     HDFLPSGTASVSEKHSER"
     gene            6840..8555
                     /gene="hyfG"
                     /locus_tag="OQQ75_001721"
     CDS             6840..8555
                     /gene="hyfG"
                     /locus_tag="OQQ75_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfG"
                     /protein_id="HCS1976091.1"
                     /translation="MNVNSSSNSGEAILAALKTQFPGAVLDEERQTPEQVTITVKINL
                     LPDVVHYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSR
                     EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLHKDAMDYRL
                     RPEPTTDSETYAFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV
                     HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI
                     LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGG
                     VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPV
                     GPLIRGSGFARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA
                     LDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW
                     PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRN
                     RSPLK"
     gene            8565..9104
                     /gene="hyfH"
                     /locus_tag="OQQ75_001722"
     CDS             8565..9104
                     /gene="hyfH"
                     /locus_tag="OQQ75_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit H"
                     /protein_id="HCS1976092.1"
                     /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG
                     ACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKA
                     DLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLRAQASVCPECKQ
                     RATLINDDTDVPLVAKEQL"
     gene            9101..9859
                     /gene="hyfI"
                     /locus_tag="OQQ75_001723"
     CDS             9101..9859
                     /gene="hyfI"
                     /locus_tag="OQQ75_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfI"
                     /protein_id="HCS1976093.1"
                     /translation="MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGC
                     NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH
                     KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
                     QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDD
                     PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD"
     gene            9852..10265
                     /gene="hyfJ"
                     /locus_tag="OQQ75_001724"
     CDS             9852..10265
                     /gene="hyfJ"
                     /locus_tag="OQQ75_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 assembly chaperone HyfJ"
                     /protein_id="HCS1976094.1"
                     /translation="MTEECGEIVFWTLRKKFVASSDEMPEHRSQVMYYSLAIGHHVGV
                     IDCLNVAFRCPLTENEDWLAQVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFALLA
                     DDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA"
     gene            10295..12307
                     /gene="hyfR"
                     /locus_tag="OQQ75_001725"
                     /pseudo
     CDS             10295..12307
                     /gene="hyfR"
                     /locus_tag="OQQ75_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416986.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HyfR"
     gene            12329..13174
                     /locus_tag="OQQ75_001726"
                     /pseudo
     CDS             12329..13174
                     /locus_tag="OQQ75_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311381.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
     gene            complement(13212..14273)
                     /locus_tag="OQQ75_001727"
     CDS             complement(13212..14273)
                     /locus_tag="OQQ75_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS1976095.1"
                     /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV
                     AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD
                     MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL
                     TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL
                     EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGT
                     EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL
                     ATLIKAVIHAWPDGQIAQE"
     gene            14486..15949
                     /gene="bepA"
                     /locus_tag="OQQ75_001728"
     CDS             14486..15949
                     /gene="bepA"
                     /locus_tag="OQQ75_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-barrel assembly-enhancing protease"
                     /protein_id="HCS1976096.1"
                     /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADNADTLPDMGTSAGSTL
                     SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND
                     EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHLTQRHLARAMEDQQRSTPLT
                     WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD
                     PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL
                     AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP
                     LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP
                     QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL
                     SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM"
     gene            15970..16329
                     /gene="arsC"
                     /locus_tag="OQQ75_001729"
     CDS             15970..16329
                     /gene="arsC"
                     /locus_tag="OQQ75_001729"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311384.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HCS1976097.1"
                     /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT
                     LRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVAN
                     GKARIGRPPEQVLEIVG"
     gene            complement(16467..17213)
                     /gene="hda"
                     /locus_tag="OQQ75_001730"
     CDS             complement(16467..17213)
                     /gene="hda"
                     /locus_tag="OQQ75_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA inactivator Hda"
                     /protein_id="HCS1976098.1"
                     /translation="MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSS
                     LLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVP
                     EVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNL
                     GLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT
                     LFMTLDQLDRASITAQRKLTIPFVKEILKL"
     gene            complement(17263..18552)
                     /gene="uraA"
                     /locus_tag="OQQ75_001731"
     CDS             complement(17263..18552)
                     /gene="uraA"
                     /locus_tag="OQQ75_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HCS1976099.1"
                     /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA
                     TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC
                     LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII
                     ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL
                     YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI
                     SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM
                     GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM
                     ALATIVGIGLSLIFKLISVLRPEEVVLDAEEADITDK"
     gene            complement(18638..19264)
                     /gene="upp"
                     /locus_tag="OQQ75_001732"
     CDS             complement(18638..19264)
                     /gene="upp"
                     /locus_tag="OQQ75_001732"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HCS1976100.1"
                     /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT
                     ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY
                     RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV
                     AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK"
     gene            19588..20625
                     /gene="purM"
                     /locus_tag="OQQ75_001733"
     CDS             19588..20625
                     /gene="purM"
                     /locus_tag="OQQ75_001733"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HCS1976101.1"
                     /translation="MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGG
                     FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEP
                     LFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFC
                     VGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPL
                     ADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQW
                     PEVFNWLQTAGNVERHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIK
                     ASDSEQRVVIE"
     gene            20625..21263
                     /gene="purN"
                     /locus_tag="OQQ75_001734"
     CDS             20625..21263
                     /gene="purN"
                     /locus_tag="OQQ75_001734"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HCS1976102.1"
                     /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE
                     RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG
                     RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD
                     TEDDVTARVQTQEHAIYPLVISWFADGRLKIHENAAWLDGQRLPPQGYAADE"
     gene            21435..23501
                     /gene="ppk1"
                     /locus_tag="OQQ75_001735"
     CDS             21435..23501
                     /gene="ppk1"
                     /locus_tag="OQQ75_001735"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HCS1976103.1"
                     /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN
                     NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM
                     ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE
                     IIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD
                     ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL
                     REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD
                     AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN
                     GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV
                     RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ
                     NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM
                     CSLIPNPEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV
                     ATPLLDPHLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK
                     SLEQPE"
     gene            23506..25047
                     /gene="ppx"
                     /locus_tag="OQQ75_001736"
     CDS             23506..25047
                     /gene="ppx"
                     /locus_tag="OQQ75_001736"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HCS1976104.1"
                     /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR
                     VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL
                     KRVEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI
                     LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG
                     TIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLA
                     ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR
                     RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS
                     DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ
                     ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST
                     PEIAA"
BASE COUNT         5713 a         6575 c         6683 g         6138 t
ORIGIN      
        1 aaagcctctg tattggctgc aagctttgcg ccgtggtctg cccatttggc gcaatcagcg
       61 cttcaggaag ccgtccggtg aatgcccctg cgcaatatgt ttttcaggct gacggctcac
      121 tcaaagatgg cgaagaaaac gcgccgaccc aacatgcttt gctgcgctgg gaaccgggtg
      181 tccagaccgt cgcggtgaaa tgcgacctgt gtaatttctt gccagaaggt ccggcctgcg
      241 ttcgcgcttg cccgaatcag gcgttacggc tgattaccga cgatagcctg caacgtcaga
      301 tgaaagaaaa acagcgcctt gccgcaagct ggtttgccaa tggcggggag gatccccttt
      361 ccctcactca ggagcaacac taatggatgc cctgcaatta ttaacctggt cgctgatcct
      421 ctttctgttt gccagtctgg cttcgctgtt ttactcggtc tggacagact ggctattaag
      481 ctttccggca tcacatcgct ggtgggcggc gtgattggca tcatcagcgg aattacgcaa
      541 ttacatgctg gtgtaacttt agtcgcccgt tttgccaccc cttttgactt tgccgattta
      601 accctgcgaa tggatagcct ctcggtattt atggtgctgg ttatctcctt gctggtggtg
      661 gtttgttcgc tctattcatt gacttatatg cgcgaatacg agggcaaagg cgcggcggcg
      721 atgggcttct ttatgaatct tttcatcgca tcgatggttg ccctgctggt gatggacaac
      781 gctttttggt tcatcgtgct gtttgaaatg atgtcgctgt cttcctggtt tctggtcatt
      841 gccaggcagg ataaaacgtc gatcaacgct ggcatgctct acttttttat cgcccacgcc
      901 ggatcggtgc tgattatgat cgccttcttg ctgatggggc gcgaaagcgg cagcctcgat
      961 tttgccagtt tcgcacgctt tcactttctc cggggctggc gtcggcgatg tttctgctgg
     1021 cctttttcgg ttttggcgcg aaagccggga tgatgccgtt gcacagctgg ttgccgcgcg
     1081 ctcaccctgc cgcaccatcg cacgcttcgg cgttgatgtc tggcgtaatg gtcaaaatcg
     1141 gtattttcgg catcctgaaa gtagcgatgg atctgctggc gcaaacgggt ttgcctctgt
     1201 ggtggggcat tctggtgatg gcgatcggcg caatctccgc gctcctgggc gtgctatatg
     1261 cgctggcgga acaggatatc aaacggctgc tggcctggag taccgtcgaa aacgtcggca
     1321 ttattttgct ggcagtcggt gtggcgatgg acggtctgtc actgcacgac ccgctgctca
     1381 ccgtggttgg actgctcggc gcactgtttc atctgctcaa ccatgcgctg ttcaaagggc
     1441 tgctatttct cggcgcgggc gcgattattt cgcgtttgca tacccacgac atggaaaaaa
     1501 tgggggcact ggcgaaacgg atgccgtgga cagccgcagc atgcctgatt ggttgcctcg
     1561 cgatatcagc cattcctccg ctgaatggtt ttatcagcga atggtacacc tggcagtcgc
     1621 tgttctcact aagtcgtgtg gaagccgtag cgctacaact tgcgggtcct attgctatgg
     1681 taatgctggc agtcactggt gggctggcag taatgtgctt cgtcaaaatg tacggtatta
     1741 ctttctgtgg tgcgccgcgc agtacacacg ctgaagaggc acaggaagtg ccaaatacga
     1801 tgatcgtcgc catgctactg ctcgcggcac tctgcgtatt aattgcgctt agtgccagtt
     1861 ggctggcacc gaagataatg catattgccc atgcgtttac caatacccct cccgtcactg
     1921 tcgccagcgg aatagcactt gtacccggca cgtttcatac acgggtcact ccttcattac
     1981 tgttgctgtt actactggcg atgcctttgc tgcctggcct ttactggctg tggtgtcgtt
     2041 cgcgccgcgc agcgtttcgt cgcacaggag atgcctgggc atgcggctac ggctgggaaa
     2101 acgcgatggc tccgtcaggc aatggcgtga tgcagccgct gcgtgtggtc ttctctgcgt
     2161 tatttcgtct acgacaacag ctcgacccta cgctgaggct aaataaagat cttgcgcacg
     2221 tcaccgccag ggctcagagc acagaaccct tctgggatga gcgggtgatc cgccccatcg
     2281 tgagcgccac ccaacggctg gccaaagaaa tacagcatct gcaaagcggc gactttcgtc
     2341 tctattgcct gtatctagtt gccgcactgg ttgtgctgct aatcgctatt gccgtctaag
     2401 gaaatcacca tgagacaaac tctttgcgac ggatatctgg tcatttttgc gttagcacag
     2461 gccgtgattc tgctgctgct aaccccgctt tttacgggta tttcccggca gatacgcgcg
     2521 cgtatgcact cccgccgcgg gccggggatc tggcaggatt atcgcgagat ccacaaactg
     2581 tttaaacgcc aggaagttgc gcctatatct tcaggtctga tgttccgcct gatgccgtgg
     2641 gtattaatca gcagcatgct ggtgctggcg atggccctac cactttttat taccgtttcc
     2701 ccttttgcgg gcggcggcga tctgatcacc cttatctatc ttcttgccct gtttcgtttt
     2761 ttctttgctc tttccggact ggataccgga agcccgtttg cgggagtcgg tgccagtcgc
     2821 gagttgacgc tcggcattct ggtcgaaccc atgctcattc tctcactgct ggtattggcg
     2881 ctgatagcag gttccacgca tatcgagatg atcagcaata cgctggcaac gggctggaac
     2941 tcgccgctaa ccaccgtact ggcgttactg gcctgtggtt ttgcctgctt cattgagatg
     3001 ggaaaaattc cctttgatgt tgctgaagca gaacaggaat tacaggaagg cccgctgacc
     3061 gaatattccg gtgccgggct ggcgctagcg aaatgggggc tggggctgaa acaggtcgtg
     3121 atggcagcac tgtttgtggc cctgtttctg ccctttgggc gcgcgcaaga actttctctc
     3181 gcctgcctgc tgacttcact tgtcgttacg ctgctcaagg ttttgctgat ttttgtactg
     3241 gcctcaatcg cagaaaacac gctggcacgc gggcgttttt tactcattca ccatgtgacc
     3301 tggcttggct tcagccttgc tgcgcttgca tgggtcttct ggttaaccgg tctgtaagga
     3361 gcactgacgg aatatggaaa atcttgctct gacgacgtta atgctgcctt ttatcggcgc
     3421 actggtcgtt tcgttttcgc cacaacgtcg ggccgccgaa tgggggtttt gttcgccgca
     3481 ctgaccacgc tgtgcatgtt gtcgctgatc tccgcgtttt atcaggccga taaagttgcc
     3541 gtcacgttga cgttggtcaa cgtgggggat gtggcattgt ttggcctggt cattgatcgc
     3601 gtgagtacgc tgattctgtt tgtggtggtg tttctcggtt tgctggtcac gatctactcc
     3661 acgggttatc tgacggataa aaatcgcgaa cacccgcata acggcacgaa tcgttattac
     3721 gcatttttgc tggtgtttat cggcgcgatg gcgggactgg tactctcctc gacgctgctc
     3781 ggtcagttgt tgttttttga aattagggcg gctgctcctg ggcgttgatc agttattacc
     3841 agagcgataa agcgcagcgt tcaacactaa aagcgttgct tatcacccat atcggttcgt
     3901 tggggttgta tcttgccgcc gccacgctgt ttttgcagac cggaacgttt gtgcttagcg
     3961 cgatgagcga gttacatggc gacgcacgtt atctggttta tggcggcatc ctgtttgccg
     4021 cgtgggggaa atcggcccag ctaccgatgc aagcgtggct accggacgca atggaagcgc
     4081 caacaccgat cagagcctat ctccacgccg catcgatggt gaaagtgggc ggctggcact
     4141 ggagggcagc atcgcctaca tcgtcaacca cgcgttcgct aaaagcctgt ttttccttgt
     4201 agcaggtgcg ctgagttaca gctgcggcac gcgcttgttg ccgcgtctgc gtggcgtatt
     4261 gcactccctg ccgttgccag gcgtgggttt ctgcgtggca gcgctggcga ttaccggtgt
     4321 gccgccgttc aacggcttct tcagtaaatt cccgctgttt gccgccggtt ttgcgttgtc
     4381 agtggagtac tggatcctgc tgcccgccat gattctgctg atgattgaat cggtcgccag
     4441 tttcgcctgg tttattcgct ggtttggtcg cgttgtgcct ggcaaaccga gcgaggccgt
     4501 cgccgatgcc gcaccgctgc cagggtcaat gcgcctggtg ttgattgtac tgattgtgat
     4561 gtcgctgatt tccagcgtaa tcgccgcgac ctggttgcag taaggagatg atgaatgatc
     4621 ggttctatga tcgtaaataa tctggcggga ctgatgatgc tgacatcgct gtttgtgatt
     4681 agcgtcaaaa gctatcgcct gtcatgcgga ttttacgcct gccagtcgct ggtgctggtg
     4741 tctattttcg ccactctctc gtgcctgttc gccgcagagc aactgctgat ctggtccgcc
     4801 agcgccttta tcaccaaagt gctgctggta ccgttaatca tgacttacgc tgcacgaaat
     4861 attccccaga acatcccgga aaaagcgtta ttcggtccgg caatgatggc actgctcgcg
     4921 gcgttaattg tcctgctttg cgcatttgtc gttcagcccg tgaagctacc gatggctacc
     4981 gggctgaaac cggcgctggc ggtagcgtta ggtcattttc tgcttggcct gctgtgcatt
     5041 gtcagccagc gcaatatcct gcggcaaatt tttggttact gcctgatgga aaacggctcc
     5101 catctggtgc tggcgcttct tgcctggcga gcaccggaac tggtggaaat aggtatcgct
     5161 accgacgcca tcttcgccgt cattgtgatg gtgttactgg caagaaaaat atggcgtacc
     5221 cacggcacgc tggacgtgaa caacttgacc gcgctgaagg gataatgaga tgagttattc
     5281 tgtgatgttc gctttactcc tgctcacgcc gctgcttttt tcgctgctct gttttgcctg
     5341 ccggaaacgg gggctctctg cgacttgtac ggtgactgta ttacatagct tagggatcac
     5401 actgctgctg attctggcac tctgggtggt ccaaactgcc gctgatgcag gagaaatatt
     5461 cgctgcggga ctgtggcttc atattgatgg tctgggcggt ttgttcctcg ccattcttgg
     5521 tgtgattggc tttctcaccg gtgtttactc gattggctac atgcgtcatg aagtggcaca
     5581 cggcgagctt tcacccgtta cactgtgcga ttactacggt ttcttccatc tgtttttgtt
     5641 caccatgctg ctggttgtta ccagcaataa cctgattgtg atgtgggcgg cgatcgaagc
     5701 caccacctta agctcggcgt ttctggtagg catttacggt cagcgttcat cgctggaatc
     5761 agcatggaag tacatcatta tttgtactgt tgatgtcgct tttggtctgt tcggtaccgt
     5821 gctggtatac gccaacgccg ccagcgttat gccgcaggca gaaatggcga tattctggag
     5881 cgaggttctt aagcaatcgt ccttgcttga cccaacatta atgctgttgg cctttgtgtt
     5941 tgtgctaatt ggctttggta ccaaaaccgg gctatttccc atgcacgcct ggctgccgga
     6001 tgctcacagt gaagcgccga gtccggtcag cgccctgctc tccgccgtat tgctgaactg
     6061 cgcgctgttg gtgctgattc gctattacat cattatttgc caagccatcg gcagcgattt
     6121 ccccaaccgg ttgttgctca tcttcggcat gttgtcggtt gccgtggcgg catttttcat
     6181 tctggtacag cgggacatta agcgtctgct ggcgtactcc agcgtggaga acatggggct
     6241 ggtcgcggtg gcgctaggca ttggcgggcc gctgggaatt tttgccgcgc tgctgcacac
     6301 cttaaaccac agtctggcaa aaacgctgct gttctgcggt tccggcaatg tactgctcaa
     6361 gtacggcacg cgcgatctca acgtcgtctg tgggatgctc aaaatcatgc catttaccgc
     6421 cgtgctgttt ggcggcggtg cgctggcgct ggcagggatg ccgcccttca acatttttct
     6481 tagcgaattt atgaccgtta ccgcaggact ggcacgtaat cacctgctga ttatcgtcct
     6541 gctgttattg ctgttaacgc tggtgctggc gggcctggta cggatggctg cgcgggtgtt
     6601 aatggcgaaa ccgccgcagg ccgttaaccg gggtgatctc ggctggttga ccacctcgcc
     6661 aatggtgatt ctgctggtca tgatgctggc gatgggaacg catattccac aacctgtcat
     6721 caggatcctg gcgggcgctt ccactatagt cctctcaggg acgcacgacc tgcctgcaca
     6781 acgtagcacc tggcatgatt ttttgccttc aggcaccgca tctgtttcgg agaaacacag
     6841 tgaacgttaa ttcatcgtca aatagtggcg aagcgattct cgccgccctg aaaacgcagt
     6901 tccccggcgc ggtactggat gaagagcgac aaacgcctga acaggtcacc attacggtga
     6961 aaatcaatct gctgcctgac gttgtacatt atctttatta tcaacatgat ggctggcttc
     7021 cagtcctgtt tggcaacgac gagcggacac ttaacggtca ttacgcggtt tattatgccc
     7081 tttcaatgga aggggccgaa aaatgctgga tcgtggtgaa ggcactggtc gatgccgaca
     7141 gtcgggagtt tccgtcagtc acaccgcgcg tccctgccgc ggtctggggc gagcgagaaa
     7201 ttcgcgatat gtacgggctg attccggttg gcctgccgga tcagcgtcgc ctggtgttgc
     7261 ccgatgactg gccggaagat atgcatccgc tgcacaaaga tgcgatggat tatcgactgc
     7321 gccctgaacc gacgacagat tccgaaacgt atgcgtttat caatgagggc aacagcgatg
     7381 cgcgggtgat ccctgtcggc ccgctgcata tcacctccga tgaaccgggt cacttccgct
     7441 tgtttgtgga tggcgagcaa attgtcgatg ctgattaccg cctgttttat gtccatcgag
     7501 gcatggagaa actggcagaa acgcggatgg gctacaacga agtgaccttc ttatcggacc
     7561 gcgtgtgtgg gatttgcggt tttgcccaca gtgtggccta taccaactcg gttgaaaatg
     7621 cactggggat tgaggtgccg caacgagcgc ataccattcg ctcgattctg ctggaagtcg
     7681 aacggctaca cagtcatttg ctcaaccttg gcctctcctg ccattttgtt ggttttgata
     7741 ccggctttat gcaatttttc cgcgtgcggg aaaagtcgat gacgatggcg gaattgctga
     7801 ccgggtcgcg taaaacctac ggtctgaatc tgattggtgg tgttcgccgc gatattctca
     7861 aagagcaacg tctgcaaacg ctgaaactgg tgcgcgagat gcgcgccgac gtgtcggagc
     7921 tggtagagat gctgcttgct acgccgaata tggaacaacg cactcagggc attggcattc
     7981 tcgaccgaca aatcgcccgt gattatagcc ctgtagggcc gctgatccgc ggcagtggtt
     8041 ttgcccgtga tttgcgcttt gatcacccct acgccgacta cggcaatatt ccaaaaacac
     8101 tgtttacctt caccggcggc gatgttttct cccgcgtgat ggtccgtgtc aaagagacgt
     8161 ttgattcgct ggcaatgctg gaatttgccc tcgacaacat gccggatacc ccactgctga
     8221 ccgaaggctt tagctataaa cctcacgcat tcgcgctggg ctttgttgaa gcgccacgcg
     8281 gtgaagacgt gcactggagc atgctcggtg ataaccaaaa attgttccgc tggcgctgcc
     8341 gtgccgccac ctacgccaac tggccggtgt tgcgttacat gctgcgcggc aataccgttt
     8401 ctgacgcacc gctgattatc ggtagccttg atccctgcta ctcctgtacc gaccgtgtga
     8461 cgctggtaga tgtgcgcaag cgccagtcaa aaaccgtgcc gtataaagag atcgaacgct
     8521 acggcattga tcgtaaccgt tcgccgctga agtaaggaca gaagatgctg aagttactga
     8581 aaactattat gcgcgccgga accgcgacgg tgaaatatcc cttcgcgcca ctggaggtca
     8641 gcccaggctt tcgcgggaaa ccggacctga tgcccagcca atgtattgcc tgcggcgcct
     8701 gtgcttgtcc ggcaaatgcg ctgactatcc agaccgacga ccagcaaaat tcgcgcacct
     8761 ggcagctcta tctggggcgt tgtatttact gcggacgttg tgaagaagtg tgcccgacca
     8821 gagccatcca gcttaccaat aactttgaac tgaccgtcac caataaagcc gatctctata
     8881 cccgcgcgac gttccatcta caacgttgca gccgttgcga acgcccgttt gccccgcaaa
     8941 aaaccgtcgc actggctgct gaattgttgg cacagcaaca aaatgcgcca caaaaccgcg
     9001 aaatgttgcg ggcgcaagcg agcgtctgcc cggagtgcaa acaacgcgcg acgctgatca
     9061 acgacgatac agatgtaccg ctggtggcta aggagcagct atgagtccag tgcttacaca
     9121 acatgtcagc cagcccatca cgctggatga gcaaacgcaa aagatgaagc ggcatttgct
     9181 acaggatatc cgtcgctcag cctacgttta tcgcgtcgat tgcggcggct gcaacgcctg
     9241 tgaaatcgaa atttttgctg ccatcacccc cgtattcgac gcagaacgtt ttggcattaa
     9301 ggttgtttca tcaccgcgtc acgccgatat tttgttattt actggcgcag tcacccgggc
     9361 gatgcgtatg cctgcacttc gggcgtatga gtctgccccc gatcataaaa tctgtgtttc
     9421 ctacggcgcg tgcggtgtcg gcggcggtat tttccacgat ctctacagcg tctggggcgg
     9481 cagcgacacc attgtcccca ttgatgtttg gatccccggc tgcccgccaa caccggccgc
     9541 caccattcac ggtttcgccg tggcgctcgg tttgctgcaa cagaagattc acgctgtgga
     9601 ttatcgcgat cccaccgggg tgactatgca accgttgtgg ccacagatcc cgccatcaca
     9661 gcgtatcgcc attgagcgag aagcgcggcg gctggcgggc tatcgtcagg ggcgagaaat
     9721 ttgcgatcgg ctcctgcgcc atttaagcga cgatcctaca ggaaatcggg ttaacacctg
     9781 gttgcgcgat gccgacgatc cacgtctcaa tagtatcgtt cagcaactct ttcgcgtact
     9841 ccgggggtta catgactgaa gagtgcgggg aaattgtttt ctggacgctg cgaaaaaagt
     9901 ttgtcgccag tagcgacgag atgccggaac accgctctca ggtaatgtat tactcgctgg
     9961 ctatcggcca tcacgttggc gtgattgatt gtctgaatgt cgccttccgc tgcccactga
    10021 cggaaaacga agattggctt gcacaggtcg aagaggagca agcccgacgt aagatgctgg
    10081 gggtgatgac ctttggtgag attgttattg acgccagcca caccgccctg ttgacccggg
    10141 cattcgcgct actggcagat gacgcgacgt ctgtgtggca ggcgcgtagc attcaattca
    10201 ttcatctgtt ggatgaaatt gtgcaggaac cggccatcta tctgatggcc agaaaaattg
    10261 cgtgagaagg atttctcatt aataaggact gttgatggct atgtcagacg aggcgatgtt
    10321 tgccccgcca caaggaataa caattgaagc ggtaaacgga atgctcgcgg agcggttagc
    10381 acagaaacac ggtaaggcgt ctttattacg cgccttcatc ccgatgccgc cgccgttcag
    10441 cccggtacaa cttattgaac tgcatgttat caaaagcaac ttctattacc gctaccatga
    10501 tgatggcagc gatgtgacgg caacaacaga gtatcagggc gagatggtcg attattcgcg
    10561 tcacgccgtc cttctcggca gtagtggaat ggcggagcta cgctttattc gtacccacgg
    10621 cagccgtttt actccctagg attgcacact gtttaactgg ctggcacgca ttatcactcc
    10681 ggttctgcaa tcatggctca atgatgaaga acaacaggtg gcgctgcgtt tgctggagaa
    10741 agatcgcgat catcatcggg tactggttga tattactaat gcagtgctgt cacatcttga
    10801 tctcgacgat ctgatcgctg acgtcgctcg tgagatccat cattttttcg gtctggcttc
    10861 agtcagtatg gtactgggcg atcatcgaaa gaacgagaag tttagcctgt ggtgcagcga
    10921 tctttctgcc tcacattgtg cgtgtctgcc acgcaatatg cctggcgaca gtgtattgct
    10981 gacacaaacg ctacaaaccc gacaaccgac cttgacgcac cgtgcagacg atctgtttct
    11041 ctggcaacgc gacccgttat tactcttact tgcatctaac ggctgcgaat ctgcgctcct
    11101 tataccgctt acctttggca accatacacc gggtgcattg ttgctggcgc atacctcttc
    11161 cactctcttt agtgaggaaa actgccagct actacaacac atagccgatc gcatcgctat
    11221 tgccgttggc aatgccgatg cctggcgtag catgaccgat ttgcaggaaa gtttgcagca
    11281 agaaaactac cagcttagcg agcagctcct ttcgaatctg ggcatcggtg acattatcta
    11341 tcaaagccag gcaatggaag acctgctcca gcaggtagat attgtagcga agagcgacag
    11401 tacggtgttg atttgtggtg aaaccggaac cggcaaagag gtgatcgcca gagcgctcca
    11461 tcaacttagc acgcgacgcg acaaaccgct ggtcaaaatc aactgcgctg ccatccccgc
    11521 cagtcttctg gaaagtgagt tattcggtca tgacaaaggg gcgtttactg gtgcgattaa
    11581 tacacatcgt ggtcgttttg aaattgccga tggcggcacg ttgtttctcg atgaaattgg
    11641 cgatctgccg ttagaacttc agcctaaact gctgcgcgta ttgcaggaac gggagattga
    11701 gcgtctcggc gggagtagaa cgatcccggt gaatgtcaga gtcattgccg ccaccaaccg
    11761 tgatttgtgg caaatggttg aagatcgcca gtttcgcagc aatctctttt atcgcctgaa
    11821 tgtcttccca ttggaattgc cgccgctacg cgaccgtccg gaagatatcc ctcttttagc
    11881 aaaacatttc acgcaaaaaa tggcgcgcca tatgaatcgc gcaattgacg ccatcccgac
    11941 cgaggcgcta cgccagttga tgtcgtggga ctggccgggc aacgtgcacg agctggaaaa
    12001 cgtgattgag cgagcggtac tgctgactcg cggtaacagt ctgaatttac atcttaatgt
    12061 ccgacaaagc cgtttactgc cgacgctaaa tgaagattca gcgcttcgca gttcaatggc
    12121 gcagttgctg cacccgacga cgccagagaa tgacgaagaa gaacgtcagc gcattgttca
    12181 ggtattgcga gaaaccaatg gcattgttgc cgggccccgt ggcgcggcga cacgattagg
    12241 gatgaagcgc accacgctgc tgtcacgaat gcagcgtctg gggatctcgg ttcgcgaggt
    12301 gttgtaatct gcttttgcag gagtatgcat gagaaacaaa ctctctttcg acttgcagtt
    12361 gagcgccaga aaagcggcaa tcgctgaacg gattgccgtc cataaaattg cccgcagtaa
    12421 agtgtcggtc tttttaatgg cgatgtccgc tggcgtgttt atggcgatcg gatttacttt
    12481 ttacctttcc gttatcgccg atgccccgtc ttcacaggca ttaacccatc tggtgggcgg
    12541 cctttgcttt acactcggct ttattttgct ggcggtttgc ggcacagcct gttcacctcg
    12601 tcggtaatga cggtgatagc aaaaagtcgg ggcgttatta gttggcgaac ttggctgatt
    12661 aacgcacttc tggtggcctg tggtaatctg gcaggtattg cctgtttcag tttgttaatc
    12721 tggttttccg ggctggtgat gagtgaaaac gcgatgtggg gagtcgcggt tttacactgc
    12781 gccgagggca aaatgcatca tacatttact gaatctgtca gcctcggcat tatgtgcaat
    12841 ctgatggttt gcctggcgct gtggatgagt tattgcgggc gttcgttatg cgacaaaatc
    12901 gtcgccatga ttttgcccat caccctgttt gtcgccagtg gctttgagca ctgtatcgcc
    12961 aatttgtttg tgattccgtt cgccattgcc attcgccatt tcgccccccc ccttctggca
    13021 actggcgcac agtagcgcag acaattttcc ggcactgacg gtcagccatt ttattaccgc
    13081 caatctgctc ccggtgatgc tgggtaatat tatcggcggt gcagtgctgg tgagtatgtg
    13141 ttatcgggct atttatttac gtcaggaatc ctgaaaaatc agcccggcga aacagttcgt
    13201 cgggctgaag attattcttg cgcgatttgc ccatcgggcc aggcgtggat cacggctttg
    13261 atcagcgtcg ccaatggaat ggcgaagaat acgccccaga atccccacaa accaccgaag
    13321 atcaccaccg ataaaataat caccagcgga tgcaggttaa ccgcttcgga gaacaacacc
    13381 ggtactagca ggttgccgtc cagcgcctga ataatcagat acaccgcgaa gcagctccag
    13441 aattccgtgc ctgcgccaaa ctggaatagc gccacgccaa ccaccggaat ggtcaccaca
    13501 aatgcgccaa tgtacggaat aagaaccgag aagccgacca gcaccgccag cagcagcgaa
    13561 tagttcagcc caaagagcaa gaaccccagc caggtggcga tccccaccac gatcatctcc
    13621 agcactttgc cgcggatata gttggtgatt tgttgattca tctccttcca cacctgtcct
    13681 gccagtccac ggttgcgcgg cagcacccga cgaacggcgt tcagcatctg ctctttgtct
    13741 ttcagcagga agaagaccat caatggcacc agcaccagat agacggcaat ggtcagcaaa
    13801 ccgaccagcg aggcgaggga aattttcacc accgaatcgc ccatggtcag catccgactg
    13861 cgcatatttt cggccattgc atcaataatg cccgcgtcca ttaacgccgg atagcggcgc
    13921 ggcaacgtgg cggcaaagtc agaaagctta ttgagcatcc ccggcatatc gcggattaag
    13981 tagatgccct gttgccaggc gataggcagt accacgaacg ccatcagtag caatataccg
    14041 acaaaaacca ccaatacaat cgacgtcgcc cagcggcggg agcagccaat agattgcagg
    14101 cgcacggttg gccattccag caaataggcc agcacaatag ccaccagcaa cggagcaagc
    14161 aggccactaa agaaaaagat aatgccaaat ccggcaacta aaataaccag caaggcaatc
    14221 gcttccgggt cgctaaaacg gcggcgatac cattgcatca acatttcgag cataaaaacc
    14281 ttccctgaac ctcaagagcg ggattgcgat ccgcaattgt atcgaaatgt cacaaaaaag
    14341 acttcgcttt ttatgacgga ttcaggaaac tgaaaagtca tttgagtggg ctaatcttcg
    14401 ccgttacact caaaggcggc gcggtgggaa cgatatttca cagtatcggt caaatgacta
    14461 tcttcagaaa tacaggatag aggttatgtt caggcagttg aaaaaaaacc tggttgcaac
    14521 cctcattgct gctatgacca ttggtcaggt agccccggcg tttgccgaca acgcagacac
    14581 cttgccggat atgggaacct ccgcaggaag cacgctttcc attggtcagg aaatgcagat
    14641 gggcgactat tatgtccgcc agctacgcgg cagcgcgccg ttaattaatg acccgctgtt
    14701 aacgcaatat attaattcgc tggggatgcg tctggtttcg catgccaatt cggttaagac
    14761 accgtttcat ttttttctaa tcaacaacga cgaaattaac gcctttgctt tctttggcgg
    14821 caacgtggtg ctgcactctg ccctgttccg ttattccgat aacgaaagtc aactggcttc
    14881 agttatggcg cacgaaatct cccacctcac ccaacgtcac ctggcgcgag cgatggaaga
    14941 tcagcagcgc agcacgccgc tgacctgggt cggcgcgtta ggttctattt tactggcgat
    15001 ggccagtccg caggcgggga tggcggcgct gaccggtaca ctggcgggaa cgcgtcaggg
    15061 gatgatcagt ttcacccagc aaaatgaaca ggaagcggac cgcattggta ttcaggtgct
    15121 gcaacgctcg ggattcgatc cgcaggcgat gccaaccttc ctcgaaaaat tactcgatca
    15181 ggcgcgttac tcctcgcgcc cgccggaaat tttattgact cacccgttgc cggaaagtcg
    15241 tctggcagat gcccgcaacc gtgctaatca gatgcgaccg atggtggtgc agtcgtcgga
    15301 agatttctat ctggcgaaag cgcgcacact ggggatgtat aattccggac gtaaccagct
    15361 caccagtgat ttgctggatg aatgggcgaa aggaaacgtt cgtcagcaac gagcggcgca
    15421 atatggtcgt gctttacagg cgatggaagc caataaatac gacgaggcgc gtaaaacgct
    15481 gcaaccgtta ctggcggcag aacctggcaa cgcatggtat ctcgatctgg ctaccgatat
    15541 cgatcttggg caaaacaaag ccaatgaggc aatcaatcgc ctgaaaaatg cccgtgattt
    15601 gcgcaccaat ccggtgttgc agctcaacct ggcaaacgct tatctgcaag gcggtcaacc
    15661 acaagaagcg gccaatattc tcaatcgcta cacctttaat aataaagatg acagcaacgg
    15721 ctgggattta ctggcacagg cggaagccgc gctaaataac cgcgatcagg agctggctgc
    15781 gcgagcagaa ggttatgcgc tcgccggacg actcgatcag gccatttcgc tgttgagtag
    15841 cgccagttcg caggtgaaat taggcagcct gcaacaagcg cgttacgatg cgcgcatcga
    15901 ccagttgcgc cagctgcagg aacgctttaa gccttatacc aagatgtaat tcgcattaaa
    15961 ggaagaacaa tgaccaaaca ggtaaaaatc taccataacc cacgctgttc aaagagccgg
    16021 gaaacgctga acctgctgaa agaaaacggc gtggagccag aagtggtact ctaccttgag
    16081 acacccgccg atgcggcaac gctgcgcgat ttgctgaaaa tgctggggat gaatagcgcc
    16141 cgtgaattga tgcgccagaa agaggatctt tataaagaac tgaacctggc tgacagttcg
    16201 cttagcgaag aggcgctgat tcaggcaatg gtggataatc cgaagctgat ggagcgcccg
    16261 attgtggtcg cgaatggcaa agcgcggatt ggtcgtccac cggagcaggt actggaaatc
    16321 gtgggttaag atgtgctcca tcgctagttg aagcacattg ccggatgcga cgcttgccat
    16381 gtcttatccg gcctacgaat actatggatt aacttcgcgt agttcggata aggcgttcgc
    16441 gccgcatccg acaataaaca ccttatctac aacttcagaa tttctttcac aaacggaatg
    16501 gtcagcttac gttgcgcggt aatcgacgca cgatccaact gatccaacgt cataaatagc
    16561 gtgcgcattt ctctgtcgag ccgcttcagc aagaaacgcc ccacatcttc cggcagttca
    16621 aaaccacgca aacgcgcgcg taactgtagc gcctgcaact tatcttcatc agaaagtggc
    16681 tgcaatttgt agatctgccc ccagtcgagt cgcgacgcga gatccggtaa tcccagattc
    16741 aactgccgcg gtggacgatc gccggtgatc aacaaccgtg ttttgcccga ttccagaatt
    16801 cgattgtaga gatcgaaaat cgccatctcc cacaactcat cgcctgcaat acactcaatg
    16861 ttgtcgatac aaaccagcga caaatgctcc ataccgtcga gcacttccgg aacaaaccaa
    16921 gtgcgtttat ccagcgggac atagcccacc gcatcgccac gctgcgacaa ttccgcgcaa
    16981 gccgcgtgca gcagatggct gcgccccgcg ccttcgcgtg cccagagata gatgtaaccg
    17041 ctatgttcct gacgcagcac gttttgcagc gcggccagta aagaggagtt atcccccggc
    17101 cagaaacttg caaaggtttc gtcgtcagga agataaagtg gcaaagagag ctgtgccggt
    17161 gtgttcagag atacctcaac caggatttca caaaatcgcg agaagtttac cacagaatcc
    17221 catgatgttt gaaccgggca gcaacactgc ccggtcggta cattatttgt ctgttatatc
    17281 cgcctcttct gcgtccagca ccacttcttc agggcgcagc acactgatca gtttgaaaat
    17341 caaacttaag ccgataccga cgatggtcgc cagcgccata ccttttaact ccgccgcgcc
    17401 gatgtttacc ttcgcgccac tgacgccgat gatcaaaatc acggaagtca ggatcaggtt
    17461 ctgtgctttg ttgtaatcca ctttcgattc gatcaaaaca cgaataccgg aagcaccgat
    17521 gacaccataa agcagcagcg aaacgccgcc catcaccggc aatgggatca tctggatagc
    17581 ggcagccagt ttaccgacgc aggaaagcag gatagcgaaa atcgccgccc cgccgataac
    17641 ccaggtactg taaacacggg tgatcgccat cacgccaatg ttttctccgt aagtggtatt
    17701 tggcgtggag ccaaagaagc cggagatcac ggtcgacagg ccgttagcaa acatcgaacg
    17761 gtgcagacct ggatcgcgca gcagatcttt tttgacgata ttagccgtta ctaccaggtg
    17821 ccctacgtgt tcggcaataa ccactaacgc cgctggcaga atagtcagaa tggcaaacca
    17881 ctcgaagcgc ggcgtataga gggttggcag cgcaaaccag tgagcattaa taatcggcgt
    17941 ggtatcgaca attcccattg cgaaagagag cgcgtagccc accagcacgc caattaaaat
    18001 cgggataatt gccaggaaac cacgaaacag cacggaacct aaaaccgtga ccgccagggt
    18061 ggtaatagag atgatgatgg ttttggagtc tggcgtttgc ccttcagccg ggagtaaacc
    18121 cgccataccg gcagctacgc ccgccagctc cagaccgatg acggcaacga ttgcgcccat
    18181 tgccgcaggt ggaaacagca cgtccagcca gccggtcccc gctttcttca cgataaaaga
    18241 aaccaggcag aacagcacgc cgcacataat aaagccgccc agcgcgactt cataccctaa
    18301 cggcaacagt aacaataccg gtgaaataaa ggcaaagctg gaaccaagat aagccggaat
    18361 tttcccttta cagatgaaga gatacagcag cgttccaata ccgttaaata acagtacagt
    18421 cgccgggtta atatgaaata agacgggcac caggacggtt gcaccaaaca tggcgaacaa
    18481 atgttgcaaa ctaagcggga ttgtctgtaa aagtggcggt ctttcactca ccccgatagc
    18541 acggcgcgtc atagtattat cctctgtatt atgtgttata ggcgctttac tcaaaaaaaa
    18601 gccgactctt aaagtcggct ttaattattt ttattcttta tttcgtacca aagattttgt
    18661 caccggcatc gccgaggccc ggaataatgt atccgtgctc gttcagtccc tgatcaatcg
    18721 atgcggtata cagttcgacg tccgggtgcg ctttttccag cgcagcgata ccttctggcg
    18781 cagcgaccag caccagaact ttgatgctgc tgcagcccgc ttttttcagc aggtcgatgg
    18841 tcgcgataac ggaaccaccg gttgccagca ttgggtcaac gatcagcgcc atacgctcat
    18901 cgatgttaga aaccagtttc tggaagtacg gtaccggctc cagcgtttct tcattacggt
    18961 acataccgac aacgctgatg cgcgcgctcg gaacattttc cagcacaccg tccatcatac
    19021 caagacccgc acgcagaatt ggcacaacgg taattttctt acctttgatc tggtcgattt
    19081 ctaccgggcc gttccagcct tcgatagtta ctttttccgt ttcgaggtcg gcggtcgctt
    19141 cgtaagtcag caggctaccc acttcggaag cgagttcgcg aaagcgcttg gtgctgatat
    19201 cttgctcacg catcagtccc agcttgtgtt tgacgagtgg gtgtttgact tccacgatct
    19261 tcatactctt tctcctttga ggggcagcca caaaaaaatc gacggattat acctcctttc
    19321 ttcaaggcgg caatattctt ttcgttgact ttagtcaaaa tgataacgat ttgagataaa
    19381 gttattttat attcaaatgg ttatgaaaga agatcattcc atccgaaaac taacctttgc
    19441 cctggcacaa gtcttctttc gccgcgcgtc tggggaaaag acgtgcaaaa aggttgtgca
    19501 aagcagcctc gcaaacgttt gctttccctg ttagaattgc gccgaatttt atttttctac
    19561 cgcaagtaac gcgtggggac ccaagcagtg accgataaaa cctctcttag ctacaaagat
    19621 gccggtgttg atattgacgc gggtaatgct ctggttggaa gaatcaaagg cgtagtgaag
    19681 aaaacgcgtc gtccggaagt gatgggcggt ctgggcggct tcggtgcgct gtgtgcattg
    19741 ccgcaaaaat atcgtgaacc cgtgctggtt tccggcactg acggcgtagg taccaagctg
    19801 cgtctggcaa tggacttaaa acgtcacgac accattggta ttgatctggt cgccatgtgc
    19861 gttaatgacc tggtggtgca aggtgcagaa ccgctgtttt tcctcgacta ttacgcaacc
    19921 ggaaaactgg atgttgatac cgcttcagcg gtgatcagcg gcatcgcgga aggttgtctg
    19981 caatcgggct gttcactggt gggtggcgaa acggcagaaa tgccggggat gtatcacggt
    20041 gaagattacg atgtcgcggg tttctgcgtg ggcgtggtag aaaaatcaga aatcatcgac
    20101 ggctctaaag tcagcgacgg cgatgttctg attgcactcg gttccagcgg tccgcactcg
    20161 aacggctatt cgctggtgcg caaaattctt gaagtcagcg gttgtgatcc gcaaaccacc
    20221 gaacttgatg gtaagccatt agccgatcat ctgctggcac cgacccgcat ttacgtgaag
    20281 tcagtgctgg agttgattga aaaggtcgat gtgcatgcca ttgcgcacct gaccggcggc
    20341 ggcttctggg aaaacattcc acgcgtattg ccagataata ctcaggcagt gattgatgaa
    20401 tcttcctggc agtggccgga agtgttcaac tggctgcaaa cggcaggtaa cgttgagcgc
    20461 catgaaatgt atcgcacctt caactgcggc gtcgggatga ttattgccct gcctgctccg
    20521 gaagtggaca aagccctcgc cctgctcaat gccaacggtg aaaacgcgtg gaaaatcggt
    20581 atcatcaaag cctctgattc cgaacaacgc gtggttatcg aataatgaat attgtggtgc
    20641 ttatttccgg taacggaagt aatttacagg caattattga cgcctgtaaa accaacaaaa
    20701 ttaaaggcac cgtacgggca gttttcagca ataaggccga cgcgttcggc cttgaacgcg
    20761 cccgccaggc gggtattgca acgcatacgc tcatcgccag cgcgtttgac agtcgtgaag
    20821 cctatgaccg ggagttgatt catgaaatcg acatgtacgc acccgatgtg gtcgtgctgg
    20881 ctggttttat gcgcattctc agcccggcgt ttgtctccca ctatgccggg cgtttgctga
    20941 acattcaccc ttctctgctg ccgaaatatc ccggattaca cacccatcgt caggcgctgg
    21001 aaaatggcga tgaagagcac ggtacatcgg tgcatttcgt caccgatgaa ctggacggtg
    21061 gcccggttat tttacaggcg aaagtcccgg tatttgctgg tgatacggaa gatgacgtca
    21121 ccgcccgcgt gcaaacccag gaacacgcta tttatccact ggtgattagc tggtttgccg
    21181 atggtcgtct gaaaatacac gaaaacgccg cgtggctgga tggtcaacgt ctgccgccgc
    21241 agggctacgc tgccgacgag taatgccccc gtagttaaag cgccagctct gccgctggcg
    21301 tttttcaatt cacctgtaaa tcgcaagctc cagcagtttt tttccccctt ttctggcata
    21361 gttggacatc tgccaatatt gctcgccata atatccaggc agtgtcccgt gaataaaacg
    21421 gagtaaaagt ggtaatgggt caggaaaagc tatacatcga aaaagagctc agttggttat
    21481 cgttcaatga acgcgtgctt caggaagcgg cggacaaatc taacccgctg attgaaagga
    21541 tgcgtttcct ggggatctat tccaataacc ttgatgagtt ctataaagtc cgcttcgctg
    21601 aactgaagcg acgcatcatt attagcgaag aacaaggctc caactctcat tcccgccatt
    21661 tactgggcaa aattcagtcc cgggtgctga aagccgatca ggaattcgac ggcctctaca
    21721 acgagctatt gctggagatg gcgcgcaacc agatcttcct gattaatgaa cgccagctct
    21781 ccgtcaatca acaaaactgg cttcgtcatt attttaagca gtatctgcgt cagcacatta
    21841 cgccgatttt aatcaatcct gacactgact tagtgcagtt cctgaaggat gattacacct
    21901 atctggcggt ggaaattatc cgtggagaca ccatccgtta cgcgctgctg gagatcccat
    21961 cagataaagt gccgcgcttt gtgaatttac cgccagaagc gccgcgtcga cgcaagccga
    22021 tgattcttct ggataacatt ctgcgttact gccttgatga tattttcaaa ggcttctttg
    22081 attatgacgc gctgaatgcc tattcaatga agatgacccg cgatgccgaa tacgatttag
    22141 tgcatgagat ggaagccagc ctgatggagt tgatgtcttc cagtctcaag cagcgtttaa
    22201 ctgctgagcc ggtgcgtttt gtttatcagc gcgatatgcc caatgcgctg gttgaagtgt
    22261 tacgcgaaaa actgactatt tcccgctacg actccatcgt ccccggcggt cgttatcata
    22321 attttaaaga ctttattaat ttccccaatg tcggcaaagc caatctggtg aacaaaccac
    22381 tgccgcgttt acgccacatt tggtttgata aagcccagtt ccgcaatggt tttgatgcca
    22441 ttcgcgaacg cgatgtgttg ctctattatc cttatcacac ctttgagcat gtgctggaac
    22501 tgctgcgtca ggcttcgttc gacccgagcg tactggcgat taaaattaac atttaccgcg
    22561 tggcgaaaga ttcacgcatc atcgactcga tgatccacgc cgcacataac ggtaagaaag
    22621 tcactgtggt ggttgagtta caggcgcgtt tcgacgaaga agccaacatt cactgggcga
    22681 agcgcctgac cgaagcaggc gtgcacgtta tcttctctgc gccggggctg aaaattcacg
    22741 ccaaactgtt cctgatttca cgtaaagaaa acggtgaagt ggtccgttac gcacacatcg
    22801 ggaccgggaa ctttaacgaa aaaaccgcgc gtctttatac tgactattcg ttgctgaccg
    22861 cagatgcgcg tatcaccaac gaagtacggc gggtatttaa ctttattgaa aacccatacc
    22921 gcccagtgac atttgattat ttaatggtgt caccgcaaaa ctctcgccgt ctgttatatg
    22981 aaatggtaga ccgcgaaatc gccaacgcgc agcaagggct gcccagtggt atcaccctga
    23041 agctaaataa ccttgtcgat aaaggcctgg ttgatcgtct gtatgcggcc tccagctccg
    23101 gcgtaccggt taatctgctg gttcgcggaa tgtgttcgct gatccccaat ccggaaggca
    23161 ttagcgacaa cattcgtgcc atcagtattg ttgaccgtta ccttgaacat gaccgggttt
    23221 atatttttga aaatggcggc gataaaaagg tctacctttc ttccgccgac tggatgacgc
    23281 gcaatattga ttatcgtatt gaagtggcga caccgctgct cgatccgcac ctgaagcagc
    23341 gggtgctgga catcatcgac atattgttca gcgatacggt caaagcacgt tatatcgata
    23401 aagaactcag taatcgctac gttccccgcg gcaatcgccg caaagtacgg gcgcagttgg
    23461 cgatttacga ctacatcaaa tcactcgaac aacctgaata accctatgcc aatacacgat
    23521 aaatcccctc gtccgcagga gtttgctgcg gtcgatcttg gttcaaacag ttttcacatg
    23581 gtcatagccc gtgtggtaga tggtgccatg cagattattg gccgcctgaa acagcgagtg
    23641 catctggcgg acggcctggg gccagataat atgttgagtg aagaggcaat gacgcgcggt
    23701 ttgaactgtc tgtcgctgtt tgccgaacgg ctacaagggt tttctcctgc cagcgtctgt
    23761 atagtcggca cccatacgct gcgtcaggcg ctgaacgcca ctgactttct gaaacgcgtg
    23821 gaaaaggtca ttccctaccc gattgaaatt atttccggta atgaagaagc ccgtctgatt
    23881 tttatgggcg tggaacatac ccaaccggag aaaggtcgca aactggttat tgatattggc
    23941 ggcggatcta cggaactggt gattggtgaa aatttcgaac cgattctcgt tgaaagccgc
    24001 cggatgggtt gtgtcagctt tgcccagctt tacttccctg gcggggtcat caataaagag
    24061 aattttcagc gcgctcgtat ggcggcagca caaaaactgg aaactttaac ctggcaattc
    24121 cgtattcagg gctggaacgt ggcaatgggc gcttccggta ccataaaagc cgcccatgaa
    24181 gtgttaatgg aaatgggcga gaaagacggg ataattaccc cggaacgtct ggaaaaactg
    24241 gtaaaagaag ttttacgtca ccgtaatttc gcatcgctga gtttaccggg tctttccgaa
    24301 gagcggaaaa cagtcttcgt tcctggactg gcgattttat gcggtgtgtt tgatgcttta
    24361 gccatccgtg aactgcgcct ttctgacggg gcgttacgcg aaggcgtact gtacgaaatg
    24421 gaaggacgtt tccgtcatca ggatgtgcgt agtcgcaccg ccagcagcct cgccaaccag
    24481 tatcacatcg acagcgaaca ggcccgacgg gtgctggata ccactatgca aatgtacgaa
    24541 cagtggcggg aacagcaacc gaagctggcg catccgcaac tggaggcgct actgcgatgg
    24601 gccgccatgc tgcatgaggt cgggttgaat atcaaccaca gcggtttgca tcgccactcc
    24661 gcttatattc tgcaaaacag tgacttgccg ggttttaatc aggaacagca gctgatgatg
    24721 gcgacactgg tgcgctatca ccgcaaagcg attaaactcg acgatctgcc gcgctttacc
    24781 ttgtttaaga agaaacagtt cctgccactg attcagctat tgcgccttgg cgtattactc
    24841 aacaatcaac gtcaggcaac caccacaccg ccaacattga cactgattac tgatgacagt
    24901 cactggacac tgcgtttccc gcatgactgg tttagtcaga atgcgttggt actgcttgat
    24961 ctggaaaagg agcaagaata ctgggaaggc gtggctggct ggcggttgaa aattgaagaa
    25021 gaaagtacac ctgaaatcgc cgcttaatgc tttgcgggcc gacgagaaat gtcggcccgc
    25081 attattcagg cactttcgcg aatgggttc
//
LOCUS       DAJVUP010000046        25004 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.046, whole genome shotgun sequence.
ACCESSION   DAJVUP010000046 DAJVUP010000000
VERSION     DAJVUP010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25004
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.046"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..808
                     /locus_tag="OQQ75_001737"
     CDS             <1..808
                     /locus_tag="OQQ75_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HCS1976105.1"
                     /translation="PRWLMSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTG
                     GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVIN
                     LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF
                     AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN
                     GFSYWIYGCMGVLAALFMWKFAPETKGKTLEELEALWEPETKKTQQTATL"
     gene            complement(852..1250)
                     /gene="psiE"
                     /locus_tag="OQQ75_001738"
     CDS             complement(852..1250)
                     /gene="psiE"
                     /locus_tag="OQQ75_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HCS1976106.1"
                     /translation="MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLAD
                     VLFAPEQTSKYELVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHK
                     SPLDVLIYSAAILLLVITLWLCNSKRLKRE"
     gene            1520..1798
                     /locus_tag="OQQ75_001739"
     CDS             1520..1798
                     /locus_tag="OQQ75_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976107.1"
                     /translation="MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSN
                     VSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH"
     gene            complement(1845..3941)
                     /locus_tag="OQQ75_001740"
     CDS             complement(1845..3941)
                     /locus_tag="OQQ75_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS1976108.1"
                     /translation="MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPT
                     ARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTY
                     KDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
                     LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRL
                     KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN
                     DLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNVGLADPQIQAKGDTLYVTGE
                     QVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEP
                     LGHETKLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMG
                     MADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNL
                     QANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSA
                     KDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV
                     GGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR
                     KFQLYDMTSDRSVNFR"
     gene            complement(3956..4678)
                     /locus_tag="OQQ75_001741"
                     /pseudo
     CDS             complement(3956..4678)
                     /locus_tag="OQQ75_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418452.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
     gene            complement(4675..5313)
                     /locus_tag="OQQ75_001742"
     CDS             complement(4675..5313)
                     /locus_tag="OQQ75_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
                     /protein_id="HCS1976109.1"
                     /translation="MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDI
                     QNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKILLGGDNLI
                     EVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDET
                     LVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ"
     gene            complement(5427..5669)
                     /locus_tag="OQQ75_001743"
     CDS             complement(5427..5669)
                     /locus_tag="OQQ75_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976110.1"
                     /translation="MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSA
                     TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ"
     gene            complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="OQQ75_001744"
     CDS             complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="OQQ75_001744"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HCS1976111.1"
                     /translation="MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSAT
                     FDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALR
                     NRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDL
                     GPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN
                     AHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA
                     IGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEA
                     ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD
                     PATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW
                     GVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG"
     gene            8305..9654
                     /gene="lysC"
                     /locus_tag="OQQ75_001745"
     CDS             8305..9654
                     /gene="lysC"
                     /locus_tag="OQQ75_001745"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HCS1976112.1"
                     /translation="MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI
                     TNLLVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAA
                     ALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDVA
                     ALAELAALQLLPRLNDGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVD
                     IWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV
                     GSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR
                     HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI
                     GNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE"
     gene            9906..10178
                     /locus_tag="OQQ75_001746"
     CDS             9906..10178
                     /locus_tag="OQQ75_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3811 domain-containing protein"
                     /protein_id="HCS1976113.1"
                     /translation="MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKK
                     EYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR"
     gene            complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="OQQ75_001747"
     CDS             complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="OQQ75_001747"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HCS1976114.1"
                     /translation="MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD
                     QVKPGDIVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP
                     IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL
                     GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL
                     GEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN
                     GKRFTSPGRKKKGR"
     gene            11531..12478
                     /locus_tag="OQQ75_001748"
     CDS             11531..12478
                     /locus_tag="OQQ75_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HCS1976115.1"
                     /translation="MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR
                     GRDQGIVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQL
                     LDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
                     YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGIGSPAIR
                     DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQAR
                     YSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK"
     gene            12548..13354
                     /locus_tag="OQQ75_001749"
     CDS             12548..13354
                     /locus_tag="OQQ75_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1976116.1"
                     /translation="MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGG
                     DGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAP
                     AGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC
                     YAATKAALNSFTRSWSKELGKHGIRVVGIAPGILEKTGLRTPEYEEALVWTRNITVEQ
                     LREGYTKNAIPIGRAGRLAEVADFVCYLLSERASYITGVTTNIAGGKTRG"
     gene            13364..13771
                     /locus_tag="OQQ75_001750"
     CDS             13364..13771
                     /locus_tag="OQQ75_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sorbose transporter subunit IIA"
                     /protein_id="HCS1976117.1"
                     /translation="MVNAIFCAHGKLACAMLESVQMVYGDARVEAVEFVPGENAGDIV
                     AKLEKLVSIHNQDEWLIAVDLQCGSPWNAAAMLAMRNPRLRVISGLSLPLALELVDNQ
                     DSMNVDELCEHLTQIAKQTCVVWKQLATAEEDF"
     gene            13771..14265
                     /locus_tag="OQQ75_001751"
     CDS             13771..14265
                     /locus_tag="OQQ75_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HCS1976118.1"
                     /translation="MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRR
                     TLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVRQGVKIDTL
                     NIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ
                     LIAN"
     gene            14331..15128
                     /locus_tag="OQQ75_001752"
     CDS             14331..15128
                     /locus_tag="OQQ75_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HCS1976119.1"
                     /translation="MEISTLQIIAIFLFSCIAGMGSVLDEFQTHRPLIACTVIGLILG
                     DLKTGIILGGTLELIALGWMNVGAAQSPDSALASIISAILVIVGQQSIATGIAIALPV
                     AAAGQVLTVFARTITVVFQHAADKAAEEARFRTLDILHVSAFGVQALRVAIPALIVSL
                     FVSADMVSNMLSAIPEFVTRGLQIAGGFIVVVGYAMVLRMMGVKYLMPFFFLGFLAGG
                     YLDLSLLAFGGVGVIMALVYIQLNPQWRKAEPQLQATASTALDQLDD"
     gene            15139..15981
                     /locus_tag="OQQ75_001753"
     CDS             15139..15981
                     /locus_tag="OQQ75_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000437910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HCS1976120.1"
                     /translation="MEQRKITRSDLVSMFLRSNLQQASFNFERIHGLGFCYDMIPAIK
                     RLYPLKEDQVAALRRHLVFFNTTPAVCGPVIGVTAAMEEARANGAEIDDGTINGIKVG
                     LMGPLAGVGDPLVWGTLRPITTALGASLALSGNILGPLLFFFIFNAVRLAMKWYGLQL
                     GFRKGVNIVSDMGGNVLQKLTEGASILGLFVMGVLVTKWTSINVPLVVSQTHAADGST
                     VTMTVQNILDQLCPGLLALGLTLLMVRLLNKKINPVWLIFALFGLGIIGNALGFLSRF
                     FAPA"
     gene            16015..17244
                     /gene="sorE"
                     /locus_tag="OQQ75_001754"
     CDS             16015..17244
                     /gene="sorE"
                     /locus_tag="OQQ75_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-sorbose 1-phosphate reductase"
                     /protein_id="HCS1976121.1"
                     /translation="MKTTALRLYGKRDLRLETFDLPEMQEDEILATVVTDSLCLSSWK
                     EANLGENHKKVPDDVATNPIIIGHEFCGDILAVGKKWQHKFQPGQRYVIQANLQLPDR
                     PDCPGYSFPWVGGEATHVVIPNEVMEQDCLLAYDGETYFEGSLVEPLSCVIGAFNANY
                     HLQEGSYNHTMGIRPQGRMLILGGTGPMGLLAIDYALHGPVNPSQLVITDTDNDKLSY
                     ARKHYPSEPQTLIHYLNAADAAFDTLMALSGGHGFDDIFVFVPNEGLVTLASSLLATD
                     GCLNFFAGPQDKHFSAPINFYDVHYAFTHYVGTSGGNTDDMRAAVKLIEEKKVQAAKV
                     VTHILGLNAAGETTLELPAVGGGKKLVYTGKYLPLTSLTQIQDQALAAILARHQGIWS
                     GEAEQYLLTHAEAISHD"
     gene            17627..18316
                     /gene="pepE"
                     /locus_tag="OQQ75_001755"
     CDS             17627..18316
                     /gene="pepE"
                     /locus_tag="OQQ75_001755"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HCS1976122.1"
                     /translation="MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQ
                     TWDDYTAKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGL
                     LAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTN
                     ALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGE
                     EAVPLEAGHRF"
     gene            complement(18407..20038)
                     /locus_tag="OQQ75_001756"
     CDS             complement(18407..20038)
                     /locus_tag="OQQ75_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HCS1976123.1"
                     /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK
                     PLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTF
                     DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV
                     QVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTAALTAAGIISFPVALCLVIGANL
                     GSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVI
                     YFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALAN
                     AARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEE
                     LAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQ
                     LLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSL
                     HLGLLGDMQRLNSLFCSVAYSVLEQSDEDEGRDEY"
     gene            complement(20258..23941)
                     /gene="metH"
                     /locus_tag="OQQ75_001757"
     CDS             complement(20258..23941)
                     /gene="metH"
                     /locus_tag="OQQ75_001757"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HCS1976124.1"
                     /translation="MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFAD
                     WPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAE
                     INFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLV
                     AAYCESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAG
                     LPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLP
                     EIPVACRLSGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEAQDVARQQVE
                     NGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQG
                     KGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKIL
                     TEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVS
                     FSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRR
                     DDGTERLLELAEKYRGSKTDDTDNAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEA
                     RQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK
                     EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNA
                     DLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVY
                     VQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDF
                     AFDWQAYTPPVAHRLGVQEVEASIETLRNCIDWTPFFMTWSLAGKYPRILEDEVVGVE
                     AQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLR
                     QQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMV
                     KALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHT
                     EKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYA
                     RRKGMSVSDVERWLAPNLGYDAD"
     gene            24141..24965
                     /gene="iclR"
                     /locus_tag="OQQ75_001758"
     CDS             24141..24965
                     /gene="iclR"
                     /locus_tag="OQQ75_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418442.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate bypass operon transcriptional
                     repressor IclR"
                     /protein_id="HCS1976125.1"
                     /translation="MVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWIAESNGSV
                     ALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFMVGSSFLQSRNLL
                     AIVHPILRNLMEESGETVNMEVLDQSDHEAIIIDQVQCTHLMRMSAPIGGKLPMHASG
                     AGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHAL
                     GLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR"
BASE COUNT         5880 a         6611 c         6534 g         5979 t
ORIGIN      
        1 tcctcgctgg ctgatgtcac gcggcaagca agaacaggcg gaaagtatcc tgcgcaaaat
       61 tatgggcaac acgcttgcaa ctcaggcagt acaggaaatt aaacactccc tggatcatgg
      121 ccgcaaaacc ggtggtcgtc tgctgatgtt tggcgtgggc gtgattgtca tcggcgttat
      181 gctctccatc ttccagcaat ttgtcggcat caatgtggtg ctgtactacg cgccggaagt
      241 gttcaaaacg ctgggggcca gcacggatat cgcgctgttg cagaccatta ttgtcggagt
      301 tatcaacctc accttcaccg ttctggcaat tatgacggtg gataaatttg gtcgtaagcc
      361 actgcaaatt atcggcgcac tcggaatggc aatcggtatg tttagcctcg gtaccgcgtt
      421 ttacactcag gcaccgggta ttgtggcgct actgtcgatg ctgttctatg ttgctgcctt
      481 tgccatgtcc tggggtccgg tatgctgggt actgctgtcg gaaatcttcc cgaatgctat
      541 tcgtggtaag gcgctggcaa tcgcggtggc ggcccagtgg ctggcgaact acttcgtctc
      601 ctggaccttc ccgatgatgg acaaaaactc ctggctggtg gcccatttcc acaacggttt
      661 ctcctactgg atttacgggt gtatgggcgt tctggcagca ctatttatgt ggaaatttgc
      721 cccggaaacc aaaggtaaaa cccttgagga gctggaagcc ctctgggaac cggaaacgaa
      781 gaaaacacaa caaactgcta cgctgtaatc ttcctgtcca gcacgccgcg ccagttcggc
      841 gtgctgtctt tttactcccg cttcagccgt ttcgaattac acagccacag agtgatcacc
      901 agtaacagga tcgcagccga gtagatcaac acatccagtg gcgatttatg atcgacgatg
      961 atcaagcgca caatggcggt gatcccaata tagacaaagt aacgtagcgg gaagtgaaaa
     1021 ccggactgaa agtacttcac aatcagcgcg ataaattcga aatagagaaa gtaaaccacc
     1081 agctcatatt tgctggtttg ttctggcgcg aacagcacat ctgccagatg caccgtttct
     1141 ttgccgagga agacaaccaa aatcaggccg aggcacagca ggccaagatt gagtacggtc
     1201 tgcaaaatgg tggagataaa ctccacgcgc ggacgagaga gtgacgtcat agcagtacct
     1261 ccttcacagt ggcgagcttc ctgtataacg caaaaatgtg acggagatct atattttttg
     1321 tgtatgtttt gttcaacctg gatttggagc gcgcctccac caaagccgga tatacctacc
     1381 cgtaggccgg ataagccgcg cctggcggcg catccggcaa gacaaaccgc acccaagccg
     1441 gtaattcaaa aatcacccat tcaggtgatt cccagccacc agcaatgcgc gaaaaatcga
     1501 caatgttcct ctggaacaaa tgaaacgtaa cctgataaag gtggtaaaaa tgaagcctta
     1561 ttttgctgct ttgatgttat cagtctctgt tcttcctgct tatgctggtc cgctcggtac
     1621 tgctgataaa gccgacctac cgcaaagcaa tgtctccagc ccaatgatgg cccagtcgct
     1681 caggcaacca gacctgcaac cgatatcgac ggacaggaag acagaatgtt ttcgccttta
     1741 cacaccagat cgcaaaccgg gggtgaactg cgttcctgat ggctcgacag gccattaaga
     1801 atgaaggtgc cagtgagtgc gaaaactggc acctttccca tgacttagcg gaaattgacg
     1861 ctacggtcgc tggtcatgtc atacaactgg aacttacgcc caagttgctg accaccgtca
     1921 cgcgtcagcg gcgtccagcc aatcgccgca cggctgcgtg tcgggccaga cgagaagaga
     1981 tccaacggta ccgagacata cacgcctttg gtgaagtccc cttcgccgta ctcctctttc
     2041 aaaacgttgg tgatcgtggc atagccaccc accaccacgc cgctgtcaaa gcgtttggcg
     2101 atctccagcg tgccgccttt atcccctgcc agatactgcc cgacgctggc tttcaccaac
     2161 acgtcctggg cgaaagatgg cgtccagtag gcggtcagat gtccggtttt cacgctgtag
     2221 tcggtgaatt tcatcatatc ttttgcacta cgccagtcgc gctgtttaac gtagttggca
     2281 tccagaccaa acgcccagtt actgtccagc ggacgataca acacttcggc ccccgcaccg
     2341 ccaaacatgg tttcgagata acctccatag acctgaccgt agaagccgtt gcccagatgc
     2401 tggaagtagt tggcttgcag gttattcaca tagacatcgt tctgcacata ctcgcgcaca
     2461 tgggtacgaa cgcgcggtaa gtgcgagtcc tgcggcggat tggtgtagtt aaacttgtcg
     2521 tagttgttgg caagatttgc aaacaggctg ccggtggtca gcagatggtc cgtcagccac
     2581 aaatctgcca ttcccatcac gcccagctga tacatgtaaa agttttccgg gccaccgacc
     2641 gactggttca gcaccggatc gatatggaaa tcaaagcgtg atttgtcgat ataccagccc
     2701 tgctcggtgg actgcggaac cactggctcg acgcgttttt gcgccagctt cgtttcgtgg
     2761 cccaacggct ctccggcgag atgatttttc aggctggcga catcggtttc cgtcgtcacc
     2821 tgcggcatgt taagacgatt ttccgtaatg cggatcgttt tgatcccatc cggcagatcg
     2881 ttcatcacga tccgattagc acggatgatc ccttcgcgcg aatcacgata tttcacctgc
     2941 tcgccggtga catacagcgt atcgcctttc gcctggatct gcggatcggc aagtccgaca
     3001 ttgtatttca acagcgttaa ctgattcgcc accaccgaat gctgcaaaat ggcatcctgc
     3061 ggctgcggtt gatattgcgg gcgggcgtta tcgttgtaag acgggcgcag atcgttaaag
     3121 ttggtgcgca gcgtgacgcc aaacataaag gtgttgccac gttcatagct aaggttaacg
     3181 tcggcccaat cggtaacgcg ataaatcgca ccgacgttaa acttactttt ttgctccagc
     3241 ttcccggcaa aatcctgctg ataattattg ccttcatact ccagtttcag gcgcagcggt
     3301 tgccagggcg tctggtattc cacgccgcca aacagtgagg caggaccgtg gaacatctgg
     3361 ctaccgtcga tagatcccgc ctgtttgtag ctgttatcgc gatagcaata tttatcactg
     3421 gctgaacaga gcggattttt cacattaccg ctggtgccca gataacccca gcccaggccg
     3481 agcgtaaaat cgaacggccc ccaggctttg ctggcaacaa gatattccgc atcaaacagc
     3541 cccgtaccgc cgatatccct cgcaccaacc gccacttgcg gcagccagta actctcttcc
     3601 cacaaacgca gtttgagatc gaaggcttta tctttatacg tttgatcgcc agagaacgct
     3661 tcgacgctgc tgtactgccg ggtgcgcacg tcggtgtagc gcagcgttgt ttccagccac
     3721 gggaagagtt gcactgaagc tgagtaataa cggtactgat cgttatcgcg atagttcagg
     3781 ctcaactccc cttcccgcgc catgcgtgcg gtgggcgttt gtaataatcc tacgccaccg
     3841 aaatccgact gcgacgggcc aatgggcgca ggatatgttt cgccgtagca agccatgcta
     3901 atgcccagcg ccagtaagct aagcagatgt ctttttttca ttattggggt atccgctacg
     3961 tcagagtctg aagaatgtcg gcgttaaggg catcaggcgt ctcactccag acggagtccg
     4021 cgaggccaac ataaataatg ctgccgggca tcggctctac gtgacgcttg ttccagtaag
     4081 ccaccggcgc tttttgcgtg cgtccgtccg ggtaaaccac ccacgcgtag ctgcgatccg
     4141 caccgctaag caggttctgc ccggagagat agctcgccac gtcgcgacct ggagtgaatg
     4201 gctgcttgcc aggacggctg ataagcccga acaacgtgac cgtggacggc ggtggtccga
     4261 cccacagcgt gtagttgccc tgcaacggtg ggttaccgcg ttcggcaacg cgcacgatat
     4321 cgggatcaag attgattttt tgcctgcccg tcactttcaa cgcctgaatt tgctggcgta
     4381 aggcgttaat ggcggcggca tcgtcggcgc tggagtctgc ggcctgttca gccagccgtg
     4441 tcagcaacgc ctgctgctga cgcaatgctg ccgccgttgc cagctcttcg ctaatcaccg
     4501 caccgggcca ccagttgttt gccagccgcg gttagcctac cagatcgatt aaatgctctg
     4561 cgcctgttag tgttttggcc tcactgctgc cattgctgaa caccttgacg gttcctgccg
     4621 cgaagaccga tgacgctccc acactcaaaa gcaacgcgac aaaagtttgt ttaatcattg
     4681 ttttgccgcc ttgatgagag tggttttcac cgggaaataa tccgcgccga gatactgttc
     4741 cgactggcga atttgccctt cgctgtcgat ccagtagcgg ttatgccagc gcgcctggtc
     4801 ggtggagact tcttcgtcca gcacgcgaac cagggtttca tcgctgccga ctttgacggt
     4861 atcggtgcca tcccatttga agactgagcg tgcggtggcg tagcgtacct gctggtactc
     4921 ggtccagccc atcgtgcgcg tccatgttgc accatcaaca atttgtgcgg gtttaatcag
     4981 cgggtcggcg gcaaggttat tcacttcaat caggttgtcg ccgccaagca aaatcttcac
     5041 cagacgacca tgttgtgtga caagagtggc ttgatcctga gtgacccatt tttgttgtcc
     5101 gtcttcagcg aaggccagca ccacaaacaa ttgcggcccg ccattaagct gcatgtactg
     5161 gctggcgtag ggcatatttt gaatatcatc gtccgtcagc tgtacgcctg gcgtgccgaa
     5221 cagactgtcc cacagtgaat tgcccagctc tttagtcgtg gctgaacagg cctgtaatag
     5281 caggcagata agaatgagtg caggtcgctt cacgactctt ctccagaggg gcagaataac
     5341 cacaccggag tgtggttatg gtaaatccct tcatacttca agccacagat gcaatgactc
     5401 aaattatttt ggggatacat actttattac tgggtactgg tggtcgtggt tgtggtggtc
     5461 ccggtattag aaccatcacc gccaccggtt gccgcgagcg cgacacccac cgccgagctt
     5521 acggtgctga cgctggtcgc ggaggaacta cccgccgaaa ccgacgttgc tgccgaccct
     5581 gccgcttcgc ccacctgtac aggtgcagcc cacgcagaag tcgccgcaag cgcagatatg
     5641 gcaaaaatgc catacagaac ttttttcata acaatttccc ttcattgaat gaatggagat
     5701 ttacccaaaa acatttcggg cgggatcgag tatacacaac taaagcatgc gaattacggc
     5761 gcggggaatt agcgatggcg ttttaggata attggaatga atatcaaata taagcttcaa
     5821 cttatattta aataacaata aaaatcataa acttaaaata aaaacaaaag taattaatct
     5881 gcgtattctc cgaaataaac aacgattaaa aatctatttt aggattaacc tcacggtatg
     5941 atttccgtta aatcacagac aaggggattt atctgataaa acaatgccga cttattgtcg
     6001 gcattgtttt taaggttatt taactcctca tactatgcat taatgtcgat attggcatca
     6061 ggctccggtt gccggatgcg gcgtaaacgc cttatccggc ctacatatcg gcatcaggca
     6121 cgcatgatga ttaaccgcgc cacgctttat agcggttaat cagaccattg gtcgagctat
     6181 cgtggctgct gatttctttg tcatctttca gctctggcag aatacggttc gccagttgtt
     6241 tacccaactc cacgccccac tggtcgaagg taaagatgtt caggatcacg ccctgagtaa
     6301 agattttgtg ctcatacagc gcaatcaacg cccccaggct gaacggagtg atttcgcgca
     6361 gcaggatgga gttggtcggg cggttacctt cgaacacttt gaacggcacc acgtagtcaa
     6421 gcgttgccgg atctttaccc tgatcgcgat attcctgctc aaccacttcg cgggatttac
     6481 caaacgccag cgcttcggtc tgggcgaaga agttagacag cagtttctgg tggtgatcag
     6541 agagcgggtt atgggtgata gccggggcga tgaaatcgca cggtaccatt ttggttccct
     6601 ggtggatcag ctggtagaac gcgtgctgac cgttagtgcc tggttcaccc cagataatcg
     6661 ggccagtctg gtaatccaca acgttaccgt tacggtcaac atacttaccg ttggactcca
     6721 tattgccctg ctggaagtac gccgcgaaac ggtgcatata ctggtcatac ggcagaatcg
     6781 cttcagtttc cgcaccaaag aaattgttgt accagatgcc aatcagcgcc aacaggacag
     6841 gcaggttttt ctcggcaggc gtggtggaga aatgcttgtc catcgcgtgt gcgccagaaa
     6901 gcagttcaac gaagttatca aagccgatgg agagaacaat cgacaggcca atcgctgacc
     6961 acaaagagta acggccgccg acccagtccc agaactcgaa catgttggca gtatcaatac
     7021 caaactcgcc aacggctttg gcattggtgg aaagcgccgc aaagtgtttt gcaacgtgtt
     7081 tttcatcacc tgccgctttc aggaaccagt cacgcgcgct atgggcgttg gtcatagttt
     7141 cctgagtggt gaaggtttta gatgctacca agaacagcgt ggtttccggg tttacttttt
     7201 tcagcacttc agcgatgtga gtcccatcga cgttagaaac aaagtgcatg ttcaggtgat
     7261 ttttgtacgg acgcagtgct tcggtcacca tgtacgggcc gaggtcagaa ccaccgatcc
     7321 cgatgttcac tacgtcagtg attgctttgc cggtataacc cttccactca ccggagataa
     7381 tcgcttccga gaaggttttc atcttctcca gcaccgcgtt gacttccggc attacgtctt
     7441 tgccatcaac cagaatcggg gtattgctac ggttacgcag cgctacgtgc agcacggcgc
     7501 ggttttcagt gcggttgatc ttctcgccag agaacatcga cttaatcgcg cccgccagat
     7561 cgcactcttt cgccagatcc tgtaatttcg ccagcgtctc ttcagtgatg cggtttttgg
     7621 agtaatccac cagcatctga tcgtcgaatg ttgcggagaa cttagaaaaa cgatcgccgt
     7681 ctttagcaaa aagatcggcg atcgtaacgt ctttcatttc atcgaagtgt ttctgtagtg
     7741 cctgccaggc agcggtctgc gttggattga tgtttttcat tagcaatact cttctgattt
     7801 tgagaattgt gactttggaa gattgtagcg ccagtcacag aaaaatgtga tggttttagt
     7861 gccgttagcg taatgttgag tgtaaaccct tagcgcagtg aagcatttat tagctgaact
     7921 actgaccgcc aggagtggat gaaaaatccg catgaccccg tcgttgacaa ccgccccgct
     7981 caccctttat ttataaatgt actacctgcg ctagcgcagg ccagaagagg cgcgttgccc
     8041 aagtaacggt gttggaggag ccagtcctgt gataacacct gagggggtgc atcgccgagg
     8101 tgattgaacg gctggccacg ttcatcatcg gctacagggg ctgaatcccc tgggttgtca
     8161 ccagaagcgt tcgcagtcgg gcgtttcgca agtggtggag cacttctggg tgaaaatagt
     8221 agcgaagtat cgctctgcgc ccacccgtct tccgctcttc ccttgtgcca aggctgaaaa
     8281 tggatcccct gacacgaggt agttatgtct gaaattgttg tctccaaatt tggcggtacc
     8341 agcgtagctg attttgacgc catgaaccgc agcgctgata ttgtgctttc tgatgccaac
     8401 gtgcgtttag tagtcctctc ggcttctgct ggtatcacta atctgctggt cgctttagcg
     8461 gaagggctgg aacctggcga gcgattcgaa aaactcgacg ctattcgcaa catccagttt
     8521 gccattctgg aacgtctgcg ttacccgaac gttatccgtg aagagattga acgtctgctg
     8581 gagaacatta ctgttctggc agaagcggcg gcgctggcaa cgtctccggc gctgacagat
     8641 gagctggtca gccacggcga gctgatgtcg accctgctgt ttgtcgaaat cctgcgcgaa
     8701 cgcgatgttc aggcacagtg gtttgatgta cgtaaagtga tgcgtaccaa cgaccgattt
     8761 ggtcgtgcag agccagatgt agccgcgctg gcggaactgg ccgcgctgca gctgctccca
     8821 cgcctcaatg acggcttagt gatcacccag ggatttatcg gtagcgaaaa taaaggtcgt
     8881 acaacgacgc ttggccgtgg aggcagcgat tatacggcag ccttgctggc ggaggcttta
     8941 cacgcatctc gtgttgatat ctggaccgac gtcccgggca tctacaccac cgatccacgc
     9001 gtagtttccg cagcaaaacg cattgatgaa atcgcgtttg ccgaagcggc agagatggca
     9061 acttttggtg caaaagtact gcatccggca acgttgctac ccgcagtacg cagcgatatc
     9121 ccggtctttg tcggctccag caaagaccca cgcgcaggtg gtacgctggt gtgcaataaa
     9181 actgaaaatc ctccgctgtt ccgcgcgctg gcgcttcgtc gcaatcagac tctgctcact
     9241 ttgcacagcc tgaatatgct gcattctcgc ggcttcctcg cggaagtttt cggcatcctc
     9301 gcgcggcata atatttcggt agacttaatc accacgtcag aagtgagcgt ggcattaacc
     9361 cttgatacca ccggttcaac ctccactggc gatacgttgc tgacgcaatc tctgctgatg
     9421 gagctttccg cactgtgccg ggtggaagta gaagaaggtc tggcgctggt cgcgttgatt
     9481 ggcaatgacc tgtcaaaagc ctgcggcgtt ggcaaagagg tattcggcgt actggaaccg
     9541 ttcaacattc gcatgatttg ttacggcgca tccagccata acctgtgctt cctggtgccc
     9601 ggcgaagatg ccgagcaggt ggtgcaaaaa ctgcatagta atttgtttga gtaaatactg
     9661 tatggcctgg aagctatatt tcgggccgta ttgattttct tgtcactatg cttatcaata
     9721 aacgagcctg tactctgtta accaacgtct ttatcgagaa taattgcctt taattttttt
     9781 atctgcatct ctaattaatt atcgaaagag ataaatagtt aagagaaggc aaaatgaata
     9841 ttatcagttc tgctcgcaaa cgaattcccg tacactgaac tctctggctc actgagggca
     9901 ccatcatggc actcccccgt attacccaaa aagagatgac tgaacgcgag cagcgtgaac
     9961 ttaaaacact gctggatcgg gcgcggattg cgcatggtcg cgtactgacc aactccgaaa
    10021 ccaacagcat taagaaagag tacatcgata aattaatggt cgagcgtgag gctgaagcga
    10081 aaaaagcccg ccaattgaag aaaaagcagg cttataaacc ggatcctgaa gcgtcattta
    10141 gctggtcagc aaatacgtcg acgcgcggca ggcgctaatg aacaatcaac gcctgagatt
    10201 ttcactcgtc tgtgtggaca caatcttccc ctcaccctaa ccctctcccc gaaggggcga
    10261 ggggactgtc cgagctcttt ttggacgttt tcatcagtct gaggcgttaa tcagcgtccc
    10321 ttctttttac gccccggcga ggtaaaacgc ttaccgttgg acgccgggcg accgcctttt
    10381 tccgccgttt tttccatctt aacgactgga cgtttgatgc ccgctgtttt cggtttggcc
    10441 ttcgctttag gttttgcctc ggaagaggaa ttttcgatga gcttaaagag gtcgattaac
    10501 tcatcgtcgg ttaaatcgcg ccactccccc agcggaatgc cgcttaagct gacgttcata
    10561 atgcgcgtac gttccagctt tttcacttca tagccgaaat gctcgcacat gcgccggatc
    10621 tgacggttca gcccctgcac cagggtaatg cggaagacaa acggcgcttc ttttttgact
    10681 ttgcactttt tcgtcaccgt cccgaggatc ggcacccccg cccccatacc acgaataaat
    10741 tcatcggtaa tcggtttatc gaccgtcacc agatactctt tctcatgatc gttacccgca
    10801 cggaggatct tattcaccag atcgccgtga ttggtgagga aaatcagccc ctgggagtct
    10861 ttatccaggc ggccaatcgg gaacacgcgt ttgctgtggt taacgaaatc gacaatgtta
    10921 tcgcgctcgc catcttcggt ggtgctgaca ataccgacgg gcttgttcag ggcgataagt
    10981 accaaatctt cggcttcccg aggctcaatc aactgaccgt ttactttcac aatgtcgccg
    11041 ggtttcacct gatcgccaat ggtggctcgc ttgccattaa ggaacacatt gccttgctcg
    11101 atatagcgat ccgcttcgcg gcgtgagcaa attccgcttt cgctgatgta tttatttaaa
    11161 cggactgatg agtcgggcag cataaattct cctgtaaaac gcggaatata ccgtacctct
    11221 tagcggggaa aaacagggtt atgcggcaac gtcgaaatta aatgtgatct gccacgcctt
    11281 ttatcacaaa agtgtctccg gaagtacgat gcaaatttgc ctggcaaaat aaggataatc
    11341 aacatattac gaatcgctgc acacctgtgc tgatgactac tacgcagaga aacaaatgtg
    11401 caagagaaag cgctatatct ccccatgcaa agagtgaaaa atcgctttga aaggccctca
    11461 tgatggggtt atatcagatc aagcggtgag aaagcgtatt tgcacaaatg tgcagaacca
    11521 ggaggcggca atggaaaaca gtgacgatat ccgtttgatt gtgaagattg cccaactcta
    11581 ttacgaacag gatatgacgc aggcgcaaat cgcgcgcgaa ctgggtattt accgcaccac
    11641 catcagccgc ttgcttaaac gaggccgcga tcagggaatt gtcaccatcg ccatcaacta
    11701 tgactacaac gaaaatctct ggctggagca gcaactgaag caaaagtttg gcctgaaaga
    11761 cgttgtggtg gtgtcgggaa atgatgagga tgaagagact caactggcga tgatggggtt
    11821 acacggcgcg caactgctgg atcgcttgct ggagcctggc gatattgtcg gtttttcctg
    11881 gggtcgcgcg gtgagcgcac tggttgaaaa cttgccgcag gcggggcaat cgcggcagtt
    11941 aatctgcgta ccaattattg gcggaccgtc cggtaaactc gaaagccgct atcatgtaaa
    12001 cacattaacc tacagcgcgg cagcgaagct gaaaggggaa tcgcatctcg cggattttcc
    12061 ggctctgctg gataacccat taattcgtaa tgggatcatg cagtctcagc actttaaaac
    12121 catctctgcc tactgggata atctggatgt cgccctggtg ggaattggct caccggccat
    12181 tcgcgacggc gctaactggc atgcgtttta tggtggtgaa gagagtgacg acctgaatgc
    12241 ccgccaggtt gctggcgata tttgctcgcg cttttttgat attcacggcg caatggttga
    12301 aacgaatatg agcgaaaaaa cactctctat cgaaatgaat aaattaaagc aggcacgata
    12361 ttccattggc attgccatga gtgaagaaaa atacagcgga attgttggtg cactgcgtgg
    12421 aaaatatatt aattgtctgg taacgaatag cagcacagct gaactattac tgaaataaaa
    12481 atcttcccga tgtttagcgt aataaaaatt acggcggggc cctattatct aaaatcagga
    12541 gtctgttatg caaacgtggt taaatttgca ggataaaatc attattgtca ccggcggcgc
    12601 atccggtatt ggtctggcga ttgtagagga attattagca caaggcgcaa acgtacagat
    12661 ggtagatatt cacggtggcg atggtcaata tgaaggtcat aaaggctatc agttttggcc
    12721 gaccgatatt tccagcgcca aagaggtaaa tcatacggta gcggaaatta tccagcgttt
    12781 tggtcgcatc gacggtctgg tcaataacgc cggggtcaat ttcccgcgtc tgctggtcga
    12841 tgagaaagcg cctgccgggc agtatgaact caacgaagct gcattcgaaa aaatggtcaa
    12901 tatcaaccag aaaggcgttt ttctgatgtc gcaggcggtg gcgcgacaga tggtcaaaca
    12961 acatgatggc gtgattgtga atgtttcctc agaaagtgga ctggaaggct cagaaggcca
    13021 aagctgttac gccgctacca aagccgcgct taatagcttc acgcgatcct ggtcgaaaga
    13081 attgggtaaa cacggtatcc gtgtggtcgg tatcgcgccg gggattctgg aaaaaacagg
    13141 actgcgcacg ccggaatatg aagaagcgct ggtgtggacg cgcaatatca ccgtcgagca
    13201 gctgcgtgaa ggctatacca aaaacgccat tcctattggg cgcgccggaa gattagcaga
    13261 agtcgctgat tttgtttgtt atctgctgtc tgaacgcgcc agctatatca ccggagtaac
    13321 cactaacatt gcgggcggca aaacgcgcgg ctaaggaggc tttatggtca atgccatttt
    13381 ttgcgcccac ggcaaattag cttgcgccat gctggaatcg gttcagatgg tgtacggcga
    13441 cgccagggtc gaggcagttg aatttgtgcc cggcgagaac gccggagaca tcgtagcaaa
    13501 gctggaaaag ttagtaagca ttcacaatca agatgagtgg ctgattgccg tggatttaca
    13561 gtgcggcagc ccgtggaatg cggcagcgat gcttgcgatg cgcaatcctc gtctgcgggt
    13621 aatcagcggc ctttctctgc cgctggcgct cgaactggtt gataaccagg acagcatgaa
    13681 tgttgatgaa ctgtgtgaac acctgacgca aatcgcaaag caaacctgcg ttgtctggaa
    13741 acaactggca acggcagagg aggatttctg atgaacatta cgctcgcccg cattgatgac
    13801 cgcctgatcc acggtcaggt cactaccgtc tggtcgaaag tggctaacgc ccagcgcatt
    13861 attatctgca atgacgaagt ttataacgat gaagttcgcc ggacattatt gcgtcaggct
    13921 gcgccaccgg gaatgaaggt taacgtggtc aatattgaaa aagccgtcgc tgtttatcac
    13981 aacccgcaat atcaggacga aaccgttttt tatcttttca ctcgcccaca ggatgcctta
    14041 gcgatggttc gccaaggggt aaaaatagac accctaaata ttggcggcat ggcctggcgg
    14101 cccggtaaaa aacagttaac caaagcggtt tcattagatg atgatgatat taacgcattt
    14161 catgagttaa ataatcttgg cgtcatactg gatttacgcg tcgtagcgtc agatccctca
    14221 atcaatatta tcgacaaaat aaacgaacag ttaatcgcaa attaaataat agcgcttgtg
    14281 tacatatgct ttaacaggca gggatgacga cacttaaaag gtgaaaaatc atggaaataa
    14341 gtaccctaca aatcattgct atatttcttt tttcctgtat tgccggaatg ggcagcgtgc
    14401 tggatgaatt tcagactcat cgcccgttaa ttgcctgtac ggtgattggt ttaattctcg
    14461 gtgatttaaa aaccggaata atactcggtg gtacgctgga attgatagct ctcggctgga
    14521 tgaacgtcgg cgcggcgcaa tctccggatt ctgcactcgc cagcataatc tccgccattc
    14581 tggttatcgt tggtcagcaa agcatcgcca ccggaatcgc catcgcgttg cctgtggctg
    14641 cggcaggcca ggtgctgact gtgtttgccc gtaccatcac cgtagtgttc cagcacgcgg
    14701 cggataaagc agcggaagaa gcacggtttc gcactctcga tattctgcat gtctccgcgt
    14761 ttggcgtgca ggcgctgcgc gttgctattc cggcactgat tgtctcactg ttcgtcagcg
    14821 ccgatatggt gagcaatatg ctgagcgcga taccggaatt cgtgacgcgc ggtctgcaaa
    14881 ttgctggcgg ttttatcgtg gtggtcggtt acgccatggt gctacgtatg atgggcgtga
    14941 aatatttgat gcctttcttt ttcctcggtt tcctcgcagg tggctacctc gatctcagtc
    15001 tgctggcgtt cggtggcgtc ggcgtgatca tggccctggt ctacatccag ctaaatccac
    15061 agtggcgtaa agctgaacct caactccagg ccaccgcctc caccgccctt gaccaacttg
    15121 acgattaacg gagccatcat ggaacagaga aaaattacac gcagcgatct ggtgagcatg
    15181 tttctgcgct ccaacctgca acaggcgtcc tttaactttg aacgtattca cgggctgggt
    15241 ttttgctacg acatgatccc cgccatcaaa cgactttacc cattaaaaga ggatcaggtt
    15301 gcggcgctca ggcgacacct ggtgttcttc aataccacgc cagccgtatg tggcccggtc
    15361 atcggcgtca ctgccgccat ggaagaggcg cgggccaacg gcgcggaaat tgatgacggt
    15421 accattaacg gcatcaaagt cggtctgatg ggaccattgg caggagttgg cgatccactg
    15481 gtctggggaa cgctgcgccc gattaccacc gcgctcggcg catctctggc actttcgggc
    15541 aacattctcg gcccgctgct gttcttcttt attttcaatg cggtgcgtct ggcgatgaag
    15601 tggtatggcc tacagctcgg ctttcgcaaa ggggtgaata tcgtcagcga tatgggcggg
    15661 aatgtgctgc aaaaactcac cgaaggcgcg tcgattctcg gactgtttgt gatgggcgtg
    15721 ctggtcacca aatggacgtc aatcaacgta ccgttggtgg tttcacaaac gcatgccgcc
    15781 gatggctcca ccgtcaccat gaccgtgcag aacattctcg accaactttg ccctggtttg
    15841 ctggcgctcg gtctgacgct gcttatggtt cgtctgctca acaaaaaaat taacccggta
    15901 tggctgattt tcgccctgtt tggcttaggg attatcggta atgcgctggg cttcctgtcc
    15961 agattcttcg ccccggcatg actgccgggg ccatcgctca acatgaggtg gtttatgaaa
    16021 acaacagctc tgcgtcttta tggtaaacgt gatttacgcc tggaaacctt tgaccttcct
    16081 gaaatgcagg aggatgaaat cctcgcgacg gtggtcactg acagcctgtg cctctcttcc
    16141 tggaaagagg ccaatctggg tgaaaaccat aaaaaagtac ccgacgatgt ggcgaccaac
    16201 cccatcatca tcggccacga gttttgcggc gatattctgg ccgtgggtaa aaagtggcag
    16261 cacaaattcc agccgggtca gcgttatgtg attcaggcca acctgcaact ccccgaccgc
    16321 ccggactgcc ccggctactc cttcccgtgg gtgggcggcg aagccacgca tgtagttatt
    16381 cccaacgagg tcatggaaca agattgcctg ctggcatacg acggcgaaac ctattttgaa
    16441 ggctcactgg ttgaaccgct ttcctgcgtg attggcgcgt tcaacgccaa ctatcatctt
    16501 caggaaggta gttataacca cacgatgggg attcgcccgc aagggcgcat gctgatcctc
    16561 ggcggcaccg gaccaatggg actgttggcg attgattatg cgctacatgg acccgttaac
    16621 ccgtcgcagc tcgtcattac cgataccgac aacgataaat tgagttatgc gcgcaagcac
    16681 tatccatcag aaccgcaaac actgattcat tatctcaatg ccgccgatgc agcatttgat
    16741 acgctaatgg cgctgagtgg cggtcacggc ttcgatgata ttttcgtctt tgtgcctaat
    16801 gaaggactgg tgactctcgc ctcttccttg ctggcgacag atggttgcct gaatttcttc
    16861 gccggaccgc aggataaaca tttcagcgcg ccaattaatt tctacgatgt gcattatgca
    16921 tttacccact acgtgggcac gtcaggcggc aataccgacg acatgcgcgc ggcggtcaaa
    16981 ctgattgaag agaaaaaagt gcaggccgca aaagtggtaa cacatattct tgggctgaat
    17041 gccgcgggcg aaaccacgct tgaattgcct gccgtcggcg gcggcaaaaa gctggtgtat
    17101 accgggaaat acctgccgct gacgtcactc acgcagattc aggatcaagc actggcggcg
    17161 attctggcgc gtcatcaggg gatctggtcc ggtgaggcgg agcaatatct gctcactcat
    17221 gcagaggcaa tttcccatga ttaatcgcgc tacttaactc tgcatgtcgc tggctggtcg
    17281 ccgcggcaac ttcgcgacct gatgtgcggc tgattgctga agcggcccaa tgtgcacgag
    17341 aaggataaaa aaacatcagc gccttaaggg gcgctcaaat tggtggcaaa gtacacattg
    17401 tttatgccgg atgcggaata aagccttatt cggcctacat aatctcgaaa attcaatata
    17461 ttgcagttat ctggtaggcc tggtaagcgt agcgcatcag gcaatgctgt gtttgtcatc
    17521 agtctcagct cccggtgcaa tacgtgacat cgtgagccat gtcagtaagt ggttaaattc
    17581 gcagtggtag catgccttcc gtgatttctt actaaccgga gaagtaatgg aactgctttt
    17641 attgagtaac tcgacgctgc cgggtaaagc ctggctggaa catgcactgc cgctaattgc
    17701 tgaacagttg cagggtcgcc gctcagcggt gtttatccct ttcgctggcg taacgcagac
    17761 ctgggatgat tacacagcga aaacggctgc ggttctcgct ccgctgggtg tttctgtcac
    17821 cggtattcat agcgttgtcg atcccgttgc cgcgattgaa aatgctgaga tcgtgattgt
    17881 cggcggcggg aatactttcc agttgctgaa acagtgccgc gagcgcgggc tgctggcacc
    17941 aattactgac gtggttaaac gtggtgcgct gtatattggc tggagcgcag gcgctaacct
    18001 tgcttgccca accattcgta ccaccaacga tatgccgatt gtcgatccgc aaggtttcga
    18061 tgcgctaaat ctgttcccgt tgcaaatcaa cccgcacttc accaacgcgc tgccggaagg
    18121 ccataaaggt gaaacccgtg agcagcgtat tcgcgaactg ctggtcgtcg cgccagaact
    18181 gacgattatt ggtctaccgg aaggtaactg gatcacagtg agtaaaggtc acgctacgct
    18241 gggtggcccg aacaccacct atgtgtttaa ggccggtgaa gaagcggttc cgctggaagc
    18301 tggtcaccgt ttttaagtga attgccggat gcatgatccg gcatcttgtt catagtgcct
    18361 gatgcgacgc ttgacgcgtc ttatcaggcc tacaggattc acaatattaa tactcgtccc
    18421 gtccttcatc ttcatccgac tgttccagca cactgtaagc caccgaacaa aacagcgagt
    18481 tcaggcgctg catatctccc agtaagccta aatgtagcga actggtttca atgctctgca
    18541 cgttttgctg atgcaggcga tcgacgtggg cgtgggaata gcggcgatta agaatgcgaa
    18601 agcgatgctt actacggcgc aaacgacgag cgctggtgac atcgccagag aagaacaccg
    18661 acattgccag ctttaaatta ctgagcaatt gctcatagag cgcatccagt tccttcaacc
    18721 catcaagcga aaatgcccgc cgtgctgcca gtgatttgtc agcaatttcg ctgcccatgc
    18781 gctcgacgat atcggaggcc tgttcaaggt tgagcgacat ttcaataatc tccgcccagc
    18841 ggcgcgactc ttcctccgcc agctcttctt ttggcatccg cgccagatac agcttaatgg
    18901 cggtgtagag aacgttgata tcatctgcca gcttacgcag ctctttctcc tgccgtggct
    18961 caccgtgcat cactttattc aacccttcca tcatctgttc catggcgtcg ccaatgcgca
    19021 gggtttcgcg cgcggcgttc gccagagcaa gcgtgggcgt atccagcgcg ctgacatcca
    19081 gatgtttagg ccgtagctgg gtatccagtt ccggttcatc gcgaataatc gttttgcaaa
    19141 accgtgccat cgggtcaaca aatggcagca tgaccaggca acgtacaagg ttgtagaaga
    19201 cgtggaaata gatcaccagt tccgcttttg gcaatgacag cttccccatt gtctctgcca
    19261 gcaaatggac aaacggcagg ataatcaggc tacccaccag cttaaacagc agactaccca
    19321 gcgcgacacg gcgggctgcg gcattggcgg cactgttgtt gagcatcgcc agcaggccgg
    19381 aaccgaggtt agcaccaatc accagacaga gcgccacggg gaaggagata atgcctgcgg
    19441 cggtcagagc cgcggtcagc agtacagcag caaggctgga gtagctgata atggcgaaca
    19501 tcgcgccaat cagcgcatcc agcagaatat cgccggtcag cgaggcaaag atcacctgaa
    19561 cgccgtttgc ctgggtgatc ggcgttacgg cctgcacaat caactccagc gccagcaaaa
    19621 tcagcccaag accaataccg acgcggccca gttgcccggc gcgtgactgt ttgcgtccga
    19681 ggaaaaaaat cacgccgata aaaataagta acggtgacag ccaggataag tcgaaggtga
    19741 gaatacgcgc cattagcgcc gtcccgacat ctgcccccag cacaatgacc agagccggtg
    19801 cgagggctac cagatcctga gcgacgaacg aggtcaccag catggtggtg gcattactgc
    19861 tctgtaccag tgcggtaacg ccgatccccg cgcaaaaggc gagcggcttt ttttcgacgc
    19921 tccggctaag gacagtacgc aaacgcgcgc cgaagacgcg cattacgccg gttcgaacaa
    19981 tatgagtccc ccagaccagc agggcgacgg cagaaagcag gtgaagcagc gttaacacga
    20041 gttcaggttc tccttatcgt tatatgttcc tgaagcaatt gaatgaccaa aggaccggaa
    20101 acacgctgac tggcatcttt actgtgcctt ttgacattcg tttttccggc taagattatt
    20161 ccagcctgat tccagtataa gtgtttcata ttaataaaga gacagggcac tcattgagcg
    20221 ccctgtttgt tgtaaggaaa agtgacagat ttgtgaatca gtccgcgtca taccccagat
    20281 tcggtgccag ccagcgctca acatctgaga cgctcatacc tttacggcgg gcatagtctt
    20341 caacctgatc gcgctgaatt tgcgccacgg cgtagtactt gctgtccggg tggctgaaat
    20401 accaacccga aaccgatgca ccgggccaca tggcgaaaga ttctgtgagt ttcatgccgg
    20461 tatgtttttc cacttccagc agctcccaga tggtggcttt ttccgtatgt tccgggcagg
    20521 ccgggtagcc cggtgccgga cggatgccct ggtagttttc gcggatcagt tcttcgttgc
    20581 tgaggttctc gttcggcgca tagccccagt agactttacg cacacgctca tggagatact
    20641 ccgcaaaggc ttcggctaaa cggtcggcaa gcgctttcac catgattttg ttgtaatcat
    20701 cgtgctgcgc ttcaaaggca tcagccagtg cgtcctcttc cagcccgcca gtcacggcaa
    20761 atgcgccgat gtaatctgct ttaccagaaa gcttcggcgc aacaaagtca gcgagacagt
    20821 agttagcgaa tcccgttttt tcggtctgtt gacgcagatg gtggctgaca ttgatcacat
    20881 gggtgcgcgt ttcgtcacgg tagatttcaa tgtcatcgcc cacacggttt gccgggaaca
    20941 ggcccaccac gccacgcgga ttcagcgttt tctcggcgct taatttatcc agcatgtcgt
    21001 tggcgtcttt aaacagccgc tgcgcctcaa cgcccaccac ttcatcttcc agaatgcgcg
    21061 gatacttccc ggccagcgac caggtcataa agaacggtgt ccagtcgatg caattacgca
    21121 gagtttcgat gctggcttca acttcctgca cgccgagacg gtgcgccacc ggcggcgtgt
    21181 aagcctgcca gtcaaaagcg aagtcgttat cgcgcgccgc ttccagcgtg accggtggtg
    21241 tgcgcggttt cttgcgcccg tgctgaatac gtacggtttc gtactccttg cgggtacgag
    21301 cgacaaaatc atcgcgctga gtatcggaaa gcagcgccgc caccacacca acggtgcgcg
    21361 aggcattctg cacatacacc gtcgggccgc tgtagttctg ctcaattttc accgccgtgt
    21421 gcgcttttga ggtggtcgcg ccaccgatca gtaacggaat ggtgaagccc tgacgctcca
    21481 tctctttcgc cacgttaacc atctcgtcca gcgacggcgt gataagcccc gaaaggccaa
    21541 tcaaatcagc attcacttct ttagcagtac ggagaatttt ttccgcaggc accatcacgc
    21601 cgagatcgac aatttcgtag ttgttacatt gcagcaccac gccaacgata tttttaccga
    21661 tatcgtggac gtcgcccttc acggtggcga tcaccatctt gccgttggtt ttgccctgct
    21721 ctttgctggc ttcaataaac ggttcgagat acgccaccgc ctgtttcatg acgcgcgccg
    21781 atttgaccac ctgtggcagg aacattttgc cttcgccaaa cagatcgccg accacgttca
    21841 tgccgtccat caacgggcct tcaatcactt caatcgggcg cgtagcctgc tggcgggctt
    21901 cttcggtatc ctgctcgata aactcggtaa tgcctttgac cagcgagtat tccagacgtt
    21961 tattcacttc ccacgagcgc cactccgcct gctgggcgtt atcggtgtcg tcggttttgc
    22021 tgccgcgata tttctcggca agctccagta aacgctcagt gccatcgtca cgacgattaa
    22081 gaatcacatc ttccaccgcg tcgcgcagtt cagcgggtag gtcgtcgtaa atcgccagtt
    22141 gccccgcgtt gacgatcccc atatccatgc cattgcgaat agcgtagtag aggaacactg
    22201 cgtgaatggc ttcgcgcacc ggatcgttgc cacggaatga gaaagaaacg ttagatacgc
    22261 cgccggaaat cagcgcgtgc ggcagttcgc gtttgatgtc ttcacacgcg ccgataaagt
    22321 cctgcgcgta gttgttgtgc tcttcaatac cggtggcgac cgcgaagatg ttcgggtcga
    22381 agatgatatc ttctggcggg aagccaacct cttcggtgag gattttgtac gcccgacggc
    22441 aaatctcgat tttccgtgcg cgagtatcgg cctgtccctg ttcatcaaag gccatcacca
    22501 ccactgccgc accgtagcga cgcaacaatt tcgcgtgatg gataaaggcg tcgacgccct
    22561 ctttcatcga gattgagtta acaatgcctt tgccctgaat acacttcagc cctttttcga
    22621 taacgtccca ttttgaggag tcgatcataa tcggcacgcg agcgatatcc ggttcaccgg
    22681 caatcagatt gagaaaacgc accatcgccg cttcggcatc gagcatccct tcatccatgt
    22741 tgatatcgat aatctgcgcg ccgttttcca cctgctgacg cgccacatcc tgcgcctcgc
    22801 tgtatttctc ttctttgatc aggcgcttga acttagcaga gccggtgacg ttggtgcgtt
    22861 cacccacgtt cacaaacagg ctatcgtcgc caatgttcag cggctccagg ccagacaaac
    22921 ggcaggctac gggaatttcc ggcagtttgc gcggcgctaa tccttctact gcacgactca
    22981 tcgctgcaat atgttgcggc gtggtcccgc agcaaccacc gacgatattg agaaagcccg
    23041 cttgcgccca ttcacgtatc tgttttgcca tcgtgtcggc gtcgagatcg tattcaccaa
    23101 aggcgttagg cagcccggcg ttcgggtggg cggtgacgta gcattccgca atccgtgata
    23161 gttcctgcac gtactggcgc agttcatcgg gccccagcgc acagttcagg ccaaaggtta
    23221 gcgcttcggc gtggcgcaat gagttgtaaa atgcttcggt ggtctgcccg gagagcgtgc
    23281 gcccggaggc gtcggtgatg gtgccggaga tcataatcgg cagctcaacg cccagcgctt
    23341 caaactccgt tttcaccgca aaaaccgccg ctttggcgtt aagggtgtcg aaaacggttt
    23401 caatcaggat cagatccgca ccaccttcca ccagcgcttt ggtggattcg caataggccg
    23461 ccaccagctg gtcaaaagtg atgttgcgga atgccggatc gttgacgtcc ggagaaatag
    23521 acgccgtgcg gttggttggg ccgagaacac cggcaacgta gcgcggtttc tccggcgtgc
    23581 gcgcggtcca ctcgtcagca caggcgcgcg ccagtttcgc cgccgcaaag ttgatttccg
    23641 ccgacaggga ttccatctgg taatccgcca tcgcaatggt cgtggagttg aaggtgttgg
    23701 tttcgatgat atccgcgccc gcttcaaagt aggcgttgtg gatagcggcg atcacttccg
    23761 gtttgctgag caccagcagg tcgttgttgc ctttgagatc gcatggccag tcggcaaagc
    23821 gttcaccacg aaaatcggct tcgttcagtc gataactctg gatcatggtg cccataccgc
    23881 cgtccagcac cagaatacgt tcatttaact gcgcacgcag ttgttccact ttgctgctca
    23941 cacttgctcc cgacacgctc aacccagatt taataaaaat tcaacaaacc atactggcat
    24001 aaacgcatct gtggtaaaag cgaccaccac gcaacatgag atttgttcaa cattaactca
    24061 tcggatcagt tcagcaacta ttgcattagc taacaataaa aatgaaaatg attcccacga
    24121 tgcagaaaaa ggagactgtc atggtcgcac ccattcccgc gaaacgcggc agaaaacccg
    24181 ccgttgccac cgcaccagcg actggacagg ttcagtcttt aacgcgtggc ctgaaattac
    24241 tggagtggat tgccgaatcc aatggcagtg tggcactcac ggaactggcg caacaagccg
    24301 ggttacccaa ttccacgacc caccgcctgc taaccacaat gcaacagcag ggtttcgtgc
    24361 gtcaggttgg cgaactggga cactgggcaa tcggcgcaca tgcctttatg gtcggcagca
    24421 gctttctcca gagtcgtaat ttgttagcaa ttgttcaccc tatcctgcgc aatctaatgg
    24481 aagagtctgg cgaaacggtc aatatggagg tgcttgatca aagcgatcac gaagcgatta
    24541 ttatcgacca ggtacagtgt acgcatctga tgcgaatgtc cgcgcctatc ggcggtaaat
    24601 tgccgatgca cgcttccggt gcaggtaaag cctttttagc ccaactgagc gaagaacagg
    24661 tgacgaagct gctgcaccgc aaagggttac atgcctatac ccacgcaacg ctggtgtctc
    24721 ctgtgcattt aaaagaagat ctcgcccaaa cgcgcaaacg gggttattca tttgacgatg
    24781 aggaacatgc gctggggcta cgttgccttg cagcgtgtat tttcgatgag caccgtgaac
    24841 cgtttgccgc aatttctatt tccggaccga tttcacgtat taccgatgac cgcgtgaccg
    24901 agtttggcgc aatggtgatt aaagcggcga aggaagtgac actggcgtac ggtggaatgc
    24961 gctgactttt tctggcgggc agaggcaata ttctgcccat cata
//
LOCUS       DAJVUP010000047        24915 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.047, whole genome shotgun sequence.
ACCESSION   DAJVUP010000047 DAJVUP010000000
VERSION     DAJVUP010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24915
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.047"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(38..376)
                     /locus_tag="OQQ75_001759"
                     /pseudo
     CDS             complement(38..376)
                     /locus_tag="OQQ75_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308538.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(492..1043)
                     /gene="maa"
                     /locus_tag="OQQ75_001760"
     CDS             complement(492..1043)
                     /gene="maa"
                     /locus_tag="OQQ75_001760"
                     /EC_number="2.3.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HCS1976126.1"
                     /translation="MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHT
                     LRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML
                     APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGA
                     VVTKGVPDNVVVGGNPARIIKKL"
     gene            complement(1215..1433)
                     /gene="hha"
                     /locus_tag="OQQ75_001761"
     CDS             complement(1215..1433)
                     /gene="hha"
                     /locus_tag="OQQ75_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1976127.1"
                     /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY
                     SAADHRLAELTMNKLYDKIPSSVWKFIR"
     gene            complement(1459..1833)
                     /gene="tomB"
                     /locus_tag="OQQ75_001762"
     CDS             complement(1459..1833)
                     /gene="tomB"
                     /locus_tag="OQQ75_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hha toxicity modulator TomB"
                     /protein_id="HCS1976128.1"
                     /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNYGWVNDPTSAI
                     NLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRK
                     SGNRLFRCFVNATKENPASLSC"
     gene            complement(2379..5528)
                     /locus_tag="OQQ75_001763"
     CDS             complement(2379..5528)
                     /locus_tag="OQQ75_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS1976129.1"
                     /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT
                     ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI
                     AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA
                     NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ
                     LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD
                     IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK
                     ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS
                     AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG
                     KKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD
                     EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT
                     GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF
                     ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG
                     VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM
                     VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG
                     YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL
                     AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL
                     RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR
                     RRFSRKNEDIEHSHTVDHH"
     gene            complement(5551..6744)
                     /gene="acrA"
                     /locus_tag="OQQ75_001764"
     CDS             complement(5551..6744)
                     /gene="acrA"
                     /locus_tag="OQQ75_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrA"
                     /protein_id="HCS1976130.1"
                     /translation="MNKNRGFTPLAVVLMLSGSLALTGCDNKQAQQGGQQMPAVGVVT
                     VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ
                     ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA
                     KAAVETARINLAYTKVTAPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQ
                     SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL
                     RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET
                     RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP
                     EQSKS"
     gene            6886..7533
                     /gene="acrR"
                     /locus_tag="OQQ75_001765"
     CDS             6886..7533
                     /gene="acrR"
                     /locus_tag="OQQ75_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrR"
                     /protein_id="HCS1976131.1"
                     /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT
                     RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT
                     EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT
                     RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE"
     gene            7661..11023
                     /gene="mscK"
                     /locus_tag="OQQ75_001766"
     CDS             7661..11023
                     /gene="mscK"
                     /locus_tag="OQQ75_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HCS1976132.1"
                     /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK
                     ADLQAQLDSLNKQKDLSAQDKLELQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM
                     RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS
                     LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ
                     RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD
                     EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE
                     QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF
                     VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV
                     SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWEKAWPAVFIAFL
                     AGLPLLLIVGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI
                     ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS
                     HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES
                     WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSGRWIETVYLVIIWNLLYQ
                     TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM
                     FALFGVMFWAIWSDLITVFSYIDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA
                     WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW
                     LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT
                     DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP
                     RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF
                     NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG"
     gene            complement(11235..11396)
                     /gene="rsmS"
                     /locus_tag="OQQ75_001767"
     CDS             complement(11235..11396)
                     /gene="rsmS"
                     /locus_tag="OQQ75_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pleiotropic regulatory protein RsmS"
                     /protein_id="HCS1976133.1"
                     /translation="MSLENAPDDVKLAVDLIVLLEENQIPARTVLRALDIVKRDYEKK
                     LTRDDEAEK"
     gene            complement(11410..11937)
                     /gene="priC"
                     /locus_tag="OQQ75_001768"
     CDS             complement(11410..11937)
                     /gene="priC"
                     /locus_tag="OQQ75_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N''"
                     /protein_id="HCS1976134.1"
                     /translation="MKTALLLEKLEGQLATLRQRCAPVAQFATLSARFDRHLFQTRTT
                     TLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP
                     PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR
                     HALEKIENRLARLTR"
     gene            12007..12384
                     /locus_tag="OQQ75_001769"
     CDS             12007..12384
                     /locus_tag="OQQ75_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 family protein"
                     /protein_id="HCS1976135.1"
                     /translation="MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSP
                     RFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLL
                     VILACLLFYMWRIPVIDEKQEKH"
     gene            12537..13088
                     /gene="apt"
                     /locus_tag="OQQ75_001770"
     CDS             12537..13088
                     /gene="apt"
                     /locus_tag="OQQ75_001770"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HCS1976136.1"
                     /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS
                     IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL
                     EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD
                     LGGEQRLEKQGITSYSLVPFPGH"
     gene            13217..15088
                     /gene="dnaX"
                     /locus_tag="OQQ75_001771"
     CDS             13217..15088
                     /gene="dnaX"
                     /locus_tag="OQQ75_001771"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HCS1976137.1"
                     /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS
                     GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
                     DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ
                     KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL
                     SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI
                     EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI
                     GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ
                     PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVPSALEKAP
                     AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAARVS
                     QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSTLKGSTVEL
                     TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI"
     misc_feature    14481..14545
                     /gene="dnaX"
                     /locus_tag="OQQ75_001771"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00382"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="DnaX frameshifting element; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00382"
     gene            15141..15470
                     /locus_tag="OQQ75_001772"
     CDS             15141..15470
                     /locus_tag="OQQ75_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HCS1976138.1"
                     /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
                     PGFKMPF"
     gene            15470..16075
                     /gene="recR"
                     /locus_tag="OQQ75_001773"
     CDS             15470..16075
                     /gene="recR"
                     /locus_tag="OQQ75_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HCS1976139.1"
                     /translation="MQTSPLLTQLMEALRCLSGVGPKSAQRMAFTLLQRDRSGGMRLA
                     QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS
                     GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
                     CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF"
     gene            16185..18059
                     /gene="htpG"
                     /locus_tag="OQQ75_001774"
     CDS             16185..18059
                     /gene="htpG"
                     /locus_tag="OQQ75_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003903109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HCS1976140.1"
                     /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD
                     KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT
                     KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG
                     EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG
                     ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS
                     LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV
                     SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN
                     QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL
                     RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL
                     TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY
                     IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS
                     "
     gene            18240..18884
                     /gene="adk"
                     /locus_tag="OQQ75_001775"
     CDS             18240..18884
                     /gene="adk"
                     /locus_tag="OQQ75_001775"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007706188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HCS1976141.1"
                     /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE
                     LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN
                     VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
                     EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG"
     gene            19016..19978
                     /gene="hemH"
                     /locus_tag="OQQ75_001776"
     CDS             19016..19978
                     /gene="hemH"
                     /locus_tag="OQQ75_001776"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HCS1976142.1"
                     /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL
                     WWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPETPVALGMSY
                     GSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR
                     DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTREL
                     ASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLET
                     LEEIAEQNREVFLGAGGKKYEYIPALNATPEYIEMMANLVAAYR"
     gene            complement(19975..20934)
                     /gene="aes"
                     /locus_tag="OQQ75_001777"
     CDS             complement(19975..20934)
                     /gene="aes"
                     /locus_tag="OQQ75_001777"
                     /EC_number="3.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl esterase"
                     /protein_id="HCS1976143.1"
                     /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPSWPATGTIAEQRQYY
                     TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT
                     HDRIMRLLASYSQCTVIGIDYPLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG
                     FAGDSAGAMLALASALWLRDKQIDCGKIVGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ
                     QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLA
                     AHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL"
     gene            21086..22390
                     /gene="gsk"
                     /locus_tag="OQQ75_001778"
     CDS             21086..22390
                     /gene="gsk"
                     /locus_tag="OQQ75_001778"
                     /EC_number="2.7.1.73"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/guanosine kinase"
                     /protein_id="HCS1976144.1"
                     /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV
                     DIEAKVDDEFIERYGLSAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNY
                     SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG
                     ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK
                     YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD
                     WVDLVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL
                     RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS
                     SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR"
     gene            complement(22523..24199)
                     /locus_tag="OQQ75_001779"
     CDS             complement(22523..24199)
                     /locus_tag="OQQ75_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kef family K(+) transporter"
                     /protein_id="HCS1976145.1"
                     /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG
                     PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLL
                     GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV
                     MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS
                     AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP
                     LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTA
                     LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA
                     KTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR
                     TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD
                     IEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG"
     gene            complement(24437..>24915)
                     /gene="fsr"
                     /locus_tag="OQQ75_001780"
     CDS             complement(24437..>24915)
                     /gene="fsr"
                     /locus_tag="OQQ75_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS1976146.1"
                     /translation="YYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGR
                     KYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGM
                     VSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD"
BASE COUNT         6228 a         6493 c         6395 g         5799 t
ORIGIN      
        1 aacaaatggt agtgtccgct attgccagta cacctcacag cgcggcaggt acaaagcgcg
       61 tgttgtacca ttcgccgtta tagcaaacgc ggaaatccag cacgtcgata tcttcatagc
      121 ggtagcgtgg gtagacatcg aaaaagaaga aaccattaag caggataaat aatacaacca
      181 gtagccagac agagcctgac agcgtttcgg actgcaacat caccgccagg gtggcaaaaa
      241 aagcaacgta cataccgata aacagccccg gatgtttacg gataaaactg atactaaagc
      301 ggggtttgtt gtcgcgtttt tcgcgggtat tcagagactc aatcgtttcg gtcagcaggc
      361 gttgtatttc ggtcatcgtt tgccttcgtg gtatctgcaa ctttccaggg aacaccctat
      421 tttaacgtgg gaatagtaga ggggaagtaa cagatctacc acaattttgc ataacagttg
      481 cgaaaaaccg attacaattt tttaattatt ctggctggat taccgcccac gacaacgttg
      541 tccgggacac cttttgtgac aactgcacct gaagctacca cgacgttatc accaatggtc
      601 acaccagggt taatgaccgc gcgtccgcca atccagacgt tattaccgat ggtgacgggt
      661 ttccccagtt cagcaccgct attacgtgct acagggtcga tgggatgtgt tgccgtgtag
      721 atatgaacgc ctggtgccaa catacagtta tcaccgatgc gaatagggca gacatcaagc
      781 atcacgcaat cgaagttggc gaaaaaatta ttgccgagaa aaatgttata gccataatca
      841 cagcgaaacg ttggctcaat ataagcctct gtcacctgac cgaataaatc agcgagaatt
      901 tgctggcgta atgtgtgctc ttccgccagg gaatgattgt atcggtgaat aagctgacga
      961 gcgcgcaggc gatcgcgaga taacgtctca tctgccgagc gatacaactc accagcaatc
     1021 atcttttctt tttctgtgct cattactgac ctccggttgc tgaaaatgcg gcaacacagt
     1081 aagacgaaaa gtcagtgaac agaacgttcc cattacatct gtgtgataaa gatcacatag
     1141 ggtatgtctt catggtgaaa aagtataaaa ttcttaataa acagccggtt atagctccga
     1201 aagcgaatta tttattagcg aataaatttc catactgagg aagggatctt gtcgtatagt
     1261 ttattcatgg tcaattcggc gaggcggtga tctgcggctg agtaaaatac cgccagttca
     1321 ttatctgata attcgtattt atttttctcg ataacacgct ccagcgtgtc aattgtctgg
     1381 caacgacgta aacgcattaa ataatcggtt ttcgttaaag gtttttcgga catacttcta
     1441 cccatggttg taataattct aacaagataa actcgcagga ttctctttcg tcgcattgac
     1501 aaaacaacgg aatagtcgat tacctgactt ccgccatttc tgaagatcct gcatattaat
     1561 accataacta ctgaacaaca taaaggtgtc atccagatat tcgtcgatct gctcaatgag
     1621 cttattgtct tcattatact taattttgta attaagtgcg aaggtcgcaa tatgctcaat
     1681 cagttcattc aactggaggt tgatcgccga ggttgggtcg ttaacccagc cataattgct
     1741 ttcttcaagg tttgcaaggc agtcatgata cagggtttca cagagaaact taagctgtgc
     1801 gatatcatgt cttttgggtg agtattcatc cataacgcgt ccccttctta gcggttgaac
     1861 taacggacac ctttcgggat ggaaaaaact tactgacctg gacttgccct ctcgtttgtt
     1921 agcttaacta taagccactc tttgcaggta ttcattgcat tattacgaaa aattacaatt
     1981 aggaaggaat cgggacagga ctcacttttt catactagca ctaacccgca gcaggtaaaa
     2041 gcagtttgct cgaactgttc ataacatttc aggattatcg ccagatgaaa ttggtgacac
     2101 taataccagg attgctctga atatgacgta ataaccgagg aatgaataaa gaattaccgc
     2161 aaataattaa gaatagcctc taaatgatta tggattatta aatctattag cgctacttaa
     2221 tataaattaa ctaacaatca gtatttttta tgaattttat ccgtggttaa tactggtttt
     2281 cgtatgagat cctgagttgg tggttcaatt actccttaat gttcgtaggt tatgcataaa
     2341 aaaggccgct tgcgcggcct tagtgattac atgttgtatc aatgatgatc gacagtatgg
     2401 ctgtgctcga tatcttcatt cttgcggcta aagcggcggc gaaccaccac aaagaatacc
     2461 ggaacgaaga agattgccag taccgttgcg gtcaccatcc cgcccattac accggtacct
     2521 actgcgttct gcgcgccgga accagcacca gtactgataa ccagcggcat aacgccgagg
     2581 ataaacgcca gcgaggtcat caggatcgga cgtaaacgca tccgcactgc atcaagcgtc
     2641 gcttcaatca gacctttacc ttctttatcc atcaagtctt tggcgaattc gacgataagt
     2701 atcgcgttct tcgccgacaa cccaatggtt gtgagcaggc ctacttggaa gtaaacgtca
     2761 ttggtcaggc cacggaaggt ggcagccagc aacgcaccga taacccccag cggaacgacc
     2821 agcataacgg agaacggaat cgaccagctc tcgtacagcg ccgctagaca caggaatacg
     2881 acaatcaacg aaatcgcgta cagtgaaggt gcctggttgc cggagaggcg ttcctgatag
     2941 gacatccccg tccagtcata gccaacaccg gtaggcagtt tgctcgccag ttgttccatt
     3001 agctccattg cttcaccggt acttttaccc ggtgccgcct ggcctaagat ttccatggat
     3061 ggcaggccat tgtaacgttc cagacgcggc gaaccgtact cccaacgaga agaggagaat
     3121 gccgagaacg gcaccatctg accatcagca gcacgaacat accagtcgcc gatatcatcc
     3181 ggcagcatac ggtatttcgc ttctgacatg acgtaaactt tcttcacacg accgcggtcg
     3241 ataaagtcgt tcacatagct accgccccat gcagcgccca gagtggtgtt aatgtcgttg
     3301 atagaaacac ccagcgcctg cgctttttcc tggtcgatat caatcttaaa ctgcggggta
     3361 tcttccagac cgtttggacg tacgctggtc aacatatcag gatgctttgc tgcttctgca
     3421 agcagctggt tacgcgcctg agtcagtttt tcgtgaccaa ggccagcctg gtcaatcagc
     3481 tcaaagtcaa agccggttgc agtacccagt tccacgattg cgggcaggtt aaaggcgaaa
     3541 accatcgcat ctttgatttg cgagaaagcg cgtgttgcac gcatggtaat cgcttcaact
     3601 ttgttttctt cgcccggacg atcggcccag tccttcaagg aaacgaacgc aataccggta
     3661 ttctgaccac gtcccgcaaa gccgaagccg ttaacggcga acaccgactc aacgttgttc
     3721 ttttctttgg tcagatagta atgcgttacc tcattgagca ctttctgcgt acgttcctgc
     3781 gttgcacctg ctggcagctg aaccatggtc ataaatacgc cctggtcctc atctggcaag
     3841 aaggagcttg gcagacgcac gaacagatag gccatgccga ccacgatgat cagatacagc
     3901 accaggtaac gccccgtact gcgcagaata ccgcctacgc tgtcggtgta gtggtgcgtg
     3961 ctcttctcga acatgcggtt aaaccagccg aagaagcctt ttttaccttc cccgtgatcg
     4021 cctttggcaa tcggtttcag catggtggca caaagagccg gagtcaggat caacgctacc
     4081 agtaccgaca gcgccattgc tgaaacaatg gtaatagaga actgacgata gatagcacca
     4141 gtagaaccgc caaagaaggc catcggtacg aataccgctg acagtaccat cgcgataccg
     4201 accagagcgc cctgaatctg ccccatcgac ttacgggtag cttcttttgg cggcaaacct
     4261 tcttccgcca taacacgctc cacgttttct accacaacga tagcgtcatc caccaacaag
     4321 ccgatggcga gcaccatccc gaacattgtt agcgtgttta tcgagaagcc aaaggcggca
     4381 aggacggcaa aggtcccgag caataccacc ggtacggcaa tggtcggaat caacgtcgcg
     4441 cggaagttct gcaggaacag atacataacc aggaacacga ggatgatcgc ttcgaccagc
     4501 gttttaacca cttcgtgaat agagattttc acgaacggcg tggtgtcgta cgggtaaaca
     4561 attttcagac ccgacgggaa gaacggttcc atcttcgcca gttcagcacg gattgccgca
     4621 gcggtatcca gcgcatttgc accggtcgcc agcttgatcc ccagaccgga agccggttgg
     4681 ccgttaaact ctgcgatgat gtcgtagttc tcaccaccca gctcaatctt cgccacatca
     4741 cgcagcagga cgcgggaacc atcctgattc actttcagca ggattttgcc gaactcttca
     4801 gtagaggtca gacgcgtctg agcaataata gaggcgttaa gctgttggcc tttcaccggc
     4861 ggcgtaccac cgagctgacc cgccgcaacc tgggcgttct gcgctttgat ggcggtaatg
     4921 acatcaaccg gcgttagctg gaatttgttc agctcattcg ggttcatcca gatacgcatc
     4981 gcgtactgtg aaccgaacaa ctgaacatca cccacgcccg acgtacggct gatggcatct
     5041 ttcatattcg ccgctacgta gtcagagata tcctcctgcg tcatggtgcc atcggtgttg
     5101 ataacgccga caaccatcag gaagctgctg gatgatttct caacgctcac cccttgctgc
     5161 tgaacttctt gcggcagcaa cggcatcgcc agctgcagtt tgttctgcac ctgaacctgc
     5221 gcgatatccg catcagtacc agactcaaag gtcagggtga tctgcacggt ccccgtggag
     5281 tcactgttag aggacatgta catcaggtta tcgataccgt tcatattctg ttcgataacc
     5341 tgtgtcaccg tgtcctgcac tgttttcgca tcagcgccgg ggtaggaggc ggagatcgtt
     5401 actgccggcg gtgcaatcgt aggatattgc gccaccggca gtttgaggat cgccagcccc
     5461 cctgccaaca tgatgataat ggcgatcacc cacgcaaaaa tcgggcgatc gataaagaaa
     5521 ttaggcatgt cttaacggct cctgtttaag ttaagacttg gactgttcag gctgagcacc
     5581 gcttgcggct tgctggttat tatcagcggt aacttcttgt gcttttacct ggacaccagg
     5641 acgcactttc tgcagcccac ttattactac gcgatcgcct gctttcagac cttctgtcac
     5701 cagccactta tcgccaatag cctggcttgc aacgatcgga cgggtttcca ctttgtcatc
     5761 cgcgccaact accagtacgg tggcatcacc acgcggcgta cgggttacgc cctgttgcgg
     5821 gactaaaata gcgtttggat taagcccttc ttccagacgt gcgcgcacga acatacccgg
     5881 cagcagagtg tgatccgggt tcgggaagat agcgcgtagg gtgatagacc cagtggtctg
     5941 atcaacggta acgtcagaga attccagcgt accgtcctgc gggaacttaa tgccgtcact
     6001 ggtgatcagc gacactttgg ctttgccgtt ctcttgtttc agcgtgccat tcgccagttc
     6061 ctgtttcagg cgcaggaagt cgttgctgga ctgggtcaca tcaacgtaga tcggatcaag
     6121 ttgctgcacg gttgccagcg cagtcgcctg accgttctgt accaatgcgc cttccgtcac
     6181 gttcgactta ccaatgcgac cgctaatcgg agcggtgact ttggtgtaag ccagattgat
     6241 ccgcgcagtt tcaacggcag ctttcgccgc agttaccgca gcattcgcct gttgcgcatc
     6301 agccagagcc tgatcgtact cttgcttact gatgtactga gtaccgagca gtttctgata
     6361 acgattcacc gtcaattgcg cgatattggc tgcagcctgg gctttcgcca gatcaccttt
     6421 cgcactgtcg tatgtcgcct gataggtcgc aggatcaatc tgatagagag agacaccagc
     6481 ttcgatgtcg ctaccttctt tgaaattacg cttcaggata atcccgctaa cttgaggacg
     6541 aacttctgcg atccggtagg cactggtgcg acccggaagc tcggttgtga tctgcagagg
     6601 ttcagttttg actgttacta cgccaacggc gggcatctgc tggccacctt gttgggcctg
     6661 tttgttgtca catcctgtta gggctaagct gcctgagagc atcagaacga ccgccagagg
     6721 cgtaaaccct ctgtttttgt tcatatgtaa acctcgagtg tccgatttca aattggtcaa
     6781 tggtcaaaag ttaataaacc cattgctgcg tttatattat cgtcgtgcta tggtacatac
     6841 attcacaaat gtatgtaaat ctaacgcctg taaattcacg aacatatggc acgaaaaacc
     6901 aaacaagaag cgcaagaaac gcgccaacac atcctcgatg tggctctacg tcttttctca
     6961 cagcaggggg tatcatccac ctcgctgggt gagattgcaa aagcagctgg cgttacgcgc
     7021 ggtgcaatct actggcattt taaagacaag tcggatttgt tcagtgagat ctgggaactg
     7081 tcagaatcca atattggtga actagagctt gagtatcagg caaaattccc tggcgatcca
     7141 ctctcagtat taagagagat attaattcat gttcttgaat ccacggtgac agaagaacga
     7201 cgtcgattat tgatggagat tatattccac aaatgcgaat ttgtcggaga aatggctgtt
     7261 gtgcaacagg cacaacgtaa tctctgtctg gaaagttatg accgtataga acaaacgtta
     7321 aaacattgta ttgaagcgaa aatgttgcct gcggatttaa tgacgcgtcg ggcagcaatt
     7381 attatgcgcg gctatatttc cggcctgatg gaaaactggc tctttgcccc gcaatctttt
     7441 gatcttaaaa aagaagcccg cgattacgtc gccatcttac tggagatgta tctcctgtgc
     7501 cccacgcttc gtaatcctgc cactaacgaa taaccctgaa tctgactcca ggatttttcc
     7561 tggacatttt cgtcgttgct attctggttc actgcgtcgt gatattcttg cggtttgact
     7621 ttttcaggtc gttcttcagg ttcagaaacc ttcattcatc atgactatgt tccagtatta
     7681 caaacgatca cggcattttg ttttttcagc atttattgct tttgtttttg tcttgttatg
     7741 ccagaacacg gcgtttgcgc gggcgtcatc gaatggtgat ctgccgacaa aagcggacct
     7801 gcaggcgcaa cttgactcac taaataaaca aaaagatctt tctgctcagg acaaactgga
     7861 gctgcaggat ctgacagata cattagccac cctcgataaa atcgatcgca taaaagaaga
     7921 gacagttcag ctacggcaaa aagtcgctga agcgccggaa aaaatgcgcc aggcgaccgc
     7981 ggcgttaaca gcacttagcg atgtcgataa cgacgaagaa acgcgcaaaa ttctgagtac
     8041 gctttcgttg cgccagctgg aaactcgcgt tgcccaggcg ctggacgatt tgcaaaacgc
     8101 acaaaacgat ctggcgtctt ataacagcca gctggtttcg ttacagacgc agcccgaacg
     8161 cgtgcaaaat gcgatgtata acgcttcgca gcagctgcaa caaattcgca gtcgtctgga
     8221 tgggactgat gtcggcgaga ctgccttacg tcccagccag aaagtgttaa tgcaggctca
     8281 gcaggcgttg ctgaatgcgg agattgacca gcagcgtaaa agcctggaag ggaacaccgt
     8341 cttgcaggat accttgcaaa agcaacgtga ttacgtgacg gcgaacagcg cccgtctgga
     8401 gcaccagttg cagctgttgc aagaagcggt aaacagcaag cgcctgactt taactgaaaa
     8461 aacggcgcag gaagccgtct ccccggatga agccgcgcgt attcaggcta atccgctggt
     8521 gaaacaggaa ctggaaatta accagcagtt aagtcagcgt ctgattaccg cgactgaaaa
     8581 cggtaatcag ttgatgcagc aaaacattaa agtcaaaaac tggctggagc gggcgctgca
     8641 atcggaacgc aatattaaag agcagattgc cgtcctgaag ggcagcctgc tgttgtctcg
     8701 tatcctttac cagcaacaac aaacgctgcc ctcggcggat gaactggaaa acatgaccaa
     8761 ccgcatcgcg gatttgcgtc tcgaacagtt tgaagttaac cagcagcgtg atgcactctt
     8821 ccagagcgat gcgttcgtca acaaactgga agaaggtcac accaacgaag tcaacagcga
     8881 agttcacgat gcgttattgc aagtggttga tatgcgtcgc gaattgctgg atcaactcaa
     8941 caaacagttg ggtaaccagc tgatgatggc cattaacctg caaatcaacc agcagcagtt
     9001 aatgagcgta tcgaaaaacc tgaaatccat cctgactcag caaatctttt gggtgaacag
     9061 taaccgtcca atggactggg actggatcaa agcgttcccg caaagcctga aagatgaatt
     9121 taagtcgatg aaaatcacgg tgaactggga aaaagcctgg cctgccgttt ttatcgcttt
     9181 cctcgccggt ttgccgctgc tgttgattgt cgggctgatc cactggcgtc tgggctggct
     9241 gaaagcgtat caacaaaaac tggcttccgc tgtgggttcc ctgcgtaacg atagccagct
     9301 caacacacca aaagcgatcc ttatcgacct gatccgcgcg ctgccggtgt gcctgattat
     9361 tctcgcggtt ggcttgattc tgttgaccat gcagctcaac atcagcgaac tgctatggtc
     9421 gttcagcaaa aaactggcga ttttctggct ggtgtttggc ctgtgctgga aggtactgga
     9481 gaagaacggc gttgccgtgc gtcacttcgg catgccggaa cagcagacca gccactggcg
     9541 tcggcaaatt gtccgcatca gtctcgcatt gctgcctatc catttctggt ctgtggtggc
     9601 agaactttcc ccgctgcatc tgatggatga tgtgctgggg caagcgatga ttttcttcaa
     9661 cctgctgctg attgccttcc tggtatggcc aatgtgccgc gaaagctggc gtgataaaga
     9721 gtcgcacacc atgcgactgg tcaccattac cgtgctgtcg attatcccga ttgcattgat
     9781 ggtgctgact gccacgggtt atttctacac cacgctgcgc ctctccgggc gttggattga
     9841 aaccgtttat ctggtgatca tctggaactt gctctaccag acggtattgc gcggcttaag
     9901 cgtagcggcg cggcgtatcg cctggcgtcg tgcgctggcg cgtcggcaga atctggtgaa
     9961 agagggcgca gaaggtgccg aaccgccgga agaacccacc attgcactgg aacaggttaa
    10021 ccagcagacg ctgcgtatta ccatgttgct gatgtttgcg ctgttcggtg tcatgttctg
    10081 ggcaatttgg tccgatttga tcaccgtgtt cagctatatc gacagcatta cgctctggca
    10141 ttacaacggt actgaagctg gcgctgcggt ggtgaaaaac gtcaccatgg gcagtctgtt
    10201 gtttgcgatt atcgcctcaa tggtggcctg ggcgttgatt cgcaacctgc ctggtttgct
    10261 ggaagtgctg gtgctctcgc gactgaatat gcgccagggc gcgtcgtatg ccattactac
    10321 catccttaac tacatcatta ttgccgttgg tgcgatgacg gtgttcggat cgctgggcgt
    10381 ctcttgggat aaactccagt ggctggcggc agcattatcc gtaggtcttg gttttggttt
    10441 acaagaaatt ttcggtaact tcgtctccgg tttgatcatt ctgttcgaac gtccggtgcg
    10501 tattggcgat acggtaacca ttggtagctt ctcggggacg gtaagtaaga tccgtattcg
    10561 tgcgacaacg attaccgatt tcgatcgcaa agaagtgatc atcccgaaca aagcgtttgt
    10621 taccgagcgt ctgatcaact ggtcgttgac tgacactact acgcgtctgg tgatccgtct
    10681 cggcgtggcc tatggctccg atctggaaaa agtgcgtaaa gtgttactga aggcggcgac
    10741 tgagcaccca agggtgatgc acgaaccaat gccggaagtc ttctttacgg cgtttggtgc
    10801 cagcacgttg gatcatgagc tgcgtctgta tgtgcgtgaa ctgcgtgacc gtagtcgtac
    10861 tgtcgatgag ctgaaccgta ctatcgatca gctgtgccgt gaaaacgaca tcaacattgc
    10921 ctttaaccag cttgaagtgc atctgcacaa cgagaagggc gatgaggtga cggaagtaaa
    10981 acgcgactac aaaggcgatg acccgacgcc agcggtaggg taataaccaa agggggcgac
    11041 atttagttgc cccgagatta ctgacaaagt gcgcgttgtt catgccggat gcggcgtgac
    11101 cgccttatcc ggcctacgaa accgcaagaa ttcaatgtat tgcaggagcg gtgtaggcct
    11161 gataagcgta gcgcatcagg cagttttgcg tttgcccaca atcttagggg acatttagcg
    11221 gccccattta tttctcactt ttccgcctca tcatcgcgcg ttaatttctt ttcataatcg
    11281 cgttttacaa tatccagcgc gcgcagcacg gtgcgggctg ggatctgatt ttcttccagc
    11341 agcacaatca aatcgacagc cagtttgaca tcgtcagggg cattttccag tgacatactc
    11401 tctccattgc tagcgggtta agcgcgctag cctgttttcg attttttcca gcgcatggcg
    11461 gcagcgtgcc aggcgcgctt cataggcttc cacttcacga tgcagcgttt gctgttccac
    11521 gagatcggtc acccgcgcca ggcgggctct gcgttcggca accatctcac gtagccgccg
    11581 ctcaaaatcc tgatgctgaa tacgtttacg ctgccagcgg gcaattttcg gtggcgcact
    11641 gtcccactcg cgcaatgacc aggcggaggc ttcacgcgcg atggcttcca gttgtgccgc
    11701 cagatgttcc gccagccagg ccacttgcgg cagctgttgc tgctcaactg catgacgaag
    11761 cgcagccaga ttatcgccag cctcatcgag acaagcctgc agtgttgtcg tacgggtttg
    11821 aaaaaggtgt ctgtcaaaac gggcacttag cgtggcaaat tgcgctaccg gggcacaacg
    11881 ctgacgcagc gtagcgagct gtccttccag tttttccagc agcagggcgg ttttcacgat
    11941 aagacctcaa tgaaaatgat aattgttatg ctaaagtagc cactctgtaa gctgacaaca
    12001 ctcaatatgc aacgaatcat tttaatcatc attggctggc tggcggtagt gctgggtacg
    12061 ctgggcgtgg tattaccggt attaccgacg acgccgttta tcctgctggc ggcctggtgc
    12121 tttgcccgtt cttccccgcg ctttcacgcc tggttgctgt accgctcatg gtttggcagc
    12181 tatctacgtt tctggcagaa acatcatgcg atgccgcgcg gcgtcaaacc gcgggcgatt
    12241 ttgcttattt tgctcacgtt tgccatttct ctgtggttcg tccagatgcc atgggtgcgc
    12301 atcatgttgc tggtaattct cgcctgtttg cttttctata tgtggcgaat tccggtgatt
    12361 gatgaaaagc aagaaaagca ctgaagcaca acaatcgcag ttgcaattat tgcgtacagc
    12421 cagtacattc tggcgttttc gagcacaggc gcaggcggtc aaaggttaaa caactgttac
    12481 ttttgatacg tttaaaacgc gccgtgagta ccaccgtaac aagcaggcat acacttatga
    12541 ccgcgactgc acagcagctt gagtatctca aaaatagcat caaaagcatt caggactacc
    12601 caaaacccgg cattcttttc cgcgatgtca ccagcttact ggaagacccg aaagcttacg
    12661 ctctcagcat cgacttgctg gttgagcgtt acaaaaatgc gggcattacc aaagttgtcg
    12721 gcaccgaagc gcgtggcttc ttgtttggcg ctccggtagc tctgggtctg ggcgttggct
    12781 ttgtaccggt ccgtaaaccg ggcaaactgc cgcgtgaaac catcagtgaa acttacgacc
    12841 tggaatacgg caccgatcag ctggagatcc acgttgatgc catcaaaccg ggcgacaaag
    12901 ttctggtggt ggacgatctg ctggcaaccg gcggcactat cgaagcgacc gttaaactga
    12961 tccgtcgtct gggtggtgaa gtggctgacg ctgcgttcat tatcaacctg ttcgatctcg
    13021 gcggcgaaca gcgtctcgaa aaacagggca ttaccagcta cagccttgtc ccgttcccgg
    13081 gccattaatt atcgccagtc ttgtgctgcc cacgctacgg acagcacaag atgtgcattc
    13141 agcctcgccg ttctgacggg gctgtgttag cattacccct tcgtgaatcc accttccagc
    13201 gtttcagagc ctgccaatga gttatcaggt cttagcccga aaatggcgcc cacaaacctt
    13261 tgctgacgtc gtcggccagg aacatgtgct gaccgcactg gcgaacggct tgtcgttagg
    13321 gcgtattcat catgcttatc ttttttccgg tacccgtggc gtcggaaaaa cctctatcgc
    13381 ccgactgctg gcgaaggggc taaactgcga aaccggcatt accgcgacgc cgtgcggcgt
    13441 gtgcgataac tgtcgtgaaa tcgagcaggg gcgctttgtc gatctgattg aaatcgacgc
    13501 cgcctcgcgc accaaagttg aagatacccg cgacctgctg gataacgtcc agtacgctcc
    13561 ggcgcgtggt cgtttcaaag tttatctgat cgacgaagtg catatgctgt cgcgccacag
    13621 ctttaacgca ctgttaaaaa cccttgaaga gccgccggag cacgttaagt ttctgctggc
    13681 gacgaccgat ccacagaaat tgccggtgac gattttgtcg cgctgtttgc aatttcatct
    13741 caaggcgctg gatgtcgagc aaattcgcca tcaacttgag cacatcctca acgaagaaca
    13801 tatcgctcac gagccgcggg cgttgcaatt gctggcgcgc gccgctgaag gcagcctgcg
    13861 agatgcctta agtctgaccg accaggcgat tgccagcggt gacggccagg tttcaaccca
    13921 ggcagtcagt gcgatgctgg gtacgcttga tgacgatcag gcgctgtcgc tggttgaagc
    13981 gatggtcgag gccaacggcg agcgcgtaat ggcgctgatt aatgaagccg ctgcccgtgg
    14041 tatcgagtgg gaagcgttgc tggtggaaat gctcggcctg ttgcatcgta ttgcgatggt
    14101 acaactttcg cctgctgcac ttggcaacga catggccgcc attgagctgc ggatgcgtga
    14161 actggcgcgc accataccgc cgacggatat tcagctttac tatcagacgc tgttgattgg
    14221 tcgcaaagaa ttaccgtatg cgccggaccg ccgcatgggc gttgagatga cgctgctgcg
    14281 cgcgctggcg ttccatccac gtatgcctct gcctgagcca gaagtgccgc gccagtcctt
    14341 tgcacccgtc gcgccaacgg cagtaatgac gccaacccag gtgccgccgc aaccgcaatc
    14401 agcgccgcag caggcaccga ctgtaccgct cccggaaacc accagccagg tgctggcggc
    14461 gcgccagcag ttgcagcgcg tgcagggagc aaccaaagca aaaaagagtg aaccggcagc
    14521 cgctacccgc gcgcgtccgg tgccatcggc gctggaaaaa gcgccagcca aaaaagaagc
    14581 gtatcgctgg aaggcgacca ctccggtgat gcagcaaaaa gaagtggtcg ccacgccgaa
    14641 ggcgctgaaa aaagcgctgg aacatgaaaa aacgccggaa ctggcggcga agctagcggc
    14701 agaagccatt gagcgcgacc cgtgggcggc acgggtgagt caactttcgc taccaaaact
    14761 ggtcgaacag gtggccttaa atgcctggaa agaggagagc gacaacgcag tatgtctgca
    14821 tttgcgctcc tctcagcggc atttgaacaa ccgcggtgca cagcaaaaac tggctgaagc
    14881 gttgagcacg ttaaaaggtt caacggttga actgactatc gttgaagatg ataatcccgc
    14941 ggtgcgtacg ccgctggaat ggcgtcaggc gatatacgaa gaaaaacttg cgcaggcgcg
    15001 cgagtccatt attgcggata ataatattca gaccctgcgt cggttcttcg atgcggagct
    15061 ggatgaagaa agtatccgcc ccatttgatc gtaagcacag cttacgttcg tcatccttaa
    15121 cgtgattgag agagaaacct atgtttggta aaggcggtct gggtaacctg atgaagcaag
    15181 cccagcagat gcaagaaaaa atgcagaaaa tgcaggaaga gatcgcgcag ctggaagtca
    15241 ccggcgaatc tggcgcaggt ctggtaaaag tgaccatcaa cggtgcacac aactgccgtc
    15301 gcgtagagat cgacccgagc ctgctggaag acgacaaaga gatgctggaa gacctggtgg
    15361 ctgcagcatt caacgacgca gcacgtcgta ttgaagaaac gcagaaagaa aaaatggcct
    15421 ctgtatcctc cggaatgcag ctgccgcctg gctttaagat gccgttctga tgcaaaccag
    15481 cccgctgtta acacagctta tggaagcact gcgctgtctg tcgggcgttg gcccgaagtc
    15541 ggcgcagcgt atggcgttca cgctgcttca gcgcgatcgt agcggcggga tgcgtctggc
    15601 gcaggcgctc acccgggcga tgtcggaaat cggccactgc gccgattgcc gcactttcac
    15661 cgaacaggaa gtctgtaaca tctgttcgaa tccgcgtcgt caggaaaacg gtcaaatctg
    15721 tgtggtggag agtccggcgg acatctacgc cattgagcag acggggcagt tttctggtcg
    15781 ttattttgtg ttgatggggc atctgtcacc gctggacggc atcggtccgg atgatatcgg
    15841 gcttgatcgt ctggaacagc gtctggcaga ggaaaaaatc actgaagtga tcctcgccac
    15901 caatcccacg gttgaaggtg aagctaccgc taactacatt gccgagcttt gcgcgcaata
    15961 tgacgtggaa gctagccgaa tcgctcatgg cgtaccggtt ggcggcgaac tggaaatggt
    16021 cgatggcacc acgctgtcac actcccttgc cgggcgtcat aagattcgtt tttaagcaaa
    16081 cgagagcagg atcacctgct ctcgcttgaa attattctcc cttgtcccca tctctccctc
    16141 atcctgtttt taaccttaaa atggcattat tgaggtagac ctacatgaaa ggacaagaaa
    16201 ctcgtggttt tcagtcagaa gtgaaacagc ttctgcacct gatgatccat tctctctatt
    16261 ccaataaaga aatcttcctg cgtgagctta tctctaacgc ctccgatgcg gcggacaagc
    16321 tgcgtttccg tgcgctatct aacccggacc tgtacgaagg tgatggcgaa ctgcgcgttc
    16381 gtgtctcttt cgataaagac aagcgcacgc tgaccatctc cgataacggc gtggggatga
    16441 cccgcgacga agtgattgac catctgggga ctatcgctaa atccggtacc aaatcattcc
    16501 tcgaatccct gggttctgac caggcgaaag acagccagct gatcggtcag tttggtgttg
    16561 gtttctactc tgcgtttatc gtggccgaca aagtgactgt gcgtactcgc gcggcaggcg
    16621 aaaaaccaga aaacggcgtc ttctgggaat cggctggcga aggtgaatat accgttgccg
    16681 acatcaccaa agaagatcgt ggtactgaaa tcaccctgca tcttcgtgaa ggcgaagacg
    16741 agttcctcga tgactggcgc gtgcgttcca tcatcagcaa atactccgac catatcgcgc
    16801 tgccggtaga gatcgaaaaa cgcgaagaga aagacggcga aaccgttatc tcctgggaga
    16861 aaatcaacaa agcgcaggcg ctgtggactc gtaacaagtc ggaaatcacc gatgaagagt
    16921 acaaagagtt ctacaaacac atcgcccacg actttaatga tccgctgacc tggagccaca
    16981 accgcgttga aggtaagcag gagtacacca gcctgctgta catcccgtcc caggctccgt
    17041 gggatatgtg gaaccgtgat cataaacacg gcctgaaact gtacgtccag cgtgtgttca
    17101 tcatggacga cgcagaacag ttcatgccga actatctgcg cttcgtgcgt ggtctgattg
    17161 actccagcga tctgccgctg aacgtttccc gtgaaatcct ccaggacagc acggtaacgc
    17221 gtaacctgcg caatgcgctg accaagcgtg tgctgcaaat gctggaaaaa ctggcgaaag
    17281 acgacgcgga aaaataccag accttctggc aacagtttgg cctggtactg aaagaaggtc
    17341 cggcggaaga tttcgctaac caggaagcga tcgccaaact gctgcgtttt gcttctaccc
    17401 ataccgattc ttctgcgcag accgtatctc tggaagacta cgtttcccgc atgaaagaag
    17461 ggcaggagaa aatctactac atcaccgcag acagctatgc ggcagcgaag agcagcccgc
    17521 acctggaact gctgcgtaag aaaggcatcg aagttctgct gctttccgac cgcatcgatg
    17581 agtggatgat gaactatctg actgagttcg acggtaaacc gttccagtcg gtgtctaaag
    17641 ttgacgagtc gctggaaaaa ctggctgacg aagttgatga gagcgcgaaa gaagcggaga
    17701 aagcactgac tccgttcatc gaccgtgtga aagccttgct cggcgagcgc gtgaaagatg
    17761 tccgtctgac tcaccgtctg accgatacgc cagcgatcgt ttcgaccgac gcggacgaaa
    17821 tgagcactca gatggcgaaa ctgttcgctg cggcgggcca gaaagtgcca gaagtgaaat
    17881 acatcttcga actgaacccg gatcacgtac tggtgaaacg tgcggcagat actgaagatg
    17941 aagcgaagtt cagcgagtgg gtagaactgc tgctggatca ggcgctgctg gcagaacgcg
    18001 gcacgctgga agatccgaac ctgtttattc gtcgtatgaa ccagctgctg gtttcctgat
    18061 gtcatgccgg atgacctttg tgtcatccgg catttttctt ttcatcatca gcactttccg
    18121 caaattatct cgccattaac cgtttcagcc tcaggtgcct ttcttgaggc aatcgcctgt
    18181 tggtggtatc gtttatcgct ttttcaaaaa attcgacaca ttttaagggg attttcgcaa
    18241 tgcgtatcat tctgcttggc gctccgggcg cggggaaagg gactcaggct cagttcatca
    18301 tggagaaata tggtattccg caaatctcca ctggcgatat gctgcgtgct gcggtcaaat
    18361 ctggctccga gctgggtaaa caagcaaaag acattatgga tgctggcaaa ctggtcaccg
    18421 acgaactggt gatcgcgctg gttaaagagc gcattgctca ggaagactgc cgtaatggtt
    18481 tcctgttgga cggcttcccg cgtaccattc cgcaggcaga cgcgatgaaa gaagcgggca
    18541 tcaatgttga ttacgttctg gaattcgacg taccggacga actgattgtt gatcgtatcg
    18601 taggccgccg cgttcatgcg ccgtctggtc gtgtttatca cgttaaattc aatccgccga
    18661 aagtagaagg caaagacgac gttaccggtg aagaactgac tacccgtaaa gacgatcagg
    18721 aagaaaccgt acgtaaacgt ctggttgaat accatcagat gactgcaccg ctgatcggct
    18781 actactccaa agaagcggaa gcgggtaaca ccaaatacgc gaaagttgac ggcaccaagc
    18841 cggttgctga agttcgcgct gatctggaaa aaatcctcgg ctaatcaagc cgcagcagat
    18901 ctgctttcgg gcaggtctgc tcatccacct caggcaatac ctctcacagc aattagttct
    18961 tcttcctcac ttttccgcta caattatcaa caagttgaat cgataagagg cggtaatgcg
    19021 tcagactaaa accggtatcc tgctggcaaa cctgggtacg cccgatgccc ccacacctga
    19081 agcggtaaaa cgctatctga aacaattttt aagcgacaga cgcgtggttg atacctcacg
    19141 gttgttatgg tggccattgc tgcgcggcgt tattttgccg ctgcgctcgc cgcgtgtggc
    19201 gaagctgtat gcctctgtct ggatggaagg tggctcgccg ctgatggttt acagccgcca
    19261 gcaacagcag gcgctggcac aacgtttacc ggagacgcct gtagcgctgg gaatgagcta
    19321 cggctcgcca tcactggaaa gcgccgtcga tgaactcctg gcagagcatg tagatcatat
    19381 tgtggtgctg ccgctttatc cgcaattctc ctgttctacg gtcggtgcgg tatgggatga
    19441 actggcacgc attctggcgc gcaaacgtag cattccgggg atatcgttta ttcgtgatta
    19501 cgccgataac cacgattaca ttaatgcact ggcgaacagc gtacgcgctt cttttgccaa
    19561 acatggcgaa ccggatctgc tgctgctctc ttatcatggc attccccagc gttatgcaga
    19621 tgaaggcgat gattacccgc aacgttgccg cacaacgact cgcgaactgg cttccgcact
    19681 ggggatggca ccggaaaaag tgatgatgac ctttcagtcg cgctttggcc gggaaccctg
    19741 gctgatgcct tataccgacg aaacgctgaa aatgctcgga gaaaaaggcg taggtcatat
    19801 acaggtgatg tgcccgggct ttgctgcgga ttgtctggag acgctggaag agattgccga
    19861 gcaaaaccgt gaggtcttcc tcggtgccgg cgggaaaaaa tatgaatata ttccagcgct
    19921 taatgccacg ccagaatata tcgaaatgat ggctaatctt gttgccgcgt atcgctaaag
    19981 ctgagcggta aagaactgag cgccgtcgcg aagagcctcg tcggcggttt tcatcattcg
    20041 tgaataatgc aaaaaggcat gcagcgtacc tgggtagagt ttgaactcac agggctgctg
    20101 atgcgccgct aacgtctggt aaagcagacg gctgtcatcc agcagcggat cgaactccgc
    20161 cccggcaata aaacagggcg gaacttcgcg agtgagatca ttattaaaca gacagtaata
    20221 cggtgactcg cggtccgcgt cgttgcttaa atacgcctct tcatacatct gcaaatcctg
    20281 ttgcgttaag ccatcccaga caccgcccaa cagacgacga gtcacggaat cccgtaatcc
    20341 gtaaagccca taccacagca aaacacccac aattttaccg caatcgatct gtttatcacg
    20401 caaccacaac gcactggcga gcgccagcat ggcacctgcg gaatcaccgg caaagccaat
    20461 gcgggacata ttgatttgat aatcctccgc ctgctggtgg aaataacaac aagcagccac
    20521 aatttcctct atcgcttgcg gaaaacgcgc ttcaggtgaa agggggtaat caataccaat
    20581 caccgtacat tggctgtagc ttgccagcag gcgcatgatg cgatcgtggg tatcgagatt
    20641 gccgagaata aaaccgcctc catgcaaata aaatagcgtc gccgggctat ctggctgcgg
    20701 acaaaagaga cgtgtttcca cctgcccata ttttgttgga accatgtaag ctctggttgc
    20761 catttctgga gcgcccgcat tccagaatcg gcgctcaagc gtgtaatact gtcgttgctc
    20821 agcaatcgtt cccgttgcgg gccaggacgg taaatccggc tgaagagtat tcacaacggt
    20881 cttcatttca gcagaaataa ggtccagaac aggtagtttg ttttccggct tcatacaaaa
    20941 actcctttca aattacgtca ttgtaaggaa ccactgccat gaaaatgcga tcccgcctgc
    21001 tgatattgaa actggctgcg tctcgcgcgc tcccgtcaga ttgtgttaac attcgccgct
    21061 cagttaacca cccgtaaaaa caaccatgaa atttcccggt aaacgtaaat ccaaacatta
    21121 cttccctgta aatgcacgcg atccgctgct tcagcaattc cagccagaaa acgaaaccag
    21181 cgccgcctgg gtcgtaggta ttgaccagac gctggtcgat attgaagcga aagtggatga
    21241 tgaattcatt gagcgttatg gattaagcgc cgggcattca ctggtgattg aggatgacgt
    21301 agccgaagcg ctttatcagg agctaaaaca gaaaaacctg attacccatc agtttgcggg
    21361 tggcaccatt ggtaacacca tgcacaacta ctcggtgctc gcggacgacc gttcggtgct
    21421 gctgggcgtc atgtgcagca atattgaaat tggcagttat gcctatcgtt acctgtgtaa
    21481 cacttccagc cgtaccgatc ttaactatct acaaggcgtg gatggcccga ttggtcgttg
    21541 ctttacgctg attggcgagt ccggggaacg tacctttgct atcagtccag gccacatgaa
    21601 ccagctgcgg gctgaaagca ttccggaaga tgtgattgcc ggagcctcgg cactggttct
    21661 cacctcttat ctggtgcgtt gcaaaccggg tgaacccatg ccggaagcaa ccatgaaagc
    21721 cattgagtac gcgaagaaat ataacgtacc ggtggtgctg acgctgggca ccaagtttgt
    21781 cattgccgag aatccgcagt ggtggcagca attcctcaaa gatcacgtct ctatccttgc
    21841 gatgaacgaa gatgaagccg aagcgttgac cggagaaagc gatccgttgt tggcatctga
    21901 caaggcgcta gactgggtag atctggtgct gtgcaccgcc gggccaatcg gcttgtatat
    21961 ggcgggcttt accgaagacg aagcgaaacg taaaacccag catccgctgc tgccgggcgc
    22021 tatagcggaa ttcaaccagt atgagtttag ccgcgccatg cgccacaagg attgccagaa
    22081 tccgctgcgt gtatattcgc acattgcgcc gtacatgggc gggccggaaa aaatcatgaa
    22141 cactaatgga gcgggggatg gcgcattggc agcgttgctg catgacatta ccgccaacag
    22201 ctaccatcgt agcaacgtac caaactccag caaacataaa ttcacctggt taacttattc
    22261 atcgttagcg caggtgtgta aatatgctaa ccgtgtgagc tatcaggtac tgaaccagca
    22321 ttcacctcgt ttaacgcgcg gcttgccgga gcgtgaagac agcctggaag agtcttactg
    22381 ggatcgttaa gttatcgtcg gttcgtaggc cagataaggc gttcacgccg catctggcat
    22441 ttggctctcg atgcctgatg cgacgctggc gcgtcttatc atgcctacat atttttcata
    22501 ttttacatcc ggcaaccacc gtttaccccg tcaccacctc acccgccggt ggcgtttcca
    22561 gcagttccag catggtacgg gcgatttcac gctcgcccat cactacctga ttcgcaccac
    22621 gttcggtgat atacgccact tcatcgtcat aatgggcgcg ggcaataatc tcaatatccg
    22681 gatttttcgc gcgggcagat gccacaatct cacccgcttc ataaccgttg ggaatcgtca
    22741 ggatcagcca ttttgcacat tccagatgcg ccagttgcat aatttcttcg ttcgccgcat
    22801 tgcccaatac tgcgcggacc ccgcgctctc gcagctcatc aacacgggtt cgtgacgtct
    22861 caatcaccac cagcggaata tcagaggcga gcaatttctc ccccagcagg ctgcctacac
    22921 gaccgtaacc caccagtagc gcatggttgc aaatatccac tgggatctgc ttctcttctt
    22981 cgattgcctc ttccagcgtc tgctcttcca gcgtttcggt cttcgccaga tatttctcca
    23041 gtagtgcgaa cagtaccggg ttgagcataa tcgacaggat cgcccctgcc agtaccaggt
    23101 tttgtccggc ctgcggcagt aaattcaatg ccattcccag tcccgccagg ataaacgcga
    23161 actcaccaat ctgcgccagg ctggcggcga tggttaatgc cgtacgttgg gagtgaccaa
    23221 acagtcgcac caggaaaaat gcggctaacg acttaccaaa cagaataatc gccagcgtcg
    23281 ccagcactgc cagcggttgc tgaatcagaa ttaacggatc aaacaacatc ccgacggaga
    23341 caaaaaacag caccgcaaac gcgtcgcgca atggcagcgt atcgtgggcg gcacggtgac
    23401 tcagttcaga ctcgttcagt accatcccgg caaagaacgc accgagtgca aaggagacat
    23461 caaacagctc taccgcacca aaggcaatcc ctaacgccag cgccagcacc gacagggtaa
    23521 acagctcgcg agaaccggtt gccgcgctgc gtgccataat ccacggcacc agacggcgac
    23581 ctaccagcat cataatggcg ataaatgcga tcactttgcc gatggtgatc cccatatcga
    23641 ctgcaagagt ggcaaagccc acatcgccct gttccatcat tcctgccact gcgggcagca
    23701 acaccagcgt cagaaccatt accaggtctt ccacaatcaa ccaaccgatg gcgatttgcc
    23761 cacgctgact gtcaattaat tgccgttctt caagtgcgcg cagtaacacc acggtactgg
    23821 cggtggaaag acataaaccg aacacgatac cggtcattaa cgaccagccc agcacggcag
    23881 agagcgccat acccagcagc gtcgccacgg ctatctgggc gatcgcaccg ggaatggcga
    23941 tggcctttac cgccatcaaa tccttcagcg aaaagtgcaa accgacgcca aacatcaaca
    24001 gaatgacgcc cagttcagcc agttccggcg caagcttggt atcggcaaca aagcccggag
    24061 tgaatggtcc tgccagcaca cccgctaaca gatatcccac cagaggagaa atacgtagtt
    24121 tattggccag catgccgagg ataaaggcga gcacaaggcc gccaacaatg gtggtgataa
    24181 gcggggtggc gtgatgcatt ccgtctcctt ttcctggtgg ttattgtcca tttttggccg
    24241 ggaaaaccaa aattacaggt aatagtttat gacaatttca ttgatgatgt tcatgaataa
    24301 ttattgaatt ttgcagaaaa atggaattag ctgcaaaaaa agcacggatc ggaaaacaga
    24361 aggcggttta acagaggaaa ggcttatggc gactgtaaaa cgatgcagcc aaagtttgcc
    24421 tttggctgca atgaaatcag tctttatgcc ggttatcagg caggaatatg gtcaacatcc
    24481 ccaatagtgg caggaaagca cagattttat agactaactc gatgctggtg tgatcggcga
    24541 taagccccag aactgccgct cccagacctc ccatgccaaa agcaaaaccg aaaaagagtc
    24601 cagaaaccat accgatacgt cccggaagta gctcctgagc gtagaccaga atggcagaga
    24661 atgccgaagc gaggataaat ccaataatca ccgttaaaac ccccgtccag tgcaggctgg
    24721 cgtagggtaa aatcagcgta aacggcgcaa cgccgaggat agagccccaa atcacatatt
    24781 tccgtccaat tttatcccct acaggcccgc cgatcaccgt acctgccgca acggcaaaca
    24841 ggaaggcaaa cagatgaagc tgggcattct ggatagataa tccgaatttt tgcatcagat
    24901 aaaaggtgta atagc
//
LOCUS       DAJVUP010000048        24815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.048, whole genome shotgun sequence.
ACCESSION   DAJVUP010000048 DAJVUP010000000
VERSION     DAJVUP010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.048"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(226..3081)
                     /gene="valS"
                     /locus_tag="OQQ75_001781"
     CDS             complement(226..3081)
                     /gene="valS"
                     /locus_tag="OQQ75_001781"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000416368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HCS1976147.1"
                     /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNV
                     TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR
                     HDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL
                     YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV
                     VATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCV
                     KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQK
                     LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP
                     AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRN
                     EEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG
                     FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL
                     DMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALAST
                     GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFN
                     QTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLV
                     TVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTE
                     WLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVL
                     PADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEG
                     FVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL"
     gene            complement(3081..3524)
                     /gene="holC"
                     /locus_tag="OQQ75_001782"
     CDS             complement(3081..3524)
                     /gene="holC"
                     /locus_tag="OQQ75_001782"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004098129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HCS1976148.1"
                     /translation="MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACE
                     DEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTS
                     FADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK"
     gene            complement(3684..5195)
                     /gene="pepA"
                     /locus_tag="OQQ75_001783"
     CDS             complement(3684..5195)
                     /gene="pepA"
                     /locus_tag="OQQ75_001783"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HCS1976149.1"
                     /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS
                     ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND
                     TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN
                     VPTRRELTSGERAILHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV
                     ITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDS
                     GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP
                     GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI
                     TGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA
                     GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE"
     gene            5462..6562
                     /gene="lptF"
                     /locus_tag="OQQ75_001784"
     CDS             5462..6562
                     /gene="lptF"
                     /locus_tag="OQQ75_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HCS1976150.1"
                     /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP
                     ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA
                     MILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
                     IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAL
                     LRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTV
                     FMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV
                     NLIYLALAIVLNLWDTVPVRRLRASFSRKGAV"
     gene            6562..7644
                     /gene="lptG"
                     /locus_tag="OQQ75_001785"
     CDS             6562..7644
                     /gene="lptG"
                     /locus_tag="OQQ75_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313266.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HCS1976151.1"
                     /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ
                     GSYDALGAGMYTLLSVPKDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV
                     ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF
                     VYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPK
                     QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW
                     SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG
                     IPPIIGALLPSASFFLISLWLLMRKS"
     gene            complement(7805..9307)
                     /locus_tag="OQQ75_001786"
     CDS             complement(7805..9307)
                     /locus_tag="OQQ75_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HCS1976152.1"
                     /translation="MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLA
                     ESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFG
                     EKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQY
                     IGDNAKSFQNQYGNISSASVGAIQRGLLSLEKQGAAHFFGEPMLDIKDWMRTDTNGKG
                     VINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAP
                     QVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAV
                     KAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTE
                     DERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASTKQQNNPPAKGKAVAVDDGILG
                     GLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR"
     gene            complement(9437..10456)
                     /gene="ahr"
                     /locus_tag="OQQ75_001787"
     CDS             complement(9437..10456)
                     /gene="ahr"
                     /locus_tag="OQQ75_001787"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent aldehyde reductase Ahr"
                     /protein_id="HCS1976153.1"
                     /translation="MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSD
                     LSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDAC
                     ISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKP
                     LLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVN
                     SRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLI
                     AGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVV
                     LKADF"
     gene            10652..10736
                     /locus_tag="OQQ75_001788"
     tRNA            10652..10736
                     /locus_tag="OQQ75_001788"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10686..10688,aa:Leu,seq:caa)
     gene            10900..12165
                     /locus_tag="OQQ75_001789"
                     /pseudo
     CDS             10900..12165
                     /locus_tag="OQQ75_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522431.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
     gene            complement(12220..13230)
                     /locus_tag="OQQ75_001790"
     CDS             complement(12220..13230)
                     /locus_tag="OQQ75_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976154.1"
                     /translation="MIYITSESKETLMIKYEGKMKKNIRVIPKNIHSKLRRLGNTVVA
                     GTSIAFTENQLKSGALEHLGIYFDNGVNAYETSVIPDPLQGKYSLKNVFGEEIVRKDL
                     PKETHYTEIESPNWGDSSNGTHTVRLPYEKYPRDIIPPTLIAIEINHKQPSDSHFIFN
                     FRVTRILDKQSNKFDDELLFDLNLLQENLGKCGIEDADKPISTYADTLIVSWEIFPPG
                     SKEETLARIFRGKNITSDKKNVAENRYDFFMSLEPKKIVTGNSTFSNYIGAMLEDDLV
                     VFENIEYGNAIYILYDNWDDISKLSRIDLLSGRAGSNFDRIIHSGNWKDEVRKKVAAG
                     RL"
     gene            complement(13181..13717)
                     /locus_tag="OQQ75_001791"
     CDS             complement(13181..13717)
                     /locus_tag="OQQ75_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976155.1"
                     /translation="MLKAIAGIAKYTWIYMAIFIISLMIISSSDINYVYNDFANYCTL
                     LVSVSGMVFTIMGIWLAFLYPNALQRIVNPKTIETVDFTEQLEDTRRLEAIVGSVLKS
                     SFVMITLLVVYLVKLVFFKSHLYLESQDVIKNTSLALIIAISYMQIEAVISVILANVM
                     FINDLHNKREQRDIDDQV"
     gene            complement(13718..14797)
                     /locus_tag="OQQ75_001792"
     CDS             complement(13718..14797)
                     /locus_tag="OQQ75_001792"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976156.1"
                     /translation="MNVGHLNFFKVNKCGLYKVNDDNTYGLELSETFDLIQDWVGTKS
                     LALTIPWDPKEKPNSSKCYCKDIYKDENTGDFLVMLWKSDTDSTGSLLGASEDGEIGS
                     SSVVKYTNSYRGKKVIWGRPCFYWVIPELETIVSIKFDHSVCDSELFQDYVHSSITNR
                     VKHSKRVKNKTEKGYIRLSNTDDEDLYKYMYRFDMKLRSLETTHTELGKLIPKITHIV
                     RRETIIINPNDARADWLKTFSTLVPFVSGKKNAKTRQIEIKAEAKPSLNEVQEIIEKY
                     SAEDREKRLWDNVGFATDKGITWVDKYRMRDILNVPSDDYSTYSAAYIYEQISHKRKE
                     FISPILKELKALQSQPRIKKASGED"
     gene            complement(15195..15767)
                     /locus_tag="OQQ75_001793"
     CDS             complement(15195..15767)
                     /locus_tag="OQQ75_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Polarity suppression protein"
                     /protein_id="HCS1976157.1"
                     /translation="MESTALQQVFDTCQNNKAAWLQRKNELAAAEQEYLRLLSGEGRN
                     VSRLDELRNIIEVRKWQVNQAAGRYIRSHEAVQHISIRDRLNDFMQQHGTALAAALAP
                     ELMGYSELTAIARNCAIQRATDALREALLSWLAKGEKINYSAQDSDILTTIGFRPDAT
                     SVDDSREKFTPAQNMIFSRKSAQLASRQSV"
     gene            complement(15841..16341)
                     /locus_tag="OQQ75_001794"
     CDS             complement(15841..16341)
                     /locus_tag="OQQ75_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1976158.1"
                     /translation="MIYCPSCGHVAHTRRAHFMDDGTKIMIAQCRNIYCSATFEASES
                     FFSDCKDSGMEYISGKQRYRDSLTSASGSMKRPKRMLVTGYCCRRCKGLALSRTSRRL
                     SQEVTERFYVCTDPGCGLVFKTLQTINRFIVRPVTPDELAESLHEKQELPPVRLKTQS
                     YSLRLE"
     gene            complement(16338..17072)
                     /locus_tag="OQQ75_001795"
     CDS             complement(16338..17072)
                     /locus_tag="OQQ75_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001600374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein 3"
                     /protein_id="HCS1976159.1"
                     /translation="MSDNTIPEYLQPALAQLEKARAAHLENARLMDETVTAIERAEQE
                     KNALAQADGNDADDWRTAFRAAGGVLSDELKQRHIERVARRELVQEYDNLAVVLNFER
                     ERLKGACDSTATAYRKAHHHLLSLYAEHELEHALNETCEALVRAMHLSILVQENPLAN
                     TTGHQGYVAPEKAVMQQVKSSLEQKIKQMQISLTGEPVLRLTGLSAATLPHMDYEVAG
                     TPAQRKVWQDKIDQQGAELKARGLLS"
     gene            17624..17890
                     /locus_tag="OQQ75_001796"
     CDS             17624..17890
                     /locus_tag="OQQ75_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015979398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS1976160.1"
                     /translation="MQAVFSSPSPAPVTPLMPLPDITQERFLRLPEVMHLCGLSRSTI
                     YELIRKGEFPPQVSLGGKNVAWLHSEVTAWMAGRIAGRKRGYDA"
     gene            17887..18486
                     /locus_tag="OQQ75_001797"
     CDS             17887..18486
                     /locus_tag="OQQ75_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000980235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS1976161.1"
                     /translation="MMMPALQKLPFSGLPFSGICGYSFSAAAKSAAGRENPSNSQATY
                     DAPRVFFCVAINATERQIMVWCVVSRADGIPCILPASAHYAAESMVAQAGQPPGWPVS
                     CEAGILTPVWAIAIERENSGDSVICYSQEAAIMATTLTPSHPEFVFVFAAVRRADRHP
                     RICMLRTVAGDERSARRSLVRDYVLSLAARLPVVEVSRA"
     gene            18479..18766
                     /locus_tag="OQQ75_001798"
     CDS             18479..18766
                     /locus_tag="OQQ75_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001244665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Derepression protein"
                     /protein_id="HCS1976162.1"
                     /translation="MRNKKAPQTVSARHDAREHLSIEAYHKLNRASAVSQFVGGDLIH
                     RELSGLHQLYIPHIFSYLNEDIDFVLNELKAKGLCRDFLAQQKDRGDRTHV"
     gene            18759..19214
                     /locus_tag="OQQ75_001799"
     CDS             18759..19214
                     /locus_tag="OQQ75_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016569899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976163.1"
                     /translation="MFDFPQPGEIYRSAGFPDVAVVGILEDGIPWEMPYRCPDIVWNP
                     YRRKFSILVRILADGRTTDIPLGRFLREFTCDRPDLFKRSPVNRHAVLKEMAGDPELQ
                     KWREKYLDIYPQDTVPVSRAAPVAREWREIPRTEPDPEITPDNSYRNYL"
     gene            19350..19670
                     /locus_tag="OQQ75_001800"
     CDS             19350..19670
                     /locus_tag="OQQ75_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5375 domain-containing protein"
                     /protein_id="HCS1976164.1"
                     /translation="MKTPLPPVLRAALYRRAVACAWLTVCERQHRYPHLTLESLEAAI
                     AAELEGFYLRQHGEEKGRQIACALLEDLMESGPLKAAPSLSFLGLVVMDELCARHIKA
                     PVLH"
     gene            19685..22018
                     /locus_tag="OQQ75_001801"
     CDS             19685..22018
                     /locus_tag="OQQ75_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000783678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HCS1976165.1"
                     /translation="MKMNVTATVSHALGHWPRILPALGIQVLKNHHQPCPVCGGSDRF
                     RFDDREGRGTWYCNQCGAGDGLKLVEKVFGVSPSDVAAKVAAVTGSLPPADPAVTAAA
                     VAETDAARKNAAALAQTLMAKTRPGTGNAYLTRKGFPGRECRMLTGTHRAGGVSWRAG
                     DLVVPLYDDSGELVNLQLISADGRKRTLKGGQVRGTCHTLEGQNQAGKRLWIAEGYAT
                     ALTVHHLTGETVMVALSSVNLLSLASLARQKHPACQIVLAADRDLSGDGQKKAAAAAD
                     ACEGVVALPPVFGDWNDAFTQYGGEVTRKAIYDAIRPPAESPFDTMSEAEFSAMSTSE
                     KAMRIYEHYGEALAVDANGQLLSRYENGVWKVLPPLDFARDVAGLFQRLRAPFSSGKV
                     ASVVDTLKLIIPQQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVE
                     GETLETHAPAFWRWLDRAAGGRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKS
                     IMAEIATLLAGEDNATSATIETLESPRERAALTGFSLIRLPDQEKWSGDGAGLKAITG
                     GDAVSVDPKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERD
                     PQLKDKITRELAVIVRHLMQKFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIGYL
                     ETLPQTSGMYMGNASIIPRNYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPVMLKEY
                     GLNYEKRHTKQGIQTNLTLKEESYGDWLPKCDDPATT"
     gene            22365..22559
                     /locus_tag="OQQ75_001802"
     CDS             22365..22559
                     /locus_tag="OQQ75_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001365036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1976166.1"
                     /translation="MWIKDALVWIRATDPNLLIKNYLTFRFIDGLKIDWSEKQWGHKR
                     GHISLLCFIICFLSLTYFDI"
     gene            22777..24045
                     /locus_tag="OQQ75_001803"
     CDS             22777..24045
                     /locus_tag="OQQ75_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1976167.1"
                     /translation="MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRF
                     GGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKV
                     AREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLE
                     VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKID
                     EYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRG
                     AKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENTVNSALRVMGYD
                     TKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLM
                     LQWWADFLDANREKGITPFDYAKINRGNGE"
     gene            24436..>24815
                     /locus_tag="OQQ75_001804"
     CDS             24436..>24815
                     /locus_tag="OQQ75_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001009620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976168.1"
                     /translation="MNFKKKLEEHFKQFEASPVLFVGSGVSRRYLGVPCWQDLLKHFA
                     EAIGENHIKLKTKSNGDLPEYAQLLVSAYAEKWWDTEEGQLALSEKEQEKTFINEQSP
                     LKLSISKYIENAHKNIIDNDELKH"
BASE COUNT         5921 a         6425 c         6148 g         6321 t
ORIGIN      
        1 atctgatgga aatggaagcc acgcaagcac cttaaaatca ccatcataca ctaaatcagt
       61 aagttggcag cattaccgac cttcctttaa tcaataaaga agaacaacca gataaaggct
      121 tcttagccag tatttcacgg ggaattatgc cttctttacc atttctgtaa gagataaaaa
      181 aggccggagc atgctccggc cttcgttttc atcactgtgt tttgattaca gcgcggcgat
      241 aacagcctgc tgttcaatca gcttcgcttt cgcttctgca tagccttcca gcttctcacg
      301 ctctttcgcg atgaccgctt ccggtgcgcg ggcgacaaag ccttcattcg ccagcttgtt
      361 ctcgatacgg ctgatttcgc cttcgatctt cgccacttct ttcgccagac gcgccagctc
      421 atcttctttg ttgatgaggc cagccatcgg gatcagcagc tctgcgccgt cgatgatctt
      481 cgtaacggaa accggacctt tgtcatcggc aggcagcacg gtgatgcttt ccagacgcgc
      541 cagggtttgc aggaagccac ggttttcatt tacgcgacgt tctgcatccg cgctgcaacc
      601 acgcagcagc agctccagcg gtttgcccgg cgcgatgttc atttctgcac ggatgttacg
      661 taccgcaacg atcgcctgtt tcagccactc ggtgtcagcc agtgcggctt catcaacctg
      721 agatgcatcg tactgcggga acggctgcag catgatggtg tcggcagtga taccgcaaag
      781 tactttcaca cgctgccaga tggtttcggt gatgaacgga atgatcggat gcgcgaggcg
      841 cagcagacct tccagtacag tcaccagcgt atggcgagta ccgcgcagtt cggcttcggt
      901 tccaccgttc attaccggct tagtcagctc cagataccag tcgcagaact ggttccaggt
      961 gaactcatac agaatgcctg cagcgatatc gaagcggaag ctgtccagcg cttcgcggta
     1021 cgctttgatg gtctggttga actctgccag aatccagcgg tccgccagcg acagcgtcat
     1081 ttcaccaccg ttgaagccgc aatcctgacc ttccgtgttc atcagcacaa agcggctggc
     1141 gttccacagc ttgttacaga agttacggta gccttccagg cgtttcatat cccagttgat
     1201 gtcacgaccg gtagaagcca gcgccgccag ggtgaagcgc agggcatcgg tgccgtgcgg
     1261 ctcaatgccg ttcgggaact gtttctcggt gcgcttacgg attttgtccg ccagctgcgg
     1321 ctgcatcata ttgccggtac gtttctccag cagttccggc agcgaaatac cgtcaaccat
     1381 atccagcggg tcaataacgt tacccttgga tttggacatc ttctggcctt cgtcgtcacg
     1441 aatcaggccg gtcatgtaaa cggtgtggaa cggcacctgc ggtttgccat tttcatcttt
     1501 gatgaagtgc atggtcatca tgatcatgcg ggcaatccag aagaaaatga tgtcgaaacc
     1561 agataccatc acgctggttg ggtggaactg gcgcagtgcg tcggtgtttt ccggccagcc
     1621 tagggtagag aaggtccaca gcgcagaaga gaaccaggtg tcgagaacgt cttcgtcctg
     1681 acgcagggca acgtcggcac cgaggttatt ttccttgcgc acttcttctt cgttgcggcc
     1741 aacataaacg ttacctgctt cgtcgtacca tgcagggata cggtgacccc accacagctg
     1801 acgagagata caccagtcct gaatatcgcg catccaggag aagtacatgt tttcgtactg
     1861 cttcggtacg aactgaatgt cgccgttctc aaccgcctca accgccggtt tcgccagtac
     1921 atcggcacgc acgtaccact ggtcggtgag catcggttcg ataactacgc cgccacggtc
     1981 gccgtaaggc acggtcaggt cgtgcggttt aatttcttcc agcaggccga gcgcgtcaac
     2041 cgcagcaacg actgctttac gtgcagcaaa acgctccagt ttctggaact ctgccgggat
     2101 ttcgctggaa taaacgtcag attcgttacc tttggtatcg aacacctggg cgctttcacg
     2161 gatatcgccg tcaaaggtca ggatgttgat catcggcagc gcgtgacgtt tacccacttc
     2221 atagtcgtta aagtcgtgcg ccggagtgat tttcacgcag ccggtgcctt tttccatgtc
     2281 ggcgtgttcg tcgccaacga tcggaatacg acggttaacc agcggtagaa tgacatattt
     2341 gccaatcagg tctttgtaac gcggatcttc cgggttaacg gccacgccgg tatcgcccaa
     2401 cagggtttcc ggacgggtag tcgcaaccac cagataatct ttaccgtctg cggttttcgc
     2461 gccgtcagcc agcggatagc ggatgtgcca catcgaacct ttcgattcgc ggttttccac
     2521 ttccaggtca gagatagcgg tgcgcagttt cggatcccag tttaccaggc gtttgccacg
     2581 gtaaatcagg tcttctttat acagacgaac gaaaacttct ttcaccgcat tggacaggcc
     2641 ttcgtccatc gtgaagcgtt cacgctccca gtcgacggag ttgccaagac ggcgcatctg
     2701 acgggtaatc gtgccgccgg attccgcttt ccattcccaa attttgtcga tgaaagcttc
     2761 gcggccgtag tcgtgacggg ttttaccttc ttctgcggca atcttgcgct caacgaccat
     2821 ctgggtagcg atcccggcgt ggtcagtacc gacctgccac agggtgtttt tgccctgcat
     2881 gcgctgatag cggatcatgg tatccatgat ggtttgctgg aaggcgtgac ccatatgcaa
     2941 actgccggtg acgttcggcg gcgggatcat gatgcagaaa ctttcctggc tttcatcgcc
     3001 attaggctta aagtagccct gcttttccca gtgctcgtaa agcggctgtt cgatatcttg
     3061 tgggttatat gtcttttcca ttatttccag gttgccgtat tcaggttgaa accagccacg
     3121 cggtaggctt tatagcgttc gcgcgccagt tgtttcagag aatcttcata aggaacgaag
     3181 tctaccactt ctgtgaaagc ggtggcaaaa tctgcaaagc ttgttcgcag actaatcaat
     3241 atatcgcgcg ggctgctgct gcgtttttgc ggccaggcga tctccaccgg cgcaccgccg
     3301 cgcggtcctt ctcccgctaa attatgcgga acaaagcttt ctgccggacg cgcccacagg
     3361 gcttcatcca gccggtaagc ctgcttttca tcttcacagg cgatgagcac gcgcttaccg
     3421 ctgcgccaac gttctgcggc aatttcacac accagttgct caacggcgct taagccatcg
     3481 acggtggtgt cattgtccag aaggtagaac gtcgcgtttt tcatatatgg ggcttcttgt
     3541 ggtggattta aatacgcatc aggtatacac cgcagcgcct gatgcgacgc tgttgtgtct
     3601 tatcaggcct acgagttcag tgctgtgtag gtcggataag gcgttcacgc cgcatccggc
     3661 aataacagcc ttgcctgacg caattactct tcgccgttaa acccagcgcg gtttaacagg
     3721 aactgtgcca gcaacgccac cggacgaccg gtggcgcctt ttgctttacc agaacgccag
     3781 gcggttccgg cgatatctag gtgcgcccag ttgtacttac gggtaaagcg cgacaggaag
     3841 caacctgcgg taatcgcccc accaggacga ccgccaatgt tcgccatatc ggcaaaattg
     3901 gactccagct gttcctgata ctcgtcaccc agcggtaagc gccatgcgcg gtcaccggat
     3961 tgttcagacg cggcaatcag ttcatgggcc agcggattat ggttcgccat cagaccggta
     4021 atgtgatgac ccagcgcgat cacgcaggca ccggtcagcg tcgccacgtc aatcaccgct
     4081 tccggctcaa aacgctcaac gtaagttaac acgtcgcaca gtaccaggcg gccttcagcg
     4141 tcggtattca gcacttcaac agtttgaccg gacatggtgg ttaacacatc gcccggacga
     4201 taggctcgtc cgccaggcat gttttcgcag cctgccaaca cgccgataac gttaatcggc
     4261 agttgtagct ccgcgaccat ccgcatcacg ccgtaaaccg ctgccgcacc gcacatatcg
     4321 tacttcatct catccatgcc ttctgaaggc ttgatcgaga taccgccgga gtcgaaggtt
     4381 aaacctttac ccaccagcac gattgggcgt gcatcttccg acgcgttgcc tttgtactca
     4441 atcaccgaca tcagcgattc gttttgcgaa ccctgaccga ccgccagata ggaatgcatc
     4501 cccagctctt tcatctgctg ttcgccgata acgcgggtga tgacattctt gctgtagctg
     4561 tcagccagct ggcgcgcttg tgaagcgagg taagcggcgt tacagatatt cggcggcata
     4621 ttgccgagat cttttgctgc tttaatcccg gcggcaatcg ccagaccgtg caggatcgcg
     4681 cgctcaccgc tggtcagttc acggcgggtc ggcacgttga acaccatttt acgcagcgga
     4741 cgacgcggtt cgctcttgtt cgttttcagc tgatcgaaac tgtagagcgt ctcttttgcc
     4801 gtctcgacag cctgacgcac tttccagtag ttgttacggc ctttaacgtg cagttcagtc
     4861 agaaagcaga ccgcttccat tgagccagta tcattcagcg tattaatggt tttctgaata
     4921 acctgcttgt actgacgctc atccagctca cgttctttgc cgcaaccaat aaggagaatt
     4981 cgctcggaaa gtacattcgg aacatggtgc agcaacaatg tctgccccgg ttttccttcc
     5041 agttcgcccc gacgtagcag ggcgctgatg tacccatcgc tgattttatc gagctgttct
     5101 gcaatcggag aaaggcgacg tggttcgaag acgcccacga cgatgcaggc actccgctgt
     5161 ttctccgggc taccgctttt tacactaaac tccatgcact acgctcctga atcttaaaga
     5221 caacggcggt ggctacagat agaattgcaa gctttcgtaa ctcatgtccg ctgttgcgat
     5281 gacttcgtgt taatcttaac gttattacgg cattggcacg tcagaacaaa atctgagagg
     5341 tgaatccgtt gagtataatt atcttagcga cgatttcgac gactcaagag aataaatgac
     5401 gtttaagcca tgaaacaagc taaaatcctg caaaagacga gtttttacgg gcgtatttaa
     5461 agtgataatc ataagatatc tggtgcggga gacgctcaaa agccagctgg cgatactctt
     5521 catcttgctt ttgatcttct tctgtcaaaa gttagtgagg atcctcggcg cagcggttga
     5581 cggcgatatt ccggcgaatc tggtgctctc ccttctcggg ttgggcgtgc cggaaatggc
     5641 gcagcttatc ctgccattaa gcctgttcct cgggctgctg atgacgctgg gcaaactgta
     5701 taccgaaagt gaaattacgg taatgcatgc ctgcggcctg agcaaagcgg ttctggtgaa
     5761 agcggcaatg atccttgcgg tattcactgc aatcgtcgcg gcggttaacg tgatgtgggc
     5821 gggaccgtgg tcatcgcgtc atcaggatga agtgttagca gaagcgaaag cgaaccctgg
     5881 catggcggcg ctggcgcaag ggcaattcca gcaagcgact aatggcagct cggtgctgtt
     5941 catcgaaagc gttgacggca gcgatttcaa agatgtgttc ctcgcgcaaa ttcgaccaaa
     6001 aggtaatgca cgtccttctg tggtggtggc cgattccgga catttaaccc agctgcgcga
     6061 cggctcccag gtcgtcactc tcaaccaggg aacgcgcttc gaaggcactg cactgttacg
     6121 tgatttccgc attacggact tccaggatta tcaggcgatc attggtcacc aggcggtagc
     6181 gctcgacccg aacgataccg accagatgga catgcgtaca ttgtggaaca ctgacaccga
     6241 tcgtgcccgc gcagaactga actggcgtat cacgttggta ttcaccgtgt ttatgatggc
     6301 acttatggtc gtaccgctga gcgtggttaa cccgcgtcag ggacgcgtac tatcgatgct
     6361 gccagccatg ctgctgtatc tacttttctt cctgatccag acctccctga aatcgaacgg
     6421 cggtaaaggt aagctggacc cgacgctgtg gatgtggacc gttaacctga tttatctggc
     6481 tttggcgatt gttctcaacc tttgggacac cgtgccggtc cgccgcctgc gcgccagttt
     6541 ttcgcgtaaa ggagcggtgt gatgcaacct tttggcgtac ttgaccgcta tatcggtaaa
     6601 actattttca ccaccatcat gatgacgctg ttcatgctgg tgtcgctgtc gggcattatc
     6661 aaatttgtcg atcagctgaa aaaagccggg caggggagtt acgacgcgtt aggcgcagga
     6721 atgtatacct tgctgagcgt gccgaaagat gtgcaaacat tcttcccgat ggcggctctg
     6781 cttggggcgt tgcttggtct tgggatgctg gcgcagcgca gcgaactggt ggtgatgcag
     6841 gcttctggtt tcacccgtat gcaggttgcg ctgtcggtga tgaaaaccgc cattccgctg
     6901 gtcttgctga cgatggcgat tggtgaatgg gtcgcgccgc agggcgagca gatggcgcgt
     6961 aactaccgtg cgcaggcgat gtacggcggc tcgttgctct ctacccagca aggcttatgg
     7021 gcgaaagatg gcaacaactt cgtttacatt gagcgggtta aaggtgacga agagttaggt
     7081 ggcatcagta tttatgcctt taacgagaat cgtcgtctgc aatccgtacg ctatgccgct
     7141 actgcgaagt ttgacccgga acataaagtc tggcgtctgt cgcaggttga tgaatctgat
     7201 ctgaccaatc cgaaacagat caccggttcg cagacggtga gcggcacctg gaaaaccaac
     7261 ctcacgccgg acaaactggg cgtggtggcg ctggacccgg atgcactctc aatcagcggt
     7321 ttgcacaact acgtgaagta tctgaagtcg agcggtcagg atgccggacg ttatcagctc
     7381 aatatgtgga gcaaaatctt ccagccgcta tccgtggcgg tgatgatgct gatggcgctg
     7441 tcgttcatct ttggcccact gcgtagcgta ccgatgggcg tgcgtgtggt caccggtatc
     7501 agcttcggtt ttgtcttcta cgtactggac cagatcttcg gcccgctgac gttggtttat
     7561 ggcatcccgc cgatcatcgg cgcactgttg ccaagcgcca gcttcttctt aatcagcctg
     7621 tggctgttaa tgagaaaatc gtaaccgaat gaacgaataa agggagcgaa agctcccttt
     7681 attattgtta gcaaagtgtg cttcgttcat gcctgaaaaa tcatgaaaat ccaatatatt
     7741 gcagtggtgt aggcatgata agacgcgcca gcgtcgcatc aggcaaagac aaatctcgcc
     7801 tgacttacct tcttcttccc cccagcaaac tccccaacat cccacgtaca atctgattcg
     7861 tcacctggcg ggcggcgctt ttcgccattg tttgcaccac accatctttc ttcccgccgc
     7921 gtggtccggt agtgccaaac aaaatatcct tcaatccacc aagaataccg tcatccaccg
     7981 ccaccgcttt ccctttcgcg ggaggattat tttgctgctt ggtactggcc tgaaagcctt
     8041 tttgcaacat ctcataggcg gattcccggt ccacgtcatc ctcgtacttg ccatacaccg
     8101 gggagtggtt aatcaagcca ttgcgctcat cttccgtcac cggtcccatc cgcgaacaag
     8161 gcgcaatcac catcgcccgt tccaccacag aaggacttcc ttttgcatcg agaaacgaga
     8221 ttaacgcctc gccggtcccc agttcctgga ttgccttttc ggtatcaaac gccggattgg
     8281 cccgcatggt ttgcgccgca gcttttaccg ctttctgatc tttgggcgta aaagcccgca
     8341 aagcgtgttg aacgcgatta ccgagctgcc cgagcacatt atccggaata tcagacgggt
     8401 tttgcgaaac gaaccagacg cccacgcctt ttgagcgaat aagccttatt acctgctcaa
     8461 tcttatccag cagtacctgc ggtgcatcgt taaacagcag atgtgcctcg tcgaagaaaa
     8521 acaccagttt tggtttctcc agatcgcccg cttccggcaa ttgttcatac aactctgaaa
     8581 gcatccacag caggctggcg gcgtacagtt tcggcatctg ataaagcttc tcggcgctga
     8641 ggatattgat aacgccttta ccgttggtat cggtgcgcat ccagtctttg atatccagca
     8701 tcggctcgcc aaagaaatgc gccgcacctt gcttttccag cgacagtaaa ccgcgctgga
     8761 tggcaccaac cgatgcgcta ctgatattac cgtactgatt ctggaaagat ttggcgttat
     8821 cgccgatgta ctgggtaatc gcccgcagat ctttaaagtc gagcagcaac aatccctgat
     8881 cgtcagcaat acggaagatg atattcagca cgccagattg cacatcgttg agattcaaca
     8941 gccgcgccag caacagcggc cccaggtctg aaaccgtcgc ccgcaccgga tggcctttct
     9001 cgccaaagat atcccacacc accaccggat tagcatgcgg ttgccagtca ttgacgccga
     9061 tatttttaag ccttgtgagc agtttttccg acgccgttcc tgcctgcgcg ataccggtca
     9121 gatcgccttt cacatcagcc ataaacaccg gcacgccgat ttccgacaat gactctgcca
     9181 gtttttgcag cgtaacggtt ttacccgtcc ccgttgcgcc agtaatcagc ccgtgacggt
     9241 tagccattcc cggcagtaaa aaaagttctg tgtccggcgt gcgggcaatt aataggggtt
     9301 cgctcatgag atttcctcca gtttcctgcc tggagtatag gcaacggctg cgcactcttc
     9361 accgctaaat tcagcagatt gcgagacgcc ttccaaagag atttaagtgc cgggcgacag
     9421 gcacccggca aagggatcag aagtcggctt tcagaaccac gcggtaacgc gccttaccgt
     9481 cgcgcacatg cttgatggca tcgttaattt tcgacatcgg gaacagttcg gtggtcggcg
     9541 caaccttgct acgggcggca aagcgcatca gctttcgcag ctcataaggc gtgccggtag
     9601 cagaaccaga gatgctgcgg tcgcccgcaa ttaacgtaaa ggccggaaca gacagcggcg
     9661 tgagaaccgc accgaccgta tggaaattac cgccataggt cagcgcctca aaataaggct
     9721 gccagtcgag gctgacgttc acagtattga taatgagatc aaactgcccc gacagggctt
     9781 tcagtgcctg cggatcgcgg ctattcacca ctttatcggc acccatcgcc agtacttcct
     9841 gctctttcgc cggattagaa ctaaaggccg tcacctcgca tcccattgcg tgcagaagtt
     9901 ttatagcgat atgccccagc ccgccaatac caattacccc aacgcggctg gtagcagtga
     9961 tatggtgcat caacagtggt ttaaagaccg tgataccgcc gcacaacagc ggcccggcgg
    10021 actcgatatc aatattttct ggcagtggaa tcacccattg ccagtccgca cgcaacttct
    10081 cggcaaagcc accgcgattc ataatcgtcg gcaccgcacc ttgctcgcag ttgatctgat
    10141 taccgctaat acaggcgtcg cagtgaccac agctacgcgc cgtccagcca atcccgacac
    10201 gctgaccgac ctgcaaacct ttatcctgcg cggcgctccc gagtgccacc acgcgcccaa
    10261 tcacctcatg cccggcaacc agcggatatt gtgaaaatcc ccattcattg tcgatcatcg
    10321 atagatcgga atggcagatc ccgcaataat ccacctgcac ttcaacatct tgtggcctca
    10381 gctcaccggg atcgtactca taaacttcca gttcgccgcc cgcttctttt gcggcatagc
    10441 tttttatcat cgacattttt tggtccttct ctggtgttgt ttgggaagtg tagagcatgg
    10501 cagggcgggg tgcctggagt gtgacaaagg ttacacatcg ctgtgtgcaa tgctgaaaat
    10561 ttcagcactt agcgaggtgc gagcaagctg gcgcttgcat ggtggcgtgc gacaggtata
    10621 atccacaacg ttttccgcat acctcttcag tgccgaagtg gcgaaatcgg tagacgcagt
    10681 tgattcaaaa tcaaccgtag aaatacgtgc cggttcgagt ccggccttcg gcaccattct
    10741 tacttccaag accatccgag aaagtccaaa tatcccttta aaatcaatgc ttgcagcgat
    10801 tttttcgtcc tgcgtcttcc gaggttgtcc gttgaaatcc ggatatcatt gggggcataa
    10861 ttgggggcat cttaacttcg attagaaatg tgcccccaaa tgaagctcaa cgccagacag
    10921 gtcgagaccg caaagccaaa agacaaaacc tacaaaatgg ccgatggtgg tggtttgtat
    10981 cttgaggttt cggccaaagg ttccaaatac tggcgcatga aatacagacg tccctctgac
    11041 aaaaaagagg atcgtctcgc gtttggtgtt tggcctactg tgacgcttgc tcaggcaaga
    11101 gcaaagcgcg atcaagctaa aaagctgtta gcgcagggca ttgatccaaa agccgaatag
    11161 aaagaagctc aggccgagaa ttcgggggca tattctttcg aaactatcgc tcgtgaatgg
    11221 catgctagta ataagcgctg gagtgaagat caccgatcac gcgttctacg ttatcttgag
    11281 ctttatatct ttcctcatat tggttcatct gacatccgtc agctcaaaac tagccaccta
    11341 ttagccccga ttaaaaaagt tgatgccagt ggtaagcatg acgttgcaca gcgccttcag
    11401 cagcgtgtca cggctattat gcgttatgca gtacagaacg attacatcga ctcaaatcca
    11461 gccagtgata tggccggtgc gctatcgaca accaaagcgc gacattaccc cgctttgccc
    11521 tccagccggt tccctgagtt tcttgctcgt cttgctgcat atcgtggccg tgtaatgacg
    11581 cggatcgcgg ttgagctttc cttactaact tttgtgcgtt ccagtgagtt acgtttcgcg
    11641 cgttgggatg agttcgactt cgataaatct ctctggcgag tacctgcaaa acgagaagaa
    11701 attaaaggtg tgcgttactc gtaccgtggc atgaagatga aagaggagca tatcgttcag
    11761 cttagtcggc aggcgatgat tttgctaaac cagttaaagc agattagtgg agataaagag
    11821 ctgctttttc cgggtgatca tgacgcaact aaggttatga gcgaaaacac ggtaaatagc
    11881 gcattgcgtg cgatgggcta tgacacgaaa accgaagttt gcgggcacgg gtttagaacg
    11941 atggcccgtg gtgcgttggg cgagtccgga ttatggagtg aagatgctat agaacgacag
    12001 ttgagccatt cagagcgtaa taatgtacgt gctgcttata ttcacacctc tgaacatttg
    12061 gatgaacgtc gattgatggt tcaatggtgg gctgattatc tccaagcaaa taagggcaaa
    12121 acaataacac cttatgattt tgctaaaata aacaaaagtc gatagtgaaa ataaacgcct
    12181 ataatatata ggcgtttatt tctgtattaa acactttgat cataatcttc cagcagcaac
    12241 tttttttcgt acttcatctt tccaattgcc actatggatt attctatcga aattacttcc
    12301 tgctcttcct gataataagt caattcgaga tagcttgctg atatcatccc agttatcata
    12361 gaggatatat atagcattac catattctat gttttcaaat acaaccaaat cgtcctccag
    12421 catagctcca atataattac tgaacgtgct gtttcctgtg acgatttttt taggttcaag
    12481 actcatgaag aagtcatatc tattttcagc gacatttttc ttgtcggaag tgatattttt
    12541 acctctaaaa attcttgcta aagtttcttc tttactacct ggtggaaata tttcccatga
    12601 gactataagt gtatcagcat aagtcgatat gggtttatca gcatcctcaa ttccacattt
    12661 accaagattt tcttgaagaa gatttaaatc aaataataat tcatcatcaa acttatttga
    12721 ttgtttgtct aaaattctag ttactctgaa gttaaatatg aaatggctgt ccgagggctg
    12781 tttgtgatta atttcaatgg ctatgagtgt tggtggtata atgtctctgg gatatttctc
    12841 gtaaggtaat ctaacagtat gtgtaccatt agagctatca ccccagttag gtgactcaat
    12901 ttcagtgtaa tgagtttctt ttgggaggtc ttttctgaca atttcttcac caaaaacatt
    12961 tttaagtgaa tatttaccct gcaatggatc tggtatgacc gacgtctcat aagcattaac
    13021 accattatca aaatatattc caaggtgctc taatgctcca ctttttaatt ggttttccgt
    13081 aaatgcaata gaagtgccag caacaactgt attaccaagc cttcttaact tgctatgaat
    13141 atttttaggt ataacacgta tattcttttt catttttccc tcatacttga tcatcaatgt
    13201 ctctttgctc tcgcttgtta tgtaaatcat tgataaacat aacatttgca agtattacgc
    13261 taattactgc ctcaatctgc atgtacgaaa tagcaataat taatgctaaa gatgtgtttt
    13321 ttattacatc ttggctctct aaataaagat gacttttgaa aaacactagt ttaactaagt
    13381 atacaacaag taaagtaatc ataacgaaag atgattttag aacacttcca actattgctt
    13441 ctaatcttct tgtatcttcc agttgttcgg tgaaatcaac ggtttctata gttttggggt
    13501 tcacaatacg ctgcaaagca tttgggtaaa gaaacgctaa ccaaattccc ataatagtaa
    13561 aaaccattcc agaaactgat acgagaagag tgcaatagtt ggcaaaatcg ttatacacat
    13621 agttaatatc ggatgacgaa ataatcatca gcgatataat gaatatcgcc atgtatatcc
    13681 atgtgtattt ggctatgcct gctatagctt tcaatattca atcctctcca gatgctttct
    13741 ttattcttgg ttgagattgt aatgctttta attcttttaa tataggggaa ataaattctt
    13801 ttcttttgtg tgatatttgt tcgtaaatat atgcggcgga atatgttgaa tagtcgtcag
    13861 aagggacatt gagaatatca cgcattctat atttatccac ccaagttata cccttgtctg
    13921 tagcaaatcc aacattgtcc caaagacgtt tttctctatc ctcagccgaa tacttttcaa
    13981 tgatttcttg aacttcattc aaggatggtt ttgcttctgc ttttatttca atttgtcttg
    14041 ttttggcatt tttctttccg gacacaaatg gaacgagagt gctaaaggtc tttaaccaat
    14101 cagctcgtgc atcatttgga tttataataa tagtttccct gcgaactatg tgtgttattt
    14161 ttggtattag tttacctaac tcagtatgag tggtttctaa gcttctgagc ttcatatcaa
    14221 acctgtacat atatttatat aagtcttcgt catcggtatt agatagcctt atataacctt
    14281 tctcggtttt atttttaacc cttttgctat gtttaactct attagtaata gatgagtgta
    14341 catagtcttg aaatagttca gaatcacaaa cagaatggtc gaatttaatg gatactatag
    14401 tttcaagttc aggtataacc caataaaagc atggccgccc ccagataact tttttccctc
    14461 tgtagctatt agtatattta accaccgatg agcttccgat ttcaccgtct tcactagctc
    14521 ctaataaaga gcccgtacta tcagtatcag atttccataa catgactaag aaatcaccag
    14581 tattttcatc cttataaata tccttgcaat aacactttga actgtttggt ttttcttttg
    14641 gatcccatgg tatcgtgagt gcaagagatt tagttcccac ccaatcctgt atgaggtcaa
    14701 atgtttcgct aagttctaaa ccataggtat tgtcatcatt taccttgtat aaaccgcact
    14761 tattaacctt gaagaaattg agatgcccta cattcatgct ctttccttag cttcttatct
    14821 tgggatatgt atcatgttca aaaattaagc ataaccccat tgacttcgtg cgggcaatgt
    14881 tttcacccta gaatttgatc ggtttaacgt taaatattca taagttacat gagcattttt
    14941 cacttcttcc caattacaga cgtcatgagc tgaatattaa taaaataatt atcctcacgg
    15001 catggcgcgc aatgctctcc ccgccacgcc cgcccgcttt gcagggcggt tttaatgcag
    15061 ttgcacagtc acgctcaggc tgcgccggga atggcgcggt ctgcagaaaa tgaggcagga
    15121 aaacgcatgc aaagccatgc accttatcga tgcatggctt ttttcagtaa aaacgggcgg
    15181 attttcgggg aattttacac agactgacgt gatgccagtt gcgcactttt acgcgaaaaa
    15241 atcatgttct gcgcaggggt gaatttttca cggctgtcat ccaccgaagt cgcgtcaggc
    15301 ctgaatccga tggtcgttaa aatgtcacta tcctgtgcgg aataattaat tttttccccc
    15361 ttcgcaagcc aggacagaag ggcttcacgc agggcatctg tggcacgctg tatggcacag
    15421 tttcgggcaa tggccgtcag ctcactgtag cccatcagct ccggtgccag tgccgccgcc
    15481 agtgctgtgc cgtgctgctg cataaaatca ttcagccggt cgcggatgct gatgtgctga
    15541 acggcttcat gcgaacgaat ataacgaccg gcagcctgat tcacctgcca ttttctgact
    15601 tcgataatat tgcgtaattc gtccaggcga ctgacgtttc tgccttcccc ggacagaagc
    15661 cgcagatatt cctgttcggc cgcagccagc tcatttttgc gttgcagcca tgctgctttg
    15721 ttattctgac aggtgtcaaa gacctgctgt aaggctgtgc tttccatcgt tatctctttc
    15781 tcatcatgct gaagaataaa aatacggtgt gcggcgacgg ccggtgttaa ccggcagccc
    15841 tcattccaga cgcagcgaat atgattgtgt ttttaagcgt actggcggca gttcctgttt
    15901 ttcatgcagg ctttctgcca gttcgtccgg cgtgaccggg cggacaataa aacggttgat
    15961 ggtctgaagc gttttaaaca ccagaccaca gcccggatcc gtgcacacat aaaaacgctc
    16021 ggtgacttcc tgagacagac gccgcgatgt tcttgacagt gcaaggcctt tacatctccg
    16081 acaacaatat ccggtaacaa gcattctttt cgggcgtttc atactgccgg aggctgacgt
    16141 cagtgaatcg cggtatctct gtttgcctga aatgtattcc attcctgaat ctttacagtc
    16201 agagaaaaag ctttcactcg cttcaaatgt cgcagagcaa taaatattcc ggcactgtgc
    16261 aatcattatc ttggtgccat cgtccatgaa atgtgcgcga cgggtgtgag caacatgtcc
    16321 acacgacggg cagtaaatca tgacagcagt cctctggcct taagctctgc tccctgctgg
    16381 tctattttgt cctgccacac cttgcgctgt gccggtgtgc ctgccacctc ataatccatg
    16441 tgcgggagtg ttgccgctga cagtccggtc agccggagaa ccggctcgcc ggtgaggctg
    16501 atttgcatct gtttaatttt ctgttccagc gatgatttca cctgctgcat gacagccttt
    16561 tccggtgcga cgtagccctg atggccggtg gtgttggcga gcggattttc ctgtaccagg
    16621 atactcagat gcattgcccg gacaagcgcc tcacaggttt cattcagggc gtgttccagc
    16681 tcatgctctg catacagact cagcaggtga tgatgtgcct tccggtaggc ggtggccgtg
    16741 ctgtcacacg cccctttcag gcgttcacgt tcaaaattca gcaccacggc cagattgtca
    16801 tattcctgta ccagctcccg gcgtgccacg cgctcaatgt ggcgctgttt cagctcgtcg
    16861 ctcaggacac caccggctgc acgaaaggcc gtgcgccagt cgtcagcgtc atttccgtcg
    16921 gcctgcgcca gcgcattttt ttcctgctct gcccgttcaa tggccgtgac ggtctcatcc
    16981 atcaggcggg cgttctcaag gtgggcggct ctggcctttt ccagttgtgc cagtgcgggt
    17041 tgcagatatt cagggatggt gttgtcagac attttccggc tcctcgtcac ttcaggttaa
    17101 gaaaattgtg acgtacaccg gacaacaaca cgacgcattg cagatgtgcc agccctgaca
    17161 caggagactc atcctcagac cggcaagcca ggaaaaggtc gcaggaaaaa ccggcttact
    17221 gtttgttttt ttatatttta ctgttcacct ctgttcacca taagaaaaaa gataagtaat
    17281 acagtaagtt aaagggtgaa caatcgcagt aatgactgtt caccgtctgt tcaccactgt
    17341 tcacccgctc atagactttt tgtgctgttt attacttttt atttttatta atccactgaa
    17401 ataaataaga aaaaacaatt tgtatttcac tataattttt tccagctcct tccagagcgt
    17461 tttaaagcca tctggcgctg atgtataaaa aatacacagc cattgtaaga ctgccggaac
    17521 aaatcccccc tgttgcatct gccaaaaata ttcacaaaat aaagcgctac ccgaagccgg
    17581 acggacttat ccggtgctgt atggacatta acgaggtagc ccgatgcaag ctgttttttc
    17641 ttccccgtct cccgcccctg tgacgccact gatgccgctg ccggacatca cgcaggagcg
    17701 ttttttacgt ctgccggaag tgatgcacct gtgcggcctg tcacgctcga ccatctatga
    17761 actcatccgt aagggggaat ttccgccgca ggtgagtctt ggcggtaaaa atgtggcctg
    17821 gctgcactct gaagtcaccg catggatggc cggacgcatt gccggacgca aacgggggta
    17881 cgacgcatga tgatgcccgc tctgcaaaaa ctcccttttt ctggcttgcc tttttccggc
    17941 atttgcggat atagtttttc cgctgccgca aaatcggcag ccgggcgtga gaacccgagc
    18001 aattcacagg cgacatatga cgcgccacgc gtcttttttt gtgtcgcaat caatgccaca
    18061 gagcgccaga ttatggtgtg gtgtgtggtc agtcgtgcag atggcattcc gtgcatcctg
    18121 cccgcgtccg ctcattatgc cgcagagtca atggtagctc aggcggggca gcctccgggc
    18181 tggccggtat cctgtgaagc cggtattctc acccccgtct gggctatcgc catcgagcgt
    18241 gagaactccg gcgatagcgt tatttgctat tcacaggagg ctgccatcat ggctacaacc
    18301 cttaccccct cacaccctga atttgtcttt gtgtttgcgg ctgtccgtcg cgcagaccgt
    18361 catccccgta tctgtatgct tcgcaccgtg gccggtgatg aacgcagtgc ccgccgttcc
    18421 cttgtccgtg actatgtgct ctcccttgct gcccgtctgc cggtggtgga ggtgtcccgt
    18481 gcgtaataaa aaagcccctc agaccgtctc agcacgtcat gacgcccgtg aacacctcag
    18541 cattgaggct taccataagc tcaaccgcgc cagcgccgta tcccagtttg ttgggggtga
    18601 tttgattcac cgtgaactct ccggcctgca tcagctctac attccgcata ttttcagcta
    18661 cctgaatgaa gatattgatt ttgtgctgaa tgagctgaaa gccaaaggcc tgtgccgcga
    18721 ttttctcgcc cagcagaaag accggggaga caggacgcat gtttgatttt ccccagcccg
    18781 gtgagattta ccgttctgcc ggttttcccg atgtggccgt ggtcggcatt ctggaagacg
    18841 gtattccgtg ggaaatgccg taccgctgcc cggacattgt ctggaacccg taccgccgta
    18901 aattcagtat ccttgtgcgt atcctcgccg acgggcgcac cacagacatc ccgctggggc
    18961 gttttctgcg ggaatttacc tgtgaccgtc ctgacctgtt taaacgcagc cccgtaaacc
    19021 ggcatgcggt actgaaagaa atggccggag acccggaatt acagaaatgg cgggagaaat
    19081 atctggatat ttacccgcag gacactgttc cggtcagccg ggcagcaccg gtagcgcggg
    19141 aatggcggga aattccccgc acggagcctg acccggaaat caccccggat aacagttacc
    19201 gcaattatct gtaattaaaa aacgacaccc gaaaaattaa atgtgcgtat tcgcgcaggg
    19261 atacgcacgt cttcaggaga cgcagatatg ccttatcagt taatgcaacc ggcacggaat
    19321 gcagtcatct gtcacaggga ggaaagcaaa tgaaaacacc cttaccgccc gtcttacgcg
    19381 cagcccttta ccgtcgtgct gtcgcctgtg cctggctgac cgtgtgcgaa cgtcagcacc
    19441 gctacccgca tctcaccctt gagtcactgg aggcggccat cgccgctgag ctggaaggct
    19501 tttatctgcg ccagcacggt gaggaaaaag ggcgtcagat agcctgtgcc ctgctggaag
    19561 atttaatgga atccggcccc ctgaaggccg caccgtcgct gtcctttctc gggctggttg
    19621 tgatggatga actctgtgcc cgtcacataa aagcgccggt actgcactga aggagaacaa
    19681 caccatgaaa atgaacgtaa ccgccaccgt cagccatgcg ctcggccact ggccgcgtat
    19741 tctcccggcg ctggggattc aggtgctgaa gaaccatcat cagccctgtc cggtctgtgg
    19801 cgggagtgac cgcttccgtt ttgatgacag ggaggggcgc ggcacctggt actgcaatca
    19861 gtgtggtgcc ggtgacggcc tgaaactggt tgaaaaggtg tttggtgtct ccccgtccga
    19921 cgtggccgca aaggtggctg ccgtgaccgg cagtctgccc ccggctgacc cggcagtgac
    19981 ggccgccgcc gttgctgaaa cagacgctgc ccggaagaac gccgccgcac tggcacaaac
    20041 cctgatggca aaaacccgtc ccggaaccgg taacgcctac ctgacccgca agggctttcc
    20101 cggccgggaa tgccggatgc tgaccggcac acacagagcc ggtggcgtga gctggcgcgc
    20161 cggtgacctt gtggtgccac tgtatgacga cagcggcgaa ctggttaacc ttcaattaat
    20221 cagtgctgac ggccgtaagc gcaccctgaa aggcggacag gtcaggggca cctgtcacac
    20281 ccttgaagga cagaatcagg ccggaaaacg tctgtggata gcggagggat acgcgaccgc
    20341 acttaccgta catcacctga ccggtgaaac ggtgatggtg gcgctttctt ccgtgaacct
    20401 cctttctctg gccagccttg cccggcagaa gcatccggcc tgtcagattg tccttgccgc
    20461 agaccgtgac ctcagcggtg acggccagaa aaaagccgcc gcagccgcag atgcgtgtga
    20521 aggtgttgtt gccctgccgc cggtcttcgg tgactggaat gatgccttca cgcagtacgg
    20581 cggggaggtc acccgtaagg ccatttacga tgccatccgg ccaccggctg aaagcccgtt
    20641 cgacaccatg agcgaagcag agttttccgc catgagtacc agcgaaaagg ccatgcgtat
    20701 ctatgagcat tacggcgagg cgctcgcggt cgatgccaac ggccagcttc tgtcccgcta
    20761 tgaaaatggt gtctggaagg tgctgccgcc actggacttt gcccgggatg tggccgggct
    20821 gtttcagcgt ctgcgcgcgc cgttctcctc cgggaaggtg gcctccgtgg tggacaccct
    20881 gaagctgatt attccgcagc aggaagcccc ctcccgccgc ctgattggct ttcgtaacgg
    20941 tgtgctcgac acacagaacg gcacgttcca cccgcacagt ccgtcacact ggatgcgtac
    21001 cctgtgcgat gtggatttca ccccaccggt ggaaggggaa acgctggaaa cccacgcccc
    21061 cgcgttctgg cgctggcttg accgtgccgc cggtggccgt gcggaaaaac gcgacgtgat
    21121 tctggccgca ctgtttatgg tgctggcaaa ccgctacgac tggcagctct ttctggaggt
    21181 gaccggtccc ggcggcagcg gcaaaagtat catggccgaa atcgccaccc tgctggccgg
    21241 ggaggataac gccacgtcgg ccaccattga gacgctggaa tccccgcgtg aacgtgccgc
    21301 gttaactggc ttctcactga tacgcctgcc ggaccaggaa aaatggagcg gcgacggtgc
    21361 cggactcaag gccatcaccg gcggcgatgc ggtgtccgtg gacccgaaat accgggatgc
    21421 gtactccacg catatcccgg cggtgattct ggccgtgaac aataacccga tgcgcttcac
    21481 cgaccgcagc ggcggcgtgt cacgccggcg ggtgattatt cacttcccgg aacagatagc
    21541 cccgcaggag cgcgacccgc agcttaagga caaaatcacc cgcgagctgg cggtcatcgt
    21601 gcgtcacctg atgcagaagt tcagcgaccc gatgctcgcc cggtcactgc ttcagtccca
    21661 gcagaactca gacgaggcgc tgaacatcaa acgggatgcc gacccgacgt ttgattttat
    21721 cggctatctg gaaaccctgc cgcagaccag cggcatgtat atggggaacg ccagtatcat
    21781 cccgcgtaat taccgtaaat acctctatca cgcctatctg gcctacatgg aggcaaacgg
    21841 ctaccggaat gtactcagtc tgaaaatgtt cgggctgggg ctgccggtga tgctgaagga
    21901 atacggactg aattacgaga agcgccatac caaacagggg atacagacca acctgacact
    21961 gaaagaggaa agctacggcg actggctgcc aaaatgtgac gaccctgcaa caacctgacc
    22021 cacctgaccg gcatctgccg gtcttttttt atcccgacct cccccgaagg tgaacaatcc
    22081 actgttcacc cttcaccgta tattcacccg ttatcacact gaaattaaaa gagaaaaatg
    22141 aaaggtgaac agtgtgaaca atcaaatcaa aaaaaacttt tttctccctg tgcgattttc
    22201 agtacggggg attaatcacc ggtatgagtc acaccggcag aatgccggag gtgaagaatc
    22261 gaatgttcac ccttcaccca ttattcacca cctatcactc tgaaataaaa ggagaaaatt
    22321 aaatggtgaa cagtgtgaac agttctttcg aaaaaaaatt ttttatgtgg ataaaagatg
    22381 cactggtttg gatccgggct acggatccaa acttactgat taaaaattat ttaactttcc
    22441 gatttattga tgggctgaaa atagattggt cagaaaaaca gtgggggcac aaaagggggc
    22501 atatttcatt gttgtgtttt attatttgtt ttttatcatt aacttatttt gatatttgag
    22561 tccggccttc gcaccaaaag tatgtaaata gacctcaact gaggtctttt tttatgcctg
    22621 aaatccgcgc tacacaaggc ttttccagct tttcccctca actgaagtca acctgactca
    22681 acccacatca acaggcttgt gagtatacta atgagtatat ttgccgattc gatattgctt
    22741 gtatactcac gagataccaa tggaaggaag accattatgg ccctaacgga tactaaagtt
    22801 cgctctgcga aacctgagga gaaagagtat tcacttgttg acggcgacgg catgtcctta
    22861 cttgtaaaac ctggcggttc aaagtattgg cgatttcgtt tccgttttgg cggtaaacaa
    22921 catttgatgg cgttcggcgt ttacccggat gtttcgctgg cggatgcgcg gaagaaaagg
    22981 gaagaggcca gaaagctggt agctgctggt atcgatcctc gtgagcataa gcgtgctgtg
    23041 aaagaagagc aggcgaaaga gattattact ttcgagaagg ttgccagaga gtggctcgta
    23101 accaaccaaa aatggtcgga agagcatgct aatcgtgtaa aaaagagcct ggaggacaat
    23161 atcttcccgg caattggttc ccacaatatt gctgaactgg gcacccgcga tctgttaatt
    23221 cctattaaag ccgtggagaa atccggacgt cttgaagtgg cttcccgcct tcaacagcgc
    23281 accacggcca tcatgcgtta tgcagtgcaa agcgggttaa ttgattacaa tccggcgcaa
    23341 gagatggcgg gggcggtagc ttccagtaat cgacagcatc gtccggcgct ggagttaaag
    23401 cgtatcccgg aattactcca gaaaatcgat gaatacaccg gcaggccact aacccgctgg
    23461 gcaaccgaac ttaccctgct tatttttatt cgatccagtg agctgcgttt tgctcgctgg
    23521 tcagaaatcg attttgaaac gtcaatgtgg accatcccgc ctgagcgaga acctattccc
    23581 ggtgtgaaac attctcagcg aggagcaaag atgcgtacac ctcatctggt gccgctttca
    23641 aagcaggcgc tagcgatcct gaagcagata aaacagttct gtggcgaaca tgagctgatt
    23701 tttattggcg atcacgatcc gagtaagccc atgagtgaaa acacggtgaa cagtgcattg
    23761 cgggtgatgg gctatgacac caaggttgag gtttgcggcc acggcttccg cactatggcc
    23821 tgtagctcat tgattgagtc agggttatgg tcgaaggatg cggtggaaag gcagatgagc
    23881 catatggaac gcaattcggt gagggcggcg tatatccata aagcggaaca tctggatgag
    23941 cgcaagctga tgttgcagtg gtgggctgat tttctggatg cgaaccggga gaaggggatt
    24001 acgccgtttg actatgcgaa gatcaatcgg ggtaatggcg agtgagttat ctaaaagcgc
    24061 acattcgcct ctaaattgaa agctgctgac ttattcaaac gaggaattgg tcagcagtgc
    24121 caaatagccg agttttcact aaggtaagcc tttttattga acctaatcgg cagtaatgct
    24181 ccacctaagc ctaaatttaa agtcatgatt acttataaaa ggggagtgga cccttgattg
    24241 agccctacat cgtaacaaag gtacagcaat tcggctacat caggagtgat agtcaattag
    24301 ttaatctaat aattaattga atctaaataa ttaaatttct tacgtaaaat tgaccaattt
    24361 actggtggtg taagccgcaa tatcttaatg taatcagtat aaaggggctt gatttctttt
    24421 aaagatagta tccgtatgaa ttttaagaaa aaactcgaag agcattttaa gcagttcgaa
    24481 gcatccccag tgttatttgt cggctccggt gtgtctcgtc gttatcttgg tgtgccatgt
    24541 tggcaagacc ttttgaagca ttttgctgag gcaattgggg aaaatcatat aaaattaaaa
    24601 acaaaatcta atggtgactt acccgaatat gcacaattat tggtgtctgc atatgctgag
    24661 aaatggtggg atactgaaga aggacaatta gcattaagtg aaaaagaaca ggagaaaact
    24721 ttcattaacg aacagtctcc tttgaagttg tcaatatcta aatatattga gaatgcacat
    24781 aaaaatatta tagataatga tgagttaaaa catga
//
LOCUS       DAJVUP010000049        24675 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.049, whole genome shotgun sequence.
ACCESSION   DAJVUP010000049 DAJVUP010000000
VERSION     DAJVUP010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24675
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.049"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..273)
                     /locus_tag="OQQ75_001805"
     CDS             complement(<1..273)
                     /locus_tag="OQQ75_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HCS1976169.1"
                     /translation="MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYF
                     TDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGS"
     gene            complement(532..1413)
                     /gene="yddG"
                     /locus_tag="OQQ75_001806"
     CDS             complement(532..1413)
                     /gene="yddG"
                     /locus_tag="OQQ75_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415990.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid efflux DMT transporter YddG"
                     /protein_id="HCS1976170.1"
                     /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS
                     GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATRHQAIEAGMVNYLW
                     PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYF
                     LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTQQPEMVFSTPVMIK
                     LISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGA
                     LMVCGGSLLCWLATRRG"
     gene            1645..4692
                     /gene="fdnG"
                     /locus_tag="OQQ75_001807"
     CDS             1645..4692
                     /gene="fdnG"
                     /locus_tag="OQQ75_001807"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:2230..2232,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS1976171.1"
                     /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK
                     EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV
                     NSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS
                     TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIAVDPRFTRTASVADIYAPIR
                     SGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD
                     KSSWNYQFDENGYAKRDETLTHPRCVWNLLKAHVSRYTPDVVENICGTPKADFLKVCE
                     VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLAGQVNYWSNYPKFFVSL
                     MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK
                     NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG
                     SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQAEGGKGVEPLMKMSWNY
                     KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT
                     GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI
                     QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP
                     LGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA
                     QPEQFVEISETLAAAKGINNGERVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI
                     PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA"
     gene            4705..5589
                     /gene="fdnH"
                     /locus_tag="OQQ75_001808"
     CDS             4705..5589
                     /gene="fdnH"
                     /locus_tag="OQQ75_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase N subunit beta"
                     /protein_id="HCS1976172.1"
                     /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA
                     CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH
                     CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC
                     TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEG
                     VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY
                     IGIGPNKEVDDDEEDHHE"
     gene            5582..6235
                     /gene="fdnI"
                     /locus_tag="OQQ75_001809"
     CDS             5582..6235
                     /gene="fdnI"
                     /locus_tag="OQQ75_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit gamma"
                     /protein_id="HCS1976173.1"
                     /translation="MSKSKMIVRTKFIDRVCHWTVVICFFLVALSGISFFFPTLQWLT
                     QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK
                     VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI
                     ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI"
     gene            complement(6286..6570)
                     /locus_tag="OQQ75_001810"
     CDS             complement(6286..6570)
                     /locus_tag="OQQ75_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS1976174.1"
                     /translation="MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTG
                     KAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ"
     gene            complement(6716..7726)
                     /gene="adhP"
                     /locus_tag="OQQ75_001811"
                     /pseudo
     CDS             complement(6716..7726)
                     /gene="adhP"
                     /locus_tag="OQQ75_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415995.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
     gene            complement(7860..9557)
                     /gene="maeA"
                     /locus_tag="OQQ75_001812"
     CDS             complement(7860..9557)
                     /gene="maeA"
                     /locus_tag="OQQ75_001812"
                     /EC_number="1.1.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS1976175.1"
                     /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG
                     LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV
                     IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG
                     LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI
                     IDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA
                     VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQREGLSEEAARQKVFM
                     VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ
                     TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV
                     WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLV
                     LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI"
     gene            complement(9714..9851)
                     /gene="sra"
                     /locus_tag="OQQ75_001813"
     CDS             complement(9714..9851)
                     /gene="sra"
                     /locus_tag="OQQ75_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary-phase-induced ribosome-associated
                     protein"
                     /protein_id="HCS1976176.1"
                     /translation="MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAE
                     K"
     gene            complement(9953..10168)
                     /gene="bdm"
                     /locus_tag="OQQ75_001814"
     CDS             complement(9953..10168)
                     /gene="bdm"
                     /locus_tag="OQQ75_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310112.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-dependent modulation protein"
                     /protein_id="HCS1976177.1"
                     /translation="MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWV
                     EASDNDILSDIYQQTINYVVSGQHPTL"
     gene            10514..10945
                     /gene="osmC"
                     /locus_tag="OQQ75_001815"
     CDS             10514..10945
                     /gene="osmC"
                     /locus_tag="OQQ75_001815"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin OsmC"
                     /protein_id="HCS1976178.1"
                     /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK
                     GTNPEELIGAAHAACFSMALSFMLGEAGFTPTSIDTIADVSLDKVDAGFAITKIALKS
                     EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS"
     gene            complement(11001..11927)
                     /locus_tag="OQQ75_001816"
     CDS             complement(11001..11927)
                     /locus_tag="OQQ75_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1976179.1"
                     /translation="MSDTLLTLRGVHINFPARKNWLGKTTEHVHAINGIDLQIRRGET
                     LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI
                     ITEPLWIAKRSSEQQRRALVEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ
                     PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL
                     GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFF
                     YERCPLATSGCEVRQSLAIREDGRELRCWRAL"
     gene            complement(11920..12906)
                     /locus_tag="OQQ75_001817"
     CDS             complement(11920..12906)
                     /locus_tag="OQQ75_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1976180.1"
                     /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES
                     GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGDDVLNAREKQLRQWRGARVAMIFQEPM
                     TALNPTRRIGLQMMDVIRHHQPISRREARAKAIVLLEEMQIPDAVEVMSRYPFELSGG
                     MRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKAGASGTAVLFISHDMA
                     VVSQLCDSVYVMYAGSVIESGVRADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGT
                     VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV"
     gene            complement(12903..13799)
                     /locus_tag="OQQ75_001818"
     CDS             complement(12903..13799)
                     /locus_tag="OQQ75_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D,D-dipeptide ABC transporter permease"
                     /protein_id="HCS1976181.1"
                     /translation="MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLML
                     LMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLV
                     VVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM
                     LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQA
                     SLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAV
                     GFNLFGDGIRDLLDPKAGGKQS"
     gene            complement(13796..14818)
                     /locus_tag="OQQ75_001819"
     CDS             complement(13796..14818)
                     /locus_tag="OQQ75_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1976182.1"
                     /translation="MTFWSILRQRCWGLVLVMAGVCVITFIISHLIPGDPARLLAGDR
                     ASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLE
                     LAFCALLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGH
                     LQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGI
                     VARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYG
                     AVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRI
                     GRGGGE"
     gene            complement(14820..16370)
                     /locus_tag="OQQ75_001820"
     CDS             complement(14820..16370)
                     /locus_tag="OQQ75_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1976183.1"
                     /translation="MKRSIPFRPTLLALVLATTFPVAHAAVPKDMLVIGKAADPQTLA
                     PAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDN
                     AKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFL
                     YTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYP
                     GNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLR
                     VTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATA
                     MQYNHDETKAKAEWDKVTSKPTSLTFLYSDKDPNWEPIALATQSSLNKLGINVKLEKL
                     ANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKL
                     LRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQV
                     FNINTMSK"
     gene            complement(16384..16965)
                     /gene="ddpX"
                     /locus_tag="OQQ75_001821"
     CDS             complement(16384..16965)
                     /gene="ddpX"
                     /locus_tag="OQQ75_001821"
                     /EC_number="3.4.13.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine dipeptidase"
                     /protein_id="HCS1976184.1"
                     /translation="MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHK
                     DAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGT
                     AIDLTLRDEHGNILDMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIS
                     SEWWHFELPQAASYPLLADQFTCFISPGTQHVS"
     gene            complement(17223..19622)
                     /gene="dosP"
                     /locus_tag="OQQ75_001822"
                     /gene_synonym="pdeO"
     CDS             complement(17223..19622)
                     /gene="dosP"
                     /locus_tag="OQQ75_001822"
                     /gene_synonym="pdeO"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensing cyclic-di-GMP phosphodiesterase"
                     /protein_id="HCS1976185.1"
                     /translation="MKLTDAENAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKL
                     WGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW
                     TRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQ
                     CNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRT
                     GEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGE
                     IICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEVQNAQSWSATIRQRDGAPAGIL
                     QIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNQHN
                     YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRI
                     EGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDVGKNHDYL
                     LSTAHNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIF
                     AETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRS
                     QNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFK
                     RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAI
                     TSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLK
                     I"
     gene            complement(19647..21028)
                     /gene="dosC"
                     /locus_tag="OQQ75_001823"
                     /pseudo
     CDS             complement(19647..21028)
                     /gene="dosC"
                     /locus_tag="OQQ75_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310122.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DosC"
     gene            complement(21400..22719)
                     /locus_tag="OQQ75_001824"
     CDS             complement(21400..22719)
                     /locus_tag="OQQ75_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 10 protein"
                     /protein_id="HCS1976186.1"
                     /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK
                     PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG
                     INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
                     NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS
                     IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIT
                     KVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD
                     YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING
                     GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS"
     gene            complement(22850..24385)
                     /gene="gadC"
                     /locus_tag="OQQ75_001825"
     CDS             complement(22850..24385)
                     /gene="gadC"
                     /locus_tag="OQQ75_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance gamma-aminobutyrate antiporter
                     GadC"
                     /protein_id="HCS1976187.1"
                     /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF
                     FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG
                     FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF
                     FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE
                     ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT
                     VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK
                     NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL
                     VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV
                     VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND
                     KKH"
BASE COUNT         6162 a         6219 c         6209 g         6085 t
ORIGIN      
        1 cgagccgttg gcttcatcgt tatagccttt aaaatcatat tcccagtgac caaaaccaat
       61 catttgatca ttgatttgcg tttctccttt aaagccgaga cgggcataag ttttatcacc
      121 atcgtcacgc ttatcatcag taaaataacg tagagcggta accttgccat aaaggtcgag
      181 tttattacca tccttgttat agacttcggc agcgtgtgct acgttcgcag ctaacaaacc
      241 agttacaacc accgcaacta tttttaattt catttaacag aatcctttta attatcgtca
      301 aacgtatttt ctaaacgaat tttaaacggc gtcatttata aatgacatac tgtttttaaa
      361 atagaatggt gattaaaaac aatgagaaaa atagatgaga taatattatt tatcgatatg
      421 tgatcgaagt cgaaatgaga tataaggtga attactggta tttgaaattt attttttaat
      481 attgtcggaa tttatctgat taattgccgg gccgtagacc cggcaattat tttaaccacg
      541 acgtgtcgcc agccagcaga gcagggaacc gccgcagacc attagcgcgc cttgccagaa
      601 tgagaacgac agcggggcgc tgagcagcac ggctgcaagc gctgaggaaa gtacgggcgt
      661 aaaatacgag cctaccgcca ttatggtgac attgccatgc aatataccga cattccatgc
      721 agcataagca aatcctaagg taaatgccgc agagatgagt ttaatcatga cgggcgtgct
      781 aaataccatt tctggttgtt gcgtaagaaa atagtaaacc cacagacttg ctcccgttag
      841 caggacaaaa acggtaattc cgttaaatcc gcgtgcgtat ttattcgtta ctgtgcaata
      901 ggctgcccag ataaacgcac caataaacgc caggaaataa ctcaatgggc tggtggtgat
      961 attattgatg atttcatcat aatgtaaccc attctcaccg cctaacaccc agcagacgcc
     1021 gaccagggct aataataatc ctggtacaat cagccagttg gttttctgac cattaaacag
     1081 aatggcaaag agaattgtca ggctgggcca cagatagttc accatacccg cttcaatcgc
     1141 ctgatgacgg gtcgccgcat accctaagga aagcgccaga cagatttcat agctgacgaa
     1201 taacagactc ccggcgagta aatagccttt cggaatctgc cgaatacgcg gaaatccaac
     1261 cgtgaagatt aacagcagcc cgcttaatga atagatagca gctgcgccgc cgaccgggcc
     1321 gagcccctcg ctgacaccgc gaatcaatcc taccatcgtg ctccacagga cgatcgctat
     1381 tagccctatg agcgttgctt tttgtcgtgt catgctcgct gttttgtctc tcttgccgtt
     1441 aaaaattaag ctgaatttta tagcattttt ttaactggcc tgtcaggcag tggtgcgttt
     1501 ttctaccgct attgaggtag gtcaatttgc gcaggcggat tattttgtgg caaacacgtg
     1561 ttctttttga tttcgcgcaa aaagattcag aattttactg ttagtttcct cgcgcagtaa
     1621 tatccctgaa aaaagaggaa agcaatggac gtcagtcgca gacaattttt taaaatctgc
     1681 gcgggcggta tggctggaac aacggtagcg gcattgggct ttgcccctaa gcaagcactg
     1741 gctcaggcgc gaaactacaa attattacgc gctaaagaga tccgtaacac ctgcacatac
     1801 tgttccgtag gttgcgggct attgatgtat agcctgggtg atggcgcgaa aaacgccaga
     1861 gaagcgattt atcacattga aggtgacccg gatcatccgg taagccgtgg tgcgctgtgc
     1921 ccaaaagggg ccggtttgct ggattacgtc aacagcgaaa accgtctgcg ctacccggaa
     1981 tatcgtgcgc caggttctga caaatggcag cgcattagct gggaagaagc attctcccgt
     2041 attgcaaagc tgatgaaagc tgaccgtgac gctaacttta ttgaaaagaa cgagcagggc
     2101 gtaacggtaa accgttggct ttctaccggt atgctgtgtg cctccggtgc cagcaacgaa
     2161 accgggatgc tgacacagaa atttgcccgc tccctcggga tgctggcggt agacaaccag
     2221 gcgcgcgtct gacacggacc aacggtagca agtcttgctc caacatttgg tcgcggtgcg
     2281 atgaccaacc actgggtgga tatcaaaaac gctaacgtcg taatggtaat gggcggtaac
     2341 gctgctgaag cgcatcccgt cggtttccgc tgggcgatgg aagcgaaaaa caacaacgat
     2401 gcaaccttga tcgctgtcga tcctcgtttt acgcgtaccg cttctgtggc ggatatttac
     2461 gcacctattc gttccggtac ggacattacg ttcctgtctg gcgttttgcg ctacctgatc
     2521 gaaaacaaca aaatcaacgc cgaatacgtt aaacattaca ccaacgccag cctgctggtg
     2581 cgtgatgatt ttgctttcga agacggcctg ttcagcggct acgacgctga aaaacgccag
     2641 tatgataagt cgtcctggaa ctatcagttc gatgaaaacg gctatgcaaa acgcgatgaa
     2701 acactgactc atccgcgctg tgtgtggaac ctgctgaaag cgcacgtttc ccgctacacg
     2761 ccggacgtcg ttgaaaacat ctgcggtacg ccaaaagccg acttcctgaa agtgtgtgaa
     2821 gtgctggcct ccaccagcgc accggatcgc acaaccacct tcctgtacgc gctgggctgg
     2881 acgcagcaca ccgtgggtgc gcagaacatc cgtactatgg cgatgatcca gttgctgctc
     2941 ggtaacatgg gtatggccgg tggcggcgtg aacgcattgc gtggtcactc caacattcag
     3001 gggctgactg acttaggtct gctctctacc agcctgccag gttatctgac gcttccgtca
     3061 gaaaaacagg ttgatttgca gtcgtatctg gaagcgaaca cgccgaaagc gacgctggct
     3121 ggtcaggtga actactggag caactatccg aagttcttcg ttagcctgat gaaatctttc
     3181 tatggcgatg ccgcgcagaa agagaacaac tggggctatg actggctgcc gaagtgggac
     3241 cagacctacg acgtcatcaa gtatttcaac atgatggacg aaggcaaagt caccggttat
     3301 ttctgccagg gctttaaccc ggttgcgtcc ttcccggaca aaaacaaagt ggtgagctgc
     3361 ctgagcaagc tgaagtacat ggtggttatc gatccgctgg tgactgaaac ctctaccttc
     3421 tggcagaacc acggcgagtc gaacgatgtc gatccggcgt ctattcagac tgaagtattc
     3481 cgtctgcctt cgacctgctt tgccgaagaa gatggttcta tcgctaactc cggtcgctgg
     3541 ttgcagtggc actggaaagg tcaggacgcg ccgggcgaag cgcgtaacga cggcgaaatt
     3601 ctggcgggta tctaccatca tctgcgcgag ctgtaccagg ccgaaggtgg taaaggcgta
     3661 gaaccgctga tgaagatgag ctggaactac aagcagccgc acgaaccgca atctgacgaa
     3721 gtggctaaag agaacaacgg ctacgcgctg gaagatctct atgacgctaa tggcgtgctt
     3781 attgcgaaga aaggtcagtt gctgagtagc tttgcgcatc tgcgtgatga cggtacaacc
     3841 gcatcttctt gctggatcta caccggtagc tggacagagc agggcaacca gatggctaac
     3901 cgcgataact ccgacccgtc cggtctgggg aatacgctgg gatgggcctg ggcgtggccg
     3961 ctcaaccgtc gcgtgctgta caaccgtgct tcggcggata tcaacggtaa accgtgggat
     4021 ccgaaacgga tgctgatcca gtggaacggc agcaagtgga cgggtaacga tattcctgac
     4081 ttcggcaatg ccgcaccggg tacgccaacc gggccgttta tcatgcagcc ggaagggatg
     4141 ggacgcctgt ttgccatcaa caaaatggcg gaaggtccgt tcccggaaca ctacgagccg
     4201 attgaaacgc cgctgggcac taacccgctg catccgaacg tggtgtctaa cccggttgtt
     4261 cgtctgtatg aacaagacgc gctgcggatg ggtaaaaaag agcagttccc gtatgtgggt
     4321 acgacctatc gtctgaccga gcacttccac acctggacca agcacgcatt gctcaacgca
     4381 attgctcagc cggaacagtt tgtggaaatc agcgaaacgc tggcggcggc gaaaggcatt
     4441 aataatggcg agcgtgtcac tgtctccagc aagcgtggct ttatccgcgc ggtggctgtg
     4501 gtaacgcgtc gtctgaaacc gctgaatgta aatggtcagc aggttgaaac ggtgggtatt
     4561 ccaatccact ggggctttga gggtgtcgcg cgtaaaggtt atatcgctaa cactctgacg
     4621 ccgaatgtcg gtgatgcaaa ctcgcaaacg ccggaatata aagcgttctt agtcaacatc
     4681 gagaaggcgt aagggggcga acagatggct atggaaacgc aggacattat caaaaggtcc
     4741 gcaactaact ccatcacgcc gccttctcag gtgcgtgatt acaaagcaga agtcgcaaaa
     4801 cttatcgacg tttccacctg tatcggctgt aaagcctgtc aggtggcgtg ttcggagtgg
     4861 aacgacatcc gtgatgaagt ggggcactgc gtcggggttt acgataaccc cgccgatctg
     4921 agcgccaagt cctggacggt gatgcgcttt agcgaaaccg aacagaacgg caagctggag
     4981 tggctgatcc gtaaagacgg ctgtatgcac tgtgaagatc ccggctgcct gaaggcgtgc
     5041 ccgtctgctg gtgcaatcat tcagtacgct aacgggattg tcgatttcca gtcggaaaac
     5101 tgcatcggct gtggttactg cattgccggg tgtccgttta atattccgcg cctcaacaaa
     5161 gaggataacc gggtatataa atgcacgctc tgcgtcgatc gcgtcagcgt cggccaggaa
     5221 ccggcttgtg tgaaaacctg tccgaccggg gctatccact tcggcaccaa gaaggagatg
     5281 ctggagctgg cggaacagcg cgtggcgaaa ctgaaagcgc gtggttacga acatgctggc
     5341 gtctacaacc cggaaggggt cggtggtacg cacgttatgt acgtgctgca tcacgccgat
     5401 cagccggagc tgtatcacgg tctgccgaaa gatccgaaga tcgacacctc ggtaagcctg
     5461 tggaaaggcg cgttgaaacc gctggcagcg gctggcttta ttgccacttt tgccgggttg
     5521 attttccact acatcggtat tggcccgaat aaggaagtgg acgatgacga ggaggatcat
     5581 catgagtaag tcgaaaatga ttgtgcgcac caaatttatt gatcgcgtct gtcactggac
     5641 cgtggtgatt tgcttcttcc tggtggcgct gtccgggatt tcgttcttct tcccgacgct
     5701 gcaatggctg acgcaaacct tcggtacgcc gcagatggga cgcattttgc acccgttctt
     5761 cggcattgcg attttcgtcg cgctgatgtt tatgtttgtg cgttttgtgc atcacaacat
     5821 cccggataag aaagatattc cgtggctatt gaacattgtc gaagtattaa aaggcaatga
     5881 gcacaaagtg gcggatgttg gtaagtacaa cgccgggcaa aagatgatgt tctggtcgat
     5941 catgagcatg attttcgtgc tgttggtgac cggggtgatt atctggcgtc cgtactttgc
     6001 gcagtacttc ccgatgcagg ttgttcgcta cagcctgctg atccacgcgg ctgccggtat
     6061 catcctgatc cacgccatcc tgatccatat gtatatggca ttctgggtga aaggatcgat
     6121 taaagggatg atcgaaggga aggtaagccg tcgctgggcg aagaaacacc atccgcgctg
     6181 gtatcgtgaa atcgagaagg cagaagcgaa aaaagagagt gaagaaggga tataatctct
     6241 tttgaacttt aagctgaaaa tggcgcttta agaagcgcca tttttttatt gcgtaaccag
     6301 acggcgcagt cgcgacacat ccaccgtttt ttcagcctct gccagactcc aggcgttttg
     6361 cagattcagc cacatttgcg gcgaactgcc gatcaccacg gaaagtttaa ttgccatttc
     6421 tggcgtcaaa gctgcttttc cggtcagcaa tcggcttgcc gttgagggcg caatttccat
     6481 tgctctggca aactcgcgca ggctgacatt aagttcgtcc agtgattcct gaataatgtc
     6541 ccccgggcgg ggatgattgg ccattttcat tagtgtcttt actctcagta gcgttccttc
     6601 tctgggaaca ctatcattat tgttccttcc tacgcaacaa taatccattt agccatttca
     6661 tgttggagag tgtgcgatgc tgcgacccga acatgggagt cgcagcaaag acctcttagt
     6721 gacggaaatc aatcaccata cggccacgga ttttgccttc ttccatctcg gtaaagatgg
     6781 tgttgatgtc cgctaacgga cgcagggcga ctttcggcac cactttgcct tcggcggcaa
     6841 actggaaggc ttcggttaga tcctggcgcg tgccgaccag cgaaccgacc acttcaatgc
     6901 catccagcac aagacgtggg atatccaggc tcatagactc cggcggcaga ccgacagcca
     6961 caacacgacc gcctgcacgg acagcatcaa ctgccgagtt aaacgcagct ttagctactg
     7021 ctgttaccac cgcagcgtga gcgccaccgg ttttctcctg cacaatttag gcggcgtctt
     7081 cggtgcgtga gttaatcgct aaatctgcac ccatttcggt tgccagtttt aactgctcat
     7141 cattgacatc aatggcgatc actttggcgt taaagacatt cttcgcgtat tgcagggcga
     7201 ggttacccag accgccaaga ccgtagatag caatccactg accgggacga atttttgaca
     7261 gtttaacggc tttgtaggtg gtgacccccg cacaggtaat gctgctggcc gccgccgagt
     7321 ccagaccatc tggcactttt accgcgtaat cggcgaccac gatgcactct tccgccatcc
     7381 cgccatcaac gctgtatccg gcatttttaa ctgaacggca gagcgtttcg ttaccactgt
     7441 tacagtattc gcaatgaccg catccttcgt aaaaccacgc cacgctggca cgatcgcctg
     7501 gttttaatga ggtgacacct gggccaactt ctgccaccac accgatgcct tcatggccca
     7561 gaattacccc agttttgtca ccaaaatcgc cattcttaac atgaagatcg gtatgacata
     7621 caccacaaca ctccattttc agcagggctt cgccatgttt cagtgagcgc agtgttttat
     7681 ccgtaacgtc aacatgatga tccttcgtaa caactgcagc cttcatagtt cctccttttc
     7741 ggatgatgtt ctgcatagca ggtgaggcaa atgagattta ttcgccacta cccagtatgg
     7801 atgagatctg aaaaagggag agggaaatag cccggtagcc ttcactaccg ggcgcaggct
     7861 tagatggagg tacggcggta gtcgcggtat tcggcttgcc agaaattatc gtcaatggct
     7921 tgttgcaaag cttcagcaga cgttttcacc gccacgcctt gctgctgcgc cattttgcca
     7981 accgcaaacg caattgcgcg ggagactttc tgaatatctt tcagttccgg tagtaccaga
     8041 ccttcgccgt tcagcaccag cggcgaatac tgagcaagcg tttcacttgc tgacatcagc
     8101 atctcatcgg tgatacgtga cgcgccggaa gcaataacac ccagcccgat gccagggaaa
     8161 ataaaggcgt tgttacactg ggcgataggg tagattttat ctttccatac cactggatta
     8221 aacgggctgc cagtggcgac cagcgcgtta ccttcggtcc aggcgataat gtcctgcggt
     8281 gtggcttcca cgcgtgacgt cgggttagac agcggcatca cgatcggacg cggacagtgt
     8341 ttatgcatct cacggatgat ctcttccgta aacagcccgg tctgtcctga gacgccaatc
     8401 agaatatctg gttttacatt gcgcaccaca tccagcagtg acagcacatc gctgtcggta
     8461 tcccagtcac tgaggttttc gcgtttctgc accagtttgg tctggaaagg cagcaggttc
     8521 ggcatcttgt ccgtcagcag gccaaagcga tcgaccataa agactttctg ccgcgccgct
     8581 tcctcgctta atccttcgcg ctgggtctgg gcgatgatca tttcggcaat gccgcatccc
     8641 gctgaacctg caccaaggaa gacgattttt ttctcgctta actgaccacc tgccgctcgg
     8701 cttgctgcga tcagtgtgcc gactgttacc gccgcagtgc cctgaatgtc atcgttaaaa
     8761 gaacaaattt cattgcgata gcggttaagt aacggcatcg catttttttg agcaaagtct
     8821 tcaaactgca acagcacgtc tggccagcgt tgtttcacag cctggataaa ttcatcaacg
     8881 aattcatagt attcgtcgtc aatgatacgc ggattacgcc agcccatata cagcggatcg
     8941 ttaagcagct gttggttgtt cgttccgaca tccagcacca ccggaagggt atacgccggg
     9001 ctgatgccgc cacaggcggt atagagcgac agtttaccga tcggaatgcc catcccgccg
     9061 atgccctggt caccaagccc cagaatacgt tcaccgtcag tcaccacaat cactttgata
     9121 ttatggttcg gtacgttttg cagaatatcg tccatattgt ggcggttctg gtaagagata
     9181 aacacgccgc gtgaacggcg gtagatctca gaaaaacgct cacaggctgc gccgacggtt
     9241 ggggtataaa taacaggcat catctcatca agatgattgt ttaccagacg gtagaagagg
     9301 gtttcgttgg tgtcctggat gttacgcagg tagatgtgtt tgtcgatttc ggttttgaat
     9361 ccctgatact ggatccatgc tcgttccgct tgttcttcga tggtttcgac cacttccggc
     9421 agtaacccca gcaggttgaa gttacggcgt tcttccatgc tgaaggcact gcctttattc
     9481 aacaacggaa attccagcag tacagggcca gcgtaaggga tataaagcga acgctgtttt
     9541 tttgtttttg gttccatgtc actcactctt ttttgaatat ccatccctgg cacgctttta
     9601 tcgtctttgc tttaccgcca gggcgtcggc cccaagtata aagcagataa aaacaaaaac
     9661 accattgcgc aggcaatggt gtttaatcgt cattgaggac tgatggttat gaattacttt
     9721 tcagcggggc gttttctgcc ggttgggtta tttaccacgc tggatttgtc accttcggta
     9781 actattttgc gctggttaga aattttatgg tccagtccaa gaatatgacg tgcctgacgg
     9841 ttcgatttca ttttaactcc tcaatcctgt tgctagtttt aaggacaaca tcgccgtagc
     9901 gaagaaacac gtgctaaacc cctaaattag gttgccgatc aagcatagca ccttaaagcg
     9961 tagggtgctg gccactgacc acataattga tcgtttgctg gtagatatca ctgaggatgt
    10021 cgttatcaga agcttccacc catttggtca gctccatgag aatgtcatct tcagtgacaa
    10081 caccgtgctc tgcccgaagg ccttgctcaa tggcattaac cagagcgggt tctgctgttg
    10141 aattttctgc ctgataataa gtaaacatag tgattctccg tgtctgtgta tttatggtgt
    10201 ctgctacgga tcgcagattt ataaagcaca ttcagcatgg caaatatttg ccgctttgtt
    10261 gttaagatta gtcctggttg atgattttta tattttaacc tcatgatatt gataggtatt
    10321 attattgtgg tgagttgatt aatattaatg caatatctct tgggttatat attcccggtt
    10381 atctattgtg gaaatttaat ttaagtgcag aagtaatatt tctgccggat ttttattcgg
    10441 aatatcctgc ttatcctcgt gctgtttctc acgtagtcta taatttcctt tttaagccca
    10501 catgagagca acaatgacaa tccataagaa aggtcaggca cactgggaag gcgatatcaa
    10561 acgcgggaag ggaacagtat ccaccgagag tggcgtgctg aaccaacagc cgtatggatt
    10621 taacacgcgt tttgaaggcg aaaaaggaac taaccctgaa gaactgattg gcgcagcgca
    10681 tgccgcatgt ttctcaatgg cgctttcatt catgctgggg gaagcgggat ttacgccaac
    10741 atcgattgat accatcgccg atgtgtcgct ggataaagtg gatgccggtt ttgcgattac
    10801 gaaaatcgca ctgaagagtg aagttgcggt gccgggtatt gatgcctcta cctttgacgg
    10861 catcatccag aaagcaaaag caggatgccc ggtctctcag gtactgaaag cggaaattac
    10921 gctggattac cagttgaaat cgtaaagcat tgccggatga cgtgtcaggc gcgtgaatgc
    10981 ctgatgcgtt gttagcatct ctacagcgcc cgccagcacc ggagctcacg tccgtcctcc
    11041 cttattgcta atgattgccg gacttcacat ccgctggttg caagggggca acgttcgtag
    11101 aaaaaacagc cttgcggcaa cgtgcggttt cccggcagat ccgttttacg taatgcccat
    11161 tcttcctcca gcggtttatc aatggcgggg agggaatcca gcaataatcg ggtgtatgga
    11221 tgtgccggag ccgttagcac ctgttgcgcg tcgcccagtt ctacaatctg cccgagatac
    11281 atcaccgcca cccgatcgct catatgacgt atcaccgaga cattgtgtga aatcagcaca
    11341 taggtcagcc cgtgattttc ctgtagcgtt accagtaaat tgaggatctg cgcctgcacg
    11401 gagatatcca gcgcagaggt tggctcatca agcacaatca cgtcaggctg cgaagagagt
    11461 gctctggcaa tggcgatacg ttgccgctgc ccgccggaga acgcatgagg caggcggtcg
    11521 agatactccg gacgaatacc cacctgcaca gccagctcct ctaccaacgc tcgccgctgt
    11581 tgttcactac tacgcttagc tatccagagc ggttctgtga tgatgcgcca caccggtaag
    11641 cgcggattga gcgaagagag cgggtcctga aacaccatct gcataatgcg ttgtgagcca
    11701 gaacggatgt actgcccgtg gctcggttgc agcataccca ttaaaagctg tgcgagggtg
    11761 cttttgccgc agcctgactc gccgacgatc cctaaggttt caccacggcg gatctgtaaa
    11821 tcaataccat taatcgcatg aacatgttcc gtagttttac caagccagtt tttacgggcc
    11881 gggaaattga tatggacgcc gcgtaacgtt aataacgtgt cagacactta tgacctcctg
    11941 ctgcggatac caacaggcgc agcgctggtt gttgtcacca cacgctgtca gcgccgggac
    12001 gttttcacac tgtgcacctg ccgcatagca acgatcgcga aaagcgcagc cgtcaggcaa
    12061 atgggtgagg tttggtaccg tccctggaat ggcgggtaat agctggcgtg gtactccatg
    12121 ttctggtgca cattggagca aaccaatggt atacggatgc cggggatgat ggataacgtc
    12181 tgccctcacg ccgctttcaa ttacgcttcc ggcatacatc acgtaaacgc tatcgcacag
    12241 ttgcgacacc acggccatat catggctgat gaacagaacc gcagttccac tggcgccggc
    12301 tttatgttta agcaaacgca gtacctgcaa ctgcaccgta acgtccagcg ccgtagtcgg
    12361 ttcgtcggca ataatcaatt gcggctcgca ggagaatgcc agcgcaatca ttacccgctg
    12421 gcgcatacca cctgaaagct caaacggata gcgcgacata acttccacgg catccgggat
    12481 ttgcatctct tccagcagga caatcgcttt agctctggct tcccgacgac ttattggttg
    12541 atgatggcgg atcacgtcca tcatctgaag acctattcga cgtgtcggat tgagggcggt
    12601 catcggttcc tgaaagatca tcgccactcg tgcgccgcgc cactgacgaa gctgtttttc
    12661 ccgagcgtta agaacatcgt ctcccagcag tgaaatctgc ccccgatgta cgcaataact
    12721 gcccgtcggt agcagacgca taatcagcat tgcggtgact gatttacctg agccggattc
    12781 tcccaccaga ccgacaattt caccgcggtt aatctgcaag gacacattgt tgagcgcgtg
    12841 aacatcaccg ttaaaaccgg ggaaactcaa atgcagctgt tgaatgtcca gaacgggctg
    12901 ggtcatgact gctttcctcc tgctttcggg tcaagcagat cgcgaatacc atcaccaaag
    12961 agattaaacc caacggcggt aagcaaaatc gctgcccctg gaaatgcgca ataccaccac
    13021 tgatcgagta catagttgcg accattcgct accatcgcgc cccattcagc actcggttgt
    13081 tgagcaccca ggccaataaa tcccaacgtg gcggccatta aaatcgcgct accgatatcc
    13141 agcgatgcct gcacgatcag cggcggcagg gagttacgta aaatatgcca gctgatcaga
    13201 tgccaacgcg acgcaccaaa ggttttcgcc gcctgaacat aggtatactg gcgtacaact
    13261 aatgcttgcc cccgcgccag gcgcacataa aagggaattc gcacaatagc aatcgccagc
    13321 atggcgttaa ataaactcgg cccgagagcg gcagccagtg ccattgtcag taccaacgaa
    13381 ggaatcgaca gcataatgtc catgatgcgc atgatgatgg cgtctgcgcg tccgccaagc
    13441 acaccggata gacatccgag tagcgaacca atcatacccg caatggcaac cacgactaat
    13501 ccggcgagaa ttgattgctg actgccgacc agtacgcggc tgaacagatc gcgtcccact
    13561 tcatcggtgc caaaccagtg cgccgcagaa ggcggcaaaa ggcgggcggt taaatcaatg
    13621 gcgttgggat catgcgtcgc aagccacggt gaaaaaaaca tcatcaatag cattaataca
    13681 atgatgactg cgccggtcac ggtgagcgga ctgcctttca gcatccatat cagttttgca
    13741 ccgttaaatc gcgtttgttt ttgtgggcgt acggcggacg tttcctcgct tagcatcatt
    13801 caccacctcc acgtccgata cgcggatcaa tccacaaata gagcaaatcc accaccaggt
    13861 tgaccagcac ataagcaaat gaaaccacga cggcaaagcc catcactgcc gggaagtcga
    13921 gcgcctgtat tgatgttact acccatgcac ccattccggg ccaggcaaaa acggtttcgg
    13981 tgagcactgc gccatacaac aaatcgccca gcgccagacc caatacggta atcgatggga
    14041 tcaacgcatt gggtagcgca taacataaaa cgatatacca gccgggcaag ccgctggccc
    14101 gggcggtacg aatgtagtct tcactcaatt gttccagcat cgctgagcgg atctggcgag
    14161 cgacaattcc caggtgaacg aacgccagcg ttaatgccgg taagatgaga tgttgcaacg
    14221 cattgaagaa gacttcaccg ttgccttcaa gcagcgcatc gagcagataa aagccggtaa
    14281 cgtgcgttgg tggatccagc cagtcatcaa gccttccgcc gccgggaaga atttgcagat
    14341 gaccataaaa cagcacaatg acgcccagtc caagccaaaa cgcaggtgtg gagattccgg
    14401 taatggccat tattcgcacc agatgatcca gccagcgatt tcgccagact gcagagagta
    14461 tgcccagcgg gatgccaatc aggagtgcca gcagcagggc acaaaaagcc agttccagcg
    14521 tcgccgggaa aaatatacgc aactcttcca acaccggacg cccggtacga atggatgttc
    14581 ccaggtcacc atgaaacagg tcgctgacgt agcggtaaaa ctgtacatac agtggctggt
    14641 ccagtcccag ttgctggcga atattttcca cgatagcatc gctggcgcgg tcacccgcca
    14701 gtaaccgcgc cggatcgcca gggatcagat gcgagataat aaacgtaatc acgcagacgc
    14761 ccgccatcac gagcaccagc ccccagcagc gttggcgtaa aatactccag aaggtcacgt
    14821 tatttactca tggtattgat attgaagacc tgttccagca tgggattgaa cacaaagcct
    14881 ttcacctctt tgttcatcgc cagttggtag tttttctgga acaggtacac ataagcagcg
    14941 tcatcaatga cgattttctg tgcctgctgg tagtcccggg tacgctgcgt ctggtcggtg
    15001 gtcgcaagcg cattgcgcag taacttatcg acctcactgt tttcatagaa cgagcggtta
    15061 cccggcagac cttttttgtc tgactcaaac cagtaattca taaacatata cgggtcggca
    15121 aaatccggac tccagttgcc aatcgcaatg tcgtaatcac ctttacccac tctgtcgcgc
    15181 atggtggcgt tcgccagctt ttccagcttc acattgatgc ccagcttgtt gagactggat
    15241 tgtgtcgcca gagcaatagg ctcccagttc ggatccttat cggagtagag aaacgtcagg
    15301 ctggtgggtt tgctcgtcac tttatcccat tcggctttgg ctttcgtttc gtcatggttg
    15361 tattgcattg ccgtcgcatc gtagccccac atgccttccg gaatcgggcc gcgcatctgt
    15421 tttccgttac cactcagaat gccgttaacc atgccctgat aatcggtaga ccaggaaatg
    15481 gcccgacgca gatccgcctg attaagaggc gctttgctgt tattcagata caggtaggtg
    15541 acgcgcagtg acggatactc tgccacattg actttgtttt cctgcttcag ggcgttgagt
    15601 tgatccaccg gcagcgcatc ggcaatgtca atatcaccac gggagagctg caggcgacgg
    15661 gaggcacttt caccaataat ttttaccgat actcgcttaa agttcggttt attgccaggg
    15721 taatgcggat ttggcaccag aactaattgc tgaccttttt gccagctttt cagcataaat
    15781 ggtccggaac cggcggtatt ttgcgcgagg aagccgcggg catcatccgc tgcatgttcc
    15841 tttaacaccg ccggattgat aatggatgca ccgtcattcg ccagcgtgta gaggaacggt
    15901 gcgaatggct ggctaagggt aaacttcacc gtatgttcgt cgggagcatc aatctttaaa
    15961 tctttgggaa atgcttctgc tggcccctgg ccgattttta gtagccgctc aaaagagagt
    16021 tttactgctt cggcagtgac cggtgtgcca tcggcaaatt tagcattgtc cttcagggtg
    16081 aacgtccact ctttttgatc gtcagacgct ttccagctac ttgccagatc gccttcaacg
    16141 tcggttgagc ctttatcacc gtccgttttg tactgaacca gccgctgata agacgggtag
    16201 gtcaccgtcc agtcgttatt atctattgtt accgccgggg cgagggtttg tggatcggcg
    16261 gccttaccaa tcaccagcat atctttcggt acggcggcgt gcgcaaccgg gaaagttgtg
    16321 gcaaggacga gcgcgagcaa tgtaggacga aacggtatcg atctcttcat gacagtttcc
    16381 tgattaactg acgtgctgtg tgccagggga tataaaacag gtgaattgat cagcgagcag
    16441 tgggtaactc gctgcctggg gtaattcgaa gtgccaccat tcgctggaga taccgacaaa
    16501 accgccacca gtcataatcg cattcagcaa cagccgattg cgctgagcgg cgggcgggac
    16561 ggaagggtga taggcatggg agcgctcgtg catttcatcg aaccctgcgc ccatatcgag
    16621 gatgttcccg tgctcatcac gaagcgtcag gtcgatcgcc gtgccacggc tgtgattaga
    16681 accgaccgtc acatcaacaa catattgcgg gtctgggcag gcttgccaca acatcgcctg
    16741 tgcttgttgt gggcgatacg catcgtaaat caccagttgt aagcctgaca gctgggcgat
    16801 actgatactt ttcgccagcg cggtaatcgc atccttgtgt agcagacaac gcgcttgctg
    16861 ataaatagct ttacctgtga tgttatcagc gcaggcgtat ttcaattcga tctccagatc
    16921 agggaagatt acggctaaat caaccagttc ggtggtatcc gacataaacg gttcctgtat
    16981 aagacaaaaa ttgctgcgct ttccgcttat gcagatctca tgccatgccg ggataagcgc
    17041 cagaatgctg gcttaaagtt atatttttta acttttgatc aacatttgtg cagcgtagtg
    17101 cagttttggt gcaagagggg aagttaagga aggaatctcc cggaatcgta gatgaaatca
    17161 cagtatttaa gtgacggtgt cacgttaaat gaaaacccgc gagtgcgggc gagaggaatt
    17221 tgtcagattt tcagcggtaa cacgctgctc atccagcctg gaatttcttc ggcgggtagg
    17281 gggcgggaaa agaaatatcc ctgaataacg cgacagtgga tcttgcgtag catctcaaat
    17341 tgctctttgg tttcgacgcc ttccgccacg acggttaaat tgaggctttg cccaatgctg
    17401 gtaatggctt caagtaaggc aaggatgcgt ttttcggtca gacaacgatc gacaaaactt
    17461 ttgtcaattt tgatttccgt taccggaaga ctgactaagc gggataatcc ggaaaagccc
    17521 gtaccaaaat catctaccga taagcccacg cccatatcac gcaggatctg aatgcgctta
    17581 aagatttcgg tatcgtgttc catcatcatg ctttccgtga tttctaccgt cagctggtgg
    17641 ccgtcaatac cccaggcgtg cattgcatca gacacctgat taggcagttg attactgcga
    17701 aagtgcagtg ccgacaagtt aacggaaagc gccgggatat gaatattctg gctacgccat
    17761 tctgctaact gacggcaagc ttccgcgatg acccagcgcc caatattttc gatttcacca
    17821 atctcttctg cgagaggaat aaaccgtgaa gggggcacat gaccatgctg gggatcgtgc
    17881 cagcgcgcaa gggcttcgat gccgtacagt tcacccgttt ctgcgaagat ttgcggctgg
    17941 taaacaagtt tcagttggtt attgctaatc gcttctttca gcgctgcgcc taaaaccaaa
    18001 cgctctttta ccatttcgtt catcgccggg ctgaagaact gccagccgtt accgccattc
    18061 ttgcgaatat aatctattgc attgtgagca gtggagagta ggtaatcgtg gtttttaccc
    18121 acgtcgtagc tgatgccaat actcaaggta agcgggaatg gtttatcgtc aatcattatc
    18181 ggcttgctga ccacattccg tagctcatcg gcgatctggg taatgttact gacgtcgttt
    18241 tccaggctca cgaggacaaa ctgcgtacct tcgatacgac agagatactg atccggtttg
    18301 agttttccac gaaagcgatt gaccacttcc agcaatgcct gatcggccca cgcatagcca
    18361 aggctatcaa tcacatcctg aatatggtca acaccgatga gatacaccac cggagagacg
    18421 gctttgtcga ccaggtcatc gaggtaattg tgctggttat tgcgatttgg cagaccggtc
    18481 atcggatcaa attggatgag ttgttcaata tgctggcggc ttttttcctg ttccagcgcc
    18541 agcgcggcca tatgctgact gatatctgcc acgcgttcga taaaggcgct ggtttctgct
    18601 cctgacgagg ttttaatttg caggatcccc gcaggcgcgc catcacgctg acgaatggtc
    18661 gctgaccagc tttgcgcatt ttgaacttct gcaccgtgcg aagatgacgc ccagtgtatc
    18721 ggcatcccgt tgcgcagtgc gaacagcgaa acatgcgatt cgttgagaac agattcgatg
    18781 ttacgacaaa tgatttcccc catttcatga aatggcgggc tgctgcacat ggcggcgaga
    18841 atattgcctt caagctggcg gatttgccgt tcttcggtga tatccgagaa agtcattacc
    18901 aggttctgca gatgcgcgag cacgtcataa accgggctga tagaggcttt aatccagatt
    18961 ttttcaccgg tgcgcgtcaa cagcagaaat tcgtcctgat cgcgggcggt tttccatagc
    19021 aactgttgta aacgaatgcg gttatcggca gggaattcag gaatgttcag gagtgtatcg
    19081 ggctgcatac cgctggcttc gctaatgcag taaccaaaca tttcggtaaa tgcgcgattg
    19141 cactgcacaa tatggcgttc cggatcgagg acaatcaccg gtcggtcgag atggtcaacg
    19201 gcaataatca attgtcgggt ctgttctttt tgcgccattt ctacgctggc atcccgtacc
    19261 agcgccaggt aataaacttt cccctcggcg ctcactttcg atagcgcaaa acgggtccag
    19321 attttactgc cgtctttttt ctccagctgc agctcccgac tcatcccctc gacgcgcgct
    19381 ttaccacctt cacggttatg acgaatgtat tcaggatgcg caggacgcaa atcccgcgga
    19441 atcagcatat caatgttatt gccaatgact tcttcacgtt tgtaccccca gagcttctct
    19501 gcggcggggt tgaaaaacat cacttcatca ttttcgttaa ttaacaccgc gcccatcata
    19561 ttttgttcaa gggcggggaa aaaaatgcca tcggcggcat tttccgcatc ggttagcttc
    19621 atgattacct ctgcatcctg gcgcatctaa agactggctt tccagagttc aacacggttt
    19681 ctacctcgtc ttttggcgat atacagagct tcatcggcta tttgaatgag gcgctcatag
    19741 tcaggatgac cattaaacat ggcggcaccg atggaaagtg agagggcaat atcctcgccg
    19801 tttgcggctt tcagtttggt tttctccacc cgactgcgaa tacgttctgc ggtacgtaac
    19861 gtttcgtttt cagaagcttc agtcaaaaca atgataaatt catcgccccc gtagcgaaaa
    19921 acataatcac tactgcggac gttgtcataa aaggcctgag agactttacg cagaatttca
    19981 tcgccagtgt tatggcccca cgtatcgttg atctctttga atttatcaac gtcaataatc
    20041 agcactgaca gcggtgtacc ggtccggttg gcatgggcaa tttcgcgttt gaagatagtc
    20101 ggcaggaagc ggcggttaag taatttcgtc agtacatcca taccgacttc gtggcgcgat
    20161 acttcttcaa acaattcacg cagcaaggta ataatttgcg atacagtatt tcttatctgt
    20221 aataaaaatt tcacccgcag acttctgtta ttcaaattcc tggtgttacg catggtttga
    20281 ttgaatatac cgtcgaaatc ctgaatcaga cgggagatat gcctacttcg gcaatgccac
    20341 taaaataatg tcgaccttta tggttaaacc acaggccaaa atcagcctgg cttaaaggca
    20401 aactactgcc taaatcagaa tccagcagga ttttatagat aatatctatt tcccatgaaa
    20461 gtattgaggc tatttgccgt tctttttctt cttcggcgtt ttctagtaac gagaagatac
    20521 gatagttttc atcttccttt gaggcactac tgtcactaaa ggtaaacgcg cgggtcatca
    20581 cttccatagc gatatcaata ctgttaatcg agaaatggta gacctgaagt ttttctgcgg
    20641 cagaataatc cgaagagaag attaccggat agaggatttt tttcagcacc cgaaacccca
    20701 tctcgacaat ttctaccgga attcctatgc gggcatgcac ttccgcgacg gtatgctgga
    20761 tttgtattag cctttcgaca tcgtcaacct gggcagaaag cacgttaata atccagcgtt
    20821 ccatcgcact tttcaactgc cgctcaactt gttcattact caagaattct tcggcatgcg
    20881 ggtcgatgcg gacaattcga taaaactcga tactcagata atgagcatgc gcaacggcaa
    20941 tttccgcggc tttagcacga atgagtggat ctgcctgttc gacaagtccg gtccactcat
    21001 ctttcattct tttaaaatac atctccataa ttcacaccct tataaggctg ggaaatcaga
    21061 cggaatcaaa acgcaacgtg cgagatcgac taactgcacc atattctcct gaaatatgaa
    21121 gatatactga aaagaaataa gcgacttagg acagtttcaa tctacgctac tgttcttcag
    21181 aagagtatag cccatcgtaa ttatttttcg gtgacagcga atatcgtatg gtttttcata
    21241 ttcatacatt tttattaggg atttatagct gtttaactaa gtgtggttaa ttgcgtggtt
    21301 aatttgactt atgtaagcat gattactagt gggatatttc acaaggtgta acaagccggt
    21361 gggtaaagca ccggcttgtt acaaagtaag catgggagtt taactgcccc aacgactttg
    21421 cagatagctg accgcttgtt gagtctgcgg tttattcaga tagtcctcac ggaacaagat
    21481 ggtgccgcta atttctggta ccgcatcgtt aagatcgagc tgctttttca gttccggtac
    21541 gccgccgtta atcatccagt ctggctctat ctttgaaggt tcacccactt tatagaaggc
    21601 gataccgata tacaggcggg tcctggtcgg tttaacgaca tccgcccacc attttgccaa
    21661 cacgtcataa cgcgcggcac tccgtgagaa cggccagtaa atttggggag caatgtaatc
    21721 cagcaatcct tgttccaccc atcgacgggt gtcagcgtag gattcgtcat aggctgccgc
    21781 gcctcgggta tcggaaccga gcggatcgtg tgatcggtta cgccacacgc ctgccgggct
    21841 aacgccaaat tcgactcccg gcttaatgct tttaatggtg tgcgatactt ttgtaattaa
    21901 ctgctgagta ttgttgcgcc gccagtctgc ttttgacgca aatgcgcctc cgtatttacg
    21961 gtacgtttcg ttatcattta gccgtgaacc cggtgactcc gtatagaaat agtcgtcaaa
    22021 ctgcacgcca tctaccggat agcgggaaac cacttcggcg actattgatg tgatccagtc
    22081 ctgaacctca gggatgcccg ggtcgaggac aaagcgatcg ccagacgttc tgatccagtc
    22141 acggtgttgc acatagacgc tcgccggttg ttgagacaga gtgctattca gttccctgat
    22201 agtaccgggc ttcgtattaa ccgatacgcg ataggggtta aaccaggcgt gtactttcat
    22261 cccacgcttg tgggcttcgt cgagcataaa ttgcagcgga tcgtaacccg gattttcacc
    22321 aatcttaccg gtcataagat cggaccacgg caaaattttt gatggccaca gggcggtacc
    22381 gtccggcttg acctggaaaa agaccgtgtt tataccgaga cgttgcagat gatccagttt
    22441 gtcgatcatc gcctgttgtt gtacacgggc ccggctggtg gggttactaa tgttaaccga
    22501 ggaaaccggt ggccagtcga ggcgagacac cgtggccagc cagatgccac gcatcggttg
    22561 tgacgattgt tgcgtcgtgg ctggtggctt tgaacctgct ggtggtgtca ccatggactc
    22621 tggaggcgtg cttttacaac tacacagtaa aagtgccagt gcaaccagta tcgctggtct
    22681 tctaatcgtt aatttcttgt ttcgggagca gatatccata tgtgctggtt tccggtaaac
    22741 agatgtgcgc tcattctcgt acttatcccg gttaagtcaa tacgacagca agcacgaaaa
    22801 agggagcgat gaattatcgc tcccttgtct tataaccatt cagacatggt tagtgtttct
    22861 tgtcattcat cacaatatag tgtggtgaac gtgcacgcgg gtgcaggaag aagtgacctt
    22921 ttggtgcgtt ctgactgttg attggctcca gagtgacgcc ggtattcgct ttgcctttac
    22981 gatcatgaac agcatagaga ataaagggca gggcaagtac caccaggaaa ctaacgacca
    23041 gtaattcaac atacatatcg gtagagtcac cctggatgtt atccggcggc aggaaggaaa
    23101 caataaacgc cataattgaa gtcagcagac cgacaattgc cacgaccagt ttcacccctt
    23161 taccaccagg gatattaaat gtgcgtttta agtcaggatg tttaagaacc aacacaatgt
    23221 agccaataaa cagcatgaaa taagcacaca gataaatcac caccgtcagc gccagtgcga
    23281 tcaggaagga catgttgtta ccgccaccgg tattggtgag gatgatcaac gcgatagaag
    23341 taatcaccag ctgcgaaatg accagcgtta ccggtacgcc atttttgttc attttagcga
    23401 atgccgctgg cagcaggttt ttctgcgctg tgacatacat cccgcgagaa ggaccaacaa
    23461 tccaggaggc gatttccgcc agaacaccca gcaacagcag tgcggagatc acgcgaaccg
    23521 tccactcaat ttccggtgcc acatgggaca tcagaacggt aaaggtttgc attacccctg
    23581 cggagaggtt gatttcatta cccggaatga ccatcgcaat agataaaccg ccaacagagc
    23641 ttaagcagat tgccgccacc atcagcagta acatagccag tggatagtcg cgcccggggt
    23701 tgctcatttc attgacgtga gttgcggaag cttctacgcc catataactc aaaatgaagg
    23761 caacaaatac aaccagtgtg cccactttag agaagtcagg gaagaaggtc ttcgaatcca
    23821 tttcgatagc aacgggggca ccggagtgca gataaatagc cgctaatgcg atcaaaataa
    23881 atgcaggtaa caggataccg gcgaagaagc caactttagc aattcgcgcc gtgtatttcg
    23941 tgccaccaaa ctgcgttaat gccagcgccc aaagaatgat gagtgctgca atagttttgg
    24001 taatggggtc ttcattcagc gctggccatt tcaggatgta ggagagtgcc cctaacacga
    24061 aatagagcat cggaataaaa ccaatggcga tttgcagata gccaaatgag atcgctgcaa
    24121 atccccatct cggccccaga gtatttgata cccaggcgaa gacaccacct tcttcccagc
    24181 cgtcgacggt ggccatttcc gcagcacaaa gtcccacggg aataaaccat aaaatcccgc
    24241 ctaatagcag gaagaagact aatgaaaagc ccgatgttgc gaaggtaggg tattcataaa
    24301 cagccattac catcgatgcc gttatggcaa agaatccgag taatgtgagc tgcttagctt
    24361 tacctgtctg tactgatgta gccatattat ccccctaaaa cggtattcct gtcggaaccg
    24421 cacctgtttt gttctgaagc gtattcagaa caatattttc cgttgctaat gccagtgaac
    24481 agactttgga aattgtcccg aaacgggttc gtttcgggac accgttaccg ttaaacgtta
    24541 tcaggtatgt ttaaagctgt tctgctgggc aataccctgc agtttcgggt gatcgctgag
    24601 atatttcagg gaggctttgt agtcttccag caacagttca gcaaagtcca tttcgaagcc
    24661 gcgacgacac ataat
//
LOCUS       DAJVUP010000050        24336 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.050, whole genome shotgun sequence.
ACCESSION   DAJVUP010000050 DAJVUP010000000
VERSION     DAJVUP010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24336
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.050"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(36..1040)
                     /gene="ldtE"
                     /locus_tag="OQQ75_001826"
     CDS             complement(36..1040)
                     /gene="ldtE"
                     /locus_tag="OQQ75_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtE"
                     /protein_id="HCS1976188.1"
                     /translation="MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTV
                     QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNL
                     AELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLER
                     GIKLLPVVPAGPNNPLGRYALRFAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK
                     ALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQ
                     FKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRARQ
                     "
     gene            complement(1189..1605)
                     /gene="sufE"
                     /locus_tag="OQQ75_001827"
     CDS             complement(1189..1605)
                     /gene="sufE"
                     /locus_tag="OQQ75_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfuration protein SufE"
                     /protein_id="HCS1976189.1"
                     /translation="MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSP
                     QNSIQGCQNQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDV
                     RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS"
     gene            complement(1618..2838)
                     /gene="sufS"
                     /locus_tag="OQQ75_001828"
     CDS             complement(1618..2838)
                     /gene="sufS"
                     /locus_tag="OQQ75_001828"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase SufS"
                     /protein_id="HCS1976190.1"
                     /translation="MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEA
                     EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA
                     NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLHTL
                     FDEKTRLLAITHVSNVLGTENPLAGMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD
                     FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA
                     GTPNTGGIIGLGAALEYVSVLGLNNIAEYELNLMHYALSQLESVPNLTLYGPQNRLGV
                     IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD
                     RLVTGLQRIHRLLG"
     gene            complement(2835..4106)
                     /gene="sufD"
                     /locus_tag="OQQ75_001829"
     CDS             complement(2835..4106)
                     /gene="sufD"
                     /locus_tag="OQQ75_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCS1976191.1"
                     /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR
                     KHENWKYTSLEGLTNSQFVSIAGEISPQQRDALALTLDAVRLVFVDGRYVPALSDAIE
                     GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMYITQG
                     VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL
                     AFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP
                     VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN
                     LLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQMFYLRSRGINQQDAQQMIIYA
                     FAAELTEALRDEGLKQQVLARIGQRLPGGAR"
     gene            complement(4081..4827)
                     /gene="sufC"
                     /locus_tag="OQQ75_001830"
     CDS             complement(4081..4827)
                     /gene="sufC"
                     /locus_tag="OQQ75_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HCS1976192.1"
                     /translation="MLSIKDLHVSVEDKAILRGLSLAVRPGEVHAIMGPNGSGKSTLS
                     ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA
                     LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA
                     VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV
                     LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ"
     gene            complement(4837..6324)
                     /gene="sufB"
                     /locus_tag="OQQ75_001831"
     CDS             complement(4837..6324)
                     /gene="sufB"
                     /locus_tag="OQQ75_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416198.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HCS1976193.1"
                     /translation="MSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVR
                     AISAKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDT
                     CASEPGAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA
                     EQGIIFCSFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP
                     MELSTYFRINAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKN
                     AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL
                     RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKI
                     MPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ
                     RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG"
     gene            complement(6333..6701)
                     /gene="sufA"
                     /locus_tag="OQQ75_001832"
     CDS             complement(6333..6701)
                     /gene="sufA"
                     /locus_tag="OQQ75_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold SufA"
                     /protein_id="HCS1976194.1"
                     /translation="MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLG
                     VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQI
                     FKFHNPKAQNECGCGESFGV"
     gene            complement(7249..7437)
                     /locus_tag="OQQ75_001833"
     CDS             complement(7249..7437)
                     /locus_tag="OQQ75_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiH family protein"
                     /protein_id="HCS1976195.1"
                     /translation="MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTL
                     SSAELKEEIYFAWRLGVH"
     gene            complement(7537..7947)
                     /gene="menI"
                     /locus_tag="OQQ75_001834"
     CDS             complement(7537..7947)
                     /gene="menI"
                     /locus_tag="OQQ75_001834"
                     /EC_number="3.1.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
                     /protein_id="HCS1976196.1"
                     /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS
                     RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGIC
                     KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL"
     gene            complement(7944..11000)
                     /locus_tag="OQQ75_001835"
     CDS             complement(7944..11000)
                     /locus_tag="OQQ75_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HCS1976197.1"
                     /translation="MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTD
                     NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD
                     MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT
                     DASGQGSLVYGKTSDHVLGVRAVLLGGDVLDTQPLPVELAETLGKSNTTIGRIYNTVY
                     QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL
                     DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS
                     ELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCREL
                     AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY
                     GMFGHVDAGVLHVRPELDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY
                     SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI
                     AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR
                     GVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTL
                     CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR
                     KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTS
                     YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK
                     LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWY
                     FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE
                     LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK"
     gene            11389..12501
                     /gene="ydiK"
                     /locus_tag="OQQ75_001836"
     CDS             11389..12501
                     /gene="ydiK"
                     /locus_tag="OQQ75_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter YdiK"
                     /protein_id="HCS1976198.1"
                     /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV
                     VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS
                     GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI
                     GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV
                     VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT
                     WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL
                     AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK"
     gene            12687..12794
                     /gene="rprA"
                     /locus_tag="OQQ75_001837"
     ncRNA           12687..12794
                     /ncRNA_class="antisense_RNA"
                     /gene="rprA"
                     /locus_tag="OQQ75_001837"
                     /product="antisense sRNA RprA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00034"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00034"
     gene            12929..13308
                     /locus_tag="OQQ75_001838"
                     /pseudo
     CDS             12929..13308
                     /locus_tag="OQQ75_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001014786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdiL family protein"
     gene            13253..13975
                     /locus_tag="OQQ75_001839"
                     /pseudo
     CDS             13253..13975
                     /locus_tag="OQQ75_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310425.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            13987..14853
                     /gene="ydiB"
                     /locus_tag="OQQ75_001840"
                     /pseudo
     CDS             13987..14853
                     /gene="ydiB"
                     /locus_tag="OQQ75_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416207.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="quinate/shikimate dehydrogenase"
     gene            14885..15643
                     /gene="aroD"
                     /locus_tag="OQQ75_001841"
     CDS             14885..15643
                     /gene="aroD"
                     /locus_tag="OQQ75_001841"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HCS1976199.1"
                     /translation="MKTVTVKDLVIGTGAPKIIVSLMAKDIARVKSEALAYREADFDI
                     LEWRVDHFADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR
                     AAIDSGLVDMIDLELFTGDDQVKETVACAHAHDVKVVMSNHDFHKTPEAEEIIARLRK
                     MQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEV
                     FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA"
     gene            15789..17384
                     /locus_tag="OQQ75_001842"
     CDS             15789..17384
                     /locus_tag="OQQ75_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS1976200.1"
                     /translation="MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEAT
                     TLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRI
                     SELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKE
                     DLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNN
                     GGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD
                     DSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVET
                     GPIGGITSQGIAFGANVNTRAILDMTSQFNFYHGGGLDVCYLSFAEVDQHGNVGVHKF
                     NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEERVKKFIQELPEI
                     TFSGKIALERELDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPE
                     LKLMDERLFIDAAMGFVLPEAAH"
     gene            17398..18549
                     /locus_tag="OQQ75_001843"
     CDS             17398..18549
                     /locus_tag="OQQ75_001843"
                     /EC_number="1.3.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310429.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS1976201.1"
                     /translation="MDFSLTEEQELLLASIRELITTNFAEEYFRTCDQNGTYPREFMR
                     ALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSA
                     EQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAK
                     EYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEV
                     EESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH
                     NQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAI
                     QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK"
     gene            complement(18592..19503)
                     /locus_tag="OQQ75_001844"
     CDS             complement(18592..19503)
                     /locus_tag="OQQ75_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1976202.1"
                     /translation="MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNET
                     ELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQ
                     GAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAIL
                     YYENFKNAYRSEQGYIKKDVLIKDILFYLSNNYREKITLEQLSKKFRASVSYICHEFT
                     KEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPS
                     DYRRQFKNCFAEQEILSEFPQPVSLVG"
     gene            19817..20588
                     /locus_tag="OQQ75_001845"
                     /pseudo
     CDS             19817..20588
                     /locus_tag="OQQ75_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416212.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
     gene            20608..21546
                     /locus_tag="OQQ75_001846"
     CDS             20608..21546
                     /locus_tag="OQQ75_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HCS1976203.1"
                     /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV
                     MPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQL
                     NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
                     QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAA
                     VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVI
                     VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR"
     gene            21602..22891
                     /locus_tag="OQQ75_001847"
     CDS             21602..22891
                     /locus_tag="OQQ75_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1976204.1"
                     /translation="MSDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKN
                     MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS
                     YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
                     GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD
                     GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY
                     SAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA
                     KEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYSRMVADIMNEMF
                     TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL"
     gene            22888..23181
                     /locus_tag="OQQ75_001848"
     CDS             22888..23181
                     /locus_tag="OQQ75_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS1976205.1"
                     /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKA
                     CPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG"
     gene            23238..>24336
                     /locus_tag="OQQ75_001849"
     CDS             23238..>24336
                     /locus_tag="OQQ75_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310435.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HCS1976206.1"
                     /translation="MKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVV
                     DNHGATYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVS
                     VPLLPSWREAELVSVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL
                     APATSSLSLSPIIADNTSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASER
                     AYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQ
                     RCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVY
                     GSTESSPHAVVNLDDPLSRFMHTDGYAAAGVE"
BASE COUNT         5955 a         6229 c         6076 g         6076 t
ORIGIN      
        1 cattgtgcgc catttttttt gtctgctatt taccactact gcctcgcgcg taacatattc
       61 ccttgctctg gttcaccatt ctgcgctgac tctactgaag gcgcattgct ggctgcggga
      121 gttgctccac tgctcaccga aaccggatac cctgcccgac gatacaacgc tttatcgact
      181 aacttctgat ctacagcctt attgtcttta aattgcgtaa agcctgctgg cagtgtgtat
      241 ggcattgtct gaacgttctg ctgttcttct gccgatagtg gtcgatgtac ttcaacataa
      301 cgcatcccgt taggctccac ggaatatttc accggttcgt tgatcacttt caccggcgtt
      361 cccgtccgca cgctggagaa taaggcttta atatccggtg cattcatgcg aatacagccc
      421 gaactgacgc gtaaaccgac gctgtccggc gcactggtac catgaatgag gtattcgcca
      481 ttaccatgcg cgaagcgcag tgcgtaacgt cctagcgggt tatttggtcc ggcaggaacg
      541 actggcagta atttaatgcc acgctccagc gaacgttgac gaatgcctgc cgtaggcgtc
      601 caggttggat tagggatttt ctgccccaca cgcgtttcca tcaccggcgt ttccagcccc
      661 tgcaagccaa tacctatcgg ataaacctgc acgatatttt ctcccggcgg ataataataa
      721 aggcgcagct ctgcaaggtt aacgataatc ccctgacgcg gtgcatcagg taataacagt
      781 tgtgaaggaa tagttatcgt cgtaccaggt tttggcaccg gggcgatagt gttattggct
      841 tcaaggatca acattgccgc agtatcaaaa cgtcgggcaa tagcctgaag gtttttatcc
      901 ccttcttgca ccgtatacgt ttgattttgc ccaaccagtc ggcttccggt tggtggtagc
      961 ggataatcaa ccgcccaggc agcctggatg gcgctaaaag cgccgataag cgtgagtgta
     1021 agcaaagacg cgcgtttcat tgtaaacctc ctgtatttgc cggagactca cgctgaaacg
     1081 tcggatggcg cttatgttca cctgaaacca aaacactcct gtgcaggtca gtgtaaacat
     1141 tgaccatccg gcaatgtgag ccaaccggat gaaagctgtc cctttagttt agctaagtgc
     1201 agcggctttg gcgcgaattg cgcgaatcat cgcttccaga ccttgtgaac gagatggggt
     1261 gagatgttgg gtgagcgcca ttttttcaaa ccacggacgc acatcgaaat tgacaatatc
     1321 ctgcggcgtc atctgatcgt agagaataaa tacgaccgca ataagccctt tcacaatcgc
     1381 cgcatcgctg tcgccctgca attcaataat tccctgcgca ttctggcgca tgacaatcca
     1441 cacctgattc tggcagccct gaatgctatt ttgtgggctt cggtcttcgt cgcgtaattc
     1501 tggcagacgc tggcccagct caataatgta gagatatttc tcttcccagt tggcgcagcg
     1561 taaaaaatta cgcagcaatt tttctttatc cggcaataaa gccatagtgc ctccctgtta
     1621 tcccagcaga cggtgaatac gttgcaggcc ggtcaccaga cgatccactt cttcatgagt
     1681 gttatacatg gccagcgacg cccgacacat cgcagggacg ttgtaatagg ccattaatgg
     1741 catagcgcag tgatgtccgg tacgcacagc aatgccgtaa ttatcgagaa aactgccaac
     1801 atcataggcg tggtgtttac cgagattaaa agcaataacg ccaagcctgt tttgtgggcc
     1861 atagagagtg agattcggta cagattccag ctgtgatagc gcgtaatgca tcagattcag
     1921 ttcatactcg gctatgttat taagccccag caccgaaaca tattccagcg ccgcgccaag
     1981 accaatgatg cccccggtat tgggtgtacc ggcttcaaac cgccatggtg ctttggtcca
     2041 ggtagtgcct tcactcaggc tgacggtggc gatcatagaa ccgccccctt cccacggcgg
     2101 catctcctgc aacaaggctt ctttgacata aagaatgcca atcccggtgg ggccatacag
     2161 tttatgcccg gaaaacacgt aaaaatcgca atccagcgcc tgaacatcca ccggatgatg
     2221 catcaccgcc tgagcgccat ccaccagcac ttttgcgcca tgctggtgcg caagcgtgat
     2281 cattcccgcc agtggatttt ctgtgccaag cacgttggag acatgagtaa ttgccagcag
     2341 gcgagttttc tcatcaaaca gcgtatgcag cgtctccagt tgcagcgtac cgtcggggtt
     2401 gagagggatc acacgcagct ctgcgccaac gcgtgcgcaa agcatctgcc aggggacaat
     2461 gttagcgtgg tgctccatct gactgatgat gatgttatcg cccgcccgca cattgctgtt
     2521 gccccagcta ttggcgacca gattgatccc ttccgtcgtg ccgcggacga acaccagctc
     2581 ttccgccgaa cgggcattaa taaacagcga tgcccgcttg cgcacgttct ccattttctc
     2641 ggtcgcctgg gcgcttaagg tatgaatacc gcgatgcacc gccgcgtagc catgacgata
     2701 aaactcggcc tcggcgtcaa tcacctggct cggtttctgt gcactggcgg cgctgtcgag
     2761 ataagccagc ggcaaaccgt ttacctcacg cgaaagcacc ggaaagtcgg cccgcacttt
     2821 gtcgacggaa aaagtcatct tgcacctcct ggcagccgtt gaccgattcg ggccagcacc
     2881 tgctgtttaa gcccctcatc acgcagtgct tccgtcagtt cggcagcaaa ggcgtaaatg
     2941 atcatctgct gggcatcctg ctgattgatc ccgcgcgagc gcagatagaa catctgttca
     3001 tcatcaatac gccccaccgt cgcgccgtgg ctgcatttca catcatctgc atagatttcc
     3061 agctgcggtt tcgtatccac ttccgccagt ttgcccatca gcagattatt gttggtcatc
     3121 tgaccatccg ttttgatggc gtgctgcgcg acgttgatca aaccgttaaa taccgcgcgg
     3181 cctttgtcgc tgacgatagt tttgtgcaac tgtcggctgt tacaaaaacc tttattgtgt
     3241 tccagccagg tacgggtatc acacacctcg tttttcaccg gcatcgccag gctattgatc
     3301 cgcagcgtgc tgttttcgcc attgagttgc gtactggtgt tgtgtcgtaa cactgcgcca
     3361 cccagcagga aactatggct aaatgcggtg gcatcctcag ccagcaacaa atcgttatga
     3421 gcaaagtggt gactgagcgg gttttcaaac gccagcttga tatgctgcaa gtgggcgttc
     3481 gctgcgacat tgatagtgaa ccgtgccccg gtaaaatgac gagcatcatt aaggctgaca
     3541 aaatgttcga tcaccgttgc ttcggcacct tccgccagat ccagatgatg ccggtaatgg
     3601 gcagtgttca cctcttcacc tgccacgccc tgggtgatat acattaacag caatggcttt
     3661 gccggccgtt gaccgcgctt cacggcgata tgcgtcacgc tttgtgccag gctttccgtc
     3721 aaatgcagaa acacttccgc ctgaatagcg tcgggtaacc cctgacggtc gtcgttaatg
     3781 ctcacttcat atccgctgcc ttcaattgca tcgctcagcg cgggcacgta acgtccatcg
     3841 acaaacacca gccgcacggc gtctaacgtt aacgctaagg catcacgctg ctgtggggat
     3901 atctcccccg caatgctgac aaactggcta ttggtcagcc cttccagcga cgtatatttc
     3961 cagttttcat gtttacgtgt cggcagtccg gtacgcagca attgttgtaa atgctgctgt
     4021 gcttgcgggg agcgttttgt cccttcagct tcaaacaagt gatgccactg ttgcagcgcg
     4081 ttactgctgt tcggtaagcc agccataacc ctgctcctcc agttgtttga ccaacgtgaa
     4141 atcgccggat ttcacaattc gtccctgata tagcacatgg acgtaatcag gcttgatgta
     4201 gtcgagaatg cgttggtagt gcgtaacaat gatgaatgag cgcttgccat cacgcaggga
     4261 gttcacgcca tcggcgacca cttttaatgc gtcaatatcc agcccggagt ccgactcatc
     4321 aagaatgcat aactccggtt ccagcaccgc catttgcaaa atatcgttgc gctttttctc
     4381 gccgccggaa aaaccaacgt ttaccgaacg ggttaataaa tcttccggca tcttcaggag
     4441 agcgattttc tcttccatca aatcctgaaa atcaaagcgg tcgagcgttt cctggccgcg
     4501 atagctgcgc actgcattaa gtgccgtttg caggaaaaac tggttactga cgcctggaat
     4561 ctccaccgga tactggaagg ccataaagat gccttcgcct gcacgatctt ccggcgacag
     4621 tgcaagcaaa tctttgcctt tgaactcaac cgtgccgccc gtcacttcat aatcttcgcg
     4681 cccggcaagc gttgccgata aggtactttt gcccgaaccg tttggcccca taatggcgtg
     4741 aacttcgccg ggacgaacgg cgaggcttaa tccacgcagg atagctttat cttccacgct
     4801 gacgtgtaaa tctttaatac ttaacatgtt tattccttat ccgacgctgt gttcaagact
     4861 gatcgcgagg agtttttgtg cttcaacggc aaattccagc ggcagttctg agaacacgtc
     4921 tttgcagaaa ccgttaacaa tcatcgagat ggcgtcttct tcgctgatcc cgcgttgcag
     4981 gcagtaaaac agttgatctt caccaatacg tgatgtcgtt gcctcgtgct ccagttgtgc
     5041 gctgttattg cgacattcga catacgggaa ggtatgcgcc ccacaattag cgccaatcag
     5101 cattgagtcg cactgagtga aattgcgcgc attggttgcc gtcggcatga ttttcactaa
     5161 gccgcgataa ctgttctgac tatgtccggc agagatccct ttcgagataa tggtcgattt
     5221 ggtgttttta ccgatgtgga tcatcttggt gccggtatcc gcttgctgat gaccgctggt
     5281 cagcgccact gagtaaaact caccaatgga gttatcgccg cgcaaaatgc agctgggata
     5341 tttccacgta atcgcggacc cggtttctga ttgcgtccat gacattttgc tgttttcgcc
     5401 ttcgcacaaa gcacgcttgg tgacgaagtt gagaataccg ccggtgttgt tatcgccagg
     5461 gaaccagttt tgtaccgtgg aatatttcac ctcggcgttt ttatggatga tgacttccac
     5521 cactgccgcg tgtaactgat agctgtcacg caccggagcg gaacagcctt caatgtagct
     5581 gacgtagctg tcttcgtcgg ccaccagaat ggtgcgctca aactgcccgg ttttttccgc
     5641 gttaatgcga aaataggtgg aaagttccat cgggcagcgc acgcctttag gcacataaat
     5701 aaacgtaccg tcagaggcta ccgccgcatt aagcgcggca aagaagttgt cattccccgg
     5761 caccacggtg ccgagatatt tacgcaccag ttccgggtga tcgtggatcg cctcaccaaa
     5821 ggaacagaaa ataattccct gctccgccag tttttcgcga taagtagtgg caaccgaaac
     5881 agagtcgaaa atggcatcca ccgccacctc tttgccttcc cgcacgggaa cgcccaactg
     5941 ctcaaacgcc gcctccacct ctttacttaa aaaggcgttc gcgccagttt gctgcaccgc
     6001 gccaggttca gacgcgcaag tgtcgtcaca attaccgcac gatggtgctg agtagtagct
     6061 gtaatcctga taattcagct tgtcgtagtg cgctttcaac cagtgcggtt cttccatctc
     6121 cagccatgcg cgataggcgt ttagacgaaa ctccagcatc cactccggct cattacgctt
     6181 cgccgaaatt gcgcgcacca cctcttcgtt tatccccttt gccagctcat cggtggctaa
     6241 ctgggtgaag aatccttctt tataattcag cgggccgccg gtccaggttt tgacatcgtc
     6301 agttgcttca gtattacgag acatagtacc gcctataccc caaagctttc gccacagcca
     6361 cattcattct gggctttagg gttgtgaaat ttgaatatct gattaagtcc ttcacgaacg
     6421 aaatcgactt ccgtgccatc aataaacggc atcgcttgca gcgggacaaa cagcttcgcg
     6481 ccgtcgtgtt caaacagcag atcgtctttg tccggctcgc taacactgtc gagcacatag
     6541 ccaaagcccg cgcagcccgt ttgcttcacg cctaaacgca cgccgaccat acccggctgc
     6601 tttgccacca gctcacggat gtgtatcgcc gctgcgggtg tcagcgttaa gccttgccag
     6661 gcgaaatctt gtgggttaaa ggttcctgaa tgcatgtcca tcgatttacc tcacttcatc
     6721 gctttcagcg tataacagca tgttggtgat aatgattatc agttcaaccc agcaaacgca
     6781 ggggctttac cgtaaaacat gctttttgcc tgcttttaat aagcatagac cctgatgtgt
     6841 gggttaacag gcacgctaag aattagcgta tctcattgtt agataatggt tattatctaa
     6901 ggagcattaa ggctgtgatg aaaaagaaaa agttgtatta aaatgactat ttaagagata
     6961 ggtaaaaaag tgcagcgttc agaaataaga aaacccttaa gtctgtgcga cacaggctta
     7021 agggtttcta ccccatccgg cgcttatctc cggcactctc agtggcttag ctcttgaagg
     7081 ggcgataaga ataatctcat aaagctaacc cgccgtttta acacaaactg cgattagtat
     7141 tatttttgaa caatatcagg cggtagataa gcagtattaa gaaggtcatc gaacctggac
     7201 ggaggttaat ccaggtcgat ttggcgaact tgcggcatta agtcaggatc aatgcacgcc
     7261 cagacgccag gcaaagtaga tttcttcttt taattcagca gaagagagag taagcaggtc
     7321 agcaaattca agttctagtt gtttcagacg tttgagatat tgggcaggtg aaagattgct
     7381 ctggtcacgg cgtaaaaatt caatggccag ctgggtggga tcaagttgag tagacatagc
     7441 atcctcgctt ttagacaaga cgtgtacagt ataccaccgt ttactgtgca gataatgacc
     7501 aaaagcaata tgcgtcacac ttttctggtg acaacgtcac aaaatggcgg tcgtcaatcg
     7561 tgacgaacag cacaaacgcc ctttctcatc gaagatttca atctgccaga cctggtgacg
     7621 cgaaccgaga tgcaacggtt tacatatgcc gcgcacccgc ccttctcgtg ccgagcggac
     7681 gtgattagca ttgatttcca gaccaaccac tttttgctca ccttcggtac ataaataacc
     7741 ggcaacggaa ccgatacttt cggccagtac cacggatgct cctccatgca gcaacccgaa
     7801 aggctgcttt gtccgcgagt ctactggcat tgtcgcttca agggtgtcat caccaatatg
     7861 ttcaaagcga atatccagga accccaccat gtttccttca cccatagcat tcagtgcttc
     7921 cagggtgatt ttccgtttcc atatcattta ataatctcca gtaaagcctg cacaggatgg
     7981 cgtacccccg tgccttcaac ccgttttacc tggctacggc aggaatatcc ggtcgccaga
     8041 cagcggttac gcggcagtcg ctgcatagcc tgatgccagg ataactcata gatcccgagc
     8101 gaattttcat ggtttttcgc ttcatgtccg taagtccctg ccatgccgca gcaacccacg
     8161 ctgacatttt ccagtttcgc gccaaaacgg gcaaatatcg cggcccattg tgctggcgca
     8221 cccggcaagg cggtaacttc ggtacagtga ccaaagaaat accatgattc accgctgact
     8281 gtagccacag gctgtgactc aagtgcgctt gccagccatt cattcgccag taagacgtta
     8341 aactcgccac gctcctcgcc cagcgccagt ttatattcat cgcgataaca aagtaccagc
     8401 gccggatcga cgcccaccat tggcataccc agcttcgcca tacggttgag gaaatccgcc
     8461 gtctttttcg ccgtcttcgc aaaacgatta agaaaacctt taatatgctg ggctttgcca
     8521 tttggcgaaa atggcagtaa cacaggctgg aaacctaatt tttcgaccag acggacaaaa
     8581 tccgccacca cttgcgcatc gtaatagctg gtaaaggggt cctgcaccac caacactgtg
     8641 cgcgctttct gctctgcatt gagagattca agctgttcca gcgtcatgtt tgccgagcga
     8701 tgccccacca tttgttgttg tagcgagggg accgacagca gcggcaaatc aaccatgccg
     8761 atatgttttt ccgagagttt gcgcaccagc ggctggttaa tgaagaagtt aaaggttttc
     8821 ggcgcgcgtg ccatcagcgg cgcgtagctc tcgaccgtag cgacgaggtg gtcgcgcagc
     8881 gggcgtaaat aacgggtgtg atagagctgc agaaaacgag agcgaaactc cggcacatca
     8941 attttgatgg ggcacagggt cgaacacgct ttacaggcca gacagcccga catcgcctct
     9001 ttgacttcgt gtgagaagtc atattcgcct ttattcgcat gccagctatt gcgcgtgcgg
     9061 gcaattaacg tccgcaaact gacgccggat tcaggcagtt cttgttccag tttgagtgga
     9121 tcaacgccgc gatccgccaa caaacgcagc cattcacgca ccagcgttgc gcgccctttc
     9181 ggtgaatgaa tccggttctg ggtgatcttc atcgacggac acatcggact acgggcatca
     9241 aagttgaagc ataaaccgtt gccgttacac tccatcgcac cgcgccactg ctggcgtacc
     9301 gcaatgggga tctgccgatc gaatgtaccg cgcttcaccg cgtccacttt catcatcggc
     9361 gcatcgagac cttctggcgg gcaaatcttc cctgggttga gtcggttatg cgggtcaaat
     9421 gccgctttca ctttgcgcag ttctgcaaaa agttcctcac cgaaaaacgc cgggctgtat
     9481 tcagcgcgaa aacctttgcc gtgctcgccc cacaacaaac caccgtattt cgcagtcagc
     9541 gccaccacgt catcagagat ttgcttcatc aaaatctctt gttgaggatc gcacatatcc
     9601 agctctggac ggacgtgcaa gacacctgcg tcgacgtgac cgaacatacc gtagcttaag
     9661 ccgtggctgt cgagcagcgc gcgaaattca gcaatataat ccgccaggtg ttccggcggt
     9721 acgcaggtat cctcagcaaa cggaattggc ttagcggcac ctttggcatt gccaagcaga
     9781 ccaacggctt ttttgcgcat tgcatagata cgttcaaccc ccgccagctc acggcacacc
     9841 tgccagccga tgacacctgc ttgatgactg gcgatcagct catccaaccg cgcacagagt
     9901 gcatttaccc gctcatcaat cagcgcctca tcatcaccag caaattccac aatgttcagc
     9961 ccgagcatct cttggtcagg cacatcggta atcaactcgc tgacggaatg ccagacaata
    10021 tcttcccgcg ccagattcag cacttttgag tccaccgtct ctaccgaaag cgcccgcgcc
    10081 tcaaccataa acggcgcgtt acgcagcgca gagtcaaaag agtcatattt gacgttcacc
    10141 agacggcgca ctttaggcaa gcgcgtaata tccagccgcg cttcggtaat aaaggccagc
    10201 gtcccttctg aacccgtcag aatgcgcgtc aggtcgaact cggtcatctc atcgttaaag
    10261 acatgacgca gatcgtaacc ggtaagaaag cggttaagtt tggggaagtt gtcgataatt
    10321 aactggcgtt gctgacggca acgttgataa accgtgttat aaattcgccc gattgtggta
    10381 ttggatttac ccagcgtttc cgccaattcg acgggtaaag gttgcgtatc gagaacatcg
    10441 ccccccaaca acaccgcgcg tacgccaagt acgtgatctg acgttttgcc atagaccagc
    10501 gatccctgac cggatgcatc ggtattgatc atcccaccga gcgttgcccg gttgctggtc
    10561 gaaagttccg gcgcaaaaaa gtagccgaac ggtttcaggt actgattgag ttgatctttt
    10621 atcaccccgg cctcaacgcg cacccagccc tcttcagggt taatttcgat gatgcggttc
    10681 atatggcggg acatatcaac aataatcccc tggttgagcg cctgaccgtt agtgccggtg
    10741 ccgccgccgc ggggggtaaa gatcagcgat gaatagcgtt cctgcgcggc aagacgggcg
    10801 atcagcgcca catctgcggt tgaacgcgga aataccaccg catcggggag aagttggtaa
    10861 atactgttgt cggtcgacat tgtcagacga tcggcataac ttgtcgccgt atcgccggta
    10921 aaaccttgtt gctccagctc ttgcaaaaaa ttaagcacca gttgaacgac gccgggtgcc
    10981 tgagaaatct gtggaatcat tatattgccc ctttcctgcg gtctgtgatg taggtcgata
    11041 cactattctt tcaggcggct gcaatagcgc actgaaaggt gatgtttatt tactctatgg
    11101 atttcgagtt gcaggaaggc ggcaagcgag tgaactccag gagcttacaa tagtaagtga
    11161 ctggggtgaa cgaacgtagc cgcagcacat gcaacttgaa atacgacgag taaatcgttt
    11221 gcgtgttgcc tgagttgttg taccacattt ttttctaaca cgcccatcag aattaagggc
    11281 agaatcggcc tgttaaaaac cgctgaaatt gctcatcatt atgcaggtga gtttcgcgtg
    11341 ttcacgtcgc gtcgacgatt tgacgcacaa aaaaggtgaa aagtagttat ggtaaatgtt
    11401 cgtcagccca gggatgtcgc acaaattctg ctttcggtgc tgtttttagc catcatgatt
    11461 gtggcatgtc tgtggattgt tcaacccttt attctcggct ttgcatgggc cggtacggtg
    11521 gttatcgcca cctggccggt attgttacgt ttgcaaaaga tcatgtttgg ccgccgctct
    11581 ctcgccgttc tggtgatgac gctgttatta gtgatggtgt ttatcatccc tattgctttg
    11641 ctggttaaca gtatcgtcga cggcagcggc ccgctaatta aagccatttc cagcggcgac
    11701 atgacgttac ccgatctggc gtggcttaat accattccgg tgattggcgc gaagctgtat
    11761 gcaggctggc acaacttgct ggatatgggg gggacggcga tcatggcgaa agtccgccct
    11821 tatattggca ccaccaccac ctggttcgtt gggcaggcgg cgcatatcgg gcgctttatg
    11881 gtgcattgtg cgctgatgct tctcttcagt gccctgctgt actggcgcgg tgaacaggtg
    11941 gcacaaggca ttcgccattt tgcaacccgt ctggcaggcg ttcgcggaga tgccgccgta
    12001 ctgctggcgg cacaggctat ccgcgcggtg gcgctgggtg tggtggtgac ggcgttagta
    12061 caggcagtgc ttggcggtat cggcctcgcc gtatccggcg taccttatgc aacgttgcta
    12121 acggtgttaa tgatcctctc ctgccttgtc cagcttggcc cgttgccggt actgattccg
    12181 gcgattatct ggctctactg gactggcgat accacctggg gaacggtatt gttagtgtgg
    12241 agcggtgtgg ttggcacgct ggataacgtc atccgcccaa tgttaattcg catgggtgcc
    12301 gatttaccgc tgatcctgat cctctctggt gttattggtg gtttgattgc tttcgggatg
    12361 atcggtctgt ttattggtcc ggttctgtta gccgtttcct ggcgtctgtt tgccgcgtgg
    12421 gtggaagaag tcccgccgcc gacggaccaa ccggaagaaa ttctcgaaga acttggcgaa
    12481 atcgagaaac cgaataagta atttctcatc aggcggctct gccgcctgat tgttaacccc
    12541 cgctaattga tatttgcttg ctcttcccca tattttcctg cttaccgcca ttcagctggt
    12601 agtacctgtc gcaaattctt tacagttttt aaactaatga gacgaatctg atcgacgcaa
    12661 aaagtccgta tgcctactat tagctcacgg ttataaatca acatattgat ttataagcat
    12721 ggaaatcccc tgagtgaaac aacgaattgc tgtgtgtagt ctttgcccat ctcccacgat
    12781 gggctttttt taacattttt ccacttcgct acctcgcccc tcactctttc caataatgtt
    12841 gcacaagata ctgtgactct cttcaagccg tcagcaggct gataatgtta tttatatttt
    12901 attgtttatt tcatgcagcc attacacgat gaacgcttat gaactccagg cactccgaca
    12961 tatttttgcc atgactattg atgaatgcgc acctggattg cccagaccgg tgacagtgaa
    13021 agctggcgtc agtgggaaaa tggcaagtgt gccattcctg atcgtgtagt cgagcaactg
    13081 ttggctatgc gtcagcaaag aaaaaaacat cttcatgcca tcatagagaa aataaataac
    13141 cgcatcggca acaacaccat gcgttttttc cccgacttaa ccgcatttca acgagtctac
    13201 cctgatggca attttattga ctggaagatc tatcaatcgg tagccgctga aggtaatgct
    13261 gttgaaaagc aaattcccca gccagttggt ggacgccagc gtagctaatg aattaccgca
    13321 aatgaacagc aaaccgttag tctggctgga aggtgtttca tcggtactgt tcggtgtagc
    13381 cgcattctcg accttttatg tgattgtggt gtggatgccc aaatatgcga tggcttttgc
    13441 tggtatgtca gaagctgagg cattaaaaac catctcttat tacagtatgg gctcgttggt
    13501 ctgtgtcttt atttttgccg cactactgaa aaaaatggtc cggcccatct gggctaatgt
    13561 atttaactct gcactggcaa caataacagc agccattatc tatctgtacc cttctccact
    13621 ggtgtgtaat gccggcgcct ttgttatcgg tttctcagca gctggcggca ttttacagct
    13681 cggtgtttcg gtcatgtcag agtttttccc aaaaagcaaa gccaaagtca ccagtattta
    13741 tatgatgatg ggtggactgg ctaactttgt tattccgctg attaccggtt atctgtcgaa
    13801 catcggcctt caatatatca ttgttctcga ttttactttc gcgctgctgg ccctgattac
    13861 cgcaattatt gtttttatcc gctattaccg cgtttttatt attcctgaga atgatgtgcg
    13921 gtttggcgag cgtaaattta gcacccggtt aaacacaatt aagcatagag gttaaaggag
    13981 ttaattatgg atgttaccgc aaaatacgaa ttgattgggc tgatggccta tcctatccgc
    14041 cacagtttat cgcctgaaat gcagaataaa gccttagaaa aagcgggatt gccatttacc
    14101 tatatggcct ttgaagtgga taacgatagt tttcccggag caattgaagg attaaaagct
    14161 ctaaaaatgc gcggaactgg tgtatcaatg ccgaacaaac aactggcttg ttaatatgtt
    14221 gatgaattaa cgccagcagc caaactggtg ggtgccatca acaccatcgt taatgatgat
    14281 ggctacctgc gcggctataa caccgacggc acgggccata ttcgcgccat taaagagagc
    14341 ggttttgata tcaaaggcaa aacaatggtg ctgttagggg ccggaggtgc ctcaacggct
    14401 attggcgcgc agggggcaat tgaaggttta aaagaaatta aactctttaa ccgtcgggat
    14461 gagttcttcg ataaagccct cgccttcgcg cagcgggtta acgaaaacac cgattgtgtc
    14521 gtcacggtta ccgatctcgc cgatcagcaa gcctttgctg aagccctggc ttccgccgac
    14581 attttaacca atggcacaaa agtgggtatg aaaccccttg agaatgaatc attagttaat
    14641 gatatcagtc tgttacatcc gggacttctg gtcactgaat gcgtgtataa cccgcatatg
    14701 acgaagttat tgcagcaggc gcaacaagct ggttgcaaaa cgattgatgg atacggcatg
    14761 ttgttgtggc aaggggctga acagttcacg ttatggactg gcaaagattt ccctctggaa
    14821 tatgttaaac aggtcatggg gttcggtgcc tgacaggctg accgcgtgca gaaagggtaa
    14881 aaaaatgaaa accgtaactg taaaagatct cgtcattggt acgggcgcac ctaaaatcat
    14941 cgtctcgctg atggcgaaag atatcgcccg cgtgaaatcc gaagctctcg cctatcgtga
    15001 agcggacttt gatattctgg aatggcgtgt ggaccacttt gccgacctct ccaatgtgga
    15061 gtctgtcatg gcggcggcaa aaattctccg cgaaaccatg ccagaaaaac cgctgctgtt
    15121 taccttccgc agtgccaaag aaggcggcga gcaggcgatt tccaccgagg cttatattgc
    15181 tctcaatcgt gcagccatcg acagcggcct ggttgatatg atagatctgg agttatttac
    15241 cggcgatgat caggttaaag aaaccgtcgc ctgcgcccac gcgcatgatg tgaaagttgt
    15301 catgtccaac catgacttcc ataaaacgcc ggaagccgaa gaaatcattg cccgtctgcg
    15361 caaaatgcag tccttcgacg ccgatattcc taagattgcg ctgatgccgc aaagtaccag
    15421 cgatgtgctg acgttgcttg ccgcgaccct ggagatgcag gagcagtatg ccgatcgtcc
    15481 aatcatcaca atgtcaatgg caaaaactgg cgtaatttct cgtctggctg gtgaagtatt
    15541 tggctcggcg gcaacttttg gtgcggtaaa aaaagcctct gcgccagggc aaatctcggt
    15601 aaatgattta cgcacagtat taactatttt acatcaggca taagcaataa tatttcggcg
    15661 ggaatatcct cccccgccga actaaaaaaa atatattcaa ccgtatttaa taaaaatatt
    15721 tcgtgagtct ctgtgcgcta aatatccatc tggcgtaggg aaaatcacac ctgaatcaga
    15781 aattaacaat gaaacctgta aaaccacctc gtattaatgg acgagtgccg gtcctgtcgg
    15841 cacaggaagc ggtgaattat attcccgacg aagcaacact ttgtgtgtta ggcgctggcg
    15901 gcggtattct ggaagccacg acgttaatta ctgctcttgc tgataaatat aaacagactc
    15961 aaacgccacg taatttatcg attattagtc caacagggct tggcgatcgc gccgaccgtg
    16021 gtattagtcc gctggcgcaa gaaggtctgg tgaaatgggc attatgtggt cactggggac
    16081 aatcgccgcg tatttctgaa ctcgcagaac aaaataaaat tattgcttat aactatccac
    16141 aaggtgtact tacacaaacc ttacgcgccg ccgcagccca ccagcctggt attattagtg
    16201 atattggcat cgggacattt gtcgatccac gccagcaagg cggcaaactg aatgaagtca
    16261 cgaaagaaga cctgattaaa ctggtcgagt ttgataacaa agaatatctc tattacaaag
    16321 cgattgcgcc agatatcgcc ttcattcgcg ctaccacctg cgacagtgaa ggctacgcca
    16381 cttttgaaga tgaggtgatg tatctcgacg cattggttat tgcccaggcg gtgcacaata
    16441 acggcggtat tgtgatgatg caggtgcaga aaatggttaa gaaagccacg ctgcatccta
    16501 aatctgtccg tattccgggt tatctggtgg atattgtggt ggtcgatccg gatcaaagcc
    16561 aactgtatgg cggtgcgccg gttaaccgct ttatttctgg tgacttcacc cttgatgaca
    16621 gcaccaaact tagcctgccc ctaaaccaac gtaaattagt tgcgaggcgt gcattattcg
    16681 aaatgcgtaa aggcgcggtg gggaatgtcg gcgtcggtat tgctgacggt attggcctgg
    16741 tcgcccggga agaaggttgt gctgatgact ttattctgac ggtagaaaca ggtccgattg
    16801 gcggaattac ttcacagggg atcgcctttg gcgcgaacgt gaatacccgt gccattctgg
    16861 atatgacgtc ccagtttaat ttttatcacg gtggtggtct ggatgtttgt tatttgagtt
    16921 ttgctgaagt cgaccagcac ggtaacgtcg gcgtgcataa attcaatggc aaaatcatgg
    16981 gtaccggtgg atttattgat atcagtgcca cctcgaagaa aattattttc tgcggcacgt
    17041 taaccgcggg cagtttaaaa acagaaattg ccgatggcaa attaaatatc gtccaggaag
    17101 aacgggtgaa gaaatttatt caggaactac cggaaattac ttttagcgga aaaatcgcgc
    17161 tcgaacggga actggatgtt cgttacatca ccgaacgtgc tgtattcacg ctgaaagaag
    17221 acggcctgca tttaatcgaa atcgcccctg gcgtcgattt acaaaaagat attctcgaca
    17281 aaatggattt caccccagtg atttcgccag aactcaaact gatggacgaa agattattta
    17341 tcgatgcggc gatgggtttt gtcctgcctg aagcggctca ttaacaggag tatcacgatg
    17401 gatttttctt taactgaaga acaagaactg ctgctggcca gtattcgcga actgattacg
    17461 actaactttg cggaagagta tttccgcacc tgcgatcaaa acgggacata tccgcgtgag
    17521 tttatgcggg cgctggcgga taacggcatt tctatgcttg gcgtgccgga agagttcggt
    17581 ggcatccctg cggattacgt cacccagatg ctggcgctga tggaagtgtc aaaatgcggt
    17641 gctccggcat ttttgattac caacggtcaa tgtattcaca gtatgcgccg tttcggttct
    17701 gcagagcagc tacgtaaaac ggcagagagc accctggaaa cgggtgatcc cgcctatgcc
    17761 ctggcgttga cggagccagg cgcaggctca gacaacaaca gtgccactac cacttacacg
    17821 cgtaaaaacg gcaaggttta catcaacgga cagaaaacct ttattaccgg tgcgaaagag
    17881 tacccgtata tgctggtgtt ggcgcgcgat ccgcaaccga aagatcccaa aaaagccttc
    17941 accctgtggt gggtcgactc cagtaagccc ggcattaaga ttaacccgct gcataaaatc
    18001 ggctggcata tgctcagcac ctgcgaagtc tatctcgaca acgtggaggt tgaagagagc
    18061 gacatggtgg gcgaagaagg aatgggtttc ctcaatgtga tgtacaactt tgagatggag
    18121 cgcctgatca acgccgcgcg cagcaccggc tttgccgaat gcgcctttga agatgccgcc
    18181 cgctatgcca accaacgtat cgcttttggt aagcccattg gtcataacca gatgatccag
    18241 gaaaaactgg cgctgatggc gattaagatc gacaacatgc gcaacatggt gctgaaagtg
    18301 gcatggcaag ccgatcagca tcagtcactg cgcaccagcg cggcgctggc aaaactgtat
    18361 tgcgcacgta ccgcaatgga agtcattgat gatgcgattc aaatcatggg cggtctgggc
    18421 tataccgatg aagcgcgcgt ctcccgcttc tggcgtgatg tccgttgtga acgtatcggc
    18481 ggcggtacag acgaaattat gatttacgta gcaggtcggc agatcctgaa agactatcag
    18541 aacaaataat ctgcaggcgg cgcagcttct taacaaactg cgccgccaga tttatccaac
    18601 aagacttacc ggttgaggaa attcagatag gatttcttgt tccgcaaaac agtttttaaa
    18661 ttgtctacgg taatcgctgg gcgaacaacc gacatggcgc aaaaacagtt tggcaaagtg
    18721 atcgacattt tcataaccca cacgccagga gatctctgcc tgtgataatt cagtattagt
    18781 gagtgaccat tttgcttccg tcatacgccg ttgaataaca tagttaatag gggaaatacg
    18841 atactctttg gtaaattcat ggcaaatata actgacgctg gcacgaaatt ttttcgataa
    18901 ctgttctaaa gtgatttttt cgcgataatt attactcaga tagaaaagaa tatcttttat
    18961 cagaacatct tttttaatat acccctgctc cgaacgataa gcatttttaa aattttcgta
    19021 gtaaagaatg gctaacgtat aggcaaatgc atcccataac gaagatgttt ggctattttt
    19081 actttgcggc aaaatcacac ttagctcatt aaataaggtt tttatgactt cttttccctg
    19141 ccccgcggca attaccggac aagaatgcgg ttgcagtagc tgattttcct cagccccctg
    19201 aaactgaaag ccgtacagcg cacaggtaca cgtcgttgcc ggatcgttaa cgtcagaggc
    19261 caccgcatgc agcctgccgc gttctatcac cacaatgtca tccgcatgtg cgacatataa
    19321 cgaagaatcg atggtaaacc ttgcaacccc tttcttgacg taaatcaact cggtttcatt
    19381 gtcatgaacg tgatgtccgg actcccattt tggatcatcg ctaaatgcaa aacgtgaaag
    19441 ccgtggcgtt ttaccggcga caaacagcgt ttcactggcg ttatcaaaac agcgttgata
    19501 catgacaacc tccctattcc atgagcaagc aaaaacaata tatgccggat aaaatacggc
    19561 gtgtattgcg gttatacaac cgcgtttagc gagagctaaa caagattatt tacactgaat
    19621 gcaagattgt acggtcatgg aataactata ttgccgcaaa ttgcactttt gttttagcga
    19681 tcgcattttt ttgcaagatt gttggcaagg aaaacagctt gctccgtcga aaacccccac
    19741 cgctatcgca cactattttc aggccatttt taccttccat cggagatggt tccgtatgcg
    19801 actcacagga gaaatcatga aaataataac ctgctttaag ctggtgcctg aagaacagga
    19861 cattgttgtc actccagaat acaccctgaa tttcgacaat gccgacgcca aaatcagcca
    19921 gttcgatctc aatgccattg aagctgcaag ccagctcgca acagatgacg atgagatagc
    19981 cgcgctgacc gttggcggct cattgttgca gaactcgaaa gtgcgcagtg cgcaaagatg
    20041 tgctatcccg cgggccgcac agcctgtatt tggtgcagga tgcgcaactt gaacatgcac
    20101 tgcctctcga taccgcaaaa gcgctggcgg cagcaattga aaagatcggc ttcgatttac
    20161 tgatctttgg tgaaggttcc ggcgaccttt atgcccagca ggttggcttg ctggtcggag
    20221 aaattctgca acttccggtg attaatgcag tgagtgctat tcagcgtcag ggtaatacac
    20281 tggtgattga acgcacgctt gaagatgatg ttgaagttat tgaactctct gttccagccg
    20341 tgctctgcgt cacctccgat attaacgtgc cacgcattcc ttcgatgaaa gccattctcg
    20401 gcgcgggtaa aaaaccggta aatcagtggc aggcaagtga tattgactgg agccagagcg
    20461 cgccacttgc tgaactggtc ggcattcgcg taccgccgca aacagaacgt aagcacatca
    20521 ttatcgataa cgattcgccg gaggccattg ccgagctggc ggaacatctg aagaaagccc
    20581 tgaactgaag cctacggaga agaaacgatg agtcaattaa acagcgtctg ggtctttagc
    20641 gataatcctg aacgttatgc tgaactgttt ggcggcgctc agcaatgggg ccaacaggtg
    20701 tatgccattg tacaaaatac cgaccaggcg caggcagtta tgccttatgg tccaaaatgt
    20761 atttatgttc ttgagcaaaa cgacgcgctg caacgcactg aaaattacgc cgaaagcatt
    20821 gctgccccgc tgaaagataa acaccccgct atgttgctgt tggccgcgac gaaacgtggt
    20881 aaagctctgg cagcacggtt aagtgtgcaa ctgaatgcgg cgctggtgaa cgatgccacg
    20941 gcggtggata ttgtcgatgg tcacatttgc gccgaacacc ggatgtatgg cgggttagcg
    21001 ttcgctcagg aaaagatcaa cagcccgctg gcgatcatta cccttgcacc cggtgttcag
    21061 gaaccgtgca ccagtgatac ctctcatcag tgcccgacag aaacggtacc ttatgttgct
    21121 ccgcgtcatg aaattctctg tcgcgaacgc cgtgcgaaag ccgcaagcag cgtggacctg
    21181 agcaaagcaa aacgtgtggt tggcgtcggt cgtggtctgg cggcgcagga tgacctgaaa
    21241 atggtccacg aactggcggc ggtgctgaat gctgaagtcg gctgttcacg tccaattgcc
    21301 gaaggcgaga actggatgga gcgtgaacgt tatatcggtg tctccggcgt gttgctgaaa
    21361 tccgatctct acctgacgct ggggatctcc gggcagatcc agcatatggt tggcggcaac
    21421 ggcgcaaaag tgattgtcgc catcaataaa gataaaaatg cgccaatctt caattatgcc
    21481 gactacggtc tggtgggcga tatctacaaa gtcgtccctg ccctgattag ccagttgagc
    21541 cgctaattcc cctttcaacc acatctcccg ctgtaaaggc agcgggaagg gagcataacg
    21601 catgtcggat gacaaatttg atgccattgt ggtcggtgcg gacgttgcta gtagcgttgc
    21661 cgcactggtc atggcgcgag ccggactgga tgtcctggtg atagaacgcg gcgacagtgc
    21721 cggatgtaaa aacatgaccg gcgggcgtct ttatgcccac acacttgaag caatcattcc
    21781 aggctttgca gtatcagcgc cggtagaacg caaggtcaca cgcgagaaaa tctccttctt
    21841 aaccgaagaa agcgccgtta ccctcgattt tcaccgcgag caaccagatg ttccgcaaca
    21901 cgcatcttat accgtattgc gtaatcgtct ggacccgtgg ttgatggaac aagccgagca
    21961 ggcgggcgca cagtttatcc cgggcgttcg cgtcgatgcg ttggttcgtg aaggaaacaa
    22021 ggtcactggc gtgcaggccg gggatgatat tctccaagcg aatgtggtgg ttctagctga
    22081 tggcgtaaac tcgatgcttg gccgctcgct gggaatggtt cccgcttccg atccgcatca
    22141 ttacgctgtt ggtgttaaag aggttattgg cctcacacca gaacagatca acgatcgctt
    22201 taatattacg ggcgaggaag gtgccgcctg gctgtttgcc ggctcccctt ctgacggcct
    22261 gatgggcggg ggatttctct ataccaacaa ggattccata tccttggggc tggtttgtgg
    22321 attgggtgat atcgcccatg cgcaaaaaag cgtgccgcaa atgctggaag attttaaaca
    22381 acaccccgcc attcgcccac taattagcgg cggcaaactg cttgaatatt ccgcgcatat
    22441 ggtgccagaa ggcggtctgg caatggtgcc gcagatggtt aacgatggcg tgatgatcgt
    22501 tggtgacgcc gcaggcttct gcctgaattt gggttttaca gttcgtggca tggatttagc
    22561 cattgcatcg gctcaggctg ccgccacaac ggtgatcgcc gccaaagaac gcgaggattt
    22621 ctccgccagc agtctggcgc aatacaaacg tgagctggaa caaagctgcg tcatgcgcga
    22681 tatgcagcat ttccgcaaga tcccggcgct gatggaaaac ccgcgcctgt ttagccaata
    22741 ctcacgaatg gtcgccgaca tcatgaacga gatgttcacc attgacggca aaccaaacca
    22801 gccggtacgc aaaatgatca tgggacacgc gaagaaaatt gggctgatca acttgctgaa
    22861 agatggcatt aagggagcaa ccgcgctatg agccagaacg ctacggttaa cgtcgacatc
    22921 aaattaggcg tcaataaatt ccatgttgat gagggccacc cgcatatcat tctggcggca
    22981 aatcccgata tcaatgaatt ccgtaaatta atgaaagctt gccctgccgg actttataag
    23041 caggatgacg ccggcaacat tcatttcgat tccgccggtt gtctggagtg cggcacctgt
    23101 cgggtgctgt gcggcaacac tattctcgaa cagtggcaat atcccgcagg caccttcggt
    23161 attgattttc gctacggcta atcatgcatc ccacaggccc gcatctcggg cctgatgttc
    23221 tgtttcgaga gtccaaaatg aaagtgacat taacgttcaa cgaacaacgt cgtgcggcgt
    23281 atcgtcagca agggttatgg ggcgatgctt cactggccga ttactggcag cagaccgctc
    23341 gtgcgatgcc agacaaaatt gccgtggtcg acaatcatgg tgcaacgtac acctatagcg
    23401 cgctcgatca cgccgcgagc tgtctggcaa actggatgtt agcgaagggt attgaatcag
    23461 gcgatcgcat cgcatttcaa ctgcctggct ggtgtgaatt taccgttatc tatcttgcct
    23521 gcctgaaaat cggtgcggtt tccgtgccgc tgttgccttc ctggcgggaa gcagaactgg
    23581 tgtcggtgct caataagtgt caggcaaaaa tgttctttgc accgacgttg tttaaacaaa
    23641 cacgtccggt agatttaatc ctgccgctgc aaaatcagct tccacaacta caacaaattg
    23701 tcggcgtgga caaactggct cccgccacct cttccctctc attaagtccg attatcgccg
    23761 acaatacctc actgaccacg gcgataacga cccacggcga tgaattagct gcggtgctgt
    23821 ttacctccgg aaccgagggt ctgccaaagg gcgtgatgct aacgcataac aatattctcg
    23881 ccagtgagcg ggcttattgc gcgcgactga atctgacctg gcaggatgtc tttatgatgc
    23941 ctgcgccact tggtcacgca acgggctttc tgcatggcgt aacggcacca ttcttaattg
    24001 gcgctcgcag cgtgttgtta gatattttca ctcctgatgc gtgtctcgcg ctgcttgagc
    24061 agcagcgttg cacctgtatg ctaggcgcaa cgccgtttgt ctatgatctt ttgaatgtac
    24121 tagagaaaca acccgcggac ctttcagcgc tgcgtttctt tctttgcggc ggtaccacaa
    24181 tccccaaaaa agtggcacgt gaatgccagc agcgcggcat taaattatta agtgtttatg
    24241 gttccacaga aagttcgccg catgcggtgg tgaatctcga tgatcctttg tcgcgcttta
    24301 tgcacaccga tggttacgct gccgcaggtg tagaga
//
LOCUS       DAJVUP010000051        24061 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.051, whole genome shotgun sequence.
ACCESSION   DAJVUP010000051 DAJVUP010000000
VERSION     DAJVUP010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24061
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.051"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            324..551
                     /gene="feoA"
                     /locus_tag="OQQ75_001850"
     CDS             324..551
                     /gene="feoA"
                     /locus_tag="OQQ75_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter A"
                     /protein_id="HCS1976207.1"
                     /translation="MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAP
                     LGDPIHIETRRVSLVLRKKDLALLEVEAVSC"
     gene            568..2889
                     /gene="feoB"
                     /locus_tag="OQQ75_001851"
     CDS             568..2889
                     /gene="feoB"
                     /locus_tag="OQQ75_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HCS1976208.1"
                     /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ
                     FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL
                     YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK
                     LAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAY
                     AGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDK
                     IVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDW
                     LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK
                     SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN
                     GALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRL
                     KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED
                     NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAIDETWQSL
                     KDTFSLSVLMNPIEASKGNGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG
                     AIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVVIG
                     LLRRARSRVDIELLATRKSVSSCCAASTTGDCH"
     gene            2889..3125
                     /gene="feoC"
                     /locus_tag="OQQ75_001852"
     CDS             2889..3125
                     /gene="feoC"
                     /locus_tag="OQQ75_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[Fe-S]-dependent transcriptional repressor FeoC"
                     /protein_id="HCS1976209.1"
                     /translation="MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG
                     KAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR"
     gene            3328..4206
                     /gene="rpnA"
                     /locus_tag="OQQ75_001853"
     CDS             3328..4206
                     /gene="rpnA"
                     /locus_tag="OQQ75_001853"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnA"
                     /protein_id="HCS1976210.1"
                     /translation="MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKT
                     LKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAA
                     MQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT
                     VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMGCLLSSGYANDRQIKGLFNYILQ
                     TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLTDI
                     MRFTGVSEEELAAASQ"
     gene            complement(4235..5005)
                     /gene="bioH"
                     /locus_tag="OQQ75_001854"
     CDS             complement(4235..5005)
                     /gene="bioH"
                     /locus_tag="OQQ75_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709189.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HCS1976211.1"
                     /translation="MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHL
                     VDLPGFGRSQGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL
                     VTVASSPCFSARDDWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARA
                     LKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVPMPFLRLYGYLDGLVPRKVVPML
                     DKLWPRSKSYIFAKAAHAPFISHPVEFCHLLVALKQRV"
     gene            5043..5726
                     /gene="gntX"
                     /locus_tag="OQQ75_001855"
     CDS             5043..5726
                     /gene="gntX"
                     /locus_tag="OQQ75_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417872.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein GntX"
                     /protein_id="HCS1976212.1"
                     /translation="MLTVPGLCWLCRMPLALGHWGICSVCSRAARTDKTLCPQCGLPA
                     THSHLPCGRCLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVL
                     HARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHCRWDSEAVTRTRAT
                     ATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAATV
                     QVWCLCRTL"
     gene            5785..6360
                     /gene="nfuA"
                     /locus_tag="OQQ75_001856"
     CDS             5785..6360
                     /gene="nfuA"
                     /locus_tag="OQQ75_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016942932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HCS1976213.1"
                     /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC
                     PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA
                     DDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK
                     EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY"
     gene            6721..8037
                     /gene="gntT"
                     /locus_tag="OQQ75_001857"
     CDS             6721..8037
                     /gene="gntT"
                     /locus_tag="OQQ75_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1976214.1"
                     /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD
                     KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV
                     LTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGP
                     TAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEE
                     MPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT
                     FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNI
                     SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH
                     VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI"
     gene            complement(8082..10166)
                     /gene="malQ"
                     /locus_tag="OQQ75_001858"
     CDS             complement(8082..10166)
                     /gene="malQ"
                     /locus_tag="OQQ75_001858"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HCS1976215.1"
                     /translation="MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQR
                     TATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPT
                     KLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWG
                     IGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNA
                     VEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDE
                     QMTAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFC
                     EEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDREL
                     YCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHV
                     MSMLRLWWIPYGETADQGAYVHYPVDDLLSILALESKRHRCMVIGEDLGTVPVEIVGK
                     LRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWESGDLTLGKT
                     LGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRY
                     IADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLETMFADDGVNKLLKD
                     LDRRRRAAAKKQ"
     gene            complement(10176..12569)
                     /gene="malP"
                     /locus_tag="OQQ75_001859"
     CDS             complement(10176..12569)
                     /gene="malP"
                     /locus_tag="OQQ75_001859"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HCS1976216.1"
                     /translation="MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALA
                     EMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQEVQDSLKAYDINLTDL
                     LEEEIDPALGNGGLGRLAACFLDSMATIGQSATGYGLNYQYGLFRQSFVDGKQVEAPD
                     DWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPL
                     RLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQ
                     CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAW
                     AITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK
                     VWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN
                     GITPRRWIKQCNPALAALLDKLLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANK
                     VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP
                     RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLQDYCVSAAEKLIP
                     AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE
                     QVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYL
                     VMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR"
     gene            13181..15886
                     /gene="malT"
                     /locus_tag="OQQ75_001860"
                     /pseudo
     CDS             13181..15886
                     /gene="malT"
                     /locus_tag="OQQ75_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312287.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
     gene            complement(15929..16945)
                     /gene="rtcA"
                     /locus_tag="OQQ75_001861"
     CDS             complement(15929..16945)
                     /gene="rtcA"
                     /locus_tag="OQQ75_001861"
                     /EC_number="6.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HCS1976217.1"
                     /translation="MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAK
                     PGLLRQHLTAVKAAAEICRATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVL
                     QTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFY
                     PAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSL
                     HEQNIHNLPRDQGPGNTVSLEVESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLAS
                     PAAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIEIDGVTR
                     VSIE"
     gene            complement(16949..18175)
                     /gene="rtcB"
                     /locus_tag="OQQ75_001862"
     CDS             complement(16949..18175)
                     /gene="rtcB"
                     /locus_tag="OQQ75_001862"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-splicing ligase RtcB"
                     /protein_id="HCS1976218.1"
                     /translation="MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIA
                     VMPDVHLGKDSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQA
                     IETAVPHGRTTGRCKRDKGAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHL
                     GTLGTGNHFIKICLDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRD
                     LAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQPQTLAMEE
                     INCHHNYVQKEQHFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCS
                     CSHGAGRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMTAQSD
                     LVEVIYTLRQVVCVKG"
     gene            18364..19962
                     /gene="rtcR"
                     /locus_tag="OQQ75_001863"
     CDS             18364..19962
                     /gene="rtcR"
                     /locus_tag="OQQ75_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RtcR"
                     /protein_id="HCS1976219.1"
                     /translation="MRKTVAFGFVGTVLDYAGRGSQRWSKWHPTLCLCQQESLVIDRL
                     ELLHDARSCSLFETLKRDIASVSPETEVVSIEIELHNPWDFEEVYACLHDFARGYKFQ
                     PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQTSPPRKKEQPRGAGEVTIIDLD
                     LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG
                     AGKSFLARRIFELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG
                     LLRSANGGMLFFDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL
                     RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHATLTGDSVRFNTE
                     ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES
                     RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSATGRQLFDVSRQGKASVNDA
                     DRLRKYLARFGLTWEAVQDQHSSS"
     gene            complement(19944..20702)
                     /locus_tag="OQQ75_001864"
     CDS             complement(19944..20702)
                     /locus_tag="OQQ75_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HCS1976220.1"
                     /translation="MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELA
                     EQNLILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTT
                     PEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFI
                     SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN
                     MGSISMVDAVYTDAPPPVSVMQVLTDHHIQLELC"
     gene            complement(20719..21549)
                     /gene="glpG"
                     /locus_tag="OQQ75_001865"
     CDS             complement(20719..21549)
                     /gene="glpG"
                     /locus_tag="OQQ75_001865"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease
                     GlpG"
                     /protein_id="HCS1976221.1"
                     /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQ
                     AERVRAELARFLENPADPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVVMI
                     ACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWY
                     LGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD
                     PQSGIYLQRGLIIFALIWIIAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK
                     "
     gene            complement(21594..21920)
                     /gene="glpE"
                     /locus_tag="OQQ75_001866"
     CDS             complement(21594..21920)
                     /gene="glpE"
                     /locus_tag="OQQ75_001866"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HCS1976222.1"
                     /translation="MDLFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT
                     NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA
                     EVAYGA"
     gene            22110..23615
                     /gene="glpD"
                     /locus_tag="OQQ75_001867"
     CDS             22110..23615
                     /gene="glpD"
                     /locus_tag="OQQ75_001867"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HCS1976223.1"
                     /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA
                     SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR
                     IGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV
                     RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDEGM
                     HLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYK
                     GDPKAVKIEESEINYLLKVYNAHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDY
                     TLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIE
                     GDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGAISDLGEDFGHEFYEAE
                     LKYLVDHEWVRRTDDALWRRTKQGMWLNADQQSRVSQWLVEYTQQKLSLAS"
     gene            complement(23667..>24061)
                     /locus_tag="OQQ75_001868"
     CDS             complement(23667..>24061)
                     /locus_tag="OQQ75_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976224.1"
                     /translation="VMAGIGWQFSRRTPPELKNRLHCWLVFSPVYFWLILSNFILYIS
                     PEKSALLENIRNFFLTFVWPPLNFSPFWPQPWTDFVGPISAQLGFALGYYCHWCRKNR
                     NQRKKWGDWVTCLSLAILAQGPLFNYLQ"
BASE COUNT         5657 a         6553 c         6081 g         5770 t
ORIGIN      
        1 accaaactca taatatattc cggcaatatt tatcacttca ttaacaactg aaaccttaat
       61 taaacattag ccagtccggg taattcacta ttcgaattat attttcgctg cgatataacc
      121 ttgagccaca tcaacattga gtcagattat tattcaaacc aacattcgca cacattttaa
      181 gtattgctga tagaaaccat tctcattatc attgtgttat tgattattta atctctcctt
      241 tgttggcaaa tcatctggtc tcatgtcgct gtcaaacgcc ccatgaggta gttatccagt
      301 taatgagaaa caagtaggca cctatgcaat acactccaga tactgcgtgg aaaatcactg
      361 gcttttcccg tgaaatcagc ccggcatatc gccaaaaact gctttctctt ggcatgttac
      421 ctggctcctc ttttaatgtg gtgcgcgtcg ctccactcgg cgaccccatt catatcgaaa
      481 cccgtcgtgt gagcctggta ttacgcaaaa aagatctggc cttattagaa gtggaagcgg
      541 tttcctgtta atacggtgat aacaacaatg aaaaaattaa ccataggctt aattggtaat
      601 ccaaattctg gcaagacaac cttatttaac cagctcactg gcgcacgtca gcgtgtaggt
      661 aactgggctg gcgttaccgt cgaacgtaaa gaagggcaat tctccaccac cgatcatcag
      721 gtcacgctgg tggacctacc cggcacctat tctctgacca ccatctcatc gcagacctcg
      781 ctcgatgagc aaatcgcctg tcactacatt ttgagtggcg acgccgacct gctgattaac
      841 gtggtggatg cgtctaacct tgagcgtaac ctgtacctga cgctacaact gctggaactc
      901 ggcattccct gcattgtggc actgaacatg ctcgacattg ccgagaagca aaatattcgt
      961 attgaaattg atgctctgtc ggcgcgtctg ggctgtccgg tgatcccgct ggtttcaacc
     1021 cgtggtcgcg gtattgaagc gctcaagctg gcgattgatc gctataaagc taacgagaat
     1081 gtggaactgg tgcattacgc acagccgctg ctcaacgaag cagattcact ggcaaaagtg
     1141 atgccttccg acatcccgct gaaacaacgt cgctggctgg gcctgcaaat gctggaaggc
     1201 gatatctaca gccgcgccta cgccggtgaa gcgtcgcagc atctggatgc cgccctcgcc
     1261 cgtctgcgta atgagatgga cgatccggcg ctgcacattg ccgatgcgcg ttaccagtgc
     1321 attgctgcca tctgtgatgt ggtaagcaac accctgacgg cagaacccag ccgtttcacc
     1381 actgcggtag ataaaatcgt gctcaaccgt ttcctcggtc tgccgatttt cctctttgtg
     1441 atgtacctga tgttcctgct ggctatcaac atcggcgggg cgttacagcc gctgtttgac
     1501 gtcggctccg tggcgctatt tgtgcatggt attcaatgga ttggctacac gctccacttc
     1561 ccggactggc tgactatctt cctcgcccag ggcctgggtg gcggcattaa caccgtgctg
     1621 ccactggtgc cgcagattgg catgatgtac ctgttcctct ccttccttga ggactccggg
     1681 tatatggcgc gtgcggcgtt tgtgatggac cgtctgatgc aggcgctggg cttgccgggg
     1741 aaatcctttg tgccgctgat cgtcggtttc ggttgtaacg taccgtcggt aatgggtgca
     1801 cgtacgcttg atgcaccgcg tgaacgtctg atgaccatca tgatggcacc gtttatgtcc
     1861 tgcggcgcgc gtctggctat cttcgcagta ttcgcggctg ccttcttcgg gcagaacggt
     1921 gcgctggcgg tcttctcgct gtatatgctg ggtattgtga tggcggtgct gactggcctg
     1981 atgctcaagt acaccatcat gcgcggtgaa gcgacgccgt ttgtcatgga gttgccggtc
     2041 tatcatgtac cacacgttaa aagcctgatt atccagacct ggcagcgtct gaaaggcttc
     2101 gttctgcgtg ctggtaaagt gatcatcatc gtcagcattt tcctgagcgc tttcaacagc
     2161 ttctcgctga gcgggaaaat cgtcgataac atcaacgact cggcgctggc gtccgtcagc
     2221 cgggtgatca ccccggtctt caagccaatt ggcgtgcatg aagataactg gcaggcaacg
     2281 gttggcctgt ttacaggtgc catggcgaaa gaagtggtag tgggtacgct caacaccctc
     2341 tacaccgcag aaaatattca ggacgaagag ttcaatccgg cagagtttaa cctcggtgaa
     2401 gagctgttca gtgcgataga tgaaacctgg cagagcctga aagacacctt cagccttagc
     2461 gtactgatga accccattga agccagcaaa ggcaacggcg aaatgggtac cggggcgatg
     2521 ggcgtgatgg atcagaaatt cggtagcgca gcagcagctt acagctacct gattttcgtc
     2581 ctgctgtatg taccatgtat ctcggtgatg ggagccatcg cccgtgaatc aagccgtggc
     2641 tggatgggct tctccatcct gtgggggctg aatatcgctt actcgctggc aacattgttc
     2701 tatcaggtcg ccagctacag tcagcaccca acttacagcc tggtgtgcat tctggcggtt
     2761 atcctgttta acatcgtggt tatcggtctg ctgcgccgcg cgcgtagccg ggtggatatc
     2821 gaactgctgg caacccgcaa gtcggtaagc agttgctgcg cagccagcac caccggtgat
     2881 tgccattaat ggcttcactt attcaggtgc gcgatttgct ggcgttacgg ggccgtatgg
     2941 aagcggccca gataagccag acattgaaca ctccacagcc aatgattaac gccatgctgc
     3001 aacaactgga aagtatgggc aaagccgtgc ggattcagga agaacctgac ggctgcctct
     3061 ctggcagttg taaaagctgc ccggaaggaa aagcctgtct gcgcgagtgg tgggcgcttc
     3121 gttaacctta ctccatcgcc tgttttggaa agcccggtat gcgtcggcat ccgggctttt
     3181 ttgcgtgcgg ctttccataa aaatgcaact cttgcagcac ggcgtaagtt cctttgaaag
     3241 catctcgcag ggatgaaaac tcgctaatac acaggtgtgg agtggcgcgt agagtcgcgg
     3301 cattcaaaca acaggtgaag gaacgccatg agcaaaaagc agagttccac cccacacgat
     3361 gcgctgttca aactcttttt acgccaaccg gacacggctc gtgattttct tgcgtttcat
     3421 ttaccggcac ccattcacgc gctttgtgat atgaaaaccc tcaagctgga gtcgagcagc
     3481 tttattgatg acgatctgcg tgaaagctat tccgatgtgc tgtggtcggt gaaaacggaa
     3541 caaggaccag gatacatcta ttgtctgatt gaacatcaaa gcacctcaaa caaactgatc
     3601 gcatttcgca tgatgcgtta cgctattgcc gcaatgcaaa atcaccttga tgctggatac
     3661 aaaacgttgc cgatggtggt gccattgttg ttttaccacg gtattgaaag cccctatccc
     3721 tattcgctgt gttggctgga ttgtttcgcc gatcccaaac tggcaaggca gctttatgcc
     3781 tccgcatttc cgctgattga tgtcaccgtc atgcctgatg atgaaatcat gcagcaccga
     3841 cgtatggcgc tgctggagtt aattcaaaaa catattcgtc aacgcgacct gatggggcta
     3901 gtagagcaaa tgggctgctt attaagtagt ggatacgcta atgacagaca aatcaaaggg
     3961 ctgtttaatt acatactgca aaccggcgac gcggtacgtt ttaacgattt tatcgacggc
     4021 gttgccgaac gttcaccgaa acacaaggag agtttaatga caattgcgga aagattgcgg
     4081 caggaggggg aacaatccaa agccctgcat atagccaaaa taatgcttga atccggagtc
     4141 cctcttacag acatcatgcg ctttaccggg gtgtcagaag aagagttggc tgcggcgagc
     4201 cagtaaattt ctgtctcgcc atttcaaaag ttgcctacac cctctgcttc aacgccacca
     4261 gcaggtgaca aaactcgacc ggatgcgaaa taaacggcgc atgggccgct ttggcgaaga
     4321 tatatgattt gctgcgaggc cagagtttat ccagcatcgg caccactttg cgcggcacca
     4381 gaccatcgag atagccatac aatcgcaaaa acggcatggg cacgttttgc agcggctgac
     4441 ggagatcaac cgttttcagg atttccagcc cgccattaag cacgtcaacc tccggcatcg
     4501 gtaacgccag aacggttttc ttcaacgccc gcgcatcctg gcgcgccgtt tcagtcccca
     4561 tggtttgtaa cgccaggaac cgctccactg tacgctgaaa atcatcactg agttgctgct
     4621 gaaatcccgc cagcacgtcc ggttttatcc ccggccaatc gtcacgagca ctaaaacaag
     4681 gtgacgacgc cacggtgacc agcgcctgaa cacgctcggg atgggttaac gcaatctggc
     4741 ttgccaccag cccgcccaga ctccagccta accaaatggc tttatcaggt gcctgttgca
     4801 gcacggcttc ggccatatca gcaagtgaca gcgcaccaaa tccctggctg cgcccgaagc
     4861 cgggcagatc aacaaggtgc agcgtaaaat gcgagctaag ttcctcgtca atgcaacgcc
     4921 acacttcggc attcagtccc catccgtgca gcagcacaag atgaacattc ccctgacctt
     4981 tggtctgcca ccagatgtta ttcatccgct attgttctct tttgacttac aaggatgaac
     5041 atatgctaac agtaccggga ttatgctggc tatgccgaat gccgctggcg ttaggtcatt
     5101 gggggatttg ttcggtctgc tcacgcgccg cccgtacaga taaaacgtta tgcccacaat
     5161 gtggattacc cgccacacac tcacatcttc cctgcggtcg ctgcctgcaa aaaccaccgc
     5221 cctggcaaag actggtcacg gttgccgact atgcgccgcc gttaagtccg cttatccacc
     5281 agcttaaatt ttcccggcgc agtgaaatcg ccagcgccct gtcacgtctg ttactattgg
     5341 aagtcttaca cgctcgtcgc accaccgggt tgcaattgcc ggatcgcatc atcagcgttc
     5401 cgttatggca gcggcgtcac tggcgtcggg gatttaatca gagcgatttg ctgtgtcagc
     5461 cgttatcacg ctggttgcac tgccgatggg atagcgaagc cgtcacacga acacgggcca
     5521 ctgcgaccca gcattttctc agtgcccggc tacgcaagcg caacctgaaa aatgcctttc
     5581 gtcttgaatt gcccgtgcaa ggtcgccata tggtgattgt ggatgatgtc gttaccaccg
     5641 gaagtaccgt cgcagagatt gcgcagttgc ttttacgcaa tggtgcggcg actgtccagg
     5701 tctggtgcct ttgtcgaacc ttgtagagcc tcgatgatag gcgtattata accaactaaa
     5761 atagtcaact attaggccat tactatgatc cgtatttccg atgctgcaca agcgcacttt
     5821 gccaaactgc tggcaaacca ggaagaaggg acacaaatcc gcgtatttgt gattaaccct
     5881 ggcacgccta acgctgaatg tggtgtttct tattgtccgc cggatgccgt ggaagccacc
     5941 gacactgccc tgaaatttga cctgctgacc gcgtatgttg atgagttaag cgctccttac
     6001 ctggaagatg cagagatcga ttttgttacc gaccagttgg gttctcagct aacactgaaa
     6061 gcgcctaacg ccaaaatgcg taaagtggca gacgatgcac cactgatgga gcgcgtggag
     6121 tatatgctgc agtcgcagat caacccacag cttgctggtc acggtggccg cgtttcactg
     6181 atggaaatca ccgaagacgg ttacgccatt ctgcaatttg gcggcggctg taacggttgt
     6241 tccatggtcg atgtgacgct gaaagaaggg atcgagaagc agctgctaaa cgaattcccg
     6301 gagctgaaag gtgtgcgcga tctcaccgaa caccagcgcg gcgaacactc ctactactaa
     6361 gttatcccct cttttgtaga ttgcccgatg cgacgctaaa gcgtcatttc gggcctacgt
     6421 tgaacatgtg ccagacgttg gcgcagcatt gctttggcaa atccctccct tcgtttctcc
     6481 gcgataatat gaccaacctc tcataattta aatttactcc gctctggtga ttctcaaacg
     6541 ccagatgtta ccggtatcat tcacatgggt accaaacata ctcctgacat ctgactacaa
     6601 taattagttt tagtgggtat cagtcgtggt gccgcaatat ctctgttccc gattgggata
     6661 attagagttt gtcgtcagaa aattgacgtt acccataaca aatgaaaggc caggtaaatc
     6721 atgccattag tcattgttgc tatcggtgta atcttgttgt tgctcctgat gatccgtttc
     6781 aaaatgaacg gcttcatcgc tctcgtcctc gtggcgcttg ctgttggatt aatgcaaggg
     6841 atgccgctgg ataaagttat tggctccatc aaagccggtg tcggcgggac gctcggtagc
     6901 cttgccctga tcatgggttt tggcgcgatg ctgggcaaaa tgctggcaga ctgcggtggc
     6961 gcacaacgta tcgccaccac cctgattgcc aaatttggta aaaaacacat ccagtgggcg
     7021 gtggtactga ccggttttac cgttggtttt gccctgttct atgaagtggg ctttgtgctg
     7081 atgctgccgc tggtgtttac catcgcggct tctgcgaata ttccactgct gtatgttggt
     7141 gtaccaatgg cagctgcact gtctgtgacc cacggcttcc tgccaccgca tccgggtccg
     7201 actgcgattg ccaccatttt caatgccgac atgggtaaaa ccctgctgta cggtactatt
     7261 ctggcaatcc cgaccgtgat tctcgccggt ccggtttacg ctcgcgtgtt gaaaggtatc
     7321 gataagccga tccctgaagg tctgtacagc gcgaaaacct tcagcgaaga agagatgccg
     7381 agctttggcg tcagcgtctg gacctctctg gtgccggtag tgctgatggc gatgcgtgcg
     7441 attgccgaaa tgatcctgcc gaaaggtcac gctttcctgc cggtagcgga gttcctcggt
     7501 gacccggtaa tggctacgct gattgccgtg ctgattgcga tgttcacctt tggtctgaac
     7561 cgtggtcgtt caatggatca gattaacgac acgctggttt cttccatcaa aatcattgcg
     7621 atgatgctgt tgatcatcgg tggtggcggt gcgttcaagc aggtgctggt agacagcggc
     7681 gtggacaaat acattgcttc catgatgcac gaaaccaaca tttctccgct gctgatggcc
     7741 tggtcgattg ctgccgtact gcgtatcgcg ctgggttccg caaccgttgc ggcaatcact
     7801 gcgggtggta tcgcggcacc gctgattgca acgacgggtg ttagcccgga gctgatggtt
     7861 attgcggtgg gttccggtag tgtgattttc tctcatgtga acgatccggg cttctggctg
     7921 ttcaaagagt actttaacct gactatcggc gagaccatca aatcctggtc gatgctggaa
     7981 accattatct cggtgtgcgg tctggtaggc tgtctgctgc tgaatatggt gatttgataa
     8041 cactgactgc cggatgcatc gcatccggca tcaaccgcac tctactgctt cttcgctgca
     8101 gctctgcgcc gtctgtccaa atccttcagc aacttattca cgccatcatc ggcaaacatc
     8161 gtctcaagcg ttgcggaaag cttgcgtcgc cagtttttat actggtaact ggtgccagga
     8221 atattcaccg gttcggccat atccagccag tcttccggct gtagtcctaa cagagcactg
     8281 ttactgtcgg caatgtagcg ctgcaaacca cgattaagcg tcggcgtcat cgacatcaac
     8341 gatgccttat gcccggcacg ttttggcaga caaccatatt tatgcagtgc atccagcagc
     8401 ccttgcttcg ccagttcgcg atcctgatac agaccgcgca gtaccacttc atccggatac
     8461 agccccaggg ttttgcccaa cgttagatcc ccgctctccc agtaaccgcg cagcgtaggc
     8521 aggtcatgtg tcgccgcaac cgccatcgac tgctccggat acgctttcgg tgcacggaac
     8581 gtcttctcgt ggtcgttttc gaaatagagc actttgtagg agtacacacc gctgctgcgc
     8641 agcttaccga caatctctac cggtacggta ccgagatctt caccaatcac catacagcga
     8701 tgacgtttac tttcgagtgc cagaatcgag agcagatcat ccaccggata gtgaacatac
     8761 gcgccctgat ctgccgtctc gccatacggt atccaccaca aacgcagcat cgacatcaca
     8821 tggtcaattc gtaatgcgcc gcagttttgc atattggcac gcaacagctc gataaacggt
     8881 tcataggcac gcgcggtgat gatatgcggg tccattggcg gtaatcccca gttctgcccc
     8941 aacgggccga ggatatccgg cggcgcgcca accgacgctt tcaggcaata tagttcacgg
     9001 tcacaccagg tttccgcccc accttccgct acgccaaccg ccagatcacg atacaagcca
     9061 atcggcattt catagccctg gcttatctcc cagcaggcgg caaactggct gtaagccagc
     9121 cactgcaacc agagataaaa atcgacgtca tcacgatgtt cttcgcagaa ctgacgcact
     9181 tctggtgaat ccacgttctg atacatctct ggccatgcag gccagcccca gcgcatttcg
     9241 tcctctttca cttgctgggc atgtagcgca tcaaaggctg cctgccagaa caggctgtcg
     9301 ccctgctctg caacaaactg gcgaaacgcg gtcatctgct catcatcacg ttgcgcgaaa
     9361 cctttccacg ccattcgtaa tgctgtcatt tttagggcgg taaccgtgga gtaatcgacc
     9421 cagtcggcat cgcgcgcctg ttgcagcgtc tgttgcgtgg tcggcaactg ccaccaggcc
     9481 tgagcctctt cgctaagatg gaaatcttca acggcgttaa cgtcgatata aatcacattc
     9541 agccaacggc gagaagacgg actgtatggg ctggcactct ccggatttgc cggatagagc
     9601 gcatgaatcg ggttcaggcc gatgaacgac ccgccacgtt ttgccacatc caccagcatc
     9661 gctttgagat cgccaaaatc cccaataccc cagttttttt ccgatcgcag cgtataaagc
     9721 tgaacgcagg caccccacag cttttgttta ttcagcaacg cctgcggttc gtaacagcgt
     9781 ttcggggcga caatcacccg gcaatgcgcg cgctggtcgt cctgggtgag tgtcagcgtg
     9841 tgataacctt ccggcagctt cgtcggtaga ttgaacgctt tgccccccgt tacatggcct
     9901 ttgtactgtg ttccttcttc ggtggtcagc agccagctat attcgccgct gccctccacc
     9961 accatcggca tttttttgcc gctggtataa accatgacat tcgggactgg cgttaccgcc
    10021 actttcgtgg cggtacgttg atgcatcgcg tcaagcaaac gccgtttggt ttcggcgcta
    10081 atcgactgcg gtttaccgtg ggcattgatg taattggggc taatccccgc cgccagcgcg
    10141 gcattatcca gacgtttgct ttccatcgag cttccttagc gttttgcctg ccagatacga
    10201 gcctgataat cgcgaataga gcgatccgag ctaaacatac cgcagcgggc ggtattgagg
    10261 atcgccgcgc gagtccaggc ctcctggtcg cggtacagca catccacctg cttttgtgcc
    10321 tcaacatagg ctgcgaaatc cgccatcacc agatacggat cgccgccttg tttgccgata
    10381 ctgtgcagca tctggtcgaa ggcatgctta tcgccgtcgc tgtatttacc gctttccagc
    10441 tctttcaata ctgcgtccag caccttatct ttcttccgcc atttcaccgg gtcgtagcct
    10501 ttggccagaa ttgccttcac ttgttccacg gtatgaccaa aaataaagat attttcttca
    10561 ccgactttct cggcgatttc aacgttcgca ccatccagcg taccgacagt aagcgcacca
    10621 ttgagcgcca gtttcatatt gccggtaccg gaagcttctt tacctgcagt cgaaatttgt
    10681 tcggagatat ccgccgccgg gatcagtttt tccgccgccg aaacgcaata atcctgcagg
    10741 aacaccacct tcaacttatc gccaaccagt ggatcgttgt tgatcacgtc agccactttg
    10801 ttgatcgcaa agataatatt cttcgccagg tagtagcccg gtgccgcttt cgcgccgaag
    10861 aggaagacgc gcggtacgcg atcagcctgc gggttttcac gaatttcttt gtacaacgcc
    10921 agaatatgca gcagattcag gtgctggcgt ttgtactcat gcagacgttt aatctgaata
    10981 tcgaaaatcg cctgtggatt gatctcaata ccggtacgaa ctttcacaaa ctccgccaga
    11041 cggactttat tcgcctgctt gatctcgcga tattgctgac ggaatttcgc atcatcagcg
    11101 aatttttcca gattgatcag ctgatcgaga tcgttagccc actctttttg cagtaattta
    11161 tccaacagag ccgccagtgc agggttgcac tgtttgatcc agcgacgtgg ggtaataccg
    11221 ttggtgacgt tatggaattt gttcggccat agctggtgat attccgggaa cagatctttc
    11281 accaccagat ccgagtgcag cgccgcaaca ccgttcaccg cgaaaccgcc aaccacacac
    11341 aggttcgcca tatgcacttg tttatcgtgc accaccgcca gtttggccca cactttttca
    11401 tcgcccggcc aggttttctc caccagcgtt ttaaagcgag tattaatttc gttaataatc
    11461 tgcatatggc gcggcagtaa gcctttcacc agtttcacat cccagcgttc cagcgcttct
    11521 ggcatcaggg tatggttggt gtaagcgaaa gttttgctgg taatggccca ggcgtcatcc
    11581 cagctcatct ggtgctcatc gatcagcacg cgcagcagtt ctggaatcgc gatagttggg
    11641 tgggtatcgt tcagctgaat aacttcataa tccgccagtt cgtgcagttt acgccccgcc
    11701 agatgatggc gacgcaaaat atccgctacc gaacaggcac actggaagta ctgctgcatc
    11761 aagcgcagct ttttaccggc agtatggttg tcgtttggat agagaacttt ggtcagtttt
    11821 tccgcattga tgccctgctg ttcggcacgc aggaaatcac cgtcgttaaa tttagtcaga
    11881 tcaaacggat gcgcgtgcgt cgcctgccac agacgcagcg gctgcgccac gccattacga
    11941 tagccgacaa cggggagatc ccacgcttga ccggtaatgg taaactccgg ctcccagcgt
    12001 ccgtctttcg tcactttacc gccaatccct acctgcacat ccagtgcttc gttgtggcgg
    12061 aaccacgggt agttactgcg atgccagtca tccggcgctt caacctgttt gccatcgaca
    12121 aaagactggc ggaacaaacc atattgatag ttcagaccgt aacccgtcgc agactgaccg
    12181 atagttgcca ttgagtcgag gaagcacgcc gccagacgtc ccagaccacc gttacccagc
    12241 gccgggtcga tctcttcttc cagcaggtcc gtcagattga tgtcataagc cttcaacgaa
    12301 tcctgtactt cctgatacca gccgagattc aacaggttgt tgcccgtcag gcgaccaatc
    12361 aaaaactcca ttgagatgta gttaacatgt cgctgattcg ccaccggctt ggcgaatggc
    12421 tgagcacgca gcatttcggc cagtgcttca ctcactgcta gccaccactg gcgaggagtc
    12481 atttcagccg cagaatttaa gccataacgc tgccactgac gtgaaagcgc ttcctgaaat
    12541 tgcttatcgt taaaaatagg ttgtgacata ggagttccac ttttcttaga ttttcaacac
    12601 aacgttatcg ctagtttgcc aggctcgatg ttgaccttcc tcatcctgcg ggggattagg
    12661 cagggaggag ttgcggggat gagcaaggaa atgtgatctc aaccacttaa agctagtgca
    12721 aaccacagga ttagcagcaa atcaatgcaa tacagcgcag aaaatctgta tctaagtgca
    12781 aaaaatggcc gttgcgtatt ttcaaaaagc ggaaggtaac tctataaatt aagtaaagga
    12841 gtgaaacagt ttcacaagta aaatatccag tgtgctccat ctcattctta atagatttat
    12901 taagatcatc tttttagatg gcactttcat caggaatgaa gaagaaaccc ttgcttaaat
    12961 gaatctgatg aacataaggg aaaccagtat tcacgctgga tcagcgtcgt tttaggtgag
    13021 ttgttaataa agatttggaa ttgtgacaca gtgcaaattc agacacataa aaaaacgtca
    13081 tcgcttgcat tagaaaggtt tctggccgac cttataacca ttaattacga agcgcaaaaa
    13141 aaataatatt tcctcatttt ccacagtgaa gtgattaact atgctgattc cgtcaaaact
    13201 aagtcgtccg gttcgactcg accataccgt ggttcgtgag cgcctgctgg ctaaactttc
    13261 cggcgcgaac aacttccggc tggcgctgat cacgagtcct gcgggctacg gaaagaccac
    13321 cctcatttcc cagtgggcgg caggcaaaaa cgatatcggc tggtactcgc tggatgaagg
    13381 tgataaccag caagagcgtt tcgccagcta tctcattgcc accgtgcagc aggcaaccaa
    13441 cggtcactgt gcgatatgtg agacgatggc gcaaaaacgg caatatgcca gcctgacgtc
    13501 actcttcgcc cagcttttca ttgagctggc ggaatggcat agcccacttt atctggtcat
    13561 cgatgactat catctgatca ctaatccagt gatccacgag tcaatgcgct tctttattcg
    13621 ccatcaacca gaaaatctca ccctggtggt gttgtcacgc aaccttccgc aactgggcat
    13681 tgccaatctg cgtgttcgtg accaactgct ggaaattggc agtcagcaac tggcatttac
    13741 ccatcaggaa gcgaagcagt tttttgattg ccgtctgtca tcgccgattg aagccgcaga
    13801 aagcagtcgg atttgcgatg acgtttccgg ttgggcgacg gcactacagc taatcgccct
    13861 ctccgcccgg cagaataccc actcagccca taagtcggca cgccgcctgg cgggaatcaa
    13921 tgccagccat ctttcggatt atctggtcga tgaggttttg gataacgtcg atctcgcaac
    13981 gcgccatttt ctgttgaaaa gcgccatttt gcgctcaatg aacgatgcgc tcatcacccg
    14041 tgtgaccggc gaagaaaacg ggcaaatgcg tctcgaagag attgagcgtc aggggctgtt
    14101 tttacagcgg atggatgata ccggcgagtg gttctgctat cacccgctgt ttggcaactt
    14161 cctgcgccag cgctgccagt gggaactggc ggcggagctg ccggaaatcc accgtgccgc
    14221 cgcagaaagc tggatggccc agggatttcc cagcgaagcg attcatcatg cgctggcggc
    14281 aggcgatgcg ctgatgctgc gcgatattct gcttaatcac gcctggagtt tgttcaacca
    14341 tagcgaactg tcgctgctgg aagagtcgct taaggccctg ccgtgggaca gtttgctgga
    14401 aaatccgcag ttagtgttat tgcaggcgtg gctaatgcaa agccaacatc gctatggcga
    14461 agttaacacc ctgctagccc gtgctgaaca tgaaatcaag gacatcagag aaggcaccat
    14521 gcacgcagaa tttaacgctc tgcgcgccca ggtggcgatt aacgatggta atccggatga
    14581 agcggaacgg ctggcaaaac tggcactgga agagctgcca ccgggctggt tctatagccg
    14641 cattgtggca acctcggtgc tgggtgaagt gctgcactgc aaaggcgaat tgacccgctc
    14701 actggcgcta atgcagcaaa ccgaacagat ggcacgccag cacgacgtct ggcactacgc
    14761 cttatggagt ttaatccagc aaagtgaaat tctgtttgcc caagggttcc tgcaaaccgc
    14821 gtgggaaaca caggaaaaag cgttccagct gatcaacgag cagcatctgg aacagctgcc
    14881 gatgcatgag tttctggtgc gcatccgagc acaactgtta tgggcctggg cacggctgga
    14941 tgaagccgaa gcgtcggcgc gtagcgggat tgaagtcttg tcgtcttatc agccacagca
    15001 acagcttcag tgcctggcaa tgttgattca atgctagctg gcccgtggtg atttagataa
    15061 cgcccgtagc cagctgaacc gtctggaaaa cctgctgggg aatggcaaat atcacagcga
    15121 ctggatctct aacgccaaca aagtccgggt gatttactgg caaatgaccg gcgataaagc
    15181 cgccgctgcc aactggttgc gtcatacggc taaaccggag tttgcgaaca accacttcct
    15241 gcaaggtcaa tggcgcaaca ttgcccgcgc acaaatcttg ctgggcgagt ttgaacctgc
    15301 ggaaattgtt ctcgaagaac tcaatgaaaa tgcccgcagt ctgcggttga tgagcgatct
    15361 caaccgtaac ctgttgctgc ttaatcaact gtactggcag gccggacgta aaagtgacgc
    15421 ccagcgcgtg ttgctggacg cattaaaact ggcgaatcgc accggattta tcagtcattt
    15481 tgtcatcgaa ggcgaagcga tggcgcaaca actgcgccag ctgattcaac tcaatacgct
    15541 gccggaactg gaacagcatc gcgcgcagcg tattctgcga gaaatcaatc aacatcatcg
    15601 gcataaattc gcccatttcg atgagaattt cgttgaacgt ctgctaaatc atccggaagt
    15661 gccagaactg atccgcacca gcccgttgac ccaacgtgaa tggcaggtcc tggggctgat
    15721 ctactccggt tacagcaatg agcaaattgc gggcgagctg gaagtggcgg caaccaccat
    15781 caagacgcat atccgcaatc tgtaccaaaa actcggcgtc gcccaccgtc aggccgcggt
    15841 acaacacgcg cagaaactgc tgaagatgat gggatatggg gtgtgagttt agccggataa
    15901 tgcattggat ccggtttaca tctttacatc attcaatact cacccgcgtt acgccatcta
    15961 tttctatcaa accaaaccgc accggcaaga aacgctccac cacggcgata ttggtcagca
    16021 aatggcatga aggatgggcg accgtaaatt ctcccgcgcc cgccagcgcc atcggtagca
    16081 ccagctggtc ggcgagatat tcccccactg ccgccgggct tgccaggtag cgtttcacct
    16141 ctttcactaa ctgcgcggct accacctcgg cactgacgcg cttttcaccg acgacgaaaa
    16201 agcgttcagt gatattttca ctttcgactt ccagcgagac ggtattaccc ggcccctggt
    16261 cgcgcggcag gttatgaata ttctgttcat gcagggaaaa actccccgcc agtgtagcga
    16321 tttcacgctc agcaacatgg cgcggcacac cagctaatag aacttctcca cgcatctgca
    16381 caatgttccc gcgctcgcca agttgcaagg tgttaaacga tgccacgggc gagacttccg
    16441 ttgccaccac gccgcctccg gcaggataaa aaccgtgacg taacagcgtg gtttgctgat
    16501 gaattcctat tttcgccagc agcggctcca gcacccggcg gataaaatcc gcaggcggcg
    16561 ccgacgggtt atcggtgcct ccgctcactt caacacgcga aggtccatcg gcaaaccaca
    16621 gcgcgggcag caccgtttgc agcaccagcg tacagcttcc ggcactaccg atagcaaagc
    16681 ggtactcgcc gccgcgcacg gcgccaggcc ggaagaccag acgctgcgac cccagctccg
    16741 cgccttccac cgttgcccta caaatttccg cagccgcttt taccgcggtc agatgctggc
    16801 gcaacagccc cggtttcgcc cgcccggcac gaatgctggt gatggtaaat ggctggccgg
    16861 ttatcatcga caggctcagc gccgagcgca gaatctgccc gccaccttcg ccctgtgcgc
    16921 catccagcgc aatcatcctt ttcatcattt atccttttac gcacaccacc tgacgcaggg
    16981 tatagataac ttccaccaga tcgctttgtg ccgtcatcac cgcatcaata tctttatacg
    17041 ccatcgggat ttcgtcgatc acttcggcat ctttacggca ttccacatgc gcggtggcac
    17101 gaatttgatc ttccacgctg aacagttttt tcgctttagt tcggctcatt acccgcccgg
    17161 caccgtggct gcacgaacag aacgactctt catttcccag cccacggacg ataaagcttt
    17221 ttgctcccat cgaaccggga ataattccat attgaccagc acgcgcagac accgcgcctt
    17281 tacgcgtcac gtagatctct tcaccaaagt gctgttcttt ttgcacatag ttgtggtgac
    17341 agttgatctc ttccatcgcc agcgtttgtg gctgtctgac cgttttctgc gtaatgctct
    17401 gcaatgccgt taccacgttt tccatcatca catcgcggtt aaggctggca aaaagctgcg
    17461 cccaggccac ggctttcagg taatcatcaa agtattccgt accttccata aagtacgcca
    17521 gatcacgcga cggcaacgtc tcaagcgttt cctgcatctc tttttgtgcc agatcgataa
    17581 agtaagtccc gatggcgtta ccaattccgc gtgaaccgga gtgcagcata atccacacct
    17641 ggtccgactc atcaaggcag attttaataa agtggttacc ggttcccagc gttcccaggt
    17701 gtttatagtt attggtattc aggaaacggg gatatttttg cgttaaccac tgataaccgg
    17761 cttcaagctc agcccatttc gcatcgacgt tgacaggcgg gttttcccat gcgcctttat
    17821 cacgtttaca acgcccggta gtacgcccgt gcggcacggc cgtttcaatc gcctgacgca
    17881 gctctgccag gttttcaggc aggtcttccg ccgttaacgc ggtacgcagc gcgttcattc
    17941 cacagccaat atccacgccc accgccgccg gaataatcgc ccctttggtc gggatcacgc
    18001 taccaatggt ggaatcttta cccaggtgta catcaggcat taccgcaata tgtttgaaaa
    18061 taaacggcat cttcgccgta ttaataagtt gctgacgcgc atcggcttct accggcacgc
    18121 ctttggtcca catttttacc ggggcatttt cagtggtcag taattcgtaa ttcattttgt
    18181 ttttctcttt tcgttgtttg ctgtcctgat aattgcaacc gtcgtgccag aaaattaaat
    18241 aagtaaatta attttttaat tcattgtttt taaaaagatt atatctttat gtccgtaacc
    18301 ggagatttcc cgcaaagccg atttaccgat aatgaaatat cgtcttttat aaggatatct
    18361 aagatgcgta aaacagtagc ttttggcttt gtcggaacgg tgctggatta tgccgggcgc
    18421 ggcagtcagc gctggtcaaa atggcatccg acactctgtt tatgccagca agaatcgttg
    18481 gtcatcgatc gactggaatt attgcatgac gcccgctcgt gctcgctatt tgaaacgctt
    18541 aaacgcgata tcgccagcgt ttcgccagaa acagaagtgg tgagcattga gattgaactg
    18601 cataacccgt gggatttcga agaggtttac gcctgcctgc atgatttcgc ccgtggttac
    18661 aagtttcagc cagaaaaaga agactattta attcacatca ccaccggcac ccacgtcgcg
    18721 cagatttgct ggtttctgct ggcggaagcg cgttatctac ccgcccggtt gatacaaact
    18781 tcaccaccgc gcaaaaaaga acaaccgcgc ggtgccggtg aagtgacgat tatcgatctc
    18841 gatctaagcc gttataacgc catcgccagc cgctttgccg aggaacgcca gcaaacgctt
    18901 gattttctta agtccggcat tgccacgcgt aacccccact tcaaccgcat gattgagcag
    18961 attgaaaaag tggcgattaa atcccgcgca ccgatcctgc ttaacggccc aaccggtgcg
    19021 ggaaagtcat ttctggcgcg acgtatattt gaattaaaac aggcgcggca tcagtttagc
    19081 ggcgcgtttg tggaagtgaa ctgcgccacc ctgcgcggcg ataccgccat gtcgacgctg
    19141 tttggtcatg tgaaaggcgc gtttaccggg gcgcgggaat ctcgtgaagg tttattacgc
    19201 agcgccaacg gcggaatgtt gttttttgat gagattggcg aactgggcgc agacgaacag
    19261 gcaatgctgc taaaagccat tgaagagaaa accttttacc cgtttggcag cgatcgccag
    19321 gtgagcagtg attttcagct tatcgccgga acggtgcgcg atttgcgcca gctggttgcc
    19381 gaaggcaaat ttcgcgaaga tctgtacgcg cggatcaatc tctggacctt caccctgccg
    19441 ggtctacgcc agcgccagga agatattgaa ccgaaccttg attatgaagt ggagcgccac
    19501 gccacactca ctggcgacag cgtgcgtttt aacaccgaag cgcggcgcgc ctggttggct
    19561 tttgcgacct ctccccaggc aacatggcgc ggtaactttc gcgaactttc tgccagcgtc
    19621 acgcggatgg ccacctttgc cactagcgga cgcatcactc tggacgtggt tgaagatgag
    19681 ataaaccgtc tgcgctataa ctggcaggag agccgcccct ccgcgcttac ggcgttgctg
    19741 ggcgcagagg cagaaaacat cgatctcttc gaccgtatgc aactggaaca cgttatcgct
    19801 atctgccgcc aggcaaagtc gctttctgca accggacgac agctttttga tgtttcgcgc
    19861 cagggaaaag ccagcgtcaa tgacgcggat cggctacgca aatacctggc gcgttttggt
    19921 ctgacgtggg aagccgtgca ggatcagcac agctccagtt gaatatgatg gtccgtcagc
    19981 acctgcatta cgcttactgg cggcggggcg tcggtgtaga cggcatctac catgctgatg
    20041 ctgcccatat tgaccatcgc gttacggcca aatttcgagt gatcgacaac cagcataacg
    20101 tggcgcgagt tctcaataat ggcgcgcttg gtgcgaactt cgtggtaatc gaactccagc
    20161 agcgagccgt cgctatcgat gccgcttatc cccagaatgc cgaaatcaag gcggaactgg
    20221 gagataaaat cgagcgtcgc ttcgccaatg atcccgccat cgcggctgcg taattcgcca
    20281 ccagcgagaa taatgcggaa atcttctttt accatcaacg tgttagcaac attgagattg
    20341 ttggtgacaa tacgcaaatt gctgtgatta agcagcgcgt gcgccaccgc ttccggcgtg
    20401 gtgccgatat cgataaacag tgtcgagccg ttggggattt gctccgccac tttgcgggca
    20461 atcctctctt tttcttcggt ctgggtggct ttgcgatcgt gccacggcgt gttaaccgaa
    20521 ctggaaggca gcgccgcacc gccatggtga cgcaggatca ggttttgctc cgccagctca
    20581 ttgaggtcgc ggcgaatagt ctgcgggctg acggagaaat gctctaccag ctcttcagta
    20641 ctgacataac cctgctgttt aaccagttcg ataataccgt tgtgacgttg tgtttgtttc
    20701 atttataaat ccctggaatt attttcgttt tcgcgcattg agcgaatcaa caaaagccat
    20761 cgctaaaccc acggctaacc cggcgatgtg tgctccgttc gccatcgaca tcccaaacaa
    20821 atcaaaccat ccggcgataa tccagatcag cgcaaagata attaacccac gttgcaggta
    20881 aatgccactt tgcggatcgc gctcaccacg tagccagacg tagcccatca gcgcatacac
    20941 cacgccagaa agcccgccaa accacggccc gctgaatttt tgctgcacat agccgcttaa
    21001 cagggcacta atgagagtaa taacaattag cttaccgcta ccgaggcgtt tttccaccgc
    21061 accgccgaga taccaccacc agagcaggtt aaagaggata tgcatcagcg agaagtgcat
    21121 taacgcgtgg gtgaagtaac gccagaactc aaatttcagt gttggatcga atggccaggc
    21181 cagccataac atcacttcct gatcgccgag aatttgcatg gcgataaaca ccaccacgca
    21241 ggcgatcatc accacccagg ttaccggacc tgcgcgttca cgcaaggcag caaagaaagg
    21301 ataacggcga taatgcagac cactgccggt atggcccgcc tgccagctgg ccgccagata
    21361 acgcggatct gccgggtttt cgagaaaacg cgccagctcc gcccgcacgc gctcggcctg
    21421 ggactcatcc gccagccaga catcgctttg gttatgttgt tgaatcgtaa ggataacacc
    21481 ctgcgtcgcc atgtaatcaa caaacgcctg cgccacgcgg gggttagcaa aagaggtaat
    21541 catcaacatc gttgctgtcg cttattccac acaaaagggg acagtataaa gcgttacgcg
    21601 ccgtacgcca cctctgcggg aaactgacgc tgccaggctt caaaaccgcc gtcaatgcta
    21661 tagaccacat cgtagccctg ttgcagcaga tactgcgccg cgcctttgct gctattgccg
    21721 tgataacaca tcaccatcac cggagtgtca aagtcgttat cacgcataaa cgcgcccagc
    21781 gtgtcgttgg ttaaatggaa agcctgcacc gcatgtccca ttgcgaaact ctgtggatcg
    21841 cgaatatcga ccagcaccgc ctctttttcc tgcaacttct ggtgcgcgtc ggcaacgtta
    21901 atacattcga acagatccat gcgtctctct ttctttacaa acaagtgggc aaatttaccg
    21961 cacagtttac gtcgaagcgg cagataaacg ccataatgtt atacatatca ctctaaaatg
    22021 ttttttcaat gttacctaaa gcgcgattct ttgctaatat gttcgataac gaacatttat
    22081 gagctttaac gaaagtgaat gagggcagca tggaaaccaa agatctgatt gtgataggtg
    22141 gcggcatcaa tggtgctggt atcgcggcag acgccgctgg acgcggttta tccgtgctga
    22201 tgctggaggc gcaggatctc gcttgcgcga cctcttccgc cagttcaaaa ctcattcacg
    22261 gtggcctgcg ctaccttgag cactatgaat tccgcctggt cagcgaggcg ctggctgaac
    22321 gtgaagtgct gctgaaaatg gctccgcata tcgccttccc aatgcgtttt cgcctgccac
    22381 atcgtccgca tctgcgcccg gcgtggatga ttcggattgg tctgtttatg tacgatcatc
    22441 tgggtaaacg caccagcctg ccgggatcaa ccggtttgcg ttttggcgca aactcagtgt
    22501 taaaaccgga aattaagcgc ggattcgaat attctgactg ttgggtagac gacgcccgtc
    22561 tggtactcgc caacgcccag atggtggtgc gtaaaggcgg cgaagtgctt actcggactc
    22621 gcgccacctc tgctcgccgc gaaaacggcc tgtggattgt ggaagcggaa gatatcgata
    22681 ccggcaaaaa atatagctgg caagcgcgcg gcctggttaa cgccaccggc ccgtgggtga
    22741 aacagttctt cgacgagggg atgcatctgc cttcgcctta tggcattcgc ctgatcaaag
    22801 gcagccatat tgtggtgccg cgtgtgcata cccagaagca ggcctacatt ctgcaaaacg
    22861 aagataaacg tattgtgttc gtgatcccgt ggatggacga attttccatc atcggcacca
    22921 ccgacgtaga gtataaaggc gatccgaaag cggtgaagat tgaagagagt gaaatcaact
    22981 atctgctgaa agtgtataac gcgcacttta aaaaacagct tagccgtgac gatatcgtct
    23041 ggacctactc cggtgtgcgt ccgctgtgtg atgatgagtc cgactcgccg caggctatta
    23101 cccgtgatta cacccttgat atccatgatg aaaacggcaa agcaccgctg ctgtcggtat
    23161 tcggcggtaa gctgaccacc taccgaaaac tggcagaaca tgcgctggaa aaactgacgc
    23221 cgtattatca gggtattggc ccggcgtgga cgaaagagag cgtgctgccg ggtggtgcca
    23281 ttgaaggcga ccgcgacgat tacgcagctc gtctgcgccg tcgctatcca ttcctgactg
    23341 aatcgctggc gcgtcattac gcacgcactt acggcagcaa cagcgagctg ctgctcggca
    23401 atgcgggggc gataagcgac ctcggggagg atttcggtca tgagttctac gaagcggaac
    23461 tgaaatacct ggtggatcac gaatgggtcc gccgcaccga cgatgccctt tggcgtcgca
    23521 caaaacaagg catgtggctg aatgcggatc aacaatctcg tgtgagtcag tggctggtgg
    23581 aatatacgca gcagaagttg tcgctggcgt cgtaaggatg atgcccggtt gaagtgcaac
    23641 cgggctattt ggattcctta gactattcat tgtaaataat tgaataacgg cccctgagct
    23701 aaaatcgcca aacttaagca cgttacccaa tcgccccact tcttcctctg gtttctattt
    23761 tttctgcacc aatggcaata atatcccaat gcaaaaccaa gctgtgcact aatcgggccg
    23821 acaaaatcag tccaaggctg cggccaaaaa ggggaaaaat tcaggggagg ccagacaaac
    23881 gtcagaaaga aatttcggat attttccagc aacgctgatt tctctggaga aatataaaga
    23941 atgaaattcg agagaattaa ccagaaatag accggcgaaa agaccagcca gcaatgcagt
    24001 ctgtttttta attcaggagg cgttctgcgg gagaattgcc aaccgatgcc agccattaca
    24061 c
//
LOCUS       DAJVUP010000052        23657 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.052, whole genome shotgun sequence.
ACCESSION   DAJVUP010000052 DAJVUP010000000
VERSION     DAJVUP010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23657
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.052"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1216)
                     /locus_tag="OQQ75_001869"
     CDS             complement(<1..1216)
                     /locus_tag="OQQ75_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc8 family transposase"
                     /protein_id="HCS1976225.1"
                     /translation="MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQL
                     DKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPF
                     PESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
                     DTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG
                     WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNA
                     GSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHA
                     RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLES
                     WLREKMKTLFFGS"
     gene            complement(1266..1613)
                     /gene="tnpB"
                     /locus_tag="OQQ75_001870"
     CDS             complement(1266..1613)
                     /gene="tnpB"
                     /locus_tag="OQQ75_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019104956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1976226.1"
                     /translation="MIPLPSGTKIWLVAGITDMRNSFNGLAAKVQTALKDDPMSGHIF
                     IFRGRSGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTQAQLAMLLEGIDW
                     RQPKRLLTSLTML"
     gene            complement(1610..1990)
                     /locus_tag="OQQ75_001871"
     CDS             complement(1610..1990)
                     /locus_tag="OQQ75_001871"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HCS1976227.1"
                     /translation="MQKNVTPGRRKGCPNYPPEFKQLLVAASCEPGISISKLALENGI
                     NANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAAAEQPESLAEDPETLSISCEVTFR
                     HGTLRFNGNVSEKLLTLLIQELKR"
     gene            complement(2345..2779)
                     /locus_tag="OQQ75_001872"
     CDS             complement(2345..2779)
                     /locus_tag="OQQ75_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001556209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HCS1976228.1"
                     /translation="MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQR
                     GNDGQPPWFEHDQMTVAEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVM
                     CDEDYEGEKCCPRCGTGVYSRAWGRQEVPSEDARADNPLQRL"
     gene            complement(2767..3168)
                     /locus_tag="OQQ75_001873"
     CDS             complement(2767..3168)
                     /locus_tag="OQQ75_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004020115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976229.1"
                     /translation="MYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQY
                     ETELPWFEHTDDRLTEHGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASWHCRQC
                     HHDYYGEQYCTHCQTGGFSIPRTTQEEICEF"
     gene            complement(3428..3997)
                     /locus_tag="OQQ75_001874"
     CDS             complement(3428..3997)
                     /locus_tag="OQQ75_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000221568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus Gp2 family protein"
                     /protein_id="HCS1976230.1"
                     /translation="MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRLPDVPAATD
                     AAVISRFINALKARIDAYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVN
                     RDTWCRAGDYRAPESLAGMIKQAWCSALGVDVGCHATLVHFPAWPAVWLARNDDTGFQ
                     QVLERADYLAKEHTKAHCTGERNFGCSRS"
     gene            complement(4742..4885)
                     /locus_tag="OQQ75_001875"
                     /pseudo
     CDS             complement(4742..4885)
                     /locus_tag="OQQ75_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000453335.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin activation protein"
     gene            complement(5219..5485)
                     /locus_tag="OQQ75_001876"
     CDS             complement(5219..5485)
                     /locus_tag="OQQ75_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000840368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976231.1"
                     /translation="MAEPYRYTGWLLRKDASARTRDKEGIVFVRTGREAGVLIIAELF
                     SEVVTVSQPVPGEEETDITDGIRLSDWYYKYKKSSESNVKDLPE"
     gene            5626..5832
                     /locus_tag="OQQ75_001877"
     CDS             5626..5832
                     /locus_tag="OQQ75_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS1976232.1"
                     /translation="MATPVSLMDDQMVDMAFITQLTGLTDKWFYRLIRDGAFPAPIKL
                     GRSSRWLKSEVEAWLQARIAQPRP"
     gene            5927..6529
                     /locus_tag="OQQ75_001878"
     CDS             5927..6529
                     /locus_tag="OQQ75_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976233.1"
                     /translation="MKQQYQTRYEWLHESYQKWLTGFTRHAVSWGVCHPNIYYFHNLT
                     PGWVSFNGEKPEIAIVPQSLHRLIYGPDKRATPPLDDDLIVNLCTSEHLLVHHPMLEG
                     ILLSECERLRQRSLANKLISLFRQFGGTELRLKLVWLCWLDLMTGNSLEDWKENLKRK
                     SEKELEEWIINRQRQSAALTDLMDQYVLLAYRTTVDDSRN"
     gene            7729..8646
                     /locus_tag="OQQ75_001879"
     CDS             7729..8646
                     /locus_tag="OQQ75_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976234.1"
                     /translation="MVQKILSDKVMNERTNAYYSYYLGERNISVLPLNVYDPPERFIA
                     YIKKNRENLNITLSDFELEQIISGMRLKALAFLVPLEKISWIAGSERACLFSWYLLMQ
                     FIQNNRAKISADLLQKNKLYLKEEYLEGNAFPSDSSTQFRQILRVLDILSDKNLRDEW
                     IIQTKDRWMRAFKSKSPFSYLLPENEHECIWTWNYLKGKNIALEKLASFPGSADIYHA
                     IHLSFDIWVTCPLTSPDDIKNFRNSFNKAKAQRKYKKMQEDKVNVQFFLDAETRAQLK
                     ELSRVRRLSTGEMLHDLIVEEYKRYRHSR"
     gene            8731..9603
                     /locus_tag="OQQ75_001880"
     CDS             8731..9603
                     /locus_tag="OQQ75_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase family protein"
                     /protein_id="HCS1976235.1"
                     /translation="MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGK
                     SGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDA
                     EYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQADKTEPC
                     HEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALP
                     DHAASPLMTRLQDELRTESVRGQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDT
                     VVSVARAVWNWIFF"
     gene            9975..12821
                     /gene="ag43"
                     /locus_tag="OQQ75_001881"
     CDS             9975..12821
                     /gene="ag43"
                     /locus_tag="OQQ75_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin Ag43"
                     /protein_id="HCS1976236.1"
                     /translation="MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVVLSLAA
                     VTSVPALAADTIVQAGETVNGGTLTNHDNQIVLGTANGMTISSGLEYGPDNEANTGGQ
                     WIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHE
                     GGIATGTVINEKGWQTVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINE
                     NGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQ
                     IIKEGGLADFTTVNQKGKLQVNAGGTATHVTLKQGGALVTSTAATVLGSNRLGNFTVE
                     NGKADGVVLESGGRLDVLEGHSAQKTRVDDGGTLAVSAGGKATGVTMTSGGALIADSG
                     ATVEGTNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGS
                     LSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPVTFHK
                     LTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQ
                     GIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTS
                     MLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSY
                     GFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL
                     THTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQL
                     HYTWQGLTLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSTK
                     HRVSELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARV
                     RENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF"
     gene            12892..13050
                     /locus_tag="OQQ75_001882"
     CDS             12892..13050
                     /locus_tag="OQQ75_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001550547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF905 family protein"
                     /protein_id="HCS1976237.1"
                     /translation="MPGCTSRLLPEGPFSREQAVAVKTAYRNVFTEDDQGTYSRLVIR
                     NAEGQLRW"
     gene            13205..14023
                     /locus_tag="OQQ75_001883"
     CDS             13205..14023
                     /locus_tag="OQQ75_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HCS1976238.1"
                     /translation="MRLASRFGYANQIRRDRPLTHEELMHYVPSIFGEDRHTSRSKRY
                     AYIPTITVLESLQQEGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIIL
                     LNSHDGTSSYQMLPGYFRFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFD
                     RIEEKRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWS
                     AYQTIQENMLKGGISGRSAKGKRIHTRAIHNIDTDIKLNRALWVMAETLLESLR"
     gene            14365..14838
                     /locus_tag="OQQ75_001884"
     CDS             14365..14838
                     /locus_tag="OQQ75_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein"
                     /protein_id="HCS1976239.1"
                     /translation="MKTLSQNTTASACAPETGLQQLVATPVPDEQRISFWPQHFGLIP
                     QWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGN
                     RAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID"
     gene            14854..15330
                     /locus_tag="OQQ75_001885"
     CDS             14854..15330
                     /locus_tag="OQQ75_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RadC family protein"
                     /protein_id="HCS1976240.1"
                     /translation="MQQLSFLPGNMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAR
                     EWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAA
                     VVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL"
     gene            15393..15614
                     /locus_tag="OQQ75_001886"
     CDS             15393..15614
                     /locus_tag="OQQ75_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF987 domain-containing protein"
                     /protein_id="HCS1976241.1"
                     /translation="MRIITRGEAMRIHQQHPASRLFPFCTGKYRWHGSAEAYTGREVQ
                     DIPGVLAVFAERRKDSFGPYVRLMSVTLN"
     gene            15777..16151
                     /locus_tag="OQQ75_001887"
     CDS             15777..16151
                     /locus_tag="OQQ75_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system YeeU family
                     antitoxin"
                     /protein_id="HCS1976242.1"
                     /translation="MSDKLSGITHPDDNHDRPWWGLPCTVRPCFGARLVQEGNRLYYL
                     ADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSGELNPRYQHTVTLYAKGLTCEAD
                     TLGSCGYVYLAVYPTPAPATTS"
     gene            16198..16572
                     /locus_tag="OQQ75_001888"
     CDS             16198..16572
                     /locus_tag="OQQ75_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin"
                     /protein_id="HCS1976243.1"
                     /translation="MKTLSDTHVREVSRCPSPVTIWQTLLIRLLDQHYGLTLNDTPFV
                     DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATG
                     LMTRDNYRTVNNITLGKYPEAK"
     gene            16569..17060
                     /locus_tag="OQQ75_001889"
     CDS             16569..17060
                     /locus_tag="OQQ75_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309434.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976244.1"
                     /translation="MMKLALTLEADSVNVQALNIGRIVVDVDGIELAELINMVCDNGY
                     SLRVVDESDQTSAECTPPFATLTGIRCSTAHITETDNAWLYSLSHQTSDFGESEWIHF
                     TGSGYLLRTDAWSYPVLRLKRLGLSKTFRRLVVTLIRRYGVSLIHLDASAECLPGLPT
                     FDW"
     gene            17072..17269
                     /locus_tag="OQQ75_001890"
     CDS             17072..17269
                     /locus_tag="OQQ75_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976245.1"
                     /translation="MKSLTTETALDILIAWLQDNIDCGSGIIFDNDEDKTDSAALLPC
                     IEQAREDVRTLRHLQLLHQNR"
     gene            17354..17914
                     /locus_tag="OQQ75_001891"
                     /pseudo
     CDS             17354..17914
                     /locus_tag="OQQ75_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309436.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
     gene            17986..18990
                     /locus_tag="OQQ75_001892"
     CDS             17986..18990
                     /locus_tag="OQQ75_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001179707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISSfl8 family transposase"
                     /protein_id="HCS1976246.1"
                     /translation="MQNITLIGIDLGKHSFHIHCQDKSGKALLRKKFTRTKLMQFLAT
                     CPPSVVVMEACAGAHFMARCISDFGHETKLISPQFVRPFVKSNKNDFVDAEAICEAAS
                     RPSMRFVQPRTETQQAMRALHRVRESLIRDKVKTTNQIHGFLLEFGISLPIGDAVIKR
                     LSLVLAEHEIPEYLSRLLVRLHTHYFYLVEQIAELESELSQSINADDTAQRIMTIPGV
                     GPITASLLSSQLGDGKQFSCSRDFAASTGLVPRQYSTGGKSTLLGISKRGDKNLRRLL
                     VQCARSFIMRLERKHGKLAEWVREQLNKKHSNVVTCALANKLARIAWAITTQKKEYQA
                     "
     gene            19272..19553
                     /locus_tag="OQQ75_001893"
                     /pseudo
     CDS             19272..19553
                     /locus_tag="OQQ75_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309436.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
     gene            complement(19703..19790)
                     /locus_tag="OQQ75_001894"
     tRNA            complement(19703..19790)
                     /locus_tag="OQQ75_001894"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19754..19756),aa:Ser,seq:gga)
     gene            20024..20962
                     /gene="ghrA"
                     /locus_tag="OQQ75_001895"
     CDS             20024..20962
                     /gene="ghrA"
                     /locus_tag="OQQ75_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415551.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrA"
                     /protein_id="HCS1976247.1"
                     /translation="MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALV
                     WHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEY
                     AVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHWEDFTIGILGAGVLGSKVAQSLQTWRF
                     PLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPD
                     GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHV
                     AAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY"
     gene            21017..21754
                     /gene="ycdX"
                     /locus_tag="OQQ75_001896"
     CDS             21017..21754
                     /gene="ycdX"
                     /locus_tag="OQQ75_001896"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding phosphatase"
                     /protein_id="HCS1976248.1"
                     /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM
                     EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE
                     PVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS
                     SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPER
                     ILNVSPRRLLNFLESRGMAPIAEFADL"
     gene            21778..22332
                     /gene="ycdY"
                     /locus_tag="OQQ75_001897"
     CDS             21778..22332
                     /gene="ycdY"
                     /locus_tag="OQQ75_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone YcdY"
                     /protein_id="HCS1976249.1"
                     /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ
                     DELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPL
                     ADTPADHIGTLLLAASWMEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
                     RTMAPLTRDAISAMWDELEEDSEE"
     gene            22434..22925
                     /locus_tag="OQQ75_001898"
     CDS             22434..22925
                     /locus_tag="OQQ75_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 domain-containing protein"
                     /protein_id="HCS1976250.1"
                     /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ
                     GGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLS
                     FVPGTFIGACATFAGQGDWKLVLPSLALGLVFGYAMKNSGLWLAARSAKTAHREQEIK
                     NKA"
     gene            complement(22989..23657)
                     /gene="csgG"
                     /locus_tag="OQQ75_001899"
                     /pseudo
     CDS             complement(22989..23657)
                     /gene="csgG"
                     /locus_tag="OQQ75_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309441.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgG"
BASE COUNT         5677 a         6156 c         6126 g         5698 t
ORIGIN      
        1 cagagccgaa gaacagggtc ttcatctttt cacgcaacca gctttccagg gatttcaaca
       61 gcggtttcgt ttttcgctga cgttcagcaa gccgctgctc tgccggcatt ccccttatat
      121 ccgcctctat ggcgtacaac tgaccgatct gctccagggc ttcttccgtc agtgctgacg
      181 ggatgcggac gtgcacatcg tggatctttc ggcgggcatg agcccagcag gcagcttccg
      241 ttatcccacc attgcgatac agctcgttga acccggcgta cgcatccgct tgcagcacac
      301 cgctgaagca agcaagatga gtctgcggat ggatgctttt tctgtccggg ctgtaagcga
      361 accacactgc aggtgccaac gctgacccgg cattgcggtc atcacgaaca tacgcccaca
      421 accgcccggt cttcgtcttc ttattacccg gcagcagtac ctggaccggg gtatcatcgg
      481 catggagttt gccgtcagtc atgacatagc catgaagcgc ctcttccagc ggagacagca
      541 gccggcagca tgcatccacc cagcccgaca gcagtgaacg gctcagctcc acaccttgcc
      601 ggccgtatat ttctgactgg caatacagcg gggtgtgctc tgcatacttc gaggtcagca
      661 cgcgggccag cagccccggt ccggcgatac cccgctcgat gggccgcgaa ggtgcaggtg
      721 cctgcacgat ggtatcgcac tgagtacagg catgtttttc ccgtaccgtc cggataaccc
      781 ggaaggcgct acgcatcaac tccagctgtt cggcggtatc ctcgcccaga tagctcagtg
      841 aaccgccgca gttcgggcag cacggcgccg caggcaacag tcgcttttcg tcacggggta
      901 gtgattcagg gaacggctta cgggtgcggg tctgacgcaa cggacgctgt actgccgggt
      961 catacaccct accagtcagc gtatcgctct ctttctgaag ccggttcaga tcggcttcca
     1021 tttgtgcgat acggcgggag actttttcgg aacgactgcc gaagttcatc cggcggagtt
     1081 tatccagctg cgcctgcaga tggtctattt cgcgctcccg gttgctcagc ttttcctgca
     1141 gggcgtggat cagcgcttcc tgttcggcca ggcgctgttt cagcaggaag atgtcgtcag
     1201 aagagatgtc gttcataagc ccgtatttta ccgggcttat tctgtgacaa ccaggataaa
     1261 gagatttaca gcatggtcag ggaggtcagc agccgcttgg gctgtcgcca gtcgatacct
     1321 tccagcagca tcgccagctg cgcctgcgta aggaacactt tgccatcacg ggctgacggc
     1381 caggcgaagc gcccacgctc cagccgtttg gtcaggaggc acagtccgtc gccggtggac
     1441 cacagcagtt taacctgact gccgctgcgg ccccggaaaa tgaaaatatg gccggacatg
     1501 ggatcgtctt tcagcgccgt ttgtactttc gcagccaggc cgttgaagct atttctcata
     1561 tcggtgatac cggcaaccag ccaaattttg gtcccggaag gtaacgggat catcgcttca
     1621 gttcctgtat cagcagagtc aggagctttt cgctgacatt gccattgaag cggagcgtcc
     1681 cgtgccggaa cgttacctca cagctgatac tgagggtttc cgggtcctct gcgagcgatt
     1741 ctggctgttc ggcagctgca tcgagagtca caggaagtag ctgggggctc tctgaagaag
     1801 gtaatagcag ctttccctcg cgccattgtt gtcgccattt gaacaacaga ttggcgttaa
     1861 tgccattttc aagagcaagt tttgagatgg atatcccggg ttcacaggag gcagcaacga
     1921 gcagctgttt aaattcggga ggataattag ggcagccttt tcgcctgccg ggagtcacat
     1981 ttttctgcat atctgacact ttggttccca ctacttattt ggtggacacc actttgtcta
     2041 attcgtcaga ttctgaccag acggttcagg ctgtacgctt accactattt tatccctgtt
     2101 gaatttggtt aagccggtgc agacgcgccg ggaaacgcac acctgaaccg gcacaataaa
     2161 atacaataca accccctgtt actggagata cgaatggaat gacgaggcag cctgtcagtc
     2221 acagggggct gttggcataa aatcaacgga aaggccacca acaccggaat taagctccac
     2281 agtccccgca ctggcaatcc attcccggga aaggcatcac cgcaaactgc tccggaggca
     2341 accattacag cctctgtaac ggattatcag ccctggcatc ttccgacggc acctcctgcc
     2401 gcccccacgc cctgctgtat accccggtac cgcagcgtgg gcagcacttt tccccctcat
     2461 aatcttcgtc acacatcaca caaaaccact ttctcacctt caccgtataa tccggaaccg
     2521 tcatgccctg cagatgcaaa cgacgggcct ctttctctgc cgggtcaagc caggtacatc
     2581 gcagcaggat tttttcagcg acagtcatct ggtcatgttc aaaccacggt ggttgtccgt
     2641 cattgccccg ctgaagtgtt aacgggcatc cacaggacac acagcacaaa acgtcctgtc
     2701 ggttgtgctt cgcagcttct ttcgccgtaa caaaatggcc tttgctgtca ttcgccatat
     2761 aacagttcag aattcgcata tttcctcctg agttgtccgg ggaatactga atcctccggt
     2821 ctggcagtgt gtgcagtact gctccccata ataatcgtgg tgacattgtc tgcagtgcca
     2881 gctggcttta cgcaccacgg gtaaggcatc cggtacgaat tgctgcagac gtttaatcaa
     2941 ctgtatttct ctgcgctccg gcctgacata agggcactgt tgaccgtgct ctgtcagcct
     3001 gtcgtcagtg tgttcaaacc agggaagttc agtttcgtat tgcggatggt atctgagtgc
     3061 actgccacac aagtggcagg tgtagttagc ataaggtgcg gcctgtgcag tacgggcgcc
     3121 cgtcagacgt ccgttgccat caagagcgat aaaggatttt gcgtacatag tcatatacct
     3181 cagccgccag acgacacgca ggcaacagcc gtcccggtac gggcagcgtg gtcagggtgt
     3241 gaatggcggt tcagttaaaa tctggactgg agtttgggta aagcaggctg gttgctgtta
     3301 cagcactgtg gttgtcacac aatggaacac tgacgtaaaa aacagtcagt gggcgagtgg
     3361 atacatcgtt gccgccagac aacaacccat acttttggtt tgccggatat tggcgcgcca
     3421 gtcgtgctca actccggcta cagccaaaat tgcgctcacc ggtgcagtga gctttggtat
     3481 gctccttcgc cagatagtca gcacgttcca gcacttgctg aaagccggtg tcatcattac
     3541 gcgccagcca caccgccggc caggccggaa aatgcaccag cgtggcatgg cacccgacat
     3601 ccactcccag ggcactgcac cacgcctgtt taatcatccc ggccagagac tccggagcgc
     3661 ggtaatcacc ggcacgacac caggtatccc ggttgaccag cagcatcagg tgatagtgtt
     3721 ttttaccttt gcactcccca aactcccggg cccagacgta atgcagggtt gtgggatgca
     3781 cgcgtttacc ttcccgatgc ttacgtttct ggtaagcgtc gattcgggct ttcagggcat
     3841 tgatgaagcg ggatatcaca gctgcgtccg ttgctgccgg tacatccggg agacgcaggt
     3901 caacccgcaa tgccgtcagg cggggatgaa cattcagtgc gtgccgcacc gtctcacgaa
     3961 tacgttgctg ccagaagggg ttgtatttgt aggtcatggt taaatctccg tatggttcat
     4021 acggaatagc cacgtcgtaa aaaatacgca gagtccctga agtgacctcc ggcaggacac
     4081 tgtctcaggc actctgtgat aacccgaacg gtcgtctccg gactgacggt tgaattttca
     4141 gcgtcgtttt ttaatgtaaa aaaccggtta cgggtaaggc tgtgaggagg gagtgatggt
     4201 gatacgcaaa aagaagtgca gggactgtgg aaacgcgatt actcataata cagtgtgttg
     4261 cccgtattgt ggttctgtcg accccttcgg ctactaccgg aatacagacc gtatcgttac
     4321 catactgctg gcgctgatta ttgtggtcct gctgactact gtcagcgtca gtgtgtgtat
     4381 actgtgtagc tggtgagata acggttcatg tatcccctga gctgacagtg taccgtgtat
     4441 attaagcgta accgacaggt tctccttcat accatattaa attttccagg gattgccgct
     4501 gccttatttc gtcccataca ggaaaactca tctgggtttc tgacaaatac gcgaaactca
     4561 cagcccctca atatcaacca cacgttgtaa gccggtaata cctgaaaatc agcctattac
     4621 cgcccacgcc tccggcacca ttcccttttg atttcgaatt ctttgttgtc gctataccgc
     4681 ttaatgttcc cggtcctccg gtgcagataa caccggagtc atcgtagcgc tgcttcaata
     4741 ttcaggtgac gtatttccag acggaagccg gcgcgcgatc gtaaagtttg ttcattgtca
     4801 gttctgccag ccggttgtca acggcagagt taaaggcttc cagctccgca agggtaagtt
     4861 tataacgcgt gtgggaattc acttttcccg cgtctcctga cgtattacgg gctgccactt
     4921 acctggtgtc ccgcaataca gccttagtgt tccgttatcg gggatccgga cgcaccgcaa
     4981 caaccgggga agtatttctg gtttagagca gtgtcaagag ggatttctca gcccctcact
     5041 caccggctca gtctcagggc aggagcatta atacgctcag ttcatgtctt atacaggaat
     5101 gggcacaggg ggagctggcg tgtcactgct gattttacgc atcagcgttc atgtatctgc
     5161 actctgatac atgaacgatt cacagcgctc tgttaccgga gagatttact ctcttagctt
     5221 actctggcaa atcctttacg ttactctctg atgacttctt atatttataa taccaatcag
     5281 acagccttat cccatcggtg atatcagtct cctcctcgcc aggaacgggc tgactcactg
     5341 taactacctc cgaaaacaac tctgcaatta tcagaacgcc tgcttctctc cctgtcctca
     5401 cgaaaactat cccctcttta tcgcgcgtgc gtgcggaagc atcttttcgc aacaaccacc
     5461 cggtataccg gtacggctca gccaccgcaa cctccccgtt tatctcctgg cggtcacatt
     5521 cccgattatt ttttacgttt ctccccggtt gttatgccgg tgaaggtggc gcgctgtttt
     5581 catgaccaca ccggctggtt taacaacatc cggaggaaca ttctcatggc taccccagtt
     5641 tcactgatgg atgaccagat ggtcgacatg gcatttatca ctcaactgac cggcctgaca
     5701 gataagtggt tttacaggct catcagggat ggggcctttc cggctcccat caagctgggc
     5761 cgcagctccc gctggctgaa aagtgaagtg gaagcctggc tacaggcgcg tattgcacag
     5821 ccccgcccgt aatttctgac cgttatccgt tcacccgcag cagacgtaat ccccggcctg
     5881 ccggcggcat tctgctgcct gttatatccc cgtgaggaat atgaaaatga aacaacagta
     5941 tcagacccgc tacgaatggc tccacgaaag ctaccagaaa tggctgaccg gcttcacccg
     6001 gcacgccgta tcctggggcg tgtgtcatcc gaatatctac tacttccata atctgacgcc
     6061 cggttgggtg tcattcaatg gtgaaaaacc ggagattgcc atcgtacccc agagcctgca
     6121 ccggctgatt tatggccctg acaaacgggc cacgccgccc ctggatgatg atctgatagt
     6181 gaatttatgc accagtgaac atctgctggt tcatcatccg atgctggaag gcattctcct
     6241 gtctgaatgt gaacgtctga ggcagcgttc tctggcaaat aaactgatca gcctcttccg
     6301 tcagtttggt ggcacggagt tgcgcctcaa actggtctgg ctttgctggc ttgatttaat
     6361 gaccggaaac agccttgaag actggaaaga gaacctgaaa cggaaatcag aaaaagagct
     6421 ggaggaatgg atcatcaacc gtcagaggca gagcgcagca ctgacggatc tgatggatca
     6481 gtacgtgctc ctggcatacc gcacaacggt tgacgatagc cgcaactgat gccggttgct
     6541 tccggaaggt gtgacaaaat acggaaatga tgatgctccc ggcccccatg ctcacctgca
     6601 gagcgtgttc gtcgtcatca tactgagcca tgacgggcgt cttaagggca tcctgtcatt
     6661 gctgagcagg caacaccacc agaggagcca cggacaggga tgttctttac agcccgatac
     6721 acgccaggtt ctcagcagac tgaatgtgca ggtgcggtta ttcaccagaa atggcatgct
     6781 gcggtacata cccatcctgg tgacaatatg tacgtggcga cagcgatccc ggcactgtgg
     6841 aagagactca ctcagcctgc aggatattct ttccggcatc cgggaatgtc cgcctgaatg
     6901 caaacaggat gatatttgaa tccgtaatac tgttctttca tcataaataa tttatgcaga
     6961 tacagttaac cgttacagta gccggtttgt tttaccggga aataatatcc gtcagactga
     7021 taccggaaca tatctgaaac acgttatgat gttttgttat cagaaatgtt gtatattctt
     7081 atccgtggcg acagtttaat gccctctggt atcacctgat aatgtatatc ctgcgatgat
     7141 tcgttatatt tacgggacac gcctcttttc attgtgctcc ttttcagact tcattttccg
     7201 taagtgttcc ccggcataaa ggaggtacct ttctggcgtt tataactctc tttatcggtg
     7261 acgccggtaa tacagggaat accacaccga caaacgaggt attaacagac gatatttcag
     7321 tgtccataat ttttctgtcc ggttaaataa cgtcagtctg ctgccctctg actgtaatca
     7381 tcaaagccgg aatgcatacc gggttacaac gtaaaaaaag tgatgctggc ccccggtgca
     7441 gctggcgggc gaaacatgtt tacctttcaa taccccctgt ctgcagtctc cactcttcca
     7501 tcctcttaag ctacgtcggc cacatgagtg cacttccatg ataacaggta ttcctgtcag
     7561 cataacgaag ccggttacct tcccttcctc ctgcatttcc tgtcagaatg actatacagc
     7621 gcgcagattg cctttttatt gaccatctta atataccgtt ataaacttct ttttatcata
     7681 ttattatcac cttattatgt ttaattttta agcagtcgga gaaagaggat ggttcagaaa
     7741 attttgtcgg ataaggttat gaatgaaaga acaaatgcgt attactctta ttatcttgga
     7801 gagcgtaata tctccgtact gccccttaat gtttatgatc ccccggaacg ttttatcgct
     7861 tacataaaaa aaaacagaga aaatctgaac atcacacttt cagattttga acttgaacaa
     7921 ataatttctg gtatgcgtct gaaggccctg gccttcctgg tccccctgga aaaaatatcc
     7981 tggatcgcgg gcagtgaacg cgcatgctta ttttcctggt atctgttgat gcagtttatc
     8041 cagaataaca gggcaaaaat aagcgcagac ttgcttcaaa agaataaact gtatcttaaa
     8101 gaagagtatc tggaagggaa tgccttcccg tcggactcat cgacacagtt cagacaaata
     8161 ctcagagttc tcgatattct ttctgataag aatttgcggg atgagtggat aatccagacc
     8221 aaagacagat ggatgcgggc atttaaatca aagagtcctt tcagttacct cctcccggag
     8281 aacgaacatg aatgcatatg gacatggaat tatttgaagg gaaaaaatat tgcactggaa
     8341 aaactggcca gttttcctgg ttctgctgat atttaccacg caattcacct ttcatttgac
     8401 atatgggtta cctgtccact cacctcacct gacgatataa aaaatttcag aaacagtttc
     8461 aataaggcca aggcgcagcg caagtacaaa aaaatgcagg aagataaagt caatgtacag
     8521 ttttttcttg acgcagaaac cagggcgcag ctcaaagaat tatcgagggt cagaagactc
     8581 agtaccggcg aaatgctgca tgacctgatt gttgaagagt ataaaaggta ccgacattcc
     8641 agataatttc agacatatat tatctccgtg agtcccccgc cacctttccg gtgtgcgggg
     8701 gttttgtctt ttttcaccgg gaatacatgt atgaatccgt ctgatgccat tgaggcaatt
     8761 gaaaaaccgc tctcctccct gccttactca ctttcccgtc acatcctgga acatctgcgc
     8821 aaactcacca gtcacgaacc cgtgattggc attatgggta aaagcggggc cggtaaatcc
     8881 tcactctgta atgcactgtt tcagggggag gtcactccgg tcagtgatgt tcacgccggc
     8941 acccgggaag tgcagcgttt ccgtctgagt ggccatggtc acagcatggt tatcactgac
     9001 ctgcccgggg tgggcgagag ccgggacaga gatgcagagt atgaagccct gtaccgtgac
     9061 attctgcctg aacttgacct ggtactgtgg ctgattaaag ccgatgaccg tgccctgtct
     9121 gtggatgagt atttctggcg acacatcctg caccggggac atcagcaggt gctgtttgtg
     9181 gtgacgcagg ccgacaaaac ggagccctgc catgaatggg atatggccgg tattcagcct
     9241 tctcccgcac aggcacagaa tattcgcgaa aaaacggagg cggtattccg tctgttccgg
     9301 cccgtacatc cggttgttgc cgtatcggcc cgcaccggct gggaactgga tacgctggtc
     9361 agtgcgctaa tgacagcact tcccgaccat gccgccagtc ccctgatgac ccgcctgcag
     9421 gacgagctgc gcacggaatc tgtccggggt caggcccgtg aacagtttac cggtgcggtg
     9481 gaccggatat ttgacacggc ggagagcgtc tgtgttgcct ctgttgcccg tacggttctg
     9541 cgtgccgtcc gtgacacggt ggtctctgtt gcccgcgctg tatggaactg gattttcttc
     9601 tgaacagtct gccagggaaa tgcctgataa cattacgtta accaactgaa aacatgacac
     9661 aaacccctca tactcctcct gtttctcttg cgtgaccgcc ttgtcgttaa tagaataaaa
     9721 ctatcgataa aacagatatc gatcgttgct atcgatcgtt tatagtggtt aatggtctgc
     9781 gaaaaggcag ctgaatctct tcatcatgca gaacggaatt gcacacaacg gactgatact
     9841 tctctggcgg atgagagagg ggaagcattt atgtccggga aaaaccactt tatctgacca
     9901 tgctgttttg tacctgccgg tatccacttt tgtgggtacc ggctttttta ttcaccctct
     9961 gtaaggaaaa gctgatgaaa cgacatctga acaccagcta caggctggta tggaatcaca
    10021 ttacgggcac cctggtggtg gcttccgaac tggcccgctc acggggaaaa cgcgccggtg
    10081 tggcggttgt gctgtctctt gctgctgtca catcagtccc ggcactggct gctgacacga
    10141 ttgtacaggc gggagaaacc gtgaacggcg gaacactgac aaatcatgac aaccagattg
    10201 ttctcggtac ggccaacgga atgaccatca gtagcggtct ggagtatggg ccggataacg
    10261 aggccaatac cggcgggcaa tggatacaaa atggcggtat cgccaacaac actactgtca
    10321 ccggtggtgg tcttcagaga gtgaatgccg gaggaagcgt ttcagacacg gttatcagtg
    10381 ccggaggcgg acagagcctt caggggcagg cagtgaatac cactctgaac ggcggtgagc
    10441 agtgggtaca tgaaggcggg attgcaacgg gtaccgtcat taatgagaag ggctggcaga
    10501 ccgtcaaatc cggcgcaatg gcaaccgaca cggttgtgaa taccggcgcg gaagggggac
    10561 cagatgcaga aaatggtgat accgggcagt ttgttcgcgg aaatgccgta cgtaccacta
    10621 tcaatgaaaa tggtcgtcag attgtggctg ctgaaggaac agcaaatacc actgtggttt
    10681 atgccggcgg cgaccagacg gtacacgggc atgcgctgga taccacactg aatggcggtt
    10741 accagtatgt gcacaacggc ggtacggcgt ctggcactgt tgtaaacagt gacggctggc
    10801 agattatcaa ggaaggtggt ctggcggatt tcaccaccgt taaccagaaa ggcaaactgc
    10861 aggtgaacgc cggtggtacc gccacacatg tcaccctgaa acagggtgga gcactggtta
    10921 ccagtactgc ggcaacggtt cttggcagca accgtctggg caatttcacg gtggaaaacg
    10981 gtaaggctga cggagttgtt ctggagtccg gcggtcgcct ggatgtactg gaaggccatt
    11041 cagcgcagaa aacacgggtg gatgacggcg gaaccctggc agtgtctgcc ggtggtaagg
    11101 caacaggtgt caccatgaca tccggtggtg ccctgattgc agacagtggt gccactgttg
    11161 aggggaccaa tgccagcggt aagttcagta ttgatggcac atccggtcag gccagcggac
    11221 tgctgctgga aaatggcggc agctttacgg ttaatgccgg aggactggcc agcaacacca
    11281 ctgtcggaca tcgtggaaca ctgacgctgg ctgccggggg aagtctgagt ggcagaacac
    11341 agctcagtaa aggtgccagc atggtactga atggcgatgt ggtcagtacc ggcgatattg
    11401 ttaacgcagg ggagattcgc tttgataatc agacgacacc ggatgccgcg ctgagccgtg
    11461 ctgttgcaaa aggcgactcc ccggtaacgt tccataaact gaccaccagt aacctcaccg
    11521 gtcagggtgg caccatcaat atgcgtgttc gccttgatgg cagcaatacc tctgaccagc
    11581 tggtgattaa tggtggtcag gcaaccggca aaacctggct tgcgtttaca aatgtcggaa
    11641 acagtaacct cggggtggca acctccggac agggtatccg ggttgtggat gcacagaatg
    11701 gcgccaccac agaagaaggt gcgtttgccc tgagtcgccc gcttcaggcc ggcgccttta
    11761 actacaccct gaaccgtgac agcgatgaag actggtacct gcgcagtgaa aatgcttatc
    11821 gtgctgaagt ccccctgtat acatccatgc tgacacaggc aatggactat gaccggattc
    11881 tggcaggctc ccgcagccat cagaccggtg taaacggtga aaataacagc gtccgtctca
    11941 gcattcaggg cggtcatctc ggtcacgata acaacggcgg tattgcccgt ggagccacgc
    12001 cggaaagcag cggcagctat ggcttcgtcc gtctggaggg tgacctgctg agaacagagg
    12061 ttgccggtat gtctctgacg acaggggtgt atggtgccgc aggccattct tccgttgatg
    12121 ttaaggatga tgacggttcc cgcgccggca cggtccggga tgatgccggc agcctgggcg
    12181 gatacctgaa tctgacacac acgtcctccg gcctgtgggc tgacattgtg gcacagggaa
    12241 cccgccacag catgaaagcg tcatcggaca ataacgactt ccgtgcccgg ggctggggct
    12301 ggctgggctc actggaaacc ggtctgccct tcagtatcac tgacaacctg atgctggagc
    12361 cacaactgca ctatacctgg cagggactta ccctggatga cggccaggat aacgccggtt
    12421 atgtgaagtt cgggcatggc agtgcacaac atgtgcgtgc cggtttccgt ctgggcagcc
    12481 acaacgatat gagctttggt gaaggcacct catcccgtga cactctgcgc gacagtacaa
    12541 aacaccgtgt gagtgaactg ccggtgaact ggtgggtaca gccttctgtt atccgcactt
    12601 tcagctcccg gggtgacatg agcatgggga cagccgccgc cggcagtaac atgacgttct
    12661 caccgtcccg gaatggcacg tcactggacc tgcaggccgg actggaagcc cgtgtccggg
    12721 aaaatatcac cctgggcgtt caggccggtt atgcccacag cgtcagcggc agcagcgctg
    12781 aaggttataa cggtcaggcc acgctgaatg tgactttttg ataatcaggt cactctcctt
    12841 caggccccgg tcatcatgac cggggctttt tactttcagg gagcaacaga tatgccgggt
    12901 tgtacatcac gtttattgcc cgaaggccct ttctcacgcg aacaggctgt tgccgtcaaa
    12961 acagcttacc gcaatgtgtt tactgaagat gaccagggaa catattcccg gctggttatc
    13021 cgtaatgctg aaggtcagtt gcgctggtga tgccggaaca cagcttaata ctcagctcgc
    13081 cagttaaggg cttctcagac aataaacgtc attcatttca tctgtcaggc cgcgtcttct
    13141 ccgggagacg cagctttttc atttattaca ccagtaaatc gtaaccaccg ataaggagca
    13201 aattatgcga ctagccagtc gttttggtta tgcgaaccag atacgccgtg accgtccgct
    13261 gacacacgaa gaactgatgc actatgttcc cagtattttc ggtgaagacc ggcatacttc
    13321 ccgcagtaaa cgatatgcgt acattcccac catcaccgta ctggaaagcc tgcagcagga
    13381 aggttttcag ccattcttcg cctgccagac ccgcgtgcgc gacccgggcc gccggggata
    13441 cacaaaacac atgctgcgtc tgcggcgggc cggagagata aacggagaac atgtccctga
    13501 aattattctg ctcaactctc atgacggtac ctccagctac cagatgctgc cgggttactt
    13561 cagattcgtc tgccagaatg gctgcgtctg cggtcagtct ctgggggaag tgcgtgttcc
    13621 acaccgggga aatgtggtgg agaaagttat cgaaggggct tacgaagtgg tgggggtttt
    13681 tgaccggatt gaggaaaagc gtgatgccat gcagtcgctg gtcctgccgc caccggcacg
    13741 ccaggcgctg gcacaggcgg cactgactta ccgttatggt gacgaacatc agccagtcac
    13801 caccgctgac attctgacac cacgacgcag ggaggattac ggtaaagacc tgtggagcgc
    13861 atatcagacc atccaggaga atatgctgaa aggcgggatt tccggccgca gtgcaaaagg
    13921 aaaacgtatc cacacccgtg ccattcacaa catcgacacc gatattaagc tcaaccgcgc
    13981 attgtgggta atggcagaaa cgctgctgga gagcctgcgc tgatgcagca tgtccctgaa
    14041 ggcgtgattc aggcaccaga atcacccgac gccccggagg cgctgccggg gtgtcgttcc
    14101 atttctgatg atgacctgtg cgcctggtgt acccgtctgc tttaccgtcc cggagaaatc
    14161 agtctgtgca gactgagtat acaggcaatg gcatctggcc atccgtctgt gaccggaacg
    14221 gttacgcgta cggctgtccg gaatttcagc cgaatatcat tcatccctga tattaccggg
    14281 tcatcacggt cagtgatgaa cgtgatgttg ccagctcccg acctttactc cctctcattt
    14341 attcacatta caaggatttc atacatgaaa acattgtctc agaacaccac cgcttcggcc
    14401 tgtgcaccgg agactggcct gcaacaactg gttgccactc ccgtccctga tgaacagcgc
    14461 atcagcttct ggccgcagca ttttggcctc attccacagt gggtcaccct ggaaccccgt
    14521 gtcttcggct ggatggaccg tctgtgtgaa gactactgcg gtggtatctg gaatctgtac
    14581 accctgaaca acggcggggc atttatggca cccgaaccgg atgacgatga tgacgaaaca
    14641 tgggtactgt tcaatgccat gaacggtaac cgcgctgaaa tgagcccgga agccgccggc
    14701 attgctgcct gtctgatgac gtacagtcat catgcctgtc gtacggagtg ttatgccatg
    14761 acggtccatt attaccggct gcgggattac gccctgcagc atccggaatg cagcgccatt
    14821 atgcgcatca tcgactgaat ggaggcaggg acaatgcagc agctttcctt tctgcccgga
    14881 aacatgacgc ccggcgagcg cagtctcatt ctgcgggccc tgcaaaccct ggaccgccat
    14941 cttcatgaac ccggcgtggc cttcacctcc acccgtgcgg cacgggaatg gctgattctg
    15001 aacatggcgg gactggagcg ggaagagttc cgggtgctgt atctgaacaa ccagaatcag
    15061 ctgattgccg gtgaaaccct cttcaccggc accatcaacc gtacggaagt tcatccccgg
    15121 gaagtgatta aacgcgccct gtaccacaat gccgctgccg tggtgctggc gcacaatcac
    15181 ccgtccggtg aagtcacacc cagtaaggca gaccggctta tcaccgaacg tctggtacag
    15241 gcactgggcc tggtggatat ccgggtgccg gaccatctga tagtcggtgg caaccaggtt
    15301 ttctcctttg ccgaacatgg tctgctttaa cccgtcacaa ccacatcaca cctgttttca
    15361 cttttatctt ctgtcttcag aggtatcaca tcatgagaat catcacccgt ggtgaagcca
    15421 tgcgtattca ccaacagcat cctgcatccc gtctttttcc gttctgtacc ggtaagtatc
    15481 gctggcacgg cagtgctgaa gcgtatactg gtcgtgaagt gcaggatatt cccggcgttc
    15541 ttgccgtgtt tgcagaacgc cgtaaggaca gttttggccc gtatgtccgg ctgatgagtg
    15601 tcaccctgaa ctgatgttcc gtcacccggg aaacgagtac gaccagatga cctcagacgc
    15661 cgctgtggat gaggccattc tcatcaatgc atacatcttc accgaaaccg gtcagcgcgc
    15721 cggctgacct gtcatcgtta aaccattctt aaccactttt cagagaggat tttatcgtgt
    15781 cagacaaact ctccgggata actcatcccg atgacaatca cgaccgcccc tggtgggggc
    15841 ttccctgcac agtgaggccc tgttttggcg ctcgtctggt gcaagagggt aaccgcctgt
    15901 attaccttgc cgaccgcgcc ggtatcagag gccgcttcag cgacgcagat gcataccatc
    15961 tggaccaggc ctttccgctg ctgatgaaac aactggaact catgctcacc agcggtgaac
    16021 tgaatccccg atatcagcat accgtcacgc tgtatgcaaa agggctgacc tgcgaagccg
    16081 acaccctcgg ctcctgtggt tacgtttatc tggctgttta tccgacacca gcacccgcaa
    16141 ccacctcata accccgaagc tctcaccttt agcactacca gttacagaga acttaagatg
    16201 aaaacattat ccgacacaca tgtacgggag gtatctcgct gcccgtctcc cgtcaccatc
    16261 tggcagacac tgctcatccg actgctggac cagcattatg gcctcacact gaatgacaca
    16321 ccgtttgtcg atgaacgtgt gattgagcag catattgagg caggcatttc actgtgtgat
    16381 gcagttaatt ttctcgtgga aaaatacgcg ctggtgcgta ccgaccagcc gggattcagc
    16441 acctgtcccc gctctcagtt aataaacagt attgatatcc tccgggctcg ccgggcgacc
    16501 ggcctgatga cccgcgacaa ttacagaacg gtaaataaca ttaccctggg taagtatccg
    16561 gaggcgaaat gatgaaactg gccctgacac tggaagccga cagcgttaac gtacaggcac
    16621 tgaacatagg gcgcattgtc gttgacgtcg atggtattga gctcgctgaa ctgattaaca
    16681 tggtctgcga taacggctac tcccttcgtg ttgttgatga atctgaccag acctcagcag
    16741 aatgcacgcc accatttgct acccttaccg gcatacgctg cagtaccgca catatcacgg
    16801 aaacggacaa cgcctggttg tactcgctgt cacaccagac cagtgacttc ggtgaatcag
    16861 aatggattca ttttacaggt agcggatatc tgttacgtac cgatgcgtgg tcatacccgg
    16921 ttctgcggct taaacgcctg gggctgtcaa aaacgttccg tcgtctggtc gtcacactca
    16981 tccggcgtta tggcgtcagt ctcattcatc tggatgccag cgctgaatgc ctgccgggtt
    17041 tacccacttt cgactggtaa ccaggaacaa catgaaatca ttaaccacgg aaacagcgct
    17101 ggatattctg attgcgtggc tgcaggacaa tatcgactgc ggatcgggaa ttatctttga
    17161 caacgatgag gataaaacgg attcagcagc actgttgccc tgtatcgaac aggcccggga
    17221 ggatgtccgt accctgcgtc atctgcagct tctgcaccag aaccggtgaa gctcactcac
    17281 cagacttcat tcctctgacg ccagcctgca cagggctggc gttttcattt atctgcaaaa
    17341 aggaatatcg attatgtcag atatcacaat ctcccgtccg gaagtggtca acgggcatac
    17401 ggacgttatc tgctcaacca gcattcgcca cattctggct gtacgaaaga gtacactgtt
    17461 gcaaatcgac acacttatcc gacaactggc tgaaatctcg gtgctgacgg aaagcatcgg
    17521 aggtaaaact gccccggact gggccatgaa acaggatttt cgctgcggct gctggctgat
    17581 ggagaaaccc gaaacagcaa tgaaagccat tacccggaat cttgatcgcg aaatctggcg
    17641 tgacctgatg caacgttccg ggatgctgtc attaatggat acgcaggccc gtgatacatg
    17701 gtaccggtca ctggagtacg ataattttcc ggaaatcagc gaagcgaaca ttctgagcac
    17761 atttgaacaa ctgcaccaga ataaggatga ggtgtttgag cgaggggtga tcaacgtctt
    17821 cagagggctg aactggaatt acaaaaccaa ttgcccctgt aaatttggca gtaaaattat
    17881 cgtcaacaat ctggtgagat gggaccggtg gggataatga tatggtcacc cccaccttaa
    17941 cagcagtacg ctgttaaggt aaatcccttt aacggagaga ccatcatgca gaacatcaca
    18001 cttattggta tcgatctcgg aaagcactcc ttccacattc attgtcaaga caagtctggt
    18061 aaggctcttc tgcgtaaaaa atttacccgt actaaactga tgcagtttct ggcgacatgt
    18121 ccgccctcag ttgttgtaat ggaagcctgt gcgggtgcac actttatggc tcgctgtatc
    18181 tctgattttg ggcatgaaac taagctgatt tctccacagt tcgttcgccc gtttgtcaaa
    18241 agtaataaga atgattttgt tgatgcagaa gccatatgcg aagcggcttc acgaccatca
    18301 atgcgttttg tccagccaag aactgagacc cagcaggcca tgagggcgtt acaccgggtc
    18361 agagaatcgc tcatcagaga taaggtgaaa acaaccaacc agatccacgg tttcttgctg
    18421 gaatttggaa tcagcctgcc gataggtgat gctgtaataa aacggttgtc tctcgtgttg
    18481 gctgaacacg aaatccccga atatctgagc cgccttttgg tgaggttgca tacccactac
    18541 ttttaccttg ttgagcaaat agcagagctg gaatcagaat taagtcagtc aatcaacgct
    18601 gatgataccg ctcagcgcat tatgacaatt cctggtgttg gtccgattac tgccagctta
    18661 ctatcgtcgc aacttggtga cgggaaacag ttctcatgca gcagggattt tgcagcttcc
    18721 acaggacttg ttccccggca gtatagcact ggaggaaaat cgactctgtt gggtatcagt
    18781 aagcgaggtg ataaaaattt acgccggtta ctggttcagt gtgcccgctc attcataatg
    18841 cgacttgaac gcaagcatgg aaaacttgct gagtgggttc gggagcaact caacaagaag
    18901 cattcgaatg tggttacctg cgctctggca aataaactgg ctcgaattgc ctgggcaatc
    18961 actactcaga aaaaagaata tcaggcctga tatagatgct gatataactc aattagttta
    19021 ttttaaacaa taagatacaa gttacctttc tggttttgcg aagactgatt attgatgaca
    19081 tgaacggcaa atcgacctga ttaaaaacct aacagatgaa atggctcact gaagccgagg
    19141 ggatttttag gattatcagg tgcggaactc atcggggcgc gggcatcctt gcccacagag
    19201 acgccggata gatttaagca agccaaccat taatcaaaaa tcagtgttgc aaaaacgggg
    19261 gtgaccatag atttcatctt atcaccggac aacaggctga ccgactcgcc gatctggaaa
    19321 gaatgttgca cctgttcagc ggtaaaccaa tccccgacaa ccggggaaac atcacccttc
    19381 gtctggatga tcacattcag tctgttcagg gtaaagagag ctatgaagat gagatgttca
    19441 gcatcagata ctttaagaag ggctccgcgc atatcacgtt cagaaaacca gaactggttg
    19501 acagactgaa tgatattatc gcaaaacact atcctgatat gctggcagta tagctttgcc
    19561 agtatgctca aagatcggaa attgtccgat aagatatgat cgcggggcat ataaaccggt
    19621 ttcagatggc atacccgatg gcatactgtc tggaaggaaa aataaaaaag cgcatgttaa
    19681 acaataacat gcacttataa tctggcggtg agggggggat tcgaaccccc gatacgttgc
    19741 cgtatacaca ctttccaggc gtgctccttc aaccgctcgg acacctcacc aaattgttgt
    19801 tcctgtcttg ctggaacggg cgctaattta gggaaatcat gacctgaggt caacaaactt
    19861 tttgaaaaaa tcgcgcgttt attcaaactt caatcaatgt gtggttttaa taagcgaaat
    19921 ctgctttttt tgccaccgac cacggatttg ttatgctggt ggcctttgta gatcataacg
    19981 ataagtgcga ataaatttcg cacaacgctt ttcgggagtc agtatggata tcatctttta
    20041 tcacccaacg ttcgataccc aatggtggat tgaggcactg cgcaaagcta ttcctcaggc
    20101 aagagtcaga gcatggaaaa gcggagataa tgactctgct gattatgctt tagtctggca
    20161 tcctcctgtt gaaatgctgg cagggcgcga tcttaaagcg gtgttcgcac tcggggccgg
    20221 tgttgattct attttgagca agctacaggc acaccctgaa atgctgaacc cttctgttcc
    20281 actttttcgc ctggaagata ctggtatggg cgagcaaatg caggaatatg ctgtcagtca
    20341 ggtgctgcat tggtttcgac gttttgacga ttatcgcatc cagcaaaata gttcgcattg
    20401 gcaaccgctg cctgaatatc attgggaaga ttttaccatc ggcattttgg gcgcaggcgt
    20461 actgggcagt aaagttgctc agagtctgca aacctggcgc tttccgctgc gttgctggag
    20521 tcgaacccgt aaatcgtggc ctggcgtgca aagctttgcc ggacgggaag aactgtctgc
    20581 atttctgagc caatgtcggg tattgattaa tttgttaccg aatacccctg aaaccgtcgg
    20641 cattattaat caacaattac tcgaaaaatt accggatggc gcgtatctcc tcaacctggc
    20701 gcgtggtgtt catgttgtgg aagatgacct gctcgcggcg ctggatagcg gcaaagttaa
    20761 aggcgcaatg ttggatgttt ttaatcgtga acccttaccg cctgaaagtc cgctctggca
    20821 acatccacgc gtgacgataa caccacatgt cgccgcgatt acccgtcccg ctgaagctgt
    20881 ggagtacatt tctcgcacca ttgcccagct cgaaaaaggg gagagggtct gcgggcaagt
    20941 cgaccgcgca cgcggctact aataaagcat caggattcct gctatccttg gcgggaattg
    21001 aatacaggag agagttatgt atcccgtcga ccttcatatg cataccgttg ccagcacaca
    21061 tgcatatagc acattgagtg attacattgc ccaggccaaa caaaagggca ttaaactttt
    21121 tgcgatcacc gatcatggcc cggatatgga agatgctccg catcactggc acttcattaa
    21181 catgcgtatc tggccgcgag tggttgatgg ggtagggatc ctgcgcggca tcgaagctaa
    21241 cattaaaaat gttgatggtg aaattgattg cagcggtaaa atgtttgact cgctggatct
    21301 gattattgcc ggttttcatg agccggtttt tgcaccacat gacaaagcga ccaatacaca
    21361 agcgatgatc gccactatcg ccagcggcaa tgtgcatata ataagccatc ccggaaatcc
    21421 caaatatgaa atagatgtga aagccgttgc tgaagcagcc gcgaaacatc aggtggcgct
    21481 ggaaatcaat aattcttcat ttttacactc acgtaagggc agtgaagaca actgtcgtgc
    21541 ggtagccgca gcggtacgtg atgctggagg ttgggtggca ttaggctcgg attctcacac
    21601 cgcgtttacc atgggggaat ttgaagagtg tcttaaaatc ctcgacgcgg tagattttcc
    21661 gccagagcgc attttgaatg tttctccgcg ccgcttactg aacttccttg aatctcgcgg
    21721 tatggcaccg attgcggaat ttgcagacct ttaattacta gtaatggaaa tatattaatg
    21781 aacgagtttt ctatcctctg tcgtgtgctg ggttcgctct attaccgcca accgcaagat
    21841 cctttactgg tgccgctgtt taccctgatt cgtgagggga aactggctgc gaactggcca
    21901 ctggagcagg atgagttact gacgcgttta cagaaaagct gtgatatggc gcaagtctct
    21961 gccgattaca atgcgttgtt tatcggcgat gaatgtgccg tgccgccata tcgtagcgca
    22021 tgggttgagg acgcaacgga agcggaagtg cgcgcttttc tttccgaacg agggatgcca
    22081 ctggcggata cgccagccga tcacatcggc acattgctgc ttgcggcttc ctggatggaa
    22141 gatcagtcaa cggaagatga gagcgaagca ctggaaacac tgttcagtga gtatctgtta
    22201 ccctggtgtg gtgcgttcct cggcaaagtg gaggcccatg caaccacgcc tttctggcgc
    22261 accatggcac cgctaacccg tgatgccatt agtgcaatgt gggacgagct ggaagaagat
    22321 tctgaagagt aaatgtgatc atcgtcactc ataactgcaa cagataattt gttgttgcat
    22381 aaaatgtgtg ctcgatctca ttcatggccg cgttttctgc tatcatgcgc ggcatgaaca
    22441 tacttctctc tattgcaatc acaacaggca ttctctccgg tatctgggga tgggtggctg
    22501 tttccctggg cttactaagc tgggcgggct tcctgggctg tacggcctac tttgcctgcc
    22561 cgcaaggtgg gctgaaaggg ctggcgatct ccgctgcaac cctgcttagt ggcgtggtgt
    22621 gggcgatggt cattatttac ggtagtgcac tggcaccaca tctggaaatt ctcggttatg
    22681 tcataaccgg tattgtggcg tttctgatgt gtattcaggc caaacagctg ctgctttcat
    22741 ttgttccggg gacgtttata ggcgcatgcg cgacgtttgc cgggcagggt gactggaaac
    22801 tggtgttacc ttcgctggcg cttgggctgg tatttggtta cgcaatgaaa aacagcggcc
    22861 tgtggctggc ggcgcgtagt gcaaagacgg ctcaccgtga gcaggaaatc aaaaataaag
    22921 cgtgaggggc actcacgctt tcgcttaaac agtaaaatgc cggatgataa ttccggcttt
    22981 tttatctgtc aggattccgg tggaaccgac atatggcggt atttcaccag aatgtcattc
    23041 tgccgttctg ctttattttg caaatcccac agaccacggt cgataccatc attaatcagg
    23101 aaaatgaccc ctgtttcgat agccgacatc agacacagca taacgggttc gtttgaggtg
    23161 taacccactt ccccttccag caagcgctgg tagtcaataa agcggaaaac cccggcctga
    23221 acttcatagg aaagtatcgt cttactggtg ttcaccgagg agaggatctc accggtactc
    23281 acattgacga cacgcaggtt cacggcaatc tgatcgagct ggtattgcgt gtctgcaccg
    23341 atcccaaaat atcttgcccc aacaccgccc gatttaacgt tgctttcata accgataatc
    23401 gaaccttcaa ccataatatt tgccgccgtt aaagattgca gcgggattcg gttattaatg
    23461 gcaaccgtgc cgttttcttg tgccgcacga ataatcttgc gctcgttaag caggttttgt
    23521 aagccctagc gctccagcgg tataaaccag cgagaatctt tcaatgccgt gaccagcatt
    23581 gccgtggcgc tttgcggaac agcagtggag aagttacttg ccgggtaggg tttaaattgc
    23641 ccggtttcgt cctgaat
//
LOCUS       DAJVUP010000053        23480 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.053, whole genome shotgun sequence.
ACCESSION   DAJVUP010000053 DAJVUP010000000
VERSION     DAJVUP010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23480
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.053"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..102)
                     /locus_tag="OQQ75_001900"
     CDS             complement(<1..102)
                     /locus_tag="OQQ75_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HCS1976251.1"
                     /translation="MGSLPLKGNMKQKITDYLDEIYGGTFTATHLQKL"
     gene            complement(287..601)
                     /gene="pspE"
                     /locus_tag="OQQ75_001901"
     CDS             complement(287..601)
                     /gene="pspE"
                     /locus_tag="OQQ75_001901"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase PspE"
                     /protein_id="HCS1976252.1"
                     /translation="MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIP
                     LKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKV
                     KG"
     gene            complement(676..897)
                     /gene="pspD"
                     /locus_tag="OQQ75_001902"
     CDS             complement(676..897)
                     /gene="pspD"
                     /locus_tag="OQQ75_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspD"
                     /protein_id="HCS1976253.1"
                     /translation="MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVA
                     RRPLKMLLAVALEPLLSRAANKLAQRYKR"
     gene            complement(906..1265)
                     /gene="pspC"
                     /locus_tag="OQQ75_001903"
     CDS             complement(906..1265)
                     /gene="pspC"
                     /locus_tag="OQQ75_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HCS1976254.1"
                     /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS
                     IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME
                     RYVTSDTFTLRSRFRQL"
     gene            complement(1265..1489)
                     /gene="pspB"
                     /locus_tag="OQQ75_001904"
     CDS             complement(1265..1489)
                     /gene="pspB"
                     /locus_tag="OQQ75_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HCS1976255.1"
                     /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA
                     QLADEAKRMRERIQALESILDAEHPNWRDR"
     gene            complement(1543..2211)
                     /gene="pspA"
                     /locus_tag="OQQ75_001905"
     CDS             complement(1543..2211)
                     /gene="pspA"
                     /locus_tag="OQQ75_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HCS1976256.1"
                     /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR
                     STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK
                     SLEHEVTLVDDTLARMKKESGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK
                     LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK
                     QDNQ"
     gene            2378..3355
                     /gene="pspF"
                     /locus_tag="OQQ75_001906"
     CDS             2378..3355
                     /gene="pspF"
                     /locus_tag="OQQ75_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HCS1976257.1"
                     /translation="MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL
                     IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG
                     TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPATVNEGT
                     FRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERARETLL
                     NYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP
                     LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI"
     gene            complement(3475..4740)
                     /gene="puuE"
                     /locus_tag="OQQ75_001907"
     CDS             complement(3475..4740)
                     /gene="puuE"
                     /locus_tag="OQQ75_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate transaminase"
                     /protein_id="HCS1976258.1"
                     /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID
                     FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA
                     KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP
                     FPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPK
                     ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLS
                     GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL
                     IDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG
                     NVIRFLYPLTIPDAQFDAAMKILQDALSD"
     gene            complement(4778..6047)
                     /gene="puuB"
                     /locus_tag="OQQ75_001908"
                     /pseudo
     CDS             complement(4778..6047)
                     /gene="puuB"
                     /locus_tag="OQQ75_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415817.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylputrescine oxidase"
     gene            complement(6049..7536)
                     /gene="puuC"
                     /locus_tag="OQQ75_001909"
     CDS             complement(6049..7536)
                     /gene="puuC"
                     /locus_tag="OQQ75_001909"
                     /EC_number="1.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase PuuC"
                     /protein_id="HCS1976259.1"
                     /translation="MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVT
                     QAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA
                     LLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGV
                     IAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLVGLAKEAGLPDGVLN
                     VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIV
                     FSDCSDLQKAASSTAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHP
                     LDPATTMGTLIDCAHADSVHSFIREGEGKGQLLLDGRNAGLAAAIGPTIFVDVDPNAS
                     LSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWMRDLSRAHRMSRRLKAGSVF
                     VNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA"
     gene            complement(7811..8368)
                     /gene="puuR"
                     /locus_tag="OQQ75_001910"
     CDS             complement(7811..8368)
                     /gene="puuR"
                     /locus_tag="OQQ75_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001464354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator PuuR"
                     /protein_id="HCS1976260.1"
                     /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK
                     VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN
                     PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT
                     GIPHSFSNTSAGICRIISAHTPTTF"
     gene            complement(8395..9158)
                     /gene="puuD"
                     /locus_tag="OQQ75_001911"
                     /pseudo
     CDS             complement(8395..9158)
                     /gene="puuD"
                     /locus_tag="OQQ75_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415814.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase"
     gene            9370..10788
                     /gene="puuA"
                     /locus_tag="OQQ75_001912"
     CDS             9370..10788
                     /gene="puuA"
                     /locus_tag="OQQ75_001912"
                     /EC_number="6.3.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-putrescine ligase"
                     /protein_id="HCS1976261.1"
                     /translation="METNIVEVENFVQQPEERRGSAFTQEVKRYLERYPNTQYVDVLL
                     TDLNGCFRGKRIPVSSLKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVP
                     VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL
                     EFYLLDRQRDAEGYLQPPCAPGTDNRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIP
                     ADGAVAEASPGQFEINLYHTDNVLEACDDALALKLLVRLMAEKHKMHSTFMAKPYEEH
                     AGSGMHIHISMQNNRGENVLSDTEGEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRR
                     FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYRVAGADANPYLVMAAIFAGILH
                     GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN
                     DELLQFERLITETEIEWMLKNA"
     gene            10937..11102
                     /locus_tag="OQQ75_001913"
                     /pseudo
     CDS             10937..11102
                     /locus_tag="OQQ75_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518772.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            11092..12477
                     /gene="puuP"
                     /locus_tag="OQQ75_001914"
     CDS             11092..12477
                     /gene="puuP"
                     /locus_tag="OQQ75_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PuuP"
                     /protein_id="HCS1976262.1"
                     /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTF
                     GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMV
                     GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVVTFVAILTAANLKSINLVANFN
                     TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF
                     LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA
                     LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH
                     PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN
                     KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL
                     YDGDRTPVSET"
     gene            12611..12856
                     /locus_tag="OQQ75_001915"
     CDS             12611..12856
                     /locus_tag="OQQ75_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmjA family protein"
                     /protein_id="HCS1976263.1"
                     /translation="MNHDIPLKYFDIADEYATECAEPVADAERTPLAHYFQLLLTRLM
                     NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE"
     gene            13169..14812
                     /gene="sapA"
                     /locus_tag="OQQ75_001916"
     CDS             13169..14812
                     /gene="sapA"
                     /locus_tag="OQQ75_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein SapA"
                     /protein_id="HCS1976264.1"
                     /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV
                     NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR
                     DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV
                     RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY
                     QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS
                     QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG
                     TAETAASILPRASWAYDNEAKITEYNPAKSREQLKALGLENLTLKLWVPTRSQAWNPS
                     PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP
                     LLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA
                     SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP"
     gene            14809..15774
                     /gene="sapB"
                     /locus_tag="OQQ75_001917"
     CDS             14809..15774
                     /gene="sapB"
                     /locus_tag="OQQ75_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapB"
                     /protein_id="HCS1976265.1"
                     /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW
                     VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGIT
                     RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA
                     LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA
                     ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI
                     RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR"
     gene            15761..16651
                     /gene="sapC"
                     /locus_tag="OQQ75_001918"
     CDS             15761..16651
                     /gene="sapC"
                     /locus_tag="OQQ75_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapC"
                     /protein_id="HCS1976266.1"
                     /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI
                     FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA
                     FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH
                     AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT
                     EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS
                     VLLVNLLGDGVRRAIIAGVE"
     gene            16651..17643
                     /gene="sapD"
                     /locus_tag="OQQ75_001919"
     CDS             16651..17643
                     /gene="sapD"
                     /locus_tag="OQQ75_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapD"
                     /protein_id="HCS1976267.1"
                     /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS
                     GKSLIAKAICGVNKDNWRVIADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL
                     DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT
                     EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD
                     LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN
                     TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE"
     gene            17645..18451
                     /gene="sapF"
                     /locus_tag="OQQ75_001920"
     CDS             17645..18451
                     /gene="sapF"
                     /locus_tag="OQQ75_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapF"
                     /protein_id="HCS1976268.1"
                     /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA
                     IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN
                     PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG
                     LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS
                     DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR"
     gene            18519..18872
                     /locus_tag="OQQ75_001921"
     CDS             18519..18872
                     /locus_tag="OQQ75_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HCS1976269.1"
                     /translation="MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVG
                     SYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAV
                     LEIILQELNRRSPSP"
     gene            19240..20028
                     /gene="fabI"
                     /locus_tag="OQQ75_001922"
     CDS             19240..20028
                     /gene="fabI"
                     /locus_tag="OQQ75_001922"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HCS1976270.1"
                     /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL
                     KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG
                     DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG
                     LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR
                     TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK"
     gene            20173..21300
                     /locus_tag="OQQ75_001923"
     CDS             20173..21300
                     /locus_tag="OQQ75_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309887.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMD domain-containing protein"
                     /protein_id="HCS1976271.1"
                     /translation="MEQRHITGKSHWYHETQSSTAEYDVLPLVPEAAKVSDPFLLDVI
                     LDEETLAPFLSWLVPARVLAVELFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC
                     NYYSARLTPLPGPDSSRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTARDC
                     VIINQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESIRWRSSYEV
                     EKLPEEYTKSSTAELCQLAETHSLHPISLSLLERLLNSTRVNTQPDNKLAALLCARIN
                     GSPACFAACMDSSNEYKKISPLLRKGENEINQWADRHSVEHATVQAIQWLTRAPDRFS
                     TAQFSPLLEHEQSSTQIINLLVWSGLCGWINRLKIALGETY"
     gene            21368..23302
                     /gene="rnb"
                     /locus_tag="OQQ75_001924"
     CDS             21368..23302
                     /gene="rnb"
                     /locus_tag="OQQ75_001924"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HCS1976272.1"
                     /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY
                     FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD
                     HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
                     WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP
                     DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN
                     EVRPVLACRMTLSADGAIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA
                     EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA
                     MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
                     KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH
                     RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA
                     EIVDISRGGMRVRLVDNGAIAFIPAPFLHAMRDELVCSQENGTVQIKGETVYKVTDVI
                     DVTIAEVRMETRSIIARPVA"
     gene            complement(23380..23480)
                     /locus_tag="OQQ75_001925"
                     /pseudo
     CDS             complement(23380..23480)
                     /locus_tag="OQQ75_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791239.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         5304 a         6203 c         6115 g         5858 t
ORIGIN      
        1 aagtttctgt aaatgagttg cggtaaatgt tccaccgtag atttcgtcca ggtaatcagt
       61 aattttctgt ttcatgttgc ctttcagtgg tagcgatccc atgaaacgag agactactcc
      121 gcagaaaata aactgtcaat tgagcacaag ggttttagtc acgcaggaaa tcatttttta
      181 ccagggaaaa agcgtatttg tgagctgacg caaataatct atggggatgt aaataaggtg
      241 tgacagaaaa aaaacggcgc ataagcgccg ctcatggtga attcttttaa cctttgacct
      301 tcggcattgc gatgtctttc aagccaccgg cgttctcaac gtgggtatat cccatctcgc
      361 taaggatctc ttttgcttgc cctgactggc gtccggcatt gcaatacact ttcacggtgt
      421 cgtttttatc cggaacggcg gtggcaatgc gctctttcac ttccttcagg ggaatattga
      481 tggccccctg aacgtgctct tgctgatact gctctggaac acgaacatcg atccagtgtt
      541 cagcggcgaa aacgggcagt gaaaacacca gtgccagagc aagtaagcct tttttaaaca
      601 tgtaagcgtc cttctatgga tgaaaattgc catccattat acgcctgaga tttaacaatt
      661 tttgcgaaac tcccctcacc ttttataacg ctgtgccagt ttattagcag cccgacttaa
      721 cagcggttcc agcgccacag ccagcaacat tttcagcggt cggcgagcaa ctgattttat
      781 cgcccagccc gctacacccg ccgggccata gcgcagtgcg gtaagaagta ccagcttgcc
      841 tgctaatttg aaaccaggct ttaccttttg cccggcctgt tgccagcgag tattcataac
      901 tttcctcaca gttgacggaa acggctacgt aacgtgaaag tatcggaagt gacataacgt
      961 tccatctcgc gtaaacgcgt ttcacttgcc gccagttcac ggtcgacttc atccagcaat
     1021 tcgctgctgg agggtagctg ctcaccaaag gccatgttgt ccggcattgg atcaagcgca
     1081 aatgacaaaa tgatgtaagc aaccagggta aacagcgcca gaccgaagaa aatcgacagc
     1141 accaccagga tacgcaccag ttttaccggt acatcaaaat agttggcaat cccggcgcag
     1201 acgccgcgga ccatgccctg ctgtggaata cgccataatt ttttattgag attaatgccc
     1261 gccattagcg atccctccag ttcggatgtt ctgcatcaag aatagattcc agcgcctgaa
     1321 tacgttcgcg catccgtttt gcttcatcag ccagttgcgc taatcgctgc tgctcacttt
     1381 gcgacaattc actgcgacca gaacgattgc tgtaatgcag ccataaccag atcggtaaaa
     1441 caaacagcac aaaaatggtt aacggaatag ccagaaatag cgcgctcata agtactcctt
     1501 agacgatgag cggcggcgcg ttcggacgcc gcctagatgt tattattgat tgtcttgctt
     1561 cattttggct tttaattgtg ccagttgttc gctgattgca tcatcggctt tcagttcggc
     1621 aaactgatcg tccagcgatt tttgtttacc gaagctgtgg ctttctgctt ccgcttccat
     1681 ctggtcaata cgacgttcga aagattcgaa acgagccatt gcttcatcca gtttgccact
     1741 gtccagctga cgacgcacat cgcgcgacga gtttgccgcc tgatggcgta acatcaatgc
     1801 ctgctggcga gcgcgtgttt cgctcaattt gttttccagc tcaccgctct ctttcttcat
     1861 gcgtgccagc gtatcgtcca ccagcgtcac ttcatgttcc agactcttaa tcagatcggt
     1921 cagtttctgt ttttcaatta acgccgcacg tgccaaatcc tctctctctt tcagcagcgc
     1981 cagttcggct ttttcctgcc attcaacttc acgcgccgac gcttgttcaa tacggcgagt
     2041 cagctgtttc ttttctgcca acgcacgcgc cgaagtagaa cgtacttcaa ccagtgtatc
     2101 ttccatctcc tggatcatca gacgcaccag tttctgtgga tcttccgctt tctctaacag
     2161 agcgttgatg ttggcattca cgatgtcggc aaagcgagaa aaaataccca taatgttgtc
     2221 ctcttgattt ctgcgttcag gattgtcctg ctgaactgtt aatacaattt gcgtgccaat
     2281 tttttatctt tttgatttat aaagatctga ttgaagaatc atcagcaaca tgccaggatg
     2341 aattagcgaa ttacactaac aagtggcgaa tttcatcatg gcagaataca aagataattt
     2401 acttggtgag gcgaacagct ttctcgaagt gctggaacag gtttcgcatc tcgcaccgct
     2461 ggacaaaccg gtgctcatca tcggcgaacg cggcaccggt aaagagctga ttgccagccg
     2521 cctgcattat ctctcctccc gttggcaagg gccgtttatt tcccttaact gcgcggcgtt
     2581 aaatgaaaat ctgctggatt ccgaactgtt tggtcacgaa gcgggggcgt ttaccggtgc
     2641 gcaaaaacgt catccaggga gatttgaacg tgccgacggc ggtacgctat ttcttgatga
     2701 actcgctacg gcaccgatga tggtgcagga gaaattattg cgcgtgattg agtacggtga
     2761 actggagcgc gttggcggca gccagccatt gcaggtgaat gtgcggttgg tatgcgcgac
     2821 gaatgccgat ctcccggcga cggtcaatga aggcactttt cgcgctgacc tgctcgaccg
     2881 actggctttt gatgttgtac aactgccacc actgcgcgag cgcgaaagcg acataatgtt
     2941 gatggcagaa cactttgcca tccagatgtg tcgggaaatc aagctgcctc tgttcccggg
     3001 gtttacggag cgcgccagag aaacattgct gaattatcgt tggccgggaa atattcgtga
     3061 attgaaaaac gtggtggaac gttcagtgta tcgccacggc accagcgatt atccgcttga
     3121 tgacatcatt attgatccct ttaaacggcg tccgcctgaa gacgctatcg ccgtttcaga
     3181 aaccacctcg cttccaacac tgccgctgga tttacgtgag tttcagatgc agcaggaaaa
     3241 agagttgctg caactcagtt tgcaacaagg gaaatataac cagaagcgcg cggctgaatt
     3301 actggggtta acttatcatc agttccgcgc gttgttgaaa aagcaccaga tttagcgaag
     3361 ttgagcaata caacttgccg gatgcggcgt gaatgcttta ttcggcatac ataatcaata
     3421 agtcgtttgc aggcctgata agcgcagcgc atcagacatt attgcgttgg gctattaatc
     3481 gctcagcgca tcctgcaaaa ttttcattgc cgcatcgaat tgcgcatccg gaatggtcag
     3541 cggatacagg aagcgaatca cgttgccgta tgcgccacag gtcagcagga gcagcccctg
     3601 cgccagcgcg cgttgctgga ttttctgtgc aatcgccgct gacggctcgc ccgtttgcgg
     3661 atcgttaaac tctgccgcaa tcatcgaccc caggccgcgt accgcagcaa tggccggaac
     3721 gctttctttg gcatcaatca acgtgttttt gagacgctgg cccagttgat tcgcgcgttc
     3781 gcagagtgat tctttgtcga taatattgag caccgcgtgc gcggcagcca ccgccagcgg
     3841 gttcccggcg taggtgccac ccaacccgcc cggcgcgggc gcgtccataa tattcgcgtt
     3901 accgaccacg cccgaaagcg gcatcccgcc cgcgaggctt ttcgccatcg tcattaagtc
     3961 cggcttatcg gcgtaatgat ccatggcaaa cagtttaccg gtacgcgcaa agccgctttg
     4021 cacttcatcg gcaatcatca caataccgtg ctcgtcgcac aggcggcgaa tggcggcaac
     4081 cagctctttt ggcgcaacgt tgaaaccgcc ctcgccctgc accggttcga aaataatggc
     4141 cgccacctgc ttcgcttcaa tgtccgattt aaacaagcgt tcgatggcgt cgagggagtc
     4201 ctgtgttgaa atgccgtgta aatctgacgg ataaggtacg tgatacaccg aaccagggaa
     4261 cgggccgaag ccgattttgt acggcgcaac ttttccggtc agcgccatgg tcatatatgt
     4321 acgaccgtgg aagccgccgc taaacgcaat cacgccaggt cgtccggtat gggcgcgagc
     4381 aattttcacc gcgttttcca ccgcttccgc gccggtagtg aagaatgcgg ttttagcctg
     4441 cccgctcact ggggcaaggg cgttaatttt ctccgccagc gtgacgtagc tttcgtacgg
     4501 cacaatctga tacgccgtgt gggtaaactg ttgcaattgc tgctccaccg ccgcgaccag
     4561 atcagggtgg cgatgcccgg tattcagcac cgcaatgcct gcggcgaaat cgatgtattc
     4621 gttgccctct acgtccttca gcgtagcgtt ttctgccgac tgggcgaaga agttacacat
     4681 cacgccaacc ccgcgtgggg tagcagaaag acgacgctga tggaattcat tgttgctcat
     4741 gtttcacacc ttttgactct tcactgttaa tcggaaatta aacgcccaga cgatcgcgca
     4801 ggctgtaata agccgcgccc atcgcggtaa atggcacgcg cagcgtgcgc ccgccgggga
     4861 acgggtaatg cggcagattg gcgaaggcat cgaaacgctc ggcgtcaccg cgcagcagtt
     4921 cagcaatcaa acgcccggcg aggtgggtac aggtgacgcc gtggccgctg tagccctgca
     4981 tgtaatagat gttggtatcg aggcgaccga actgcggcat ccgtgaaagg gtcagcagga
     5041 agttgcccgt ccagcgatag tcgattttga cgcccttcag ctgcgggaag gttttcagca
     5101 gtttcggcac aacaagacgc tcaacgtcat ccgggtcgcg cgcgccgtag accacgccgc
     5161 cgccgtacag caaacggttg tcggcggtaa gacggtagta atcaagcaga taattacagt
     5221 cttccacaca gtagtttttc gggatcagcg aacgggctaa atcttccgac agccgttcgg
     5281 tggtgatcac ctgcgtgccg cacggcatgc tgcgtttcgc cagttccggc tctactttat
     5341 cgcccagata cgcattcccg gcgacaatca catacttcgc cgtcacctga cctttggcag
     5401 tgcgcacaac ggctggcgtg gtgtgctgga tctgcgtcac ggcagaaagt tcatacacgc
     5461 gcccgccgtt gaggcggatg gcgtccgctt cgccaatggc gaggtttagt gggtgaatat
     5521 gcccaccgct gtgatccagc agcgcaccgg tatagcgatc gctggctact tcacggcgaa
     5581 tggcgttggc gtccagcaat tccagctgtt tattgccgta gcgttcccag ttctctttct
     5641 gctcttcaag tgtggcgagc tgtttatcat tcatcgccac aaacaggctg ccggggcggt
     5701 agtcgcagtc aatctgataa cgtttgatac gttcgcggat gatctcacca ccttcgaaca
     5761 tcatgctgcc gagcataggg gcggtgtcca tgccgtagct tttttcgatc acgtcgatgt
     5821 cgcggttgta ggagttcaca agctgcccgc cattgcgccc gcttgcgcca aagccgatgc
     5881 gtgaggcttc gagaaccact acgtcaaagc ccgcttccgc cagatgcagc gcggaggaga
     5941 gcccggtata gccgccgcca accacgcaaa cgtcgcaggt gattgactca ttcagggtgt
     6001 cgaatggcac gtatttatgc gtaataactg ctggtatgtt cggtcatttc aggcctccag
     6061 gcttatccag atggttttca gttcggtgaa tttttcaagg gcatgcaggg atttgtcgcg
     6121 accgttgccg ctctgcttat agccgccaaa cggcacggtc atatcgccgt cgttgtagtt
     6181 attgacgaag acggaaccgg ctttcaggcg gcggctcata cggtgcgcgc gggagaggtc
     6241 gcgcatccat accgccgcgc caaggccgta ctggctgtcg ttggcaagct gtagcgcctg
     6301 ttcttctgat gtgaaacgcg tgaccaccag caccggaccg aaaatctctt cgcggcttaa
     6361 ggacgcattc gggtctacat ccacaaagat ggtcgggccg atggcggcag ccagcccggc
     6421 gttacggcca tccagcagca gttgcccttt gccttcgccc tcacgaataa agctatggac
     6481 cgagtcggcg tgggcgcagt cgattaaagt gcccatggtg gttgcggggt caagcggatg
     6541 gcccggctgc cagttttgcg cctgctgttt taacagggct aagaattcat cggcgatgct
     6601 ctcttccagc aacaggcgtg ttccggcgat gcacacctga ccctggttgt agaagatgcc
     6661 tgctgcggtg gagctcgccg ctttttgcag atccgaacaa tcggagaaaa cgatgttggc
     6721 gcttttgccg cccgcttcca gccagacgcg tttcatgttg ctgtcgcccg catctttcag
     6781 cagctgtttc ccggtacggg ttgaaccggt aaaggcaatg gcgtcgatat cgttatgacg
     6841 cgacagcgcc tgccccgctt catgaccaaa acccgtcacc acgttcaaca caccatccgg
     6901 caagcctgct tctttcgcca gccccacgag acgaatcgca ctgagcggtg atttttcaga
     6961 cggttttaga atcacgctgt ttcccgccgc cagcgccggg ccgagtttcc agcaagtcag
     7021 caacagcggg aagttccacg gcacgatggc ggcaatcacg ccgaccggtt cacgcacgat
     7081 catcgccagc tcatggctac tggtggtcgc cacttcgcca tacactttgt cgatcgcttc
     7141 ggcgtaccag cgaatggcgc gcgccgcgcc gggaatatca tcacgcagac tgtgacgaat
     7201 cggtttgccg gtgtcgagag tttccagcag tgccagctct tcggcgtggg cttccattaa
     7261 atcggcgagt ttattcagta ccgctttacg tttagccgga gaagagagtg accagtcgcc
     7321 gcgttcaaat acgccgcgtg ctgcgctcac cgcacggtcg atatcgacgc tcttgccgcg
     7381 ggcaattttc gccagcggtg cctgggtgac tggatcaacg gtttcaaagg tttcattttc
     7441 cgccgcagca gtatattcac cgttaataaa taagcggttt tcaatggcga gacttaacgc
     7501 tttatcctgc cagtaagcca gatgatgaaa attcattatg actcctgttt tacgtctatc
     7561 agatatatgc agtttgtgaa cgtcagggcg cagagatccc cgggccgtat gcccgtttat
     7621 ttctggcgac attctttata tacacttcat ccttcaagcc gcctctgcct tggctgcgtt
     7681 cgctcccccg aatcacttac ctgagtaagc tcatcgggat tcgctcactt gccgccttga
     7741 tgcaacttga atgattttgt gtatagattg ccgggcgcat tgcgcttacc cggcttacag
     7801 aacaaaaaga ttaaaacgtg gtgggcgtat gggcgctgat aattcggcaa atacctgccg
     7861 acgtattact gaaactgtgc gggatgccgg tattaatggc ataactttga cccgcgacga
     7921 ggtggtaatc ctgaccatta atcgtcagaa caatttcacc ttccagtact gtgcctattt
     7981 cctcaccctg atgcttaatt ctttccccag tggttgtgcc cggctggtac gtttcaaaga
     8041 tcatcgccag cgtgcgattc gggttaccgt tatgaaccag cttcattgac acaccctgac
     8101 tgcccatctc aattaagtcg tcctgattaa tgacgacctg cggctcatca ggtttttccg
     8161 gctcggaaaa gaattccgag agtgacagac catacacctt cagcagcttt tgcagcgtac
     8221 tgatggcagg gctgacttta tcttgttcta tcgtactgat agcactgtga gtcagcccgg
     8281 agagttcggc ggcacgacgt tgtgaaagcc cctgctgctg gcggatttcc gacaagcgtt
     8341 ttcctggcgc cagtccctca tcactcatat ttgcatttcc ttaaactgta gtggtcagag
     8401 tcgctgtttt tcagcgatat ggtgctgaca agcggtgata aagccctcga acaatatacg
     8461 cgaaagagcg tactcgctac tgttccattc cgggtgccac tgtacgccca gcgcaaaagg
     8521 atgattgatg acgctaaccg cctcaactaa gccatccggc gagcgagctt caacacgcaa
     8581 ccgtgggcta acgaccttcg ccccttgtcc atgtagagag tttacccaaa agttgctaca
     8641 ttcaggtaac aacgcagaca gtaatccccc ctcttcaacc tgaacttcat gcgacggtgc
     8701 atattgctgt tccaccggca gttcggatct tcccgatgtt ccagcaattc aggctgttcg
     8761 cacagcttgc gatgcaacga accaccggtt gccaccacca gttcttgtaa accccggcag
     8821 atggcgaaaa tggggatgcg cctttcgagt gcggcattaa ttatcgccat gctcagaaga
     8881 tcacgcccgg gatcggcgtc aggctcatcg ccgttttcac catataggtg cggctgcaca
     8941 ttgctgggac taccaggaag ataaatgcca tcgagtttcg gcaaaagttg ttcaagtaac
     9001 gacggttccg ccagcgcatg tggtagcgca attggcaagc cgcctgcgtg gatgatggca
     9061 ttcaggtact tttcttgcag agtctgggtc gcatgaccct taagcctgtt cctgcacatt
     9121 acgacaccga taaccggatt gttcattata tttttcatgc tcaatctcac aaagtggact
     9181 aaattatcgc cattactgcg ctttaaatga cctttatgtt caatattttt tcaatctagc
     9241 agtgggtttt catttttgca aactaaattt aacatttggc aaacatttag tttgcataca
     9301 gattcgaatg gtggtcatta tattttacgc tttgataacg agcggaaaac aaaccaaagg
     9361 cgaagaatca tggaaaccaa tatcgttgaa gtagagaact ttgttcagca gccagaagag
     9421 aggcggggta gcgcctttac gcaggaagtg aaacgctacc tggagcgcta cccgaatacg
     9481 caatatgttg atgttttact tactgatttg aatggttgct tccgtggaaa acgtatccct
     9541 gtttcaagcc tgaagaagtt ggagaaaggg tgttatttcc cggcctcggt gtttgcaatg
     9601 gatattctgg gcaacgtagt agaagaagcg ggtctgggtc aggaaatggg cgagccggat
     9661 cgtacttgtg ttcctgttct cggttcctta accccttctg ccgccgatcc agagtttatc
     9721 ggtcagatgc tcctgaccat ggtcgatgaa gatggcgctc cctttgacgt tgagccgcgg
     9781 aacgttctta accgcctgtg gcagcagcta cgccagcgcg gattgttccc ggttgtagcg
     9841 gtagagctgg agttctattt actggatcgt cagcgcgacg ctgaagggta tctgcaaccg
     9901 ccctgcgcgc ccggcaccga taaccgcaat acacaaagcc aggtttactc cgttgataac
     9961 ctcaaccact tcgccgacgt gctcaatgat attgatgaac tggcgcagtt acagttaatt
    10021 cccgccgacg gtgcggtcgc cgaagcctcg ccgggtcagt ttgaaatcaa cctttaccat
    10081 accgataacg tgctggaagc ctgcgatgat gcgctggcgc taaaactcct ggtgcgtctg
    10141 atggcagaaa agcataagat gcactccact tttatggcga agccgtatga agagcacgcg
    10201 ggcagcggga tgcatatcca tatcagtatg caaaataatc gtggcgagaa tgtgctttct
    10261 gacacagaag gcgaagattc gccgctgctg aaaaagatgc tcgccgggat gattgacctg
    10321 atgccgtcgt cgatggcgtt gctggcacca aacgtgaact cgtatcgccg cttccagccg
    10381 ggaatgtatg tgccgacgca ggcgtcgtgg ggccataaca accgcaccgt cgccctgcgt
    10441 attccgtgcg gcgaccgtca taatcaccgc gtggaatatc gcgtggcggg tgccgatgcc
    10501 aacccatatc tggtgatggc agcgattttt gccggtattt tgcatggcct tgataacgag
    10561 ctgccgttgc aggaagaagt cgaaggcaac gggctggaac aggaaggctt acccttcccg
    10621 attcgccaga gcgatgccct gggtgagttt atcgagaatg atcacctgcg ccgctattta
    10681 ggcgaacggt tttgccatgt gtatcacgcc tgtaaaaatg atgagctgtt gcagtttgag
    10741 cgcctcatca cagaaacaga aattgagtgg atgttgaaaa acgcatagta ccccttgcgg
    10801 ggttgtttca tcgacctgag cggagccagg cctgacattt gctggtaatc cagacatttc
    10861 ccggatgtcg cgttatggag cgcaggcggc aacgggcttc cgttaacgat taagactgtg
    10921 acgaggaaat gagatgatgc cgatgattaa atccccgcat ggcgagggag gctgcgtatg
    10981 cgcccctcct gctactgact ggactccgtc ccctttgctt cccttgctaa acaggtttga
    11041 tttcaggtcg acacgaccgc aaaccttatt acgcaggggg aggcagcaat tatggctatt
    11101 aattcaccac tgaatattgc tgcgcaaccc ggcaaaaccc gtctgcgaaa atcactgaaa
    11161 ttgtggcagg tggtgatgat gggtctggcc tatctcacgc cgatgaccgt atttgatact
    11221 tttggtattg tctccggcat tagcgacggt cacgttccgg cgtcctattt gctggcgctg
    11281 gcgggcgtgc tgtttaccgc tatcagctac ggcaaactgg ttcgccagtt tccggaggcc
    11341 ggttcggcct atacctacgc gcaaaagtcg attaacccgc acgtcggatt tatggtcggc
    11401 tggtcatcgc tgctggatta tctctttttg ccgatgatca acgtcttgtt ggcgaaaatc
    11461 tatctctccg ccctcttccc ggaagtgccg ccgtgggtgt gggtagtaac cttcgtcgcc
    11521 attttaaccg ccgcgaatct gaagagcatc aacctggtcg ctaacttcaa taccctgttt
    11581 gtactggtgc aaatctccat catggtggtg tttatcttcc tggtagttca gggactgcat
    11641 aaaggagaag gcgttggcac cgtctggtca cttcagccgt ttatcagcga gaacgcgcac
    11701 ctgatcccga ttattaccgg ggcgacgatt gtctgtttct ccttcctcgg tttcgatgcg
    11761 gtgaccacgc tttcggaaga gacgccggac gccgcacgcg tgatcccgaa agccatcttc
    11821 ctgacggcgg tctacggtgg cgttatcttt atcgcggcgt cgttctttat gcagctgttc
    11881 tttcccgata tcagccgctt taaagatccg gatgccgcac tgcctgaaat tgcgctgtac
    11941 gtcggcggca agctcttcca gtcgattttc ctctgcacca cgtttgtgaa cacgttagcc
    12001 tctggcctgg cttcacatgc cagcgtgtcg cgtctgctgt atgtgatggg gcgtgacaat
    12061 gtgtttccgg agcgcgtgtt tggctatgtg cacccaaaat ggcggactcc ggcactcaac
    12121 gtcattatgg tcgggattgt cgcgttgtcg gcgctgttct tcgatttagt taccgccaca
    12181 gcgttaatta acttcggtgc tctggtggcg tttaccttcg tgaatctgtc ggtgtttaat
    12241 catttctggc ggcgtaaagg aatgaataaa agctggaagg atcacttcca ctatttgctg
    12301 atgccgctgg ttggcgcgct gacggtgggt gtgctgtggg ttaacctcga gtcaacgtca
    12361 ctgacactcg gtctggtatg ggcttcgtta ggcggcgcat atttatggta tctgatccgc
    12421 cgctatcgca aagtgccgtt gtatgatggt gacagaacgc cggtgagtga aacgtaatag
    12481 tcggatgcgc ggcgcattat cctgccggag ggtaatgcac cgcgccatta actataaaaa
    12541 gatgtatgac ccggatcacg agtgctatca tccgccctta tgcttagcgc attaacccca
    12601 ggggcaaata atgaaccacg atatcccgct aaaatatttt gatattgccg atgagtacgc
    12661 gaccgaatgc gcagagcctg tcgcagacgc tgaacgcaca ccgctggccc actacttcca
    12721 gttactgctc acccgtttga tgaacaatga agagatcagc gaagaagccc aacatgaaat
    12781 ggctgctgaa gcggggatta atcccgtacg cattgatgag atcgcagagt ttttgaatca
    12841 atggggtaat gagtaattat ttaattgcag acgatcggtc agtatcgttg tccggataaa
    12901 gcgttcacgc cgcatccggc taacaatgac acgcactgca gcgtgcttta atgggtttct
    12961 cacgatcgta ccgctctgct cctcgctaag ttgttctgtg agttatagtt atagaggaag
    13021 cacgggtacg aatgttgaac agatggcgac gccacctgtt caacgaccaa ccacacggcc
    13081 ctcattacga cccctgaaca caaacggtaa tggcaaatgt cattaaatat tagtaagata
    13141 gcctctttac ataaaatccc ttaatattat gcgccaggta ttatcgtctc ttttggtgat
    13201 tgctggactt gtgagtggtc aggcaatcgc cgcgcctgaa tcccccccgc atgctgatat
    13261 ccgcgacagc ggttttgtct attgcgtcag cgggcaagtc aacaccttta acccatccaa
    13321 agcgagcagt gggttaattg tcgataccct tgccgcccag ttttatgatc gactgctgga
    13381 tgtcgatccc tatacctatc gcctgatgcc ggaacttgcc gaaagctggg aagtactcga
    13441 caacggcgcg acctatcgct tccacctgcg tcgcgatgtt ccgtttcaaa aaaccgactg
    13501 gtttactccc actcgtaaaa tgaatgccga cgatgtggtg tttaccttcc agcgaatttt
    13561 tgaccgcaac aacccgtggc ataacgtcaa cggcagcaac ttcccctact tcgacagcct
    13621 gcaatttgcc gataacgtga aaagcgtccg caaactggat aatcataccg ttgagttccg
    13681 actcgcccag ccggatgctt cttttttgtg gcacctcgca acccattatg cttcggtcat
    13741 gtcggcagaa tatgcccgga agttagagaa agaagatcgc caggagcaac tcgaccgtca
    13801 accggtcggc accggtccgt atcagttgtc ggaataccgc gccgggcaat ttattcgcct
    13861 acaacgtcat gatgacttct ggcgcggtaa accgttaatg ccgcaggtag tggtggattt
    13921 aggctccggc ggcaccggac gtctgtcgaa actcctgacc ggggaatgcg acgttctggc
    13981 ctggcctgct gccagccagc tatccatttt gcgtgacgac ccgcgcttgc gtttaacgct
    14041 gcgtcctggg atgaacgtcg cctatctggc atttaacacc gccaaaccgc cgctaaataa
    14101 tcccgctgtc cgccatgcac tggcactggc gattaataac cagcgcctga tgcaatccat
    14161 ctattatggt acggctgaaa cggcggcctc tattttaccg cgcgcctcgt gggcctatga
    14221 caacgaggct aaaattactg aatacaatcc ggcgaaatcg cgcgaacagt tgaaggcgtt
    14281 ggggctggaa aacttaacgc tgaaactgtg ggtgcccaca cgttcgcagg cgtggaaccc
    14341 cagtccactg aaaactgccg aactgattca ggcggatatg gcgcaggttg gcgtaaaagt
    14401 ggtgattgtg ccggtagaag gtcgctttca ggaggcgcgg ttgatggata tgagccatga
    14461 tctgacgtta tccggttggg cgacggacag taacgacccg gacagtttct tccgtccttt
    14521 actgagctgc gcggcaattc attcacagac caacctcgcc cactggtgcg atccgaaatt
    14581 cgacagcgtg ttgcgtaagg cgctctcctc gcagcagctg gcggcgcgta ttgaagccta
    14641 tgacgaagcg cagagtattc tggcgcagga attgcccatt ttgccgctgg cgtcgtcatt
    14701 gcgtttgcag gcctatcggt acgatatcaa aggtctggta cttagcccgt ttggtaacgc
    14761 ctcctttgct ggggtgtatc gcgagaaaca ggatgaggtg aaaaaaccat gattatcttc
    14821 accttacgcc gcattttgtt attgattgtc accttgttcc tgctgacctt cgttggcttc
    14881 agcttgagct atttcacccc tcatgcgccg ttacaaggcg cgtcactgtg gaatgcctgg
    14941 gtgttctggt ttaacggcct gatccactgg gattttggtg tttccagcat taacggtcaa
    15001 ccgattgccg aacagttaaa agaggtcttc ccggcgacga tggaactgtg catcctcgcc
    15061 ttcggttttg cgctgattgt tggcatcccc gtggggatga ttgccgggat tacgcgccat
    15121 aagtggcagg ataacttgat caacgccatc gccttactgg gcttttcaat cccggtgttc
    15181 tggctggcgc ttctgttgac gctgttttgt tcactcacgc taggttggtt gcccgtttca
    15241 gggcgtttcg atctgctcta cgaagtgaaa ccgattaccg gttttgcgtt gattgatgcc
    15301 tggctttcgg actcaccatg gcgggatgaa atgatcatga gcgcaatccg ccatatgata
    15361 ttgcccgtga tcaccctgtc ggttgcgcca acaactgaag tgatccgcct gatgcgtatc
    15421 agcactatcg aagtgtatga ccagaactat gtaaaagcgg cggcgacccg cggtttgtcg
    15481 cgctttacta ttttgcgtcg ccacgttctg cataacgcgt taccgccggt tattcctcgc
    15541 ctgggcttac agttttccac catgctgacg ctggcgatga tcaccgaaat ggtttttagc
    15601 tggccgggtt tagggcgctg gttaattaac gccatccgcc agcaggatta cgcagccatt
    15661 tccgccggag tgatggtgtg tggctcactg gtcattattg ttaacgtgat ttctgatatt
    15721 ttgggtgcca tggctaaccc tctgaaacat aaggaatggt atgccttacg atagcgtata
    15781 cagcgaaaag cgcccgccgg gcacgctgcg taccgcctgg cgcaaatttt atagtgacgc
    15841 ctctgcgatg gtcggcctgt acggctgcgc ggggctggct gtactgtgta tttttggcgg
    15901 ctggtttgcg ccttacggca tcgaccagca atttctcggt tatcaattat tgccgccatc
    15961 atggtcgcgc tatggcgaag tttctttctt cctggggact gacgacctcg gacgcgatgt
    16021 tttaagccgt ttactgagcg gagctgcgcc aaccgtgggt ggcgcatttg tggtgacgct
    16081 tgccgcgacg atctgtggcc tagtactggg caccttcgcc ggggcgacac acggcctccg
    16141 ctcagcggtg cttaaccata ttctggatac cttactggcg atcccttcgc tgctgttggc
    16201 aattatcgtt gtagcgtttg ccggaccgag tttgtcccac gctatgtttg ctgtctggct
    16261 ggcattgctg ccgcgtatgg tacgttcgat ttacagcatg gtgcatgacg aactggaaaa
    16321 agagtacgtt atcgccgccc gtctggatgg cgcatcaacg ctgaatattc tctggtttgc
    16381 tgtgatgcca aacatcaccg ccgggctggt caccgagatc acccgcgcac tgtcgatggc
    16441 aattctcgat atcgccgcgc tgggctttct cgatctcggc gcacaactcc cctcgcctga
    16501 atggggagcg atgctcggtg atgcgctgga actgatttat gtcgccccgt ggactgtcat
    16561 gctgccaggt gcggcaatta tgattagcgt gttgttggtt aacctccttg gcgatggcgt
    16621 tcgtcgtgcg attattgcgg gggtggaata atgccattac tcgatattcg taacctgacc
    16681 attgaattta aaaccggtga tgagtgggtt aaagccgtcg accgggtaag tatgacctta
    16741 accgaaggtg aaatccgcgg tcttgttggt gaatccggtt ccggcaagag tttgattgcg
    16801 aaagcgattt gtggggtgaa taaagataac tggcgtgtta ttgctgaccg tatgcgtttt
    16861 gatgatatcg atttgctgcg tctctccgca cgcgaacggc gcaaactggt tggccataac
    16921 gtgtcgatga ttttccagga accgcagtcg tgtcttgacc cttcagaacg tgtgggtcgc
    16981 cagttgatgc aaaacatccc agcctggacc tataaaggcc gttggtggca gcgttttggc
    17041 tggcgcaaac gccgtgccat tgaactgctg caccgcgtgg ggattaaaga tcacaaagat
    17101 gcgatgcgca gttttcccta tgagttgacc gaaggtgaat gtcagaaagt gatgatagcc
    17161 attgcactgg cgaatcaacc gcgtctgctg attgctgacg aaccgaccaa ctcaatggag
    17221 ccaacaaccc aggcgcaaat ctttcgcctg ctgacgcgtc tcaaccaaaa cagcaatacc
    17281 actattttgc ttatcagcca tgacttacaa atgcttagcc aatgggcgga taaaattaac
    17341 gtgctttact gcggtcaaac agtggaaacc gcgccgagta aggagttggt gacgatgcca
    17401 catcatcctt atacccaggc gctgatccgc gcgataccag acttcggcag cgcgatgccg
    17461 cataaaagtc gcctcaatac gctgcccggc gctatcccac tgctggaaca gttaccgatt
    17521 ggttgtcgtc tggggccacg ttgcccgtat gcacaacgag aatgcattgt gacgccacgt
    17581 ttgacggggg cgaaaaatca tctctatgcc tgtcatttcc cgctgaacat ggagaaagag
    17641 tgagatgatc gaaacgctgc ttgaagtgcg taatttaagt aaaacgttcc gctaccggac
    17701 cggctggttt cgccgtcaga ccgtagaagc ggtaaaaccc ttgagcttta cgctacgtga
    17761 aggccagaca ctggcgatta ttggcgagaa tggttcgggt aaatccacgc tggcaaaaat
    17821 gctggcggga atgatagagc ctaccagcgg cgagttattg attgacgatc atccactgca
    17881 ttttggcgat tattccttcc gcagtcagcg tattcgcatg atttttcagg atccttcgac
    17941 ctcgttgaat ccccgtcaac gtatctcgca aattctggat tttccactgc gcctgaacac
    18001 cgacctggaa ccggaacagc gtcgcaaaca gattattgaa acgatgcgta tggttgggct
    18061 gctaccggat cacgtcagtt actatccgca tatgttggca cccggacaaa aacagcgtct
    18121 gggtctggcg cgcgcgctga tattgcgccc aaaagtcatt attgccgatg aagcactcgc
    18181 ttcactggat atgtcgatgc gttcgcagtt gattaatctg atgctggagt tacaggaaaa
    18241 acagggcatt tcgtatattt atgttaccca gcatatcgga atgatgaagc acattagcga
    18301 ccaggtgctg gtgatgcatc agggcgaggt tgtcgagcga ggcagcaccg cggatgtgct
    18361 ggcatcgccg ctgcatgaac tcaccaaacg gctgattgcc gggcactttg gcgaagcatt
    18421 gacagcggat gcgtggcgta aagatcgcta attttctgaa tcctccttcc agattatcca
    18481 cctcattctg acaagagatt aaatcttgtc agaatgaggt gatggataaa ataaaatcaa
    18541 atgcgcgtga tttaagacgc aatctcactt tgcaggaacg aaagctctgg cgatatcttc
    18601 gcagccgacg ttttggtgat ttcaaatttc gccgtcaaca tccggtgggg agctacattc
    18661 tcgattttgc ttgctgctcg gcgcgcgtag tcgttgagct ggatggtggg cagcatgatt
    18721 tggcagttgc ctatgatacc aggcgcacta gctggcttga gtcgcagggc tggaccgtgc
    18781 tgcgtttctg gaataacgag attgattgta atgaggaggc ggtgctggag attattctgc
    18841 aggaactgaa ccgccgatca ccctcaccct gaaagggcga gggggccgac cgagccgaat
    18901 agctgttgtg gtgaaaacat ggagactgtg ctggagaata ttcggcaagg tctgaaccat
    18961 cccagccatc gccataaaag ggttaggggc tgtatgagcc tgtttgttgc tggggtaaca
    19021 atatttgcac aatatggtcc cctcgcccct ctggggagag ggttagtgta aggggaaaag
    19081 cgcccaccct gccgcagcct gctccggtcg gacctagcaa ctatagctac tcacagccag
    19141 gttgattata ataaccattt atctgttcgt actgtttact aaaacgacga atcgcctgat
    19201 tttcaggcac aacaagcatc aacaataagg attaaagcta tgggttttct ttccggtaag
    19261 cgcattctgg taaccggtgt tgccagcaaa ctatccatcg cctacggtat cgctcaggcg
    19321 atgcaccgcg aaggagctga actggcattc acctaccaga acgacaaact gaaaggccgc
    19381 gtagaagaat ttgccgctca attgggttct gacatcgttc tgcagtgcga tgttgcagaa
    19441 gatgccagca tcgacaccat gttcgctgaa ctggggaaag tttggccgaa atttgacggt
    19501 ttcgtacact ctattggttt tgcacctggc gatcagctgg atggtgacta tgttaacgcc
    19561 gttacccgtg aaggcttcaa aattgcccac gacatcagct cctacagctt cgttgcaatg
    19621 gcaaaagctt gccgctccat gctgaatccg ggttctgccc tgctgaccct ttcctacctt
    19681 ggcgctgagc gcgctatccc gaactacaac gttatgggtc tggcaaaagc gtctctggaa
    19741 gcgaacgtgc gctatatggc gaacgcgatg ggtccggaag gtgtgcgtgt taacgccatc
    19801 tctgctggtc cgatccgtac tctggcggct tccggtatca aagacttccg caaaatgctg
    19861 gctcattgcg aagccgttac cccgattcgc cgtaccgtta ctattgaaga tgtgggtaac
    19921 tccgcggcat tcctgtgctc cgatctctct gccggtatct ccggtgaagt ggtccacgtt
    19981 gacggcggtt tcagcatcgc tgcaatgaac gaactcgaat tgaaataatc attctgttgg
    20041 taaatattgg gcggcgttct gccgcccgtt atctctgtta tacctttctg atatttgtta
    20101 tcgccgatcc gtctttctcc ccttcccgcc ttgcgtcagg ataacgattt cctttacgac
    20161 caaggagcgc ccatggaaca acgccacatc accggcaaaa gccactggta tcatgaaacg
    20221 caatccagta ctgcggagta tgacgttctg cctctggtcc cggaagccgc aaaggtcagc
    20281 gatccctttc tgctcgacgt gatccttgat gaagaaacgc tagctccctt cctttcatgg
    20341 ctggtccctg cgcgcgttct tgcagtggaa ttgttccctg accagcttac cgtgacccgt
    20401 tcacagacct tcaccgctta tgaacgcttg tctacggccc tgacggttgc tcaggtttgc
    20461 ggcgtccagc ggttatgtaa ctactattcg gcgcgactta cgccgctccc cgggcctgat
    20521 tcctctaggg aaagcaatca taggttggca caaatcacgc aatatgcccg ccaactggct
    20581 agctcgcctt ctattatcga caaccgatcg cgccagcatc tgaatgacgt cggtcttact
    20641 gccagggact gtgtaatcat taaccaaatc attggtttta ttggctttca ggcgcggacc
    20701 attgcgacat ttcaggctta tctcgggcac ccggtacgct ggttacccgg tctggaaata
    20761 caaaactacg ccgacgcgtc actgtttgct gatgaatcaa tacgctggcg aagcagctat
    20821 gaggtggaaa aactacctga agagtacaca aaaagttcaa cagcagaact ttgccaactg
    20881 gccgaaacac actctctcca ccctatttca ctttcccttc tcgaaaggtt gttaaacagt
    20941 acacgggtta atacacagcc ggataataag cttgcggcgt tgttatgcgc gcggataaat
    21001 ggcagtcctg cttgttttgc cgcctgtatg gattcatcaa atgaatataa aaaaatcagc
    21061 ccccttctgc gcaagggcga aaatgaaatt aaccaatggg ctgaccgtca ttctgttgag
    21121 cacgctaccg ttcaggcgat acaatggctg acccgagcac ccgatcgctt tagcaccgcc
    21181 cagttcagcc ctttactcga acacgaacaa tcatcaacgc agattattaa tctgctggta
    21241 tggagcgggc tgtgtggctg gataaatcgc ttaaaaatcg cgttgggtga gacatattaa
    21301 ccttgccgcg tcagacagat tcgcgtaaaa ctgtcagccg ctctaatggc caccaaaata
    21361 gacaattatg tttcaggaca acccgctgct agcgcagctt aaacagcaac tgcattccca
    21421 gacgccacgc gctgaagggg tggtaaaagc cacagaaaaa ggctttggct tcctggaagt
    21481 cgacgcgcaa aaaagttatt tcattccgcc gccgcagatg aaaaaagtca tgcatggcga
    21541 ccgaattatc gcggtgatcc acagtgaaaa agaacgtgaa tccgcagagc cagaagaact
    21601 ggttgaaccg ttcctgactc gtttcgtggg taaagttcag ggcaaaaatg accgtctggc
    21661 catcgttcct gatcatccac tcttaaaaga cgccattcct tgccgcgcag cccgtggcct
    21721 gaaccacgag tttaaagaag gcgactgggc ggttgccgaa atgcgccgtc atccgctgaa
    21781 aggcgatcgt tctttctatg ctgaattgac acaatacatc acttttggtg acgaccactt
    21841 tgtaccgtgg tgggttacac ttgcgcgcca taatctggaa aaagaagcac cagacggcgt
    21901 cgctaccgaa atgctcgatg aaggtctggt tcgtgaagat ctgaccgcgc tggattttgt
    21961 caccatcgac agtgccagca cagaagatat ggatgacgcc cttttcgcta aggcgttgcc
    22021 ggatgacaaa cttcagctga ttgtggcgat tgccgatcca accgcgtgga ttgctgaagg
    22081 cagcaagctg gacaaagccg cgaaaattcg cgcattcacc aactatctgc ctggcttcaa
    22141 catccctatg ctgcctcgcg agctttctga cgatctctgc tcactgcgcg ccaatgaagt
    22201 ccgcccggta ctggcatgcc gcatgacgct ctccgctgat ggcgccattg aagataatat
    22261 cgaattcttt gccgccacca tcgaatccaa agcaaagctg gtgtatgacc aggtttctga
    22321 ctggctggaa aataccggtg actggcagcc tgaaagtgaa gcaattgccg aacaagtccg
    22381 tttgctagcg caaatttgcc aacgccgcgg cgagtggcgt cataaccacg cactggtgtt
    22441 taaagatcgc ccggattacc gctttattct cggtgaaaaa ggtgaagtgc tggatatcgt
    22501 cgccgagcct cgtcgcattg ccaaccgtat cgtcgaagaa gcgatgattg ccgctaacat
    22561 ttgtgcggcc cgcgtactgc gcgataagct cggttttggc atctataacg tgcatatggg
    22621 ctttgatccg gcgaatgccg acgcgctggc agcgttgctg aaaacgcacg gtctgcatgt
    22681 cgatgccgaa gaagtgctca cgctggacgg tttctgcaaa ctgcgtcgtg aactggacgc
    22741 gcaaccaact ggtttcctcg acagccgcat tcgtcgcttc cagtcatttg ctgaaattag
    22801 cactgaaccc ggtcctcact ttggcctcgg tctggaagca tacgccacct ggacttcgcc
    22861 gatccgtaaa tatggcgaca tgatcaacca ccgtctgctg aaagcggtta tcaaaggcga
    22921 aactgcgacg cgcccacagg atgaaatcac tgtccaaatg gccgagcgtc gccgtctcaa
    22981 ccggatggca gaacgtgatg ttggtgactg gttatacgca cgcttcctga aagacaaagc
    23041 cgggaccgac acccgtttcg cagcggaaat tgtcgatatc agccgtggcg gcatgcgtgt
    23101 gcgtttggtt gataacggcg ctatcgcctt tattccggca cctttcttac acgctatgcg
    23161 cgatgaactg gtttgcagcc aggaaaacgg cactgtacaa attaaaggtg aaacggttta
    23221 caaagtaact gacgttattg acgtcaccat tgccgaagtc cgcatggaaa cccgcagcat
    23281 tattgcgcgc ccggtcgcgt aatctccttt cacggcctat tcctcatgga tgggccgttt
    23341 atttccccgc tctaccttcg ttatatccag gcagattttt taactgactt tcgtttgaaa
    23401 actggcgttt ttccaaaact ggattacaaa taaatatata aaaaaacaat gcgtttagcc
    23461 gccgttaatt tcatgtaagt
//
LOCUS       DAJVUP010000054        23030 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.054, whole genome shotgun sequence.
ACCESSION   DAJVUP010000054 DAJVUP010000000
VERSION     DAJVUP010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23030
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.054"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..562)
                     /locus_tag="OQQ75_001926"
     CDS             complement(<1..562)
                     /locus_tag="OQQ75_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418580.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1976273.1"
                     /translation="MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIF
                     SALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVST
                     SAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARIT
                     AVGGIAVMCLNLVLLLVSITILLLNGG"
     gene            complement(781..1758)
                     /gene="epmA"
                     /locus_tag="OQQ75_001927"
     CDS             complement(781..1758)
                     /gene="epmA"
                     /locus_tag="OQQ75_001927"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HCS1976274.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLNLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            2083..3891
                     /gene="frdA"
                     /locus_tag="OQQ75_001928"
     CDS             2083..3891
                     /gene="frdA"
                     /locus_tag="OQQ75_001928"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HCS1976275.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRMAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3884..4618
                     /gene="frdB"
                     /locus_tag="OQQ75_001929"
     CDS             3884..4618
                     /gene="frdB"
                     /locus_tag="OQQ75_001929"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur protein"
                     /protein_id="HCS1976276.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4629..5024
                     /gene="frdC"
                     /locus_tag="OQQ75_001930"
     CDS             4629..5024
                     /gene="frdC"
                     /locus_tag="OQQ75_001930"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HCS1976277.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPDAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            5035..5394
                     /gene="frdD"
                     /locus_tag="OQQ75_001931"
     CDS             5035..5394
                     /gene="frdD"
                     /locus_tag="OQQ75_001931"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HCS1976278.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5457..6590
                     /locus_tag="OQQ75_001932"
     CDS             5457..6590
                     /locus_tag="OQQ75_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS1976279.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6679..7212
                     /gene="blc"
                     /locus_tag="OQQ75_001933"
     CDS             6679..7212
                     /gene="blc"
                     /locus_tag="OQQ75_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS1976280.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(7209..7526)
                     /gene="sugE"
                     /locus_tag="OQQ75_001934"
     CDS             complement(7209..7526)
                     /gene="sugE"
                     /locus_tag="OQQ75_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS1976281.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7708..7854)
                     /gene="ecnB"
                     /locus_tag="OQQ75_001935"
     CDS             complement(7708..7854)
                     /gene="ecnB"
                     /locus_tag="OQQ75_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS1976282.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(7965..8090)
                     /gene="ecnA"
                     /locus_tag="OQQ75_001936"
     CDS             complement(7965..8090)
                     /gene="ecnA"
                     /locus_tag="OQQ75_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS1976283.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(8142..8708)
                     /gene="efp"
                     /locus_tag="OQQ75_001937"
     CDS             complement(8142..8708)
                     /gene="efp"
                     /locus_tag="OQQ75_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS1976284.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8750..9799
                     /gene="epmB"
                     /locus_tag="OQQ75_001938"
     CDS             8750..9799
                     /gene="epmB"
                     /locus_tag="OQQ75_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS1976285.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            10173..11042
                     /locus_tag="OQQ75_001939"
     CDS             10173..11042
                     /locus_tag="OQQ75_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjeJ family protein"
                     /protein_id="HCS1976286.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL
                     RVQSTSKTAPQAK"
     gene            complement(11245..11598)
                     /locus_tag="OQQ75_001940"
     CDS             complement(11245..11598)
                     /locus_tag="OQQ75_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HCS1976287.1"
                     /translation="MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQ
                     LIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFV
                     PTDSQIIGQVYKCPN"
     gene            complement(11736..13382)
                     /gene="groL"
                     /locus_tag="OQQ75_001941"
     CDS             complement(11736..13382)
                     /gene="groL"
                     /locus_tag="OQQ75_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120975.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HCS1976288.1"
                     /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITE
                     GLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK
                     LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP
                     FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID
                     GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAP
                     LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA
                     SVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM"
     gene            complement(13426..13719)
                     /locus_tag="OQQ75_001942"
     CDS             complement(13426..13719)
                     /locus_tag="OQQ75_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HCS1976289.1"
                     /translation="MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVG
                     NGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA"
     gene            13995..15251
                     /gene="yjeH"
                     /locus_tag="OQQ75_001943"
     CDS             13995..15251
                     /gene="yjeH"
                     /locus_tag="OQQ75_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine/branched-chain amino acid
                     transporter"
                     /protein_id="HCS1976290.1"
                     /translation="MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAAQVAGNNSLWA
                     WPVLIILVFPIAIVFAILGRHYPCAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPA
                     ALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRSASSSANLQTVIAGLIVALIV
                     AIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFP
                     RALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGY
                     LACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIH
                     ALEISLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKS
                     LYALIVLAGLWLLLPKRKTPENGIIT"
     gene            complement(15267..15743)
                     /gene="fxsA"
                     /locus_tag="OQQ75_001944"
     CDS             complement(15267..15743)
                     /gene="fxsA"
                     /locus_tag="OQQ75_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418564.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HCS1976291.1"
                     /translation="MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM
                     SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP
                     PVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD"
     gene            16080..17516
                     /gene="aspA"
                     /locus_tag="OQQ75_001945"
     CDS             16080..17516
                     /gene="aspA"
                     /locus_tag="OQQ75_001945"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313147.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HCS1976292.1"
                     /translation="MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDI
                     PEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA
                     GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL
                     IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNI
                     QRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGA
                     YVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE
                     VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCIN
                     GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE
                     AELDDIFSVQNLMHPAYKAKRYTDESEQ"
     gene            17634..18935
                     /gene="dcuA"
                     /locus_tag="OQQ75_001946"
     CDS             17634..18935
                     /gene="dcuA"
                     /locus_tag="OQQ75_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuA"
                     /protein_id="HCS1976293.1"
                     /translation="MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGN
                     IPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFA
                     GTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH
                     GISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIE
                     IKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVI
                     CKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLA
                     VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ
                     MDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML"
     gene            19051..19389
                     /gene="cutA"
                     /locus_tag="OQQ75_001947"
     CDS             19051..19389
                     /gene="cutA"
                     /locus_tag="OQQ75_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation tolerance protein CutA"
                     /protein_id="HCS1976294.1"
                     /translation="MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIP
                     GATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTD
                     YLSWLNASLR"
     gene            19365..21062
                     /gene="dsbD"
                     /locus_tag="OQQ75_001948"
     CDS             19365..21062
                     /gene="dsbD"
                     /locus_tag="OQQ75_001948"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HCS1976295.1"
                     /translation="MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFTFDFQQN
                     QHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTL
                     PVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAASQPVSVSQQEQHT
                     AQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA
                     LTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLT
                     LMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL
                     GMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSA
                     LGVAFFGWAFITSLQAKRGWMRVVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNF
                     TQIKTVDELNHALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA
                     NITANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP"
     gene            21099..21674
                     /locus_tag="OQQ75_001949"
     CDS             21099..21674
                     /locus_tag="OQQ75_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1976296.1"
                     /translation="MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPD
                     KEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKQLARYQALSECVKNNRYPGCLFIA
                     ACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRML
                     VNRSQADVDTAHRLAEDILRFARCRQGGALT"
     gene            21781..21856
                     /locus_tag="OQQ75_001950"
     tRNA            21781..21856
                     /locus_tag="OQQ75_001950"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21814..21816,aa:Phe,seq:gaa)
     gene            22054..>23030
                     /locus_tag="OQQ75_001951"
     CDS             22054..>23030
                     /locus_tag="OQQ75_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1976297.1"
                     /translation="MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRI
                     LGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIA
                     RRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEI
                     ASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGS
                     YKGQTVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGS
                     KMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISENVMNAS"
BASE COUNT         5738 a         5943 c         5700 g         5649 t
ORIGIN      
        1 gcccaccatt taataacaaa atagtaatgc ttactaacag caatactaaa ttcagacaca
       61 ttactgcaat accgcccacc gcagtaatgc gggcaatttt attaatcccc tttgaagcaa
      121 cgacggtgac cagaatcatc catgctactg ccagcagacc aaccacctgc gtaggctcca
      181 gtccggcaat acgccagtgc tgggtcatgt cgctaccata gaggaatgtt gagaacggta
      241 cccaaacttt cgcggaggta ctcaccatcc agatgatata agaggaaaac cacataaacg
      301 taccaatgaa ggcaaaacgt ggtccgacac tattattcat ccaggaatag ataccacctt
      361 cttctttgcg ataagcagct cccatttcag ccatcattaa ggcgaatgga ataaagaata
      421 acaatgcaga aaatatataa aagggaatcg cactataacc cattaagtaa taagccgatg
      481 ggctattggc aaatccaaat acggaagtaa agatcatcaa tatgagtcct atcagactca
      541 tcttttttat cgtgtgaggc atgaaaccat ccttcatttc agcgcgtgta taacacgtgc
      601 ccactgaact gcactgcgca acattgagca ggcagcgtaa aaaccaatac agaattgata
      661 cccggatgat atcaaatatc cagtcttaaa ttgtggcctt taacggaaaa atgaaaacat
      721 atgctacaga atggcgctta tcacgccatt cttcgctgtt aattcagtaa tttttcagaa
      781 ttatgcccgg tcaacgctaa aggcgatgac ttcagccagt gtctccgcgc ccagcgccaa
      841 catcaccaga cgatcaacac ctaatgccac gccggaacag tcaggcatac cgactttcaa
      901 ggcttcaatc agattctggt caatggggtg ctgcggcaaa ccgcgcgccg cgcgcttacg
      961 gttatcttgt tcaaagcgtt gttgctgctc acgggcatcc gttaattcat ggaaaccatt
     1021 cgccagctca atacctttat aataaacctc aaagcgttca gcgacccgat gatcttcggt
     1081 actgatttgc gccagtgatg cctggctggc tggaaagtgg tacacaaagg tcggtttttc
     1141 tttgccaata tttggctcta cgccaaaggt aaacagcaat tgtagcaacg tgtcgcggtc
     1201 ttcttcggta tcagcaacgt tactcaaatt cagtttcgct gcgacttccc gcagttgcgt
     1261 tttgtcggca gagagcgggt caatttccag ataacgcaag aaagcttgtt gataagaaag
     1321 gctttctgct gccgggcagt ccagcacctg ttgtaagaga tcgtccacct cgttcatcaa
     1381 ccggtacata tcatagtgcg gtcgatacca ctcaagcata gtgaactcag ggttgtgata
     1441 acgccccatc tcttcattac ggaagctgcg gcacagctgg aataccggcc cacaaccggc
     1501 aaccagcagg cgtttcatat ggtattccgg gctggtcatt aaccagagat tcatcccctg
     1561 cgaatgcccg gggccaacga aacgtgtctc aaacgggacc aaatgaatat cggttaccgt
     1621 cgcctggctc atacaaggcg tctccacctc cagcactcca cgatcagcaa agaaacgacg
     1681 gatctccgcc ataatcgccg cgcgttttaa taagttagga atggatgcgc tcggctgcca
     1741 ggatgccgtt tcgctcatag ttaaatctcc agtttttgac aagggcacga agtctactcg
     1801 caacgcgacg gcgagacaaa ttttacgcag gaatcaaaca gcggtgggca gtgactaaaa
     1861 aaagcacgat ctgatggttt agtaattaaa ttaatcatct tcagtgataa tttagccctc
     1921 ttgcgcacta aaaaaatcga tctcgtcaaa tttcagactt atccatcaga ctatactgtt
     1981 gtacctataa aggagcagtg gaatagcgtt cgcagaccgt aactttcagg cacttaccct
     2041 gaagtacggg gctgtgggat aaaaacaatc tggaggaatg tcgtgcaaac ctttcaagcc
     2101 gatcttgcca ttgtaggcgc cggtggcgcg ggattacgtg ctgcaattgc tgccgcgcag
     2161 gcaaatccaa atgcaaaaat cgcactaatc tcaaaagtat acccgatgcg tagccatacc
     2221 gttgctgcag aagggggctc cgccgctgtc gcgcaggatc atgacagctt cgaatatcac
     2281 tttcacgata cagtagcggg tggcgactgg ttgtgtgagc aggatgtcgt ggattatttc
     2341 gtccaccact gcccaaccga aatgacccaa ctggaactgt gggggtgccc atggagccgt
     2401 cgcccggatg gtagcgtcaa cgtacgtcgc ttcggcggca tgaaaatcga gcgcacctgg
     2461 ttcgccgccg ataagaccgg cttccatatg ctgcacacgc tgttccagac ctctctgcaa
     2521 ttcccgcaga tccagcgttt tgacgaacat ttcgtgctgg atattctggt tgatgatggt
     2581 catgttcgcg gcctggtagc aatgaacatg atggaaggca cgctggtgca gatccgtgct
     2641 aacgcggtcg ttatggctac tggcggtgcg ggtcgcgttt atcgttacaa caccaacggc
     2701 ggcatcgtta ccggtgacgg tatgggtatg gcgctaagcc acggcgttcc gctgcgtgac
     2761 atggaattcg ttcagtatca cccaaccggt ctgccaggtt ccggtatcct gatgaccgaa
     2821 ggctgccgtg gtgaaggcgg tattctggtc aacaaaaatg gctaccgtta tctgcaagat
     2881 tacggcatgg gcccggaaac tccgctgggc gagccgaaaa acaaatatat ggaactgggt
     2941 ccacgcgaca aagtttctca ggccttctgg cacgaatggc gtaaaggcaa caccatctcc
     3001 acgccgcgtg gcgatgtggt ttatctcgac ttgcgtcacc tcggcgagaa aaaactgcat
     3061 gaacgtctgc cgttcatctg cgaactggcg aaagcgtacg ttggcgtcga tccggttaaa
     3121 gaaccgattc cggtacgtcc gaccgcacac tacaccatgg gcggtatcga aaccgatcag
     3181 aactgtgaaa cccgcattaa aggtctgttc gccgtgggtg aatgttcctc tgttggtctg
     3241 cacggtgcaa accgtctggg ctccaactcc ctggcggaac tggtggtctt cggccgtatg
     3301 gccggtgaac aagcgacaga gcgtgcagca actgccggta atggcaacga agaggcaatt
     3361 gaagcgcagg cagctggcgt tgaacaacgt ctgaaagatc tggttaacca ggatggcggc
     3421 gaaaactggg cgaagatccg cgacgaaatg ggcctagcaa tggaagaagg ttgcggtatc
     3481 taccgtacgc cggaactgat gcagaaaacc atcgacaagc tggcagagct gcaggaacgc
     3541 ttcaagcgcg tgcgcatcac cgacacctcc agcgtgttca acaccgacct gctctacacc
     3601 attgaactgg gccacggtct gaacgttgct gaatgtatgg cgcactccgc aatggcacgt
     3661 aaagagtccc gcggcgcaca ccagcgtctg gacgaaggtt gcaccgagcg tgacgacgtc
     3721 aacttcctca aacacaccct cgccttccgc gatgctgatg gcacgactcg cctggagtac
     3781 agcgacgtga agattactac gctgccgcca gctaaacgcg tttacggtgg cgaagcggat
     3841 gcagccgata aggcggaagc agccaataag aaggagaagg cgaatggctg agatgaaaaa
     3901 cctgaaaatt gaggtggtgc gctataaccc ggaagtcgat accgcaccgc atagcgcatt
     3961 ctatgaagtg ccttatgacg caactacctc attactggat gcgctgggct acatcaaaga
     4021 caacctggca ccggacctga gttaccgctg gtcctgccgt atggcgattt gtggttcctg
     4081 cggcatgatg gttaacaacg tgccaaaact ggcatgtaaa accttcctgc gtgattacac
     4141 cgacggtatg aaggttgaag cgttagctaa cttcccgatt gaacgcgatc tggtggtcga
     4201 tatgacccac ttcatcgaaa gtctggaagc gatcaaaccg tacatcatcg gcaactcccg
     4261 caccgcggat cagggtacta acatccagac cccggcgcag atggcaaagt atcaccagtt
     4321 ctccggttgc atcaactgtg gtctgtgcta cgccgcgtgc ccgcagtttg gcctgaaccc
     4381 agagttcatc ggtccggctg ccattacgct ggcgcatcgt tataacgaag atagccgcga
     4441 ccacggtaag aaggagcgta tggcgcagtt gaacagccag aacggcgtat ggagctgtac
     4501 tttcgtgggc tattgctccg aagtctgccc gaaacacgtc gatccggctg cggccattca
     4561 gcagggcaaa gtagaaagtt cgaaagactt tcttatcgcg accctgaaac cacgctaagg
     4621 agtgcaacat gacgactaaa cgtaaaccgt atgtacggcc aatgacgtcc acctggtgga
     4681 aaaaattgcc gttttatcgc ttttacatgc tgcgcgaagg cacggcggtt ccggctgtgt
     4741 ggttcagcat tgaactgatt ttcgggctgt ttgccctgaa aaatggcccg gacgcctggg
     4801 cgggattcgt cgacttttta caaaacccgg ttatcgtgat cattaacctg atcactctgg
     4861 cggcagctct gctgcacacc aaaacctggt ttgaactggc accgaaagcg gccaatatca
     4921 ttgtaaaaga cgaaaaaatg ggaccagagc caattatcaa aagtctctgg gcggtaactg
     4981 tggttgccac catcgtaatc ctgtttgttg ccctgtactg gtaaggagcc tgagatgatt
     5041 aatccaaatc caaagcgttc tgacgaaccg gtattctggg gcctcttcgg ggccggtggt
     5101 atgtggagcg caattattgc gccggtgatg atcctgctgg tgggtattct gctgccactg
     5161 gggctgtttc cgggtgatgc gctgagctac gagcgcgttc tggcgttcgc gcagagcttc
     5221 attggtcgcg tattcctgtt cctgatgatc gttctgccgc tgtggtgtgg tttacaccgt
     5281 atgcaccacg cgatgcacga tctgaaaatt cacgtgcctg cgggcaaatg ggttttctac
     5341 ggtctggctg ctatcctgac agttgtcacg ctgattggta tcgttacaat ctaacgtatc
     5401 gccaatgtaa atccggcccg cctatggcgg gccgttttgt atggaaacca gaccttatgt
     5461 tcaaaacgac gctctgcgcc ttattaatta ccgcctcttg ctccacattt gctgcccctc
     5521 aacaaatcaa cgatattgtg catcgcacaa ttaccccgct tatagagcaa caaaagatcc
     5581 ccggtatggc ggtggcggta atttatcagg gtaaacctta ttactttacc tggggctatg
     5641 cggacatcgc caaaaagcag cccgtcacac agcaaacgtt gtttgagtta ggttcggtca
     5701 gcaaaacatt tacgggcgtg cttggtggcg atgctattgc tcgaggggaa atcaagttaa
     5761 gcgatcccgc aacaaaatac tggcctgaac ttaccgctaa acagtggaat gggatcacac
     5821 tattacatct tgcgacctac accgctggcg gcctgccatt gcagatgccg gatgaagtga
     5881 aatcctcaag cgacttgctg cgcttctatc aaaactggca gcctgcatgg gctccaggaa
     5941 cacaacgtct gtatgccaac tccagtatcg gtttgttcgg cgcactggct gtgaagccgt
     6001 ctggtttgag ttttgagcag gcgatgcaaa ctcgtgtctt ccagccactc aaactcaacc
     6061 atacgtggat taatgtaccg cccgcagaag aaaagaatta cgcctgggga tatcgcgaag
     6121 gcaaggcagt tcatgtttcg ccaggggcgt tagatgctga agcttatggt gtgaagtcga
     6181 ccattgaaga tatggcccgc tgggtgcaaa gcaatttaac cccccttgat atcaatgaga
     6241 aaacgcttca acaagggata caactggcac aatctcgcta ctggcaaacc ggcgatatgt
     6301 atcagggcct gggctgggaa atgctggact ggccggtcaa tcctgacagc atcattaacg
     6361 gcagtgacaa taaaattgca ctggcagcac gcccggtaaa agcgattaag cccccaactc
     6421 ctgcagtacg cgcatcatgg gtacataaaa cgggggcgac cggcggattt ggtagctatg
     6481 tcgcgtttat tccagaaaaa gagctgggta tcgtgatgct ggctaacaaa aactatccca
     6541 atccagcgag agtcgccgcc gcctgtcaga ttctcaacgc tctacagtaa aatttcatcg
     6601 ggtccgaatt ttcggacctt ttctgcgctt ttccttgctg tcatctacac ttagaaaaaa
     6661 accagtaagg aaacatttat gcgcctgctc cctctcgttg ccgcagcgac agctgcattt
     6721 ctggtcgttg cctgcagttc tcctacgccg ccgcgtggcg tgacagtagt gaataatttc
     6781 gacgctaaac gctatctcgg tacctggtat gagattgccc gttttgatca ccgttttgaa
     6841 cgtggactgg aaaaagtcac cgcaacatac agtctgcgtg atggcggcgg cctgaatgtc
     6901 atcaataaag gctataaccc tgacagagaa atgtggcagc agagtgaagg gaaagcgtac
     6961 tttaccggcg caccaacacg cgctgcgctg aaagtgtcat tctttggtcc tttctatggc
     7021 ggttataacg tcattgcact tgatcgggaa taccgccatg cgctggtttg cggcccggac
     7081 cgcgactacc tgtggatact ctcccgcacg ccaaccattt ctgacgaagt gaaacaggag
     7141 atgctggcag tcgcgacccg ggaagggttt gatgtcagta agtttatttg ggtacagcag
     7201 cccggtagtt agtgagtgct gagtttcaga ccaataatcc ccaatacgat taacgccaga
     7261 ctcgccaggc gcatcgggtt agcggactca ccgagcagca caatgccggt gatagccgcg
     7321 ccgactgcgc caatacccgt ccacacggca taagccgtcc ctactggtaa cgatttcatc
     7381 gcccaggcaa gtagcgccat actgacaatc atcgccgtca cggtaataac actcggcgtc
     7441 aaacgactaa agccgtgggt atatttcagg ccaacggccc ataccacttc cagcagacca
     7501 gcaataacta agataatcca ggacatatca ggctccggag aattggggcc gtccccggtg
     7561 aaaagacgcg tttgcaggtc gtcctgcaaa gctgatggtt gaacggatat tttgccaggt
     7621 ggcaggggaa tttcaactat taccttagtg actatcgcag aaaaaacaaa cggcacgaca
     7681 cagctgtcgt accgttattg cttattgcta ttgctgcgct ttcgttgctg cgccagaaat
     7741 cgcgttaccg ccatcagaaa tgtcttcacc aacgccacgc gtggtgttgc aggcagttaa
     7801 tactgttgaa agcaccagaa cagaaaagat cgctgcaatt gtcttcttca ccataacgtc
     7861 ttccttttag gtaatgttat ttatgtttgc ctatagcaaa ttaataatag acaacatcgc
     7921 caaaaatgac ggaaatctga tgatttttcg gaagagaaga aaaattagct ggcagcgcga
     7981 gagatggagt tgccgagatg tttgatgtct tcgccgaaac cgcgagcggt gttacagccc
     8041 gtgagcagcg tactggcaag caaaacaaga acgataaggc gtttcatcat ctctgacctg
     8101 aataagtgat ggtgcagcct gcaggccgca ccacaaccgc attacttcac gcgagagacg
     8161 tattcaccag agcgggtatc cactttgatg acttcgccga tttgtacgaa cagcggaacc
     8221 ttaaccacag cgccagtaga cagggtagcc ggtttgccgc cagtacctgc ggtatcacct
     8281 ttcaggcccg gatcggtatc aacgatttcc agttcaacga agttcggcgg agtaacggag
     8341 atcggctgac cattccacag agttacgata cactctgcct gatccagcag ccatttagcg
     8401 ttatcgccaa ttgcttttgc atcagcagac agctgctcga aagtttcgtt gttcatgaag
     8461 tgccagaact caccgtcgtt gtacaggtaa gtcaggttca tatcgacaac atcagcgcct
     8521 tcagcggaat cagtagattt gaaggttttt tctacgcgag taccggtcag cagacgacgc
     8581 agtttaacgc gagcaaatgc ctggccttta cccggtttta cgaattcact cgcttcaacc
     8641 gcgtaaggtt cgccgtctaa catgatttta agaccagcac gaaaatcgtt gctatagtac
     8701 gttgccataa ggccctctga aatttgttaa ttggtagcta agccacaaaa tggcgcatat
     8761 tgtaacccta aataccccat ccagagaaga ttggttaacg caacttgccg atgttgtgac
     8821 cgatcctgat gaacttctgc gtcttttgaa tatagacgcg gacgaaaaac tgttggccgg
     8881 acgcagcgcc aaaaagctgt ttgccctgcg tgtgccccgc tcatttatcg atcgcatgga
     8941 gaaaggcaat ccggacgatc ctcttttgcg tcaggtactt acctcgcaag atgagtttgt
     9001 cgtcgcgtcc ggattctcca ccgacccact ggaagaacag cacagcgtag tgcctggttt
     9061 gttgcataaa taccacaacc gggcgctttt gctggtcaaa ggcggctgcg cggtaaattg
     9121 ccgctattgc ttccgtcgcc acttccccta tgccgaaaat cagggcaaca agcgtaactg
     9181 gcagactgca cttgagtatg ttgctgcgca tccggaactg gacgagatga ttttctccgg
     9241 cggcgatccg ctgatggcga aagatcacga gctggactgg ttgctcacac aactggaagc
     9301 catcccgcat atcaaacgtc tgcggattca cagtcgtctg ccgattgtga tcccggcacg
     9361 catcacagat gcgctggttg aacgcttttc acattctacg ctgcaaatcc tgctggtgaa
     9421 tcacatcaac catgccaatg agatagatga aacattccgt caggcgatgg ctaagttgcg
     9481 ccgggtaggc gttactttgc tgaaccagag cgttctgtta cgtgatgtga acgataacgc
     9541 acaaacgctg gcaaacctga gtaatgcgtt gttcgatgcc ggcgtgatgc cgtattacct
     9601 gcatgtgctc gataaagtac agggcgcagc gcattttatg gtgagtgatg acgaagcacg
     9661 gcagattatg cgtgagttgc tgacattggt gtcgggatat ctggtgccga aactggcgcg
     9721 agaaattggc ggcgaaccca gcaaaacgcc gctggatctc cagctacgcc agcagttact
     9781 gattaaacag ggaagttaaa cattaaaatt gcctgatgcg ctacgcttat caggcctaca
     9841 tcgtgcattg aaattgaatg gatttgcaat gaactgtagg ccggataagg cgtttacgcc
     9901 gcatccggca agagcaacaa acgcaagtac agcaacctgt cattaaactg agaaatttaa
     9961 tctttgcccg ttgcataacc tttaattatt catatgcatt gctgttgtta ctttttatat
    10021 agctaacacc aataattaac ctttcttttc tgtttatata gagtgagcac ggctatttat
    10081 gttattttaa caactattac taccaagccc atttatctgg cttataaatt aaaattaatt
    10141 atttaattga gaaatggtta gggagaacct acatggccat aagcatcaag ggtgttaata
    10201 ccggtgttat tcgcaagagt aataatttca ttgcactggc gctgaaaatt aaagaacctc
    10261 gcaataaaga atcgttgttc tttatgtctg tcatggaact gcgcgacctg ctgattgcgc
    10321 tggaaagtcg tctgcatcaa aagcataaac tggatgctgc tgcacgcctt cagtatgagc
    10381 aagctcgcga taaagtcatt aagaaaatgg cagaaaacat cccagaaatt ctggttgatg
    10441 agcttaaaaa tgccgatatt aatcgtcggg ttaacacgct ggaacttacc gataatcaag
    10501 gcgaaaatct taccttcgta ttaacgctac atgacggtag caaatgtgag ttagtcgtca
    10561 atgagttgca gattgaaatg ctagcgcgag caatcattca tgcaattaat aatgcggaaa
    10621 tgcgtgaact ggcattacgt attacctcac tgttagattt cctgccgtta tatgacgttg
    10681 actgccagga aaatggcaat ctggaatatg acacctattc ccaaccggaa tggaaacata
    10741 acttgttcga ccattatctg gcggtgcttt accgctttaa agatgaaagt ggcaaagaac
    10801 aatttagcgg cgcagtggtg aaaacgcgtg aagcaacgcc gggtaaagaa gtagaggcga
    10861 tcactcgccg aatgcttgat ttcagcccac gactgaaaaa actcgcgggt gtgccatgtc
    10921 aggtctatgt tcgcaccgta gcggcgaata acgcccaacc gctaacccag gatcaatgct
    10981 tacgcgcgct gcatcactta cgtgttcaat ccaccagcaa aactgcacca caggcgaaat
    11041 aatctcatct ttgctaatgc gaggctggag ccatccagcc tgaaatgact gataacgtga
    11101 tcgttggtca tgccggatgc ggcgtaaacg ccttatccgg cctacaaatt ctcaagcatt
    11161 caatcagttg caatgcctgc tgtaggcctg ataagcgaag cgcatcaggc aataatacgt
    11221 ttgtcaccca gcctctggat cacatcagtt cgggcactta taaacctgac cgataatctg
    11281 gctatccgtc gggacaaaac tggacaacat tccctgcgac gggctgctga tgccataaat
    11341 cacgttaccg cccattgcag ccgcctggtt gcgcagatcg tttgctgcgc cgcgcataga
    11401 accgccctct tctccgtgtt gcccggaaag ccagttgctt tgcttacctg tcgcagtacc
    11461 aatcagctgg cactctgcgc ctggctgctc gtccacaatg cgtacactct gaccggcagc
    11521 actcaattcg ttgctggagc tacaacccgc catcagtagc gcggcaccga caatccctgc
    11581 taagtatttt acgtgcatgt tattccccat aatcaatgag ctggacgcca ctcgcgtcgt
    11641 ccgtgtctga atcttatact agaaagatga ccaaaagaaa aacccccaga catttctgcc
    11701 cgggggtttg tttatttctg cgaggtgcag ggcaattaca tcatgccgcc catgccaccc
    11761 atgccgccca taccgccagc agcgcctaag tcagctgcat cgtttttcgg caggtcggta
    11821 accatgcact cggtggtgat catcaggcca gccacagaag ccgcgtactg cagagcagaa
    11881 cgggttactt tggttggatc caagataccc atgtcgatca tgttgccgta ttcttcggtt
    11941 gctgcgttgt aaccgtagtt gccgtcgccg cctttaacag tgttagcaac aacagacggt
    12001 tcttcgccgc agttcaatac gatctgacgc agcggagctt ccattgcacg cagtgcaact
    12061 ttgataccca cgttctggtc ttcgttctga ccacgcaggt cagccagttt agacgctacg
    12121 cggatcagcg caacaccacc accagcaacc acgccttctt ctaccgcagc acgggtcgcg
    12181 tgcagggcat cttcaacgcg tgcttttttc tctttcattt caacttcggt agcagcacct
    12241 actttgataa ctgcaacgcc gcctgccagt ttcgctacgc gctcctgcag tttttcacgg
    12301 tcgtagtcag aagttgcttc ttcaatctgc tgacggatct gagcaacacg gccctggatt
    12361 gcagcttctt cacccacgcc atcaatgatg gtggtggtgt ctttgttgat cacaacacgt
    12421 ttagcctgac ccaggtcttc cagggttgct ttttccagct ccataccgat ctcttcagag
    12481 attacggtac cgccagtcag ggttgcgata tcctgcagca tagctttacg gcgatcgccg
    12541 aagcccggag ctttaaccgc agcaactttc acgatgccac gcatggtgtt aacaaccaga
    12601 gttgccagcg cttcgccttc aacatcttca gcgatgatca gcagcggttt acctgcttta
    12661 gcaacggctt ccagaaccgg cagcatttcg cggatgttgg agattttctt gtcagccagc
    12721 aggatgaacg ggctttccag ttctactgcg ccagtttccg gcttgttgat gaagtaagga
    12781 gacaggtagc cacggtcgaa ctgcatacct tcaaccacgt ccagttcgtc ctgcagaccg
    12841 gtaccgtctt caacggtgat aacgccttct ttaccgactt tgtccatcgc ttcagcgatc
    12901 agtttaccta cggtttcgtc ggagttagcg gagatggtac caacctgagc aatcgcttta
    12961 gagtcagagc atggtacgga cagcgctttc agttcttcaa ctgcagcggt aacagctttg
    13021 tcgataccac gtttcaggtc catcgggttc atgcccgcag caactgcttt cagaccctca
    13081 gtgatgatag cctgagccag tacggttgca gtggtggtac cgtcgcctgc agcgtcgttc
    13141 gctttagagg caacttcttt caccatctgc gcacccatat tttcgaactt gtcttccagt
    13201 tcgatttcac gagcaacgga aacaccatct ttggtgatgg tcggtgcacc gaaagattta
    13261 tccagaacta cgttacggcc tttcggaccg agggtaactt tcactgcatc tgccagtacg
    13321 tttacgccgc gcagcatttt cacacgagcg tcgttaccga attttacgtc tttagctgcc
    13381 attatcttta ttccttaaat tcgtatgttc agtgtcgtgc gaggattacg cttcaacaat
    13441 tgccagaatg tcgctttcgg acatgatcaa cacttcttca ttgtcgatct tctcagattt
    13501 cacaccgtag ccatcgttga aaataacgat gtcgccaact ttcacatcca gcggcttcac
    13561 ttcgccattt tcaaggatac ggccattgcc gacagccagc acttcgccgc gggtggattt
    13621 agccgctgca gagccggtca gaacgatgcc gccagcagat ttagtttcaa cttctttacg
    13681 cttgacgatc acgcgatcat gcaatggacg aatattcatt gataactctc ctttgagaaa
    13741 gtccgtatct gttatgggtg acgccggagc ttacgtggtt tcccggctgg tgaccagaga
    13801 aatggggatg aggattcgcc ccttcaaggg ggaaaaagaa aaaaaattct gatcagcaca
    13861 aaatcgggtg aaaaccctga ttcacctcac atttcatcgc aatttcttca tcgccgtcat
    13921 aagcgaatct gattgtgcta ccatcgaaaa tctacgcagt tgcccaaaat ttgggcgcaa
    13981 tcggatatca acccatgagt ggactcaaac aagaactggg gctggcccag ggcattggcc
    14041 tgctatcgac gtcattatta ggcaccggcg tgtttgccgt tcctgcgtta gctgcacagg
    14101 tagcaggcaa taacagcctg tgggcgtggc ccgttttgat tatcttagtg ttcccgattg
    14161 cgattgtgtt tgcgattctg ggtcgccact atccctgcgc aggcggtgtc gcgcacttcg
    14221 tcggtatggc gtttggttcg cggcttgagc gagtcaccgg ctggttgttt ttatcggtca
    14281 ttcccgtggg tttgccagcc gcgctacaaa ttgccgccgg gttcggccag gcaatgtttg
    14341 gctggcatag ctggcaactg ttgttggcag aactcggtac gctggcgctg gtgtggtata
    14401 tcggtactcg cagtgccagt tccagtgcta atctacaaac cgttattgcc ggacttatcg
    14461 tcgcgctgat tgtcgctatc tggtgggcgg gcgatatcaa acctgcgaat atccccttcc
    14521 cggcacctgg taatatcgaa cttaccgggt tatttgctgc gttatcagtg atgttctggt
    14581 gttttgtcgg tctggaagca tttgcccatc ttgcctcgga atttaaaaat ccagagcgtg
    14641 attttcctcg cgcattgatg attggtctgc tgctggcagg attagtctac tggggctgta
    14701 cggtagtcgt cttacacttc gacgcctatg gtgaaaaaat ggcggcggca gcatcgcttc
    14761 caaaaattgt agtgcaactg ttcggtgtag gagcgttatg gattgcctgc gtgattggct
    14821 atctggcctg ctttgccagt ctcaacattt atatacagag cttcgcccgc ctggtctggt
    14881 cgcaggcgca acataatcct gaccactacc tggcacgcct ctcttctcgc catatcccga
    14941 ataatgccct caatgcggtg ctcggctgct gtgtggtgag cactttggtg attcatgctt
    15001 tagagatcag tctggacgct cttattattt atgccaatgg catctttatt atgatttatc
    15061 tgttatgcat gctggcaggc tgtaaattat tgcaaggacg ttatcgacta ctggcggtgg
    15121 ttggcgggct gttatgcgtt ctgttactgg caatggtcgg ctggaaaagt ctctatgcgc
    15181 tgatcgtgct ggcggggtta tggctgttgc tgccaaaacg aaaaacgccg gaaaatggca
    15241 taatcacata atccggcgtt tcgacattaa tcctggcgat cgtctttatg atcaaggcgg
    15301 tcgcgctcat catcctttcg ctggtactca ccatcaaaag tattaccgcc accggtcccg
    15361 gcgctaaaac cgccgcctgg catacgagaa aagcgcaaat gcggcatcaa cttcactgtc
    15421 agatgctttt gcaccggcgg taataaaagc agaagaccga ggaagtcggt gaaaaagccc
    15481 ggtaataaaa gcagcaaacc ggcaatgatc agcgaaacac ttttaatcat ctccgccgct
    15541 gggttttcac ccgccgccat tttttgctgc atcagcacga aattcttaaa gccctggtta
    15601 cgtaccagtg acatcccgat aactgacgtg aatataacca gcacgagggt cagcaatacc
    15661 cccaatacat gggcaacctg aataaagatt gaaatctcaa tatagacata aaggaaaatg
    15721 gcaataaaag gtaaccagcg caaaggtttc tcctgtaata gcagccggta aaacccggct
    15781 acctgaatgg gttgcgaatc gcgttcagct tatattgtgg tcattagcaa aatttcaaga
    15841 tgtttgcgca actatttttg gtagtaatcc caaagcggtg atctatttca caaattaata
    15901 attaaggggt aaaaaccgac acttaaagtg atccagatta cggtagaaat cctcaagcag
    15961 catatgatct cgggtattcg gtcgatgcag gggataatcg tcggtcgaaa aacattcgaa
    16021 accacatata ttctgtgtgt ttaaagcaaa tcattggcag cttgaaaaag aaggttcaca
    16081 tgtcaaacaa cattcgtatc gaagaagatc tgttgggtac cagggaagtt ccagctgatg
    16141 cctactatgg tgttcacact ctgagagcga ttgaaaactt ctatatcagc aacaacaaaa
    16201 tcagtgatat tcctgaattt gttcgcggta tggtaatggt taaaaaagcc gcagctatgg
    16261 caaacaaaga gctgcaaacc attcctaaaa gtgtagcgaa tgccatcatt gccgcatgtg
    16321 atgaagtcct gaacaacgga aaatgcatgg atcagttccc ggtagacgtc taccagggcg
    16381 gcgcaggtac ttccgtaaac atgaacacca acgaagtgct ggccaatatc ggtctggaac
    16441 tgatgggtca ccagaaaggt gaatatcagt acctgaaccc gaacgaccat gttaacaaat
    16501 gtcagtccac taacgacgcc tacccgaccg gtttccgtat cgcagtttac tcttccctga
    16561 ttaagctggt agatgcgatt aaccaactgc gtgaaggctt tgaacgtaaa gctgtcgaat
    16621 tccaggacat cctgaaaatg ggtcgtaccc agctgcagga cgcagtaccg atgaccctcg
    16681 gtcaggaatt ccgcgctttc agcatcctgc tgaaagaaga agtgaaaaat atccaacgta
    16741 ccgctgaact gctgctggaa gttaaccttg gcgcaacagc aatcggtact ggtctgaaca
    16801 cgccgaaaga gtactctccg ctggcagtga aaaaactggc tgaagtcact ggcttcccat
    16861 gcgtaccggc tgaagacctg atcgaagcga cctctgactg cggcgcttat gttatggttc
    16921 acggcgcgct gaaacgcctg gctgtgaaga tgtccaaaat ctgtaacgac ctgcgcttgc
    16981 tctcttctgg cccacgtgcc ggcctgaacg agatcaacct gccggaactg caggcgggct
    17041 cttccatcat gccagctaaa gtaaacccgg ttgttccgga agtggttaac caggtatgct
    17101 tcaaagtcat cggtaacgac accactgtta ccatggcagc agaagcaggt cagctgcagt
    17161 tgaacgttat ggagccggtc attggccagg ccatgttcga atccgttcac attctgacca
    17221 acgcttgcta caacctgctg gaaaaatgca ttaacggcat cactgctaac aaagaagtgt
    17281 gcgaaggtta cgtttacaac tctatcggta tcgttactta cctgaacccg ttcatcggtc
    17341 accacaacgg tgacatcgtg ggtaaaatct gtgccgaaac cggtaagagt gtacgtgaag
    17401 tcgttctgga acgcggtctg ttgactgaag cggaacttga cgatattttc tccgtacaga
    17461 atctgatgca cccggcttac aaagcaaaac gctatactga tgaaagcgaa cagtaatcgt
    17521 acagggtagt acaaataaag aaggcacgtc agatgacgtg ccttttttct tgtgaacagt
    17581 aacttaaaaa caacaaccta atatcaactt gttaaaaaac aaggaaggct aatatgctag
    17641 ttgtagaact catcatagtt ttgctggcga tcttcttggg cgccagattg gggggaatag
    17701 gtattggttt tgcaggcgga ttgggggtgc tggttcttgc cgctattggc gttaaacccg
    17761 gtaacatccc gttcgatgtc atttccatta tcatggcggt tatcgccgct atttctgcca
    17821 tgcaggttgc tggcggtctg gactatctgg ttcatcagac agaaaagctg ctgcgccgta
    17881 acccgaaata catcacgatc ctcgcaccta tcgtgaccta tttcctgaca atctttgctg
    17941 gtactggcaa catctctctg gcgacactgc cagttatcgc tgaagttgcg aaggaacaag
    18001 gcgttaaacc ttgccgtccg ctctctactg cagtggtatc cgcgcagatt gcgatcaccg
    18061 catcgccaat ctcagcggca gtggtttaca tgtcttccgt gatggaaggt catggcatca
    18121 gctacctcca tctgctctcc gtggtcatcc cgtccaccct gctggcggtt ctggtgatgt
    18181 cctttctggt cactatgctg ttcaactcca aactctctga cgatccgatt tatcgcaagc
    18241 gtctggaaga gggcctggtt gaactgcgcg gtgaaaagca gattgaaatc aaatccggtg
    18301 caaaaacgtc cgtctggctg ttcctgctgg gcgtagttgg cgtggttatc tatgcaatca
    18361 tcaacagccc aagcatgggt ctggttgaaa aaccgctgat gaacaccacc aacgcaatcc
    18421 tgatcatcat gctcagcgtt gcaactctga ccaccgttat ctgtaaagtc gataccgaca
    18481 acatcctcaa ctccagcacc ttcaaagcag gtatgagcgc ctgtatttgt atcctgggtg
    18541 ttgcgtggct gggcgatact ttcgtttcca acaacatcga ctggatcaaa gataccgctg
    18601 gtgaagtgat tcagggtcat ccgtggctgc tggccgtcat cttcttcttt gcttctgctc
    18661 tgctgtactc tcaggctgca accgcaaaag cactgatgcc gatggctctg gcactgaacg
    18721 tttcaccgct gaccgctgtt gcttctttcg ctgcggtgtc tggtctgttc attctgccga
    18781 cctacccgac gctggttgct gcggtacaga tggatgacac gggtactacc cgtatcggta
    18841 aattcgtctt caaccatccg ttcttcatcc cgggtactct gggtgttgcc ctggccgttt
    18901 gcttcggctt cgtgctgggt agcttcatgc tgtaatgatc aatcgcgggg cgttcacgcc
    18961 ccgctttctt tcccgccgac taacatcctt cccccgtacg ttgtatagtg acctctctct
    19021 tgcggttcca tctgttcttg cgaggtgttt atgcttgatg aaaaaagttc gaataccgcg
    19081 tctgtcgtgg tgctatgtac ggcaccagat gaagcgacag cccaggattt agctgccaaa
    19141 gtgctggcgg aaaaactggc ggcctgcgcg accttgatcc ccggcgctac ctctctctat
    19201 tactgggaag gtaagctgga gcaagaatac gaagtgcaga tgattttaaa aactaccgta
    19261 tctcaccagc aggcactgct ggaatgcctg aagtctcatc atccatatca aaccccggaa
    19321 cttctggttt tacctgttac acacggagac acagattacc tctcatggct caacgcatct
    19381 ttacgctgat cctgctactt tgcagcactt ccgtttttgc cggattattc gacgcgccgg
    19441 gacgttcaca atttgtcccc gcggatcaag cctttacttt tgattttcag caaaaccaac
    19501 atgaccttaa tctgacctgg cagatcaaag acggttacta cctctaccgt aaacagatcc
    19561 gcattacgcc ggaacacgcg aaaattgccg acgtgcagct gccgcaaggc gtctggcatg
    19621 aagatgagtt ttacggcaaa agcgagattt accgcgatcg gctgacgctt cccgtaacca
    19681 tcaaccaggc gagtgcggga gcgacgttaa ctgtcaccta ccagggctgt gctgatgccg
    19741 gtttctgtta tccgccagaa accaaaaccg ttccgttaag cgaagtggtc gccaacaacg
    19801 cagcgtcaca gcctgtgtct gtttcgcagc aagagcagca caccgcgcaa ttgccctttt
    19861 ccgcgctctg ggcgttgttg atcggtattg gtatcgcctt tacgccatgc gtgctgccaa
    19921 tgtacccact gatttctggc atcgtgctgg gtggtaaaca gcggctctcc actgccagag
    19981 cattgttgct gacctttatt tatgtgcagg ggatggcact gacttacacg gcgctgggtc
    20041 tggtagttgc cgccgcaggg ttacagttcc aggcggcgct acagcaccca tacgtgctca
    20101 ttggcctcgc catcgtcttt accttgctgg cgatgtcaat gtttggcttg tttactctac
    20161 aactcccctc ttcgctgcaa acacgtctca cgttgatgag caatcgccaa cagggcggct
    20221 cacctggcgg tgtgtttgtt atgggggcga ttgccggact tatctgttca ccatgcacca
    20281 ccgcaccgct tagcgcgatt ctgctgtata tcgcccaaag cgggaacatg tggctgggcg
    20341 gcggcacgct ttatctctat gcgttgggca tgggcctgcc gctgatgcta attaccgtct
    20401 ttggtaaccg cttgctgccg aaaagcggcc cgtggatgga acaagtcaaa accgcgtttg
    20461 gttttgtgat cctcgcactg ccggtcttcc tgctggagcg agtgattggt gatgtatggg
    20521 gattacgctt gtggtcggcg ctgggtgtcg cattctttgg ctgggccttt atcaccagcc
    20581 tacaggctaa acgcggttgg atgcgcgtgg tgcaaataat cctgctggca gcggcattgg
    20641 ttagcgtgcg cccacttcag gattgggcat ttggtgcgac gcataccgcg caaactcaga
    20701 cgcatctcaa ctttacacaa atcaaaacgg tagatgagtt aaatcatgcg ctcgttgaag
    20761 ccaaaggcaa accggtgatg ttagatcttt atgccgactg gtgcgtcgcc tgtaaagagt
    20821 ttgagaaata caccttcagc gacccgcagg tgcaaaaagc gttagcagac acggtcttac
    20881 ttcaggccaa catcacggcc aacgacgcac aagatgtggc gctgttaaag catcttaatg
    20941 tccttggcct accgacaatt ctcttttttg acggacaagg ccaggagcat ccacaagcac
    21001 gcgtcacggg ctttatggat gctgaaacct tcagcgcaca tttgcgcgat cgccaaccgt
    21061 gaacgacact tgcagcggga aagacggagg aaaatagcgt gcaacgtgaa gatgtactgg
    21121 gagaagccct gaaattatta gaattacaag ggattgccaa caccacgctg gagatggttg
    21181 ctgaacgtgt ggattatcca ctggacgagc tacgccgctt ctggccagac aaagaggcaa
    21241 tcctctacga tgcgctgcgt tatcttagcc aacagataga tgtctggcgt cgtcagctga
    21301 tgctggacga aacgcaaacc gccgaacaaa agcagctggc acgttatcag gcgttatcgg
    21361 agtgcgttaa aaacaaccgc tatccgggct gtctatttat cgctgcctgt acgttttatc
    21421 ccgatcctgg ccaccctatt catcaactgg ccgatcagca aaaaagcgcg gcctacgatt
    21481 tcacccacga actgttaacc acactggaag ttgacgatcc ggcgatggta gcaaagcaga
    21541 tggaactggt gctggaaggc tgtttaagcc gaatgctggt gaatcgtagc caggcggatg
    21601 tcgacactgc acatcggctg gcggaagata tcctgcgctt cgcccgctgc cgccagggtg
    21661 gtgcattgac ctgacagaaa cacagaaaag aagcgatttg ccgcaatctt aagcagttga
    21721 atcgctttta ctgaaattag gttgacgaga tgtgcagatt acggtttaat gcgccccgtt
    21781 gcccggatag ctcagtcggt agagcagggg attgaaaatc cccgtgtcct tggttcgatt
    21841 ccgagtccgg gcaccaaatt catatcaacg gacctctacg gaggttcgtt tttcgtttca
    21901 gaacgccacg atttaagcgt tctgcctaca aatcaattct accgaactca accagattcc
    21961 ccccacatca accccattgt gtgggtataa ttgcgggcat accccagttc gacagaattt
    22021 gtaccctctt taacgcattc agaaggctga actatggcac tgactgacgc aaaaatccgg
    22081 gctgcaaagc ccactgacaa ggcttataaa ctcactgacg ggactggcat gttcctgctg
    22141 gtacatccta atggctcccg ttactggcgt ctccgttatc gtattctggg taaggagaag
    22201 actctggcac ttggtgtgta tccagaagtt tctctctccg aagctcgtac aaaacgggat
    22261 gaggcccgaa aactgatttc ggagggggtt gacccttgcg aacagaaaag agctaaaaaa
    22321 gtagtccctg atttacagct ctcttttgaa catattgcgc gacgctggca tgccagtaat
    22381 aaacaatggg cacaatcaca cagcgataaa gtactcaaaa gcctcgagac tcacgttttc
    22441 ccctttatcg gcaaccggga tatcacaaca ctcaataccc cggatctgct tatccctgtt
    22501 cgtgctgcag aagctaaaca aatttatgaa atcgccagtc gtctgcagca aagaatatct
    22561 gccgtaatgc gttatgccgt acagtctggc atcatcagat ataatcctgc tctggatatg
    22621 gctggcgcat tgactacggt aaaacgccag catcgccccg ctcttgatct ttctcgcctg
    22681 cctgaacttt tgtcgcgtat tggcagttac aaagggcaaa ctgtcaccca gcttgccgtt
    22741 atgctgaatt tactggtttt tattcgttcc agtgaactca gatacgcccg ctggtctgaa
    22801 attgatattg acaatgccat gtggactatt ccagccgaac gcgaacccct gccaggcgta
    22861 aaattctcac accggggctc caagatgcga acaccacatc ttgtgccact cagcaaacag
    22921 gctgtagcca tactgacaga actacagaca tgggctggtg aaaatggtct gatctttacg
    22981 ggagcacatg acccgcgtaa accaatcagt gaaaatgtaa tgaacgcatc
//
LOCUS       DAJVUP010000055        22921 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.055, whole genome shotgun sequence.
ACCESSION   DAJVUP010000055 DAJVUP010000000
VERSION     DAJVUP010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.055"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..745)
                     /gene="fsr"
                     /locus_tag="OQQ75_001952"
     CDS             complement(<1..745)
                     /gene="fsr"
                     /locus_tag="OQQ75_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS1976298.1"
                     /translation="MAMSEQTQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI
                     LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS
                     GLVLLALAGSVGAVLLAAALVGTSSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG
                     SSLGPLLTAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIIN
                     PLPRNKVVLAVSILLILIFSKYFYMASISS"
     gene            963..2615
                     /gene="ushA"
                     /locus_tag="OQQ75_001953"
     CDS             963..2615
                     /gene="ushA"
                     /locus_tag="OQQ75_001953"
                     /EC_number="3.1.3.5"
                     /EC_number="3.6.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HCS1976299.1"
                     /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG
                     HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR
                     GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR
                     QDLKIAVIGLTTDDTAKIGNPEYFTDVEFRKPADEAKLVIQELQQTEKPDIIIAATHM
                     GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQAPVCMAAENKKQVDYVPGTPCK
                     PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL
                     YTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAA
                     QMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV
                     AQMKPDSGAYPQFANVSFVTKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR
                     LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ"
     gene            complement(2652..3131)
                     /gene="ybaK"
                     /locus_tag="OQQ75_001954"
     CDS             complement(2652..3131)
                     /gene="ybaK"
                     /locus_tag="OQQ75_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK"
                     /protein_id="HCS1976300.1"
                     /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV
                     YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMAAQRSTGYLVGG
                     ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD"
     gene            complement(3335..4129)
                     /locus_tag="OQQ75_001955"
     CDS             complement(3335..4129)
                     /locus_tag="OQQ75_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HCS1976301.1"
                     /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGS
                     HDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHIS
                     QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
                     AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ
                     SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR"
     gene            4267..4608
                     /locus_tag="OQQ75_001956"
     CDS             4267..4608
                     /locus_tag="OQQ75_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS1976302.1"
                     /translation="MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSTL
                     INNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYL
                     ARREERAKKVA"
     gene            complement(4823..7327)
                     /gene="copA"
                     /locus_tag="OQQ75_001957"
     CDS             complement(4823..7327)
                     /gene="copA"
                     /locus_tag="OQQ75_001957"
                     /EC_number="7.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-exporting P-type ATPase CopA"
                     /protein_id="HCS1976303.1"
                     /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT
                     GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ
                     LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG
                     AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSL
                     WLVIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW
                     FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTAEGEK
                     SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGESVHAGT
                     VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALI
                     SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA
                     DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR
                     AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNPALLNDQQVDTKAIEADISA
                     QASQGATPVLLAIDGKVVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA
                     IAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG
                     SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWP
                     FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE"
     gene            7589..8521
                     /gene="glsA"
                     /locus_tag="OQQ75_001958"
     CDS             7589..8521
                     /gene="glsA"
                     /locus_tag="OQQ75_001958"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HCS1976304.1"
                     /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAVVA
                     IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI
                     ALELHGGKPLSPLVNAGAIATTSLINAENIEQRWQRILHIQQQLAGEQVALSDEVNQS
                     EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLINTVELATLGATLAAGGLN
                     PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI
                     AAFSPPLDEEGNSVRGQKMVASVAKQLGYNVFKG"
     gene            8524..9816
                     /locus_tag="OQQ75_001959"
     CDS             8524..9816
                     /locus_tag="OQQ75_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1976305.1"
                     /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA
                     STWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL
                     AVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
                     VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK
                     VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHV
                     GYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV
                     LIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI
                     VGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV"
     gene            9941..10348
                     /gene="cueR"
                     /locus_tag="OQQ75_001960"
     CDS             9941..10348
                     /gene="cueR"
                     /locus_tag="OQQ75_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HCS1976306.1"
                     /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL
                     NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR
                     DQLLALANACPGDDSADCPIIENLSGCCHHRAG"
     gene            complement(10349..10807)
                     /locus_tag="OQQ75_001961"
     CDS             complement(10349..10807)
                     /locus_tag="OQQ75_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HCS1976307.1"
                     /translation="MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL
                     VVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFV
                     LESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS"
     gene            complement(10804..11721)
                     /locus_tag="OQQ75_001962"
     CDS             complement(10804..11721)
                     /locus_tag="OQQ75_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HCS1976308.1"
                     /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG
                     LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS
                     NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
                     DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA
                     FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVM
                     MPLEASSLMGSIAGIAELVKDSANKRTQP"
     gene            11867..12544
                     /gene="fetA"
                     /locus_tag="OQQ75_001963"
     CDS             11867..12544
                     /gene="fetA"
                     /locus_tag="OQQ75_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter ATP-binding protein FetA"
                     /protein_id="HCS1976309.1"
                     /translation="MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGC
                     GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI
                     FPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL
                     LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ
                     EARYELA"
     gene            12531..13310
                     /gene="fetB"
                     /locus_tag="OQQ75_001964"
     CDS             12531..13310
                     /gene="fetB"
                     /locus_tag="OQQ75_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308581.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HCS1976310.1"
                     /translation="MNSHNITNESLALALMLVVVAILISHKEKLALEKDIFWSVGRAI
                     IQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVG
                     AGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
                     SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ
                     IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK"
     gene            complement(13373..14227)
                     /gene="cnoX"
                     /locus_tag="OQQ75_001965"
     CDS             complement(13373..14227)
                     /gene="cnoX"
                     /locus_tag="OQQ75_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperedoxin"
                     /protein_id="HCS1976311.1"
                     /translation="MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPI
                     LESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI
                     RALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIA
                     LNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAAL
                     ATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYR
                     RQLYALLY"
     gene            complement(14288..15097)
                     /gene="ybbO"
                     /locus_tag="OQQ75_001966"
     CDS             complement(14288..15097)
                     /gene="ybbO"
                     /locus_tag="OQQ75_001966"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS1976312.1"
                     /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA
                     GCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGP
                     LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA
                     ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF
                     TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG"
     gene            complement(15087..15710)
                     /gene="tesA"
                     /locus_tag="OQQ75_001967"
     CDS             complement(15087..15710)
                     /gene="tesA"
                     /locus_tag="OQQ75_001967"
                     /EC_number="3.1.1.5"
                     /EC_number="3.1.2.14"
                     /EC_number="3.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional acyl-CoA thioesterase I/protease
                     I/lysophospholipase L1"
                     /protein_id="HCS1976313.1"
                     /translation="MNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSA
                     SAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLR
                     GFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP
                     LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS"
     gene            15681..16367
                     /locus_tag="OQQ75_001968"
     CDS             15681..16367
                     /locus_tag="OQQ75_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1976314.1"
                     /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE
                     SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT
                     LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
                     FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR
                     LVNGQLQEEA"
     gene            16364..18775
                     /locus_tag="OQQ75_001969"
                     /pseudo
     CDS             16364..18775
                     /locus_tag="OQQ75_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415029.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            19204..22921
                     /locus_tag="OQQ75_001970"
                     /pseudo
     CDS             19204..22921
                     /locus_tag="OQQ75_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415030.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT         5280 a         6004 c         6484 g         5153 t
ORIGIN      
        1 agctgctgat gctcgccata tagaaatatt tcgagaaaat gaggattaac agaatgctga
       61 ctgccagtac cactttgttg cgcggcagtg gattgattat cgtcgctttg ggttttcctt
      121 tattcattcg gtgctgtgcc gagtaccaac ggctaatttg cgccaacacc acgatcgcca
      181 gcagtgccgc aagcacaaac caggcaacgt tgcctttgcc ataaggcgcg ataatcaccg
      241 ccgtcagcaa gggtcccagg gaactgccaa agttgccgcc gacctgaaag atagattgcg
      301 ccaggccatg ccgcccgccg gaagccatac gggctacgcg agaagattcc ggatgaaaga
      361 ccgatgaact ggtaccgacc agcgccgccg ccagcagaac tgcgccaaca ctgcccgcca
      421 gcgcaagcag caccagacca cttaaggtaa agcacatgcc aattggcaac gaccacggca
      481 tcggatattt atcggtccag tagccgacca ctggttgcag tagcgaagag gcgagctgga
      541 aggtgagggt tatcatgcca atctgcataa atgtcagaga aaattctgac tgaagcagag
      601 gataaatcgc cagaatcagc gattggatca tgtcgttcag cagatgtgag aggctgatag
      661 cacctaaaat accaaacgat gttcgggcct tggtcgttga cgcagccgcg cccgccacag
      721 gctgggtttg ttcactcatt gccataggaa agtcactttt tcagggttgc gatgtaaaga
      781 atgatcttat ttgtgattat tacccgacta acatacctgt aagcgtcgcc tgaaggaagt
      841 ctcaacgccg aatacagaat ttctaatctg gatgcagatt tatcttcacc ggacgcagac
      901 ttgtctatta tgttgcgtca tactattttt caacacgttg aaatcaggtc agggagagaa
      961 gtatgaaatt attgcagcgg ggcgtggcgt tagcgctgtt aaccacattt acactggcga
     1021 gtgaaactgc tctggcgtat gagcaggata aaacctacaa aattacagtt ctgcatacca
     1081 atgatcatca tgggcatttt tggcgcaatg aatatggcga atatggtctg gcggcgcaaa
     1141 aaacgctggt ggatggtatc cgcaaagagg ttgcggctga aggcggtagc gtgctgctac
     1201 tttccggtgg cgacattaac actggcgtgc ccgagtctga cttacaggat gccgaacctg
     1261 attttcgcgg tatgaatctg gtgggctatg acgcgatggc gatcggtaat catgaatttg
     1321 ataatccgct caccgtatta cgccagcagg aaaagtgggc caagttcccg ttgctttccg
     1381 cgaatatcta ccagaaaagt accggcgagc gcctgtttaa accatgggcg ctgtttaagc
     1441 gtcaggatct gaaaattgcc gtcattgggc tgacaaccga tgacacagca aaaattggta
     1501 acccggaata cttcactgat gtcgaatttc gtaagcccgc cgatgaagcg aagctggtga
     1561 ttcaggagct gcaacagaca gaaaagccag acattattat cgcggcgacc catatggggc
     1621 attacgataa tggtgagcac ggctctaacg caccgggcga tgtggagatg gcacgcgcgc
     1681 tgcctgccgg atcgctggcg atgatcgtcg gtggtcactc gcaagctccg gtctgcatgg
     1741 cggcagaaaa caaaaaacag gtcgattacg tgccgggtac gccatgcaaa ccagatcaac
     1801 aaaacggcat ctggattgtg caggcgcatg agtggggcaa atacgtggga cgggctgatt
     1861 ttgagtttcg taatggcgaa atgaaaatgg ttaactacca gctgattccg gtgaacctga
     1921 agaagaaagt gacctgggaa gacgggaaaa gcgagcgcgt gctttacact cctgaaatcg
     1981 ctgaaaacca gcaaatgatc tcgctgttat cgccgttcca gaacaaaggc aaagcgcagt
     2041 tggaagtgaa aataggcgaa accaatggtc gtctggaagg cgatcgtgac aaagtgcgtt
     2101 ttgtacagac caatatgggg cggttgattc tggcagccca aatggatcgc actggtgccg
     2161 actttgcggt gatgagtgga ggaggaattc gtgattctat cgaagcaggc gatatcagct
     2221 ataaaaacgt actgaaagtg cagccattcg gcaatgtggt ggtgtatgcc gacatgaccg
     2281 gtaaagaggt gattgattac ctgaccgccg tcgcacaaat gaagccagat tcaggtgcct
     2341 acccgcaatt tgccaacgtt agctttgtga cgaaagacgg caaactcaac gacctgaaaa
     2401 tcaaaggcga accggtcgat ccggcgaaaa cttaccgtat ggcgacatta aacttcaatg
     2461 ccaccggcgg tgatggctat ccgcgccttg ataacaaacc gggctatgtg aataccggct
     2521 ttattgatgc cgaagtgctg aaagcgtata tccagaaaag ctcgccgctg gatgtgagtg
     2581 tttatgaacc gaaaggtgag gtgagctggc agtaatccga aagtgccgga tatttgcatc
     2641 cggcacaatg cttaatcgcg gcgggcgata tcagcaaatt tggcatcgag gatcttcgcc
     2701 agatcgcctg ccgccagttc gatatccagt ccgcgcttgc cgccagaaac ataaatagtg
     2761 gcaaattctt gtgcgggggc gtcgataatc gtcggcagac gttttttctg ccccagtggg
     2821 ctaatccccc caaccaggta tcccgtcgaa cgctgcgcgg ccatcggatc ggccatctca
     2881 actttcttgg cacccagcgc ttttgctact tttttaagat ccagttgacc tgcgaccggc
     2941 gtaacggcca ctgccagatg tttcatatca ccgttcactg ccaccagtag cgttttgtag
     3001 acttgatccg gattcaaacc taattttttg acgacttcat cgccaaaatt ggtttcagcc
     3061 ggatcgtgct cgtaggtatg gatttgaaac gaaatcttgt ttttttcgag taatttaact
     3121 gcgggtgtca tggtaatttt cctgccttaa acaaaaaaac gaagcaagca tacgcctgat
     3181 ggcggtccaa aaaaaagagt catcttgcct aagagtattg gcaggatggt gagattgagc
     3241 gacaatcgag ttacaccgtc gcttaaagtg acggcataat aataaaaaaa tgaaattcct
     3301 ctttgacggg ccaatagcga tattggccat ttttttagcg caacatttgc ggcaaattcc
     3361 cttctccata caggtgtagt gcaccgaccg cgaccacata tcgccccggc ggcatggcgc
     3421 gtaatttatc ccgccaggcg agatttcgct gatgcatcag cacatcgtac agcgactgac
     3481 tgaacgtatt gggcagcgtt atatcattat tttgcggagg tgcattcagc caccagctca
     3541 tcatttgttg cagcaaccgt gcgttggtat gccagtgggt cagcgtatcg tccagcagcg
     3601 ccagtccttt gtcagggagc tggagcaaca tggtaatctg gttttcagcc ccttccagtt
     3661 caatcacggg tttatgttgt tgcttcgccg cctgcaataa ctggtaatcg ataccgtatt
     3721 ctgcccgcag ccccagtttt tgtgcctgcg tcgcctgaag aaccatcgcg atttgccaca
     3781 gcggttgagt agaaaagagc gacggagaaa tgcccatctc ctggctaatg tgctgcagat
     3841 tttggagttg ctcctcgtta atgcgctctt ccagcgcctc gcaagtaggc aaattagcaa
     3901 aaggcgtatc gctggtggaa acatccgcct cgacgatcag cgcatcggcg tttttgagct
     3961 ttttgagcaa acgggtgggc aggggagtca tatcgtggct acccatatga atactgccaa
     4021 tcagatgaaa atggcgattg ccgggaaggg tgatatcgat ggcaggccag gtgtaatgat
     4081 taccgcgcag cgcggcccaa agcgttttta cccggtacaa cagatccata cgacctccct
     4141 ttgtgaaata tcatgctagc gcgcggtgag ggatggcgca aatggagttg gggacttgtt
     4201 taatgtgttt gtatgattca gtatgttctt gcatcgctat tcacagggaa gcaacagtta
     4261 aaaaccatga aacaggcaac aagaaaaccg acgacacccg gagatattct tctctatgaa
     4321 tatctggaac cgctcgattt gaaaatcaat gagttagcag agttgctgca tgttcatcgt
     4381 aatagcgtca gtacactgat caataataat cgtaaactca ccactgagat ggcattccgt
     4441 ctggcgaaag tttttgatac cacagtcgat ttttggctaa acctccaggc ggcagttgat
     4501 ctttgggaag ttgaaaacaa catgcgcacc caggaagaat tgggacggat tgaaacagtg
     4561 gctgaatatt tggcacgccg tgaagagcgt gcaaaaaagg tcgcgtaagg ccaaaacatc
     4621 gcttcatctc gtaggccgga taaggcgttc acgccgcatc cggcatccga gcaccattgc
     4681 ctgatgcgac gcttacccgt cttatcaggc ctacaaacct gtgcctgaac cgtaggccgg
     4741 ataaggcgtt tacgccgcat ccggcagtca tgcgtcgatg ccaaatgcgc cgccctaaag
     4801 cagcgcatcc gcaatgacgt acttattcct tcggtttaaa ccgcagcaac cggttggcgt
     4861 tactcactac ggtaatcgac gagagcgcca ttgccgctcc ggcaactacc gggttaagca
     4921 gtgttccagt aaacggccac aaaataccag cggcgaccgg aataccaatg ctgttgtaga
     4981 taaacgcacc gagcaggttc tgcttcatat tgcgcagcgt tgcgcgggaa atcgcgagcg
     5041 catctgcaac acccatcagg ctatggcgca tcagggtaat cgccgcggtt tcaatggcaa
     5101 catcactgcc gccacccatc gcaataccga catccgcctg agccagcgct ggcgcgtcgt
     5161 taatgccgtc gcccaccatt gccacctgac gtccttcact ttgcagacgt ttgatcgctt
     5221 cggctttacc gtctggcagc accccggcga ttacctcatc aatccctgct tctttggcga
     5281 tcgcattggc ggtggttggg ttatccccgg tcaacatcac cagacgatat cccgctttat
     5341 gcaggcgttg cagcgccgcc acgctatcac tacgcaacgg atcgcgtaca gccagcaggg
     5401 ctactacttt cccgtcaatc gccagcagca caggcgttgc tccttgcgat gcctgagctg
     5461 aaatatcggc ttcaatcgct ttagtatcga cttgctggtc atttaacagc gccggattac
     5521 ccagcaataa cgcatgacct tcagcttcac cgcttacgcc cagcccgcgc aatgtgcgga
     5581 aaccgttgac ctgcggcagc tgcatatcgc ctgctttatc gaggatcgct cgtgccagcg
     5641 gatggctgga accttgctcc agcgccgccg ccagacgcaa tgcttgcgct tcatcaacat
     5701 cagcaaatgt ttttactgcg acaacctgcg gcttcccttc ggtcagcgtc ccggttttat
     5761 cgaacacgac ggtatcgagt gtactggcgc gttgcagcgc gtcggcgtcc cgcaccagca
     5821 cgccaaactc agccgcccgc ccgacgccgg aaataatcga cattggcgtc gccagcccca
     5881 gcgcacacgg acaggcaata atcagcaccg tggtggctat caccagggta tagacaatct
     5941 gcggtgccgg accaaagaaa taccagattg ctgcactgat cagcgcaatc accactacta
     6001 ccggcacaaa tacggctgag attttatccg ccagctgacc gatttctggc ttgctgctct
     6061 gggcctggcg caccatgcga ataatccttg acagcgtggt atggctgcca accgcactgg
     6121 cgcgaaatag cacgctaccg tcctgtacca ctgtcccggc atggacgctt tcgccttcgc
     6181 ctttttgctg cgggattggt tcgcccgtca gcatcgcttc atccagccat gcttcgccct
     6241 gggtaatctc gccatctacc ggcacgcgat cgccggtcgt caggcgcagt aacatccctg
     6301 gctgaacttc cgccagcggc acgctttttt caccctctgc ggtgaccact cgcgccgtcg
     6361 gtggggttaa atcgagtaat ttctccagcg ccttagaaga acgctgacgc gcgcgcgctt
     6421 ccagcatatg gccgagatta atcagaccga taatcatcgc actggcttca tagtaaagat
     6481 gccgcgcttc catcgggaac cactgcggcc acaggttgac gctcatcgaa tagagccacg
     6541 ccacacccgt acccagcgcc accagcgtat ccatcgtcgc cgcaccgttc agcaggcttt
     6601 tccacgcgct gcggtaaaaa tgcccgccgg cgaaaaccat taccgccagg gttatcaggc
     6661 cgataactaa ccacaggctg cggttgtcag cggtgaccat catgttatcg ccgatcatcc
     6721 cccagaccat taccggaata cccaccgcca gtgcgacaat cgcctgccag cggaagcgct
     6781 tcatcgtagc gacggcggtt tcctgctggc gctcgcggcg tttcgcgtca tcttcaatcg
     6841 cttccgcgcc gtagcccgct ttttccaccg cctgcactaa atcttgtggg gaggcactgc
     6901 ccatcaccag cgcagtacgc tccgccaggt ttacccgtgc ctgagtgacg cccggtacgc
     6961 tttgcagcgc attttgtacg cgggtgacac agctggcgca gctcatgccg ctcagcagca
     7021 actgctggct gtcatcgtca tcggcggtcg ctgccggaag cgcctcagaa accgctgtca
     7081 gtgcttccga cgggattgat gactccgcca gcggtttagc ctttgggtgg cttacagatg
     7141 cgtcataacc cgcttgtttg atggtttcga tcagctgttc tgcactggca gtcccggtaa
     7201 cgtgcgcttc agtgatagac acatccgctt gttccacatc cgggcgctgt tcgagacttt
     7261 ctttcacgcg tttaacgcag tgaccgcagg acaggccgtc cagggtcagg tcgatagttt
     7321 gtgacataaa acactccttt aagacagttt tgactggctg tgataaaggt taaaccttcc
     7381 agcaagggga aggtcaagaa attaataaac caggcgggta aaagtccgta aagattaaaa
     7441 aatcggctcg atttgcatca ggattagaca tttatttctt tgttttcctg tagttaagtt
     7501 gctggtgcta agttaaatca ggatgcctga aaatcggcac cggggtgagg aattacctcc
     7561 cgcatctata aaaaggagtt aacaaaagat gttagatgca aacaaattac agcaggcagt
     7621 ggatcaggct tacacccaat ttcactcact taacggcgga caaaatgccg attacattcc
     7681 ctttctggcg aatgtaccag gtcaactggc ggtagtggct atcgtgacct gcgatggcaa
     7741 cgtctatagt gcgggtgaca gtgattaccg ctttgcactg gaatccatct cgaaagtctg
     7801 tacgttagcc cttgcgttag aagatgtcgg cccgcaggcg gtacaggaca aaattggcgc
     7861 tgacccgacc ggattgccct ttaactcagt tatcgcctta gagttgcatg gcggcaaacc
     7921 gctttcgcca ctggtaaatg ctggcgctat tgccaccacc agcctgatta acgctgaaaa
     7981 tattgaacaa cgctggcagc gaattttaca tatccaacag caactggctg gtgagcaggt
     8041 agcgctctct gacgaagtca accagtcgga acaaacaacc aacttccata accgggccat
     8101 agcctggctg ctgtactccg ccggatatct ctattgtgat gcaatggaag cctgtgacgt
     8161 gtacacccgt cagtgctcca cgctcatcaa tactgttgaa ctggcaacgc ttggcgcgac
     8221 gctggcggcg ggtggtctga atccgctgac gcataaacgc gttcttcagg ccgacaacgt
     8281 gccgtacatt ctggccgaaa tgatgatgga agggctgtat ggtcgctccg gtgactgggc
     8341 gtatcgcgtt ggtttaccgg gcaaaagcgg tgtaggtggc ggtattctgg cggtcgtccc
     8401 tggcgtgatg ggaattgccg cgttctcacc accgctggac gaagaaggta acagtgttcg
     8461 cggtcaaaaa atggtggcat cggtcgctaa gcaactcggc tataacgtgt ttaagggctg
     8521 atcatgatga acacggaagg taataacggt aacaaacccc tcggtctatg gaatgtcgtt
     8581 tccatcggta ttggggcaat ggtgggggcg gggatcttcg cgctgctggg gcaggctgcg
     8641 ttgctaatgg aagcctcgac ctgggtcgcc tttgcttttg gcggtattgt ggcgatgttt
     8701 tccggttatg cctatgcgcg tctgggggcg agctatccca gcaatggcgg cattatcgac
     8761 ttctttcgtc gcggattagg caacggcgtc ttttcgctgg cgctctcgtt actgtacctg
     8821 ttgacgctgg cggtgagcat cgccatggtc gcccatgctt ttggcgctta tgccgtgcag
     8881 tttttgcatg aaggcagcca ggaggagcac cttattttgc tctacgcgtt ggggagcatt
     8941 gcggtgatga cgcttttcaa ctccttaagc aaccatgcgg tagggcggct ggaagtgatc
     9001 ctcgtcggca ttaaaatgat gatcctgtta ttgctgatta ttgccggtgt ctggtcgctg
     9061 caaccagcgc atatttccgt ctctgcgccc cccagctccg gtgcgttctt ctcctgtatt
     9121 gggataactt tccttgccta tgcgggcttt ggcatgatgg cgaacgcggc ggataaagtg
     9181 aaagatccgc aggtcattat gccacgggcg tttctggtgg cgattggcgt taccacgttg
     9241 ctttatatct cgctggcact ggttttgctt agcgatgtat cggcattaga gttagaaaaa
     9301 tatgccgata ccgccgtagc gcaggctgct tctccgctgc tcggacatgt gggttatgtg
     9361 atcgtcgtca tcggcgcttt actggcgacg gcttcagcca ttaacgcgaa cctgttcgcc
     9421 gtgtttaaca tcatggacaa catgggcagc gaacgcgaac tgccgaagct aatgaataaa
     9481 tccctgtggc ggcagagtac ctggggcaac atcattgtcg tggtgttgat tatgctgatg
     9541 acggcggcac tgaatttagg ctcactcgcc agcgttgcca gcgccacctt tttgatttgc
     9601 tacctggcgg tgtttgtggt ggcgatccgc ctgcgtcatg atattcacgc ctcgttgccg
     9661 attcttatcg ttggtacgtt ggtgatgttg ttggtgatcg ttggctttat ctacagtctg
     9721 tggtcccagg gtagccgtgc gttgatatgg attattggct cactcttact cagccttatt
     9781 gtggcaatgg tcatgaagcg caataaaacc gtataacatc tctctgtgcg cagtacttcc
     9841 tgtattattg tggtggcggt cgatattcgc actggcaaaa aaacgtgctt gaatatctgt
     9901 tgaaaccctt taacaaagca caggaggcgt tgcgcgaacg atgaacatca gcgatgtagc
     9961 aaaaattacc ggcctgacta gcaaagccat tcgcttctat gaagagaagg ggctggtgac
    10021 gccgccgatg cgcagcgaaa acggttatcg cacctacacg cagcagcatc tcaacgaact
    10081 gaccttactg cgccaggcac ggcaggtggg ctttaacctg gaagagagcg gcgagctggt
    10141 gaatctgttt aacgacccgc agcggcacag cgccgacgtc aaacggcgca cgctggagaa
    10201 ggtggcggag atcgaacgac acattgagga gctgcaatcc atgcgcgacc agctgctggc
    10261 actggcgaat gcctgccctg gcgatgacag cgccgactgc ccgattatcg aaaatctctc
    10321 cggctgctgt catcatcggg cagggtgatt aagacgagac ggctcggata tgtagggtta
    10381 tcccttctat cgcaatgact tcaacatgcg tacctgcacc gagatcctcg ctggcgctga
    10441 caggccatga actgtcaccg acgcgcatat gaccgcgccc gttgaccagc ggagattcca
    10501 gcacaaaacg tcggccaatc agctgctgcc cgcgctggtt taaatgacta tcgctgtgct
    10561 tttgttcgcg cacccgccgc gacaaccatt tccaccacag ccaggcggcg agcagcgtca
    10621 ggatggcaaa cattacccct tgccactccc aacccagcgg caccagccag accaccaggc
    10681 cggtaatcac cgctgccacg ccgctccaca acaaataacc atttccgccc agcatctcgg
    10741 ctgccagcag caaaccgccg agactgagcc agaaaatatg tggatgaacg accattaact
    10801 ccatcatggc tgagtccgtt tgttggcgct gtctttcacc agttcggcaa tcccggcaat
    10861 cgaccccatc aggctgctgg cctctaatgg catcatcact actttgctgt tactggagga
    10921 accgatctgc tgtaacgctt cggtgtattt ctgcgctacg aagtagttca ccgcctgaat
    10981 atcaccggag gcgatagctt cagacaccat tttggtggcg cgggcttctg cttcggcgga
    11041 acgttcacgc gcttcagcct gtaaaaacgc cgactgacgt tcgccttccg ctttcaggat
    11101 ttgcgactgt ttttcacctt cggctttgag gatttccgcc tgacggatcc cttccgcttc
    11161 aagaatgtaa gcgcgtttgg tacgttccgc tttcatctgc gcgttcattg aagagataag
    11221 ctctgccggt gggcgcacgt cgcgaatttc aatacgggtg actttaatcc cccacgggtt
    11281 ggtggcttca tcgacaatac gcagcaggcg tgagttgatg ctgtcgcgct gagagagcat
    11341 ttcgtcaagt tccattgaac ccaacacggt acggatgtta gtcatggtca ggttgatgat
    11401 cgccagctcc agattgctga cttcataggc agcgcgtggc gcgtcaatca cctgaataaa
    11461 acagactgcg tcgatggtaa cgttggcgtt atctttcgag ataacttcct gggaagggat
    11521 atcgagcact tgctccatca tattgatctt gcgaccaatg cgatccataa acggcaccac
    11581 cagactgagc cccggctgta acgttttggt atagcgacca aaacgttcta ccgtccattg
    11641 atagccctgc ggcacgattt tgacgcccgc gccgacaatg accagcgcga caaaaatgag
    11701 aatcgggata aagataagca tcggaaaaac ctcctgttgt accgtccata atcagcaaaa
    11761 ttgctgcttg attaaacaaa ttatacctga ttactgaaag agagttcccc cttattcctg
    11821 cgaaggataa actgttttta gtaaaaatca gaaaaaggga acagcgatgc aggaaaatag
    11881 tcctttgctt cagctacaaa acgtaggata tctggcgggt gatgcgaaga ttcttaataa
    11941 catcaatttt tcgctgcgtg ctggcgaatt taagttaatt accggtcctt ctggttgtgg
    12001 caaaagtacg ctgctaaaaa tagttgcttc attgatcagc ccaaccagcg gaacgttact
    12061 gtttgaaggt gaggatgtca gcacactaaa gccagaaatc taccgccaac aagtctctta
    12121 ctgcgcccag acaccgacgc tgtttggcga tacggtatac gataatctga tctttccctg
    12181 gcagatccgt aaccggcagc ctgacccagc catttttctc gattttctcg aacgcttcgc
    12241 cttgccggac agcattttga cgaaaaatat cgccgagcta tctggtggtg aaaaacaacg
    12301 catctcactg attcgtaacc tgcaatttat gccgaaggtt ttattgctgg atgaaatcac
    12361 cagtgcgctg gatgaaagta ataaacataa cgttaatgag atgatccatc gttatgtgcg
    12421 cgagcaaaat attgccgtgc tgtgggtgac acacgataaa gacgaaatta atcatgcgga
    12481 taaagtgatt acactgcaac cgcatgccgg agaaatgcag gaagcacgct atgaactcgc
    12541 ataatattac taacgaatca ttggcactgg cattaatgct ggtggtggtg gcaatcttaa
    12601 ttagccataa agaaaaactg gcgctggaga aagatatttt ctggagcgtc gggcgcgcga
    12661 taattcagct gattattgtc ggctatgtgc tgaagtatat tttcagcgtg gatgatgcca
    12721 gcctgacatt attgatggtg ttatttatct gctttaatgc ggcgtggaac gcgcaaaaac
    12781 gcagtaaata tattgctaaa gcttttatct catcgtttat tgccattacg gttggggcgg
    12841 gaattaccct ggcggtgctg attctctcag ggtcgattga atttatcccg atgcaggtga
    12901 tccctatcgc cgggatgatt gccggtaacg ccatggtagc ggtggggttg tgttacaaca
    12961 atttagggca acgggtcatt agcgaacagc aacagattca ggagaaactg agtcttggcg
    13021 cgacgccgaa gcaggcttca gcgatattga ttcgcgacag tattcgcgcg gctttaattc
    13081 cgacggtcga ttcagcaaaa acggttggct tagtgagttt accaggaatg atgtccgggc
    13141 tgatatttgc cgggattgat ccggtgaagg cgattaaata tcagattatg gtgaccttta
    13201 tgctgctctc aaccgccagc ttgtcgacca ttattgcctg ctatttaacc tatcgtaagt
    13261 tttataattc gcgccaccag ttggtggtga cgcaattgaa gaagaaatga tgcgatgccg
    13321 gatgcgcagc atcgcatccg gcgttgtggt tcatgtgccg aacaacggaa tatcaataca
    13381 acaatgcata cagctggcgg cgatacttcg acgccagtgc atcacccgta cccagcgcag
    13441 cgaggatctc ctggaacgtt ttacgcgtct gaccgtctgc ggcggtgaga tctttacgca
    13501 gatgcccgaa cagcaactcc agcgcctctt cattgcgccc aacctgatgc agttgcagcg
    13561 ccagttgcgt cgccagtgcg gcatcttctg gattctccgc cacctgctgt tgcaactgtt
    13621 gaatttccgg cgtatcagcc gcctgcttca gcagttcgat ttgcgccacc agcccctggt
    13681 agcgggtgtc ctgatcctgc aacggaatgg ttttcagcac cgcttccgca tcttcagaac
    13741 ggttcagcgc aatcagcgtt tctgccagca gcaggccgat ctccccgttc tgattcgaca
    13801 actgccaggc gtctttcagc aatggcaggg catcggtgta attgccttcc tgcatcagtt
    13861 gcatcgcctg ctgcgctttc agctcttctt cgcgcggcag cactttatcc agcagggcgc
    13921 ggatcgcctc ttccggttgc ggcccctgga agccatctac cggttgcccg ttctggaaca
    13981 gatacacggt cggaatcgcg cgcagaccaa actgggcggc aatcatctgc tccgcgtcgc
    14041 agtccagctt cgccagaata aattgcccgt tgtactgcgc cgcgaggctt tccaggatcg
    14101 gggttaactg caaacagtgc tggctacgtt cagaccaaaa atagaacagc accggagtgg
    14161 tcatcgactg ttcaagaacc tgttgcaggt tagattcgtt aatgttgaca atattttcta
    14221 cggacatgga gtcgctctct gttgtcgata ttttctttga catgggggct taagcgcgcg
    14281 cttcaactca cccctgcaat attttgtcca tcacgcgccc aggcagcagg cgcttgagca
    14341 ccattactgc ccaggtcacc agcgttaccg gatagcgcat cttcggcttc tcgctaataa
    14401 aagcatggcg cactttgtcg accaccgctt ccggtcccaa cgtaaagcgg gcggcgatgc
    14461 cgggattttc gactggttta tcactttgcg tctggttgac gttgtcggtg aagcgagtac
    14521 gaatgggacc gggttcgatc aggctgactt taattccgct gtggcgtagc tccatgcgca
    14581 gcgcgtctga ccacgcctcc agcgcatatt tactggccgc gtaagcgcca cgacccggcg
    14641 tggagattaa tcccatcacc gatgatgtca tcacaatacg cccttcaccg tgcggtaaca
    14701 tcgcgggtaa caggcgcatg gtgagctggt gtgcgccgaa aaagttggcg gaaaactgct
    14761 gttccatctg cgcacggctg atggtggaaa gggggccata catgccgaat ccggcattgt
    14821 taaagatccc atacagacaa ttatcggtca gggcgatcac ctcgtctgct gcgcgatcaa
    14881 cactttctgg tgaatccaga tcgatcaaca cgccggtaaa tcccatgttg ttcatacgct
    14941 caacatcatc cggttttcgg caacctgcca gcacatgaaa accctggcgt tttaattcga
    15001 gcgcgctttc caggccaatt ccactggaac atccggtaat taagaccgat ttttgcataa
    15061 ctttacctgt caggatctcc gttgctttat gagtcatgat ttactaaagg ctgcaactgc
    15121 ttcgccatcc agtcggcaat aaacggctgg gcgtcgcggt tgggatgaat accgtcatcc
    15181 tgcatccatt gtggcttgag gtagacctct tccataaaaa agggcagcag cggaacatca
    15241 aactctttgg cgagtttggg gtaaatggcg ctaaaggctt cattataacg gcgaccatag
    15301 tttgcaggca gacgtatttg cattaacaat ggttcagcgt tggcggcttt gacatcctgc
    15361 aaaatctggc gcagcgtttg ctcggtttgc tgtggctgaa aaccacgcaa accgtcattg
    15421 ccgcccagtt caaccagcac ccagcgcggc tgatgctgtt tcagcagagc cggaaggcgc
    15481 gccagtcctt gttgcgaggt gtcgccgctg atgctggcat taactaccga cgttttactc
    15541 tgccacttat cattcaacaa ggcaggccag gccgcgctgg cagacattcg atacccggcg
    15601 ctcaggctat cacccagaat caataacgtg tccgctgcgg cggcacggaa ggttaacagg
    15661 accaggaaca ggaagggcaa atgccagcgg aaaacattgt tgaagttcat catcttaaga
    15721 agtccgtcgg tcagggggag catgaactct ccatcctcac cggagttgag ctggttgtca
    15781 aacgtggcga gaccatcgca ctggtgggcg agtcgggatc gggtaagtca accttgctgg
    15841 cgatcctcgc cgggcttgat gacggcagca gtggcgaagt gagtctggtg ggacaaccgc
    15901 tacataatat ggacgaagaa gcgcgggcaa agttgcgcgc gaagcacgtc ggctttgttt
    15961 ttcagtcatt tatgttaatt cctaccctta acgcgctgga aaacgtcgag cttccggctc
    16021 tgctgcgcgg tgagagtagc gcggaaagtc gtaacggggc gaaagcgttg ctcgaacagt
    16081 tagggctggg taaacgtctg gatcatcttc cggcacagct ttccggcggt gaacagcaac
    16141 gagtggcgct ggcacgagcc tttaatggtc gacctgatgt gctgtttgcc gacgaaccca
    16201 ccggcaacct tgaccgccag acgggcgata aaattgccga cctgctgttt tccctcaacc
    16261 gtgaacatgg caccacgttg attatggtga cccacgacct gcaactggcg gcacgctgcg
    16321 accgctgctt acggctggtg aacgggcagt tgcaggagga agcatgattg cacgttggtt
    16381 ctggcgcgaa tggcgttcgc cgtcgctatt aattgtctgg ctggcgctaa gcctggcggt
    16441 ggcctgcgtg ctggcgctgg gcaatatcag cgatcgcatg gagaagggct taagccagca
    16501 aagccgtgag tttatggcgg gcgatcgggc gttgcgcagt tcacgcgaag tgccgcaagc
    16561 gtggctggag gaagcgcaaa agcgcggcct gaaagtcggc aagcagctga ctttcgccac
    16621 aatgaccttt gcaggcgaca caccgcagct ggcgaacgtc aaagcggtgg atgatatcta
    16681 cccgatgtat ggcgatctgc aaactaatcc ccctggcctg aaaccgcagg cgggcagcgt
    16741 attgctggcc ccacgcctga tggcactgct taacctgaaa acgggcgaca ccattgacgt
    16801 gggcgatgcc accttgcgga ttgccggaga agtgattcag gaaccggatt ccggttttaa
    16861 ccccttccag atggctccgc gtctgatgat gaatctggcg gatgtcgata aaaccggagc
    16921 cgtgcagccg gggagtcggg tcacctggcg ttataaattc ggcggcaacg agaaccagct
    16981 cgacggctat gagaaatggt tgttacctca gcttaaaccc gaacaacgct ggtacggtct
    17041 ggaacaggac gaaggcgcgc tggggcgatc gatggaacgc tcgcaacagt tcctgctgct
    17101 ttcggcgctt ctgaccttgc tgctggcagt ggcagcggtg gcggtagcga tgaatcatta
    17161 ctgtcgcagt cgctacgatc tggtggcgat cctcaaaacg ctgggggcag ggcgagcgca
    17221 actgcgtaag ctaatcgtcg gtcagtggtt gatggtgctg acgctttcag ccgttaccgg
    17281 tggggccata ggcctgttgt tcgaaaacgt gttgatggtg ctgctcaagc ccgttctgcc
    17341 tgctgcacta ccgccagcca gcctctggcc gtggctgtgg gcgcttggca ccatgacggt
    17401 catctcgctg ctggtggggc tacgaccata ccgcttgttg ctggcaacgc agcctttacg
    17461 cgtattacgt aatgatgtgg tagcgaacgt ctggccgctg aagttttatc tgccgattgt
    17521 cagtatggtg gttgtgctgc tgctcgccgg attaatgggt ggcagcatgc tgctttgggc
    17581 ggtgctggcg ggcgcggtag tactggcttt gctgtgcggt gtgctgggct ggatgcagct
    17641 gaatgtactt tgccgcatga cgctgaaatc gctacctctg cgcctggcgg ttagccgcct
    17701 gttacgtcag ccgtggtcaa cgttaagcca gctttcggca ttttcgctct cctttatgct
    17761 gctggcgctg ttgctggtat tgcgttgcga tctgctcgac cgctggcagc agctaccgcc
    17821 agaaagcccg aactactttt taattaacat cgccacagaa caggtagcac cgctaaaagc
    17881 gttcctcgcg gaacatcata tagtcccgga atcattttat ccggtagtgc gggcgcggct
    17941 gacggcgatt aacgataagc cgacagaagg taatgaagat gaggcgctta atcgcgaact
    18001 caatcttacc tggcaaaata cgcggcccga tcataatccg attgtcgccg gtaactggcc
    18061 gccaaaagcc gatgaagtgt cgatggaaga ggggctggcg aaacgcttaa acgttgccct
    18121 cggtggtacc gtgactttta tgggcgatac ccaggagttc cgcgctaaag tgaccagcct
    18181 gcgcaaagtg gactgggaaa gtctgcggcc taatttctat tttattttcc cggaaggggc
    18241 attagacggg caaccgcaga gctggcttac cagtttccgc tgggagaatg gcaacggcat
    18301 gttgacgcaa ctcaaccgcc agttcccgac cattagcctg ttagatattg gcgcgatttt
    18361 aaaacaggtc ggttaggtgc tggagcaggt aagtcgggcg ctggaggtga tggtggtgct
    18421 ggtcaccgcc tgcggtatgt tgctgttgct ggcacaggtg caggtgggaa tgcgccagcg
    18481 tcatcaggag ctggtggtat ggcgcacact cggtgcgggg aaaaaactgc tgcgcacgac
    18541 attgtggtgt gagttcgcca tgcttgggtt tgtttccggc ctggtggccg caattggtgc
    18601 ggaaacggca ctggcagtgt tgcaggcgaa cgtgtttgat ttcccgtggg agccagactg
    18661 gcgattgtgg attgttctgc cgtgcagcgg tgcgctgctg ctgtcgcttt tcggcggctg
    18721 gctgggggcg cgactggtta agggtaaggc gctgttcagg cagtttgcgg ggtgatgaga
    18781 gtaaataagg ggcgttctgg ttgaatggaa cgccttgttt aaattaattc tacaatatgt
    18841 ttcattgatg atgttattga attggtgatt tcctatcttt ctattgctga tattaatctg
    18901 aattggtgga gtttaataat tttaaatata gccctacaaa aataactcag actaataaaa
    18961 tcataaatca tatgcgttga atggatatta tccatatagt gaatttgttg atgatgaatt
    19021 catctgtgct aaaaatttta gtttaataaa atattgaaag tgacctgtaa taacagttat
    19081 tgttgattga gaacaaataa gtttatgtga aaaatatata aatacattag ctggtcatgt
    19141 gtgtcatttt atttttttgt tgctaacaca gggatatgaa caataactaa aagggcactt
    19201 tatatgagcg gaaaaccagc ggcgcgtcag ggagatatga ctcagtatgg cggtcccatt
    19261 gtccagggtt cggcaggtgt aagaattggc gcgccaactg gcgtggcgtg ctcggtgtgt
    19321 ccgggcggga tgacctcggg caacccggtg aacccgctgc tcggtgcaaa agtacagccc
    19381 ggcgagacgg accttgcgct gcccgacccg ctgccgttca ttctctcccg cacctacagc
    19441 agctaccgga cgaagacgcc tgcgccagtg ggaacttttt ggccccggct ggaaagcgcc
    19501 ttctgatatc cgcttacaga tacgcgatga tgcactggta ctcaacgaca acggcgggcg
    19561 gagcattcac tttgagccgc tgctgccggg gaaggctgtg tacagccgca gtgagtcaat
    19621 gtggctggtg cgtggcggta aggcagcgca gccggacggc cacacgctgg cacgactgtg
    19681 ggcgtcgctg ccgccggata tccggttaag cccgcatctt tacctggcga ccaacagcgc
    19741 acaggggccg tggtggatac tggggtgatc tgagcgggtg ccgggtgctg aggacgtact
    19801 gccagcgccg ctgccgccgt accgggtgct taccgggatg gcggaccgct tcgggcggac
    19861 gctgacgtac cggcgtgagg ccgcaggcga cctggccggg gaaatcaccg gcgtgacgga
    19921 cggtgccggg cgggagttcc gtctggtgct gaccacacag gcgcagcagg cggaagaggc
    19981 ccggcagcag gcggtcgtcg ccggagcaaa acgaccggac attcctgatt cactgccgga
    20041 gagcacagag tacggccccg acaggggtat ccgcctttcg gcggtgtggc tgatgcacga
    20101 cccggcatac ccggagagcc tgcccggtgc gccactggcg cggtacacgt atacggaagc
    20161 cggtgaactg ctggcggtat atgaccgcag caatacgcag gtgcgcgctt tcacgtatga
    20221 cgcgcagcac ccgggccgga tggtggcgca ccgttacgcg ggaaggccgg agatgcgcta
    20281 ccgctacgac gatacggggc gggtggtgga gcaactgaac ccggcagggt taagctaccg
    20341 ctatctttat gagcaggacc gcatcaccgt caccgacagc ctgaaccggc gtgaggtgct
    20401 gcatacagaa ggcggggccg ggctgaaacg ggtggtgaaa aaagaactgg cggacggcag
    20461 cgtcacgcgc agcgggtatg acgcggcagg aaggctcacg gcgcagacgg acgcggcggg
    20521 acggcggaca gagtacggtc tgaatgtggt gtccggcgat atcacggaca tcaccacacc
    20581 ggacgggcgg gagacgaaat tttactataa cgacgggaac cagctgacgg cggtggtgta
    20641 cccggacggg ctggagagca gccgggaata tgatgaaccg ggcaggctgg tatcggagac
    20701 atcgcgcagc ggggagacag tacgctaccg ctacgatgac gcgcacagtg agttaccggc
    20761 gacgacaacg gatgcgacgg gcagcacccg gcagatgacg gcggttcacc gcgaggaagg
    20821 tatcagcctt taccgccact atgacaaccg tggccggtta acctcggtga aagacgcaca
    20881 gggccgtgaa acgcagtatg agtacaacgc cgcaggcgac ctgactgccg ttatcacccc
    20941 ggacggcaac cggagcgaga cacagtacga tgcgtgggga aaggcggtca gcaccacgca
    21001 gggcgggctg acgcgcagta tggagtacga tgctgccgga cgtgtcatca gtctgactaa
    21061 cgagaacggc agtcacagcg acttcagcta cgatgcgctg gaccggctgg tacagcaggg
    21121 cggctttgac gggcggacgc aacgttatca ttatgacctg accggaaaac tcacgcagag
    21181 tgaggatgag gggcttgtca ccctctggca ctacgatgcg tcggaccgca tcacgcaccg
    21241 gacggtgaac ggcgacccgg cagagcagtg gcagtatgac ggccacggct ggctgagaga
    21301 aatcagccac ctgagcgaag gccaccgtgt cgctgtccac tacggctacg acgataaggg
    21361 ccgcctgacg ggcgaacggc agacggtgga gaacccggag acgggggaac tgctgtggca
    21421 gcatgagacg aaacacgcct acaacgaaca ggggctggca aaccgcgtca cgccggacag
    21481 cctgccgccg gtggagtggc tgacctacgg cagcggttac ctggcgggca tgaagctggg
    21541 cgggacgccg ctggtcgagt atacgcggga caggctgcac cgtgagacgg tgcgcagctt
    21601 cggcagcatg gcaggcagta atgccgcata tgaactgacc agcacataca cccccgcagg
    21661 ccagttacag agccagcacc tgaacagcct ggtgtatgac cgtgactacg ggtggaatga
    21721 caacggcgac ctggtgcgca tcagcggtcc gcgacagacg cgggaatacg gctacagcgc
    21781 cacgggcagg ctggagagcg tgcgcaccct cgcaccggac ctggacatcc gcatcccgta
    21841 tgcgaccgac ccggcgggaa accggctgcc ggacccggag ctacacccgg acagcacgct
    21901 cacggcgtgg ccggataacc gcatcgcaga ggatgcgcac tatgtttacc actatgatga
    21961 atacggcaga ctgacggaga agacggaccg catcccggcg ggtgtgatac ggacggacga
    22021 cgagcggacc caccactacc actacgacag ccagcaccgc ctggtgttcc acacgcggat
    22081 acagcatggc gagccactgg tcgagagccg ctacctctac gacccgctga gccgccggac
    22141 ggggaaacgg gtgtggcgtc gcgagcgtga cctgacgggg tggatgtcgc tgtcgcgtaa
    22201 accggaggtg acgtggtacg gatgggacgg cgaccggctg acgacggtac agaccgacac
    22261 cacgcgtatc cagacggtat accagccggg gagcttcgcg ccgctcatcc gcatcgaaac
    22321 agacaacggt gaacgggaga aagcgcagtg ccgcagcctg gcggagaagt tacagcagga
    22381 agggagcgaa gacggtcacg gtgtggtgtt cccggctgaa ctggtggggc tgctggacag
    22441 gctggagggg gaaatccggg caaactgcgt gagcagtgaa agccgccagt ggcttgcgca
    22501 gtgcgggctg acggtggagc ggctggcggc acagatagag ccggtttatt tgcctgagcg
    22561 aaaaatacat ctttatcact gtgaccaccg gggcctgccg ctggcgctta tcagtgaaga
    22621 cggcaatacg gcgtggagcg cggaatatga tgaatggggc aaccagctta atgaggagaa
    22681 cccgcatcac ctgcaccagc cgtaccggct gccggggcag cagtatgata aggagtcggg
    22741 gctgtactac aaccggaacc ggtactacga tccgttgcag gggcggtata tcactcagga
    22801 cccgataggg ctggaggggg gatggagtct gtatgcgtat ccgctgaatc cggtgaatgg
    22861 tattgatcca ttagggttaa gtcccgcaga tgtagcgcta ataagaagaa aagatcaact
    22921 a
//
LOCUS       DAJVUP010000056        22866 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.056, whole genome shotgun sequence.
ACCESSION   DAJVUP010000056 DAJVUP010000000
VERSION     DAJVUP010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22866
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.056"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            39..968
                     /gene="aaeR"
                     /locus_tag="OQQ75_001971"
     CDS             39..968
                     /gene="aaeR"
                     /locus_tag="OQQ75_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AaeR"
                     /protein_id="HCS1976315.1"
                     /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDEL
                     QVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM
                     AQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA
                     MPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF
                     VTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDK
                     LPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK"
     gene            complement(1096..2541)
                     /gene="tldD"
                     /locus_tag="OQQ75_001972"
     CDS             complement(1096..2541)
                     /gene="tldD"
                     /locus_tag="OQQ75_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HCS1976316.1"
                     /translation="MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY
                     HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD
                     SGDGKVQTLGAVGHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS
                     GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLD
                     GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR
                     GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ
                     DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG
                     GGQVDITSGKFVFSTSEAYLIENGKVTKPVRGATLIGSGIETMQQISMVGNDLKLDNG
                     VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA"
     gene            complement(2697..6497)
                     /gene="yhdP"
                     /locus_tag="OQQ75_001973"
     CDS             complement(2697..6497)
                     /gene="yhdP"
                     /locus_tag="OQQ75_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709041.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA2 domain-containing protein YhdP"
                     /protein_id="HCS1976317.1"
                     /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKI
                     ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR
                     WQFRDLTFWQLRFRTNTPITSGGGNDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG
                     QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ
                     ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT
                     HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS
                     DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR
                     FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD
                     GQATISWLNNDKGFHLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS
                     QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR
                     NAKFAFQPDWPALTNLDIELDFINDGLWMKTDDVNLGGVRASNLTAVIPDYSKEKLLI
                     DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV
                     TLRNNSLFIKLLDSTLKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ
                     VAVNLNGNWQPAKTGVLPAAVNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNV
                     SSHLPSPLAKPAGEPLPVNVKVDGNLSSFELTGQAGADNHFNSRWLLGQKLTLDRAIW
                     AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS
                     LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR
                     GDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDLTISGDTLTLTNGLI
                     DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLH
                     WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF
                     GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEIS
                     ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK
                     EKAQ"
     gene            complement(6565..8034)
                     /gene="rng"
                     /locus_tag="OQQ75_001974"
     CDS             complement(6565..8034)
                     /gene="rng"
                     /locus_tag="OQQ75_001974"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HCS1976318.1"
                     /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG
                     RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD
                     LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE
                     YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR
                     VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI
                     QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR
                     TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE
                     ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM"
     gene            complement(8024..8617)
                     /gene="yhdE"
                     /locus_tag="OQQ75_001975"
     CDS             complement(8024..8617)
                     /gene="yhdE"
                     /locus_tag="OQQ75_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase YhdE"
                     /protein_id="HCS1976319.1"
                     /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY
                     VVRLAHKKAQAGVAQTAQDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ
                     VMTAVVLADSQHILDCLVVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFV
                     RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG"
     gene            complement(8626..9114)
                     /gene="mreD"
                     /locus_tag="OQQ75_001976"
     CDS             complement(8626..9114)
                     /gene="mreD"
                     /locus_tag="OQQ75_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HCS1976320.1"
                     /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL
                     YWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ
                     QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA
                     VQ"
     gene            complement(9114..10199)
                     /gene="mreC"
                     /locus_tag="OQQ75_001977"
     CDS             complement(9114..10199)
                     /gene="mreC"
                     /locus_tag="OQQ75_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HCS1976321.1"
                     /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT
                     AVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA
                     RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ
                     VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD
                     VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG
                     ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPTTGIAQPTPQQPTTGNAATA
                     PAANRSPQRATPPQSGAQPPARAPGGQ"
     gene            complement(10265..11308)
                     /gene="mreB"
                     /locus_tag="OQQ75_001978"
     CDS             complement(10265..11308)
                     /gene="mreB"
                     /locus_tag="OQQ75_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000913396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="HCS1976322.1"
                     /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD
                     RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG
                     SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI
                     KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     gene            complement(11613..13553)
                     /gene="csrD"
                     /locus_tag="OQQ75_001979"
     CDS             complement(11613..13553)
                     /gene="csrD"
                     /locus_tag="OQQ75_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E specificity factor CsrD"
                     /protein_id="HCS1976323.1"
                     /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA
                     VATAIDTHLVSNDFSTLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSD
                     LFRELSVPLIKYPGMSLRLVYQDPMGNYFHSLMTTAPLTGAISFIIVMLFLAVRWLQR
                     QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT
                     LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS
                     QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDT
                     LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK
                     GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM
                     VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS
                     QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL
                     KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQG
                     DFFASSQPLDTNVKKYSQRYSV"
     gene            13705..14679
                     /locus_tag="OQQ75_001980"
     CDS             13705..14679
                     /locus_tag="OQQ75_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1976324.1"
                     /translation="MQALLLEQQDGKTLASVQTLDESRLPEGDVMVDVHWSSLNYKDA
                     LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA
                     RVKGDWLVAMPQGLDARKAIIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
                     STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRILPRDEFAESRPLEKQVWAGAIDT
                     VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA
                     QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN"
     gene            15657..16127
                     /gene="accB"
                     /locus_tag="OQQ75_001981"
                     /gene_synonym="fabE"
     CDS             15657..16127
                     /gene="accB"
                     /locus_tag="OQQ75_001981"
                     /gene_synonym="fabE"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HCS1976325.1"
                     /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM
                     QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF
                     IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE"
     gene            16138..17487
                     /gene="accC"
                     /locus_tag="OQQ75_001982"
     CDS             16138..17487
                     /gene="accC"
                     /locus_tag="OQQ75_001982"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HCS1976326.1"
                     /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL
                     ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF
                     IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA
                     SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG
                     QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE
                     FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA
                     VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG
                     ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK"
     gene            complement(17579..18626)
                     /locus_tag="OQQ75_001983"
                     /pseudo
     CDS             complement(17579..18626)
                     /locus_tag="OQQ75_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000787050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
     gene            complement(18623..19586)
                     /locus_tag="OQQ75_001984"
                     /pseudo
     CDS             complement(18623..19586)
                     /locus_tag="OQQ75_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048618.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
     gene            complement(19608..20597)
                     /locus_tag="OQQ75_001985"
                     /pseudo
     CDS             complement(19608..20597)
                     /locus_tag="OQQ75_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525780.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(20598..22097)
                     /locus_tag="OQQ75_001986"
     CDS             complement(20598..22097)
                     /locus_tag="OQQ75_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HCS1976327.1"
                     /translation="MTDVILDVSHIAKTFGHVQALKDITLSLRKGRVHTLLGENGAGK
                     STLMKILAGVYPPTQGTITLRGETITINNPQHSRQLGIAIIFQELSLSNNMTVAENIY
                     ANNEPRRFGIINDKKMLADCQNLLAERGIPLDPLEMVGNMSMAHRQLVEIAKALSYAA
                     DVVIMDEPTSSLSDNEAEILFNIIEKLKQRGCAVIYISHRMDEIMRISDDISVIRDGE
                     YIATHEKKNSDIQHLIAQMVGREMKNIWPARLGEIPDENVPAKLEVKNLSHPSLFKEI
                     SFAVRPGEVLGFFGLVGAGRSDVMKALFGLVSYQGTVLIDGKEVRITNPKQAIDHGIA
                     FVTENRKEEGLVLMHDVNMNTHHVAFQYNASRMGLINHRQEEAKTLQSIARMNTKVSS
                     VHQAVGALSGGNQQKIVLSKWLEKTPRILLLDEPTRGVDVGAKFEIYNVIRQLAAAGT
                     AIILVSSELPEVMALSDRLVVMRNKTIADIYSCENLTQTQVMTAATGVR"
     gene            complement(22158..>22866)
                     /locus_tag="OQQ75_001987"
     CDS             complement(22158..>22866)
                     /locus_tag="OQQ75_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS1976328.1"
                     /translation="LFANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADK
                     AGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLNGKGTVASISYPALQSVV
                     ARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQANANLNGLFGFGDDAALAA
                     VIAAKSAHNDNIKIIGFDGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNG
                     KPVEKMIPVQPGVYTGK"
BASE COUNT         5669 a         6193 c         5459 g         5545 t
ORIGIN      
        1 attatgtgat ctaaatcact tttaagtcag agtgaataat ggaacgacta aaacgcatgt
       61 cggtgtttgc caaagtagtt gaatttggct cttttaccgc cgccgccaga cagctacaga
      121 tgagcgtttc gtccatcagt cagacggtgt caaaactgga agatgagttg caggtaaagc
      181 tgttaaaccg tagcacacgc agcattggcc tgaccgaagc cggtagaatt tactaccagg
      241 gctgccgtcg tatgcttcat gaagtgcagg atgttcatga gcaactgtat gccttcaata
      301 acacccccat cgggacgcta cgcattggct gttcttcaac tatggcacaa aatgttctcg
      361 ccgggctgac agccaaaatg ctgaaagaat acccaggttt gagcgtcaat ctggttaccg
      421 gaattccagc ccccgacctg attgccgacg gtctggatgt ggtgatccgc gtcggcgcgt
      481 tgcaggattc cagcctgttt tcccgccgtc ttggcgcgat gccaatggtg gtgtgcgccg
      541 cgaaaagcta tctcacacaa tacggcatac cggaaaaacc cgccgattta agtagccatt
      601 catggcttga atacagcgtg cggcccgaca atgaatttga actgattgca ccggaaggga
      661 tctcgactcg cctgatcccg caagggagat ttgtgactaa tgatccgatg acgctggtgc
      721 gctggctaac ggcgggtgcc gggatcgcct acgtgccgct gatgtgggtg atcaacgaga
      781 tcaatcgtgg ggagctggag atcctgctgc cgcgttatca gtcagatcca cgcccggttt
      841 atgcgttata taccgaaaaa gataagctgc cgctgaaggt acaggtcgtg atcaactcgc
      901 tgacggatta ttttgttgag gtcggtaaat tgtttcagga gatgcacggg cgcgggaaag
      961 agaagtaatt catattgtac tgttacgttc tacaaacctg tgccaacggg ttcccctcac
     1021 cctaacccca gaggagcgag gggaccgttc gtgcacgtag aaagattaat tatccttctg
     1081 aaaataatga aattattacg cagtaccgcc aacagtcagg ttatcaactt tcagcgttgg
     1141 ctggcccacg ccaaccggca aactttgccc ttctttaccg cagacaccca cgccgttatc
     1201 cagtttcagg tcgttgccaa ccatcgaaat ctgctgcatg gtttcgatac cggaaccaat
     1261 caacgttgcg cctctcaccg gcttcgttac tttaccgttt tcaatcagat atgcttctga
     1321 agtggagaaa acgaatttgc cggaggtgat atccacctga ccgccaccaa agttcggtgc
     1381 atagataccg tactcaacgg attcaataat ttcctgcggg gtcgatttac ccggcagcat
     1441 ataggtgttg gtcatacgcg gcatgggcag atgggcgtag gattcacggc gaccgttgcc
     1501 agtcggcgtc atccccatca aacgcgcgtt gagtttatcc tgcatgtagc ctttcagaat
     1561 gccgttctca atcagcacgt tgtactggcc tggcgtacct tcgtcatcaa tcgccaccga
     1621 accacggcga tcgaccatcg tgccgtcatc aaccacggta cacagttctg aagccaccag
     1681 ctccccgacc tgcccactaa atactgaagt gccgcggcgg ttgaagtcgc cttccagacc
     1741 gtgacctacc gcttcatgca acagcacgcc cggccaacct gcgccaagta ctaccggcat
     1801 ggtgcccgct ggtgcagcaa cggcagaaag attgaccagc gccatacgca ctgcttcttt
     1861 tgcccatgca tccgcacgga cttcgccgtc aagatcggca aggaagaact cataaccaaa
     1921 acgaccgcca ccgccactgg caccgcgttc gcgtttgcca tcttcttcga ccagaacgct
     1981 cacggaaaga cgcaccagcg gacggacatc cgccgctagc gtgccgtcgg tggccgcaac
     2041 cagaattaat tcatagacac cactgaggct ggcagtcact tcctgtacgc gcttgtccgc
     2101 ttcgcgagca accttatcga cgcgacgcag gatatccagc ttctcttcac ggctcatgct
     2161 ttgcagcgga tctaccgagg tatacaacgg gctatgccct accgcgccca gcgtctgtac
     2221 tttgccatca ccactatcac ggacgatggt gcgcgccgct tgcgcactct gttccagcgc
     2281 cagcaggctg atttggtcag cgtaagcaaa tccggttttt tcaccgctga ttgcacgcac
     2341 gccaacgccc tgatcgatgt tgtaagaacc atctttaata atgcggtctt ctaaaaccca
     2401 ggattcgtga tagctcgact gaaaatagag atcgccataa tcaaggcgac gttcggccag
     2461 ttgaccgagg atcgcgaaca agtcctgatg tttcaggccg ttcgccgcta gcaattgttc
     2521 acttactagg ttaagactca tcgtttttgc tactcgttag ttactgcagt agaggatttt
     2581 ttacggctgc cggatgcggc gtgaacgccc tatccgacct acggttatgt tctggctcgt
     2641 tggcctttgg caacgattat catatgagat tggggcaatt acgcgccctc gtcaaatcat
     2701 tgcgcttttt ctttacgcgg ttggcgcaac acttcgttga tttgcggatc gtccagcgga
     2761 cccgaaatgt gatagcgcaa aatggagact ttgctccaca gcggccccag cactttactg
     2821 gctgcaaata ctgccgcgcc aacaatgggg ttaaccgcaa aagccgcagc cacgcccacc
     2881 gtcgcagaaa tctctggtgc gacaaccgct tccatattca ggtcgcgacg taccagattt
     2941 accgaccctt tcatggcgat atccgcctcc aggccatcca ccagcgtgtc gtcggtgtgc
     3001 ataacgccgt ctttaatcca cgcggtgctg cgaatggagt caaaatagaa cccttcgcca
     3061 aaagtgtctc tgaaatcaaa acgcagctta cgcatcaggg catcaacgct caataagcgc
     3121 agcaattgcc cggcatgtcc ggtattgatt tcggtaattt cgcctttacc cagttgagta
     3181 tgaatgatgc cattcaacgt cgcctcatct ggttgccagg gtgctttgcg ccagtgtaaa
     3241 tcgtaatcca cattaaatga cgactggcgt atgggcgtcg tgacaccaaa aaattctgcg
     3301 gcggcatcaa ttttctgccc gcgcagtttt cctttcagcg aggtacgttc attccccgga
     3361 ttattaaccc attcaccatc ggcagtaagc cgcgagaaac cagtatcaat cagtccattg
     3421 gtcagcgtta acgtatcgcc agaaatggtg agatcactgt caatacgacc gaatttttgc
     3481 ccccagaacc agcactctgt gcatcgtatt tgtgcgtccg gccagccacg gaagttaatg
     3541 cgctccgttg tcgggaaagg tgatgacggt gttgaatcac cacgagtttt cgccacgctc
     3601 gggttgtaat aaagatattt gatattcgcc agccacggcg cgttattacg catcgccagc
     3661 gtggcattga tttcacgccc ctgtgcctca accagggtgc catttgccgt cggttgcgaa
     3721 acaatactca ggttattcca ttgctgattt cccagtgaca acataggcgt acgtaacgtt
     3781 atgtgttgtg ggaaactcgc tgcaccaccg acactctccg cagcgccttt ctggaacagg
     3841 gccagccact cggcaccatt catcggcggc atattgagtt caacgccact ttgttccggc
     3901 aacggcggga gcgttttact gtctgccgcc caaatagcac gatcgagcgt cagcttttga
     3961 ccaagcaacc agcggctatt gaaatggtta tccgcaccag cctgtccggt taattcaaag
     4021 ctgctgagat tgccatcaac cttaacgttt accggcagtg gttcacccgc aggtttggct
     4081 aacggtgaag gtaagtgact gctcacatta ttcagatcgc cgttcagctc tacgttatag
     4141 gtcgcgccag catgataagg cagatcaatg cccactttac catcccacgc cacgctgcca
     4201 ctcaatgctt cgttcaccgc tgcaggcaga acgccggttt tcgccggttg ccagttaccg
     4261 ttgaggttta ccgcaacctg gtaggctttt gccccttctt tggtggaaaa atccacgttc
     4321 aacggctgat taaaccagct tgctgtcagt ggttcacttt gcagatcgcc attgataaag
     4381 ctgaatttac cgctcaaatt tttcagggtg ctgtcgagta gtttgataaa cagactgtta
     4441 ttacgcagcg tcacttcacc tttcgcggtt accagttcgc cgttcagcgg gatatcaaga
     4501 tgtaagcgag cattcacatc gccgtcgagc tggagttctt gcagggtcgc acccagagaa
     4561 tctttcagcg gtgtctcatc aaagtaaggg ccaacggctt tacccggacc tttaatgtca
     4621 gcgtcaatca gcagtttttc tttcgagtag tcagggatca ctgcggtgag attactcgcg
     4681 cgcacgccgc ccagattaac gtcatcggtt ttcatccata aaccgtcgtt aataaagtcc
     4741 agttcaatat caaggttagt taatgcaggc cagtccggct ggaaggcaaa cttcgcgtta
     4801 cgcagcggca ccagcacttc aaactgacct tcgttgtgtt tataggggaa gagttgcgga
     4861 ttgccaccat aaaccagcgt cgcgttatcc gcttcaccgc cctgaatcgc gccacttaag
     4921 taatcaacta ggtctttacc catcaagttt tccgggaaat agcgccaggc ttgtgaacca
     4981 tcatcggtac tgatgccagc cagaataccc agccagggtt catcgttagc aggttgcagg
     5041 taacgaaaac cgccgcgcgc atggacagct ttggctttaa cgtcaatatt acgcccatcc
     5101 aggtggaaac ctttgtcatt gttcagccag cttatagttg cctggccgtc ggcgatttcc
     5161 agtggcgcac ggaataccgt ttcgtaaggc atctttgcct gcttcatcga cgcggtaagc
     5221 aaaccatttt caacgctgcc ggaaagcgtc ccggagaagt gttccgcacc cggtaataat
     5281 ttccattgct tccaggccag atcgctccac gatgcctgaa aacgggtctt gtctgccgcc
     5341 tgaagcggga tatccagcgc cagagtgtta atcttgccgc tcggttgtgt ggagcgccaa
     5401 acatcaccca gtgcaggtga aagtttcgcg gccagcgggc gtatgccctc caggcctgcc
     5461 agctccagat tactggcgcg aatccggagt tcgtcactgc gtttattgtc tttgccgcca
     5521 acgtcctgtt ccggtatcca ggccagcgtc aatgctccgc tcggccaggg tttgccgtcc
     5581 atcgtgatcc gtgtatcggg aatagagaac tgccagcccg gattttcacg cgtaatatgc
     5641 gcggtcagat tatccaccga cagcgtatgc gtttgcttct cgcccaacca gctggcaccg
     5701 ccctgtttca gccagacgtc accgccggtt acatcgcctt tgtcgatcgt catccagcct
     5761 tcaagggaga actgtgccgt ttccagagca atattgtcct gcatccattt accgagccac
     5821 ggcttcaggt cgatgtcatc cgcctgtagc cagacgcgac cattgcttaa caacccctca
     5881 tcatcgcgca aatccatgcg cacctgcatc acgccgtgct gtccggtaag gctggagagg
     5941 cttaccaggc cttccgcacg gtgtcgacgt ggatcgttca gccaggtgag ttgtgggatc
     6001 gccagctcgg cgcgctgacc ggatggcgtc agaaaactga cttcactgtc gcggagatcg
     6061 aaatggtcaa attgacgaag aaacagatcg ctgatgtgac tggcttccag gctatcatta
     6121 ccaccaccgc tggtgatagg agtgttggtg cgaaagcgca gctgccagaa agtgaggtcg
     6181 cgaaactgcc agcgcatatg taacaagctc tgccagacat ccagcgccag agtaacgcgt
     6241 ttaaccgaaa attcgccgcc atcttttagt tctgcacgga tgtcgtgtgc ttcaagcgtc
     6301 gggccaaaat tctgccagct ggctgagagc tgactggctt ctaccggcat gccagtcgcg
     6361 gattctattt tgttgaggat ttccggacgc caggcgtcaa gatgcggtaa agcaatacgc
     6421 aggccgctaa ccagcagggc tgcgatcaca acgagcgcgg ctccagtaag cagtaaaatc
     6481 cccggcaatc gcctcacccg tcactccttg tctgctaaaa atgtgactca aaaacccttt
     6541 gccggatggc ggcccagcat ctgtttacat cattacgacg tcaaactgct cctggttata
     6601 gagcggttca atttgtactt taacctgttt gccaacgaaa atttccactt ccgccagcga
     6661 gtgtgactct tcgcctttca aggcttcagc tactgccgga gaagcataga ccaggaaacg
     6721 gtcggagtcg taagcatggt ggacacgaac aatctcgcgc atgatttcat agcataccgt
     6781 ttccacggtt ttcaccgttc cgcgaccgtg gcaggttggg cattcgttac acagtacgtg
     6841 ctcaatgctt tcgcgggtgc gtttacgcgt catctccacc agccccagcg ccgaaaaacc
     6901 attaacgctg gttttcaccc ggtctttgct caacgcctgc tccagcgagt gcagcacgcg
     6961 gcggcggtga tcttcattat tcatatcgat gaaatcaata atgataatcc cacccagatt
     7021 acgcaaccgt aactggcgag cgatagcctg cgtcgcttca atattggtat tgaaaatggt
     7081 gtcgtccaga ttgcgatgac cgacaaacgc tccggtattg atgtccacgg tggtcatcgc
     7141 ttcggtctgg tcgataatca gataaccacc ggatttcagt tctactttgc gttccagcgc
     7201 tcgctggatt tcgttttcga catcaaagag atcgaaaatc ggctggcgtc cggtgtaatg
     7261 ctccagcttg ctggtcatct cgggaatgta ctccgaggta aactccagca atgcttcgta
     7321 agtcaggcgt gagtcaacgc gaatgcggtc cagttcggcg tcggcgaaat cacgcagaac
     7381 acgctgcgcc agcgccagtt cgccgtacag ctgataacgg gtctgcgggc gttttttacg
     7441 ctccataact ttggtccaga cgcgtttcag ataagcggca tcggaggcca gttcagcctc
     7501 gccaacccct tccgctgcgg tacggatgat aaacccgccc tgctcgtcgc aatactctgc
     7561 gaccactttt ttcaggcgtt cacgttctga ttcgctttca atacgttggg aaaccccaac
     7621 gtgagaagcc cctggcataa acaccagata gcgagaaggc agcgtgatat cggtggtcag
     7681 gcgcgcacct ttagtgccaa gcggatcttt caccacctgc accatcagat cttgcccctg
     7741 acgaaccagt tccgagatgt cgcgcaccgt gaattgcttt tgttcttcac ccgccacaca
     7801 ttcggtgtgc ggcatgatat cggatgcatg aagaaacgcg gctttatcca gcccaatatc
     7861 tacaaaagcc gcctgcatac ccggaagtac acgacttaca cgacccttgt agatattgcc
     7921 tactattccg cgtcgcgcct cacgttcaat atgaatttcc tgcagaatac cgccatcaat
     7981 atacgccact cgcgtttccg aaggcgttac gtttactaac aattcagccg tcatgtttat
     8041 cccttttctc acgcagtgcg ttaaaattac ttaataattc atacgtttca accagcggta
     8101 agccgactac ggcgtgatag ctgccattta tcttcctgac aaaacagcca cccagcccct
     8161 gaataccgta tgcacctgct ttatctaacg gttcaccgct ggcgacatag cccgcgatgt
     8221 cttcgtctgt taacgttctg aaagtcacat cggtgaccac caggcaatcg agaatgtgct
     8281 ggctgtcggc caacaccact gccgtcatca cctgatgggt ctgacccgat aatttgcgca
     8341 acatctgcgc cgcatgctct gcgtcgcgcg gtttctccag cacttctcca ttcaggataa
     8401 cgatagtatc cgcacccagc accgggagat cctgcgccgt ttgcgcgaca cccgcctgtg
     8461 ctttcttgtg tgccagacgc acaacatact gctgcgcgct ctcctgcggc tgacgctgct
     8521 cctcaatgcc cgtaacaata cgttcaaagg tcacgccaag ttgcgcaagt aactcctgac
     8581 gacgcggaga accggaagct aaatacagag aagtcataga aacctttatt gcactgcaaa
     8641 ctgctgacgg actttacgca tcagcaagaa aatccacggc cagagcaccc cattgactac
     8701 actactccag aacacttccg gtctgaaaga gacgttaatc actaaaaact ctgcccagaa
     8761 aacaataata tccaccacca gcgaaagcaa catgacgact agcgcctgct gccataatgc
     8821 gaggttgcgg aaaagctggt atttcagcgc caccaggtaa gcaatgatgc tcatcgccaa
     8881 tacgcgtacg ccaagcgtcg agccgctgat cagatccagt atggcaccca tcacaaaacc
     8941 tgtgcccaca tttacgcgat ggggcaaggc caggatccaa tacaacaaga taagtaacac
     9001 ccagtttggc cggaaaacaa tcaggttatc cggccagggc atgatttgca gcaacagcgc
     9061 aatgaggaaa gagagccaga ttacccaacg tccctggcta cgatagctcg ccactattgc
     9121 cctcccggcg cacgcgcagg cggttgagca ccactttgcg gcggcgtagc cctttgtgga
     9181 gagcgattag cagcaggcgc agtagctgca tttcctgtcg tcggttgctg cggagtcggc
     9241 tgagcgatcc ccgttgtcgg ttcaggtaac tttggcccca tcgcgtctgg cgaaggcaat
     9301 acctgcggca tcatctgcat cagacgttca ttagcaacac gatgcacctc ttccggcgtc
     9361 atcgggttag cgccgttacg atccgcgccc cacagcagca gcagataacg caaacgttgc
     9421 agtcctgcag tcggacgcgc ctgaatcaca gtataagcgc gctgggtatc gagttttacg
     9481 gaagagacaa ccgcgaccgg atagccttcc gggaaacgac cgcccagacc ggaggtcacc
     9541 agcacatcac caacacgaat atccgtattc gctggcagat gctcaagctg caaatcatct
     9601 gtacaaccgt taccggctgc aattacgcgg atatcgttgc gcagcacctg gattggcagc
     9661 gcgtgggtcg catcacaaat cagcagcacg cgactggtca gtttagcgac ggccaccacc
     9721 tgaccaacaa cacctttgtc gctgatgacc ggctggcctt cataaacgcc attaacgcta
     9781 cctttatcga taacaacttg atcgctataa ggatcgttaa ccgtggagat aacctgagtc
     9841 accattttct gctcatcctg acgcagcggg gaacccagca gctcgcgcag acgcgcgttc
     9901 tcctgtttgt attgtccaag catcagcagt tcactgtttt tcagcaacag ttcctgacgt
     9961 aacgcccggt tttcaagttc tagttggtca cgcgaggcca gcgtctgcga tacgccatcc
    10021 agcaattcac gaggagcatt ggaaacaaag tagaaaggac tgacggcggt atccatataa
    10081 gtacggattt gactgaacgt ccccaggcgg ctgtcggcaa taataatgcc gagcgccacc
    10141 agcaccgcca gaataaggcg aatctgtagc gacgggccac ggctaaaaat tggcttcata
    10201 agttatgcgt attctcgtat cagaccaggc agggtaaaca gacatttccc ctgcctgcat
    10261 ccgattactc ttcgctgaac aggtcgccgc cgtgcatgtc gatcatttcc agcgctttgc
    10321 cgccaccgcg cgccacacag gtcagcgggt cttcagcaac aacgactgga atgccggttt
    10381 cttccattaa caaacggtca aggttacgca gcagtgcgcc accaccggtg agcaccatgc
    10441 cgcgctcgga gatgtcggaa gccagttccg gcgggcactg ttccagtgca accattaccg
    10501 cgctcacaat accggtcagc ggttcctgca gtgcttcgag gatttcgttg gagttcaggg
    10561 taaaaccgcg tggaacacct tctgccaggt tacggccacg aacttcgatt tcacggactt
    10621 catcgcccgg gtaagccgaa ccgatttcgt gcttgatacg ttctgcggtg gcttcaccga
    10681 tcagagaacc gtaattacga cgcacatagt tgatgatagc ttcgtcgaaa cgatcaccac
    10741 caatgcgcac ggaagaggag taaaccacgc cgttcaagga gataacagca acttcagtgg
    10801 taccaccacc gatatcaacc accatagaac cggtcgcttc agaaaccggc aggccagcac
    10861 caattgcggc agccatcggt tcttcaatca ggaagacttc acgggcacca gcgccctgcg
    10921 cggattcacg aattgcgcgg cgttcaacct gggtcgcgcc aaccggtaca caaaccagaa
    10981 cgcgcgggct tggacgcata aagttgttgc tgtgcacttg tttgatgaag tgctggagca
    11041 ttttttcagt cacgaagaag tcggcgataa cgccgtcttt cattgggcga atggcagcaa
    11101 tattgcccgg cgtacggccc agcatctgct tcgcgtcatg acctactgca gctacgcttt
    11161 tcggtgaacc ggcacgatcc tgacgaatgg ccaccacgga aggctcattc aatacgatgc
    11221 cttgtccttt tacataaatg agggtattcg cagtacccag gtcaatggac aagtcattgg
    11281 aaaacatgcc acgaaatttt ttcaacatac taagggataa tcctgaaagc tggggcggaa
    11341 aagaaaatcc gcttacttta ccaaccacac gcagcagcga caaggcgcaa aaatcatctg
    11401 ctacggtgaa aattagtgca gttcgtttcc tttgttacaa atctctgcct gagtccagaa
    11461 aggcttaatg catcagcagc attcctcgcc tgtttgcaac cgcgtaaggt cattcatctg
    11521 catatgtgct gcaacaatct ggcgagcaga caagcacact cccatgagac gcagcgcgcg
    11581 ttattctacg tgaaaacgga ttaaacggca ggttaaaccg agtatctttg tgaatatttt
    11641 ttcacgttag tatcaagtgg ctgtgaggac gcgaaaaaat ccccttgccc gcctgtaaca
    11701 ccgcgctgaa tcagggtctg ccactcgctt cgcgaacgca caccggtggc gtaaacctgg
    11761 gtgctggtcc cggagcaggc ttccaccagg ctttgaacca gcagctggtt ctccgttcgc
    11821 ttctcaatgt ttctgaccag ccccggatgg agcttgagta actcaacatt aagttctttg
    11881 atccaactgg tgcttaccag cgtcaaacca gcctggttga cggctacccg tacccctaaa
    11941 gcattcacta aacgaataac aggttgtaaa cgactgatat gttgacctac atcggcctct
    12001 gcaagttcaa taattatgcg ttttcgttgt gatttttcac attgcattaa cgtatcgcgc
    12061 agccaacgct gaaaacgcgg gcgaatcagc gactcaacgg taacctgaat cgccagattt
    12121 tcctctggcc agtaacgcaa tagtggaata agacggctga tttgcagacg gtcatactct
    12181 tccgataagc caaactgcaa gaccatcggc atatactccg ccgagctaac ctcttcatta
    12241 ccatcgaaga tgcggcacat gagttcgcga tgatgaacct gaccttcgcg agtaaccgcc
    12301 ggtttttgat aaaggcgcgg gccgccgcga ctgagcattt gctcgataag cgtacgccag
    12361 cgaacattac cgcgtccttt ttcaggcaac gagtcatcgt aaatagccca gctattgccg
    12421 ccctgcaatc ccgcattacg cgtggcagac tctgcatgtt ccattacctg ctcggtatcc
    12481 tgaccactac gccaggcgca gataccaatg tggatcatat cgtcgcgatc gagcatttta
    12541 ttgttcggca aggtatcgac ggctttgatt aactgaccgg cgatgctctc tgcctctttt
    12601 aacgtccggt gcggtaacag cgcagcaaaa tcactgcggt ggtaacgcgc cagcagtgcg
    12661 ccagggtagc gcatcataaa tgtcgacagc agattcgtca gagtgaagaa ctgttcttca
    12721 acctggctgt gcccccaagt atcgctcaac atattgaaat ccggcagacg aatcatcatc
    12781 acgatcccgt gggtacctac tttctcctga tcttccagta acgttgctaa ctgattatcg
    12841 aaaaagagtc ggttattgag gccggttttc acgtcctggg cggcataaga gcggatcagc
    12901 gtatcaagac ggctgtgttg ttcgcgtgcg ttctgaattt cacgaagcag cgtatccagc
    12961 gcactgctgg ttctgggcgg ccattcatag atggttccca acacattaga gccacgctca
    13021 ccgtttaaga tacgagtagc ccgggtttcc agcaattctt gcccggcaag ttgccgttgt
    13081 aaccagcgta ccgccaagaa gagcataaca atgataaagc taatcgcccc cgtgagcggc
    13141 gcggtggtca tcaacgaatg gaaatagttg cccatcggat cctgataaac cagacgcagc
    13201 gacatccccg gatactttat taacggaacg ctcagttcac gaaacagatc gctggagcca
    13261 accggacgat aactaccatt tctggccagg gtataaacct gtttatcacc atggagcagg
    13321 tctacacgaa cgatatctgc cgacatcatt aattcggtaa tttgtggcct taatgtgctg
    13381 aagtcattcg acacaaggtg ggtatcaatc gccgtcgcca ccgcctgaac gcgatgacta
    13441 aacttatact gaattgcgtt gtagaaactt agcgaacagc ccagcaaagt cacaaaaatt
    13501 gttaacccgg tgagcagcgt aacaaaggcc gaaaatttcg tcgttaatct catccttgtg
    13561 ttaactccga tagtgaggaa gcgggcatac tagcaaatca gatttatctc gcaatttatt
    13621 gcgcttcatc ggctttgctt ttccattagc gagtataatc ttcagaaatt attttccaat
    13681 ccatcatgca catgaggacc acttatgcag gcgttacttt tagaacagca ggacggcaaa
    13741 actctcgcat cagtacagac tctggacgaa agtcgcctgc cggagggcga tgtcatggtc
    13801 gatgttcact ggtcgagcct gaactataaa gatgcgctgg cgattaccgg taagggaaaa
    13861 atcatccgta attttccgat gattcctggg atcgattttg ccggaactgt acgcaccagc
    13921 gaagatccgc gttttcatgc cggtcaggag gtgttactca ctggctgggg cgttggtgaa
    13981 aaccactggg gtgggctggc ggagcaggcg cgagtgaaag gtgactggct ggttgccatg
    14041 ccgcaagggc tggacgcgcg taaagcaata attatcggta ctgccggttt taccgccatg
    14101 ctgtgtgtga tggcgctgga agatgccggt gttcgcccgc aggacgggga gattgtcgtg
    14161 acgggtgcca gtggtggcgt cggcagtacc gccgtggcgc tgctgcataa gttgggttat
    14221 caggtcgttg ccgtttccgg tcgcgaaagt acccatgaat atctgaaaag tttaggtgcc
    14281 agccgtattc tccctcgtga tgagtttgcc gaatcccgtc ctctggaaaa acaagtctgg
    14341 gctggggcaa ttgacactgt tggcgacaaa gtgctggcaa aagtgctggc gcaaatgaat
    14401 tacggcggct gcgtggcggc ctgtggtctg gcgggtggtt ttactctgcc aaccacggtc
    14461 atgccattta ttctgcgtaa tgtccgtttg caaggggtgg attcagtaat gacgccacca
    14521 gaacgccgcg cacaagcctg gcagcgactg gtcgccgatt taccggaatc attctatacc
    14581 caggcggcaa aagagatatc tctgtcagag gcaccgaact ttgccgaggc catcattaat
    14641 aaccagatcc agggtcgcac gctggtgaag gttaactaac catttagcaa ggaataataa
    14701 gagagggaac tcattttgac atcattattc aatcggttaa cgggaaaagc ggttagccgg
    14761 acagctttcg tcgaacacct tggtcaggaa gttgtacaac atcatccaaa ctggaaagtc
    14821 atgatttcga ctgaccacaa attgatgcgc attgatactc ctctaaacag ccattattga
    14881 tacgcctccg tcgcctgtta ggtttatggt gctttgcctg ggcgacacta cgcttaacct
    14941 gttactgatt tctggtacca tggggtgaat aatctgattt tatttgacta caaattaacc
    15001 actcgaacct atttaatgct gagaattgtc agtcggttga ttttgcgtgc tttagcattc
    15061 acatctatcc agacgatgca gtgaaaattg ggtaatcccc agcaaccgct gcgtaatgtc
    15121 gtctatcttg tcgcgatcct ggcatcccta cattatttgt ggtctgtgaa gattatctca
    15181 ttgcagcccc tcatcttcgc agggctggct ttacagcttt tcaccttacg ttataagaag
    15241 ttccgtcgat gatggcgcta atttcgtgaa ttgtgcggct tgttgcaaat tacacggtgt
    15301 tgaaggttat ttacatgtta gctgttgatt atcttccctg ataagaccag tatttagctg
    15361 ccaattgcta cgaaatcgtt ataatgtgcg acctcgtcct ccctgacgca gtttttgcgc
    15421 tgcggaaaag gtgacattgg cgcaacgaag gtatattttg ttttttgccg gaggatagca
    15481 gcagatcgct gcacaatgtc cgtcaagtct aacattgata ctctggggca aaatagaccg
    15541 gcgtcccggc ctgctggaat ttatcgctat gcatacagct gtcggggcat acgctttaca
    15601 gacggcggtg aaacgcctgt cacaatcaca ctaaacaaag agtacggaac ccactcatgg
    15661 atattcgtaa gattaaaaaa ctgatcgagc tggttgaaga atcaggcatc tccgaactgg
    15721 aaatttctga aggcgaagag tcagtacgca ttagccgtgc agctcctgcc gcaagtttcc
    15781 ctgtgatgca acaagcttac gctgcaccaa tgatgcagca gccagctcaa tctaacgcag
    15841 ccgctccggc gaccgttcct tccatggaag cgccagcagc agcggaaatc agtggtcaca
    15901 tcgtacgctc cccgatggtt ggtactttct accgcacccc aagcccggac gcaaaagcgt
    15961 tcatcgaagt gggtcagaaa gtcaacgtgg gcgataccct gtgcatcgtt gaagccatga
    16021 aaatgatgaa ccagatcgaa gcggacaaat ccggtaccgt gaaagcaatt ctggtcgaaa
    16081 gtggacaacc ggtagaattt gacgagccgc tggtcgtcat cgagtaacga ggcgaacatg
    16141 ctggataaaa ttgttattgc caaccgcggc gagattgcat tgcgtattct tcgtgcctgt
    16201 aaagaactgg gcatcaagac tgtcgctgtg cactccagcg cggatcgcga tctaaaacac
    16261 gtattactgg cagatgaaac ggtctgtatt ggccctgctc cgtcagtaaa aagttatctg
    16321 aacatcccgg caatcatcag cgccgctgaa atcaccggcg cagtagcaat ccatccgggt
    16381 tacggcttcc tctccgagaa cgccaacttt gccgagcagg ttgaacgctc cggctttatc
    16441 ttcattggcc cgaaagcaga aaccattcgc ctgatgggcg acaaagtatc cgcaatcgcg
    16501 gcgatgaaaa aagcgggcgt cccttgcgta ccgggttctg acggcccgct gggcgacgat
    16561 atggataaaa accgtgccat tgctaaacgc attggttatc cggtgattat caaagcctcc
    16621 ggcggcggtg gtggtcgcgg tatgcgcgta gtgcgcggcg acgctgaact ggcacaatcc
    16681 atctccatga cccgtgcgga agcgaaagct gctttcagca acgatatggt ttacatggag
    16741 aaatacctgg aaaatcctcg ccacgtcgag attcaggtac tggctgacgg tcagggcaac
    16801 gctatctatc tggcggaacg tgactgctcc atgcagcgcc gccaccagaa agtggtcgaa
    16861 gaagcaccag caccgggcat taccccggaa ctacgtcgct acatcggcga acgttgcgct
    16921 aaagcgtgtg ttgatatcgg ctatcgcggt gcaggtactt tcgagttcct gttcgaaaac
    16981 ggcgagttct atttcatcga aatgaacacc cgtattcagg tagaacaccc ggttacagaa
    17041 atgatcaccg gcgttgacct gatcaaagaa cagctgcgta tcgctgccgg tcaaccgctg
    17101 tcgatcaagc aagaagaagt tcacgttcgc ggccatgcgg tggaatgtcg tatcaacgcc
    17161 gaagatccga acaccttcct gccaagccca ggcaaaatca cccgtttcca cgcacctggc
    17221 ggttttggag tgcgttggga gtctcatatc tacgcgggct acaccgtacc gccgtactat
    17281 gactcaatga tcggtaagct gatttgctac ggtgaaaacc gtgacgtggc gattgctcgc
    17341 atgaagaatg cgctgcagga gctgatcatc gacggtatca aaaccaacgt tgatctgcag
    17401 atccgcatca tgaatgacga gaacttccag catggtggca ctaacatcca ctatctggag
    17461 aaaaaactcg gtcttcagga aaaataattt gtgacgcgcg gtgttttcat cgcgcttagc
    17521 aaagaacgta atcaacgccg ggcctgttaa cgctgcccgg cgtttttatt gccgttagct
    17581 aacggtagcc tgcaatttcc gctttcaacg cgctcatttc agcatcgcca tcaacaattc
    17641 ccagctcaaa gcagtatttc tttgtttccc ctggctcaat aaagggcaga cgcccctgcg
    17701 ctcgttcttt atcacgaccg tcaggaaaac tattactgac ctccagtccc ataacatact
    17761 cacccgcgcc taaatttttc cactggataa agttgggtag ctgcatggtg tcgaatttct
    17821 cgtaaattcc ccaccccagt tcggcgttca ccagagcaac tttactcatc ccctgactgt
    17881 cgctattcaa cgtgagatag taaacctgct cgtcaaaacc gggctgtggg gtacaaatct
    17941 ccagatgact ggttaaccct tccgccgcat gcggagttcg tggcgttacg cttttagccg
    18001 acagcaagat ttctggcctg tggcgataat aaaggccagc cgtaattaaa gtgataaaga
    18061 atttgcagcg gctggcgggt gaaaccatga ttagtcacct tgtcttcaat gcgcagcaca
    18121 ttttcgccat aacggcagcg aatggtcctt tccagcgtca gattttcgcc gaacagtcgc
    18181 gtttcccgta ctttgccatt gatgacaaat tcaatgccgt cgtcggtccg ttctgtgcga
    18241 taccccacct cttctgctgg agtcgcagcc aaacgcccgt gtaaccccag cgtttctcct
    18301 tcatcctcac aaggcgtgcc aatgtagcta agtccgcagg tagtcagtaa ccccgcgtaa
    18361 aagctacgta aaaatccgtt gccctgagac tcaaaaaaag cgggggcgac aatgccgttg
    18421 ggggtgataa aagaaagcgc cgtgtccttg tagctggccc atgcaatatc cagcgcgcga
    18481 tcttttacca ccgtaaatgc cagtcccgca ccagtacgga catcaaacgc ttctgtaccc
    18541 tttgctctgc cactacgtaa ctcatagtgt ttaattccgg caacctgcga gagatcgcca
    18601 atccacgacc aaatttcgtt tttcattgtg ctgcttcccg aatggacatg tcatggcgct
    18661 ggatgaacgc ttcgatttcc gcaaggcgag acgttccctc cattgggcca cgtctggtta
    18721 ccgccagcgc accgcaggca ttggcatatt gcagcgctcg atggacgtca aaccctagct
    18781 ggcggcaggc aatccacgcg ccaccaaagc agtctcccgc accggtcggg tcaacttctt
    18841 ccaccggata gctctcaaca tgaaactgct cattcgcgga gtagtaactg gcaccttgat
    18901 tgccgcgctt cacaatcacc tctttaacac cttcttcaag aaaacctgcg attgcacgct
    18961 ccggcgtcga atgtggcgac aagagcaaca cttcgccctc gctgggcata tagatatccg
    19021 ttaactcaag aacaaagtgg agggcgtcac gcatttctgg aatatcgagc atctctttac
    19081 gaatattagg gtcgaaagaa ataacaccac catttgcttt aacgatagtt accgcttttt
    19141 ttactgcgtc ataccatatg aaacgaaaac agggaagagc ccataatatg aaaatgggta
    19201 cagtccttca gaatattttc atcaacatgc tgcgccgata atttaccgca agcggcattc
    19261 ttaatattaa aaataaaatc gcgatcgcca gagttatgat aagtaacaaa ggcactcccg
    19321 gtagcttcct gaggtaagac tgaaatcccc ctgatatcca caccgtcagc agccagacga
    19381 tgtatattaa tatcaccaaa gccatcattc cccacacagc taatgatgcc gcacggaacg
    19441 ccaagacgtg tcacctggtc gataaaaata gcgggcgcac cactgggata agggccgttc
    19501 cagatacctg gttgatcaaa tggctggccg attttactcg ccataatttc aaccagaatt
    19561 tctccaattg tgaagacctt actcatatga ttaattcctt gaaatgatta gctgcgtttt
    19621 cttttatttc ttacgtcaaa ataaacggct acaagaatga ctaatccttt aaccaccatc
    19681 tggtaaaaat agggaacatt cattaagttc atgccattat taataacgcc gatagttaat
    19741 gcgccgatca ccgtccccac cacggttcca tagccgccgt tcaggctggt gcctcccagt
    19801 acagccgcag caatagcatc cagttcgtag ctcaacgcgg aattcggtta cccggaatag
    19861 aggcgtgagg cgaggatcat cccgctgata cctgccagca cggctgtaat cataaagact
    19921 ttaattttca agcgggtgac atttatccct gaataaattg ccgcttcttt attaccacca
    19981 gtgatataaa tttttcgtcc aaaggttgtt ttagtaagaa tgaagtggtt aatcagcaat
    20041 aagatgatta atatccagat tggaataggt atatagagaa attctccatt ccccagtgcc
    20101 agaaaggcat catctttaat catgatgggc ataccatcgg tcactatata agcgatacca
    20161 cggaagatcc ccatagtagc aacggtgaca ataaacgacg ggatccccgc tatagccgtc
    20221 aagccaccat ttatcatccc cagagccagt gctgcaataa tggataatgg gaccaataaa
    20281 ataaatggaa ttccccatga agccccaagc gcagcaaatg tgccaatcaa tgcaatggtt
    20341 gaaccgaccg ataaatcaat atcgccaagc aaaagtacat aagtcattcc ataggcggta
    20401 attgcaatta tcgaaacctg aagaataata ttagtaatgt tgttggcggt aaaaaaactg
    20461 tcattaataa aactgaacag aatgattaac accaccattc cactgaggat accgccatat
    20521 tgcctgaaga ctttttttaa attatttgca atgggaattt ccgaaggttt cggactggca
    20581 agagttttct ctgtcattta acgtactcct gttgcagcgg tcattacctg tgtctgcgtt
    20641 aaattttcac atgaataaat atcggcaatc gttttattac gcattaccac cagacgatcg
    20701 ctaagtgcca tgacttctgg cagttcagag gacaccagaa taattgctgt ccctgccgca
    20761 gccagttgac gtatcacgtt atagatttca aattttgcgc cgacatccac tccgcgcgtt
    20821 ggctcatcga gcaataaaat acgcggagtt ttctccagcc acttcgataa cacgattttc
    20881 tgttgattac cgccgctcag cgctcccact gcctgatgta cagaactcac tttagtgttc
    20941 attctggcaa ttgattgcag cgtcttcgcc tcttcttgtc ggtgattgat gagtcccatc
    21001 cgcgaagcgt tatattgaaa cgccacatgg tgcgtgttca tattgacgtc gtgcatcagc
    21061 actaaccctt cttccttgcg gttttcggtc acaaaagcaa tgccatgatc aatagcctgt
    21121 ttaggattag tgatcctgac ttccttacca tcaatcaaca cagtcccctg atacgaaacg
    21181 aggccaaaga gcgccttcat cacatcggaa cgcccggccc ccaccaggcc aaaaaatccg
    21241 aggacctccc ccggacgcac agcgaaactg atctctttaa aaagcgaagg atgggaaaga
    21301 ttttttactt ccagttttgc aggaacattt tcatccggta tttccccaag acgtgctggc
    21361 caaatatttt tcatttcccg accaaccatt tgggcaatca aatgctggat atcactgttt
    21421 ttcttttcat gcgtggcgat atactcaccg tcgcggatca ccgaaatatc atctgaaatc
    21481 cgcataattt catccatgcg atgagagata taaataaccg cacagcctcg ctgctttaat
    21541 ttttcaataa tgttaaacag aatctccgct tcattatcac ttagcgaaga tgtcggttca
    21601 tccataatca cgacatccgc tgcatagctt aaggctttag caatttctac cagttgccta
    21661 tgtgccatcg acatattgcc gaccatttct agtgggtcta gtggtatgcc ccgttccgcg
    21721 aggagattct ggcaatctgc gagcattttt ttatcgttaa taatgccaaa acgtcgcggt
    21781 tcattattgg cataaatatt ttccgccacg gtcatattat tactcaggct caattcctga
    21841 aaaataatcg caattcctaa ctggcgtgaa tgctgcggat tattaatggt gatagtttca
    21901 ccacgtagtg ttatcgttcc ctgggttggc ggataaacac cggccagtat tttcattaat
    21961 gtcgatttac cggcaccatt ctcgcctaat aaagtatgca cccgcccttt acgtaaagag
    22021 agggtaatat cttttaatgc ttgaacatga ccaaatgtct tcgcaatatg cgaaacatca
    22081 agaataacat ccgtcataat gacctcggtg tcacaacaaa acgccaataa cgttttgttg
    22141 tgaggtgaag atgtttacta tttacctgta taaacgccgg gttgtaccgg gatcattttt
    22201 tctaccggtt taccattgag gtgatcaaca gcggcatcaa tggctttagc acccatttga
    22261 tcgggatatt gccgaatcac ggccgcaaac gttttttcac tgtcaacggc atcacgcgct
    22321 tctttcatgc catcaaaacc aatgattttg atgttgtcgt tatgcgcaga ttttgctgcg
    22381 ataaccgctg ccagcgccgc atcatcacca aagccaaaca gaccattcag gttggcattt
    22441 gcctgcataa tgttttgcgc agtcgttaac gcttcagccc gcgtaatact aggctgttca
    22501 gcaacaattt taatatccgg tgtatcgctt aaccctttct taaaaccatc aacgcgcgca
    22561 accaccgatt gtagtgccgg ataagaaata ctggctacag tacctttacc attcaaaagt
    22621 ttgcccatta acttgcctgc ttcaacgcct cccgcatagt tatcggtcgc aacatgcgat
    22681 acgaccggaa cgccttccgc agcgacgtcg acggtgataa cgggaatacc ggccttatcg
    22741 gctttaatta tcgccgcctg gacgcctttc gaatcgaccg gagagataat aatggcatcc
    22801 acttttttag taataaaatc ctcaacatca gaaagttgtt tgtttaaatc ctgattggca
    22861 aataga
//
LOCUS       DAJVUP010000057        22777 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.057, whole genome shotgun sequence.
ACCESSION   DAJVUP010000057 DAJVUP010000000
VERSION     DAJVUP010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22777
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.057"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..454)
                     /locus_tag="OQQ75_001988"
     CDS             complement(<1..454)
                     /locus_tag="OQQ75_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000755097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1976329.1"
                     /translation="MKKVFAKSLLVAAMFSVAGSALAVQKDITVTANVDAALDMTQTD
                     NTALPKAVEMQYLPGQGLQSYQLMTKIWSNDVTKDVKMQLVSPAQLVQSLDASKIVPL
                     TVTWGGEEIKADAATTFTATKIFASDALTNGSLAKNLMFAQTTKGVLET"
     gene            complement(484..1200)
                     /locus_tag="OQQ75_001989"
                     /pseudo
     CDS             complement(484..1200)
                     /locus_tag="OQQ75_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225871.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
     gene            1496..2272
                     /gene="exuR"
                     /locus_tag="OQQ75_001990"
     CDS             1496..2272
                     /gene="exuR"
                     /locus_tag="OQQ75_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ExuR"
                     /protein_id="HCS1976330.1"
                     /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV
                     SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ
                     LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA
                     AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL
                     ENTKIMLFNETSDDFEFNADRYLFAENPVVHLDTATSGSK"
     gene            2617..3279
                     /locus_tag="OQQ75_001991"
     CDS             2617..3279
                     /locus_tag="OQQ75_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1976331.1"
                     /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP
                     AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW
                     LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
                     GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN
                     RG"
     gene            3283..3666
                     /gene="mzrA"
                     /locus_tag="OQQ75_001992"
     CDS             3283..3666
                     /gene="mzrA"
                     /locus_tag="OQQ75_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EnvZ/OmpR regulon moderator MzrA"
                     /protein_id="HCS1976332.1"
                     /translation="MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVH
                     QGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYI
                     IAQQDNNSQAMQWLTRLRDNSHRFG"
     gene            3813..4181
                     /locus_tag="OQQ75_001993"
     CDS             3813..4181
                     /locus_tag="OQQ75_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HCS1976333.1"
                     /translation="MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQ
                     NRIDGLNKALSEVRANCSDSQLRADHHKKIAKQKDEVAERQQDLAEAKQKGDADKIAK
                     RERKLAEAQEELKKLEARDY"
     gene            4219..4524
                     /locus_tag="OQQ75_001994"
     CDS             4219..4524
                     /locus_tag="OQQ75_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1976334.1"
                     /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE
                     QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR"
     gene            4527..4931
                     /locus_tag="OQQ75_001995"
     CDS             4527..4931
                     /locus_tag="OQQ75_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1976335.1"
                     /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK
                     ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW
                     TLRKSRKSTLLRHTRHELANDRQLLEEESREQ"
     gene            4921..5220
                     /locus_tag="OQQ75_001996"
     CDS             4921..5220
                     /locus_tag="OQQ75_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqjK-like family protein"
                     /protein_id="HCS1976336.1"
                     /translation="MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWN
                     MLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG"
     gene            5406..5798
                     /locus_tag="OQQ75_001997"
     CDS             5406..5798
                     /locus_tag="OQQ75_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008503138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS1976337.1"
                     /translation="MKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVP
                     GFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSKFAEGVNSLMFMKN
                     LTISGGFLLLAITGPGAYSIDRLLNKKW"
     gene            5868..6771
                     /locus_tag="OQQ75_001998"
                     /pseudo
     CDS             5868..6771
                     /locus_tag="OQQ75_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708909.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
     gene            7064..7429
                     /locus_tag="OQQ75_001999"
     CDS             7064..7429
                     /locus_tag="OQQ75_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1976338.1"
                     /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML
                     GWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN
                     CQAGTPGENRFGPDPKLEP"
     gene            7671..8027
                     /locus_tag="OQQ75_002000"
     CDS             7671..8027
                     /locus_tag="OQQ75_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1976339.1"
                     /translation="MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLIL
                     GLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGVWALLYLVPIIGWLVLFVFACLEG
                     NSGSNRYGNDPKFGSN"
     gene            complement(8078..8974)
                     /gene="yhaJ"
                     /locus_tag="OQQ75_002001"
     CDS             complement(8078..8974)
                     /gene="yhaJ"
                     /locus_tag="OQQ75_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YhaJ"
                     /protein_id="HCS1976340.1"
                     /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK
                     LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIV
                     TEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS
                     EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLD
                     KQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWR
                     RDSMGEAKSWCLREIPKLFSGK"
     gene            9079..9780
                     /locus_tag="OQQ75_002002"
     CDS             9079..9780
                     /locus_tag="OQQ75_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HCS1976341.1"
                     /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN
                     QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS
                     EHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVW
                     LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL
                     VADSPLRALLIDLPV"
     gene            9803..9967
                     /locus_tag="OQQ75_002003"
     CDS             9803..9967
                     /locus_tag="OQQ75_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312016.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976342.1"
                     /translation="MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAE
                     TRLAEDEATA"
     gene            complement(10101..11411)
                     /locus_tag="OQQ75_002004"
     CDS             complement(10101..11411)
                     /locus_tag="OQQ75_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HCS1976343.1"
                     /translation="MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAEL
                     EGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQ
                     AIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNS
                     VVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEG
                     LSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQ
                     GITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAA
                     GMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT
                     AVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR"
     gene            complement(11439..12771)
                     /locus_tag="OQQ75_002005"
                     /pseudo
     CDS             complement(11439..12771)
                     /locus_tag="OQQ75_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026203.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
     gene            complement(13045..14409)
                     /gene="tdcG"
                     /locus_tag="OQQ75_002006"
     CDS             complement(13045..14409)
                     /gene="tdcG"
                     /locus_tag="OQQ75_002006"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1976344.1"
                     /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH
                     IVVDLYGALSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA
                     HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLS
                     HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD
                     GIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG
                     AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC
                     IERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK
                     VVCG"
     gene            complement(14481..14870)
                     /locus_tag="OQQ75_002007"
     CDS             complement(14481..14870)
                     /locus_tag="OQQ75_002007"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enamine/imine deaminase"
                     /protein_id="HCS1976345.1"
                     /translation="MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPA
                     DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY
                     PTRSCVQVARLPKDVKLEIEAIAVRSA"
     gene            complement(14884..17178)
                     /gene="tdcE"
                     /locus_tag="OQQ75_002008"
     CDS             complement(14884..17178)
                     /gene="tdcE"
                     /locus_tag="OQQ75_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-ketobutyrate formate-lyase/pyruvate
                     formate-lyase"
                     /protein_id="HCS1976346.1"
                     /translation="MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGD
                     ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV
                     GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD
                     MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL
                     EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG
                     GAMSLGRTASFLDIYIERDFEAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG
                     DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA
                     AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA
                     INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK
                     YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG
                     EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT
                     PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE
                     DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNIMNREMLLDAIEHPEKYPNLTIRVSGY
                     AVRFNALTREQQQDVISRTFTQAL"
     gene            complement(17212..18420)
                     /gene="tdcD"
                     /locus_tag="OQQ75_002009"
     CDS             complement(17212..18420)
                     /gene="tdcD"
                     /locus_tag="OQQ75_002009"
                     /EC_number="2.7.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate kinase"
                     /protein_id="HCS1976347.1"
                     /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF
                     LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITD
                     EVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP
                     WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS
                     VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS
                     SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI
                     RRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHL
                     GKVNAPAEFA"
     gene            complement(18446..19777)
                     /gene="tdcC"
                     /locus_tag="OQQ75_002010"
     CDS             complement(18446..19777)
                     /gene="tdcC"
                     /locus_tag="OQQ75_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine transporter TdcC"
                     /protein_id="HCS1976348.1"
                     /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA
                     GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF
                     LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM
                     VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM
                     VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF
                     TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH
                     YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM
                     GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF"
     gene            complement(19799..20788)
                     /gene="tdcB"
                     /locus_tag="OQQ75_002011"
     CDS             complement(19799..20788)
                     /gene="tdcB"
                     /locus_tag="OQQ75_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HCS1976349.1"
                     /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI
                     FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK
                     VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA
                     GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA
                     SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR
                     NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA"
     gene            complement(20887..21825)
                     /gene="tdcA"
                     /locus_tag="OQQ75_002012"
     CDS             complement(20887..21825)
                     /gene="tdcA"
                     /locus_tag="OQQ75_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TdcA"
                     /protein_id="HCS1976350.1"
                     /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND
                     IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG
                     FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL
                     QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG
                     ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV
                     WSKNYRIKKAASVLVELAKEYSSYNGCRRRLLIEVG"
     gene            22014..22358
                     /gene="tdcR"
                     /locus_tag="OQQ75_002013"
     CDS             22014..22358
                     /gene="tdcR"
                     /locus_tag="OQQ75_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TdcR"
                     /protein_id="HCS1976351.1"
                     /translation="MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMS
                     KFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSS
                     DRTSFCECNRFP"
BASE COUNT         5972 a         5763 c         5308 g         5734 t
ORIGIN      
        1 ctgtctccag aacacctttg gtggtttgag caaacatcag gtttttagcc agagaaccgt
       61 tagttaacgc atcggaagca aagattttgg ttgcggtaaa agtggttgcc gcatcagctt
      121 taatttcttc accgccccag gttactgtca gcggaacaat cttgctagca tccaggcttt
      181 gaaccagttg cgccggggaa actaactgca tttttacatc tttggtaacg tcgttagacc
      241 agattttggt catcaactgg taagattgca gaccctgccc cggcagatat tgcatttcta
      301 ctgctttcgg caacgcggtg ttatcggtct gtgtcatatc cagagcggca tcaacgttgg
      361 ccgttacagt aatatccttt tgtactgcca atgcggagcc tgcaacagaa aacatcgctg
      421 cgaccagaag agattttgca aatacctttt tcattactat tccttcgttt attacaatga
      481 taattaatgg accgccagtt caaactcgcc attatctttg gtgatccagt tattatattt
      541 gacaacgatt ttgtcgtagc cagatatgct ttcaagattt ctttcctgac cagggaagat
      601 gtttttattt acggtctgta tcttacaatt ttctttgcta ttatttttac aataagcgat
      661 cgttaaaatc tttaagcgtt gattccctgc attaactaat ttttgggcag catttacttc
      721 taacttagca ataggttgct gaggtggaac actaacaaca atcccccaaa ttaagctaac
      781 agttaactgc atagagaaat cttttttatc tgtggcaacg tcatcaatac tgggaaccgc
      841 ttcaaattta acgcgttaat ttttttcttt ttgctctggt tccattgcaa caaagcgcac
      901 agttttgcta ctaccggctg gtaaagcgaa tttaggtggc ataacaacca gatgatttgc
      961 atcaccggat ttaatctcaa cttcattttc ctgaggcgtc gatggattat cgatacggaa
     1021 tactgtcgcc ttgatgtact gaacttcatt acttttagat attacgcgaa cgttgccttc
     1081 atcctgacta ttaatggaaa cagccatagg ataaacagtc atatttgact gtgccaaaaa
     1141 aggagcgaac acgaataaaa gcggcgcaag ccgtgataag agattaattt tcgccaccat
     1201 ataaatttga tcttacaata ttgtttccaa aaagttggtg tattagagat gtagatttat
     1261 tgtaagtcaa tataaaaaag catttttagt taatattaaa tttaaaggct gggaattaac
     1321 ttgctgaaat ttagtagctt tcacaatgac gatacttatt ttttaggaat ttataaatat
     1381 tcacaatatt aattcaatac attaattcaa tcaccaaatt tatatatgac caatggcata
     1441 cccatgaata aagtggtatg ataacttcgt ccgcattcca ctccgggaga cgcatatgga
     1501 aatcactgaa ccacgccgtt tgtatcaaca acttgccgct gacctgaaag agcgcattga
     1561 acagggcgtc tatctggtgg gtgataaact gcctgccgaa cgctttattg ccgatgaaaa
     1621 gaacgtcagc cgaacggtag ttcgtgaagc catcatcatg ctggaagttg aaggctatgt
     1681 ggaggtgcgt aaaggttcag gtattcatgt ggtttccaac cagccgcgcc atcagcaggc
     1741 ggctgacaat aatatggaat tcgccaatta cggtccgttt gagttgcttc aggctcgcca
     1801 gctcatcgaa agtaatattg ccgagttcgc ggcaactcag gtaacgaaac aagacatcat
     1861 gaaactgatg gccattcagg aacaggcgcg cggcgaacaa tgcttccgtg attccgagtg
     1921 ggatttacag ttccacattc aggtagccct ggcgacgcag aactccgccc tggcggccat
     1981 cgttgaaaaa atgtggaccc agcgtagcca taacccgtac tggaaaaaac tacacgaaca
     2041 cattgattcc cgtaccgttg ataactggtg tgatgaccac gatcaaattc tcaaggcgtt
     2101 aattcgcaaa gatccccatg ctgctaagct ggcaatgtgg cagcatctgg aaaacaccaa
     2161 aatcatgtta tttaacgaaa ccagcgacga tttcgagttc aatgccgacc gctatctatt
     2221 cgccgaaaac ccggtagtgc atctcgatac ggccaccagt ggcagtaaat gaaactcctg
     2281 tccgacaggc gctgcgacgc gcctgttcgc ttcgtcggta agcgaaaagt ataaagtgtc
     2341 agcctgtgta aatcctctcg ccaccctccc ctgcattcag caaaatcaga ctccacggac
     2401 atgtaatttt gataacgaac aacgttgacc tttgttacaa ttagattcaa tttgaattta
     2461 tgtttttgaa tgctttctta tctcacgatt taacagggaa tagttcaggc tgtgttgatg
     2521 tatcaaaccc gcagaacata ccaaaacagc aataacattg cggtagtgca tcttttaaaa
     2581 ccagcgtggc gttaaccgat tcaccaggaa taatgaatgg aacttttgac ccaattgctg
     2641 caagccctgt gggcgcagga ttttgaaacc ctggccaatc catcgatgat tggcatgttg
     2701 tattttgtct tgtttgtaat tttgttcctt gaaaacggct tgcttccagc ggccttttta
     2761 ccgggcgaca gtttactggt attggtcggc gtgttgattg cgaaaggcgc gatgggttac
     2821 ccgcaaacga ttctgctgct gaccgttgcc gccagcctcg gctgctgggt cagctatatt
     2881 caggggcgat ggctgggcaa tacccgcacc gtacaaaact ggctatctca tttacccgcg
     2941 cattatcatc aacgcgcaca ccatcttttt cataaacacg gtttatcggc gctgttaatt
     3001 ggtcgcttta ttgcgtttgt cagaacactg ctgccgacga ttgccgggtt atcagggctg
     3061 aataacgcgc gctttcagtt tttcaactgg atgagcggtc tgctgtgggt attgatcctg
     3121 acaactctgg gttacatgct cggcaaaacg ccggtatttt taaagtacga ggaccagctg
     3181 atgtcatgcc tgatgctgct cccggtggtg ctgctggtgt ttggcctggc aggttctctg
     3241 gtcgtgttat ggaaaaagaa atatggaaat cgggggtaag ggatgcaaat acctcgcatg
     3301 tcgcttcgcc agctagcctg gtccggcact gttttacttc tggtcggcac gctgttgctg
     3361 gcctggtccg cggttcgcca gcaagagtct acgctggcga ttcgtgccgt tcatcaaggc
     3421 acaacgatgc cagacggttt ttcgatctgg catcaccttg acgctcatgg cattcctttc
     3481 aaaagtatca cccccaaaaa cgacactctg ttaattacat ttgactccag cgaccagagc
     3541 gccgccgcaa aagcggtcct cgacagaaca ttgccccatg gctacatcat tgcgcagcag
     3601 gacaataaca gtcaggctat gcagtggctg acccggttac gggataactc tcatcgcttc
     3661 ggataacttc ctgttatccg aaacatatca ctcactttgg tgatttcacc gtaactgtct
     3721 atgattaatg aggcggtggt taacactacc gcttcgttgt ctggacaatc gttcctttgt
     3781 aacaggtccg aatcacaatg gaaggttcaa gaatgaaata ccgcatcgct ttagctgttt
     3841 ctctctttgc tcttagtgcc ggtagttatg ccactaccct gtgtcaggaa aaggagcaaa
     3901 atatccttaa ggagatcagc tatgccgaaa aacaccaaaa ccagaatcgt attgacggtc
     3961 tgaataaagc cctgagtgaa gtccgggcca actgttcaga tagccagctg cgtgccgatc
     4021 atcacaagaa aatcgcaaag cagaaagatg aggtggcgga acgccagcaa gatttagccg
     4081 aggcgaagca aaaaggcgat gccgataaga ttgccaaacg cgaacggaaa ctggcagaag
     4141 cgcaggaaga gctgaaaaag ctggaagcgc gcgactacta actcacaata gtcactactt
     4201 actcacctgg agaaaactat gtcaaaagaa cacactacgg aacatctgcg tgctgagttg
     4261 aaatcccttt ccgatacgct ggaagaggtg cttagctcat ctggcgagaa gtcgaaagaa
     4321 gagttgagta agattcgtag caaagcggag caggcactga aacagagccg ttatcgcctg
     4381 ggtgaaaccg gtgatgccat cgccaaacaa acccgtgtcg cggcggcgcg tgctgatgag
     4441 tatgtgcgtg aaaatccgtg gaccggcgtg ggaattggcg ctgcaatcgg tgtagtgctc
     4501 ggcgttctgc tgtcgcgtcg ttaattatgg cggacactca tcacgcgcaa gggcccggta
     4561 aaagcgttct gggcatcggg cagcgaattg tttccatcat ggttgaaatg gtggaaacac
     4621 gtctgcggct ggcggtggtg gagctggaag aggaaaaagc taatctcttt caacttttac
     4681 tgatgctggg cctgacgatg cttttcgctg catttggtct tatgagcctg atggtgctaa
     4741 ttatttgggc ggttgatccg caatatcgcc tgaatgcgat gattgccacc accgtggtgt
     4801 tgctgctact ggcactgatt ggcggtatct ggacgttacg taaatcgcgt aaatccacct
     4861 tgctgcgcca tacacgccat gagctggcaa acgatcggca actgctcgag gaggagtccc
     4921 gtgagcagta aagtcgaacg tgaacgacgt aaggcgcaac tgcttagcca gatccagcaa
     4981 caacggctgg atctttccgc cagtcgtcgt gaatggctgg aggcaacagg cgcttacgat
     5041 cgtcgctgga atatgctgct aagtctgcgc tcctgggcgc tggttggcag tagcgtgatg
     5101 gcgatctgga cgattcgcca tcctaatatg ctggtccgct gggccagacg cggttttggc
     5161 gtatggagcg cctggcgtct ggttaaaacg accctcaagc agcaacagct tcgcggttaa
     5221 cttccctctg gccggagcca ttccggccct atccctcaaa ttttttgaag atttttgaca
     5281 gttttccttg ctaacaatca tcattcacca cgtttatgat tctctccatc gacagcaacg
     5341 acgctaatac cgcgcccttg cacaaaaaaa caatcagcag cctgagtggc gcagtggaga
     5401 gtatgatgaa aaaattagaa gatgttggtg tactggtagc gcgcatttta atgccgattc
     5461 tgtttattac cgcaggctgg ggaaaaatca ccgcttactc tggtacccaa caatatatgg
     5521 aagcaatggg tgtcccgggt tttatgctgc cgctggtgat tctgctcgag ttcggtggtg
     5581 gtctggcaat cctgttcggt ttcctgactc gcaccacagc cctgtttact gcgggcttta
     5641 cgctgctgac ggcattttta tttcacagca agtttgctga aggcgtcaac tcgctgatgt
     5701 tcatgaaaaa cctgacaatt tctggcggat tcctgctgct ggcaattacc ggtccgggcg
     5761 cgtatagcat cgaccgcctg ctgaataaaa agtggtaagc acgcgctata cttaacgata
     5821 aaaaacgagg aggaagctcc tcgtttttgc tattggagga gagaaaaatg gggcaactga
     5881 ttgacggcgt ctggcatgac acctggcccc actggcacag gcggttttat cgcagagaaa
     5941 gatcgttatc atctctatgt ttcactcgcc tgcccgtggg cgcaccgcac gctgatcatg
     6001 cgcaaactca aaggactgga accgtttatt tccgtttccg tagtgaaccc gctgatgctg
     6061 gaaaacggct ggacctttga tgacagtttt ccgggagcaa ccggagatac gctctatcaa
     6121 catgaatttc tgtatcagct ttatctccac gccgatccac actacagcgg acgagttact
     6181 gttcccgtgc tgtgggacaa aaagaaccac accattgtca gcaacgaatc agcagaaatc
     6241 atccgcatgt tcaataccgc gtttgatgcg ctgggcgcaa aagcgggtga ttactaccca
     6301 ccagccctgc aaacgaaaat tgacgaactt aacggctgga tttatgacac cgttaacaac
     6361 ggcgtgtata aagctggttt tgccaccagc cagcaagcct acgacgaggc ggtggcgaaa
     6421 gtgtttgaat cgctggcgcg actggagcag attttaggcc agcatcgtta cctgaccggc
     6481 aaccagctaa ccgaagccga tattcgcctg tggactacgc tggtgcgttt tgatccagtg
     6541 tatgtgaccc acttcaagtg tgataagcac cgcatcagcg attacctgaa tctgtatggc
     6601 ttcctgcgcg atatctacca gatgccgggg atcgccgaaa ctgtcaattt cgatcacatc
     6661 cgtaatcatt acttccgcag ccataagacc atcaacccta cggggattat ttcaattggt
     6721 ccgtggcagg atctcgatga accgcatgga cgagatgttc gcttcggtta aaaaaaggca
     6781 ccttacgagg tgcctctgat aattagctaa gtgcatgttg ttcatgtcgg atgcggcgtg
     6841 aacgccttat caaacctaca aaacgtttat attcaatatg ttaaaatgac cgcgtaggcc
     6901 agataagcgt agcgcatctg gcgattttgc gcttgtcatc agtcttagcg caccttcacg
     6961 gcactttatt aattccttga acgaatattt actgccattt cattcacgtc tattcttaat
     7021 ttgctgcttt aaaaacaagt gattgagcaa aattgaggca aaaatggact ggtatctgaa
     7081 agtactaaaa aattatgtcg gtttccgggg tcgtgcgcgg cgcaaagagt actggatgtt
     7141 tattctggtc aacatcatct ttacgttcgt gctggggctg ctggataaaa tgttaggctg
     7201 gcaacgcgcc ggtggcgaag gcatcctgac gacaatctac ggtattctgg tgtttttacc
     7261 gtggtgggcg gttcagttcc gccgcctgca cgacaccgac cgctcggcgt ggtgggcact
     7321 gttgttctta atcccgttta tcggctggct tattatcatc gtctttaact gccaggcggg
     7381 tacgccaggc gaaaaccgct ttggaccaga tccgaaactg gaaccttaaa acaaatctgc
     7441 tcgccggatg tctgactcat ccggctttta tcatcatgtt gatgaatgaa taatttacta
     7501 atgtttattt aaaatatttc aatgtcgtta tataaattac ctataaaaaa caaccatgta
     7561 tttatcttaa atatcaaaac ctttataaca tccgaaaaag aaagatacga atagcattta
     7621 cacaataccc ggaatagact ttcgtcactt ttaattaaag ggatgttttt atgcagtggt
     7681 atttagccgt attaaaaaat tatgttggtt tctctggtcg cgcacgtcgt aaagagtact
     7741 ggatgtttac tctgattaac gccatcgtcg gcgctattat caatgtcatt caattgattt
     7801 taggtttaga gtttccattc ctttctctca tttacctggc agcaacaatc attccggtca
     7861 ttgctctgtg tgttcgtcgt ctgcacgata ctgaccgttc aggtgtgtgg gcgcttctct
     7921 atctggtacc gatcattggc tggttagttc tgtttgtatt tgcctgttta gaaggcaatt
     7981 ctggcagcaa tcgttacgga aacgatccta agtttggttc aaattaatct tagaattggg
     8041 gcgatatttc gccccttttt attaacaata ataaatatta ttttccgcta aaaagtttgg
     8101 gaatttcccg cagacaccag gatttcgctt cccccatact gtcacgacgc caggccataa
     8161 taatatcgat ctcgctggtc gattccgggc tgacgacacg caaccgccct tccgcaatat
     8221 ctttttcgac catcggatac ggcatcgtcg ccacgccaag ccccgccagt aatgcctgac
     8281 gtttatcttc aatcgtgctc accgttaagc gcggctgttt gtccagcagc tgtacggtca
     8341 acaccgggcg ctcacgagcg gtatccgcta ccgcaattcc acgatatttc acgcgcgtca
     8401 cttcagataa cggttccggc tcctgatgaa tcgggtgatc aggcgcggca acgtagacgt
     8461 tcattaaggt atagagcttg cgcgagttga tctccgacga ggaacgaaaa tgcatatccg
     8521 gcgcgataac gatatccgcc cgcccctgct ccagtcgttc ccacgccccc gccagcactt
     8581 cggtgatgat tgccagttgg gtattggctt ttgccgccag tttgtcgatt aacgggaaaa
     8641 aggcaggtgt cggtaccagc gcctcggtca caatggtgag atgcgtttcc caaccgcgcg
     8701 cgagggcttc cgcatcggta gtcagtttat ctgctgcttc cagcaaaacg cgccctcgct
     8761 ccagcaacat cctcccgaca ttggtgaatt tggtgcgatg gcccgagcgg tcaaacagca
     8821 ccacatccag ctcttcttcc agtttttgca tggtgtagct aagtgcggaa ggcacgcgtc
     8881 ccagctcatc cgccgccgcc gcaaaactgc cccggcgatc gatcgcatcc ataacccgta
     8941 gtgcttccag cgttaatgcc ctttctttgg ccatttcgtt ctcattcagg aaatttgaac
     9001 ataccgggca gaatatctgg ctaacaatgt agcgtccagc cccttaccat aaaaggaagt
     9061 aaagagaggt caagaattat gattactacc cgaactgcca ggcagtgtgg acaagcagac
     9121 tacggatggt tgcaggcccg gtatactttt tcctttggac actacttcga cccgaaattg
     9181 ttaggctatg cctccctgcg tgtgcttaac caggaagtgc tggccccagg tgccgccttt
     9241 cagccgcgaa cctatcccaa agtcgatatt ttaaatgtga ttctggatgg agaagcagag
     9301 tatcgcgaca gcgaaggcaa tcatgttcag gccagcgccg gtgaggcgtt gctgctctct
     9361 acccagccgg gtgtcagcta cagcgaacac aatctcagca aagacaaacc gttaacacga
     9421 atgcagcttt ggctggacgc ctgcccgcag cgagagaatc cgctgattca aaaactggcg
     9481 cttaatatgg gcaagcagca attaatcgcc tcgccagagg gtacgatggg aagcctgcaa
     9541 ttacgccagc aagtgtggct gcaccatatc gtgctcgaca aaggcgaaag tgcgaatttc
     9601 cagttgcatg ggccacgcgc gtatttgcaa tcgattcacg ggaaatttca tgcgcttacg
     9661 catcatgaag agaaagcggc gctgacctgc ggtgatgggg cgtttattcg tgacgaggct
     9721 aacattacgc tggttgccga ttccccactg cgcgctttgc tgatagattt gcctgtctag
     9781 ttgtttttac agggagatga tgatgagtaa aaaatcggcc aaaaagcgcc agccagtgaa
     9841 gcccgtggtg gcgaaagaac ctgctcgcac cgccaaaaat tttggctatg aagagatgtt
     9901 gagcgagctg gaagccatcg tcgcggatgc tgaaacgcgt ttagccgagg atgaagctac
     9961 cgcgtaaaga caggttgccg gatgcggcga aaacgcctta tccggcctac aaaatccaac
    10021 aacattaacg aattaaacaa cccgtaggcc ggataaggtg cgccagcatc gcatccggca
    10081 caatactcaa aacctggcgt ttatctggcc ttgctcgcca taatctcgat aatctgccga
    10141 tccgtttgct gcatcgaatg gcttgctaac gcacacaggt tggcaatcga ctgctcaaca
    10201 tcatgcgcca cgatcccttc attgccggtc acggcggtat catccagcgc cattaacacc
    10261 gctttccacg cagccgaagc actggtcgaa accttcatcg cgcagctgtt cgacgcacca
    10321 tcgcaaatca tgccgctgac atcgccgatc atactgctga tcgccatcga gatagtttca
    10381 taacgcccat ccaccagcca tgccatccca gcggcggccc ccattgctgc ggtcgttgcg
    10441 gcacaaagtg cagacaaacg cggtaactgg ttatggatgt aaattgcgct caaatgagaa
    10501 agcatcagcg cacgcgccag tcgttcatca tccgctccga agtgttctgc tacaaccacc
    10561 acaggcattg ttgcggtgat cccctggtta cccgagccgg agttactcat agccggaagc
    10621 gtagcgccgc ccatacgcgc atcggatgcc gcgctggtac gaatcacaat ggatgaagag
    10681 agatctttcg ccagcaaacc gcgctcgcac tgtttttcca gcgtcgcgcc aatatgcagc
    10741 ccccacttac cgctcaaacc ttcctgcgat aacgcacaat ttagcttcgc ggaatcgaga
    10801 ataaagcgga tcgccgcaaa cgggacttca ttgacgaact tcaggatctc agccagcgtc
    10861 gttctggaaa gcaccgtcag cggagactct tgctcgccct ctgccacaca cgcctgctgg
    10921 gtaaacacca cactattgtg cgtctcaata tgcacaatgt tggtatgccc gccgacgatg
    10981 gtgacacacg cccacttctc accgttccag actttggcgc gtgagaagag gatttcattg
    11041 caaggttcct ggatcttaac ggagactttc cccgccgcca gcagtgcttt ggcatcggca
    11101 attgcctgcg cagttgcgtc tttcagcact tccagcccgg cgttggcatt tccacctaac
    11161 gcccccagcg ccgccgcaat cggcagcccc accattcccg tgccgggaac ggtgacgccc
    11221 agaccgttct tcatcagatt tggcgaaacc caggcttcta cacgttcaac cggaccttcc
    11281 agttctgccg cagcaaccgc cgccgccagc gccagtgaaa tcggttcagt acatcccagc
    11341 gccggtttta cttcctcctg aacggcgagg atgtaacgct gccataacgg atttaaagtc
    11401 gaatcaaaca tattaaaaac cttaaaattt caggtaaatc aagaaaatgc caggaacgga
    11461 gaaacacaaa gcaacaaacc agtgacgata atcaggtaca gagacatccc tttgtatttg
    11521 tgcaatgccg gtactttgta aaccagccac gccgggatca ggcaccctac catgccgaaa
    11581 atcgggctac agatagaggt gaagctcaac accggtgcgt tcagtacgat ggcgctccag
    11641 gccagcaaaa tggcgaaaat catgatgccg cgctgaacaa gattttcgtt aatcttctcg
    11701 gcaggcatct tgcgacgcag gatgttcatt acgatccctt gcgttgcttc gcgaaagcct
    11761 aaatagacgc caaagaatgc agtcatgaca gcaaagatat tgagaatgac gctgaccact
    11821 ttcacccacg ctgcgccgtc accgctaata aactgtgcgg caatcgccag cgcggaaata
    11881 ttctgctcgt aggcttttac cgcttcgtca tgtcccatcg ccagcgtgaa cgacacggcg
    11941 tagaaaaaga cggtgacaaa taaaatgcca aacgcgatat tcattgcccg caatgcttta
    12001 tgccgcgcca cttcaattga tttttcccgc gagcgataag agatcaccat cgggcttaac
    12061 gtctggataa acagaatcga cgtcagggta aacggcagcg taataatggc gtttttcacc
    12121 agcagcccca gcggcggtag cgaaccgacg ttatacagat gccacattcc caccatcgac
    12181 acgcccagcg cagcgactac cagcagcttg gtcagcacca tgccggtcga aattttgaat
    12241 aacaatttct cgccgcgtga agagatcgcc accagaatgc aaatcagtac cagaccataa
    12301 aagggactgt ctgacagcac cccttccgtc acgccgaagg tatgcagata ggaagcacta
    12361 tcgttggtga tggcggtgga atagacgaac atccaaatca ccagcattac gaaatagagc
    12421 gcacctaaca ggatgcccca gtttttacct aaataaccgc taatgacact cgggtaatct
    12481 ttacattctg tgtgattctg ccagcgtatt aataaacaac cgctgaaaca gatacattgc
    12541 cgggtaacca atcaccgatg agagcaaaaa tacccacaat cccatcaaac cgacctgcac
    12601 cgggagaaaa acaatccccg cgccaatcgc catcccgata ctcataatca cccagccggt
    12661 gtcagtactg tcgaatttga tcgcttctcg ccactcgctc tcactcattc cagcacgacc
    12721 cgccggggtc gaagcgtctg caatgacgcc tttattcgat gcaatttcca taatttctcg
    12781 ctcaatattt tgtagggctt attatttttt tccgagccgc atcaaggcga tatgcggtct
    12841 acgtttttgc aggcgagtta ttagaataaa gaaatgatac gcgcgaggtc agagaaaatc
    12901 ttcacaatca agactttgaa ataacggaga tggataagaa ttttctacta aattaatcgc
    12961 aagagaatat tcattctcta tttgcggcag atcacaaaaa aaggtgcaca tttgtgcacc
    13021 caaggatgaa agctgacagc aatgtcagcc gcagaccact ttaatggcca gtcctccgcg
    13081 tgatgtttcg cggtatttat cgttcatatc tttgccggtt tcatacatcg tctcgatcac
    13141 tttatcgagt gaaacacgcg gtgccgaggt gcggcgcatc gccatccgcg cggcgtttac
    13201 tgctttcacg gcattaatgg cattacgttc aatgcacggg atttgtacct gtccggcaac
    13261 cggatcgcag gtcagcccaa ggttatgctc catcgcgatt tccgccgcat tgcatacctg
    13321 cgccggactg ccgcccagta gttcagttaa ccctgccgcc gccattgaac aggccacgcc
    13381 aatctccccc tgacagccga cctccgcgcc agagatggag gcgttcattt tatacagcgc
    13441 gccaatagcc cccgctgcca gaaaatagcg ggcaattgac cgctcgttta ccggacgacg
    13501 gaacttatcg taataagcca gcactgccgg aataatgccg cacgcaccgt tagtcggtgc
    13561 cgttaccacg cgcccgccag ctgcgttttc ttcactaacc gccagcgcgt acatgttgat
    13621 ccagtcgatg acattcatcg gatcgttaga gatgttatcg ctagaaacca gctgacgacg
    13681 cagcgctacg gcacgacgcg gcacattgag cggaccaggc agcacgcctt cagtgttcat
    13741 cccgcgttca ataccgtcat gcatcacttg ccagatacgg gcaaaccctg cgtcaatttc
    13801 cgctttgctg cgcagcgcca gctcgttgtg catcatcagg ccagatatag acaggccgtt
    13861 gtaatcacac attttcagca gttcacctgc tgagtggaaa tcgtaaggta cggacgtttc
    13921 gacatcgtgc gacaggccga agtgttcttc ttcgacaata aacccgccgc cgacagagta
    13981 ataggtttta cttaatagcg cttcctgtcc cttccaggca gtgatccgca ttccgttctc
    14041 atggcgaggc aacatttcgg gatggaagat aatgttcttt gctacaggaa aatcaacaat
    14101 atgcgcacca gatgccactg gcagccgccc gctgcgcgtt actaactcta taaatgcagg
    14161 gatctcatca atgacaacat cctgcggact gtttcctgcc agtcccatga taatggcgac
    14221 atccgtggca tggcctttgc ccgtcagtga caacgcccca tacagatcga ccacaatatg
    14281 gctcgtcgcg gttaataagc cgctactttc cagccgatca ataaaacttt ttccggcatt
    14341 cattggcccc acggtatgcg aactggaggg accaatccca attttgaaaa tatcgaatgc
    14401 actaatcata tccacaccct cggattgccg ttcagtgaag tggagcggaa cgaccttgcg
    14461 accgtcccgc tcacgaggct ttacgcacta cgtactgcga tagcttcaat ttccagcttc
    14521 acatctttcg gcaaacgcgc aacctgcaca cagctccggg tcgggtaggt cgcctgatgc
    14581 tcatcgaaga actgcttata gacttcattg atggtggcaa aatcattcag atcggtgatg
    14641 aacacggtca tcttgatgat atcgcccacg ctcagcccgg cagcaaccac gatcgctttg
    14701 acgttttcga ggcttaaacg cgcctgatct tgcacatcag ccgggatctc accggtctgc
    14761 gggcaaaccg gaatttgccc ggaggtgaag accatgctgc ctaaatcaac gccctgaaca
    14821 taagggccga ttgcgcctgg ggcacgttgc gtttcgataa tctttttcat acatcctccg
    14881 gcgtcagagc gcctgggtaa aagtacgtga aataacatcc tgttgctgtt cacgggtcag
    14941 tgcgttgaag cgcacggcgt agccagagac acggattgtc aggttaggat atttttccgg
    15001 gtgctcgatg gcatccagca gcatttcccg attcattatg ttgacgttga ggtgttgacc
    15061 gccttcgaca tccgcttcgt ggtggaaata cccatccagc aggccgacaa ggttggtttt
    15121 acgtactgga tcttctttgc ccagcgccgc aggaacgatt gagaaggtgt acgagatccc
    15181 atctttggcg taggtgaacg gcagtttcgc caccgacgtc aatgaggcca cggcaccttt
    15241 gcggtcacga ccatgcatcg ggttagcgcc cggcgcgaac ggtgttccgg cgcgacgacc
    15301 gtccggcgta ttaccggttt tctggccgta caccacgtta gaagtgatag tcagaatcga
    15361 ctgggtaggg acggcgttgc gataggttgg cagcgcttta attttcttca taaagcgttc
    15421 aaccaggtcg caggcaatgc tgtctacgcg ctcgtcgttg ttgccgtact gcggatattc
    15481 accgtcgatt tcaaagtcca ccgccaggcc gttttcgtca cggattggtt tcacgcgggc
    15541 atatttgatg gcagacaggg agtccgtcgc caccgacagg cccgcgatgc cgcatgccat
    15601 agtgcgatag acatcacgat cgtgcagcgc catcagcgaa gcttcgtagc tgtacttgtc
    15661 gtgcatgtag tgaatgatat tcagcgcgct gatgtactgc accgccagcc agtccatgaa
    15721 gtgatcgagg ctgtccatca ctttgtcgta atccagcacg tcgtccatca gcggtgctgt
    15781 tttcggcccg acctgaatct tcagcttctc gtccaccccg ccgttaattg cgtagagcag
    15841 cgttttcgcc aggttagcgc gtgcaccaaa gaactgcatt tgcttaccaa tcaccattgg
    15901 gctgacgcag caggcaatcg cgtaatcgtc gctgttgaag tcagtacgca tcagatcgtc
    15961 attttcatac tgcaaggaag aggtgacgat cgacacctgc gcggcatatt ttttgaaggc
    16021 aatcggtaat tcttccgacc aaagaatggt caggttaggt tccggtgccg gccccatagt
    16081 gtgcagggtg tgcaaatagc ggaaggagtt tttggtcacc agcgtacgac cgtccagccc
    16141 catcccgccg atcacttccg tcgcccagat tgggtcgccg gagaacagcg aatcaaattc
    16201 cggtgtacgc aggaagcgta ccatacggat cttcatgatg aagtgatcga tcagttcctg
    16261 tgcctgctgc tcattgagta cgccagcttc aaagtcgcgc tcaatgtaga tatcgaggaa
    16321 cgatgccgtg cggcccagcg acatcgcgcc gccattttgc gatttcactg ccgccagata
    16381 agcgaagtag agccactgca ccgcttcttg cgcattctgc gccgggcgag agatatcaaa
    16441 gccatatttc gccgccattt cctgaatctg caacagcgca tgacgatgct ctgccagctc
    16501 ctcacgcaga cggatggtgg cttccagatc ctcgcctttt tccagacgag actggagatc
    16561 ggcaaattgc agttcgcgtt cacgtaccag ataactgatg ccatacagcg ctacgcggcg
    16621 atagtcaccg ataatgcgcc cacggccata gccatctggt aaaccggtca gcacgccaga
    16681 tttacggcag cgcagcatat ccggtgagta aacatcaaat acgccctggt tatgggtttt
    16741 acgcagatcg gtaaacagat attcaaattc actgtccatt tcacggccat aggcgtggaa
    16801 tgaactttta atcatattaa tgccaccgaa cgggtgtagc gcacgtttca acggcgcatc
    16861 cgtttgcagg ccaacaattt tttccagcgg ctggttaata tatcccgcat catgagcggt
    16921 aattgtggtg gcaatattgg tatcgaaatc aaccggcgcg tgggttgcgt tttcgatacg
    16981 gataccttcc attacttttt cccacaattc cgtggtggca ggcgtcgctt cggcgaggaa
    17041 agattcatcg ccttcatacg gtgtatagtt atgttgaata aaatcgcgga cattaatttc
    17101 gtttttccag tccgtacctt taaagccaag ccatgcgtcg gcgtacagct tatcgctggt
    17161 atcaatatct accttcatga aaaataatct ctctacaata cttcaactaa attatgcaaa
    17221 ttctgcgggc gcgttaactt tgcctaaatg aatggcatcc aaagcaatca ttttttcttc
    17281 gttagtcgga ataacagcgc aaatgacacg cgcattttca ctggaaacaa ttcgctcacc
    17341 acaggagtta gagcgattat tcatttctgt atcaatctct acgcctaata cagccaaatg
    17401 ttccatgacc agacgacgaa ttaagcttga attctctcct attccgccgg tgaatataat
    17461 tccatccagg cgacgtaatg aagctgcgtg tccggcaata tgacgggcaa ttcggtgaac
    17521 aaaggtttta attgccagtt gcgcgcgttc gtgaccttca tgccaggctt tttccagaac
    17581 acgtaaatcc gaagaaagac cggaaatacc taataatccc gactctttat tcactacgcg
    17641 ttccaggtca cccaagctct ggttggtttg gctggcgacc caggacatcg caccaaaatc
    17701 gacatcgcca ctgcgggtac ccatcatcaa gccttccagc ggcgtcattc ccattgaggt
    17761 gtcaacactc tgaccgttgc gaactgcgca gattgacgcg ccattgccaa gatgcgccac
    17821 aaccaggccg gagtcatctt ccgctagatt cagcaaagaa tgtgcgcgct gggaaacata
    17881 gcggtgcgac gtgccgtgga aaccataacg gcgtacacct aactcttcat aatatttcca
    17941 cggcaggccg tataaataag cttccggagc catcgtctgg tggaaactgg tatcaaatac
    18001 cgccacctga gttacgcccg gaaataattg ctgcgccgat tcaataccac ttaaattggc
    18061 gtaattatgc aggggtgcca gtggagaaac gcgacggata ttatcaatga cctcatcggt
    18121 aataatggcg gactcggtaa aaatactgcc gccgtgagcg atgcggtggc caattaaggc
    18181 cacactgtca tttaaattcc gtttttccag ttcaaatgca attgccttca atgcaccttc
    18241 gtagctgtgg tgagccagcg gtgctggctc tcccccattt acggataaga atgcattttc
    18301 tgagttaata ccgtcggcaa tacctgacat taatacttca cagtcgctgg catcgagtac
    18361 ggaaaactta atcgaagacg aaccacagtt aataaccaaa acaaccggaa attcattcat
    18421 ctcttttctc atcctgagtt acggattaaa acagtttgta tacgatgttc aggatggtca
    18481 gcagaccaat cacggtaaca aacacgttat ccagacgacc acggtatttc gccagagacg
    18541 gtgctttacg gatggcatac atcggcaaca ggcacagcag ggatgcgata atcggtgcgc
    18601 ccatggcttc aataaggtcg aggatgttcg ggttggcgta ggcaacaacc caggtggagc
    18661 ccatgatgaa gatcatgctg atagtgttca gtttacccag cgacacttta gttttgtcgc
    18721 ctttataacc gaacttcaga atcagaccat tcaagccttc cagcgtcccc agatagtgac
    18781 cgaagaaaga tttgaagata gccacgagtg cgatgatgga agccgcatat tccagtgtaa
    18841 tcgcgaacgt tgttttggta ccggtcatgg acgcaaagtg gttagccaga taagaaagca
    18901 ctggaatatt ctgcgctttg gcttccgcca tgttggccgg agacagcgta aacaggcagc
    18961 taaaggcaaa gaacatcacc actgcaacca tcagcatgct ggcacgagaa atgatttggg
    19021 aacatttacg ttcggtgaag tcgcgaccga agtctttctc atactcttca cgtttagaaa
    19081 ccacgaagga agagacgatt ggcgagaagt taaaggagaa aaccatgatg gaaatcccca
    19141 gccagacagt gatcaggata ccgtcatgac cggttaacga cagcgaaccg aggtcaacct
    19201 ggtcgataac tgcagagttc cagtaaggga tcagcgacag agaaatcagc accaggctgg
    19261 cgataaacgg ccataccagg tagctcatca ctttaaccat cagatcctta ccaaaccaga
    19321 tgacgaaagc catcagcagc aacaggaaca gcgccacaaa gccgcgattc agcggtgcaa
    19381 atccgagctg gttttcccag aacgtcataa aggtattggt aatagtaacg ccataaatcc
    19441 acagcagtgg gcaaatcgcg aagaagtaca ggaacgtgat aaccacgccg ccagttttac
    19501 caaaatgctc ttccaccgtt tccgtaatgt tgccggaagg gttagagcca gaaagacaca
    19561 gacgcgccag cgcccggtgg caataaaatg cgatggggta tgccaatacc aacatcagaa
    19621 gaatcgggat cagtccgcca aaacctgcgc ggatagggaa gaacagcacc ccggcgccga
    19681 ttgccgtacc aaacaagcct aacgtccatg tggtatctga tttacgccag gacgattgtt
    19741 ttgtctggct ggatacaatg ctatctgaag tactcatatc ctatcctcaa cgaattaatt
    19801 aagcgtcaac gaaaccggtg atttgagaga cgcgagaaag atcgatattg ccgccggaaa
    19861 taatactgac ggtttttctg ttttgaatat attggtctaa tttaccgctt aataatgcag
    19921 cacatgccag agcacctgcg ccttcggtga cgactttatt gcgctgaatt aaggcaatca
    19981 tactgtttct gatttcgtct tcgctgacca gcacgatgtc atcgactaat tcacgaacga
    20041 tttcgtaagt taaattaccc gggcgggaga catcacaacc atccgccagg gtgccggtag
    20101 ttcggtgcgt ggttatttct ccggagtgga aagaagccgc catgccgtga acgttttctg
    20161 actgtacgcc aataacacga atggtcgggt taatagattt aattgccacc gcaataccag
    20221 caattaaacc accaccacca attggcacaa tcacgttatc gacatcatag agatcttcca
    20281 taatttccag accaatcgtt ccctggccag caatcacttt cggatcatcg taaggtggga
    20341 taaaaatacg accttccatt tcgacaattt cgctcacttt agcgatagtg tcgttgaagt
    20401 tatcaccatg cagaacgact tctgcggagt agtcgcacgt tgccgctact ttggattttg
    20461 gcgcaccttt tggcatcacc actttaccgt cgatacccag catcgcgcag gagagcgaaa
    20521 ccccttgcgc atggttgccc gcagaacagg ccaccacgcc tttgcgtttt tccgcatcgg
    20581 tcagtgaact taatttatta aatgcgccac gaattttaaa tgaacccgta cgctgcatat
    20641 tttcaaactt caggaatatt tcacctttgc aacgttcact aaaatagttg gagcgaggca
    20701 tgcctgtttt ataaattcgc ccagccagtc gttgtttcgc ttcaataata tcatcaatag
    20761 caaccggcag atcgtatgta atatgcatta taaaacctct tcgcctgaat taaatatgta
    20821 gataaccgta accgacacct gcaaaacaga caggtggatt atttatgttt aaataaaaac
    20881 aaataactaa ccaacttcta ttaatagcct tcgtctacac ccattataag atgaatactc
    20941 tttggctaat tccaccaaaa ccgatgctgc ttttttaata cgataatttt tcgaccatac
    21001 cgcggcatat tgtgccacag gtaatgtttc ttcaactgga atagtaataa attgatttga
    21061 accaaaaggt gacgtcatat cacaaggaat tacagttaag aaatcagcat tgagaacaag
    21121 attataaatt gtcacgactg agtcggtttt aacgatgttt tcaatactga tgccatttct
    21181 ttgtaacgta gtaagaagct cgctgtagta ccccatattg gtttgtggca acacccactg
    21241 ttcgttcttc aacgactcca gcgtggtggt gccggtgcat gttcgggact tactggctac
    21301 cagcacaaac tcggactcga acagcggctc aacatgtaaa tcctgaagct tcatttctgc
    21361 acttaacgta ccaatcgcaa aatccagtcg accgtcgcgg attgccggta agaacgaaga
    21421 cagttgcgct tcatacatag aaacctgcgc tttcgggaac acctctttga acttgttgat
    21481 catccctgac ataaaagtaa aaccaatcaa tgaaggaaaa ccaaatgaga cttccaccac
    21541 cgcctcagaa gacataccgc ttatctcatt aaccatattt ttcatttcac gggtaatgga
    21601 ttcggaacgg gagagtaaca attgaccggc aggtgttaat gttacaccgg tatttttccg
    21661 caccactaat tccacaccaa aataatcttc aatatcgtta atgattttac tgacggccgg
    21721 ttgagttaac cctaattctt ttgcagccga gccgatagag ccacttctaa tgacttcctg
    21781 aaagactacc aggtgctgcg ttttcggaag aagaatagtg ctcataacga cctacgttaa
    21841 ttacctcatt gacggcatga agtgtatcaa aatgaaatga acaggatatg tgcgaccact
    21901 cacaaattaa ctttcattac tttccagggt atcgttatta caattaaata tctttaaata
    21961 tcaacaagtt aaaacataaa aatcagcata aaccctgatt tttatcaaaa aaaatgacgg
    22021 ggataaccat attttatggc gataacatca ttcgttatgt ggttaataca aaaaaggggc
    22081 tgagaccata tttcaagcaa ttaccggata attaccaggc aaaatttgag ttaaatttaa
    22141 tgagcaagtt ctcaaatttt attataaata aaccattttc agcgataaat actgcggcac
    22201 gtcacatttt ttcacgctat ttgttggaga acaaacattt attttatcaa tattttaaaa
    22261 tttcgaatac aggtattgat catctcgaac aattgattaa cgtcaacttt ttctcttctg
    22321 acaggacgtc attttgtgaa tgcaatcgtt ttccataaat tcttctcccc tcataggcga
    22381 cgaatagcat tttgtgttga ggatcacaaa acaaataatt gctggtcgcc gcgataaggt
    22441 cagacgaagt caacaagggg aattttcact gtgctttaca tcagcgtagg acacagaatg
    22501 ttgcttcgtt tactgtaacg ccgggtaaat gagcgttttt tgatagtgcg taagtgtcgt
    22561 gcgaggaaaa taagcatcta ttattgtttg tcatgacgac aaggcaggca tcaatgaaag
    22621 gcttcccaat tgcacatatt tttcaccctt caatcccgcc aatgcacgca gtggttaaca
    22681 atcacaatag aaatattgat tattggacgg taaaaagaaa gtttgcagaa attgtctcca
    22741 ccaatgacgt taaaaaaatt tacagtataa gtaatga
//
LOCUS       DAJVUP010000058        22768 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.058, whole genome shotgun sequence.
ACCESSION   DAJVUP010000058 DAJVUP010000000
VERSION     DAJVUP010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22768
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.058"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            113..719
                     /locus_tag="OQQ75_002014"
                     /pseudo
     CDS             113..719
                     /locus_tag="OQQ75_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001544752.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            822..1324
                     /locus_tag="OQQ75_002015"
                     /pseudo
     CDS             822..1324
                     /locus_tag="OQQ75_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YfbM family protein"
     gene            complement(1391..2848)
                     /gene="nuoN"
                     /locus_tag="OQQ75_002016"
     CDS             complement(1391..2848)
                     /gene="nuoN"
                     /locus_tag="OQQ75_002016"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HCS1976352.1"
                     /translation="MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIG
                     LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK
                     DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT
                     ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGMMIVGLGFKL
                     SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAII
                     AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYL
                     FSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGF
                     IGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQY
                     SAGGIVVLISALLVLVLGVWPQSLISIVRLAMPLM"
     gene            complement(2855..4384)
                     /gene="nuoM"
                     /locus_tag="OQQ75_002017"
     CDS             complement(2855..4384)
                     /gene="nuoM"
                     /locus_tag="OQQ75_002017"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HCS1976353.1"
                     /translation="MLLPWLILIPFIGGFLCWQTEHFDVKVPRWIALITMGLTLALSL
                     QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV
                     LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK
                     ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSG
                     VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL
                     PLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS
                     QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA
                     VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS
                     QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR
                     P"
     gene            complement(4548..6389)
                     /gene="nuoL"
                     /locus_tag="OQQ75_002018"
     CDS             complement(4548..6389)
                     /gene="nuoL"
                     /locus_tag="OQQ75_002018"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HCS1976354.1"
                     /translation="MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV
                     TAFIGVDFFANGEQAYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY
                     ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
                     PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA
                     TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT
                     PEILHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH
                     LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYFCFLVGGAALSALPLV
                     TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG
                     VTHSLPLIVLLILSTFVGALIVPPLQSVLPQTTELAHGSMLTLEITSGVVAVVGILLA
                     AWLWQGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN
                     SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR"
     gene            complement(6386..6688)
                     /gene="nuoK"
                     /locus_tag="OQQ75_002019"
     CDS             complement(6386..6688)
                     /gene="nuoK"
                     /locus_tag="OQQ75_002019"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HCS1976355.1"
                     /translation="MIPLQHGLILSAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL
                     AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG"
     gene            complement(6685..7239)
                     /gene="nuoJ"
                     /locus_tag="OQQ75_002020"
     CDS             complement(6685..7239)
                     /gene="nuoJ"
                     /locus_tag="OQQ75_002020"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HCS1976356.1"
                     /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF
                     SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI
                     MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR
                     EERAGEVLSNRKDDSAKRKTEEHA"
     gene            complement(7251..7793)
                     /gene="nuoI"
                     /locus_tag="OQQ75_002021"
     CDS             complement(7251..7793)
                     /gene="nuoI"
                     /locus_tag="OQQ75_002021"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HCS1976357.1"
                     /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY
                     RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC
                     GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG
                     KDKGEAENEAKPIDVKSLLP"
     gene            complement(7808..8785)
                     /gene="nuoH"
                     /locus_tag="OQQ75_002022"
     CDS             complement(7808..8785)
                     /gene="nuoH"
                     /locus_tag="OQQ75_002022"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HCS1976358.1"
                     /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ
                     NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP
                     VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL
                     GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE
                     QELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTA
                     FFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ"
     gene            complement(8782..11508)
                     /gene="nuoG"
                     /locus_tag="OQQ75_002023"
     CDS             complement(8782..11508)
                     /gene="nuoG"
                     /locus_tag="OQQ75_002023"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HCS1976359.1"
                     /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA
                     CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD
                     CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY
                     YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK
                     WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK
                     DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE
                     ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA
                     VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP
                     VEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLE
                     VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV
                     LENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE
                     GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE
                     LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG
                     NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS
                     VPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT
                     RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ"
     gene            complement(11561..12898)
                     /gene="nuoF"
                     /locus_tag="OQQ75_002024"
     CDS             complement(11561..12898)
                     /gene="nuoF"
                     /locus_tag="OQQ75_002024"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HCS1976360.1"
                     /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG
                     LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR
                     LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI
                     MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN
                     VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED
                     YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN
                     MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG
                     PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW"
     gene            complement(12895..13395)
                     /gene="nuoE"
                     /locus_tag="OQQ75_002025"
     CDS             complement(12895..13395)
                     /gene="nuoE"
                     /locus_tag="OQQ75_002025"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HCS1976361.1"
                     /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY
                     QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE
                     LLERYK"
     gene            complement(13398..15200)
                     /gene="nuoC"
                     /locus_tag="OQQ75_002026"
     CDS             complement(13398..15200)
                     /gene="nuoC"
                     /locus_tag="OQQ75_002026"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HCS1976362.1"
                     /translation="MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATR
                     TGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHL
                     ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM
                     PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFL
                     NLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE
                     YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT
                     PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLA
                     SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF
                     DFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERT
                     LQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY
                     AHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR"
     gene            complement(15294..15956)
                     /gene="nuoB"
                     /locus_tag="OQQ75_002027"
     CDS             complement(15294..15956)
                     /gene="nuoB"
                     /locus_tag="OQQ75_002027"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HCS1976363.1"
                     /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND
                     MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC
                     FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP
                     RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD
                     EI"
     gene            complement(15972..16415)
                     /gene="nuoA"
                     /locus_tag="OQQ75_002028"
     CDS             complement(15972..16415)
                     /gene="nuoA"
                     /locus_tag="OQQ75_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoA"
                     /protein_id="HCS1976364.1"
                     /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR
                     SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE
                     AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR"
     gene            complement(17046..17984)
                     /gene="lrhA"
                     /locus_tag="OQQ75_002029"
     CDS             complement(17046..17984)
                     /gene="lrhA"
                     /locus_tag="OQQ75_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LrhA"
                     /protein_id="HCS1976365.1"
                     /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ
                     QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT
                     IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA
                     FKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYV
                     ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL
                     AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE"
     gene            18903..20120
                     /gene="alaA"
                     /locus_tag="OQQ75_002030"
     CDS             18903..20120
                     /gene="alaA"
                     /locus_tag="OQQ75_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase AlaA"
                     /protein_id="HCS1976366.1"
                     /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA
                     PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN
                     GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD
                     IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA
                     EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL
                     CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM
                     FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL
                     SKFARFLSGYHQL"
     gene            20204..20802
                     /gene="yfbR"
                     /locus_tag="OQQ75_002031"
                     /pseudo
     CDS             20204..20802
                     /gene="yfbR"
                     /locus_tag="OQQ75_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311202.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
     gene            complement(20861..22693)
                     /locus_tag="OQQ75_002032"
     CDS             complement(20861..22693)
                     /locus_tag="OQQ75_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HCS1976367.1"
                     /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT
                     VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV
                     AGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV
                     VNSELLREGYHGFSFFSVTPVGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR
                     DLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN
                     GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE
                     SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML
                     AKQGRDFVALNLPEEVSEVSPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLM
                     GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM
                     LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV
                     SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF"
BASE COUNT         5844 a         6275 c         5695 g         4954 t
ORIGIN      
        1 ttgtatagat ctaacaaccg taataaaaca aatactcata actcattata aataatgata
       61 aaataacgtc ttttattgat aatttatata tgggaaaaat tccttttgtt atattgtttc
      121 tgatttcact ccctctgatt atttttacca accctgggtc actgcattac caccaacgcc
      181 ccgacacgtc agtcctgagc aattagaaaa aacagttcgt tatcttacac aaactgtgca
      241 tccacgtaat gccgacaata ttgataatct gaataggtcc gtagagtata taaaagagtt
      301 ctttgtcagt agcggtgcca gagttaccgc gcagggcgtc cccgattggc tattacgact
      361 ctgcgcctgg tagccaggat tacctttacc cgcaatgtcc tggctttatc ccgatcgggg
      421 ggactttatt gcctggtcgg cagaatacag gatatcaacg ccgttcgtca ggtaaaaacg
      481 gcattgttat catcccggga tttatctgtt tattctatga atgccccatg gtttattccc
      541 ggtattgatt tctctgacca cctgaattat tggcaacacg atattcccgc cgtaatgatt
      601 actgacaccg ctttttatcg taataaacaa taccacttgc ccggtgatac agcagacaga
      661 ttgaattatc agaaaatggc tcagatggtg ttataacctt gttacacaac agtaaataat
      721 aaaaatttct cgaggcgggt ccagaaacag cgacatgtac attttatttt ccctcgtctg
      781 ttttaagatg cgaaacataa aattcaatgg aggaaaaata aatgggaatg attggttatt
      841 ttgcagaaat tgactcagaa aagattaacc aatctgcttg agtctactga aaaacctttg
      901 atggataata tacatgacac gctttcagga ttacgccgac tggatattga taaacgctgg
      961 gattttttac actttgggct gacaggcacc cctgcttttg atcccgcgaa gaatgatccg
     1021 ctgagtcgtg ccgtgcttgg tgaacacagc ctcgaagatg gcatagatgg cttcctggga
     1081 ttgacctgga atcaggaatt agccgcgaca atcgaccgac tggaatcact ggatcgaagt
     1141 aagctgcgta aacagttttc cattaagcga ctatgaaatg gagatttatc cgggagtgac
     1201 cttttcagaa gagttagagg ggcaactctt tgcctcgatc atgcttgata tggaaaagct
     1261 gattagcgcg tatcgacgta tgctgcgaca agggaatcat gcgctgacgg ttattgttgg
     1321 gtgatggtgt cagagcgcca aaaaaaaccg ccgaacatgt cggcggtttt ctgacttaca
     1381 aactaacaga ttacatcagc ggcattgcta accgcacaat actaatcagc gattgtggcc
     1441 atacacccag caccagtacc aacagtgcag aaatcagcac cacgataccg cccgcgctgt
     1501 actgccagtt tgacggtgca tcgcgacccg gttgttccgg tgcgtgcagg tacaggctca
     1561 ccgccacgcg caggtagtag tagaggccga ttgccgaacc gacaaccacg gcacccacca
     1621 gccaccacaa gtgtgcctgg acaccgaccg ccagcacgta gaacttaccg ataaagccca
     1681 gcgtcatcgg gataccggcc agagacagca tcatcaccgt catcactgcc gcgaggatcg
     1741 gacgatgcca gaacagaccg cggtaagaga acagggaatc agcatccggg ccacgatacg
     1801 ggctggacat caggctgacc acgccgaacg cgccgaggct gctgaacaga taaccggcca
     1861 ggtaaacccc taccgcttcc atcgacatct cgccggtttg cagcgcaatc agcgccacca
     1921 gcagatagcc gaggtgagag atagatgagt aaccgagcag acgtttgatg ttggtctggc
     1981 tcaacgccat caggttaccg aagatgatgg aggcaaaggc gataatcgcc agtactacgc
     2041 gaatcgcttc gctgtcaccc accggtgcat agaggaacag acgcatcacc acaccgaaga
     2101 tagcgatttt gctcgccgtc gccaggaaag tggaaaccgg cgcaggcgcg ccctggtata
     2161 cgtctggcgt ccacaggtgg aacggcacca gagagagttt gaagccgagg ccaacaatca
     2221 tcatgccgaa acctgccagc aacagcggct cgttgagcat accgtcgccg aggtttttac
     2281 ccagcgcgac aaacgacagg tcgccagact gcgcatacac cagcgccata ccaaacagca
     2341 ggaaagaaga cgctgcggca gaaaggatgg tgtatttgat actggcttcc agcgaacgtt
     2401 tctggcggaa agcgtaaccg accaggccaa acagcggcaa agagatcagt tcaataccga
     2461 ggaacagaga cgccagatgg tttgcattcg ccagcaggat cccgcccagc gcggcaatta
     2521 acaccaacag gtagaactca tccttgttgt cgttatagcc ttcaagccac gggtaggcga
     2581 aagtacaggt ggcgaggctc gccaacaata ccagcccggt gtaaagcatg gcgaaaccat
     2641 caacgcgcat cagcggcgta acgtccatag cgcccgcctg gccaacaaac cagagcgaaa
     2701 ccagcgccgc gttaagccca ataaccgaga gcgtagcgtt gaggaaatga ttgcgtcgcc
     2761 acgcaatgga gagcatcaca accaccaccg ttaagccgac gatcagcaac ggtagcagtg
     2821 cgatcaggtt ttgtggagtt attgtcatgg cgatttacgg ccttgtagta gtaacggaat
     2881 taacaaacca ctgctggata ttgccaatcg cggagtgcga ggtatccaga atcggctgcg
     2941 gatagaagcc cagcagtacc agcagcacca ccagcaacag gatcataaac agctcacgca
     3001 gcgacatccc tggcagttcc tggctggcaa tctggctttt cgctttaccg aagtaagcgc
     3061 gatgcaacat cgccagcgaa taaacagatg caaagaccag cccaaaggta gagataacgg
     3121 taatcaccgg gacaacctgg aagctgccga acagaatcat aaattcgccg acgaagttac
     3181 cggtgccagg catcccaagc gttgccaccg caaagaacag cgacaatgct ggcagccatt
     3241 tcatcttgct ccacagaccg cccatcatgc gcatgtcgcg ggtatggata cgttcataaa
     3301 gctgaccaca aagaataaac agacccgccg ccgacaaacc gtgcgcaatc atctggatta
     3361 ccgcgccctg gtaggccaac tggctgccgg tgtagatagc aatcagcacg aagcccatgt
     3421 gggaaaccga ggtgtaggcg atcagacgtt tgatatcggt ctgggcgaag gccatccacg
     3481 caccgtagaa gatgccgata acacccagcc acatagcaat tggcgcgaac tctgccgacg
     3541 cgttcgggaa cagcggcagg gagaaacgca gcaaaccgta agcggcagtt ttcagcaaga
     3601 tccccgcgag atcaacggaa ccggcggtcg gagcctggga gtgcgcatcc ggcagccagc
     3661 catgcagcgg aaccaccggc attttgactg cgaaggcgat gaagaagccc agcattaaca
     3721 ggtattccac accactggac attggcgtat tcagcagctc ttcatagttg aaggtccaga
     3781 cgccggtcgc attgtagtga acaaaaacca gcgccaggat ggcaatcaac atcaccaggc
     3841 cactcgcctg ggtgtaaatg aagaacttgg ttgccgccgt gatacgcgtt ttaccgtcag
     3901 aggctttatg cccccacagt gcgatcagga agtacatcgg caccagcatc atttcccaga
     3961 agaagaagaa caggaacatg tcgatggcaa ggaacacgcc gataacgccg cccaggatcc
     4021 acatcaggtt gaggtggaag aagccctgat atttttcgat ctctttccac gaacagagta
     4081 ccgccagcac accgagcaga ccggtcagca cgaccatcag cagcgacaga ccgtcaatgg
     4141 cgagatgaat agagatacca aaacgcggga tccacggcat gtcgaattca gactgccact
     4201 gcggaattcc ggcggattgc gtcagtgaat aaccgccctg caaccacagt tgcagcgaca
     4261 gcgccagcgt caatcccatg gtgatcagcg cgatccagcg tggcaccttg acgtcaaagt
     4321 gttcggtctg ccagcacagg aagccgccaa taaagggaat taatattagc cagggtagta
     4381 acatggcgat ctttattcct tgtaaaagtc ccgtcaggac cggattttca acgaattctc
     4441 acgacagaaa attctcttcg gactgggggt agtgtcggat gcgccgcgaa ggcagcttat
     4501 ccgacctacg ttcttatatg cccaggggca atcccacaat ccttaactca acgcagtacc
     4561 atcaacagtg ccagcaccac gaccgcaccg atgctcatgg atgccacata ccagcgcaga
     4621 taaccgttct cgcttaacag caggccttta cctgcaaagc gggaaagaac cgccggaatg
     4681 ttcatcattg agttcagcgg atcgcgtttc agcaaccagg caatacccag aaacggcttg
     4741 acgaacactt tgtcgtacag ccagtcaaag ccccaggcgt tgtaccacca ggtgcccagc
     4801 agacggcccg gcgcactgtt ggcaatggag gtcaccagag tacgtttacc ctgccacagc
     4861 caggctgcca gcagaatgcc gaccaccgcg accacgccag aggtaatttc cagggtcaac
     4921 atgctgccgt gcgccagttc cgtcgtttgc ggaagcacgc tctgcagcgg cggtacaatc
     4981 agtgcgccaa cgaaggtgga aaggatcagc agcacaatca gcggcaggct gtgagttacc
     5041 cctttcacgg cgtgagcgtg aatttgttct tttccgtgga agacgatgaa aatcatacgg
     5101 aaggtgtaga gcgaggtcat aaacgcaccg accagacctg ccaccatcag attgatatga
     5161 ccattcgcca tcgcacccgc gaggatctca tccttactga agaagcccgc agtgaccagc
     5221 ggtagtgccg acagtgctgc gccgcccacc aggaagcaga aataaaccag cggaatagat
     5281 ttacgcagac cgcccatctt gaagatgttc tgttcgtgat ggcaggccag aatgacggaa
     5341 ccggatgcca ggaacagcag cgctttaaag aacgcgtgag tcatcaagtg gaaaatcgcc
     5401 gcatcccatg cctgcacgcc aagcgcgagg aacatgtagc caatctggct catggtagag
     5461 taagcgagaa cacgtttgat gtcggtctgt accagcgcgg caaaaccggc cagcagcagc
     5521 gtaaccgccc cgacaatgcc caccagatgc agaatttccg gcgtcatcag gaacaggccg
     5581 tgggtacggg cgatcaggta gacacccgcg gttaccatgg ttgcggcgtg gatcagcgcg
     5641 gagacaggcg tcgggcccgc catcgcgtcg gcaagccatg tctgcaacgg caactgcgca
     5701 gatttaccga ccgcaccgcc cagcagcatc agcgtcgccc acatcagcat gttattgccg
     5761 tcagcaaagt gcgctggtgc cagttccacc atttcgcgga agttcagggt gcccagttcg
     5821 ttgtaaagaa tgaacagcgc gaaagcgagg aacacgtcac ccacacgggt cacgacgaac
     5881 gctttcattg ccgctgcgcc attcttcgga tcggtgtaat agaacccgat cagcagatag
     5941 gagcacaggc ccacgccttc ccagccgagg tacatcagca gcaggttatc ggcgagaacc
     6001 agaactacca tgctggcgat gaacaggttg gtgtaggcga agaagcgaga gtagccctct
     6061 tcaccgcgca tgtaccagga ggcgtacatg tgaataagga aacccacacc agtgaccacc
     6121 gagagcatgg tcagcgacag gccgtccagc accaggttaa aaccgatgtt aaagtcgcct
     6181 accgacatcc acgtccacag cggctggctg tatgcctgct cgccgttagc gaagaaatca
     6241 acgccgataa aggcggttac cagcgccgcc aggcccacag agccaacgcc gacgatcgcc
     6301 gaaacgtttt cagaccagcg cccacgggag aacgccagca ggacgaagcc aatcaatggc
     6361 aaaataatgg ttaaggcaag catgttcatc cgcgcatctc acttactgaa tcgatgttca
     6421 ggttctggcg acgacggtga agttgcagca gcagcgcaag gccgatactc gcttctgccg
     6481 ccgcgaggct gatggcgaga atgtacatca cctgaccgtc ggtctgaccc cagtagcttc
     6541 cggcgaccac aaaggccagc gcggaggcgt taatcatgat ttccagacca atcagcataa
     6601 acagcagatt gcgacggata accagaccgg ttaagccaag aacgaataag attgccgaga
     6661 ggatcagtcc atgttgtaag gggatcatgc gtgctcctcc gtttttcttt tcgcgctgtc
     6721 gtctttacga ttgctcagca cttcacccgc acgctcttca cgaccgacgt ggaaggccac
     6781 aaccagaccc gcgagcagca gcatagaagc cagttccacc gccagtacgt aaggcccgaa
     6841 cagcgtaata cccactgctt tagcactgat tggcgtaccg tcgataccct gatcattaac
     6901 accaaggatg gcgtaaacaa tcaccaccag catgatggcc gacaaaattg ccggaccaat
     6961 ccacacctgc ggtttcagcc actggcgttc ctgttcgatt tctgaaccgc ccaggttgag
     7021 catcatcacc acgaacacga acagcaccat aatggcaccc gcgtagacga taatttccag
     7081 cgcaccggcg aagtaagcgc ccagtgagaa gaacaccccg gaaatcgcca gcagcgaaat
     7141 aatcaggtac agcagtgcgt gtaccggatt ggtatgggtg atcactcgca aggtcgcaag
     7201 tatggctatc aggccacaga tataaaaagc gaactccatt gcccctctcc ttacggtaac
     7261 aggctcttga cgtcgatagg cttggcttcg ttctctgctt cgcccttatc tttgccgtcg
     7321 attgccatac ctgccatccg gtagaagtta tattccgggt atttgcccgg accggagatc
     7381 agcagatcct ctttttcgta aaccagatcc tggcgcttgt attcccccat ttcgaaatcc
     7441 ggggttaact gaatcgccgt ggtcggacag gcttcttcgc acagaccaca gaaaatgcag
     7501 cgtgagaagt tgatgcggaa aaattccggg taccagcgac cgtctttggt ttctgctttt
     7561 tgcagcgaga tacagccgac cgggcaggct accgcgcaga ggttacaggc tacgcaacgc
     7621 tcttcgccgt ccgggtcgcg ggtcagaacg atacgaccac gataacgggg cggcagatag
     7681 accggctctt ccgggtacat tcgcgtttcg cgtttggcga acgcgtgcag gccgatcatc
     7741 cagatactac gaacctgggt gccgaaacct actaacaatt cttttaaggt catggtctta
     7801 ttgcccctta ttgcgcctgc cagagaatga cagccgccgt taccagcaag ttgatcagcg
     7861 tcagcggcag gcagattttc cagccgaagg acattacctg gtcataacgc ggacgcggta
     7921 acgacgcacg aatcaaaatg aacatcatca taaagaacgc ggttttcaac gcgaaccaga
     7981 tgaatggcgg taacaacggg ccttgccagc caccgaagaa cagcgtcacc atcaatgcag
     8041 agatggtcac aatcccgatg tactcaccca cgaagaacag accgaacttc ataccggaat
     8101 attcaatgtg gtaaccatcc gccagttcct gctcggcttc cggctggtca aacgggtgac
     8161 ggtgacatac cgccacgccc gcgatggcaa aggtaataaa accaaagaat tgcgggataa
     8221 cgttccacac atgcgcctgg ctgttgacga tgtcggtcat gttgaatgaa ccggcctgcg
     8281 ccaccacgcc catcagggaa agcccgagga acacttcgta gctcagggtc tgcgcagaag
     8341 cacgcatcgc acccagcaac gagtatttgt tgttacttga ccagcccgca aacagcaccg
     8401 cgtaaaccgc cagacctgcc atcatcagga agaacaaaat cccgatgttc aggtcggcaa
     8461 ccacccaacc cggactgact ggcacaatcg caaaggccag cagcagcgag gtaaaggcaa
     8521 tcatcggtgc cagggtaaag atgacgcgat ccgagaattt cgggatccag tcttctttaa
     8581 agaacatttt gatcatgtcc gcaaccagct ggagcgaacc gccccagcca acacggttag
     8641 gtccataacg gttctggaac agacccagca ggcgacgttc gccaaagctc atgaatgccc
     8701 cacaggtgac aaccaccagc aggatcacca ccgctttgag gatggtcagc aggatctcaa
     8761 tcagttccgg tgatatccaa ctcattgttg tgcctccttg agatcctcaa gatgcgcgcc
     8821 agccagcacc ggagcaatgc cggacatacc catcggcaag cccacctgcc ctgccgtcag
     8881 tccttcggcg atttcaaccg gcagcgtgac cgtgttgcca tcgtaactaa aggagacgcg
     8941 tgtacctgcg ttcacaccca acttcgcggc atccgctggg ttgagtttga tgtacggctg
     9001 cggcatacgg ctctggaaga ccggagcacg ctgtgacaat tcatcgctgc caaacaggtg
     9061 gtaatacggc gcaatacgcc atttcccgtc ctgcggctgg aagcgtgccg gtacgctggt
     9121 gaagtaatcc agaccattct cgctggtttc aaacagacgc acgcccggat cgccaaagcg
     9181 cagtttgccg cccacttcgt cctggaattt gttccacgcc tgcggggagt tccagcccgg
     9241 tgcccaggca aacggcactt gcgaacggtg cgcggtcggc tggttgttac cttccatcga
     9301 gaaggtgaac atggtgtcaa tatcctgcgg ctgacgcggc tcatgaacgc tgatattggc
     9361 gcgcatggcg gtacgaccgc tgtaacggtg cggttcacgg gccagtttct gcccacgaat
     9421 acggaatgtc gcatccggcg cagcatcttt gatacctgcc agttccggga ttttcgccac
     9481 aacagcgtca atcacatggt cgagctgcgt ccagtccact tcacggctca gcagggtgct
     9541 gtgcagcgag tgcagccagc gccagctttc cagcatgaca gttttgctgt cgtaataagc
     9601 cggatcgtaa acctggaaga aacgttgggc gcgaccttca ttattaatta ccgtaccgtc
     9661 gctttcagca aagctggcgg cggaaagtac cagatgggcg ttttccatga tcgctgtacg
     9721 ctgatggtca accaccatca ccagcggtgc tttagccagc gcagcattca cgcgggtagc
     9781 agaagcgtga cgatgcagat cgttttccaa caccaccacc gcgtcggcgc gtccggtttc
     9841 cagttcggtt aacgcttctt caagcgaacc gccacccata atgcccagcc ccatgctgtt
     9901 gacggaacgg gcaatcatgg tgataccgac gtcagcgccg cgacctttca gggctttcgc
     9961 gacgttagcc gccgcctgaa tcacctctaa gctaccggcg ttcgtcccgg agataatcaa
    10021 cggtttcttc gcacctgcca gtgcctgcac gatgacgtcg attttgcttt gcagctcagg
    10081 ttcgataccg tcaaccgctg gtgcagagtt atccagcgca tgggcgatgg caaaacctaa
    10141 acgcgcctga tcttcaaccg gtgcgcggta agtccacgcc gcgatatcat ccaaacgggt
    10201 gtcatcaacg ttggtaacaa acagcggatg cttcgcacgt tgaccgatgt taaggattgc
    10261 cgcaatctgc cagtcagcca ctttctgtgc tgccgccatt tcgcgcgctt tacctttcac
    10321 cgcctgacgc actgccagcg cgacgcgcgc gccggtctgg gtaacgtctt cgcccagcac
    10381 cagtaccgca tcgtaagatt cgatttcgcg cagagccgga gtataaatgc cgccttcacg
    10441 cagcactttc agcgccagtt gcagacgttc ctgctcaccg tgagcgatac cggtgtagaa
    10501 gttttcttcg cccaccagtt cacgcagtgc aaagttgctt tccacgctgg cacgcggaga
    10561 accaataccg atcactttct tcgactgacg cagaatatct gccgcgccct gcattgcctg
    10621 ttcggcgttg agggtaatga aatcatcgcc acgacgctgt actggctgac gcggacgatc
    10681 cttcaggttg acgtaaccgt aaccgaaacg accacggtcg cagaggaagt agtggtttac
    10741 cgtaccgttg taacggtttt cgatacgacg cagttcgccg taacgttcac cggggctgat
    10801 gttacagccg atggaacatt gctggcagat gctcggcgca aactgcatat cccatttacg
    10861 gttgtaacgc tcggagtgcg ttttgtcggt aaatacgccg gtcgggcaaa tttcgaccag
    10921 gttaccggaa aattcgcttt ccagcgtgcc gtcttccggg cgaccgaagt agacgttgtc
    10981 gtgcgcgcca taaacgccca gatctgtacc gtcagcgtaa tctttgtagt aacgcacaca
    11041 gcggtagcag gcgatgcagc ggttcatttc gtgagatatg aatggcccca aatcctgatt
    11101 acggtgggta cgtttggtga aacggtagcg acggaagctg tgtccggtca tcacggtcat
    11161 atcctgaaga tggcagttac cgccttcttc acataccgga cagtcgtgcg ggtggttggt
    11221 cattaaccac tcgaccacac tttcacggaa ctgtttcgct tcttcgtcgt caatggaaat
    11281 aaaggtgcca tcggaagccg gtgtcataca ggacatcacc aggcgaccac gcgtgtcttc
    11341 cgcgttttgg tattgcttca ccgcacactg gcggcaagca ccgacgcttc ccagcgccgg
    11401 atgccagcaa aagtaaggaa tatcaaggcc cagagacaga caagcttcca gcaggttgtc
    11461 cgctccgttg acctcgtatt ctttgccgtc tacatgaatt gtagccatta gcatgcttcc
    11521 agttttctcg gtcagggacc gagcgttaat cgaaattcgg ttaccagcgc tctttcagca
    11581 ggttcggctg aatcccatta atcaaatggg tattgctgaa cggctgtttg attcccgcct
    11641 caaattcttc gcggaaatat ttgatggcgc tctgtaacgg ctccactgca ccaggtgcgt
    11701 gggcacagaa agttttaccc gggcctaaga atcgacacag ttgctcaagt gtttcaatat
    11761 cgcccggctg gccttcgcca cgctccagcg cacgcagaat tttcacgctc cacggcagac
    11821 cgtcgcggca cggcgtacac cagccgcagg actcacgggc gaaaaactct tccaggttac
    11881 gcaccagcga caccatgttg atctcatggt caaccgccat cgccagcgcc gtacccagac
    11941 ggctgcccgc tttaccgata ctttcgaatt ccatcggcag atcaaggtgc gcttcggtca
    12001 ggaagtcagt ccccgcgccg cctggctgcc aggctttaaa tttcagacca tcacgcatac
    12061 caccggcgta atcttcgagg atctcgcgtg cggtggtgcc gaacggcagt tcccacagtc
    12121 ccggattttt cacccgaccg gagaagccca tcagcttggt gccagcatct ttacttttcg
    12181 agatgttctg ataccactcc acgccgttag cgaggatcgc cggaacgtta cacagggttt
    12241 cgacgttgtt gacacaggtc ggtttgcccc atacgccgga ggttgccggg aaggggggtt
    12301 tcgagcgtgg gttagcacga cgcccttcta gggagttgat taacgctgtt tcttccccgc
    12361 agatgtagcg ccctgccccg gtatggacga acagttcgaa gtcgaaacct gttcccataa
    12421 tgtttttgcc aagcaagccc gcttcagtgg cttcggcaat ggcgcggcgc agatttactg
    12481 ccgcttcgat atattcgcca cgcaggaaga tgtagccacg gtaagctttc agcgcaaacg
    12541 cggagatgag cataccttcc accagcaggt gcggcagttg ctccatcaac aggcggtctt
    12601 tataggtgcc cggctccatt tcatcggcgt tacacagcag gtaacggatg ttcatggatt
    12661 cgtctttcgg catcaggctc cacttcaggc cagtagaaaa gcccgctccg ccgcgccctt
    12721 tcagaccagc gtcttttacc tgattaacga tttcgtccgg agacagcccg gtcagcgcct
    12781 tacgcgcccc ttcgtaaccg tttttgctgc ggtattcgtc cagccacact ggctgtttgt
    12841 catcgcgcag acgccaggtc agcggatgcg tttcgggagt acggataatg tttttcattt
    12901 ataccgctcc agcagttcag ggatcgcttc cggggtcaga tgcgcgtgag tgtcctcatc
    12961 gatcatcatg tttggccctt tatcacagtt ccccaggcag caagttggca gcagcgtaaa
    13021 gcggccatca aatgtcgttt gccctggttt gatgttcagc tttttctcga gcgccgcctg
    13081 aataccctga tacccgttga tatgacagac cacgctgtcg caataacgga tcacatggcg
    13141 accaaccggc tggcggaaga tctgactgta gaacgttgcc acaccttcga cgtcgcttgc
    13201 cggaataccc agcacatcgg cgatcgcgtg gatcgcacca tccggcaccc agccacgctg
    13261 cttctgaacg attttcagcg cttcaatgga cgccgcacgc gggtcttcgt agtggtgcat
    13321 ctcgtgctca atcgcttcac gctctgccgc actcagctca aaagcctcgg tttgtggttg
    13381 ttgattctcg tgcataatta gcggtccaca tctgacataa caaaatcgat actgcccaga
    13441 taaacaatca ggtcagacac caggctgccg cggatcgccg ccggaatttg ctgcaaatgc
    13501 gcataactcg gcgtgcggat acgagtgcga taactcatgg tgctaccgtc gctggtcagg
    13561 tagtaactgt tgatcccctt ggtcgcctca atcatctgga aagattcatt ggcaggcatc
    13621 accggccccc acgacacttg caggaagtgg gtgatcaggg tttcgatatg ttgcagcgtg
    13681 cgctctttcg gcggcggcgt ggtcagcggg tgatccgctt tgaacgggcc ttccggcatg
    13741 ttgttgaggc actgctcaag aatgcgcaga ctctggcgca gctcttccac tttcagcatt
    13801 acgcgggtgt agcagtcaga aacaccacca ccaaccggga tttcaaagtc gaagttttca
    13861 tagccagaat aaggacgcgc cttacgcacg tcgaagtcga tcccggtagc acgcaggccc
    13921 gcgccagtgg tgccccactc cagcgcctct ttcgcgccat aggcggcaac gccctgggaa
    13981 cgacctttca gaatggtatt ttgcagcgcc gctttctcgt aagacgccag acgtttcggc
    14041 atccagtcga ggaactcacg cagcaggcga tcccagccgc gcggcaggtc gtgcgctacg
    14101 ccgccaatac ggaaccacgc cgggtgcata cggaaacccg tgatcgcttc caccagatcg
    14161 taaattttct gacgatcggt aaaggcgaag aacacgggcg tcattgcgcc gacgtcctga
    14221 ataaaggtcg agatgtacag caggtggctg ttgatacgga acagttcgga gagcataacg
    14281 cgaatgacgt taacgcgatc cggcacggtg atcccggcca gtttctctac cgccagcacg
    14341 taaggcattt cgttaacgca gccgccgagg tattcaatac ggtcggtata cggaatgtag
    14401 ctgtgccagg actggcgctc gcccattttc tccgcaccac ggtggtggta gccgatgtct
    14461 ggtacgcagt cgacaatctc ttcgccgtcg agttgtaaaa cgatacggaa agccccgtgc
    14521 gccgacgggt ggttcggacc gaggttgagg aacatgaagt cctcgttttc ggtgccgcgc
    14581 ttcatccccc actcttccgg tttgaaggtc agggcttcca tctccagatc ctgtttggct
    14641 ttggtcagct caaacggcga gaattcggta gcgcgcgccg ggtaatcttt acgcagcggg
    14701 tgacctttcc aggtttgcgg catcatgatg cggcgcaggt tcgggtgacc gtcgaaagta
    14761 atgccaaaca gatcccaggt ttcacgctca taccagttag cgttcgggaa cagtttggtg
    14821 aaggtcggta cgtgcaggtc gttttctgcc agcgccacct tcagcatgat gtcgcggtta
    14881 cgatcgatag aaatcagatg gtagaaaacg gaaaaatccg cggcaggtaa cccttcgcgg
    14941 tgtgtgcgca gacgttcgtc catgccgtgt aagtcaaaca gcatgacgta aggtttcggc
    15001 agtttcttta agaaatcgcc aacttccagt aattgttcac gcttgatcca cacaacggga
    15061 accccggtgc gagtcgcctg aacagtaaag gcatccggcc caaaacggtt gcgcagttcg
    15121 ccaattaccg gatcatcaag atgatcgcgg gtctgccagg cgggttcttg cgcggttaag
    15181 tcggtcatat tgttcaccat tgcaaatggt ccgtggtgac tgtcggcgca gtaagcttcg
    15241 cgaaatagat ttaggaataa gcgaagaaaa atccctttgc cgacaggcgc aaattaaatc
    15301 tcgtcaggtg tacgcaggtt ggttacggca atgcgttcac cgcgcttgcg ttcgcgctct
    15361 gattgcatat tggcgcgata aacgccctga tcgccaacca cccaggagag cggacgacgt
    15421 tctttgccga tagattcctg caacagcatc agtgcctgca tgtacgcttc aggacgcggc
    15481 gggcagcccg ggatatacac atcaaccggg atgaatttat cgacgccctg cacaacggaa
    15541 taaatatcgt acataccacc agagttggca caggcaccca ttgagataac ccattttggt
    15601 tccagcatct ggtcatacag acgctgaata accggtgcca ttttggtaaa gcaggttcct
    15661 gcaaccacca tcaggtcagc ctgacgcggc gaagcacgca atacttctgc gccaaaacgc
    15721 gccacgtcat gcaccgcggt aaacgaagtc accatctcaa cgtaacagca ggaaagaccg
    15781 aagttatacg gccaaattga gtttttacga ccccagttaa ccatgtcatt gagcttgccc
    15841 ataaacacgt ttttgttaac ttcttgctcc agagggtcgg ttacgatctc ctgcttttgc
    15901 agggggtaac ggtcgttctc accgttggga tctatgcggg tgagcgtata atccatctta
    15961 atgcctcgcg gttagcgttg acgattagcg atactgttcg tttccgggtt catacgctcg
    16021 cggcgtgaac gcgcgggcgt ccagtccagc gcgccaatac gcaccagata aaccagacct
    16081 gccagtaaca caaaaataaa aattgcagct tccacaaagc ctacccagcc gctttcgcgg
    16141 atagaggttg accatgcgaa cagatacagc gcttcaacgt cgaagataac gaagaacatg
    16201 gccaccagat aaaacttggc ggacaggcgt aagcgggcgg agccgaccga gtcgataccg
    16261 gattcaaacg gcacgttttt cgacctcgcg cgtgcgcgac cgcctaaaaa ccaaccacct
    16321 accagcatta ggcaacacag gccaatggca acgataagaa agatagcgaa tgcccagtga
    16381 tgagcgatga cttcagtgga tgttgacata ctcattgctt actcatcaaa agtagcgcca
    16441 gattcactgc tcttcacggc agatggacgc cacatcgatt catggggagg aataaaaaaa
    16501 accttacaat cactgtagaa attcttttat acagctaatt gatgtggtct tttactcctt
    16561 tctataacct tttgtcaact ttaacaaaag tttcttcaca ttagtttaca taatatcaac
    16621 accattagca tttaatgccc tttcacccca gatccttgac gactccagga taattagatg
    16681 ttgttgaatc gtgtccgttg tgaagcaatg gaaaaaatac gggtctattt tgacaggaat
    16741 ttgtgtcgat tcctcccccc aaaagagagt attttcttga tctgtgacac gcttttgtca
    16801 ttccataaca aaaacgcagc aacaaattta cgtatttttt aacatcattg tagcaggtga
    16861 tttttttcag gcgattattt gtgcgttcgg gacgtgaatc tctggtgatt gaaaaatgaa
    16921 cagttttgta cgttctgcac tatgcgagga aggattttta ctaaaaaaaa gccgctgggg
    16981 tttaaaacac ccccagcggc tcgtttttta cactattgtc tcaggaatta tctatcgtcc
    17041 gtcgattact cgatatccct ttcaatcaac aatgaatcat ccccttccgg agcagacatt
    17101 gggctgtatt gccacggatt atggtagctc tccatcgcct gatagatcac ctgggccagc
    17161 tcattattac tggacgggtc atagcacagc aaatattcgg tatcaggtag cggcggtaag
    17221 ccatctactc cactcagcac acgcaggtcc gggctcatca tctcaaccgg ccttgccgtc
    17281 acgccaagac cggctttcac tgccgcacga acggccggaa gcgtcgaggc gacataagcc
    17341 agtcgccatg gaatatctgc tttattaagc gttgccagca ccatatcgcg aaacggactt
    17401 ggatcatcca gcaatacaag agggatcggc tcgccttttt gcaatacgta ttccgctgcg
    17461 cagtaccagt gtgttggcga ggtacgcagg ttcaatgcct taaacgctga aggacgatgg
    17521 gtggttacca tcaaatccac ttcctgggat tccagcattt ctgccatata ggcattacgt
    17581 ttaacgcgga catccagcgc taatttcgga taaaccgaac tcacgcgatt taacaggaaa
    17641 ggtaagatcg tatcggcaga ttcatctgaa gcaccgatag ttaacacgcc ctgaagatta
    17701 ctgaacatta atgatgagca ggcctcatca ttaaaacgca ggattttcct ggcgtaacca
    17761 agaagttgaa tgccatgttc agttaacagt ttgttgcgac cgtgacgagc gaacagttct
    17821 ttcccaacga gttgttccag acgctgcatt tgctgactta cggcggactg agtacgacac
    17881 acagcggcag ctgcggcagc aaaagtgttc agatcggcaa cagcaacaaa tgttctcagc
    17941 agatcgaggt cgaggttaat tatcggacga tttgcactta tcatatatta tcacttactg
    18001 gcggctcata ctgagctggt taatgctgtg cacacacaaa caagcaattc catttgtaat
    18061 gtgcctccct ggcagtttca tccggaaccc ggacgaaagt aaaaatgcat atgagttgca
    18121 ctaaaaaagc gactcacatt gttccgttat aatgcctgaa gtagatcaca gaatatatct
    18181 tcagggatcg catatctatt aagttactca ctcttttcta tttatgacat gcgcgtgttt
    18241 gtataaatgt aaatgtgagt ccttgttcca ctctcgtgca gcatcgctgg tcatacgcga
    18301 acacgtacaa acagcaatgg tgaggcggca tcaagagcag ggatccgtca tttatgcgag
    18361 cattttaccc caaaaacctt ttatttataa gggccattgc gaatcatctg atgcaaagtt
    18421 atgttatgtt aggcaaagta atcttctatt attaataagc acatcaaaac ctttttgaat
    18481 attaaataat aattaattag catcatcctc attcattaat tccgcttaac aatagtttca
    18541 caccttgccc cattacgaca cctcggaaat catcacgctg ttaaactctc cgtaatgcgg
    18601 aaatatcatc atcgcgtttc attagtgaat tcttaaatga ggcattttca cacaattatc
    18661 ttacagataa aaaaaccaga cttacaatta agaatcagaa caattcacta tataacattg
    18721 catgtaaagc atatacacct cattattttg tcatcattaa gttattaaca gcacaatcga
    18781 gccttcccct ctggcaaaat cttattctgc agaccttcaa aacaccgtcc tgggggagta
    18841 cattgttcta agctgacttc cacggcaggg agtggcgata acagcaaaaa aggtcaagat
    18901 tcatgtcccc cattgaaaaa tccagcaaat tagagaatgt ctgttatgac atccgtggtc
    18961 cggtgctgaa agaagcaaaa cgcctggaag aagaaggtaa caaggtactg aaactgaaca
    19021 tcggcaaccc agccccgttc ggttttgacg cgccagatga aatcctcgtt gacgtgatac
    19081 gcaacctgcc taccgctcaa gggtattgcg attccaaagg tctttactcc gcgcgtaaag
    19141 ccatcatgca gcactaccag gctcgtggca tgcgtgatgt taccgtggaa gatatttaca
    19201 tcggcaatgg tgtatcggag cttatcgttc aggcaatgca ggcattgctg aacagcgggg
    19261 acgaaatgtt ggttcctgca ccagattacc cactatggac cgcggcggtt tcgctttcca
    19321 gcggtaaagc ggtgcattat ctttgcgatg aatcctctga ctggttcccg gacctcgatg
    19381 atattcgcgc taaaattacg cctcgtacgc gtgggatcgt tattatcaac ccaaataacc
    19441 caaccggcgc ggtatattcc aaagagcttt taatggagat tgtggagatt gcacgtcagc
    19501 ataatctcat tatcttcgcc gatgaaattt atgacaaaat tctttacgac gacgctgagc
    19561 atcactcaat tgcgccgctg gcacctgacc tgctgaccat tacctttaac ggactgtcga
    19621 aaacgtaccg cgttgcaggc ttccgtcagg ggtggatggt gttgaacggg ccgaaaaaac
    19681 acgccaaagg ctacatcgaa ggtctggaaa tgctggcttc aatgcgcctg tgtgctaacg
    19741 ttcctgcgca acacgccatt cagaccgcgc tgggtggtta tcagagcatc agtgaattta
    19801 ttacccctgg cggtcgtctt tatgagcagc gtaaccgcgc gtgggaactg atcaacgata
    19861 ttccgggcgt ttcctgcgtg aaacctcgtg gtgcgctgta tatgttcccg aaaatcgacg
    19921 ccaaacgctt taacattcac gacgatcaga aaatggtgct ggatttcctg ttgcaggaaa
    19981 aagttctgtt ggtgcaaggg acggcattca actggccgtg gccggatcac ttccgcattg
    20041 tcacgctacc gcgtgtcgat gatatcgagc tgtctttgag caagttcgcg cgtttccttt
    20101 ctggttatca tcagctgtaa tcttaatttc actgccggag attgcatccg gcagcgttat
    20161 cccgccacaa tgacctgatg atgtcatcat acgtaaggtc actatgaaac agagccattt
    20221 ttttgcccat ctctcccgcc tgaaactcat taaccgctgg ccgctaatgc gcaacgtgct
    20281 gacggaaaat gtgtccgaac acagtttgca ggtagcgatg gtcgcccatt cgctggcagc
    20341 tatcaaaaat cgaaaatttg gcggtaatgt caacgccgaa cgtatcgctt tactggcgat
    20401 gtaccacgat gcctcagaag tgccaccggc gatctcccta ctccggtgaa atacttcaat
    20461 tcgcaaatcg ctcaggagta caaggctatt gaaaaaatcg ctcagcaaaa actggtcgat
    20521 atggttccgg aagagctgcg ggatatcttt gcgccgttaa ttgacgagca tgcatatagc
    20581 gatgaagaaa aatcgctggt gaaacaggca gatgcactgt gtgcatatct gaaatgtctg
    20641 gaagaactcg cggccggaaa taatgaattc ttgctggcaa aaacgcgact ggaagcgacg
    20701 cttgaagcgc gtcgcagcca ggagatggac tacttcatgg aagtatttgt tcccagcttc
    20761 catctttcgc tcgatgagat tagccaggat tcaccgctgt aagcagccgg agtctgcgtc
    20821 gcatcaggca ataagcgccg gatgcgacat caggctcttg tcaaaacgga aacagcatcg
    20881 ggatcatcac cacacaaacc gccatcacga taatggtgaa cggtaccccc aacttcacaa
    20941 agtcactgaa gctgtaattt cccggaccta aaaccagtgt gttaacaggt gaagaaaccg
    21001 gtgtcataaa ggcggcggat gctgccatcg ccacgaccat cgcgaatgga taaggcgaca
    21061 cccccatcgt tttggcagca gccagcgcaa tcggagccat caacaccgcc gtcgcggtat
    21121 tagagataaa tagcccaata accgccgaca agacaaacaa acaccccagc atcatatgtg
    21181 gcccgtaacc accgccaatg tccatcagcc ctttcaccgc cagcgcgaca cctcccgttt
    21241 tctgtaatgc cacagcaaac ggcatcatcc caacgatcaa aataatgctc ggccagtgaa
    21301 tggatttata ggcgctttca gcatctatac agcggaattt ccccatcagc aggcaggcga
    21361 tgatagcggc aacaggatta ggaatttcat ctgtcagcat taacgccacc attagcacca
    21421 gacagaaaat ggcatggggt gcctggctgt gcgcgggcga tacttcactc acctcttccg
    21481 gtaagttcag cgctacgaag tcgcggccct gtttggccag cataccgatc agtttccagt
    21541 tacccacaac caggatgata tcgcccagca gcagaggctc atccgccagc gaaccttcca
    21601 gcgccacgcc attgcgcttt agccccacca cattcagtcc gtagcgggta cgaaaaccaa
    21661 tttcgcgcac cgatttacca atcagttctg actcaggaat taatgaaatc tctgccatgc
    21721 ccacatcaag ggcctggtca gaaaaatact cgccgcgcag taccatcggc tccagcaatt
    21781 gctcactaca aaattgccgg agatcgacat cagccgcaga catatcaata agcaaaacgt
    21841 cacgcgcgcg aaattcagaa accccattaa cgttcacgat aacgcgacga aaacgccgcc
    21901 agcgttcaac accgatgacg ttagcgccat aacgctcacg taatttgaga tcatccagcc
    21961 gttgaccaat cattggcgat ccggggcgaa tagccagacg tcgcgcacgc ccggtcagtc
    22021 gatattcacg gataagatcg cgaaaggttc gacgcgtcca gccttcgcgc tgcggggtct
    22081 gggtatcccc tttcagcatg aaacgcatca ctaacatata caaaataccc agcaccagca
    22141 cgaccaggcc aacaggtgtt acgctaaaga aactgaagcc gtgatagcct tcacgcagca
    22201 attcactgtt gactaccagg ttcggcggcg tcgccaccag cgtcatcatg ccgctaatca
    22261 gcccggcaaa acttaacggc atcatcagac gtgacggcga agtttgcata cgcatggcaa
    22321 cgcttaacac cacgggaata aagatagcga caacgccggt tgaactcata aacgcgccaa
    22381 gccccgcgac ggtcagcatc aacaaaacca acattttgat ttcactgttg cccgccactt
    22441 tgaccagcca tgttcccatt acggtggcaa caccggtacg gaccaaacca tcgccaataa
    22501 taaacaaggc ggcaatcagg acaacgttag gatcagaaaa gccggaaaat acttcgggga
    22561 ccgtcagcgt tccgcttaat gcaaacgcga caataacaaa caaagcgacc gcatccatac
    22621 gcactctgcc cgtcgcaaac aagacgatgg caacggccag taatgaaaga acccaaatca
    22681 attcaccgtt cacaacttat ccttgttaat tgagggggat gacttgattc tgccataaaa
    22741 aagccccgac gagacggggc taaatcat
//
LOCUS       DAJVUP010000059        22655 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.059, whole genome shotgun sequence.
ACCESSION   DAJVUP010000059 DAJVUP010000000
VERSION     DAJVUP010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22655
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.059"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..257)
                     /locus_tag="OQQ75_002033"
     CDS             complement(<1..257)
                     /locus_tag="OQQ75_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1976368.1"
                     /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK
                     LALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDC"
     gene            complement(248..718)
                     /locus_tag="OQQ75_002034"
     CDS             complement(248..718)
                     /locus_tag="OQQ75_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1976369.1"
                     /translation="MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTAS
                     QARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEV
                     EMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL"
     gene            complement(903..1697)
                     /gene="thyA"
                     /locus_tag="OQQ75_002035"
     CDS             complement(903..1697)
                     /gene="thyA"
                     /locus_tag="OQQ75_002035"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HCS1976370.1"
                     /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL
                     VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP
                     TPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS
                     CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL
                     QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYAPHPGIKAPVAI"
     gene            complement(1704..2579)
                     /gene="lgt"
                     /locus_tag="OQQ75_002036"
     CDS             complement(1704..2579)
                     /gene="lgt"
                     /locus_tag="OQQ75_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HCS1976371.1"
                     /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR
                     ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF
                     HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF
                     PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI
                     RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI
                     MMVWAYRRSPQQHVS"
     gene            complement(2730..4976)
                     /gene="ptsP"
                     /locus_tag="OQQ75_002037"
     CDS             complement(2730..4976)
                     /gene="ptsP"
                     /locus_tag="OQQ75_002037"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1976372.1"
                     /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD
                     HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV
                     KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT
                     ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE
                     AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI
                     EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT
                     LAELPQDRLVGVVVRDGAANSHAAIMVRALGLPTVMGADIQPSVLHRRTLIVDGYRGE
                     LLVDPEPILLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
                     LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL
                     PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD
                     EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ
                     YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI
                     GLGYRHLSMNGRSVARVKYLLRRIDFAEAENLAQRSLEAQLATEVRHQVAAFMERRGM
                     GGLIRGGL"
     gene            complement(4989..5519)
                     /gene="rppH"
                     /locus_tag="OQQ75_002038"
     CDS             complement(4989..5519)
                     /gene="rppH"
                     /locus_tag="OQQ75_002038"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001655775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HCS1976373.1"
                     /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE
                     SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL
                     QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE
                     NTPKPQNTSAYRRKRG"
     gene            6204..6893
                     /gene="mutH"
                     /locus_tag="OQQ75_002039"
     CDS             6204..6893
                     /gene="mutH"
                     /locus_tag="OQQ75_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HCS1976374.1"
                     /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALAGLVTPENL
                     KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG
                     NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWTPNEEEDRQLREDWEE
                     LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT
                     SALLARHFLIQ"
     gene            6962..7675
                     /locus_tag="OQQ75_002040"
     CDS             6962..7675
                     /locus_tag="OQQ75_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1976375.1"
                     /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ
                     RAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK
                     ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
                     VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM
                     FFSIAVESLNLIRNKKNPL"
     gene            7813..8031
                     /gene="ygdR"
                     /locus_tag="OQQ75_002041"
     CDS             7813..8031
                     /gene="ygdR"
                     /locus_tag="OQQ75_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YgdR"
                     /protein_id="HCS1976376.1"
                     /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD
                     DTGLVSYHDQQGNAMQINRDDVSQIIER"
     gene            8139..9179
                     /locus_tag="OQQ75_002042"
     CDS             8139..9179
                     /locus_tag="OQQ75_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HCS1976377.1"
                     /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI
                     NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD
                     QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
                     LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPSIVTIQNPYSLLNRSFEVG
                     LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKTAGARNTLFSRFTRYSGEQTQKAVAA
                     YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI
                     EAVHQVYTYPAP"
     gene            complement(9211..10404)
                     /gene="lplT"
                     /locus_tag="OQQ75_002043"
     CDS             complement(9211..10404)
                     /gene="lplT"
                     /locus_tag="OQQ75_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HCS1976378.1"
                     /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ
                     FYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP
                     FLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLAD
                     WHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGET
                     RFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNSTPTYLNAMVAIGIVVGAGAAAKL
                     VTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERG
                     KKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWI
                     WQRRH"
     gene            complement(10397..12556)
                     /gene="aas"
                     /locus_tag="OQQ75_002044"
     CDS             complement(10397..12556)
                     /gene="aas"
                     /locus_tag="OQQ75_002044"
                     /EC_number="2.3.1.40"
                     /EC_number="6.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acyl-ACP--phospholipid
                     O-acyltransferase/long-chain-fatty-acid--ACP ligase"
                     /protein_id="HCS1976379.1"
                     /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL
                     LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI
                     FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI
                     TLHILPPTQVAMPDASRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG
                     AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI
                     ARRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE
                     DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA
                     NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL
                     VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL
                     EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG
                     YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV
                     SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTLDKLQQYAREHGVPEL
                     AVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE"
     gene            12945..13976
                     /gene="galR"
                     /locus_tag="OQQ75_002045"
     CDS             12945..13976
                     /gene="galR"
                     /locus_tag="OQQ75_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalR"
                     /protein_id="HCS1976380.1"
                     /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS
                     YHPNANARALAQQTTETVGLIVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ
                     KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD
                     RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGE
                     PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL
                     VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL
                     EASHHATSD"
     gene            complement(13983..15245)
                     /gene="lysA"
                     /locus_tag="OQQ75_002046"
     CDS             complement(13983..15245)
                     /gene="lysA"
                     /locus_tag="OQQ75_002046"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HCS1976381.1"
                     /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK
                     QFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD
                     VIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
                     NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD
                     LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ
                     SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE
                     TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRSLL
                     PEVLFDNGQARLIRRRQTIEELLALELL"
     gene            15367..16302
                     /gene="lysR"
                     /locus_tag="OQQ75_002047"
     CDS             15367..16302
                     /gene="lysR"
                     /locus_tag="OQQ75_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator LysR"
                     /protein_id="HCS1976382.1"
                     /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK
                     VIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP
                     VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTER
                     TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR
                     RMIVETHSAASICAMVRAGVGVSVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLH
                     RPSSALVQAFSEHLQAGLPKLVTSLDAILSSATTA"
     gene            complement(16289..16981)
                     /gene="ygeA"
                     /locus_tag="OQQ75_002048"
     CDS             complement(16289..16981)
                     /gene="ygeA"
                     /locus_tag="OQQ75_002048"
                     /EC_number="5.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HCS1976383.1"
                     /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVD
                     FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL
                     HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI
                     IFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA
                     IHAEDAVAFMLS"
     gene            complement(17110..18525)
                     /gene="araE"
                     /locus_tag="OQQ75_002049"
                     /pseudo
     CDS             complement(17110..18525)
                     /gene="araE"
                     /locus_tag="OQQ75_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311725.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-proton symporter AraE"
     gene            complement(18840..19601)
                     /gene="kduD"
                     /locus_tag="OQQ75_002050"
     CDS             complement(18840..19601)
                     /gene="kduD"
                     /locus_tag="OQQ75_002050"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HCS1976384.1"
                     /translation="MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVE
                     PTETIEQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDAL
                     EFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA
                     SKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRW
                     GLPSDLMGPIVFLASSASDYVNGYTIAVDGGWLAR"
     gene            complement(19631..20467)
                     /gene="kduI"
                     /locus_tag="OQQ75_002051"
     CDS             complement(19631..20467)
                     /gene="kduI"
                     /locus_tag="OQQ75_002051"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HCS1976385.1"
                     /translation="MDVRQSIHSAHAKTLDTQGLHNEFLVEKVFVADEYTMVYSHIDR
                     IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD
                     ALYVGKGAKEVVFASIDTATPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNR
                     RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFH
                     MMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD
                     LR"
     gene            complement(20754..21935)
                     /locus_tag="OQQ75_002052"
     CDS             complement(20754..21935)
                     /locus_tag="OQQ75_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708633.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HCS1976386.1"
                     /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP
                     AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI
                     QCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVT
                     AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMIQSNGQTLVVDTDEQ
                     PCTDASAEGLARLNPSFDSLGSVTAGNALSINDGAAAVMMMSEAKARALNLPVLARIR
                     AFASVGVDPALMGIAPVYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDE
                     RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD
                     E"
     gene            22190..22588
                     /locus_tag="OQQ75_002053"
                     /pseudo
     CDS             22190..22588
                     /locus_tag="OQQ75_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311729.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
BASE COUNT         5809 a         6061 c         5456 g         5329 t
ORIGIN      
        1 atacagtcac cctgtccgac aatttccagc ccttcgccgg tacagatgcc atgacaataa
       61 cccgccctct ggagatgctt cgcgacggta aatacccgca gccagatttc atcttccagc
      121 gccagcttac gggtgctcgt taaactttca cgctgtaacg caggcagaaa gcgtgcagcc
      181 cccagcaaca atacgctact gatcgccata gcaatcaaca cttccagcag agaaaaacct
      241 tgctctttta caggcatcct tctgtttctc cttgctgaca aagccggagt cttccccacg
      301 gcgaaaccac cagccaccac tcgcccgttg agtttttgaa gcgaatatgc ccggcccatg
      361 cggtattgcg caggccaaag aaagcaagcg aaggtgtcag gtcgctcatt tcgacttcgg
      421 gccagcgtgg cacaaagacc aatggtgaac tgccatgaca ggtattggcc ccagcagcgg
      481 aactcacaag gcaccataac gtcccctccc tgataacgct gatactgtgg tcgcggttat
      541 gccagttggc atcttcacgt aaatagagca aatagtcccg cgcctggctg gcggtttgcc
      601 atagccgttg cgactgctgc cagtattgcc agccatagag tccacttgcg cttagcatga
      661 ccaaaatcag catcgcgacc agcgtttcaa tcagcgtata accacgttgt gttttcatgc
      721 cggcagtatg gagcgaggag aaaaaaagac gagggccagt ttctatttct tcggcgcatc
      781 ttccggacta tttacgccgt tgcaggacgt tgcaaaattt cgggaaggtg tctcgaagaa
      841 tttaatggag ggtaaaaaaa accgacgcac actagcgtcg gctctggcag gatgtttcgt
      901 aattagatag ccaccggcgc tttaatgccc ggatgcggag cgtagccttc aatctcaaaa
      961 tcttcgaaac ggtagtcgaa gatggattcg ggtttacgtt tgataatcaa cttcggcagc
     1021 ggacgcggtt cgcggcttaa ttgcagatga gtttgatcca tatgattgct gtacaggtgc
     1081 gtgtcgcccc ccgtccagac aaaatcgccc acttccagat cacactgctg cgccatcata
     1141 tgcaccagta acgcgtagct ggcaatgtta aacggcaggc cgaggaaaac gtcacaggag
     1201 cgctgataaa gctggcaaga gagtttgccg tctgccacat agaactggaa gaacgcatgg
     1261 cacggtgcca gcgccatttt atccagttcg cctacgttcc acgctgaaac aataatgcgg
     1321 cgcgaatccg ggtcgttttt cagctggttc agtaccgtag tgatctggtc aatatgacga
     1381 ccatccggcg ttggccaggc gcgccactgt ttaccataca ctggcccgag gtcgccgttt
     1441 tcatcggccc attcgtccca gatggtgaca ttgttttcgt gtagataagc aatgttagtg
     1501 tcgccctgca gaaaccacag cagttcatgg atgatggaac gcaggtggca acgtttagtt
     1561 gtcaccagcg ggaatccatc ctgcaggtta aaacgcatct gatgaccaaa aatggaaagc
     1621 gttccggttc cggtacggtc gtttttctgt gtgccttcgt cgagcacttt ttgcatcagt
     1681 tctaaatact gtttcatggt tcctcaggaa acgtgttgct gtgggctgcg acgatatgcc
     1741 cagaccatca tgatcacacc cgcgacaatc atcgggatgg aaagaatttg tcccatgctg
     1801 atgtactgca cccaggcacc agtaaactgc gcgtcgggct ggcggaaaaa ctcaacaatg
     1861 atgcgaaacg cgccgtaacc aatcaggaac aaacctgaga cagctcccat tgggcgcggt
     1921 ttacgaatat acaggttgag gataataaac agcactacac cttccagcaa cagctcgtaa
     1981 agctgtgatg ggtggcgcgg cagcacaccg taagtatcga aaatggattg ccactgcggg
     2041 ttggtttgca gcagcaaaat atcttctgta cgggagccag ggaacagcat ggcaaacggg
     2101 aagttcgggt caacgcggcc ccacaattca ccgttaataa agttgcccag acgcccggca
     2161 ccaagaccaa acggaatgag tggtgcgata aaatcagaga cctggaagaa ggaacgttta
     2221 gtacggcggg cgaagataat catcaccacg ataacgccaa tcaggccgcc gtggaaggac
     2281 atgccgccgt cccagacacg gaacagatac agcggatcgg ccataaactg cgggaagttg
     2341 tagaacagaa cataaccaat acgtccaccg aggaagacgc cgaggaagcc cgcatagagt
     2401 aagttttcaa cttcattttt ggtccagcca ctgcccggac gattcgcccg acgtgttgcc
     2461 agccacattg caaaaatgaa acccaccaga tacatcaggc cgtaccagtg aagcgccacg
     2521 ggtcctattg agaaaatgac cggatcaaac tccggaaaat gcagatagct actggtcatc
     2581 tgtcaccaca agttcttgtt atttcgctga aagagaacag cgattgaaat gcgcgccgca
     2641 ggtttcaggc gctccaaagg tgcgaataat agcacaaggg gacctggctg gttgccggat
     2701 accgttaaaa gatatgtata tgatccgcgc tataaccctc cgcgaatcag cccgcccatg
     2761 ccgcgacgct ccataaaggc tgcaacctga tgacgaactt cggtcgccag ttgcgcttcc
     2821 agactacgct gcgcaagatt ttctgcttcg gcaaaatcaa tgcgccgcag caggtatttt
     2881 acccgcgcta cagaacgtcc gttcatagac agatggcgat acccaagccc aatgaggatt
     2941 gccacgcaca tgggatcgcc cgccatttca ccgcacaaac ggagatcgat accatgtatt
     3001 tccgcttccc gggcgatcat tgccagagct cgtaacattg caggatgaag gctgtcataa
     3061 atgttcgcca cccgggtatt gttgcgatca acggccagaa tgtattgagt cagatcgttg
     3121 gtgccaacag agatgaaatc gacccgcttt gccagatgcg gcagcataaa taccattgac
     3181 ggtacttcca gcatgatgcc gatacgtggt ttgggaattt cgtaaccgat catctcctcg
     3241 acttcacgtc cggcacgttc aatcaggcgg cgtgcttcgt caacttcatc gaggctggtg
     3301 accatcggca acagaatatt caggttgccc gtagcggcat tagcacgcag catcgcccgc
     3361 acctggatca agaagatctc cggctgatcg agcgtaatgc gaatcccacg ccaacccagg
     3421 catggattct cttcgctgat cggcatgtaa ggcagctgct tatctgctcc gacatccagc
     3481 gtacgcaagg tgacgggttt atcattgaac atttgcagca tcccctgata ctgcgccacc
     3541 tgttcttctt ccgacgggaa accactttgc agcatgaatg ggatttcagt gcgataaaga
     3601 ccgatgccat caatacggct gcccagtttt tcttcatgtt ccgggcttaa accagcattg
     3661 agcatgactt ttatacgctc accgcttttt aactgcgcgg gtaaattgac gtcatcttcc
     3721 gccagacggc taagctcaat ctcttcacta attagccgct gatattcttg cagcagtatc
     3781 ggctccggat cgaccagcaa ttcaccgcga tagccatcaa cgatcagcgt cctacgatgc
     3841 agcaccgaag gctgaatatc cgcgcccatc acggtaggga gccccagcgc acgtaccatg
     3901 atcgcagcat gggagttggc tgcgccatct cgcacgacaa caccgactaa gcgatcctgg
     3961 ggcagctcag caagagttgt cgctgacagt tcatctgcca ccagaatgaa acgttccggc
     4021 caggcgttcg gcccttgatt agcgtcatca agatgaaaca gcaatcgctg acccagcgca
     4081 cgtaaatcgc cagcccgctc tttgagatag ttatcgctta gcgcggcaaa ctgttcggca
     4141 aatttttcaa tgaccgtttt taccgcccac tctgccaccg agcctttatc aacctcggca
     4201 aacaattcgc gacgcagccg ggtgtccgaa agcaggtgcg agtaaagatc gaaaatagcc
     4261 gccgtttctt tttgtgctcc ggcggcaaag cgtttgctgt agcggcgaaa ctcgtttgcc
     4321 gcttcttcca gcgccccggt caatcgttcg cgttccagag ccggatccag cgttgatgcc
     4381 tgatacacct gttccattaa aggtaacgtg gcatcctgcc agccttcggc aatcgccaca
     4441 ccaggtgctg ccggtaatgc gcggattcgc gtctggcgat attgcccaaa caaggcagtc
     4501 aactgcgact gagaaagaat agctgccatc tgggtggcaa gcgtcaccag gaaggattct
     4561 tcactttcgt catactggcg caactctcgt tgctgtacca ccagtacacc aagcaactgg
     4621 cgacgttgaa taattggtac gcctaaaaac gcgcggaaac gttcttcttt tacggagggg
     4681 atgtatttga agctggggtg cttttgcgca tctgcaaggt ttatcggttc cgccagcctg
     4741 ccaaccaggc cgacgatccc ttcatcaaac gcgagcgtta cagtgcgacc gcgtggtttt
     4801 ttcagccccc gggtcgccat caggtagtaa caacgtcgat catgatcggc caggtagacc
     4861 gaacagacct cggtatccat cgcaagacag atgtcggtaa ccagaatatt taacgcctca
     4921 ttcaggcgtg gtgcgctggc taccttttcg actatttcgc gcaggcgagt gagcataatt
     4981 ggcgtgactt aacctctttt acgtcgataa gcagatgtgt tttgtggttt tggcgtattt
     5041 tcctgcagtg acatcaccac actcgcgaac tctttcatta ccctacggta gacatcacgt
     5101 ttaaatgaca ccacctgtct gaccggatac cagtaactta cccatcgcca gccgtcaaac
     5161 tctggtgtac tgctggtttg catattgatt tctgcatcgc cgctcaccag ctgcaagaga
     5221 aaccattttt gtttttggcc gatacaaacc ggcttcgtgt cccaacgcac caaacgtttc
     5281 ggtaatttgt agcgcaacca gttacgcgtt gaagcaagga ttcgaacgtc tttgcggctt
     5341 aatcctactt cttcaaacaa ttcacggtac atcgcctgct ctgcggattc tccggggttg
     5401 attccgcctt gcggaaattg ccaggagtgc tgaccaaatc gccgggccca cattacctgc
     5461 ccctggcgat tacaaatcac gatacctacg tttgggcggt agccatcgtc atcaatcacc
     5521 ggactacctc aaaataaagc tttatatacg aatgattgtt tcatactcca ggaagacggt
     5581 aaaccactct ctgcagggca ttacacacta ataacaattg aataactcac agttatgtgc
     5641 agagttataa acagaggaag gggtggatag ccgtttttat tcaccttttc tgtggataga
     5701 gttgtgaaga actacggaat tactacggga aaacccggag cattctgaat aagcccgata
     5761 taggcatttt aaaatattca ttataagtca atgcattaca tgtaatttga gtaatgaaaa
     5821 agagtaattc gtgacccagg tcacacctct catttacggg ttggcgaaag atcaaccaat
     5881 gccgtattta tccacagaat gtgccactaa gttaagcact gaaccactaa aaactggagt
     5941 ttcgtcgcac gtcaaggctg taaatggaaa cagtagtgga ggtttttcac agttatccca
     6001 gctttctgtg gataacatgg tgtaagatcc tgtttatttt cagtgaccag atttggaaaa
     6061 cctattgcag tgctgcgcaa ctcgattatc ggcagcctaa aaagcaatat aaatcagaga
     6121 attgaacaac acatgtggaa aaagttacac tgcgaatatt cggtacataa ttgctgtttg
     6181 ttttttaacc aaggtatcat gacatgtccc aacctcgccc actgctctct cctcccgaaa
     6241 ctgaagaaca gttgttagcg caagcacagc aactttctgg ttatacattg ggagaactgg
     6301 cggcacttgc cgggctggtt acgccagaga atttaaaacg cgataagggc tggattggcg
     6361 tgttactgga gatctggcta ggtgccagcg cagggagtaa acctgagcaa gattttgctg
     6421 ctctgggcgt ggaacttaaa actatccctg tggatagtct tggtcgtccg ctggaaacaa
     6481 cattcgtttg tgttgccccg ttaacgggta atagcggggt gacctgggaa accagccacg
     6541 tgcgccacaa gctcaaacgc gtactgtgga taccggttga aggcgagcgc agcatcccgc
     6601 tggcgcagcg tcgcgtagga tccccgttgc tgtggacccc gaatgaagag gaagaccgac
     6661 agctacgcga agactgggaa gaattaatgg atatgattgt tctcggtcag gttgagcgga
     6721 tcaccgctcg tcacggggaa tatttacaga taagaccgaa agcagcgaat gcgaaagcgc
     6781 ttaccgaagc cattggtgcc cggggcgaac ggattctgac gctgccacgc ggcttttatt
     6841 tgaagaagaa tttcaccagt gcactactgg cccgtcattt tctgatccag tagccatcgc
     6901 tttgacctgc cgctttccgg gcatataatt accgcttcat ttttttggca gggcttttta
     6961 gatgttattt gcatggataa ccgatcctaa cgcctggctt gcgctcggta cgctgacgct
     7021 gctggagatc gttcttggga tcgacaatat tattttcctt tctctggtgg tggcaaagct
     7081 tcccacagca caacgtgctc atgcgcgccg tctggggttg gcgggagcca tggttatgcg
     7141 tctggcgctg ctggcatcaa tcgcctgggt tacgcgcctg acaaatccgc tttttacaat
     7201 attcagtcag gaaatttctg cccgtgattt gattctgctt ctgggtggct tgttccttat
     7261 ctggaaagcc agcaaggaaa tccacgaatc cattgaaggt gaagaagaag ggctgaaaac
     7321 acgcgtttca tcattcctcg gcgctatcgt gcagattatg ctgctggata ttatctttag
     7381 cctcgactcg gtgattacgg ctgtgggtct gtcagatcac ctgtttatta tgatggcagc
     7441 cgtggtgatt gccgtaggcg tgatgatgtt cgccgcgcgc tcgattggtg attttgtcga
     7501 acgccatcct tcggtaaaaa tgctggcgct ctctttcctg attctggtgg gctttaccct
     7561 gattctggaa agtttcgaca tccacgtacc gaaaggttac atctacttcg cgatgttctt
     7621 ctctattgcg gttgaaagcc tcaacttgat tcgcaacaaa aagaatccgc tctgatactc
     7681 cgtacgctct cctgcgggag ggcgtactca ctccttttac cctcacagtt taagattttc
     7741 ctgctttcaa gatatataac gtcgttttat aaacagacta ttatcatagg taggccaaat
     7801 gaggataacc ggatgaaaaa atgggcagta ataatttctg cagtcggact ggcgtttgct
     7861 gtttccgggt gttccagtga ttacgtcatg gcgaccaaag atggccgtat gattttgacc
     7921 gatggaaaac ctgaaattga tgatgatacc gggctggtga gttatcacga tcagcaaggt
     7981 aacgcgatgc aaattaaccg tgatgatgtt tcgcaaatta ttgaacgtta acaaataagg
     8041 tcagcatccg gctggcctta agatttttct ctttcccttt tcccttccct ctgccatttt
     8101 tatattcctt atgtcgtgat tataaaaagg aaacggctat gcaatatcac cgtatacccc
     8161 acagttcgct ggaagtcagc acgctggggc ttggcacgat gacgtttggt gaacagaaca
     8221 gcgaagccga cgcccacgca caactcgact atgccgtcgc tcagggcatt aaccttatcg
     8281 acgttgccga aatgtaccca gtacctccgc gccccgaaac gcaagggtta accgaaacct
     8341 acgtcggcaa ctggctggcg aaacatggca gccgcgaaaa gttaattatc gcctccaaag
     8401 tgagcggacc gtcgcgcaat aatgacaagg gcatccgccc ggatcaggcg ctggatcgga
     8461 agaatatccg cgaagcgctg catgacagcc tcaagcgcct acagactgat tacctcgatc
     8521 tttatcaggt gcactggccg cagcgcccga ccaactgctt cggcaaactc ggttatagct
     8581 ggacggattc tgcgcctgcg gtttcgctgc tggatacgct ggacgcactg gcagagtacc
     8641 aacgcgcggg aaaaattcgt tatatcggcg tgtcgaacga aactgcattt ggcgtaatgc
     8701 gctacctgca tctggcggac aaacacgatc tgccgagtat tgtcaccatt cagaaccctt
     8761 acagtctgtt aaaccgcagt tttgaagtag gtctggcaga agtcagccag tatgaagggg
     8821 tcgaactgct ggcctattca tgcctgggtt tcggcacgct gaccgggaaa tatctcaatg
     8881 gtgcaaaaac cgctggcgca cgtaatacgc tctttagtcg gttcacccgc tatagcggtg
     8941 agcaaacgca aaaagccgtc gcggcgtatg ttgatatcgc cagacgtcat ggcctggacc
     9001 ctgctcagat ggcgctcgcg tttgtacgcc gtcaaccgtt tgttgccagc actctgctgg
     9061 gcgcaaccac gatggatcag ctgaaaacta acatcgaaag tttgcatctg gagttaagcg
     9121 aagacgtatt agctgaaatt gaagcggtgc atcaggttta tacttatccg gcaccataag
     9181 attaacgccg gttaaaaccg gcgttaaata ttaatgacgg cgctgccaga tccacagcgc
     9241 cgttattgcc agcgcaaaca gcgcaccgaa gccaatgcca atgggcacga ccgggatgcc
     9301 taccattacc gccagcgagt aaatgcccag catcaacaac atggcgctgt tttcgccaag
     9361 gttttgtact gcaatcgcat tccccgcccc gacgcttttt ttaccccgct cctgtagcaa
     9421 cgcattgagc ggaacgacaa aaaagccccc catcacgcca atcagcatca acaaggcata
     9481 ggctggcagc agctcgtgtt gcagggaaaa aatcagtacc accacgccaa tcaaaatccc
     9541 ggctggcata cagcgtgaca cggtttccag cgtaactaac ttcgctgccg cacctgcgcc
     9601 aaccacgata ccaatcgcta ccatcgcgtt gagataggtg ggcgtagagt tatcggtaat
     9661 gcccagcgcc accggtaccc acagcaccaa caggaaacgc agcgtgacac ccgctcccca
     9721 gaataaactg gtgcccacca gcgaaaaacg cgtttcacca ttgcgccata gcgaggtgca
     9781 ggcattcagg aaactgcggg tcatgttgat gagattccaa gactgccccg gacgcgccgc
     9841 cgccagtttg ggaatgtaga tattggcaac gaccgcacca ccgtaggcca gtgcgcatgc
     9901 ggccagggcg acgaggacat gccagtcagc cagcacacca ccggctacgg aaccgagcaa
     9961 aatcgccgct atggtagaag cttccattaa accgttagct ttcactaact tactacccgt
    10021 ggttaattcg ccgagaatac cgtatttcgc cggtgaatag gctgcagcac caacccccac
    10081 cagcgtatag ccgagaaacg gattgatacc aaagcagata ctggctgcgc ccagcagctt
    10141 caggccgttg gcaaacatca tcacccggcc tttggcgaag ctatccgcca cctgcccgac
    10201 aaacggcgca aaaagaatgt aagcacctac aaacaccatt tgcaggatgg gctggctcca
    10261 ctccggatag aactgcgctt tcagtaacgc cagagtggca aacagtaggg cattatcgcc
    10321 aaacgcagag agaaactgcg ccacgataac cgctttcatc cccttcgacc acaacgaagt
    10381 gttagtgtgc actgactcac tcatcgtgtt gttccgcttc gtctacccag cttttcaacg
    10441 tgacaaagtc aggtttgccg ctgccaagta atggcatctg tttcagatag cgaatatcgc
    10501 gcggtacagc aagctccggc acgccgtgct cgcgggcata ctgttgcaac ttatcgagcg
    10561 tcagttcgtt atctgtggtg aaaagcacca gtgcctcgcc tttgctggca tcgctcttaa
    10621 tcgcagtggc atggacttta tctggcgaaa caccaagtgc cagttgttcc accatttcca
    10681 gcgacaccat ttcgcctgca attttggcaa agcgttttgc gcggccctga atctgcacaa
    10741 agccctgctc gtcaaaacgc acaatatcgc cagtgtcata ccagccgcgc tccatttcgc
    10801 cgcgaacatt ctcggcggtg ggcacttcca gtacacctgg cttctccacc cgcagatagc
    10861 cgttcattat gttcggccct ttcagttgca ggcgtccgcc ctcttcgata ccaggaaccg
    10921 acaacaggcg cgcatccatt cctggtagaa tacgccctac cgtaccgggt ttcgccgcca
    10981 tcggtacgtt gatagaaacg acaggcgcgc actcggttac accatagcct tcaaggatgc
    11041 gcaggccaaa tttatcctgc caaagctgtt tggtactttc ttgtagtttt tctgcgcctg
    11101 ccaccacata gcgtagacga tagaagtcat acgggttggc gaaacgcgcg tagtgaccga
    11161 ggaaagtcga ggtaccgaac aacacggtgc aactgcggtc atacaccaac tccggcacaa
    11221 tgcggtaatg cagcgggctt ggataaagga acacttctgc acctgtaagc agtggcgtaa
    11281 acaggcctac cgtcagccca aaggagtgaa acagcggtaa tgccgacata aagcgatcgt
    11341 tggtggtgaa gtcggcaatc gttttaatct gctcgacgtt cgccagaatg cttttatggc
    11401 tatggacgac gccttttgga tggccttcag aaccggaggt aaagaggatc agcgcctctt
    11461 cttccggctg ctgttttacc tgcgccaggc gcggcatcag caaatgagcg aagatccata
    11521 ctttgtcggc agtggtgaca tctgctttta aatcttccag atagacccag cgcacctgag
    11581 taagttgctc cggcagatgc cagagtttgc ctttatcgag aaactggcgg gaagtgaaga
    11641 tggttttgat ttcagccgcc gtaatagcac tggtcagccc ttttacccca gcagtgtagt
    11701 tcatcattgc gggaatgcgg cgacgcgcga tggccccaaa aatcactgcc gcactgatgc
    11761 ctgcattggg cagcattaag ccgatgcgtt cgccttcaac actgtatttt tcaaggatgc
    11821 gtccaacaaa cagcgttttc gtaagcaatt tgcgatagga gtctggggta aagttgacgt
    11881 cttcgacaca tttcttcccg gctccgaagc ggtacattgc actcagtaaa gattcgtaca
    11941 gagtttcacg cgggcgcacc gccatacgcg cttccatcat tatttgatgc agcatttcgc
    12001 cagcgatttt gcgacggtca cgggcacgcg acgcatccgg catcgccacc tgcgttggag
    12061 gcaaaatatg cagagtaatt tgcgggaaca agcgacgttt aaccagacct ttcaggcggc
    12121 tgaagtgcgt aagttccgcc ccttcaatac gcacaggaat aaccgttgca ccagacttcg
    12181 ccgcgacaaa acccgcgcca tcgtagattt tcatcagcga gcctgtagtg gtgatgcgtc
    12241 cttcagggaa aatcaccact ggtcggccct gttccaccag acgtaccaga tgtttaatag
    12301 ccataggttg cgtcgggtcg agaggaacaa agtcgataaa tgatttcagc caacgcatat
    12361 accactgttg gcttattgag gtgtaaacgg caaacactgg acgcacaggt aaaaacagtc
    12421 caagcaaaat gccatcaata aaagagacgt gattaggcgt aattagaacg cgctcgccct
    12481 tcagtgcctg ggtgtcaccc gtaacgcgaa cgcgatacaa aacacggcac aaatttcgaa
    12541 aaaagctaaa aagcattcca actccctttg ctctgattca gtaaaagcga atggagggag
    12601 attacacgag ataaagaacg cgagcgacag taaattaggt gcgaaaaaaa acctgcgcat
    12661 ccgcgcaggt tggtgcaaga gacagggtac gaagagcgta ccgaataatc tcaccaatca
    12721 atacctctgg gatcaccact ttagcaacct gaagccaaac gccaccagcg gtcaatcgca
    12781 acagcgtttc gcaaagtgta accaaaggtt tgcaatctct ttttttgtct tacttatttg
    12841 cgtttggctc acattcccac gatgaaaaca cgccactcct tgaaccaacg ggcgttttcc
    12901 gtaacactga aagaatgtaa gcgtttaccc actaaggtat tttcatggcg accataaagg
    12961 atgtagcccg actggcaggc gtttcagtcg ccaccgtttc ccgcgtcatt aataattcac
    13021 ccaaagccag cgaagcttcc cggctggctg tgcatagtgc aatggagtct cttagctatc
    13081 acccgaacgc caacgcccgt gcgctggcgc agcagaccac tgaaacggtc ggtctgatcg
    13141 ttggtgatgt ttccgatccg tttttcggtg caatggtgaa agcggtcgaa caggtggctt
    13201 atcacaccgg taatttctta ttgattggca acggttacca caacgaacaa aaagagcgtc
    13261 aggctattga gcaactgatc cgccatcgct gtgctgcgtt ggtcgtccat gccaaaatga
    13321 tcccggatgc cgatttagcc tcattaatga aacaaatgcc cggtatggtg ctgatcaacc
    13381 gtatcctgcc tggctttgaa aaccgttgta ttgctcttga cgatcgttac ggtgcctggc
    13441 tggcaacgcg tcatttaatt cagcaaggtc atacccgcat tggttatctg tgctctaacc
    13501 actctatttc tgacgccgaa gatcgtctgc aagggtatta cgatgccctt gctgaaagtg
    13561 gtattgcggc caatgaccgg ctggtgacat ttggcgaacc agacgaaagc ggcggcgaac
    13621 aggcaatgac cgagcttttg ggacgaggaa gaaatttcac tgcggtagcc tgttataacg
    13681 attcaatggc ggcgggtgcg atgggcgttc tcaatgataa tggtattgat gtaccgggtg
    13741 agatttcgtt aattggcttt gatgatgtgc tggtgtcacg ctatgtgcgt ccgcgcctga
    13801 ccaccgtgcg ttacccaatc gtgacgatgg cgacccaggc tgccgaactg gctttggcgc
    13861 tggcggataa tcgccctctc ccggaaatca ctaatgtctt tagtccgacg ctggtacgtc
    13921 gtcattcagt gtcaactccg tcgctggagg caagtcatca tgcaaccagc gactaaccgc
    13981 agttaaagca attccagcgc cagtaattct tcgatggtct ggcgacggcg aatcaaccgc
    14041 gcctgaccat tatcaaacag aacttctggt aacagcgaac ggctattgta gttggatgac
    14101 attgatgcgc catatgcccc tgtatcatgc agtaccagat aatcacctgc cttcacttcc
    14161 ggcaaggcgc gggtttcaac atttccccct tcctgctggg taaagacatc gcccgattca
    14221 cataacggtc cggcgacgac ggtttccacc gttggcgcgt gttccagaga acgaccatca
    14281 gctgccaggg cactgatatg gtggtaacta ccgtacattg ccgggcgcat cagatcgttg
    14341 aacccggcat caaccagcac aaagtggcgg ctccccattt gtttgacgct ccgcacctga
    14401 gtaattaata cgccagactg cgctaccagg aagcgacccg gttcaatttc cagtttcaca
    14461 gggtggccca aatggcgggc gatttgctca cgcgcggcat tccacagacc ataataatgt
    14521 tcggtatcaa ccgcctcttc accctgttga taaggaacag aaagcccacc gcccgcagaa
    14581 atagcctgta aatcctgacc gaattcgatg acctgacgca ccatagcacc acacacctgt
    14641 tccagatggg cataatcaac gccagaacca atgtgcatgt gaatgccgac cagctgcaga
    14701 tgatgacgtt gtatcacgtc cagtgcggcg ggcagatcgg tgtaccagat accgtgcttg
    14761 ctgttttcgc caccggtatt ggttttttgg ctatgtccgt gaccaaaccc cggattaacg
    14821 cgcagccata cccgatgccc tggcgaaacc tggcccagtt ggtcgagcat atcaacagaa
    14881 cccgcattca ccggaatttg caattcactg acgcgttcaa gcgtcgcctg atcgataaca
    14941 tctgccgtaa aaacaatatc atcggggtgc gtttgcggat tgtaacccgc cgccaacgca
    15001 cgctctattt cgcctaacga gacggaatcc actttcacgc cctgctcacg cattaagcgc
    15061 aaaatatgaa tattggaaca ggctttctgt gcaaagcgca ccacatcaaa ctgtttcagc
    15121 gctgcaatct gccgacgaat aatttgcgca tcgtagaccc acaccgggca gccaaattca
    15181 gcgggcaaac gcagcagatt ttcggcggtg agatcggtat cggtgctgaa cagtgaatgt
    15241 ggcataacaa actccagata agtgcttttt tatgattacg ccacatcata aaaagaataa
    15301 aaaatatcga tttatgtcga gtctatgcaa aaatgatatg gattaccgga ttgcgagaga
    15361 gcgctaatgg ccgccgttaa cttacgtcat attgaaattt ttcatgcggt aatgaccgcc
    15421 ggaagcctga ctgaggcggc acacctgcta cacacctcac agccaaccgt cagccgcgaa
    15481 cttgcgcgct ttgagaaggt gatcgggctg aaattgtttg agcgcgtacg tgggcgatta
    15541 catcctaccg tgcaaggact gcgtctgttt gaagaagtgc aacgatcctg gtacggactg
    15601 gatcgaattg tcagcgctgc agaaagtctg cgcgagtttc gccagggaga actgtctatt
    15661 gcctgcctgc cggtcttttc gcaatctttt ttaccgcagc tcctgcaacc ctttctggca
    15721 cgttatcccg atgtcagctt aaatatcgtg ccccaggaat caccgctact tgaagagtgg
    15781 ctctcggccc agcgtcatga tttaggactc actgagacac tccatacgcc tgcgggaaca
    15841 gaacgtaccg aattactctc tttagatgaa gtgtgtgtgt tacctccggg tcatccgctg
    15901 gcggtaaaaa aggtattaac gccggatgat tttcagggtg agaactacat cagcctttcc
    15961 cgtactgaca gctatcgcca gttgctggat cagctattta ctgaacatca ggttaaacga
    16021 cgcatgatcg tagaaaccca cagcgccgcg tcaatctgcg caatggtacg ggcgggggta
    16081 ggtgtttcgg tggttaaccc gctcaccgca ctggattatg cggcaagcgg tttagtggtg
    16141 cggcggttca gtattgcggt tccgttcaca gtcagcctga tccgccccct gcaccgcccg
    16201 tcatcagcgc tggtgcaggc gtttagtgag catttacaag cggggttacc gaaactggtc
    16261 acttctcttg acgctatttt gtcgtcagct acgacagcat aaaagcgaca gcatcctcgg
    16321 catggatcgc cgcagtatca aacacaggca aaacactgcg ctcttctggc accagtaaac
    16381 caatttctgt gcagccaaaa atgacgccct gtgcgccctg ttctgcaagg cgagcaatca
    16441 cttgcgcata ataagcgcgt gacgcttcgg taaattgccc cagacacagt tcttcaaaaa
    16501 taatctgatt aattttcgcc cgttcatccg cttcaggaat aagacaattg atggaaaatt
    16561 gttccgtcag ccgcccgcga taaaaatcct gttccatggt gtaacgcgta cccagcagcg
    16621 ccacacgagt cattccggcc ccggtaattg cacgtccggt ggcatccgca atgtgtaaga
    16681 aaggcagagt gcaacgtgac tcaatggcat ccgccacttt atgcatcgta ttggtacata
    16741 acacaatacc ttctgcgccc gcccgctgta agccaagcgc cgcctcagcc agaatgtccc
    16801 cggttttatc ccattccccg cgacgctggc actcttctat ttcatgaaaa tcgacgctat
    16861 gtagcagcac ttgcgcagag tgaagcccac caagccgctg tttaatgcct tcatttatca
    16921 aacgatagta aggaatggtg gattcccagc tcattcctcc cagcaaacca attgttttca
    16981 ttcctctctc ctgatgtgtg ttaccgcaac aaggctgaat aaggaacgag acaaacgcct
    17041 caacggccaa gtgcccaatc tctattaacg aaaaaagggc cggatgtaca gcacatccgg
    17101 cccgtgaaat cagatgccga tatttctcaa cttctcgcct gccatcagtt tgcgttcgat
    17161 atgttccagc gtgacatttt tggtttccgg aatgagccag aaagtgatgc ccacaaacgc
    17221 aatgttcagc gcagtgtaga gccagaacgt accggcagcg ccaatgctgt cgagcagcgt
    17281 caggaaggtc gccgataatc atattcgaca cccagttcgt ggtggtcgaa caggtaatac
    17341 cgaaatcgcg gcatttcagc ggctgaattt cagagcacag gatccacacc actggcgcgg
    17401 cgctcatcgc ataaccggca atacacatca tcgtcatgcc aacagagagc caggacaatc
    17461 cactggaagc cgtaccgtta tcaaactgca tcaggcaata gcccagcacc agagtgccta
    17521 acgccatcac gctgaaacca attttcagag ccggtttacc cctgctttat ctaccgtaaa
    17581 caccgcaata aaggtggcga acataaaggt cagccctacg accagagtcg caatcatctg
    17641 ttgttctgtg gtcgtaaagc ccgccatttt gaagatacgc ggcgcgtagt acatgatgat
    17701 gttcataccg gtaaactgct gcatcgcctg caacaacata ccgagaaaca cagcacgacg
    17761 gacgttacgg ttgatcttaa acagtgccca accgccctgt tttaacttca ggctttcacg
    17821 aatttcgttg agttcttctc gcgctttttc cgacgtatcg cgcagcatac gcaatacttc
    17881 ttccgcctca atatgacgcc ccttttccgc caaccagcgc gggctatttg gcaggaagac
    17941 caccagaata atcagcagaa ctgctggtaa agcaagaacc cccaacattg cgcgccagtt
    18001 accgctataa ctgaacgctg tatcggataa aaacgccagc acgatgccga gtgtgaccat
    18061 caactggtac atactgatca tcttaccgcg aacgttttca cttgccattt cagaaagata
    18121 cagaggagcg gtgtaagacg cgatcccgac agcaatgccc agccccacac gagcggcgat
    18181 taacatctct acgctggtcg caaaagcgga ccctatagaa ccgagtacaa acaggatggc
    18241 ccccgccatc aggctgtatt tacgccccag gcggaacgac agccaaccat taaacagcgc
    18301 accaattgct gcgccgagca tcatgctact aaccacccat tcctgcaaat gactggtcag
    18361 cacaaagtga tcggtaatga acggcaacgc tccggcgatt acgccgatat caagaccaaa
    18421 taacaatcct gcgaccgcag cagctaccga aacaaacata ttcatacgcc gcgtatcccg
    18481 caaagaacgt ggcgttaaag cagattccgt attgatagta accatttttt cctgccagca
    18541 gagagtaaga catagtgaaa aaatacgtga acaactcacg caggtgtcag gtcggaaaca
    18601 gcataaatat ggattaaatt gctgcgacat gtcgttatgt gatggatatt ccaattttca
    18661 aattaagttg aattattgag attattatta accacctaat tttacagcag ataaaattca
    18721 taaagttcat taattgataa ttaatatgga ttatttcata accatgatat ggattatgat
    18781 gatctacagg tataaaaaac cctgccatgc ggcagggtca taaaagtaag aagaatgaat
    18841 taacgcgcca gccaaccgcc atccacggca atggtataac cattcacata atctgaagcg
    18901 ctggaggcaa ggaacactat cggccccatc aggtcactcg gcagtcccca acgaccagct
    18961 ggaatgcggt cgagaatttc cgcgctacgt tgttcatctg cccgtagttg ttgagtattg
    19021 ttggtcgcca tgtaacccgg agctatcgca ttaacattaa tgttgtgttt agcccattcg
    19081 ttcgccatca atcgcgtcac acccatcacg ccgctttttg atgcggtata agaaggcaca
    19141 cggatcccgc cctggaagga gagcattgac gcgatattga taatcttgcc gccattgcct
    19201 tgcgcgataa agtgtttcgc cgctgcctga gacatgaaga atacgctctt gatattcagg
    19261 ttcatgacat cgtcccagtc tttttcgctg aactcgagag cgtcttcgcg gcgaatcaat
    19321 ccggcgttat tcaccaggat atcaatatga ccaaattcag ctaccgcgcg atccagcagt
    19381 ccaggaatgc catcaatctt tcgcagatcg gcggtcaggc ttaaaaaacg acgccccagc
    19441 gccgtgacct gctcgatggt ttcagtcggt tcaacgatgt taatgccaac aatgtcacag
    19501 cccgcttgcg ccagccccaa cgccatcccc tggcccagcc cagtatcaca accagtgacg
    19561 accgcaactt taccttcgag agaaaatgca cttaaaatca taacaatacc ttattcgttt
    19621 atgcccacaa ctagcgcaaa tctttaacgg ccacatggtc catatcatca aagacctggt
    19681 tttcaccaac catgccccag ataaaggtat aagctttggt tccgacgccg gaatggatcg
    19741 accagctcgg ggagatcacc gcctgctcgt tatgcatcac aatgtgacgc gtttcttgcg
    19801 gttgccccat catgtggaaa acgcaggcgt catcatccat attgaaatag aaataaactt
    19861 ccatccggcg ctcgtgggtg tgacacggca tggtgttcca caagttacct ggagccagct
    19921 ccgtcagccc catactcaat tggcaggttt ccagcacatc cgggacaaaa tatttgttaa
    19981 tagtgcgacg gttactggtg aggttatcgc ctaacgtgac tggagatact tcgtccgggg
    20041 tgactttttt ggtgggatac gtcgtatgcg cgggtgcgca attgtaataa aactttgccg
    20101 gagtggcggt atcaatactg gcaaagacaa cttcttttgc acctttacca acatacaggg
    20161 cgtcgcggtg acctatttca tagcattggc catcgacagt aatcgtaccg gcaccgccaa
    20221 tattgataac acctaactcg cgacgttcaa ggaaatagct tacgccgagt tgtttaccaa
    20281 cttccccgcc aacggaaacc gttttagtta tcggcataat gccgccaaca ataattcggt
    20341 caatgtggct gtaaaccatg gtgtactcat cggcgacaaa taccttttca accaaaaatt
    20401 cattgtgcag cccttgggta tccagcgttt ttgcgtgcgc actgtggatg ctctgtctta
    20461 cgtccacatc aacctccgat aatcagtgaa gcgtgaaaat agaaaacgat agtgaaacac
    20521 tgtttcgttt tctctataaa gggatgatat gcccatgggc tagggttttc aattaaaaat
    20581 aaaacaatgt tttattttta agttaaggat taaaaaaagt gcagtgtcga tcacgaatat
    20641 gtcatgagaa tggaaaaatg agggagccca gaaaatgtat gtcgacttgc cagccatcat
    20701 tattcaacag attaatgacg gcagatattt atcggtaagg aggaaatgca gagctactcg
    20761 tcacgttcaa tggtcaatgc cacgccctgg cccccgccga tacaaagcgt tgccagccct
    20821 ttgcgggcat tacgtttcac catttcatga accagagaaa ccaggattcg gcaaccggaa
    20881 gcgcctatcg ggtgaccgag tgcgatcgcg ccaccattga cattgacccg acgctcatcc
    20941 cactcaagca tcttgccaac cgaaagcgcc tgtgcagcaa acgcttcatt agcctcgata
    21001 agatcgacat cagccaactg ccagcctaca cgctccaggc aacggcgggt cgcatacacc
    21061 ggcgcaattc ccatcaatgc cggatctaca ccaacgctgg caaatgcgcg gatgcgggcc
    21121 agcacgggta aattcaacgc tcgtgctttg gcttcgctca tcatcattac cgcagctgcg
    21181 ccatcgttta tggataatgc attccccgcg gtcacagaac cgagactatc aaatgaagga
    21241 tttaaacggg ctaaaccttc tgcactggcg tcagtgcatg gctgttcatc ggtatcaaca
    21301 accaacgtct gaccgttact ttggatcatt accgggacga tctcatcttt aaatcgtccg
    21361 gcgtcaatcg ccgctcgcgc tttttgttgc gagctaagtg cgtaagcatc ctgcaactga
    21421 cggctgatgc catattcgcg agccagattt tcggcggtga caccaatatg ataatcattg
    21481 aaggcatccc acaacccatc atgcaccaga ctgtcaacca actggctatt gccaagctgt
    21541 gcaccggtgc ggctatcagt cagaacatgt ggtgcgcggc tcatgttttc ctggccaccg
    21601 gcgatgacaa tatcagcctc gccacactgt atcgcctgag tagccagatg cagtgcttta
    21661 agcccagaac cgcaaacgtc attaatagtg attgcagaaa cgctattagg aagaccacct
    21721 ttaatagccg attgccttgc cggattctgc cctgcccctg cagtcaacac ctgaccaaga
    21781 attacttcat ccaccgcata tgcaggaacg ccggtacgtt ctattaacgc tttcacgacc
    21841 aaactaccaa gttccacggc ggaatgaccc gctaacgcac cacgaaagca gccgataggt
    21901 gtccgtaacg ccccgacaat cacaacgtct ttcatcacaa cctcgcacca attaacagtg
    21961 caatagtaaa tgattgttaa ttacagttat cttaattgtt taaaaaaagt gatttttatc
    22021 acaaaagaaa tatgcctgag cagcagtcag agacataact ggcacgtaag gtttgcaacc
    22081 actaacccac caatagaggg gtagataggg cgttaatctc ccatacttaa cctggtttat
    22141 ggtaaattgc cctccatttt gtttaatttg tagatgatac gttcagataa tgtctaatat
    22201 ttggtctaaa gaagaaactc tgtggagttt cgcgctctac ggcacagccg ttggtgcagg
    22261 cacgctcttc cttcctattc agttaggttc ggcaggggct gtggtcctgt ttattactgc
    22321 tctggtcgcc tggcctttaa catattggcc acataaagct ttatgccagt tcatcctctc
    22381 atcgaaaaca tcagcaggtg aagggataac gggcgcggta acacactact atggcaagaa
    22441 gattggtaat ctgattacca cgctgtactt catcgccttt tttgtcgtcg tgttgatata
    22501 tgcagtggca attaccaact cacttacaga acagctggca aagcatatgg ttattgatct
    22561 tcgcatccgt atgttggtga gtctgggtgg gtaatgactc caacttactg atagtgtttt
    22621 atgttcagat aatgcccgat gaccttgtca tgcag
//
LOCUS       DAJVUP010000060        22459 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.060, whole genome shotgun sequence.
ACCESSION   DAJVUP010000060 DAJVUP010000000
VERSION     DAJVUP010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22459
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.060"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            43..234
                     /locus_tag="OQQ75_002054"
     CDS             43..234
                     /locus_tag="OQQ75_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1976387.1"
                     /translation="MKYGKLGYIVPRPQKIRGRWLIDRRAVFVGPGETGIAPEIHTGD
                     DDALKEILTHVTEATKKQH"
     gene            203..1309
                     /locus_tag="OQQ75_002055"
     CDS             203..1309
                     /locus_tag="OQQ75_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HCS1976388.1"
                     /translation="MSPRPRKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTD
                     KGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKN
                     GDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLW
                     VDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRARLTMEDWQKIYNATPEKHFIRNAML
                     LAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGC
                     RDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAGKTPPTFHEQRSLSE
                     RLYRAQGIDTKTLLGHKVQATTDRYNDTRGQEWV"
     gene            1489..2283
                     /gene="potC"
                     /locus_tag="OQQ75_002056"
     CDS             1489..2283
                     /gene="potC"
                     /locus_tag="OQQ75_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HCS1976389.1"
                     /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT
                     KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV
                     VMISPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE
                     AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI
                     YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNTGDVK"
     gene            2280..3326
                     /gene="potD"
                     /locus_tag="OQQ75_002057"
     CDS             2280..3326
                     /gene="potD"
                     /locus_tag="OQQ75_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotD"
                     /protein_id="HCS1976390.1"
                     /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE
                     QFTKETCIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS
                     KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYK
                     GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY
                     MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN
                     FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS
                     SIYEEYYQKLKAGR"
     gene            complement(3482..4303)
                     /gene="cobB"
                     /locus_tag="OQQ75_002058"
     CDS             complement(3482..4303)
                     /gene="cobB"
                     /locus_tag="OQQ75_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HCS1976391.1"
                     /translation="MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVL
                     VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP
                     KIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ
                     VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH
                     VYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL"
     gene            complement(4319..5230)
                     /gene="nagK"
                     /locus_tag="OQQ75_002059"
     CDS             complement(4319..5230)
                     /gene="nagK"
                     /locus_tag="OQQ75_002059"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HCS1976392.1"
                     /translation="MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVC
                     ELVAEADQRFGCRGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL
                     DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRL
                     PVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQQLQAPEIIALYNQG
                     DEQARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPV
                     ARVPRIERARHGDAGGMRGAAFLHLTD"
     gene            complement(5259..6503)
                     /gene="lolE"
                     /locus_tag="OQQ75_002060"
     CDS             complement(5259..6503)
                     /gene="lolE"
                     /locus_tag="OQQ75_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HCS1976393.1"
                     /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG
                     LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTG
                     LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
                     KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG
                     SSVSGIALKMTDVFNANKLVRDAGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM
                     VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG
                     LIIGVVVSLQLTPIIERIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL
                     LASWYPARRASNIDPARVLSGQ"
     gene            complement(6503..7204)
                     /gene="lolD"
                     /locus_tag="OQQ75_002061"
     CDS             complement(6503..7204)
                     /gene="lolD"
                     /locus_tag="OQQ75_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309522.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HCS1976394.1"
                     /translation="MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSS
                     GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF
                     TALENVAMPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL
                     VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM
                     RDGRLTAELSLMGAE"
     gene            complement(7197..8396)
                     /gene="lolC"
                     /locus_tag="OQQ75_002062"
     CDS             complement(7197..8396)
                     /gene="lolC"
                     /locus_tag="OQQ75_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004976588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolC"
                     /protein_id="HCS1976395.1"
                     /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV
                     LSVMNGFERELQNNILGLMPQAILSSEHGSINPQQLPETAVKLDGVNRVAPITTGDVV
                     LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
                     QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGN
                     ITGWRLWLDEPLKVDSLSQQKLPEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA
                     VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGASAGIIGAILGAALGA
                     LLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP
                     AEALRYE"
     gene            8658..9731
                     /locus_tag="OQQ75_002063"
     CDS             8658..9731
                     /locus_tag="OQQ75_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HCS1976396.1"
                     /translation="MKQKELWINQIKGLCICPVVIYHSVITFYPHMTTFPHPLSEVLS
                     KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW
                     LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF
                     SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR
                     RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN
                     TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL
                     SQRAFSDLLFSPPSLPAAVSYSR"
     gene            9859..13305
                     /gene="mfd"
                     /locus_tag="OQQ75_002064"
     CDS             9859..13305
                     /gene="mfd"
                     /locus_tag="OQQ75_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HCS1976397.1"
                     /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
                     IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ
                     RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG
                     EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP
                     TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
                     PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW
                     PRVQLKTKHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE
                     GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
                     GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY
                     LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA
                     ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR
                     LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM
                     ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE
                     RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV
                     REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND
                     FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL
                     LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF
                     SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI
                     ASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE
                     FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA
                     IA"
     gene            13449..14411
                     /gene="ldtC"
                     /locus_tag="OQQ75_002065"
     CDS             13449..14411
                     /gene="ldtC"
                     /locus_tag="OQQ75_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtC"
                     /protein_id="HCS1976398.1"
                     /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGEN
                     KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE
                     GIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
                     TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI
                     RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI
                     TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL"
     gene            complement(14494..14751)
                     /gene="bhsA"
                     /locus_tag="OQQ75_002066"
     CDS             complement(14494..14751)
                     /gene="bhsA"
                     /locus_tag="OQQ75_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple stress resistance protein BhsA"
                     /protein_id="HCS1976399.1"
                     /translation="MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISAKAG
                     TNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK"
     gene            14992..15624
                     /gene="comR"
                     /locus_tag="OQQ75_002067"
     CDS             14992..15624
                     /gene="comR"
                     /locus_tag="OQQ75_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family copper-responsive transcriptional
                     repressor ComR"
                     /protein_id="HCS1976400.1"
                     /translation="MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLAD
                     LVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFA
                     AIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGE
                     IPTHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK"
     gene            complement(15686..16225)
                     /locus_tag="OQQ75_002068"
     CDS             complement(15686..16225)
                     /locus_tag="OQQ75_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HCS1976401.1"
                     /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK
                     ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA
                     LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD
                     PGTQIPLDSNGQLILNNKV"
     gene            complement(16452..17756)
                     /gene="ndh"
                     /locus_tag="OQQ75_002069"
     CDS             complement(16452..17756)
                     /gene="ndh"
                     /locus_tag="OQQ75_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017384716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone dehydrogenase"
                     /protein_id="HCS1976402.1"
                     /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS
                     HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE
                     KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK
                     YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGE
                     RILPALPPRISAAAHSELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI
                     KAPDFLKDIGGLETNRINQLVVEPTLQTTHDPDIYAIGDCASCTRPEGGFVPPRAQAA
                     HQMATCAMNNILAQINGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI
                     ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH"
     gene            complement(18156..18698)
                     /locus_tag="OQQ75_002070"
     CDS             complement(18156..18698)
                     /locus_tag="OQQ75_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1976403.1"
                     /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ
                     HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI
                     DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT
                     HKFKNISPHLQRIKAFKTLG"
     gene            complement(18721..19746)
                     /gene="nagZ"
                     /locus_tag="OQQ75_002071"
     CDS             complement(18721..19746)
                     /gene="nagZ"
                     /locus_tag="OQQ75_002071"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HCS1976404.1"
                     /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE
                     LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALLGMEEGGKLAQEAGW
                     LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPEKALAIASRFIDGMHEAGMKT
                     TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSTLIRENKLDAIMPAHVIYSD
                     VDPRPASGSSYWLKTVLRQELCFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI
                     LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKASSTRLNQLHERW
                     QEEKAGH"
     gene            complement(19757..20581)
                     /gene="thiK"
                     /locus_tag="OQQ75_002072"
     CDS             complement(19757..20581)
                     /gene="thiK"
                     /locus_tag="OQQ75_002072"
                     /EC_number="2.7.1.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine kinase"
                     /protein_id="HCS1976405.1"
                     /translation="MPFRSNNPITRDELLSRFFPQFHPVTTFNSGLSGGSFLIEHQGQ
                     RFVVRQPHDPDAPQSAFLRQYRALSQLPASIAPKPHLYLRDWMVVDYLPGAVKTYLPD
                     TNELAGLLYYLHQQPRFGWRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP
                     LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDTALELAAVWVENTEQHRQLVNDYA
                     TRAKIYPAQLWRQVRRWFPWLLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ"
     gene            complement(20565..21203)
                     /gene="lpoB"
                     /locus_tag="OQQ75_002073"
     CDS             complement(20565..21203)
                     /gene="lpoB"
                     /locus_tag="OQQ75_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HCS1976406.1"
                     /translation="MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQ
                     PVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDWNGAMQPIVSKMLGADGVTAGSV
                     LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
                     RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ"
     gene            complement(21217..21594)
                     /locus_tag="OQQ75_002074"
     CDS             complement(21217..21594)
                     /locus_tag="OQQ75_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HCS1976407.1"
                     /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI
                     SAEKPVLSTSDIQPSASSTLYNERQKPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH
                     SAVTLYGSANFLGAHKVRLYLYL"
     gene            complement(21597..21956)
                     /gene="hinT"
                     /locus_tag="OQQ75_002075"
     CDS             complement(21597..21956)
                     /gene="hinT"
                     /locus_tag="OQQ75_002075"
                     /EC_number="3.9.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415621.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine nucleoside phosphoramidase"
                     /protein_id="HCS1976408.1"
                     /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP
                     NILIPTVNDVSAEHEQALGRMITVVAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM
                     HLLGGRPLGPMLAHKGL"
BASE COUNT         5600 a         5898 c         5570 g         5391 t
ORIGIN      
        1 aaaccaaaac ggttcagtct cccaataaca aacactaccc tggtgaaata cggaaaacta
       61 ggatacatcg ttccaagacc acaaaaaatt cgtgggcgtt ggctgataga tcgccgagca
      121 gtatttgttg ggccaggtga aacgggaatt gcgccggaaa ttcatactgg cgatgatgat
      181 gcactgaagg agattttaac tcatgtcacc gaggccacga aaaaacagca ctgacgtagc
      241 cggtctttac gaaaagtttg atcgcagaac tggcagagtt tactaccagt ataaaaatcc
      301 tgtgactgga aaatttcacg gactcggaac agacaaaggt aaggcagaaa aaatcgcttc
      361 cacagccaat cagcgaatag ctgcagcaga agctgaatat ttcatgcgca aaattgatga
      421 aagtccgtca gcaacaaaac gtcggggtat cagattaaag gcatgggttg atcgatatct
      481 gaaaatacag gacacgcgac tgaaaaatgg agatattgca gctacaactc acaaagaaaa
      541 aactcgaatg gctgcatacc tggtttcccg tctgggaaac cacccattga aagaactgga
      601 agtaagagac tttgcattaa tactggatga gtggctggat aaagacatgg tcagcacagc
      661 gagagtaaat cgtggattat gggttgatat ttataaagaa gcacagcatg caggggaagt
      721 tcctcctgga tggaatcctc cggaggctac ccgtaaaccg atccctaaag taaccagagc
      781 caggctcacc atggaagact ggcaaaaaat ttacaatgca acgcctgaaa aacactttat
      841 ccgtaacgca atgcttcttg cgattgttac tggtcagcgc cgtgatgaca tttgccacat
      901 gcgtttttca gatgtgtgga acgaacactt gcatatcacc cagggaaaaa ccggaatgcg
      961 tctggcgtta ccgcttacac tacgctgtga tgccattggg ataacgttaa aagaagttat
     1021 tgatgggtgc cgagacagaa tattaagtcc atatctaatc catagtcggc accagaaaca
     1081 accgaagccg atgagtaaag acaacctgag cgactacttt gccaaagcac gggatctggc
     1141 tgggataatt ccaccagcag gaaaaactcc gccaacattt catgaacaac gctctctatc
     1201 agaacggctg taccgtgcac agggtatcga tacaaaaaca ttactaggac ataaagtcca
     1261 ggcaaccacc gatcgctata acgatactcg aggtcaggaa tgggtttaag ctggttattt
     1321 gacaaacacc atatggaata tccgtcacca tctcaggaaa aaagtgttgt aaaatgcgtg
     1381 gcctagtttt ggggaaacgt tttggagaga ttttggagaa aggaaaaaat tgaataaatt
     1441 caaaatcctg aaagtgctcc accttatgaa taagaaggtg gaactcgaat gatcggtcga
     1501 ctgcttcgcg gcggttttat gaccgctatc tacgcgtacc tgtatatccc aatcattatt
     1561 ttgattgtga actcctttaa cagctcgcgc tttggcatca actggcaggg ttttaccacc
     1621 aaatggtata gcctgctgat gaacaacgac agcctgttac aggcagcgca gcattcacta
     1681 acaatggcgg tgttttcggc gacgtttgct acgcttatcg gttcactgac ggcagttgcg
     1741 ctgtaccgtt atcgctttcg cggtaagccg ttcgttagcg gaatgctgtt tgtggtaatg
     1801 atatcaccag atatcgtgat ggcaatttcg ctgctggtgc tgtttatgct gctgggtatt
     1861 cagcttggct tctggtcgct gctgttctcg catatcacct tctgcctgcc atttgtggtg
     1921 gtgacggtgt attcgcgcct gaaaggtttt gacgtgcgga tgctggaagc ggcgaaagat
     1981 ctcggtgcca gcgaatttac aattctgcga aaaatcatac tgccactggc aatgccagcg
     2041 gtggcagcgg gctgggtgtt aagctttacc ctgtcgatgg acgatgtggt agtttcttcg
     2101 ttcgtcaccg gaccaagtta tgaaattctg ccgttaaaaa tttattcgat ggtcaaagtc
     2161 ggcgtatcgc cggaagttaa cgcgctggca accatattac tggtgctgtc gctggtgatg
     2221 gttattgcca gtcagcttat tgctcgtgat aaaacgaaag gtaacacagg ggacgttaaa
     2281 tgaaaaaatg gtcacgccac ctgctcgcgg cgggtgctct ggcactgggc atgagcgccg
     2341 ctcacgccga tgacaacaac acgctgtatt tctacaactg gaccgagtac gtgccgccag
     2401 gactgcttga acagttcacc aaagaaacct gtattaaggt tatctattcg acttacgagt
     2461 cgaacgaaac catgtacgcc aagctgaaaa cgtacaaaga cggtgcgtat gacctggtgg
     2521 ttccttcaac ctattacgtc gataaaatgc gtaaagaagg gatgatccag aagatcgaca
     2581 agtcgaagtt aacgaacttc agcaatctcg atccagacat gctcaacaag ccttttgacc
     2641 cgaataacga ctactccatt ccgtatatct ggggggcgac ggcgattggt gttaacggtg
     2701 atgcggtgga tccgaaatct gtcaccagct gggccgatct gtggaagcca gagtacaaag
     2761 gcagcctgct gttgaccgac gatgcccgtg aagtgttcca gatggcgctg cgtaagctgg
     2821 gctattccgg taacaccacc gatccgaaag agattgaagc tgcatataac gagctgaaaa
     2881 aactgatgcc aaacgtcgca gcgtttaact ccgataaccc ggctaacccg tacatggaag
     2941 gcgaagttaa cctcggcatg atctggaacg gttctgcttt cgttgcacgc caggcgggta
     3001 cgcctattga cgtggtgtgg ccgaaagaag gcggcatatt ctggatggac agcctggcga
     3061 tcccggcaaa tgccaaaaac aaagaaggcg cgctgaaatt gatcaacttc ctgctgcgcc
     3121 cggatgtggc aaaacaggtt gctgaaacta tcggttatcc aacgccaaac cttgcggcgc
     3181 gtaagctgtt aagtccagaa gtggcgaacg ataaaacgct ctacccggat gctgaaacca
     3241 ttaaaaatgg cgaatggcag aatgacgttg gcgcagccag cagcatttat gaagagtatt
     3301 atcagaagct gaaagcagga cgttaattca gcaagcgggc ggtggtatta ccgcccgttt
     3361 tttatttagc aaggatgtgg ctaatgagtc aggacagtag agttttatcc gactctttcg
     3421 tcggtattgt ggtccgctcg taggcctgat aagcgtagcg catcaggcaa tgcttcctgc
     3481 tttataatcc cttcagcaac ttttcaacaa actcaggcac cacctggctt gccgggccgt
     3541 aatatttctc ggcaaattca ttaccgacct gacttggttc gagattcagt tccacggtgt
     3601 gcgcgccatg cagtttcgct tcgtgaacaa acccagccgc cggataaaca tgcccggaag
     3661 taccaatggc aatgaaaata tcagccatcg acaacgccat ataaatttca tccatgccga
     3721 gtggcatttc gccaaaccaa acgacgtgcg ggcgcaaggg tgccgggaac tggcaacaat
     3781 ggcatttatc ttctggcgta acgtctccgg tccagtcgag aacctgacca ctttgcgaac
     3841 aacgaacttt cagcaattcc ccatgcatat gaatgacatt ggtattacct gcgcgttcat
     3901 gcaggttgtc tatattctgc gttaccagca aaaagcgatc gccgagagcg tcttgcagtt
     3961 tagccagcgc aagatgcgcg gcgttaggct gaatttttgg ctgctgcagc tgtcgacgac
     4021 gggcgttata aaacgcttgc accagttcag gatcgcgatc gaaaccttcc ggcgttgcca
     4081 catcttcaac ccgatgttct tcccacaggc catctgcggc gcgaaaggta cgaatacctg
     4141 attccgcaga aattcctgcc cctgtcagta cgagtactct tggtttttcc attgcttccg
     4201 gcaccacttt atctctgaaa aaaatacgct gacgcaaacg ctcgcgcagg cggcgtttat
     4261 ttttacgaaa acgacttaac cgatgacccc gacgcgacag catagcaacc tctgttgttt
     4321 aatcggttag atgtaggaag gccgcaccac gcattcctcc cgcatcaccg tggcgcgcgc
     4381 gttcaatgcg cggaacacga gctacaggta agagatgacg aggcagcctg tccgccagtt
     4441 gcgttgtgat tgccgggaaa ttcgataagc caccaccaat gacgaccagg tcagggtcaa
     4501 caatggtcag gatatttccc agacaaaccg ctaataaatc cagataacgc tcaacgtgcg
     4561 cccttgcctg ctcatcgcct tgattataaa gcgcaataat ttcgggagcc tgcaactgtt
     4621 gatgataata gtgttgatac agccacgcaa aaccgcgacc agacagataa ttctcaatgc
     4681 agccatgctg accacagccg cagcggcgta acgggaaatc caaccccatc atggttaacg
     4741 catcaaccgg cagacgcata tggccaaact cgccggtaat gtagctttta ccggtaatcg
     4801 gtttgccgtt gaaaatcagc ccaccgccaa cgccggtacc aagaatcaac cccatcacca
     4861 gtggatattg cgtaaattca tcatcccagg cttctgaaag ggcaaaacag ttggcatcgt
     4921 tatcaaggcg tacatcgcga tcaagacgtg cgctcaggtc ggcacgcagc ggtttaccgc
     4981 tggcagcggg gacattggcg gcatacagcg taccatcttc tgtttccggc attcccggta
     5041 taccaatgcc gacagaacct ctacagccaa aacgttgatc agcttcggct accagctcgc
     5101 acactgcatc taaaaatgcg tcatagctgt cacgcggtgt cggcacccgc ttttcccact
     5161 gcaactgccg accgctatca aacacgccaa gcgcaatttt tgttccacca atatcaaacc
     5221 cgtaatacat tgccgctcct tgttttaatg tactgccttt actggccgct aaggactcgc
     5281 gcagggtcaa tattactggc gcgccgcgcc ggataccaac ttgccaaaag actcagcaac
     5341 aatgctgtga ccagtacgta gaagacgtcc agccagtgca attccgatgg caggaagtca
     5401 ataaaataga tatcgctgga gaggaactga tgaccgatca gcttttcaat ccgctcaata
     5461 atcggggtaa gttgcagtga aacaactacg ccgataatca gcccacacag gctgccgaac
     5521 agccctgcca gcaatccata ccagacaaag atggcgcgaa ttaaaccatc tttcgccccc
     5581 agcgttctta atactgcgat atcgccactc ttatctttca ccgccatcac taaggtggag
     5641 acgatgttga aacaggccac gccaatcacc agtaccatcg ccagatacat aatggcgcgg
     5701 atcatctgga tatcgcgata catatagccg taagtaccaa tccagctttt aatataaaca
     5761 tagctgttgg tcatttcacc cgcatcgcgt accagcttat tggcgttgaa aacatccgtc
     5821 attttaaggg caatacctga cacgctggaa cccatatcaa gatattgttg ggcatccgcc
     5881 agcgggatca tggcaaaact gtgatcgagt tggccactca actgcaaaat acccgcaacg
     5941 tgcaaacgca cacgttttgg ctgcatcagt ttatgctcag gattcgagtt ggggatcatg
     6001 atcgacaccc aatcgccctg cttcactttc agcgcatccg ccacgccttt gccgatgata
     6061 atttgctgtt cgcccgcttt aaaattgcgc cacgcatccc cctgaacaaa cgagggtaat
     6121 gcgctcagac gctgttcctg ttgtgggtta acgcccttca cctggattgc gcgcagattc
     6181 gctccacttt ccaccagccc ggtgaaattg atatacggcg cagcggcggc aatacccggc
     6241 actttctgca ctttatccag tgcttcctgc cagttagtcc atggctgatt taccgcttcg
     6301 atttcaccat gcggcaccac cgccagaatg cggttattca gttcgcgttc aaagccgttc
     6361 atcgcgctta agccgacgat caataccgcc acaccgaggg caatgccaat ggtagaaatg
     6421 acggagatca gcgacaccat gccgccgcgc cgccgtccgc gactaaaacg caggccaatt
     6481 aataacgata aaggcatcgc cattactccg cccccatcag gctcagttcc gccgtcagac
     6541 gtccatcacg catttctaac tggcggctca tacgtttcgc cagttgcagg tcgtgagtaa
     6601 ccaccaggaa ggcggtgccc tgcaagcgat tcaattcccc aagcaactgg aagatgctgt
     6661 cggcgttacg cgcatcgagg ttaccggtag gctcatccgc cagtaccaga cgcggattat
     6721 tgaccagcgc acgggcaatc gctacacgct ggcgttcgcc gccagaaagt tcagatgggc
     6781 ggtgattcgc acgatgctcc agccccaccg cttttaacat ctccagtgca cggctgttga
     6841 tttcagcggg ctttttcttg ccaatcagca gcggcatagc cacgttttcc agggcggtaa
     6901 aatccggcag caggtggtga aactgataaa taaagcccag tttctggttg cgcagttctg
     6961 cttttgctgc cgacgacagt ttgctcatcg gttgaccgtt aaagatcaca tcgccggagg
     7021 ttggcgtatc cagtccgccc agcaggtgca gcaaggtgct tttaccggaa ccagagctac
     7081 cgacgatcgc catcatttca ccttcgccga cgctgaaact gacattgtgc agtacatcgg
     7141 tttgcacact gccttcctga tagcgtttgc acaggttgtc gcattgcaac aggatcttat
     7201 tcataacgta aagcctcagc gggttgtgtg gcggcagcgc gccatgaagg gtaaagcgta
     7261 gacagcagcg cgatagccat cgccaccagc gcaataacaa tgacctgtaa aggttcgata
     7321 gccatcggca gcgccgcgcc atcaagcagg acgccgatta ttggcatcag attatttaac
     7381 tggctggcaa gcagtgcgcc aagcgccgct ccgaggatcg caccgataat cccggcgctg
     7441 gccccttgca ccataaagat catcatgatt tgtcgcggag ttaagccttg cgtttgcagg
     7501 atcgctactt cgccctgctt ctccatcacc atcagcccca gcgaggtaat aatgttaaac
     7561 gccgcaacgg cgacaatcag gctcagcagt aaacccatca tatttttttc catgcgtacg
     7621 gcctggaaca actcgccttt acgatcacgc cagtcctgcc atttgctgtc ttcaggcagt
     7681 ttttgctgac ttaatgagtc gactttcagc ggctcatcca gccacaaacg ccagccggta
     7741 atattgcctg ccggataacg catcagacgc gaggcatcct caatattcac cagcatttca
     7801 ttgccatcga cttcactgtt ggcggcgaaa gtgccaatca cattgaacag gcgctgactt
     7861 ggaatacgcc ccatcggcgt gaactggctg gcagatggta ccatcatgcg gatttgatca
     7921 ccgcgattaa cgcctagctg tgaggcaagt tgttcgccga ggatgacatt atatttcccc
     7981 ggctcgaggt cagtttgttt cacattgacc agatacggcg ttagtggatc tttttgcgcc
     8041 ggatcgatac ccagcatcac cccgaccgcc acgctgcgcg cgctttgcag taccacatca
     8101 ccggtagtaa taggtgcgac gcgattaacg ccgtccagtt tgactgccgt ttccgggagt
     8161 tgctgcgggt taatagagcc atgctcagaa gagagaattg cctgtggcat caggccaagg
     8221 atgttgtttt gcagctcgcg ctcaaagccg ttcatcactg acaatactgt gaccagcgcc
     8281 atcaccccga gggtaatgcc gatggtagaa agccaggaga cgaaacgacc gaagcgatcc
     8341 gctgcacgcc cacgcatgta acgcaggcca ataaatagag cgacaggttg gtacatgaaa
     8401 tccgtctggt tgctgtagca aagacacgag tatataagcg aaagcaagat gggtaaacgt
     8461 ctgaactgta agtgatcgtc agggctaatc tgaaaagccc ccgtaaatca atcggctaaa
     8521 ttgccatgtt ttatcatcaa tcttgccgcc tgatcttaat ctgaaaaatc atccaataca
     8581 gacagatacc cattacacct cgggtcataa cccgcaggat caaccgcatg taaattaaaa
     8641 aagagcgtgt tgtcctgatg aaacaaaaag agctatggat taaccagatc aaagggttat
     8701 gtatttgtcc ggtggtgatt tatcactcgg tcattacctt ttatccgcat atgaccactt
     8761 ttccgcatcc gttatcggaa gtcctgagca aatgctggat ctatttcaat ctttaccttg
     8821 caccctttcg tatgccggtt tttttcttta tatccggcta tttgattcgc cgctatatcg
     8881 acagcgtacc gtggggaaat tgtctcgata aacggatctg gaacatcttc tgggtgctgg
     8941 cgctttgggg cgtggtgcag tggctggcgt taagtgcgct gaaccagtgg ctggcacctg
     9001 agcgcgattt aagcaatgcc tccaatgccg cttatgccga ttccaccggt gagttcctgc
     9061 acgggatgat caccgccagc accagcttgt ggtatctgta tgcgttaatt gtctatttcg
     9121 tggtatgtaa aatttttagc cgtctggcgc tgccactatt cgccttgttt gtactgctga
     9181 gtgtggcggt taatttcgtt cccacgccgt ggtggggaat gaacagtgtg atccgcaatt
     9241 tgccttatta cagccttggc gcatggtttg gcgcaacaat aatgacctgt gttaaagagg
     9301 taccgttgcg ccgccatctg ctgatggctt ctttgcttac cgttctggcg gtcggtgcct
     9361 ggttgtttac tatctcgctg ctgttgtcgc tggtatcgat tgtggtgatc atgaagctgt
     9421 tttatcagta cgagcaacga ttcggtatgc gctccaccag cctgctgaat gtgattggct
     9481 ccaacaccat tgctatctac accacccatc gcattctggt tgaaatattc agcttaactc
     9541 tgcttgcgca aatgaacgca gcacgctggt cgccgcaagt cgaactgaca ctcctgctgg
     9601 tttatccctt tgtcagtttg ttcatctgta ctgttgcggg cttgctggta agaaaacttt
     9661 cacagcgtgc attcagcgat ctgttgttct ccccgccttc actgcccgct gccgtcagtt
     9721 actcccgcta agccatcgcc ccagccgggg cgattcaatt tgctaaacca tgtcgattac
     9781 ggataatgaa cagcattgct tatcagagat atgcccccat atgttgaggc atatcctaac
     9841 gagaatctga caaccgttat gcctgaacaa tatcgttata cgctgcccgt caaagcgggt
     9901 gagcagcgtc tgctgggcga gttaaccggc gcagcctgtg caacgctggt agcggaaatt
     9961 gccgaacgtc acgccggtcc ggtggtactc attgcaccag atatgcaaaa tgctctgcgt
    10021 ttgcatgatg aaatcagtca gttcaccgat cagatggtga tgaatctggc ggactgggaa
    10081 actcttccct acgacagctt ttcgcctcat caggacatta tctcctcgcg cctttccacc
    10141 ctttaccagc taccgacgat gcagcgtggc gtactgattg ttccggtgaa tacgcttatg
    10201 cagcgcgttt gcccacacag ttttctccac ggtcatgcgc tggtgatgaa aaaaggtcag
    10261 cgcctgtcac gagatgcatt acgaacccaa ctggacagcg ccggttatcg ccatgttgac
    10321 caggtgatgg agcacggcga atacgccacg cgcggcgcgt tgctggatct cttcccgatg
    10381 gggagtgagc tgccttatcg tcttgatttc tttgatgatg aaatcgacag cctgcgggtg
    10441 tttgacgtcg acagccagcg cacgctggag gaagtagaag cgatcaatct gctgcccgcg
    10501 cacgaatttc cgaccgataa agcggcaatt gaactgttcc gcagccagtg gcgcgatacc
    10561 ttcgaagtga agcgcgatcc ggaacatatt taccagcaag tgagtaaagg cacattacct
    10621 gccgggatcg agtactggca gccattgttc ttcagcgaac cactgccgcc gctgttcagt
    10681 tatttccctg ccaatacctt gctcgtgaat actggcgatc tggaaaccag tgccgaacgt
    10741 ttccaggctg acacgctggc gcgttttgag aatcgcggcg tcgatccgat gcgcccgctg
    10801 ttgccaccac aatcgctctg gctgcgggtg gacgagctct tctcagagct gaaaaactgg
    10861 ccccgggtgc agctaaaaac taaacattta ccgacaaaag ccgcgaatgc caatttaggt
    10921 ttccagaaac tgccagacct agccgttcag gcgcaacaaa aagcgccgct ggatgcgctg
    10981 cgtaagttcc tcgagacttt cgacggtccg gtggtgttct cggtagaaag tgaaggtcgc
    11041 cgtgaagcgc tgggtgaact gctcgcacga attaaaattg ctccgcaacg cattatgcgt
    11101 cttgatgaag ccagcgaccg tgggcgttat ctgatgattg gcgctgccga acatggtttt
    11161 gtcgataagg tgcgtaatct ggcgctgatc tgcgaaagcg atctgctcgg tgaacgtgtt
    11221 gcccgccgtc gtcaggattc tcgccgcacc atcaaccccg atacactgat ccgtaacctt
    11281 gcggagctgc atattggtca gccggtggtc catctggagc acggtgtcgg gcgctatgcc
    11341 ggaatgacca cgctcgaagc gggcggcatt actggcgagt atttgatgct cacctatgcc
    11401 aacgacgcca aactgtatgt tccggtgtcg tcactgcatc tgattagccg ttacgcaggt
    11461 ggcgcggaag aaaacgcccc gctgcataaa cttggcggcg atgcgtggtc acgcgcgcgg
    11521 cagaaagcgg cggaaaaagt gcgtgatgtg gcggcggaat tgctggatat ctacgcgcaa
    11581 cgcgccgcca aagagggctt cgcgtttaaa cacgatcgtg agcagtatca gttgttctgc
    11641 gacagcttcc cgtttgaaac cacgccggat caggcgcagg ccattaatgc ggtacttagc
    11701 gacatgtgtc agccgctggc aatggatcgt ctggtgtgcg gcgatgttgg ctttggtaaa
    11761 acagaagtgg cgatgcgcgc cgctttcctg gcagtagata accacaagca ggtggcggtg
    11821 ttggtgccta ccacccttct cgcgcagcag cattacgaca acttccgcga ccgtttcgcc
    11881 aactggccgg tacgtatcga aatgatctcc cgtttccgca gcgccaaaga gcagacgcaa
    11941 atccttgcgg aagtggcgga agggaaaatc gatattctga tcggtacgca caaactgctg
    12001 caaagtgacg tcaagtttaa agatttaggc ctgctgattg tcgatgaaga acaccgcttc
    12061 ggggtgcgtc ataaagagcg cattaaagcg atgcgcgcga acgtggatat tctgacgctt
    12121 actgcaacgc cgatcccacg cacgctgaat atggcaatga gcggaatgcg tgacctgtcg
    12181 attatcgcca cgccgcccgc ccgtcgtctg gcagttaaaa cctttgtccg tgagtatgac
    12241 agcctggtgg tccgggaggc gatcctgcgt gaaattttgc gcggggggca ggtttattat
    12301 ctctacaatg atgtggaaaa catccagaaa gctgccgaac ggctggcaga actggtgcca
    12361 gaagcgcgga tcgccatcgg tcacgggcag atgcgcgagc gcgaactgga acgggtgatg
    12421 aatgatttcc atcatcaacg tttcaacgtg ctggtttgta caaccattat cgaaaccggg
    12481 atcgacatcc cgacagccaa caccattatc attgaacgcg cggatcactt cggtctggcg
    12541 cagctgcacc agttacgcgg tcgcgtcgga cgttcacatc atcaggcata tgcatggctg
    12601 ctgacgccgc atccaaaagc gatgactacc gatgcacaaa aacgtcttga agcgattgcc
    12661 tcgctggaag atctcggtgc aggctttgcg ctggcaacgc acgatctgga gatccgcggc
    12721 gcgggtgaac tgcttggcga agaacaaagt ggctcaatgg aaaccatcgg tttctcgctg
    12781 tatatggagt tgctggaaaa cgccgtcgat gcactgaaag ccggacgcga gccgtcgctg
    12841 gaagatctca ccagccagca aacagaagtc gagctgcgga tgccgtcgct attgccagat
    12901 gatttcattc ctgacgtgaa tacgcgtttg tcgttctata aacgtattgc cagcgccaaa
    12961 acggaaaacg aactggaaga gatcaaagtc gagcttatcg atcgcttcgg cctgctgccg
    13021 gatccggcgc gtaccctgct ggatgttgcc cgtctgcgcc agcaagcgca gaaactgggg
    13081 atcaggaagc tggaaggtaa tgagaaaggc ggggtgatcg aatttgccga gaagaatcac
    13141 gttaatccgg cctggttgat tggtttgctg caaaaacagc cgcagcatta ccgccttgat
    13201 ggtccgacgc gcctgaaatt tattcaggat ttgagtgagc ggaaaacgcg tatcgaatgg
    13261 gtacgccagt ttatgcgtga actggaagag aacgcgatcg cttaatggta aatcgggggc
    13321 gtttctgcgc ccccatcggc aacatttaca aattctttgc acttccctgc actatccgac
    13381 actgtcacca tccataattc aggcttatct gtttattaca ataaccttat atttattatg
    13441 gatttttggt gatgatcaaa acgcgttttt ctcgctggct aacgtttttt acgttcgccg
    13501 ctgccgtggc gctggcgcta ccggcaaaag ccaacacctg gccgctgccg ccagcgggca
    13561 gtcgtctggt tggcgaaaac aaatttcatg tggtggaaaa tgacggtggt tctctggaag
    13621 ccatcgccaa aaaatataac gtcggctttc tcgctctgtt acaggctaac cccggcgttg
    13681 atccttacgt accgcgcgcg ggcagcgtgt taacgatccc gttgcaaacc ctacttccag
    13741 acgcgccgcg cgaaggcatt gtgatcaaca ttgcggagct gcgtctctat tactacccgc
    13801 cgggtaaaaa ttcggtaacc gtgtatccaa taggtattgg tcagttaggt ggtgacacgc
    13861 tgacaccgac aatggtgacc accgtttcag acaaacgtgc aaacccaacc tggacgccaa
    13921 cggcaaacac ccgcgcccgt tataaagcac agggaattga gttgcctgcg gtagtgccgg
    13981 ctggaccgga taacccaatg ggccatcatg cgattcgtct ggcggcctat ggcggcgttt
    14041 atttgcttca tggtacgaac gccgatttcg gcattggcat gcgggtaagt tctggctgta
    14101 ttcgtctgcg ggatgacgat atcaaaacac tctttagcca ggtcacccca ggcaccaaag
    14161 tgaatatcat caacactccg ataaaagtct ctgccgaacc aaacggtgcg cgtctggttg
    14221 aagtacatca gccgctgtca gagaagattg atgacgatcc gcagctgctg ccaattacgc
    14281 tgaatagcgc aatgcaatca tttaaagatg cagcacaaac tgacgctgaa gtgatgcaac
    14341 atgtgatgga tgtccgttcc gggatgccgg tggatgtccg ccgtcatcaa gtgagcccac
    14401 aaactctgta aatcctggat aaaaaaaatc cccgcgacac ggcatgtcgc ggggaaaaaa
    14461 tcagcagtag caggcattaa tgagggttaa tgcttattta taaattactg ctgttccatg
    14521 gagggtattc ggaccggtta cagaagtaat acggaaagat tttgcaccca tctcatccgc
    14581 tttttgcgcc agctgctctt ccagcgatcc cagatttgtc cccgctttag cactgattgt
    14641 accgactttt tgttggcctt ctggcgttga ctgaacttcg acagccgcaa agctggcaaa
    14701 tgacatggag cttaaaatcg ccgcagcgat gagggttttt acgtttttca taatagtggc
    14761 cttatgcaga tgaatgacgt cgcaagcaat tacttaacga tcgataacta aatgacagat
    14821 gtgatctgga tcacatacaa gatatttttt ataacaatca ttaattaatt taaaaatctt
    14881 taaatttcag ttaaatagaa agcaattatt tttatgggat ctggactggt gaacggaggt
    14941 gattattttt ataataatct ttcattcaca gtcaccaggt acaacggcat catggcaact
    15001 gactcaacac aatgtgtaaa aaaaagccgt ggccgcccaa aagtgttcga cagggatgcc
    15061 gcgcttgata aggccatgaa attgttctgg caacacggtt atgaagcgac ttctcttgcg
    15121 gacctcgtcg aagcgaccgg agccaaagcg cccacgctat acgcggaatt taccaacaaa
    15181 gaggggttat ttcgtgccgt tctcgaccgc tatatcgatc gttttgccgc taagcatgaa
    15241 gcacagctgt tttgtgaaga gaaaagcgtg gagtctgcgc tggctgacta ttttgctgcc
    15301 atcgccaact gctttaccag caaagacacc ccggcaggct gcttcatgat caacaactgc
    15361 accaccctct ccccagattc aggagatatc gccaatacgt tgaaatcacg ccatgcgatg
    15421 caagagcgca ctttgcagca gtttttatgt caacgacaag cgcgcgggga aatcccgacc
    15481 cactgtgacg tgacacatct ggcagaattc cttaattgta ttattcaggg gatgtcgatc
    15541 agcgcacgcg aaggtgcatc gctggaaaaa ctaatgcaga ttgccggaac gactttgcgt
    15601 ttatggcccg aactggtgaa ataagtcgca aaaaaagccc ctcagcctga gcgaatgagg
    15661 ggccaaattg cagagtacag ccttgttata ctttgttatt caaaatcagt tgcccattac
    15721 tatctagcgg gatctgcgta cccggatcgc ggtccatgcg gattttgccc tgctgatcgc
    15781 caatcttata ggtcacatca taaccgagca ttttttctga cttgtcatac accgttttac
    15841 aacgctgttg cgtagtcgtg taagtatcgc tttcctggag agagccctgg atctggttac
    15901 cggcatatcc accacccagc gcccccacaa cagtggcgac atctttaccg cgaccaccgc
    15961 caaactgatg ccctatcacg ccgccagcaa cagcgccgag caccgacccg gtaatgcgat
    16021 tttcatcctg caccggtcga cgatgggtca ctgtgacgtt gcgacactcc tgacgcggtg
    16081 ttttaaccgt ttccttgatt ggggttgcag aaacaacctg agcgtattgc gggccacgtt
    16141 caaacacgtt cagactggcc actgccgcta cgcccagcgc agctgcgaca ccaatcccga
    16201 tacccgccaa cattgattta ttcacgggaa cacctccttc tttgcagtta tgccaatcat
    16261 gcaagcgaag gagaaaagca gctatcagac agaagatgaa aagcgcggga atggctggaa
    16321 atacttaatg attcggagga gtctgaagga atgcctgatg cgacgcttaa cgcgtcttat
    16381 caggcctacc gctcgtacca tttgtccagg gcggatgagg cgtttatgcc acatccgcca
    16441 gtgtacgtcg attaatgcaa cttcaaacgc ggacggataa cgcggttaat actccccacc
    16501 agcatcatta atccggtttt aaagtaacca tgcagcgcaa tctgatgcat tcggtatagc
    16561 gagatatata caaagcgcgc aattcgtcct tcaatcatca ttgagccgcg cgtcaagtta
    16621 cccatcaggc taccaacggt ggagaagttc gacagcgata ccagtgaacc atgatcttta
    16681 tactgataat ttttcagcgg cttaccgttt atctgcgcca gaatattgtt cattgcgcaa
    16741 gtcgccatct ggtgtgcagc ctgagcacgc ggcggaacaa agcccccttc cggacgcgtg
    16801 catgacgcgc agtcgccaat agcgtaaatg tctggatcgt gggtggtttg cagcgtcggt
    16861 tccaccacca gctggttgat acggttagtt tcaagaccac cgatatcttt caggaagtct
    16921 ggcgctttga tcccggctgc ccacaccatc agatcagcct caatatattc accatcttta
    16981 gtgtgcaggc cgccttcatc agcactggtg accatggttt gcgtcagcac gcgaacgcca
    17041 agtttcgtta actcactatg ggccgcagca gagatgcgtg gcggtaatgc aggcaaaata
    17101 cgttctcccg cttctactag cgttacgttc agggcttcgt tggtcagacc tttataaccg
    17161 tagctgtgca gttgcttgac cgcgttatgc aactcagcgg agagttctac acccgtcgcg
    17221 ccgccaccga caatcgcaat gttcactttg ccattcgcgc ccaggttggc ggagtatttc
    17281 aggaacagat tcagcatctc ctggtggaag cgacgcgcct ggtgcgggtt atcgaggaaa
    17341 atgcagttct ctttgacgcc tggcgtattg aaatcgttag aggtgctacc cagcgccatg
    17401 accagggtat cataggcgat tttacgttcc ggaaccagca gttcaccttt ctcgtcgcgt
    17461 agttctgcaa tagtgattgt tttcgcttca cgatcaatat caatgacgga acccaactgg
    17521 aactggaaac catgattgcg cgcatgggcc agatagctca acgcatcgac gccttcatca
    17581 agcgagccag tcgccacttc gtgcagcagc ggtttccaca ggtggctgtg gttacgatcg
    17641 accagcgtaa ttttggcttt tttcttacgt cccagcttat gccccagctg tgttgccatt
    17701 tccagcccac cagcaccgcc gccgacaatc acaatctttt tcaatggcgt agtcaacgtg
    17761 acccccttaa atttattaac caattgttaa ttaatggtta ttaacatagc tcttaattaa
    17821 caacaggtta cagcaatgaa aatgttcttc gctattgaga ataacatgaa tggtgcattg
    17881 gtcataccaa aattgatgtt aatcaagttt tgttgctgaa aagataggcg actttaccgg
    17941 gtgagatcaa aaaatagagt ttattgttta ttatttgagc gaatttgtga gagtgatata
    18001 gagtgagggg tgtatgcagg gcgttcggta ggcctgataa gaggcgcatc aggcattgat
    18061 gctcgactgt cggatgcggc gtaaacgcct tatccgactt acagaattcg gagcgcatca
    18121 ggtaccggca aggttacctg atgcgacgag ggcatttacc cgagggtttt gaacgcttta
    18181 atgcgctgca aatgcgggga gatattcttg aatttgtgcg tctgctcttc gtcccagaca
    18241 atctcgtaat aatgatgcaa ctcttcagat gtccgctggc tgttaagcgc ttcatcatta
    18301 cgcgacaaaa tcaccaggca acgatcgcga ttcttctcgc ggaagttggt cacacactta
    18361 gtggcaatat cggcatactc ttccgggcga tcaatcttgc cttccatgtt ctcataaggg
    18421 aacaaattag ggttgaagat cacctggcgg atatcgcaaa gaaaaccaat ccgttccgcc
    18481 cagtatccgc ccagaccaac gccgcaaatc agcggacgct cgtcgacgtt cagttgcaac
    18541 attttgtcca cttctttaag cagatgctgc atatcatgtt tcggatgccg cgtactgtag
    18601 cttatcaagc gtacatccgg gtcaataaac tgcaattgta agactttctc gtggttaccc
    18661 ggactgttag agtcaaaacc gtgtaaatag ataatcatcg cttcctcaca taagccaggg
    18721 ttagtgacct gctttctctt cctgccagcg ttcatgtaac tgattcagac gggtgctgct
    18781 cgccttccag cgagccgagt ccatcagttc ctgtcgcgaa aatgaacctt tatgatacaa
    18841 acgtgtaaca cgttctgcct tgatcggtga cagattatct aacacgctga cggccccttt
    18901 acgattattg cagaccagga tcatatcgca acctgcgtcc agtgatgcct gcccgcgttc
    18961 ggcataactg cccataatcg cggcaccttc catcgataaa tcgtcagaga aaattacacc
    19021 gtcaaaacac agttcctgac gcaaaacggt tttcagccag taagaagaac cgctcgccgg
    19081 acgcggatca acatcactgt agatcacatg cgcaggcata atggcgtcga gtttattttc
    19141 gcggattaac gtgctgaaaa ccgacatatc tttggcacga atttccgctt gcgggcgtgg
    19201 gtcgcacggc gtctctttgt gtgaatctgc agttactgca ccgtgtcctg ggaagtgttt
    19261 cccggtcgtt ttcattccgg cttcatgcat cccatcaata aaccgactag cgattgccag
    19321 ggctttttct gggtcggcat gataagaacg ctcgccaatc gccgcgctga tatgtcctac
    19381 atccagcact ggcgcaaagc tgatatcaat atccatagcg atcatttcgc tggccatcag
    19441 ccaacccgcc tcttgcgcca gtttgccgcc ctcttccatt cccaacagcg cagcaaagga
    19501 ttgtgctgcc ggtaagcggg taaaaccttc gcgaaaacgc tgcacgcgtc caccttcctg
    19561 atctaccgcc accaccagat gattgcgcga tgctgcgcgg atctggcgca ccagttcacg
    19621 taactgggca ggatcatgat agttacgcgt aaagagaatc agccctccca ccagcggatg
    19681 cgccagtatt tcacgctctt ccgcgtccag ttcataacct tcgacatcca acattactgg
    19741 acccacactg ctctccttat tgttttatta atagctgccg ccaggtgtca tcggccagcc
    19801 tgataaattg ttgatcgccg gtttgtcgcc agcggtactc aaaccaccct gctttgagca
    19861 tcagcagcca gggaaaccat cgcctgacct gacgccataa ttgcgccgga taaatcttcg
    19921 cgcgagtggc atagtcattg accaattgcc ggtgctgttc agtattttcc acccacaccg
    19981 ccgccagttc cagcgcggta tcaccatctc cggcatactc ccagtcgatg agttttaacc
    20041 ctgatgcgct atgcactaaa tttccggcgt ggacatccat atgcaatgga cttaagcgta
    20101 aaggtcgtgg ttcccgcgct ttgcgcagac gttttaacat tcgcagccaa cccacagtcc
    20161 gccgcgccgg atcgctttgc tgccagtaca gttccagtaa cggcaacagc gttattcgcc
    20221 agccaaaacg tggttgttga tgtagataat acagcaagcc tgccagttcg ttggtatccg
    20281 gcaaatacgt ttttaccgcg ccgggcagat agtcgactac catccagtca cggagatata
    20341 aatgcggctt cggtgcaatg cttgcgggta gttgtgataa agcccgatac tggcgcaaga
    20401 acgcggactg cggcgcatca ggatcgtgcg gctgacgcac aacaaaacgc tggccctgat
    20461 gttcaatgag aaaactaccg ccactaagcc cactattaaa cgtcgtgacg ggatgaaact
    20521 gcgggaaaaa gcgcgacagc aattcgtcgc gcgtgatggg attattactg cgaaacggca
    20581 cctttacctg accagataat ttcgcccgtc tgcaccagca tcagctgcat ttgtagggtc
    20641 ggagcgttaa cgttgccaga ggcgctggag tacagcacgt aatgagcgcc gacattgcgg
    20701 gcaatgccta tggctttact acgggtgcct aaactgtcct gcggcgacaa acctaactgt
    20761 tgcttagcca tcgacagttg ctgggcggaa accagggtaa atttcccgtt attagccagc
    20821 gcatttcgca gcgtttcggt cgcttctgcg gcattcagcg aaccgttagt acggttgtta
    20881 acgctatcaa ccagcaggac gctacccgca gtcaccccgt cagccccaag catcttactg
    20941 actatcggct gcattgcgcc attccagtca taatggcgaa tatgcggcgc aggcggtgcc
    21001 gttcgatctt cgtgctcaat tgggcctggc tgctgcggga tcgtcggcac cgagggcact
    21061 gtggggacag gctgttgtgg ctcggctggt tgttccggcg ctggtttcac ttcttctacc
    21121 ggtgcaggtt cacgttgccc cacacacccg gcgagaaaca tcgccagcgc ggtaatcaag
    21181 gcgtagcgac tcatttttgt catcaagatt caccccttac aaatatagat aaagtctgac
    21241 tttgtgcgcc cccagaaaat tggcgctgcc gtacagcgtt accgccgaat gtgcgggaat
    21301 ggtaacgctg cgtggccttt ccagaggatg catctccagc cctctggcgt cataccagta
    21361 aaaacgataa tgaacggtaa cgggtttttg cctttcgtta taaagcgttg aggatgctga
    21421 aggttgaata tcagacgtcg aaaggacggg cttttctgca ctgatgcccg cagccaataa
    21481 agatgactcc atcaccagcg attgctcatc attcaccgga atttccggat gtgaacgaca
    21541 gcccaccagc agtaacaaca ccagagacac cagcccaaag catccttttc tcatcgttac
    21601 agacctttat gcgccagcat tggtcccagc ggacggccac ccaacaagtg catatggatg
    21661 tggtaaacct cttgtccgcc atggcggttg gtattcatga tcagacgata gccatcttcg
    21721 gcaatacctt cttgctcagc aatttttgcc actacggtga tcatgcgtcc cagcgcctgc
    21781 tcatgctcag ctgagacgtc gttcacagtc ggaatgagga tattcggaat gatcagaata
    21841 tgcgttggcg cttgcggcga aatatcgcga aacgccgtta ccagatcatc ctggtagacg
    21901 atatcggagg ggatctcacg acgaataatt ttgctgaata tagtttcttc tgccacgaca
    21961 ttttcctttt tcaaatagcc atgcgttgcg ccatgctacg ccgcgccaca ctgcgagtat
    22021 agagtatggt cgagttaaac ctgctctttc aaccttaact cacgatttct taagcaaaaa
    22081 atcgttttgc tgccgtatat atcgccatta ttcccatttc tgcctgcgaa tgcgctgaaa
    22141 agacattctc tgtttggttt acacgacaaa tatgaatgcg tatatttctc atttgcattt
    22201 acaaacaaaa ttattcgcac actaaatata atcgctcatc accctcctcc ggcatgagcc
    22261 tgacgacaac ataaaccatg agatttcaaa tgctttcaac acaatttaac agggataatc
    22321 aatatcaagc catcaccaaa ccgtcactac ttgccggttg catagcactg gcactattac
    22381 cttctgccgc ttttgctgca ccagccactg aagaaacggt gattgttgag ggttcagcca
    22441 cagctccaga tgatggcga
//
LOCUS       DAJVUP010000061        21959 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.061, whole genome shotgun sequence.
ACCESSION   DAJVUP010000061 DAJVUP010000000
VERSION     DAJVUP010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 21959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21959
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.061"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..897
                     /locus_tag="OQQ75_002076"
     CDS             <1..897
                     /locus_tag="OQQ75_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HCS1976409.1"
                     /translation="GPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSE
                     SLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMY
                     GLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQ
                     SGISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGISDILTLDETIKRNPQAL
                     VQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEATR
                     NTRILERQPRVISHEQQMRFSQ"
     gene            869..1732
                     /locus_tag="OQQ75_002077"
     CDS             869..1732
                     /locus_tag="OQQ75_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjW family glycine radical enzyme activase"
                     /protein_id="HCS1976410.1"
                     /translation="MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM
                     GRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEV
                     LSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETG
                     WEKLLPVCDGAMLDLKAWGSECHQHLTGRDNQQIKRSICLLAERGKLAELRLLVIPDQ
                     VDYLHHIDELATFIKRLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRG
                     VSRLIFPALYL"
     gene            complement(1946..2728)
                     /locus_tag="OQQ75_002078"
     CDS             complement(1946..2728)
                     /locus_tag="OQQ75_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313363.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1976411.1"
                     /translation="MICRFIDTHCHFDFLPFSGDEEASLQRAAQAGVGKIIVPATEAE
                     NFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEVGLDL
                     FGDDPQLERQQWLLDEQLKLAKRYDLPLILHSRRTHDKLAMHLKRHDLSRTGVVHGFS
                     GSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQG
                     QPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG"
     gene            complement(2725..3798)
                     /locus_tag="OQQ75_002079"
     CDS             complement(2725..3798)
                     /locus_tag="OQQ75_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HCS1976412.1"
                     /translation="MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLD
                     EFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGN
                     LIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVI
                     RASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQ
                     WFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIAL
                     GSRIPALREDYKLGRLCGCYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVAND
                     TLVAEVIDAPQANDPTFNNEDLA"
     gene            complement(3920..4081)
                     /locus_tag="OQQ75_002080"
     CDS             complement(3920..4081)
                     /locus_tag="OQQ75_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HCS1976413.1"
                     /translation="MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLV
                     SLFMGRKRP"
     gene            complement(4208..4813)
                     /gene="osmY"
                     /locus_tag="OQQ75_002081"
                     /pseudo
     CDS             complement(4208..4813)
                     /gene="osmY"
                     /locus_tag="OQQ75_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418793.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone OsmY"
     gene            complement(5206..6795)
                     /gene="prfC"
                     /locus_tag="OQQ75_002082"
     CDS             complement(5206..6795)
                     /gene="prfC"
                     /locus_tag="OQQ75_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HCS1976414.1"
                     /translation="MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG
                     TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT
                     LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN
                     ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA
                     VGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWA
                     PAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV
                     RTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN
                     FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV
                     SRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSM
                     VNLRLAQERYPDVQFHQTREH"
     gene            complement(6886..7563)
                     /gene="yjjG"
                     /locus_tag="OQQ75_002083"
     CDS             complement(6886..7563)
                     /gene="yjjG"
                     /locus_tag="OQQ75_002083"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HCS1976415.1"
                     /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA
                     VNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVS
                     LLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGIAKPNKKIFDYAL
                     ELAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHLEQPEGIAPTWTVSSLHEL
                     EQLLCKH"
     gene            complement(7578..8024)
                     /gene="rimI"
                     /locus_tag="OQQ75_002084"
     CDS             complement(7578..8024)
                     /gene="rimI"
                     /locus_tag="OQQ75_002084"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1976416.1"
                     /translation="MNTISSLETTDLPAAYHIEQRAHAFPWSEKNFASNQGERYLNFQ
                     LTQNGKMAAFAITQVVLDEATLFNIVVDPDYQRQGLGRVLLKHLIDELEKRGVATLWL
                     EVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM"
     gene            complement(7993..8406)
                     /gene="holD"
                     /locus_tag="OQQ75_002085"
     CDS             complement(7993..8406)
                     /gene="holD"
                     /locus_tag="OQQ75_002085"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HCS1976417.1"
                     /translation="MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVAN
                     DLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQ
                     VASPALTELRANPTARAALWQQICTYEHDFFPRND"
     gene            8509..9540
                     /gene="rsmC"
                     /locus_tag="OQQ75_002086"
     CDS             8509..9540
                     /gene="rsmC"
                     /locus_tag="OQQ75_002086"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HCS1976418.1"
                     /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRA
                     HTQQFHHWQVLSRQMGDNARFSLVATVDDVADCDTLIYYWPKNKPEAQFQLMNLLSLL
                     PVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWG
                     EYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS
                     PKIRLTLCDVSAPAVEASRATLAANCVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ
                     TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA
                     IMTRQAKKG"
     gene            9808..9894
                     /locus_tag="OQQ75_002087"
     tRNA            9808..9894
                     /locus_tag="OQQ75_002087"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9842..9844,aa:Leu,seq:cag)
     gene            9923..10009
                     /locus_tag="OQQ75_002088"
     tRNA            9923..10009
                     /locus_tag="OQQ75_002088"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9957..9959,aa:Leu,seq:cag)
     gene            10045..10131
                     /locus_tag="OQQ75_002089"
     tRNA            10045..10131
                     /locus_tag="OQQ75_002089"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10079..10081,aa:Leu,seq:cag)
     gene            complement(10170..10406)
                     /locus_tag="OQQ75_002090"
     CDS             complement(10170..10406)
                     /locus_tag="OQQ75_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313355.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1435 domain-containing protein"
                     /protein_id="HCS1976419.1"
                     /translation="MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTP
                     VMLYHKQLRHYVLLPSCLALIAAIMLMIMNLNQG"
     gene            10547..11335
                     /gene="fhuF"
                     /locus_tag="OQQ75_002091"
     CDS             10547..11335
                     /gene="fhuF"
                     /locus_tag="OQQ75_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HCS1976420.1"
                     /translation="MAYRSAPLYEDIIWRTHLQPQDAGLAQAVRATIAKHREHLLEFI
                     RLDEPAPLNAMTLAQWSSPNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGL
                     MVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQQRMETL
                     ISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEK
                     TLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK"
     gene            complement(11373..12049)
                     /gene="bglJ"
                     /locus_tag="OQQ75_002092"
                     /pseudo
     CDS             complement(11373..12049)
                     /gene="bglJ"
                     /locus_tag="OQQ75_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418786.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator BglJ"
     gene            complement(12007..12732)
                     /locus_tag="OQQ75_002093"
     CDS             complement(12007..12732)
                     /locus_tag="OQQ75_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1976421.1"
                     /translation="MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDF
                     TLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLM
                     CPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERK
                     VLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELN
                     LPSVYGDAAEWNTAELRREMSHS"
     gene            13351..14121
                     /locus_tag="OQQ75_002094"
     CDS             13351..14121
                     /locus_tag="OQQ75_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HCS1976422.1"
                     /translation="MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMD
                     SVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGV
                     EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAIITFFASTAAMYIRQLLAQ
                     RHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMF
                     KGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV"
     gene            14112..14585
                     /locus_tag="OQQ75_002095"
     CDS             14112..14585
                     /locus_tag="OQQ75_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418783.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HCS1976423.1"
                     /translation="MGVIEFLFALTQDMILAAIPAVGFAMVFNVPVRALRWCALLGAI
                     GHGSRMILMTRGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA
                     YTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV"
     gene            14693..15232
                     /gene="dnaT"
                     /locus_tag="OQQ75_002096"
     CDS             14693..15232
                     /gene="dnaT"
                     /locus_tag="OQQ75_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaT"
                     /protein_id="HCS1976424.1"
                     /translation="MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYA
                     VTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFI
                     RLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK
                     RDVNTVSEPDSQIPPGFRG"
     gene            15235..15972
                     /gene="dnaC"
                     /locus_tag="OQQ75_002097"
     CDS             15235..15972
                     /gene="dnaC"
                     /locus_tag="OQQ75_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein DnaC"
                     /protein_id="HCS1976425.1"
                     /translation="MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAAL
                     ERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASF
                     IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL
                     SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM
                     DRMRLGNSLWVIFNWDSYRSRVTGKEY"
     gene            16021..16515
                     /locus_tag="OQQ75_002098"
     CDS             16021..16515
                     /locus_tag="OQQ75_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2501 domain-containing protein"
                     /protein_id="HCS1976426.1"
                     /translation="MMETVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNS
                     TTQEGGWSLASLTNLLNSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLE
                     KLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGL
                     NFIS"
     gene            16769..19060
                     /gene="opgB"
                     /locus_tag="OQQ75_002099"
     CDS             16769..19060
                     /gene="opgB"
                     /locus_tag="OQQ75_002099"
                     /EC_number="2.7.8.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol--membrane-oligosaccharide
                     glycerophosphotransferase"
                     /protein_id="HCS1976427.1"
                     /translation="MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNIT
                     LFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRHRR
                     HHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDP
                     KLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVAS
                     QCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKS
                     HGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVD
                     THHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIAAFINKIKASPWFKDTVIVVS
                     SDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNY
                     LGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGS
                     HFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELA
                     LSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRY
                     KADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITA
                     KAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGN
                     ILGHSPRKLGIGMVEIKVVEREG"
     gene            complement(19199..20221)
                     /gene="lgoD"
                     /locus_tag="OQQ75_002100"
     CDS             complement(19199..20221)
                     /gene="lgoD"
                     /locus_tag="OQQ75_002100"
                     /EC_number="1.1.1.414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-galactonate oxidoreductase"
                     /protein_id="HCS1976428.1"
                     /translation="MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDI
                     HAWGGNQPFFSYPRVLGHEICGEIVRLGKNIADLKNGLQVAVIPYVACQQCPACKSGR
                     TNCCEKISVIGVHQDGGFSEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAI
                     APGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDF
                     DAQLRAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHK
                     KETTMMGSRNATPEDFAKVGRLMAEGKITADMMLTHRYPFATLAETYERDVINNRELI
                     KGVITF"
     gene            20360..21274
                     /locus_tag="OQQ75_002101"
     CDS             20360..21274
                     /locus_tag="OQQ75_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313344.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1976429.1"
                     /translation="MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTT
                     VRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTLINQR
                     QLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQL
                     FELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHS
                     LLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLD
                     ATLALRNHLNSAKQSMIRSINENTRYAH"
     gene            21489..>21959
                     /locus_tag="OQQ75_002102"
     CDS             21489..>21959
                     /locus_tag="OQQ75_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1976430.1"
                     /translation="MEKENITIDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAM
                     LLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLD
                     RKGPRLMLGLGMFFWSLFQAMSGMVHNFTQFVLVRIGMGIGEAPMNPCGVKVIND"
BASE COUNT         5429 a         5730 c         5437 g         5363 t
ORIGIN      
        1 ggtccggtgc atgataaaat tttcacaaaa gggggctacg ggattgtgag ctgttacaac
       61 tcactgccgc tggcgggtgg tggcagcacg ctggtacgcc ttaacctgaa agccattgcc
      121 gagcgcagcg aatcgctgga tgacttcttt acgcgcactc taccgcacta ctgccagcag
      181 cagatcgcca tcatcgatgc gcggtgtgaa ttcctctatc aacaatcaca cttctttgag
      241 aatagcttcc tggtgaaaga agggctgatt aaccctgaac gttttgtgcc aatgtttggc
      301 atgtatgggc tggcggaagc ggttaacttg ctgtgtgaga aagaagggat tgccgcgcgc
      361 tacggtaaag aagccgccgc aaatgaagtg ggttatcgca tcagcgcgca actggcggag
      421 tttgtcgcca atacccccgt gaaatatggc tggcaaaaac gcgccatgtt acacgcacag
      481 tcggggatca gttccgatat cggcaccacg ccgggcgcgc gtttgccgta tggcgatgag
      541 ccagatccga tcatccatct gcaaactgtc gccccgcatc atgcttatta ttattccggc
      601 atcagcgaca ttctgacgct cgacgaaacc atcaaacgta atccgcaggc gctggtacag
      661 ctttgcctcg gtgcctttaa agccggaatg cgtgaattta ccgccaatgt cagcggtaac
      721 gatctggttc gcgttaccgg ttatatggtg cgtttgtcgg atttagaaaa atatcgcgcc
      781 gaaggttcac gcaccaacac cacctggctg ggcgaagaag ccacacgcaa cactcgtatt
      841 ctggaacgcc agccgcgcgt gataagccat gaacagcaga tgcgctttag tcagtaagat
      901 tatccccttc tcctgcgttg acgggccagg cagtcgtctg gctctgtttc tgcagggctg
      961 caatctgcgc tgcaaaaact gtcacaatcc gtggacgatg ggacgctgca atgattgcgg
     1021 agagtgcgtg ccacagtgtc cgcatcaggc gttgcagatt gttgacggca aagtgctgtg
     1081 gaacgctgtg gtctgcgagc agtgtgatac ctgcctgaag atgtgtccgc aacatgccac
     1141 gccaatggcg caatccatga gcgtggacga agtgcttagc catgtccgca aagcggtgct
     1201 gtttattgaa gggataacgg taagcggcgg cgaagccacg acccaactgc cgtttgtagt
     1261 ggcgctgttt actgctatca aaaacgatcc gcaactgcgc cacctcacct gcctggtgga
     1321 cagtaacggc atgttgagcg aaaccggctg ggaaaaatta ctcccggtgt gtgacggcgc
     1381 aatgctcgat ctcaaagcgt gggggagcga atgtcatcaa cacttaaccg gacgcgataa
     1441 tcagcagatt aagcgcagca tctgtttgct tgcagagcgc ggcaagctgg cggaactgcg
     1501 tttgctggta attccagacc aggtggatta tttgcatcac atcgatgagc tggcgacgtt
     1561 tatcaagaga cttggcgatg ttccggttcg cctgaatgcg tttcatgccc acggcgtgta
     1621 tggcgaggcg caaagctggg cgagcgccac gccggaagac gttgagccgt tggctgatgc
     1681 gttaaaggtg cgcggggtga gccggttgat atttccggcg ctctatttgt gacatgccgg
     1741 atacggccta cggttcggca cagacttgta ggcatgataa gacgcgacaa gcgtcgcatc
     1801 aggcattgtg cgccaactgc cggatgcggc gtgaacgcct tatccggcct acggttcggc
     1861 acaaacctgt aggcatgata agacgcgaca agcgtcgcat caggcattat gcgccgactg
     1921 ccggatactg cctacgaagg gtaaactacc cactaacgct aaacaacgca tacgtattat
     1981 taagcaacac ttcggcaatc tcatcttctg gttccgggcg caactcgcaa agcacgtcaa
     2041 acacccgcac agcctgttcc ggtcggttag gctgcccctg aaagccgttg agcggcatat
     2101 ccggcgcgtc ggtttccagc aacaacgatg ccagcggtaa ttttgcgatg acatcgcggg
     2161 ttttactggc gcgtggatag gtgatagtac cgcctacgcc gattttgtag cccagctgta
     2221 caaaccgctc ggcctgttgc aggctgccgg aaaaaccgtg aaccacgcca gtgcgcgata
     2281 aatcgtggcg tttaagatgc atcgccagtt tgtcgtgtgt gcgccgtgaa tgcaggatca
     2341 gcggcagatc gtagcgtttc gccagtttca gctgttcgtc gagtaaccac tgctgcctct
     2401 caagttgcgg atcgtcgccg aagagatcca gaccgacctc ccccactgcc accaccttcg
     2461 ccggacgcct ttccagcgcc tgctgtagct gctcaagaga cacatcgcta tgtttttcca
     2521 acatacctgg atgcaagccc aatgcggcat acagcggttg atatttttcc gctaacgcct
     2581 gcacacgggc aaaattttcc gcctctgtcg ccggaacaat gatcttgcct acgcccgctt
     2641 gtgccgcgcg ttgcaggctg gcctcttcat cgccactaaa cggcaggaaa tcaaaatggc
     2701 agtgggtgtc gataaaacgg caaatcaagc cagatcctca ttgttaaatg tcgggtcgtt
     2761 cgcctgcgga gcgtcaatca cttcggcaac cagcgtatcg ttggcgactg gcgcaggcgg
     2821 aataacgatc gattccggcg tcaccactgg caccagatgg cgggtaagcg gcgctttttc
     2881 agttaatagc ttgccaaccg tggcgaggaa ataacaaccg cataaacgcc caagtttata
     2941 gtcttcacgc agcgccggaa tccgactgcc aagcgcgata ctatgtaatg gcttcggcgg
     3001 ataaatttcg aatatccgca gcttgcccgg tggtttctca ataaattgct gaatgtcacg
     3061 atagctggtt tcatgatgct gcaccagatt gaccagcggc tgcaggctac tgtcacccag
     3121 ccagcgttcc atgcgtttga accactgcgg cgtgtagtac atttgtgacg gcacagtgcg
     3181 aatgacgacc aacgttttag cgccctgcct tgccgcctct ttaaccggaa tcgcatcact
     3241 gatcccgcca tccaggtagt taatgccttc cagcgacact ccgctacgat aaaagccagg
     3301 tatcgcactg gaggcgcgaa tcacatccag ccagttttgt ttggttggta aaaagtaatt
     3361 aggcgcgtag tcatcctgac gacaggcgca catataaaac gatttgccgc tgtcaaacaa
     3421 ccgcgcggcg gtatccattt gcaacggcat ctggcttgcg gtggcctcca ccagccagtc
     3481 gagatcgata agatttcctc cacggacaaa gcgcaatgga tcgaaaaatt cgcgttttgt
     3541 ggtatagcgc atgatgactt tacgcgcgta accgggctga ttgcagataa acgccgagag
     3601 gttctgcgcc ccggcagatg tgccgagata aagatcgaaa ggattaaact gcgcgcgcat
     3661 aaactcatcc agcacgccag ccgtgaaaat tccacgctgt ccgccgcctt cgcacaccag
     3721 agctattcgt ccaggctgga acggccttag cgacaacggc gcaatattac caagcgttac
     3781 aggtattcgc tgccccacct ctgccttcct gtttttgttg tgaaagaatg acaaagtaac
     3841 gcaatttatt attcgctaaa accgcaaaag ccagtccgct ggactggctt tggataaaat
     3901 tttcttaatg gtctgaaatc tagggtcgtt ttcggcccat gaacaaactc accaggaaca
     3961 gaataatccc gacgacaaag acaattttag ctgcgcctgc agcggtaccg gccaaaccac
     4021 caaacccaag tgcggcggcg attaacgcga taaccagaaa tatgatgccc caacgaaaca
     4081 taagcgtctc ctttaccata gttaatgtca ccgcttgata tgagcgtgaa aatcactcaa
     4141 tgcgatattt ttagtgtggt gcacatcgcg cctcccgaca aagttcggga ggacgaatta
     4201 cgacgaatta cttagttttc agatcatttt taacgctttt cacaccatct accgctttgg
     4261 cgatactttc agcacggtca ctttgtgcct gagaatctac ggtaccggag agctgaacca
     4321 cgccgtcggt ggtttcaact ttcacatgac gggaagggac gatatcgtcc gccagcagtt
     4381 tggctttgat ttcactggtg gtggcggtgt cacccgcgta gcccttcacc gagccttctt
     4441 tagcgtcgcg aacgtgcagt ttgtcgctga cagaggtcac cccttcaacg cctttcgcca
     4501 ctttcactgc ctcttcggcc tgagcctagc tttcaacgaa accgctcagg gtcacgactt
     4561 tttgctcggt tttgacagag atatcggtgc tcttgatgtt gtcatgatcc accagcgccg
     4621 ccttcacttt cgcggtgatg gcgctgtcat ccatgaaatt accgacttta ttcatagagc
     4681 tatcgacttt ttgccctgcg ctttcattgg tagtctgtgc gttgttttcc gcgtaggcag
     4741 agccggtcgc gacggcagag gtcaacatta cagccagcag agttttcgaa atcttcagtc
     4801 ttgtcatagt catcgattta ttcctgtatg tttgctcgta atttgagcct ggcaacacga
     4861 ggttgcattg ctgaataggg agagacttca ccctctacag aagtcaatgg ccgccatcac
     4921 aaaagcgatg ggtgatgaat aacgaccatt acagcctctg aatcagttat taatatcggt
     4981 agaatgacaa tcgacggctt tagatactga tatctacgca ttgaacggta tttaacgccg
     5041 tcagaaatgt cattactttg ttaaatatag atcacaattt tgaaaccgct cgtgatatca
     5101 gcgaaaacat aagcaaaagt gaatgtttta agaacattcc gtaagcggct aataaggaag
     5161 ggaaattgac agggcgcagc ggctaccgcg ccctggaggc aagaattaat gctcgcgggt
     5221 ctggtggaac tgaacgtcgg gataacgttc ctgcgccagg cgcaggttga ccatgctggt
     5281 agcgatgtaa gcgaggttat cgccgccatc aagcgccagt tggctttcgt tcttacgctt
     5341 gaactcttcg aatttcttcg cgtccgcaca ttctacccag cgggcagtgg caacgttgac
     5401 tgattcatat actgcttcaa cgttgtattc gctcttcagg cgcgatacca ccacatcaaa
     5461 ctgcagcaca ccaacagcac caacgatcaa atcgttgttg gagatcggac ggaacacctg
     5521 caccgcgccc tcttcggaaa gctgtaccag ccctttgagc agctgttttt gcttcagcgg
     5581 atctttcagg cggatacgac ggaacagttc tggtgcgaag ttcggaatac cggtgaactt
     5641 catcatctca ccctgggtaa aggtgtcgcc gatctgaata gtgccgtggt tgtgcaggcc
     5701 gaggatatcg cccggatacg cttcttcaac gtgcgaacgg tcgcccgcca taaaggtcag
     5761 cgcgtcggag ataaccacat ctttcgcagt acgcacctgg cgcagcttca tgcctttttc
     5821 atatttaccg gatactacgc gcataaacgc cacgcggtcg cgatgtttcg ggtccatatt
     5881 ggcctgaatt ttaaatacga agccggtaaa tttgtcttcg ctcgcctcta cggtacgggt
     5941 atcagtctga cgcggcatcg gcgcaggggc ccactccacc aggccatcca gcatatgatc
     6001 aacgccgaag ttacccagcg cagtaccgaa gaataccgga gtgatttcgc ccgcaaggaa
     6061 cagttctttg tcgaactcgt tagacgcgcc tttcaccagt tccagttcgt cacgtagctg
     6121 ctgtgccaga tcttcaccaa ccgcagcgtc gagatccggg ttattcagcc ctttaacaat
     6181 acggacttcc tgaatcgtgt ggcctttacc gctctgataa agataggttt cgtctttata
     6241 aaggtggtaa acgcctttaa acagcttgcc gcagccaatc ggccaggtga tcggtgcgca
     6301 gccaattttc agctcgttct caacttcatc gagcagttcc atcgggtcgc ggatatcacg
     6361 gtcaagtttg ttcataaagg tgaggatcgg cgtgtcgcgc agacgggtaa cttccatcag
     6421 cttacgggta cgatcttcaa caccttttgc agcgtcgata accatcaggc agcagtccac
     6481 cgctgtcagg gtacgatagg tatcttccga gaagtcttcg tgccccgggg tgtctagcag
     6541 gttaaccagg caatcgtgat acggaaactg catcacagac gtagtaatgg agatcccacg
     6601 ctgcttttcc atctccatcc agtccgactt agcgtgctgg ttggaaccac ggccttttac
     6661 tgtaccagcg gtctgaatgg cctgtccgaa cagcagcacc ttctcggtga tggtagtttt
     6721 accggcgtcc gggtgagaaa taatggcaaa agtgcggcgc ttcgccacct cttgcaaata
     6781 aggagacaac gtcataattc tttcttcttg agtaagcggc atcgcgccgc gcttgttgaa
     6841 aacgaaaaat tgcggctatt ttacccatca acggggggga ggcaatcagt gtttacacag
     6901 gagctgctcc agttcgtgca acgatgaaac ggtccaggtg ggcgcgatgc cttctggttg
     6961 ctcgagatgg tgcgcattca gccagcaagt cgcaagcccg gcgttgatgc caccgagaat
     7021 atcggactcg gcagtgtcgc caaccatcag cacgcgtgaa cggtcaggat tgcccgccag
     7081 ttccagcgca taatcgaaaa ttttcttatt cggtttggca atgccaactt cttcggaaat
     7141 caccagcaaa tcaaagtaat cacgcaggcc cgtccgttcc agacgcactt gctgcaaggc
     7201 gctaaaaccg ttggtgatga tgccgatttt agcgttgcca cgaatggcgt taagcagaga
     7261 aaccgcgccc ggcagcggcg tgcagatttc cgccatcgca ttaataaagg catcgttaag
     7321 caagcctgct tcaactttca gccgttcggc ccagctctcg aaacgcccgt gctgaagctg
     7381 taatgaagtg atcgcgccgt tttgataatc cacccacagt ggcttgttaa cggcctgata
     7441 gtcctgaaaa tcttcagcgg taaaggtgac gctgtaatca agaaacatcc gctgcaggcc
     7501 ggtgaatgag tcaaaggtaa acagcgtttc atcggcatca aagaaaatcc agtcccactt
     7561 cattattcca ccttgtctta catactgatt ggcaacgcca tgatgatggc gtcttcgcga
     7621 ccgtccgtgg tggggtagta attgcggcga atcgtcgcct cgttaaagcc taaactttcg
     7681 tacagggcaa tggcggcagc gtttgaagca cggacttcca gccatagtgt cgccacgccg
     7741 cgtttttcca gttcgtcgat cagatgtttc agcagcaccc ttcccaatcc ctgacgctga
     7801 tagtcaggat cgaccacaat attgaacaat gtagcttcat ccagcaccac ttgcgtaata
     7861 gcaaacgccg ccattttgcc gttttgcgtt aactgaaagt tgagataacg ctcgccctgg
     7921 ttgctggcaa agtttttttc actccacgga aaggcgtggg cgcgttgttc aatgtggtaa
     7981 gccgctggta aatcagtcgt ttcgagggaa gaaatcgtgt tcatatgtgc aaatctgttg
     8041 ccataacgcg gcgcgtgccg ttgggtttgc ccgtaattcg gtgagcgccg gtgatgccac
     8101 ctgagcgcct tccagtgata gcggttcgtc agtacccaac cgccagctgt tgcagcgact
     8161 gccttgcggc agcatcgcga ttttttctgg cgtcagttgc agcacttgat cggggctgac
     8221 ggttaatgcg cgcagaacat cgctcactaa aggatcggtc agggcgggaa gatcgtttgc
     8281 caccatcacc agacggacgt gtgccgggat cgcaatggca atctccccct gcaacgcgcc
     8341 agggcgacgc agcgaccact gggtaatgcc cagttgctgt aactgccagt ctcgtcggga
     8401 tgtcatagcg aatcgctcct gttgtcaggg gcgcaaatat agcaaattcg tcgataccgc
     8461 gccaacatat ggctataatc gccgccagta tcaattgagg agcattccat gtctgcattt
     8521 accccggcaa gtgaagtctt gctgcgtcac agtgatgatt tcgaacaaag ccgtattctg
     8581 tttgccggag acttacagga tgacctgccc gcgcgtttag ataccgcggc cagccgtgct
     8641 catacccagc aattccacca ctggcaggta ttaagccgcc agatggggga taacgcccgt
     8701 ttcagtctgg tcgccacggt ggatgacgtc gcagattgcg atacgctgat ttactactgg
     8761 ccgaagaaca aaccggaagc ccagttccag ttgatgaatt tactttctct gctgccagtg
     8821 gggacagata tttttgtcgt tggcgagaac cgcagcggcg tgcgcagcgc cgagcagatg
     8881 ctggcagatt atgcgccgtt gaataaagtc gacagcgctc gtcgctgtgg cctctatttt
     8941 ggtcgtctgg aaaaacagcc ggtatttgat gccgataaat tctggggcga atacagcgtc
     9001 gatggcctga cggtcaaaac gctgcctggc gtgtttagcc gcgacggtct ggatgtcggt
     9061 agccagttgc tgctctcgac gttaactccg cacacgaaag gtaaagtgct ggatgtcggc
     9121 tgtggcgcgg gggtgctttc agttgccttt gcgcgccatt cgccgaaaat tcgtctcacc
     9181 ttgtgcgatg tctctgcgcc agcggtagaa gccagccgcg caacacttgc ggccaactgt
     9241 gttgaaggtg aagtctttgc cagcaacgtc ttttccgagg tgaaaggtcg ttttgatatg
     9301 atcatctcca acccgccgtt ccacgatggg atgcaaacca gcctggatgc ggcgcaaacg
     9361 ctgattcgcg gcgcggtgcg tcatcttaat agtggcggcg agctgcgaat tgtagcgaac
     9421 gccttcctgc cttatccgga cgtgctggat gaaacatttg gcttccatga agtgattgcg
     9481 caaaccgggc gtttcaaggt atatcgcgcc attatgaccc gccaggcgaa aaaaggttaa
     9541 gtatcccgcc gcaagccttg ccggatgcgg cgtaaacgcc ttatccgacc tacaaaacct
     9601 gcacgttagc ccttcgtagg ccagataaga cgcgccagcg tcgcatctgg catctgcccc
     9661 cgcatgccta ccaaacctgc acgctagttt cctgatggac atttttccag caattacacc
     9721 tccggcgata attaactatt gacgaaaagc tgaaaaccac tagaatgcgc ctccgtggta
     9781 gcaattcttt ttaagaattg atggtatgcg aaggtggcgg aattggtaga cgcgctagct
     9841 tcaggtgtta gtgtccttac ggacgtgggg gttcaagtcc cccccctcgc accaaaaacc
     9901 acgttgatat tgctcgcact gggcgaaggt ggcggaattg gtagacgcgc tagcttcagg
     9961 tgttagtgtt cttacggacg tgggggttca agtccccccc ctcgcaccaa acgaggcgat
    10021 atcaaaaaaa agtaagatga ttgtgcgaag gtggcggaat tggtagacgc gctagcttca
    10081 ggtgttagtg tccttacgga cgtgggggtt caagtccccc ccctcgcacc aattatcttt
    10141 acttcctttc ttgtttcttc cttgattttt catccctgat tcaaattcat tatcatcagc
    10201 atgatggcag caataagcgc caggcacgat ggtagcaaaa cgtaatgccg taactgtttg
    10261 tgatacagca tcaccggcgt caatactaat cccatcagaa tgacaatccg ccactgatcc
    10321 ggcgataaat ccgcatacat cagccctgca atcagcaatc ccggcagcaa cactccccag
    10381 ccactgccca gcgtacgttg caacatggtt tcatctcttt cattgataat gataactaat
    10441 atcatatgat aatttttatc atttgcaagc cagagaaatc ccttgctatc gggtaaacct
    10501 atcgctagga ttagcaatca ttatcattta gattactatc ccgattatgg cctatcgttc
    10561 cgcaccgctc tatgaagata tcatctggcg aacgcatctc cagccgcagg atgctgggct
    10621 tgcacaagcc gtacgtgcga cgatcgccaa acatcgtgaa catttgctcg agtttatccg
    10681 cctggatgaa cccgctccgc ttaacgccat gacgctggcg caatggtcat caccgaatgc
    10741 gctaagttct ctactcgcgg tctattccga tcatatctat cgcaaccaac caacgatgat
    10801 ccgcgagaac aaaccgctga tctcactatg ggcacaatgg tatatcggcc tgatggtgcc
    10861 accattaatg ctggcgctac tgacgcagga aaaggcatta gatgtgtcgc cggaacattt
    10921 ccatgctgag tttcacgaaa ccggacgcgt cgcctgtttc tgggtcgatg tgtgtgaaga
    10981 taaaaacgca acaccacatt cgccgcagca gcgaatggaa acgttaatca gccaggcgct
    11041 ggttccggtt gtgcaggcac tagaagcgac cggagagatc aacggcaaac ttatctggag
    11101 taataccggt tatttgatca actggtatct cactgagatg aagcaactgc tcggcgaggc
    11161 gacggttgaa tcgctgcgcc atgccctctt ttttgagaaa acgctcacga acggtgaaga
    11221 taatccactc tggcgtaccg tcgtgctgcg cgatggcctg ctggtgcgcc gaacctgctg
    11281 ccagcgttat cgcttaccgg atgtgcagca atgtggcgat tgtacgctga aatgaaagca
    11341 ctgccgggga agtaaacccg gcatcatgcg gattaatagg gatgcaacac attacttgct
    11401 tcgcaatgcc gcatacataa cagaatatct gcggcctcca acacccctgc atcagaactg
    11461 acgcccagtt tcgacatcac attaaattta tgtgcacgga tcgttttgat attgcgttta
    11521 agctgctcgg caatttgtgt cattgagtag ccacgcgaca taaagcgcaa tatttctctc
    11581 tccgtcgggc ttagcgtccg gctttggtta atgtaccact gattgttcag tcggtcggtc
    11641 gcctgacgta caccatttaa tgacaaaaag agttcctgat gaaaaatctc cagcgttgac
    11701 gctttactta atacaccgtc cagcggtgat ggcgacaatg aaccaatcag ccgagcttca
    11761 atatcatcat ccgcaataac taaacgccgg gtacgcggaa acttaatcgc cagttcagtc
    11821 aggcaagata atccctctct gcgctcactt ctcatggcag aaaaagaaaa atgaccgccg
    11881 caaatgagat ccgcgacatg gcatcctgaa atgactcctg actggtatag gtatggagct
    11941 tataagggtt acccgcaaac tttctgaata aactctcaat accgatactg ctcatgacgc
    12001 atttttctat gagtgcgaca tttctcttct taattcggct gtgttccatt ctgcggcatc
    12061 tccataaaca gaaggcaagt taagttctct tgcaccctgc gcgctattta tccatgcata
    12121 catttcagcg ttgctgtgaa ttgccagtcg acgcatcgca ctgttttttt gggcgctgat
    12181 agttttatta cttttcttaa gcaacgaaac tatctggttg atgccccatc ctttacctaa
    12241 tagccgcagt accttgcgct ctgaaagagt gagaatgacg gagcgatagc taaaatcatg
    12301 agtttcattc attgccggag aggtcagcat ggcgctgata cgctctgcgt gcgtattgcc
    12361 ggaacgtacg gtcttgacca gattctcaat gggttcaaca tcagacaata acgtcgccgt
    12421 agggcacatg agcaattcta ctgcctggga ataccaggag cgtgacacca tgaaaaccca
    12481 gtgaatttcc cgatattgtg agattaaaga ataataatgt tcacaaacag aacgtggatc
    12541 ttcactttca ccggctaaat cagcaatgac taatccggaa cgacgtaatt gtaataaggt
    12601 aaagtcctcc gcagaggcgc tggatattat ttcatattca gggaagtgag tcctcatgac
    12661 ctcttttaac cctgcttgca taacaggtat tttactgata acaattccat ttttgcagca
    12721 tcctggcaac atatttcctc cacatccact gtctaaaaat catgatggtt tattcaggat
    12781 attcattcct taaatgtttc cagcaaatta atagattaag cgaataaatt atccttagca
    12841 ttcactttca tatcagcata ctcctgctgc acaacaactc cactgcatgt gtcagaaggt
    12901 tagcatcaaa tgataacctg gtgaaatagc ctggagacat ttaaaatatc tacattaagt
    12961 tgttaggaat acttaatgaa aaacagaaat cacattcatt taatttataa ttaaatgata
    13021 tcccttcccg cagaatgaaa agtcacacaa ccaatattta ttcaatgaaa tctgatggtt
    13081 ttaacttgtt aacattaaaa aacgtgcccg gttatctatt atcctgattc gtaaaggcca
    13141 aacaataaat tcattatagt gataatattc atgtgatagt ttgtttgcgg cgagagataa
    13201 ttcgcttttt atcaccgagc ttgtcccgat aaccaggatt aatcagcgca attttgatct
    13261 taacctaccg caaaacaacc gtgcttcatg atacaaatgg attctcatta tctgaacaat
    13321 acgcagcacg tctatgacaa agggcgagtt atgcaaactg agcaacagcg agccgtaaca
    13381 cggctttgta tccagtgtgg attatttctt ttgcaacatg gtgcggaaag cgcgttggtt
    13441 gatgagcttt cctcacgact gggtcgggcg ttggggatgg acagcgtcga aagttctatc
    13501 tcttcgaacg ccatagtgct gacaaccatt aaagatgggc aatgcctgac atcgacacgt
    13561 aaaaatcacg atcgcggcat taatatgcat gtggtgactg aagtccagca cattgtgatt
    13621 ctggcggagc accatctgct ggattacaaa ggcgtagaga aacgatttag ccaaattcag
    13681 ccattacgtt acccaagatg gctggtagcc ttaatggttg gcctttcttg cgcctgtttc
    13741 tgcaaactca ataaaggtgg ctgggatggt gccatcatca ccttctttgc cagtacggcc
    13801 gcgatgtata tccgccagct gctggcacaa cgtcatcttc atccgcagat caacttttgc
    13861 ctcaccgctt tcgccgccac caccatttcc ggattgcttt tgcaacttcc cactttcagc
    13921 aatacaccca ctatcgcgat ggccgccagc gttctgctgc tggtgccggg atttccgttg
    13981 attaatgccg tcgccgatat gtttaaaggc cacatcaata ccggactggc acgctgggcg
    14041 atcgccagtc tgctgacact ggctacctgc gtcggcgtgg tgatggcact gacgatttgg
    14101 gggctacgcg gatgggtgtg atcgagtttc tgtttgcatt gacgcaggat atgatcctcg
    14161 ccgccattcc agcggtcggc tttgcgatgg tgttcaacgt tcccgttcgg gcattacgct
    14221 ggtgtgcgct gcttggcgcg attggtcatg gttcacgaat gatcttaatg accagagggc
    14281 tgaatattga gtggtcaacc tttatggcct ccatgctggt cggcaccatt ggtattcaat
    14341 ggtcgcgctg gtatctggcg catccgaaag tgtttaccgt ggcggctgtt atccctatgt
    14401 tcccgggcat atcggcttat accgcaatga tttcggcggt aaaaatcagc cagttaggtt
    14461 acagcgaacc gttgatgatt accctgttaa ccaactttct tacagcttca tcgattgttg
    14521 gtgcgttatc catcggtctt tccattcctg gattatggtt gtaccgcaag cgccctcgcg
    14581 tataaaattg cctcgcttaa agcacacgga tgagagacag cctcctctcc tccgtgtgtt
    14641 actataaaag ttatctccct tctcgttcat cgttccatat ttgagaaaca gtatgtcttc
    14701 cagagttttg accccggacg tcgttggtat tgacgccctg gtacacgatc accaaaccgt
    14761 tctggcaaaa gctgaaggcg gtgtggttgc cgtatttgct aacaatgccc cggcgtttta
    14821 tgccgtcacg cctgcacgcc tggctgaact gctggcgctg gaagaaaagc tggcgcgtcc
    14881 gggaagcgat gtcgctctgg acgatcaact ctatcaggaa ccgcaagccg ctcccgttgc
    14941 tgtacccatg gggaaattcg ccatgtatcc ggactggcaa cccgatgccg attttatccg
    15001 cctggcggcg ctatggggtg tggcactaag agagccggtg accaccgaag aactggcctc
    15061 attcattgcc tactggcagg cggaaggtaa agtctttcac catgtgcagt ggcaacaaaa
    15121 actggcgcgc agcctgcaaa tcggtcgtgc cagcaacggc ggactgccga aacgagatgt
    15181 gaatacggtc agcgaacctg acagtcaaat tccaccagga ttcagagggt aacgatgaaa
    15241 aacgttggcg acctgatgca acgcctgcaa aaaatgatgc ctgcccatat caaacctgca
    15301 ttcaaaacgg gtgaagaact actggcctgg cagaaagaac aaggagcgat ccgctccgcc
    15361 gctctcgaac gtgaaaatcg ggcgatgaaa atgcagcgca cctttaaccg ctccggtatt
    15421 cggccactgc atcagaactg ctcctttgag aactatcgcg ttgagtgtga agggcagatg
    15481 aatgcgttaa gcaaagcgcg ccagtacgtc gaagagtttg acggcaacat cgccagcttc
    15541 atcttttctg gtaagccagg aaccggcaaa aaccatctgg cggcggcaat ctgcaacgag
    15601 ctgctgctac gcggtaaatc cgtattgatc atcaccgtgg ccgatattat gtcggcgatg
    15661 aaagatacct tcaggaatag cggtaccagt gaagaacaac tgcttaacga tctgagcaac
    15721 gttgatctgc tggtgatcga tgagatcggc gtgcagaccg aatcgaaata cgaaaaagtg
    15781 atcatcaacc agatcgtcga tcgccgctct tcttccaaac gcccaaccgg gatgctgacc
    15841 aacagtaata tggaagagat gaccaagttg ctgggcgaac gcgtgatgga ccgtatgcgc
    15901 ctgggtaaca gtttgtgggt gatcttcaac tgggatagct accgtagccg ggtaacaggt
    15961 aaagagtatt aatccccgtt tctggcggta tactgcgaca caattccacc ttgagtaatg
    16021 atgatggaaa ctgttaaaca tcttctgtgc tgtgccattg ccgccagcgc attaatttcc
    16081 accggggtgc atgctgcgtc ctggaaagat gcgctctcca gcgccgccag cgaacttggc
    16141 aaccaaaaca gcacgacaca ggaaggcggt tggtcgctcg cgtcattaac taacttgctt
    16201 aacagcggga accaggcctt aagcgcagat aacatgaaca acgccgcagg cattctgcaa
    16261 tactgcgcga agcaaaagct ggcgtcggta accgatgccg aaaacatcaa gaaccaggtg
    16321 ctggaaaagc tgggcctgaa cagtgaagag caaaaagaag acaccaacta tctggatggc
    16381 attcagggtt tgctgaaaac caaagatggt cagcaactca atctggataa catcggaacg
    16441 actccgctgg cagaaaaggt gaaaaccaaa gcctgcgatc tggtgttaaa gcaggggctg
    16501 aacttcattt cctgaaccgc gaaacgccgc gttttagctg ttacccggct gacgcggctc
    16561 tctcctgccc ttttccctgc ttctggacgg ttttccccct gttacacggg aagcgaccgc
    16621 gatcaaaaaa gtctgtttat aaactaattc ctaacaacat cgcatttttt tgacactaga
    16681 attgcagcaa tatggcgacg ccattacatt gttcttctca aaaagcttaa acgttggcta
    16741 aacggcccgg tttagtgagg atcgcccgtt gtcagaacta ctctctttcg ccctttttct
    16801 cgcctctgtg ctgatttacg catggaaagc gggacgtaac acctggtggt ttgcagccac
    16861 attaacggtg ctggggctat ttgtcgtttt aaatatcacc ctgtttgcca gcgactattt
    16921 tactggcgat ggtattaacg acgcggttct ctatacctta accaacagcc tgaccggtgc
    16981 tggcgtcagc aaatacatcc tgccgggtat cggcattgtg ctggggctga cagcggtgtt
    17041 cggtgcgctg ggctggatcc tgcgccatcg tcgccatcat ccgcaccatt ttggttacag
    17101 cctgctggcg ctcttactgg cgctgggttc ggtggacgcc agcccggcat ttcgtcagat
    17161 aacggaactg gtgaaatccc agtcacgcga tggcgacccg gactttgcgg cttattataa
    17221 agagccgtcg aaaactatcc ctgacccgaa actcaacctg gtttatatct acggcgaaag
    17281 tctcgagcgg acctattttg ataacgaagc tttcccggat ctcacgcctg aactgggcgc
    17341 gttgaaaaat gaaggcctgg atttcagcca cacgcagcag ctgccaggaa cggattacac
    17401 gattgcgggc atggtggctt ctcagtgcgg cataccgctg tttgccccct ttgaaggcaa
    17461 cgcctccgcc tctgtctcca gcttcttccc gcagaacatc tgtctgggcg atatcctgaa
    17521 aaactcgggt tatcagaact atttcgtgca gggcgcgaat ctgcgttttg ccggtaaaga
    17581 tgtgttcctg aagtcgcatg gcttcgacca cttatacggc tcagaagagc tgaaaagcgt
    17641 ggtggccgac ccgcactatc gcaacgactg gggattctac gacgataccg ttctcgatga
    17701 agcgtggaaa aagtttgaag agctttcccg ctcaggtcag cgattctcac tgtttaccct
    17761 gacagtcgat acccatcacc cggatggttt tatctcgcgt acctgtaacc gcaaaaaata
    17821 tgattttgac ggtaagccga accagtcatt cagcgcggta agttgcagcc aggagaatat
    17881 cgcggcgttt atcaacaaaa tcaaagcgtc accgtggttt aaagataccg tcatcgtcgt
    17941 ctcttctgac catttagcga tgaacaacac ggcgtggaaa tacctcaata agcaggatcg
    18001 caataacctg ttttttgtca ttcgtggcga caagccgcag caagagacgc tggcagtgaa
    18061 gcgtaacacg atggataacg gcgcgacggt gctggacatt ctcggtggcg ataactatct
    18121 cggacttggt cgtagcagtt tatccgggca gtcgatgtcg gaaatcttcc tcaatatcaa
    18181 agagaaaaca ttggcgtgga agccggatat catccgcctg tggaaattcc ctaaagagat
    18241 gaaagagttc accatcgacc agcagaaaaa catgattgcc ttctcgggta gccatttccg
    18301 tttgccgctg ctgttgcggg tttcagacaa acgcgtggaa ccgctgccgg aaagcgaata
    18361 ctcagcaccg ctgcgtttcc agctggccga tttcgctcca cgcgacaatt tcgtctgggt
    18421 tgaccgttgc tataagatgg cacaactctg ggctccggaa ctggcactct ccaccgactg
    18481 gtgtgtctcg caagggcagc ttggcggtca gcaaattgtt caacatgttg acaaaacaac
    18541 atggcagggc aaaacggcat ttaaagatac ggtcatcgac atggcgcgtt ataaaggcaa
    18601 tgtcgatacg ctgaaaattg ttgataacga tattcgctac aaagccgaca gtttcatctt
    18661 caacgtcgcc ggtgcgccag aagaggtgaa acagtttagt gggatttccc gtccagagtc
    18721 gtggggccgc tggtccaacg cgcagctggg cgatgaagta aaaatcgagt acaagcatcc
    18781 gctgccaaag aaatttgacc tggtgattac cgccaaagca tacggcaata acgccagccg
    18841 tcctattccg gtacgcgtag gcaatgaaga acaaaccctt gtgctgggca atgaagtgac
    18901 caccaccaca ctgcatttcg ataacccaac cgatgccgac acactggtaa ttgtgccgcc
    18961 ggaacctgtc tcaaccaacg aagggaatat cctcggacac tcgccacgta agctcgggat
    19021 cggcatggtg gaaattaaag tggtggaacg tgaaggataa ttcctgactg atgtgtaggt
    19081 cgcataaggt gcgacctaca caccttctgc ggcctacaaa acatcattga gaaacagaaa
    19141 aaaacagcgc ccaacacttc cccggacgct gcatggcaac tttaataatc tcgccttatc
    19201 agaaagtaat tacaccctta atcaactcac gattgttaat cacatcgcgc tcgtaggttt
    19261 ctgccagcgt ggcgaacgga tagcgatggg ttaacatcat gtcagcagtg atttttcctt
    19321 ccgccatcag tcgaccgact ttagcaaaat cttccggcgt ggcgttgcgg ctacccatca
    19381 tcgtcgtttc ttttttatgg aattccggat cggagaactg caactcacct ttaaacaggc
    19441 cgacaaatac caccgtgccg ccgtgacgaa tcaaattcac ggtgttattc atcgcatgtt
    19501 gattacctgt cgcgtcgatc actttctgcg ccagcgaacc accaaactgc gcccgtagct
    19561 gcgcgtcaaa atcttcggct gacgggtcca gtaaaggtaa ttccagacgc gttgccacat
    19621 gttcacggcg cgccggactg gtatccgcca ccaccacctg tgcgccatcg gctttagcga
    19681 ttgccgccgc gcccagaccg attggccccg ccccgaccac cagcacctgc tcgccgggag
    19741 caatggctgc gcgacgcacc gcatgagcgc taatagcgaa aggttcaatc aatgctgccg
    19801 cctgcgggtc aataccgtct gcgggcaaaa tgttcgccac cggcacgctc aaatactcac
    19861 taaaaccgcc atcctgatgc acgccaatga ctgaaatttt ttcacagcaa ttggtacgcc
    19921 cgcttttaca cgccgggcat tgctgacagg caacataagg gatcacagca acttgcagac
    19981 catttttaag atcagcaata tttttaccca gcctaacaat ctccccacat atttcatggc
    20041 ctaaaacacg tggataacta aaaaatggtt gatttccacc ccaggcatga atatcggtac
    20101 cgcaaatccc gacagactta atttttatta atgcttcatt gtcacccgga ataggtatct
    20161 cgcgttgttt ccagactaat tctttcggct gctggcaaat taaaacattc atcgtagaca
    20221 tgattcggct ctccattttt tgttgcctta gatatcaatg aaaatgaaaa atggcagcgg
    20281 aacggaaaat ctgttttgtg aaaacacacg cataaaaatg ttttaaatcg ggttttaatg
    20341 gactcacaag gaggaaaata tgagtcgttc acaaaattta cgccacaatg tgattaacca
    20401 ggtcattgat gatatggcgc ggggtcatat cccttcccca cttccatcgc aaagtgcgct
    20461 ggcggaaatg tacaacatca gccgcaccac agtgcgtcat attctcagcc atttacgcga
    20521 atgcggcgtc ttgacgcagg ttggaaacga ctatgttatt gcgcgtaaac ctgaccacga
    20581 tgacggtttc gcctgtacta ccgcttcaat gagtgaacaa aacaaagtgt ttgagcaggc
    20641 ttttttcacg ctgataaacc agcgccagtt acgcccaggg gaaacttttt ctgaactgca
    20701 actggctcgg gccgcgggtg tcagcccggt ggttgtaaga gaatatcttt taaaattcgg
    20761 ccgttataat cttattcaaa gcgaaaagcg cggccagtgg agcatgaagc aattcgatca
    20821 atcctacgcc gagcagctgt ttgagctacg cgaaatgctc gaaacacatt cacttcagca
    20881 ctttctcaac ctgcctgatc atgatccccg ctggctgcag gcgaaaacca tgctcgaacg
    20941 tcatcggcta ctgcgtgaca acatcggcaa tagctttcgc atgttctcgc aacttgacag
    21001 agattttcac tccttactgc tttcagctgc cgacaatatc ttttttgatc aatcgcttga
    21061 gatcatctca gtcatctttc attttcacta tcaatgggac gaaagcgatc ttaaacagcg
    21121 caatatcatt gccgtcgatg agcatatgac cattctcagc gctctgattt gccgcagtga
    21181 cctcgatgcc acccttgcgc tccgtaacca tttgaattca gctaaacaat caatgattcg
    21241 atccattaat gagaacacgc gttatgctca ttaagtacgg attaaaaaca gcaaactatt
    21301 agcgggtgca cggttttatc aaaagataaa taccgggaaa ttcccgctta cctatgctca
    21361 caatcagtcg actaaaaatg tttttgtgag cggtagtaaa gtcctaaaac tttaacctgc
    21421 cgttaatgtc aaccatgcgt aatgcacaat tacgtaaaca attaaaatta taaatacagg
    21481 agtccggcgt ggaaaaagaa aatatcacca tcgatccgcg ttcttcattt actccatctt
    21541 cgtcggcaga tattcccgtg ccaccagatg gattagttca acgcagtacc cgaattaaac
    21601 gcattcaaac caccgccatg ttgttattat tttttgcggc ggtaatcaat tatctcgacc
    21661 gcagttcgct gtcggtagca aatttaacga ttcgtgaaga attgggatta agtgccactg
    21721 aaatcggcgc tttgctctcc gtgttttcac tcgcttacgg gattgcgcaa cttccttgcg
    21781 gcccactatt ggatcgtaaa ggcccacgcc tgatgctggg actgggaatg ttcttctggt
    21841 cactgttcca ggcaatgtct ggcatggtgc acaactttac gcagttcgtg ttggtgcgta
    21901 tcggtatggg gattggtgaa gcgccgatga acccatgcgg tgtaaaagtc attaacgac
//
LOCUS       DAJVUP010000062        21240 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.062, whole genome shotgun sequence.
ACCESSION   DAJVUP010000062 DAJVUP010000000
VERSION     DAJVUP010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 21240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21240
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.062"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(138..566)
                     /gene="mxiM"
                     /locus_tag="OQQ75_002103"
     CDS             complement(138..566)
                     /gene="mxiM"
                     /locus_tag="OQQ75_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system pilotin MxiM"
                     /protein_id="HCS1976431.1"
                     /translation="MIRHGSNKLKIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
                     YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
                     AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
     gene            complement(550..957)
                     /gene="mxiM"
                     /locus_tag="OQQ75_002104"
     CDS             complement(550..957)
                     /gene="mxiM"
                     /locus_tag="OQQ75_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiM"
                     /protein_id="HCS1976432.1"
                     /translation="MINQINASNALQQRLNSEEFVNLNERLSSSQSFDENIIYEIMQY
                     FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
                     SIYNNIDFYIKTTTFDSLISVFDAGREADDSTW"
     gene            complement(950..1645)
                     /gene="mxiN"
                     /locus_tag="OQQ75_002105"
     CDS             complement(950..1645)
                     /gene="mxiN"
                     /locus_tag="OQQ75_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa type III secretion system linker protein
                     MxiN"
                     /protein_id="HCS1976433.1"
                     /translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
                     KAICVIKDATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
                     TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
                     KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHKKLRQ
                     IAEDLLKENPVND"
     gene            complement(1587..2114)
                     /locus_tag="OQQ75_002106"
     CDS             complement(1587..2114)
                     /locus_tag="OQQ75_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion apparatus protein OrgA/MxiK"
                     /protein_id="HCS1976434.1"
                     /translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
                     NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
                     ISKQGEAAIRSGFWHLIEWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
                     QYAKRHFTGIQTSCL"
     gene            complement(2111..2836)
                     /gene="mxiJ"
                     /locus_tag="OQQ75_002107"
     CDS             complement(2111..2836)
                     /gene="mxiJ"
                     /locus_tag="OQQ75_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctJ family type III secretion inner membrane
                     ring lipoprotein Mxi"
                     /protein_id="HCS1976435.1"
                     /translation="MIRYKCFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
                     ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
                     KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
                     LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKSEFLTNEVIYVFLG
                     MAVLVVILLVWAFKTGGFKRNKI"
     gene            complement(2842..3135)
                     /gene="mxiI"
                     /locus_tag="OQQ75_002108"
     CDS             complement(2842..3135)
                     /gene="mxiI"
                     /locus_tag="OQQ75_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner rod protein
                     MxiI"
                     /protein_id="HCS1976436.1"
                     /translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
                     VSQIMEMVSHPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
     gene            complement(3148..3399)
                     /locus_tag="OQQ75_002109"
     CDS             complement(3148..3399)
                     /locus_tag="OQQ75_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscF/YscF/HrpA family type III secretion system
                     needle major subunit"
                     /protein_id="HCS1976437.1"
                     /translation="MSVTVPDKDWTLSSLSETFDDGTQTLQGQLTLALNALAENPSNP
                     QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
     gene            complement(3407..4522)
                     /gene="mxiG"
                     /locus_tag="OQQ75_002110"
     CDS             complement(3407..4522)
                     /gene="mxiG"
                     /locus_tag="OQQ75_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiG"
                     /protein_id="HCS1976438.1"
                     /translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
                     EFGNDNFPENIIPVTDSKSDGIIYLAISKDNICQFSDEKGEQIDINSQFNSFEYDGVS
                     FQLKNMMEDKSRVHILNGMYNKPSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
                     RYGIVNTGQCNYILAETQNDAVWASVALNKSGFTKCRYILVSNKEINRIQQYINQRFP
                     YINLYVLNLVSDKAELLVFLSKERNSSKDTELEKLKNALIVEFPYIKNIKFNYLSDHN
                     AREDAKGIFTKVNVQYKEICETNKVTYSVREELTDEKLELINRLISDHKNVYGDQYIE
                     FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
     gene            complement(4531..4989)
                     /gene="ipgF"
                     /locus_tag="OQQ75_002111"
     CDS             complement(4531..4989)
                     /gene="ipgF"
                     /locus_tag="OQQ75_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system lytic transglycosylase
                     IpgF"
                     /protein_id="HCS1976439.1"
                     /translation="MSRFVFIFLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
                     FNKFAVNVNNNGSKDYGIMQINDFHSKRLREMGYTEEMLISHPCLSVHYAAKLLNEFM
                     LMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI"
     gene            complement(4989..5351)
                     /gene="ipgE"
                     /locus_tag="OQQ75_002112"
     CDS             complement(4989..5351)
                     /gene="ipgE"
                     /locus_tag="OQQ75_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgE"
                     /protein_id="HCS1976440.1"
                     /translation="MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLL
                     CPFCALPENINDLIYALSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYY
                     ISRVRWLKDEFARRMKGY"
     gene            complement(5361..6977)
                     /locus_tag="OQQ75_002113"
     CDS             complement(5361..6977)
                     /locus_tag="OQQ75_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector inositol
                     phosphate phosphatase"
                     /protein_id="HCS1976441.1"
                     /translation="MHITNLGLHQVSFQSGDSYKGAEETGNQKGVSVISYQRVKNGER
                     NKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEAIKLAGGDTSKIKAMMEQLDTYK
                     LGEVDKRNINELNKVISEEIRAQLGIKNKKELQSEIKQIFTNYLNNKNWEPINKNINY
                     NGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESKHIANMWLSKVVDDEGKE
                     IFSGIRHGVISAYGLKKNSSERAVAARNKAEELASAALYSRQELLSQALSGKTVDLKI
                     VSTSLLTPTSLTGGEESMLKDQVKALKELNSKRGEPTKLLIRNSDGLLQEVKVNLKVV
                     TFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
                     DVIYLANQIKEILNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQD
                     AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
                     LPLSSLELSYAERIGDPKIWNMVKGYSSFV"
     gene            7291..8775
                     /gene="icsB"
                     /locus_tag="OQQ75_002114"
     CDS             7291..8775
                     /gene="icsB"
                     /locus_tag="OQQ75_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector IcsB"
                     /protein_id="HCS1976442.1"
                     /translation="MILKISNFIDASNTKGPIRVEDTEHGPILVAQKFNLKDLFFRTL
                     STINAKINSQILNEQLKNYRLANQKSLLLFLKTLASEKSAESAFAAYEAVKNSIQHSF
                     TGKDIKLMLNTAESFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
                     TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
                     NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISYNLFGLDE
                     TNMSKFICQKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
                     NNVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
                     TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMSRVLNELKTGATDKKEV
                     IIEKSIKTIDYYNSLKSPDLGTKLYIHDLLQVNKLLLNNSHSNI"
     gene            8788..9177
                     /gene="ipgA"
                     /locus_tag="OQQ75_002115"
     CDS             8788..9177
                     /gene="ipgA"
                     /locus_tag="OQQ75_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgA"
                     /protein_id="HCS1976443.1"
                     /translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
                     FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
                     PDELIESLYEFLFCIKLTIANITSEVN"
     gene            9193..9819
                     /gene="ipgB1"
                     /locus_tag="OQQ75_002116"
     CDS             9193..9819
                     /gene="ipgB1"
                     /locus_tag="OQQ75_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB1"
                     /protein_id="HCS1976444.1"
                     /translation="MQILNKILPQVEFAIPRPSFDSLSHNKLVKKILSVFNLKQRFPQ
                     KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTSYVSSMINRSIDEMAIHNGV
                     VLTSDNKKNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
                     LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
     gene            9877..10344
                     /gene="ipgC"
                     /locus_tag="OQQ75_002117"
     CDS             9877..10344
                     /gene="ipgC"
                     /locus_tag="OQQ75_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SycD/LcrH family type III secretion system
                     chaperone IpgC"
                     /protein_id="HCS1976445.1"
                     /translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
                     DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
                     DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
     gene            10350..12092
                     /gene="ipaB"
                     /locus_tag="OQQ75_002118"
     CDS             10350..12092
                     /gene="ipaB"
                     /locus_tag="OQQ75_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocon subunit
                     IpaB"
                     /protein_id="HCS1976446.1"
                     /translation="MHNVSTTTTGLPLAKILASTELGDNTIQAANDAANKLFSLTIAD
                     LAANKNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
                     TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
                     IQTRLSELAPDSPENKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
                     KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
                     SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
                     ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
                     SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
                     KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGN
                     VASAVFQNNASKNLADLTLSKYQVEQLSKYIGDAIEKFGQLQEVIAELLASMSNSQAN
                     RTDVAKAILQQTTA"
     gene            12112..13203
                     /gene="ipaC"
                     /locus_tag="OQQ75_002119"
     CDS             12112..13203
                     /gene="ipaC"
                     /locus_tag="OQQ75_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS translocon subunit IpaC"
                     /protein_id="HCS1976447.1"
                     /translation="MEIQNTKSAPILYTDISTKQTQSSSETQKSQNYQQLAAHIPLNV
                     GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTITPENTLDISSL
                     SSNAVSLIISVAVLLSALRTAETRLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
                     AVTQVGITGIGAKKTHSGISEQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
                     QTNSSTKILGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRAYELNTLSAQQKQ
                     NIGRATMETSAVAGNISTSGGRYTSALEEEEQLISQASSKQAEEASQVSKEASQATNQ
                     LIQKLLNIIDNINQSRNSTASQIAGNIRA"
     gene            13254..14252
                     /gene="ipaD"
                     /locus_tag="OQQ75_002120"
     CDS             13254..14252
                     /gene="ipaD"
                     /locus_tag="OQQ75_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle tip complex
                     protein IpaD"
                     /protein_id="HCS1976448.1"
                     /translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
                     TMLNDTLHNIRTTNQALKKDLSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSKK
                     EYPINKDARELLHSAPKEAELDGYEMISHRELWDKIAKSINNINEQYLKVYEHAVSSY
                     TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVKSLKDELTKLKEKYKDKPLYPANNTV
                     SKEQANKWLTELGGTIGKVSEKNGGYVVNINMTPIDNMLKSLNNLGGNGEVVLDNAKY
                     QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
     gene            14261..16162
                     /gene="ipaA"
                     /locus_tag="OQQ75_002121"
     CDS             14261..16162
                     /gene="ipaA"
                     /locus_tag="OQQ75_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector invasin IpaA"
                     /protein_id="HCS1976449.1"
                     /translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
                     ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
                     HQNDLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
                     LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
                     DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
                     PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
                     PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHTPDN
                     SDGIGSDLLTTSSQERSTNNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
                     SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
                     LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANTINYVTETNADTIDKNHAI
                     YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
                     KVLKNINKD"
     gene            16166..16402
                     /locus_tag="OQQ75_002122"
     CDS             16166..16402
                     /locus_tag="OQQ75_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1976450.1"
                     /translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
                     ISFEFNLRIDESALEHIITIGDLISVVKNSTKSI"
     gene            16619..17548
                     /gene="virB"
                     /locus_tag="OQQ75_002123"
     CDS             16619..17548
                     /gene="virB"
                     /locus_tag="OQQ75_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence regulon transcriptional activator
                     VirB"
                     /protein_id="HCS1976451.1"
                     /translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
                     VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
                     ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
                     SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
                     EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
                     RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
     gene            complement(18494..19273)
                     /gene="ipaJ"
                     /locus_tag="OQQ75_002124"
     CDS             complement(18494..19273)
                     /gene="ipaJ"
                     /locus_tag="OQQ75_002124"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     protease IpaJ"
                     /protein_id="HCS1976452.1"
                     /translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
                     NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
                     CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
                     FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
                     PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
     gene            20627..>21240
                     /gene="istA"
                     /locus_tag="OQQ75_002125"
     CDS             20627..>21240
                     /gene="istA"
                     /locus_tag="OQQ75_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element IS100 family transposase"
                     /protein_id="HCS1976453.1"
                     /translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
                     YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRF"
BASE COUNT         7218 a         4342 c         3197 g         6483 t
ORIGIN      
        1 ccttccatgc tggagccagc tcaattatgt tacgttcttt atcttttaca agctcaacgt
       61 taactggttt atgtccacta gagtaaatgt aaaacatatt acttgtattt agacctttat
      121 atttactcac aatacaatta tatccctcga attaatttta atttaacttc cccatccttc
      181 tctataagga tggtatcatt tatcttatta ccttttaaaa caaccccgtc tttcagcata
      241 gaaaatagtt tatctatagc tatcttttgt gcatccatga agcacccatc tacttcctta
      301 acattaaagt tgcccatgaa tttacctgca ttaaaactat aaaccgcctt accactaata
      361 catttagagt aaacatttat acttttattg gttgtattaa acgaccataa taaatcattt
      421 ggaatagaaa aataatcctt acttacagga acaatatgcc attctttttc agaattagat
      481 gatgacttta aagcacaccc actcagtgtt aatagcaata tacttaaaat aaatattttc
      541 aacttattac taccatgtcg aatcatctgc ctctctccct gcatcaaaga cactaattaa
      601 tgaatcgaag gttgtagtct taatatagaa atcaatattg ttatatatgg acaatgatgc
      661 ataaaatccc tcatgcaaat cgacatattg atttgcatct atgagtttat taagaagtga
      721 acttttttgt gcagctgtaa gataaggaaa acgtgaattg aataattgtt caatcttatt
      781 gtgcagttca tcattatcta tggaatttaa ttcactctgt gagaaatatt gcattatttc
      841 atagattata ttctcatcaa atgattgcga agatgataat ctctcattta aattaacaaa
      901 ttcttcacta tttaatcttt gctgcagagc attgcttgca tttatttgat taatcattaa
      961 caggattctc ttttaacaag tcttctgcaa tttgtctcag tttcttatgt gctaactctt
     1021 tgaaatattt tttatcattt tttgttaatt tttccgcaag ttctatttta acacctgata
     1081 ttacatcctg aggactaaac tccactactt gattaccact acagaatata taattattcc
     1141 cttcagaata ttttaaaata atcttgacat ctgagcgata tttatggaga tcaagttcta
     1201 actttttcct cagtgctaaa ttacacttgg gcaaaaccac ttttaattct gttactgtat
     1261 tacgcaacga actaagccac tgctccaata aagtgctaat gatcctctca tcatgtaaat
     1321 tttctgaaag caaactagtt atatagtcct caatatttct tctgttttca ttttgcttta
     1381 acttccattc acaaatatag tcaataatat gctcaaaagc agtctgtata ccaatttgat
     1441 aaccatcgca tacagcatct atacgcagtg attcagcttt tttcgtagca tcctttataa
     1501 cacaaattgc tttcttctta ctctcagtgt ctctatcttt tatggtttta cataattcct
     1561 tttcaattct ctttataaca acaccatcat aggcatgatg tctggatacc ggtaaagtgc
     1621 ctttttgcat attgcatacc ttcatttaat cgggacaaat ttctttctac aggcgtataa
     1681 tttccctcca aagcaattgg attaaataat aagtttattc tttcatatat accaacagat
     1741 atattttcct tccactcaat aagatgccaa aaaccacttc gaatagcggc ctccccttgc
     1801 ttactgattt tgcccccata ataactaata accatctcac tatgattaat taaccgagac
     1861 tcttgactac cgataaaata agcaacagct ggaagtaaat tccagttggc aacaaacata
     1921 gcggttaccc cgcttaaagg ttcaatatcg caatttagat catatttgtt aattatgaga
     1981 ttattaatct cacttctgat tacgccattt tctaacagtt cagaaggcaa attcaaccga
     2041 tttctattta tatagaacgc tggatcaaaa attattgaaa gatatttttt ataaattcca
     2101 tccattctta tcatattttg tttctcttga acccccctgt tttgaatgcc cataccaaaa
     2161 gaatgacaac tagtacagcc atcccgagaa atacatatat tacttcattt gttaaaaatt
     2221 ccgatttaat ttccttaaca ggttgtacat ttgtataaac atattcttct ttcggagtta
     2281 atatgacaga tatattttca tacttaacat cagaaaaggt gtttttcaaa aatcgcttaa
     2341 tattactaac taatagttca gactctttcg gtgagtcata tatagcgatt actgatatat
     2401 gcatcggttt tgaagatata tttttttctt caagatcata gctaacatgt atttttgccg
     2461 aaataacacc accaatagaa actaaagact gttccagccg ttgctcaata gcactatata
     2521 aacgggcctt ttcagctctt ggagaagaca ctaatgaatc tgtaggaaac atttgtgaga
     2581 tatcaactct ctccggattt ggcaaatcgt acatgcgcat caaatcaact gccgatgcaa
     2641 atgtcccctt ttcgacttgt accgagatcc cctgtttacc tccatcaact tttctagcag
     2701 taatattatg gcgttctagc acagatatta tttcatttgc ctgtctttga gataaattag
     2761 aaattaactc ttcacgttgc tcacatccaa tcaacatcag caacaagaat aaaataaaac
     2821 atttatacct aatcatataa attaagactt taataaagtt tcaacagccg aaactgtttt
     2881 tcttgctaac gtgccagcta atgatactcc tattgaataa tttgagagcg tcgtctgtaa
     2941 cttggccaaa gattctgggt ttaatgattc tggatggctt accatctcca ttatttgtga
     3001 tacttgaata tctgtatcca tcttaatatc actatattta gccgacacga cgtcttccag
     3061 gcttgatatc tcttgagatt gaaaatcact ggctttgata atatcaacct gattgactgg
     3121 ataaatgtaa ttcatgaatg ctccctatta tctgaagttt tgaataattg cagcatcaac
     3181 atccttaatc actttcacag tattagattg cgcgttccta tataatgtat attcagataa
     3241 tttactttgg tattcagcca gcaactgtgg attcgaagga ttttcagcta atgcatttag
     3301 tgccaatgtt agttgccctt gtaatgtttg agttccatca tcaaaagttt cagataatga
     3361 actcagagtc caatctttat ccggtactgt aacactcatt ttatcctcac ttatttttat
     3421 ctaaaaaaaa ccagtgttta tcattcaaca ttacataact gtctttgctg ttaagatatg
     3481 atttaccttt aaaatcatca tctatcaaaa gtacagaaaa ctcaatatac tgatctccat
     3541 atacattttt atgatcagaa atcagtctat taatgagctc aagcttttca tctgtcagtt
     3601 cttctctgac agaatatgta actttattag tttcacaaat ctctttatac tggacattta
     3661 cctttgtgaa aataccttta gcatcctccc ttgcattatg atcgctaaga tagttgaatt
     3721 taatattttt gatatacgga aattcaacta tcagagcatt tttcaatttc tcaagttcgg
     3781 tatcttttga actatttctt tctttactta aaaataccag taattccgct ttatcactca
     3841 ctaaattcaa cacatacaaa ttgatatatg ggaatcgttg attgatatat tgttgaattc
     3901 tatttatttc tttgttggac accagaatat atctgcattt ggtaaatccg cttttattta
     3961 aggctacaga tgcccatacc gcatcatttt gtgtttcggc aagaatataa ttgcactgtc
     4021 ctgtgttgac tattccatat ctcttatcat ctataatttc agcaatttct tttacttcat
     4081 ctttctttaa agagagggaa aaaattataa ttaacacaac aataacagca aagaaaaaaa
     4141 acaccgaggg tttattatac attccgttta gtatatgaac tctcgattta tcctccatca
     4201 tatttttaag ttgaaaagaa actccgtcat attcaaatga gttaaattgt gaattgatat
     4261 caatttgttc acctttttca tcactaaatt gacagatatt atctttactt atggccaaat
     4321 aaattatacc atccgattta ctatctgtta ctggaataat attttctggg aaattatcgt
     4381 ttccaaactc aagtgtttct atcgtccgtc cgagaacaat taagttattc ccataatata
     4441 acggaaactc atccccgaca ccgtttgtga gtttcactaa taacctgaat ggtgcaagat
     4501 ttgagttctt tgcctcagac ataaatcctc ttatatcctt cgattattct gcttgctctc
     4561 tgctgctatc cgcaaatagc gtttatagat atcctctgcg tactttaatc tttctttttt
     4621 ctttttcgga gatgttcctg cattataggc accaacagcc tcccaccctc ttccatacat
     4681 cagcataaac tcatttaata actttgctgc ataatgtaca gaaagacatg gatgactaat
     4741 tagcatttcc tcagtatatc ccatttctct aagtctttta gaatgaaagt catttatttg
     4801 cattatacca taatctttac ttccattgtt attaacattg actgcaaatt tattaaatcc
     4861 ggattctttt tccgcaatcg cttttaacaa actcgatgga atgttgtacc tttcaccagc
     4921 cttatcccaa caatcagctc tccctaaata tgggataaaa cacagaaaaa taaatacgaa
     4981 acgggacatt aatacccctt cattcttcgc gcaaattcat ccttcagcca acgcacacgc
     5041 gaaatataat attctgtatt aacatatata tcctcgaatt catttatccc ggtaagatct
     5101 aatcgcgcaa ttagacttcc accttcatca tcagtagcta aacatatctt ttctgagtaa
     5161 tttaggctca acgcatatat aagatcattt atattttcag gcaatgcaca aaaagggcat
     5221 aataaattta ttgaatctcc ttctttttca atatatatta acacatcatc atcaagcatg
     5281 attgcttgat catcggtatc aattgaaggg atacccaagg ctcggcaaat aacatctgct
     5341 aaatcttcca tatattcctc ttatacaaat gacgaatacc ctttcaccat attccatatt
     5401 ttggggtccc ctattctttc agcataagac agctctaacg aagatagcgg taattttttc
     5461 ataactttat ttccaggcac accagtattc atctcttgga tttccatatt accactattc
     5521 attagaatag tagaaaataa tcttttctct tctgaggata atttactatt taattgagaa
     5581 aactgccctg tttcatgttt tcttattatt tctcttttaa tttcagcatc ctgcatacct
     5641 gttctgtcct tcccactctt acaattccag caaggtacag cacctatagt ataagccaat
     5701 agagccattc tttgtgacaa tttatacggc tctccattat catttttttg taacttcttg
     5761 tttagaatct cttttatctg gttagccaga tatatcacat cattcttaca tggtggattt
     5821 ttttctatag cttctgcagc ccaacctcca atcacaccat ttttgaggaa attatccccc
     5881 aacaaagaac atattgattc accattaagc ttgtcaacat tcctccagcc taagcccatt
     5941 tttagcgcta attcatttac accaaagtta aatgtcacca cttttagatt aacctttact
     6001 tcttgcagaa gaccatcact attccgaatt aataatttcg ttggttcccc ccttttagag
     6061 tttaactctt ttaatgcctt tacctgatct tttaacatac tctcctctcc cccagttaaa
     6121 ctggtcggcg tcagaagaga agtcgaaaca atctttaaat ctactgtttt accagacaaa
     6181 gcctgtgata ataattcttg tctgctatat aatgctgcgc ttgctaactc ctcagcttta
     6241 ttacgagctg caacagctct ttcagatgag ttttttttca atccataggc tgatataact
     6301 ccatgtctga tacccgaaaa aatttccttc ccctcgtcat ccaccacttt tgaaagccac
     6361 atattcgcaa tatgcttact ctctctcgta gaagcacaac aaattccttt tccattatac
     6421 tctttgacaa atatattttt attccctatc ttcatatgag aggcgggtgt taattgaaaa
     6481 ccataatttt tcccattata attaatattt ttgttgatcg gttcccaatt cttattattt
     6541 aaataattag taaatatttg ttttatttcc gattgcaatt cctttttatt tttaatgcct
     6601 agctgtgctc ttatctcttc acttattact ttattaagct cattaatatt tcttttatca
     6661 acttcaccaa gtttataggt atctaattgt tccatcatgg ctttaatttt tgacgtatca
     6721 ccacctgcca actttattgc ctcgtaaaaa actgcagctc tgtcacgcgc aaacaaaagg
     6781 cctttccctg ttaagcttgt ttggttctgt aaatataatc gattaagcgc ttcgaccccc
     6841 ttatttctct ctccattttt aactctttga tatgaaatca cgcttacacc tttttggttt
     6901 ccggtttctt ctgcgccttt ataggaatct ccgctttgaa atgaaacctg atgcaatccc
     6961 aaattagtta tgtgcattta attatcctca gtcataaatg gggcattgat tgcagttttg
     7021 tacctcgttt tacaacaaaa aagatactta ttcaacaggg ttctctcttt ttctataaca
     7081 ctccgagcct gatatatcag acactttaac ttgtgggatt tcatgatgaa accagcacta
     7141 catatgctca cgaggtacat attatgtaca gcaaaagaaa atttgattat gttaacaggc
     7201 tcaagtttct aaatttatta attgaatata ttatatatca aatacatttt acatccccac
     7261 aatcaccacg taatggagag ttaataaagt atgattctca aaattagcaa tttcattgac
     7321 gcaagcaata caaaagggcc tatacgcgtt gaagatacag agcatggacc tatattggta
     7381 gcacagaaat tcaacctaaa ggatctcttt ttcagaacat taagcactat taatgcaaag
     7441 ataaattcac agatattaaa tgaacaacta aaaaattatc gactagcgaa tcaaaaatcc
     7501 ttattgcttt tcctcaagac attagctagc gaaaaatctg cagaaagtgc gtttgccgcc
     7561 tatgaagcag tcaaaaattc aattcaacat tcttttacag gtaaagacat caaattaatg
     7621 ttgaataccg cagagagttt tcatggcatc ggtacagcca aaaatcttga aagacattta
     7681 gtgtttcgtt gctggggaaa tagaggcata acccatttag ggcataccag tatcagtata
     7741 aaaaacaatt tactacagga accaactcat acctatctca gctggtatcc cggcgggaat
     7801 gttacaaaag atacagaaat aaactacctt tttgaaaaac gctcaggtta cagtgtcgat
     7861 acctataaac aagacaaact aaatatgatt tcagaccaaa cagccgaaag acttgatgca
     7921 ggccaagagg ttagaaactt attaaattca aaacaagatc aaaataacaa caaaaaaata
     7981 ttttttccca gagctaatca aaaaaaagac ccctatggtt attggggggt cagtgctgat
     8041 aaagtataca ttccattatc aggtgataat aaaacaaagg atggtaaaat cagctataac
     8101 ctttttggcc ttgatgaaac aaacatgtca aaatttatat gccaaaagaa agcagatgct
     8161 ttcagacaat tggcaaatta taaattaatc agtaaatctg aaaactgtgc tggtatggca
     8221 cttaatgttc ttaaagcagg aaattctgaa atatactttc cactccctga cgttaaattg
     8281 gttgctacac ctaacaatgt atacgcgtat gcaaataaag ttaggcaacg cattgaaagt
     8341 ctcaatcagt cttataacga gataatgaag tatattgaat ctgattttga tctttccaga
     8401 ttgactcaat tacgacgtag ctatcttaaa agtttcaata aaattaacct tatccacacc
     8461 ccaaaaacat tcaagccttt atcaatttca ctttacaaac atcctactga aaatgtatct
     8521 tcagaagact ttgatgcggt catcaacgct tgccactcat acttagtaaa atcagcaccc
     8581 agcaatatgt ctcgtgtatt aaacgaatta aaaaccggag caacagataa aaaagaagta
     8641 attatcgaaa agtcaataaa aactattgat tattacaatt ctcttaaatc gccagatctt
     8701 ggaaccaaac tttacattca cgacttatta caggtcaata agcttttatt gaataactct
     8761 cattctaata tatagaaggc catagaaatg tgtcgcaaac tatatgataa actttatgaa
     8821 ataacaggtg caaagcttga ttttaacgat aaaaatcaag cctttatatt gctcgaagaa
     8881 caaatacctg tttgtataac agataatgat gaatacatct ttttgaccgg acttcttaat
     8941 gaacatgaac tttttacaga aaatattatt aatccagaac acatactcat ccttaactac
     9001 tctttgagta gagattatgg ttcttctatc tgtcttctcc ctgatactca tcaatgtgtt
     9061 ttgaccaaga aacactacaa aaaatatctt tcacctgatg aactcattga atctttgtac
     9121 gaatttttat tttgtattaa actaaccatt gcaaacatca cttcagaagt gaactaacat
     9181 atagggggta tcatgcaaat tctaaacaaa atacttccac aggttgaatt cgcgattcct
     9241 cgcccatcat ttgattcgtt aagtcacaat aagcttgtaa agaaaatatt atctgttttt
     9301 aacttaaaac aacgctttcc tcagaagaat tttggatgcc cggtgaatat aaataaaatc
     9361 agggacagcg tcatagacaa aataaaagat agtaattcgg ggaatcaact attttgttgg
     9421 atgagccaag agcgaacctc ttatgtctct tcaatgataa acagaagtat agatgaaatg
     9481 gccatacaca atggagttgt tttgacctca gataacaaaa aaaacatatt tgcagctatt
     9541 gaaaaaaaat tcccggatat aaaacttgat gaaaaatcag cacaaacatc tatcagtcat
     9601 acagcactaa acgagattgc ctcatctggc ctcagagcaa agattttaaa acgttatagc
     9661 agtgacatgg atttgtttaa cacacaaatg aaggatctta caaatctagt atccagttcc
     9721 gtctacgata aaatatttaa tgaatcaaca aaagttttac aaatagaaat aagcgcagag
     9781 gttctaaagg ctgtataccg tcaaagcaat acaaattaaa tctgtttata ttaaatctta
     9841 tacttattaa agtaatgcag acaaaaagga gaccttatgt ctttaaatat cactgaaaat
     9901 gaaagcatct ctactgcagt aattgatgca attaactctg gcgctacact gaaagatatt
     9961 aatgcaattc ctgatgatat gatggatgac atttattcat atgcttatga cttttacaac
    10021 aaaggaagaa tagaggaagc tgaagttttc ttcagatttt tatgtatata cgacttttac
    10081 aatgtagact acattatggg actcgcagct atttatcaga taaaagaaca gttccaacaa
    10141 gcagcagacc tttatgctgt cgcttttgca ttaggaaaaa atgactatac accggtattc
    10201 catactggac aatgccagct tcggttgaaa gcccccttga aagccaaaga gtgcttcgaa
    10261 ctcgtaattc aacacagcaa tgatgaaaaa ttaaaaataa aagcacaatc atacttagac
    10321 gcaattcagg atatcaagga gtaattatta tgcataatgt aagcaccaca accactggtt
    10381 tgcctcttgc caaaatattg gcttccactg agcttggaga caatactatc caggctgcaa
    10441 atgatgcagc taacaaatta ttttctctta caattgctga tcttgctgct aacaaaaata
    10501 ttaatacaac taatgcacac tcaacttcga atatattaat ccctgaactt aaagcaccaa
    10561 agtcattaaa tgcaagttcc caactaacgc ttttaattgg aaaccttatt caaatacttg
    10621 gtgaaaaatc tttaactgca ttaacaaata aaattactgc ctggaagtcc caacaacagg
    10681 caagacagca aaaaaaccta gaattctccg ataaaattaa tactcttcta tctgaaactg
    10741 aaggactaac cagagactat gaaaaacaaa ttaataaact aaaaaacgca gattctaaaa
    10801 taaaagacct agaaaataaa attaaccaaa ttcaaacaag attatccgaa ctcgccccag
    10861 attcaccaga aaataaaaaa ttaagacggg aagaaataca actcactatc aaaaaagacg
    10921 cagcagttaa agacaggaca ttgattgagc agaaaactct gtcaattcat agcaaactta
    10981 cagataaatc aatgcaactc gaaaaagaaa tagactcttt ttctgcattt tcaaacacag
    11041 catctgctga acagctatca acccagcaga aatcattaac cggacttgcc agtgttactc
    11101 aattgatggc aacctttatt caactagttg gaaaaaataa tgaagaatct ttaaaaaatg
    11161 atctggctct attccagtct ctccaagaat caagaaaaac tgaaatggag agaaaatctg
    11221 atgagtatgc tgctgaagta cgtaaagcag aagaactcaa cagagtaatg ggttgtgttg
    11281 ggaaaatact tggggcactt ttaactatcg ttagtgttgt tgcagcagct ttttctggag
    11341 gagcatctct agcactggca gctgttggtt tagctcttat ggttacggat gctatagtac
    11401 aagcagcgac cggcaattcc ttcatggaac aagccctgaa tccgatcatg aaagcagtca
    11461 ttgaaccctt aatcaaactc ctttcagatg catttacaaa aatgctcgaa ggcttgggcg
    11521 tcgactcgaa aaaagccaaa atgattggct ctattctggg ggcaatcgca ggcgctcttg
    11581 tcttggttgc agcagtcgtt ctcgtagcca ctgttggtaa acaggcagca gcaaaacttg
    11641 cagagaatat tggcaaaata ataggtaaaa ccctcacaga ccttatacca aagtttctca
    11701 agaatttttc ttctcaactg gacgatttaa tcactaatgc agttgccaga ttaaataaat
    11761 ttcttggtgc agcgggtgat gaagtaatat ccaaacaaat tatttccacc catttaaacc
    11821 aagcagtttt attaggagaa agtgttaact ctgccacaca agcgggagga aatgtcgctt
    11881 ctgctgtttt ccaaaacaac gcgtcgaaaa atctagcaga cctgacatta tcgaaatatc
    11941 aagttgaaca actgtcaaaa tacatcggtg acgcaataga aaaattcggc caattgcagg
    12001 aagtaattgc agagctgtta gcctcaatgt ccaactctca ggctaataga actgatgttg
    12061 caaaagcaat tttgcaacaa actactgctt gatacaaata aggagaatgt tatggaaatt
    12121 caaaacacaa aatcagcccc gattttatat acagatatat ctacaaaaca aactcaaagt
    12181 tcttccgaaa cacaaaaatc acaaaattat cagcagttag cagcacatat tccacttaat
    12241 gtcggtaaaa atcccgtatt aacaactaca ttaaatgatg atcaactttt aaagttatca
    12301 gagcaggttc agcatgattc agaaatcatt gctcgcctta ctgacaaaaa gatgaaagat
    12361 ctttcagaaa tgagtcacac aattacccca gagaacaccc tggatatttc cagtctttct
    12421 tctaatgctg tttctttaat tattagtgta gccgttctac tttctgctct ccgcactgca
    12481 gaaactagat tgggctctca attgtcattg attgcgttcg atgctacaaa atcagctgca
    12541 gagaacattg ttcggcaagg cctagcagcc ctatcatcaa gcattactgg agcggtcaca
    12601 caagtaggta taacgggtat cggtgccaaa aaaacgcatt cagggattag cgaacaaaaa
    12661 ggagccttaa gaaagaacct tgccactgct caatctcttg aaaaagagct tgcaggttct
    12721 aaattagggt taaataaaca aatagataca aatatcacct caccacaaac taactctagc
    12781 acaaaaattt taggtaaaaa taaactggca ccagataata tatccctgtc aactgaacat
    12841 aaaacttctc ttagttctcc cgatatttct ttgcaggata aaattgacac ccagagaaga
    12901 gcttacgagc tcaataccct ttctgctcag caaaaacaaa acattggccg tgcaacaatg
    12961 gagacatcag ccgttgctgg taatatatcc acatcaggag ggcgttatac atctgctctt
    13021 gaagaagaag aacaactaat cagtcaggcc agcagtaaac aagcagagga agcatcccaa
    13081 gtatctaaag aagcatccca agcgacaaat caattaatac aaaaattatt gaatataatt
    13141 gacaacatca accaatcaag gaattctaca gccagtcaga ttgctggtaa cattcgagct
    13201 taatatatcc aagagccata ataatatatg gctcttccta taaggaaata accatgaata
    13261 taacaactct gactaatagt atttccacct catcattcag cccaaacaat accaacggtt
    13321 catcaaccga aacagttaat tctgatataa aaacaacgac cagttctcat cctgtaagtt
    13381 cccttactat gctcaacgac acccttcata atatcagaac aacaaatcag gcattaaaga
    13441 aagatctctc acaaaaaacg ttgactaaaa catcgctaga agaaatagca ttacattcat
    13501 ctcagattag catggatgta aacaaatccg ctcaactatt ggatattctt tccaagaaag
    13561 aatatccaat taataaagac gcaagagaat tattacattc agccccgaaa gaagccgagc
    13621 ttgatggata tgaaatgata tctcacagag aactgtggga taaaattgca aagtcaatca
    13681 ataatattaa tgaacagtat ctgaaagtat atgaacatgc cgttagttca tatactcaaa
    13741 tgtatcaaga ttttagcgct gttctttcca gtcttgccgg ctggatctct cccggaggta
    13801 acgacggaaa ctccgtgaaa ttacaagtca aatcgcttaa agacgaattg acaaagctca
    13861 aggaaaaata taaagataaa ccgctatatc cagcaaataa tactgttagt aaggaacaag
    13921 caaataaatg gcttacagaa ttaggtggaa caatcggcaa ggtatctgaa aaaaacgggg
    13981 gatatgttgt caatataaac atgaccccaa tagacaatat gttaaaaagc ttaaataatc
    14041 taggtggaaa tggcgaggtt gtgctagata atgcaaaata tcaggcatgg aatgccggat
    14101 tctctgccga agatgaaaca atgaaaaata atcttcaaac tttagttcaa aaatacagta
    14161 atgccaatag tatttttgat aatttagtaa aggttttgag tagtacaata agctcatgta
    14221 cagatacaga taaacttttt ctccatttct gaggtgcgcc atgcataatg taaataatac
    14281 tcaagcgcca acattcttat ataaggcaac ttcaccatca tcaacagaat acagcgagtt
    14341 aaaaagcaaa atatccgata tccatagttc gcaaacttct ctaaaaacac cagcatcagt
    14401 gtctgaaaaa gaaaactttg caacgtcttt taatcagaaa tgtcttgatt ttttattttc
    14461 ttcctcaggg aaagaagatg tgttaagaag catttattcc aactcaatga atgcgtatgc
    14521 caaaagcgag attctcgaat tttcaaatgt tttgtactcc ttagtacatc aaaatgatct
    14581 taattttgaa aacgaaaagg gacttcaaaa aattgtcgca cagtattcgg aactaattat
    14641 aaaagataaa ttatcccaag attctgcctt tggaccatgg tcggcaaaga ataagaaact
    14701 ccatcaatta cgacaaaaca ttgagcacag acttgcacta ttagcacaac aacacacatc
    14761 tggtgaagct ttatcattgg gacaaaaact cctcaatact gaagtatcat catttatcaa
    14821 gaataatatt cttgctgaat taaagttaag taatgaaact gtttcatctc tcaaactaga
    14881 tgatttagtt gacgcacagg caaaacttgc ctttgatagt ttgcgcaatc aacgtaaaaa
    14941 tactattgat agtaaaggat ttggtatagg taaactgtca agagacttaa atacagtagc
    15001 cgtgtttcct gagctgttga gaaaagtcct taatgatatt ttagaagata taaaagattc
    15061 gcatcctatc caagatggcc tccctacacc tcccgaagat atgccagatg gcggaccaac
    15121 ccccggagcc aatgagaaaa catcccaacc tgtaattcac tatcatataa ataatgataa
    15181 tagaacttac gataatagag tttttgacaa cagagtatat gacaatagct atcacgagaa
    15241 cccagaaaat gatgcacagt ctcctacttc tcagacaaac gatctattat cccgtaacgg
    15301 aaactcatta ctaaatccac aaagagcact agttcaaaaa gtaacttccg ttctaccaca
    15361 ctctatatca gatactgtcc agacatttgc aaataattca gctttagaaa aggttttcaa
    15421 ccatactcca gataattcgg atggaatagg ttcagacctg ttaactacga gtagtcaaga
    15481 aagatctaca aataactctc tttctcgggg acacaggcct ctgaacatac agaactcttc
    15541 aaccaccccc cctctccacc cggaaggagt gacaagcagt aatgataact catcagatac
    15601 aactaaaagt agcgcttctc tttctcatag agtagcttcg caaatcaata aattcaactc
    15661 aaacactgat tcaaaagtac ttcagactga ttttttatca agaaatggag acacatattt
    15721 aacacgggaa acgatatttg aagcttcaaa aaaagtaaca aactccctaa gtaatcttat
    15781 atctctcatt ggaactaaat caggaacaca agaacgagag ttacaggaaa aatcaaagga
    15841 cattacaaaa tccacaacag aacacagaat aaacaacaaa ttaaaagtta cagatgcaaa
    15901 tacaataaac tacgtaacag aaaccaacgc agatacaatt gataaaaatc atgcgatcta
    15961 tgaaaaggca aaagaagtat ctagcgccct cagcaaggta ttgtcaaaaa ttgacgatac
    16021 ctctgcagaa ttacttacag atgatatatc tgatttaaaa aataacaatg atattacagc
    16081 tgaaaacaat aatatatata aagcagcaaa agatgtaacc acttccctat caaaagtatt
    16141 aaagaatatc aataaggatt aaaatatgat aaaagaaaaa atattatcaa tagtggcctt
    16201 ttgctatggt atagcgtaca gcaaactatc tgaagaaact aaatttattg aagatctttc
    16261 tgccgattct ctttctctga ttgaaatgct ggatatgatt agttttgagt tcaatctacg
    16321 tatagatgaa tctgcattag aacacattat tactattgga gatcttattt ctgtagtcaa
    16381 aaatagtaca aaatcaatat agtaattgat aagcattttt tcatctatgg agctctcaca
    16441 tcagagctcc acaagaatat tattctttta tccaataaag ataaattgca tcaatccagc
    16501 tattaaaata gtaattttta agactaccgt tgactatcat caacagttac atacaatctt
    16561 gctcacactg catttaactt ttgtcaatat aaatcaatat gaataaacag ggtgtgatat
    16621 ggtggatttg tgcaacgact tgttaagtat aaaggaaggc caaaagaaag agtttacact
    16681 ccattctggt aataaagttt cctttatcaa agccaagatt cctcataaaa ggatccaaga
    16741 tttaaccttc gtcaaccaaa aaacgaatgt acgcgatcaa gaatccctaa cagaagaatc
    16801 attagccgat atcataaaaa ctataaagct acaacaattc ttccctgtaa taggaaggga
    16861 gattgatggt agaattgaaa ttctggatgg cactcgtaga agagcatctg caatatatgc
    16921 aggagcagat cttgaagttc tatattcaaa agaatatata tctactcttg atgccagaaa
    16981 actagcaaac gatatacaaa cagcaaaaga gcatagcatc cgagaacttg gtattggtct
    17041 taattttctg aaagtatcag ggatgtccta taaagacata gccaaaaaag agaatctgtc
    17101 tcgcgcgaaa gtcactcgtg cctttcaggc agcaagcgtt ccacaggaaa taatatctct
    17161 atttccaatc gcgtcagaac ttaactttaa tgactacaag atattattca attattataa
    17221 aggacttgaa aaggctaatg aatctcttag ttctacacta ccaatattaa aggaagaaat
    17281 aaaagacctt gatacaaatt tgcccccgga catatataaa aaagaaattt taaacatcat
    17341 aaagaaaagc aaaaacagaa agcaaaaccc ttcgctaaaa gttgactcgt tatttatttc
    17401 taaagacaaa cggacttaca taaaaagaaa agagaataaa acaaacagaa ctctaatatt
    17461 tacattatct aaaataaaca aaacagttca gagagaaata gatgaagcta ttcgagatat
    17521 aatttctcgc catctatcgt cttcataaac atcgaacact gatgtaaact gcccaattca
    17581 gataataaaa atcttcgttg aacttgactt tcagccggtg gggtaattcc gtcggctatc
    17641 tgttattcaa tccccacgca ctgtgtttcc ttaaaattac ggtgaaaact cataccctgc
    17701 tgaccacgag aacattatct ggtgaaatta gtaatattca tatcattgaa aatgaattgt
    17761 gcaactaagg gatgcggcat gatggtcaaa attttatgtg aagatgagtg actggccgaa
    17821 aatattcagc gtatttttaa tcgtttcaat aaaaacagcg aggattagca gtcaacgctt
    17881 ttactactca atttttttac atggtgataa acaaaaaatc caccattaac agacttcgtt
    17941 cacagtatca aaaaagcttt aagaatatat tagcagattt ctcaaatata attactgttt
    18001 tattctccta atcttcccat aaaatgaccg acttacatta ttttataatt ataaacaagt
    18061 ttgattttaa aatcatatta attattaaca agagatttat ttttctaacc ccaaaagtta
    18121 tgcttagtca aagagtaact tataatatcc atacccctca tagggcttac aatttaaatt
    18181 gcgggtataa aatacatcta ttttcaaata aaataaagca tactccaatt acaacgagtg
    18241 attaaaataa aaatatcatc caagtcaatc actgtttgct ctgcaaaata tgtcagcctt
    18301 ctcaaactta ccagcactta aatatttaag cacacaatca ttccttgagg gagttcactt
    18361 atttcaagag aaacatttca tcttcccaca caactaatcc gcccaatata gctaaatttg
    18421 tactcagtaa tatcatttgt tatgcccccc gccccaaaat attcaagctc cttcacagat
    18481 aaaaaacgac aatttacaaa gcctcattag ttataactat ggaaatacct attttagtat
    18541 atcctataaa gttagaatta cttcttcttg cacctaattc catagttgaa aaacaagaat
    18601 aattttctcc tacagctgga tccatatagc ttccatcagg tctacacaac acccagtgga
    18661 ggccgacagg aactccaata aaggatacag caacagcttc caaaactctt tggttagaag
    18721 ataacacatc tcgttgatgt actatattac atcccatgcc aattaataag tcccttgcat
    18781 cgggataaat aaaactaatt acttgcgaaa aaatgttact ttcttcaacg acataagcat
    18841 tcaatccaag aagcctcgta gccatgacta tcttatcagg catagaataa ccggcatccg
    18901 cgatattatc tttgtgtatt ctcggattat aattaccact agttattaag tataaatccc
    18961 gctcacaacg attatccaaa tcaagagaac tcttccttgt catttcggac atagaccctt
    19021 tgtattgtgg tattttatca acccctaatt cctttgcagc acagagtaaa ctggcagctc
    19081 cacaagaatt gtcatacatc tgcttcctcg ccaaaaaaca accttgttcg tttactctat
    19141 tctcatttac cctcacatca gtctgatgag atatcatata ttctcttggt atagccccct
    19201 gcaataaaac cccatataac ataacacctg tatgaataca tccccgtttg caaggcttcc
    19261 gttgttccga catcgacgag taattgcagc acagtattgc atccagcaat gcgaactact
    19321 atgagaatta gctgaccggg tccttattcc ccgaacgaac tttaaatcca aaacctcata
    19381 ctcttttccg tcgtcatcac gtccgtcacc ataacaacct ttcagcatcc acccttttat
    19441 taagagttaa tgtccatcag catcagcaat taataccgcc tgatactgac atatttttgt
    19501 cgtatttacg tccataatcg gttattgtga tacaggtcac accagcttat ttgctattgt
    19561 tacaataacc accttggttg agagctgttt tttcaacttt gttatcaact cccccaactc
    19621 cttggtcagt aaggctgccg accgagcaca gtgaatagat agtatccgca ggtaccacca
    19681 tgattactta atactcagaa ggcgaagtgc tctccaatta actctgccgc actatgctta
    19741 taagctgctt ttcaatgccg tctatcaaca tgtccagttc attcaatctg ttgtactggt
    19801 aatccaacgc agtaatgata tatgcaggta ttctttcatc cactccagta acgtttcatg
    19861 caaagcatta atttacgcgc tacggaactt caccagttga ctgagcaaac aatgtgggac
    19921 cagtactgcc tgcagttctt ctattgttac agcgatttct ttaccaaaca gctgaaccac
    19981 catcaagata aagatagcct gaacattcat cgcaccattt tgttaccaat ggcaaaagat
    20041 ttaacgaacc gtgcctgcat caggcggact ttttatccct gctttgttag ctccctaacc
    20101 ttgtacagag agcctccata agctcccata tcaagcagac atggttctgc agttactgac
    20161 atacaccaga aaactctgac agcagactca cttatcctcc acttcactca tatccttatt
    20221 ggtgagatga acctgaatga catgttttgc gacataaacg ccaaccagtg tatatttcac
    20281 ctgtagagat tctacaatct gtagcgttat gcatctaatg ttaggctcta tgatgtcaga
    20341 aatctgcgag actctacacc ttctgcattt acctttattt atcaccatgc tcctcagtta
    20401 acggagaacg tgttcattgc attttgtcac ttacatttcg cctttggtat cggggggata
    20461 taggttccaa cgttccgcat gagaacctga accggcttca cgccaccttg ataccagatg
    20521 ccgcacaggc agtcaacaag tgtcacgaac ggtgcaatag tgatccacac ccaacgcctg
    20581 aaatcagatc cagggggtaa tctgctctcc tgattcagga gagcttatgg tcacttttga
    20641 gacagttatg gaaattaaaa tcctgcacaa gcagggaatg agtagccggg cgattgccag
    20701 agaactgggg ctctcccgca ataccgttaa acgttatttg caggcaaaat ctgagccgcc
    20761 aaaatatacg ccgcgacctg ctgttgcttc actcctggat gaataccggg attatattcg
    20821 tcaacgcatc gccgatgctc atccttacaa aatcccggca acggtaatcg ctcgcgagat
    20881 cagagaccag ggatatcgtg gcggaatgac cattctcagg gcattcattc gttctctctc
    20941 ggttcctcag gagcaggagc ctgccgttcg gttcgaaact gaacccggac gacagatgca
    21001 ggttgactgg ggcactatgc gtaatggtcg ctcaccgctt cacgtgttcg ttgctgttcc
    21061 cggatacagc cgaatgttgt acatcgaatt cactgacaat atgcgttatg acacgctgga
    21121 gacctgccat cgtaatgcgt tccgcttctt tggtggtgtg ccgcgcgaag tgttgtatga
    21181 caatatgaaa actgtggttc tgcaacgtga cgcatatcag accggtcagc accggttcca
//
LOCUS       DAJVUP010000063        20907 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.063, whole genome shotgun sequence.
ACCESSION   DAJVUP010000063 DAJVUP010000000
VERSION     DAJVUP010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20907
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.063"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(157..702)
                     /gene="hemG"
                     /locus_tag="OQQ75_002126"
     CDS             complement(157..702)
                     /gene="hemG"
                     /locus_tag="OQQ75_002126"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HCS1976454.1"
                     /translation="MKTLILFSTRDGQTREIASYLASELKELGIQTDVANVHRIEEPQ
                     WENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTN
                     SYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTD
                     WEQVANFAREIAQLTNKPTLK"
     gene            complement(714..2165)
                     /gene="trkH"
                     /locus_tag="OQQ75_002127"
     CDS             complement(714..2165)
                     /gene="trkH"
                     /locus_tag="OQQ75_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkH"
                     /protein_id="HCS1976455.1"
                     /translation="MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFF
                     VALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF
                     FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL
                     YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATI
                     AIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM
                     FIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLP
                     VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER
                     ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSM
                     NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE"
     gene            complement(2204..2818)
                     /locus_tag="OQQ75_002128"
     CDS             complement(2204..2818)
                     /locus_tag="OQQ75_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMPACT family protein"
                     /protein_id="HCS1976456.1"
                     /translation="MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRA
                     EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGIGEITAVVVRY
                     YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDG
                     KIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE"
     gene            complement(2818..4149)
                     /gene="pepQ"
                     /locus_tag="OQQ75_002129"
     CDS             complement(2818..4149)
                     /gene="pepQ"
                     /locus_tag="OQQ75_002129"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HCS1976457.1"
                     /translation="MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLD
                     DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE
                     DVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRS
                     FKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIV
                     ALNEHASVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKD
                     VNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP
                     HGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIES
                     LLAPWREGQFSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMTRDLKLA"
     gene            4339..6535
                     /gene="fadB"
                     /locus_tag="OQQ75_002130"
                     /pseudo
     CDS             4339..6535
                     /gene="fadB"
                     /locus_tag="OQQ75_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418288.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
     gene            6545..7708
                     /gene="fadA"
                     /locus_tag="OQQ75_002131"
     CDS             6545..7708
                     /gene="fadA"
                     /locus_tag="OQQ75_002131"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HCS1976458.1"
                     /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPA
                     LEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAA
                     RMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGI
                     SREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEA
                     LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCN
                     PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINL
                     NGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV"
     gene            complement(7900..8601)
                     /gene="fre"
                     /locus_tag="OQQ75_002132"
     CDS             complement(7900..8601)
                     /gene="fre"
                     /locus_tag="OQQ75_002132"
                     /EC_number="1.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HCS1976459.1"
                     /translation="MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDER
                     DKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDYQIVVDIPYGEAWLRDDE
                     ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLSELEALSLKHP
                     GLRVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSER
                     NAREDRLFGDAFAFI"
     gene            complement(8647..10140)
                     /gene="ubiD"
                     /locus_tag="OQQ75_002133"
     CDS             complement(8647..10140)
                     /gene="ubiD"
                     /locus_tag="OQQ75_002133"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HCS1976460.1"
                     /translation="MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR
                     AGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPK
                     GFRDLFDKLPQFKQVLNMPTKRLRGVPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
                     WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS
                     VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGY
                     IEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV
                     ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
                     MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK
                     MGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA"
     gene            10307..10795
                     /gene="rfaH"
                     /locus_tag="OQQ75_002134"
     CDS             10307..10795
                     /gene="rfaH"
                     /locus_tag="OQQ75_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription/translation regulatory transformer
                     protein RfaH"
                     /protein_id="HCS1976461.1"
                     /translation="MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT
                     AVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK
                     DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR
                     KL"
     gene            complement(10792..11574)
                     /gene="tatD"
                     /locus_tag="OQQ75_002135"
     CDS             complement(10792..11574)
                     /gene="tatD"
                     /locus_tag="OQQ75_002135"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' ssDNA/RNA exonuclease TatD"
                     /protein_id="HCS1976462.1"
                     /translation="MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQ
                     AQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAVQPEVVAIGECGLDFNRNFST
                     PEEQERAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE
                     MQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDFTPKPSS
                     RRNEPAHLHHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF"
     gene            complement(11616..12392)
                     /gene="tatC"
                     /locus_tag="OQQ75_002136"
     CDS             complement(11616..12392)
                     /gene="tatC"
                     /locus_tag="OQQ75_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatC"
                     /protein_id="HCS1976463.1"
                     /translation="MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHL
                     VSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH
                     ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA
                     LFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLL
                     AIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE"
     gene            complement(12395..12910)
                     /gene="tatB"
                     /locus_tag="OQQ75_002137"
     CDS             complement(12395..12910)
                     /gene="tatB"
                     /locus_tag="OQQ75_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HCS1976464.1"
                     /translation="MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLAT
                     TVQNELIQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPE
                     KASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT
                     AAPSPSSSDKP"
     gene            complement(12914..13183)
                     /gene="tatA"
                     /locus_tag="OQQ75_002138"
     CDS             complement(12914..13183)
                     /gene="tatA"
                     /locus_tag="OQQ75_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HCS1976465.1"
                     /translation="MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS
                     DDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV"
     gene            complement(13262..14902)
                     /gene="ubiB"
                     /locus_tag="OQQ75_002139"
     CDS             complement(13262..14902)
                     /gene="ubiB"
                     /locus_tag="OQQ75_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HCS1976466.1"
                     /translation="MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWM
                     PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDG
                     KLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDIL
                     PVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR
                     NFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFF
                     TQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFN
                     RDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR
                     RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAF
                     KEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGAT
                     LVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR"
     gene            complement(14899..15504)
                     /gene="ubiJ"
                     /locus_tag="OQQ75_002140"
     CDS             complement(14899..15504)
                     /gene="ubiJ"
                     /locus_tag="OQQ75_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiJ"
                     /protein_id="HCS1976467.1"
                     /translation="MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGF
                     STSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDI
                     QVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEA
                     ITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK"
     gene            complement(15518..16273)
                     /gene="ubiE"
                     /locus_tag="OQQ75_002141"
     CDS             complement(15518..16273)
                     /gene="ubiE"
                     /locus_tag="OQQ75_002141"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HCS1976468.1"
                     /translation="MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS
                     FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLK
                     MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVL
                     KPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQ
                     DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF"
     gene            complement(16368..17795)
                     /gene="rmuC"
                     /locus_tag="OQQ75_002142"
     CDS             complement(16368..17795)
                     /gene="rmuC"
                     /locus_tag="OQQ75_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HCS1976469.1"
                     /translation="MDFSIMVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAE
                     LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR
                     QMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF
                     GKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASG
                     LREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTR
                     ESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITE
                     ALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAI
                     GQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEY
                     RLRSVPEQPNDEAYQRDDEYNQQSR"
     gene            complement(17936..18697)
                     /gene="udp"
                     /locus_tag="OQQ75_002143"
     CDS             complement(17936..18697)
                     /gene="udp"
                     /locus_tag="OQQ75_002143"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HCS1976470.1"
                     /translation="MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKL
                     ASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI
                     NVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSD
                     TFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG
                     VIVNRTQQEIPNAETMKQTESQAVKIVVEAARRLL"
     gene            18959..19771
                     /locus_tag="OQQ75_002144"
     CDS             18959..19771
                     /locus_tag="OQQ75_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1976471.1"
                     /translation="MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPA
                     YHARPKQSDGPLPVVIVVQEIFGMHEHIRDICRRLALEGYLAIAPELYFREGDPNDFA
                     DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHN
                     PQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPVLGLYGGQDNSIPQESVETMRQA
                     LRAANAKAEIIVYPDAGHAFNADYRPSYHAESAKDGWQRMLEWFKQYGGKRS"
     gene            20165..20825
                     /gene="hcp"
                     /locus_tag="OQQ75_002145"
                     /pseudo
     CDS             20165..20825
                     /gene="hcp"
                     /locus_tag="OQQ75_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001680647.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
BASE COUNT         5109 a         5638 c         5249 g         4911 t
ORIGIN      
        1 cttttctctg ttgagattct caggagaacc ccgctgaccc ggcggcgtgt ttgccgttgt
       61 tccgtgtcag tggtggcgca ttatagggag ttattccggc ctgacaagag gaaatttaaa
      121 ataattttct gaccgcgcac tttttattct ttatgcttat ttcagcgtcg gtttgttggt
      181 taactgggcg atttctcggg cgaaattcgc cacctgctcc caatcggtat agacaacttc
      241 tttgcgcgta tccgtttcac cgcctgacat cttcataatc agcttaatca taaaacggtc
      301 gtaccagcga taacgtgggt aacgcagcgc cccggcaatg accgcgcagc gatcgggacg
      361 ccattgtgaa ctcatcagaa acttgcgcgc gtagctgttg gtctgtggag tacgcttctc
      421 cggtttgcgc gccaccaggt ttacggaata aaaggcgctc ggcatcgaat tcagtcgcgt
      481 cgcatgtttt ttgacaaatt cctggaacgc agagtggtag tgaccatagc gaatagaagc
      541 accaatgacc acacggtcat agttttccca ttgtggttct tcaatgcggt gcacattggc
      601 gacatccgtc tggatcccca gttctttcag ttccgaagcc aggtaggagg caatctcgcg
      661 cgtttgtccg tcccttgttg agaaaagaat taatgttttc acgtattact ccatcattca
      721 cgccagaaag tcggggtaaa gagcaccagc aatgtaaaga cctcgagacg accaaacagc
      781 atgttggcaa tcaggatcca tttagccacc gggttcatac tggtaaagtt atcagcaacc
      841 acgccaagcc ctggccccag gttattcaat gtcgcaacaa ctgaggcaaa ggcagaaaaa
      901 tcatccacgc ccgtggcgat aatcgccagc atactgacaa taaacaccaa tgcataggcg
      961 gagaaaaatc cccaaacggc ttcgaggata cgttccggca gtgcgcgatt ccccagctta
     1021 atgctataga cggcgttcgg atgcaccagt cgtttcagct cacggttccc ctgcttaaac
     1081 agcagcagga tgcggatcac tttcaggcca ccgcccgttg acccggcgca accgccgata
     1141 aaagctgaac ataaaagcag taccggcaaa aagagcggcc agcgggcaat gctgtcagtc
     1201 gtaaacccgg cggttgtcgc catcgatacc acctggaaaa acgcctggtt aattgtcatc
     1261 agcgccgaac tgtagacatt atgaaaccac agtacgagtg tacaaataac caccagcgta
     1321 aactgtacgc cgataaacat gcgaaattcc ggatcgcgcc aataaacctt cagactacgc
     1381 ccacttaaca gtgaaaagtg cagaccgtag ttacaaccgg agatcagcag gaagatagca
     1441 atgatagtgt taatagtcgg actgtcgaaa taaccgatac tggcatcatg tgtcgagaag
     1501 ccgccaatag cgatagtcgc aaagctatgg ccgatggcat caaaggcatc cattccggca
     1561 aaccacaacg ccagcgcaca ggcgacggtc agcaagacat aaatcaacca cagggttttc
     1621 gccgtttccg caattcgcgg gcgcattttg ttatctttca gcgggccggg catttctgcg
     1681 cgatagagct gcatcccacc cacgccgagg ataggcagta tcgcaaccgc taacacgatg
     1741 atccccatcc cgccaaacca ttgcagcatc tggcgataaa agaggatggc atgagggagc
     1801 gaatccagcc ccaccagcgt agtggccccg gtggtggtca ggccagagaa agattcaaaa
     1861 aacgcatcgg taatcgtgag gttcgggctt tccgagaaga taaaagggag cgcaccgaca
     1921 ctacccagca cggtccaaaa cagcaccact atcagaaacc cctcacggga tttcagttcg
     1981 cccttctctt tgcggttcgg ccaccacagc atagagccaa tggcgagggc gacaaaaaag
     2041 gtctgggtaa aagcgcggcc cgctccatcc cggtagatga gtgctaccag cccagggata
     2101 atcatggtcc ctgaaaataa gatgaccagt agtccaacga ttcgggtaat ggcgcgaaaa
     2161 tgcatctctg ccgcttcctt agttctgcaa aatgaagtgg ggattattct tcaatcgcta
     2221 acaattgcaa tgaaccacgg ctaaaatccg ccagctttgc ggaaaattca gccactttcg
     2281 ccgccggaag cgccacccgc agcagaacga atgcctgata atcactgttg ataattttgc
     2341 cgtcacactg ccccagcaac gcttcaatgc cggttaactg actatattca cattgcaaag
     2401 tatattcggt taatggcgtc ttgcgttggg tcgttagctg gcgcagcgcc tgattcacgc
     2461 cgccgccata cgctttcact aacccaccgg tgccaagcaa tatgccgccg tagtagcgca
     2521 ctaccacagc ggtaatttcc ccgatgccgc tgcccattag ctgggcgagc atcggtttac
     2581 ctgccgttcc cgccggctcc ccgtcgtcag agaaacccag ctgttgagaa tcatccggcg
     2641 cacccgccac ccacgccacg caatggtggc gggcatcggg gtgttctgcc cgcaccgatt
     2701 caacaaacgc tttcgccgcc tcaacgccat cggtatgcgc caacatcgtt atgaagcggc
     2761 tctttttgat ctcttcaacg accgtgaccg gtgccgcagg aattaaccag ctttccatca
     2821 cgccagtttc agatcccggg tcatgttttc cacgttattt tcgtggatca ccacgttgtc
     2881 ttcgatacga atgccgctga acggtttcag tgcttcaatt ttctgccagt tgaagtgctt
     2941 gctgaactgc ccttcacgcc acggtgccag tagcgattcg atgaagtaga tacccggttc
     3001 gatggttaac accatgcccg gctggagaat acgggtgcag cgcaggtacg gatattttgc
     3061 cggtgccgcg aggtgtgtac cgctatcatc ctgcataaaa ccggctacgt catgcacctg
     3121 caggcccagc ggatggccga taccgtgcgg cataaacggt ccggtgagat cgttttcgac
     3181 catcgcttct tcactcatat cggtgatgat ttgatgttta cgcagcaatt tggcgatgcg
     3241 ctgatggaac tggaggtggt aatccacata gctgacgcca gctttcatgg tagcgatcag
     3301 cgcaagttgt tcatcattta cgtctttcac cagctgtgcg tagtcgttgt cgctttttgc
     3361 cgaccaggta cgagtcaggt cagccgcata gccgttatat tcggccccgg catccagcag
     3421 gaagctgcgc atctcttccg gtgcctgatg atccagtttg gtgtaatgca gcaccgaagc
     3481 gtgttcgtta agcgccacaa tgttgctgta aggtacgtcg gtatcacgat gaccggtcgc
     3541 ggtcagatag gcgatgttga tatcgaactc gctcatgcca gaacggaacg cttcttctgc
     3601 cgcacgatga ccgttgaccg ccattttctg cgcttcacgc atacaggcca gttcgtactc
     3661 ggttttgaag gagcggtagt aatgcaggta gtcgatcacc cctttcgggt tgatgttgct
     3721 ggcctcaata cccagttgca gcgcacgttc cggcaccgga ccgatataac cgatattgcc
     3781 gcgcgcagcg ggcagcaggc taccaatgcc atcggctttc ggcagtgcga tcacttccac
     3841 atcttcagtc cagaaggagg tcggcagcgg ttcgacgttg tgccagtaat caaccggcag
     3901 atagaaccac agtttcggct tgttcacgcc atccaccagc aaccagcagt ttggcacctg
     3961 agttaccggc acccacgctt tgaattgcgg gttcacttta aacggatagg gatgatcgtc
     4021 gagaaaaacg ttgaacagct cgccggagtg aataagtaat gcatccagct tgaagcgcgc
     4081 cagcgcatcg cgagtccgtt cttgtaaggt agctatatga tttttataga gcgaggccag
     4141 tgattccatt ttttaccctt ctgttttttt gaccttaagt ctccgcatct tagcacatcg
     4201 ttcatccaga gcgtgatttc tgccgagcgt gatcagatcg gcatttcttt aatcttttat
     4261 ttacatgttt ttaacacaaa atacacactt cgatgcatct ggtacgacca gatcaccttg
     4321 cggattcagg agactgacat gctttacaaa ggcgacaccc tgtaccttga ctggctggaa
     4381 gatggcattg ccgaactggt atttgatgcc ccaggttcag ttaataaact cgacactgcg
     4441 accgtcgcca gcctcggcga ggccatcggc gtgctggaac agcaatcaga tctaaaaggg
     4501 ctgctgctgc gttcgaacaa agcagccttt atcgtcggtg ctgatatcac cgaatttttg
     4561 tccctgttcc tcgttcctcg ttcctgaaga acagttaagt cagtggctgc actttgccaa
     4621 tagcgtgttt aatcgcttgg aagatctgcc ggtgccgacc attgctgccg tcaacggcta
     4681 tgcgctgggt ggtggctgcg aatgcgtgct ggcgaccgat tatcgtctgg cgacgccgga
     4741 tctgcgcatc ggtctgccgg aaaccaaact gggcatcatg ccgggctttg gcggttctgt
     4801 acgtatgcca cgtatgctgg gcgctgacag tgcgctggaa atcattgccg ccggtaaaga
     4861 tgtcggcgcg gatcaggcgc tgaaaatcgg tctggtggat ggcgtagtca aagcagaaaa
     4921 actggttgaa ggcgcaaagg cggttttacg ccaggccatt aacggcgacc tcgactggaa
     4981 agcaaaacgt cagccgaagc tggaaccact aaaactgagc aagattgaag ccaccatgag
     5041 cttcactatc gctaaaggga tggtcgcaca aacggcgggg aaacattatc cggcgcccat
     5101 caccgcagta aaaaccattg aagctgcggc ccgttttggt cgtgaagaag cattaaatct
     5161 ggaaaacaaa agctttgtcc cgctggcgca caccaacgaa gcccgcgcac tggtcggcat
     5221 tttccttaac gatcaatatg taaaaggcaa agcgaagaaa ctcaccaaag acgttgaaac
     5281 accgaaacag gccgctgtac tgggcgcagg catcatgggt ggcggcattg cttaccagtc
     5341 tgcgtggaaa ggcgtaccgg ttgtcatgaa agatatcaac gacaagtcgt taaccctcgg
     5401 catgaccgaa gccgcgaaac tgctgaacaa gcagcttgaa cgcggcaaga tcgatggtct
     5461 gaaactggct ggcgtgatct ccacgatcca cccaacgctc gactacgccg ggtttgaccg
     5521 cgtggatgtt gtggtagaag cggttgtcga aaacccgaaa gtgaaaaaag ccgtactggc
     5581 agaaaccgaa caaaaagtac gcccggatac cgtactggcg tctaacactt caaccattcc
     5641 tatcagcgaa ctggccaacg cgctggaacg cccggaaaac ttctgcggaa tgcacttttt
     5701 taacccggta caccggatgc cgttggtaga aattattcgc ggcgagaaaa gctccgacga
     5761 aaccatcgcg aaagttgtcg cctgggcgag caagatgggc aagacgccga ttgcggttaa
     5821 cgactgcccc ggcttctttg ttaaccgcgt gctgttcccg tatttcgccg gtttcagcca
     5881 gctgctgcgc gacggcgcgg atttccgcaa gatcgacaaa gtgatggaaa aacagtttgg
     5941 ctggcctatg ggtccggcat atctgctgga tgtcgtgggc attgataccg cgcatcacgc
     6001 tcaggctgtc atggcagcag gcttcccgca gcggatgcag aaagattacc gcgatgccat
     6061 cgacgcgctg tttgatgcca accgctttgg tcagaagaac ggcctcggtt tctggcgtta
     6121 taaagaagac agcaaaggta agccgaagaa agaagaagac gccgccgttg aagacctgct
     6181 ggcagaagtg agccagccga agcgcgattt cagcgaagaa gagattatcg cccgcatgat
     6241 gatcccgatg gtcaacgaag tggtccgctg tctggaagag ggcattatcg ccactccggc
     6301 ggaagcggat atggcgctgg tctacggcct gggcttccct ccgttccacg gcggcgcgtt
     6361 ccgctggctg gacaccctcg gtagcgcaaa atacctcgat atggcacagc aatatcagca
     6421 cctcggcccg ctgtatgaag tgccggaagg tctgcgtaat aaagcgcgtc ataacgaacc
     6481 gtactatcct ccggttgagc cagcccgtcc ggttggcgac ctgaaaacgg cttaaggagt
     6541 cacaatggaa caggttgtca ttgtcgatgc aattcgcacc ccgatgggcc gttcgaaggg
     6601 cggtgctttt cgtaacgtgc gtgcagaaga tctctccgct catttaatgc gtagcctgct
     6661 ggcgcgtaac ccggcgctgg aagcggcggc cctcgacgat atttactggg gttgtgtgca
     6721 gcagacgctg gagcagggtt ttaatatcgc ccgtaacgcg gcgctgctgg cagaagtgcc
     6781 gcactctgtc ccggcggtta ccgtcaatcg cttgtgtggt tcatccatgc aggcactgca
     6841 tgacgcagca cgaatgatca tgactggcga tgcgcaggca tgtctggttg gcggcgtgga
     6901 gcatatgggc catgtgccaa tgagtcacgg cgtcgatttt caccccggcc tgagccgcaa
     6961 tgtcgccaaa gcggcgggca tgatgggctt aacggcagaa atgctggcgc gtatgcacgg
     7021 tatcagccgt gaaatgcagg atgcctttgc cgcgcggtca cacgcccgcg cctgggccgc
     7081 cacgcagtcg ggcgcattta aaaatgaaat catcccgacc ggtggtcacg atgccgacgg
     7141 cgtcctgaag cagtttaatt acgacgaggt gattcgaccg gaaaccaccg tggaagccct
     7201 cgccacgctg cgtccggcgt ttgatccagt aaacggtacg gtaacggcgg gcacatcttc
     7261 tgcactttcc gatggcgcag ctgccatgct ggtgatgagt gaaagccgcg cccatgaatt
     7321 aggtcttaag ccgcgcgctc gtgtgcgttc gatggcggtc gttggttgta acccatcgat
     7381 tatgggttac ggcccggttc cggcctcgaa gctggcgctg aaaaaagcgg ggctttctgc
     7441 cagcgatatc ggcgtgtttg agatgaacga agcctttgcc gcgcagatcc tgccgtgcat
     7501 taaagatctc gggctaatgg agcagattga cgagaagatc aacctcaatg gtggtgcgat
     7561 cgcgctgggt catccgctgg gctgttccgg tgcgcgtatc agcaccacgc tgctgaatct
     7621 gatggaacgc aaagacgttc agtttggtct ggcgacgatg tgtatcggtc tgggtcaggg
     7681 tattgcgacg gtgtttgagc gggtttaacc acttgccgga tgcggcgtga acgccttatc
     7741 cggtctaccg atcctgcacc aatgtaggcc tgataagacg cgccagcgtc gcatcaggca
     7801 tcgtgcaccg attgccggat gcgacataga tctaaatgcc actgaataaa gttttagttg
     7861 ccgttcttcc cgcctgtcag gggcgggttt ttttatatct cagataaatg caaacgcatc
     7921 gccaaacaga cgatcttccc gcgcattacg ctcactgcaa aacaggtcac gagcaatttt
     7981 cgccatctca aaacgtccgg caatatagat atcatgctct gccagcgtac catgatcctg
     8041 caagaccgcc gttaacacgg tgccagtacg cccacgccag cccgcttccg gttgttcaac
     8101 caccggcacc acacgcaggc caggatgctt cagcgaaagc gcctcaagct cggagagatc
     8161 ataaagatgt tgctcctcac gcccacccca gtaaatggtg atatcgcgat tgggattacg
     8221 cgccaacgcc gtcaataaaa tcgagcgcgc ataggagaac ccggtgccgc ccgcaatcaa
     8281 aatcatcgga cgctcttcat catcgcgcag ccacgcttct ccgtagggaa tatcgaccac
     8341 gatttgataa tctttgagga tgcggtccat gactgctttc gcgtaaaggt tgatttcaga
     8401 agcgccaata tgcagctcta taaacccttt ttcatccggc gtcgaagcca ttgaaaacgg
     8461 acgtttgtcg cgctcatcca tcactaccat caaatactga ccagcacgaa aagaaaaggc
     8521 cgcgtctggc acgatgcgga cacgatatac ggtatccgtg atagcttcta ccgaggtcac
     8581 tttacagctt aaggttgtca tgcgctttct ctgtcggatc gataaatagg gcaaaacaaa
     8641 cgcgcatcag gcgcttttac cgttgttaaa aatagccagt tcatcccaga tggcgtcaat
     8701 atgcgcgaca acatctggat cttttttgat gggacgtccc cattcacgct gggtttcccc
     8761 cggccattta ttcgtggcat ccagccccat ttttgaaccc agcccggaga caggcgaggc
     8821 aaaatccaga taatcaatag gcgtattttc taccagaaca gtatcccgcg ccgggtccat
     8881 acgggtggta atcgcccaaa tcacatcgtt ccagtcgcgt gcgttgacgt catcatcgca
     8941 aacgatcaca aatttagtgt acataaactg gcgtaagaac gaccagacgc ccatcatgac
     9001 gcgcttcgcg tgtccggcgt actgtttttt gatcgtcact accgccagac gataagaaca
     9061 gccttccggc ggcaggtaaa aatcgacaat ttccgggaac tgtttttgca gaatcggtac
     9121 aaacacttcg ttcaacgcca cgcccagtac cgcgggctca tctggcggac gcccggtata
     9181 ggtggaatgg taaatcgcat cttcacgctg ggtaatatgc gtcacggtaa ataccgggaa
     9241 actatcgact tcgttatagt aaccggtgtg gtcgccatac ggcccttccg gcgcagtttc
     9301 gccttgttcg atataccctt ccagcacaat ctccgcactg gcgggcactt caaggtcatt
     9361 ggagatacac ttcaccactt cggtcttggt accgcgcagc aatccggcaa acgcatactc
     9421 tgaaagtgta tccggaacgg gggtgactgc accgagaatc gtggcgggat cggcacccag
     9481 cgccacagaa accgggaaac gttcgcccgg atgcgccgca caccactcct gataatccag
     9541 cgcgccgccg cgatgcgaca gccagcgcat aatcagtttg tttttaccaa tcagctgctg
     9601 gcgataaatg cccagattct gccgctcttt atgcgggccg cgcgtcactg tcagccccca
     9661 ggtaatcagc ggtgcggcat cttccggcca gcaggtcata atgggaatgc gattgagatc
     9721 gacgtcatcg ccagagacga ttttttgttg gcagggcaca ccacgcagcc gctttgtcgg
     9781 catgttcaat acttgcttaa actgcggcag tttatcaaac aggtcgcgga aaccttttgg
     9841 cggctccggc tctttcagaa acgccaataa tttaccaact tcacgcagcg ccgaaacatc
     9901 ttcctgtccc atgcccatcg ccacgcgctt tggcgtaccg aacaggttgc acagcaccgg
     9961 cattgagtag cctttagggt tttcgaacaa cagcgcaggc ccaccggcac gcaaagtgcg
    10021 gtcagcaatt tcagtgattt ccagatgcgg atccaccggg agcgtgatac gttttagctc
    10081 accctgctgt tcaagcagcg tcaagaagtc gcgtaaatcg ttatatttca tggcgtccat
    10141 tgtagcctct taatctacgc ccattatacg gcgttcatct ttgcgatgct gtaaatttgt
    10201 taaattagcg tgaactctga cggtataacg caaaccgggg aatataatta acttagcgta
    10261 aagcttttgc tatccttgcg ccccgattaa acggataaga gtcattatgc aatcctggta
    10321 tttactgtac tgcaagcgcg ggcaacttca acgtgcccag gaacacctcg aaagacaggc
    10381 tgtgaattgc ctggcaccga tgatcaccct ggaaaaaatc gtgcgtggaa aacgtactgc
    10441 agtcagtgag ccattgtttc ccaactacct gtttgtcgaa tttgatccag aagtgattca
    10501 taccacgact atcaacgcga cccgcggtgt cagccacttc gtgcgctttg gcgcgtcgcc
    10561 agcgatagtc ccatcggcgg tgattcatca gctatcggta tataaaccga aagacattgt
    10621 cgatccggca acaccttatc cgggtgataa ggtgattatt accgaaggcg cgttcgaagg
    10681 ctttcaggcc attttcaccg aacccgatgg tgaggctcgt tccatgctat tgcttaatct
    10741 tattaataaa gagattaagc acagtgtgaa gaacaccgag ttccgcaaac tctaaaacgc
    10801 aatcccaaac agtgttttga cattggcatc cgtggtggca gccagccatg cggcatcttc
    10861 tccacgccag tgcgcaatac gttgcaaaat atggtgcaga tgggctggct cgttgcgccg
    10921 ggatgatggc tttggcgtga aatcgcgcgg gagcagatac ggcgcatcag tttcgatcag
    10981 caatttctcc gccggaatca acggtaacaa ttcccgcagc tccagcccgc gtcgttcatc
    11041 gcaaacccaa ccggtaatgc cgatataaat tccacgcgcc acgcacgcct gcatctcttc
    11101 gcgtgtgccg gtaaagcaat gaagaaccgc accaggcagt ttatccagcc acggctccag
    11161 caatgtcata aaccgctcgt gggcatcgcg acagtgcata aataccggca tgtttaattc
    11221 tgcggcaatg cgtagctgag caacaaaagc gcgttcctgc tcttccggcg tcgaaaagtt
    11281 gcggttaaag tcgagaccac attcaccaat cgccaccact tctggctgca cggccagctc
    11341 aataatcgct tcttcagtcg cagcttgcca ctggctgctg tcgtgaggat gtacgcccgc
    11401 cgttgaccaa caggacgaat actgacgcgc cagcttttgc gcctgctggc tttcacgcag
    11461 gttagtgccg gtgatgagta gcccattaac tcccgcgtca aaagcgcgcg ctacaacatc
    11521 atcacggtct ttcgcaaatt gcgaactggt caaattaacg ccgatatcaa acatcctgta
    11581 ctccatatga caaccgccct gacgggcggt tgaatttatt cttcagtttt ttcgctttct
    11641 gcttcagcgt cgttttcctc ttcccgattt cgccctttac caacgtaaaa gcgtgagaag
    11701 aagacaccga tttcaaacag acagtacatc gggatcgcca atagcgtttg cgagaagaca
    11761 tccggcggcg tcagcaacat cccgacaacg aatgcaccaa ccagcacata cgggcgtttt
    11821 ttgcgtaagt cttctggcga ggtaatcccc atccagcaca gcagcacaat tgccaccggc
    11881 acttcaaagg agacaccaaa cgccataaac agcgccataa cgaagcttaa atagctggcg
    11941 atgtcggtgg atacctgcac cccttccggc gcggtattgg caaggaagcc aaatgccagc
    12001 ggaaagacca caaagtaggc gaatgccatg ccgatataaa acagcagaga gctggaaacc
    12061 agcagcggca ccaccaggcg acgttcatgc ttatacagcg ctggggcgat aaatgcccac
    12121 acctgataga gaatcaccgg cgctgacaga atcagcgaca ccataaaggt cagcttgatc
    12181 ggcgtaaaga acggcgaggc cacgtcggtg gcgatcatcg ttgaaccttg cggcaactgc
    12241 ttgatcaatg gcgcggatac caggtgatag atgtcattgg cgaaatagac cagacacagg
    12301 aatatcacga tcaccgcgat aatgcagttc agcagacgct tacgcagctc aattagatgc
    12361 gtgataagcg gttgagtatc ttctacagac atgtttacgg tttatcactc gacgaagggg
    12421 aaggtgcagc ggttttcggt tcagcgtccg cagcaggttt taccaccggc tctggcgtgg
    12481 tttctggctt ctgttccggc gaactggcct gcgtttgtgc agcggcaggc gttacgccct
    12541 catgcgcagc ttcattatct ttcaccaccg ggttatggat ggtgtgcgct tcatcgctcg
    12601 ccttttctgg atcgtttgca acgtaggaac gcttcatcga ctccgcggcc tggcgtagtt
    12661 catccatcga cgctttcagt tcgggcgtca ggttagtgag gctcgccttt tcaacctttt
    12721 tcagactgtc ctgaaactcc tggagtttta actcctggat cagttcgttc tgcaccgttg
    12781 tcgccagtga acgcaacgcg cgaatccagc ccgctaccgt ttttaccgcc acaggcagtc
    12841 gttgcggccc cagaacgacg aggccgatga tgaacaccaa tagcagttcg ctaaaaccga
    12901 tatcaaacac ggattacacc tgctctttat cgtggcgctt cgcgtcttct gttttagcct
    12961 gttcctgatt cgtatccgcc tgcttatcgg cgatagtttt cgcagtaaaa tcagcatcct
    13021 gactggtttt atcctgcttt ggttcatcat cgctcattgc ttttttaaag cctttgatcg
    13081 acgcaccaag atcggaaccg atggagccga gctttttggt gccaaaaagc agtacaacga
    13141 tgacggcaat aatcaataac tgccaaatac tgataccacc catacatgtt cctctgtggt
    13201 agatgatgat taaacaaagc cgcattatac gttacacggc ccgccttgag cgatgaaaaa
    13261 atcagcgtgt tttgcgccaa ccgacaaacc aggcgatcag accacctgcc attaaccagc
    13321 cgggcatcag cccccactca ggtcggctga ccaacaagaa tgtgccactt aatactaacg
    13381 tagcgccaat tccgagaaaa taacgcgatt gtccctgacg tacatgattt gactgaagct
    13441 cgcgggcaat cttatcaaca ctgtgctgta aatacttgcc ctggcgcaaa ctgtcgtaaa
    13501 ccaattcagg cagttctggc attttttcga cccagaacgg cgctttttct ttaaatgctc
    13561 tcaccagcgc aggaataccg acctgatctt taatccacga ctccaggaaa ggcttcgctg
    13621 ttttccataa atcgagctgc ggataaagct ggcgtcctac cccttcgaca tagagcaggg
    13681 ttttctggag taacaccagt tgcggctgca cttccatatt gaagcgacgc gccgtattaa
    13741 acagatttaa cagtacatgt ccaaacgaaa tttcggccag cggtttctca aagataggtt
    13801 cacagaccgt acgaatggca aattcgaact cttcaacgtt ggtatctggt ggcacccagc
    13861 ctgaatcgac gtgtagctct gccactttgc gatagtcgcg attaaagaag gcgataaagt
    13921 tttctgccag atagcgttta tcttctttgt ttagcgagcc aacaatcccg caatcaatgc
    13981 cgatatattt cgggttttcc gggtgttcat agcttacgaa gatgttgcca gggtgcatat
    14041 cggcatggaa aaagctgtcg cgaaagacct gagtgaagaa cacctgcacg ccgcgttccg
    14101 ccagcaattt catgttagtg ccgtttttct ccagcgccgc aacatcagac accggaatgc
    14161 cgtaaatgcg ctccatcacc atcatccctt cactacaata gtcagggtaa acttccggga
    14221 tgtagagcat cgggctgtct tcaaaattgc gccgaagctg aatggcgttg gcagattccc
    14281 gcagcaaatt cagttcatca atcaaggtct tttcgtactc gcgcaccact tcggttgggc
    14341 gcagacggcg accatccggc agcaaacgcg gcacccagcg agccagacgg tagataagtt
    14401 tcagatccgc tttaatgacc ggcaaaatat ccgggcggat gactttaatc accacctctt
    14461 taccattcga tttcaatcgc gcggtatgaa cctgggcgat agaagcagaa gccagcggct
    14521 tgatttcaaa atcgtcaaac cacgcttcta ccggcaagcc gcccattgca gcttcaatct
    14581 gctgcttcgc cagcttgcca tcaaacggag ctactttgtc ctgcaataac gccagctgat
    14641 cggcaatatg cggtggaaaa agatcgcggc gggttgataa catttgcccg aacttgatcc
    14701 aaaccggccc cagttcttgc agggccagtc gtagtcgctc acctaaaagt ttgtctttat
    14761 gccgatttgg catccagaat aatgagtatc gccatagccg tagcggcagg gtgatacgca
    14821 ttttggggat cagttcatca agtccgtagc ttaaaaaagt gcgaatgatg aaatataggc
    14881 gccgtacttc acctggcgtc atttagcctc cagtttttcc agccgtttgg tcagggcatc
    14941 aacagcacgc tcgacggcag ccgtctcttc cgcaaaccag gccacttcaa gcggaccggg
    15001 tgccatacgc cactcttcag taatggcttc cgccacataa cgttgctggc gcttaatgcc
    15061 gtgatgcagg aactttgcgc ctccgcgcat ggctttgctg attccttcag cggcgatatc
    15121 accggtataa ggggccagca gttccgcagg gtcgaactct gccagatctg ccagcgcaac
    15181 gaagttttgc accacctgaa tatcgccctg cacttccagc tcaccactgc gaatcagtgc
    15241 ggtaagctgc tggcgatcgc gaagtttcgg caacacactg gcgtaggcga taacggtgca
    15301 gtcagcatcg cctgcccatt cgcccagtac atcaacctgg cgttcgctga acaccagaat
    15361 caatgacgtc gaaaagcctt ttacctccac gcgcaatact ttacccagca gacgcgagcg
    15421 ggctgttttc agcgcgggtg agcgatacag gaaggtgttg agcagacttt caattcctgc
    15481 cgtcactaaa ggtttaaaag gcatttccgg tctcctgtca gaacttataa ccacgatgca
    15541 gcgccacaac ccctgccgtc agattgtagt agtcgacact ttcgaatccg gcatcctgca
    15601 tcatggcttt cagggtatcc tgatcgggat gcatacggat ggattctgcc agataacggt
    15661 agctgtcggc gtcgttcgcg accagtgagc caatacgcgg cagcacatgg aaggagtatg
    15721 catcataggc tttgctcagc ggctcgataa ttggcttcga gaactcaagc accagcaggc
    15781 ggccgccggg tttcagcacg cgatacattg aacgcagtgc tttatctttg tcggtgacgt
    15841 tacgcagacc aaacgaaatg gtgatgcaat caaaggtgtt atccgggaac ggcagcgcct
    15901 cagcgttcgc ctgaacatac tcaacgttgc caatcacacc gatattacgc agcttctcgc
    15961 gtcccatttt gagcatggat tcattgatat cagcaaggac cactttgcca gtttctccga
    16021 ccaggcggga gaatttcgct gtcaggtcgc cggtgccacc agccagatcc agcacggtct
    16081 gcccacggcg tacgccgctg caatcaatcg tgaatcgctt ccacaaacga tgaataccaa
    16141 atgacatcaa atcattcatg acatcgtatt ttgatgccac ggaatggaaa acgtgggcga
    16201 ccatatccgc tttttgttcc ttcgcgacgg tctgaaaacc aaagtgcgtc gtttcttgtg
    16261 acttatccac catctcaatg cctgctcatc aaaaaattgt tccagaagtg taacagattg
    16321 ggcgtcgatg ccctagattt ctacccggct taactacccc taatgggcta gcgcgactgc
    16381 tgattatatt catcatcgcg ttgataagct tcatcattcg gctgctccgg aaccgaccga
    16441 agtcgatact cttcatcctg gctcaccgcc tgttcagcca aatccggatt aatctcgcgt
    16501 ttaatttcta ctcctaaacc gcgaaacgct tctgcctgcg ccagcacatt tccgcgacct
    16561 gaagagagtt ttttcattgc ctggcggtag ttatcctgcg ctttgtcgag actttgacca
    16621 atcgcggaca tgtcatcgat gaacaaacgc atcttgtcgt acagcttgct ggcacgatcg
    16681 gcgatttgct gggcgttgcg gctttgatgc tcataacgcc acaggttggc aatagtacgc
    16741 aacgccacca gcagcgtagt cgggctaacc agcatgatat tgtttttcaa cgcttcggtg
    16801 atcagctccg gctggcggtc aagcgccagt aaaaaagcgg gttcaacggg aataaacatc
    16861 agcacgtaat ccagagttcg cagccccggc agctgttgat aatctttgcg tcccagcaaa
    16921 cggatatggt tacgcaccga cgcgatatgt tcctgtagcg cgctttcgcg ggtgtagtcg
    16981 tcttcggcgt taaaatagcg ttcataggcg accagcgtca ttttggcgtc gatcaccaca
    17041 tcttttccct gcggcagccg cacgatgaca tccggctgca tccgcgagcg ggcgtcattt
    17101 tcgatgctga cctgggtttc atattcatac ccttcacgca gaccggaagc ctccagcacc
    17161 cgcgtcaata ctacctcgcc ccagttgccc tgggttttat tgtcgccttt cagcgcgcgc
    17221 gtcaggttaa tcgcttcctg ggccatttgc gcgttgagtt gctggagatt gcgaatttcg
    17281 tgggtcaggg tatggcgttc ttgtgcttct ttaccgaagc tgtcctgaac ctgacggcgg
    17341 aaaccgtcca gttgttcacg tagcggcgac aacaggctgt tcagactctg acggttttgc
    17401 tcatcaaccc ggcgattgct gtgctcaaaa atacggttgg cgaggttttc aaactgctca
    17461 ctgaggcgct gctcgctgtt aatcatctgg cgaattttat cgtcagcatg ttgctgtgcg
    17521 gcttccatcc gcgtggttac ttcacgcaga tcggcctcca gagaggtgtt aatactttgc
    17581 aggctgcgca cttcgttatt gagtaactcg cactctgcac gccagtgctc gctttgggta
    17641 atttgttgtt ttgccgcgct taactccgcg accatctctt cacgttcagc taattgctcg
    17701 gctttttgct gcgcatgttg ataactggca aacagccagc caattgccac acccaccaac
    17761 gcaataactg cgtaaaccat gattgagaaa tccacaacgc ctcctgacgc aacaacttac
    17821 ccgcacaaaa tagaattgtg ctgtacaaac gtccagttgg aaaggcattt cctgcgaggc
    17881 gctacgcaaa aatacaaaag gccgaacgcg tcggccttca gacaggagaa gagaattaca
    17941 gcagacgacg cgccgcttcc accacgattt tcaccgcttg gctttcagtt tgtttcatcg
    18001 tctcagcatt cgggatctct tgctgggtgc ggttaacgat aacacccgct accataccgg
    18061 cacgcaggcc ctgacttgca cacatggtca gcagggttgc agattccatt tcatagttca
    18121 ttacgcccat cgcctgccac tcttccatag aacctttaaa gtgacgaact acgcgaccag
    18181 agtaagtatc gtaacgttcc tggcctgggt agaaggtatc agaagaagct gtcacgccaa
    18241 cgtgagttgt cgcgccaatg gatttcgcag cttcaaccag cgcagtcgta cattcgaaat
    18301 cagcgacagc cgggaattcc agcggtgcga agtgcaggct cgcgccatcc agacggacag
    18361 acgccgtggt aaccaggaca tcacccacat taatatgcgg ctgaatagcg cccgttgtac
    18421 cgatacgcag gaaggtgcga atgcccagct gtgccagctc ttcaacagca atagaggtag
    18481 acgggccgcc gataccggta gagcagacga taacaggttt accatccagc tctgcacgcc
    18541 aggtggtgaa ttcgcggtga gatgccagct taaccggctt atccatcagc gcggcgatct
    18601 tttccacacg atccgggtcg ccagggacga tggcaagcgt agccccttgt aaatcgtttt
    18661 tagtgaggcc gagatgaaaa acatcagact tggacatata caactcctct gtgaatcggt
    18721 ttagtcagaa gaagcaaaaa gacactttac cgaagggttt aacatttttt cgtgatactc
    18781 atcaccatga cgcaaatgcg ttgcataaat ttacccacca aaagtgatgc aaatcacata
    18841 aatcactctt cattctgcag gactgcataa aagatgagcc gattcaggca atgtgatttg
    18901 ttgcatgctg actatagtta acattgcgca acatttttat aagggtacgg agaataccat
    18961 ggcaacaaca caacaatctg gatttgcacc tgctgcatcg cctctcgctt cgaccatcgt
    19021 tcagaccccg gacgacgcga ttgtggcggg cttcacctct atcccttcac aaggggataa
    19081 catgcctgct taccatgcca gaccaaagca aagcgatggc ccactgccag tggtcattgt
    19141 agtgcaggaa atttttggca tgcatgaaca tatccgcgac atttgtcgcc gtctggcgct
    19201 ggaggggtat ctggctatcg cacctgaact ttacttccgc gaaggcgatc cgaatgattt
    19261 tgccgatatc cccacgttgc ttagcggtct ggtagcaaaa gtgcctgact cgcaggtgct
    19321 ggccgatctc gatcatgtcg ccagttgggc ttcccgcaac ggcggcgatg ttcatcgttt
    19381 aatgatcacc ggattctgct ggggtggacg tatcacctgg ctgtatgccg cgcataatcc
    19441 acagctaaaa gctgcagtgg cgtggtacgg caaactgacg ggcgacaagt cgctaaattc
    19501 accgaaacaa cctgttgata tcgcaaccga tcttaacgcg ccggttctcg gcttatatgg
    19561 tggtcaggat aacagcattc cgcaggagag cgttgaaacc atgcgccagg cgctgcgggc
    19621 tgctaatgcg aaagcagaga ttatcgtgta cccggacgcc gggcatgcat tcaacgctga
    19681 ttatcgcccg agctatcatg ccgaatctgc gaaagatggc tggcagcgta tgctggaatg
    19741 gtttaagcag tatggtggga agcggagtta gtttcctctt agtctatatt tgagatggtg
    19801 agtgaacgag tgcgttttgc tgccatctct gtcccccaaa aaataatcag tatgaattga
    19861 ttggagatta cgactccgct atttgacctt aagaaggtcg gcaagtcata gtcataaatg
    19921 agtctcttca atggaagaca ccttagagat ttaccatcta ctcccattca caaacaaaca
    19981 ttaattatta tcaacacatt cacattaatt ataaatcatc tcagaccttc ctgataaaaa
    20041 gatattaaag tgaaacattt tgtttttcac attttagttc atcactttta ggcgtaaata
    20101 aaggtaaaaa aaacaacaat actatttctc tttcacaaaa gaattaacaa aaggtttttt
    20161 aaggatgagt gatattattt acttgaccat aaccggagaa caacaaggat gtatttcctc
    20221 tctttgtgga acgagcgcat caataggtaa tcgctggcag attggccatg aagatgaaat
    20281 cttcgcgttc tcgctctcta atagtattac gaatgcaggc aaagggtcac aattgcatgg
    20341 ccttagtttc tgtaaattct tattaacgct attaacaata acgagcagtt gttcatggcg
    20401 tttgacttct atcggatcaa tagatttggt cgatgggaga aatattacaa cattcaactc
    20461 cgcggcgcgc tcttatcagc aatcaatcac ctgtttactg agaacaatct ggatacagaa
    20521 gccatcactg tcagttatga atatatactc tccaggcatc tgattgctaa tactgaattt
    20581 agttatttgg catttcccga taactacaac cgtctgttta taccacggcc aaaaactaaa
    20641 gctggtaatg gttcaaaaca cttaatagta aagcggttgg cagactgctt gctgctggcg
    20701 gcatatacaa tgggaatatc gaaggattca gggaaacagc agacaagttg gggggagatg
    20761 cacctgctgg ttacgatcaa tttatggata acaaagggtt actcatcgct ggtgcttcaa
    20821 tagttgctgg agcagttctg gggagaatga gactccctga tttggaatca cttgagcatt
    20881 tcggagccag aggagcagta tcaggaa
//
LOCUS       DAJVUP010000064        20734 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.064, whole genome shotgun sequence.
ACCESSION   DAJVUP010000064 DAJVUP010000000
VERSION     DAJVUP010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.064"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..260)
                     /locus_tag="OQQ75_002146"
     CDS             complement(<1..260)
                     /locus_tag="OQQ75_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976472.1"
                     /translation="MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTST
                     ITAPVVCHHCEEAPCLQVCPVNAISQRDDAILRCTGNSGHYH"
     gene            complement(513..983)
                     /gene="bcp"
                     /locus_tag="OQQ75_002147"
     CDS             complement(513..983)
                     /gene="bcp"
                     /locus_tag="OQQ75_002147"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HCS1976473.1"
                     /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP
                     GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ
                     FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA"
     gene            complement(983..1555)
                     /locus_tag="OQQ75_002148"
     CDS             complement(983..1555)
                     /locus_tag="OQQ75_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     repressor"
                     /protein_id="HCS1976474.1"
                     /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML
                     GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV
                     ADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQ
                     AFKALCTELNAQGSINVVNYSQHDEQDGVK"
     gene            1701..2579
                     /gene="dapA"
                     /locus_tag="OQQ75_002149"
     CDS             1701..2579
                     /gene="dapA"
                     /locus_tag="OQQ75_002149"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HCS1976475.1"
                     /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT
                     TGESATLNHDEHADVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT
                     VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI
                     KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC
                     KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD
                     SGRETVRAALKHAGLL"
     gene            2596..3630
                     /gene="bamC"
                     /locus_tag="OQQ75_002150"
     CDS             2596..3630
                     /gene="bamC"
                     /locus_tag="OQQ75_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708316.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HCS1976476.1"
                     /translation="MAYSVQKSRLAKVAGVSLILLLAACSSDSRYKRQVSGDEAYLEA
                     APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGVRTQFTGD
                     TASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTIDWVQWNRLDEDEQYRGR
                     YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSASDAAN
                     AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM
                     AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL
                     VAVFQAAFSK"
     gene            3843..4556
                     /gene="purC"
                     /locus_tag="OQQ75_002151"
     CDS             3843..4556
                     /gene="purC"
                     /locus_tag="OQQ75_002151"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HCS1976477.1"
                     /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD
                     RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV
                     KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND
                     VLKKRFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL
                     GGLIEAYEAVARRLGVQLD"
     gene            4724..5587
                     /locus_tag="OQQ75_002152"
     CDS             4724..5587
                     /locus_tag="OQQ75_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HCS1976478.1"
                     /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV
                     LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMG
                     KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
                     QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHNMQ
                     QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD
                     PAQCNTFGKSI"
     gene            5602..7617
                     /gene="tmcA"
                     /locus_tag="OQQ75_002153"
     CDS             5602..7617
                     /gene="tmcA"
                     /locus_tag="OQQ75_002153"
                     /EC_number="2.3.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cytosine(34) acetyltransferase TmcA"
                     /protein_id="HCS1976479.1"
                     /translation="MAELTALYTLTAQMKREGIRRLLVLSGEEGWCFDHALKLRDALL
                     GDWLWISPQPDAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL
                     VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNDAILWRQNQPFSL
                     AHFTPRTDWHPATGAPQPEQQQLLQQLLTMPPGVAAVTAARGRGKSALAGQLISRIAG
                     SAIVTAPAKAATDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV
                     SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL
                     VFDDENFTHTPQGNIVISAFEQTLWRSEPETPLKVYQLLSGAHYRTSPLDLRRMMDAP
                     GQYFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGSNPLA
                     ATLRGRRVSRIAVHPARQREGVGQQLIASALQYTQDLDYLSVSFGYTGELWRFWQRCG
                     FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYCLRRDAQALAQWNGETLPVD
                     PLNDIVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ
                     LCTTLKLAGRKMLLVRQREEAAHALFALNDVRTERLRDRITQWQFFH"
     gene            7691..8389
                     /gene="ypfH"
                     /locus_tag="OQQ75_002154"
     CDS             7691..8389
                     /gene="ypfH"
                     /locus_tag="OQQ75_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311362.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1976480.1"
                     /translation="MKHDHFVVQSPDKPVQQLLLLFLGVGDNSVAMGEIGSWFAPLFP
                     DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA
                     NATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP
                     VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEAL
                     SGGKPGDDDVIEMM"
     gene            complement(8499..8699)
                     /locus_tag="OQQ75_002155"
     CDS             complement(8499..8699)
                     /locus_tag="OQQ75_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpfN family protein"
                     /protein_id="HCS1976481.1"
                     /translation="MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPP
                     HRDFNDKWDDDDDWPKKDQPKK"
     gene            complement(8727..9854)
                     /gene="dapE"
                     /locus_tag="OQQ75_002156"
     CDS             complement(8727..9854)
                     /gene="dapE"
                     /locus_tag="OQQ75_002156"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HCS1976482.1"
                     /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD
                     FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG
                     SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV
                     GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE
                     WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE
                     KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG
                     AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA"
     gene            complement(9858..10214)
                     /locus_tag="OQQ75_002157"
     CDS             complement(9858..10214)
                     /locus_tag="OQQ75_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HCS1976483.1"
                     /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNG
                     FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPSIIKRPLLCAPGKPM
                     LLGFSDSSYQQFFHEV"
     gene            10595..10654
                     /gene="ypfM"
                     /locus_tag="OQQ75_002158"
     CDS             10595..10654
                     /gene="ypfM"
                     /locus_tag="OQQ75_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YpfM"
                     /protein_id="HCS1976484.1"
                     /translation="MIERELGNWKDFIEVMLRK"
     gene            complement(10753..13865)
                     /gene="acrD"
                     /locus_tag="OQQ75_002159"
                     /pseudo
     CDS             complement(10753..13865)
                     /gene="acrD"
                     /locus_tag="OQQ75_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease AcrD"
     gene            complement(14028..15728)
                     /gene="narQ"
                     /locus_tag="OQQ75_002160"
     CDS             complement(14028..15728)
                     /gene="narQ"
                     /locus_tag="OQQ75_002160"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HCS1976485.1"
                     /translation="MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAIN
                     IAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHL
                     NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG
                     IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTSLPNELGLLAKTFNQM
                     SSELHKLYLSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD
                     NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN
                     SVSSMLGRGLYFNQAQKHFQHLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP
                     EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK
                     LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD
                     NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM
                     "
     gene            15934..17913
                     /gene="aegA"
                     /locus_tag="OQQ75_002161"
     CDS             15934..17913
                     /gene="aegA"
                     /locus_tag="OQQ75_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent uric acid utilization protein
                     AegA"
                     /protein_id="HCS1976486.1"
                     /translation="MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITV
                     IKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTM
                     QIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLR
                     TARQEHQPWHASTAAQEMPVMSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRAD
                     LAQREASRCLKCGEHSVCEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITG
                     RVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIG
                     AGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGI
                     HFELNCEVGKDVSLDSLLEQYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTK
                     QVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG
                     SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEG
                     SEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGG
                     DAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH"
     gene            17981..18556
                     /gene="nudK"
                     /locus_tag="OQQ75_002162"
     CDS             17981..18556
                     /gene="nudK"
                     /locus_tag="OQQ75_002162"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose pyrophosphatase NudK"
                     /protein_id="HCS1976487.1"
                     /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR
                     GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAI
                     EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF
                     SQALEMIKTGEIRDGKTVLLLNYLQTSHLMD"
     gene            18682..19725
                     /locus_tag="OQQ75_002163"
     CDS             18682..19725
                     /locus_tag="OQQ75_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HCS1976488.1"
                     /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVAR
                     NTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDK
                     WRISPWLLVTDDTATITAFLQMIQEGKAITLRDGNQTISLSGLKAALLFIDAQQKRVG
                     SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL
                     DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKNPLASRPVRLRLPFNNGQ
                     ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW
                     HGPDAWPTLWITR"
     gene            complement(19835..20734)
                     /locus_tag="OQQ75_002164"
                     /pseudo
     CDS             complement(19835..20734)
                     /locus_tag="OQQ75_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311354.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; frameshifted;
                     incomplete; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transketolase"
BASE COUNT         5011 a         5301 c         5549 g         4873 t
ORIGIN      
        1 aaatggtagt gtccgctatt gccagtacac ctcaggatcg catcatccct ctgggagatg
       61 gcattgaccg ggcagacctg caggcaaggg gcttcctcac agtgatgaca cacgacaggg
      121 gcagtgattg ttgacgtctt cgccagggcc aggcgcgggt gttgctgtaa accttgcgtt
      181 ttatgcacgt ccgaacaggc agcgagacag gtattacatc ctgtacacca cagtggttcg
      241 gccaccacaa agcggttcat gtcggctcct tgaaaatgat atgaaacatt gcatttcata
      301 ttgcataaag gatgccagtc tgattaattt aatatattca ataaattatg tattaacagg
      361 gttctgaacg gtacaaaaat gatggtcatt aacgttcagc aaaaaatgga ttcgacaccc
      421 gtgtcgcagg ggaaagcgag aatgtgatct tgatcacgag aagtgaggtg tgctgaccgc
      481 aagcgcagcc agcacggaat ggagcaaagt aatcaggcgt gttctttcag ccagttcagc
      541 acaacgtcgt ggtgattgct ggttttaaaa tcgtcaaaga catgttcgat tttgccatca
      601 gcgtcaatca ggaagctgat gcgatgaata ccatcgtagg ttttgcccat gaaggacttt
      661 tcaccccaga cgccgaattg ttcgcacacc tggtggtcct catcagacag gagcgtaaag
      721 ttaagcagct ctttttccgc aaaacgggag agtttttcgg gtttatcggt gctgataccc
      781 agcacatcaa cgcccgcttt tttcaactca tccatgttat cgcgtaagcc gcaggcctgt
      841 acggtacagc cgggggtcat ggctttcggg tagaaataaa ccagaacacg ctgtccctgg
      901 aagtcggtca aattaacttg ttctccgtct tgatccggca agctaaattt cggtgcgata
      961 tcaccggctt tcagtggatt cattacttaa ctccatcctg ttcatcatgt tgggaataat
     1021 tgacgacgtt aatactgcct tgtgcattga gttctgtaca tagggctttg aacgcttgct
     1081 caatatttgc tgcgtccgca gatgcggggc tgtgggcggt gatctgaata tgcaactgcg
     1141 cagcccgttc attttcagca ggttgcgtgc gcgacaccag ctccgcaatg ttcatatgat
     1201 gcgcgtcgaa aagtgctgtg aagcgttcaa ttaaatgcgg ggagtctgca acatcgacct
     1261 gaacccagac agatgctggc attggcggac gcggacgcgc cgtcgtgcgc ttcatcacga
     1321 ttaaaagatc cagttcggca cctttcaacg gtaacgttga ttcaatcaga gtaatggcat
     1381 tccatgaacc ggaaagcagc atgataaacg tgaactcttc tcccagcatc gccaggcgac
     1441 tgtcttcaat attacagccg caactactga catgacgggt gatggtgttc acaattccag
     1501 ggcgatcggc acccaacgca gtgatcacca gataatgttg cgatgacagt gtcaaactgg
     1561 ttattccttt aaggggtgag ttgttcttaa ggaaagcata aaaaaaacat gcatacaaca
     1621 atcagaacgg ttctgtctgc ttgcttttaa tgccatacca aacgtaccat tgagacactt
     1681 gtttgcacag aggatggccc atgttcacgg gaagtattgt cgcgattgtt actccgatgg
     1741 atgaaaaagg taatgtctgt cgggctagct tgaaaaaact gattgattat catgtcgcca
     1801 gcggtacttc ggcgatcgtt tctgttggca ccactggcga gtccgctacc ttaaatcatg
     1861 acgaacatgc tgatgtggtg atgatgacgc tggagctggc tgacgggcgc attccggtga
     1921 ttgccgggac cggtgctaac gctactgcgg aagccattag cctgacgcag cgcttcaatg
     1981 acagcggtat cgtcggctgc ctgacggtaa ccccttacta caatcgtccg tcgcaagaag
     2041 gtttgtatca gcatttcaaa gccatcgctg aacatactga cctgccgcaa attctgtata
     2101 atgtgccgtc ccgtactggc tgcgatctgc tcccggaaac ggtgggccgt ctggcgaaag
     2161 taaaaaatat tatcggaatc aaagaggcaa cagggaactt aacgcgtgta aaccagatca
     2221 aagagctggt ttcagatgat tttgttctgc tgagcggcga tgatgcgagc gcgctggact
     2281 tcatgcaatt aggcggtcat ggggttattt ccgttacggc taacgtcgca gcgcgtgata
     2341 tggcccagat gtgcaaactg gcagcagaag ggcattttgc cgaggcacgc gttattaatc
     2401 agcgtctgat gccattacac aacaaactat ttgtcgaacc caatccaatc ccggtgaaat
     2461 gggcatgtaa ggaactgggt cttgtggcga ccgatacgct gcgcctgcca atgacaccaa
     2521 tcaccgacag tggtcgtgag acggtcagag cggcgcttaa gcatgccggt ttgctgtaaa
     2581 gtttagggag atttgatggc ttactctgtt caaaagtcgc gcctggcaaa ggttgcgggt
     2641 gtttcgctta ttttattact cgctgcctgt agttctgact cacgctataa gcgtcaggtc
     2701 agtggtgatg aagcctacct ggaagcggca ccgcttgcgg agcttcatgc cccggctgga
     2761 atgattttgc cggtgacctc cggtgattat gcaatcccgg tgaccaacgg tagtggtgct
     2821 gtcggtaagg cgctggacat tcgtccacca gcccagccgc tggcactggt ttctggcgtg
     2881 cgtacccagt tcacgggcga taccgcttca ttgctggtgg aaaatggtcg tggcaatact
     2941 ctgtggccgc aggtggttag cgtgctgcag gcgaaaaact acaccatcac ccaacgtgat
     3001 gatgctggtc agacactgac catcgattgg gtacaatgga accgtctgga cgaagacgag
     3061 cagtatcgtg gtcgttatca aatctctgtt aagccgcagg gttatcagca ggcggttacg
     3121 gttaaactgc tgaacctgga acaggcgggc aaaccggttg cagacgcggc ttccatgcag
     3181 cgttacagca cggagatgat gaacgttatt tccgccggtc tggataaatc tgcctctgac
     3241 gccgcgaacg ctgcgcaaaa tcgtgcctcc accactatgg acgtacaaag tgcagctgat
     3301 gacaccggtt taccgatgct ggtcgtacgc gggccgttca atgtggtttg gcaacgtctg
     3361 ccagcggcgc tggaaaaagt gggcatgaaa gtgaccgaca gcacccgttc gcagggtaac
     3421 atggccgtaa cttataagcc gctgtctgac agcgactggc aggaactggg cgcgagcgat
     3481 ccaggcctgg catccggtga ctataaactg caggttggcg atttagataa ccgcagcagc
     3541 ctacagttca tcgatccgaa aggtcatact ctgactcaga gtcagaacga cgcgctggta
     3601 gctgtcttcc aggctgcgtt tagcaagtaa aaatacaggg ctggagtcat ccggcccttt
     3661 tttctgatat gatacgcaaa cgtgtgcgtc ggcagaaaaa tgcaatttta gcggtaattc
     3721 gcacgaaatt tgtttgtcgg acgtaggtcg gataaggcgt tcttgccgca tccgacaaaa
     3781 catccggcac accagacagc aaaagatttt aaaacgttaa ttcacaccca ggagtgataa
     3841 agatgcaaaa gcaagctgag ttgtatcgtg gtaaagcgaa aaccgtatac agcacggaaa
     3901 acccggacct gttggtgctc gaattccgca atgatacgtc agcaggggat ggcgcgcgca
     3961 ttgagcagtt tgatcgcaaa ggtatggtga acaacaagtt caactacttc attatgagca
     4021 aactggctga agcgggtatc ccgactcaaa tggagcgtct gctctccgat accgaatgtc
     4081 tggtgaaaaa gctggatatg gtgccggttg agtgtgtcgt gcgtaaccgt gctgctggct
     4141 ctctggtgaa acgtcttgga atcgaagaag gtattgagct gaacccgccg ctgttcgatc
     4201 tgttcctgaa aaacgatgcc atgcacgatc cgatggtcaa cgaatcttac tgcgaaacct
     4261 ttggctgggt gagcaaagag aacctggcgc gtatgaaaga gctgacctac aaagcgaacg
     4321 acgtgctgaa aaaacggttc gatgatgctg gtctgattct ggtcgacttc aagctggagt
     4381 ttggtctgta caaaggtgaa gtggtactgg gcgatgagtt ctccccggac ggcagccgcc
     4441 tgtgggacaa agaaacactg gagaaaatgg acaaagaccg tttccgccag agcctcggtg
     4501 gcctgatcga agcctatgaa gccgtcgccc gccgcctggg tgtacagctg gactgatttt
     4561 tctgttcatc atcttgccgt gcagctggca cggcaagaca accgctctcg gaatatatgc
     4621 attgaacgct cattcctccg ccatttcatc ccgctttcct gtggtaatct tcctctgaac
     4681 cacctacgat catttctata atgaatatat tgttgaggta tctatgcgtt ggcaagggcg
     4741 acgtgaaagt gacaatgttg aagacaggcg caacagctcc ggtggtccgt ctatgggcgg
     4801 tcccggtttt cgcctgccaa gcggtaaagg cgggctgatt ttactgatag tcgtgctggt
     4861 tgcaggctac tatggtgttg atttaaccgg gttaatgact ggacagccgg tttcccaaca
     4921 acaatcaacg cggtccatta gccctaatga agacgaagct gcaaaattca cctcggtgat
     4981 tctggcaacc acggaagaca cctggggaca acagttcgag aagatgggta agacctatca
     5041 gcaaccgaag ctggtcatgt accgtggaat gacgcgcacc ggctgcgggg cgggccagtc
     5101 cattatgggg ccgttctatt gcccggcgga tggcacagtt tatatcgatc tctccttcta
     5161 tgatgacatg aaagacaaac ttggcgcgga tggcgatttt gcccaggggt acgttatcgc
     5221 ccatgaagtc ggtcatcatg tgcagaaact gttaggcatc gagccgaaag ttcgtcaact
     5281 gcaacaaaac gcgacgcagg cggaagtgaa ccgcttatct gtgcgtatgg aactccaggc
     5341 cgactgtttt gccggtgtct gggggcataa catgcagcag caaggcgttc tggaaaccgg
     5401 cgatctggaa gaggcgctga atgcggcgca ggccatcggc gatgaccgtt tacaacagca
     5461 aagtcagggg cgagtagtac cagacagttt cacacatggc acttctcagc aacgctacag
     5521 ctggtttaaa cgtggtttcg acagcggcga tccggcacaa tgcaatactt ttggtaaaag
     5581 catttaattt ccggggcagg gatggctgaa ctgactgcgc tttacacatt aacagcgcaa
     5641 atgaaacgtg aagggatccg ccgcttgctg gtgttgagcg gggaagaggg ttggtgtttt
     5701 gatcatgcgc ttaagttgcg tgatgcctta cttggcgact ggctgtggat ttcgccgcag
     5761 ccagatgctg aaaaccactg ttctccctcg gcgctacaaa ctttacttgg gcgcgagttc
     5821 cggcatgcgg tattcgacgc ccgccacggc tttgatgccg ctgcctttgc ggcacttagc
     5881 ggaacgttga aagcgggaag ctggctggtt ttgttactcc ctgtatggga agagtgggaa
     5941 aaccaacctg atgccgactc gctgcgctgg agtgattgcc ctgaccctat tgcgacgccg
     6001 cattttgtcc agcatctcaa acgcgtactt acggcggata acgacgctat tctctggcgg
     6061 caaaaccagc cgttctcgtt ggcgcatttt actccccgta ctgactggca ccccgcgacc
     6121 ggcgcaccac aaccagaaca acagcaactc ttacagcagc tactgaccat gccgccgggc
     6181 gtggcagcgg taacggctgc gcgtgggcgc ggtaagtcgg cgctggcagg gcaactcatt
     6241 tctcgtattg cgggcagtgc gattgtcacc gcgcccgcaa aagcggcaac ggatgtactg
     6301 gcacaatttg cgggcgagaa gtttcgcttt attgcgccgg atgccttgtt agccagcgat
     6361 gagcaagccg actggctggt ggtcgatgaa gccgcagcca tacctgcgcc gttgttgcat
     6421 caactggtat cgcgttttcc tcgaacgttg ttaaccacta cggtgcaggg ctacgaaggc
     6481 accggacgtg gttttttgct gaaattttgc gctcgctttc cgcatttaca ccgttttgaa
     6541 ctgcaacagc cgatccgctg ggcacaggga tgcccgctgg aaaaaatggt tagtgaggca
     6601 ctggtttttg acgatgaaaa cttcacccat acaccacaag gcaatatcgt catttccgca
     6661 tttgaacaaa cgttatggcg aagcgagcca gaaacgccgt taaaggttta tcagttattg
     6721 tctggtgcgc actaccggac ttcgccgctg gatttacgcc ggatgatgga tgcaccaggg
     6781 caatattttt tacaggcggc tggcgaaaac gagattgccg gagcgctgtg gctggtggat
     6841 gaggggggat tatctcaaca actcagtcag gcggtatggg caggttttcg tcgcccgcgg
     6901 ggtaatctgg tggcccagtc gctggcggcg cacggtagca atccactggc agcgacattg
     6961 cgtggacggc gggtcagccg gatagcagtt catccggctc gtcagcgcga aggcgttggg
     7021 caacagctca ttgccagcgc tttgcaatat acgcaagacc tcgactatct ttcggtgagt
     7081 tttggttaca ccggggagtt atggcgtttc tggcaacgct gcggttttgt gctggtacga
     7141 atgggtaatc atcgtgaagc cagcagtggt tgctatacgg cgatggcgct gttaccgatg
     7201 agtgatgcgg gtaaacagct ggctgaacgt gagcattact gtttacgtcg cgatgcgcaa
     7261 gctctcgcgc agtggaatgg cgaaacactt cctgttgatc cactaaacga tatcgtgctt
     7321 tctgacgacg actggcttga actggccggt tttgcttttg ctcatcgtcc gctattaacg
     7381 tcgttaggtt gcttattgcg tctgctacaa accagtgaac tggcattacc ggcgctgcgt
     7441 gggcgtttac agaaaaatgc cagtgatgcg cagttatgta ccacacttaa acttgcaggc
     7501 cgcaagatgt tactggtccg tcagcgggaa gaggccgcgc atgcgctgtt cgcacttaat
     7561 gatgttcgca ctgagcgtct gcgcgatcgc ataacgcaat ggcaattttt tcactgactc
     7621 cttcaatttt ctcccatggt cattgtgagc cagcggcgta aaattaatga catcagttaa
     7681 ggagttcgcc atgaaacatg accattttgt tgttcaaagc ccggataaac ctgtgcaaca
     7741 gttgttactg cttttcctcg gtgtcgggga taactcggtg gcaatggggg aaataggcag
     7801 ttggtttgca ccgctgtttc ctgatgcgct ggtggtgagt gtcggtggcg cggagccgag
     7861 cggtaatccg gcggggcgtc agtggttttc ggtgcagggt attacggaag ataatcgcca
     7921 ggcgcgtgtg gatgccatca tgccgacgtt tattgaaacg gtacgctact ggcagaaaca
     7981 gagtggagta ggggctaacg ccacggcgtt aatcggtttc tctcaaggcg cgattatggc
     8041 gctggagagt attaaagccg aaccgggcct tgcttcacgc gtaattgctt ttaacggacg
     8101 ctatgcgagc ctgccggaaa ccgcgtctac agcaacgaca attcacctga ttcatggcgg
     8161 tgaagatccg gttatcgatc tggcgcatgc ggttgcggcg caggaagcgt taatcagtgc
     8221 cggtggtgac gtgacgctgg atatcgtgga ggatttaggc catgcgatcg acaatcgcag
     8281 tatgcaattt gccctggatc acttgcgtta taccattccg aaacattatt tcgacgaagc
     8341 gctaagtggc ggtaagcctg gcgatgatga tgtgattgaa atgatgtaaa agacagatta
     8401 cctggcctga taagacgcgt gagcgtcgca tcaggcatcg ttcaccattg ccggatgcgg
     8461 cgttaacgcc ttatccggcc tacggttgag cactcagctt acttcttcgg ttgatccttt
     8521 ttcggccagt cgtcgtcatc gtcccactta tcgttgaaat cacgatgcgg gggaagctcc
     8581 ggcttgttgg cgagaaattt cttgtggtcg acgcgcttga gatctttaat cacgttcagc
     8641 aggacgccta ccaaaaagac aatcaccaga atccaccaat atttagccag ccagtccatg
     8701 cttatttcct cttgcagaac cactcatcag gcgacgagct gttccatgat acgttgatac
     8761 atacgggcaa gtagctgcag gtcggcagcg ttcacacatt cattaatttt atgaatagtg
     8821 gcattgaccg gcccgagttc caccacctgc gcccccatgc gagcaataaa gcgcccgtcg
     8881 gacgttccgc ctgtggtcag tagctgcggt ttaatttcat tatagtgctc aaccgcgtta
     8941 acgaccgcat ccaccagttt accgcgcgcg gtcaaaaatg gctgcccgga aagccaccaa
     9001 tccaccgtat agcgcagttg atgtttttca agcagggcaa gcacctgcgc tttgatcatc
     9061 tcatcagtca gttcggtgct gaagcggaag ttaaactgca caaacagttc acccggaata
     9121 acattgttac tgcccgttcc cgcctgaata ttagcaatct gcatactggt cgccgggaaa
     9181 aattcattgc cctgatccca ctcaatagcc actaattcat taaggaaagg tgctgcgcga
     9241 tgtactggat tgtcagccag atgcgggtag gccacatgcc cctgaacgcc atgaatggta
     9301 aggttgcagg ttaacgatcc gcgacgacca tttttcacca catcaccaac cacttcgata
     9361 ctcgacggtt cgccgaccag gcagtaatcg agacgctcat tacgtgccat caacgcttcg
     9421 acgactttta ccgtaccgtt gtgggcactg gcttcttcat cagaggtgat cagaaatgcc
     9481 agtcgccccg tatggttggg atgttgtgcg acaaagcgtt ctgccgctac caccatcgcc
     9541 gccagcgagc ctttcatatc tgccgcaccg cgcccgaata acatgccatc acgaatggtg
     9601 ggttcaaacg gcggattgat ccaacgatcg gcgtcgccag gcggcaccac gtcggtatgc
     9661 ccggcaaagg ctaacgtttc accttgccca cgccatgccc aaaaattctg cgtatcggca
     9721 aagtccatgc gttcaacggt aaaaccgatc gcctgcaaac gttcaatcaa caaagcctgg
     9781 catcctgcgt catcaggact cagggaaggg cggcgaataa gctgttgtgt cagctcaata
     9841 accgggcacg acatagacta cacctcatgg aaaaattgct gataactgga atcactgaaa
     9901 cccagcagca taggcttacc aggcgcgcag agcaatggac gtttgataat tgaaggcatt
     9961 tcagtcatta atgccgccgc agaggccgca tcggtgattt tattgcgggt ggtttcgtcc
    10021 agtttacgcc aggttgtacc acgggtgttc agtaacgctt cccagcctaa ttcgttgata
    10081 aaaccgttca ataattcgct gtccagccca tcgacgcggt aatcatgaaa acgatagtcg
    10141 atgttattgg cttccagcca acggcgagcc tttttaatgg tgtcacaatt tttgatgccg
    10201 taaagtgtaa ccataatgaa tcctttttcg atctatgaga ataaatactc atttaagggt
    10261 gaaaacattt tgcctgcaaa tgattatcag gaaatataac attatcgaag tattcaaatt
    10321 aacaactatt aaataatatt aaacattttt aacgtaaaca ttaagaatat tcatcttgtt
    10381 atctgtctgt attttaacca gaattaaatc agtattagat gccgtatgaa tatctcgaaa
    10441 tgttgctgtg tatcacatac aaattatcac cgcaggacca tagtatttac ataaggtttg
    10501 tcccccggag gtagtcatcg cagcaatcga gtaaattagc ttcaccacgg tatattgttt
    10561 ccgtagaata cccataatta taagagaggt tgttatgatt gaacgtgaac tggggaactg
    10621 gaaagacttt atcgaagtta tgcttcgtaa gtaattcctg agacaaagta caaacagcaa
    10681 gaacccgctg agcaggttct taatcggaaa gttgaaaaag gcgacacatt agcatgtcgc
    10741 cttttttatt gcttattccg ggcgcggctt cagcgggaag cggcggcgca ccagtacaaa
    10801 gaacagcggc acgaagtaaa tagccagaat agtggccgaa atcatcccgc ccattacgcc
    10861 agtacccacc gcatgctgac caccggaacc ggcacccgtg ctggttgcca ttggcaatac
    10921 gccgaagata aatgccagcg aggtcatcag aatcgggcgt aaacgctgac ggcaggcgtg
    10981 gagcgtcgct tcaaacaggt cgtggccttt ttggttcatc tcgttagcaa actcgacgat
    11041 caggatggcg tttttcgccg ataaaccaat gaccgttaac aggcccacct ggaagtaaac
    11101 gtcgttttcc agcccgcgca tccaggttgc cagcagcgcg ccgataaccc ccagcggcac
    11161 gaccagcatt accgagaacg gcaccgacca gctttcatac aacgccgcca gacacaggaa
    11221 taccaccagc aaggaaatgg cgtacagcgc cggagcctgc gcgccggaaa gccgctcctg
    11281 atacgacatc gccgtccact ccagaccaaa gccgtttggc aactgcttca ctaacgattc
    11341 cattatatcc atcgccgtac cggtactgac ccccggtgcg gcttccccaa caatctcaac
    11401 cgcagaataa ccgttatagc gttccagacg cggcgagcca gtctcccagc gtgaggtcgc
    11461 gaaagcagag aagggcacca tgccgccatc tttatttcgg acataccaga gattaatgtc
    11521 atctggcagc atgcgatacg gcgcagctgc ctgcacatag actttcttca cacgaccgcg
    11581 atccataaag tcattcacat agctcgaacc ccaggcggtt tgcagtgtgt cgttaatatc
    11641 gtcgatagca acgcccagcg cctgagcttt acgctggtcg atatcaatct gcaactgcgg
    11701 actgtcatcg aggccgttat ggcgcacacg ggttagctcc gggttttccg ccgccagcgc
    11761 cagcaactgg ttacgtgctg ccatcagcgc atcgtgacct gctccagcgt ggtcctgcaa
    11821 ctccatatca aaacccgcag aactaccaag accgctaatt gctggcgggc tgctggcgat
    11881 aacgcgagct tctttaatct tgttaaacgc ctttgttgca cgctcgataa tggcaaacga
    11941 ggtgccggtc ttactgtcgc gttcgctcca gtctttcagg cggataaaca ttcgcgccac
    12001 gttttgcccg ttacccccag ggccagaacc aacggtggca aacaccgaca tgatgttgtc
    12061 tttttcatgg gtgaagtaat atttctcgat ttgctcaacg actttcaggg tctgttgttg
    12121 ggttgaaccg ctgggcaatt gtaccgaggt agtaaacatg ccacggtctt ccagcggtaa
    12181 gaacgacgtc ggcaaacgca ggaacaggaa caccatgccg ccaagcagca ggacataaat
    12241 cacaatccag cgcaggctgc ggtggagaat tttcgccacc cctttttcgt agcgttcggc
    12301 gttgcggtta aacatctggt taaaccaggc aaaaaagcct ttttgcccgt gatgctcacc
    12361 ttttttcagt ggcttaagta gtgtggcaca cagagccgga gtgaggatca tcgctaccag
    12421 tactgacagc accatcgccg caacaatggt aatagagaac tggcgataga tggcaccggt
    12481 ggtgccgccg aagaaggcca ttggtacaaa taccgccgaa agcaccatcg caatcccgac
    12541 cagtgccccc tggatctgcc ccatcgattt acgtgtggct tcgcgaggag tgagtccttc
    12601 ctcactcata atacgttcga cgttttccac caccacgatt gcgtcatcca ccagcagacc
    12661 gatcgccagt accatcgcga acatggttaa ggtgttgacg ctgtaaccga aggcgtaaag
    12721 tacggagaag gttcccatca acaccaccgg cacggcgata gtgggtatca gcgtggcgcg
    12781 gaagttttgc aggaacagat acataacgag gaaaaccagg gcgatagctt ccagcagcgt
    12841 tttcaccacg tcttcaatgg aggctttaac aaacgaggtt gtttcatacg ccaccttgta
    12901 ttccagtccg tgcgggaagt actgcgccag ctcgtcgaga cgattgagca ccagctccct
    12961 gtcgccattt cgtttgcgcc ggaggccagt tttaccccca gcccggaggc tggcttacca
    13021 ttgaagcggc taagataatc gtatttctcc gcccccattt cgacggtggc gacatcgccc
    13081 agccttacct ctgagccgtc ttgattcacc cgcaaggtga tatcgcggaa ctgttctggt
    13141 gtttgcagca gtgactgggc gttaatggtg gcgttgagcg cctgcttatc gacggaaggt
    13201 gtaccaccaa gttgcccaac cgcaatctgc gcgttctgtg actcaatggc atcagtgaca
    13261 tctttagccg tcatctggaa actgttgagt ttcgccgggg ccagccagat acgcatggaa
    13321 tattgcgaac cataggcatc gatatccccg acgccattca cgcggcttaa cgggtcctga
    13381 atattactgg caacataatc ggcaatatcc tgtttatcca tcgaaccatc ggtagagacg
    13441 aaagcaatgg tcagaatatt ggtatcgccg gttttacgca ccgtcacgcc ctgattttgc
    13501 accgcctgcg gtaactttcg catggctgat tgcagctggt tttgtacttg ctgcacggct
    13561 tcgtccggat cggtgcctgc tttaaaactt aaagtgacag atgcctgacc ggtgccactg
    13621 ctctgagatg acatatacat gagattatcg aggccggtca tattttgctc gataacctgg
    13681 ggcacggtgt tttccagcgt ctgggccgat gcgccgggat agttagcggt cactcgcaca
    13741 ttcggtggcg cgagatcggg gtattgttca acgggcaatg aaaaaatcgc tagggtccct
    13801 gtcagacaca acaggattgc cagcacccag gcaaaaatgg ggcgatcaat aaagaaattc
    13861 gccattaaaa gaggacctcg tgtttctgcg tatcgttgta ggcttgactt gcttcactgt
    13921 agcggcaagg tacgagccaa tcgtggagaa aaaaggagtt aatgtaaatt atcatgccct
    13981 tttatactga accttaagtg caagtattct ttggtcagta ggaggcatta catcaactga
    14041 ctttcctcac cctctgcaga gcgaaagcta atactcacta acgtgccgcc gccggaaggt
    14101 tgtgaaaaag tcagcgtccc acccagccgt tccgcgcgtt cgcgcatgat attcagacca
    14161 taatgacctt cgggttcttt cggttcaccg ataccaatcc cgttatcacg gatataaacc
    14221 gtgtgattgc cgtccggcgc ggtgacgcaa ctgacggcga tttcgctggc gttggcgtgc
    14281 ttcatcgcat tcagcaccgc ttcgcgaata atttgcaaca aatgcacctg catttgcgca
    14341 tccagcgcaa gggttggcag acggcagtcg agggtcagtt tggcgctggt ttgattttgt
    14401 aacgtatcca gcatttccct caacgcggag gggagatccg cctgctgcag cgtcaggcgg
    14461 aaagtagtca acagctcgcg taactgccga taagcatcat tcaacgcctg ggaaaaatcg
    14521 gccatgatac tttgtgcggt ggcgttatct tccggtatcg aacgcttcag taacgtcaac
    14581 tggatacgta agtaagaaag tacctgagcc agcgagtcgt gcaattcgcg ggcgatggtt
    14641 gcacgttctt ccatcaacaa taaatgctga aaatgcttct gcgcctgatt aaagtacaaa
    14701 ccgcgtccca gcatcgacga aacgctgtta agcagcggtt ctgatgatga aacgtgacta
    14761 ttttgccagt gcagttcgcc gtaaaccgtc tcttgcattg tcaccggtaa aatctgcatc
    14821 ggcaattccg ggtttggttg cccttcgcta atccgccagt tttcaccgac atttaactcc
    14881 agatattcag ccgcttcatt gtcgcgaaca atctgcaaaa tatggcggaa acaatgcaca
    14941 tcaatctggc ttgtgttcag cgcctgcgaa cattgataca acacctccag acgacgcttg
    15001 gcctcgtgga gatcgcgggt cttttcttct actgacgcct ccagcgaaag gtacaattta
    15061 tgcagctcgc tcgacatctg gttaaaggtt tttgcaagca gaccaagctc attcggcaga
    15121 ctggtatcca gcggcggcga gtcgaactgc ccgtgttcaa tacgttgact ggcggtaacc
    15181 agctgattca gcggggcaac cacctgatgg cgtatacggc gcaaagtaaa aaagaccagc
    15241 gtgaaaatac cgataccgcc agccagggaa atcgccacca ccagcagcat tttgcgttca
    15301 gcgtagtgct gtaaagccag cacgaacagg tctatctgat taacataatt attaatattg
    15361 gcctgatacc acggcaaatc gcccttgctg agccgattat tcatctccag ccagttggca
    15421 ttcagatgcg catagcgagt ttttactgct tctggcacat accagacgtt gagattggtt
    15481 aataccggtg aatgcagtgc ctgctgaaac aactggcgat gtgcattgag ttgtggactg
    15541 ccactttgca agtcgtagcc caggcggtaa ctctgcatac gcagcgatcc ggcaatattg
    15601 atagcctcag cgtcgcgcaa actgctcgcc agagttagca gagcgatacc cgtggaaaga
    15661 atcgacagca gcacaatgta aaaaaaggcc cgggccagac tggccgagac gggtcgttta
    15721 acaatcacac gcgtcttctc cacaaaaaat cattaatgtt ccagttcgct gaaacgcaat
    15781 ttagtcagtg atgggattat ttgagctgcc acagtttata gcgaaatagt tacttattct
    15841 gggcacatga acattgccga ttcccctgta agtcgggtaa taacaacact catataaaga
    15901 ataaggtttt tacaaccaaa aaagaaggtc gttatgaatc gttttattat ggccaacagt
    15961 cagcaatgtc tgggttgtca tgcttgtgaa atcgcctgtg tcatggctca caatgatgag
    16021 caacatgtcc tgagccaaca ccattttcat ccccgaatta cggttatcaa acatcagcag
    16081 caacgtagtg cagtgacctg tcaccattgt gaagatgcgc cctgcgcccg tagctgccct
    16141 aatggcgcaa tcagccacgt tgatgacagc attcaggtca atcagcaaaa gtgtattggc
    16201 tgtaaatcct gcgtggtggc ctgtccgttt ggtacgatgc aaatcgtcct gacacccgtc
    16261 gcggcaggaa aagtaaaagc cacggcgcat aaatgcgacc tttgtgcagg gcgcgaaaac
    16321 ggtcctgcct gtgtcgagaa ttgcccggcg gacgcgctgc aactggtcac tgacgtcgca
    16381 ctctccggca tggcgaaatc ccgccgcttg cgcaccgcac gtcaggagca tcaaccgtgg
    16441 catgccagta ccgctgcaca agaaatgccg gtaatgagta aagtcgaaca aatgcaggca
    16501 acgcccgcgc gtggcgagcc ggataaactg gcgattgaag cgcgcaaaac cggttttgat
    16561 gaaatttatc tgccatttcg cgccgacctg gcacaacggg aagcctcgcg ctgccttaag
    16621 tgcggcgagc acagcgtttg tgaatggacc tgcccgctgc ataaccatat tccgcagtgg
    16681 attgaactgg tgaaagccgg aaacatcgac gccgccgtcg agctttctca ccagaccaac
    16741 accctgccgg aaattaccgg acgcgtttgt ccgcaagacc gtttgtgtga aggtgcctgt
    16801 actattcgcg atgagcacgg cgcggtaact atcggcaaca ttgaacgcta tatttcagat
    16861 caggcgttgg cgaaaggttg gcgtcctgac ttaagtcatg tcaccaaagt ggacaagcgg
    16921 gtggcgatta tcggggcagg tccggcaggg ctggcctgtg cggatgttct gacccgcaat
    16981 ggcgtggcgg tgacggtgta cgatcgccat ccagaaatcg gtggcttgct cactttcggc
    17041 attccttctt tcaaactgga taaatccctg ctggcacgcc gtcgggaaat cttcagcgcg
    17101 atggggattc acttcgaact caattgtgaa gtgggtaaag atgtctcttt ggattcgctt
    17161 ttggaacaat acgacgcggt cttcgttggc gtaggcactt accgttccat gaaagcgggt
    17221 ttacccaatg aagatgcgcc gggcgtttat gacgcgctgc cgttcctcat cgccaacact
    17281 aaacaggtga tggggctcga agagctaccg gaagagccgt ttatcaatac cgccggactt
    17341 aacgtcgtgg tactgggcgg cggcgacacc gcgatggact gtgtgcgtac tgcgctgcgc
    17401 cacggcgcga gtaacgtcac ctgcgcttat cgtcgtgatg aagctaacat gccaggctcg
    17461 aagaaagagg tgaagaacgc ccgcgaagag ggggccaact tcgaatttaa cgtccagccg
    17521 gtggcgcttg agctgaatga acaaggtcac gtttgcggga ttcgtttcct gcgcacgcgt
    17581 cttggcgagc cggatgccca ggggcgtcgg cgtccagtac cggtggaagg cagtgaattt
    17641 gtcatgccag ccgacgcggt gattatggcg tttggcttca atccgcacgg gatgccgtgg
    17701 ctggagtcgc acggtgtaac ggtagacaaa tggggccgca tcatcgcgga tgtggaaagc
    17761 cagtaccgtt accagaccac caatccgaaa atcttcgccg gtggcgacgc cgtgcgtggt
    17821 gcggatctgg tggttaccgc aatggcagaa ggacgtcatg cggcacaggg gattattgac
    17881 tggctggggg taaaatcagt caaatctcac tgatagcctg cgcagacaaa cccgacttca
    17941 cagcgtaaga taattgttca tttcgcgctg tggagtcggt atgacgcaac aaatcaccct
    18001 cattaaagac aaaattctct ccgataacta tttcaccctg cacaacatta cctacgatct
    18061 cacgcgcaaa gatggcgaag ttatccgcca taaacgtgaa gtttacgatc gcggtaatgg
    18121 tgcgacgatc ctcctgtaca acgcgaagaa aaagaccgtg gttctgattc gtcagttccg
    18181 tgtcgctacc tgggttaatg gcaatgaaag cgggcagctg attgaaacct gcgccgggct
    18241 gctggataac gacgaaccgg aagtgtgcat tcgtaaagaa gcgattgaag agacgggcta
    18301 tgaagtgggc gaagtgcgca aattatttga actgtatatg tcgccaggcg gtgtgactga
    18361 gctaatccac ttttttatcg ccgaatacag tgacaatcag cgcgctaacg ccggtggcgg
    18421 tgtcgaagat gaagatattg aagtgctcga gctgccgttc agccaggcgc tggagatgat
    18481 caaaaccggc gagatacgtg acggtaagac ggtgttattg cttaactatt tgcaaacgtc
    18541 acatttaatg gactgaaaaa taacaataat atttcgttgt ttattattgg ctcaatccga
    18601 caaatccgat tgagccgcgc tacctgcgca acgaagatac gacttgtgct gtttgtttga
    18661 acttctgggg tcgtaccgtc catgcgctat cgcattttcc ttctcttttt tttcgctttg
    18721 ttgccgacgt ctttggtgtg ggcggcacca gcgcaacggg cgttttccga ctggcaggtc
    18781 acctgtaata accaaaactt ctgcgtggcg cgtaatacgg gcgatcataa tggactggtg
    18841 atgaccctga gccgcagcgc cggggcgcat accgatgccg ttttacgtat tgagcgcggc
    18901 ggattgaagt cgccggaggc gtcagaaggg gagatagcgc cacggctgct gttagatggc
    18961 gagccgttgg cgttaagtgg tgacaagtgg cggatttcac catggttatt agtaaccgat
    19021 gatacggcaa ccatcaccgc gtttttgcag atgattcagg aagggaaggc gatcacctta
    19081 cgcgacggca atcagaccat ttcgctgagt ggcttaaaag cggcgttgtt gtttattgat
    19141 gctcagcaaa agcgcgttgg cagtgaaacc gcgtggatca agaaagggga cgaaccgccg
    19201 ctcagcgtac cgcccgcgcc tgcgctgaaa gaggtcgcgg tggttaaccc aacgccgacg
    19261 ccactctcac tcgaagaacg caacgatttg ctggattatg gaaactggcg gatgaatggt
    19321 ctgcgctgct cgcttgatcc attgcgtcgt gaggtgaatg tcactgcgct gactgatgat
    19381 aaagcgctga tgatgattag ctgtgaggca ggggcctata acaccattga tttggcatgg
    19441 attgtgtcgc gtaaaaatcc gctggcctcg cgcccggttc ggttgcgttt gccgttcaac
    19501 aacgggcagg agacgaatga actggaactg atgaacgcaa catttgatga gaaatcgcgt
    19561 gaactggtga ccttagcgaa agggcgcgga ttaagcgatt gtggcattca ggcgcgctgg
    19621 cgctttgacg gtcagcgttt tcgcctggtg cgttacgccg cagaacccac ctgcgataac
    19681 tggcatgggc cagacgcctg gcccacgttg tggatcaccc gttaaacaaa atggcgggga
    19741 catgtaggcc ggataagacg ctgtaggccg gataagacgc gtcagagtcg catccggcaa
    19801 tcagcgtccg gcaatcagca tccggcgatc accatcaggc acctttcact cccagcacct
    19861 tatgcgcttt tgccacaata ttctcggcgg taaagccaaa gaacgggaac agcttatccg
    19921 ccggagcaga ttccccataa cctgtcatcc caacaatcgc ccctttcaaa ccaacatact
    19981 tgtaccagta atcggcaata cctgcttcca ccgccacgcg agccgcaacg ttagaaggca
    20041 acaccgactc ccgatattcc tcatcctggg cgtcgaaaat atcagtcgag ggcagggaaa
    20101 ctacgcgtac attgcgacct tctcccgcta atttctctgc cgcttgcagg gggatttcca
    20161 tctctgaacc ggtggcaatc aaaataatat ctggcttacc gccgctgtct ttcagcacat
    20221 aaccgccacg ggcaatctct tttacctgat ccggcgtacg ttccacctgg gccagattct
    20281 gccttgagag gatcagtgcc gtcggtccgt tgtggcgctc aaccgccagc ttccagccca
    20341 ccgccgcttc cacctgatcg cacggtcgcc aggtgctgaa atttggcgtt aagcgcaggc
    20401 tggccagttg ctcaacagcc tggtgcgtcg gaccatcttc gcccaggcca attgagtcgt
    20461 gggtataaac cataatctgc cgcgctttca tcagtgccgc catccgcgcg gcgttacggg
    20521 cgtattcaac aaacatcagg aacgtggcgg tatacggcac aaagccgccg tggtgcgcga
    20581 tgccgttggc tatagcggtc atgccaaatt cacgcacccc gtagtgaatg tagttgcccg
    20641 ccggatcttc cttcagcgaa acagaacctt tccagatggt caggttgctg gagccagatc
    20701 cgccgaaccg ccgagcaact caggcagcat cggc
//
LOCUS       DAJVUP010000065        20661 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.065, whole genome shotgun sequence.
ACCESSION   DAJVUP010000065 DAJVUP010000000
VERSION     DAJVUP010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20661
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.065"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..876
                     /locus_tag="OQQ75_002165"
     CDS             <1..876
                     /locus_tag="OQQ75_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CS1-pili formation C-terminal domain-containing
                     protein"
                     /protein_id="HCS1976489.1"
                     /translation="DQTSWQLSHTFYNDSFSHKELGVTVGGLNTDTINSAVNGRWDGQ
                     YGNVYATVSDSYDRKNHDHLSAFTGTYSSTLAVSRYGVNLGASGTDDLLGAVLVDVKG
                     FSEQDEESQDLQLEARVAGSRTLQLGQSDSVLFPYPGFQSGFVEVNDSSQGNQQGTTN
                     IINGAGNRELMLLPGKLRYREVSASFNYNYIGRLLLPAAVKKFPIVGLNSAMLLVAED
                     GGFTLEINGSEKELYLLSGQQFLKCPLSVEKKRASIRYSGDVTCSVVTYSQLPELKQP
                     KLRGNVQTAQREVAP"
     gene            873..1962
                     /locus_tag="OQQ75_002166"
                     /pseudo
     CDS             873..1962
                     /locus_tag="OQQ75_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001352530.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CblD"
     gene            complement(2050..3348)
                     /gene="exuT"
                     /locus_tag="OQQ75_002167"
     CDS             complement(2050..3348)
                     /gene="exuT"
                     /locus_tag="OQQ75_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708898.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexuronate transporter ExuT"
                     /protein_id="HCS1976490.1"
                     /translation="MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNIST
                     QQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSRGGLA
                     IARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVM
                     HSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKM
                     SVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFA
                     DLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCI
                     GGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFSLVVGALADTIGFSP
                     LFAVLAVFDLLGALVIWTVLQNKPAIEVAQESHNDPAPQH"
     gene            3831..5243
                     /gene="uxaC"
                     /locus_tag="OQQ75_002168"
     CDS             3831..5243
                     /gene="uxaC"
                     /locus_tag="OQQ75_002168"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HCS1976491.1"
                     /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED
                     YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH
                     WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP
                     IDSLEHHAEIAKDGSFTIKVLPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADL
                     QTALTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK
                     TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL
                     SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER
                     QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG
                     EMVKNICFNNARDYFAIELN"
     gene            5258..6745
                     /gene="uxaA"
                     /locus_tag="OQQ75_002169"
                     /pseudo
     CDS             5258..6745
                     /gene="uxaA"
                     /locus_tag="OQQ75_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199350.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
     gene            6828..7380
                     /locus_tag="OQQ75_002170"
                     /pseudo
     CDS             6828..7380
                     /locus_tag="OQQ75_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
     gene            complement(7385..8629)
                     /gene="sstT"
                     /locus_tag="OQQ75_002171"
     CDS             complement(7385..8629)
                     /gene="sstT"
                     /locus_tag="OQQ75_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HCS1976492.1"
                     /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG
                     LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF
                     SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG
                     FALRHGNETTKNLVNDLSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQL
                     LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA
                     LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA
                     SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD
                     VLFTAAACQAEDDRLANSALRN"
     gene            complement(9245..10210)
                     /gene="alx"
                     /locus_tag="OQQ75_002172"
     CDS             complement(9245..10210)
                     /gene="alx"
                     /locus_tag="OQQ75_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001098790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family membrane protein Alx"
                     /protein_id="HCS1976493.1"
                     /translation="MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAW
                     SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS
                     YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL
                     AHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI
                     FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI
                     GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINARVNYRHDKQRGE"
     gene            complement(10494..11480)
                     /locus_tag="OQQ75_002173"
     CDS             complement(10494..11480)
                     /locus_tag="OQQ75_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311996.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1976494.1"
                     /translation="MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFAN
                     DFSVEHLFTSLEAMAESDAIDAVYIASPNALHFSQTQLFLSHKIHVICEKPLASNLAE
                     VDAAIACARENQVVLFEAFKTASLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYL
                     DGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAHGVVVMD
                     YGDFSVTLLHSKVSDSVLESEIQGEAGSLVIEKLSECQKLCFVPRGSQMQDLTQPQHI
                     NTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL"
     gene            complement(11559..12242)
                     /locus_tag="OQQ75_002174"
     CDS             complement(11559..12242)
                     /locus_tag="OQQ75_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vancomycin high temperature exclusion protein"
                     /protein_id="HCS1976495.1"
                     /translation="MQPRLLLRICFSRRTLKIACLLLLVAGATIFIADRVMVNASKQL
                     TWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDE
                     ASGMQKALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWL
                     AKQYSIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHSQPKYLGPSVMIGPF
                     SEHGCPAKE"
     gene            complement(12319..12822)
                     /locus_tag="OQQ75_002175"
     CDS             complement(12319..12822)
                     /locus_tag="OQQ75_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HCS1976496.1"
                     /translation="MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATD
                     KALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIR
                     VATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQL
                     SLGQDKI"
     gene            12907..14043
                     /gene="rlmG"
                     /locus_tag="OQQ75_002176"
     CDS             12907..14043
                     /gene="rlmG"
                     /locus_tag="OQQ75_002176"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(1835)-N(2))-methyltransferase
                     RlmG"
                     /protein_id="HCS1976497.1"
                     /translation="MSHLDNGFRSLTLQRFPATDDVNPLQSWEAADEYLLQQLDDTEI
                     RGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD
                     YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG
                     PTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR
                     FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM
                     PEALDRSEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING
                     ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR"
     gene            14328..14642
                     /gene="higB"
                     /locus_tag="OQQ75_002177"
     CDS             14328..14642
                     /gene="higB"
                     /locus_tag="OQQ75_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin HigB"
                     /protein_id="HCS1976498.1"
                     /translation="MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAV
                     FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG
                     KK"
     gene            14639..15055
                     /gene="higA"
                     /locus_tag="OQQ75_002178"
     CDS             14639..15055
                     /gene="higA"
                     /locus_tag="OQQ75_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin HigA"
                     /protein_id="HCS1976499.1"
                     /translation="MIAIADILQAGEKLTAVVPFLAGIQNEEQYTQALELVDHLLLND
                     PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLADLPEIG
                     SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID"
     gene            complement(15100..17118)
                     /gene="fadH"
                     /locus_tag="OQQ75_002179"
     CDS             complement(15100..17118)
                     /gene="fadH"
                     /locus_tag="OQQ75_002179"
                     /EC_number="1.3.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
                     /protein_id="HCS1976500.1"
                     /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY
                     AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI
                     LHTGRYSYQPHLVAPSALQAPINRFVPHELTHEEILQLIDDFAHCAQLAREAGYDGVE
                     VMGSEGYLINEFLTLHTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM
                     LDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL
                     KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINT
                     CIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN
                     AAARGHQVTLFDAHSESGGQFNIAKQIPGKEEFYETLRYYHRMIEVTGVTLKLNHTVT
                     ADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF
                     DTAMYLSQPGESTSQNIARFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS
                     KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC
                     AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELNARRAIAQGTRLALEI"
     gene            complement(17544..19895)
                     /gene="ygjK"
                     /locus_tag="OQQ75_002180"
                     /pseudo
     CDS             complement(17544..19895)
                     /gene="ygjK"
                     /locus_tag="OQQ75_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417551.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
     gene            complement(19912..>20661)
                     /gene="ygjJ"
                     /locus_tag="OQQ75_002181"
     CDS             complement(19912..>20661)
                     /gene="ygjJ"
                     /locus_tag="OQQ75_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgjJ"
                     /protein_id="HCS1976501.1"
                     /translation="VPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWW
                     GDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYD
                     DKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRAD
                     GLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGG
                     RFATAFDSRFYMKNASHDPSDQIFLMQYFYW"
BASE COUNT         5036 a         5413 c         5433 g         4779 t
ORIGIN      
        1 gatcaaacgt catggcagtt atcgcatacc ttttataatg attcattcag ccataaagaa
       61 cttggcgtaa ccgtcggagg cctgaacacc gataccataa acagcgcggt taacgggcgt
      121 tgggatgggc aatacggaaa tgtctacgct accgtatctg atagttatga ccgtaagaat
      181 catgatcatc tttcggcctt tacgggcact tatagctcta cgctggctgt cagtcgctat
      241 ggcgttaatt tgggagccag tggtacagac gatttgctgg gtgcggtatt ggtggatgtg
      301 aaaggcttct ctgaacagga tgaagagagt caggatctgc aactcgaagc gcgggtggca
      361 ggcagccgaa ctttgcagct tggtcaaagc gacagtgtgt tgttccctta tcctggattt
      421 cagtctggtt ttgttgaggt taacgacagt agccagggca atcagcaggg gacaacaaac
      481 atcattaacg gtgcagggaa tcgtgaatta atgttgttgc ctggcaagct gcgctatcgc
      541 gaagtgtctg ccagctttaa ctacaactat atcggtcgtt tattactgcc ggcagcggtg
      601 aaaaaattcc cgattgtggg gctgaacagc gccatgttac tggtagctga agatggcgga
      661 tttacacttg aaattaacgg cagcgaaaaa gagctctatc tgctttccgg gcagcaattc
      721 cttaagtgtc cactgagtgt tgaaaagaaa cgcgccagca ttcgttacag cggagatgtt
      781 acttgtagtg tggtgactta ttcacaatta ccggagttga aacagcctaa attacgtgga
      841 aacgttcaga cggcgcaaag ggaggttgca ccatgagaaa tcgattgatt gcggcgatat
      901 tgggcttgtt tggcacgctc actggcgttc aggcagctcc tgacgtgacc agtgaaatta
      961 cgtatgattt ggcatctggt agagcggatt attacttctg gaaggatgaa gcgtcggcag
     1021 gaaataatgg atatatgtgg tatgaatgtt cgtatcctga cctccaacaa acctgtacag
     1081 ctaatggaaa tatatcgaca gtacaaatct atttaactga acaacgcagt gggatgcgtt
     1141 ggccggtaaa actcaaagga tttaaaacag ccattgtaag tagcgatgaa gcgccgctag
     1201 gatgcaaggg ggggcaaagg gcttcagacg aatcttaagg attctaatag atcttcatgt
     1261 acagaagatg gtcaacatta ttatatatac gatacaaagt ttcttacgct ctaccttgag
     1321 cagacagaga tgaagaattt gccgattggt ggcgtctgga aggggaaagt taaattacat
     1381 tcgaacagcc cggcccagga ctatttcgca aatattaccc tgaatacgct cgaccccaac
     1441 catattgacg tgttcttccc ggagttcgcc cacgccacgc cgagggtgca gttagacttg
     1501 catccaacag gaagcgttaa cggcagcaac tacgcgcaag atctgaccat gttggacatg
     1561 tgcctgtacg atggttttaa cggtaatgcc atcagttatg aaatcatgct caaagatgaa
     1621 gggcgaccag ctgcagggcg cagagacggt gacttctcta tctatcgtca gggaggaacc
     1681 tctaccgacg agggagaacg cattgattac cgggtcaaaa tgtacaaccc ggaaaccggt
     1741 gggcaaattg atgtgcgcaa taatgaaaat atggtctgga acagcattaa cctgaaaagt
     1801 gtgcgtccgg tggtactgcc cggtattcgc tatgccgtga tgtgtgtgcc gacacccttg
     1861 gctctggcag tcgataaatt cagcgtgatg gataaacagg ccgggtacta catgggcaaa
     1921 ttgtcagtaa tctttacgcc ttccttgcca accatcaatt aaccctgcaa agcggacaaa
     1981 cgcttttttc tatataaacg acgaagccgc ctgataaggc ggcttcgtcg ttataactta
     2041 cgttaaacgt taatgttgcg gtgcgggatc gttatgtgat tcctgcgcta cctcaatcgc
     2101 cggtttgttc tgcaacacgg tccagataac cagcgcacct aacaggtcga acactgccag
     2161 tactgcgaac agcgggctga agccgatggt gtcagccagt gcaccgacaa ccagcgaaaa
     2221 cagcgtactt gccagccatg cggacatccc ggttaaaccg ttcgccgtcg ccacttcgtt
     2281 acgaccgaac acgtcagaag agagcgtaat cagcgcgcca gacagtgcct ggtgagcaaa
     2341 accaccgata cacagcagca taattgcgac atacgggttg gtgaacaggc cgatcatacc
     2401 cgggccaatc atcagcactg cacccagcgt tacgaccatc ttacgggaaa cgatcaggtt
     2461 cacaccaaac caacgctgga acagcggcgg caggtaacca ccgaggatac aaccgaggtc
     2521 agcaaacagc atcggcatcc aggcgaacat cgcgatctct ttcaggttaa agccgtaaac
     2581 tttaaacatg aacagcggga tccacgcgtt aaaagtaccc caggctggtt ctgccaggaa
     2641 acgcggcagc gcgatacccc agaactgacg gttacgcagg atctgaccaa cggacatttt
     2701 cttcgccgtg ctcacctggt gctgggcttc ctgaccatta ataatatagt cgcgttcttc
     2761 atcggtcaga tgcttctggt cgcgcggatg tttatagaaa atcagccatg ccatcgccca
     2821 gataaagctc aatgcaccgg agatgataaa tgccatctgc cagctgtgca ttacgattgc
     2881 ccataccacc agcggcggcg caatcatcgc accaatcgaa gaacctacgt taaagtaacc
     2941 taccgcgatg gaacgctctt tcgccgggaa ccattcggag ctggctttca gacccgccgg
     3001 gatcatcgct gcttccgcgg caccgactgc accacgagca atcgccaggc cacccctgct
     3061 accagccagc gcggttgcac cacagaatac ggcccacagt acagcaaaca ttgcataacc
     3121 gattttcgta cccagcacat ccagtacata gcccgctacc ggttgcatga ccgtataagc
     3181 agcagaatag gctgcgatga tataggaata ctgttgggtg gagatgttta actcttccat
     3241 cagagttggc gcagctgccg ccacagtgtt acgcgtcagg taaccaagca cggtgccaag
     3301 cgtcaccagt gcgatcatat accaacgtaa ccctttaatt ttacgcatgt aaaacctcat
     3361 cgttttgtta tatccgcagg aagcgcggcc atcatcccgc cagaggctga agatgttagt
     3421 tacgaccggg taaccgaaaa aaaaccggca cgccccgaac gttgccatga aagtttcgtg
     3481 ctaattcggc ttccgtaccg gttaacccga ttcatctaac aaatgaatga atcggcaatt
     3541 tgcattccgt cgacttatga tttgcgacgg cagaaagatg acttgtcata caactttaaa
     3601 aggtgagagc catcataaat gtgcgaatat ttgtagggac attacctgac gacagcgagg
     3661 ccagtactgg cgcggcctgc agcgagattt accactttga gagtaatttt tttaactacg
     3721 tttattgatc taactcacga aaatatcttc ggactctgga aattggtgtg ataactttgt
     3781 cagcatcgca ccataagcaa gctagctcac tcgttgagag gaagacgaaa atgactccgt
     3841 ttatgactga agatttcctg ttagataccg aatttgcccg ccgtctgtat cacgactacg
     3901 caaaagacca gccgattttc gattaccatt gccatttgcc gccgcagcag attgcggaag
     3961 actatcgttt taaaaacctg tatgacatct ggctgaaagg cgatcactac aaatggcgcg
     4021 ctatgcgtac caacggtgtg gccgagcgtc tgtgtaccgg tgatgcgtct gaccgtgaaa
     4081 aatttgacgc ctgggcggcg actgttccgc acactatcgg caacccgtta taccactgga
     4141 cgcacctcga actgcgtcgt ccgtttggta tcactggcaa attgctttct ccgtcaactg
     4201 ccgatgaaat ctggaacgaa tgtaacgaac tgctggcgca ggataacttc tccgcgcgcg
     4261 gcatcatgca gcagatgaac gtgaaaatgg tcggcaccac cgatgacccg atcgattctc
     4321 tggagcatca cgcagagatc gccaaagacg gctctttcac catcaaagtg ctgccgagct
     4381 ggcgtccgga caaagccttc aacatcgaac aggcgacctt taacgactac atggcgaagc
     4441 tgggcgaagt ttccgatacc gacattcgcc gctttgctga cctgcaaact gccttgacca
     4501 aacgtctgga tcacttcgcc gctcacggct gtaaagtgtc tgaccatgcg ctggacgtgg
     4561 tgatgtttgc tgaagcgaac gaagcggaac tggacagcat tctggcgcgc cgtctggctg
     4621 gcgaaaccct gagcgagcac gaagtggcac agttcaaaac tgcggtactg gtgttccttg
     4681 gtgccgaata tgcacgtcgc ggctgggtac agcagtacca cattggcgcg ctgcgtaata
     4741 acaacctgcg tcagttcaaa ctgctggggc cggatgtagg ctttgactcc atcaacgacc
     4801 gtccgatggc agaagagttg tctaagctgc tgagcaagca gaacgaagaa aacctgctgc
     4861 cgaaaaccat tctgtactgc ctgaacccgc gcgataacga agtgttgggc accatgatcg
     4921 gtaacttcca gggcgaaggt atgccgggca aaatgcagtt cggttccggc tggtggttta
     4981 acgatcagaa agacggtatg gaacgtcaga tgacccaact ggcgcagctc ggtttgctga
     5041 gccgctttgt cggtatgctg actgacagcc gtagcttcct gtcatacacc cgtcacgaat
     5101 acttccgccg cattctgtgc cagatgatcg gtcgctgggt ggaagcgggc gaagcaccgg
     5161 cggacatcaa cctgctgggc gagatggtga aaaatatttg ctttaacaat gcgcgtgact
     5221 acttcgccat tgaactgaac taaggtctgg ggttgatatg caatacatca agatccatgc
     5281 gctggataac gtcgcggtcg ctttagcgga tttggctgaa ggcacagaag tcagtgtcga
     5341 taaccagact gttacgctgc gccaggatgt tgctcgtgga cataaatttg cgttaacgga
     5401 tatcgcaaaa ggggccaatg tcatcaaata tggcctgccg attggttatg cattggcgga
     5461 tattgcggcg ggggaacacg tccacgccca caatacgcgc acgaatctga gcgatctgga
     5521 tcagtatcgc tatcaacctg attttcagga tctgcctgcg caagcggcag atcgtgaagt
     5581 gcagatctat cgtcgcgcta acggcgatgt cggggtgcgt aacgagctgt ggatcctgcc
     5641 aaccgtgggc tgtgtcaacg gcatcgcgcg gcagatccag aaccgttttc tgaaagagac
     5701 caacaacgct gaaggtaccg acggcgtgtt cctcttcagc cacacctacg gctgctcaca
     5761 gctgggcgac gatcacatta atacccgcac catgctgcaa aacatggtgc gccacccgaa
     5821 cgcaggcgca gtgctggtga ttggtctggg ctgtgaaaac aactaggttg ccgcattccg
     5881 tgaaacgctg ggcgatatcg atcctgaacg cgttcatttc atgatctgcc aacagcagga
     5941 tgatgagatc gaagccggga tcgagcattt gcatcagctg tataacgtga tgcgcaacga
     6001 taaacgcgag ccaggcaaac tcagcgaact gaagtttggt ctggagtgcg gtggttctga
     6061 cggtctttct ggtattactg ctaacccgat gctggggcgt ttctctgact acgtgattgc
     6121 taacggcggt actaccgtac tgaccgaagt gccggagatg tttggcgcag agcagttgct
     6181 gatggaccat tgccgcgacg aagcaacgtt tgaaaaactg gtcaccatgg tcaacgactt
     6241 taaacagtac tttattgccc atgatcagcc gatctacgaa aacccatcac cggggaacaa
     6301 agcgggcggt atcaccacgc tggaagacaa atcacttggc tgtacccaga aagcgggttc
     6361 cagtgtcgtg gttgacgtgc tgcgttacgg cgagcgtctg aaaacgccag ggctgaactt
     6421 gttaagtgcg ccgggtaacg atgccgtagc gaccagcgcc ctggcgggtg cgggctgcca
     6481 tatggtgctg ttcagtactg gtcgcggcac gccatacggt ggatttgtgc cgacggtgaa
     6541 aatcgccacc aacagtgaac tggcggcgaa gaaaaaacac tggctcgact ttgacgcggg
     6601 tcagctgatc cacggtaaag cgatgccgca gttgctggaa gaatttatcg acaccatcgt
     6661 tgagtttgcc aacggtaaac aaacctgcaa cgagcgtaac gacttccgcg aactggcgat
     6721 cttcaaaagc ggcgtaacgc tataaagtcg aaatgagttg ttaataaaaa acggcgtttc
     6781 ataatgtgaa gcgccgtttg cttttccata cctgataagg atttatcatg accgcgtatt
     6841 ggctggccca gggcgtgggt ttcatcgcct ttctgattgg tatcacaaca tttttcaatc
     6901 gtgacgaccg tcgcttcaaa aagcagcttt cggtctatag cgccgttatt ggcgtacatt
     6961 tttttcttct gggcacctat cccgctggtg ccagtgccat ccttaatgcc attcgtacat
     7021 tgattatcct tacgcacgcg cagcttatgg gtaatggcga tttttattgt gctgactggc
     7081 ggaattggcc tcgcgaagtt ccatcatcct gtcgaactat tgccggttat cggtacgatt
     7141 gtcagtacca gggcgctgtt ccgctgtaaa gggctcacca tgcgctgcgt gatgtggttt
     7201 tcaacgtgtt gctgggtgat tcacaacttc tgggcggggt cgataggcgg cacaatgatt
     7261 gagggtagtt ttctgcttat gaatggcttg aatatcattc gtttctggcg gatgcagaaa
     7321 aggggaattg atccgtttaa agtagagaaa acccctcccg ccgtagacga aaggggttaa
     7381 acaattaatt acgcagggcg ctatttgcca gacgatcgtc ttccgcctgg caagctgccg
     7441 cagtgaacag cacgtcagtt gaagagttca gcgcggtttc gcaagagtcc tgcaatacgc
     7501 cgatgataaa gccgacggca accacctgca tggcgatatc gttcgaaata ccgaacatat
     7561 tacaggccag cgggatcagc agcagagaac cccccgccac gccggatgcg ccacaggcac
     7621 acagagaagc caccacgctc aacagcagcg ccgtgggcag atcgaccggg atacccagcg
     7681 tattaaccgc agccagcgtc aacacggtaa tggtgattgc tgcgcccgcc atattgatgg
     7741 tggcacccag cggaatagaa acggaatagg tatcgcgatc cagattcagc ttttcacaca
     7801 gtgccatatt caccggaatg ttcgccgcag agctgcgggt gaagaaggca tacacgccgc
     7861 tttcgcgcag gcacagcagc accagcggga acgggttacg acgaattttc caccacacca
     7921 gcaatgggtt aaccaccagc gccaccagta acatacagcc aaccagcacg accagcagtt
     7981 gcgcgtagcc ccacagtgtg gagaaaccgg tggttgccag ggtagaagaa accagaccaa
     8041 aaataccaat cggtgcgaag cgaatgacca gtttcaccat aaaggtgacg gcattcgaca
     8101 gatcgttgac caggtttttg gtggtctcgt taccgtgacg cagtgcgaaa ccgaggccaa
     8161 ttgcccacac caggatcccg atgtagttac ctttcagcag cgcgtcgatg gggttggaaa
     8221 ccatgctcat taccagcccg cgcatcactt ctacaatgcc tgacggtggc gaaatatcac
     8281 ccgcgctact ggataagtgc agggtagaag ggaaggcgaa gctgaaaacg actgcggcca
     8341 gagcagcaga gaaggtaccc agcagataga ggaacaaaat agggcggata ttggttttct
     8401 gcccgtgctg gtggttagca atagatgcca tcaccagcat caacaccagg atgggggcaa
     8461 cggctttcag tgcgccgacg aacaaagtac ctaacagacc aacagcttcc gccgcgggtt
     8521 ttgagatcca tgccagaaga atccccagaa caaggccgac caggatttgt tttaccaggc
     8581 tgccatgagc cagacgccgg aatagccccg gtgaacgttg cgtagtcatt tttcgatcct
     8641 ttcattgtgt tgtcgcacat ccctggtgcg ttctgtcgac gcatctttca ggatgtaaca
     8701 aagtgtttgc aaggtcgagt ataaggaaag ttacagcttc gggaagcgaa aaatgctgga
     8761 ttttaaagag aggtcatatt ttgcaactta attgttacat ttgtttgaca taaacagagg
     8821 gaaggactgg ctactaaggc tgattagata acatatgggc aaaactattt ggaatatgag
     8881 aacggttgcg ctcctttaat gtgctatgcc atataaagtc actggcgcag ggagcgcgca
     8941 gggggcagcc aatcgccgcc gccccctgca cccccaggct ctggcgaaca aaatcgccgc
     9001 tgcgcgattc cctcagctta tcccttgcgg ctaccgggtc gggcgcaagg gaacgtccct
     9061 gtaagatgcg ccctcgccgc gcatccatgc gcgtcgcccc ggcctccagg gaacgcttcg
     9121 gcgattttga cgccaccaac acccgtgcgg tctttttgta aagagctaca agccaattac
     9181 ataattaata gctcaccttt gtctggaatg agttatctct aggaatggct taatatacag
     9241 cgaatcattc tccccgctgc ttatcatgcc gataattcac cctggcgttg ataataaacg
     9301 tcatcaccag aatgccaaac accacgccca gcgagacggc gattggaata tggtagaagt
     9361 cgacaatcag catcttgata ccgataaaca ccaggatcac cgccaggcca tatttgagca
     9421 tcgagaaacg ctctgctacg cccgccagca ggaaatacat cgcacgcagg ccgaggatcg
     9481 caaacaggtt tgaggtcagc acaatgaacg ggtcagtggt cacggcgaag atagccggaa
     9541 tgctatccac ggcgaaaatc acgtcgctca attccaccag aatcagtacc agcatcagcg
     9601 gtgtggcgta cagcaatcca ttcttacgca caaagaaatg ctcgttgtcg atggtgtcgg
     9661 tcatgcgcaa atgaccgcgt agccagcgca ccagcggctt gtcgccaatg cctgattcat
     9721 cttcatgggc gagcgccatc ttcacgccgg taaacagcag gaaggcaccg aagatataca
     9781 ggatccagtc gaactgcgaa attagccagc tgccagtgaa gatcatgatg gtacgcagaa
     9841 caatcgcccc gagcacgcca tacaccagca cgcggcgttg taatgccgcc ggaacagaga
     9901 aatagctgaa caacatcagc cagacaaaga cgttatcgac cgccagcgat ttctcaatca
     9961 gataacccgt gagaaaggcc agtgcctgtg gatcggcaac ggcgcgacct tcggtttgca
    10021 ccagatacca ccagaaagcg gcgttaaaca gtaacgacag cgtcacccaa accagcgacc
    10081 aggccgcagc ctgtttcatg gtcatggcat gtgccccacg acgcccctgc aacaacaggt
    10141 cgatagccag cataatggcg acaacaacag cgaatccgcc ccatagcaac ggcgtgccga
    10201 cagtattcat agaagttcct tacacataaa aaaaacggcc aacgtcggaa gacgtcagcc
    10261 gctgcttttt atgcatagac ctcgccttcc ggcaaggtct cacttacaac aaaaaaggaa
    10321 tacgtctgcg tattcctttc ggggtgcccg gtgaccggat gtggtttttc acacatcgta
    10381 atgacgatcg accggcaatg aagttactcc cctttgcagg taacaaagta tgacagacca
    10441 ttcagccagt caatggtctg ttacatacct tttacactgt tttactttgg caattatagt
    10501 tttacgctat ctgccggaaa aatcacccca gtctggcggc ggatctcagt cagcagtttg
    10561 gcggtgatgc gactgaccgc cagccctgga tgatccacca gatgctcatc caccagggta
    10621 gcaaacagct ctgcttcgta gagcatggta ttaatatgct gcggctgggt gagatcctgc
    10681 atctggctgc cacgcggcac gaagcacagt ttctggcatt cagacagttt ttcaatcacc
    10741 agcgatcccg cttcgccctg aatctcgctt tccaggacag aatcactgac ctttgagtgc
    10801 agcaacgtaa cgctgaaatc accgtaatcc atcaccacca cgccgtgggc atctacgccg
    10861 cttgccaaca aactggcggt tgcctgcacg cttttcggtt caccgaataa tgccaccgcc
    10921 gacgccaggc agtaaaagcc gatatccata attgaaccgt tagagaatgc cggattaaag
    10981 gtgttgggat tctcaccatc caggtaacgt tgataccgcg aggaatactg gcaatagttg
    11041 aaaaagactt tacgcaattt gccgactttc ggcagcgcct ggcgcagcaa atgaaagttc
    11101 ggcaggctgg cggttttaaa tgcctcaaac agcaccacct gattttcccg cgcacaggca
    11161 atggcggcat ccacttccgc cagattcgac gccagtggtt tctcgcaaat cacatgaatt
    11221 ttatggctaa ggaaaagttg tgtctgggaa aagtgcaggg cattcgggct ggcaatatac
    11281 accgcgtcaa tggcatcgct ttccgccatc gcttccagcg aggtaaacag atgctcgaca
    11341 gaaaaatcat tggcgaagtg ctgggcctgt tcaaggctgc gggaatatac ggcggttaac
    11401 ttgtatttac cgctctcatg ggcggcctcg acgaactggc gagtgatcca gttcgtacca
    11461 atcacagcga aacgtatcat aacgcgtgga tactccataa agggattctg tcgtcaatgt
    11521 agcacgcctt tttcatcttc gacgtgcgca gatacgcatt attcttttgc cggacagcca
    11581 tgctcactaa acggcccaat catgaccgat ggcccgagat atttcggctg gctatggagg
    11641 attttggcgt caatcacggc gctgacacga gcgagtttct ctcgcagttg agtataaaaa
    11701 ccgtgcttca tattgaggtc aggcgcgtta aaaccgatag cgtcgatgct gtactgtttt
    11761 gccagccaga tggcgcgttg gttatgaaat tcttgcgaga taatggtgat atggttttca
    11821 ccaaaaacct ttttggcacg cactaccgaa tccagcgttg agaatccggc atagtcgcag
    11881 aagatcactt tcgccggtac gcctttagcg atcaaagcct tctgcatacc tgatgcttca
    11941 tcgtaatttt tacgtccgtt atcgccactt accagtagcc atttcacttt tccggcgtgg
    12001 tacaacgctg ctgcggtatc aatacgtcgg gtaaagtagc gattacccgg cctggccccc
    12061 agcaataagc ccacgttacg cgccggaact gcgttgacat cgctccaggt cagctgcttg
    12121 ctggcgttga ccattactcg atcggcgata aaaatggtcg ctcctgccac aagtaacagt
    12181 aagcaggcaa tctttagagt ccggcgagaa aaacaaatac ggagaagaag gcggggctgc
    12241 atggtcgtta tccttaacga aaggggggag gtcgatttta ggcgctaaag aaagaaaaga
    12301 taacgcctga catcattttc agattttgtc ctgcccaagc gacaactgcg ttagccacag
    12361 ccgggtgtcg aactccagct ggtggtactg cggctccata tggcagcaca actggtaaaa
    12421 cgctttgtta tgctctttct ccttcaggtg cgccagttcg tgcaccacga tcatacgtaa
    12481 aaacggttcc ggcgcgttgc gaaacacagt agcgacgcgg atctctgctt ttgctttcag
    12541 cttgccgccc tgcacacgag aaacagcggt atgtaacccg agcgcgtttt ttagcacatg
    12601 gatcttattg tcatacatca ctttattgat cggcggggca ttgcgcagaa actgattttt
    12661 tagatcctga gtatattgcc agagggcttt atcggtggcg tagtcgtgtg ttcccggata
    12721 gcgttttgcc agcacatcgc ccagacgctg ttcgttaatc agcgttcgca cctgggaaag
    12781 tagctgctcg ggataaccct gaagataagt aagattgctc ataaccgccc acgaaaaaga
    12841 gaaaaagggt atactcacgc acccttttca ggggcaacgt cgaaatttta tcattcagga
    12901 gggccgatga gccacttaga caacggtttc cgttcactga cactacaacg ttttccggcg
    12961 acggatgacg ttaacccgct acagtcgtgg gaagcggcgg atgaatattt gctgcaacag
    13021 ttggacgaca cagaaatccg cggcccggtg ttgatcctga atgatgcctt tggtgcgtta
    13081 agctgcgcgc tggcggaaca taagccgtac agcattggcg actcatacat cagtgaactg
    13141 gcgacgcgcg agaatttacg cctcaacggg attgatgagt cgagcgtgaa gtttctcgac
    13201 agcaccgccg actacccgca acagccgggt gtggtgctga tcaaagtgcc gaaaacactg
    13261 gcattgctgg aacaacaact gcgtgcgctg cgcaaagtgg tcacgtcgga tacacgtatt
    13321 attgccggtg ccaaagcccg tgacattcac acttccacgc tggaactgtt cgaaaaagtg
    13381 ctcggcccga ccaccaccac gctggcatgg aaaaaagcgc gcctgattaa ttgcacgttc
    13441 aatgaaccgc cgctggccga tgcgccgcag accgttagct ggaagctgga aggtactgac
    13501 tggactatcc ataaccatgc gaatgtcttc tcccgcaccg ggcttgatat cggcgcgcgc
    13561 ttctttatgc aacatctgcc agagaatctc gaaggggaga ttgtcgatct cggttgcggt
    13621 aatggcgtta ttggtctgac gctgcttgat aaaaatccgc aggcgaaagt ggtgtttgtc
    13681 gatgaatcgc cgatggcggt tgcttccagc cgtttgaacg ttgaaaccaa catgccagag
    13741 gcgttggatc gcagcgagtt tatgatcaac aacgcgctct ccggcgtgga gcctttccgc
    13801 tttaatgctg tgctctgcaa cccgccgttt caccaacaac atgcgctgac cgataacgtc
    13861 gcctgggaga tgttccacca tgcccgccgc tgcctgaaaa tcaacggcga gctgtatatt
    13921 gttgccaacc gtcacctgga ttacttccat aaactgaaga agattttcgg caactgcacc
    13981 accatcgcca cgaataataa atttgtggtg ctgaaagcag tgaagctggg gcgtcgtcgg
    14041 taagattggg agttacctgc cggatgcggc gttaacgcct tatccggcct acgttcagca
    14101 cgttactccc aggccggata agacgcggca agcgtcgcat ccggcaatgt ctgcccagtt
    14161 ctggaatcgc gcttccataa aacaaaaaat ccctctcacc atcctctaca ttctcttgtt
    14221 tagcgttttt ctacgtttat tcttccgtca cacagataaa ttcatacgtt gccaatctgt
    14281 caacggatgt tatcatattg ccaatttgtc aacggacgtg atgaagaatg cacctgataa
    14341 ctcaaaaagc attgaaagat gctgcggaaa aatacccgca acataaaacg gagttggtgg
    14401 ctctggggaa catgattgct aagggatatt tcaaaaaacc tgagtcatta aaagcagtat
    14461 tcccatctct ggataacttc aaatatctgg ataagcatta tgttttcaat gttgggggca
    14521 atgaattacg tgttgtagca atggtctttt ttgaatcgca aaagtgctac atacgtgaag
    14581 ttatgacgca taaagaatac gatttcttta ccgctgttca tcgtactaag gggaaaaaat
    14641 gattgcgatt gccgacatct tgcaagcagg agaaaagcta actgcggtgg taccttttct
    14701 ggcgggtatt cagaacgagg aacaatacac ccaggcgctg gaactggtag atcatctgct
    14761 gctcaacgat cctgaaaacc ccttgctgga tctggtgtgt gccaaaataa ccgcgtggga
    14821 agaatcagcg cccgaatttg cggaatttaa tgccatggct caagccatgc ctggcggtat
    14881 agccgtgatt cgtaccctta tggatcaata tggtttaacc cttgccgatc tgccggaaat
    14941 tggcagtaaa tctatggtgt cacgcgtttt gagcgggaag aggaaattaa cgctggaaca
    15001 cgctaaaaaa ttggcaacgc gattcggcat ttctcccgcc ttgtttattg attaacgcga
    15061 cgtgccggat gcgttgcatc cggcgcttca aataacgatt taaatctcca gcgccagccg
    15121 tgttccctgg gcaattgccc gtcgtgcgtt cagctccata gccacatcgc agccgccaat
    15181 taaatgcaca gttttcccgc tatcaatcag cggttgcgcc agcgcgcggt ttggctcttg
    15241 ccctgcgcag atcaccacat tgtccacagc taatacctgc gtttcgccgt tgatcaccac
    15301 atgcagcccg tcatcgtcaa tcttctgata acttacgcct gggatcattt tcacaccccg
    15361 cgagagcagg gtggtgcgat ggatccagcc ggtggttttg cctaacccct gtcccggttt
    15421 gctggctttg cgctggagca tcacaatttg ccgtgggcta cgcgggatct gcattccctg
    15481 cgggcttaag ccaccagcct gttgtaggct gctgtcgatc ccccactcat tacagaacct
    15541 ggcgatattc tggctggtgg attcgcccgg ctgacttaaa tacatcgccg tatcaaaacc
    15601 aatcccgcca caaccgatga tggcaacctt gttgcctacc ggcgctttgt cgcgcagtac
    15661 atcgagataa ctcaatacct tcggatgatc gatcccgtcg ataggcggaa cgcgcggcac
    15721 gatcccactg gcgaggatcg tttcatcgaa cgcctgtaac tgatccgccg tcacggtgtg
    15781 attgagtttc agcgtcacgc ccgtcacttc gatcatccgg tggtaatagc gcagcgtttc
    15841 gtaaaactcc tctttgccgg ggatctgttt ggcgatatta aactgcccgc cgctctcgct
    15901 gtgggcatca aacaatgtta cctgatgccc acgcgccgcc gcgttaatgg caaacgccag
    15961 cccagcaggt cccgcaccga ccaccgccag attttttttc tgcacggcag gaaggattgg
    16021 cattttggtt tcgtggcagg cgcgaggatt caccaggcac gaggtgactt tgccaacgaa
    16081 gatctgatcg aggcaggcct gattgcagcc aatgcaggtg ttgatctcat cggctcgccc
    16141 cgattgcgct tttgacagca gttccgcatc agcaagaaac ggtcgtgcca tcgataccat
    16201 atcggcatcg ccgcgcgaga gaatatcgtc ggcaacctgc ggatcgttaa tccggttggt
    16261 ggttaccagc ggcagcgaga cgtggccttt cagtttgcgc gtgacccagc taaatgcgcc
    16321 gcgcggcacg ggcgtggcaa tggtcggaat acgtgcttca tgccagccaa tgccggtgtt
    16381 gataatggtc gcgcccgccg cttcaatggc ctgcgccagc tctaccgttt cggcaaaagt
    16441 cccgccgtct tcgaccaggt cgagcatcga cagtcggtag ataataatga agtcgttgcc
    16501 gacgcgttcg cgcaccgcac gcactacttc tacggcaaat cgcatccggt tgcggtaatc
    16561 gccgccccac tggtcactac gctgattggt gtgcagcgtc agaaattcgt tgatcaaata
    16621 cccttcggac cccattacct ctacaccgtc gtatcctgcc tcccgtgcca gttgcgcgca
    16681 gtgggcgaaa tcgtcgatca gttgcaggat ctcttcatgg gtgagttcgt gaggaacgaa
    16741 acggttgatg ggggcctgca atgcggaggg agcgaccaga tgcggttggt agctgtagcg
    16801 cccggtatgc aaaatttgca gggctatttt gccgccttcc tgatgtaccg cttcggtaat
    16861 ggtgcgatgg tgtgggatct ggctggcgtc gttgagcatt gcgccacctt ccatgccaac
    16921 gcctgttaaa tctggtgcaa tgccgccgct gacaatcagc gccacgccgt gacgggcgcg
    16981 ttcggcataa aacgctgcca gccgctcggc accgtccggg tattcctcca gcccggtgtg
    17041 cattgagccc atcaacacgc ggttttttaa cgtggtaaaa cctaaatcca gcggggcgaa
    17101 cagcgacggg tagctcataa aattgtccag tatgtaaaat aattgttatg tggtcggatg
    17161 agttctaatt tagccgtcgc cggagaaaag ggaaaagggg agtgcggggt ttgtgatggg
    17221 attcaaaaag aatacgcccg gtggtaacgc cggatgcgac gcttgccgtg ttttatccgg
    17281 cctgggggat tgcacatgta gggcggataa ggcgttcacg ccgcatccgc cagtggcgcg
    17341 gtgcagatgc cggatgcgac gcttgtcgcg tcttatccga cctacgggaa cgcacatgta
    17401 gggcggataa ggcgttcacg ccgcatccgc cagtggcgcg gtgcagttgc cggatgcaac
    17461 gcttgccgcg ttttatccgg ccaggaggat tgcacatgta gggcggataa ggcgtttacg
    17521 ccgcatccgc cagcagttgc aaattattgc ttacggaaaa aatcgttata caacatatac
    17581 aaatgcgcgg cactccagga gaaatttggt gcgccttgct gcgcgccagt cagcgggttg
    17641 taattctcct gaattgggcc atcggcggtt aatcctttgg cgtgccggaa gaacgtatcc
    17701 gccagcttca gggcatcatc acgataaccg taacgctcca tccctttcag agcaaaccag
    17761 aactgatcca cccatacgcg cccgcgccag tagatatcag cgccaaaagc cggattggtt
    17821 aacgccgccg ttcccagcgg gacaaaggtg ttgaactctt taggatcgag catcaccttc
    17881 accaccgcgt cggcattggc ctgcgttgcc gcaccgttaa acagcggcga ccagccttcc
    17941 ggccctttac cgcgctcaac aatcggtttg cccgcgcagc cgttcgccag tggtttatct
    18001 tcaatacgta cgtcatagta gaactgggta gtcgggtcga acatacaggt gttgatgtag
    18061 tccgcgagct gctgtgccaa ctggcgatag cgtttggcct cttctggctt accgaggatg
    18121 gttgccatct ccgccagata atggttatcg ctgtacatat agctggcctg atccaccgac
    18181 tcctgcaata gcgagtagcc cagcaacgtt ccgtcctgac tgcggttttc ggcgaatttc
    18241 accgtccagt cgctacgttt gccaccatta gcgacatatt tatccaactg ttctttgtcg
    18301 ataaaaccaa agacggcggc atcatcacgc cccgattccc acgacgcagc gacctgtgcc
    18361 ggaatttcca gactgtcgta ctggcctttc tccaccacgc gggcgtagtt gttcagccca
    18421 gactgcgtct cttctttgtt gcctttcttc accgcaaaca gcatctcgcc gctctcagtg
    18481 ttgtgggctt tgtcgcgggt cgcgccatat tccggcacgc cgttgccgtt gtgatcgcgg
    18541 ttacgtaacc accagtcgtg ataggcgacc agtttcgggt acatctctgc caaccaggct
    18601 ttatcctggg tgacgttgta cacttctatc accgaccagg cggcaaggct gggtttggta
    18661 ttacgttcgt tccagttgcc gccatcgcca ccacgctcgg ggctaaggtt ccacgctatc
    18721 aggtcgggga caaagcccac atcctgcgga cgcacgcggt cgccaggctg gatctgccag
    18781 gagaagaccg cgcggatatt ctctttggcg atgtccggat tgaaatgcgc catcgcaaac
    18841 gcctgcttct aggtatccca cggccaggtc tgattgccgg agaaccagcg cccggtcacc
    18901 gacggtgtaa cggtgttaaa tttcaccgca ccgcccggtg agcgccagtt accgttgagc
    18961 gtttcgatcg ctttcaccgc gacgcgcgtc tgttccggcg tcgcatccgg attggttaac
    19021 cctttcttca ggtattcttc ccagcgttgc tgcgaggcgg tgagataaaa cgccggacgc
    19081 gccagaatat cgcggatctg catttgctct ttgctaactt cctgagcggt cagcagatgg
    19141 gaataggtgg tgtagagcgt ggtcgaaccg ttgatatgcg ccttactggt aaagcgatta
    19201 ccgttgattt cagtctgcac cggcagggat ttatgcacct gatattccga ttcgccggag
    19261 gtcagcagat cccaggtggc gcgcactttg ccaaaggtga ctttcaggcc atcacgggtg
    19321 gcgctgattt tgcgctgata gtcagggtat tcgccagcaa tggttttatc ggaaagcggt
    19381 ttcccttctt tcgcttccag tttttccagc agttcgccgt cccacaccag atccagcggt
    19441 ttattgctgg tgattttggt ttccagtagt gacgtgcgcg gcgtggcgaa gcgcagagtc
    19501 atttcgactt gcacatcttt tgctgtcagt ttttgcacca gcgcaccggg aatactgtat
    19561 gcctccagcg taaagtcgac tttcttgccg tcctgccaga cggtcaggcg gtcgaaattg
    19621 ctggccataa agttgatgta ctcttccgtc agcagcgcaa cgcccggaaa gccgcccatg
    19681 gtgttagggc cgtctggcaa cagatgacca tgccaggctc cgagatcgaa aaacggatta
    19741 aaacgctggt gatcgtcgta atcgtaatcc ttcatgtact gcggcgcgcc agtacggtta
    19801 atcacgtttt tataattgtc ggcgttagcg gcatgggcgg aaaaacttat cagcagagcg
    19861 caggttactg gcgttaaaat agtttttatt ttcatgaaat tacagtcctt attaccagta
    19921 gaaatattgc atcaggaaga tttggtcgct gggatcgtga gaggcatttt tcatgtagaa
    19981 gcggctatca aaagccgtgg cgaaacgtcc gccgccgtat tcgtaccaga taccaaactg
    20041 catgaaagag gtggtttcat cgtcagcgtg gtcagggcga tgtttggcgt aggtgtaagc
    20101 ggtggagaga taaacgccct ttaacgcttc atacatggcg ctcaccatca tcccactttc
    20161 acttcccggt acgtccagcc cgtcggcgcg tccggtatgg tgccaggcgc gagcggcaaa
    20221 gttaggagtt agcaggcccg tgagatagag ctgtcctgtg ccgtcggtga tttccagacc
    20281 gttcatccag gtgatgcctt cggcaaggtc atactggatg taaccgttca tcattgccgg
    20341 ataggtgtat ttgtcgtcat agcgatcgta tttgccaaaa tgtagccagg ctttgctttc
    20401 atcatgatgt ccggcaggag tcgcggtgac gctataacga aagttgccgc ttaagttctg
    20461 taccttcagc gcagtcataa tgtcgcgggt attgggaatg acgtagccca gatcgggggt
    20521 gaaatcgccc caccattgca ggtcatccag cgaggaatcc tgacgcagac tgagcatgat
    20581 ttcggtgcca tcattggtac gataaccgcc atagaaacgg ttaattccgc cctcgaaacc
    20641 accccagcta tggtctggca c
//
LOCUS       DAJVUP010000066        20593 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.066, whole genome shotgun sequence.
ACCESSION   DAJVUP010000066 DAJVUP010000000
VERSION     DAJVUP010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20593
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.066"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(56..481)
                     /gene="nudI"
                     /locus_tag="OQQ75_002182"
     CDS             complement(56..481)
                     /gene="nudI"
                     /locus_tag="OQQ75_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase NudI"
                     /protein_id="HCS1976502.1"
                     /translation="MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEYGE
                     RIEEALRREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSAN
                     REVKINEEFQDYTWVKPEDLVHYDLNVATRKTLRLKGLL"
     gene            760..1302
                     /locus_tag="OQQ75_002183"
     CDS             760..1302
                     /locus_tag="OQQ75_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976503.1"
                     /translation="MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTEST
                     GLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGG
                     LQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGK
                     DGNRDNAVADGPYVGVNASF"
     gene            1402..2604
                     /locus_tag="OQQ75_002184"
                     /pseudo
     CDS             1402..2604
                     /locus_tag="OQQ75_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416752.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide deamidase-related
                     protein YfaY"
     gene            2824..3606
                     /locus_tag="OQQ75_002185"
     CDS             2824..3606
                     /locus_tag="OQQ75_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HCS1976504.1"
                     /translation="MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYL
                     LLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCH
                     LGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLSWQPAAVQQSIIEGL
                     VWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYPDVRCVAAPVFNANNELTAAIS
                     VVGTRLQINEEYRDYLAGKSIACARDISRLLGWKSPFDLQAS"
     gene            3621..4826
                     /gene="rhmD"
                     /locus_tag="OQQ75_002186"
     CDS             3621..4826
                     /gene="rhmD"
                     /locus_tag="OQQ75_002186"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HCS1976505.1"
                     /translation="MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATP
                     MSKYRDYEQSRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEG
                     KCVSDIKLIHDQMLNATLYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
                     RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFW
                     LMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYEGYRELKRNAPVGMMVTSGE
                     HHGTLQSFRTLSETGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHA
                     VITFTNTPFSEFLMTSPDCSTMRPQFDPILLNEPVPVNGRIHKSVLDKPGFGVELNRD
                     CNLKRPYSH"
     gene            4883..6172
                     /locus_tag="OQQ75_002187"
     CDS             4883..6172
                     /locus_tag="OQQ75_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1976506.1"
                     /translation="MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQI
                     DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWAD
                     TEAKFLIVRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS
                     GALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQ
                     LASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT
                     ASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVA
                     LCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA
                     SDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH"
     gene            6190..6993
                     /gene="yfaU"
                     /locus_tag="OQQ75_002188"
     CDS             6190..6993
                     /gene="yfaU"
                     /locus_tag="OQQ75_002188"
                     /EC_number="4.1.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxy-L-rhamnonate aldolase"
                     /protein_id="HCS1976507.1"
                     /translation="MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLL
                     IDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTA
                     DQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN
                     LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV
                     APDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY"
     gene            complement(7034..7936)
                     /locus_tag="OQQ75_002189"
     CDS             complement(7034..7936)
                     /locus_tag="OQQ75_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HCS1976508.1"
                     /translation="MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQT
                     LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAA
                     MQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT
                     IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ
                     CGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLE
                     QGIDRDQVLAATQLSEADLAANNH"
     gene            complement(8129..9319)
                     /gene="glpC"
                     /locus_tag="OQQ75_002190"
     CDS             complement(8129..9319)
                     /gene="glpC"
                     /locus_tag="OQQ75_002190"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit C"
                     /protein_id="HCS1976509.1"
                     /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK
                     DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG
                     SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYK
                     DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ
                     AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWR
                     KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAG
                     TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA
                     QALA"
     gene            complement(9316..10575)
                     /gene="glpB"
                     /locus_tag="OQQ75_002191"
     CDS             complement(9316..10575)
                     /gene="glpB"
                     /locus_tag="OQQ75_002191"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase subunit GlpB"
                     /protein_id="HCS1976510.1"
                     /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS
                     LDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQL
                     QGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLH
                     ELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI
                     LMPACFGLADDKLWRWLNEKLLCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG
                     DEVKKVTCKNGVVNEIWTRNHADIPLRPHFAVLASGSFFSGGLVAERNGIREPILGLD
                     VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA
                     QGCGGGVCAVSALHAAQQIAQRAGGQQ"
     gene            complement(10565..12193)
                     /gene="glpA"
                     /locus_tag="OQQ75_002192"
     CDS             complement(10565..12193)
                     /gene="glpA"
                     /locus_tag="OQQ75_002192"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit A"
                     /protein_id="HCS1976511.1"
                     /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT
                     GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS
                     FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD
                     AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE
                     YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN
                     EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV
                     LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP
                     AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN
                     LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG
                     VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL"
     gene            12466..13824
                     /gene="glpT"
                     /locus_tag="OQQ75_002193"
     CDS             12466..13824
                     /gene="glpT"
                     /locus_tag="OQQ75_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HCS1976512.1"
                     /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV
                     RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL
                     AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV
                     WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP
                     PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS
                     PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI
                     ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
                     YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRN
                     GG"
     gene            13829..14905
                     /gene="glpQ"
                     /locus_tag="OQQ75_002194"
     CDS             13829..14905
                     /gene="glpQ"
                     /locus_tag="OQQ75_002194"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1976513.1"
                     /translation="MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP
                     EHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRY
                     YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH
                     STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI
                     KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG
                     IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL
                     YNKAGVNGLFTDFPDKAVKFLNKE"
     gene            complement(14947..15189)
                     /locus_tag="OQQ75_002195"
                     /pseudo
     CDS             complement(14947..15189)
                     /locus_tag="OQQ75_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311149.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            15368..16018
                     /gene="inaA"
                     /locus_tag="OQQ75_002196"
                     /pseudo
     CDS             15368..16018
                     /gene="inaA"
                     /locus_tag="OQQ75_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416740.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA"
     gene            complement(16072..16326)
                     /gene="yfaE"
                     /locus_tag="OQQ75_002197"
     CDS             complement(16072..16326)
                     /gene="yfaE"
                     /locus_tag="OQQ75_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like diferric-tyrosyl radical
                     cofactor maintenance protein YfaE"
                     /protein_id="HCS1976514.1"
                     /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS
                     CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM"
     gene            complement(16326..17456)
                     /gene="nrdB"
                     /locus_tag="OQQ75_002198"
     CDS             complement(16326..17456)
                     /gene="nrdB"
                     /locus_tag="OQQ75_002198"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HCS1976515.1"
                     /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ
                     LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI
                     PELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE
                     LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFA
                     FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDL
                     FVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP
                     WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL"
     gene            complement(17603..19888)
                     /gene="nrdA"
                     /locus_tag="OQQ75_002199"
     CDS             complement(17603..19888)
                     /gene="nrdA"
                     /locus_tag="OQQ75_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HCS1976516.1"
                     /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR
                     SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL
                     YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR
                     VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP
                     TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD
                     YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR
                     VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLN
                     DVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAM
                     GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECP
                     WFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET
                     SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV
                     GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED
                     AQDDLVPSIQDDGCESGACKI"
BASE COUNT         4844 a         4987 c         5524 g         5238 t
ORIGIN      
        1 aattcgttaa ccactaaatt ttcaatctga cagccagtga tggctgtcat cattgttaaa
       61 gaagaccttt caaacgtaac gtttttcggg tggcaacatt caaatcataa tgcaccagat
      121 cttcaggttt tacccacgtg tagtcctgaa actcttcgtt tattttcact tctcggttgg
      181 cagaaacgca gtcaaaaatc aggtaaatca tataaatctc ttccttgcga ccatctgcat
      241 acgtcttggt gcgaatatca tcgctgaagg tccacggcgt gatttctgtc aaaagcagct
      301 gttctcccag ttcttcgcga atttcgcggc gtagtgcctc ttcaattcgt tcgccatact
      361 ccacgccgcc acccgaaagc gcccattgac cggggaaaac gccgcgatcg tcggccattt
      421 tgcacagcag ataagcacca tcattttgaa tcaaagggca tacaatagtc cgttgtcgca
      481 caggggtatt ccttataaat aaaaagaaac catgagaata cggtaactca gaaatatgtg
      541 aaagtgacag taatctcttt tgcgatgata actgcactta ttattatttt tgtgtgtatc
      601 ggtaaagtgt gtttattttt tcggcgttta attatttaag aagtatttag ttacaataag
      661 tgactagatc ccttttttcg ctcattgaat cctctgtgcc aggcagtaca atcccgcagc
      721 tttgggaatt ttgattaatt gcttgtggga aaggggataa tgaaaaaaat tgcgctagca
      781 ggtctggccg gaatgctgtt ggtttctgca tcggtcaatg caatgagcat cagcggtcag
      841 gcgggtaaag aatacaccaa tattggtgtc ggttttggga ctgaatcgac gggcctggcg
      901 ttaagcggta actggacaca taacgacgac gacggtgacg tcgctggcgt ggggctgggg
      961 ttgaatctgc ctctagggcc gttaatggcg accgttggcg gaaaaggcgt ttacaccaac
     1021 ccgaattacg gcgatgaagg ttatgccgca gcggtaggag gtggtttgca gtggaaaatt
     1081 ggcaacagct tccgtttgtt tggcgagtat tactactctc cggattcact ctccagcggt
     1141 attcaaagtt atgaggaagc gaatgctggc gcgcgttaca ccattatgcg tccagtcagt
     1201 attgaggcgg gttatcgcta cctgaatttg tcgggtaaag atggtaaccg cgacaacgcc
     1261 gtggctgacg gcccgtatgt tggggttaac gccagtttct gatcccttcc ggcgcggcat
     1321 tctgtcgcgc cattcagttt cttactacgc cttatctccc tttgcgttat agtgattcga
     1381 taacaaaagc aggagataac catgttaaaa gtggaaatgt tatccaccgg ggatgaagtg
     1441 ttacacgggc aaatcgttga cactaacgct gcctggctgg ccgatttttt ctttcatcag
     1501 gggctgccat tatctcgcct caatacggtg ggggataacc ttgatgactt agtcaccatt
     1561 cttcgcgaac gtagtcagca cgccgatgtg ctgatcgtta acggcgggct gggaccgacc
     1621 agcgatgatt taagcgcact cgccgctgcg acagcaaaag gtgaaggcct ggtgctgcat
     1681 gaagcctggc tcaaagagat ggaacgctat ttccacgaac gtggacgagt aatggcaccg
     1741 agcaaccgta aacaagcgga gctgcctgcc agtgctgaat ttatcaataa cccggtaggc
     1801 accgcctgtg gttttgccgt gcagcttaat cgttgcctga tgttctttac tcccggcgta
     1861 ccgtcagaat ttaaggtgat ggtcgagcac gaaatcctgc cgcgcctgcg cgagcgtttt
     1921 tctttaccac agccgccggt ttgtctgcgt ttaactacct ttggtcgttc ggaaagcgat
     1981 ctggcacaaa gcctggacac tctacaactg ccgccgggcg taacaatggg ctatcgctct
     2041 tcaatgccga ttatcgaact gaaactcacc ggaccggcaa gcgagcaaca ggcgatggaa
     2101 aaactgtggc tggacgttaa acgtgttgcc ggacagagcg tgattttcga aggcaccgaa
     2161 ggactgcccg tgcagatcag tcgcgaattg caaaaccgcc agttcagcct gacgttgagc
     2221 gagtaattca ccggtggttt attggctttg caactttctc gcgcaggtgc tccattgctg
     2281 gcgtgtgaag tggttccttc acaggaagaa aacctggcgc aaactgcgca ctggattaca
     2341 gaacggcggg ccaaccattt tgccgggctg gcactggctg tttcgggttt cgagaacgaa
     2401 catctcaact ttgcgctagc cacaccagac ggcactttcg ctctgcgtgt gcgtttcagc
     2461 actacgcgct acagcctggc tatccgtcag gaagtgtgcg caatgatggc actgaatatg
     2521 ctgcgccgtt ggttaaacgg ccaggatatc gccagtgagc atggctggat tgaggttatt
     2581 gagtccatga ccttatctgt ctgattccgc cactctgtgc cggtttactg caccggcaca
     2641 ttccccctcc ggcaaaactt gtccaacctg ttgcactcaa taagaaaaaa tccgtgcact
     2701 gattcacaaa tttgtgcgta atttctccag tccgctggac gaggagcggg atttgatgcg
     2761 cttcacaatt ttactccccc tgagcaacga gactgattcc agtatctaag actggagtcc
     2821 agtatgttgg aatcaagcaa agttcccgcc ctgacacggg ctattgatat tctcaatttg
     2881 attgcccgca ttggcccctg tagtgctgcg acgatcattg acacattggg aatccctaaa
     2941 agcacggcct atttgctgct taatgaactc aggcgtcagc gttttcttag ccttgatcac
     3001 caggaaaatt tttgtttgtg gaccaggctg gtggagcttt ctggtcatgc gttaagcaag
     3061 atggatctcc gggaactggc tcgaccgcgt ttgacgcaac tgatggatac caccgggctg
     3121 ttatgtcatc tggggattat tgataacggc agcgcttatt acattttaaa agtggagtca
     3181 tcagccacta tcagcgtgcg ttcccatgaa ggaaaaagcc tttcgcttta tcgctccgga
     3241 ataggtaaat gcctgctttc ctggcaacct gcagcggtac agcaaagtat tatcgaaggg
     3301 ctggtctggg agcaggcgac acccacaacg attactcatc cacagcaact tcacgaagaa
     3361 ctggcgcgta ttcgccgtca gggctggagc tatgacaacg gcgaagatta ccccgatgtc
     3421 cgttgtgtcg ctgcgccggt gtttaacgcc aataacgagc ttaccgctgc gatctcggtg
     3481 gtcggtaccc gcttacaaat caatgaagaa taccgtgatt atctggcggg caagtccatt
     3541 gcctgcgcca gggatatttc acgtctgttg ggatggaaaa gtccctttga cttacaagcc
     3601 tcataacaat ggagaacatc atgaccctac caaaaattaa acaggttcgc gcctggttta
     3661 ctggcggtgc gacagcagaa aaaggcgctg gcggcggtga ttatcacgac cagggggcga
     3721 atcactggat agacgatcat attgccaccc cgatgagtaa ataccgcgat tacgagcagt
     3781 cacgccagtc atttggcatt aacgttcttg gcacgttggt tgttgaagtc gaagcagaaa
     3841 acggccagac cggattcgct gtttcgacag ccggtgaaat gggctgtttt atcgtcgaaa
     3901 aacaccttaa ccgtttcatt gagggtaaat gtgtcagtga tatcaaactg atccacgatc
     3961 aaatgctcaa tgccaccctg tattactccg gctctggtgg cttggtgatg aatacgattt
     4021 cctgtgtcga tctggctctg tgggatctgt tcggcaaagt ggtcgggctt ccggtttata
     4081 aacttttagg cggcgctgtt cgtgatgaga ttcagttcta cgccacaggt gcgcgtccgg
     4141 atctggcaaa agagatgggc tttatcggtg gcaaaatgcc gacgcactgg gggccacatg
     4201 atggcgatgc ggggatccgc aaagatgccg ctatggtcgc ggatatgcgt gaaaaatgcg
     4261 gtgaagattt ctggttaatg ctcgactgct ggatgagtca ggacgtgaac tatgcgacca
     4321 aactagccca cgcttgcgcg ccctataacc tgaaatggat cgaagagtgc ctgccgccac
     4381 agcagtatga aggttatcgc gaactgaaac gcaacgcgcc agtcggaatg atggtcacca
     4441 gcggtgagca ccacggcaca ctgcaatctt ttcgtacgct ttcagaaacc ggtatcgaca
     4501 ttatgcagcc ggatgttggc tggtgcggtg gtttaaccac gctggtggaa attgccgcaa
     4561 tcgccaaatc cagggggcaa ctggtggtgc cgcacggttc gtctgtttac tctcaccatg
     4621 cggtgatcac cttcaccaat acgccattca gcgaattcct gatgaccagc ccggattgtt
     4681 caacgatgcg tccgcagttt gacccgattc tgctcaatga gccggttccg gtgaatggtc
     4741 gtattcataa atcagtgctt gataaacccg gttttggcgt cgaactcaat cgtgactgca
     4801 atttgaaacg cccctacagc cactaatcac tccgggcgtt gctgtgacaa cggtaacgcc
     4861 cacatattct aaggagcttt ttatgagcac cgctttgctt gacgccgtgg tgaagaaaaa
     4921 ccgtgtgcgt ttaattccgt ttatgttggc gctgtatgtg ctggcgtttc tcgaccgttc
     4981 gaatatcggt tttgccaaac agacctacca gattgatacc gggttgagta atgaagctta
     5041 tgcgctggga gcaggcattt tctttgtggt atatgcgttt ctgggggttc cggcgaatct
     5101 tttgatgcgc aaactggggg ccagaacctg gattggtacg acaacactgc tgtggggatt
     5161 tctttcggca gccatggcat gggccgatac tgaagcgaaa tttctgatag ttcgcactct
     5221 gcttggtgct gcggaggccg gatttttccc tggtatgatt tatctcacct cgcaatggtt
     5281 tccgcagcgt aatcgcgcca gcattatggg gctgttctat atgggcgcac cgctggcgtt
     5341 aacactggga tcaccgcttt ccggcgcgct gttggagatg catggattta tggggcatcc
     5401 cggctggttc tggatgtttg tgattgaagg attgttggca gtcggtgctg gggtattcac
     5461 attcttttgg cttgatgaca caccggagca ggcacgtttt ctgagtaaac aagaaaaaac
     5521 gttgcttatc aatcaactgg caagtgaaga acaacagaaa gtgacttctc ggctgagcga
     5581 tgcgctgcgt aatggccgag tctggcaact agcgattatc tacctgacca ttcaggtggc
     5641 ggtttacgga ttaattttct tcctgccgac ccaggttgcg gcattgctgg gaacaaaagt
     5701 gggctttaca gcgtcggtgg tcaccgccat tccgtgggtt gcggccttgt ttgggacctg
     5761 gcttattccg cgctattccg ataaaaccgg cgaacggcgt aatgtcgcag cgctgacatt
     5821 actggcggcg ggcattggta ttggtctgtc cgggctgctt tctccagtaa tggcgatcgt
     5881 agcgctgtgt gttgcagcta tcgggtttat tgccgtgcag ccggtgttct ggacgatgcc
     5941 gacacaactg ctttccggta cggcgctggc tgcggggatt ggttttgtaa acctgtttgg
     6001 tgcagtgggc gggtttattg ccccgatcct gcgcgtgaaa gcagaaacgt tatttgccag
     6061 cgatgcggca ggattactga cactggcagc ggtggcggtc atcggttcgc tgattatttt
     6121 cactctgcgt gtaaatcgta ctgttgcgca gaccgacgtg gcacatcatt aaataggtta
     6181 aggaacacga tgaacgcatt attaaccaat ccctttaaag aacgtttacg caagggcgaa
     6241 gtgcaaattg gtctgtggtt aagctcgact acttcttata tggcagaaat tgccgctact
     6301 tccggttatg actggttgct gattgacggg gagcacgcgc caaacaccat tcaggatctt
     6361 tatcaccagc tacaggcggt agcgccctat gccagccaac ccgtgatccg tccggtggaa
     6421 ggcagtaaat cgctgattaa acaagttctg gatattggcg cgcaaactct attgatcccg
     6481 atggtcgata ctgccgatca ggctcgtcag gtgtcgtctg ccacgcgcta tcctccctac
     6541 ggtgagcgtg gtgttggggc cagtgtggca cgggctgcgc gctggggacg cattgagaat
     6601 tacatggcgc aagtcaacga ttcgctttgt ctgttagtgc aggtggaaag taaaacggca
     6661 ctggataacc tggacgagat cctcgacgtc gaagggattg atggcgtgtt tattggacca
     6721 gcggatcttt ctgcgtcgtt gggctacccg gataacgccg ggcacccgga agtgcagcga
     6781 attattgaaa ccagcattcg gcggatccgt gctgcgggta aagcggctgg ttttctggct
     6841 gtggctcctg atatggcgca gcaatgcctg gcgtggggag cgaactttgt cgctgttggc
     6901 gttgacacga tgctctacag cgatgccctg gatcaacgac tggcgatgtt taaatcaggc
     6961 aaaaatgggc cacgcataaa aggtagttat tgatatcaaa ggcccatggg gatcggctgt
     7021 gggcctgtgt taattagtgg ttattcgctg ccagatcggc ttcgcttagc tgggtggccg
     7081 cgagcacctg gtcacgatca atgccctgtt ccagcatgcg caaagcaatt ttaatggctt
     7141 gttcatgcat accttcctgc cagccaattt gatgcccttc ctgccgtagc cgttcagcaa
     7201 tagtcattaa tctctccttt tgtagtggtg aacgttcggc aatctcctca ataaaacggg
     7261 tgaaacggga ggtatcgccg cattgcagca gataattaaa cagtgtttgt agctggctgt
     7321 cattagtgaa gcctctaacc aaaagcgtgg tgatcctgtc gaccatgccg attaaatcgc
     7381 ggtcgcgaat atgcttttga atcagttcca gcagagctat acgccgatgt tgcatgatct
     7441 catcgtcagg tacgatggtg atatccacca acggaaaagc ttcggtgtac aactgccggg
     7501 caagttgcgg atcgtcaaac tcatccagcc agttaagtga gtacgggtag ggcgatgttt
     7561 cgccatgata aaacagcaat ggcaccacca gcggaactct gtcatagcct ttatccaggt
     7621 gacgctgcat ggcggcagtg gcatagcgca ttagccgaaa agccatattc ttttctgcag
     7681 agctttgatg ttcaatcacg cagtagatat agccgtcacc gtcgctggtt tccacggacc
     7741 acaaaacatc cgagtagtaa gcgcgtaaac ttttttcaat aaaactagtg ggttccaggc
     7801 gtaaggtttg caggttgcaa agcttgcgca gtggttctgg taaatgtatt tcgagaaaat
     7861 cccgtgcggt ttcgggtgtg aacataaagg ttttaaatac cgcatcatgc ggggaggagg
     7921 ttgttgattc ggtcatggtt gtccgtcacc tgatatttat gatgacgcga cattacggtt
     7981 atcctaggcc tttgacatct gccagtttca gcctttgcga gacgttttca gaggaatttt
     8041 cactgcgttg caacgcatac attgggcacg gaatcgtgta cgcaaaaatg cccggtaacc
     8101 acatgcttac cgggcatcag aaaggagttt aagccagcgc ctgggccagt agcgtaatcg
     8161 gatgttcgca gcgaagactt gtggacatct caatctgcca tttacaggtt tcgcagtcgg
     8221 tgaccaccag atctgcgccg ctttcttcta tctggcggaa cagtggtgcg ccgatggctt
     8281 gtgaggtggg gtagttctct tttttgaaac cgtaagtacc cgcaataccg cagcactggg
     8341 aatccagcac cgttaactca agccccggga ttttacgcaa cagctccagg gtgtagagcg
     8401 tccagcccat tttttccata tggcacggag tgtgataaac cactttcagc ggcagcggtt
     8461 tcagcggtaa cgttttgcct tcgtccagct tgcgccacag ccagcgggtt gccagttcga
     8521 tatgatcgcg caagcctttg ttgtcgacat tcagcacttc cgggtattcg tcgcgcaggg
     8581 caaatgtaca ggttgaggag gtggcaatca ccggaatgcc ttttactccc acagcttcgc
     8641 ggatcgactc tacattcgta attgcctgtt tgcgtgcttt atcggtaaag ccgttggcga
     8701 ttagcggtac gccgcagcat ttttctttgc tgagcagttg tacaccggta cccattgcgt
     8761 tgagcacttt aattaaatct ttacctaact gcggatggtt gtagttaacg aagcagccgt
     8821 gaaagaaagc gacctggtct ttatattgtg cttgctgagc cgctatgctg cgataccagc
     8881 gacggaacgt gccgaaggag tatttcggta gcgtgcgacg atgatcgatt tttaacgccg
     8941 catcaagcag ctgccgcacc ggtttcagcg aggtagcggt gttgacgatt ggtgcgaacg
     9001 gcgtggaaac gctacccatc aggtcggtat gactcaacac aaaattacgc agcgacgggc
     9061 gcgtggtgtc atattttgcc cgcgcgcgct ggataatatc gccaatcttc acatcggacg
     9121 ggcaggcgac ttcacaacgt ttgcagttga tgcaatattt cagcgcctcg tcatacagtg
     9181 cgccatcttt caaacgcaga cgctcgccat ccggcccggc ttgttttggc cctggataac
     9241 cgggattcac ccggctcacc gggcaggcgg tggtgcagac ggtgcactta atgcagtttt
     9301 cgaagctggt gtcgttcatt gttggcctcc tgcgcgttgg gcaatctgtt gagcggcatg
     9361 taaagcactg acggcacaaa caccgccgcc gcatccctgg gcgatgggat caaatccgcc
     9421 cagcaccgaa ccgatggcaa acaggttctc aatggtttgc cctgcctgcg acgggcgtag
     9481 cgtctcatca gtggttacac cgaactgctg ccacggttgc ggcgcaaaaa aatcgccctt
     9541 ataccattca ccccgcgtgg cggtttgtag cacatcaagg ccgagaatcg gctcgcgaat
     9601 gccgttacgt tccgctacca gtccgccact aaagaaactg ccgctggcga gaaccgcgaa
     9661 atgtggacgt agcggaatat cggcgtgatt gcgggtccag atttcattca ctacgccatt
     9721 tttacaggtc acttttttca cttcatcgcc cggcatccac acgccaccct ggcgcacaaa
     9781 ctggcgctgt aactggtttt gcagacgaat gcccagcacg gaaggcggca gcgttggcaa
     9841 aagcatcagt gaacaaagta gtttttcatt caaccaacgc cacagtttgt catcggctag
     9901 gccgaagcag gcaggcatca ggatcatttc gcaggtattg gcgacaggaa taagcgcatc
     9961 aagtaacagc ggccagtttt cttcattatc aaggaaacgg gcgatattca cagcgcgaaa
    10021 ttcggtggcg ttattgcgca ggacatccag ttccggcagc tctatttctg cggtttcaac
    10081 cgaaagatcc agttcgtgca acgaagccgc cgcaagatgc gcctgaaaat ccatcaggcc
    10141 gcttatcccg accacacata ttttcttcgc gggcaacggc cagacgggga cttctggcga
    10201 acttagccag gtagagcgca gagtgccgag cggcgtaatc cgctggtgag ccagttctac
    10261 gctgccctgc aattgcgcac cgctttcagc gattaatgcc tgcgcctggc aagcgagatc
    10321 gagcacgcgt tgtggcccga gaagagagta aggatgtgca ggtgcctgct gacgcaaaga
    10381 ttccagtcca ctgtgaatgt ctgccacggg ttgaccatct ggcagatggc tcagcaaatc
    10441 cagcgaaccg gatgagaaat gcaacgcgct ttgaccacgc gtgacaatgg cacagcgcag
    10501 gccgtgtttt tgcagttgca ggccacagag taatccggcg aggccgccgc ccataatgac
    10561 agtatcaaag cgcatctttc tgctccttct ccagaccaca cagtccctga taaacccagc
    10621 gggtaaattc gctttcgcgc agtgcgtctc cccaggcgat gggttgcacg cctttccagc
    10681 gttcgttaag gaaggtggaa agttgctcga tagattgcgc ggacgtcgtg acgttaaacc
    10741 gttgcagcag tccggcagcg cggcaggcgc agagttcgcc ctggcaggtg cccatcccca
    10801 cacgggtacg acggcgtaaa tccagcaggc tattaacgtt taaattttct accgcgtact
    10861 gcacttcacc cgcagttacc gcttcgcact cacataccag gctacggtgc agacggcctt
    10921 cgctcagcca ggcaggcgtg cgatcgccat gacgataaac cgcagaaccg cgcagcgggg
    10981 caggcaggga gatgacttta cgcaaggtaa cttcagcggg ttcttgtgaa ccaggcagtg
    11041 ccagatcggc agtcgtacag gggcgcgtgt tgcccagttt gcggcatacc gcgtcggtag
    11101 cccattcagc catcagccga taggtcatca gtttgccacc ggtgatggtg ataaatccgt
    11161 ccagaccatc gcgttcagca tggtcgagca gcacgatgcc acggctgacg ttacgtccgc
    11221 tcggatcgtc atcgctggca accagcgggc gcacgccaga ataggcccgc aaaatgcgcg
    11281 ttttcgccat cacgggggcc agtttttccc cttcacgcag cagaatatca acctcttctg
    11341 ccgtcactcg attatcgtca atctcgttgt aatcaatacg taaagaggtg gtaccaatca
    11401 gcgaaatggt atcgccaggc accagaatat cggcgtcgga aggtttacgg cagcggttga
    11461 tcacatgctg gttaatgcgg tgatccatga tcagcagcga tcctttcgcc gggaacatgc
    11521 gaatgcgcag atcggcatat tcggcaatgt gttgccccca gatcccagcg gcattaacca
    11581 cgacaggtgc atgaagggcc tgagtttcgc cggtgagatg gttacgtaca cgaacaccgc
    11641 acaccgtcgc gccttcacga atcagccccg tgacttcatg agcggtaagg ataacggcac
    11701 cgtgttcttt ggcatccagc atgtttgctg cggtcagacg aaatggatca acggtgccat
    11761 ccggaacttt caccgcgcca atcagtgccg ggttaacggc aggttcgata atgcgcgctt
    11821 gctgcgggtc tatagcttct gcgctgatcc ctgcttcttc gcaggcgcga ataaaagtgg
    11881 cctggaatga gaggtcatct tccggcaggg tgataaacag gccgttggtt ggttcaacgc
    11941 agtgacgtgc aatgcgtttc aggatctggt tttcactaat gcattcgcgg gccgattccg
    12001 catcggttac cgcatagcgc gcaccgctgt gcagcaggcc gtggttacgc ccggtggcac
    12061 cggttgcgat gtcgtggcgc tcaaccaaaa tcacgcgcag cccgcgcagg gcacagtcgc
    12121 gggcaatccc ggctcccgtt gcgccgccgc caatgataat cacgtcactt gattgcgagt
    12181 cgcgagtttt cattgttatc cctctgaagt tcgtttttta ccatttagcc atagtaaaaa
    12241 catgaattgt ttgatttcgc gcatgttcgc tcataattcg aaagtgaaac gtgatttcat
    12301 gcgtcatttt gaacattttg taaatcttat ttaataatgt gtgcggcaat tcacatttaa
    12361 tttatgaatg ttttcttaac atcgcggcaa ctcaagaaac ggcaggttct ctcactgaat
    12421 caggctgtta atcataaata agaccacggg ccacggaggc tatcaatgtt gagtattttt
    12481 aaaccagcgc cacacaaagc gcgcttacct gctgcggaga tcgatccgac ttatcgtcga
    12541 ttgcgctggc aaattttctt ggggatattc tttggctatg cggcttacta tttggttcgt
    12601 aagaactttg cgcttgctat gccttatctg gtcgagcagg gattctctcg cggtgattta
    12661 ggtttcgcgc tttcggggat ctcgatcgct tatggatttt cgaaattcat aatgggttcg
    12721 gtatcagatc gctcgaatcc gcgcgttttc ctccccgcag gtttgattct ggcggcggca
    12781 gtgatgttgt ttatgggctt tgtgccatgg gcgacgtcga gcattgcggt gatgtttgta
    12841 cttttgttcc tctgcggttg gttccagggg atggggtggc cgccgtgtgg tcgtactatg
    12901 gtgcactggt ggtcgcagaa agaacgtggc ggcattgtgt cagtgtggaa ctgtgcgcac
    12961 aacgttggtg gtggtattcc gccgctgctg ttcctgctgg ggatggcctg gttcaatgac
    13021 tggcatgcgg cgctctatat gcctgctttc tgcgccattc tggtggcatt attcgccttt
    13081 gcgatgatgc gcgatacccc gcaatcctgt ggcttgccgc cgatcgaaga gtacaaaaat
    13141 gattatccgg acgactataa cgaaaaagcg gaacaggagc tgacggcgaa gcaaatcttc
    13201 atgcagtacg tactgccgaa caaactgctg tggtatatcg ccatcgccaa cgtgttcgtt
    13261 tatctgctgc gttacggcat cctcgactgg tcaccgactt atctgaaaga ggttaagcat
    13321 ttcgcgctgg ataaatcctc ctgggcctac ttcctttatg aatatgcagg tattccgggc
    13381 actctgctgt gcggctggat gtcggataaa gtcttccgtg gcaaccgtgg ggcaaccggc
    13441 gttttcttta tgacactggt gaccatcgcg actatcgttt actggatgaa cccggcaggt
    13501 aacccaaccg tcgatatgat ttgtatgatt gttatcggct tcctgatcta cggtcctgtg
    13561 atgctgatcg gtctgcatgc gctggaactg gcaccgaaaa aagcggcagg tacggcagcg
    13621 ggctttaccg ggctgtttgg ttacctgggc ggttcggtgg cggcgagcgc gattgttggc
    13681 tacaccgtgg acttcttcgg ctgggatggc ggctttatgg taatgattgg cggcagcatt
    13741 ctggcggtta tcttgttgat tgttgtgatg attggcgaaa aacgtcgcca tgaacaatta
    13801 ctacaaaaac gcaacggagg ctaatggcat gaaattgacg ctgaaaaacc ttagcatggc
    13861 gatcatgatg agcactatag tcatgggaag cagtgcaatg gcggcggaca gcaacgaaaa
    13921 aatagtcatc gcccatcgcg gtgccagtgg atatttgccg gagcatacgc tgccagcaaa
    13981 agcgatggcg tatgcgcagg gagcggatta tctggaacag gatttggtga tgaccaaaga
    14041 cgaccatctg gttgttctgc atgaccatta tctcgatcgt gttactgatg ttgccgatcg
    14101 tttcccggat cgggcgcgca aagacggtcg ttactacgcg atagatttca cgctggatga
    14161 aattaagtcg ttgaaattta ccgaaggttt cgatattgaa aacggtaaaa aagtgcagac
    14221 ttatccgggg cgtttcccaa tgggtaagtc cgacttccgg gtgcacacct ttgaagaaga
    14281 gattgaattt gttcaggggt taaatcactc taccgggaaa aatatcggta tttatccaga
    14341 aatcaaagcg ccgtggttcc atcatcagga agggaaggat attgcggcaa aaacgctgga
    14401 agtgctgaag aaatatggtt acaccggtaa agacgataaa gtttatttgc aatgttttga
    14461 tgctgatgag ctgaagcgta ttaagaatga gctggaaccc aaaatgggca tggagctcaa
    14521 tctggtacag ctgattgcct ataccgactg gaatgaaacg cagcagaaac agccggatgg
    14581 aagctgggtt aattacaact acgactggat gtttaagccg ggtgccatga aacaggtggc
    14641 ggaatatgca gatggtattg gtccggatta ccatatgttg attgaggaga catcgcagcc
    14701 gggtaatatc aaactcactg gcatggtgca agatgctcag cagaataaac tggtagtgca
    14761 tccttatacc gtgcggtcag ataaactgcc tgaatacact cctgatgtga atcagttata
    14821 tgatgctctg tataacaaag cgggtgtaaa tgggctgttt actgatttcc ctgataaggc
    14881 agtaaaattt cttaataaag agtaatgtta ctgcaggatg gcgttcatgc gccatcctgt
    14941 ctcatatcaa atttttccaa tcgccactaa ttgttccatg cacatttgta gtaaaaacag
    15001 tggactgcct tctaccggct tttctttagc cagcaacgaa atctgtcgat agaaagttgg
    15061 ttcgagagga acggaacaca attcacctgc aatgcttttc agcgttaact ctggttgtaa
    15121 ggcgatgcct aatccctgtc gaataaaatt catcgctgta tccgcctgat taaattcaca
    15181 ttttatctgc tgggcgcact attagtggta gtggctggtg gaatctatgc gctgcaaatg
    15241 aagggtaaaa gcggtgtcaa gctagtagtg gcaaaagaaa ttcattaata cgacacgttt
    15301 cattaagatt ttcctcaggt aaccacctat agtcattgtc gttaataaaa acgacaggcg
    15361 atagggtatg gcagtttcag caaagtacga cgaatttaat cactggtggg caacagaggg
    15421 cgactgggtt gaagagccta actatcgccg taatggtatg agcggggtgc aatgcgtcga
    15481 gcgcaacggc aaaaagctgt atgtaaagcg catgacgcat catctgtttc attctgtacg
    15541 ttatccgttc ggccgaccaa cgattgtccg tgaggttgcg gtaattaaat aactggaacg
    15601 ggccggtgtc atcgtgccga agatcgtttt tggtgaagcg gtgaaaattg agggtgaatg
    15661 gcgagcgttg ctggtgactg aagatatggc ggggttcatc agcattgctg actggtatgc
    15721 ccagcatgca gtatcgcctt attctgacga agtacggcaa gccatgttga aagcagtggc
    15781 gctggcgttt aagaaaatgc atagcattaa tcgtcagcat ggctgttgtt atgttcgcca
    15841 tatctatgtg aaaacagaag gtaaggcaga agctggtttt cttgacctgg agaaaagtcg
    15901 tcgccgcttg cgtcgcgata aagcgattaa tcatgacttc cgccagctgg aaaaatatct
    15961 ggagccaatc cccaaagcgg actgggagca ggtgaaagcg tattactacg ccatgtaatc
    16021 gttgtaggcc agataagaca cataagcgtt gtatctggca ctacaaccaa ttcacatctc
    16081 gatttcaata tcgccttttg cccggcaaca acagggcaaa atttcccccg gctgaataaa
    16141 ggctaacggt tcggcaatcc agtcaacttg acctgcaacc aggcgtgtgc gacaggagcc
    16201 gcagtaacct tcgcgacact ggtactcaac cgccacattg tgggattcca gcgctgccag
    16261 aagggaaggg tgttcatcct ggcacagcag ttgtgtgcca gtgatgcgca gggtaacgcg
    16321 ggccatcaga gctggaagtt actcaaatcg tcggtgtcca cttccgagtc aatctgcccg
    16381 accagataag aactgacttc cacttcctgc ggagcaacct gcacgttatc agacaccagc
    16441 caagtgttga tccacgggat cgggttggag cgcgtctgga acggcagatc caaaccgact
    16501 gcctgcatac ggatattggt gatgtattca acgtactggc agagaatgtc tttattcaga
    16561 ccaatcatcg aaccgtcgcg gaacagataa tccgcccagt ctttctcctg ttgagctgcc
    16621 tgaacaaaca ggtcatagca ctcctgctta cactcttcgg caatttccgc catctcagga
    16681 tcgtccgcgc cgctgcgcag cagattcagc atatgctggg tgccggtcag gtgcagggct
    16741 tcgtcgcggg caatcaggcg aataattttg gcgttgcctt ccatcaattc gcgttctgca
    16801 aaggcaaagg aacaagcaaa gctgacgtag aagcggatcg cttccagcgc gttaacgctc
    16861 atcaggcaaa gatacagttt tttcttcagc tcgcgcaggc taacggttac ggttttaccg
    16921 ttaacggtgt gggtgccttc gcccagaagg tgccagtagc tggtcatttc gatcagttca
    16981 tcgtaatagc tggagatccc ttccgcacgt ttctggatct gctcgttggt gacgatatcg
    17041 tcaaacacaa cagacggatc gttaacgata ttacgaatga tatgagtata ggaacgggaa
    17101 tgaatcgttt ctgagaacgc ccaggtttcg acccaggttt ccagttccgg aatagaaata
    17161 agcggcaata gcgccacgtt cggactacga ccctgaatgg aatccagcag cgtctgatat
    17221 ttcaggttgc tgataaaaat gtgtttttcg tgctccggca gcgcctggta atcgatacgg
    17281 tcgcgggaga cgtcaacttc ttccggacgc cagaagaaag agagctgctt ttcgatcagc
    17341 ttttcgaaga tgtcatattt ttgctgatcg tagcgggcca cgttgaccgg ctgaccaaag
    17401 aacatcggtt ctttgagctg atcatttttc gtctgtgaaa aggtggtata tgccatgagt
    17461 gtgtcctgtt gggagtttaa tgccggataa ggcattttac gccgcatcct gtgcctgatg
    17521 cgacgctggc gcgtcttatc aggcctacaa atccgagccg taggccggat aaggcgttca
    17581 cgctgcatcc ggcatctcaa tatcagatct tacatgcgcc gctttcgcag ccatcgtcct
    17641 ggattgacgg taccagatcg tcctgcgcgt cttcagcgcc gtcacgggtg ttctgataat
    17701 acagcgtttt gaccccgaat ttgtaggcgg tgagcaggtc tttcagcaac tgctgcatcg
    17761 gcacttttcc tgacgggaaa cgtgacggat cgtagttggt gttagcagag atcgactgat
    17821 cgataaattt ctgcatgata cctaccagtt gcaggtagcc atcgttaccc ggcatttccc
    17881 acagcagctc ataggcgtcg tgcaggtgct cgtagtccgg caccacctgg cgcaaaatac
    17941 cgtctttcga cgctttgatg ctgacgtaac cgcgcggcgg ttcaataccg ttagtggcgt
    18001 tagagatctg cgaagaggtc tcggacggca tcagggcaga aagcgtggag ttacgcaggc
    18061 cgtgcgtttt gattgattca cgcaatgctt cccagtcgta atgcagcggc tcattagcga
    18121 tggcatccag atctttctta taggtatcga tcggcaggat ccctttcgcg taagtggttt
    18181 cgttaaacca cgggcactcg ccttgctctt tagccagctc attagacgct ttcagcaggt
    18241 aatactgaat cgcttcgaag gttttatgcg tcaggttgtt ggcgctgccg tcggagtagc
    18301 gtttaccgtg cttcgccagg tagtaagcga agttgatcac accaataccc agcgtacgac
    18361 gacccatcgc tccacgtttg gcggccggga tcgggtaatc ctgataatcc agcagcgcgt
    18421 caagtgcacg aaccgccaga attgccagct cttccagttc atccaggtta ttaattgcgc
    18481 ctaggttgaa agcagacagc gtacacagcg cgatttcacc gttctcgtcg ttgacgtcgt
    18541 tcagcggttt ggtcggcagg gctatctcca ggcacaggtt agactgacgc actggcgcga
    18601 tggccggatc aaacgggcta tgggtattac agtggtcaac gttctgaata tagatacgac
    18661 cggtagacgc acgttcctgc atcatcagcg agaacagctc aacggctttc acacgctgct
    18721 tgcggatgct gtcgtctttc tcatatttgg tatacagacg ttcaaactct tcctgatcgg
    18781 cgaagaacgc gtcgtacagc cccggtacgt cggacgggct gaacagggtg atatcttcac
    18841 ctttcagcag acgggtatac atcagtttgt tgatttgtac cccgtagtcc atatgacgca
    18901 cgcggttgcc ttccacacca cggttgtttt tcaacaccag caggctttcc acttccagat
    18961 gccacatcgg gtagaacagc gttgccgcac cgccgcgcac accgccctga gagcaggatt
    19021 tcaccgctgt ctggaaatgt ttgtagaacg gaatgcagcc ggtatggaac gcttcaccac
    19081 cgcgaatcgg gctacccagc gcacgaatac gcccggcgtt gatgccgatc ccggcacgct
    19141 gggaaacgta tttaacaatt gcgctggagg tggcgttgat ggaatccagg ctgtcaccgc
    19201 actcgatcag tacgcaggag ctgaactgac gagtcggggt acgcacgccg gacatgattg
    19261 gcgtcggcag cgaaatttta aatgtggaaa ccgcgtcgta aaaacgcttc acatattgca
    19321 ggcgcgtttc acgcgggtag ttcgagaaca ggcacgcggc aaccagaata taaaggaact
    19381 gggcgctctc atagatttcg ccggtcacgc ggttctgtac cagatatttg ccttccagct
    19441 gcttaacggc agcataagag aaggtcatat cacggtcgtg atcgataaac gtgtccatct
    19501 gcttgaactc ttcttccgtg tagtcttcca gcagatgatt atcgtatttg cccatctcga
    19561 ccattttcac cacgtggtcg tacagcgcag gtggctcaaa ctggccgtag gcttttttac
    19621 gcaggtggaa gatcgccagg cgcgcggcga gatactgata atccggcgca tcacgggaga
    19681 tcaggtctgc ggcagccttg ataatggttt cgtggatgtc agaggtcttg ataccgtcat
    19741 aaaactgaat gtgggagcgc agctcgacct gggaaatcga aacgttatgc agtccttctg
    19801 ccgcccaatc cagaacgcga tggattttgt cgagattgat gcgctctgtg ctaccgtcgc
    19861 gctttgtcac cagcagattc tgattcatgt atgtcgtacc tgtttttgga attctttccg
    19921 caatagtttc atgcagacta cctgtagtac gggaagctgc ttagaacact atatataggg
    19981 ggtatgtttg ggattcactg caagatagtg tgaaaatggc cctcttgcaa gtgcataact
    20041 ttgtggataa ctcaggaagg aaaaagtggc tttcgcgcac cttaggtcag acaaggtgtc
    20101 cgggaaagtc aatgggaaga gaaaaatttg ttaaaaataa ctgttcggcg atttcttgaa
    20161 cggcagaata ggttggataa attgatatag atggtttatt aatctttttg ctaatgattg
    20221 caaaaattga tctaagcacg agtcatcaca taatctgatg tatcagttgt ggtcaatata
    20281 taagcgaatg taagcgattg ttgatgtcga aatggttgtt ttctattcgg ttattgttaa
    20341 atgcgaagcc attttgttaa tttaccttat attataaaaa aattattcat tactttaatt
    20401 tagtttaaat ataactggta tcccttaagg ttattaactt gaattatgac gcactgatat
    20461 tattcatcaa ataataacaa aatagccatt gcatcgggtt ggacaattta caaaagaaag
    20521 ataacccata ttgtataatg cgtttaaata tgccgtctta tataaaatga tggtcagatt
    20581 aatatgcgga tta
//
LOCUS       DAJVUP010000067        20238 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.067, whole genome shotgun sequence.
ACCESSION   DAJVUP010000067 DAJVUP010000000
VERSION     DAJVUP010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20238
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.067"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..4051)
                     /gene="mukB"
                     /locus_tag="OQQ75_002200"
     CDS             complement(<1..4051)
                     /gene="mukB"
                     /locus_tag="OQQ75_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HCS1976517.1"
                     /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM
                     AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV
                     GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM
                     EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR
                     DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR
                     HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS
                     DHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEV
                     DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK
                     ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ
                     RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI
                     ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTS
                     SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG
                     GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLDGLTDCPEDLYLIEGD
                     PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS
                     ERFATLSFDVQKTQRLHQAFSRFIGSHLAVVFESDPEAEIRQLNSRRVELERALSNHE
                     NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ
                     FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY
                     SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT
                     KKELLNDLQRELQDIGVCADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE
                     MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL
                     RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAAYQHLRERIRQDIIR
                     TDDPVEAIEQMEIELSRLTEELTSREQKLVISSRSVANIIRKTIQREQNRIRMLNQGL
                     QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
                     PQIDMGQRTPQTIGEELLDYRNYLEMEVEV"
     gene            complement(4051..4755)
                     /gene="mukE"
                     /locus_tag="OQQ75_002201"
     CDS             complement(4051..4755)
                     /gene="mukE"
                     /locus_tag="OQQ75_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HCS1976518.1"
                     /translation="MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH
                     AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL
                     YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN
                     RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ
                     LNDETEENQPDSGEEE"
     gene            complement(4736..6058)
                     /gene="mukF"
                     /locus_tag="OQQ75_002202"
     CDS             complement(4736..6058)
                     /gene="mukF"
                     /locus_tag="OQQ75_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HCS1976519.1"
                     /translation="MSEFSQTVPELVAWARKNDFSISLQVDRLSFLLAVATLNGERLD
                     GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR
                     LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL
                     KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL
                     QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG
                     YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR
                     DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA
                     RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY"
     gene            complement(6055..6840)
                     /gene="cmoM"
                     /locus_tag="OQQ75_002203"
     CDS             complement(6055..6840)
                     /gene="cmoM"
                     /locus_tag="OQQ75_002203"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-oxyacetic acid(34)
                     methyltransferase CmoM"
                     /protein_id="HCS1976520.1"
                     /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ
                     KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA
                     QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM
                     VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK
                     HQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV"
     gene            6976..7755
                     /gene="elyC"
                     /locus_tag="OQQ75_002204"
     CDS             6976..7755
                     /gene="elyC"
                     /locus_tag="OQQ75_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope biogenesis factor ElyC"
                     /protein_id="HCS1976521.1"
                     /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTAKIFIS
                     IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI
                     NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD
                     LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL
                     NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGPSGEPRQE"
     gene            complement(7732..8625)
                     /locus_tag="OQQ75_002205"
     CDS             complement(7732..8625)
                     /locus_tag="OQQ75_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbJ family phosphotransferase"
                     /protein_id="HCS1976522.1"
                     /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM
                     ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA
                     PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN
                     QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMV
                     GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN
                     TGRFSRRNFDLASKSLLPWLA"
     gene            complement(8779..9525)
                     /gene="kdsB"
                     /locus_tag="OQQ75_002206"
     CDS             complement(8779..9525)
                     /gene="kdsB"
                     /locus_tag="OQQ75_002206"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HCS1976523.1"
                     /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER
                     IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP
                     MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI
                     PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYG
                     EKIHVAVAQEVPGTGVDTPEDLERVRAEMR"
     gene            complement(9522..9704)
                     /gene="ycaR"
                     /locus_tag="OQQ75_002207"
     CDS             complement(9522..9704)
                     /gene="ycaR"
                     /locus_tag="OQQ75_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YcaR"
                     /protein_id="HCS1976524.1"
                     /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV
                     LLETEARVLTADESKS"
     gene            complement(9756..10988)
                     /locus_tag="OQQ75_002208"
     CDS             complement(9756..10988)
                     /locus_tag="OQQ75_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaQ family DNA glycosylase"
                     /protein_id="HCS1976525.1"
                     /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLL
                     QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH
                     RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH
                     KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS
                     LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHADLLPLLERAL
                     AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ
                     LVGRMDAKMHRQTGILEVISLWLQEGIKPTTMLQKGLRQVITDFASWQQATRVTLGRC
                     PQGLFTDCRTGWEIDPVA"
     gene            complement(11025..12011)
                     /gene="lpxK"
                     /locus_tag="OQQ75_002209"
     CDS             complement(11025..12011)
                     /gene="lpxK"
                     /locus_tag="OQQ75_002209"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HCS1976526.1"
                     /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA
                     PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGSKAESYPLLLSADTT
                     TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE
                     IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL
                     RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV
                     SAEQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTSLASGN"
     gene            complement(12008..13756)
                     /gene="msbA"
                     /locus_tag="OQQ75_002210"
     CDS             complement(12008..13756)
                     /gene="msbA"
                     /locus_tag="OQQ75_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HCS1976527.1"
                     /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM
                     LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR
                     RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM
                     FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL
                     IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM
                     DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV
                     IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF
                     YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI
                     EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT
                     SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL
                     EHRGVYAQLHKMQFGQ"
     gene            complement(13793..16065)
                     /locus_tag="OQQ75_002211"
                     /pseudo
     CDS             complement(13793..16065)
                     /locus_tag="OQQ75_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309023.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC family protein"
     gene            complement(16272..16556)
                     /gene="ihfB"
                     /locus_tag="OQQ75_002212"
     CDS             complement(16272..16556)
                     /gene="ihfB"
                     /locus_tag="OQQ75_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HCS1976528.1"
                     /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE
                     IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG"
     gene            complement(16716..18389)
                     /gene="rpsA"
                     /locus_tag="OQQ75_002213"
     CDS             complement(16716..18389)
                     /gene="rpsA"
                     /locus_tag="OQQ75_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HCS1976529.1"
                     /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS
                     ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY
                     EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD
                     QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE
                     GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD
                     IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK
                     GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV
                     DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE"
     gene            complement(18500..19183)
                     /gene="cmk"
                     /locus_tag="OQQ75_002214"
     CDS             complement(18500..19183)
                     /gene="cmk"
                     /locus_tag="OQQ75_002214"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HCS1976530.1"
                     /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA
                     LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ
                     VATFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML
                     QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ
                     YARQKLALA"
     gene            complement(19356..20119)
                     /gene="ycaL"
                     /locus_tag="OQQ75_002215"
                     /pseudo
     CDS             complement(19356..20119)
                     /gene="ycaL"
                     /locus_tag="OQQ75_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706828.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase YcaL"
BASE COUNT         4868 a         5593 c         4911 g         4866 t
ORIGIN      
        1 taacctcaac ttccatttcc agatagttgc ggtaatccag cagttcttcg ccaatggtct
       61 gcggcgtgcg ctgccccata tcaatctgcg gattaagacg ctgatacaat ttcgccaacg
      121 cttccgagaa ggtcagacgg ttgctgttaa acagatcctg atgctgctcg tgctgttcag
      181 agagcacatc cagcagcatg gcgtgcgttt cacgcacgtt cacgttgagg cgcacgctgt
      241 tcacctgacc aaacgatacg ttctgcaacc cctggttgag catacggata cggttctgct
      301 cgcgctgaat ggttttgcga atgatgttcg ccacgctgcg ggaactgatc accagtttct
      361 gttcacggga ggttaattct tcggtcagac ggctaagttc gatctccatc tgttcgatag
      421 cttccaccgg atcatcggta cgaataatat cctgacgaat acgttcacgc agatgctgat
      481 aagccgccac gaagaactga attttacgct ccggacgttt cggatcttcc gacatgcgca
      541 gcacgtcgcg cagatgttcg ttatccgcca ccgccagacg cagcgcaccc aatgccttat
      601 ccgacataga gcgcaaatca tcagcggaga gataagccag ctcacgacgg tgtaagcggc
      661 gctcaacgcc gttatctttc accatgcgca tcaccgcaca ccagcccgct ttggcggtca
      721 ctacctgctc gcgcatctca aagtaatccc gctccagctt gcgcagtttg cgggtcaggt
      781 tgtccatctc cgcttcgcag aaggtaagcg ctttttccag ttgattgcgg cgtgaacggt
      841 tattgctcag ttgcgcatgc agctcgtcac ggcgaatacg cgcccgctct tctgccccgc
      901 tatcagcaca cacgccgata tcctgcaatt cacgttgcag atcgttgagt agctcttttt
      961 tggtgtcgta agaacttttc agcgaagcca gcacctggtt gtactgactc aactgcgctg
     1021 cgtgaccgcg caacgcttcg cgagcacggg tacgctccgc ttccgcctgt tccagacgtt
     1081 cacgcagttt ttcgttgaga tcgctgttac cgctaagcat ttctgccgag tcagagtagc
     1141 taaagtgcgc acgacgctgc accacttccg tcagggcaaa cgcctgctga cgggcatcgc
     1201 gctgcatctg ttgagagtac gcgtaatctt cttttaactg ttcgaactgt tccgggtcgc
     1261 tctgcaatac cgaaacgatc ggttccagtt tcgccagttg attgccaaac tgctgaacaa
     1321 aacgcgcggc ttcctgggct tcatccagac gttcgcggat ttcatcgacg cgatccgcca
     1381 ggctatcatc agccaacagg ttgagacgcg gcagaatgcg gttcagcgcc gtaacgccct
     1441 ctttcgcctg ctcaaactga atacgctgct gctggttatc attttcatga ttacttaacg
     1501 cccgctccag ttcgacgcga cggctgttca gttgacggat ttctgcttcc gggtcagact
     1561 caaacacaac cgccagatga ctgccgataa agcggctgaa cgcctgatgc agacgctgag
     1621 ttttctgtac atcaaaggag agcgtggcga agcgttcgga aagcacttca cgctcggcat
     1681 ggaggctttc aatacggctt tcacgcgcag cacgaccaaa cagcggcact tccgggaaac
     1741 gtgaataacg ccactgacga tcggcgattt tcaccactac cgctttttcc agctcatcaa
     1801 cgctgaacac gctgtcatcg aatgactgcg gatctccttc gatcagatag agatcttccg
     1861 ggcaatcggt caagccatct aggtgttcag ttacctgtga cagatctggc accacgatgg
     1921 cgtggcgtga cgggccatac agcgctgaga agtacggcgc atcttccagg ctaacgtcgt
     1981 cataaatttc tgacagcagc acaccaccaa aacgctccgc cagcgcgttc agacgctgat
     2041 cttcagagcc gccaggctgg cttaaacgtt cgatctcttc atcgacggcg tttttgcgcg
     2101 cgcccacttc atcgcgttca acaatcgcct ctcgctcacg ctccagcaac tgttgcagat
     2161 attcggtgac gtcctggctg gaggtaaact cttcgccgca ctgttcgctc aactggttga
     2221 gactgttttg cgctgccagc caaaccggcg cacgctgcat caaactctga atgcgagact
     2281 gcagctgttc ctgctcctgg cgcagtgcca tgcgctcttc acgggcgtta gacacgctat
     2341 cggaaagaga ggcaatgcgt gcttccagtt cctgatgcag ggcttccagt tcgtcgatat
     2401 caaaattctt gccctgacgt ttgcagaaat ctgccagcag acgctcagct tcttgctgct
     2461 cgcgtagacg ctgttccagt tcgcttaatc gcatccgcag cggctgaacc tgctctgcca
     2521 ggtgacgctg atcgacccct tcgcgcaata gttcgcgagc gacatcccac gcctcgttac
     2581 gcgccagtgg gccgttgatt gccaccacca gctgataagc ctgctcaaac tggctgtgcg
     2641 cggtttgcgc catgctcatt ttctgctcaa gagagagcat tttttcagtc gcttccagct
     2701 ctttcgcctg gaaggtttcc agccattcgg cggcgctgtc ggcggttaag tccggcagat
     2761 ggcacagttc tttggcacga ttaagcgcag caatcgcctg gttatactgg atcgcgcgcg
     2821 tttgctggac gtccagcgcc tgctggtagt cagcaagctg gcttttcagc tcgtccactt
     2881 ccagttcggc agcttccgcg cgagcctcgt tctcttcctg gcgttcgatg gcttctgcca
     2941 ccacttcgtt ttgctcttcc agacggatct gcagctcatc gagatccgct tcgtagcgtt
     3001 cgatcttctc ctgctgacgc agtgcggttt gcaccaggtt caggtgatcg ctggccgcct
     3061 gataatccgc ttccagatcg ccttcggcac cgttgtgctc tgccagctca cgcgccatat
     3121 cgacgtgttt gtactgctca gccgccagtt gctgacgcga agtatgtaac tcgcgacgaa
     3181 actccagggc tttgtcgaga tggacacggc gctcgttggc gtgacgcatg tagtccgccg
     3241 ccacgtagtt ggtagcttcg ctgatcagat gcttaaacag gtcacggtcc gactgggtga
     3301 cacgaatcgc ttccagcgtc atgcggtttt cacgcagcgc cgcttccatg tcctggaacg
     3361 ctttacgcac gccgctgttt tccggcaaca gatagtcgcg cagagaacgg gtaatggcac
     3421 tggagatccc gccatacagc gaagcttcga tcagacgata gaatttgcta cggtcagatg
     3481 cggagcgcag acgacgcgcg atgatgccca gatcgaacat cagcgagtgg taatcggtaa
     3541 tggagttgaa ctgtttaaac tgcacgcctt ccatcgcctc gagcttgtct ttcagctcgt
     3601 taagcggcag cacgcgcgcc tggcgttcgt tcagggtttc ggtcaccagc tgtgtcggct
     3661 gcaccgacat cggcagtccc tgaatggcaa atggtttgat atccacttta cgatcgcgtc
     3721 cggcaacctg ttgcagacgc acaccgacca ccacgcgctg gtggcgcgag ttaatggtgt
     3781 cgagcatcga ataacagaca cccgctttca gcttaccgtg cagaccttta tcgcgcgaac
     3841 cgctggtggc cccggcttcc gtagtgttac ggaaatgcag cagggtcagg tcggggatca
     3901 gcgccgtaac gaacgccgcc atggtggtgg atttacccgc cccgttaccg ccagaaagcg
     3961 tcgtgaccag ctcgtcaagg tcaaaagttc gggcaaaaaa gccgttccag ttaatcagcg
     4021 tcagtgagcg aaatttaccg cgttcaatca ttattcttcc tctccgctat ctggctgatt
     4081 ctcttcggtt tcatcgttga gttgcagatg attttcaatc ggcattgctt cgccatcacg
     4141 aatcaggcga cgctgtgctt cacggggatc gtcgccagca cgcacatcgg ctccgaagcg
     4201 gaacaccgat tcggtaatgc gaaacttgct gctgtcgtgg cccataaacc acaccatgcc
     4261 taaacgacgc agacggttga gcgaagaacg tactttctcc tgcaacttct gacggtcaac
     4321 gtctgaaccg gttgaacggt tgttcaccag tttcagcagt tttgcttcat cggccagggt
     4381 gagcagttcg tcgtacagtt cctgctgggt gaaaatcccc tcattcgcca gccgttccgg
     4441 gctgagatag agataacaga ggattttccc gaccatcata tccagttccg acaagacgga
     4501 acgcgggata agagtggtgg aacgtgggcg taaatagaag aacccttccg gtgcgcgaat
     4561 aagctcaacg ttataacgcg cgtaaaactc ttccagatat tcctgaaaat ccatcaggaa
     4621 tgcatgatta tccagttcgt cgaggccaat atggcggcct gaacgtaagg cgctgtccag
     4681 cgccggaaat aacggattcg ccagcgcctg cgccagctta accggcatca cttgttcaat
     4741 atttgtcgat gacatgcgcc tgtaccttgg ctccgtaatc attaatcggc tgccatttcg
     4801 ctggcagtcc ggtgaaatct gcttgcgcta cgccaagacg taccgcctga tcaataacaa
     4861 tacgcgcaac gtcaaagtga cgtgcacgcg gatactgtga cagatattcg cgtaccacca
     4921 gaccaagatc cagcggcact tgtctggttt tgtacacggc aagttgttct tcgatgatcg
     4981 ccgccagctg ttcgcggatc tcgttaaact cttcgtattc cagatcctca ggaagttccc
     5041 cagtcacttc ttcatcgcgc agtgccatct cttcgtcacg catatccagc agacgatcgg
     5101 cattggcata agttagcgcc cacggctcat caaaataggt ttgtaccgac tgacgtaacc
     5161 gctgagcaaa gacgcggttt ttatccatat cgatcgcggt acgaataaat ttgtgtacgt
     5221 ggcggtcgta gccaatccac aagtcgatgg attgctggcc ccaactgata atacgatcga
     5281 gtttgctctg cagatcgaac accagacgat cgacgaaatg cagatcgtca tgggtcatcg
     5341 tcgcatcctg aatgcgcaac agattagcct gcaatttgtc gcctgccgct tccagcgtat
     5401 cctgcaattc acgcagcgtt ccggaagttt ccgaaagcaa caattcacag ctggaaatcg
     5461 ccgcccgcca gtctttgttc agcaactggg cgatatcgtc cttcacctgc tgctgctgtt
     5521 cgtccatcag acgttgcgtc aggtcgatac tgtcgaaaat ttctgctacc gaatatttca
     5581 gtggcgcata gacattacgg tgccagtgaa attcatcacc gccctcttcg gcggcatctg
     5641 ctgcgcgttt gagctcaccc gccacaatcg acaactgcat agaaagacgc agcgtagaaa
     5701 actcgcgctg acggatgtag tagtcagtaa tgccgatgcc gagcggcgtc agacggtaaa
     5761 ttgcgttccc ttccgcctgc tcgctggtaa agcggttcag cagacgttga cgcaccatgt
     5821 cgttgatcgc gttattggcg cgcacgccga tggtttcgct ggtttgctca aacgcatcac
     5881 tcacatggcg gaatgcatcc accagctcgc cttcactcat ctcaccatcc agacgctcgc
     5941 cgttcagcgt ggcaaccgcc agcagaaaag agagtcggtc tacctgcagc gagatggaga
     6001 agtcattttt tctggcccag gcaaccagtt cggggactgt ctgggaaaat tcactcatac
     6061 tttatccttg ctctgcggtt tgcgcgcggt gacatgaata taacgcccca gggtaatata
     6121 cggttcctga cggcaataac gcgtttctaa ttcaagtaat gcttcatagc agtcgcgctg
     6181 ctggtgcttc tcgcgcagat aatcatgaaa cacgcgaacg cctgtcttac ccataatttg
     6241 ccaaccagct tcttccagcc acagataaac ctgcgccggg tcgcgtggat aatctggcga
     6301 aagcgtccgt tttttctttt tcggcattcc cgcctgcacg taatcaaaat tcccggcgac
     6361 catgttatgc atcaacaaac catgcgcatt gtagaacatt aacgacaaca cgccgcctgg
     6421 acgcaacact gaccacaggg tctgcaatac actgcgggga tcggccaccc actcgagcac
     6481 cgcatggaac aatatcagat caacgggcgt ttccaaatgc gaagcaacat cctgagcggc
     6541 gcaatgtata aattgcatgt tgtcgctcac accttttgct tctgccgcct gttttgcgcg
     6601 gtcgatcatc tgcgcagaaa gatcgcataa aatgacctga tgcccacgct cggccatttt
     6661 gattgcggtc tgcccttctc caccgccagc atccagcaca cgcagttttt gcgggcccat
     6721 ttccgccagc acgcgatcga gatcctgcca cagaatagcc tgtcgaagct gccctttggt
     6781 ggtgccgtaa atgttgcggg aaaacttttc cgcaatatca tcaaaattgc gatcctgcat
     6841 tgctttctcc accggttggc taagacgttt tctgataaag acgctatttt gtcacagcca
     6901 cggcgagaat gaacccgtct ggtgtaatat cgctggcgat cccttgctat atggttaaaa
     6961 aaggaaccag aaaggatgct ttttacactg aaaaaagtga ttggcaatat gttgctgcca
     7021 cttccgctga tgttgttaat tattggcgct ggcctggcgc tgctgtggtt tagccgtttt
     7081 caaaaaaccg cgaagatttt tattagcatt gggtggctgg cactcttgtt attgagtttg
     7141 caaccggtag ccgaccgcct gctgcgtccc atcgaaagca cctatccgac atggaataat
     7201 tcgcaaaaag tggactatat cgtggtgctc ggaggtggtt atacctggaa cccgcagtgg
     7261 gcaccgagct ctaatttaat caataacagt ctgccacgcc tgaatgaagg tattcgctta
     7321 tggcgcgaaa atccgggatc aaaactgatc ttcacgggag gcgtagcaaa aaccaatacg
     7381 gtgagtacag cggaagtagg tgccagagtt gcgcaatcgc tgggcgtgcc gcgcgagcaa
     7441 attatcaccc tggatttgcc aaaagatacc gaagaagaag ctgcggcagt gaaacaggcg
     7501 attggtgacg cccctttcct gctggtgacc tccgcatcac atctgccgcg ggcgatgatc
     7561 ttttttcagc aggaagggtt aaatcctcta ccagccccgg cgaatcagtt ggccatcgac
     7621 tcgccgctta atccgtggga acgggcaatc ccttctccgg tctggctgat gcatagcgat
     7681 cgtgttggct atgaaacgct tggccgcatc tggcagtggc tgaaaggtcc gtcaggcgag
     7741 ccacggcaag agtgattttg atgccagatc gaagttgcgc cgactaaatc gtccggtatt
     7801 aaccagttgc gcaacttcat cccataacac atacaaccaa cgccgccaga tgaacgactc
     7861 cgccactggc gcgcgttgca ggtaactcca gagcaaatct tccgccagag aattatccat
     7921 tagtcggaac agttcgtatt ctcgcggtgc ccaaagcatt agtcccggcc cgaccatcgc
     7981 cagtaactga tcgctgcgcg aatctttcag catgctgcgt aaacagaagt taccgtgaat
     8041 caacacacaa ttgtcgttaa agccttcaaa taatgccggg agacattcgc gagtgcgaaa
     8101 caggatccgc ttatcctgca tcgtcagacc ggtgttattg aactgattga gcgtggtcca
     8161 tagcacttca acatgttgcc ggtaccatga gggccagaaa ttttcctgag tattgtcgac
     8221 cgcgccgacg caaccgcgac tgtcctgacg gtgccatgcc agtaaggctt caacgatttg
     8281 gtctttgagc tgttcccagc gttctggtgt tcgggctggt gcctccaccg aaacaccacg
     8341 catccgctcc agtagcagga catcagggcc ggggtgttct tcatgcgtca tcacaccata
     8401 aatagtcggc atacggacag tcccacttct tgccagcatg gtggttttcc atgccagttg
     8461 tcgggctttt ccgggcgtac taaagcttct tgccattaac ggcattgggt ttccctggct
     8521 gtcatacaaa gcccacaacg ccgtatccgc tttttcattg acgcactcaa tacgactgag
     8581 tttttcgccc agtaaatggc ttaattcggc acgcagctgt tccattcaga ttaccctcat
     8641 aaaagctact gctttcataa tgagcgccaa tataaaagat gtcacctgaa tgagatcaat
     8701 tgttgaaaag aaaaattgag gaaaatcgta acggtacgac actcctccca aaattggctg
     8761 aagtgtcgtg aagtgaaatt agcgcatttc agcgcgaacg cgctcaagat cttcaggggt
     8821 atccacacct gtgccaggaa cttcctgagc aacagcaaca tggatttttt cgccgtacca
     8881 cagaacacga agctgctcta acatttcgat gtgttctaac ggacttgcct gccagttgac
     8941 gtaacgacgg ataaagcctg cacggtagcc ataaatgcca agatgacgca ggaagttatc
     9001 gccaacggtt tcaaggcctt ctgcaaaacg atcacgatcc caaggaatgg tggcgcgtga
     9061 gaagtacagt gcataccctt cagcgtcgag aaccactttc accgcattcg ggttaaacgc
     9121 ttcttccgca ttgtggattg gcaccgccag agtcgccata cccacctgac gctgagcgag
     9181 gttatcagca acctgacgaa tgattgtcgc agggatcatc ggttcatcac cctgcacatt
     9241 aacgatcacc gtgtcgtcgc tgaatgcgca tttttcgaca acttccgcca gacgttctgt
     9301 tcctgactga tgatcggcgc gcgtcataca tacttcaccg ccagcggctt caacggcgcg
     9361 ggcaacatcc tcatgatcgg ttgccacgat gatgcgctcg gcacctgatt cacgcgcgcg
     9421 ttcaagaaca tgaacaatca tgggtttgcc gttaatatca accaatggtt taccgggcag
     9481 acgcgtggac gcgtagcgcg cgggaataat gaccacaaaa ctcatgattt actctcatca
     9541 gcagtcagca cgcgggcttc cgtttccagc aacactggaa tgccatcgcg gagcgggaaa
     9601 gccaggttat ccagtttgca aataagctct tgtttttcct ggttatacca aagttttccg
     9661 ttgcaaaccg ggcaggcaat gatttcaagc aaacgatgat ccatagttcc tccagatgga
     9721 tcgggttatg aatgcataaa tcttatcata atcatttatg cgacggggtc tatttcccag
     9781 ccagtgcggc aatcagtaaa gagaccttgc gggcagcgtc ctaatgtcac ccgcgttgcc
     9841 tgctgccagc tcgcgaaatc agtaatcacc tgacgtaacc ctttttgcag cattgtcgtt
     9901 ggtttaatgc cttcctgtaa ccacagagag ataacttcaa ggatgcctgt ctggcgatgc
     9961 attttggcat ccattcgccc aactaattgc ccacgatgta ataatggcag aacaaaatag
    10021 ccatactggc gtttcggcgc tggggtatag cactccagcc ggtagctaaa atcaaaaagc
    10081 tgctctgcgc gtttgcgatc ccagacaaca ggatcaaaag gcgaaagtac cgcgctgtgc
    10141 gttgcagtga gctttccggc cagcgcacgc tcgagtagcg gcagcaaatc agcatgcagc
    10201 caaagattgc ccaatttttc aacatgcaca gcaatgattt gctgctgttc agccctcgct
    10261 tcgcgccacg ccgccagtgc cggacgtttc agccgatagt aatctgccag ccactgttcg
    10321 cggaatattc ccaggctacg cgcactgtta tccagcatga tgatttctgc ttctgtttgc
    10381 gaaacgagat cgcgctcatc atcccagtca ggcatgacac ggtgggttaa atcataaacg
    10441 cgctggaagt tgcgccgttc aatcaccatc acctttccgg cagtaaataa accttccaga
    10501 tgccgtttat gcggtttcca ttcccaccag ccgcttgcac ctttacgagg atgctcaaaa
    10561 tcggctgaac gtaccggccc cttatcatga atatgctgaa ttaactgtgc aatttccgcc
    10621 tcatgttcct gcatccaggc gtctttgtat ttccagccca ttttttcagg tgccagcatg
    10681 cggtggcgaa taagacgaaa gtcgctacgc ggcataaagc aggcttcatg cgcccagtat
    10741 tccattaatt cgccacgcgc cagagactca tccagccact gggcaggata atttcccaga
    10801 cgactgaaaa gcaccagata tggactacgg gcaacaatat tgatggtatc gatttgcagc
    10861 aaggacatgc gggagatcgt tgccggaata tcctccaacg acgctcgacg gcggggtttg
    10921 tttaacaggc cttgtgcggc aaggtgaaga ttacgcgcat cagcaaggga gaggtgcggc
    10981 agcgacattc atgactccat caatcgaacg ctgccgcggc gtaactagtt gccagaagcc
    11041 agcgaggtta gttgcgtaag cagtttcgct ggttcatcac ctgaaagctg tgcgtctaca
    11101 ggcaaatacc accaattttc ttctgcaaag gcccggcatt tcaccgcatc tttttcagtc
    11161 attaccagcg tttgctcggc gcttaccaac gcactgacat ccgcatggtt caaagactga
    11221 tgatcggcca gcggtacaca tttttccggt tgtacgccac acatcttcag cgtggcaaaa
    11281 aagcgcggcg gatgcccaat ccccgccatc gccactacat gttcaagctg agcaacgtca
    11341 caacgcgtac cggtacgtaa attcaccgcc tgacccggca gcagatgcat gggaatttca
    11401 ccgctgcgag ggacaccgcc gttgacgatt accgcatcaa ccgactttaa gcgccccgct
    11461 cgctcacgca ttggccccgc cggcaaccac cagccattgc caaagcgacg cacaccatca
    11521 ataacgacaa tttccacatc acgcgccaga cggtaatgct gtaaaccgtc gtcggttacg
    11581 atgatctgca catcagggtg ttgcgccaga atggctttta ccgcatcaga acgaacggga
    11641 gaaaccgcaa caggcgcatc agtgcgttga taaatcaaca caggttcatc acccgcctgt
    11701 gctgttgtgg tatctgccga caataacagc ggataagatt cagccttact accatatccc
    11761 cgcgatacga cccccacgcg aataccgcgc tgttgcaact gttccaccag ccagacaacg
    11821 accggggttt ttccgttgcc gcctgcggtg agattaccaa ccacgacaac cggtacgggg
    11881 gcacgccagg cgcgcttcag ttttagttta tagcaaagac ggatcgcgcc actcaccagg
    11941 ccatacaacc aggagagtgg cagcaatagc cgccacaaag gggattcacc agaccagatt
    12001 ttttcgatca ttggccaaac tgcattttgt gaagttgcgc gtaaacgccg cggtgctcaa
    12061 gcaaatcgtt atgcgtaccg cgttccacaa tgacaccatc ctcgacgacc acgatttcgt
    12121 ctgccttttc aatggtagac aagcggtggg caatcaccag agaggtacgg tttttctgca
    12181 actcatccag tgccgcctga atcgcacgtt cggattcggt atccagagcc gaggtagctt
    12241 catccagaat cagaatcggg ctatcacgca gcaaggctcg agcgatagca atacgctgac
    12301 gctgaccgcc agagagcagc acgccgtttt caccaatcac tgtatcgaga ccgttatcca
    12361 tcttattgat gaagtccatg gcgtaggcca tacgcgccgc ttcttcaatt tgctcacggc
    12421 tgtactgttc agtccgtgcg taagcaatgt tgttagcaac cgtatcgtta aacagatgga
    12481 cattctgcga caccagagca acctggttac gtaacgacgc cagggtatac tcgcgcagat
    12541 cgtgaccatc catcaggatt tcgccttcat caatatcgta aaaacgagtg atcaggctgg
    12601 cgatggttga tttacctgaa ccagagcgtc caaccagagc aaccgtcttc cctgccggaa
    12661 ttttcaggtt gatgttacgc aatgcaggta cgtcacgtcc cggataagta aaggtgacat
    12721 tgcggaattc cacgtcgcca gtcgcacgct cgatcacgcg cttaccttcg tctttctcct
    12781 gctcactgtc cagaatggta aacagcgtct gacaagccgc cataccgcgc tggaactggg
    12841 cgttaacgtt ggtcagtgat ttcagcggac gcatcagtgc aatcattgaa gagaaaacaa
    12901 cggtaatcgt accagcagtc aggctatcca tgacacttgg gaagctcgcc gcatacagaa
    12961 caaacgccag cgccaaagag gcgatcagct gaatgatcgg atcagagatg gaagaggctg
    13021 aaaccatttt catcccctga agacgcattc ggttgctgac tttatcaaag cgtttcgttt
    13081 ccacttcctg accaccgaaa atcaatactt ctttgtggcc cttcagcatt tgttcggcgc
    13141 tggtggtcac ctgccccatg gtgttctgca tgtttttact gatgttgcga aaacgcttcg
    13201 atactacgcg aatcgcaatc gaaacaatcg gtgccagcac aatcaaaatg atcgacagtt
    13261 gccaactgta atagaacatc atgatgaaca ggccgatgat tgacgcacct tcacgcacaa
    13321 ccgttatcag tgcgccggaa gaagaagaag caacctgttc ggaatcgtag gtaatacgtg
    13381 acaacagcgt ccccgttgac tgtttgtcaa aaaatgaaac cggcattccc atcatgtgac
    13441 caaacaggcg gcgacgcatg gtcattacca cctttcctga tacccaggag atacagtagc
    13501 tggagacata gctggtgata ccacgtaaaa tcatcagccc gatcaccacc agcggcatcc
    13561 acaccagcac ggagcgatct gttttaccaa agccatcatc aagaagtggc ttaaggagcg
    13621 ataacatgaa ggtatcgctg gctgcgttga ggattaacgc tacgcccgcc acgatcagac
    13681 ccgctttaaa aggcgcaatg gttggccaca gtcggcggaa cgtctgccac gtagagagat
    13741 ctttgtcgtt atgcattcaa aaaaccagca tttgttgaaa tagccgcata ttctacccgt
    13801 tatccactgg cacgccaaac cactgatgat accaacgagg taaaatttgc tctctgaggc
    13861 tgctaatccg ccagccttgc gctgaaaaat tgaccgtcac ttgaccctga tgtggagtat
    13921 caagccattg atatccttgc tgttgatagc gatgcttaac tttattagag ggcaatcgcc
    13981 atgcgttata gcgttatagc gcgatgccga tgcgagtgcc acttttccat tcactcgctg
    14041 aattaatggc aacgatgatg aggtattact gccatggtga ggtacctgaa gcaatgttgt
    14101 ctgcacttgc tgccagtaac ggcttagcat cttttgttca gcggggactt caatatcacc
    14161 ggttagaaga atgctattcg tcccgtcata aaccttaacc acacaggaat ggttatttcc
    14221 tttatcgttg ctagcttgta aaggccagtg cacgctgaaa cgcaatcctt gccattgcca
    14281 cgcttcgcca cgcacacagg gctgatgatg ttcccagttt aacggacttc tgatccataa
    14341 catcggccat gtgtgcaata ttgagtccag ccctccccgg tgatccagat gttcatgact
    14401 cagaataacg ccttccggtt caagattatg ccagtggagc caggggataa tcagttgttg
    14461 cccactatcc ccttcgggcc aggccagtcc tgtgtcatag agaatcgctt tgccgtttct
    14521 ggctatcacc attgccagcc cttgcccgac atcaagcatg tacacctgcc actcgtcagg
    14581 tcgaggtttt tgccacagcg gccagcacat cagcaagcct acagccacac acattgctgg
    14641 caacgttcgc caggcgttta atcgccatac caccagtaag aaccatgggg aaaatgatag
    14701 ccattgccaa cgttcagcaa tgttgatcca cccttcttgc aaactcttta acccccagaa
    14761 aagtaaagcc aaagaccggt cggcaagaaa ccataaccct tgctccagga ttaacggccc
    14821 gcttaaatgc acaaccatcg cggcgaggat caacggaacc gtgataaatg tcaccaaggg
    14881 aattgctaat agatttgcaa taaacgaggt cagactaatg ccatgaaata tgacgatttg
    14941 cacaggcata agcaggagtg tgattcccag ttgcaaatga atgagggaaa caactgcacg
    15001 caataccggc ggcagttgcc actcaggaca gggaaaccac tggtaccaaa aaatcagtgc
    15061 cgcgaccgca gcggcagaga gccataaact ttgcgagaga atggcaacag gatccatcag
    15121 caaaattgcc gccagacaac atatccatac atcccagcca ctccactgtc gcccacttaa
    15181 cttaagcatt ccccacgtag caagcgccac cacggtacgc aatgcaggag gttgcattcc
    15241 cgtcaaccag gcataaaaag cagcacagca gattccacca attaatggca tttgccagtg
    15301 gatccagcgc ccaggcagaa aaacttgccc accgcgaatg agtccggcag ccagcaacgc
    15361 cgcaaaagcg atgtgcaatc ccgatatcgc cattaaatgc gccgttccag tatcacgcat
    15421 gatatttttg atttctttgg ggacggataa ccgttccccc atacctaaac caagaataac
    15481 cgcattccac atatagggtt gcagcgttgt ttgtagtgac gccagatact gtgcacgcag
    15541 gctacaattc ggttcaatga cacttgcctg cagaaagcgg ccgatgagcg gctgatgctg
    15601 ggcaatggca taacgctggc tatcaaagcc gccatcatta agttggccat gaactgcacg
    15661 aactttgagt ttcattgacc attgttgtcc agcacaaacc gcttgcggaa gatattcgcc
    15721 atacagcaca agacctggcg cagggaatat acgtcgacct tgtagatgag taatttgacc
    15781 gtaatgagtg gtcatgccgt cagttgcagt gatctcaaca attgcatcct gcgtcgcgcc
    15841 agttaaggtt tctcctgccc acaaaatttg ctttgctgat aatatgcccc aaacgaaaaa
    15901 cagcaacgtc agcgcgatat aacggacggt tttaacaggg ataaatgcca gtacgcaggc
    15961 gaagagagtc agaaacgcaa gggttaatgt cccaggcaat tggggcaaaa tcagcaacgg
    16021 aaaaattccg caaattatgc atacgccgac tgtcgttatt ttcatgcacc cctccctgtt
    16081 tatggaaagt gtgcaacttt gttgagcggt tgtctggtgg gaattttgcg ttccccgagg
    16141 cacattcaga agaatttaac gaaagggtga aaactgctca aaactctgcg aggcagcttc
    16201 cagttcctga ttagagaaat gaaaaaagca cccgacaggt gcttttctcg cgttcaagtt
    16261 tgagtaaaaa cttaaccgta aatattggcg cgatcgcgca gttctttacc aggtttaaag
    16321 tgaggaacgt attttccttc cagttctact ttatcgccag tcttcggatt acgtccggta
    16381 cgtggtgcgc ggtagtgcaa agagaaactg ccgaaaccgc ggatttcaat acgctcgccc
    16441 tgcgcaagag tcgaggccat atgctccagc atctctttta ctgcatcttc aaccgtcttg
    16501 gcgggaatgt gcgattgctg ggtggcaagt ctttctatca attctgactt ggtcatgatt
    16561 cctccggttc cttaaaggca aattaagcgg ctgctgttgc tgcattgatt aagggcggcc
    16621 gtagccgccc ttagtgcttg attacaggac gaaacctgca atctgtcaag taaactcaac
    16681 aaacttcgga ataaaaatcc cgaagagtca gagaattact cgcctttagc tgctttgaaa
    16741 gcttcagcca ttgcgttgtt ggagaagttt gcatcttcct gtttgttaac agttgcgatt
    16801 gcatctttct cgtcagcttc gtctttcgca cgaacagaca ggctgattgc gcggttttta
    16861 cgatcaacgc cggtgaattt agcttcaact tcgtcgccaa cgctcagaac cagggtagcg
    16921 tcttcaacgc ggtcacggga tgcttcagaa gcacgcaggt aaccttcaac gccgtcagcc
    16981 agttctacgg ttgcgccttt agcgtcaact gcagttactt taccggttac gatagcgcct
    17041 ttcttgttca gagcaaccca gttgttgaac ggatcttctg cgagctgttt aacgcccaag
    17101 gagatacgtt cacgttctgc gtcaacctgc agaacaactg cagcgatttc gtcgcctttt
    17161 ttgtattcac gaactgcttc ttcgcctgca acgttccagg agatgtcaga caggtgaacc
    17221 aggccgtcga tgccgccgtc taggccgatg aagataccga agtcagtgat agacttgatt
    17281 ttaccttcaa cacggtcgcc cttgttgtgg gtttccgcga actgctgcca cgggttagct
    17341 ttgcactgtt tcagacccag ggagatacga cgacgttctt cgtcgatatc cagaaccata
    17401 acttccacta catctccaac gttaacaact ttggacgggt ggatgttttt gttggtccaa
    17461 tccatttcgg aaacgtgtac caggccttca acgccttctt cgatttcaac gaagcagccg
    17521 tagtcggtca ggttggtcac gcgaccagtc agtttggtac cttccggata acgtttagcg
    17581 atagctaccc acggatcttc gcccaactgt ttcaggccca gggatacacg ggtacgttcg
    17641 cggtcgaact tcagcacttt aacagtgatt tcgtcgccca cgttgacgat ttcgctcgga
    17701 tgcttaacgc gtttccaggc catgtcagtg atgtgcagca ggccgtcaac gccgcccaga
    17761 tcaacgaatg caccgtagtc agtgaggttc ttaacgatac ctttaacttc catgccttcc
    17821 tgcaggtttt ccagcagctg atcgcgctct gcgctgtttt cggattcgat aacggcacga
    17881 cgagaaacaa caacgttgtt gcgcttctga tccagcttga ttactttaaa ttcaagctct
    17941 ttgccttcca ggtgcagagt gtcacgcacc ggacgaacgt ctaccagaga acctggcagg
    18001 aacgcacgaa taccgttcag ctcaacagtg aagccgccct taactttgcc gttgataaca
    18061 ccggtaacag tttcagcatc ttcgtaagct ttttccagcg tgatccaggc ttcgtgacgt
    18121 ttagctttct cacgggacag cagagtttca ccgaagccgt cttctactgc gtccagagca
    18181 acgtcaactt cgtcacctac ctggatttcc agctcgccct gggcgttttt gaactgctca
    18241 gccgggatgg cggactcaga tttcagacca gcgtcaacca gtactacgtc tttgtcgata
    18301 gcaacaacaa cgccacgaac gatagaaccc gggcgggttt cgatttcttt taaggactct
    18361 tcaaagagtt gagcaaaaga ttcagtcatg tttaatcttc aggtttatat ttaacgtcca
    18421 cctggctcca tgccggatgg ggttgtttaa catacccgct gtcattccat tgcaacgggg
    18481 gtactgcaaa ttcggtcgct tatgcgagag ccaatttctg gcgcgcgtat tgtagcgctt
    18541 tttcaatcac ttgctcaatg cttaaggtgg tggaatccaa cactaaagca tcggctgccg
    18601 gaaccagtgg cgctaccgct cggttacgat cgcggtcgtc gcgttctttg atctcggcca
    18661 aaaggcgctc aaagttaaca ctaaagccct tctcctgcaa ctgtagcatg cggcgatgcg
    18721 cacgttcttc cgaggaggcg tcaaggaaaa ttttcactgg tgcatcaggg aataccaccg
    18781 ttcccatgtc gcggccatcg gcaatcagac ctggtaattc gcgaaacgcg cgttggcgac
    18841 gcaataatgc ttcacgaacg cgtgggaatg tcgcgacttg tgaagccgca ttcgccactt
    18901 cctgagtacg aatttcgccg ctgacatctt ccccttcgag gatcacttcc agattgccat
    18961 tggttgacac aaaacgtaca tccagatggg atgccagcgg taccagcgca tcttctgacg
    19021 caacatcaac atggtgatgt aatgccgcca atgccagtac gcgataaatt gcacccgaat
    19081 ccagcagatg ccattgcaat gcttccgcca tagccttaca caaggtgcct ttccctgcac
    19141 cgcttgggcc atcaatggta ataaccgggg caattgccgt catctttatc tccttaaaac
    19201 aggcgtaccg ttaacataac cgcgcgcatt atacgcgccg acgccacaaa tcgttaacgt
    19261 tgtgtgcaaa aaccagtttt gtctgtattc agatggggat ttattgcgca attatagcgg
    19321 gctggcagaa gaccagcccg aaagatgaca atgatttact taccagaggc gatacgatca
    19381 cggatgtgtt gcgcacgctc tgttgatggt gggtgagagt caaacatgga ctgggtgcga
    19441 ccgccatcca gactagccag tttttcaaag ctgccaacca gcccctaggt gctgatgcca
    19501 cgtttcttca acagatcaaa ggagaaatca tctgcttcgg actctttatc acgggagtat
    19561 ttagcattaa tagcgccttc tgcgatatca cccaattgtg agcgggaaag ctgggaagcc
    19621 acaccgctgg tagctgaaat ggcatcgcgt gcggcaacga tcgcataaga aactttcatt
    19681 tcagccagcg agtgacccaa cgcgacgtgg cccagttcat ggcccagaac accttcaatt
    19741 tcgttgtcat tcatcatgtc catcaggcca ctgtagacac ggacacagcc gttcgccatc
    19801 gcccatgcgt tgacgtcgct ggtcatataa acctatagtt gaccggcgtg ccattaatat
    19861 tgttacccaa tgctttggcg atttttgcca gacgtttacc gtacttgctg gatttacttg
    19921 cgacttgatt gccgctgtcc atttcggcac agccctgatt ggcaatcgct tttgcatcgg
    19981 catcgcttaa tgttgctgct ttataggcat ttaaaccgga gctgatagcc atattggtat
    20041 caataccgtg ggtattttga caccctgtca gtaatgctgc agaggtcgca atcgccagca
    20101 gtaatttagt attcttcatg tgaatcatcc gttgattaat catatataaa cattatgtat
    20161 caacaactta cattgacaag cgacgctacc attaatcaaa atgactcaca aggtccgaaa
    20221 aaaaacgccg acaatgtg
//
LOCUS       DAJVUP010000068        20165 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.068, whole genome shotgun sequence.
ACCESSION   DAJVUP010000068 DAJVUP010000000
VERSION     DAJVUP010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20165
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.068"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..696
                     /gene="mepH"
                     /locus_tag="OQQ75_002216"
     CDS             <1..696
                     /gene="mepH"
                     /locus_tag="OQQ75_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-endopeptidase MepH"
                     /protein_id="HCS1976531.1"
                     /translation="TKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITA
                     SKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATK
                     VAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAP
                     IERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHY
                     VGARRVMTPKTLR"
     gene            824..1405
                     /gene="sodB"
                     /locus_tag="OQQ75_002217"
     CDS             824..1405
                     /gene="sodB"
                     /locus_tag="OQQ75_002217"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HCS1976532.1"
                     /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK
                     GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG
                     SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE
                     HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA"
     gene            complement(1551..2732)
                     /locus_tag="OQQ75_002218"
     CDS             complement(1551..2732)
                     /locus_tag="OQQ75_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1976533.1"
                     /translation="MKINYPLLALALALAIGAFGIGTTEFSPMGLLPVIARGVDVSIP
                     AAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLML
                     SRILTSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETI
                     GWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGA
                     GAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGF
                     LLLLMVIMLAIPFLARNEFGAAISMVVWGAAAFAVVPPLQMRVMRVASEAPGLSSSVN
                     IGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVAN
                     S"
     gene            complement(2898..2987)
                     /gene="ynhF"
                     /locus_tag="OQQ75_002219"
     CDS             complement(2898..2987)
                     /gene="ynhF"
                     /locus_tag="OQQ75_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein YnhF"
                     /protein_id="HCS1976534.1"
                     /translation="MSTDLKFSLVTTIIVLGLIVAVGLTAALH"
     gene            3286..4311
                     /gene="purR"
                     /locus_tag="OQQ75_002220"
     CDS             3286..4311
                     /gene="purR"
                     /locus_tag="OQQ75_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HCS1976535.1"
                     /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH
                     YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE
                     KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID
                     NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ
                     GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN
                     VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG
                     PFRDYRR"
     gene            complement(4308..5240)
                     /locus_tag="OQQ75_002221"
     CDS             complement(4308..5240)
                     /locus_tag="OQQ75_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1976536.1"
                     /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL
                     AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV
                     RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF
                     RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR
                     VVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND
                     MSPALTWLLEYLGDSETLNKEWLREPEETPATGD"
     gene            5353..6564
                     /locus_tag="OQQ75_002222"
     CDS             5353..6564
                     /locus_tag="OQQ75_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HCS1976537.1"
                     /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS
                     ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF
                     VQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQ
                     AIFATLFAITVVLILPIFWLKPTTKAGNNSQDGLTFTDLLRSKTYRGNVLIYAACSAS
                     FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV
                     LFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA
                     LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEAGCQNH
                     GNAEVAHSESH"
     gene            6855..8003
                     /gene="cfa"
                     /locus_tag="OQQ75_002223"
     CDS             6855..8003
                     /gene="cfa"
                     /locus_tag="OQQ75_002223"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HCS1976538.1"
                     /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP
                     DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR
                     LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC
                     EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSMVGVTISAEQQKMAQERCEGLDVTIL
                     LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN
                     VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE
                     IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR"
     gene            complement(8043..8684)
                     /gene="ribE"
                     /locus_tag="OQQ75_002224"
     CDS             complement(8043..8684)
                     /gene="ribE"
                     /locus_tag="OQQ75_002224"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HCS1976539.1"
                     /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH
                     NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH
                     IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH
                     LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA"
     gene            8899..10272
                     /gene="mdtK"
                     /locus_tag="OQQ75_002225"
     CDS             8899..10272
                     /gene="mdtK"
                     /locus_tag="OQQ75_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MdtK"
                     /protein_id="HCS1976540.1"
                     /translation="MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDM
                     AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLI
                     MLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
                     MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSM
                     RDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI
                     ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTV
                     SLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITF
                     TAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVI
                     ILQRASR"
     gene            complement(10313..11569)
                     /locus_tag="OQQ75_002226"
     CDS             complement(10313..11569)
                     /locus_tag="OQQ75_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
                     /protein_id="HCS1976541.1"
                     /translation="MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENT
                     VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH
                     PEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
                     LLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT
                     DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA
                     PVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINL
                     NGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITD
                     ASRQTLCNALKLQPDEDGIGATLQPA"
     gene            11877..11953
                     /locus_tag="OQQ75_002227"
     tRNA            11877..11953
                     /locus_tag="OQQ75_002227"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11911..11913,aa:Val,seq:gac)
     gene            11958..12034
                     /locus_tag="OQQ75_002228"
     tRNA            11958..12034
                     /locus_tag="OQQ75_002228"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11992..11994,aa:Val,seq:gac)
     gene            12142..12447
                     /locus_tag="OQQ75_002229"
     CDS             12142..12447
                     /locus_tag="OQQ75_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HCS1976542.1"
                     /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES
                     EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA"
     gene            12573..14177
                     /locus_tag="OQQ75_002230"
     CDS             12573..14177
                     /locus_tag="OQQ75_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-NAD(P)-binding protein"
                     /protein_id="HCS1976543.1"
                     /translation="MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPY
                     SDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILL
                     GEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI
                     ATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI
                     EDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKG
                     EEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFVQAWFAERKQRDPFDWAEKNL
                     QEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPS
                     ESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKV
                     KDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTA
                     CAEIGEAMARAVVKPASRARRRLSFD"
     gene            complement(14189..15001)
                     /locus_tag="OQQ75_002231"
     CDS             complement(14189..15001)
                     /locus_tag="OQQ75_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976544.1"
                     /translation="MIITRADLREWRIGAVMYRWFLRHFRRGGSYADIHHALIEEGYT
                     DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCED
                     NARIAIAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI
                     ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG
                     VVDSIILGSGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC"
     gene            complement(15005..15790)
                     /locus_tag="OQQ75_002232"
     CDS             complement(15005..15790)
                     /locus_tag="OQQ75_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase cytochrome B subunit"
                     /protein_id="HCS1976545.1"
                     /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL
                     GLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT
                     AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI
                     MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW
                     LLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH"
     gene            complement(15787..16455)
                     /locus_tag="OQQ75_002233"
     CDS             complement(15787..16455)
                     /locus_tag="OQQ75_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HCS1976546.1"
                     /translation="MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDES
                     RCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCID
                     VCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
                     KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIK
                     KENV"
     gene            complement(16519..17157)
                     /locus_tag="OQQ75_002234"
     CDS             complement(16519..17157)
                     /locus_tag="OQQ75_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707570.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdhW family putative oxidoreductase system
                     protein"
                     /protein_id="HCS1976547.1"
                     /translation="MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAE
                     FIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYS
                     TQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEA
                     AIAAMDVAPEYADIRQVESSTAELYLFSERFMTYGKAYGLCEWFEVEQFQNP"
     gene            complement(17170..19272)
                     /locus_tag="OQQ75_002235"
     CDS             complement(17170..19272)
                     /locus_tag="OQQ75_002235"
                     /EC_number="1.2.7.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde ferredoxin oxidoreductase"
                     /protein_id="HCS1976548.1"
                     /translation="MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDE
                     VPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQ
                     MKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCV
                     AAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKR
                     LNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPP
                     GNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGN
                     TCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS
                     KGVFKCVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWN
                     LGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPL
                     KLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTV
                     SPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRN
                     EHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQR
                     LGLEDIAADLAAHNLLPV"
     gene            complement(19242..19919)
                     /locus_tag="OQQ75_002236"
     CDS             complement(19242..19919)
                     /locus_tag="OQQ75_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001070231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like protein"
                     /protein_id="HCS1976549.1"
                     /translation="MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQE
                     DIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFG
                     DNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRGIGCS
                     ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWL
                     TVGQVIY"
BASE COUNT         5042 a         5252 c         4723 g         5148 t
ORIGIN      
        1 accaaaaaag cagataaaaa gaaaagcacg gcaaccacca aaaagaccca gaaaacagcg
       61 aaaaaagccg ccagtaaaag tacgaccaaa agcaaaaccg cttcttccgt taaaaaatct
      121 tccattaccg cttctaaaaa cgccaaaact cgcagcaaac acgccgtcaa taaaacggcc
      181 tcagccagct ttaccgaaaa gtgtaccaaa cgtaagggct ataaatcgca ttgtgtgaaa
      241 gtcaaaaatg ccgcgtcagg aactcttgcc gacgcgcaca aagcgaaggt gcaaaaagct
      301 acgaaagtgg caatgaataa actgatgcag caaattggta agccatatcg ttggggtggc
      361 agctcaccgc gtaccggttt tgattgcagc ggcctggttt attacgctta taaagatttg
      421 gtgaaaattc gtattccgcg tacggcgaat gaaatgtatc acctgcgtga tgcagcgcca
      481 atcgaacgta gtgaactgaa aaacggcgac ctggtctttt tccgtactca gggacgcggc
      541 acagccgatc atgtcggcgt gtatgtcggc aacggcaaat ttattcagtc accgcgcaca
      601 ggtcaggaaa ttcaaatcac ttctctcagt gaagactact ggcagcgcca ctatgttggc
      661 gctcgtcggg taatgacccc aaaaacactt cgctaaaact ttaccctgtt gttacggcaa
      721 cagggtaagt tcatcttttg tctcaccttt taatttgcta ccctatccat acgcacaata
      781 aggctattgt acgtatgcaa attaataata aaggagagta gcaatgtcat tcgaattacc
      841 tgcactacca tatgctaaag atgctctggc accgcacatt tctgcggaaa ctatcgagta
      901 tcactacggc aagcatcatc agacttatgt cactaacctg aacaacctga ttaaaggtac
      961 cgcgtttgaa ggtaaatcac tggaagagat tattcgcagc tctgaaggtg gcgtattcaa
     1021 caacgcagct caggtctgga accatacttt ctactggaac tgcctggcac cgaacgccgg
     1081 tggcgaaccg actggaaaag tcgctgaagc tatcgccgca tcttttggca gctttgccga
     1141 tttcaaagcg cagtttactg atgcagcgat caaaaacttt ggttctggct ggacctggct
     1201 ggtgaaaaac agcgatggca aactggctat cgtttcaacc tctaacgcgg gtactccgct
     1261 gaccaccgat gcgactccgc tgctgaccgt tgatgtctgg gaacacgctt attacatcga
     1321 ctatcgcaat gcacgtcctg gctatctgga gcacttctgg gcgctggtga actgggaatt
     1381 cgtagcgaaa aatctcgctg cataataact gatggcaaat gcagcattgc ctgatgcgct
     1441 tcgtttacca tgccaacgcg gatgaggcgt taacagcgca ttcggcaaga taaatcgcac
     1501 gttgtcagca actgtaacgc agaaggttat ccttctgcgt ttttgtttaa ttagctgtta
     1561 gcaacgcaaa ctgtttcagg ttgttttctg gctgacataa acaccagcaa taatgccagt
     1621 cccgcgacaa tcgctcccat caccggcaca aagctgtatc ccagcccagc ggaaattacc
     1681 gcaccaccag cagctgctcc cagcgcattt ccaagattaa aggcaccaat attgactgat
     1741 gaagacagac ctggcgcttc actggcgaca cgcatcacgc gcatctgtaa cggcggtacg
     1801 accgcaaagg ctgctgcgcc ccacaccacc atgctaatag ctgcgccgaa ctcattgcgg
     1861 gccaggaacg ggattgccag cataatcacc atcaacaaca acaaaaagcc tttcaacgtg
     1921 ccgttaactg aacgatctgc cagtttgccg ccgggatagt taccgataga gaatccgaca
     1981 ccaatcagca ccagcattgc cgtaacgaac accggtgttg cgtgggtaat actttgcagt
     2041 accggagaga tataggtgta gagagtaaac attgcaccag ctcccagtac cgtcgtcagc
     2101 aatgcagaca acacctgcgg acgcattaat accgccagct cttttttcac ttcaggtcgt
     2161 gcccctgcac cacctttagg taatgagaag aacagactta ccattgaaat cactcccagc
     2221 cccgccgttg ccagaaatga catccgccag ccgatggttt cacccaacca ggtcgccgcc
     2281 ggcacgccac cgatatttgc cagggttaac cccataaaca tagtggcaac tgcgctggcc
     2341 tgtttatgtt ttggctccac gcttgcggcc acgactgaac ccaaaccaaa aaatgctccg
     2401 tgattcaggc tggtcaaaat gcgtgaaagc atcagggtca tataatccgg cgcgatggcg
     2461 gaaagtacgt tgccgagcgt gaaaattgcc atcaggaaaa tcaacgcact gcggcgggca
     2521 cgatgagaaa gtagaagcgt catcagcggc gcgccaacca ttacgccaac tgcataggca
     2581 ctgattaaca ttccggcagc gggaatcgag acatccacac cgcgcgcaat gacgggcaac
     2641 aagcccattg gcgagaactc cgttgtcccg ataccaaacg cgccaatcgc cagcgccagc
     2701 gccagcgcca gcaacggata gttaattttc atgccttatc tccacctctt cgcgtcatta
     2761 cgcgatattc attaaagtgg cgaaagcatg acagcaatca caaaaaaatg aaaataacaa
     2821 aaagagaaaa cacttttgcc attttgctaa caaacaggaa ggagatgcga gggagaacgc
     2881 gctccctcga gaggaaatca gtgcagcgcg gcagtcaaac ccacggccac gatcaaaccg
     2941 aggacgataa tcgttgttac cagtgaaaat ttaaggtcgg tgctcatcaa gttttctcct
     3001 tttttattac cacacaaata gtgatattac gcatttttac acactgtgat gaaaaaatct
     3061 cccgtcattt ataatgataa gtgtttttac cacttcccct tttcgtcaag atcggccaaa
     3121 attccacgct tacactattt gcgtactggc cattgacccc ttcctgacgc tccgtgtcgt
     3181 ttttccggcg taccgcaaca cttttgttgt gcgtaaggtg tgtaaaggca aacgtttacc
     3241 ttgcgatttt gcaggagctg aagttagggt ctggagtgaa atggaatggc aacaataaaa
     3301 gatgtagcga aacgagcaaa cgtttccact acaactgtgt cacacgtaat caacaaaaca
     3361 cgtttcgtcg ctgaagaaac gcgcaacgcc gtgtgggcag cgattaaaga attacactac
     3421 tcccctagcg cggtggcgcg tagcctgaag gttaaccaca ccaagtctat cggtttgctg
     3481 gcgaccagca gcgaagcggc ctattttgcc gagatcattg aagcggttga aaaaaattgc
     3541 ttccagaaag gttacaccct gattctgggt aatgcgtgga acaatcttga gaaacagcgg
     3601 gcttatctgt cgatgatggc gcaaaaacgc gtcgatggtc tgctggtgat gtgttctgag
     3661 tacccagagc cgttgctggc gatgctggaa gagtatcgcc atatcccaat ggtggtgatg
     3721 gactggggtg aagcaaaagc tgacttcacc gatgcggtca ttgataacgc gttcgaaggc
     3781 ggctacatgg ccgggcgtta tctgattgaa cgcggtcacc gcgaaatcgg cgtcatcccc
     3841 ggcccgctgg aacgtaacac cggcgcaggc cgccttgccg gttttatgaa ggcgatggaa
     3901 gaagcgatga tcaaggtgcc ggaaagctgg attgttcagg gtgactttga acccgaatct
     3961 ggttatcgcg ccatgcagca aatactgtcg cagccgcatc gccctactgc cgtcttctgt
     4021 ggtggcgata tcatggcaat gggcgcactt tgtgctgctg atgaaatggg tctgcgcgtc
     4081 ccgcaggatg tttcgctgat cggttatgat aacgtgcgca acgcccgcta ttttacgccg
     4141 gcgctgacca cgatccacca gccaaaagat tcgctgggtg aaacagcgtt caacatgctg
     4201 ttggatcgta tcgtcaacaa acgtgaagaa ccgcagtcca ttgaagtgca tccgcgcttg
     4261 attgaacgcc gctccgtggc tgacggcccg ttccgcgact atcgtcgtta atcacccgtt
     4321 gcgggagtct cttccggctc ccgcagccac tccttattca gcgtctcact atcgccgaga
     4381 tactcaagca gccaggttaa cgcaggcgac atatcatttt gctgccatgt cagacaacat
     4441 gccgaatccg ggaaggggtt ttccaattca agtgctaccc acttcccctc attaagccac
     4501 ggtttggcga aatgtgttgg caccatccct atgcataatc ctgccgagat acaggttgcc
     4561 gatgattccc agtcaggcac gacaactctt ttttggttat ccagtaacca ggtaatacgt
     4621 ttaggtagcg ttcgcgaggt gtcttcgcgc accaacgacg gccagttgcg caacgtatca
     4681 tcgctgaatg ggccatccat caacgccagc gggtggtggc tggcaacaac gcaactccag
     4741 cttagcatcc ccatatcccg gaaggcataa cgaccgccta ccggaatcgc gcgtgttgcg
     4801 ccaatcgcca gttccacgcg cccgtcggaa agcgcatccc agacaccgtt gaacacttcc
     4861 tgaaagacaa gaagttcgac atcatcaaaa tggcgataaa aatcaacgat catctgccgt
     4921 gtacgttctg gcctgacaat attatccact gcgatagcta actgaccgcg ccagccgttc
     4981 gctatctgct gacattgctg gcgggtgatc tgcatttttt tgacaacaga gcgcccttct
     5041 ttgagaaacc acgctccagc agcggtcagc tccacatcac ggtgccgtcg ttcaaagagc
     5101 ggcaccgcca gccactcttc cagctgacgc acggtatagc tgaccgcaga aggaacgcga
     5161 tgcagctcct gtgccgcagc gctaaaacta ccattacgcg ctaccgcatc aacaacttcg
     5221 agtgaatatt ctgaccacat agtctgcctg caaaattttt gaaatcagtc atcaaatatt
     5281 accgtttcac aacactaatt tcactcccta cactttgcgg cggtgtttaa ttgagagatt
     5341 tagagaatat acatgcaacc tgggaaaaga tttttagtct ggctggcggg tttgagcgta
     5401 ctcggttttc tggcaaccga tatgtatctg cctgctttcg ccgccataca ggccgacctg
     5461 caaacgcctg cgtctgctgt cagtgccagc cttagtctgt tccttgccgg ttttgccgca
     5521 gcccagcttc tgtgggggcc actctccgac cgttatggtc gtaaaccggt gttattaatc
     5581 ggcctgacaa tttttgcgtt aggtagtctg gggatgctgt gggtagaaaa cgccgctacg
     5641 ctgctggtat tgcgttttgt acaggctgtg ggtgtctgcg ccgcggcggt tatctggcaa
     5701 gcgttagtga cggattatta tccttcacag aaagttaacc gaatttttgc gaccatcatg
     5761 ccgctggtgg gtctatctcc ggccctggct cctctgttag gaagctggct gctggtccat
     5821 ttttcctggc aggcgatttt cgccaccctg tttgccatta ccgtggtgct gattctgcct
     5881 attttctggc tcaaacccac gacgaaggcc ggtaacaata gtcaggatgg tctgaccttt
     5941 accgacctgc tacgttctaa aacctatcgc ggcaacgtgc tgatatacgc ggcctgttca
     6001 gccagttttt ttgcatggct gaccggttca ccgttcatcc ttagtgaaat gggctacagc
     6061 ccggcagtta ttggtttaag ttatgtcccg caaactatcg cgtttctgat tggtggttat
     6121 ggctgtcgcg ccgcgctgca gaaatggcaa ggcaagcagt tattaccgtg gttgctggtg
     6181 ctgtttgctg tcagcgtcat tgcgacctgg gctgcgggct tcattagcca tgtgtcgctg
     6241 gtcgaaatcc tgatcccatt ctgtgtgatg gcgattgcca atggcgcgat ctaccctatt
     6301 gttgtcgccc aggcgctgcg tcccttccca cacgcaactg gtcgcgccgc agcgttgcag
     6361 aacactctac aactgggtct gtgcttcctc gcaagtctgg tagtttcctg gcttattagt
     6421 atcagcacgc cattgctcac caccaccagc gtgatgttat caacagtagt gctggtcgcg
     6481 ctgggttaca tgatgcaacg ttgtgaagaa gctggctgcc agaatcatgg caatgccgaa
     6541 gtcgctcata gcgaatcaca ctgatctata tcgatatact tatacttagg ctgctaacaa
     6601 aattttgttg tatgattgaa attagcggcc tatactaatt tcgagttgtt aaagctacga
     6661 taaatattat gtttttacgg ggacaggatc gttcccgact cactatggat ggtcatttcg
     6721 gcaagggttc ctcctttccc tctgttctac gtcggattat agactcgcgg ttttttctgc
     6781 gagatttctc acaaagccca aaaagcgtct acgctgtttt aaggttctga tcaccgacca
     6841 gtgatggaga aactatgagt tcatcgtgta tagaagaagt cagcgtaccg gatgacaact
     6901 ggtaccgtat cgccaacgaa ttacttagcc gtgccggtat agccattaac ggttctgccc
     6961 cggcggatat tcgtgtgaaa aaccccgatt tttttaaacg cgttctgcaa gaaggctctt
     7021 tggggttagg cgaaagttat atggatggct ggtgggaatg tgaccgactg gatatgtttt
     7081 ttagcaaagt cttacgcgca ggtctcgaga accaactccc ccatcatttc aaagacacgc
     7141 tgcgtattgc cggcgctcgt ctcttcaatc tgcagagtaa aaaacgtgcc tggatagtcg
     7201 gcaaagagca ttacgatttg ggtaatgact tgttcagccg catgcttgat cccttcatgc
     7261 aatattcctg cgcttactgg aaagatgccg ataatctgga atctgcccag caggcgaagc
     7321 tcaaaatgat ttgtgaaaaa ttgcagttaa aaccagggat gcgcgtactg gatattggct
     7381 gcggctgggg cggactggca cactacatgg catctaatta tgacgtaagc atggtgggcg
     7441 tcaccatttc tgccgaacag caaaaaatgg ctcaggaacg ctgtgaaggc ctggatgtca
     7501 ccattttgct gcaagattat cgtgacctga acgaccagtt tgatcgtatt gtttctgtgg
     7561 ggatgttcga gcacgtcgga ccgaaaaatt acgataccta ttttgcggtg gtggatcgta
     7621 atttgaaacc ggaaggcata ttcctgctcc atactatcgg ttcgaaaaaa accgatctga
     7681 atgttgatcc ctggattaat aaatatattt ttccgaacgg ttgcctgccc tctgtacgcc
     7741 agattgctca gtccagcgaa ccccactttg tgatggaaga ctggcataac ttcggtgctg
     7801 attacgatac tacgttgatg gcgtggtatg aacgattcct cgccgcatgg ccagaaattg
     7861 cggataacta cagtgaacgc tttaaacgga tgtttaccta ttatctgaat gcctgcgcag
     7921 gtgctttccg cgcccgtgat attcagctct ggcaggtcgt gttctcacgc ggtgttgaaa
     7981 acggccttcg agtcgctcgc taaaggctat tctatcgccc cctctccggg ggcgatttca
     8041 gatcaggctt ctgtacctgg ttgattcatg gcattttctc gtgccgccag cacacgttct
     8101 accgtatcta ccactgcctg agtttgtgga tcaatttcaa tgttgacgcg tgcgccgagt
     8161 tttttcttcc caagagtcgt gcgttccaga gtttccggaa ttaaatggac gcaaaaacgc
     8221 gttggcgtga cttcgccgac ggtcaggcta ataccgtcga tgccaataaa tcctttgtac
     8281 aggatatatt tcatcaactg actatcctgg actttaaacc agatctggcg attattttcc
     8341 gaggttaata ttttcgccac ttcagcggtg gtcataatat gacctgacat taagtgtccg
     8401 ccaatttcat cactgaattt cgccgcacgc tcaacgttta cccaatcccc cacttttaaa
     8461 tcgccaagat tggtaatgcg taacgtttct ttcatcaggt caaaactgac atggttgccg
     8521 ttaatttccg tcacggtcag gcagcaaccg ttatgcgcca cggaagcacc ggtttccagg
     8581 ccgtccagca tgtggtcggg taactccacc acatgcgtac gaaaatttgg tttctcgtca
     8641 atcgacacca gttttgcggt gccctgtaca atccccgtaa acatacttac aactcctgaa
     8701 atcagttaag acattctgtt cagcacaata gcaggtggca aacgccctta ccagtgaagg
     8761 ggtaagaatg actatttttt cactggagaa ttaataaatc ctcgctacaa tagactgaat
     8821 ttcccctgct tcttcttttt gctgcccatt caggcggctt tttagtctct catataacta
     8881 caaataaaag gtgttcacgt gcagaagtat atcagtgaag cgcgtctgtt attagcatta
     8941 gcaatcccgg tgattctcgc gcaaatcgcc caaactgcga tgggttttgt cgataccgtg
     9001 atggcgggcg gctatagtgc caccgacatg gcggcggtcg ctatcggtac ttctatctgg
     9061 cttccggcga tcctctttgg tcacggactg ctgctggcat taacgccggt tatcgcgcaa
     9121 ttaaatggtt ccggtcgacg tgagcgcatt gcgcatcagg tgcgacaagg tttctggctg
     9181 gcaggttttg tttccgttct cattatgctg gtgctgtgga atgcaggtta cattatccgc
     9241 tccatggaaa acatcgatcc ggctctggcg gacaaagccg tgggttatct gcgtgcgttg
     9301 ttgtggggcg cgccgggcta tctgttcttc caggttgccc gtaaccaatg tgaaggtctg
     9361 gcaaaaacca agccgggtat ggtaatgggc tttatcggcc tgctggtgaa cattccggtg
     9421 aactatatct ttatttatgg tcatttcggt atgcctgagc tcggtggcgt tggttgtggc
     9481 gtggctactg cggcggtgta ttgggtcatg ttccttgcca tggtttctta cattaaacgc
     9541 gcccgctcca tgcgcgatat tcgtaacgaa aaaggcaccg cgaaacccga tcctgcggtt
     9601 atgaaacgac tgattcaact cggtttaccg attgcgctgg cactattctt tgaagtgaca
     9661 ctgtttgccg tcgtggctct gttagtgtct ccgctcggta ttgttgatgt cgcaggacac
     9721 cagattgccc tgaactttag ttcactgatg tttgtgcttc caatgtcgct ggcggcagcg
     9781 gtaactatcc gcgtaggtta tcgtctgggt cagggctcaa cgctggatgc gcaaaccgct
     9841 gcgcggaccg ggcttatggt gggtgtctgt atggcaaccc tgacggccat tttcacggtt
     9901 tcactccggg agcaaatcgc cctgttgtac aacgacaatc ccgaggttgt aacgctggct
     9961 gcgcatttga tgttgctggc ggcggtatat cagatttctg actcaatcca ggtgattggc
    10021 agtgggattt tgcgtggtta taaagatacg cgttccattt tctatatcac ctttacagct
    10081 tactgggtgc tgggcttgcc aagcggctat attctggcac tgaccgatct ggtcgttgaa
    10141 cctatggggc cagcaggctt ctggataggc tttattatcg gcctgacatc ggcagccatt
    10201 atgatgatgt tgcgtatgcg gttcctgcaa cgtctgccgt cagttatcat tctgcaacga
    10261 gcatcccgct aataaagaca aggcgcaacc ttcacgggtt gcgcctgtgt ttttacgcag
    10321 gctggagcgt tgcgccaatc ccgtcttcgt ctggctgtaa tttcagagcg ttgcacagag
    10381 tttgccgact ggcatctgtt atctcaacgt gtatatcacc ggtaacttcc cctttcacat
    10441 tgatgaagtc aggtgagatt tctttcgcac tggtttgcag gcaaatcgct ccctctccgc
    10501 gcaggcgttt cactttcagt tgcacatgcg ttgccgcacc agtgatcagc cacagttttc
    10561 cgccattcag attgatgtta ccaacaataa aagtgacacc gtcacctttt accgtactgc
    10621 cgtcgagaat caacacaccg ccctgctgta cagtaatcgt tgattgttgc agatctgcgc
    10681 catagccaat aatcattgaa gcgccgtcca gtaatgcaac actcccggtc agttcaaccg
    10741 gtgcgcgatc ttcctctacg acaaaatttt cgtccgcgct ggtgggtgac aacaggatca
    10801 ctgttccacc ttgtattacc gcattttcca gcgtaccggc atgcacttca gcccgaccac
    10861 ccacattcac ggacaggttt tgcgtcttac cggaactgta gagctgaagg ccatccgtcc
    10921 ccagacgata aatggatcca ttctcaacaa tggtgtcaga gtcttcacca ccgagattat
    10981 tcatggtgcc accagcaagc aacgtatcac tggctttccc ggccagcata aaaacgccgc
    11041 cctgattaat ctcacaattg ctggcttccc cacctggata caccaacaat tcaccacctt
    11101 catctaccac gaccgctgag gttgtcccat taaccaacag gccgccctct tgatcgagaa
    11161 tgattttttc cgcgcgatgt ccttccagta cacgcaggtt accgccattt tccagcaaca
    11221 aaccgcaggc ataaccctga tcaacgctga attcaccttc gggatggcgg ccattaaccg
    11281 tagcgagcgt agagagacta attgcgcctc cctcggactg aacaatatct gtggcaatgg
    11341 caccgtcgct gaccgatagc gtgccattgt taccgtactg tgtgcatttg gcgatcccac
    11401 cggttgccac tttcaaccag ccagcccccg tgactacggt attttcggct cttccgccag
    11461 cttcaacaat caactcgcct tcagtaagtt gcgtcgcgcc aatgacctcg ccggtcttaa
    11521 caatttgcac attcccgtcg ctcatcaagt ttttcgcatc agatcccatg atttattcct
    11581 ttgctgcatc tgtgtgcctt tattgctacc taaatgtaaa ggctacggag gatttatcca
    11641 cgacagattt gagatggtgg caaacaactc tgtttaaact ctgatacacg aattattggg
    11701 ttgtatcaga tgtaaatgcg atcctgaata aaaatcgccc ttgcaaatca acaaaatata
    11761 gccaatttgc ttaaaagctc tgcaaacggt cgaaatagcg cagaaaatta cgttttgcct
    11821 cttgccacct tcccactctg ccgctaatat tcgtccccgt tgtcacctac aacgttgcgt
    11881 tcatagctca gttggttaga gcaccacctt gacatggtgg gggtcgttgg ttcgagtcca
    11941 attgaacgca ccatcctgcg tccgtagctc agttggttag agcaccacct tgacatggtg
    12001 ggggtcggtg gttcgagtcc actcggacgc accagatttt cttaatctgg tcttctcctt
    12061 tttccctctg tttcttctct gtatccaata cgttaaaaga tttacactgt cttcgtatgc
    12121 gttatcagaa ggagaatcgc tatggcaact ttgttacaac ttcattttgc ttttaatggc
    12181 ccatttggcg acgcaatggc tgagcagctt aaaccgcttg ctgagtcgat taatcaggaa
    12241 cctggttttc tgtggaaggt atggacagaa agtgaaaaga accacgaagc cggtgggatc
    12301 tatcttttta ctgatgaaaa aagcgccctt gcctatctgg aaaaacatac tgcccgactt
    12361 aaaaatctcg gcgttgagga agttgtcgcc aaagttttcg atgtcaatga gccactgagt
    12421 caaatcaatc aggcaaaact cgcctgacag aatttaatca agggcggtta gcgccctttt
    12481 catccctgtc tgaaatttct caaattctaa aaatctcaac caaacttatc tgataacact
    12541 aaattcgaaa gaatgcgtac aggtaagtaa caatgaaaaa aattgctatt gtgggtgccg
    12601 ggcctacggg gatctacacc ttattctcgc ttctacagca acaaactcca ctttctattt
    12661 ctatcttcga gcaggctgac gaggccggtg tcgggatgcc atacagtgat gaggaaaact
    12721 caaaaatgat gctggcaaat attgccagta ttgaaatacc gccgattaat tgtacgtatc
    12781 tcgaatggct acaaaagcaa gaagccagcc atctccagcg ttatggcgtt aaaaaagaaa
    12841 ccttgcacga tcgtcagttt ttaccgcgaa ttctgctggg cgaatatttc cgcgatcaat
    12901 ttttacgatt agtagaccag gcacgacagc aaaaatttgc agtggctgtt tatgaatcat
    12961 gccaggttac cgatctgcaa attacaaatg ctggcgtcat gctcgctaca aatcaggatt
    13021 tacccagcga gacgtttgat ttagcggtga ttgccacggg tcacgtctgg cctgatgaag
    13081 aagaagcaac cagaacgtat tttcccagtc cgtggtcagg cctgatggaa gcaaaggtcg
    13141 atgcgtgtaa cgtgggtatt atgggaacat ccttgagcgg actggatgcg gcaatggcag
    13201 tggctattca gcatggttcg ttcattgaag atgataaaca acacgtcgtt tttaaccgcg
    13261 ataacgcaag tgaaaagcta aatattacgt tgatgtcgcg cacgggtatt ttacccgaag
    13321 ccgatttcta ttgccctatt ccctacgagc ccttacacat cgtcaccgat caggcattaa
    13381 atgctgagat tcaaaaaggt gaagagggcc ttttggatcg ggtatttaga ttgatagtag
    13441 aggaaatcaa gtttgctgat ccagactgga gccaacgcat agccttagag agcctgaatg
    13501 tcgattcctt tgttcaagcc tggtttgccg agcgcaaaca acgcgaccca tttgactggg
    13561 cagaaaaaaa tctccaggaa gtcgaacgca ataaacgaga aaaacatact gttccctggc
    13621 gttatgtcat tctgcgcctg catgaagccg tacaggaaat tgttccacat ctgaatgaac
    13681 acgaccataa acggttcagt aaaggccttg cccgggtttt tatcgataat tatgcggcaa
    13741 tcccttcaga gtctattcgt cggctgctgg ccttacgtga agcggggatc attcatattc
    13801 tcgccctcgg tgaagactac gaaatggaaa ttaatgagtc gcgcaccgtc ctgaaaacgg
    13861 aagacaacag ctactcgttt gacgttttta ttgatgcccg cggacagcgt ccgcttaaag
    13921 tgaaagatat tcctttccct gggctacgcg agcaattaca gaaaacaggg gatgaaatcc
    13981 ctgatgttgg cgaagattat acgttacagc aacccgaaga tattcgtgga cgcgtagcgt
    14041 tcggcgcgtt gccctggttg atgcacgacc agcctttcgt tcagggactt acggcatgtg
    14101 cagaaattgg tgaggcgatg gctcgggcgg tcgtaaaacc tgcatcccgt gcacgtcggc
    14161 gtctttcgtt tgattaaagg taaagctatc agcactcaac aaactgatgc tgttcattaa
    14221 gacgatagcg gactccggtt cgaatattgt tttcaccttc aatggcgacg gcgaagcgaa
    14281 ctctttcgcc gtcatgatat gccagtgcgg cgcttccccc tgacccgaga ataattgagt
    14341 cgaccacgcc cgtgctcact accgttgaat tttcaccgct ggcaatgatg tgtacattgt
    14401 cgccgctgtt ggcaattctg gcgtttgcgc caaagctggc gatttgcacc aggtcaccat
    14461 tactggcgac atgacaccgt tcacccaatg tacaaacgcg tactcgcatt ccggtattcg
    14521 caatccgact actatctcca gcgctgctta tccgcgaaga attaccggtt acagcaaccc
    14581 gtgcgcgttc accggagctg ccaatgtgac tgttaaagcc gacacttcca atccgcacgc
    14641 tataacccat actggcaatt tgcgcggcat acccagcgat tgcgattcgg gcgttatcct
    14701 cacaacagcc gatgcgagca tgatcgtcgc tgcgggcaaa ctgactgcaa aatggtatct
    14761 ctccggggtc tgtggccagt ttttgcatag aggaaacttc ctgatgcgcg aagttttcat
    14821 ccgccagcca ttttttccac gcatactcaa ccagactctc cgcccagtcc gtatatcctt
    14881 cctcaatcag tgcatgatga atatcggcat aactaccgcc gcgtcggaaa tggcgcagga
    14941 accagcgata catcaccgct ccgatacgcc attctcgcag gtctgctcgt gtaatgatca
    15001 ttcgttagtg ccggtgatag ccatcgacca tgcttttaaa ggtttcgtgt ggcgtacgcc
    15061 ccgtggtgca aagataaaga tgtccgaaga taaaaaagag gcttataaat gccagagcaa
    15121 aatgcgcctg caataaccag tatcttacgc caggaaacac atctcccacg gcttgcggat
    15181 agagacacaa cagccccgtc aatagtaaca acggcagcaa tccatacatg acaccaacat
    15241 aggcgacctg ctgtaaggga ttaaatttag actgtgttgt tgccgggaaa ggatgttctt
    15301 ccccctgcat aatgccaaac aaataaaatc gcgtttgttt tgccgctcgt tccagccacc
    15361 cctgacgacg aatgcgatag tggtgaccat tatccccaac ggcattgatc agcacaaagc
    15421 cgagccagca tgccagtaac aaaaatccgc aaacttcatg caccgcaacc agacttttaa
    15481 ccgcagttgc gcccaccatc gcaaagtgat ttatcagccc acttgccagc aacaatacaa
    15541 agagtaacgc attcgaccag tgccataatc tgaccgcttt gctgtaaaga taaaccttct
    15601 caccatgatc ggtggctgat ttcttcacgc cacgagcacg aagcaaggcg tgcagcccca
    15661 gcaccaacca catcccaacc agcaatactc cggcaatgat caaccacacc ggccaaaatt
    15721 cgggagtgaa ctgtggcaca tagttcgcta actggctctg aaactgttca gcatgttgcg
    15781 acgggttcat acattttcct ttttaatcaa atgttgaccg aaccggcgat acagatgcgg
    15841 tttcccggca ccaggtagct gatattgata gtatttatta tcctgcaacc acgcctgaat
    15901 ttctgggcta tcttcgcgac caaagatcaa tgcgtgttcc ggacaggcgc tgacgcaaat
    15961 gggcggaaag ccttttgcca gtcgggactc agcgcagaaa tcacatttat ctgccacttt
    16021 agtgacaggg ttaaggtagc gaacctggta cggacaagcg ccaatgcaat aactgcagcc
    16081 gatgcactgc gatttttcta cccgcacgat cccctgctca tcacgccacg atgcccccgt
    16141 cgggcaaacg tcgatgcacg gagcatcttc gcagtgctga catgactggc gaaaaaagtg
    16201 atactgcgtt tcgttgtcgt tatcggtgac tggaatgtgt gctatcgata aacggcttcc
    16261 ctgagcgggg acgtggttag ttttacggca tgcgcgggcg caaatattac agccattgca
    16321 ccgtgactcg tcatgaatca tggcataccg aacttccttt tcttgcctcg tgttcgctaa
    16381 cagagaagac gcagaaccag taaaaaagat tactgttccc atccccagaa caaatttgcg
    16441 tcgagtgaag gacatctgat tatcccctaa tgcagtggct gcaactgtcc accctatcca
    16501 tgacatctcc ctgaaatttc aggggttctg aaactgctct acctcgaacc attcgcataa
    16561 gccataagcc ttgccatagg tcataaatcg ctcactaaac aagtacaact ccgccgtcga
    16621 tgactccacc tgccgtatat cggcatattc aggtgcaaca tccatcgcgg cgatcgcggc
    16681 ttcaatctgc gcttcctgga agtaatatgg cgcttgcatc agcatggcga ctttgtaagg
    16741 acgaggatat gtctggcact caaaacgaac ggcgtgtgca atggcgcgac aaatgtcctg
    16801 ctccacaact tgcaaagaca tcgccgcgta gttttcactc atggcctgcg ttgagtaata
    16861 gtaatcatcc tggcttcccg tcatacaagc gatatcagcg tagtctccgt tctgcttaat
    16921 gctttccagc aaaactgaca gctcctcttc tgcaaccgaa tagggtggcg agagaaacac
    16981 ggcgcgcgcc accagctgcc cagccgcaga atgctggcga atgaactctg ccaggatttc
    17041 agccggttct ggttcggtta ccgtatcaac ggggtgacgc atcccctgta accattgccg
    17101 cttcgcctcg tcaacttcgc tgactttcgc taacggcaat tcatcccgat ggttcatctc
    17161 acccattcct tacacaggca gtagattgtg tgctgccaga tcggcggcaa tatcttccag
    17221 ccccagacgc tgcaatgttt cgcgggtggg actaccaagc tgtgggtccc agcccatttc
    17281 tttgtagaac atcgtgagcg aagcatgcat atcgtcacga tccattttgt cagtaccttc
    17341 agtaaagacc gggatctgcg gatccttgtc gaatacccag gaacagataa gatcgtgttc
    17401 attacgcata tctttggttt gcataagttt taccgtgtag gcacgatgca acgtaaagat
    17461 acgctctgca gctaaatcta atttttcctg agtcatctct tcgccggtga tcgctttgaa
    17521 gaatttggct tcaagcgcca gatcgccccg gtaattacgg cttttcagcg gcgaaacggt
    17581 cattggccag acccagttac acagggtgac ggcgttatgc aaacagaccc gcaacagcga
    17641 ccacttagca tatttaattt ttgcgtcatt gattggcgtg tagtttttgg tttcatcgta
    17701 ggcatcttca gaaccaaaaa gctctttcgc cacttcacgt tgcagtttca atggcaagcc
    17761 ggaaccaata aagttgatat gggtatgtgt catgcagtca cggttgaaca tacagttaac
    17821 aatggaaccg acctgcgctg acgcttcatt ggcatggtga accggatagc caaacggcga
    17881 ccagagttta tttttcgcgt agccccagta ctcttcaccc aaattccagc gttctgcgat
    17941 ggcatatgaa ccatcagcca ggtgactcag ctcacccaca cgatgcgcca gacggtagta
    18001 aaaatcttta atgaaattaa cgtcacccgc ttccagttga tcccagtgaa tttccgcata
    18061 ctcttcagca ggcagaacac acttgaacac ccctttgctg taacaataag taaagtcgcg
    18121 atgcaactgc ccgtagttac accataggcc gtagtcatcg aacaaattca gaccaaccaa
    18181 gttaccaatc acacggccat cgtctttatc ttcaaaatct ttcggaccgt tcgggaagat
    18241 ggtggtatgg acaaagttgg ctacacaagt gttaccacct gtgctgggca cgccaaactc
    18301 tttcacccga ggaatattca tttgggtcat acaacggatc gggcaagagt ggcagccact
    18361 catttttact gtgtatttct ctgccgccgg acctaagtca aaaacggatt tataggtacg
    18421 aaagccgacc gtgttctgat tgcctggcgg aatttccccc gtttcaatcg gaccaccttc
    18481 agccgcgccc caaaacagcc ctttacgtgc tgtccaacgt gacttgggat ctgaatactc
    18541 tgcccacgat tgcggcgtac ttggcacgac atggttgtta ttcgcaccaa taagttcagt
    18601 catcatgtaa tcgttgagac gcttcatctc ctgacgatcg gcaatgttga cccctttcgt
    18661 cccttcaacc gcaatcgctt tcaggttttt cgaacccata attgcgccag ttcccgcacc
    18721 gccgctgtgg ttacggctat tcaacatgcc agagagagga acaaggtttt ccccagcctg
    18781 gccaatagcc gccacacagg tttccggact ggtcaatcga caaatttctt ccgtcgttgc
    18841 gcgcgtccct tttccccata agaaatcggc tttttccagg ctaactttgt catctttaat
    18901 cttcagccat accggtgatt tcgccttccc ttcgataata atgacgtcgt atccagcgaa
    18961 tttcatttgc gctgcaaaaa agccacccat atgggcatcg acaactaaat ttcctttggt
    19021 aaaagtagaa agtgaggtga tatttacgcg agaactacag ggggcaccag atccagttaa
    19081 tgggccggta gcaaagacta atttattcgc ttcatcgaaa ggtttcgtgc ctggcggtac
    19141 ttcgtcatac ataattttgt agccgaagcc catgccaccg acaaaacttt taaacttact
    19201 ggaatcttcg agggtaatat ttcctgtcgt gagattgact cttaatatat tacctgtcca
    19261 accgttagcc atgatttttt cctttgcaag attctcacag taatatcttt ccactcgata
    19321 atttttaacg cccctgttgg gcaggcgttt gcacattcac cgcataacac acatttcgag
    19381 gattttttac tttcggtatt tacggtggcc atcatccacg ggcatgccgt agtacaggcg
    19441 ctacagccaa taccgcgttt atgatcgacg gtaatacagc cttctttctg ctgccaggta
    19501 atcgcaccaa tcgggcagac gttcatgcat tgcggctctt tgcattgacg gcaggtgtcc
    19561 gcggtatagt tgagatcgcc atacaggccg ccgccagagc caaccccgtt gtcgccaaag
    19621 aaataattgc gatggatttt gatacgggag aagaatgtcc ctactgagcc atcgttgaag
    19681 ttggtacaag agatttcaca gcggtggcaa cccgtgcatc gcgctcgctg ggtcaccagc
    19741 acccctttgg gtgtatttat caaccctact gtgccgctat caatatcttc ctgtttgcaa
    19801 cccaaaagtg acagtaacgc aggggcaatt gttagaccag caaggccttt tcctgatata
    19861 cgcaagaatt ctaatcgcgt taagccaata tctaatagtg gacgatcaac cgggttcatt
    19921 tatttcgcat cctcttcgca aacacagtgc tgacaattca gcagcctgat attaagcatt
    19981 caattaatac gctgctgact ctgtccccaa caccagatat tttccctaac ccgatagtgt
    20041 atgagaaaag atttaacgcc gataaactaa tcctttatgg ttaggagaaa aaataatgtg
    20101 attattctga gcccttaaca ttgatcgtta tcaattaaaa ttacaaagca agaaattata
    20161 agtga
//
LOCUS       DAJVUP010000069        20116 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.069, whole genome shotgun sequence.
ACCESSION   DAJVUP010000069 DAJVUP010000000
VERSION     DAJVUP010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20116
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.069"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1988
                     /locus_tag="OQQ75_002237"
     CDS             <1..1988
                     /locus_tag="OQQ75_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="catecholate siderophore receptor Fiu"
                     /protein_id="HCS1976550.1"
                     /translation="GVGAFLAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRD
                     TFNTEQVEVIKGPSGTDYGHSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDV
                     NQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQH
                     NTPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHD
                     INDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKIL
                     TNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLT
                     RNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITC
                     PAGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQ
                     SGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQ
                     YGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTL
                     WSQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQL
                     NVYNLFDTDYVASINKSGYRYHPGKPRTFLLTANMHF"
     gene            2030..2707
                     /gene="ybiX"
                     /locus_tag="OQQ75_002238"
     CDS             2030..2707
                     /gene="ybiX"
                     /locus_tag="OQQ75_002238"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKHD-type hydroxylase YbiX"
                     /protein_id="HCS1976551.1"
                     /translation="MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQ
                     QVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVR
                     SHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV
                     TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENEEILSLLNLYHNL
                     LREWSEI"
     gene            2781..3047
                     /gene="ybiI"
                     /locus_tag="OQQ75_002239"
                     /pseudo
     CDS             2781..3047
                     /gene="ybiI"
                     /locus_tag="OQQ75_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308908.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc finger protein YbiI"
     gene            3312..3572
                     /locus_tag="OQQ75_002240"
     CDS             3312..3572
                     /locus_tag="OQQ75_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1976552.1"
                     /translation="MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG
                     ASTLDALEAKLTEKAAAAGASGYSITSATNNNKLSGTAVIYK"
     gene            complement(3800..4885)
                     /gene="hcxB"
                     /locus_tag="OQQ75_002241"
     CDS             complement(3800..4885)
                     /gene="hcxB"
                     /locus_tag="OQQ75_002241"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcXB"
                     /protein_id="HCS1976553.1"
                     /translation="MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAG
                     HDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGI
                     EKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRF
                     GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPA
                     VMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTII
                     INPELFGAPDCSAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGS
                     WQAICDAARQIGMSEETLQAFCQQLAS"
     gene            complement(5026..5988)
                     /gene="ybiB"
                     /locus_tag="OQQ75_002242"
     CDS             complement(5026..5988)
                     /gene="ybiB"
                     /locus_tag="OQQ75_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HCS1976554.1"
                     /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG
                     VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA
                     ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA
                     FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDI
                     GGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQ
                     WIERCLAGSEPIPESLKIQMACCLEATGEAATISDGLARVNQAF"
     gene            complement(6016..8166)
                     /gene="dinG"
                     /locus_tag="OQQ75_002243"
     CDS             complement(6016..8166)
                     /gene="dinG"
                     /locus_tag="OQQ75_002243"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HCS1976555.1"
                     /translation="MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG
                     EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK
                     IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK
                     GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE
                     VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL
                     DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEVEH
                     RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA
                     LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
                     SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFE
                     PSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGD
                     QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI
                     TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR
                     LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR"
     gene            8286..8768
                     /gene="ybiA"
                     /locus_tag="OQQ75_002244"
     CDS             8286..8768
                     /gene="ybiA"
                     /locus_tag="OQQ75_002244"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-glycosidase YbiA"
                     /protein_id="HCS1976556.1"
                     /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTW
                     PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRNRSKPLRKNWESVKEQVMRKALR
                     AKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK
                     "
     gene            complement(9000..10364)
                     /gene="rhlE"
                     /locus_tag="OQQ75_002245"
     CDS             complement(9000..10364)
                     /gene="rhlE"
                     /locus_tag="OQQ75_002245"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlE"
                     /protein_id="HCS1976557.1"
                     /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS
                     AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL
                     NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR
                     MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD
                     QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH
                     GNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG
                     RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ
                     QRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
                     AAAQ"
     gene            10593..11264
                     /gene="cecR"
                     /locus_tag="OQQ75_002246"
     CDS             10593..11264
                     /gene="cecR"
                     /locus_tag="OQQ75_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CecR"
                     /protein_id="HCS1976558.1"
                     /translation="MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNTTTREIAAQAGQN
                     IAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRA
                     CRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
                     NDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGL
                     SQRSL"
     gene            11267..12262
                     /gene="hlyD"
                     /locus_tag="OQQ75_002247"
     CDS             11267..12262
                     /gene="hlyD"
                     /locus_tag="OQQ75_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308900.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein HlyD"
                     /protein_id="HCS1976559.1"
                     /translation="MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTV
                     NLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLA
                     GYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
                     LKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRA
                     VEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQI
                     GFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGNEAGHE"
     gene            12255..13991
                     /locus_tag="OQQ75_002248"
     CDS             12255..13991
                     /locus_tag="OQQ75_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1976560.1"
                     /translation="MNDAVITLNGLEKRFPGMGKPAVAPLDCTIHAGYVTGLVGPDGA
                     GKTTLMRMLAGLLKPDSGNATMIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLN
                     LYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL
                     LLDEPGVGVDPISRRELWQMVHELASEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ
                     GEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPD
                     DIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKE
                     LTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMD
                     LKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGL
                     KSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE
                     KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQ
                     LIHDWDKEHSNE"
     gene            13984..15117
                     /locus_tag="OQQ75_002249"
     CDS             13984..15117
                     /locus_tag="OQQ75_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1976561.1"
                     /translation="MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG
                     YGINLDSSKLRVGILLEQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRG
                     LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT
                     FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS
                     TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL
                     GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV
                     STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD"
     gene            15128..16234
                     /locus_tag="OQQ75_002250"
     CDS             15128..16234
                     /locus_tag="OQQ75_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1976562.1"
                     /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE
                     VTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP
                     ADFSRKLDTFQTAPLQLILDGRNSNSAQIATNYLQQIVKNYQQELLEGKPKPNNSELV
                     VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI
                     FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS
                     LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK
                     DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM"
     gene            complement(16196..16606)
                     /locus_tag="OQQ75_002251"
     CDS             complement(16196..16606)
                     /locus_tag="OQQ75_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhQ family protein"
                     /protein_id="HCS1976563.1"
                     /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL
                     CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL
                     AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR"
     gene            16739..17490
                     /locus_tag="OQQ75_002252"
                     /pseudo
     CDS             16739..17490
                     /locus_tag="OQQ75_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
     gene            17487..18728
                     /gene="clsB"
                     /locus_tag="OQQ75_002253"
     CDS             17487..18728
                     /gene="clsB"
                     /locus_tag="OQQ75_002253"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HCS1976564.1"
                     /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE
                     DNVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNKLTAAGVVFRYYDPRPRLF
                     GMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDIL
                     QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIEPHYLKMLTQ
                     ARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK
                     GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD
                     NLNGIIAADCQQVDETMLPKRTWWNLTKSVLEFHFLRHFPALVGWHPAHTPRLTQVDP
                     PAQPTMETQDRVETENTGVKP"
     gene            18728..19684
                     /locus_tag="OQQ75_002254"
                     /pseudo
     CDS             18728..19684
                     /locus_tag="OQQ75_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
     gene            complement(19720..>20116)
                     /locus_tag="OQQ75_002255"
     CDS             complement(19720..>20116)
                     /locus_tag="OQQ75_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BAX inhibitor (BI)-1/YccA family protein"
                     /protein_id="HCS1976565.1"
                     /translation="IIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVII
                     VNAALMSERPIWVISCLVIVLWPGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALT
                     LYYYFIGFFGILAAIAITLVWQRHTRFFH"
BASE COUNT         4725 a         5448 c         5299 g         4644 t
ORIGIN      
        1 ccggcgtggg tgcgtttttg gcgggtgaga acggtaactc caccactggc gacgccattt
       61 atatgcgtgg tgccgatacc tctaacagta tttatattga tggcattcgc gatatcggca
      121 gcgtctcgcg cgacaccttc aataccgagc aggtcgaagt gattaaaggg ccgtccggca
      181 ccgactacgg gcacagcgca ccgacgggct cgatcaatat gatcagcaaa cagccgcgca
      241 atgattccgg cattgacgcc tccgccagta ttggcagcgc ctggttccgc cgcggcacgc
      301 tggacgtcaa tcaggtcatt ggtgatacca ccgcggtgcg cctgaatgta atgggcgaaa
      361 aaacgcacga tgccggacgc gacaaagtca aaaatgagcg ttacggcgtc gccccttctg
      421 tcgcttttgg ccttggtaca gcgaatcgtt tgtatcttaa ttatctgcat gtcacccagc
      481 acaacacgcc agacggcggc attccgacca tcggtttgcc gggctattct gccccatctg
      541 cgggaacggc ggccctgaat cattccggaa aagttgatac tcataacttt tacggcacgg
      601 attccgatta cgacgattcg accaccgaca ccgccaccat gcgttttgag cacgacatca
      661 acgataacac caccattcgc aatactaccc gttggtcgcg cgtaaagcag gattacctga
      721 tgacggcgat tatgggcggg gcgtcgaata ttactcagcc caccagcgat gtgaatagct
      781 ggacctggtc acgcacggcg aataccaaag atgtgagtaa taaaattctc accaaccaga
      841 ccaacctgac ctcgacgttc tataccggtt ctatcggtca tgatgtcagt accggcgtgg
      901 aatttacccg tgaaacgcag actaactacg gcgttaatcc ggtgacgtta cccgcggtaa
      961 atatttatca tcctgacagc agcattcatc ccggcggcct gacgcgcaac ggcgcaaacg
     1021 ccaatggtca gacggatacc ttcgcaattt acgcctttga tacgctgcaa atcacccgtg
     1081 attttgagct gaacggcggg atccgtctgg ataattatca tactgaatat gacagtgcca
     1141 ccgcctgcgg cggcagcgga cgcggtgcca tcacctgccc agctggtgtg gcaaaaggtt
     1201 ctccggtcac caccgtcgac accgccaagt cgggcaatct ggtgaactgg aaagccgggg
     1261 cgctgtatca cctgacggaa aacggtaatg tctatattaa ctatgccgtt tcccagcagc
     1321 ctccgggcgg caacaacttc gcccttgcgc agtctggcag cggtaacagt gccaaccgca
     1381 cagattttaa accgcaaaaa gccaacacca gcgagattgg caccaaatgg caggttctgg
     1441 ataaacgcct gttgctcacc gccgcactgt tccgtactga tatcgaaaat gaagttgagc
     1501 aaaatgatga cggaacttac tcgcaatacg gtaagaaacg tgtcgaaggc tatgagatat
     1561 ccgtggccgg gaatatcact cccgcgtggc aggtgattgg cggctatacc cagcaaaaag
     1621 caaccatcaa aaacggcaaa gatgttgccc aggatggttc ctcatcgctg ccgtataccc
     1681 cggagcacgc cttcacctta tggagccagt atcaggcaac cgatgatatc tctgttggcg
     1741 cgggcgcacg ctatatcggc agtatgcata aaggttcaga cggcgcggtg ggaacgccag
     1801 cgtttaccga aggttactgg gtcgccgatg ccaaactggg gtatcgggtt aatcgcaatc
     1861 tcgacttcca gctaaacgtt tacaacctgt ttgataccga ttacgtcgcc tcaatcaaca
     1921 agagcggcta ccgttatcac ccgggcaagc caagaacctt cttgctcaca gccaatatgc
     1981 atttctgatt cagatgtggg gcgcaggccc cactttttgg agaaattgta tgatgtacca
     2041 cattcccggc gtgttatcgc cacaggacgt cgctcgtttt cgcgaacaac tggaacaagc
     2101 cgaatgggtg gatggacgcg tcaccaccgg cgcacaaggt gcgcaagtta agaacaatca
     2161 acaggtagac acccgcagca cgttatacgc cgccctgcaa aatgaggtgc tgaacgcggt
     2221 taaccaacat gctttattct ttgccgcggc cttgccgcgt accctttcca cgccgctgtt
     2281 taatcgctat cagaacaatg aaacctatgg ttttcatgtg gatggcgcag tacgcagcca
     2341 tccacaaaac ggctggatgc gcactgacct ttctgccacg ctgtttttaa gcgatccaca
     2401 aagctacgac ggcggcgaac tggtcgttaa tgacaccttc ggacaacatc gggtaaaact
     2461 cccggcaggt gatctcgtgt tgtatccctc cagcagcctg cattgcgtga cacccgtaac
     2521 ccgcggcgta cgagtggcat catttatgtg gatccagtcg atgatccgcg atgataaaaa
     2581 gcgcgccatg ctgtttgaac tagacaaaaa tattcagtcg ctgaaaagcc gctatggtga
     2641 aaatgaagag atcctgtcgc tgctcaatct ttatcataat ctgctgcggg aatggtcgga
     2701 gatctgacgc ttgaactgcc caggttcgtc cctatattag ctacacttaa ctgtacaagc
     2761 attgatatgg ggaggacgat atggcatccg gttgggctaa cgatgacgcc gtcaacgaac
     2821 agatcaacag tacaattgaa gatgcgattg cccgcgctcg gggtgaaatt ccgcgtggct
     2881 aaagcctgta tgaatgtgaa gagtgcggtg cccccatccc gcaagcccgt cgggaagcca
     2941 ttcctggcgt gcgcttatgt attcattgtc agcaggagaa agatttacaa aaaccagcgt
     3001 atacaggata taatcgcaga ggttcgaaag acagccagtt acgttaacta caactggcga
     3061 gatgcatagc gagtataatt tgtattttgc gtggcattcc gtgcctttaa cgctgctgtg
     3121 actgccacgc ggcataaaac aagtccataa gtacaacaaa taaatggttt atcagtatgt
     3181 tagatgtcaa tcaatttatt tgaacaaggc ggtcaattct cttcgatttt atctctcgaa
     3241 aaaaaacgtg atactcatca catcgacgaa acaacgtcac ttatacaaaa atcacctgcg
     3301 agagattaat tatgaaaact atcaatactg ttgttgctgc tatggctctt tcaactctat
     3361 catttggcgt gttcgcggcg gaaccggtaa cggcatccca ggcacagaac atgaataaaa
     3421 tcggcgtggt ttctgccgat ggcgcatcca ccctcgatgc cctggaagcg aaactgactg
     3481 agaaagccgc ggcagccggt gccagtggat acagcatcac ttctgccacc aacaacaata
     3541 aattaagcgg tactgcggta atttataagt aattcgtagg acggataagg cgtttacgcc
     3601 gcatccggca acagatgcct gatgcgacgc taccgcgtct tatcaggcct acaaaatccg
     3661 aaccgttgga cggatcaggc ggttacgcta cgtccagcac aagtatttcc ctgtctgttt
     3721 gccgacagac gcatatgctc taaccctcat tgatcctata ttacccttgt ttgcccgtcc
     3781 gttactggac gggctttttt tagctggcta actgctgaca gaaagcctgc aacgtctctt
     3841 ccgacatacc aatctgccgc gccgcatcac aaatggcctg ccagcttccc gcatccaatg
     3901 gaatcccctg ctcctgccgt tcgcgacgcg tgttcacttc ccactcgccc ggtagcaaaa
     3961 tcggcttatc gtcatcatgc ggcgaggctt tcacccactc ggcaaaggct tcagtctgcg
     4021 cgctacaatc cggcgcgccg aacagttccg ggttgatgat gatagtggtc atgcagttaa
     4081 gaatggcatc gggactggtt tgtaacgttt cctgatgcgt cgttttaccg ccagaaagcg
     4141 ccccgccaag aatttcacac atcgctgcaa gggcgtagcc tttatgttcg gcaaaggtca
     4201 acagcgaccc caacggcgac tcctgcatta ccgccggatt ggtcgtcggc acgccgttaa
     4261 cgtcaatcag gcaacctggc ggcacgggga cgcctttatg ccaggcgacg cgagttttac
     4321 caaatgcgat ggcgctggtg gcgtaatcaa gcaacagcgg gaaattatct ttacgaggga
     4381 aaaccacaca gaacggattg gtgccaaagc ggctgtcgcg accgtggaac ggtgcgacca
     4441 ttggaatacc gaccacgcta acaaagtgga tagagacaaa ccccgccgct gcacactgct
     4501 ccgcccagta accgatacgg ccgatatgat gcgagttatg tagcgccacg gcagcaatac
     4561 cgtgctgatg cgctttctca atccccagcg ccatcgcttc gtgtgccgcg acctgaccga
     4621 atgcgcgatc gccatcgagc gtgactgccg cccccgcctc tttaacgatt ttggcatgat
     4681 ggttaatttg cagatgcccc tgactccagg aacgcacata gcttgggatc atgccaatac
     4741 catgagaatc atgccctgcc aggtttgccg cgattaaatg atcggccact aatttcgctt
     4801 cttgttcctc gctacccatc tgacgaaata cagcctgaat aaaactgtgc agcgtctgag
     4861 catcaaagcg atgaccactt tccatggtta actcctgttt atgttatgtg tttgttgttt
     4921 ttttatgctg cacgccgggc gcgggaaggt caataaagat gcaggaattt catattgcgg
     4981 tggggtaaaa gccggatgac atggctcatc cggctgagaa aagaattaaa atgcctgatt
     5041 aacgcgcgcc aggccgtcgc tgatagttgc cgcttcaccc gtagcctcca ggcagcaagc
     5101 catctggatt ttcagcgatt cgggaatcgg ttcgctgcca gcaaggcaac gctcaatcca
     5161 ctgcgccgtg gtttctgggt cttttgcttg tggcagtaac tcgctaccag cagtgtcctg
     5221 tttttcatac agcacccgca tcccttcacg gtcaatgaga ttgatctgcg ggcagcgctg
     5281 cggattagca tacacttcgc cttcagtacc atgcattagt agcgcccgcc cgccgatatc
     5341 gctaaagaac ttcgcgactc gcccgatgta ttccggatgc gaaacgctgg aaagacgcag
     5401 cgcctcacct tcggcaaatg gcgtcgccag tttcgccagg gtatgtgcac tgttacgcac
     5461 gcccatccgc cagcgcatcg ccagttgttt ttccagcggc gggcaaaacg cgccgacagg
     5521 cataaacacc ggttgatgtt cgtcgagctt cgcctgcgcc tgcccgccgt gcaacgttgg
     5581 tgtaataccc atcagttcga aaatggtttc tgtcagcacg cgagttggat cttcgctaac
     5641 cccgtgaacc accacaggaa aaccgagttt gtgcaggaga atagccaaca acggcgtcag
     5701 gttggcctgt ttacgcgcgc cgttgtaact ggggatgaca atcggcatcg gcttgcctgc
     5761 aggcggcgtc agcttgatgg tgtgattttg catggcttcg taaaagccga gcatctctgc
     5821 ttccccttcc cctttgatac gtagcgcaat caatacgccg cccaactcaa ggtcagggac
     5881 ttcaccattg agcatatggg catacagacc gcgcgcagta tcccggtcta aatcgcgcgc
     5941 gtggtttttc ccgcgcccga tctctttaat gattttgcga tagtccattt acgactcctt
     6001 acctgactca catcattaac gccgccgacg gcgtggggat ttcgtttttt ctttcttttt
     6061 aactatacct tcagggactt ccggttgctc tatcggaaat accggtaatg catccagtag
     6121 tcgcttgcca taatttttgg tcagcaagcg tttgtcgtag ataaccactt cgccccagca
     6181 accgtggctt cgaatcagtc gcccaacctg ctgaatcagg ttaaacgagg cgctcggcag
     6241 gctttgcacc tcaaacggat agcggttgag gcttttcagc cattcccctt cggtgatcac
     6301 caccgggctg tcgatgggcg gaaaagcgat tttgtggata tgcacctggc tgagcagatc
     6361 acctttcaaa tcaagccctt cggcaaatga ctgtaagccc accagcacac tacgctcacc
     6421 gttggcaacg cgtttgcggt gcagttcaac taagcgataa cgcggctgat cgccctgcac
     6481 cagcagcatc aggcgtaaat ccgtcacata gtcgagaaag cgctgcatcg cccgtccgct
     6541 ggcaaacagt accaacatac cgagatgttt tttgctctcc acctgctcac ggaaaaaggc
     6601 cgccatttcg gcaatatgct gctcttcgtt gtcgatggaa ggctcaaagc gcatccgggg
     6661 aataacaatt ttgccctgtt cgcagtggtt aaagggggaa tccagcgcca caaaacggtc
     6721 gcccgctttc tctttcagcc cgctcatctc ctgcaaacgc gaaaaactgt tcagcgaacg
     6781 caaggttgcg gaggtgacaa taatgtgcgg aatactgcgc cacagcagcc tttccagctg
     6841 atcgctgaca cgtattccca cgcagtgaaa ccagagatgc agctgccctt cgcgctcttc
     6901 ccgcgtcgcc catttggtca ccggcgcacc ggaagattgc gccagagacg ccagccgcca
     6961 gagtttgctt tgcgcctcga acatccccaa cgcgcggttc atctgcaaaa tcaaccgatg
     7021 cagacgcaca atatcgtggc tgccggtttt ctcacttaaa tcgttaagaa ataactccgc
     7081 cagaccacgc agcatctcgg tgagttttgc cagccgctgg cagatctcca gcacttcatc
     7141 aggcagttcg cccatcgcaa aacggtgctc tacctcctgc ccggcaggca tgtagagatt
     7201 gagaatgttg tttaacgagg cgataagctc atacaactct tcacaatgcg cattcaaacg
     7261 ttcagggatc gccagcggtg ggatggtctt cgggcgaaac tgctccatgc aggtagcgac
     7321 cagtttcgtg aacaagtcca gctgtagtcg ataccagggc gcggtgattt cagcgctcat
     7381 ctccagcgca tcccgggcca catctggcag gtgatgacct tcgtccagca ccagcagcag
     7441 atttttcggg tcaggcagta cggcttcgct ttccatcgcc gccatcacca gcgcatggtt
     7501 tgccaccacc acttccgctt cctgaatctc ccgacgagca acaaaaaacg ggcattcacg
     7561 atagtagtaa cagttacggt taaggcagct ggctttgtcg gtactcaaac gacgccagag
     7621 atcatcatct atagcgatat ccgtatgatc gcgcagacca tcccatttat aagtgtcgag
     7681 atcgcccttc agcttcgcac aacgtttttg ctcttcctga ttatttggcg tcagttcgtc
     7741 gtcaagaaac gccagcagat cctgttgcgt gggttcagtg ctggcgagcg ccgtcagatt
     7801 acgcggacaa acgtagcgcc cacgcccgaa agcggcagtg aatttaagat cgggaatgat
     7861 ctttttcagc agcggtaaat ctttgctgta aatctgatcc tgcaacgcca cgttggcggt
     7921 actcaccacc agcgtttttt gctcttcgcg ggcaatggcg atgccgggga tcaaatagga
     7981 gagcgttttc ccaacgccgg tgggggcttc aatcgccaga tgccgccctt cttctccggc
     8041 cagcgttttg gcgacgtccg caatcatctg ccgctgcggc gcacggggaa taaagtcggg
     8101 gatctgttcc tgaagcgcct tataccaagc ggcaatttgc gctttaagcg cggcggttaa
     8161 tgccatgaga aaacctgaaa tactgtataa acagccaata ttgtggcatt tttcggtttt
     8221 caggggtaat ggtttttctg tttctggaaa gcggctcgca ataaccacca acataatgcg
     8281 gtttaatgcc cgttcgagca caaaggatcc aacacgtcat gcaagacacc atcataaatt
     8341 tctacagcac cagcgatgac tacggtgatt tttctaactt tgccgcctgg cccatcaagg
     8401 ttgacgggaa aacctggccc acctccgaac actattttca ggcacaaaaa ttccttgatg
     8461 aaaaataccg cgaagagatc cgtcgggttt cttcccccat ggtcgccgct cgcatggggc
     8521 gtaatcgttc caagccactt cgtaaaaact gggagtcggt taaagaacag gtgatgcgta
     8581 aagcacttcg tgctaaattc gaacagcatg cagaactgcg tgcgctcttg ctggcaaccg
     8641 cgcccgcaaa actggttgag catacggaaa acgatgctta ctggggagac ggtggtaatg
     8701 gtaagggcaa gaatcgactg ggctaccttt taatggagtt gcgcgaacaa ttggctatag
     8761 agaagtaacg tctcggtggc ttatgggcgg taaaacagat aaattttttc ccgtgttctc
     8821 aaattgctga caagtgcttg ttgtgaaatg ccggatgcgg cgtaaacgcc ttatccggcc
     8881 tacaaaagca tgcaaattca atatattgca gagttaacgt aggcctgata agcgtagcgc
     8941 atcaggcagt tttgcgtttg ttcatcagcc tgatgccggg catagcccgg cataaaagat
     9001 tactgcgcag cggcaggttt acgcggacgg cggcgacgtt gttgttcgcc tgccggtttg
     9061 gcatcgccga ggcggcgaga cggtttttct gcaggtttcg cgcttgcaga ttttgcgcca
     9121 ccttccccac ggcgtggttg ctgttgaccg cgaccaccac cttgcccacg accgccgccg
     9181 ccacgttgct ggcgaccgtt ctggatcggt tcggctttga ttgacgggtc cggctcatag
     9241 cccggaatcg caatgcgcgg gatctctttt ttcagcagtt tttcgatatc acgcagcagt
     9301 ttgtgttcat caacacacac cagcgacaac gcttcaccgg tagcagccgc acgaccggta
     9361 cgcccgatac ggtggacata atcttccggt acgtttggca gttcatagtt gacgacgtgc
     9421 ggcaactctt cgatatccag accgcgcgca gcgatatcgg tcgccaccag tacgcgaatg
     9481 tcactcgatt taaaatcagc cagcgcacgg gtacgcgcac cttgcgattt attcccgtgg
     9541 atcgccgcac tacggatgcc atctttattg agctgctcag ccagatggtt agcgccgtgt
     9601 ttggtacggg taaacaccag cacctgctgc cagttccctt taccaatcat gtgcgacagc
     9661 aattcgcgtt tgcgtttctt atcgacaaag tgaacgtgct gggtcacctg atcagacgcg
     9721 gtattgcggc gtgccacttc gatttccagc gggttgtgca acagtttttc cgccagggct
     9781 ttaatatcgt cagagaaggt cgcagagaac agcaggttct ggcgtttcgc tggcagtttt
     9841 gttaacacgc gacggatatc gtggataaag cccatgtcga gcatgcggtc agcttcatcg
     9901 aggacgagga tttcaacctg atccagcttc actgcatttt gatgttccag gtccagcaaa
     9961 cgtcccggtg ttgccaccag aacatcaacg ccgccgcgca gcttcatcat ttgcgggtta
    10021 atgctgacac cgccaaacac caccagcgaa cgaatgttca aatatttgct gtaatcacgg
    10081 acgttttcgc caatctgcgc agccagttca cgggtcgggg taagaatgag cgcacgtacc
    10141 ggacgacgcc ctttggcgtg cggctggcga gtgatcaggt gttgcaacag cggcagcgta
    10201 aagcccgctg ttttaccggt accggtctgg gcgctagcca tcaggtcgcg gccttccagc
    10261 accgcaggga tcgcctgctg ctgaataggg gtgggttcac ggtaaccctg ctcggcaacg
    10321 gcgcgcagga tatcagggct taaacccaaa gaatcgaaag acataactac tccgaaccgc
    10381 cccgaccgtt accggtgtag ttttcaggga gatactgaaa aggaaaatga caaaaaccac
    10441 aatgtcatga gggagcggag tgtagcagtt tttgtgacgc agcgcataaa ttatccctgt
    10501 gactggcgtt gctaaaattc ttagccatac tggacaactc ccctatggag tcataatctt
    10561 aatcaatcat ttgattaaga atggactgtg cgatgaataa tcctgccatg acaatcaagg
    10621 gtgaacaggc gaaaaaacag ctgattgctg ccgcactggc gcagtttggt gaatatggaa
    10681 tgaacaccac cactcgcgag atagccgccc aggccgggca gaatatcgct gccatcacct
    10741 actacttcgg ttcgaaagaa gatttgtacc tcgcctgcgc ccagtggatt gccgatttta
    10801 ttggcgagca gttccgtccg catgccgagg aagccgaacg cttgttcgcg caaccacagc
    10861 ctgatcgggc tgccatccgt gaactgatcc ttcgcgcctg caggaacatg attaagctgc
    10921 tcacccagga tgacaccgtc aacctcagca agtttatctc ccgtgagcag ctctctccca
    10981 cggcagccta ccacctggtg cacgaacagg tgattagtcc gctacacagc cacctgacac
    11041 gcctgattgc cgcctggacc ggctgcgacg ccaatgacac ccgcatgatc cttcataccc
    11101 atgcgttgat tggtgagatt ctggcgttcc gtcttggcaa agaaacaatt ctgttacgta
    11161 ccggctggac cgcgttcgat gaagaaaaga ccgaactgat caaccagacg gtgacctgtc
    11221 atatcgacct gattttgcaa ggattatcgc aaaggagttt gtagtgatga aaaaacctgt
    11281 cgtgatcgga ctggcggtag tggtacttgc cgccgtggtt gccggaggct actggtggta
    11341 tcaaagccgc caggataacg gcctgaagct gtatggcaac gtggatattc gtacggtgaa
    11401 tcttagtttc cgtgttgggg ggcgcgttga atcgctggcg gtggacgaag gtgatgcgat
    11461 caaagcgggc caggtgctgg gcgaactgga tcacaagccg tatgagattg ccctgatgca
    11521 ggtgaaagcg ggcgtctcgg tggcacaggc gcagtatgac ctgatgcttg ccgggtatcg
    11581 cgatgaagaa atcgctcagg ccgccgcagc ggtgaaacag gcgcaagccg cctatgacta
    11641 tgcgcagaac ttctataacc gccagcaagg actgtggaaa agccgcacca tttcggcaaa
    11701 tgacctggaa aatgcccgct cctcgcgcga ccaggcacag gcaacgctga aatcagcaca
    11761 ggataaattg cgtcagtacc gttccggtaa ccgtgaacag gacatcgctc aggcgaaagc
    11821 cagcctcgaa caggcgcagg cgcaactggc gcaggcggag ctgaatttac aggactcaac
    11881 gttgatagca ccgtctgatg gcacactgtt aacgcgcgcg gtggagccag gcacggttct
    11941 caatgaaggt ggcacggtgt ttaccgtttc actaacgcgt ccggtgtggg tgcgcgctta
    12001 tgttgatgaa cggaatcttg accaggccca gccggggcgc aaagtgctgc tttataccga
    12061 tggtcgcccg gacaagccgt atcacgggca gattggtttc gtttcgccga ctgctgaatt
    12121 taccccgaaa accgtcgaaa caccggatct gcgtaccgac ctcgtctatc gcctgcgtat
    12181 tgtggtgacc gacgccgatg atgcgttacg ccagggaatg ccggtgacgg tgcaattcgg
    12241 taacgaggca ggacatgaat gatgccgtta tcacgctgaa cggcctggaa aaacgctttc
    12301 cgggcatggg caagcccgcc gtcgcgccgc tcgattgtac cattcacgcc ggttatgtga
    12361 cggggctggt ggggccggat ggtgcaggta aaaccacgct aatgcggatg ctggcgggat
    12421 tactgaaacc cgacagcggc aatgccacga tgattggctt tgatccaatc aaaaacgacg
    12481 gcgcgctgca cgccgtgctc ggctatatgc cgcagaaatt tggtctgtat gaagatctca
    12541 cggtgatgga gaacctcaat ctgtacgcgg atttgcgcag cgtcaccggc gaggcacgta
    12601 agcaaacttt tgctcgcctg ctggagttta cgtctcttgg gccgtttacc ggacgcctgg
    12661 cgggcaagct ctccggtggg atgaaacaaa aactcggtct ggcctgtacc ctggtgggcg
    12721 aaccgaaagt gttgctgctc gatgaacccg gcgtcggcgt tgaccctatc tcacggcgcg
    12781 aactgtggca gatggtgcat gagctggcaa gcgaagggat gttaatcctc tggagtacct
    12841 cgtatctcga cgaagccgag cagtgccgtg acgtgttact gatgaatgaa ggcgagttgc
    12901 tgtatcaggg agaaccaaaa gccctgacac aaaccatggc cggacgcagc tttctgatga
    12961 ccagtccaca cgagggcaac cgcaaactgt tgcaacgcgc cttgaaactg ccacaggtca
    13021 gcgacggcat gattcagggg aaatcggtac gtctgatcct caaaaaagag gccacaccag
    13081 acgatattcg ccatgccgac gggatgccgg aaatcaacat caacgaaact acgccgcgtt
    13141 ttgaagatgc atttattgat ttgctgggtg gtgccggaac ctcagaatcg ccgctgggtg
    13201 caatattgca tacggtagaa ggcacacccg gcgagacggt gatcgaagcg aaagaactga
    13261 ccaagaaatt tggtgatttt gccgccaccg atcacgtcaa ctttgccgtt aaacgtgggg
    13321 agatttttgg tttgctgggg ccaaacggcg cgggtaaatc gaccaccttt aagatgatgt
    13381 gcggtttgct ggtgccgact tccggccagg cgctggtgct ggggatggat ctgaaagaga
    13441 gttccggtaa agcgcgccag catctcggct atatggcgca aaaattttcg ctctacggca
    13501 acctgacggt cgaacagaat ttacgctttt tctctggtgt gtatggctta cgcggtcggg
    13561 cgcagaacga aaaaatctcc cgtatgagcg aggcatttgg cctgaaaagt atcgcctccc
    13621 acgcgaccga tgaactgcca ttaggtttta aacagcggct ggcgctggcc tgttcgctga
    13681 tgcatgaacc ggacattctg tttctcgacg aaccaacgtc cggcgttgat cccctcaccc
    13741 gccgcgaatt ttggctgcat atcaacagca tggtagagaa aggcgtcacg gtgatggtca
    13801 ccactcactt tatggatgaa gcagaatatt gcgaccgcat cggcctggtg taccgtggga
    13861 aattaattgc cagcggcacg ccggatgatt tgaaagcgca gtcggccaac gacgagcaac
    13921 ccgatcccac catggagcaa gcctttattc agttgatcca cgactgggat aaggagcata
    13981 gcaatgagta acccgatcct gtcctggcgt cgcgtacggg cgctgtgcgt taaagagacg
    14041 cggcagatcg ttcgcgatcc gagtagctgg ctgattgcgg tagtgatccc gctgctactg
    14101 ctgtttattt ttggttacgg cattaacctc gactccagca agctgcgggt cgggatttta
    14161 ctggaacagc gtagcgaagc ggcgctggat ttcacccaca ccatgaccgg ttcgccctac
    14221 atcgacgcca ccatcagcga taaccgtcag gaactgatcg ccaaaatgca ggcggggaaa
    14281 attcgcggtc tggtggttat tccggtggat tttgcggaac agatggagcg cgccaacgcc
    14341 accgcaccga ttcaggtgat caccgacggc agtgagccga ataccgctaa ctttgtacag
    14401 gggtatgtcg aagggatctg gcagatctgg caaatgcagc gagcggagga caacgggcag
    14461 acttttgaac cgcttattga tgtacaaacc cgctactggt ttaacccggc ggcgattagc
    14521 cagcacttca ttatccccgg tgcggtgacc attatcatga cggtcatcgg cgcgattctc
    14581 acctcgctgg tggtggcgcg agaatgggaa cgcggcacca tggaggctct gctctctacg
    14641 gagattaccc gcacggaact gctgctgtgt aagctgatcc cttattactt tctcgggatg
    14701 ctggcgatgt tgctgtgtat gctggtgtca gtgtttattc tcggcgtgcc gtatcgcggg
    14761 tcgctgctga ttctgttttt tatctccagc ctgtttttac tcagtaccct ggggatgggg
    14821 ctgctgattt ccacgattac ccgcaaccag ttcaatgccg ctcaggtcgc cctgaacgcc
    14881 gcttttctgc cgtcgattat gctttccggc tttatttttc agatcgacag tatgcccgcg
    14941 gtgatccgcg cggtgacgta cattattccc gctcgttatt tcgtcagcac cctgcaaagc
    15001 ctgttcctcg ccgggaatat tccagtggtg ctggtggtaa acgtgctgtt tttgatcgct
    15061 tcggcggtga tgtttatcgg cctgacgtgg ctgaaaacca aacgtcggct ggattaggga
    15121 gaagagcatg tttcatcgct tatggacgtt aatccgcaaa gagttgcagt cgctgctgcg
    15181 cgaaccgcaa acccgcgcga ttctgatttt acctgtgctt attcaggtga ttctgttccc
    15241 gttcgccgcc acgctggaag tgactaacgc caccatcgcc atctacgatg aagataacgg
    15301 cgagcattcg gtggagctga cccaacgttt tgcccgcgcc agcgccttta ctcatgtgct
    15361 gctgctgaaa agcccacagg agatccgccc aaccatcgac acacaaaagg cgttactcct
    15421 ggtgcgtttc ccggctgact tctcgcgcaa actggatacc ttccagaccg cgccgttgca
    15481 gttgatcctc gacgggcgta actccaacag tgcgcaaatt gccaccaact acctgcaaca
    15541 gatcgtcaaa aattatcagc aggaactgct ggaaggaaaa ccgaaaccta acaacagcga
    15601 gctggtggta cgcaactggt ataacccgaa tctcgactac aaatggtttg tggtgccgtc
    15661 actgatcgcc atgatcacca ctatcggcgt aatgatcgtc acttcacttt ccgtcgcccg
    15721 cgaacgtgaa caaggtacgc tcgatcagct actggtttcg ccgctcacca cctggcagat
    15781 cttcatcggc aaagccgtac cggcgttaat tgtcgccacc ttccaggcca ccattgtgct
    15841 ggcgattggt atctgggcgt atcaaatccc cttcgccgga tcgctggcgc tgttctactt
    15901 tacgatggtg atttacggtt tatcgctggt gggattcggt ctgttgattt catcactctg
    15961 ctcgacacaa cagcaggcgt ttatcggcgt gtttgtcttt atgatgcccg ccattctcct
    16021 ttccggttac gtttcgccgg tggaaaacat gccagtatgg ctgcaaaacc tgacgtggat
    16081 taaccctatt cgccacttta cggacattac caagcagatt tatttgaagg atgcgagtct
    16141 ggatattgtg tggaatagtt tgtggccgct actggtgata acggccacga cagggtcagc
    16201 ggcgtacgcg atgtttagac gtaaggtgat gtaacttctt atctttcgcc agcaaagaca
    16261 ctaccgccgg gccggcaagg attgccagcc ctgcaattgc cagcaaaaag ttgttttcca
    16321 gtacgcggga caacagccac agcacaatca gcgctgcgcc aaaataccag gtcgtggtca
    16381 gctcttccaa cacgtctgcc acctcacgcc agcgttgctc ggggtggcgc tgaaacacca
    16441 acatcatcac taccgtgaca caatacagtg cgcataatcc cacgccgacg tgaaccagag
    16501 tcttactcat ccagcccacc accagcagcg ccactaccag taaatgcaac ataatctgcc
    16561 agcaacttag acccgttgcg acacgaacac gttgttgcca cttcatggct tctctcctga
    16621 agaatttatc tctacttact cagagtaccg aactttacgg aaaattccgt aagaccgcac
    16681 ctttttgtga cgccgactac actatttcaa tgagataaga ggcaaagaca ggaaaattat
    16741 gcccgatcaa acacaacaat tttcgttcaa ggtgctcacc atcaacattc aaaaaggttt
    16801 taccgcgttt aaccgacgct tcattttgcc ggaacttcgc gacgcggtgc gtaccgtcag
    16861 cgccgatatt gtttgcctgc aggaagtgat gggcgcgcac gaagttcatc cgctgcatgt
    16921 ggaaaactgg cccgatacct cgcactacga gtttctcgcc gacactatgt ggagcgattt
    16981 tgcctacggt cgcaatgccg tatacccgga agggcatcac ggcaacgccg tactgtcgcg
    17041 ttatcccatt gaacattatg agaatcgcga tgtttcggtc gatggtgcgg aaaagcgcgg
    17101 cgtgctctac tgccgcattg tgccgccgat gaccggaaaa gcgattcatg tgatgtgcgt
    17161 acatctgggc ctgcgtgagg cgcaccgtca ggcgcagctt gcgatggggt gaatgagcta
    17221 ccggacggcg aaccggtatt ggtggcgggt gatttcaatg actggcggca aaaagctaat
    17281 catccgttaa aagtgcaggc cggactggat gagattttta cccgcgccca cggacgcccg
    17341 gcgcgcacgt ttccggtgca atttcctcta ctacgactgg acaggatcta cgtcaaaaat
    17401 gccagcgcca gcgcgccaac cgcgttgccg ctgcggacat ggcgacacct ttctgatcat
    17461 gcccctttaa gtgcggagat tcatttatga aatgtagctg gcgcgaaggc aataagatcc
    17521 agttgctgga aaacggcgag caatattatc ccgcggtgtt taaggcgatt ggcgaggcac
    17581 aagaacgcat cattcttgaa acgtttatct ggtttgagga taacgtcggc aaacagctgc
    17641 atgcggcact actggcagca gcgcaacgcg gggttaaagc ggaagtcttg ctggatggct
    17701 acggttcgcc ggatctcagc gatgagtttg tcaataaact gacggcagct ggcgtagtgt
    17761 tccgctacta cgatccccgc cctcgccttt ttggtatgcg caccaatgtg tttcgccgga
    17821 tgcatcgcaa aattgtggtg atcgacgcgc gtatcgcctt tattggcggg ctgaattact
    17881 ccgccgagca tatgtccagc tacggtccag aggctaaaca ggattacgcg gtacgccttg
    17941 aagggccgat tgtcgaagat attctccagt ttgagctgga aaacctgcct ggacagagcg
    18001 cggcacggcg ctggtggcga cgtcatcaca aagcggaaga gaaccgccag ccgggagaag
    18061 cgcaggtatt gctggtctgg cgcgataacg aagaacatcg cgatgatatt gaaccccatt
    18121 atctgaaaat gctcactcag gcgcggcggg aagtgattat cgccaacgcc tacttcttcc
    18181 ccggctatcg atttttacac gccttgcgta aagcggcacg gcgcggggtg cggatcaaac
    18241 tgatcattca gggcgaaccg gatatgccga ttgtcagagt cggtgcgcgc ttgctgtata
    18301 actatctggt taaaggcggc gttcaggttt ttgagtaccg ccgccgcccg ctccacggca
    18361 aagtggcatt gatggacgat cactgggcga cagtagggtc cagtaatctc gatccgctca
    18421 gtttgtcact gaatctcgaa gcaaatgtca tcatccacga tcgtcatttt aaccagacgc
    18481 tgcgcgataa tctgaacggc attattgccg cagattgtca gcaggtggat gaaaccatgc
    18541 tgcccaaacg cacctggtgg aacctgacca aaagcgtgct ggagttccac tttttacgcc
    18601 acttcccggc gctggttggc tggcatccgg cacacacacc acgtctgacg caggttgatc
    18661 cccccgcaca accgacaatg gaaacgcagg atcgggtaga aactgaaaac acgggggtaa
    18721 aaccctgatg agtaaatcac acccgcgcta gcgcttagca aagaagatcc tcacctggct
    18781 gttttttatc gcggtgattg tgttgctggt ggtctacgcc aaaaaagtgg actgggaaga
    18841 ggtctggaag gtcatccgcg actacaatcg cgttgcgctg cttagtgcgg tcgggctggt
    18901 ggtcgtcagc tatctgattt acggctgcta tgacctgctc gcccgctttt actgcggtca
    18961 caaactggcg aagcgccagg tgatgctggt gtcgtttatc tgctacgcct tcaacctgac
    19021 gctcagtacc tgggtcggcg gcattggtat gcgctatcgt ttgtactccc gactagggtt
    19081 accgggcagc actattacgc ggattttctc gctcagtatt accaccaact ggctgggcta
    19141 tattttactg gcagggatta tctttaccgc aggcgtggtg gagttgccgg atcactggta
    19201 tgtcgctcaa actacgctgc gtattctcgg cattggctta ctgatgatta tcgcggttta
    19261 tttgtggttt tgcgctttcg cgaagcaccg ccatatgacc atcaaagggc aaaagctggt
    19321 gctgccttca tggaaattcg ccctcactca gatgctgatt tccagcgtta actggatggt
    19381 aatgggggcg attatctggc tgttacttgg tcaaagcgtg aactatttct ttgtactggg
    19441 cgtgttactg gttagtagta ttgctggcgt catcgtgcat attccggcgg ggatcggtgt
    19501 gctggaagcg gtgtttatcg cactactggc tggggagcat acctcgaaag ggagcattat
    19561 cgccgcgctg ctcgcttatc gcgtcctgta ttactttatc ccgctgctgc tggcgctgat
    19621 ctgttacctg ctactggaaa gccaggcgaa gaagctacgg gcgaaaaatg aagcggcgat
    19681 gtgaaattta gttaagttct ttagtatctg cattcacgac taatgaaaaa aacgcgtatg
    19741 cctttgccag acaagcgtta tagctatcgc ggcaagtatc ccaaagaagc cgataaaata
    19801 gtaatagagt gttaatgcac ctgtaaaagc gcaacgaacc ggactccaca actcttcact
    19861 atggcatttt cctgccagtt caaggagctt atttcgtcca tgcgagataa tgcctggcca
    19921 taacacaatc actaagcaac ttattaccca aatgggccgt tcactcatta atgccgcatt
    19981 cacgatgatt accagggcca accctgtcaa cgtcatcata atgataaaac ggtgagaacc
    20041 aggatcaaca ttaaataata aaccggccag catactgatt aaaaacatcg cgcccgcagt
    20101 gctgaacaca atgata
//
LOCUS       DAJVUP010000070        20015 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.070, whole genome shotgun sequence.
ACCESSION   DAJVUP010000070 DAJVUP010000000
VERSION     DAJVUP010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20015
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.070"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..299
                     /locus_tag="OQQ75_002256"
     CDS             <1..299
                     /locus_tag="OQQ75_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1976566.1"
                     /translation="WDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWD
                     KVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASYSVTGFNL"
     gene            296..703
                     /locus_tag="OQQ75_002257"
     CDS             296..703
                     /locus_tag="OQQ75_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2509 family protein"
                     /protein_id="HCS1976567.1"
                     /translation="MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQS
                     LRRQAIVQSALAWGKMHSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSL
                     WRTGEVIDGNIVFSPSGWSDFCPLKERALCQLP"
     gene            688..1011
                     /locus_tag="OQQ75_002258"
     CDS             688..1011
                     /locus_tag="OQQ75_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS1976568.1"
                     /translation="MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASR
                     NQYQQLWRHGWQQTQLRAISPPANWQVNRLQTSQAGCVSISVTLVSPGGREGEMTRLH
                     CPNRQ"
     gene            1024..4392
                     /gene="recC"
                     /locus_tag="OQQ75_002259"
     CDS             1024..4392
                     /gene="recC"
                     /locus_tag="OQQ75_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HCS1976569.1"
                     /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ
                     WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL
                     LEHEDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLVEGLGE
                     AQAWQAPLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA
                     LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL
                     FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL
                     LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR
                     LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV
                     LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRLWVNESGIRWGIDD
                     DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS
                     LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL
                     GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND
                     GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGLSIQDNS
                     ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE
                     RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN
                     FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE
                     IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL
                     SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG
                     MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDNI
                     WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS"
     gene            4568..7456
                     /gene="ptrA"
                     /locus_tag="OQQ75_002260"
     CDS             4568..7456
                     /gene="ptrA"
                     /locus_tag="OQQ75_002260"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HCS1976570.1"
                     /translation="MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQY
                     QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP
                     QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE
                     RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL
                     KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG
                     IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE
                     GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL
                     ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT
                     PQNARIWYISPKEPHNKTAYFVDAPYQVDKISEQTFADWQQKAANIALSLPELNPYIP
                     DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFSSEPKADVSLILRNPKAMDSARNQ
                     VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY
                     FSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI
                     TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTQARDVQKQLGADGSEWCRNKDVVVD
                     KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG
                     YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTTEAKLRAMKPDEFAQIQQ
                     AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV
                     EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE"
     gene            7449..10991
                     /gene="recB"
                     /locus_tag="OQQ75_002261"
     CDS             7449..10991
                     /gene="recB"
                     /locus_tag="OQQ75_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HCS1976571.1"
                     /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL
                     GGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE
                     EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR
                     YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL
                     ASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE
                     TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE
                     IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ
                     QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA
                     PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES
                     CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ
                     VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN
                     ALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER
                     RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT
                     IHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPKSVDLAEVERLAED
                     LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC
                     IEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGH
                     GIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW
                     VQEKLELGGFESQWEPVLTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEP
                     LIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE
                     DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIYLFLRGV
                     DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA"
     gene            10991..12817
                     /gene="recD"
                     /locus_tag="OQQ75_002262"
     CDS             10991..12817
                     /gene="recD"
                     /locus_tag="OQQ75_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HCS1976572.1"
                     /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH
                     DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL
                     CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV
                     ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK
                     ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL
                     PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG
                     THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD
                     IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG
                     VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT
                     RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV
                     YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE"
     gene            complement(12879..14210)
                     /gene="argA"
                     /locus_tag="OQQ75_002263"
     CDS             complement(12879..14210)
                     /gene="argA"
                     /locus_tag="OQQ75_002263"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HCS1976573.1"
                     /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS
                     IVNDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAG
                     TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA
                     IHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD
                     GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL
                     LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI
                     DKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS
                     GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG"
     gene            14442..15695
                     /gene="amiC"
                     /locus_tag="OQQ75_002264"
     CDS             14442..15695
                     /gene="amiC"
                     /locus_tag="OQQ75_002264"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiC"
                     /protein_id="HCS1976574.1"
                     /translation="MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPA
                     SSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSAR
                     VGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED
                     YNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQI
                     ARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSG
                     SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK
                     FGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQ
                     QEVAESILAGIKAYFADGATLARRG"
     gene            15955..16107
                     /locus_tag="OQQ75_002265"
     CDS             15955..16107
                     /locus_tag="OQQ75_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HCS1976575.1"
                     /translation="MIIEKVMNNNCVQASVNGQEVIISGPGVGYNKNMVCRSLSILQT
                     GFLCQK"
     gene            16130..16777
                     /locus_tag="OQQ75_002266"
     CDS             16130..16777
                     /locus_tag="OQQ75_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HCS1976576.1"
                     /translation="MIEHVGIEYIFVAEKIVHYAESNLEKKLNPSLLLILADHISNAI
                     SRVVSGIQINNVFLEEIKALYKAEYAISRDALTIINEQFSVQLPDDEIGFIALHILNN
                     YENSVDYESVRIIELSQKITELIEVVYNRRVDRSSFNYSRFMMHLKYFSSRVLCNEKI
                     KQKNIGDIYEQFLEKDFQLQRAIHEIERYLYATFKYDLILEEKLYLSIRIKVLMD"
     gene            16809..18389
                     /locus_tag="OQQ75_002267"
                     /pseudo
     CDS             16809..18389
                     /locus_tag="OQQ75_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000810568.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            18389..19597
                     /locus_tag="OQQ75_002268"
     CDS             18389..19597
                     /locus_tag="OQQ75_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000382418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PatB family C-S lyase"
                     /protein_id="HCS1976577.1"
                     /translation="MDIFNTSISRKGTYCTQWDFCEDRFGVKDVLPFSISDMDLPIPE
                     AIIRTLKKRLEHPILGYSRWQHDDYLNSIVNWYHQQYKTEIQPEWITYSPSVMYSISK
                     AIEILTLNGDNILIFTPVYNAFFDVIKHNGRNMLTTSLMKENGRGYVINWQDFELKIK
                     SAKMVLLCNPHNPTGTVWSEDDLHRIAACCARHNIWLCSDEIHSDFVFNHSFTSALTI
                     KDDKVVVFNSISKTFNVPALTGSYMISTDDNFNHKFRTISRYRDFVNSPSVLNVIATI
                     VAYNECEEWLKSLKVHIASNIQFTLQYLNENIPELIVWPAEGCYFSWVDCSALGYPFD
                     KFYRRLINEGRVGIMAGHVYGTEGEGYLRLNLACSREKLYMGLARLASVIKNINQEKE
                     NEQYGSYPSY"
     gene            19566..>20015
                     /locus_tag="OQQ75_002269"
     CDS             19566..>20015
                     /locus_tag="OQQ75_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001683249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HCS1976578.1"
                     /translation="MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQG
                     KVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGE
                     TAEILATLPSLKKMGNYLISFIRSHHSSLAISCDLSVEIPVKSEADNL"
BASE COUNT         4961 a         4663 c         5343 g         5048 t
ORIGIN      
        1 agtgggatgc gaacagtaac ggtatctggg atcgcgaacc ggtaaaagag tccgaccaga
       61 ttggatttcg tctgaaggag catgtgctgg aaacgctacg cggtgcgaca tcctgtgaag
      121 gtaagggctg ggataaagtc actaatccgg atgccatcat tatcgacact tttcaggtcg
      181 tacgtcagga tgtcagcggc ttctcgccgg tgttgacggt taatatgcgt gctgccagta
      241 agtctgaacc gcaaaccgtg gtgaatgcca gctatagcgt gacaggattc aacctgtgaa
      301 ccgcgaaaag ggtgtttcgt cactggctct ggtcctgatg ctgctggttt tgggtagttt
      361 gctattacaa ggaatgagcc aacaggatcg cagttttgcc tctcgcgtga gcatggaaag
      421 tcagtcattg cgccgccagg ccatcgttca gtcggcgctg gcgtggggaa aaatgcactc
      481 ctggcagacg cagccagcag ttcagtgctc gcagtacgct gaaaccgatg cccaggtttg
      541 tttgcgttta ctggcagata atgaagcctt attgattgcc ggttatgaag gcgtttcgtt
      601 gtggcgaaca ggcgaagtca ttgatggaaa cattgttttt tcgccaagcg gctggagcga
      661 tttttgtccg ctgaaagaga gggcgttatg tcagcttccc tgaagaatca acaaggcttt
      721 agcctgccgg aggtaatgtt ggcgatggtg ttgatggtga tgattgtcac tgcgttatcg
      781 ggtttccagc gaacattaat gaacagtctt gccagcagaa accagtacca acagctctgg
      841 cggcatggct ggcagcaaac gcaactgcgc gcgatttcgc caccagctaa ctggcaggtc
      901 aaccgattgc agacatcgca ggcgggatgt gtcagcatca gcgttacgct agtttcaccc
      961 gggggcagag aaggcgagat gacccgcctg cattgcccga atcgtcagta gtcaggagcc
     1021 gctatgttaa gggtctacca ttccaatcgt ctggacgtgc tggaagcgtt gatggagttt
     1081 attgtcgaac gcgaacggct ggacgatcct ttcgaaccag agatgattct ggtgcaaagt
     1141 accggtatgg cacagtggct gcaaatgacc ctgtcgcaaa agtttggtat tgcggcaaac
     1201 attgattttc cgctgcctgc gagctttatc tgggatatgt tcgtccgggt gttaccggag
     1261 atccccaaag agagcgcctt taacaaacag agcatgagct ggaaactgat gactctgctg
     1321 ccgcaactgt tggagcacga agactttacc ctgttgcggc attatctgac tgacgatagc
     1381 gacaagcgaa aactgttcca gctttcctca aaagcggcgg acctgtttga ccagtatctg
     1441 gtctatcgcc cggagtggct ggcacaatgg gaaacaggac atttggttga agggctggga
     1501 gaagcacagg cctggcaagc gccgttgtgg aaggcgctgg tggaatatac ccatgaactc
     1561 ggacaaccgc gctggcaccg cgcgaatctc tatcagcgct ttatcgaaac gctggagtcc
     1621 gcgacgacct gcccgccggg gttaccttcg cgcgtcttta tatgcggtat ttccgcgtta
     1681 ccgcctgttt atctccaggc gctccaggcg ctgggtaaac atattgaaat ccatctcctg
     1741 tttaccaacc cctgccgtta ttactggggc gatattaaag atcctgctta tctggcgaaa
     1801 ctgctgactc gtcagcgtcg acacagtttt gaagatcgcg aattgccgct atttcgcgat
     1861 agcgaaaatg ccggacagct ctttaacagc gatggtgaac aggatgtcgg caacccgctg
     1921 ctggcctcat gggggaagct tgggcgcgac tacatttatc tcctttctga cctggagagc
     1981 agccaggagc tggacgcctt tgtcgatgtc acgccagata acctgctgca taacattcag
     2041 tctgacattc tggaactgga aaaccgtgcc gttgctggtg tgaacatcga agagttttcc
     2101 cgtagcgata acaaacgccc gcttgatcca ctggatagca gtatcacctt ccacgtttgc
     2161 catagcccgc agcgtgaagt tgaagttttg cacgatcgcc tgctggcgat gctggaagaa
     2221 gacccgacac ttactccgcg cgacatcatc gtgatggtgg ctgatatcga cagctacagt
     2281 ccgtttattc aggctgtgtt tggtagcgca cctgcggatc gttacctgcc ttacgccatt
     2341 tccgaccgtc gggcgcggca gtcgcatccg gtactggaag cgtttatcag cctgttatcg
     2401 ttgccagaca gccgctttgt gtcggaagac gtgctggcat tactggatgt gccggtgctg
     2461 gcggcgcggt ttgacatcac cgaagaaggg ctgcgttatt tacgcctgtg ggtcaacgaa
     2521 tccggcattc gttgggggat agatgacgac aacgttcgcg agctggaact ccccgccacc
     2581 ggacaacaca cctggcgatt tggcctgacg cgtatgttgc tgggctacgc gatggagagc
     2641 gcgcagggcg agtggcaatc ggttctacct tatgatgagt cgagcggctt aattgcagaa
     2701 ctggtggggc atctggcttc actgctaatg cagctaaaca tctggcgtcg cgggctggca
     2761 caggagcgtc cgctagaaga gtggttgccg gtttgtcgcg atatgctcaa cgccttcttc
     2821 ctgccggatg cggaaaccga agcggcgatg acgctgatcg aacaacaatg gcaggcgatt
     2881 atcgccgaag gtttaggtgc gcagtatggc gacgcggtgc cgctgtcact attgcgtgat
     2941 gaactggcac agcgtctgga tcaagaacgt atcagccagc gttttctcgc cggaccggtt
     3001 aacatttgta ctctgatgcc aatgcgttca attccgttca aagtggtttg cctgctggga
     3061 atgaacgacg gcgtttatcc acgtcagctt gcgccattgg gctttgacct gatgagccag
     3121 aaaccgaagc gtggcgaccg tagccgtcgc gatgacgacc gctacctgtt cctggaagcg
     3181 ttaatttccg cgcagcaaaa actctatatc agttatatcg ggctttccat tcaggataac
     3241 agtgaacgtt tcccgtcggt actggtgcag gaactgatcg actacatcgg gcaaagtcat
     3301 tatctaccgg gcgatgaagc gctcaactgt gatgaaagcg aggcaagggt aaaagcgcat
     3361 cttacctgcc tccatacccg gatgccgttt gatccacaaa actaccagcc aggcgaacga
     3421 caaagctatg ctcgtgaatg gctacctgcg gccagccagg ctggtaaagc acattctgaa
     3481 tttgttcagc cgctgccgtt taccttaccg gaaaccgtgc cgctggaaac gctacaacga
     3541 ttctgggcac atccggtgcg ggcatttttc cagatgcgtt tgcaggtgaa cttccgtacc
     3601 gaagacagcg aaatccccga caccgagcca tttattctgg aagggcttag ccgttatcaa
     3661 atcaatcagc agttattgaa tgcactggtt gagcaggatg atgccgaacg cttgttccgt
     3721 cgcttccggg cggcagggga tttaccgtat ggcgcttttg gtgaaatttt ctgggaaact
     3781 cagtgccagg agatgcagca gcttgccgac agagtcattg cctgtcgcca gccggggcag
     3841 agtatggaaa ttgatctcgc ctgcaacggt gtgcagataa ctggctggtt gccgcaggtg
     3901 cagccggatg gcctgttgcg ctggcgtccc tctttattaa gtgtggcgca gggaatgcaa
     3961 ctttggctgg aacaccttgt ctactgtgcc agcggtggta atggtgaaag tcgccttttt
     4021 ctacgcaaag acggcgagtg gcgttttccg ccgcttgcag ccgaacaggc tttgcattac
     4081 ctctcacaac tgattgaggg gtatcgtgaa gggatgtccg cgccattgct ggtgttacct
     4141 gaaagtggcg gcgcgtggct aaaaacctgt tatgacgcgc aaaacgatgc catgctggat
     4201 gacgattcca cgttgcaaaa agcccgtacg aaattccttc aggcttacga aggcaacatg
     4261 atggtgcgtg gcgaaggtga taatatctgg tatcaaaggc tctggcggca attaacacca
     4321 gagacaatgg aggccatcgt tgaacagtcg caacgtttcc tgttaccgct gtttcgcttt
     4381 aatcagtcat gagtgctgta taaaaattgc gcaatctatc cgcttacttt atgatgcgca
     4441 ccagtcacgg actgatggtt atataaacat aggctgactc gtgcagcaca agattaaatt
     4501 ctggcagatg atttgcgtta acgtgttgaa tctggacaga aaattaagtt gattatgagg
     4561 tccgtgaatg ccccgcagca cttggttcaa agcattattg ttgttagttg ccctttgggc
     4621 acccttaagt caggcagaaa cgggatggca gccgattcag gaaaccatcc gtaaaagtga
     4681 taaagataac cgccagtatc aggctatacg tctggataac ggtatggtgg tcttgctggt
     4741 ttctgatccg caggcagtta aatcgctctc ggcgctggtg gtgcccgttg ggtcgctgga
     4801 agatcccgag gcgtaccagg ggctggcaca ttaccttgaa catatgagtc tgatggggtc
     4861 gaaaaagtac ccgcaggctg acagtctggc cgaatatctc aaaatgcacg gcggtagtca
     4921 caatgccagc actgcgccgt atcgcacggc tttctatctg gaagttgaga acgacgcctt
     4981 gcctggtgcg gtagaccgcc tggccgatgc tattgctgaa cctttgctcg acaagaaata
     5041 tgccgaacgt gagcgtaatg cggtgaacgc tgaattaacc atggcgcgta cgcgtgacgg
     5101 gatgcgcatg gcacaggtca gcgcagaaac cattaacccg gcacaccccg gttcaaagtt
     5161 ttctggtggt aacctcgaaa ctttaagcga taaacctggt aatccggtgc agcaggcgct
     5221 gaaagatttc cacgagaagt actattccgc caatctgatg aaggcggtta tttacagcaa
     5281 taaaccgctg ccggagttgg caaaaatggc ggcggacacc tttggtcgcg tgccgaacaa
     5341 agagagcaaa aaaccggaaa tcaccgtgcc ggtagtcacc gacgcgcaaa agggcattat
     5401 cattcattac gtcccggcac tgccgcgtaa agttctgcgc gttgagtttc gcatcgataa
     5461 caactcagcg aagttccgta gtaaaacgga tgaattgatt acctatctga ttggtaatcg
     5521 cagcccaggt acactttccg actggctgca aaagcaggga ttagttgagg gcattagcgc
     5581 caactccgat cctatcgtca acggcaacag cggcgtatta gcgatctctg cgtctttaac
     5641 cgataaaggc ctggctaatc gcgatcaggt tgtggcggca atttttagct atctcaatct
     5701 gttacgtgaa aaaggcattg ataaacaata cttcgatgaa ctggcgaatg tgctggatat
     5761 cgacttccgt tatccgtcga tcacccgtga tatggattac gtcgaatggc tggcagatac
     5821 catgattcgc gttccggttg agcatacgct ggatgcagtc aatattgccg atcggtacga
     5881 tgctaaagca gtaaaagaac gtctggcgat gatgacgccg cagaatgcgc gtatctggta
     5941 tatcagcccg aaagagccgc acaataaaac ggcttatttt gtcgatgcgc cgtatcaggt
     6001 cgataaaatc agcgaacaaa ctttcgctga ctggcagcaa aaagctgcca atattgcgct
     6061 ctccttaccg gagcttaacc cctatattcc tgacgatttc tcgctgatta agtcagagaa
     6121 gaaatatgac catccagagc tgattgttga tgagtcgaat ctgcgcgtgg tgtatgcgcc
     6181 aagccgttat ttttccagcg aacccaaagc tgatgtcagc ctgattttgc gtaatccgaa
     6241 agccatggac agcgcccgca atcaggtgat gtttgcgctc aatgattatc tcgcagggct
     6301 ggcgcttgat cagttaagca accaggcgtc ggttggtggc ataagttttt ccaccaacgc
     6361 taacaacggc cttatggtta atgctaatgg ttacacccag cgtctgccgc agctgttcca
     6421 ggcattgctc gaggggtact ttagctatac cgctacggaa gatcagcttg agcaggcgaa
     6481 gtcttggtat aaccagatga tggattccgc agaaaagggt aaagcgtttg agcaggcgat
     6541 tatgcccgcg cagatgctct cgcaagtgcc gtacttctcg cgagatgaac ggcgtaaaat
     6601 tttgccctcc attacgttga aagaggtgct ggcctatcgc gacgccttaa aatcaggggc
     6661 tcgaccagag tttatggtta tcggcaacat gaccgaggcc caggcaacaa cgcaggcacg
     6721 cgatgtgcaa aaacagttgg gcgctgatgg ttcagagtgg tgtcgaaaca aagatgtagt
     6781 ggtcgataaa aaacaatccg tcatctttga aaaagccggt aacagcaccg actccgcact
     6841 ggcagcggta tttgtaccga ctggctacga tgaatacacc agctcagcct atagctctct
     6901 gttggggcag atcgtacagc cgtggttcta caatcagttg cgtaccgaag aacaattggg
     6961 ctatgccgtg tttgcgtttc caatgagcgt ggggcgtcag tggggcatgg gcttcctttt
     7021 gcaaagcaat gataaacagc cttcattctt gtgggagcgt tacaaggcgt ttttcccaac
     7081 cacagaggca aaattgcgag cgatgaagcc agatgagttt gcgcaaatcc agcaggcggt
     7141 aattacccag atgctgcagg caccgcaaac gctcggcgaa gaagcatcga agttaagtaa
     7201 agatttcgat cgcggcaata tgcgcttcga ttcgcgtgat aaaatcgtgg cccagataaa
     7261 actgctgacg ccgcaaaaac ttgctgattt cttccatcag gcggtggtcg agccgcaagg
     7321 catggctatt ctgtcgcaga tttccggcag ccagaacggg aaagccgaat atgtacaccc
     7381 tgaaggctgg aaagtgtggg agaacgtcag cgcgttgcag caaacaatgc ccctgatgag
     7441 tgaaaagaat gagtgatgtc gccgagacac tagatccttt gcgcttgccc ttacagggtg
     7501 agcgcctgat tgaagcctct gccggcacag gcaaaacctt tacgattgcg gcgctctatt
     7561 tgcgcctgtt acttggacta ggcggttccg ccgcctttcc ccgcccgctg accgttgaag
     7621 aactgctggt ggtcaccttt accgaggctg ccacggcaga attgcgtggt cgtatccgta
     7681 gcaatatcca tgagttgcgc atcgcctgtc tgcgtgaaac taccgacaat ccactgtacg
     7741 aacgtctgct ggaagagatc gacgataaag cgcaagccgc gcagtggttg ttgttagccg
     7801 aacggcagat ggatgaagcg gcagtcttta ctattcacgg tttttgccag cgcatgctca
     7861 acctgaatgc ctttgaatcc ggcatgctgt ttgagcagca gctgattgaa gatgagtctc
     7921 tgctacgtta ccaggcctgc gccgatttct ggcgtcgcca ctgctacccg ctgccgcgtg
     7981 aaatagccca ggtcgtcttt gaaacctgga aagggccgca ggcgttgctg cgcgatatta
     8041 atcgttatct gcaaggcgaa gcgccggtta tcaaagcacc gccgcccgat gatgaaacgc
     8101 tggcttcccg ccacgcgcaa attgtggcgc gtattgctac ggtaaaacag cagtggcgcg
     8161 acgcagtggg tgaactggat gcgctgatcg aatcttctgg tattgatcga cgcaagttta
     8221 accgtagcaa tcaggctaaa tggatcgaca agatcagcgc ctgggcagaa gaagagacca
     8281 acagttatca gttgccggag tcgctggaaa aattctccca gcgtttctta gaagatcgca
     8341 cgaaagctgg gggggaaacc ccgcgacatc cactgtttga ggcgatcgat caactgcttg
     8401 cagaaccatt gtcgatccgc gatctggtga tcacccgcgc attggctgag atccgcgaaa
     8461 cagtagcgcg tgaaaaacgc cgccgtggcg aattgggttt tgatgacatg ttaagtcggc
     8521 tcgattccgc gctgcgtagc gaaagcggtg aggtgttggc agcggcgatc cgtacgcgat
     8581 tcccggtggc aatgatcgat gaatttcagg ataccgaccc ccagcagtac cgaatttttc
     8641 gccgtatctg gcaccatcag ccggaaaccg cattgttgct gattggcgac ccgaagcagg
     8701 ccatatatgc attccggggt gcggatatct tcacttatat gaaggcgcgt agtgaagttc
     8761 acgcccacta cactttagac accaactggc gctccgcacc tggaatggtg aacagtgtga
     8821 acaagctttt cagccagact gatgacgcgt tcatgtttcg cgaaataccg tttattccag
     8881 tgaaatcagc cgggaaaaat caggcgttac gttttgtatt taaaggtgaa acgcagcctg
     8941 cgatgaaaat gtggctgatg gaaggcgaaa gctgcggcgt tggcgactat caaagtacca
     9001 tggcgcaggt atgtgctgcg caaatccgcg actggctaca agccggacag cggggcgaag
     9061 cgttgctgat gaacggcgac gacgcgcgtc cggtgcgtgc ttcggacatc agtgtgctgg
     9121 tgcgcagccg ccaggaggcc gcccaggtgc gcgatgcctt aacgttgctg gaaatccctt
     9181 ccgtttacct ttcgaaccgc gacagtgttt ttgaaactct ggaagcgcag gaaatgcttt
     9241 ggttattgca ggcggtgatg acgcccgaac gtgagaacac cctgcgtagt gcgctggcaa
     9301 cgtcaatgat ggggctgaac gcgctggata tcgaaacgct gaataatgac gaacatgcgt
     9361 gggatgcggt agttgaagag ttcgatggtt atcggcaaat ctggcgcaaa cgtggcgtta
     9421 tgccgatgct gcgggcgctg atgtcggcgc gtaacattgc agaaaacttg ctggcaacgg
     9481 caggcggtga gcggcgtctt accgatatct tgcatatcag cgaactgcta caagaagccg
     9541 gaacgcagct ggaaagtgaa catgcgctgg tacgctggtt atcgcaacat atcctcgagc
     9601 cagacagtaa tgcctccagc caacaaatgc gcctcgaaag tgataaacat ctggtgcaga
     9661 ttgtcacgat ccataaatcg aaagggctgg aatatccgct ggtctggttg ccatttatta
     9721 ccaatttccg cgtccaggat caggcgtttt atcacgatcg ccactcgttt gaggcagttt
     9781 tggatcttaa tgctgcgcca aaaagcgtcg acctcgcgga ggtcgaacgt ctggcggaag
     9841 atctgcgttt gctttacgtg gcgctgacgc gttcggtttg gcattgcagt ctcggcgttg
     9901 caccgctggt gcgccgtcgt ggcgataaaa aaggtgacac cgacgtccac caaagtgcgc
     9961 tcgggcgttt gctgcaaaaa ggggaaccgc aagatgcggc agggcttcgc acctgtattg
    10021 aagcgttatg cgatgatgat attgcctggc aaacggcaca aactggtgat aaccagccct
    10081 ggcaggttaa tgatgcttta actgcagaac tgaatgcgag gacactacaa cgattgcccg
    10141 gcgataactg gcgtgtcacc agctactccg gcttgcagca gcgtggtcac ggtatcgctc
    10201 aggatctgat gccacggctg gatgttgatg ccgcaggcgt ggtcagcgtc gttgaagaac
    10261 cgacgttaac accgcatcag ttcccgcgcg gtgcgtcacc ggggacattc ttgcacagtt
    10321 tgtttgaaga cctcgatttt acccagccgg ttgacccgaa ctgggtacag gaaaaactgg
    10381 aactcggcgg ctttgaatcg cagtgggaac cggtgttgac cgagtggatc acggctgtcc
    10441 tccaggcacc tctcaatgaa aagggggtta gcctgagtca gctttccgac cgcgataaac
    10501 aggtggagat ggagttttac ctgccgatta gcgaaccgct catcgccagc cagcttgatg
    10561 cactaattcg ccagtttgat ccgctatccg ctggctgccc gccgctggag ttcatgcagg
    10621 tacgcggcat gttaaaaggc tttatcgacc tagtattccg ccacgaaggg cgttattacc
    10681 tgctcgacta taaatccaac tggctgggtg aagacagttc ggcttacacc caacaggcta
    10741 tggcagcagc gatgcaggca caccgctatg atctgcaata tcagctttat accctggcgc
    10801 tgcatcgtta tctgcgccat cgcattgctg attacgacta tgatcgtcac tttggcggcg
    10861 ttatctatct gttcctgcgt ggcgttgata aagaacatcc gcaacaaggg atttacacaa
    10921 cccgacccaa cgccgggttg attgccctga tggatgagat gtttgccggt atgaccctgg
    10981 aggaggcgta atgaaattgc aaaagcaatt actggaagct gtggagcaca aacagctacg
    11041 cccgctggat gtgcaatttg ccctgaccgt ggcgggagat gaacatcctg ccgtcaccct
    11101 cgcggcggca ctgttaagtc atgatgccgg agagggacac gtctgtttgc cgctttcacg
    11161 actggaaaat aacgaggcgt cgcatccgct gttggcgacc tgtgtcagtg aaatcggtga
    11221 gctacaaaat tgggaagaat gcttgctggc ttctcaagcg gtcagcaggg gagatgaacc
    11281 cacgccgatg atcctctgtg gcgatcgtct ttatttgaat cgcatgtggt gtaacgagcg
    11341 gacggtagcg cgcttcttca atgaggtgaa tcatgccatt gaggttgatg aagctctact
    11401 ggcgcaaacc ctggacaaac tttttccagt aagcgatgaa attaactggc aaaaagttgc
    11461 agcggcagtg gcgctgacgc ggcggatctc ggtgatttcc ggcggcccag gcaccggtaa
    11521 aacgaccacc gtggcgaagt tgctggcagc gttaattcaa atggccgacg gcgaacgctg
    11581 ccgtatccgt ctggctgcac caacgggtaa agctgccgcg cgcttaaccg aatctctcgg
    11641 caaggctttg cgacagttac cgctgaccga tgaacaaaag aaacgcattc cggaagatgc
    11701 cagcactttg caccgattgc tgggcgcgca gccgggtagc cagcgtttac gtcatcatgc
    11761 cggtaacccg ctgcatcttg atgtgctggt ggtagatgaa gcgtcaatga tcgatctgcc
    11821 tatgatgtcg agactgatcg acgccttgcc cgatcatgcg cgagtgatct ttctcggcga
    11881 tcgtgatcaa ctggcctcgg ttgaggctgg ggctgtgctg ggcgatatct gcgcttatgc
    11941 caacgcgggc tttaccgccg agcgtgccag gcagctaagc cgcctgacgg ggactcacgt
    12001 tccggcagga accggcacag aagcggcatc tttgcgcgac agtctctgcc tgctgcaaaa
    12061 aagctatcgt ttcggcagcg attctggcat tggtcagtta gctgcggcga tcaaccgtgg
    12121 tgataaaacg gcagtgaaaa ccgtttttca gcaggatttt actgatatcg aaaaacgact
    12181 tttacagagc ggcgaagatt atattgcgat gcttgaggaa gctcttgcgg gttatggacg
    12241 ttatctggat ctgctgcaag cgcgtgccga gccggattta atcattcagg cgttcaatga
    12301 gtaccaactt ttgtgcgccc tgcgggaagg gccgtttggc gtggctggac tgaatgagcg
    12361 aattgagcag tttatgcaac agaagcgcaa aattcatcgt catccgcact ctcgttggta
    12421 cgaaggtcga ccggtgatga ttgcccgtaa tgacagcgcg cttgggttgt ttaatggcga
    12481 tatcggtatt gcgctggatc gcgggcaggg gacgcgcgtc tggtttgcga tgccggacgg
    12541 caatattaag tctgtgcaac cgagtcgctt gccagagcac gaaactacgt gggcgatgac
    12601 ggtacataaa tcgcagggat cggagttcga ccatgcggcg ttgattttac cgagccaacg
    12661 cacgccggta gtaacgcgag agctggtata caccgcggtg acccgcgcgc gtcgccgtct
    12721 gtcgctgtat gccgatgagc gtatattaag tgcggcaatc gccactcgta ctgagcggcg
    12781 cagtggtctg gcggcgttgt ttagttcgcg ggaataaacg taattgccgg atgcgatgca
    12841 cgagtgttac gcatgtcgca tccgacaatt ttcatcgctt accctaaatc cgccatcaac
    12901 actttggatt tacgctggta gttgtacaac tgctttttgc tctcgggcag taaatcaata
    12961 tccaccgggg taaatccacg ttcctggaac cagtgaatac tgcgcgtggt cagcacaaac
    13021 aatttgctta agccgctctg cttcgcctga gcggcaatgc gttccagcag aacctcgccc
    13081 cgtgatgaac tgcggtaatc cgggtgaact gccacacagg ccatttcccc aatcttctct
    13141 tccgggaacg gatagagcgc ggcgcaggca atagtcgtgt tatcgcgctg aataatggtg
    13201 aatttgtcga tttccatctc cagctgctcg cgagaacggc gcaccagaat accttgctgc
    13261 tccagcgggc gaatcaactc cagaataccg ccaatatcgt tgattgttgc gcgacgaatc
    13321 tgctcggcgc tttccatcac aatctgcgta ccgataccgt cgcgtgagaa caactcttgc
    13381 aacagcgcgc catcttcctg ataactgatt aaatgacagc gacgcacgcc gctgcggcag
    13441 gctttcactg cgccacgcaa aaagcgcacc gtaccggagt tgtaatcgcc tttctcttcc
    13501 tgggcttcta cccgcgcttg cgcttcgtta gggaaaagtt ctgagacaat atcaccgtcg
    13561 tcattagtga cgccctgtga agagcaaaaa ccaatcatct tctcagcttt cagtttgatg
    13621 gccagttgag tggcaatctc ttccgaggtc agattaaagc tctcgccagt gactgaaaca
    13681 gcgaccggcc ccattagcac tattgcaccg ctgtccagtt gacgatggat cgcgtcttca
    13741 tcaatccgcc ggatacgccc gctatggcag taatccacgc cgtcatcgac gcccagcggc
    13801 tgggcaataa taaaattgcc actgacgacg ttgatatgcg cgccctgtag cggcgtgtta
    13861 ttgagactca tcgacaggcg agcagtgatg tccagttgca atgttcccgc agcctgcttc
    13921 accagttcca gtgttttggc gtcggtcaca cgtatattct tgtgatacag cggttcgtgg
    13981 tgatgcgcgg ccagatttgc gtcgatctgc ggacgtgcgc catagaccac caccagacgg
    14041 atgccgaggc tgtgcaacaa cccgatatca ttaacgatac tggagaaatt ctcatgctca
    14101 atggcttcac cgccgagcat gatgacaaac gtttttcccc ggtgggtatt gatataggga
    14161 accgaatggc ggaatccctc gaccagctcg gttttacgtt cctttaccac ggcacacccc
    14221 tttgcatgat tattctaaat tagtgtattt ttattctgtt ttttcgcagg gtgcaagtgt
    14281 aaattttatg cgagagcgac ttttttatca gtaatgccgt gaatataaaa agaatgttta
    14341 ccgtttatta gatgacagat tatgcgtctt tcgctaaagt ttccggtcaa attagtcgtt
    14401 tacttgttac acagcttaga tttcttttgc tcgggagagg catgtcagga tccaacactg
    14461 caatcagccg tcgtcgttta ctgcaaggcg cgggtgccat gtggctattg agcgtaagtc
    14521 aggtcagtct ggctgcggtc agccaggtcg tggcggtgcg cgtctggcct gcgtccagct
    14581 acacccgtgt gacggtagaa tcaaatcgtc agctgaaata taagcagttc gcgttgagta
    14641 accctgaacg cgtggtggtg gatatcgaag atgtaaacct gaactcggta ctcaagggga
    14701 tggcggcaca aattcgtgca gacgacccgt tcatcaagtc ggcgcgcgtc gggcaatttg
    14761 acccgcagac cgtacggatg gtttttgaat taaagcaaaa cgtaaaaccg cagctgtttg
    14821 cccttgcgcc ggtcgccggg tttaaagagc gtctggtgat ggacctctat ccggccaatg
    14881 cacaggatat gcaggacccg ctgctggcgc tgctggagga ttacaacaaa ggcgacctcg
    14941 aaaagcaggt gccgccagca caaagtggtc cacaaccggg taaagcaggg cgcgatcgtc
    15001 ctattgttat tatgcttgac cctggccacg gcggcgaaga ctccggtgcg gtggggaaat
    15061 acaaaacgcg cgaaaaagac gtggtattgc aaatagctcg ccgtctgcgc tctctgatcg
    15121 agaaagaggg caatatgaag gtgtacatga cgcgcaatga agacatcttc attccgttgc
    15181 aagtgcgcgt agcaaaagcc cagaaacagc gtgctgacct gtttgtctct atccatgccg
    15241 acgcctttac cagtcgtcag ccgagcggtt cctctgtgtt tgcgctctca accaaaggtg
    15301 caaccagtac tgcggcaaaa tatctggcac aaacccagaa cgcctcggac ttgattggtg
    15361 gcgtgagcaa aagcggtgac cgctatgtcg accacaccat gttcgatatg gtgcagtcgc
    15421 tgaccattgc cgacagcctg aagtttggta aagcggtact gaataagctc ggtaaaatca
    15481 acaagctgca taaaaatcaa gttgaacagg ccgggtttgc cgtactaaag gcaccagata
    15541 ttccctccat tctggtcgaa acggcgttta ttagtaacgt tgaggaagag cgtaaactga
    15601 aaacggcgac tttccagcag gaagttgcgg agtctattct tgcggggatt aaagcgtatt
    15661 ttgccgatgg ggcgacgctg gcgagaaggg gatgatgttt ttaatttatt caatgaattt
    15721 atgtttcatt gaataaatat tatttacata aatgttgaac gatggttttg tgactgctgt
    15781 cgaatatttg aatatcggct taaaaaataa gtctgtcatc tcttttatta agcacaattc
    15841 cgtgtaaggt atacgcatta gttaattatc ttgcaactgt taaatcaggc aaggcaatgt
    15901 ttgaagtaat tattacttct gacatgcctt gccttttttt tggggagcca tggaatgatc
    15961 atcgaaaaag tcatgaacaa taattgtgta caggcatcgg tgaacggaca ggaggttatc
    16021 atttctgggc ctggcgttgg ttacaataaa aatatggtat gtcggtccct gagcatcctg
    16081 caaaccggat ttttatgtca gaaatgagca aaaaaataaa ctctacaaat tgattgagca
    16141 tgtgggtatt gagtatattt ttgttgccga aaagatagtg cattatgcgg agagtaatct
    16201 cgaaaaaaaa ctcaatccat cgctactact gattcttgct gatcacattt cgaatgcaat
    16261 atcccgagtc gtctcaggca tacaaattaa taatgttttc cttgaggaaa tcaaagcgtt
    16321 gtacaaagca gagtatgcaa taagtcgtga tgcattaaca atcattaatg agcaatttag
    16381 cgttcaacta ccggatgatg agattggttt tatagcattg catattttaa ataattatga
    16441 aaattcagtt gattatgaat cagtaaggat tattgagctg tctcaaaaaa tcacggagct
    16501 tattgaagtt gtttataaca gaagggtgga cagaagttca tttaactact ccagatttat
    16561 gatgcacctt aaatattttt ctagtcgtgt gttatgtaat gaaaaaataa aacagaaaaa
    16621 tattggtgat atctatgagc agtttcttga aaaagatttt cagttacaac gtgccattca
    16681 tgaaattgaa agatatctgt acgcaacttt taaatatgat ttgattctgg aagagaaact
    16741 atatctttct attcgcatca aagtattaat ggactaatta tacataacat tttcatgaga
    16801 taaccagtat gaaacaaaag aaatcctgga gtttttttca gagcctgggg aaggcattta
    16861 tgtatcccat cgctctgtta agtgtatgtg gtatgatgtt agggctggga agtggtttag
    16921 ccagcgatga tatggcaaaa ttcattccag tgttggctat tccgttaatt aaaaccatac
    16981 ttgattttat tgttagcctt ggtttgtttg ccttcgttaa tttacctgta ttgtttgcga
    17041 tagctatacc tttgggatta ttaaaagaga aagatgataa agcctatggc gctttttctg
    17101 gcttaattgg ctttatggcg atgcatcttg gaacgaactt ttatcttaaa cagcacgact
    17161 tattggtagc tgctgaccaa atgtcgacac atgggcaaac catcatactc gggatccagt
    17221 cctacaatac cagcgtgttg ggtgggattg tggcagggtt attagtcgcc agcatgtata
    17281 aaaagatcgt taacttacgt attcctgaat aattagggtt ttatagtggc ccacgccttg
    17341 tgcctatcat tacactgatt gtgatgagtg gatttggtct gatcattcct tttatctggc
    17401 cgccattttt caatcttttc atgctcattg gtcactggat ttcaacttcc ggtcctgttg
    17461 gttatttctt ctatgctgtt gccgaacgcg tgacgatacc ttttggctta aatcacttgg
    17521 tgacatcagt tttccgcttt accccaatcg gcggatcggc agtgattggc ggtgaagagt
    17581 attacggcac cctgaacatg tttatggcat acgtcaaaga gaatgcggtc attccgctgg
    17641 atttggcggg gaaaatggag cagggcaaac tgatgattca gtatggtctg gctggagccg
    17701 cgctggcgat gtatcgcact gctcatgctc aaaacagaag ggctatcaaa gcattgctga
    17761 tttccggtgt gctcacggta attattggcg gcgtcagcga gccgattgaa tttctgttct
    17821 tatttgtcag cccgctgttg tttgtcttcc atgcctttat gaatggattg gctaacatgg
    17881 ttctgccata tatgggcgtg aagatgggct ttactggcga tctgattcaa tttattagct
    17941 ttggtgtctt acgtggcaca agaacgggat ggccattagc ggtatgtgtt gaagtggctt
    18001 atttcttcat ttattacttt gtgttccgtt ggaccattct caaatttaac ctgatgactg
    18061 taggccgtga agagtccagt cctgtcacgc tgaacgctca cgaagaaact gcaatagcta
    18121 acatcccagt tcatgataaa tcagagttgc aggcagcgga gcaaatggtt aaggctctgg
    18181 gtggtaaaga aaatattaaa tcactggata attgtgtaac tcgtttgcgt ttaactatcg
    18241 cggatatggg attgataaat gaggctgcaa taaaaagggc cggaggaatt gcggttgtga
    18301 aacttgatca aaatacctta caagtcatta tcggtacaaa agtcatcgcc ctacgtcggg
    18361 atatggataa ttacatgggg atatgttgat ggatattttt aatacctcaa tttctcgtaa
    18421 aggaacatat tgcacacaat gggacttttg tgaagacaga tttggtgtaa aagatgtatt
    18481 accattctct atttcagata tggatcttcc gataccggaa gctatcatca gaacattaaa
    18541 aaaacgtctg gaacacccga ttttagggta cagtcgttgg cagcatgatg actatctgaa
    18601 ttcgatagtc aattggtatc atcaacaata taaaacagag attcaaccag aatggatcac
    18661 ctatagccca agcgtgatgt attcaatatc taaggcaata gaaatattga cattgaatgg
    18721 agataatatt ctcattttca cgcctgttta taacgcattt tttgatgtga ttaagcataa
    18781 tggtcgaaac atgctaacaa cctctttgat gaaagaaaat gggagaggct acgttatcaa
    18841 ctggcaagac tttgagctta aaattaaaag cgcgaagatg gtgttattat gtaatcctca
    18901 taacccgaca ggaacggtct ggtcggaaga cgatcttcac agaatcgcag catgctgtgc
    18961 aaggcataat atttggttat gttcagatga aatacatagt gattttgttt ttaatcatag
    19021 tttcacgtca gcgctaacaa taaaagatga caaagtggtg gtgtttaatt cgatttcgaa
    19081 aacatttaat gttcctgcgc taaccggatc atatatgatt tcaactgacg ataattttaa
    19141 tcataagttc agaacgatat cgaggtatcg cgatttcgta aactccccat cagtactgaa
    19201 tgtaattgcg accattgttg cctataatga atgtgaagaa tggttaaagt cattaaaggt
    19261 acatattgcc tctaacattc aatttacctt gcagtattta aatgaaaata ttccggaatt
    19321 aatcgtatgg ccagctgagg gctgctattt ttcgtgggtt gattgctcgg cccttggtta
    19381 tccctttgat aaattttacc gtcgattaat taacgaaggg agagtaggta ttatggcggg
    19441 gcatgtttat ggtactgaag gagagggcta tctgcgtctt aatctggcct gcagtcgaga
    19501 aaaattatat atggggcttg cgcgccttgc gagtgtaatt aaaaatatta atcaggaaaa
    19561 agaaaatgaa caatacggat cttatccatc ttattaaacg ttttatgcgt aacgaacata
    19621 aagcagtaga agaggttatt gattcccccc tttcggaagt cgcgaattta attaaaatat
    19681 tacaatcttg ccagggaaaa gttgttttta ttggtgttgg gaaatctggc attattgcca
    19741 gaaaacttgc tgcaacattt gccagcaccg gaactccctc gttttttgtt cacggtacgg
    19801 aagcggtaca cggcgacctt gggatggtgg cgaaagacga tgttgttatt cttatttcaa
    19861 acagtggtga gacggcggaa atcctggcga cactgcctag tttgaaaaaa atgggtaatt
    19921 atttgatctc ttttatccgc agtcatcact catcgcttgc gataagttgt gatttatctg
    19981 ttgaaatccc cgtcaaaagt gaggcggata attta
//
LOCUS       DAJVUP010000071        19762 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.071, whole genome shotgun sequence.
ACCESSION   DAJVUP010000071 DAJVUP010000000
VERSION     DAJVUP010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19762
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.071"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            49..993
                     /gene="wecH"
                     /locus_tag="OQQ75_002270"
     CDS             49..993
                     /gene="wecH"
                     /locus_tag="OQQ75_002270"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000261200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyltransferase WecH"
                     /protein_id="HCS1976579.1"
                     /translation="MVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMIS
                     GYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLW
                     FFFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYIN
                     GDTFYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADT
                     WYLYCGPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGI
                     ELKNWPILDIIWIFCATLAASLLLSMLVQRIDRNRLVS"
     gene            complement(1035..1472)
                     /locus_tag="OQQ75_002271"
     CDS             complement(1035..1472)
                     /locus_tag="OQQ75_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiaB family inner membrane protein"
                     /protein_id="HCS1976580.1"
                     /translation="MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYY
                     FAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLS
                     EKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE"
     gene            complement(1518..1859)
                     /locus_tag="OQQ75_002272"
     CDS             complement(1518..1859)
                     /locus_tag="OQQ75_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976581.1"
                     /translation="MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTAT
                     FGNYAYLRAEKLGQLDNFFTHICQLVALITIGLLFIGVLNAPINAYEMVIYPIAFFVC
                     LFGQMRLFRSV"
     gene            complement(2024..2215)
                     /locus_tag="OQQ75_002273"
     CDS             complement(2024..2215)
                     /locus_tag="OQQ75_002273"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976582.1"
                     /translation="MGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY
                     QPRRETFRRLYQQLLPLMA"
     gene            complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="OQQ75_002274"
     CDS             complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="OQQ75_002274"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005077809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HCS1976583.1"
                     /translation="MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQD
                     PEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCA
                     QECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
                     TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAK
                     AWGMATVPVVAGGGDNAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCH
                     ALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADESAEPVWFLPYLSGER
                     TPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGG
                     GARSEYWRQMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH"
     gene            complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="OQQ75_002275"
     CDS             complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="OQQ75_002275"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HCS1976584.1"
                     /translation="MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRF
                     AACYWHTFCWNGADMFGVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVSFYCFHD
                     VDVSPEGASLKEYINNFAQMVDVLAAKQEESGVKLLWGTANCFTNPRYGAGAATNPDP
                     EVFSWAATQVVTAMEATHKLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVE
                     HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAG
                     HSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTG
                     GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNS
                     ELGQQILKGQMSLADLAKYAQEHNLSPVHQSGR"
     gene            5227..6198
                     /gene="xylF"
                     /locus_tag="OQQ75_002276"
     CDS             5227..6198
                     /gene="xylF"
                     /locus_tag="OQQ75_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1976585.1"
                     /translation="MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDR
                     DIFVKKAESLGAKVFVQSANGNGETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA
                     KQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN
                     AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALTANNNKIDAVVASNDATAGG
                     AIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGN
                     GQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL"
     gene            6276..7805
                     /gene="xylG"
                     /locus_tag="OQQ75_002277"
     CDS             6276..7805
                     /gene="xylG"
                     /locus_tag="OQQ75_002277"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HCS1976586.1"
                     /translation="MPYLLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKS
                     TLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENI
                     FLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEQETSVLLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDG
                     QHIGTRDAAGMSEDDIITMMVGRELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKR
                     VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQA
                     IAQGIAMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQL
                     KVKTSSPDLAIGRLSGGNQQKAILARCLRILILDEPTRGIDIGAKYEIYKLINQLVQQ
                     GIAVIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSEHHVEKQS
                     V"
     gene            7783..8964
                     /gene="xylH"
                     /locus_tag="OQQ75_002278"
     CDS             7783..8964
                     /gene="xylH"
                     /locus_tag="OQQ75_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose ABC transporter permease XylH"
                     /protein_id="HCS1976587.1"
                     /translation="MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFT
                     WTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICD
                     VWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT
                     TVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVV
                     GRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLE
                     AARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG
                     TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR
                     S"
     gene            9042..10220
                     /gene="xylR"
                     /locus_tag="OQQ75_002279"
     CDS             9042..10220
                     /gene="xylR"
                     /locus_tag="OQQ75_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator XylR"
                     /protein_id="HCS1976588.1"
                     /translation="MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED
                     FRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATD
                     NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGL
                     ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGI
                     DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRS
                     TDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMI
                     HAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNREVML
                     "
     gene            complement(10328..11152)
                     /locus_tag="OQQ75_002280"
     CDS             complement(10328..11152)
                     /locus_tag="OQQ75_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein bax"
                     /protein_id="HCS1976589.1"
                     /translation="MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKAS
                     NKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWL
                     ISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA
                     ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPA
                     YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM"
     gene            11472..13502
                     /gene="malS"
                     /locus_tag="OQQ75_002281"
     CDS             11472..13502
                     /gene="malS"
                     /locus_tag="OQQ75_002281"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1976590.1"
                     /translation="MKLASCFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPK
                     GTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGKYTLQIDTRSGTPT
                     LMISIQNAAEPVANLVRECPKWDGLPLTLDVSATFPEGAAVRDYYSQQIAIVKNGQIT
                     LQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMA
                     EIGTFHGGDLRGLINKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYY
                     TQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYL
                     SGDEVKKTLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNP
                     GFDDLTMSLAFLPDIKTESTTASGLPVFYKNKTDTHAKVIEGFTPRDYLTHWLSQWVR
                     DYGIDGFRVDTAKHVELPAWQQLKTEASSALREWKKTNPDKALDDKPFWMTGEAWGHG
                     VMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDT
                     RLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSA
                     ANVAHWQKISQFRARHPAIGAGKQTTLSLKQGYGFVREHGDDKVLVIWAGQQ"
     gene            13680..14933
                     /gene="avtA"
                     /locus_tag="OQQ75_002282"
     CDS             13680..14933
                     /gene="avtA"
                     /locus_tag="OQQ75_002282"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HCS1976591.1"
                     /translation="MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIP
                     EMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIAL
                     TNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELL
                     PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVID
                     NAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI
                     ISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHK
                     PEGAIFLWLWFKDLPITTEQLYQRLKARGVLMVPGHNVFPGLDKPWPHTHQCMRMNYV
                     PEPEKIEAGVKILAEEIERAWAESH"
     gene            complement(15084..15557)
                     /locus_tag="OQQ75_002283"
     CDS             complement(15084..15557)
                     /locus_tag="OQQ75_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1976592.1"
                     /translation="MNRFIIADATKCIGCRTCEVACAVSHQENQDCAALSPDEFISRI
                     RVIKDHSWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFG
                     AMEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV"
     gene            complement(15659..16507)
                     /gene="yiaJ"
                     /locus_tag="OQQ75_002284"
     CDS             complement(15659..16507)
                     /gene="yiaJ"
                     /locus_tag="OQQ75_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator YiaJ"
                     /protein_id="HCS1976593.1"
                     /translation="MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCP
                     LAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH
                     IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMG
                     KIYMAFGHPDYVKSYWENHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENEL
                     GVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRD
                     DLGAIT"
     gene            16708..17706
                     /gene="yiaK"
                     /locus_tag="OQQ75_002285"
     CDS             16708..17706
                     /gene="yiaK"
                     /locus_tag="OQQ75_002285"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HCS1976594.1"
                     /translation="MKVTFEQLKAAFNRALISRGVDSETADACAEMFARTTESGVYSH
                     GVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAA
                     DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI
                     VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRI
                     LPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPT
                     RDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL"
     gene            17718..18186
                     /locus_tag="OQQ75_002286"
                     /pseudo
     CDS             17718..18186
                     /locus_tag="OQQ75_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
     gene            18304..18777
                     /gene="yiaM"
                     /locus_tag="OQQ75_002287"
     CDS             18304..18777
                     /gene="yiaM"
                     /locus_tag="OQQ75_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate TRAP transporter small
                     permease YiaM"
                     /protein_id="HCS1976595.1"
                     /translation="MKKILEVILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYL
                     FVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLK
                     TIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA"
     gene            18780..>19762
                     /locus_tag="OQQ75_002288"
     CDS             18780..>19762
                     /locus_tag="OQQ75_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HCS1976596.1"
                     /translation="MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMA
                     QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAM
                     IMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFG
                     VSSGLSISKLFMAGIAPDMMMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIW
                     ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTS
                     VVMFLVASAQVSTWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAILIVG"
BASE COUNT         4986 a         4947 c         4803 g         5026 t
ORIGIN      
        1 cagcccaaaa tttactggat tgataacctg cgagggatag cgtgtttaat ggtggtgatg
       61 attcacacca ctacctggta tgtgaccaat gctcatagtg ttagccccgt cacatgggat
      121 atcgccaatg ttctgaattc tgcctctcgt gtcagcgtgc cgctattttt catgatttcc
      181 ggctatctct tttttggcga acgcagcgcc cagccgcgcc atttcttgcg tatcggctta
      241 tgtctgattt tttatagcgc aatcgcactg ctctacattg cgctgtttac ctccatcaat
      301 atggagttag cgctgaaaaa cctgctgcaa aagccagtgt tttaccactt gtggtttttc
      361 ttcgcgattg cggtgattta tctggtttca ccgctgattc aggtgaagaa cgtcggcgga
      421 aaaatgttgc tggtgctaat ggcggtgatt ggcattatcg ctaacccaaa cacagtgccg
      481 cagaaaattg acggttttga atggctgcca attaacttat atatcaatgg cgatactttt
      541 tactacattc tgtatggcat gttgggccgc gctataggga tgatggacac acagcataaa
      601 gcactgtcgt gggtgagcgc cgcgctgttt gcgacggggg tttttattat ctctcgcggg
      661 acattatatg aattgcagtg gcgcggaaat tttgccgata cctggtatct ttactgtggg
      721 ccgatggttt ttatctgcgc aatcgcgcta ttgactctgg ttaaaaacac gctggatacg
      781 cgtaccattc gcggacttgg cttaatctcc cgccattcat tgggtatata cggattccac
      841 gccttgatta tccatgcgct gcgcacccgg ggaattgagc ttaaaaattg gccaatactg
      901 gatattattt ggatcttttg cgcgacgttg gcagcgagtt tgttactttc tatgctggta
      961 caacgaatcg acagaaacag attagtgagt taagtaaaag cccgttcaca ttggactgac
     1021 cgggcttacg tgaattattc gctgtattct tcctgggtaa cctgtgtttc ttttggcggg
     1081 tttattccgg catcacgaat attcttctgc accgctactg caccaaacaa gcttaagaag
     1141 aaagccagtc cataaaaacc tttttcactg agtaataatg tcgcattcca cagacctacc
     1201 atcagtaatg caacagagat aataaagaca gtcaggcagg tcatataata aatggaagtg
     1261 gtcggtatgc cttcatactt gtcccgaacg gtcttttgat aagacgcagc agaaaacagt
     1321 cctaacacca gtacggcaaa ataataccct ttttcattta actgcatctc tgcattccat
     1381 agccctaaca gataggtaac gataccacca acgagagcta tccatgacac aatactaaag
     1441 gccggtgaat aggttgatat tttgttgtcc atcacagtat tcctttcatt cctgaatgtg
     1501 taagagcttt atgttgctca taccgagcga aacaaacgca tttgaccaaa caagcagaca
     1561 aaaaaggcga tggggtagat caccatttca taagcattga taggtgcatt taaaacaccg
     1621 ataaacaaga gaccgatagt gattaacgca actaactggc agatatgggt aaaaaaatta
     1681 tccagttgcc cgagtttttc tgcgcgaaga tatgcatagt taccaaaagt tgctgtcatt
     1741 aacacgccaa gaaaatagcc ttttccactt agcaatgggc atgagatcca tagcccaacc
     1801 agataaacca gcgccccgac aacaaataat agttttgcca cagtttttga ggttttcata
     1861 acgatctcca tatctaccag cgatacatta cgagtaacca acgaaagaca aaactgaaaa
     1921 atgccattaa caaatgattt tcagaataaa ttcatactaa atattaatta gtgagatata
     1981 tagatgtgaa ttatccccca cccggtcagg caggggataa cgtttacgcc attaatggca
     2041 gaagttgctg atagaggcga cggaacgttt cacgtcgtgg ctgataagcg gcataacgct
     2101 gcgcatctgg tagatgcgac tgttctaacg gtagctgcgg caacaactca atgagcgatt
     2161 tctctggatt cgccgcaatc tgcgccagcc ttgctgcgcc cagtgctggc cccacatccc
     2221 cccgtacggt aatcgagctg ctgaccgctg atatccgcca gcatctgacg ccagtactca
     2281 ctacgcgccc cgccaccaat caacgtaaca ctttgcggtt taatgccgca ggcatgcacg
     2341 acatccatgc catctgccag cgcataaccc acgccttcca gcactgctcg cgccagttca
     2401 ttggggccat gttgatgagt caaaccaaag aaaaccccct tcgcctgggg attattgtgt
     2461 ggtgtacgct cgccggaaag ataaggcaga aaccaaactg gctcggcact ttcatcagcc
     2521 tgttgagctg cagcgattaa agctgggaca ttgcacaggc cggttaattt cgcgacccaa
     2581 tccagacacg atgctgcact cagcattaca gacattaaat gccaacgctg cggtagcgca
     2641 tggcaaaagc tgtgtacagc gctttctggc ttgcttaaga acccttcgct gacagcaaaa
     2701 tagacccccg acgtccccag cgataacatt gcctgattag catcaaccat tcccacacca
     2761 actgcattgt cgccaccgcc tgcgacaact ggcaccgtcg ccatacccca cgctttcgca
     2821 acttcaggta acaaagcacc agtaatttcg ctgccttcgt ataatgcggg catctggtca
     2881 cgagataagt cgcaagcctg cagcatgacg tcactccagt cacgctttgc gacatccagc
     2941 cacatggtgc cagctgcgtc agacatatcg ctggcaaact cccccgtcat acgcagacgc
     3001 aagtaatctt tcggtaataa tactttgtcg atttgacgga atatctccgg ctcatgccgc
     3061 tgaacccata gcaatttagg cgcagtaaat ccgggcatca tcaggttgcc ggtaatcact
     3121 cgtgattgcg gaactctcgc ttccagcaaa gtgcactctt gcgcacagcg cccgtcgttc
     3181 cacaaaatgg cagggcgcaa tacccgttgt tgagcatcca gtaaggttgc tccatgcatc
     3241 tggccggcaa tacccaatgc tttaacgtcc tgcagagaat gctgatcgcc cagagctttc
     3301 attgcgcgat cagttgcctg ccaccactgt tccgggtctt gttccgacca gagtggatgc
     3361 gggcgcgaaa cggtcagctt ttccgtttgc gaagcaacca cctcaccctg ctcgttgagc
     3421 aaaataactt ttacgcccga ggtgccaaga tctatcccga tatacatatc gatcgttcct
     3481 taaaaaaatg cccggtatcg ctaccgataa ccgggccaac ggactgcaca gttagccgtt
     3541 atttgtcgaa cagataatga tttaccagat tttccagttg ctcctagcga ccactctgat
     3601 gcaccggaga caaattatgt tcctgagcat atttggctaa atctgccagt gacatttggc
     3661 ctttcaggat ttgctggccc aattcgctat tccagccgga ataacgctgc gcgatgcgtt
     3721 tatccagctc gccatcttca atcatgcgcg ctgcaatttt cagcgccagt gccatcgtat
     3781 ccatcgcgcc gatatgaccg taaaacagat catatttatc agtactttga cgacgtactt
     3841 tggcatcgaa gttcagacca ccggtggtga aaccgcctgc tttgagaatt tcatacatca
     3901 ccagcgcatt ctcttccaca ctgttcggga actggtcggt gtcccagccc agttgcgcat
     3961 cgccacggtt ggcgtcgaca gaaccgaaca ggccaagcgc aatggcggtg gctatttcat
     4021 gatggaaaga gtgacctgcc agcgtcgcgt ggttagcttc aatgttcagt ttaatctctt
     4081 tttccagacc aaactgtttc aggaagccat agaccgtcgc ggcatcgtaa tcatattgat
     4141 gtttagtcgg ttcttgcggt ttcggttcga taagcaacgt gccctggaag ccgattttat
     4201 gtttatgctc aaccaccatc tgcataaagc ggcccagttg ttcacgctcc tgacgcaagt
     4261 cggtatttaa cagcgtttcg taaccttcac gaccacccca caggacatag ttttcaccgc
     4321 ccaatttatg ggttgcttcc atcgctgtaa caacttgcgt tgccgcccag ctgaagactt
     4381 caggatctgg gttcgtcgcc gcacccgcgc catagcgagg gtttgtaaag cagttagcgg
     4441 ttccccacag cagcttcacg ccgctctctt cttgcttggc tgccaggaca tcaaccattt
     4501 gcgcaaaatt attgatgtac tcttttaacg acgcgccctc aggggaaaca tccacatcgt
     4561 ggaagcaata aaatgacaca tgtaacttgt ggaaaaactc aaatgcgaca tctgctttac
     4621 gcttcgccaa cgccagtgcc tcaccaggct gctgccacgg acgattaaac gcccccacac
     4681 caaacatgtc cgccccgttc cagcagaagg tgtgccagta acaggcggca aaacgcaagt
     4741 gctcttccat acgcttaccc aacaccagtt cgtcgggatt gtagtgacgg aatgctaacg
     4801 ggtttgagga ttttgagcct tcataacgaa cgcgatcgag ctggtcaaaa taggcttgca
     4861 tattgaactc cataatcagg taatgccgcg ggtgatggat gatgtcgtaa tattgggcac
     4921 tccctttcag ttgctcaatt atgttatttc acactgctat tgagataatt cacaagtgtg
     4981 cgctcgctcg caaaataaaa tgggatgatg aaactgggta attcctcgaa gataaaaatg
     5041 caataagtac aattgcgcaa caaaagtaag atctcggtca taaatcaaga aataaaccaa
     5101 aaatcgtaat cgaaagataa aaatctgtaa ttgttttccc ctgtttagtt gctaaaaatt
     5161 ggttacgttt atcgcggtga ttgttactta ttaaagctgt cctctaacta cagaaggccc
     5221 tacaccatga aaataaagaa cattctactc accctttgca cctcacttct gcttaccaac
     5281 gttgcggcac acgccaaaga agtcaaaata ggtatggcga ttgatgatct acgtcttgaa
     5341 cgctggcaaa aagatcgaga tatttttgtg aaaaaggctg aatctctcgg tgcgaaagta
     5401 tttgtacagt ctgcaaatgg caatggagaa acacaaatgt cgcagattga aaacatgatt
     5461 aaccggggtg tcgatgttct tgtcattatt ccgtataacg gccaggtatt aagtaacgtt
     5521 gtaaaagaag ccaaacaaga aggtattaaa gtattagctt acgaccgtat gattaacgat
     5581 gcggatatcg atttttatat ttctttcgat aacgaaaaag tcggtgaact gcaggcaaaa
     5641 gccctggtcg atattgttcc gcaaggtaat tacttcctga tgggcggctc gccggtagat
     5701 aacaacgcca agctgttccg cgccggacaa atgaaagtgt taaaacctta cgttgattcc
     5761 ggaaaaatta aagtcgttgg tgaccaatgg gttgatggct ggttaccgga aaacgcgcta
     5821 accgccaata ataacaaaat tgatgctgta gttgcctcaa acgatgccac cgcaggtggg
     5881 gcaattcagg cattaagcgc gcaaggttta tcagggaaag tagcaatttc cggccaggat
     5941 gcggatctcg caggtattaa acgtattgct gccggtacgc aaactatgac ggtgtataaa
     6001 cctattacat tgctggcaaa tactgccgca gaaattgccg ttgaattggg caatggtcag
     6061 gagccaaaag cagatacctc actgaataat ggcctgaaag atgtcccctc ccgcctcctg
     6121 acaccgatcg atgtgaataa aaacaacatc aaagatacgg taattaaaga cggattccac
     6181 aaagagagcg agctgtaagc gttacgcccc ggcgcggagc gggggcgtga tttctctcca
     6241 tgccgcgtga atgaattggc ttaggtggag tcgttatgcc ttatctactt gaaatgaaga
     6301 acattaccaa aaccttcggc agtgtgaagg cgattgataa cgtcagcttg cggttgaatg
     6361 ctggcgaaat cgtctcactc tgtggggaaa atgggtctgg taaatcaacg ctgatgaaag
     6421 tgctgtgtgg tatttatccc catggctcct acgaaggcga aattattttt gcgggagaag
     6481 agattcaggc gagtcacatc cgcgataccg aacgcaaagg tatcgccatc attcaccagg
     6541 aattggccct ggtgaaagaa ttgaccgtgc tggaaaatat cttcctgggt aacgaaataa
     6601 cccacaatgg cattatggat tatgacctga tgacgctacg ctgtcagaag ctgctcgcac
     6661 aggtcagttt atccatttca cctgataccc gcgttggcga tttagggctt gggcaacaac
     6721 aactggttga aattgccaag gcacttaata aacaggtgcg cttgttaatt ctcgatgaac
     6781 cgacagcctc attaactgag caggaaacgt cggttttact ggatattatt cgcgatctac
     6841 aacagcacgg tatcgcctgt atttatattt cgcacaaact caacgaagtc aaagcgattt
     6901 ccgatacgat ttgcgttatt cgcgacggtc agcacattgg tacgcgtgat gctgccggaa
     6961 tgagtgaaga cgatattatc accatgatgg tcgggcgaga gttaaccgcg ctttacccta
     7021 atgaaccaca taccaccgga gatgaaatat tacgtattga acatctgacg gcatggcatc
     7081 cggttaatcg tcatattaaa cgagttaatg atgtctcgtt ttccctgaaa cgtggcgaaa
     7141 tactgggtat tgccggactc gttggtgccg gacgtaccga gaccattcag tgcctgtttg
     7201 gcgtgtggcc cggacaatgg gaaggaaaaa tttatattga tggcaaacag gtagatattc
     7261 gtaactgtca gcaagccatc gcccagggga ttgcgatggt acccgaagac agaaagcgcg
     7321 acggcatcgt tccggtaatg gcggttggta aaaatattac cctcgccgca ctcaataaat
     7381 ttaccggtgg cattagccag cttgatgacg cggcagagca aaaatgtatt ctggaatcaa
     7441 tccagcaact caaagttaaa acgtcgtccc ccgatcttgc tattggacgt ttgagcggcg
     7501 gcaatcagca aaaagcgatc ctcgcccgct gtctgcgcat tctcattctt gatgaaccta
     7561 ccaggggtat tgatattggc gcgaaatatg agatctacaa attaattaac caactcgtcc
     7621 agcagggtat tgccgttatt gtcatctctt ccgaattacc tgaagtgctc ggccttagcg
     7681 atcgtgtact ggtgatgcat gaagggaaac taaaagccaa cctgataaat cataacctga
     7741 ctcaggagca ggtgatggaa gccgcattga ggagcgaaca tcatgtcgaa aagcaatccg
     7801 tctgaagtga aattggccgt accgacatcc ggtggctttt ccgggctgaa atcactgaat
     7861 ttgcaggtct tcgtgatgat tgcagctatc atcgcaatca tgctgttctt tacctggacc
     7921 accgatggtg cctacttaag cgcccgtaac gtctccaacc tgttacgcca gaccgcgatt
     7981 accggcatcc tcgcggtagg aatggtgttc gtcataattt ctgctgaaat cgacctttcc
     8041 gtcggctcaa tgatggggct attaggtggc gtcgcggcga tttgtgacgt ctggttaggc
     8101 tggcctttgc cacttaccat cattgtgacg ttggttctgg gactgcttct cggtgcgtgg
     8161 aacggatggt gggtcgcgta ccgtaaagtc ccttcattta ttgtcaccct cgcgggcatg
     8221 ttggcatttc gcggcatact cattggcatc accaacggca cgactgtatc ccccaccagc
     8281 gccgcgatgt cacaaattgg gcaaagctat ctccccgcca gtaccggctt catcattggc
     8341 gcgcttggct taatggcttt tgttggttgg caatggcgcg gaagaatgcg ccgtcaggct
     8401 ttgggtttac agtctccggc ctctaccgca gtagtcggtc gccaggcttt aaccgctatc
     8461 atcgtattag gcgcaatctg gctgttgaat gattaccgtg gcgttcccac tcctgttctg
     8521 ctgctgacgt tgctgttact cggcggaatg tttatggcaa cgcggacggc atttggacga
     8581 cgcatttatg ccatcggcgg caatctggaa gcagcacgtc tctccgggat taacgttgaa
     8641 cgcaccaaac ttgccgtgtt cgcgattaac ggattaatgg tagccatcgc cggattaatc
     8701 cttagttctc gacttggcgc tggttcacct tctgcgggaa atatcgccga actggacgct
     8761 attgcagcat gcgtgattgg cggcaccagc ctggctggcg gtgtgggaag cgttgccgga
     8821 gcagtaatgg gggcatttat catggcttca ctggataacg gcatgagtat gatggatgta
     8881 ccgaccttct ggcagtatat cgttaaaggt gcgattctgt tgctggcagt atggatggac
     8941 tccgcaacca aacgccgttc ttgattttga taaaaatttt ctcaaagccg gttacgtatt
     9001 accggttttg agtttttgca tgattcagca ggaaaagaac catgtttact aaacgtcacc
     9061 gcatcacatt actgttcaat gccaataaag cctatgaccg gcaggtagta gaaggcgtag
     9121 gggaatattt acaggcgtca caatcagaat gggatatttt cattgaagaa gatttccgcg
     9181 cccgcattga taaaatcaag gactggttag gagatggcgt cattgccgac ttcgacgaca
     9241 aacaaatcga gcaagcgctg gctgatgtcg acgtccccat tgttggggtt ggcggctcgt
     9301 atcaccttgc agaaagttac ccacccgttc attacattgc caccgataac tatgcgctgg
     9361 ttgaaagcgc atttttgcat ttaaaagaga aaggcgttaa ccgctttgct ttttatggtc
     9421 ttccggaatc aagcggcaaa cgttgggcca ctgaacgcga atatgcattt cgtcagcttg
     9481 tcgccgaaga aaagtatcgc ggagtggttt atcaggggtt agaaaccgcg ccagagaact
     9541 ggcaacacgc gcaaaatcgg ctggcagact ggctacaaac gctgccaccg caaaccggga
     9601 ttattgccgt tactgacgcc cgggcgcggc atattctgca agtatgtgaa catctacaca
     9661 ttcccgtacc ggaaaaatta tgcgtgattg gcatcgacaa cgaagaactg acccgctatc
     9721 tgtcgcgtgt cgccctttct tcggtcgctc agggcgcgcg gcaaatgggc tatcaggcgg
     9781 caaaactgtt gcatcgatta ttagataaag aagaaatgcc gctacagcga attttggtcc
     9841 caccagttcg cgtcattgaa cggcgctcaa cagattatcg ctcgctgacc gatcccgccg
     9901 ttattcaggc catgcattac attcgtaatc acgcctgtaa agggattaaa gtggatcagg
     9961 tactggatgc ggtcgggatc tcgcgctcca atcttgagaa gcgttttaaa gaagaggtgg
    10021 gtgaaaccat ccatgccatg attcatgccg agaagctgga gaaagcgcgc agtctgctga
    10081 tttcaaccac cttgtcgatc aatgagatat cgcaaatgtg cggttatcca tcgctgcaat
    10141 atttctactc tgtttttaaa aaagcatatg acacaacgcc aaaagagtat cgcgatgtaa
    10201 atcgcgaggt catgttgtag cgatgatgag aattgtcggc gtcacatcag ggaactcagc
    10261 acagccacct gatgcgagca aaagccttat ccgaccgaca aatcagataa ggctcaagga
    10321 aatgcaatta catatgcgcc gcgattaacc gttggttatc ctggtacatt gcgaacaggt
    10381 agttattata actcttccct ttggtcgagt agcccttcag cttgtgaatc atcgctgtgg
    10441 cagtcacttc ctgatccgct ttacgcagct gcgcacgcga tttacggaac gaagagtaag
    10501 ccgggtgcgt attcaggtta gtgacatagg cgctcaccga ttctttgaca gaactaaact
    10561 gtgagtaccc tttcacttta cccggcgcat tggtacaacg tcctttcatg catttcatgc
    10621 cgaacagatt gttattgttg cgcgccagct tcgacgttcc ccaaccgctt tctgctgcag
    10681 ccatcgtcgc caccatactg gtagggataa tgtctacgcg ttcaagcaag gtattccacg
    10741 ggatttttcg cgtattacca gaccacttca ccttgtagcg tttggcgatg tctttcagac
    10801 gcgcacgctc agcaggtgac cattggccct gatactgttt tgaaatcagc cagttacgtt
    10861 ctgcagtaat ggctgcattt tggctggtaa tgtaaggcat tacggtccgg agaaacgcct
    10921 ttttccttgg tgttccggaa gggtattttc gcaaatcagg aagtgaacta ctctttgcac
    10981 tattgcgaga atactcttgt ttactgctta cctgtttatt actagcttta gttaagtggg
    11041 acttttgact cgctgttgtt gtgtgcgtct tcgctaacac ctcactcgaa aacaccagag
    11101 tgagtaacat aagaatcatc gccccatatc gtcgtatggg agtcaaaatc atcaggtctc
    11161 ctggtcggat ttaatcattc caacacctta tatttttcac aaatttgaga gttgaatctc
    11221 aaatcatatc aaaaatagct gtcaagagca ccccaaggaa tagtccaaat ctgaaactat
    11281 gtcacgagtt aacgattcag attggcgcta aatcgcagaa aatgtggggt ttatcgcaaa
    11341 attcagccgt tttttgcgcg cgatcgctca cccttgcttc tcatcctgtg gacttaccgc
    11401 tcagggatga gttttgtctg gcttatcgct ggcaaactgt ctgaaatcgc agcaataagg
    11461 actcatccac catgaaactc gcctcctgtt ttctgacact ccttcctggc ttcgccgttg
    11521 ccgccagctg gacttctccg gggttccctg cctttagcga acagggaacg ggaacatttg
    11581 tcagccacgc gcagttgccc aaaggtacgc gtccactcac gctaaatttt gaccaacagt
    11641 gctggcagcc tgcagatgcg ataaaactca atcagatgct ttccctgcaa ccttgtagca
    11701 acacgccgcc tcaatggcga ttgttcaggg acggcaaata tacgctgcaa atagacaccc
    11761 gctccggtac gccaacattg atgatttcca tccagaacgc cgccgaaccg gtagcaaacc
    11821 tggtccgtga atgcccgaaa tgggatggat taccgctcac gctggatgtc agcgccactt
    11881 tcccggaagg agccgccgta cgggattatt acagccagca aattgcgata gtgaagaacg
    11941 gtcaaataac gttacaaccc gctgctacca gcaacggttt actcctgctg gaacgggcag
    12001 aaactgacac atccgcccct ttcgactggc ataacgccac ggtttacttt gtgctgacag
    12061 atcgtttcga aaacggcgat cccagtaatg accagagtta cggacgtcat aaagacggta
    12121 tggcggaaat tggcactttt cacggcggcg atttacgcgg cctgatcaac aaactggatt
    12181 acctccagca gttgggcgtt aatgctttat ggataagcgc cccatttgag caaattcacg
    12241 gctgggtcgg cggcggtaca aaaggcgatt tcccgcatta tgcctaccac ggttattaca
    12301 cacaggactg gacgaatctt gatgccaata tgggcaacga agccgatcta cggacgctgg
    12361 ttgatagcgc acatcagcgc ggtattcgta ttctctttga tgtcgtgatg aaccacaccg
    12421 gctatgccac gctggcggat atgcaggagt atcagtttgg cgcgttatat ctttctggtg
    12481 acgaagtgaa aaaaacgctg ggtgaacgct ggagcgactg gaaacctgcc gccgggcaaa
    12541 cctggcatag ctttaacgat tacattaatt tcagcgacaa aacaggctgg gataaatggt
    12601 ggggaaaaaa ctggatcaga acggatatcg gcgattacga caatcctgga ttcgacgatc
    12661 tcactatgtc gctggccttt ttgccggata tcaaaaccga atcaactacc gcttctggtc
    12721 tgccggtgtt ctataaaaac aaaacggata ctcacgctaa agtcatcgaa ggctttacac
    12781 ctcgcgatta cttaacccac tggttaagtc agtgggtccg cgactatggg attgatggtt
    12841 ttcgggtcga taccgccaaa catgttgagt tgcccgcctg gcagcaactg aaaaccgaag
    12901 ccagctccgc gcttcgcgaa tggaaaaaaa ctaaccccga caaagcatta gatgacaaac
    12961 ctttctggat gaccggtgaa gcctggggcc acggcgtgat gcaaagtgac tactatcgcc
    13021 acggcttcga tgcgatgatc aatttcgatt atcaggagca ggcggcgaaa gcagtcgatt
    13081 gtctggcgca gatggatacg acctggcagc aaatggcgga gaaattgcag ggtttcaacg
    13141 tgttgagcta cctctcgtcg catgataccc gtctgttccg tgaagggggc gacaaagcag
    13201 cagagttatt actattagcg ccaggcgcgg tacaaatctt ttatggcgat gaatcctcgc
    13261 gtccgttcgg tcctacaggt tctgatccgc tgcaaggtac acgttcggat atgaactggc
    13321 aggatgttag cggtaaatct gccgccaacg tcgcgcactg gcagaaaatc agccagttcc
    13381 gcgcccgcca tcccgcaatt ggcgcgggca aacaaacgac actttcgctg aagcagggct
    13441 acggctttgt tcgtgagcat ggcgacgata aagtgctggt catctgggct gggcaacagt
    13501 gacttttccg gcttcccgtt catcagtacc tcgggaagcc gccaaccagg ataaaatgtc
    13561 agccctaatc agcgttgcag gataaagcac cgctcactct tcaacagacc gatttgcacc
    13621 ccagcaaatg tagcgttatt gttaccttcc ttgctacaga gttcgacaga tatcccgcta
    13681 tgacattctc cctttttggt gacaaattta cccgccactc cggcattacg ctgctgatgg
    13741 aagatctgaa cgacggttta cgcacgcctg gcgcgattat gctcggcggc ggtaatccgg
    13801 cgcagatccc ggaaatgcag gactacttcc agacgctact gaccgacatg ctggaaagtg
    13861 gcaaagcgac tgatgcactg tgtaactacg acggtccaca ggggaaaacg gagctactca
    13921 cactgcttgc cggaatgctg cgcgagaagt tgggttggga tatcgaacca cagaatattg
    13981 cactaacaaa cggcagccag agcgcgtttt tctacttatt taacctgttt gccggacgcc
    14041 gtgccgatgg tcgggtcaaa aaagtgctgt tcccgctggc accggaatac attggctacg
    14101 ctgacgccgg actggaagaa gatctgtttg tctctgcgcg tccgaatatt gaactgctgc
    14161 cggaaggcca gtttaaatac cacgtcgatt ttgagcatct gcatattggc gaagaaaccg
    14221 ggatgatttg cgtctcccgg ccgacgaatc caacaggcaa tgtgattact gacgaagagt
    14281 tgctgaagct tgacgcgctg gcgaatcaac acggcattcc gctggtgatt gataacgctt
    14341 atggcgtccc gttcccgggt atcatcttca gtgaagcgcg cccgctatgg aatccgaata
    14401 tcgtgctgtg catgagtctt tccaagctgg ggctgcctgg ctcccgctgc ggcattatca
    14461 tcgccaatga aaaaatcatc actgccatca ccaatatgaa cggcattatc agcctggcac
    14521 ctggcggtat tggtccggcg atgatgtgtg aaatgattaa gcgtaacgat ctgctgcgcc
    14581 tgtctgaaac agtcatcaaa ccgttttact accagcgtgt tcaggaaact atcgccatca
    14641 ttcgccgcta tttaccggaa aatcgctgcc tgattcataa accggaagga gccattttcc
    14701 tctggctatg gtttaaggat ttgcccatta cgaccgagca gctctatcag cgcctgaaag
    14761 cacgcggcgt gctgatggtg ccggggcaca acgtcttccc gggactggat aaaccgtggc
    14821 cgcatacgca tcaatgtatg cgcatgaact acgtaccaga gccggagaaa attgaggcgg
    14881 gggtgaagat tctggcggaa gagatagaaa gagcctgggc tgaaagtcac taaaaattgc
    14941 ctgatgcgct acgcttatca ggcctacatg atttctgcaa tatattgaat ttggaagaat
    15001 ttgtaggccg gataaggcgt ttacgccgca tctggcataa acaaagcgca ctattccggc
    15061 gttgagaaac gccggaaaac gtttcaaaca ggctgctgcc gtagccgatg ccgctgcact
    15121 ttctcgacat ccatgcactg caacgccttt gtcgggcagg cttcaacaca ggccggcccc
    15181 gtctcccgat gccagcacag atcgcactta atcgccctcg cctttttgcg cgaagaaacg
    15241 acctccatcg caccaaacgg gcaagccagc atacagcttt tacagccaat gcaacgtgtt
    15301 tgttcaacga aaatatgccc atgttcgcgg cttatcgcgt caacagggca gacattcgcg
    15361 cacggtgcat cttcacactg atgacaggct actgccgtgg tccagctgtg gtctttaatg
    15421 acacgaatac gggaaataaa ctcgtctggt gacaacgcag cgcaatcctg attctcctga
    15481 tgcgacactg cgcaagccac ttcacaggta cggcaaccga tacatttcgt cgcatccgca
    15541 ataataaacc ggttcatgat cactcctttg cactaaaaca gcagagtgcc agagagcgcg
    15601 tccctactgc tttgatccaa cgaaggaaat gttaaagttt tggcacttgt ccaaagcgtt
    15661 atgtgatcgc gcccaggtca tccctgacag taaatcccag ttcattagaa atagcctgcg
    15721 cggtttcacg cagtggtttc aggagatttt tctctcccac ctgtttcaga cgtgatgtcg
    15781 aaagcgaaat cgacacggcg tacggcaccc gcccatgaat atcaaacacc ggaacagcaa
    15841 tacaggagac gccgagttcg ttttcttctc tgtccatcgc cgctccgctt tcacgaatgt
    15901 gcgccagttc gtcgaacatc gcgggcagct cggtaatggt attgcgggtt aacggctgga
    15961 tctcatgctg atggttttcc cagtatgact tcacgtagtc cgggtgacca aacgccatgt
    16021 agatcttgcc cattgcggaa cagtagagcg gcatatgctg gccaatatag gcacgggttc
    16081 gcagcatccc ggttgtgggt tccagcttat aaatcaaaat agcgtgatcg tcttcgcggc
    16141 tggagaagtt aatggtttca ccagtggcga tgttcagtgc ctcaagatgc ggagcggcga
    16201 tatgaatgat attcagcgaa gacagcgcct tctgcccgac ggcaataaat ttggtagtca
    16261 ggcggtaact ccctgcggcg ggcgcggtgg tcacatagcc gcaggactgt aatccctgca
    16321 ataagcgatg gacggtactc ttatttaaac cagccagctc cgaaagatgc gccaacggac
    16381 aaccgtttgg atagttgctc aaaatctcaa tcagcatcaa cccgcgaaac agactctggc
    16441 ttccggctgg acgctctttt tcctgcgcca tctcgttctc tttttttccc atcacttctt
    16501 tccccatttt gtcgcgtcct gatggtagcg caaagtgtgc cgtagttcac gatctcgaca
    16561 gataatttat aaccacttga tttttatgtc ttttgaaatt catcaatcag attgctttgt
    16621 taaaaagtga tcgatatatt tgaaatcaag tttcgcatat tgaaatttta agccaaaaaa
    16681 gcgatcaaaa aaacaaggaa gcctgggatg aaagtgacat ttgagcagtt aaaagcagcc
    16741 tttaatcggg ccttaatttc acgcggcgtt gacagcgaaa cggctgacgc ctgtgcagag
    16801 atgttcgccc gcaccaccga atccggcgtt tattctcacg gcgttaatcg tttccctcgt
    16861 ttcattcaac aactggaaaa cggcgatatc attcctgatg cccaacccaa acgtataacc
    16921 agcctcggcg caattgaaca gtgggatgcc cagcgttcga tcggcaacct gacggcgaaa
    16981 aagatgatgg atcgcgccat tgaactggct gccgatcacg gtattggtct ggtggcactt
    17041 cgtaatgcca accactggat gcgcggcggc agctacggct ggcaggcggc ggaaaaaggc
    17101 tatattggca tttgctggac caactccatc gccgtaatgc cgccgtgggg cgcaaaagag
    17161 tgtcgcattg gcactaaccc gctgatcgtc gccattcctt ccacgccgat caccatggtc
    17221 gatatgtcga tgtcgatgtt ctcttacggc atgttagaag ttaaccgcct ggcgggccgt
    17281 cagctcccgg tcgatggtgg ctttgatgat gagggcaatt tgaccaaaga acctggcgtt
    17341 atcgagaaga atcgccgcat tttgccgatg ggctactgga aaggttctgg catgtcgatt
    17401 gtgctggata tgatcgctac tctcctttcc gacggcgcat cggttgccga agtcacccag
    17461 gacaacagcg acgaatacgg catttcacaa atttttattg ccattgaagt ggacaagctt
    17521 atcgacggtc ccacccgcga tgccaagctg caacgcatca tggattacgt tactaccgct
    17581 gaacgcgctg acgaaaacca ggccatccgc ttacccggcc acgaatttac taccctgctg
    17641 gccgaaaacc gccgtaacgg catcactgtt gatgacagcg tgtgggccaa aatccaggcg
    17701 ttatgaggag ataagtcatg atttttggac atatcgcgca gcccaatccg tgccgtttgc
    17761 ccgccgccat tgaaaaggcg ctcgattttc tgcgcgctac caacttcaac gtcctggagc
    17821 cgggcgttgt cgaaatcgac ggcaagaata tttatgcgca aattatcgat ttaaccacac
    17881 gcgaagcggt ggaaaaccgt ccggaagtgc atcgtcggta tatcgatatt cagtttctgg
    17941 cgtggggtca agagaaaatc ggcattgcta ttgatacagg aaataataaa gtcagcgaat
    18001 cactattaga gcagcgcgat attatttttt atcatgtcag tgaacatgaa tcatttatag
    18061 aaatgatacc gggcagctac gctattttct tcccgcagga tgttcaccga ccaggttgta
    18121 ttctgcaaac aggcctctga gatacgaaaa attgtggtta aagtcgcatt aacagcgctg
    18181 aattaatcaa ataatcgtct acgccagaac gactgggtaa tgttattgct ctaactatat
    18241 taataattta ggttgctgca catgcaactt gaattatgac agacatagcc tcaaggaata
    18301 gctatgaaaa aaatacttga agtaatactg gcgattaatc tcgccgtact ttcctgtatt
    18361 gtgtttataa acattatttt aagatatggt tttcagacaa gcattttatc tgtagatgaa
    18421 ttgtcacgtt atttatttgt ctggttaaca tttattggcg cgattgtggc ttttatggat
    18481 aacgcccacg ttcaggtcac ctttctggtg gagaaactct cccccgcatg gcaacgacga
    18541 gtcgctctgg ttacccattc cttaatctta tttatttgtg gcgcactggc ctggggcgca
    18601 acactaaaaa caattcagga ctggagcgat tattcaccga tcctcggttt gcccatcggc
    18661 ctgatgtatg ccgcttgtct gcccaccagc ctcgttatcg cattctttga actgcgtcat
    18721 ttatatcaac tcatcacgcg tagcaattct ctaacgtcgc caccgcaagg agcttaatca
    18781 tggctgtgct gatttttctg ggctgtctgt tgggtggtat tgctatcggt ttgcctattg
    18841 cctgggcact gttgttgtgc ggggcggcgt taatgttctg gctggacatg tttgatgtcc
    18901 agatcatggc acaaacgctg gtgaacggag ccgatagctt ctccctgctg gcgattccgt
    18961 tctttgtgct ggcgggtgaa atcatgaatg cgggcggctt gtcaaaacgc attgttgacc
    19021 tgccgatgaa actggtgggg cataaaccag gcgggctggg ctacgtcggc gtgctggcag
    19081 ctatgattat ggcgagcctt tctggttctg ccgttgcgga taccgccgcc gttgccgctc
    19141 tactggtgcc gatgatgcgc agcgccaact acccggtcaa ccgggcggcg gggctgattg
    19201 cctctggcgg cattatcgcg ccaattattc ccccttccat tccgtttatt atcttcggcg
    19261 tttccagcgg attatccatc agtaagctgt ttatggcggg cattgcccct gacatgatga
    19321 tgggcgcaac gctgatgctt acctggtggt ggcaggccag tcgccttaat ttaccccgcc
    19381 agcaaaaagc aacgatgcag gaaatctggc actcttttgt ctccggtatc tgggctctgt
    19441 ttcttccagt catcattatt ggcgggtttc gctccggtct gtttacccct accgaagccg
    19501 gggccgttgc tgctttctat gcgctgtttg tcgccacagt tatttaccgt gaaatgacct
    19561 tcgccacact ttggcatgta ctcattggcg cggcgaaaac cacctcagtg gttatgtttc
    19621 tggtggcctc ggcacaagtt tccacctggc tgattaccat tgctgaactg ccgatgatgg
    19681 tttctgattt actgcaaccg ttggtcgatt caccgcgtct gctgtttatc gtcattatgg
    19741 tggctatcct gattgtcggc at
//
LOCUS       DAJVUP010000072        19625 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.072, whole genome shotgun sequence.
ACCESSION   DAJVUP010000072 DAJVUP010000000
VERSION     DAJVUP010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.072"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            6..81
                     /locus_tag="OQQ75_002289"
     tRNA            6..81
                     /locus_tag="OQQ75_002289"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39..41,aa:Thr,seq:ggt)
     gene            121..236
                     /gene="rrf"
                     /locus_tag="OQQ75_002290"
     rRNA            121..236
                     /gene="rrf"
                     /locus_tag="OQQ75_002290"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(468..1226)
                     /locus_tag="OQQ75_002291"
     CDS             complement(468..1226)
                     /locus_tag="OQQ75_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HCS1976597.1"
                     /translation="MSQILLQPANAMITLENVHKWYGQFHVLKNINLTVQPGERIVLC
                     GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPH
                     LTVLQNCTLAPIWVRKMPKKEAEALAMHYLERVRIAEHAHKFPGQISGGQQQRVAIAR
                     SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI
                     FMDRGEIVEQAAPDEFFTHPKSERTRAFLSQVIH"
     gene            complement(1234..2337)
                     /locus_tag="OQQ75_002292"
     CDS             complement(1234..2337)
                     /locus_tag="OQQ75_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709065.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HCS1976598.1"
                     /translation="MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL
                     MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL
                     VLLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
                     LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML
                     PLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQ
                     GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG
                     YVFAALIYWIFCFSMSRYSQHLKKRFNTGRTPH"
     gene            complement(2347..3517)
                     /locus_tag="OQQ75_002293"
                     /pseudo
     CDS             complement(2347..3517)
                     /locus_tag="OQQ75_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026209.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
     gene            complement(3585..4652)
                     /locus_tag="OQQ75_002294"
     CDS             complement(3585..4652)
                     /locus_tag="OQQ75_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1976599.1"
                     /translation="MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDG
                     LLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVKYTPLTAKE
                     RFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDG
                     ATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYA
                     LRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNV
                     DEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
                     IKRGQNNLWNNGGIQYAPPVR"
     gene            complement(5083..5304)
                     /locus_tag="OQQ75_002295"
     CDS             complement(5083..5304)
                     /locus_tag="OQQ75_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976600.1"
                     /translation="MKRLIPVALLTALLAGCAHDSPCVPVYDDQGCLVHTNTCMKGTT
                     QDNWETAGAIAGGAAAVAGLTMGIIALSK"
     gene            complement(5557..8661)
                     /gene="acrF"
                     /locus_tag="OQQ75_002296"
     CDS             complement(5557..8661)
                     /gene="acrF"
                     /locus_tag="OQQ75_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit AcrF"
                     /protein_id="HCS1976601.1"
                     /translation="MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVS
                     VSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTNDSAGSVTITLTFQSGTDPDI
                     AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVAS
                     NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ
                     LGGTPALPGQQLNASIIAQTRLKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN
                     VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ
                     LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS
                     AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK
                     GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEE
                     DQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAG
                     MAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFE
                     LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALSV
                     SLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRMLPEDVDKLYVRSANGEMV
                     PFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGY
                     DWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA
                     ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLR
                     PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR
                     CFKG"
     gene            complement(8673..9830)
                     /gene="acrE"
                     /locus_tag="OQQ75_002297"
     CDS             complement(8673..9830)
                     /gene="acrE"
                     /locus_tag="OQQ75_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrE"
                     /protein_id="HCS1976602.1"
                     /translation="MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIV
                     KTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQA
                     NYNSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAK
                     GTVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQS
                     SNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLR
                     AVFPNPQHTLLPGMYVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEAR
                     PVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK"
     gene            10229..10891
                     /gene="acrS"
                     /locus_tag="OQQ75_002298"
     CDS             10229..10891
                     /gene="acrS"
                     /locus_tag="OQQ75_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrS"
                     /protein_id="HCS1976603.1"
                     /translation="MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVT
                     RGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAK
                     IPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLD
                     VVMIIINGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELS
                     VM"
     gene            complement(10894..11073)
                     /locus_tag="OQQ75_002299"
     CDS             complement(10894..11073)
                     /locus_tag="OQQ75_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2556 family protein"
                     /protein_id="HCS1976604.1"
                     /translation="MIRKYWWLVVFAVFVFLFDTLLMQWIELLTTETDKCRNMNSVNP
                     LKLVNCDELNFQDRM"
     gene            complement(11157..12041)
                     /gene="yhdJ"
                     /locus_tag="OQQ75_002300"
     CDS             complement(11157..12041)
                     /gene="yhdJ"
                     /locus_tag="OQQ75_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1976605.1"
                     /translation="MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYN
                     IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF
                     TIKSRIVWSYDSSGVQAKKHYGSMYDPILMMVKDAKNYTFNGDAILVEAKTGSQRALI
                     DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDII
                     LDPFAGSFTTGAVAVSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG
                     NLSKRSRLSEVDPDLIAK"
     gene            complement(12127..12423)
                     /gene="fis"
                     /locus_tag="OQQ75_002301"
     CDS             complement(12127..12423)
                     /gene="fis"
                     /locus_tag="OQQ75_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HCS1976606.1"
                     /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG
                     QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN"
     gene            complement(12449..13414)
                     /gene="dusB"
                     /locus_tag="OQQ75_002302"
     CDS             complement(12449..13414)
                     /gene="dusB"
                     /locus_tag="OQQ75_002302"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HCS1976607.1"
                     /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS
                     NPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPA
                     KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED
                     CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGA
                     DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY
                     RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA"
     gene            complement(13743..14624)
                     /gene="prmA"
                     /locus_tag="OQQ75_002303"
     CDS             complement(13743..14624)
                     /gene="prmA"
                     /locus_tag="OQQ75_002303"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HCS1976608.1"
                     /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL
                     PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN
                     FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK
                     TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ
                     PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL
                     DPVVEKEEWCRITGRKN"
     gene            complement(14636..16087)
                     /gene="panF"
                     /locus_tag="OQQ75_002304"
     CDS             complement(14636..16087)
                     /gene="panF"
                     /locus_tag="OQQ75_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HCS1976609.1"
                     /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG
                     GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA
                     RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET
                     GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVETLQ
                     TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG
                     TIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS
                     TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI
                     IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH
                     PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK"
     gene            complement(16077..16319)
                     /locus_tag="OQQ75_002305"
     CDS             complement(16077..16319)
                     /locus_tag="OQQ75_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdT family protein"
                     /protein_id="HCS1976610.1"
                     /translation="MDTRFVQAHKEARWALGLTLLYLAVWLAAAYLPDVAPGFTGFPR
                     WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA"
     gene            complement(16412..17347)
                     /locus_tag="OQQ75_002306"
     CDS             complement(16412..17347)
                     /locus_tag="OQQ75_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1976611.1"
                     /translation="MGELLAEFLSRNPHQKFTQPGEFIGPFPSGAPAIFAAQVAKLSH
                     RAIFFGCVGNDDFGRLIIERLRHEGVITDGIHVMNNAVTGTAFVSYQNPQQRDFVFNI
                     PNSACGLFTAEHIDKDLLKQCNHLHIVGSSLFSFRMIDVMRKAITTIKSAGGTVSFDP
                     NIRKEMLSIPEMAQALDYLIEYTDIFIPSESELPFFARHKNLSEEQIVSDLLHGGVKH
                     VAIKRAQRGASYYKLKNGTLHAQHVTGHDIEIIDPTGAGDCFGATFITLFLSGFPAHK
                     ALQYANASGALAVMRQGPMEGISSLADIEDFLQQH"
     gene            complement(17379..18209)
                     /locus_tag="OQQ75_002307"
     CDS             complement(17379..18209)
                     /locus_tag="OQQ75_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1976612.1"
                     /translation="MKSVNVPRKSSNLLKRRLKIAEIVAAQGEIKVDDLSAQLGVSGV
                     TIRGDLSYLEQQGYLKRSFGGAIATPLSSEPEAIQPIAPLSLAQQMEIARHCARLIRD
                     RDTLFLGHGTICRKIIPLLSEVKKLRLITNDPEHALLANQFIDGEIILAGSEMLRPDT
                     ALAGKPLEQALQHFTITHSILEINHLDADGTLNINVPRLAAAWQLCFDHAQNKTVIVA
                     ADPAPSTAAIGHLHQAENVIVSRSINEQYQQQLQSADFVILYTSNECFTWSNRERLQE
                     "
     gene            18552..19406
                     /locus_tag="OQQ75_002308"
     CDS             18552..19406
                     /locus_tag="OQQ75_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000275530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose bisphosphate family class II aldolase"
                     /protein_id="HCS1976613.1"
                     /translation="MYIISSKNMLKKAQSEGYAVPAFNIHNLETLQVVVESAAQLRSP
                     VMLAGTPGTYRYGGVGSLISLVQSLAREYNLPLVLHLDHHEESDDIFNKVRAGIRSVM
                     IDGSHLPFEDNIARVQEVTTFCHRFDVSVEAELGRLGGQEDDLLVDEKDSAYTSPAAA
                     AEFVQRTQIDSLAVAIGTAHGLYAHEPRLDFVRLEQIRQRVEIPLVLHGASGLSEQDV
                     QHCIRRGICKVNVATELKIAFADALKGYFYNNPAANDPRHYMQPAKAAMKEVVTRIIG
                     VCGSEGKI"
     gene            19442..>19625
                     /locus_tag="OQQ75_002309"
     CDS             19442..>19625
                     /locus_tag="OQQ75_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976614.1"
                     /translation="MKNIKLLGSAMLVSLALFSQNSLAKEYKIGASLLTQQHPFYIDL
                     ANAMKEEAKKDNVNLSV"
BASE COUNT         5216 a         4912 c         4684 g         4813 t
ORIGIN      
        1 agcgtgctga tatggctcag ttggtagagc gcacccttgg taagggtgag gtccccagtt
       61 cgactctggg tatcagcacc actttttagg ttaaagttcg gcaaattaga aaagaatttg
      121 tctggcggca gtagcgcggt ggtcccacct gaccccatgc cgaactcaga agtgaaacgc
      181 cgtagcgccg atggtagtgt ggggtcttcc catgcgagag tagggaactg ccagacatca
      241 aataaaacaa aaggcccagt cttccgactg agccttttgt tttatctgtt gtttgtcggt
      301 gaacactctc tcgagtagga caaatccgcc gggagcggat ttgaacgttg cgaagcaacg
      361 gcccggaggg tggcgggcag gacgcccgcc ataaactgcc agacatcaaa tcaagcaaaa
      421 aggccatccg aaaggatggc ctttttgctt ttcgaactaa cattcaatta atggattacc
      481 tgcgataaaa atgccctcgt acgctctgat ttaggatgcg taaaaaattc atcaggtgca
      541 gcttgttcca ctatctcccc acgatccata aaaattaccc ggtcagcgac ggtacgtgca
      601 aaccccatct catgtgttac acacaacatt gtcatacccg actgcgccag cccaatcatc
      661 gtatccagca cctctttcac catctccgga tcgagcgccg acgttggttc atcaaacaac
      721 ataattttcg gcttcataca cagcgaacgc gcaatggcaa cgcgttgctg ctgaccacct
      781 gaaatctgtc cgggaaactt atgcgcatgt tcggcaattc tcacccgctc aaggtaatgc
      841 atcgccagag cttcagcctc tttcttaggc atcttgcgta cccaaatcgg tgccagggta
      901 cagttctgta aaacggtcag atgagggaag agattgaaat gctgaaatac cattcccact
      961 tcttgcctga cgcgctcaat attgcggata tcttcattaa gttcgatgcc atctacgaca
     1021 atccgtccct gttgatgttc ttccagatga ttaatacaac gaatggttgt cgatttaccg
     1081 gaaccagaag ggccacacag aacgatccgt tctcccggtt gcacggttaa atttatattt
     1141 ttcaaaacat ggaattgtcc ataccattta tggacgtttt ccagcgtaat catcgcgtta
     1201 gcaggttgca gtaaaatttg gctcatagtg tcctcaatgc ggtgtacgcc cggtgttaaa
     1261 acgttttttc agatgttggc tataacgtga catgctgaaa caaaagatcc agtagatcag
     1321 cgcggcgaaa acataccctt ccgtcgacat acccaaccag gcgggatcaa cggttgcctg
     1381 ctgaacgcta ctgaaaagat cgaacaagcc gatgatgatc accaggctgg tatctttgaa
     1441 gagtgcgatg atggtattta ccagcccagg aattaccagc ttcaacgcct gtggcagaat
     1501 aaccagcccc tgagttttcc agtaccccaa cgccagcgac tctgccgctt catattgccc
     1561 tttaggtagg gcctgtaatc cgcctcgcac gacttccgca acatatgctg actgaaacag
     1621 gatcacgcca accagcgcgc ggatcagttt gtcgatactg gtgccttctg ccataaacaa
     1681 cggcagcatg accgaagaca taaacaatac ggtaatcagc ggtacgccgc gccagaactc
     1741 gataaaaatg accgataaga tacgcacaat cggcatatgg gagcggcgac ctaacgccag
     1801 taagatcccc cacggtagcg cccccgcaat cccaacggat gcaataatta aagttagcgt
     1861 cagcccgccc cattgccggg tttcaacccg ctcaagacca aaaaaaccgc catacatcag
     1921 ccaccagaca atcagtgggt aaatcaccgc ccagaccgca atatagcgac cgcgatgcgg
     1981 gagtattttc cagaacattg gtgcgattga cacaaggcca atcagtaata ccaggttaat
     2041 tcgccagcgt tggtcgtgtg ggtaaagtcc atacataaac tgaccaaatc gttcgtggat
     2101 gaagacccaa caggcaccgg cttttgtgca gtcggcacgc gttgagccaa cccagttagc
     2161 ctgcaaaaat gcccagttca gcaacggtgg gatcagttcc cacatcaacc atatgcagcc
     2221 aatagtcagc aggctattgc tccagctgga gaacagattt tttcgcaccc acaccatcgc
     2281 gcggcttgag ttatggctcg ctgggcgcga gggctgagac agcaatactt ttgtcatcat
     2341 gactccttag cgttcaacga tcgcgatgcg gcggttatag atattcatca gcagcgagat
     2401 agtcaggctg ataatcagat agaccgacat ggtcatggct atcgtctcga tggcttgccc
     2461 cgtctggttc agcacggtgc cagcaaacag cgaaaccata tcgggatagc caatagcggc
     2521 ggcaagagag gagtttttga cgatgttgag atactggctg gttaacggcg gaataatcac
     2581 tcgcagtgcc tggggaataa tgacctggcg tagcgtaacc ccagtgaccg agccgcttca
     2641 tgttgaccat aaggcactgc ctggatccca gcgcggataa tctcggcgat aaatgcagag
     2701 gtataaaccg aaagtgccag cgttaaggct gccagttcag gaattaaaac cattccgccg
     2761 cggaagttaa agcctcgtag ggctgggaca tcccagtgta gtgctgcgcc aaaaagccat
     2821 tgcgccagta aaggcaaacc gatgatcaac actgcggcga acggccaggt gcggcgcagt
     2881 tgtccggtct ttatctggta tgttttatta aagcggaata gcccaacaga aaggactata
     2941 gccataacaa cagccaggat aaacgcaata aatccgtctc ccagctgcgg tgacggaata
     3001 taaagcccac gattgctcaa aaaggccaga tcaaacgcgc tcacagcctg gcgcgtggtc
     3061 cgggcaaatt gcgcaacacg gcaaagtacc agaagaagat ttgcagcagc gggggaatat
     3121 tacggaagat ctcaatataa attgtggata gctttcgtag cagtcagtta tccgaaagtc
     3181 tcgtcagacc gataaagaag cctaaaacag aagcgaacac aatacacaat gcagaaacca
     3241 gtagcgtatt gagtaagccg acaataaaaa cgcgtccgta ggtgtcgccc tgctggtaat
     3301 cgatcaaatg ctggacaata ccgaagccag cgccgcgatc cagaaaggca aaacctgaag
     3361 taatgccacg attactgaga ttcgttacag tgttgtgaaa taaccaacca acaattccga
     3421 caacagcaac aacggcaagg atctggaata accaggcacg aaccgtaggg ttggcaaagg
     3481 agagtgagcc tttaacggtt gagcggcgat gagacataga aacctcggaa agcataacgc
     3541 tgaagagagc gccgccgtag cgacgctcgt tacctcacac cgacttaacg cacgggcggc
     3601 gcgtactgaa taccgccgtt attccagaga ttattttgcc cacgtttaat tttcagcggg
     3661 ctttctgaac ctacgttacg ctcgaaaatt tccgagtagt tacccacctg tttgatgatg
     3721 ttataggccc atttattatc caacttcaga tccttgccgt aatcgccttc tttacccagc
     3781 agatgtgcca tatcaggcgt tgctggatta gccgcttttt catcgacgtt ctgggaattg
     3841 atgcccatct cttcagcatt cagcatggcg aaaagcgtcc agcgtacaat cgagaaccat
     3901 tcatcatcgc cacgacgaac taccggccca agcggttctt tagagataac ctccggtaag
     3961 acaatccatt cagctgggtt gcttaatttg atgcgcaggg catacagttg cgactgatcc
     4021 gaggccagcg tatcgcagcg accagattcc agtgccttcg ctgattcgtc agagcgatcg
     4081 aaagtcaccg gtgtgtactt catattgttt gccttgaaat agtcggcaac gttgagttcg
     4141 gtatcagtac ccgcctgaat acagacggta gcgccatcca gttctttcgc gctttttagc
     4201 cccgctttat cgtgcgtcag gaagccaatg ccgtcgtaat aagtgacgcc agtaaatgcc
     4261 attcccatcc cggcgtcgcg agatgaagtc caggtcgtat tacgggagag caaatccact
     4321 tcccctgact gtaaagccgt gaagcgttct tttgctgtga gtggggtata tttcactttc
     4381 gtgtcgtcac caaatacagc agcggcaaca ctacgacaaa catcaacatc aacatcaaca
     4441 tcaacatcaa catcaacatc aacatcaaca tcaatacctg aaaacttacc gtctgcatcg
     4501 gcataagaga acccaagtaa tccatcactg atcccgcatt gcacaaaacc ttttttctga
     4561 acggcatcaa gcgtcgcgcc agcatgcgcc tgatttgcaa cggcaagcag cacgctggcg
     4621 gcagccagtg tggctatcat catctttttc ataatgcttc ctgtgaggcg aaaattatcg
     4681 ttataggacg tttgggaaac gtcttttacc tgtctgtggc catcctctta taagcaaaag
     4741 tagtgccagc ttttgcgcac gatttcgcgt cgcaataagc tgagtgtaga caggaaataa
     4801 taaaaacagc gccccgcaat ggtgcgaaaa tgaaacatgc gccacatttt ggcgcaaaat
     4861 atttacgcgt gttttactaa gcagaataat gattgttagc gtgagtatat ttctggtggg
     4921 aagtgtgaaa gttaaattga tgcgttattt cgaaagcagc gaaataacgc gatataacat
     4981 gctaaatcag cagagaatta gccagcagaa tatagcaata ttttatctta tgtaaagata
     5041 ctgtatcgtt aaacagagcg cgaaactccg cgccctgttc agttatttcg acagagcgat
     5101 gatccccatc gtcaggccag caacagccgc tgccccgccg gcaatagccc cagccgtttc
     5161 ccagttatcc tgagtcgtgc ctttcataca ggtattggtg tgaaccagac aaccctgatc
     5221 gtcataaacc ggaacgcagg gcgaatcgtg agcacagccc gccagcaatg cggtgagcaa
     5281 tgccacagga attaatcttt tcatggtgtt acctcagtaa taaacgctaa cgcttaataa
     5341 gttaactctc ttattaacga gctgaatgcc attttatcac cggaggttat aaatattgcg
     5401 gaatgaataa tgacaaatta tgtgaattgt aaaaatagtg aagggagcgg gaactataga
     5461 aagtttttaa agagtgagtg gaagaatatc ttattaattt ttatgggttt cactgaaaat
     5521 aataaaggca cccgaaagtg cctttatgtt tctgatttat cctttaaagc aacggcggat
     5581 caccacaaag aacaccggta ggaagaagat tgccagcaac gttgcagaga ccattccgcc
     5641 cattaccccg atacccactg cgttctgcgc gccactgcct gcaccgttac tgatagctag
     5701 cggtaatacg ccgagaataa aggcgagaga ggtcatcagg ataggacgca gacgcatacg
     5761 tactgccatt agtgtcgctt caacaacacc tttaccctct ttctccatga gatctttagc
     5821 gaactcaaca atcaaaatag cgtttttggc cgacaagcca attgtcgtta gcaagcccac
     5881 cataaagtag acgtcatttt tttgattaaa gagtgtcgcc gccagcagca cgccgacaat
     5941 ccctaacggc acgaccaaca taaccgagac aggaattgac cagctttcat agagtgcagc
     6001 aaggcacagg aaaacaacca caaaggaaat tgctactaga gcgggagcct ggtttcccga
     6061 taagcgttcc tgatacgaca tacccgtcca gtcataacca atgcccgcag gtaattttga
     6121 cgcaaggttt tccatcaacg ccatggcatc gccggaactg gttcctggcg cggcttcccc
     6181 ctgaatctcc attgacggca gaccgttgta gcgttccagt cgcggagagc catacaccca
     6241 atgtgaagtg gtaaaggccg agaatggcac catttcgccg ttggcgctgc ggacataaag
     6301 tttatcgaca tcttctggca gcatacggaa tttggcatcc gcctgaacat acaccttttt
     6361 cacgcgacca cggtcgatga agtcgttaac gtaagtccca cccaacgccg ttgaaatggt
     6421 ctgattgatg tcagaaagtg aaacacttaa tgcctgcgcc ttttcctggt caacttccag
     6481 tttaaactgc gcggtgtctt ccaggccatt aggacgcacg ctgactaagc tggcaggatg
     6541 ttgcgccgcc ataccaagca actggttacg ggcctgggtt agggcatcgt gacccagccc
     6601 agcctgatca attaactcaa agtcgaaacc cgttgccgtg cccagttcaa caatggctgg
     6661 catattgaat ggaatgacaa aaccgtcgcg gatcttgccc aattccattt tggcacgatg
     6721 gattaccgct tccgcactgt tttcatcacc attacgctct tcccacggtt tcagactgac
     6781 gaaggccata ccggcgtttt gtgcctggcc gctgaagcta aagccgttaa ccgtaaagac
     6841 actttcaacg ttcgctttct cgttcttcag atagtaatcc gtcacttgat ccaacacttt
     6901 ttgcgtccgc tcttgcgtcg cgccagcggg caactgaatc atggtcagaa agacaccctg
     6961 atcctcttca ggtaagaagg aagacggaag acgtaaaaac aacaccacca ttcctgcaac
     7021 aatcagcgca tagatcagta aatatcgtcc tgtggaaccg aggattttgc cgacgctgtt
     7081 ggtgtagtgg ttaacgctat gatcgaaggt ggtattaaac cagccgaaga aaccgccctt
     7141 attttcgtga tgctcagcag agacgggttt aagcagcgtt gcacataacg caggggtaag
     7201 aatcaatgcc accagaacag aaagtgccat tgccgaaacg atggtgatag agaactggcg
     7261 ataaattgcc ccagtagaac cgccgaagaa tgccatcgga ataaataccg ctgacagcac
     7321 catcgcgata cccaccagtg cgccctgaat ttgcgacatc gatttttccg tcgcttcttt
     7381 tggcgggagc ttatcctcca tcatcacgcg ctcgacgttc tccaccacca ctatcgcatc
     7441 atcgacgagc agcccgatgg caagcaccat cccgaacatc gttagtgtgt tgatggagta
     7501 accaaaagcg gcgaggatgg caaacgtccc taacaacacc acgggtaccg caatggtggg
     7561 gatcagcgtt gctcgcatat tctgcaagaa cagatacatc accaggaaca ccagcataat
     7621 ggcttcgaac agcgttttta ccacttcgtg aatagaaagc tggacgaatg gcgtggtgtc
     7681 ataagggtag agaaccttca ttccctgcgg gaagaatggc tgtaattccg ccagttttgc
     7741 cttaatggct ttcgcggtat cgagagcatt cgcgccggtt gccagcttaa tccccaggcc
     7801 cgccgccggt tttccgttga tacgagcgat aacgttatag ttttcaccgc caagttcaac
     7861 ccgtgcgaca tctttcaggc gtaccaccga gccgtcactg tttacgcgca gggtcacttt
     7921 gccgaattct tccggatttt ttaaccgcgt ttgagcaata atcgaggcat tcaactgttg
     7981 ccctggtaac gctggcgttc cgcccaactg tccggcagcg atctgatcgt tctgtacctt
     8041 caactggtta atcacatcaa ccggtgtcag tttatatttg tttagcagat cggcgtccag
     8101 ccagatacgc atcgcatact gtgcgccgaa aagctgtacg tcaccgacgc cattcagacg
     8161 gctaagcgta tctttaacgt tagaggccac atagtccgag atatcgtcct gtgtggtgcc
     8221 tgggttatca gagacaaaac ccgccaccat caaatagctg ctactggact tttcaacact
     8281 gatcccctgc tgctgaacct cctgcggcag caacggcgtg gcgagctgga gtttgttctg
     8341 cacctgcact tgcgcgatat caggatcggt cccggactgg aaggtaaggg taattgtcac
     8401 gctaccggcg gaatcgttgg tggaggacat atacatcagg ttatcgatac cattcatatt
     8461 ctgttcgata acctgcgtca ccgtatcctg cacggtctgc gcatcagcac ctggatagtt
     8521 tgccgaaaca gaaaccgcag gcggtgcaat ggttggatac tgagcgacgg gcaattgtag
     8581 gatcgccagt gcgcccgcca tcatcagaat aatggccagc acccatgcaa atatcggtcg
     8641 tcgaataaaa aagtttgcca tgtcagatta ccttacttcg atgcagtatc tgcgggggta
     8701 tcggtagtgg ctttaacctg ctctcccgga cgcgcttttt gcaggccgct gacaatgact
     8761 tgatcgccag atttcagacc ttcgctaatc aaccatttat cgccaatcgc ctgactggca
     8821 acgacagggc gcgcttccac ctgactttta tcgttaacaa tcagcacggt tgcatcacca
     8881 cgcggtgtgc ggctaacgcc ttgttgcggg ataagaatgg cgtcaggttg gacgccttca
     8941 tcaatccgtg cacgcacata catacccggc aaaagcgtat gttgcgggtt agggaagaca
     9001 gcacgtaggg ttatggagcc ggtgctttca tcaacggtca catcagagaa ttgcagcgta
     9061 cctttcaggg gataggtttg accgttttcc atgaccaact ctacgttgct ggtggcgttt
     9121 tccttatgca aatttccttg ctctacggat tgcttcagcc tcataaaatc gttgctggat
     9181 tgggtcacat caacgtagat aggatcgagc tgctggacag tcgccagttc agtcgtttgc
     9241 ccattagtga caagagcgcc ttcggtcacg gtcgatttgc cgatacgtcc gctaattggc
     9301 gcagtcactt tggtataagc gagattgatg cgagcgcttt cgactgtgcc ttttgcggca
     9361 atcacggcgg catcggcctg gcgagcatca gcaatggcct ggtcgtactc ctgctggctg
     9421 atgtatttcg tacccacgag cggaacgtaa cgttttaccg tcaaatgcgc gatggcggcg
     9481 gcggcttcac ttttcgccag ttcgcctttc gcgctgttat aatttgcctg ataggtcgcg
     9541 ggatcgatct ggtacaggga ctggcctgct tgtacatcgc tgccttcagt gaaattacga
     9601 ttcagtacga tcccgctaac ctgtgggcga acttcggcta tacggtaagc attggtgcgg
     9661 cctggtaatt cagtcttaac ttctaacggg gccgttttca caatatgaac ggtaacctgc
     9721 ggttcaccga cgtgagcttt ctcttctccc ttatcgttac aaccggcgat taaagccgcg
     9781 gagatcagaa taaaggaggg caggaggaaa aacctggcat gtttcgtcat tactattcct
     9841 caaaaaacca aaagcgcgtt atttacccag aaaggcaacg cgttaactcg cagaaagaaa
     9901 aatacagttt gctatcctac aaattatcat tcgtcgatgt aaggaatagt tatgaatact
     9961 ggcgtctcaa ggcacataaa cacaaaaaaa gattaatatt ctactgtttt attttgacgc
    10021 gggttgaaag aggcagaatt aaaacctcgt aaattgaaat atatattcat gtggcgaatg
    10081 tattttaggt aaataatata cattgtttat ttgacgattt atagcaactc aatgttaccc
    10141 tctcgtataa atacacatta gatgatagat taaccttcgc tattttctca ccctgtgtcg
    10201 aatatattta tttcctgaat aattaatcat ggcaaaaaga accaaagccg aagctctgaa
    10261 gacccggcaa gaactgattg aaactgccat cgcccagttt gcgcagcatg gcgtaagcaa
    10321 gacgacgctc aacgacattg ccgacgccgc taacgttacg cgtggcgcta tctactggca
    10381 cttcgaaaac aagactcaac tgtttaatga gatgtggttg caacagcctt cattgcggga
    10441 gttaatccag gaacacttga cggctggatt agagcatgac ccgtttcaac aattgcgtga
    10501 aaaattgatt gtcggcttgc aatatattgc caaaattccc cgccagcagg cgttgctgaa
    10561 aatcttatat cacaaatgtg aatttaatga tgagatgctg gccgagggag tgatacgcga
    10621 aaagatgggc tttaatccgc agactctccg cgaagtattg caggcgtgtc agcaacaagg
    10681 ttgtgtagca aataacctcg atttagatgt tgtgatgatt attattaatg gtgccttcag
    10741 cggaattgtt caaaactggt taatgaatat ggcgggttat gatctttata aacaagcacc
    10801 cgcgctggtc gataacgtat taagaatgtt catgccagat gaaaacataa cgaaattaat
    10861 tcatcaaacg aatgaattaa gtgtcatgta aattcacatt ctgtcctgaa aattcagttc
    10921 gtcacagtta accagtttta gtggattaac tgagttcata ttacggcatt tgtctgtttc
    10981 tgttgtcagc agttcaatcc actgcatcag taaagtatca aacagaaaaa cgaagacagc
    11041 gaaaacgacg agccaccaat acttgcgaat cattacctga gcctgtgcat gtttaaccaa
    11101 gtctggcagg aaatatacac gaaatgaata atctgaaaac caggcttaca cttcctttac
    11161 tttgcaatga gatcggggtc aacttcgctt aaccggcttc gttttgacag gttgccggtc
    11221 tttctttttt tcactttcgc cagttcttcc gcagagtaat gcgacgcgac atccagccgt
    11281 cgaagcccca ttttgatgta ctcgctgttg atctcaatac caatgaattt tcgcccgctg
    11341 gagacggcta cggcaccggt agtaaagcta ccggcaaacg ggtcgagaat gatatcgcct
    11401 gggttggaag aggcgagaat aatgcgtttc agtaaggctt ccggtttttg cgtcgggtgg
    11461 ttctcatatt catccatcaa ataacgcacg cgcggaaaat cccagacgtt acccggtact
    11521 ttttgatgat tgtatggctg tggaggattt ttgcgataat cgatcaacgc gcgctgcgat
    11581 ccggttttgg cttctaccag aatagcatca ccgttgaatg tgtagttctt tgcgtctttc
    11641 accatcatca ggatggggtc gtacatggag ccgtagtgtt ttttcgcctg tactccagaa
    11701 ctgtcatatg accagacgat gcgacttttg atggtaaaaa gcttgcggca ctggagatcg
    11761 ataaagggca tgttttccgt gctgttcatg atgtacatgc tgccctgctt tttcagaacg
    11821 cggtggcact ctgcaatcac ttcaaacagc cagtcgataa acagatcttc tttccaggct
    11881 tcgatcagac catcaaaatt tttaccgatg ttatatggtg ggtcggcaaa gatcagatcg
    11941 acactttcgg cggggatctt tttaagttcg gcaagcgcat caccgtgaat aatggtctta
    12001 gcttcattac caaaccgggt cggttcacat cctgttctca tggtcactcc ctttgtgaca
    12061 cctataaaaa aggcgcttcc ccatgccgag tagcgccttt ttaatcaagc atttagctaa
    12121 cctgaattag ttcatgccgt attttttcaa ttttttacgc agcgtaccac ggttgatgcc
    12181 catcatcagc gcagcacggg tctggttacc acgggtgtat tgcatcacca tgtccaacag
    12241 gggctgttct acttcagcca gtaccagctc atagaggtca ttcacatcct gaccattcag
    12301 ttgagcaaaa tagttcttca gtgcctgttt aaccgagtca cgcaggggtt tttgggttac
    12361 ctgatcctga gagttaacgg tagaaacggt cagtacgtca gaatttacgc gttgttcgaa
    12421 catagttctg tcagctcttt atttctgttt acgcaaaatt ttcgaagtat gcctccaacg
    12481 cctccagctg ttcgctggca tcctcaatgg cgttgaatgt gcgccgaaac tggtcatttg
    12541 gagcgtgttc ctggagatac caggaaacgt gtttacgtgc aattcggtac ccttttgccg
    12601 gaccataaaa gtcatgcagt tcccgaacgt gcgcgcaaag caagcgctta acctctgcca
    12661 aaggcagtgg gggcagcaac tccccagtgt ccagataatg ctggatttcc cgaaagatcc
    12721 agggtcttcc ctgagctgcg cggcctatca tcagggcatc cgcccctgta tagtcgagca
    12781 cagctctggc tttaagcggg tcagtaatgt cgccattcgc gataaccgga atggaaactt
    12841 tctgcttaac tgcccgaata ctgtcgtact cagcttctcc attgaacaaa caggcgcgtg
    12901 tacggccatg aatggtcaga gcctgaatgc cacagtcttc agccagttgg gcaatctctt
    12961 cgcagttacg gtgttccggt gcccagccag tgcgaatctt cagggtaaca ggaacgtcca
    13021 ctgcattgac gacctcggta aggatcgatt taacgacatc cgggtactgc aagagggctg
    13081 aacctgcgag cttgcgattc acttttttag ccgggcaacc catattgata tcaataatct
    13141 gggcaccgct ttccacgtta atacgtgctg catctgccat ttctttcgga tcgctaccag
    13201 caatttgcac ggtgcgaata ccgggttcat caatgtgcac catccgtaaa cgagatttgt
    13261 cgctttccca aacctgtggg ttagaagaca tcatctcgga tactgtcaat ccggctccca
    13321 tctcgtagca caacgtccga aaaggtctgt ctgtaatgcc agccatgggc gctgcgatca
    13381 ggcgatttct gagctgatat tgtccgatgc gcatgagtta agaaatgacc atactgtgac
    13441 tgcaaggcgg cgtatattac gcattttttg cacgagatga aaggccaaac tttgaccaat
    13501 cctctgagat ggatcaaaga attgcattta aaatgagcgt ggtgcgataa ttactcataa
    13561 aaatcatcat attagaaaat agtgactaaa atttacattc aaagaaattt gagtaagttc
    13621 tcaatttttc tttatgaatg aaaattttgg cacgcaaatt tgcgtaaata accggcaaat
    13681 ttacgtgcct tttgtgagct tgctcgcact tcgccccgcg tcaccctacg gcgatgcgaa
    13741 ggttaattct tacgaccggt aatacggcac cactcttctt tttccacgac cgggtccagt
    13801 gcgaagctat cggcataagc ttcacaaacg ctctctgcct ggcttgccag aataccggaa
    13861 aggcccagca aaccgcctga aaccggcagg acgctgatta acggtgccag ttcacgtaat
    13921 gggcctgcaa ggatgttcgc gaccaccacg tcggctttca tttcttctgg ctgatctttc
    13981 ggtaagtaga gttccagacg gtcagaaacg ccattacgtt cggcgttgtc gcggctagcc
    14041 tgaatcgcct gcggatcgat atcaatacca atggcttttg ctgcacccag tttcagcgcc
    14101 gcgatagcca gaatgccgga accgcagcca aagtcgatga ctgttttacc agttaaatcg
    14161 aggctgtcga gccattgtag gcacagagag gtagttggat gggtacccgt accaaacgcc
    14221 agccctgggt ctaacatcac gttgacggcg ttttcgtccg gcacatcacg ccagcttggg
    14281 cagatccaca gtcgttcacc aaagcgcatc gggtggaaat tatccatcca ttcgcgctcc
    14341 cagtctttat cttccagttg ttcgatttta tgcgcgaagc ctgcgccgag cagcggatgg
    14401 ttttccagaa tcgccaccac gtcgttcata tcggtttcag cgtcgaacag accaatcaca
    14461 tcggtgtcgc cccacaggcg cgtttcgccc ggcagcggct caaatactgg cgtatcgtgg
    14521 gtatcctgaa aagtgataga aacggcaccc gcttccatca gcgcatcgct aagatcttca
    14581 gcgttcgcgc cggtggtgtt cagtttcagt tggatccaag gcatggcaaa actctttatt
    14641 tatcagtagt caaaacggta gcttgcggga cggatgtacc gaaacggttt ccgaccagga
    14701 aagccagcaa acttagtagt aacgagggca cgatagggtg gaagcccagg tactgaatat
    14761 tcagcgtcgc gagtacggca tacagcacgc cgccaacgat catcgcactt agcgcgcctt
    14821 tggcgttggc gcgttcccag taaagaccca gcaccagcgg ccacaggaaa acggcttcca
    14881 acccaccgaa ggccagcaaa ttcagccaga tgatcatttc tggcggcttc caggcggcaa
    14941 gcagcagcaa cgcgccgaga actaacgtaa ttaccgccga catccgcttc agacgcgtct
    15001 cgttttgcat ttgatccgga cggatattca gatagagatc tttaatgatc gtagcggaac
    15061 tttgtagcaa ttgggcgtta attgtcgaca tgatcgcagc cataggtgca gccagaaaga
    15121 tcccggcagc aaacggtggc agcactttta ccattaacgt cgggatcacc agatccggta
    15181 cggtgagatc ggggatcact gcacgaccta acgctccggc caggtgcata ccgaacatca
    15241 ggattgcgac tacaatcgta ccgatgatga tcccccggtg taccgctttg ctgtctttat
    15301 aagagataca gcgcaccgca gtatgcggca ggccaatcac gccaaagcac accagtaccc
    15361 agaacgacgt cataaaggca ggcgacagaa tatcgtcagc gccttgtggc gtaaccagtt
    15421 gcggatcgat ggtttgcagc gtctctaccg cattacttaa accacctgcg gcatgtacca
    15481 cgccaataag cagcacaacg gtgccaatca gcatcacaag cccttgcatg gtgtcgttca
    15541 gcacgctggc gcgaaagccg ccaaaggcgg tatacaacgc aatgctgata ccgaaaatca
    15601 gcagcccggt ttcataagga atacccgccg cggtttccag caggcgcgca ccgccgataa
    15661 actgcacggt cattgcccca acgaacgcaa ccagcaaact caaactcgcc agccacacca
    15721 gaagacgact ctggtagcgg gcaaacagca tgtcgttcag cgtcactgca ttgtagcggc
    15781 gcgcaagaat cgcgaacttc ttgccgagaa taccgagcga aagccagact gcaggaagct
    15841 gaatcatcgc cagcaatacc caacccaggc cgtatttata agcagctcca ggcccgccga
    15901 taaacgaact tgcactgata taggtcgcgg tgagcgtcat cgccagcaca ataccgccca
    15961 tagagcggct gccgaggaaa tactcattaa ggaaggtacc ggtgctccgt ttacgcatcg
    16021 cataaacaga gataccgaac accaccacca gataggcgac cagcggtaga atcacttcaa
    16081 gctgcatcgt catcctccag tgggatatcg cgatagataa atttcaccat cgcccagcac
    16141 agtccaataa acagcagcgg cgtcaggatg caggccatct caaaccagcg cggaaagccg
    16201 gtaaaaccgg gggcaacgtc aggtaagtaa gcggctgcta accaaactgc cagatacaaa
    16261 agggtcagcc ccagcgccca gcgcgcctct ttatgggcct gaacaaaacg agtgtccacg
    16321 gaagggttcc tcctcatggg gggatacgag aaacgggcaa ttctacggca actcttcagg
    16381 cagggaaaat aatctgacag aaaattgccg ttcagtgctg ctgcaaaaag tcttcaatgt
    16441 cagccagtga ggatatccct tccatcggac cttgccgcat tacggcgagc gcgccgctgg
    16501 catttgcata ttgcagtgcc ttatgtgccg ggaaaccgga taagaaaaga gtgataaacg
    16561 ttgcgccaaa gcagtcgcct gcacccgttg gatcgataat ttcgatatcg tggcctgtaa
    16621 catgctgggc gtgtaatgta ccgtttttaa gcttgtaata gctggcccca cgctgggcgc
    16681 gttttatcgc cacatgtttt acgccgccgt ggagaagatc gctaacaatc tgttcttctg
    16741 acagattttt gtgacgcgcg aagaaaggga gttcgctttc gctggggatg aaaatatccg
    16801 tatattcaat caaataatcg agagcctgcg ccatttcagg aatgctcagc atctctttgc
    16861 gaatattggg atcgaaagaa acggtgccgc cagccgattt gatcgtcgtt attgctttac
    16921 gcatgacatc gatcatgcga aatgagaaca atgatgagcc cacaatatgg agatggttac
    16981 actgttttag cagatcctta tcaatgtgct cagcagtaaa caagccgcag gcgctgttag
    17041 ggatattaaa gacgaaatcg cgctgctggg gattttgata actcacgaac gccgtacctg
    17101 tgacggcatt gttcataaca tggatcccat cggtaatgac accttcatga cggaggcgct
    17161 ctataatgag tcggccaaaa tcatcattac caacacatcc gaagaagatg gcccgatggg
    17221 acagttttgc cacctgagca gcaaaaattg ctggcgcacc gctgggaaat ggcccgataa
    17281 actccccagg ctgagtgaat ttttgatgtg ggttgcggga caaaaactcg gccagcaatt
    17341 cgcccatagc gcagatagtt attgtcacaa aacccctctc attcctgaag cctttcgcga
    17401 ttggaccagg taaagcactc attactggta taaaggataa cgaaatcagc cgactgcaat
    17461 tgttgctgat attgttcgtt aatgctgcgg ctgacgatca cattttctgc ctgatgcaaa
    17521 tgcccgatag cagccgttga tggcgcagga tcggcggcaa cgataaccgt cttattctgg
    17581 gcatgatcga aacagagctg ccaggcagcg gccagtctgg gaacgttgat atttaaagta
    17641 ccatcagcat ccagatggtt gatttccaga atgctatgtg taatggtgaa atgctgaagt
    17701 gcctgttcaa gcggttttcc ggccagtgcg gtgtcggggc gcagcatttc actgccagcc
    17761 agtattattt cgccatcaat aaactgattt gccagcagcg catgttcggg atcgttggtg
    17821 atcagacgca gttttttcac ttcgctgagc aatggaatga tcttacggca gattgtccca
    17881 tgtccaagaa atagcgtgtc acgatcgcga attaaccgtg cgcaatgtcg tgctatttcc
    17941 atttgttgtg ccagagacaa tggcgcgatc ggttgtatcg cttctggttc agaggagagt
    18001 ggtgtcgcaa tagcaccgcc aaatgatcgc tttaaatatc cctgttgctc cagataactg
    18061 agatcgccgc ggatcgtcac gccagagaca ccaagttgcg cagataagtc atcaactttg
    18121 atttcacctt gggcggcaac aatttctgca atttttaatc tgcgtttcag taggttagac
    18181 gattttctcg gcacgttaac actcttcatt ggcctttaat gcgtaacact atagcccctt
    18241 gtatttttct ttgaaagtta tccttcaata atatcgacaa ttcgaaaaga aaatcatggg
    18301 tcaaaaatcg caacaaaaat agattaattc attgaaaaat aaatgaattt attcatattt
    18361 atgcagagat gttattggtt tcacttgtaa agtgaaaaac aaattaagtt atttttttgt
    18421 aagttatttt gatgatattc gacatgtatc acgctttttg ccgcttttgc tgtgctagtt
    18481 tgctttcaaa atgaaagtga atattctctt tcttcatttt gtaaggcgaa cgacaaataa
    18541 caggagctgc gatgtacatc atttcaagca aaaacatgct gaaaaaagcc cagtcagagg
    18601 gatatgccgt ccccgctttc aacattcata accttgaaac tttacaggta gttgttgaga
    18661 gcgctgcaca acttcgctct cccgttatgc tggcgggaac acccggtact tatcgttatg
    18721 gtggcgtggg aagtttaatt tcgttagtac aatcgctggc tcgcgagtac aacctgccgt
    18781 tagtcctgca tctcgaccat catgaagaga gtgatgacat ttttaacaag gttcgcgcag
    18841 ggatccgttc tgtcatgatt gatggctccc atttgccatt tgaagacaac attgcgcgag
    18901 tgcaagaagt taccaccttt tgccatcgct ttgatgttag cgttgaggcc gagctagggc
    18961 gtcttggcgg ccaggaggac gatctgctgg tggatgaaaa agattccgct tatacctcac
    19021 cagccgcagc tgcagagttt gttcaacgta cccaaattga ctccctggcc gtagcaatcg
    19081 gcacagcaca tggtttatat gcgcatgaac cacgactgga ttttgtgcgg ctggaacaga
    19141 ttcgtcagcg agtggagatt ccactggtgt tgcatggtgc ttcgggctta tcagaacagg
    19201 acgttcagca ctgtattcgc cgcggtattt gtaaagtgaa tgtcgcgaca gaattgaaaa
    19261 ttgcgtttgc cgatgcgtta aaaggatatt tctacaacaa tcctgcggca aatgatccac
    19321 gccactatat gcagcccgca aaggccgcca tgaaagaagt cgtaactcgt attattggtg
    19381 tctgtggtag tgaaggaaaa atttaagacg ttgtacccta caaaaacaat gaggattgtt
    19441 tatgaaaaat attaaattac ttggttcagc tatgttggtg agcctggcat tgttctcgca
    19501 aaattcgttg gcaaaagagt ataaaattgg tgcgtcatta ttaacacagc aacatccttt
    19561 ctatattgat cttgcgaatg ccatgaaaga agaggcaaaa aaagacaatg tcaatttaag
    19621 tgtct
//
LOCUS       DAJVUP010000073        19562 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.073, whole genome shotgun sequence.
ACCESSION   DAJVUP010000073 DAJVUP010000000
VERSION     DAJVUP010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19562
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.073"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            58..834
                     /gene="eutC"
                     /locus_tag="OQQ75_002310"
     CDS             58..834
                     /gene="eutC"
                     /locus_tag="OQQ75_002310"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000200160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HCS1976615.1"
                     /translation="MTSESCALDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTG
                     RAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDM
                     GRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVG
                     TPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSCYAVYSPRMATTVEAD
                     RTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR"
     gene            844..1503
                     /gene="eutL"
                     /locus_tag="OQQ75_002311"
     CDS             844..1503
                     /gene="eutL"
                     /locus_tag="OQQ75_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HCS1976616.1"
                     /translation="MPALDLIRPSVTAMRVIASVNAEFARELKLPPHIRSLGLISADS
                     DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA
                     MVAHIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY
                     GIDAALKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR
                     A"
     gene            1516..2016
                     /gene="eutK"
                     /locus_tag="OQQ75_002312"
     CDS             1516..2016
                     /gene="eutK"
                     /locus_tag="OQQ75_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutK"
                     /protein_id="HCS1976617.1"
                     /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL
                     VVEGDLAAGRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPD
                     APVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR
                     YRLKPH"
     gene            2062..3186
                     /gene="eutR"
                     /locus_tag="OQQ75_002313"
                     /pseudo
     CDS             2062..3186
                     /gene="eutR"
                     /locus_tag="OQQ75_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001735543.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator EutR"
     gene            complement(3120..4019)
                     /gene="hemF"
                     /locus_tag="OQQ75_002314"
     CDS             complement(3120..4019)
                     /gene="hemF"
                     /locus_tag="OQQ75_002314"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HCS1976618.1"
                     /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGG
                     RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV
                     PTSHANVRFFIAEKPGAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVY
                     PRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVE
                     RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY
                     DYQPKDGSPEAALSEFIKVRDWV"
     gene            complement(4023..4892)
                     /gene="amiA"
                     /locus_tag="OQQ75_002315"
     CDS             complement(4023..4892)
                     /gene="amiA"
                     /locus_tag="OQQ75_002315"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiA"
                     /protein_id="HCS1976619.1"
                     /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDEPLKTSNG
                     HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA
                     RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA
                     KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL
                     HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF
                     HWFDNQKAHSKKR"
     gene            5106..5531
                     /locus_tag="OQQ75_002316"
     CDS             5106..5531
                     /locus_tag="OQQ75_002316"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311332.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HCS1976620.1"
                     /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL
                     FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK
                     IQINVPEDNDMVLGMYERLGYEHADMLSLGKRLIEDEEY"
     gene            5518..5967
                     /locus_tag="OQQ75_002317"
     CDS             5518..5967
                     /locus_tag="OQQ75_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2919 domain-containing protein"
                     /protein_id="HCS1976621.1"
                     /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFIIAGASR
                     EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRASFPRTWHVLYFLLLLAQVVL
                     LCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFNEEKE"
     gene            6174..6749
                     /locus_tag="OQQ75_002318"
     CDS             6174..6749
                     /locus_tag="OQQ75_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoE-regulated lipoprotein"
                     /protein_id="HCS1976622.1"
                     /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ
                     GVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQG
                     TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY
                     QFRGEWRGPEGLMPSDDTLKNWKVSKIIWRR"
     gene            6845..7744
                     /gene="yfeX"
                     /locus_tag="OQQ75_002319"
     CDS             6845..7744
                     /gene="yfeX"
                     /locus_tag="OQQ75_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311329.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphyrinogen peroxidase"
                     /protein_id="HCS1976623.1"
                     /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF
                     EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR
                     HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI
                     KDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTR
                     VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM
                     LRFTKPVTGGYYFAPSLDKLMAL"
     gene            complement(7802..9106)
                     /gene="pbp4b"
                     /locus_tag="OQQ75_002320"
                     /pseudo
     CDS             complement(7802..9106)
                     /gene="pbp4b"
                     /locus_tag="OQQ75_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311328.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin binding protein PBP4B"
     gene            complement(9111..10535)
                     /gene="murP"
                     /locus_tag="OQQ75_002321"
     CDS             complement(9111..10535)
                     /gene="murP"
                     /locus_tag="OQQ75_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetylmuramic acid transporter subunit
                     IIBC"
                     /protein_id="HCS1976624.1"
                     /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD
                     PNIKTLEGVKSVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQL
                     KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN
                     FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF
                     FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM
                     PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS
                     LFPILSMAGAGQVGAALALYWRSQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMK
                     PFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAG
                     GILVAWVCGFIFTTLFGCRNVNLD"
     gene            complement(10539..11435)
                     /gene="murQ"
                     /locus_tag="OQQ75_002322"
     CDS             complement(10539..11435)
                     /gene="murQ"
                     /locus_tag="OQQ75_002322"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HCS1976625.1"
                     /translation="MQLEKMITEGSNAASAEIDRVSTLEMCRIINDEDKTVPLAVERV
                     LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG
                     EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR
                     TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK
                     VFGNLMVDVVATNEKLHVRQVNIVKNATGCNAEQAEAALIACERNCKTAIVMVLKNLD
                     AAEAKKRLDQHGGFIRQVLDKE"
     gene            11599..12456
                     /gene="murR"
                     /locus_tag="OQQ75_002323"
     CDS             11599..12456
                     /gene="murR"
                     /locus_tag="OQQ75_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MurR"
                     /protein_id="HCS1976626.1"
                     /translation="MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQL
                     GISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNTTALHLHSSITSDDSLEVIA
                     RKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI
                     GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCVEAARKQGATVIAITSL
                     ADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVASLKMIQR
                     SSELTQRLK"
     gene            12585..13376
                     /gene="ucpA"
                     /locus_tag="OQQ75_002324"
     CDS             12585..13376
                     /gene="ucpA"
                     /locus_tag="OQQ75_002324"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HCS1976627.1"
                     /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK
                     LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS
                     DDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA
                     AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPM
                     RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI"
     gene            13680..14696
                     /gene="cysP"
                     /locus_tag="OQQ75_002325"
     CDS             13680..14696
                     /gene="cysP"
                     /locus_tag="OQQ75_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate/sulfate ABC transporter
                     substrate-binding protein CysP"
                     /protein_id="HCS1976628.1"
                     /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN
                     PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKTDVVTYNQVTDVQILHDKGKL
                     IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY
                     TYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE
                     SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA
                     QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
                     AGRN"
     gene            14696..15529
                     /gene="cysT"
                     /locus_tag="OQQ75_002326"
     CDS             14696..15529
                     /gene="cysT"
                     /locus_tag="OQQ75_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysT"
                     /protein_id="HCS1976629.1"
                     /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSW
                     AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL
                     PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ
                     PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI
                     AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG
                     H"
     gene            15529..16404
                     /gene="cysW"
                     /locus_tag="OQQ75_002327"
     CDS             15529..16404
                     /gene="cysW"
                     /locus_tag="OQQ75_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HCS1976630.1"
                     /translation="MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQ
                     AFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLL
                     LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF
                     VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF
                     GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL
                     ENQEKRAQQEEHHEH"
     gene            16394..17491
                     /gene="cysA"
                     /locus_tag="OQQ75_002328"
     CDS             16394..17491
                     /gene="cysA"
                     /locus_tag="OQQ75_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter ATP-binding
                     protein CysA"
                     /protein_id="HCS1976631.1"
                     /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL
                     LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL
                     PRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL
                     DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA
                     DAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR
                     PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGE
                     RLFVGLQHARLYNGDERIETRDEELALAQSA"
     gene            17625..18536
                     /gene="cysM"
                     /locus_tag="OQQ75_002329"
     CDS             17625..18536
                     /gene="cysM"
                     /locus_tag="OQQ75_002329"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HCS1976632.1"
                     /translation="MSTLEQTIGNTPLVKLQRMGPNNGSEVWLKLEGNNPAGSVKDRA
                     ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA
                     MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ
                     QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPAEYLP
                     GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPGAVVV
                     AIICDRGDRYLSTGVFGEEHFSQGAGI"
     gene            complement(18539..18907)
                     /locus_tag="OQQ75_002330"
     CDS             complement(18539..18907)
                     /locus_tag="OQQ75_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfeK family protein"
                     /protein_id="HCS1976633.1"
                     /translation="MKKIICLVITLLMTLPAYAKLTAHEEARINAMLEGLSQKKDLIF
                     VRNGDEHTCDEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE
                     NAQPFLHALIAQTDKTVPAQ"
     gene            19012..>19562
                     /gene="pdxK"
                     /locus_tag="OQQ75_002331"
                     /gene_synonym="thiJ"
     CDS             19012..>19562
                     /gene="pdxK"
                     /locus_tag="OQQ75_002331"
                     /gene_synonym="thiJ"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HCS1976634.1"
                     /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL
                     NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQ
                     IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI
                     FELEILTGKNCRDLDSAIAAAKSL"
BASE COUNT         4496 a         4977 c         5509 g         4580 t
ORIGIN      
        1 caaacggccc ccgcgctgtc agaagcaaag tgcaccacca ccacctgtgc ggcaccggtg
       61 acctcggaaa gctgcgcgct ggatttaggt tctgcggaag caaaagcgtg gattggtgtt
      121 gaaaacccgc atcgcgcaga cgtattaaca gaactgcgtc gcagcaccgt ggcccgcgtt
      181 tgtaccggtc gtgccggtcc gcgtccgcgt acccaggcgt tgctgcgttt cctggccgat
      241 cactctcgtt cgaaagatac cgtactgaaa gaagtgccgg aagagtgggt gaaagcgcag
      301 ggcttgctgg aagtacgctc cgaaattagc gacaaaaatc tctacctgac tcgcccggat
      361 atgggccgcc gcctgtgtgc agaagctgtt gaagcgctga aagcacagtg tgttgctaat
      421 ccggacgtac aggtcgttat ttctgatggc ctgtcaactg atgccatcac cgtgaactac
      481 gaagagatcc tgccgccgct gatggcgggc ctgaaacagg ccgggctgaa agtcggcacg
      541 ccattctttg ttcgttatgg tcgcgtgaag attgaagatc agatcggtga gatcctcggc
      601 gcgaaagtgg tgatcctgct ggtgggggaa cgtccggggt tgggtcagtc agaaagcctc
      661 tcctgttacg ccgtttactc gccgcgtatg gcgaccaccg ttgaggccga tcgcacctgc
      721 atctctaaca ttcaccaggg cggcacgccg ccggttgaag ccgcagccgt cattgtggat
      781 ttggcgaaac gtatgctgga gcagaaagca tccggcatca acatgacccg ataaggaggc
      841 atcatgccag ctttagattt gattcgaccg tcggtaaccg ccatgcgggt gattgcctcc
      901 gttaacgctg aatttgcgcg tgaactaaaa ttgccgccgc atattcgtag cctcgggctg
      961 atttctgctg attccgatga cgtcacctac attgcggctg acgaagcgac caagcaggcg
     1021 atggtcgaag tggtatatgg ccgctcgctg tatgcgggag cagcacacgg accgtcaccg
     1081 actgccggtg aagtgctgat tatgcttggt gggccaaacc cggcggaagt gcgtgctggt
     1141 ctggatgcga tggttgcgca tattgaaaat ggcgctgctt tccagtgggc taatgacgca
     1201 gaaaacaccg cattcctggc acatgtagtt tcgcgtaccg gttcttatct ctcatcaacc
     1261 gccgggatca cgcttggcga tccgatggcg tatctggtgg caccgccgct ggaagcgacc
     1321 tacggcattg atgcagcgtt gaaatctgcc gacgtacagc tggtgaccta tgtcccgcca
     1381 ccgtctgaaa ccaactactc ggcagcattt ttaaccggta gccaggccgc gtgtaaagca
     1441 gcctgtaacg cctttaccga tgcagtgctg gaaatcgcgc gtaatccaat ccagcgtgcg
     1501 taacggaggt tgccgatgat caatgcactg ggattgctgg aagtggacgg catggtcgcc
     1561 gcgatagatg cagcggatgc catgctcaaa gcagctaacg ttcgtctgct cagtcacgaa
     1621 gtgcttgacc ctggtcgctt aacgctggtg gtggaaggcg atctggcggc gggtcgtgcg
     1681 gcgctggacg caggttgtgc tgccgcgatg cgtaccgggc gtgtcatcag ccgcaaggag
     1741 atcggtcggc cagacgatga cacccagtgg ctggttactg gctttaaccg ccagccgaag
     1801 caacccgtaa gggaacccga cgcgccagtt atcgtcgcgg aatctgctga cgagttgttg
     1861 gcgctgttaa catcagtacg tcagggaatg acggcaggag aagtggctgc ccactttggc
     1921 tggccgctgg aaaaagccag aaatgcgctc gaacagctct tttctgccgg gacgttacgt
     1981 aaacgcagta gtcgttatcg tctcaagccc cattaacctg tcggaggtgc tgggtgtcct
     2041 acaacacccg gcattaacat catgaaaaag acccgtacag ccaatttgca ccatctttat
     2101 catgaaccct tacccgaaaa cctgaagctc acgccgaagg tcgaagtgga taatgttcat
     2161 caacgacaga caacggatgt ctatgaacat gctttaacga ttaccgcctg gcagcagatt
     2221 tacgatcagc tgcatccggg caagtttcat ggtgaattta cggaaattct actcgatgat
     2281 attcaggttt ttcgtgaata caccggtctg gcgctgcgtc agtcgtgcct ggtctggccg
     2341 aactcgttct ggtttggcat tccggcgacg cgcggtgagc agggatttat cggttcgcaa
     2401 tgtctgggaa gcgcggaaat cgccacccgc cctggtggca ctgaatttga actgagcacg
     2461 ccggatgatt acacgatcct gggcgtggtg ctttctgaag atgtcatcac ccggcaggct
     2521 aactttttgc ataacccgga tcgggtatta catatgctgc gtagccagtc ggcgctggaa
     2581 gtgaaagagc agcataaagc cgcgctgtgg ggctttgtcc aacaggcgct ggcgacgttt
     2641 tgcgagaacc cggaaaatct ccatcagcct gcagtgcgaa aagtgctggg ggataatttg
     2701 ctaatggcga tgggggcgat gctggaagac gcgtaaccaa tggtgacggc ggaaagcatc
     2761 agtcatcaga gttaccgtag attactttcc cgcgcccgtg aatatgtgct ggaaaatatg
     2821 tctgagccgg tgacggtgct ggacttgtgt aatcaactgc atgtcagtcg ccgcacgcta
     2881 caaaacgcgt ttcacgctat tttaggcatt ggcccaaacg cgtggctgaa acgcattcgc
     2941 ctgaacgccg tacgccgcga actgataagc ccgtggtcgc aaagcacaac ggtaaaagac
     3001 gccgccatgc agtggggatt ctggcatctg gggcaatttg tcacggatta ccagcagctg
     3061 tttgccgaga agccgtcgtt gacgttgcat cagcggatgc gggaatgggg gggagggagt
     3121 tacacccaat ccctgacctt aataaactca cttaacgccg cttctgggct gccatctttt
     3181 ggctgataat catactccca gcgtaccagt ggcggcattg acatcaggat cgactcggtg
     3241 cgcccgccag tttgcaggcc aaacagagtg ccgcgatccc agaccagatt gaactcgaca
     3301 taacgaccgc gacggtagag ctgaaaattg cgctcgcgct cgccgtaggc cattgcttta
     3361 cgtcgctcta caattggtaa ataagcgtcg gtgtagcctt tgcctaccgc ctgcataaag
     3421 gcaaaacagt ggtcgaaatc tggcgtgttc agatcatcaa agaacagccc gccaataccg
     3481 cgctgttcgt tgcgatgttt gaggtagaag taatcgtcgc accacttttt gtaacgggga
     3541 taaacgtctt caccaaatgg caggcacagg tcacgggcgg tgcggtgcca gtgaatggcg
     3601 tcttcttcaa aaccatagaa aggggttaaa tcgaagccgc cgccaaacca ccagacgggc
     3661 tctgcacccg gtttttcggc aataaaaaaa cgcacattcg cgtggctggt gggaacatac
     3721 gggttatgcg gatgcactac cagtgaaacg cccatcgcct cgaaactgcg cccggcaagt
     3781 tccgggcgat gagcggtggc ggaagcaggc atcgcctcgc cgtggacgtg agaaaagttg
     3841 acgcctgcct gttcgaaaac accaccatta cgcaacaccc gactacgccc gccgccgcca
     3901 gcttcgcgct gccaactatc ttcgacaaat tctgcgccat cgacggcggt cagctgctga
     3961 caaatcgtat cctgaaggtt gagcagaaac tgtttaacct ggtgtgcgtc gggtttcata
     4021 acttatcgct ttttcgaatg tgctttctgg ttgtcgaacc agtggaaata actgatcacg
     4081 ccttcagcaa tcgctgtggc gattttctga cgaaacgccg ccgtgcctaa cagccgctct
     4141 tcttccgggt tggtgataaa cgaggtttcc accagcaccg aaggaaccga cggcgatttc
     4201 aacaccacaa acgcggcttg ttcggtgttg cggctgtgca gtttatgcac cggcttaatc
     4261 tttttcagaa tatgcgagcc aagcgtcagg ctgtttttaa tagtatcggt ttgcaccaga
     4321 tcaaacagca cttgctgcaa taggtgatcc ttgtcagtcg cctttttacc ggcaacttca
     4381 tcggcgcggt tttcgcgttc agacaggtat ttcgccattg cgctacttgc cccacggtta
     4441 gagagggcaa ataccgaagc accggcagct ttcgggttgg taaagccatc ggcatgaatt
     4501 gacataaaca gatctgcgcc atgtttatgg gcgatttcaa cgcgatcgta aagtgggata
     4561 aacgtatcgc cagaacgcgt taaacgcgca tcaatcccat gattacgcaa aatggaacgg
     4621 acgtttttag caatcgccag caccacatgt ttttctttcg aaccgttgcg tccgatcgct
     4681 ccggtatcaa ttccgccgtg gcctggatcg agaacaacga cacgtttgcc gccagatttt
     4741 ttggctttcg gcttgctgtg tccgttgctg gtttttaaag gttcgtcttt ggcgatggct
     4801 tgcgacattc ctgacaacgt cagggcagcc aaaccggctt tcagcacctg gcggcgcgaa
     4861 gtgagtgttt ttagtggttt aaaagtgctc atacggcctg agttgtaata ataaagttcc
     4921 agatgttata tcgtatcgcg taatccgtta cgacggtttg atgttgagaa ttgttttact
     4981 tttcatttca atagttgaca actccccatt atgccacttt ttcaaccgat tttcgtcaga
     5041 tattggctaa ttctaccgtt cacgccataa tcagcctttt aacccgcaaa aaggtaacga
     5101 ataccatgga gatacgcgta tttcgccagg aagatttcga agaggtcatc accctttggg
     5161 agcgttgcga cttgctgcgt ccgtggaacg atccggaaat ggacatcgag cgtaagatga
     5221 accatgacgt cagtttgttt ttggtcgctg aggtgaacgg tgaagtggtc ggaacggtga
     5281 tgggcggtta tgacgggcat cgcgggtctg cttattatct tggcgtgcat ccagagtttc
     5341 gtgggcgtgg gattgccaat gcgttgctta atcggctgga gaaaaagctg attgctcgtg
     5401 gctgcccgaa aattcagatc aatgtgccgg aagataacga catggtgctc ggaatgtatg
     5461 aacgcctggg atatgaacac gccgacatgc tgagtctggg taagcgtttg attgaagatg
     5521 aagagtactg agttccatcc tgtccattat gatgcgcacg gacgcctgcg tttacccttg
     5581 ctcttctggc ttgtgctatt gcttcaggcg cgaacctggg tgctgtttat cattgccggt
     5641 gcgtcgcgcg agcagggtac tgcgctgcta aatctgtttt atcccgatca cgataatttc
     5701 tggctggggt tgattcccgg tattccggcg gtgctggcgt ttttgttgag cggtcggcgg
     5761 gcttcgtttc ctcgcacctg gcatgtgctc tattttctgt tgctgttggc gcaggtggtt
     5821 ttactttgct ggcaaccgtg gctgtggctg aacggtgaat ccgttagcgg tatcggtctg
     5881 gcgctggtag tggcggatat tgtggcgtta atctggctgc tgaccaatcg acgtttacgc
     5941 gcttgtttta atgaagaaaa agaataacgc agaggtgcgc tttgtttatg ccggatgcgg
     6001 cgtgaacgcc ttatccggcc tacaaaacat cgaaaattca atatattgca ggagaaagta
     6061 ggcctgataa gcgtagcgca tcaggcaatt ttgtgtttgt catcaacctt taacggcact
     6121 ttttggtgaa tttgcactcc aagcaacgtt attgaataac caaaggaagt gacatgaaat
     6181 cgctgcgttt aatgttatgc gctatgccgt tgatgctgac cggctgttcc acgatgtcgt
     6241 cagttaactg gtcggctgct aacccgtgga actggtttgg atcgtccacc aaagtgagcg
     6301 agcagggtgt gggtgaatta acggcgtcca caccactgca agaacaagcc attgctgatg
     6361 cgcttgatgg cgattatcgc ctgcgcagcg gaatgaaaac cgcgaacggc aacgtggtgc
     6421 gcttttttga agtgatgaaa ggcgacaacg tggcgatggt gattaacggc gatcaaggca
     6481 cgatcagtcg cattgacgtg ctggatagcg atattcctgc tgacaccggt gttaaaatcg
     6541 gtacaccgtt tagcgacctt tacagcaaag catttggcaa ttgccaaaaa gctgatggtg
     6601 atgataatcg tgccgtcgaa tgtaaagccg aaggcagtca acatattagc taccagttca
     6661 gaggggaatg gcgtggtcct gaagggttaa tgccttcgga cgataccctg aaaaactgga
     6721 aagtcagtaa aattatctgg cggcgttaat ttgcgtctga acaaaccgcc gccgcgaaaa
     6781 aacacgtaaa atagcgctca acaatgccac ggattgcgtg gcattcttat tttcaggagg
     6841 aacaatgtct caggttcaga gtggcatttt gccagaacat tgccgcgcgg cgatttggat
     6901 cgaagccaac gtgaaagggg aagttgacgc cctgcgtgcg gccagtaaaa catttgccga
     6961 caaactggca acttttgaag cgaaattccc ggacgcgcat cttggtgcgg tggttgcctt
     7021 tggtaacaac acctggcgcg ctctgagcgg cggcgttggg gcagaagagc tgaaagattt
     7081 tccgggctac ggtaaaggcc ttgcgccgac gacccagttc gatgtgttga tccacattct
     7141 ttctctgcgt cacgacgtaa acttctctgt cgctcaggcg gcgatggaag cctttggtga
     7201 ctgcattgaa gtgaaagaag agatccacgg cttccgttgg gtggaagagc gtgacctgag
     7261 cggctttgtt gacggtacag aaaacccggc gggtgaagag acgcgccgcg aagtggcggt
     7321 tatcaaagac ggcgtggatg ccggcggcag ctatgtgttt gtgcagcgtt gggagcacaa
     7381 cctgaagcag ctcaaccgga tgagcgttca cgatcaggag atgatgatcg ggcgcaccaa
     7441 agaggccaac gaagagattg acggcgacga acgtccggaa acctctcacc tcacccgcgt
     7501 tgatctgaaa gaagatggca aagggctgaa gattgttcgc cagagcctgc cgtacggcac
     7561 cgccagtggc actcacggtc tgtacttctg cgcctactgc gcgcgtctgc ataacattga
     7621 gcagcaactg ctgagcatgt ttggcgatac cgatggtaag cgtgatgcga tgttgcgctt
     7681 caccaaaccg gtaaccggcg gctattactt cgcgccgtcg ctggacaagc tgatggcgct
     7741 gtaagcgttt ctgattctat gattaaaggc cagccagtaa caaaactgac tggccttttt
     7801 attacttttg cttcaacgcc gcatacacct gatcaactac ccaaccataa gttgcaatcg
     7861 gtaactgacc gctttcgaac atattgggat ttttttgtgg atcggcaact ggcgaatggg
     7921 gcttgttgct taacatcaca atcgccatat gattgaccgg atcgataacg gttactgtcc
     7981 cggtccagcc agtgtgaccg taggtttgcg ggcttgccag cgtgccaaac gtcggcgtca
     8041 tggtggcatt accattcacg cgccagccga ggccaaaagt ggcatcttcc ttagagctgg
     8101 tggtgaacat cttcaccgtt tccgcactga acagctgcac atcgccatag cccccgccgt
     8161 tcagcatcgt ttgcattaac accgcaatat cgccggtatt ggaaaacaaa cctgcgtgcc
     8221 cggaaacgcc gcccatcgaa taaaaggctt tttcatcgtg cacctgaccc cagagagtgg
     8281 aggtgcggat attcgggaaa tggatcacgc catcgcgggt attgccgttc aattccgtgg
     8341 cggcaatttg ttgcggttta aagcctttca gcagcgggtt aaataccgta tgtgtcaggc
     8401 cgagcgggcg ataaatcgac tcttcaacat agcggtcaag cggctgaccg gtaaccgact
     8461 cgacgataaa tccaagcagc atataatcga catcgctgta gatatgtttg ctgccgggct
     8521 gatattccag cggcgtgcgc ttgatcatct ccagcgtctg gcctttatcc taggaatata
     8581 acgcgcccgc gaccgcttta ttcgggtatt gcggatctgc cgggaaaccg ccgctgtgat
     8641 gcagcaggtc agaaatccgc agggtgtttt tgcctttaat ggtgtcattt ggactatcgg
     8701 caaaccccgg aatatatttc gcaatccgat cgtcaggatg cagtttgcct tcgctcatca
     8761 gcttttgcag ggcgaagttc gtggcgtaca ttttggtgtt tgaggccagg tcatacagcg
     8821 tcccggtggt ggctttgaca ggctgttcca tcaacacgct gccatcgtac tttttcgccg
     8881 ctccccaggc tttgcgatac acaatctgat tatctttaat gatcagcagg tttacgccgg
     8941 gataaccggc atcaacttgc tggctaatcc agcgatccat ctggttaagc cgtttgacgt
     9001 taaaccctgc tttctctggc gagctttctg tcagaacagg gtattttgcg gcgctgacgc
     9061 tacaactaac agccagcaga gaaagataga gcattgtccg tttcatgata tcagtccaga
     9121 ttgacgttac ggcagccaaa gagcgtggtg aaaataaacc cgcaaaccca tgccaccaga
     9181 atcccgccag cataaaccgc catggccgga aggatgcctt gtgcggaagt catcagcggc
     9241 agcgctacca gaccagacgg cccaaaggcg ctgtttaagc ccatcggcag accccaccag
     9301 gctatcaggc cgataaacaa accgcccgcc gcaccgccta aacaggcggt gacaaacggc
     9361 ttcatgcggg gcagggtgac accgtaaatc agcggttcac caacgcccag caggccggga
     9421 ataatcgccc cgcgtacctg actgcgtagc gcactgtgcg gttgcgaccg ccagtagagt
     9481 gccagcgccg cgcccacctg gcccgcgcct gccattgaaa ggatgggaaa taagctgttg
     9541 aatccctggc tgtccattaa cgcgaggtaa acaggaataa agccctgatg cacgccaaat
     9601 accacggcga tcaggaacag cccggctaaa accgcacaac cgaacggatt actgttcagg
     9661 tgcataaaca gccatgacat accttcgaat aaccagccac ccagcggcat aatgatcagg
     9721 tacgcaagcg tagcggtgat cagcagggtg attaacgagg tcagcagcat gtcgagatcg
     9781 tccggcataa agcggcgcac catgccttca atgcgggcgc aggcccacgc ggcaatcagc
     9841 acgccgataa tattgccgcg cggatcgatg ggcagaccaa agaaatcgtg aaaaccggcg
     9901 tagtaaccgg tggttgcagc ggggttataa ccgagcaaaa agagtgcggc aataattgcg
     9961 ccattgacgc ccgtgccgcc aaatgcctgg gcggcgttat agcccaccag aatcaccagg
    10021 aaggtgaaca aacctttgct gaacaccttc ataaaattca gcgcgtcggg tagcgtgccc
    10081 tgagcatctg ccggaacgtg catcaccgtg gcaattaacg tcgctatccc cagcagcaga
    10141 ccggcggcaa taaaaccggg gatcagcggc gtgaagatgg tggcgaattt ggcgagaaat
    10201 tgttgcacgc cggaggtttg tttggctttt aactgacgtt tgttctgggc ggcgatttct
    10261 gcggcatcct gtaccggtgc ctcgcccagc agctcgctca tcgcttttgc ggcacgatgc
    10321 gctttaccag gtccaaaaac gacctgcacc tggtcgctgg tcaaaatgac gctcttcacg
    10381 ccttccagcg ttttgatatt gggatcaacc agtgaactgt catgtacacc cagacgcagg
    10441 cgcgtcatac agttaccaca actggcgata tttcccggtc cgccgacacg ggtaagaatg
    10501 gtgttcagaa gttcactgct gatctctttg gccatgggtt attccttgtc taaaacctga
    10561 cgaataaagc cgccgtgttg atccaggcgt tttttagctt ctgcggcatc gagatttttc
    10621 agcaccatca caatggccgt tttacagttg cgctcgcagg caattaacgc cgcttccgct
    10681 tgttcggcat tacatccggt ggcgttttta acgatattga cctggcgcac atgcagtttt
    10741 tcgttggtgg cgaccacatc gaccataagg ttgccgaaca ctttgccgga tttaatcatc
    10801 agcccggtgg aaagcatatt gagcaccagt ttctgcgctg tacctgcttt catccgcgaa
    10861 gaaccggtaa caacttcggc acctacaatc ggtgtaatgg caaactcagc ggtggttgaa
    10921 acggcgctcc ccggattaca ggaaattccc actgtgcggc agccgagctg gcgtgcgtat
    10981 tccagtccgg caatcacata cggcgtgcga ccgctggcag caatgccaac caccacatcc
    11041 tgtgccgtta aattaatatt tttcagatca ttaacaccgc cttcccggct atcttccgcg
    11101 ccttccaccg cgtgctgaat ggcatattcg ccgccagcaa tcaaaccaac caccagaccc
    11161 ggtttcacgc cgtaggtggg cggacattcg ctggcatcca gaatccccag acgaccggat
    11221 gttcccgcac cgaggtaaat cagacgcccg ccgccgctta cctgggcgtg gataacatcg
    11281 atcgccgcgg cgatatccgg cagtacgcgc tcaacggcaa gcggtacggt tttatcttca
    11341 tcgttgataa tccggcacat ttccagcgtt gatacgcggt caatttcagc cgaggcggcg
    11401 ttcgagcctt cagtaatcat cttttcaagt tgcatcggtg gtgaccttac tatttacgat
    11461 caaataattg cagatgtatg gaatcatata tcctgaattg acagacttaa aggaatcatt
    11521 gagtctacac tcgcagagtg tgaagagcgt cataagaact taagcggaat ttatgctgcc
    11581 agcccaggag agtggaagat gttgtacctg acgaaaataa gcaatgcggg gagtgaattc
    11641 accgaaaacg agcaaaaaat cgctgacttt ctgcaggcca acgtgagtga gctgcaatcc
    11701 gtttcttcac ggcagatggc gaaacagctc ggcattagcc agtcgagcat agtgaaattt
    11761 gcccaaaaac tcggcgcgca aggatttact gaattgcgta tggcgttaat aggcgaatac
    11821 agtgctagcc gggagaaaac gaataccacg gcgctgcacc tgcacagttc gattaccagt
    11881 gatgattcgc tggaagtgat tgcccgcaaa ttgaatcgcg aaaaagagct ggcgctggag
    11941 caaacctgtg cgttgttcga ctacgcgcgg ctgcaaaaaa tcattgaggt catcagtaaa
    12001 gcaccgttta tccagataac gggcctgggc ggatcggcgc tggtggggcg cgatctgtcg
    12061 ttcaaactga tgaaaattgg ctatcgcgtg gcctgcgaag ccgacacgca cgtacaagcc
    12121 accgtttccc aggcgttgaa aaaaggcgat gtacaaatcg ctatctctta cagcggtagt
    12181 aaaaaagaga ttgtcttgtg cgtagaagcg gcacgaaagc agggggcaac ggtgattgcc
    12241 attacttctc tggctgactc tccgctgcgg cggctggcgc atttcacgct cgataccgtt
    12301 tccggtgaaa ccgaatggcg tagctcgtcg atgtctaccc gcacggcgca aaattctgtt
    12361 accgatttac tgtttgttgg tcttgtgcaa ctcaatgatg tggcgtcatt gaaaatgatt
    12421 cagcgcagca gtgagctaac acaacgcctg aaatgatgca taaagcagcg actggattga
    12481 gattttcctg aattagtgag ctgatccgca gcaatatttt gtttatcctg tattttcaga
    12541 gggaatggag tgtaacgctc tgtattaaca aggagagcat taaaatgggt aaactcacgg
    12601 gcaagacagc actgattacg ggcgcattgc agggaattgg cgaaggaatt gccagaactt
    12661 ttgcacgtca tggcgcgaac ctaatcttgc tggatatctc ccctgagatc gaaaagctgg
    12721 cggacgaact gtgtggtcgt ggtcatcgct gtacggcggt tgtcgccgat gtgcgtgacc
    12781 cggcgtcggt agccgcagct atcaaacgcg cgaaggaaaa agaagggcgc attgatatcc
    12841 tggtgaataa cgcaggcgtt tgtcgtctgg gcagtttcct cgatatgagc gatgacgatc
    12901 gcgatttcca tattgatatc aatattaaag gcgtatggaa cgtcacgaag gcggtgctgc
    12961 cggagatgat tgcgcgcaaa gatggtcgca ttgtgatgat gtcttcagtc actggtgata
    13021 tggtggccga tcctggcgaa acggcgtacg ccttaacgaa agcggcgatt gttggcctga
    13081 caaaatcgct ggcggtggag tacgcgcagt ctggtattcg cgttaacgcc atttgcccgg
    13141 gatacgtgcg cacaccaatg gcggaaagca ttgcccgcca gtcgaacccg gaagatccag
    13201 agtcggtgct gactgaaatg gcgaaagcaa tcccgatgcg tcgcctcgcc gatccgctgg
    13261 aagtcggcga actggcggcc ttcctcgcat cggatgaatc cagctattta accggtacac
    13321 agaatgtgat tgatggcggc agcacactgc cggagacggt tagcgtcggt atctgattca
    13381 cctctgtttc ctccctgcat gtgtggggag gatttcgtct tgaactaagt tcaccaggct
    13441 attttatttg tcattttggc cccgggcagt gctcgaaata ctcacgtact atgtgtacgc
    13501 tccggtttct ccgcgctgtc cgtgtccaaa ctgcctgcaa caattacgcc tgttgaacca
    13561 agttcttatt ccctttttaa cttccaaatc accaaacggt atataaaacc gttactcctt
    13621 tcacgtccgt tataaatatg atggctatta gaaagtcatt aaatttataa gggtgcgcaa
    13681 tggccgttaa cttactgaaa aagaactcac tcgcgctggt cgcttctctg ctgctggcgg
    13741 gccatgtaca ggcaacggaa ctgctgaaca gttcttatga cgtctcccgc gagctgtttg
    13801 ccgccctgaa tccgccgttt gaacagcaat gggcaaaaga taacggcggc gacaaactga
    13861 cgataaaaca atctcatgcc gggtcatcaa aacaggcgct ggcaattttg cagggcttaa
    13921 aaaccgacgt tgtcacttat aaccaggtga ccgacgtaca aattctgcac gacaaaggca
    13981 agctgatccc ggctgactgg cagtcgcgcc tgccgaataa tagctcgccg ttctactcca
    14041 ccatgggctt cctggtgcgt aagggcaacc cgaagaatat ccacgactgg aacgacctgg
    14101 tgcgctccga cgtgaagctg attttcccga acccgaaaac gtcgggtaac gcgcgttata
    14161 cctatctggc ggcatggggc gcagcggata aagctgacgg tggcgacaaa gccaaaaccg
    14221 aacagtttat gacccagttc ctgaaaaacg ttgaagtgtt cgatactggc ggtcgtggcg
    14281 cgaccaccac ttttgccgag cgcggcctgg gcgatgtact gatcagcttc gagtcggaag
    14341 tgaacaacat ccgtaaacag tatgaagcgc aaggctttga agtggtgatt ccgaaaacca
    14401 acattctggc ggaattcccg gtggcgtggg tcgataaaaa cgtgcaggcc aacggtacgg
    14461 aaaaagcagc aaaagcctac ctgaactggc tctacagccc gcaggcgcag accatcatca
    14521 ccgactatta ctaccgcgta aataacccgg aagtcatgga caaactgaaa gataaattcc
    14581 cgcagaccga gctgttccgc gtggaagaca aatttggctc ctggccggaa gtgatgaaaa
    14641 cccacttcac cagcggcggc gagttagaca agctgttagc ggcggggcgt aactgatgtt
    14701 tgcagtttca tcaagacgcg tgctgccggg ctttacctta agcctcggca ccagtctgct
    14761 gtttgtgtgc ctgattttgc tgctgccgct ctccgcgctg gtgatgcagc tggctcagat
    14821 gagctgggcg cagtactggg aggtgatcac caacccacaa gtggtcgcgg cctacaaagt
    14881 gacgctgctg tcggcgtttg tggcatcgat ttttaacggc gttttcggtc tgctgatggc
    14941 gtggatttta acacgttatc gctttccggg ccgcacgctg cttgatgcgc tgatggattt
    15001 accctttgcg ctgccaacgg cagtcgccgg tttaacgctg gcctcgctct tttccgtaaa
    15061 cggtttttac ggtgaatggc tggcgaagtt tgatatcaaa gtcacctata cctggcttgg
    15121 tattgcggtg gcgatggcct ttaccagcat tccgtttgtg gtgcgtaccg tgcagccggt
    15181 gctggaagag ttaggcccag aatatgaaga agcggcggaa acgcttggtg caacgcgctg
    15241 gcagagtttc tgcaaagtgg tgctgccgga actttctcca gcgctggtgg cgggcgtggc
    15301 gttgtcgttt acccgtagtc ttggtgagtt tggcgcggtg atatttatcg ccgggaacat
    15361 cgcttggaag acggaagtga cgtcgctgat gatttttgtg cgcttgcagg agtttgatta
    15421 cccggcggcg agcgcgattg cttcggtgat cctcgcggca tccctgctgc tgctgttctc
    15481 aattaacact ctgcaaagtc gctttggtcg gcgtgtggta ggtcattaat ggcggaagtt
    15541 acccaattga agcgttatga cgcgcgcccg attaactggg gcaaatggtt tctgattggc
    15601 atcgggatgc tggtatcggc gttcatcctg ctggtgccga tgatttatat cttcgtacag
    15661 gcgttcagca aagggctgat gccggtttta cagaatctgg ccgatccgga catgctgcac
    15721 gccatttggc tgacggtgat gattgcgctg attgccgtac cggtgaacct ggtgttcggc
    15781 attctgctgg cgtggctggt aacgcgcttt aacttccccg gacgccagtt actgctgacg
    15841 ctactggaca ttccgtttgc cgtatcgccg gtagttgccg gtctggtgta tctgctgttc
    15901 tacggctcta acggtccgct gggcggctgg ctggatgaac ataatttgca gattatgttc
    15961 tcctggccgg gaatggtgct ggtcaccatc tttgtgacct gtccttttgt ggtgcgcgag
    16021 ctggtgccgg tgatgttaag ccagggcagc caggaagacg aagcggcgat tttgcttggc
    16081 gcgtctggct ggcagatgtt ccgtcgcgtc acattgccga acattcgctg ggcgctgctg
    16141 tatggtgtgg tgctaaccaa cgcccgcgcg attggcgagt ttggtgcggt gtcggtggtt
    16201 tccggctcga ttcgcggcga aacactttcg ctgccgttac agattgaatt gctggagcag
    16261 gactacaaca ccgtcggctc ctttaccgcc gccgcgctgt tgacgctgat ggcgattatc
    16321 accctgtttt taaagagtat gttgcagtgg cgtctggaga atcaggaaaa acgcgcgcag
    16381 caggaggagc atcatgagca ttgagattgc caatattaag aagtcgtttg gtcgcaccca
    16441 ggtgctgaac gatatctcac tggatattcc ttctggtcag atggtcgcgc tgctggggcc
    16501 gtccggttcc ggaaaaacca cgctgctgcg cattattgcc gggctggagc atcaaaccag
    16561 cgggcatatt cgcttccacg gtaccgacgt gagccgcctg cacgcacgcg atcgtaaagt
    16621 cggtttcgtg ttccagcatt acgcgctgtt ccgtcatatg acggtgttcg acaatatcgc
    16681 ttttggcctg acggtgctgc cacgtcgcga gcgcccgaat gccgcagcca tcaaagcgaa
    16741 agtgacaaaa ttgctggaga tggtccagct tgcgcatctg gcggatcgtt atccggcaca
    16801 gctttccggc ggccagaaac agcgcgtggc gctggcgcgc gcgctggctg ttgaaccgca
    16861 aattctcctg cttgatgaac cgtttggcgc gctggatgcg caggtgcgta aagagctgcg
    16921 tcgctggctg cgtcaactgc atgaagagct gaaattcacc agcgtgttcg tgacccacga
    16981 ccaggaagaa gcgaccgaag tagctgatcg tgtagtggtg atgagccagg gcaatatcga
    17041 gcaggctgat gcgccggacc aggtatggcg cgaaccagcg acccgatttg tgctcgaatt
    17101 tatgggcgaa gtgaaccgcc tgcagggaac cattcgcggc gggcagttcc atgttggcgc
    17161 acatcgctgg ccgctggggt atacgcctgc gtatcagggg ccggtggatc tcttcctgcg
    17221 cccgtgggaa gtggatatca gccgccgtac cagtctcgat tcgccgctgc cggtacaggt
    17281 actggaagcc agcccgaaag gtcactacac ccaattagtg gtgcagccgc tggggtggta
    17341 caacgaaccg ctgacggtcg tgatgcatgg cgacgatgcc ccgcagcgtg gcgagcgttt
    17401 attcgttggt ctgcaacatg cgcggctgta taacggcgac gagcgtatcg aaacccgaga
    17461 tgaggaactt gctctcgcac aaagcgcctg ataggttgag tgaatgttaa acgcccggag
    17521 gcgcttcccg cgatccgggc tttttaatgg caaggtttgt aacctgtaga cctgataaga
    17581 cgcgcaagcg tcgcatcagg caacaccacg tatggataga gatcgtgagt acattagaac
    17641 aaacaatagg caatacgcct ctggtaaagt tgcagcgaat ggggccgaat aacggcagtg
    17701 aagtctggtt gaaactggaa ggcaataacc cggcaggttc ggtgaaagat cgtgcggcac
    17761 tttcgatgat cgtcgaggcg gaaaagcgcg gggaaattaa accgggtgat gtgttaatcg
    17821 aagccaccag tggtaacacc ggcattgcgc tggcaatgat tgccgcgctt aaaggctatc
    17881 gcatgaaatt gctgatgccc gacaacatga gccaggaacg ccgtgcggcg atgcgtgctt
    17941 atggtgcgga actgattctt gtcaccaaag agcagggcat ggaaggtgcg cgcgatctgg
    18001 cgctggagat ggcgaatcgt ggcgaaggaa agctgctcga tcagttcaat aatcccgata
    18061 acccttacgc ccattacacc actaccgggc cggaaatctg gcagcaaacc ggcgggcgca
    18121 ttacccattt tgtctccagc atgggaacaa ccggcactat caccggcgtt tcacgcttta
    18181 tgcgcgaaca atccaaaccg gtgaccattg tcggcctgca gccggaagaa ggcagcagta
    18241 ttcccggcat tcgccgctgg cctgcggaat atctgccggg gattttcaac gcttctctgg
    18301 tggatgaggt gctggatatt catcagcgcg atgcggaaaa caccatgcgc gaactggcgg
    18361 tgcgggaagg aatattctgt ggcgtcagct caggcggcgc ggttgctgga gcactgcggg
    18421 tggcaaaagc taaccctggt gcggtggtgg tagcgatcat ctgcgatcgt ggcgatcgct
    18481 acctctccac cggagtgttt ggggaagagc attttagcca gggggcgggg atttaagatt
    18541 attgcgcagg caccgtttta tccgtctgcg caattagcgc atgtaaaaaa ggctgtgcgt
    18601 tctcatcgct cttaccgggg atcttcacaa tatacggctt cccggtaatc gatgacgacg
    18661 aagcaacctt atcaataaac tgctcggcag tgtcaatgcg gttacgggta ttgccgagct
    18721 tcagacgcag atgagaaacc gcttcatcgc aggtatgttc atcaccgttg cgcacaaata
    18781 tcaaatcctt tttctgtgat aatccctcca gcatggcgtt gatgcgggct tcttcatggg
    18841 cagttaactt cgcgtaagcg gggagtgtca ttagtagtgt aatgaccaga caaatgattt
    18901 tcttcattga attaccttat ccttgttttg taatagccga tttgactgcc agaatcaggt
    18961 aaagtttcgg ttggaatacg atgaggatca tcggcaagga gaaaaaatta aatgagtagt
    19021 ttgttgttgt ttaacgataa gagcagggcg ctgcaggcgg atatcgtcgc cgtgcagtcg
    19081 caggtggttt acggcagcgt gggcaacagc attgccgtgc ctgctatcaa acagaacggt
    19141 ctgaatgttt ttgccgtgcc gacggtattg ctgagcaata cgccgcatta tgacactttc
    19201 tacggtggtg cgattccgga tgaatggttt agcggttatt tgcgtgcgct tcaggagcgt
    19261 gatgcgctgc gccagctgcg cgctgtaacc acgggctata tgggaacggc atcgcaaatc
    19321 aaaatccttg ccgagtggct gactgcgcta cgcaaagacc atcctgacct attgatcatg
    19381 gtcgatccgg tgattggcga tattgatagc ggaatttatg tcaaacctga ccttcccgag
    19441 gcgtatcgac aatatttact gccgctggcg cagggaatta cccccaatat ctttgagctg
    19501 gaaatcctga ccggtaaaaa ttgccgcgat ctcgacagtg ccattgctgc cgcaaaaagt
    19561 ct
//
LOCUS       DAJVUP010000074        19367 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.074, whole genome shotgun sequence.
ACCESSION   DAJVUP010000074 DAJVUP010000000
VERSION     DAJVUP010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.074"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(31..1860)
                     /gene="glmS"
                     /locus_tag="OQQ75_002332"
     CDS             complement(31..1860)
                     /gene="glmS"
                     /locus_tag="OQQ75_002332"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HCS1976635.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIMVVHNGII
                     ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV
                     IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE"
     gene            complement(2022..3392)
                     /gene="glmU"
                     /locus_tag="OQQ75_002333"
     CDS             complement(2022..3392)
                     /gene="glmU"
                     /locus_tag="OQQ75_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HCS1976636.1"
                     /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN
                     ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILISNGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ
                     RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDT
                     NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDVNLAAACTIGPFARLRP
                     GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR
                     RPVKKK"
     gene            complement(3743..4162)
                     /gene="atpC"
                     /locus_tag="OQQ75_002334"
     CDS             complement(3743..4162)
                     /gene="atpC"
                     /locus_tag="OQQ75_002334"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HCS1976637.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQSGNVTVLADTAIRGQDLDEARAMEAKRKA
                     EEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM"
     gene            complement(4183..5565)
                     /gene="atpD"
                     /locus_tag="OQQ75_002335"
     CDS             complement(4183..5565)
                     /gene="atpD"
                     /locus_tag="OQQ75_002335"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HCS1976638.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     EEAVEKAKKL"
     gene            complement(5592..6455)
                     /gene="atpG"
                     /locus_tag="OQQ75_002336"
     CDS             complement(5592..6455)
                     /gene="atpG"
                     /locus_tag="OQQ75_002336"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HCS1976639.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLAHGNLEYKHLYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE
                     MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(6506..8047)
                     /gene="atpA"
                     /locus_tag="OQQ75_002337"
     CDS             complement(6506..8047)
                     /gene="atpA"
                     /locus_tag="OQQ75_002337"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HCS1976640.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(8060..8593)
                     /gene="atpH"
                     /locus_tag="OQQ75_002338"
     CDS             complement(8060..8593)
                     /gene="atpH"
                     /locus_tag="OQQ75_002338"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HCS1976641.1"
                     /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV
                     SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(8608..9078)
                     /gene="atpF"
                     /locus_tag="OQQ75_002339"
     CDS             complement(8608..9078)
                     /gene="atpF"
                     /locus_tag="OQQ75_002339"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HCS1976642.1"
                     /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(9140..9379)
                     /gene="atpE"
                     /locus_tag="OQQ75_002340"
     CDS             complement(9140..9379)
                     /gene="atpE"
                     /locus_tag="OQQ75_002340"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HCS1976643.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(9426..10241)
                     /gene="atpB"
                     /locus_tag="OQQ75_002341"
     CDS             complement(9426..10241)
                     /gene="atpB"
                     /locus_tag="OQQ75_002341"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HCS1976644.1"
                     /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID
                     SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL
                     ILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(10250..10630)
                     /gene="atpI"
                     /locus_tag="OQQ75_002342"
     CDS             complement(10250..10630)
                     /gene="atpI"
                     /locus_tag="OQQ75_002342"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HCS1976645.1"
                     /translation="MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGG
                     LAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
     gene            complement(11247..11870)
                     /gene="rsmG"
                     /locus_tag="OQQ75_002343"
     CDS             complement(11247..11870)
                     /gene="rsmG"
                     /locus_tag="OQQ75_002343"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HCS1976646.1"
                     /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV
                     RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR
                     FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI"
     gene            complement(11934..13823)
                     /gene="mnmG"
                     /locus_tag="OQQ75_002344"
     CDS             complement(11934..13823)
                     /gene="mnmG"
                     /locus_tag="OQQ75_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HCS1976647.1"
                     /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV
                     LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
                     HGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS
                     GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            complement(14202..14645)
                     /gene="mioC"
                     /locus_tag="OQQ75_002345"
     CDS             complement(14202..14645)
                     /gene="mioC"
                     /locus_tag="OQQ75_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HCS1976648.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDL
                     SASGIWLIISSTHGAGDIPDNLSPFYEALQEQKPDLSAVHFGAIGIGSREYDTFCGAI
                     DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK"
     gene            complement(14735..15193)
                     /gene="asnC"
                     /locus_tag="OQQ75_002346"
     CDS             complement(14735..15193)
                     /gene="asnC"
                     /locus_tag="OQQ75_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HCS1976649.1"
                     /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT
                     GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQHPIMRTIKP"
     gene            15345..16337
                     /gene="asnA"
                     /locus_tag="OQQ75_002347"
     CDS             15345..16337
                     /gene="asnA"
                     /locus_tag="OQQ75_002347"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HCS1976650.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPF
                     LPDQIHFVHSQELLSRYLDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY
                     DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL"
     gene            complement(16342..17793)
                     /gene="viaA"
                     /locus_tag="OQQ75_002348"
     CDS             complement(16342..17793)
                     /gene="viaA"
                     /locus_tag="OQQ75_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HCS1976651.1"
                     /translation="MLTQDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA
                     AITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL
                     NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ
                     ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQ
                     LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGG
                     FNEQCAKAFCLALMRIALAENRRCYIMLSSTEIVRYELSGPQGIEQAIRFLSQQFRGG
                     TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(17787..19283)
                     /gene="ravA"
                     /locus_tag="OQQ75_002349"
     CDS             complement(17787..19283)
                     /gene="ravA"
                     /locus_tag="OQQ75_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HCS1976652.1"
                     /translation="MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFL
                     LGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTS
                     GYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEA
                     DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKE
                     IGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVD
                     LILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKT
                     ALTVIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLS
                     KGGEIRGKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQL
                     EELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC"
BASE COUNT         4627 a         5117 c         4850 g         4773 t
ORIGIN      
        1 tcggcagccc ttttttatct atgatagtga ttactcaacc gtaaccgatt ttgccaagtt
       61 acgcggctgg tcaacgtcgg tgcctttgat cagcgcgaca tggtaagcca gcagctgcag
      121 cggaacggtg tagaagatcg gtgcaatcac ctcttccaca tgcggcatct cgatgatgtg
      181 catgttatcg ctacttacaa aacccgcatc ctgatcggcg aagacataca actgaccgcc
      241 acgcgcgcga acttcttcaa tgttggattt cagtttttcc aacagttcgt tgttcggtgc
      301 aacgacgata accggcatat ccgcgtcaat cagcgccagc gggccgtgtt tcagctcgcc
      361 agcagcgtag gcttcagcgt gaatgtagga gatctctttc agcttcaatg cgccttccag
      421 tgcgattggg tactgatcgc cacggcccag gaacagtgcg tgatgtttgt cagagaaatc
      481 ttctgccaga gcttcaatgc gtttgtcctg agatagcatc tgctcaatac ggctcggcag
      541 cgcctgcaga ccatgcacaa tgtcatgttc aatggaggca tccagacctt tcaggcgaga
      601 cagcttcgcc accagcatca acagcacagt taactgagtg gtgaatgctt tagtggacgc
      661 cacgccgatt tccgtacccg cgttggtcat cagcgccaga tcggattcgc gcaccagaga
      721 agaacccgga acgttacaga ttgccagcga accaaggtaa cccagctctt tcgacagacg
      781 caggcccgcc agggtatccg cggtttcgcc agactgtgac aaggtgatca tcaggctgtt
      841 acgacgcacg gcagatttac gatagcggaa ttcagaggcg atttcgacgt cgcacggaat
      901 acctgccagc gattcaaacc agtagcggga aaccataccg gagttataag aagtaccaca
      961 ggcgaggatc tgaatatgct caaccttcga cagcagttcg tcggcgttcg gtcccagctc
     1021 gcttaaatca acctgaccgt ggctgatgcg cccagtaagg gtgtttttga tcgcgttcgg
     1081 ctgttcgtag atctctttct gcatgtagtg acggtaaata cctttatcgc ccgcgtcata
     1141 ttgcagattg gattcgatat cctgacgttt tacttccgcg ccagttttat cgaagatgtt
     1201 taccgaacgg cgagtaattt ccgcaatatc gccctcttca aggaagataa agcgacgggt
     1261 caccggcagc agcgccagct ggtcagaagc gataaagttt tcgcccatac ccaggccaat
     1321 caccagcgga ctaccagaac gtgccgccag cagggtatcc gggtgacggg agtccatgat
     1381 cactgtaccg tacgcaccgc gcagctgcgg gatagcacgc agaacagcct cacgcagagt
     1441 cccgccttgt tttagctccc agttcaccag atgggcaatc acttcggtgt cggtttcaga
     1501 aacgaaggta tagccacgcg cttttaactc ttcacgcagc ggttcatggt tttcgatgat
     1561 gccgttatgc accaccataa tgtgttcaga aacatgcgga tgcgcgttag cttctgaagg
     1621 ttcaccgtgg gtcgcccagc gagtgtgagc aataccggtg ccgccatgca gaggatgttc
     1681 ttccgctgcc tgagccagca tctggacttt accgaggcga cgcaggcggg tcatatgacc
     1741 ttccgcatca acaacggcca gaccagcaga gtcatatccg cggtattcca gacgacgtaa
     1801 accttcaaga aggatttctg ctacatcacg ttgcgcgatc gcgccaacaa ttccacacat
     1861 agtttttgat tccgatttat atcgttgtcg gtcaacctgt atgcccgttt tttcgggcgc
     1921 cccgagcctt gtagagagtg gggttatttt tatagttact tcttgtggga gggagattat
     1981 gttatctcct catcccagat gaccggatta cccggccaga attacttttt ctttaccgga
     2041 cgacgccagc cttctttctg agtctgcggc acacggctga tagctaatgc attttcgccg
     2101 acattacgcg tcacagttgt acccgcagca atggtcgcgc ctttgcctac tgttaccggg
     2161 gccaccagct gagtgtcgga accgacaaac acatcgtcgc cgataatggt cttaaattta
     2221 ttcgcaccat cgtagttgca ggtaatggtt cccgcgccga tgttaacgtt atcgccaatt
     2281 tccgcatcgc ccaggtaagt cagatgacca gctttcgagc ctttacccag acgcgctttt
     2341 ttcatctcaa caaagttacc gacgtgtgca ccttccagca actcagcacc aggacgcaga
     2401 cgggcaaacg ggccaatagt acaggccgct gccagattca cgtcttccac aacggtatac
     2461 ggactgattt cgcaatcatc gccaatcacg ctgtttttaa tcacgcaacc ggtgccgatt
     2521 ttcacgcgat gaccgagagt cacgttgccc tcgatgataa cgttagtatc aatttcaaca
     2581 tcgcgcccgt gagtaagcgt accgcgcaga tcaaaacgcg ccggatcgcg cagcataacg
     2641 cctgctaaca gcagtttttc agcctgttcg gactggtaaa cgcgctccag acgggagagt
     2701 tgcaggcggt tattcacacc ttctacttcg cttaaacgtt gcggatgaac ggcgacgatt
     2761 tcacgccctt cctgatacgc cagcgcaata atgtcggtga tgtagtattc gccctgagca
     2821 ttattgttgg tcagcttcgc cagccagcgt ttcatatctg cgccgttaga gatcagaatg
     2881 ccggtgttga tctcctgaat ctgacgctgc tcgtcggtgg catctttgtg ctcaacaatg
     2941 ccggtaactt tgccattttc acgggtgata cgtccataac cggtcggatc atccagtttc
     3001 accgtcagca gaccaatgcc accctgcggt ttagcatcac gcaggcgctg gagtgtttcg
     3061 acagagatca gcggcacgtc gccgtagagc attaaaatgt cttcatcatc ggcaaagaaa
     3121 ggtgcggcct gctgcattgc atgacccgta cccagctgct ctgcctgaag cacccagtta
     3181 aggttgtcgt ctttcagcgc ctgtttaagc agatcgccgc cgtgaccgta caccaggtga
     3241 acgtgcgctg cgcctaattc attcgcagca tcaatgacat gctgaaccat cgctttcccg
     3301 gcaagggtat gcagcacttt cggaagatcg gaatacatgc gcgtgccttt gcctgcggca
     3361 aggatcacta cgctcatagc attattcaac atacgcgtcc tgactgtaat ttgagaacga
     3421 atttaaaccg cttcaccttg aaaaaactac atttttttca tcgtgaaatg gacagaggat
     3481 aaattgttca ataacggatt atccccgctg acgaaagtgc cattttcgac catcgtcacg
     3541 ccttttgtct gcagaaaatt aaggcagtac cttcatttaa gcgtcaggtg gatgtttttg
     3601 ctcttatttc gatcaatgaa taaacgggaa aacaggggtg ttttatatca gcaggatcta
     3661 tgtgaacgct cttcaggacg gatcacgcgt aaaaaaaaac cagcctgttt ccagactggc
     3721 ttttgtgctt ttcaagccgg tgttacatcg cttttttggt caactcgata acgcgcagct
     3781 gcgcgatcgc tttggccagt tccgcagacg cctgagcgta atctacgtcg ccgtgagagc
     3841 tgctaatgtg ctcttcagcc ttacgtttcg cttccatggc tcgcgcttcg tcgagatcct
     3901 ggccgcgaat tgcggtgtcg gccagaacgg tcacgttgcc agactgcact tcaagaatgc
     3961 cgccagacag atagataaac tcttcgtgac cgtgctgttt cacgatgcga atcataccag
     4021 gcttaatggc ggtgagcagc ggtgcgtggc cagggtagat ccccagttca ccttcgctac
     4081 ccgttacctg gattttctcg accagaccag agaacatttg ttgctctgcg ctgacgacgt
     4141 ccaggtggta agtcattgcc atatcaccct ccgattaagg cgttaaagtt ttttggcttt
     4201 ttccacagct tcttcgatgg aaccgaccat gtagaacgcc tgctccggca ggtgatcgta
     4261 ttcgccttcc atgatgcctt taaagccacg gatggtgtct ttcagggaga cgtatttacc
     4321 cggagaaccg gtgaatactt ctgccacgaa gaacggctgg gacaggaagc gctggatctt
     4381 acgagcacgc gctaccacca gtttgtcttc ttcagacagt tcatccatac ccaggatggc
     4441 gatgatgtct ttcagttcct gataacgttg caggatggac tgaacgccac gcgcggtgtc
     4501 gtagtgttcc tgaccaacca ccagcgggtc cagctgacgg ctggtggagt ccagcgggtc
     4561 aacggccggg tagataccca gagacgcgat ctgacggctc agtaccacgg ttgcgtcaag
     4621 gtgcgcaaag gtggttgccg gagacgggtc agtcaagtca tccgcaggta cgtataccgc
     4681 ctgtacggag gtgatagaac cagttttggt ggaggtgata cgttcctgca gaacgcccat
     4741 ctcttccgcc agggtcggct gataacctac cgctgaaggc atacggccca gcagtgcgga
     4801 tacttccgta ccggccaggg tgtaacgata gatgttgtca acgaacagca gaacgtcacg
     4861 accttcgtca cggaatttct cagccatggt cagaccggtc agagcaacgc gcagacggtt
     4921 tcccggcggc tcgttcatct ggccatacac cagggatact ttgtcgataa cgttggagtc
     4981 ggtcatttcg tggtagaagt cgttaccctc acgagtacgt tcacctacgc ccgcaaacac
     5041 agagtaaccg gagtgctcga tcgcgatgtt acgaatgagc tccatcatgt ttacggtttt
     5101 acctacaccc gcaccaccga acagaccaac tttaccgccc ttagcgaacg gacacatcag
     5161 gtcgataact ttgataccgg tttccagcag ttcctgagag tttgacagct cttcgtagga
     5221 aggtgctgcg cggtgaatcg cccaacgctc ttcttcaccg atctcgcctt tcatgtcgac
     5281 cggttcaccc agtacgttca tgatacggcc cagagtcgct ttacctaccg ggacttcgat
     5341 cgggtgttcg aggtctttta catccagacc gcgacgcaga ccgtcggagg aacccattgc
     5401 gatggtacgc acgataccgc cgccgagctg ctgctgaact tccagcacca gacgctcatt
     5461 accattttgc acctcaagag catcgtacac gcgcggtacg gcatcctgag ggaattcgac
     5521 gtcaactacg gcgccgatta cctggacaat ctttccagta gccatcttaa atcctctacg
     5581 aaataacctg tttaaaccgc ggcggccccc gagacgatct cggtgagttc ctgagtaatg
     5641 ctggcctgac gagctttgtt gtataccaac tgcagctctt taatcaggct gccgccattg
     5701 tcggtcgcgg ctttcatcgc caccatacgg gcggcctgct cgctggccag gttttcaacc
     5761 acgccctgat aaacctgaga ttcgacataa cgacgcagca gggtatccag caacgccttc
     5821 ggatcgggtt cgtacaggta atcccaggat ttatgtttca gatcatcatc atctgatgcc
     5881 ggtaacggca gcagctggct gatggtcgga acctgagaca tggtgttaat aaatttgttg
     5941 ctgacaatgt aaagcttgtc cagacggcct tcgtcgtagg cctgcaacat cacttttacc
     6001 ggaccgatca gttcggacag ggaagggtta tcccccatgc cggtgacctg ggcaacaaca
     6061 ttgccgccca cggagttgaa gaacgacacg cctttcgagc cgatcattgc gaggtcgcat
     6121 tgaacgcctt tgtcggtcca ggtcttcatt tccgccagca gttttttgaa caggttaatg
     6181 ttcaaaccac cgcacaaacc acggtcggtc gacaccacca ggtagcccac gcgtttaacg
     6241 tcgcggtctt ccaggtaaag gtgcttatat tccagattac catgtgcaag gtgaccaatc
     6301 actttgcgca tggtttctgc ataaggacgg ctggccgcca tgcgatcctg cgatttacgc
     6361 attttggaag cggcgaccat ctccatcgct ttagtgatct tttgcgtgtt ctggacgctt
     6421 gcgatcttac tacgtatctc ttttgcgccg gccatgagct tctcctcaat gccttgcggc
     6481 ctgccctaag gcaagccgcc agacgttacc aggattgggt tgctttgaag gaatcgagga
     6541 tgcctttcag tttgccttcg atttcgtcgt tgtagccacc ggtctggttg atctcttgca
     6601 tcaacggagc gtgatcacgg tcgacgtaag ccagcagagc ggcttcgaag ctgccaattt
     6661 tcgacagttc aacatccgcc aggtaaccac gttctgctgc gaacagaacc agagactgct
     6721 gcgcaacgga catcggcgca tactgtttct gtttcagcag ttcggtcact ttctgaccgt
     6781 ggtcaagctg cttacgtgtt gcatcgtcaa ggtcggatgc aaactgagag aacgctgcca
     6841 gttcacgata ctgtgccaga gcggtacgga taccaccgga cagttttttc atgatcttgg
     6901 tctgtgctgc accaccaaca cgggatacgg aaatacccgg gttaaccgca ggacgaatac
     6961 cggcgttgaa caggttggtt tccaggaaga tctgaccatc ggtaatggag attacgttgg
     7021 tcggaacgaa cgcagaaacg tcacccgcct gagtttcgat aatcggcagt gcggtcagag
     7081 aaccggtttt ccctttcact tcacctttgg tgaaggcttc aacgtattcg gcgttaacac
     7141 gtgcagcacg ctccagcaga cgagagtgga ggtagaaaac gtcgcccggg aatgcttcac
     7201 gtcctggcgg acgacggagc agcagggaga tctgacggta agcaacagcc tgtttagaca
     7261 ggtcatcgta aatgatcagc gcatcttcac cgcggtcacg gaagtattcg cccattgcgc
     7321 aaccggcata cggtgccagg tattgcagtg cagcggattc agacgcggtt gctaccacaa
     7381 cgatggtgtt agccagtgcg ccgtgctctt ccagtttacg taccacgtta gaaatggtgg
     7441 acgctttctg gccgatagcg acatagatac atttgatacc ggaatcgcgc tggttgatga
     7501 tggcatcgat agccagtgcg gttttacctg tctgacggtc accgatgatc aattcacgct
     7561 gaccacgacc gattgggatc atggagtcaa cggctttata accggtctgt accggctgat
     7621 ctacggactg acgttcgata acgcccggag cgattgcttc tacagcagag aagccgtcgt
     7681 gatccagcgg acctttaccg tcgattggtg cacccagagt gttaaccaca cggcccagca
     7741 ggccacggcc aaccggaact tccaggatac ggccagtaca cttaactttc atgccttcgg
     7801 caaggtcagc gtacggaccc ataacaaccg cacctacaga gtcgcgctcg aggttcagtg
     7861 cgatagcgta acggttaccc ggcagggaga tcatttcacc ctgcatacaa tcggccaggc
     7921 cgtgaatgcg gataacaccg tcacttacag aaacaatagt accttcgttg tgagcttcac
     7981 tcacaacatt gaactgagca atgcgctgct tgatcagttc gctgatttcg gtggaattca
     8041 gttgcatgct ccagtcccct taagactgca agacgtctgc aaggcgctca agacgaccgc
     8101 gtacgctgcc atcaatgacc atatcacccg ctcggatgat aacgcctgcc attacagact
     8161 tatcgatttt gcaattcagc ttaactttgc gtgacagacg tttttccatc gcagcagaaa
     8221 ttttcgcgag ctgttgttca ctcagtgcgg cagcggaaat gacgtctacc tcagcggtag
     8281 cctcactcac ggcacgaagg tgaataaact gctccagaac atccgggagc gcgttaagac
     8341 gaccattttc agccattacc cgaatcaggt tctgaccgtt ttcgtccagt tgctcaccac
     8401 aaactgcgat aaacgactcg gcgagcgttt ctggcgcaag cgcgccagag agaagctctg
     8461 ccatttgttc gtttttggtt acctcggcgg caaacgccag catgtcctgc cagcgttcta
     8521 cactttggtg ttcgacggca aagtcaaaag ctgctttggc gtaggggcga gctaccgtaa
     8581 taaattcaga catcagcccc tccctcctta cagttcagcg acaagtttat ccacgatgtc
     8641 gctgttagca gcttcatcca cggaacgttc gatgatcttc tcggcgccag caacagccag
     8701 gatagcaact tgcttacgca gctcttcacg ggcacgttta cgctcggctt caatttctgc
     8761 ctgcgcctgg gccacgattt tagtacgttc ctgttctgcc tcagctttcg cttcgtccag
     8821 aatctgcgag cggcgtttgt tcgcctgctc gatgattacc tgggcttccg ctttcgcttt
     8881 tttcagctgg tcggtcgcgc tggcctttgc aaggtcaagg tccttatgtg ctcgttctgc
     8941 ggaagcaagg ccgtcagcaa tttctttttg acgtttttcg atggctgcca ttaatggcgg
     9001 ccatacgtac ttcatgcaga acagaacgaa caggacaaac gcgatggcct ggccgaggat
     9061 tgttgcgtta agattcacag cacaatgcct ctatttagtt aacgttctga tattgctctt
     9121 taaataaaag caacgcttac tacgcgacag cgaacatcac gtacagaccc agacctacag
     9181 cgatcatcgg gatagcatcc accagaccca taacgataaa gaactgagta cgcagcagag
     9241 gaatcagatc aggttgacgc gctgcgcctt ccaagaattt acccccgagg atgccgatac
     9301 cgatcgcagc accgattgcc gccagaccca tcatcacagc ggcagccatg tacagcagat
     9361 ccatattcag gttttccatg acagtctcca gtttgtttca gttaaaacgt agtagtgttg
     9421 gtaaattaat gttcttcaga cgccatcgac agatagacga tcgtcagaac catgaagatg
     9481 aaggcttgca gcgtaatgat caggatgtgg aaaatggccc acggcacatt caggatccac
     9541 tgtgaccacc acggcaacag accagcaatc agaatgaaaa tcagctcacc ggcatacatg
     9601 ttaccgaaca gtcgcaaacc gagtgaaact ggtttggaca gcaggcttac cccttcaagg
     9661 attaagttga caggaatgaa cgcccagtga ttgaacggct gcagcgtcaa ctctttcgtg
     9721 aagccgccga tgcctttcat tttgatgctg tagaacagaa tcaggataaa tacgcccaat
     9781 gccatagaca gcgttacgtt cacgtccgca gacggaacca cacgcagtgc aggcagaccc
     9841 agtacatgtt cagcaatgta cggcagcagg tcgataggca gtaaatccat caggttcatc
     9901 aggaataccc agacgaagat cgtcagggcc agcggagcaa tcagcttgct tttgccatgg
     9961 tacatgtctt tcacgctacc attaacaaag ccgatcacca gctcaatcgc ggtctgaaac
    10021 ttacctggca caccgctggt cgcctttttg gctacgctac ggaataaaac caggaacaac
    10081 agacccagca ccaccgagaa gaacatggag tcaatattga ttgtccagaa ggtggctggg
    10141 gggttttgtg gatccaccag cgagaatgta cgcaggtcca gctgaaggtt attcaggtgg
    10201 tgtcctatgt aatcctgcgg cgtcatattt tctgaagcca tgatgccttt taccctttgt
    10261 tgttaattac agccggtgcc agtatctgaa ccaccagcac caaaacccac gtaacgatca
    10321 gcggcaagaa taccgccttt aaaaccgcca acgccaccac cagtaacacc aacatcgcca
    10381 gaactttgaa agcttcgcca aatgcgaatg tccaggccac ccggcctttc gctggtgtat
    10441 gcgcctggtg acgccaagca aatatcataa acaaaacgtt aggcagaaag actgccaggc
    10501 ccccgcttat tgcagagacg ccccagaagg ggtctttgag gctgaacagc aatccacttg
    10561 ctatcaccac cagtaactga acgagcagaa gcttccgagc aacgtttcga ctcacgagcg
    10621 acacagacat cacgtttttt actcctgctc ccttcgaggt atgccgcgtg tcgtataaaa
    10681 ctttctttaa ggcttagagt caagcatcaa aaagcggtca aattatacgg cgcgcccccg
    10741 tgatttcaaa caataagtag ccaaaaggtg aataaatgtt taaatatttt tccagtgcat
    10801 acaattgcga cttttctact aaccctgttc gatcatgaaa aactgtaaat aacgcgtaaa
    10861 cactggtgat aaagcgtgct tcagatcaca tattgcgcat gttcgcgcac agcatattta
    10921 tttacttggc aaatgatgcc tttgcaagtt tatgatattt cagtctaaaa acagatactg
    10981 ttttaataaa tgacatttac acaacaaaaa ccacccattg acatttttaa taatgtttta
    11041 gcagccaatg atggttctta gcgccgattt ttagcagact gatattttca ctaatgactt
    11101 attttctgct taccaaaaaa agccacgtta tcttgttgat gcaaaagagt gaacgtggcg
    11161 ttaaatgtaa ccagttatat cagtagaaaa cctggttgtt gttaacagtc taaccggtca
    11221 attttttatg atttttttga taaaaattaa attttatttg ctttaatcac caccagatga
    11281 cgttcgccat ccagggctgg aacctgaagt ttaaccactg attcgacctg atattcttcg
    11341 ggcaacaaag cgatttcatc ttccggcatt tgccctttca gcgcgtagaa acggccttgc
    11401 tcaccaggaa gatggtggca ccagctcacc atatcgttca gagaggcaaa agcgcggcta
    11461 attacgccat caaatggcgg ctctgaagga aactcttcta ccctgctctg tacaggttca
    11521 atattctcca gtttaagctc atgttgcacc tgacgaagga aacgcacgcg tttaccaagg
    11581 ctatccaaca gagtgaaatg ggcttcagga cgcacgatag agagtggaat gcctggcagt
    11641 cctggtccgg tgccgacatc gataaaccgt tcaccttgca gatacggtgc caccacaatg
    11701 ctatcgagaa tatggcgtac cagcatctca ttaggatcgc ggaccgaagt caggttgtac
    11761 gctttgttcc atttatgcag catattcacg taggcaataa gctggttttt ctggtgatcg
    11821 gtaagcgaaa tacctgcgtc tttcagcagt aaggagagtt tgttgagcac ggtgattacc
    11881 tgttcttgat gcgttgcctg gtaagcgggt gcttaccagg catttttaat gcgttatgcg
    11941 ctacgacgca gcataccctg ttttttcagc cacaccagca gaatggagat agccgcaggc
    12001 gtgacgccag aaatacgcga agcttggccg atagaggctg gtttgtgatc gttaagtttg
    12061 gcgatcactt cgttagaaag accggatacc tggcggtaat ccagtgtcgc gggtagcagg
    12121 gtgttctcgt tacgcagctg cttttcgatc tcatcttgct ggcgcgcgat ataaccttcg
    12181 tatttaacct gaatctcaac ctgttccgcc gcctgttcgt ctgtcaacgc aggggcaaac
    12241 ggcgtcagcg tggttaattt ttcataagtc atttccggac gacgcagcag atcttcacca
    12301 ctggcttcac gggaaagcgg cgcagtcagg tgagcattca cttcggctgc agcttccgcc
    12361 gacggggtta cccaggtcga tttcagacgc tgacgctcac gctcgatatt ctcaagtttc
    12421 tcgttaaagc gcgcccaacg ttcgtcatcc accaggccca gttcacgacc gatttcagtc
    12481 aaacgcagat ccgcattatc ttcgcgtagc atcagacgat attctgcgcg cgaagtaaac
    12541 atacgatacg gttctttggt tcctaaagtg cacaggtcat caactagtac gccgagatac
    12601 gcctgagaac gtgccggagc ccaaccttct ttgtcagcag acagacgggc agcgttaaga
    12661 ccggccagca aaccttgcgc agcggcttct tcgtaaccgg tagtgccgtt aatctgacca
    12721 gcaaagaaca gcccctggat aaacttgctc tccagcgtcg gtttcaggtc gcgaggatcg
    12781 aagaagtcat actcaatggc ataacccgga cgcacgatct tcgcgttttc catcccctgc
    12841 atagagcgga cgatttgcat ctgcacatcg aacggcaggc tggtggagat accgttcgga
    12901 taaatttcat tagaggtcag tccttccggt tcaaggaaga tctgatgctg atttctgtcg
    12961 gcgaagcgca tgactttgtc ttcgatcgac gggcagtagc gtgggccgac accttcgatc
    13021 acccctgcat acattgggct acgatcgagg ttactgcgga tcacatcatg ggttttctcg
    13081 ttggtatgag tgatataaca cggcacctgc tggggatgct gggacgcatt gcccataaac
    13141 gagaataccg gcattgggtt atcgccatgc tgttgcgcca gcacactaaa gtcgatagtt
    13201 cgagcatcaa tacgcggtgg tgtcccggtt ttcagacgac caacgcgcag cggcagttca
    13261 cgcaaacggc gagaaagcgg aatggacggc ggatcaccag cacggccacc gctgtaatta
    13321 tccagaccga tatgaatttt accgtcgagg aacgtcccaa cggtgagcac gacggctttg
    13381 gcacggaact tcagtcccat ttgggtaaca gcaccgacca cgcgatcgtt ttcgacaata
    13441 agatcttcaa ccgcctgctg gaagatcatc aggttcggtt ggttctccag cgccgtacgt
    13501 accgcctgac ggtagagcac acgatccgcc tgagctcggg tagcgcgaac cgccggtcct
    13561 ttgcttgcgt ttagtatcct aaactggata cccgcttgat cgatcgcttt cgccatcaga
    13621 ccgccgagtg catccacttc ttttaccaga tgtcccttcc caataccgcc gatcgccggg
    13681 ttgcagctca tctgccccag agtgtcgata ttgtgtgtca aaagcagagt ctgttgaccc
    13741 atacgcgccg cggccatcgc ggcctcggtg cctgcatgac ccccgccaat gatgatgacg
    13801 tcaaaaggat ccggataaaa catggtgatt gcctcgcata acgcggtatg aaaatggatt
    13861 gaagcccggg ccgtggattc tactcaactt tgtcggcttg agaaagacct gggatcctgg
    13921 gtattaaaaa ggagatctat ttatttagag atctgttcta ttgtgatctc ttattaggat
    13981 cgcactgccc tgtggataac aaggatccgg cttttaagat caacaacctg gaaaggatca
    14041 ttaactgtga atgatcggtg atcctggacc gtataagctg ggatcagaat gaggggttat
    14101 acacaactca aaaactgaac aaccgttgtt ccttggataa ctaccggttg aaccaagctt
    14161 cctgacagag ttatccacag tagaacgcac gatctgtata cttatttgag taaattaatc
    14221 cacgatccca gccattcttc tgccggatct tccggaatgt cgtgatcaag aatgttgatc
    14281 ttcagtgttt cgcctgtctg ttttgcaccg gaatttttga gttctgcctc gagtttatcg
    14341 atagccccac aaaaggtgtc atattcacga ctaccaatac cgattgcgcc aaagtggacc
    14401 gcagaaagat cgggcttctg ttcctgcaat gcttcataga aaggagaaag gttgtccgga
    14461 atatctccgg caccgtgggt ggagctgata atcagccaga tccccgaggc agataaatct
    14521 tccaacagcg gaccgtgcag cgtttcggtg gtaaaacccg cctcttccag cttttcagcc
    14581 aggtgttctg ctacatattc ggcaccgccg agggtgctgc cgctgataag agtgatatct
    14641 gccataaacc gccaccttta ttaagagtgg cgtattgtac gctgtgaacg cgttgggatc
    14701 tacctgtgga aaagtatggg attaaaaaag ccgatcaggg cttgatagta cgcatgatcg
    14761 ggtgttgcag gacgatcaat gtctcggtgg actgaatttc atcaattgtt tggatcttgt
    14821 tgataagtac atgctggaga gcgtcgatcg aacggcacat tacttttata aagatgctgt
    14881 agtggcctgt tgtgtaatag gcttcagtga cttcatcaag gctttccagc tttgccagcg
    14941 cggaagggta gtctttggcg ctctttaata taatgccgat aaagcagcct acgtcataac
    15001 cgagctgctt cgggctgaca tcaatacgcg ccccggtaat gatccccgcc tgcttcattt
    15061 tctctacccg aacgtgaatc gtccccggac tgacgccaaa ttgtttcgcc agttcggcgt
    15121 aagcggtgcg cgcattgccc attaatgctt ccaggatgcc acggtccaga ttgtcgatca
    15181 gataattttc cataggattt tcttatgcag attgatgatt cattctattt tagccttctt
    15241 ttttaatgaa tcaaaagtgt gttaggcttt ttattgaatg attattgcat gtgtgtcggt
    15301 ttttgttgct taatcataag caacaggacg caggagtata aaaaatgaaa accgcttaca
    15361 ttgccaaaca acgccaaatt agcttcgtga aatctcactt ttctcgtcaa ctggaagaac
    15421 gtctggggct gatcgaagtc caggcaccga ttcttagccg tgtgggggat ggcacgcagg
    15481 ataacttgtc gggctgtgaa aaagcggtgc aggtaaaagt gaaagctctg cctgatgccc
    15541 agttcgaagt ggttcattca ctggcgaagt ggaaacgtca gaccttaggg caacacgact
    15601 tcagcgcggg cgaagggctg tacacgcaca tgaaagccct tcgccccgat gaagaccgtc
    15661 tttctccgtt gcactcggtc tatgtagacc agtgggactg ggaacgcgta atgggcgacg
    15721 gtgagcgtca attctcgact ctgaaaagca cggtagaggc gatctgggcg ggaattaaag
    15781 caaccgaagc tgcggttagc gaagagtttg gcctggcacc gttcctgccg gatcagatcc
    15841 acttcgtaca cagccaggag ttactgtctc gttatctgga tctcgatgcc aaagggcgtg
    15901 agcgggcgat agcgaaagat cttggcgcgg tattccttgt cgggattggc ggcaagctga
    15961 gcgatggtca tcgccacgac gtgcgcgcac cggattatga tgactggagc accccgtcag
    16021 agctgggtca tgcgggtctg aacggcgata ttctggtgtg gaaccctgta ctggaagatg
    16081 cgtttgagct ttcttccatg gggatccgcg tggatgccga cacgctgaag catcagctgg
    16141 cgctgaccgg tgatgaagat cgtctgcagc tggaatggca tcaggcgctg ctgcgcggtg
    16201 aaatgccgca gaccatcggc ggcggtatcg gccagtctcg tttgactatg ctgctgctgc
    16261 aactgccgca tatcggccag gttcagtgtg gagtatggcc agctgctgtt cgcgagagcg
    16321 tcccttctct gctgtaataa tttatcgccg ccagcgtctg agcaggcggc ttcgcatccc
    16381 ggtatcaaag cgccagatat gatcgaaaat gcgcatgatg ccgggtttgc cgtgtgccga
    16441 catcgccacg gcatgaaagc gatgctgatg tacccgctgc agctctttca ctttactcgt
    16501 cacgtcgtca ggcaaccgct gagcgataaa atcagaaatc accaccgcat cggcatcaaa
    16561 ccattccctg ctttgcaagc gttccataat ggcgcgaaaa caactggcaa gatcggtgcc
    16621 gccacgaaac tgctggctta aaaaacggat tgcttgttcg atgccttgtg ggcctgaaag
    16681 ctcataacgg acgatctcgg tggaagatag cataatatag cagcgccggt tttctgcgag
    16741 agcaatgcgc atcaaggcca ggcagaacgc tttcgcacac tgttcattaa agccgcccat
    16801 tgagccggaa gtatccacac agacaataaa cggcccgcgc ggctgttcat cgtaatcttt
    16861 atgtaccacc ggacgttcga tcactttttc acgccacgac tcaccgtgca ggcgataggt
    16921 gagcaactgt ttttccacca gccgacggta aaactcatac tccagttccg ttatccctag
    16981 tgtcgccagt tctggcggca ggagacgtaa aatatcatcg ctttgttgca gaccatcaac
    17041 ctgctcagga accgtcgccg gttcgcgcac catggtgcgg aaggtttcca tctgcgcatc
    17101 gttgcgcggt attgatttgg cttcccgaga acgccccagc tgctctgcca ggcgtttcag
    17161 ttccggctgt tcgttaagaa attcaccgta tttcacaatc aactgatagt cgccacgttt
    17221 aagctggccg gcgctcatat cccacagacg accagctgcg gtattgttat ctgcgagaat
    17281 cggttcaagt tgtccgctca gcgtcatgcg ttcctgaact tcacttaaca gttgttcgcg
    17341 ttcttcttct aatagctgtt gatttaacgt cgttgcttgc acgatcagac ttaaacgcca
    17401 gcgctggaga aaaagcgtgt gtaacgctga agttattgtg ctgttagcat caaccaactg
    17461 ccgggcttgt tctgcccatg gggaattcag acgatgcagt aagtccagga tctgtggtag
    17521 ctgcacaata aactgcggcg tggagaggag ctggctttgc tgatagcaca tcacctcttc
    17581 ggtgagttct ggcgggactc gggcatcttt cagccgactg cgcagcgcct cacgccagcg
    17641 gggaacatca tcagtgattg ctgccttcag tcgtgggaat ttttcaaaga agaccgccag
    17701 ctgcggtgag gccagcagtg cgatgatcat ctcttcgatc aatccctctt cgctgacggc
    17761 cagcatcaca ttaagcgtat cctgcgttag cattgttgtg cctggcgaat ctgtgcaccg
    17821 acatcctgta ggctggcttc aatgcgacct aaccagtcgc cagggataaa cagacatttt
    17881 tgctgttcgc tgaataaagc gtgttgctta cgccagtcgc tttcaagctc ttccagttgt
    17941 tgttttattt cacctggcag accttcagcc gatgaaccgg gaagtgccag cgtactgcct
    18001 tgtaaactta catcgcgtac aacaagatgt tgggtgctat caacttccag attcagtttc
    18061 tgggcaaagc cgataccgtt cagtttgccg cgaatttcac cacctttact cagccactgt
    18121 tccagcgcgc tacgctcaaa ggagatatga accacttcca tatcatgcag ttttaacggt
    18181 ttttgcagca gcagagtcag agtggaagca gtaacgttaa cagggagttg atactgctga
    18241 cgacggctaa aaatgccgcc cagacgaatt accgttaagg ctgttttatc gctttgttgc
    18301 tgctgaagtt gcaggtgacg ttgcacaatc gcgcctaggc gggtcaacat cccttgctgt
    18361 tgccaggcgt gaccggtcat caatacatca atttgttgtt gtatcaaatt caggctttgc
    18421 gcgtcatacc acaggcaatc tttcagcaaa atgagatcta ccggggcaac agcactgcga
    18481 ccgctaaaaa aggcgctggc ctgcaataat cggatcgctt ttttccagcg acgatccgag
    18541 acataaggcg catccggtaa tttatccagt tgctggcgca gcataaaaat cagctcaaat
    18601 acatgatcgg gcagcgtaat ttcaccaatc tctttctgcc agcgttcata ttcttcatct
    18661 gtgacctgca aggcatcagg aaccggattg tcgttttcat cctgttgact ggtcagcatg
    18721 gagcggaaat tcgctttatc ctgcacttta tctaaccaca gacgaatcag catgcggtca
    18781 tataacgctt ccagactgct gtctgcttcc ggcagctcgt tggaggccgc caccagcaga
    18841 cgcatcggga ttttttctac gtgtgcaccg ttgcggaact ggcgctcgtt aatggcggtg
    18901 agcaaggtat taagaattgc cgggcccgct ttccagatct catccagaaa gacaatttct
    18961 gcttccggca ggtaaccgct ggttaaacgt tcatagcgcc cttcatcttt tagcgcctga
    19021 atagaaaggg gaccaaaaac ttcttccggc gtggagaagc gggtcatcag atattcaaac
    19081 gcgcgggcat tctgaaaggc gaattttaag cgccgggcga tcaaactttt ggcaatacct
    19141 ggcgggccaa ggaggaacac actttcacca cttaatgccg ctaataaaca caagcggatg
    19201 gcgtggctac gttcataaag ccccttttcc aacgaactgc tcaggcggga aattctttcc
    19261 gctaataaat gagggtgagc cataatgaag tggcgtcctt tcgtcaaaag ttctgcgtaa
    19321 attgcgagta tagacgtttc ttgctggtgg ctaaaatagt ctcaaag
//
LOCUS       DAJVUP010000075        19140 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.075, whole genome shotgun sequence.
ACCESSION   DAJVUP010000075 DAJVUP010000000
VERSION     DAJVUP010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19140
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.075"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..899)
                     /locus_tag="OQQ75_002350"
     CDS             complement(<1..899)
                     /locus_tag="OQQ75_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS1976653.1"
                     /translation="MTNFTTSTPHDALFKSFLTHPDTARDFMEIHLPKDLRELCDLDS
                     LKLESASFVDEKLRALHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAV
                     MQRHIEHDKRRPLPLVIPMLFYHGSRSPYPWSLCWLDEFAAPTTARKLYSAAFPLVDV
                     TVVPDDEIVQHRRVALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYIL
                     LTGDEARFKAFISELTRRMPHHRERIMTIAERIHNDGWLLGRERGRKEGKVEGERSLL
                     RLLLQNGADPEWIQRYTGLSAEQ"
     gene            1366..2598
                     /gene="mdtM"
                     /locus_tag="OQQ75_002351"
     CDS             1366..2598
                     /gene="mdtM"
                     /locus_tag="OQQ75_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtM"
                     /protein_id="HCS1976654.1"
                     /translation="MPRFFARHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFN
                     ADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMT
                     QFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAAL
                     MHFVHWKVLFAIIAVMGFISFVGLLLAMPETVKRGAVPFSAKSVFRDFRNVFCNRLFL
                     FGAATISLSYIPMMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANAIVARFVK
                     DPTEPRFIWRAVPIQLVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFT
                     LFSNNLPKGTVSASLNMVILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLA
                     GLLNRVRQHQAAELAEER"
     gene            2639..3919
                     /locus_tag="OQQ75_002352"
     CDS             2639..3919
                     /locus_tag="OQQ75_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HCS1976655.1"
                     /translation="MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIA
                     EAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL
                     VALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAI
                     DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEH
                     PLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDP
                     EMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSEDSRVKERIARAGQWFGE
                     TLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKD
                     LQFIRVNGTLVGGCIGLILYLLSQLPALFPLSNF"
     gene            4035..5187
                     /locus_tag="OQQ75_002353"
                     /pseudo
     CDS             4035..5187
                     /locus_tag="OQQ75_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418755.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase subunit D"
     gene            5197..5965
                     /locus_tag="OQQ75_002354"
                     /pseudo
     CDS             5197..5965
                     /locus_tag="OQQ75_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5962..6219
                     /locus_tag="OQQ75_002355"
     CDS             5962..6219
                     /locus_tag="OQQ75_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3343 domain-containing protein"
                     /protein_id="HCS1976656.1"
                     /translation="MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLC
                     IWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYRVSPR"
     gene            6173..7144
                     /locus_tag="OQQ75_002356"
     CDS             6173..7144
                     /locus_tag="OQQ75_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HCS1976657.1"
                     /translation="MVSGAALHITGFLRVKDSLRSLRILLDILLICLKGITVTKSISL
                     SKRISVIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTW
                     SAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYA
                     IYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN
                     GLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG
                     EISLTKGSRGLSHNIKQAEGIAMDASGNIYIVSEPNRFYRFTPKSSH"
     gene            7212..8384
                     /locus_tag="OQQ75_002357"
     CDS             7212..8384
                     /locus_tag="OQQ75_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1976658.1"
                     /translation="MPSSSHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVIMAE
                     GAFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLVSALARGLLILAMAWL
                     PPFILVLLIRFLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIALGNEYVLAGL
                     HFAFSSQTLWQGAGALSGMMLIALTLLMPSKKHAIAPMPLAKTEQQIMSWWLLAILYG
                     LAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLT
                     ANLLVQAISVLLTLASDSPLLLIISSIGFGGTFMGTTSLVMTIARQLSVPGNLNLLGF
                     VTLIYGIGQILGPALTSMLGNGTSALAGATLCGAAALFIAALISTVQLFKLQVVTS"
     gene            complement(8397..8952)
                     /gene="kptA"
                     /locus_tag="OQQ75_002358"
                     /pseudo
     CDS             complement(8397..8952)
                     /gene="kptA"
                     /locus_tag="OQQ75_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151849.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2'-phosphotransferase"
     gene            9202..9884
                     /locus_tag="OQQ75_002359"
                     /pseudo
     CDS             9202..9884
                     /locus_tag="OQQ75_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418750.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9881..10342
                     /locus_tag="OQQ75_002360"
     CDS             9881..10342
                     /locus_tag="OQQ75_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiG family protein"
                     /protein_id="HCS1976659.1"
                     /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI
                     TGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTV
                     LLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV"
     gene            10355..11527
                     /gene="iadA"
                     /locus_tag="OQQ75_002361"
     CDS             10355..11527
                     /gene="iadA"
                     /locus_tag="OQQ75_002361"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1976660.1"
                     /translation="MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPS
                     DIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG
                     LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
                     VKCAISDHRSAAPDVYHLANMAAESRVGGLLGSKPGVTVFHMGDSKKALQPIYDLLEN
                     CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIP
                     LARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTS
                     SVAGFLNLSGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA"
     gene            11592..12503
                     /gene="hypT"
                     /locus_tag="OQQ75_002362"
                     /gene_synonym="qseD"
     CDS             11592..12503
                     /gene="hypT"
                     /locus_tag="OQQ75_002362"
                     /gene_synonym="qseD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypochlorite stress DNA-binding transcriptional
                     regulator HypT"
                     /protein_id="HCS1976661.1"
                     /translation="MDDCCAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSR
                     RIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRK
                     IKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLL
                     EAPFDHIRLFESQLFPVCASDEYGEAIFNLAQPHFPLLNYSRNSYMGRLINRTLTRHS
                     ELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAY
                     AYRMNTRMNPVAERFWRELRELEIVLS"
     gene            complement(12496..12888)
                     /gene="iraD"
                     /locus_tag="OQQ75_002363"
     CDS             complement(12496..12888)
                     /gene="iraD"
                     /locus_tag="OQQ75_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313312.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraD"
                     /protein_id="HCS1976662.1"
                     /translation="MMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALPSLL
                     VSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIM
                     LYHDDEPLTFDLVWDNGGWRSATLENVS"
     gene            complement(12885..12968)
                     /gene="idlP"
                     /locus_tag="OQQ75_002364"
     CDS             complement(12885..12968)
                     /gene="idlP"
                     /locus_tag="OQQ75_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iraD leader peptide IdlP"
                     /protein_id="HCS1976663.1"
                     /translation="MENEHQYSGARCSGQAAYVAKRQECAK"
     gene            13560..14390
                     /locus_tag="OQQ75_002365"
     CDS             13560..14390
                     /locus_tag="OQQ75_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS1976664.1"
                     /translation="MSMPLSNALQSQIITDNHFLHHPKVDNKLTREYEYTRMDTENIY
                     LLPLTRGNNHNYDGKSVVEIRKLNIGKQSWPFNYATDTCREFNGITTTGRMLYRNLKI
                     TSALDEIYGGICKKAHAATELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGYNVPGYA
                     GTTIGYISTLPASQAKRWTNEQPRIDIYIDQIITVSGVANSSGFALAALLNANIGMGN
                     DPIIGIEAYPGTAEIHAKMGYNVIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK
                     "
     gene            complement(14531..15304)
                     /gene="uxuR"
                     /locus_tag="OQQ75_002366"
     CDS             complement(14531..15304)
                     /gene="uxuR"
                     /locus_tag="OQQ75_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxu operon transcriptional regulator"
                     /protein_id="HCS1976665.1"
                     /translation="MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLD
                     VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQAR
                     QLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATH
                     NSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKL
                     AMWQHLENVKQRLLEFSNVDDIYFDGYLFDSWPLDKVDA"
     gene            complement(15519..16979)
                     /locus_tag="OQQ75_002367"
                     /pseudo
     CDS             complement(15519..16979)
                     /locus_tag="OQQ75_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
     gene            complement(17060..18244)
                     /gene="uxuA"
                     /locus_tag="OQQ75_002368"
     CDS             complement(17060..18244)
                     /gene="uxuA"
                     /locus_tag="OQQ75_002368"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709912.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HCS1976666.1"
                     /translation="MEQTWRWYGPNDLVSLADVRQAGATGVVTALHHIPNGEVWSVEE
                     ILKRKAIVEDAGLVWSVVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCY
                     NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAE
                     RFATMSDEDKARLTRNIIAGLPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKA
                     IIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYG
                     VRADNDLVDMIKQFGPRIYFTHLRSTMREDNPKTFHEAAHLNGDVDMYEVVKAIVEEE
                     HRRKAEGKEDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF
                     SR"
     gene            18584..18788
                     /locus_tag="OQQ75_002369"
                     /pseudo
     CDS             18584..18788
                     /locus_tag="OQQ75_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646216.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(19031..>19140)
                     /locus_tag="OQQ75_002370"
     CDS             complement(19031..>19140)
                     /locus_tag="OQQ75_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1976667.1"
                     /translation="TSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ"
BASE COUNT         4473 a         4865 c         4805 g         4997 t
ORIGIN      
        1 atttgctctg ccgaaagtcc ggtatatcgt tgtatccatt caggatcggc cccattctgc
       61 aacaacaatc ggaggaggct ccgttcccct tctactttcc cttctttcct ccccctctcc
      121 cttcccaaca gccatccatc attatgaatt cgctctgcaa ttgtcattat tcgctccctg
      181 tggtgtggca ttcgcctggt aagttcgctg ataaacgcct taaaacgcgc ttcatcgcca
      241 gtcagtaaaa tgtaatttaa cagcgcagtt atctggctgt cattagcaca ctctgtaacc
      301 agtaatacta ccagttggtc aataagcccc atcaaatcgc gctggcgaat atgcttttgg
      361 atcaactcca acagggcgac tctgcgatgc tgcacaatct cgtcgtctgg cacgacagtg
      421 acatccacca gcgggaacgc tgcgctataa agtttccgtg cggtagtcgg ggcggcaaat
      481 tcgtccagcc agcacaggga ccaggggtaa ggactacggc taccgtgata aaacagcatc
      541 gggataacca gcggtagcgg ccggcgttta tcatgctcga tatggcgctg catcaccgcc
      601 atggaatatc gcatcaggcg aaatgccata tgaatatcct cgcggctctg atgttcaatc
      661 actacgtaaa tataaccatc accttcacgg gtctttaccg accacagaat atcggagtgt
      721 agcgcccgca atttttcatc gacaaagctg gcggattcca gttttaagct gtcgagatcg
      781 cacagttcac gtaaatcttt gggtaagtgg atctccataa aatcccgcgc ggtgtcaggg
      841 tgagtgagaa aggatttaaa taatgcgtca tgtggcgtgc tggtcgtgaa gtttgtcatg
      901 gcgatccgtc acctgtagat aagatggccc gactttagcg actaacaaaa ccattctcac
      961 ccggcaattt ctcgttcccc gaggtgcttt ccaggcgtct gcaaacgata catttttccg
     1021 gaaacaggct cgcgttttac atttcctgta cccggcagat attccccttt ccaccgcgct
     1081 cttttgatta accgcaaatt ttaattacac ttaaggtgta tattttctat gcaacccatc
     1141 aattaaagag gtgtaatgtg ctgatgacta tttgtaatcg ttatacattc tgacctggag
     1201 tcagaaggta tttctctgtc tgtgtgttca caggcagtgt ggttgattac atgaaattca
     1261 gtacatttgc agtctcgttg cccttctcgc ctgcctttcg tcattaccga cggtattgaa
     1321 tttcgttttc cccgttgggg ttctccgaac aaggagttgt ttgttatgcc acgttttttt
     1381 gcccgccatg ccgccacgct gtttttcccg atggcgttga ttttgtatga ctttgccgcg
     1441 tacctgtcga cggatctgat ccagccgggg atcattaatg tggtccgtga ttttaatgcc
     1501 gatgtcagtc tggccccggc agccgtcagt ctctatctcg cgggcggtat ggcgttacag
     1561 tggctgctgg ggccgctttc cgacaggatt ggccgcaggc cggtgctgat taccggggcg
     1621 ctaatattta cccttgcctg cgctgcgaca atgttcacaa cgtctatgac acagtttctt
     1681 atcgcgcgtg caattcaggg caccagtatc tgttttattg ccaccgttgg ttatgtcacg
     1741 gtgcaggagg cgttcggcca gacaaaaggg atcaagttga tggcgattat cacctccatc
     1801 gtactgattg cgccgattat tggcccgctt tccggcgcag ctctgatgca ctttgtgcac
     1861 tggaaagtcc tttttgccat cattgcagtt atgggtttta tctcatttgt tggcttactg
     1921 ctggcgatgc cagagacggt gaagcgcggc gcggttccat ttagcgccaa aagcgtcttt
     1981 cgcgattttc gtaatgtctt ttgcaatcgg ctgttcctct ttggcgcagc aaccatctct
     2041 ttaagctata tcccaatgat gagttgggtg gctgtctcgc cggtgatcct gatcgacgcg
     2101 ggcagcttaa caacttcgca gttcgcctgg acacaggttc cggtgttcgg cgcggtgatt
     2161 gtcgcgaatg ccatcgtggc gcgtttcgtt aaagatccga ccgaaccgcg ctttatctgg
     2221 cgtgctgtac ccattcaact ggtcggcctc gcgctgttga ttatcggcaa tctgctgtca
     2281 ccgcacgtct ggctgtggtc ggtgctgggc accagtttgt atgctttcgg gattggtttg
     2341 atcttcccga ccttattccg ctttacgctt ttttccaata acttaccgaa agggaccgtc
     2401 tccgcatcgc tgaatatggt gatcctgatg gtgatgtctg tctcggtcga aatcggccgc
     2461 tggctgtggt ttaacggcgg tcgcttgccg tttcatctgt tagccgtcgt ggcgggcgtt
     2521 atcgtcgttt tcaccctggc aggattgctt aatcgcgtgc gccaacatca ggctgccgag
     2581 ctggcggagg agcggtgatt tttgcgcgat cctgccgtca ggctctattc ttaacgttat
     2641 gaataaactc attgaactca gacgcgccaa aatgttggcg ctctctttac tgcttatcgc
     2701 cgctgctacc tttgtcgtta cgctgttttt gccgcccaat ttttgggtga gcggcgtgaa
     2761 ggcgattgct gaagcggcga tggtcggcgc gctggcggac tggtttgcgg tggtggcgct
     2821 gtttcgccgc gtgccgattc cgatcatttc tcgtcatacg gcgattatcc cgcgtaataa
     2881 agaccggatt ggcgaaaatc tcggtcagtt cgtgcaggaa aaatttctcg atacccagtc
     2941 gctggtggca ttgattcgac gtcacgaacc ggcgttgttg attggcaact ggtttagtca
     3001 gccggagaac gcccgccgcg ttggtcagca tctgttgcag atcatgagcg gttttcttga
     3061 actgaccgat gatgcgcgta ttcagcgcct gcttaagcgc gcggtccatc gggcgattga
     3121 taaggtcgat ctttccggaa ccagtgcgtt gatgctggag agtatgacca aaaacgatcg
     3181 tcatcaggtg ctgctcgata cgctgatcgc acagttgatc gcccttctcc agcgcgataa
     3241 atcgcgcaag tttattgccc agcaaattgt tcgctggctg gagagcgagc atccgctgaa
     3301 agccaaaatt ttgcctactg aatggctggg cgaacatagc gcggagttgg tttctgacgc
     3361 ggtgaattct ttgcttgatg atatcagccg cgatcgtgcg catcagatcc gtcatgcgtt
     3421 tgatcgcgcc acttttgccc tgatcgacaa gctgaaaaac gatccagaaa tggcagcgcg
     3481 agccgatgcc gtaaaaagtt atctgaaaga agatgaagct tttaaccgct atctcagtga
     3541 attgtggggg gatttacggg aatggctgaa agcggatatc aacagtgaag attctcgtgt
     3601 gaaagaacgt atcgcgcggg cgggtcaatg gtttggcgaa acgttaattg ccgatgatgc
     3661 cttgcgggca tcgttaaatg gtcacctgga acaagccgcg caccgcgtcg cgcctgagtt
     3721 ttccgcattc ctgacgcgcc acatcagcga tacagtaaaa agctgggatg ctcgggatat
     3781 gtcgcggcaa atcgagttaa atatcggcaa agatctgcag tttatccgtg tcaacggtac
     3841 gctggttggc ggttgtattg ggctaatttt atatttgttg tcgcagctcc cggccttgtt
     3901 ccccctcagc aatttttaga aatccatgaa aaactaagtg gctaaccgcg agagagatca
     3961 aataaaccac actaaaagaa tggtaataat gtggcctctt ttcattatct cccgtggtac
     4021 ggggaaggaa aatcatgtca cttatcaccg atctacccgc cattttcgat cagttctctg
     4081 aagctcgcca gaaaggcttt ctcaccgtca tggatctcaa ggagcgcggc attccgctgg
     4141 ttggcactta ctgcaccttt atgccgcaag agatcccgat ggcagccggt gcggttgtgg
     4201 tttcgctctg ttctacctct gatgaaacca ttgaagaagc ggagaaagat ctgccgcgca
     4261 acctctgccc gctgattaaa agcagctacg gcttcggcaa aaccgataaa tgcccctact
     4321 tctacttttc ggatctggtg gtcggtgaaa ccacctgcga cggcaaaaag aaaatgtatg
     4381 aatacatggc ggagtttaag cccgttcatg tgatgcagtt gccgaacagc gttaaggacg
     4441 atgcctcgcg tgcgttatgg aaagccgaga tgctgcgctt gcaaaaaacg gtagaagaac
     4501 gttttgggca cgagattagc gaagatgctc tgcgcgatgc cattgcgctg aaaaaccgcg
     4561 aacgtcgcgc actggccaat ttttatcatc ttgggcagtt aaatcctccg gcgcttagcg
     4621 gcagcgacat tctgaaagtg gtctacggcg caaccttccg gttcgataaa gaggcgttga
     4681 tcaatgaact ggatgcaatg accgcccgcg ttcgtcagca gtgggaagaa ggccagcgac
     4741 tggacccgcg tccacgcatt ttaatcaccg gctgcccgat tggcggcgca gcagaaaaag
     4801 tggtgcgggc gattgaagag aatggcggct gggttgtcgg ttatgaaaac tgcactgggg
     4861 cgaaagcgac cgagctaatg cgtggcggaa acgggcgatg tctacgacgc gctggcggat
     4921 aaatatctgg cgattggctg ctcctgtgtt tcgccgaacg atcagcgcct gcaaatgctc
     4981 agccagatgg tggaagaata tcaggtcgat ggcgtagttg atgtgatttt gcaggcgtgc
     5041 catacctacg cggtggaatc gctggcgatt aaacgtcatg tgcgtcagca gcacaacatt
     5101 ccttatatcg ctattgaaac agactactcc acctcagatg tcgggcagct cagtacccgt
     5161 gtcgcggcct ttattgagat gctgtaagga gtggcagtga catattcgat tggcattgat
     5221 tctggttcta ccgccaccaa agggatctta ctggcagacg gcgtgattac gcgccgtttc
     5281 ctcgttccaa caccctttcg tccggcaaca gcaattactg aagcctggga aactctgcgc
     5341 gaagggttag agacaacgcc gtttctgacg ctcaccggct atggacggca actggtggat
     5401 tttgccgata aacaagtgac ggaaatctcc tgtcacgggc tgggcgcacg gtttcttgcg
     5461 ccagcaacgc tgcgcggtaa tcgacatcgg tggtcaggac agcaaagtga ttcagcttga
     5521 tgatgacggt aacctgtgcg atttcctgat gaatgacaaa tgcgcggcgg gcaccgggcg
     5581 tttcctggaa gtgatctcgc gcacgcttgg caccagcgtc gagcaactcg acagcattac
     5641 cgaaaatgtc acgccgcatg ccatcacgag tatgtgcaca gtgtttgccg aatcagaagt
     5701 gatcagcctg cgctcagcgg gcgtcgcgcc agaagcgatt ctcgccggag tgattaacgc
     5761 gatggcgcgg aggagtgcca atttcattgc tcgtctctcc tgtgaagcgc cgattctgtt
     5821 tactggtggc gttagtcatt gccagacgtt tgcccggatg ctggaatctc acctgggaat
     5881 gccggtaaat acccatcctg atgcgcaatt tgctggcgca attggcgcgg cggtaattgg
     5941 tcaacgagtg aggacacgcc gatgaaagag tttttatttt tatttcactc cacagtcggc
     6001 gtcatacaaa ctcgcaaagc gttgcaggca gcgggcatga cttttcgcgt cagcgatatt
     6061 ccccgtgatt tacgcggcgg ctgcgggtta tgcatttggc tgacctgtcc ccccggcgaa
     6121 gaaatacaat gggtgatccc tgggctgact gagtcaattt attgccagca ggatggtgtc
     6181 tggcgctgca ttgcacatta ccgggtttct ccgcgttaag gattcattaa ggtcgctacg
     6241 tatacttctc gatatcttat tgatttgcct taaagggatt accgtgacaa aaagtatttc
     6301 gttaagtaaa cgcatctccg ttattgtgat tctttttgcc attgtggcag tgtgtacttt
     6361 cttcgtgcaa tcttgcgccc gtaaaagcaa tcatgcagca tcatttcaga attaccacgc
     6421 caccattgac ggcaaagaaa ttgcaggcat aacgaataat atctcttcgc tgacctggtc
     6481 ggcacaaagc aatactcttt ttagcactat caacaaacct gccgccattg ttgaaatgac
     6541 caccaatggt gattttatcc gcacaattcc tctggatttt gttaaggatc tcgagacgat
     6601 cgaatacatt ggcgataatc agtttgtcat tagcgatgag cgcgattacg ccatttatgt
     6661 gatttcactg accccaaact cggaagtaaa aatcctcaaa aaaataaaaa tcccgctgca
     6721 agactcccca accaattgcg gttttgaagg gttagcttat tctcgccagg atcacacttt
     6781 ctggtttttt aaagagaaaa atccgattga ggtctacaaa gttaacgggc tgttaagtag
     6841 caatgaatta cacatcagca aagacgaggc actacaacgg caatttactt tagatgatgt
     6901 gtccggcgca gaatttaacc agcaaaaaaa tacgcttctg gtgctgtctc atgaatctcg
     6961 cgcactccag gaagtaaccc tggttggcga ggttatcggt gaaatatcac taaccaaagg
     7021 tagtcgaggt ttgtcgcata acatcaaaca ggccgaaggg attgcgatgg atgcctctgg
     7081 taatatttat atcgttagcg aaccaaatcg tttttatcgc tttaccccta aatcatcgca
     7141 ttaacaggct ggcatatttc acctttttgt tattaacttg ttaacaacaa aaatgacata
     7201 caaggttaaa catgccttcg tcctcgcatc ccgtagaacg cttttctttc agcaccgcgc
     7261 ttttcgggat gctggttctg accctaggta tgggattagg tcgcttcctt tatacgccta
     7321 tgttgcccgt cattatggcg gaaggggcgt tttcatttag ccagctctcg tggattgcca
     7381 gcggcaacta tgcggggtat ctggctggca gtctgctatt ttcgtttggc gcatttcacc
     7441 agccgtcgcg cctacgccca tttctgttgg tttctgccct ggcgagaggg ttgttgatcc
     7501 tcgcaatggc atggttgccg ccatttattc tggtgttatt gattcgcttc ctggcgggtg
     7561 tcgccagcgc cggtatgctg atttttggtt cgacgctgat tatgcagcac acgcgccatc
     7621 cttttgtgct ggcagctttg ttttctggcg ttggcattgc actgggcaac gaatatgttc
     7681 tggcaggcct gcattttgcc ttctcctcgc aaacgttatg gcaaggcgcc ggggcgcttt
     7741 ctggcatgat gctgattgca cttacgcttt taatgccctc gaaaaaacac gccatcgcac
     7801 caatgccatt ggcaaaaacg gagcaacaga taatgagctg gtggttactg gctattctgt
     7861 acggccttgc gggatttggt tatatcatcg tcgcgactta cctgccgctc atggcgaaag
     7921 atgcaggctc accattgtta accgcccatc tctggacgtt agtcggctta tcaattgtgc
     7981 caggctgctt tggctggcta tgggcagcaa aacgttgggg ggctttgcct tgcctgacgg
     8041 cgaatttgct ggtgcaggct atcagtgtgc tgcttactct cgccagcgac tctcctctct
     8101 tgcttatcat tagtagtatc ggttttggcg gtacctttat gggcacgaca tctctggtga
     8161 tgactatcgc ccgccaactg agcgttccgg gaaatctcaa tcttttaggc tttgtgacgc
     8221 tcatttacgg cattggacaa atcctcggcc cggcgctgac cagtatgctc ggcaatggaa
     8281 catcggcgct tgccggcgcc actctctgcg gcgcggcggc gttgtttatt gctgcgctta
     8341 tcagcacagt acaattattt aagctgcaag tggtcacttc atgaggagtg tttcccttac
     8401 cactcaagaa attcgaccgc aaccgttgat gtcagccaga ctccgttttc cgcttgccag
     8461 aaaggaatgc ctcgtttcgc catttcctgt gctttgacgg ttaagacaac cggcgatccg
     8521 tgtcttgctc ccactttgcg tgccgttgct tcatcagcag agagatgcac gtaatgacga
     8581 tcccctgcaa tcagcccctg ttttttttat ctcgtcaagg aaacggcttg ccgtaccgtg
     8641 gtagagaaac tgtggcggtg ttttttcggc aaaggaaata gcgacctgcg aagtcgaatg
     8701 cccctgaacc gcgcggatgc acctaccatc actggaataa ctaaaacgct ttttatcgct
     8761 ggttgcgacc acggtatcca gcaatgcacg ggttaatcgc ttgcccgctt tttgggcaca
     8821 aagtatgagc ttatcgatat ccgcccatcc ttcacggtcc agtacgatac caatcgcctc
     8881 cggtttgtgt cggaggacaa aacttaaaaa cttgctcgta tccgccagct ctttttcgtt
     8941 gtgctttgcc atctcgtttt cgtccctgga ttttctgttt ttatttacca atgtcattgt
     9001 cactgggttt atgaattttc tgcaactcaa tcctgcgcag aaccttttcc acacagcgta
     9061 atgtttcccc tatgcaaaaa acgcatagcc agaaacatac ttgcattttc cccataccca
     9121 catggctgat aaggtttttc agttccagga attttcctgg ctcaagcaac acacaaacac
     9181 aaaaaaacaa tggggattgt tatgacacaa caaggggatg ctgtagccgg ggagctggcg
     9241 acagaaaaag tgggcattaa agggtatctg gctttttttc tcaccataat cttttttccg
     9301 gtgttttttc cggaacagac agctggtggc gcgtttttga tttttccgtt ctgaacggat
     9361 cgtttgggca actgcctggt gcgaacggag ccaccacctc atttcgcggc gcgggtggtg
     9421 cgggggctaa agatggcttt ctctttgcgc tggagctggc accgtcagtc attctctctc
     9481 tggggattat ttcaattacc gatggtcttg gtggattacg cgccgcgcag cagttaatga
     9541 cacctgtgct aaaaccgttg ttgggcattc cagggatctg ctcgctggcg ctgatcgcta
     9601 acttgcaaaa cactgatgcc gccgccggta tgaccaaaga gctggcgcag gaaggtgaaa
     9661 ttaccgaacg cgataaagtg attttcgccg catatcaaac cagcggtagc gccatcatca
     9721 ccaactactt ctcttccggc gtcgcggtgt tcgcctttct gggcacgtcc gtaatcgtac
     9781 ctttagccgt catcctggtg tttaaatttg tcggagccaa cattttgcgc gtctggctta
     9841 acttcgaaga acgtcgcaac ccaacgcaag gagcgcaagc atgacaactc aggtccgcaa
     9901 aaacgtcatg gatatgttta tcgatggcgc gcgccgtggc tttactatcg ccacgaccaa
     9961 cctgctgcca aacgtggtga tggcgtttgt catcattcag gcgctgaaaa ttaccggcct
    10021 gctcgactgg gtggggcata tctgtgaacc cgtaatggcg ctgtggggat tacccggtga
    10081 agcggcaacc gtccttttag ccgcattaat gagtatgggg ggcgcagtcg gtgttgccgc
    10141 cagtctggca accgctggcg cattaaccgg tcacgatgtc accgttttac tgcccgcgat
    10201 gtatttaatg ggcaacccgg tgcaaaatgt cggtcgctgc ctggggacag ccgaagtgaa
    10261 tgccaaatat tacccgcata tcattacggt ctgcgtgatt aacgcattgc tgtcgatctg
    10321 ggttatgcag cttattgttt aacaaggagt taccatgatt gattataccg cagccggttt
    10381 taccctgctg cagggagcgc atttgtatgc gccggaagat cggggaattt gcgatgtcct
    10441 cgtcgctaac ggcaaaatta tcgccgttgc cagcaatatc ccttctgaca ttgtaccgaa
    10501 ctgcacggtt gtcgatctca gtgggcagat cctctgccca ggttttattg atcaacacgt
    10561 ccatttgatt ggcggtggcg gcgaagcagg tcccacgacg cgcacgccgg aagtggcgct
    10621 aagtcgcctg acggaagcgg gcgtcacgtc agtggttggt ctgctgggca ccgactctat
    10681 ctctcgccac ccggaatccc tgctcgccaa gacccgtgcg ctcaatgaag aaggcatcag
    10741 cgcctggatg ctgaccggcg cttatcatgt cccttcccgc actattacgg gttccgtgga
    10801 aaaagacgtg gcgattatcg atcgtgtgat tggcgtgaaa tgcgccatct ctgatcaccg
    10861 ttctgccgca ccggacgttt atcacctggc taatatggcg gcagaatccc gcgttggcgg
    10921 tttgctcggc agtaaacctg gcgtcaccgt gttccacatg ggcgacagta aaaaggcgtt
    10981 acagcctatt tatgacctgc tggaaaactg cgatgtgccg atcagcaagc tgctgccgac
    11041 ccacgttaac cgcaacgtac cgttgtttga gcaggcgctg gagttcgcgc gcaaaggcgg
    11101 caccatcgat atcaccagca gcattgacga accggtcgcc cctgccgaag gtattgcccg
    11161 cgccgttcag gcgggtattc cgctggcacg cgtcaccctc agctccgacg gcaacggtag
    11221 ccagccgttc ttcgatgacg aagggaattt aacccatatc ggtgttgcag gttttgaaac
    11281 gttgctggaa accgtgcagg tgctggtcaa agactatgat ttcagtatca gcgatgccct
    11341 gcgcccgctc accagtagcg tagccggttt ccttaacctg agcgggaaag gcgaaattct
    11401 gcctggcaat gacgcagact tactagtcat gacgccagaa ttgcgcattg agcaggtata
    11461 tgctcgcggc aaactgatgg tcaaagacgg caaagcctgc gtgaaaggaa cgtttgaaac
    11521 ggcttaaacg gttgtcagcc gccctaatgg acgtagaatg cccgcaaggg cggctgacag
    11581 agtaaaacgt aatggatgac tgttgtgcgg ttttgcataa tattgaaacc aaatggcttt
    11641 atgattttct gaccctggaa aaatgccgca atttttccca ggcggcagtc agtcgtaacg
    11701 tctcgcaacc ggcattcagc cgccgcatcc gcgcgctgga acaggcgatt ggcgttgaat
    11761 tgtttaaccg ccaggtgacg ccgctgcaac tctcagaaca agggaaaatc ttccattcgc
    11821 agatccgcca tctgttgcaa cagttagaaa gtaaccttgc agagctgcgt ggcggcagcg
    11881 attacgcgca acgtaaaatc aagatagccg ctgcacactc tctttccctc ggtctgttac
    11941 cgtccattat cagccagatg ccgccgctct ttacctgggc gattgaagct attgatgtcg
    12001 atgaagcagt cgataaactg cgtgaagggc aaagtgactg tattttttcc tttcacgacg
    12061 aagatttgct ggaagcaccg tttgaccaca ttcgcttatt tgaatctcaa ttgttccccg
    12121 tttgcgccag tgacgaatac ggagaagcaa tttttaacct cgcgcagcca cactttccgt
    12181 tactgaatta cagccgcaac tcctacatgg ggcgattgat taatcgcacc ctgacgcgcc
    12241 acagcgagtt aagtttcagc accttttttg tctcttcgat gagcgagcta ttaaagcagg
    12301 ttgccctcga cggctgtggg attgcctggc tgccggagta tgccatccaa caagaaattc
    12361 gcagcgggca actcgttgtg ctgaatcggg acgaactggt gatcccgatt caggcctacg
    12421 cataccgtat gaatacccgc atgaatccag ttgccgaacg cttctggcgt gaactgcgcg
    12481 agctggagat tgtgcttagc tgacattctc aagcgtcgca ctgcgccaac cgccattatc
    12541 ccagaccaga tcaaacgtta gcggttcatc gtcgtggtac agcattatct caaggctgat
    12601 cgccagagtg tggcagtacg cttctttcaa attaacctgc aacgccgcaa tccgtggctc
    12661 atgaaataac agtgcagaac gcagctgacg gcaataccag ctctggagat gtttgtcgct
    12721 cgggttatgc acttgccact cgggcatgcc tgaaacaagt aatgacggta atgccgaatg
    12781 aggagaatta aaaagagtga ggagatcgct gcataccgat ttacgcagca atgacgtttt
    12841 attgcctgaa atttcaggta aaacagcctg aagtgattgg cgcatcattt tgcgcactcc
    12901 tgacgtttag caacatatgc ggcttgccct gaacaccggg caccactgta ttgatgctca
    12961 ttttccatag ccattccctt ttgttcatta catccatgtc agtctgagac aggcctgaat
    13021 cctgtcagca aagtataaaa ccttacttgc ctatgaatat ctactgactt ttcaggaaaa
    13081 aagtcatgat ttgataaaaa tcatcaaact caaaaaaaaa ccgctagtat attctgaata
    13141 ttccgaatag ttacgtagat gaaaatactt gtcaccgccg ctacttaatt ccggtgggaa
    13201 attatttatt tccgcataat cagccatgta ttatttgaaa caattagttt gtaaataata
    13261 taaattgata acatatcaaa tacatcaaaa ataccattca taggcattat taatatagac
    13321 atcaatatag caacatcaaa ttccaattag taataagata tgctttttaa ttgcatgaaa
    13381 ataatttcaa atgagcgttt tttgatactt tagagtgttt cctacccttt aatatcaccg
    13441 tgtagagttg atatcactac aacagaaaca tgcatgtcat ttttttactt cttttttact
    13501 acagaaaaat ttatctattt ttctaaacat cggtgaaata ctcataaaag gtaactatta
    13561 tgtctatgcc attaagcaat gcccttcaga gtcaaattat tacagataat cacttccttc
    13621 atcatccaaa agtcgacaat aagttaacac gtgaatatga atatacacgc atggatacgg
    13681 aaaatatcta tcttctgcct cttactcgtg gaaataacca taattacgat ggaaaaagcg
    13741 ttgtcgaaat tagaaaactt aatattggca aacagtcctg gccatttaat tatgcgacag
    13801 atacatgcag agaattcaat ggtattacaa caacaggacg tatgctctat cgaaacttga
    13861 aaatcacctc agctttagac gaaatatatg gtggcatatg taaaaaggcg catgctgcta
    13921 cagagttagc agaaggttta cggctaaatt tatttatgaa gagccctttc gatcctgttg
    13981 aggactatac agttcatgaa ataacattag gccctggtta caatgttcct ggttatgccg
    14041 gaaccacgat aggatatatt tcaacccttc cagcttctca ggcaaaaaga tggaccaatg
    14101 agcagccaag aattgatatc tatattgatc agataataac tgtctcaggg gtggcaaatt
    14161 cttccggatt cgcccttgcc gcattactta atgctaatat tggaatggga aatgacccaa
    14221 taattggtat agaagcctat cctggtaccg cggagatcca tgcaaaaatg ggatataacg
    14281 ttatccccgg tgatgaagat gcgccactca aacgcatgac tctgcaaccg tcatctcttc
    14341 cagaactgtt tgaattaaaa aatggtgaat ggaattatat tggcaaataa ccactgagaa
    14401 gaatgagtac taacattcag gttatataga tatttaaaca ataccctgca atttacaaag
    14461 taatactcat tgcgacttct taatttaaga aagcgcaagg aacgtttacc cttgcgctta
    14521 tcataatcag tcaggcgtcg actttatcca gcggccatga atcaaacaga tagccgtcaa
    14581 aataaatatc gtcaacgttc gagaattcca gcagacgttg cttaacgttt tccagatgct
    14641 gccacattgc cagcttcgcc gctcgggcat cttttttgat taacgcggca aggatctgtt
    14701 tgtgatcgcc caaccactct ttgcgataca ggctgtcatc cagatggctg tgcaactgga
    14761 tccacattgg attgttttcc cgccactgcc aggactgacg gaataactcc accagcatgc
    14821 tgttatgcgt tgcttcagca atggcgagat ggaactgcat gtcaccgctt tcgctgctac
    14881 ccggcgcgct ggaagccagt tcacgctctt ccagttgcaa tgcctgacgc attttgacga
    14941 tatcttcgcg ggtagcctgc agggcggcaa attccgcgat gttgctctca agaagctgtc
    15001 gcgcctgcaa caattcaaag gggccggcat cattgcagac gttggcatcc ggactgtctg
    15061 tgttgtggct gcctgagcta tcaagaacat agataccggc accccggcgc acttccacca
    15121 gccctttgat ctccagcatg atcagcgctt cacgtaccac cgtccgcgtg acatcaagca
    15181 tttctgcaat ttcacgctcc ggcggcagcc gttcgccagg attgtacggc gtctttatga
    15241 tcagatcgcg gatcatcgcc ccgacttcct ggtaaggtct ttgcgcagag gtggcagatt
    15301 tcatggtgtt gtgtccgtta ggtgcggtta atcaaatttt tgccggatgc ggcgtgaacg
    15361 ccttatccgg cctacaacgg gcaattttac ggcccccgtt aatctcaaac tataccatta
    15421 gcactggaag ttagcacgta caggtgggca aaaaaacgaa aactggtcaa ccaaatatca
    15481 gtttgattga ccagtaagtc tgtagggtaa tcagttagtt acagcgcagc cacacactcg
    15541 cgcgcaccgc gttcgcacag ctgctgatat gccgccgtca ccgcgccaac aaagtcggca
    15601 ttctgcggca gatcatcggc aaaaataccg ctcaggccca gcagcgcttt cacgcggtct
    15661 gcgccctgat actgcgcgtt aatcttctgg aactcggcca gcatcgggtc gaccacgtca
    15721 atggcattac cctgctcatc cacgccctgg gtgtaacgca tccagccagc cacgcccagc
    15781 gccaggtgac gccagctgcc gccattttgc aggtgcagac gcaccgggtc cagcagacgc
    15841 tgcggtaact tctggctgcc gtccatcgca atctgccagg tacggtgacg cagagacggg
    15901 ttgctgaaac gctagatcag cagcgtcgca taggccttca ggtccgtacc ctccggcata
    15961 gacagcgttg gcgcttgttc ctgcatcatc agggcaaagg ccgctttgcg ataatccggg
    16021 ttagtcatgg tgtcggcaat agtttcatag ccgccgaggt aaccgaggta tgccaggaaa
    16081 gagtggctgc cgttcagcat acgcagcttc atcatttcga acggcacaac gtctgcaacg
    16141 aactgtgcgc ccactttatc ccagtccggg cgaccattaa cgaagttatc ttcaatcacc
    16201 cactgacgga acggttcgca ggcaatggcg cacgggtcgt aaacacccag ctggtcagca
    16261 atttcctgta aggtttctgg cgtcgccgcc ggaacgatgc ggtcaaccat ggtgcacggg
    16321 aaggtgacgt tctcttcaat ccatgccgcc agctgcgggt cacgtgcctg agccagcccc
    16381 agtaccgcga ccttcgccac atgaccgttt tcacgcacgt tatcgcagga catcaccgta
    16441 aatgctttca gccctttttc acgacgcaga cgcaaggctt cgacgatgta accaatcgcg
    16501 gacttcggcg cagtcgggtt ttctagatcg tgcttgatca gcgggttatt gagatccagt
    16561 tgaccgcttg ccgcatcagc gcagtagcct ttttccgtga ccgttagaga gacaatcgcc
    16621 gtttgcggac gcgccatcgc gttgagaata ccttcgcagc cgtcgatttc cggatgcagc
    16681 gcttctttca tcgaaccgat aattttcagc tcggtgcttt ctgcgccttt ttccgctacg
    16741 gtgtacagca gttgctgttt tttcaggttt tcgatcagca cgcggtcgtt gcctggcatc
    16801 aggttaactt cgcagatgcc ccagtcgctg tcggtgcttt ccagcagatg atgggtatac
    16861 agcgcctgat gtgcgcggtg aaacgccccg caaccgagat gcacaatgcg tgattccaga
    16921 cgagaatgat cccatgacgg acgggcaacc ggcagattgc tgtcaacaat agtagtcatc
    16981 gtaaactcca gaatccgtct tcagagagtg acggcaagga agaaggaacc ggcacggcgc
    17041 gcagccatgc cggtggatat taacggctaa agaaagcgcg ctggatcgcc agttcgacac
    17101 cgcgaacttc ggccaggcct ttcagacgac caattgcgga gtaacctggg ttggttttct
    17161 tcttcaggtc gtccagcatc tgatgaccgt ggtccggacg catcgggatc aggtcttctt
    17221 tgccttccgc tttacgacgg tgttcttctt caacaatcgc tttcaccact tcgtacatat
    17281 caacgtcacc gttcaggtgc gccgcttcgt ggaaggtttt cgggttatct tcacgcatgg
    17341 tggagcgcag atgggtgaag taaatacgcg gaccgaactg cttgatcata tcaaccagat
    17401 cgttgtcagc acgcacgccg taggaaccgg tgcacatggt gaaaccgttc gccatgctgt
    17461 ttacggtatc aaccatccac tgcatatctt caatggtgga aacaatgcgc ggcaggccga
    17521 ggatcgggcg cggcggatcg tccgggtgaa ccgccatacg cacgccaact tcttcagcaa
    17581 ctggaataat cgctttcagg aagacggcaa agttttcgcg cagcttcgct ttatcgatat
    17641 ctttgtacag ctccaggtgc ttacggaact ggtcgagggt atacccttct tccgcgcccg
    17701 gcagaccggc aatgatgtta cgcgtcagac gcgctttgtc ttcatcgctc atagtggcga
    17761 agcgttcagc tgcctgagca atttcttctt cggtgtaatc cgcttccgcg cctggacgtt
    17821 tcaggatatg catttcgaat gcagcgaatt cgatctggtc gaagcgcaga gctttggagc
    17881 cgtctggcag cacgtattcg aggtcagtac gggtccagtc gagcaccggc atgaagttgt
    17941 agcacacggt gcgaatgccg cactgcgcca ggttgcgcag agtctgctga tagttagcga
    18001 tccactgctc atagttgcca gtgtgggttt tgatatcttc gtgaattggt acgctttcta
    18061 cgacagacca caccaggcct gcgtcttcaa cgatcgcctt gcgtttgagg atctcttcta
    18121 cggaccatac ttcgccgttc gggatatggt gcagcgcggt aaccacgcca gttgcgcccg
    18181 cctgacggac atcagctaaa gaaaccagat cgtttgggcc gtaccagcgc caggtctgtt
    18241 ccatgatttt tcctctttca catagtgggt tccacagcaa agagacgcgg aaccttggag
    18301 ttgtttaggt atccggatga acaaccagac cgcagccgtg gcgttgcatc ggatgagatg
    18361 gcgtataagt tctacctttt ggtaagatat atcaacccaa atcctgaaat tggttaacca
    18421 aatcacaaga atttcactct catggttgtt gctgcaaatt gcagcaaaag gtaatcgatg
    18481 gttattgatc agaggatgtg acattcatcg caacaatggt tgaccaattt acataacatg
    18541 tcgcccaaaa taacaacggt tcaaccaggt aaggtaaaac gttatgcatg tgcttaacat
    18601 tctctgggta gtattcggca ttggtctgat gctggtactg acaacgaccg caggttcaga
    18661 cacattcact gcattagcaa tgcctcttag attattttga cctgtcagta aaagacacgt
    18721 tgaaaacctg gggtctgctg gaactggtca actccgtggt tgggctgatt attagcaagg
    18781 tagcgtaaaa gaacaccaga gcctgccaat ggcaggctct gactgatgac aaagtctaaa
    18841 aatgtgcccg gacagtcccc tcgcccctcc ggggagaggg ttagggtgag gggaacagac
    18901 cagcaaagtg cgctttgttt atgccagatg cgacgctgac gcgtcttatc tggcctacaa
    18961 agggctaacg tgcaggtttt tagcttcagg taatattgcg taactgcatt agcaatgccc
    19021 tgtgatttct ttattgataa acaaaagtca cgccaataat cgattgcaca ttccctgcag
    19081 tcacctgccc tccggtacgt gcgtaatttg ccgttaatcc cagacttacc gccgaagttc
//
LOCUS       DAJVUP010000076        19087 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.076, whole genome shotgun sequence.
ACCESSION   DAJVUP010000076 DAJVUP010000000
VERSION     DAJVUP010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19087)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19087)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19087
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.076"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(32..2479)
                     /gene="glgP"
                     /locus_tag="OQQ75_002371"
     CDS             complement(32..2479)
                     /gene="glgP"
                     /locus_tag="OQQ75_002371"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen phosphorylase"
                     /protein_id="HCS1976668.1"
                     /translation="MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNA
                     TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGAL
                     EAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI
                     VNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQ
                     IIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY
                     SGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRL
                     LIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF
                     LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF
                     ADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCD
                     FPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI
                     TRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
                     VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML
                     DHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRY
                     RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDR
                     TIKEYADHIWHIDPVRL"
     gene            complement(2498..3931)
                     /gene="glgA"
                     /locus_tag="OQQ75_002372"
     CDS             complement(2498..3931)
                     /gene="glgA"
                     /locus_tag="OQQ75_002372"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HCS1976669.1"
                     /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF
                     PDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA
                     YTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV
                     HNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE
                     ITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN
                     KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVL
                     QEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL
                     PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRASLWRF
                     VQRQAMAMDFSWQVAAKSYRELYYRLK"
     gene            complement(3931..5226)
                     /gene="glgC"
                     /locus_tag="OQQ75_002373"
     CDS             complement(3931..5226)
                     /gene="glgC"
                     /locus_tag="OQQ75_002373"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HCS1976670.1"
                     /translation="MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA
                     VHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLL
                     PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG
                     ARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVF
                     DADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRD
                     VGTLKAYWKANLDLASVVPELDMYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLV
                     SGGCVISGSVVVQSVLFSRVRVNSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACVIPE
                     GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLGHKQER"
     gene            complement(5244..7217)
                     /gene="glgX"
                     /locus_tag="OQQ75_002374"
     CDS             complement(5244..7217)
                     /gene="glgX"
                     /locus_tag="OQQ75_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HCS1976671.1"
                     /translation="MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQE
                     HRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDG
                     EFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWDSTIIYEAHVKG
                     LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNY
                     WGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL
                     FSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR
                     FDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEW
                     NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC
                     VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQG
                     TPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVE
                     NRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPA
                     GEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR"
     gene            complement(7214..9400)
                     /gene="glgB"
                     /locus_tag="OQQ75_002375"
     CDS             complement(7214..9400)
                     /gene="glgB"
                     /locus_tag="OQQ75_002375"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HCS1976672.1"
                     /translation="MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDAT
                     DVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFG
                     PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD
                     GRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETAS
                     LICGLPEKVVQTEERKKANQFDASISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA
                     KWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVIL
                     DWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALY
                     WIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQV
                     SGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT
                     FGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL
                     FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY
                     GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTD
                     SMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE"
     gene            complement(9673..10776)
                     /gene="asd"
                     /locus_tag="OQQ75_002376"
     CDS             complement(9673..10776)
                     /gene="asd"
                     /locus_tag="OQQ75_002376"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1976673.1"
                     /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA
                     PSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLR
                     MKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVAT
                     YQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNF
                     GVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQ
                     AFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK
                     LNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA"
     gene            10968..11561
                     /gene="yhgN"
                     /locus_tag="OQQ75_002377"
     CDS             10968..11561
                     /gene="yhgN"
                     /locus_tag="OQQ75_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YhgN"
                     /protein_id="HCS1976674.1"
                     /translation="MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVREL
                     LIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAG
                     EEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFL
                     RLLGEKGVNALERLMGLILVMMATQMFLDGIRMWMKG"
     gene            complement(11618..12958)
                     /gene="gntU"
                     /locus_tag="OQQ75_002378"
     CDS             complement(11618..12958)
                     /gene="gntU"
                     /locus_tag="OQQ75_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1976675.1"
                     /translation="MTTLTLVLTAVGSVLLLLFLVMKARMHAFLALMVVSMGAGLFSG
                     MPLDKIAATMEKGMGGPLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAH
                     YAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVP
                     GPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHL
                     GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV
                     AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT
                     GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAG
                     GSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIAFQLLS"
     gene            complement(12962..13489)
                     /gene="gntK"
                     /locus_tag="OQQ75_002379"
     CDS             complement(12962..13489)
                     /gene="gntK"
                     /locus_tag="OQQ75_002379"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417894.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HCS1976676.1"
                     /translation="MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP
                     RRNIEKMASGEPLNDDDRKPWLQALNDAAFAMLRTNKVSLIVCSALKKHYRDLLREGN
                     PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL
                     EGVVASTIEVIKKGK"
     gene            complement(13628..14623)
                     /gene="gntR"
                     /locus_tag="OQQ75_002380"
     CDS             complement(13628..14623)
                     /gene="gntR"
                     /locus_tag="OQQ75_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001693277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HCS1976677.1"
                     /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL
                     DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYG
                     YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
                     GFDNFEAARQMTTAIIARGHCHIAYLGARLDERTIIKQKGYEQAMLDAGLVSYSVMVE
                     QSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHG
                     HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKMLDLGFTLSPGGSI"
     gene            complement(14847..15542)
                     /gene="yhhW"
                     /locus_tag="OQQ75_002381"
     CDS             complement(14847..15542)
                     /gene="yhhW"
                     /locus_tag="OQQ75_002381"
                     /EC_number="1.13.11.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004213399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quercetin 2,3-dioxygenase"
                     /protein_id="HCS1976678.1"
                     /translation="MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVIN
                     DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHS
                     EYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDM
                     ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHAD
                     SDSEVLLFDLPPV"
     gene            complement(15665..16702)
                     /locus_tag="OQQ75_002382"
     CDS             complement(15665..16702)
                     /locus_tag="OQQ75_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1976679.1"
                     /translation="MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ
                     APIYSHIHFISDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL
                     AQAKELFALAKSKGLSVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA
                     ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD
                     LKAIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGV
                     PEYVNDEGVTVREEMKPEMGDYGRVYDALYQTITHGAPNYVKESEVLTNLEILERGFE
                     QASPSTVTFAN"
     gene            17034..17522
                     /gene="yhhY"
                     /locus_tag="OQQ75_002383"
     CDS             17034..17522
                     /gene="yhhY"
                     /locus_tag="OQQ75_002383"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1976680.1"
                     /translation="MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQER
                     LADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMRE
                     MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR
                     VK"
     gene            17759..18958
                     /locus_tag="OQQ75_002384"
     CDS             17759..18958
                     /locus_tag="OQQ75_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000065895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp1 family type VI secretion system effector"
                     /protein_id="HCS1976681.1"
                     /translation="MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSL
                     LNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYY
                     YIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFL
                     PNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEK
                     TAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLA
                     NLRKEFNKTVRKNFLIKLAKTSEASGRFNAADLLRMRKGNVPLNYNVHHKLSLDDGGT
                     NDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPPMKNVMNASH
                     TIKHGAV"
BASE COUNT         4885 a         5053 c         4644 g         4505 t
ORIGIN      
        1 ccctttggcc ccgttctatt tattggtgaa cttacaatct caccggatcg atatgccaga
       61 tatgatcggc gtactctttg atagtacggt cagaagagaa gtagcccata ttggcaatgt
      121 tcagcatcgc ttttgcggtc cactcttcct gaagctcgta gagttcgtcg actttatcct
      181 gacaatcgac atagctgcga taatccgcca gaacctgata gtgatcgccg aagttgatca
      241 gcgaatcaac cagatcgcga tagcgacccg gatcttccgg actgaataca ccgctgccga
      301 tttgcgtcag cacctgatgc agctcctcat ctttctcgta gtattcacgc ggtttgtagc
      361 cctgacgacg cagttcttcc acttcttccg ctgtgttacc aaaaataaag atattgtcag
      421 caccgacatg atccagcatc tcgacattcg caccgtccaa cgtaccgata gtcagcgcac
      481 cgttaagcgc aaacttcatg ttactggtgc cggaagcttc cgtccctgcc agcgaaatct
      541 gttcagacag atctgccgcc ggaatgatca actgcgccag gctaacgctg tagttcggga
      601 tgaacacgac tttcagctta tcgccaatct gcggatcgtt gttgatcact ttcgctacgt
      661 cattgatcaa atgaataatg tgcttcgcca tgtaataggc cgaagccgcc ttaccgccaa
      721 aaatattcac gcgcggtacc cacttcgcat ccgggtcggc cttgatgcgg ttatagcggg
      781 taatcacatg caacacattc atcaattgac gtttgtattc gtgaatacgt ttgatttgta
      841 catcgaacaa cgcctttgga ttcaccacca cattcagctg ctgggcgata tactctgcca
      901 gacgcttttt gttctccagc ttcgcctgat gcacagcgtg attaaccatt gggaaatcac
      961 agtgttgttg cagctcatta agcaggctaa ggtcggtgcg ccagttacgg cccaggtgtt
     1021 cgtccagcac ggctgaaagc gatgggttcg ctaccgctag ccagcgacgc ggcgtcacac
     1081 cgttggtgac gttggtgaaa cgacccggga agattttcgc aaagtcggca aacaacgatt
     1141 gcaccatcag attagagtgc agttccgata caccgttaac tttgtggctc acaacaaccg
     1201 ccagccaggc catacgcaca cgacgaccgt tggattcatc aatgatcgac gcccgtccca
     1261 gcagatcggt atcgttcgga tactgttcct gcaaggtttt caggaaatag tcgttgattt
     1321 caaagatgat ctgcaggtga cgcggcagaa ttttacccag catatcaacc ggccaggttt
     1381 ccagcgcctc gctcatcagc gtgtggttag tgtaggagaa gacctgacaa cacacctcaa
     1441 acgcgtcgtc ccagctaaat tggtgctcat cgatcagcag acgcatcatc tcaggaatcg
     1501 acagtaccgg atgggtatca ttgagatgaa tcgcgatttt atccgccagg ttatcgtagg
     1561 ttttatgcaa ctgataatgg cggcttaaaa tgtcctgaat ggtcgaggaa accagaaagt
     1621 attcctgacg caggcgcagc tcacgcccgg agtaggtgga gtcatccgga tacagtacgc
     1681 gagatacgtt ctcggagtgg tttttatctt ccactgccgc gaagtagtca ccttggttga
     1741 atttaccgag gttaatttcg ctactggctt gcgcactcca caaacgcaac gtgttggtcg
     1801 cgtcggtgtc gtaaccaggg attatctgat cgtaagcgac tcccagaatc tcttcggttt
     1861 caatccagcg cgttttttta ccttcctgct gaatgcgacc accaaaacgg actttatagc
     1921 gcgtgttgtg gcgtttgaat tcccacgggt taccgtattc cagccagtag tctggcgact
     1981 ctttctggct accgttaacg atgttctgct tgaacatacc gtagtcatag cggatgccgt
     2041 aaccgcgccc cggcaaccct aacgtcgcca gagaatcaag gaagcaagcc gccagacgtc
     2101 ccaggccacc gttaccgagg cctgggtcat tttcttcatc aatcagctct tcgagattta
     2161 accccatcgc ttccagtgcg ccctgtacat cttcgtaaat tcctagcgac aacatggcgt
     2221 tggagagcgt acggccaatc aaaaactcca tcgacaggta gtaaacctga cgagtttctt
     2281 gcgacaactg ggcacggttt gaacgtaacc agcgctccac gagacgatcg cgcacagcaa
     2341 ataacgttgc gttcagccat tcatgtttat tggcgacgac cgggtccttt ccaatcgtaa
     2401 acatcagctt gtaagcgata gagtgcttaa gagcttctac gctaagcgtg ggcgatgaat
     2461 atgtaaacgg agcattcata taggcgtttc ctgaaaacta tttcaagcga tagtaaagct
     2521 cacggtacga cttcgccgcg acctgccagc taaaatccat tgccatagcc tgacgttgca
     2581 caaaccgcca cagtgaagca cgagaccaca gtacaaaagc acgtcgaata gcccgtaaca
     2641 gcgaccaggc attactatct tcaaagacaa acccactggc gacgccatct gcaaggttct
     2701 caagagaaca gtcagaaacc gtatcagcaa gcccaccggt gcgccgcact aacggcagcg
     2761 taccgtactt caatccataa agttgcgtta agccgcacgg ttcaaaacgg ctgggcacca
     2821 gaatgacgtc cgcgccgccc ataatgcgat gcgaaaatgc ttcgtgatag ccaatctgaa
     2881 cgcccacctg gccggggtat tccgctgccg ccgcaaggaa accttcctgc agcaccggat
     2941 cgcccgcgcc gagtagcgcc agctgcccgc cctgctccag aagacccggt aaggcttcca
     3001 gcaccaggtc gagacctttc tggctggtca gacggctcac cactgcaaaa agcggcactt
     3061 tatcgtcaac cttaagcccc attgcgattt gtaactggcg cttattttcc gctttatctt
     3121 ccaacgtatc gcgggtgtaa cgcgaggcca acagtaagtc cgtctctgga ctccagattt
     3181 tctcgtccac gccgttcagt acgccggaaa gacgcccttc acggtgacgc tgttgcaaca
     3241 gaccttccat accgtaggca aactgcggtt cggtgatctc gcgagcgtag gttggactga
     3301 ccgccgtaat gtgatcggca tagtacagac cggccttcag gaaagagatt tgtccgttga
     3361 attccagccc atgaatatta aagaatgacc atggcaattg gatgtcattc atgtgatgtg
     3421 cataaaacat gccttgatag gccaagttgt gcacagtaaa caccgacttc gccggacgcc
     3481 cgcgcgccgc cagatacgca ggcgcaaggc ctgcatgcca gtcgtgcgca tgcaccacat
     3541 caggacgcca gaatgggtca agcccgctgg ccatttctgc cccaacccac cccagcagcg
     3601 caaaacgcaa tacgttgtcg gtataggcaa ataagttggt atcgtgatac gggcttcccg
     3661 gacgatcata gagatgcggc gcgtcaatca ggtatatgcc aaccccgttg taatgaccga
     3721 acaacagcgt gatatgtccg gcgaaggtat cacgacggga tactacctgc gcatcggtca
     3781 cgccacggcg aatatcggga aatgcaggca acagtacgcg agcgtcaacg ccgtctgcga
     3841 tttgtgctgc gggtaatgcc ccaataacat cagccagacc gccggtttta agcagcggga
     3901 acatctctga acatacatgt aaaacttgca ttatcgctcc tgtttatgcc ctaacttccg
     3961 tagcatttcg cgcgttacca gcacgatgcc ttcttctgaa cgatagaaac gacgtgcatc
     4021 ttcctctgcg ttttcaccaa tcaccatgcc ttccgggata acacaagcac gatcgatgac
     4081 gcagcggcgc agacggcacg agcgacctac ccatacttcc ggtaacaata cggcggaatc
     4141 aatgttgcag aatgaattca cgcgaacgcg cgagaacaga acggactgca ccaccaccga
     4201 accggagatc acacaaccgc cggataccag tgagttaagg gtcatcccgt ggctaccgga
     4261 gcgatcctgc acgaatttcg ctggcggtaa tgattcattg taggtgcgaa ttggccaatt
     4321 gcgatcgtac atatccagtt ccggcaccac agaggccaga tcgagattcg ctttccagta
     4381 agctttcagc gtacccacat cgcgccagta cggctcggca tccgggtcgg attgtacgca
     4441 agagagcggg aacgggtgcg cataggccag accggcttcg gtgatcttgg gaatcaaatc
     4501 tttgccaaag tcgtggctgg agttctcatc acgatcgtct tcttccagca gttcatacag
     4561 atagtcggcg tcaaagacgt agatacccat actcgccaga gatttgctcg gatcgttcgg
     4621 cattgacggt gggttagcag gtttttcaac gaattcgata attttatcgt tctcatcaac
     4681 cgccataacg ccaaatgcgg aggcttcttc aatcggtact ggcatacaag caacggtgca
     4741 acgtgcgcct ttttcgacgt gatcgataag catacgcgag tagtcttgct tgtagatatg
     4801 gtcgcccgcc aggatcacca cgtattccgc tttataacgg cggataatgt cgaggttttg
     4861 ggtgaccgca tctgcggtgc cgcgatacca gttttcccct ttcattctct gctgtgctgg
     4921 cagcagatcg acaaactcgt tcatttcttc attgaagaat gaccagccgc gctgaatgtg
     4981 ctgcaccaga gtgtgggact ggtactgggt gatcacgccc atacgacgga tcccggagtt
     5041 gatgcagtta gacagcgcaa agtcgataat gcggaactta ccgccgaagt gtacggccgg
     5101 ttttgctcgc ttattggtta aatccttcag gcgggtacca cgtcctcccg ccagtatcag
     5161 ggcaacagat ttcaatggca gctggcgcgc caacattaag tgatcgttct tctctaaact
     5221 aaccatgact aactcctttt ttatcatctc tggaacacac acaatccgtg tgcaggtccc
     5281 tgccagacag ccgtaatcac tgggttatcc tctccagcga atgggggaat ggcgtgccac
     5341 tccccagcag gtaaaacaat ctctgttacc tcaagcgtgg cgttaattgc gatcaaaaag
     5401 cgatccgaga gcagaatttg cagctgtttc ggcccgtttt gccactcatc cgtgcttaaa
     5461 ggttgagcat atcgatttag ccaacggaca ttgccatcgc cttcttccca ccagcgattc
     5521 tccaccaaag cgggaatgcg cttgcgcaga tggattaacg cggcggtaaa tgcggttaaa
     5581 ccactgcttg cctgcgacca gtccaaccag gttaattggt tatcctgaca gtaggcattg
     5641 ttattgccat gctggctgtg accatgttcg tcaccggcca gtaacatcgg cgtaccctgg
     5701 gagagcaaca acgttgttaa caaggcgtga atactgtcgc gccgccgttc aaccaggtca
     5761 agagaaccgc ctaacccttc tttaccatga ttgttactgt aattgttgtt ggtcccgtcg
     5821 cgattttctt ctccgtttgc ttcattgtgt ttatggttga agcaaacgca gtcgcgaagc
     5881 gtaaaaccgt catgcgcagt gacgagatta atcgcggcac tcggcagacg accattacgt
     5941 ttaaaaacat cgctggaggc agcaaaacgc ccggcaaacg cccccagagg caaatcataa
     6001 tgtagccaga aacgacgggc agcatcgcgg aaatgatcgt tccactcggc aaacagcggc
     6061 gggaaatttc ccacctgata accaccaggg gcgatatccc acggttcagc aattaacttc
     6121 acctgcgaga gcaccgggca gttctggata gcggtaaaca acggcgcatc ctgacggaac
     6181 tctggcgtac ggcccatgac tgccgccaga tcaaagcgga aaccatcgac gtgacaggtt
     6241 tctacccaat aacgcaggca ggcgctggca taatccacca ccgccggatg actcaaattg
     6301 agcgtgttgc cgcaaccggt ccagttgtga taatcgccgt cttctcttat ccaataatag
     6361 ctacggttat cgatcccacg cagtgagaat aacgggccgt cgaggtccag ttccgcacta
     6421 tggttgagca cgatatcaag aatgacttcg atacccgctt tatgcagtgc tttgattgca
     6481 tcgcgaaact catccagcgc cgtttctggc gagcaggcat acgccggatg cagcgcaaac
     6541 atcgccaccg ggttgtaacc ccagtagtta cttagcccca tgcgttgcag acgtggttca
     6601 ctggcaaact gcgccactgg cagcagttcc agcgcggtaa tgcccaattg tttcaaatag
     6661 ttgatcatca ccggatgccc gagggcttta taagtgccac ggatctcgac cggaatctcc
     6721 gggtgcaagt acgttaatcc tttgacatgg gcttcataaa tgatggtgct gtcccacggc
     6781 gtgcgcggcg gggcatcatc ttcccagtca tagtgatcaa ccaccactac gcatttcggc
     6841 gcaatggcgg cgttgtcgcg atagtcaggt tcattatgac cggcgtgcag cagcgggtta
     6901 tctttaaatt ccccgtcaat ttgccgcgcg caaggatcaa tcaacaactt cgccgggtta
     6961 aagcgatgcc cctcggcggg ttgccagggg ccatgaacgc gataaccata acgcaaaccc
     7021 gggcgcgcat ccggcagata accgtgccaa atgtcgccac tgtgccctgg caagtcatag
     7081 cgatgttcct ggccattggc gtcaaagaca cacagttcta cccgctcggc atgagcggag
     7141 aaaagtgtga agttgacgcc ctgaccgtcg taatgcgcgc cgaggggagc gggtttgcca
     7201 atggcgagtt gtgtcattct gcctcccgaa ccagccagat agtggccagc ggtggtagtg
     7261 tcaggcttag tgaatgctga cgaccgtggc tggcaatctc atcgctgtgt accgtgccgc
     7321 cattgcctgc attactgccg tgatagtgca tggaatcggt attgaggatt tcacgccatt
     7381 tgcctggctg attaatgccg aagcgataat catgacgcgg caccggcgta aagttactgg
     7441 caacgataat ttcgttaccc tctttatcgc gacgcacaaa gatcagcacc gagcgttctt
     7501 tgtcatccac caccagccat tcaaagccgt acgggtcaaa atccagttca tgcattgctt
     7561 tatggtggcg gtaggtgagg ttcagatcgc gcaccagacg ctggacaccg tggtgccagt
     7621 tatcgccacc ttccaacaga tgccagtcga ggctggcgtc atggttccac tcacggccct
     7681 gggcaaattc gttccccatg aacagcagtt tcttgcccgg gaatgcccac atccagccat
     7741 agtaggcgcg caggttagcg aatttctgcc atgcgtcgcc cggcatgcgg tcgagaatcg
     7801 attttttacc gtggaccact tcatcatgcg acaacggcag gacgaagttt tcagtgtagt
     7861 tgtagagaat cccgaaggtg agtttatcgt gatgatactg acgataaacc gggtcgagct
     7921 tcatgtagtc cagggtgtca tgcatccagc cgaggttcca cttgtaccag aagcccagac
     7981 cgcccatatc ctgcggacga gaaacgccag ggaaatcggt agactcctca gccattgtca
     8041 ccgcaccgga aacctgctca ccaagaatac ggttggtatt acgcaagaat tcaatcgctt
     8101 caagattctc gcgcccgcca aattcgttcg ggatccactc cccctcttta cggctgtagt
     8161 cgcgataaat cattgacgcc accgcatcga cgcgcagcgc atcaatacca aaacgttcaa
     8221 tccagtaaag cgcgttaccg acgaggaagt tactgacttc acggcgacca taattgtaga
     8281 tcagcgtatt ccagtcctga tgatagcctt cgcgcggatc gctgtgttca tacaagttcg
     8341 tgccatcaaa ttcggcaagc gcaaagtcat cggtcgggaa gtggcctggc acccagtcga
     8401 gaatcacgtt cagacccgct gcgtgtgcgg catcaatgaa ataacggaag tcgtcgcgag
     8461 taccaaaacg gcgggttggt gcatacaggc cggttggctg ataaccccaa ctgccatcga
     8521 agggatgctc gttaatgggc agtagttcga ggtgggtaaa gcccatccat ttagcataag
     8581 gcaccagttg atcggccagc tcgcggtagc tcaaccagaa attgttatcg gtgtggcgac
     8641 gccaggagcc caggtgaact tcataaatag agattgacgc atcaaactga ttcgcttttt
     8701 tgcgctcttc agtctgtaca accttttccg gcagcccgca aataagagac gcggtttccg
     8761 ggcgcatttg cgcttcgaag gcataagggt cggacttcag acgcaagttg ccattggcat
     8821 caatcatctc gtatttatag agctgaccgt tatgcgcccc agggataaac agttcccaaa
     8881 tgccgctctc tttacgcaga cgcatcgggt gacggcgacc gtcccagtag ttgaattgcc
     8941 caaccaccga gacccgacgg gcgtttggag cccaaacaga gaaacgcgta cctgtgacgc
     9001 catccatagt atctgcatgc gcgcctaagg tttcatacgg gcgcaggtga gtaccttcag
     9061 ataatagcca ggcatccatt tcctggatta gcgggccaaa acggtaagga tcatcaatca
     9121 ggttttgctg accatgccag acaacagcca actgatagcg gaaaaaattc ttacgtcgcg
     9181 gaatgacacc gctaaagaat ccccgtgagt caagacactc cagttttgcg agtttgcgcc
     9241 cggttttcgg ttcaatcacc cacacatcgg tagcgtcggg taaaagggca cggacttcca
     9301 gtcccgcggt ggttttatgc attcccagta cggaaaaagg atccgcaaaa tggcctgcaa
     9361 ttagcgcgtt aatcacgtct ctatcgatac gatcggacat gcttgtcttc ctgttttatt
     9421 gtgtcacccc atccaattgg atttttgact tctggttgtg acattttttt gacctgaacg
     9481 gcgcagcact ctgtgcatcc tctctgcgtc gtcctcactt caggtaaggc tgtgaatact
     9541 catgtattca gccaccctta aagaatagcc aatgctctat ttaactcccg gtaaatcatg
     9601 aaacatctgc gcttactcct gtattacgca ctaacagggg cggcatcgcg ccccagattt
     9661 aatgaataaa gattacgcca gttgacgaag catccgacgc agcggctccg cggcccccca
     9721 cagcagctgg tcacccacgg taaaggctga caggaactcc ggtcccatat tcagcttacg
     9781 caggcggcct accggcgtgg tcagcgtgcc ggtaacggca gctggggtta gctcacgcat
     9841 agtgatttcc cgatcgttcg gaacgacttt cgcccacgga ttgtgcgcag ccagcagttc
     9901 ttcgacggtc ggaatagaca catctttttt caatttaata gtgaatgcct ggctgtggca
     9961 gcgcaatgcc ccgacacgca cacataaacc atctaccgga attacggaag atgtgttgag
    10021 gatcttgttg gtttccgcct gccctttcca ctcttcgcgg ctctgaccgt tatcgagctg
    10081 tttgtcgatc cacggaatca ggctacccgc cagcggcacg ccaaagttat ccaccggcag
    10141 ctcaccgcta cgggttaagg ttgtgacttt gcgttcgata tcgagaatag cagaggacgg
    10201 ggtcgcgagt tcatctgcca catggccata cagatggccc atctgggtta ataactcacg
    10261 catatgtcgc gcaccaccgc cggaagcggc ctggtaggtt gcaacggaca cccaatcaac
    10321 aagatcattg gcgaataaac cacccaacga catcaacatc aggcttacgg tacagttacc
    10381 gccaacaaaa gtcctgatgc cattatttaa tccgtcggta atgacgtcct gattgacggg
    10441 gtcaagaatg atgatggcgt catctttcat gcgcagagac gatgctgcgt caatccagta
    10501 accttgccat ccgctttcac gaagctttgg atagatttcg ttggtataat cgccgccctg
    10561 acaggtcaca atgatatcga gggcctttag cgcctccaga tcaaaggcat cctgaagtgt
    10621 gccagtggtt ccgccaaaag acggcgcagc ctggccaagc tgagaagtag aaaagaagac
    10681 agggcgaatg gcgtcgaagt cgcgctcttc aaccatgcgt tgcatgagaa cggagccgac
    10741 cataccgcgc cagccgataa aaccaacatt tttcataagc gttttttcct gcaaagatgt
    10801 gtgctgtata aatgtgccgg tctcctcttg gcacatcttt caccatacaa aaagcagcca
    10861 aagtcgcaag tgaaattaat caatgatagc gaagccatca gtaatgcgac ttatcctgct
    10921 ttgttagcac acagaaagtc cgcggcaatt atcagggaat ttgagttatg aatgaaatca
    10981 tttctgcagc agttttattg atcctgatta tggatccgct cggaaacctg cctattttca
    11041 tgtccgtact gaaacatact gaaccgaaaa gacggcgggc aatcatggtg cgagagttgc
    11101 ttattgctct cctggtgatg ctggtgttcc tgtttgcggg tgagaaaatt ctggcatttc
    11161 tcagcctgcg agcagaaacc gtctccattt ctggcggcat cattctgttt ctaatcgcca
    11221 ttaagatgat tttccccagc gcttcaggaa atagcagcgg gcttccggca ggtgaagagc
    11281 catttatcgt gccgttggca attccgttag tcgccgggcc gactattctc gccacgctga
    11341 tgttgttgtc tcatcagtac ccgaatcaga tgggacatct ggtgattgct ctgctgctgg
    11401 cctggggcgg cacctttgtc atcctgctac agtcttcgct atttttacgt ctgctgggcg
    11461 agaaaggggt gaacgcactt gaacgcctga tgggattgat tctggtgatg atggcaaccc
    11521 agatgttcct cgacggcatt cgaatgtgga tgaaggggta acgaggagag tttttcgaaa
    11581 agaacccggt agcgtcacaa ctaccgggcg aacaaactta actcaacagc tggaacgcaa
    11641 tcatcccaac gatggcacca acagtgccga ggatggtttc catcatggtc caggttttca
    11701 gcgtttcggc ttcggtcgcg ccggtaaatt taccgaacaa ccagaaaccg gcgtcgttaa
    11761 cgtggctgac aacaatcgaa ccaccagcga tacaaatcga cagtgccgcc atttgcgcac
    11821 cggagtagtt cagttgttca atgaccggca tcaccagccc caccgccgtt aaacaggcaa
    11881 cggtggcaga cccctgaatg atgcgcactg cagcggccag cacgaagcag gtgatagcaa
    11941 tcggcaggcc catgccggtt aacgcttcgc ccagtgccgg acctacgcca gagtcaacca
    12001 gcacctgttt gaacacgccg cctgcaccaa tcaccagcag aatgatcccc gccggttgta
    12061 gcgcgtgacc gcaaatctcc atcactttgt cttttggcat gccctgacgc attgccaggc
    12121 cataaatcgc taccagacaa gcaaccagaa tcgcggtaaa tggatgacca ataaactcga
    12181 accattcgta agcagttgat ccttctggca caaaacgagc ggcaatggtt ttcagcccca
    12241 ccagcaccag cggcaacagg atcagcgaca ggctgaatcc gaaggacggc attttgcctt
    12301 cgccgagatg cggttcgctg atgtcgtcag gaatatgcaa ctccacgtaa cggctgatga
    12361 aattacccca cagcggcccg gcaataatca ttcccggaat tgccgcacac agaccaatca
    12421 ggatcatcca gccaaagtcg gcattcatct gcgatgccag caacatcggc gctggtccag
    12481 gcaccagaaa tgccgccgct gccgccacgc ctgcgaataa tgggattacc agcttcacca
    12541 ggttcgtacc ggtgtggcgc gccattgaga aagcaacgct aatcagcaga actatcgcca
    12601 cttcaaagaa cagcggtagc gcacagacca accccgcaag gccgatggca taatgcgcgc
    12661 ggctgtgacc gaaggatttg agcattttga cggcaatctg atcgactgcg ccggtttcat
    12721 gtaagatctt gccaaacata gctcccaggg cgacaaccac cgccaggaag ccgagggggc
    12781 ctcccatccc tttttccatc gtcgctgcga ttttatcgag cggcataccg gaaaaaaggc
    12841 cagcccccat ggacaccacc atcaaagcca ggaaagcgtg catacgcgcc ttcatgacta
    12901 aaaacagcag cagtaaaaca gaccctactg ctgttaaaac aagcgttaat gtagtcacta
    12961 cttatttgcc ttttttaata acctcaatgg tgcttgccac aacaccttcc agcggttgat
    13021 cgatatccac caccagtaca tcggtttcgt ccgcacccgg ctcctgcagc gtttcaaact
    13081 gcgtcaccaa catttgggtt ttaaagaaat ggcctttgcg cgctttcaag cgactttcaa
    13141 tcacatcaaa atcgcctttc aggtagatga aagagagatt cggattacct tcacgcagca
    13201 agtcgcgata gtgctttttc agtgcagaac agacgatcag cgacacttta ttggtgcgca
    13261 gcatagcaaa cgcggcgtcg ttcagcgcct gcaaccaggg tttgcgatcg tcgtcattca
    13321 gcggttcgcc agacgccatt ttttcgatat tgcgccgtgg atggaggaaa tcaccatcaa
    13381 gaaacgcggc atgaagttga tgcgccactt cactggcgac cgcagatttg ccgctgcccg
    13441 atacgcccat caagacgtaa atgtggtgat catggttagt cgtgctcaaa gtggtgcccc
    13501 cacaatacaa gaattaaaaa tgttacgggt aactgttatc ggtaacattg tccagccgga
    13561 caatatcaga agcaatatcc atccgtgcct taagtgtata agtgtgagct acttcaaatt
    13621 tgtaggctta aatagatccg cccggtgaca aggtgaaacc taaatctaac attttcggtg
    13681 tcacagattc gccacgaata cgcgccagca ggcgttcagc gccaatactg cccatccgct
    13741 cacgcggcgt cagcacgctc gctaaccgcg gctccatcac ctggccaatg tcatgaccgt
    13801 ggaaaccggc aatcgccata tcgtcaggaa ccttcaatcc cagacgctga cattcaaacg
    13861 ccgcgccgac cgccaggtca tcgttggtac agaacacgcc atccagctgc ggatattccc
    13921 gccgcgcctg gcgaatcagt tcaataccgg aagagtaaga agaagattgc tcaaccatca
    13981 cgctatacga caccagacct gcatccagca tcgcctgttc gtatcccttc tgtttgatga
    14041 tagtacgttc gtcgagacgc gcgccgagat aggcaatgtg gcaatgcccg cgagcaataa
    14101 tggcggtggt catctggcgt gccgcttcaa agttatcaaa accgacggcg atatcgaggc
    14161 acggcgactg gctgtccatg agttccacca ccgggatccc cgccacttca atcatcttta
    14221 aggtgcgcgg cgtgtgggta cgttcggtga ggatcagtcc gtcgatattc catgagagca
    14281 tggattcgag acgttcttgc tccatttccg gtttataacc gtagtgagcc agcatggtct
    14341 gataaccgtg cgcgtcggtg acgctttcga ttccgcgtaa tacttccgcg aaaacctggt
    14401 tggtgagaga aggtaacagg acgccaatcg cccggctggt ggcgttagag aggatatcgg
    14461 gcgcacgatt gggaatatag cccagttcat caagagcggc ggcaatcttg ccgcgtagag
    14521 cgacggaaac ctgctccggg ttgcgtaaaa aacggctgac cgtcattttg gtcacgccta
    14581 cacggtcagc cacatcctga agtacgggtc ttttcttttt catcgtcctg aaggtacaaa
    14641 agagatagat tctcttagtt taacacggac gcatcagaac cttcccgggg aaaacagtgc
    14701 ttgtttacaa ttattagata tacactaaat caattgcatc gcattgtgct aacgacgcgg
    14761 caaaaccccg gaagcgtgca tcagcacgcg accggagcga gcgaggaagc ctgcaaaaag
    14821 gcaggcttca aagatgccgt tgagttttaa accggcggca gatcgaacag taacacttcg
    14881 ctgtcgctat ccgcatggat ggagattgcc tgctcatccc agattgccag accatcgctg
    14941 gtcgaggctt tcacgccgtt aatggtgaca ttgcctttca ccacctggat ccagacgcgg
    15001 cgttcagcgg caatctgatg caccgactgc tcatctttca gcaacgccca gcggtacagt
    15061 tccatatcct gatgcacttt caatgaacca tctcgcgcat ccggcgagag caccagctgt
    15121 ttgccctgta cggcatcgaa gcgacgctgt tcataacgcg gcgtaatacc gttttcttca
    15181 ggcatgatcc agatctgata cagatgcaga cgctcggtgc tgcttgggtt gtactctgag
    15241 tgacgaatac ccgtacccgc actcataatc tggaactcac ccgccggaac ctgctcttta
    15301 ttgcccatgc tgtcctgatg ctcaacagta ccttccagca cgtaggtcaa aatttccata
    15361 tctttatgcg ggtgagtgcc gaagccctgc cctgcttcaa tcacgtcgtc gttaatcacg
    15421 cgcagcgcgg agaagcccat aaagttcgga tcgtaatagt tggcaaaaga gaaagtatgc
    15481 caggagtcca gccagccatg atttgcatga ccacgttcat ttgctttgcg taagtagatc
    15541 atttgtattc gccccctgaa tgatttcgat gggcttagtg tggacccgat ctgcctggga
    15601 tgatagaggg tgaaaattgc cccctctgtt caaaaaaatt gaactattcg aggggccatc
    15661 aaacttaatt cgcgaaagtc actgtggagg gagaggcttg ctcaaatccg cgttcaagga
    15721 tttccagatt ggtaagaact tcagattcct tgacgtaatt tggcgcaccg tgggtgatgg
    15781 tttgatacaa cgcatcataa acgcgcccgt aatcgcccat ctccggcttc atctcttctc
    15841 tgaccgtcac gccctcgtca ttgacatact ccggcacacc gaccgaatca tccgctgcga
    15901 atcccggttc gcccggcata atattagcct tcaggctggt ttcctgctgg tcgataccgt
    15961 atttaataaa cgaacctttc ttaccgtgaa cgataaattt cggataatcg attttcacca
    16021 gatggctggt tttgacgatg gctttcaggt cgccataaaa cagttgcgct tcaaaggtgt
    16081 cgtcaggatt ggctttatta cgcaggctgc ggatgtcata agcgacgtga tccgggcgac
    16141 cgaacagaga aataatctgg tccatcgtat gcacaccaag gccataaaac gcgccatcct
    16201 gcggcagccc aggtttggtt tctgccaccg ggcggtaata gtcaaaatgg ctttccactt
    16261 caacaatctc tcccaacttg ccactttcaa tcgctttttt cgctgtcagg aagcaggagt
    16321 caaagcgacg attctgatac ggcgtgacgc tcagcccttt gcttttcgcc aacgcaaaca
    16381 gctccttcgc ctgggcaagc gtcggggtga acggtttttc gaccagcaca tttttcccgg
    16441 cttccagcgc gcgtttcgca tactcgaaat ggctgtccgc gtgggtgcag acaacaacca
    16501 gcttaacatc gggatcgttt agtacttcgt cgagatcgct gatgaaatgg atatgggaat
    16561 aaatgggagc ctgttcttcc ggcttcgcat ggcgacgaaa aatatgcgcg acatgccagc
    16621 tatccttgcg gttaagtaca tacggcagat ggtaacgggt ggtgcttttg ccgaagccaa
    16681 taaaggcgca gttgatgacc atgatttcgt cctttttaag gtggttattt acaccttagc
    16741 gcaaagcgga cgtggttcct actggagtgc gcataacgaa cacaagcact cccgtggata
    16801 aattgagaac gaaagatcaa aaaaaagcca gcacccggct ggctaagtaa tactggaagc
    16861 aatgtgagca atgtcgtgct ttcaggttct ccgcgagggt cttcctgatc gcgagacaat
    16921 aataatcatt ctcattcgca cttgtccaac actttttgca aaaaaatgca tttgactcgc
    16981 atttgaaagt caatgatgtt gaaagggaca tttaccccaa agaggacaaa ggaatgagtg
    17041 agatagtaat acgccacgca gaaacacggg attacgaggc catcaggcag attcacgccc
    17101 agccggaggt gtattgcaac acactacagg tgcctcatcc ttccgatcat atgtggcagg
    17161 agcgactcgc cgatcgtccc ggcatcaagc aactcgtcgc ctgtattgat ggagacgtcg
    17221 tgggccatct caccattgac gtgcaacagc gcccacgccg cagtcatgtt gccgattttg
    17281 gtatctgtgt cgactctcgt tggaagaacc gcggcgtcgc cagcgccctg atgcgagaga
    17341 tgattgaaat gtgcgacaac tggttgcggg tagatcgcat tgaactaacc gtgtttgtcg
    17401 ataacgcccc ggcaattaag gtctataaaa aatacggctt tgaaattgaa gggactggta
    17461 agaagtacgc attgcgtaat ggtgaatatg tcgatgcata ttatatggcg cgggtgaagt
    17521 aagatagtgc cctttttctg agatggaaaa agggtgtcat tcaaaatcga cataccttcc
    17581 tttaaggtat ttatttaccc aatacatata ttgagattta actcataatt acttcctaaa
    17641 gtgtaatatt ttatttttta atatatacgc ctacaatttc ctggagtaaa taaataacaa
    17701 ttaacaagca taatattgcc attgataaaa tagcatgcca taaaaggact tttcagggat
    17761 gagtaatatt gtttacctga cagtaacggg agaacaacaa ggaagcatct ccgcaggttg
    17821 tgggacttct gagtctacag gtaatcgttg gcagagcggg catgaggatg aaatatttac
    17881 attctcactc ttaaataata ttaataatac ggggcttggt tcacagttcc atggtataac
    17941 attttgtaaa ttaattgata aaagcactcc attatttatt aattccatta acaataatga
    18001 acaattattt atgggatttg acttctatcg aataaataga tttggtagat tggaaaagta
    18061 ttattatata caactaagag gcgctttttt atcggctatt catcaccaga tcattgaaaa
    18121 ccaactggat acagaaacaa taactattag ttatgaattt atcctctgtc aacatcttat
    18181 cgcaaatacc gagttcagct atttggcact ccctgaaaat tataaccgat tgtttttacc
    18241 aaattcaaaa aaccaaacaa ataatcgttt caaaacgtta aacagcaaag ctattggcag
    18301 gctacttgct gctggtggcg tatacaatgg gaacattgaa ggattcagag atactgcgga
    18361 aaaactgggt ggagatgcaa taaaaggcta tgatcaaata ctaaatgaaa aaacagcggg
    18421 catagcgata gcaacagcat ctattctttt aacaaagcgt tctaatgttg atacatatac
    18481 agaaataaat agttacttag gcaaacttag aggtcaacaa aaacttcttg atggtataga
    18541 cataatagaa ataatataca ttaagagacc ttcaaaagac ttagctaact tacgaaagga
    18601 gtttaataaa actgtaagaa aaaattttct tatcaaactt gcaaaaacct ccgaagcatc
    18661 tggaagattc aacgccgcag accttttaag aatgagaaag ggcaatgttc ctctaaatta
    18721 taatgttcac cataaactat ctctagatga tggtggtact aatgatttcg aaaatttagt
    18781 attaatcgaa aacgaaccat atcataaagt ttttactaac atgcaatcac gaatagctaa
    18841 gggaatatta gtaggtgaaa gcaaaatcac tccctgggcc attccatctg gctcaattta
    18901 tcctcccatg aaaaatgtaa tgaacgcatc ccacacaatt aaacacggag cagtatgatg
    18961 gttaaaaggg tgaaactggc aggtgtggag cctcgcagat ttccggcatc atagtgccca
    19021 atacgggatg cataaagctc cctcagactg gaaactccac aaatgaaata tacaccggtt
    19081 ggcgttg
//
LOCUS       DAJVUP010000077        18497 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.077, whole genome shotgun sequence.
ACCESSION   DAJVUP010000077 DAJVUP010000000
VERSION     DAJVUP010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18497
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.077"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..893
                     /locus_tag="OQQ75_002385"
     CDS             <1..893
                     /locus_tag="OQQ75_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1976682.1"
                     /translation="WFNIKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFIT
                     IGVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNARRDPLSFAEWRSLFRNRTM
                     WGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMTAIPFLFGAAGMLVNGYVT
                     DWLVKGGMAPIKSRKICIIAGMFCSAAFTLIVPQATTSMTAVLLIGMALFCIHFAGTS
                     CRGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTA
                     AGALAYIFLVRQPINDPRKD"
     gene            complement(942..2597)
                     /gene="tsr"
                     /locus_tag="OQQ75_002386"
     CDS             complement(942..2597)
                     /gene="tsr"
                     /locus_tag="OQQ75_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HCS1976683.1"
                     /translation="MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQ
                     TIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAE
                     KNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ
                     DGFEKQYVAYMEQNDRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASL
                     VAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANA
                     IYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS
                     ETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ
                     GRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVT
                     RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRL
                     TEAVAVFRIQQQQRETSAVVKTVTPAAPRKMAVADSEENWETF"
     gene            complement(2716..3162)
                     /gene="hpaR"
                     /locus_tag="OQQ75_002387"
     CDS             complement(2716..3162)
                     /gene="hpaR"
                     /locus_tag="OQQ75_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoprotocatechuate degradation operon regulator
                     HpaR"
                     /protein_id="HCS1976684.1"
                     /translation="MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESP
                     SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRA
                     QTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEAIPGDNE"
     gene            3434..4723
                     /locus_tag="OQQ75_002388"
     CDS             3434..4723
                     /locus_tag="OQQ75_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate degradation bifunctional
                     isomerase/decarboxylase"
                     /protein_id="HCS1976685.1"
                     /translation="MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNT
                     VIGCGEPIPFPQGEKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEESF
                     YRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSAL
                     SEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLENPVVDEREVTTRKSFPTQ
                     PHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYE
                     AELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENCYRPNLRVKSRDGLTPML
                     STIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIA
                     TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEDTAK"
     gene            4720..6186
                     /gene="hpaE"
                     /locus_tag="OQQ75_002389"
     CDS             4720..6186
                     /gene="hpaE"
                     /locus_tag="OQQ75_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1976686.1"
                     /translation="MKKVNHWINGKNVAGNDYFQTTNPATGEVLADVASGGEAEINQA
                     VAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIP
                     RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAP
                     CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRDHDVR
                     AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE
                     RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPNDPNTQVGALISQQHWEKVSGYIR
                     LGIEEGATLLAGGPDKPSDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP
                     FKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG
                     VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV"
     gene            6188..7039
                     /gene="hpaD"
                     /locus_tag="OQQ75_002390"
     CDS             6188..7039
                     /gene="hpaD"
                     /locus_tag="OQQ75_002390"
                     /EC_number="1.13.11.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase"
                     /protein_id="HCS1976687.1"
                     /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCR
                     EMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLI
                     ADEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
                     GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWRE
                     GQFKEFCNMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVN
                     AVFPLPA"
     gene            7049..7429
                     /locus_tag="OQQ75_002391"
     CDS             7049..7429
                     /locus_tag="OQQ75_002391"
                     /EC_number="5.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HCS1976688.1"
                     /translation="MPHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRV
                     HWVDTWQMADGQRDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLA
                     LSFEIEELHPTLNFKQNNVHALFK"
     gene            7540..8343
                     /gene="hpaH"
                     /locus_tag="OQQ75_002392"
     CDS             7540..8343
                     /gene="hpaH"
                     /locus_tag="OQQ75_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710089.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HCS1976689.1"
                     /translation="MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQR
                     EWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIV
                     PRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFD
                     TISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWL
                     ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRFV"
     gene            8354..9142
                     /gene="hpaI"
                     /locus_tag="OQQ75_002393"
     CDS             8354..9142
                     /gene="hpaI"
                     /locus_tag="OQQ75_002393"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HCS1976690.1"
                     /translation="MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLSDGE
                     HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAR
                     EAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQI
                     LDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGILIANEQL
                     AKRYLELGALFVAVGVDTTLLARAAEALAARFGAQATAVKPGVY"
     gene            9317..10693
                     /gene="hpaX"
                     /locus_tag="OQQ75_002394"
     CDS             9317..10693
                     /gene="hpaX"
                     /locus_tag="OQQ75_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
                     /protein_id="HCS1976691.1"
                     /translation="MSDTSPAIPESIDPANQHKALTAGQQAVIKKLFRRLIVFLFVLF
                     IFSFLDRINIGFAGLTMGRDLGLSATMFGLATTLFYAAYVIFGIPSNIMLSIVGARRW
                     IATIMVLWGIASTATMFATGPTSLYVLRILVGITEAGFLPGILLYLTFWFPAYFRARA
                     NALFMVAMPVTTALGSIVSGYILSLDGVMALKGWQWLFLLEGFPSVLLGVMVWFWLDD
                     SPDKAKWLTKEDKKCLQEMMDNDRLTLVQPEGAISHHAMQQRSMWREIFTPVVMMYTL
                     AYFCLTNTLSAISIWTPQILQSFNQGSSNITIGLLAAVPQICTILGMVYWSRHSDRRQ
                     ERRHHTALPYLFAAAGWLLASATDHNMIQMLGIIMASTGSFSAMAIFWTTPDQSISLR
                     ARAIGIAVINATGNIGSALSPFMIGWLKDLTGSFNSGLWFVAALLVIGAGIIWAIPMQ
                     SSRPRATP"
     gene            10703..11589
                     /gene="hpaA"
                     /locus_tag="OQQ75_002395"
                     /pseudo
     CDS             10703..11589
                     /gene="hpaA"
                     /locus_tag="OQQ75_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate catabolism regulatory
                     protein HpaA"
     gene            11840..13402
                     /gene="hpaB"
                     /locus_tag="OQQ75_002396"
     CDS             11840..13402
                     /gene="hpaB"
                     /locus_tag="OQQ75_002396"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     oxygenase component"
                     /protein_id="HCS1976692.1"
                     /translation="MKPEDFRASTQRPFTGEEYLKSLQDGREIYIYGERVKDVTTHPA
                     FRNAAASVAQLYDALHKPEMQDSLCWNTDTGSGGYTHKFFRVAKSANDLRQQRDAIAE
                     WSRLSYGWMGRTPDYKAAFGCALGANPGFYGQFEQNARNWYTRIQETGLYFNHAIVNP
                     PIDRHLPTDKVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP
                     DFALMFVAPMDADGVKLISRASYEMVAGATGSPYDYPLSSRFDENDAILVMDNVLIPW
                     ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTLEFRG
                     VQADLGEVVAWRNTFWALSDSMCSEATPWVNGAYLPDHAALQTYRVLAPMAYAKIKNI
                     IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVQHIKILKLMWDAIGSEF
                     GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVPHLHN
                     NDDINMLDKLLK"
     gene            13420..13932
                     /locus_tag="OQQ75_002397"
     CDS             13420..13932
                     /locus_tag="OQQ75_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase reductase
                     subunit"
                     /protein_id="HCS1976693.1"
                     /translation="MQLDEQRLRFRDAMASLSAAVNIITTEGDAGQCGITATAVCSVT
                     DTPPSLMVCINANSAMNPVFQGNGKLCVNVLNHEQELMARHFAGMTGMAMEERFSLSC
                     RQKGPLAQPVLKGSLASLEGEIRDVQAIGTHLVYLVEIKNIILSAEGHGLIYFKRRFH
                     PVMLEMEAAI"
     gene            14325..16475
                     /gene="btsT"
                     /locus_tag="OQQ75_002398"
     CDS             14325..16475
                     /gene="btsT"
                     /locus_tag="OQQ75_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313340.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate/proton symporter BtsT"
                     /protein_id="HCS1976694.1"
                     /translation="MDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASV
                     SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG
                     PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPV
                     PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG
                     RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL
                     ILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFIT
                     IACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLY
                     FAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQILQT
                     AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG
                     TRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW
                     PLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKLFSTNP
                     QMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYG
                     FKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH"
     gene            16606..16809
                     /locus_tag="OQQ75_002399"
     CDS             16606..16809
                     /locus_tag="OQQ75_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1976695.1"
                     /translation="MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSY
                     EEFFRERQNARYGGDGKGGMRCC"
     gene            16820..17776
                     /gene="yjiA"
                     /locus_tag="OQQ75_002400"
     CDS             16820..17776
                     /gene="yjiA"
                     /locus_tag="OQQ75_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313338.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HCS1976696.1"
                     /translation="MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS
                     VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMA
                     DPGPIIQTFFSHEILCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
                     DVAGEAEKLRERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIA
                     DKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV
                     QRLYSADWDRPWGDEKPHSTMVFIGIQLPEDEIRAAFAGLKK"
     gene            complement(17878..>18497)
                     /locus_tag="OQQ75_002401"
     CDS             complement(17878..>18497)
                     /locus_tag="OQQ75_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HCS1976697.1"
                     /translation="AILNVWLTSMLKRTVVAAVPMPFDKWYSASGYETTQDGPTGSLN
                     ISVGAKILYEAVQGDKSPIPQAVDLFAGKPQQEVVLAALEDTWETLSKRYGNNVSNWK
                     TPAMALTFRANNFFDVPQAAAEETRHQAEYQNRGTENDMIVFSPTTSDRPVLAWDVVA
                     PGQSGFIAPDGTVDQHYEDQLKMYENFGRKSLWLTKQDVEAHKES"
BASE COUNT         4227 a         5121 c         4935 g         4214 t
ORIGIN      
        1 actggttcaa catcaaagag cgcggacgcc cgatgggctt cttcaacgca gcttctacca
       61 ttggcgttgc cgtaagccca ccgattctgg cggcgatgat gctggtgatg ggctggcgcg
      121 ggatgtttat taccattggt gtactgggga tttttctcgc catcggctgg tatatgctct
      181 atcgcaaccg cgagcacgta gaactgactg ccgttgagca agcttatctc aatgcaggta
      241 gcgtcaatgc ccgccgagat ccgctcagtt ttgccgaatg gcgcagcctg ttccgtaacc
      301 gtacaatgtg gggaatgatg ctcggattca gtggcatcaa ctacactgcg tggctgtatc
      361 tggcctggct tcctggttac ctgcaaacag cctataacct ggatttaaaa agcacagggt
      421 tgatgacggc tatccctttc ctgtttgggg ctgccgggat gctggtcaac ggttacgtta
      481 ccgactggct ggtcaaaggg ggaatggctc cgattaaaag ccgtaagatc tgcattattg
      541 ccgggatgtt ctgttctgcc gcctttacgc tgatagtacc acaagcgaca acatccatga
      601 cggcggttct gctgattggc atggcactgt tctgtattca ctttgccgga acatcctgcc
      661 ggggcttgat ccacgtcgca gttgcttctc gcatgactgc gtcggtgggc agtatccaga
      721 actttgccag cttcatctgc gcctcttttg cgccgatcat tactggtttt attgttgata
      781 ccacccactc attccgtctg gcactaatca tctgcggttg cgtcaccgca gcgggggcac
      841 tggcgtacat cttcctggtt cgtcagccga tcaacgaccc acgtaaagat taatctcctt
      901 atgcccgata acattttgct tatcgggcat tttcatggcg attaaaatgt ttcccagttc
      961 tcctcgctat ctgccacggc cattttacgc ggcgcagctg gcgtcacggt ttttaccaca
     1021 gccgatgttt cacgctgctg ttgctgaatc cggaacactg ccactgcttc ggtcaggcga
     1081 ctggcctgct cttccagcgc ggcggcggca gcggcagact cttccaccag cgcggcgttc
     1141 tgttgagtta cccggtccat ctcagcaacc gctaagccaa cctgatcgat accacggctc
     1201 tgctcatcag aagcagaagc aatttcgccc ataatgtccg tcacgcgggt cacggcgctg
     1261 acaatctccg ccattgtttc cccggcgctt tcgaccagcg tagagccaac atccactttc
     1321 cccaccgagt cttcaatcag gcttttaatt tcacgagccg cctgggcgct gcgctgggcc
     1381 agattacgca cttctcccgc gaccaccgca aaaccgcgcc cttgctcacc cgcacgcgca
     1441 gcctcaaccg ccgcgttcaa agccagaata ttggtctgga aggcaatgcc gtcaattacg
     1501 ctgataatat cggcgatttt ctgcgaactg gtggagatat cgcgcatagt ctgcaccacg
     1561 ttatctacca ctttgccgcc gcgttgcgcc gtttcagaag cacttaacgc cagatggctg
     1621 gcctggcgcg cattttcggc gttctgcttc accgttgcgg tcagttgctc catgctggct
     1681 gccgtctctt ccagcgaagc ggcctgttgc tcggtgcgcg aagagagatc gttattgccg
     1741 gtggcgattt cgctggcacc gctatagatg gcattggccc cgttgcgcac atcaccgacg
     1801 gtacgcatca gctctccctg catatggcgc aaactctctg ccagttgccc catctcatta
     1861 gagccatcca cctcaatcgg tttcaccaga tcgccgcctg caatatgacg aatgctgtca
     1921 atcaggcgat tcattggcgc taccagcgag gctttaatac cgaaccagac ggcgaagatg
     1981 accgccagta cgacgatcat cacgcccacc agaatccaca tcgcctggct gtaggaggca
     2041 ttgttatcgc tgacggcgat atcatagagc cgatcgtttt gctccatgta agccacatac
     2101 tgcttctcga aaccgtcctg atatccctgg gtcggctgat caaagaactc gttgattttg
     2161 cctgcaccta acagttggat cagctccgcc agcgcattgt gataaatatc gtaattacgt
     2221 ttgatctctg ccgctgcggc ggtgctctga cgcgggtcac gcggcaacgc ttcgtaatcc
     2281 gcccagtttt tttccgcctg tttcagcgaa atactggcac tctgcatcag ctcagcaacg
     2341 gttgaaccgc taccaatatt attctgatcc atcatgtagc ggatacccgc gcggttgagg
     2401 gtgttacgcg tctgcaacaa cgcgacccag ctgccattca gcgtggattg ctgctggcga
     2461 atggtttgta aaacagtgaa attttctttg tcattcttta aggcattaaa gaacagaccg
     2521 cctgatgtca gttgtaaaag gccaaaaacg gccaaaacca gcagtaagct ggtcacgatc
     2581 ttgatacgtt ttaacatggt ttctctttcc tgtggaccga tgcaagattt tcggcttgga
     2641 aagcaaaaac tttatgaaaa ggtgtaaccc gccatccatg gaaaaaccag gcgctggtta
     2701 tcagatacta aaaagttatt cattatcgcc cgggatggct tcttgtcggg aattgcccag
     2761 agcaataaat tcctctaaca gatgggttaa ctgttgcatt ttctcggcag taaactgagc
     2821 ttcaatctgc cgataggctt cttcaatctg tgtctgagcg cggttataca gcgcctgccc
     2881 ctctttggtt agcgagatat agagcttccg ctgatcattg atcggcttta atcgcaacac
     2941 taaaccgtcg cgttccatcc gcgtgagaat cccggtcagg cttgggcgca aaatgcaggc
     3001 gcgatacgcc agatcgtgaa aatccattga tgggctttcc gccagaatac gcacgatgcg
     3061 ccactgttgc tcagtcaaat tatgccgttt aacgattggg cgaaaataac tcatcgccgc
     3121 ttctcgcgcc tggagcaacg caatggttag tgagtcgtgc attatctttc ccctgaaaaa
     3181 ttcaaaatca ttaatataga aacagttaat cgtcacgtta ccgggactgc gctgcccctg
     3241 caattcctga ttttatcaaa attgatgata ttttattaac ttactgatat ttaatatttt
     3301 attatcttta aatgtaaata gtttgttaat tagatcacat ttacatcact tacttttgcc
     3361 aaactacgca atcgggaata aaagcaatca ttaacatatt aatgattaag ataatcgaat
     3421 ccgaggagtg gtaatgaaag gcactatctt cgccgtagcg ttgaaccatc gcagccaact
     3481 tgatgcatgg caggaagcgt tccagcaatc cccctacaaa gccccgccta aaactgcggt
     3541 ctggtttatt aaaccgcgca atacggtgat tggttgcggt gaaccgattc cctttccaca
     3601 gggtgaaaag gtactgagcg gtgcgactgt tgcgctgatt gtgggaaaaa cggcgacgaa
     3661 agtacgtgaa gaagatgcgg cagagtacat cgccggatat gcgctggcta acgacgtcag
     3721 cctgccggaa gagagctttt accgcccggc aatcaaagca aaatgtcgtg atggattctg
     3781 ccccattggc gaaaccgtgg ctctcagcaa tgtcgataat ctgaccatct ataccgagat
     3841 caacgggcgt cctgccgatc actggaatac cgccgattta caacgtaacg ccgcgcagtt
     3901 gctgagcgcc ctgagcgaat ttgccacgct gaatccaggc gacgccattc tgctcggcac
     3961 gccacaggcg cgcgtggaaa tacagccagg cgatcgcgtt cgtgttctcg cagaaggttt
     4021 cccgccgctg gaaaatccgg tagtggacga acgtgaagtg accacgcgca agagcttccc
     4081 aacgcagcca cacccgcacg gcacgctgtt tgccctcggc ctgaactacg ccgaccacgc
     4141 cagcgaactg gaatttaagc caccggaaga accgctggta ttcctgaaag cgccaaatac
     4201 cctcactggc gataaccaga cctccgtgcg tccaaacaat attgaataca tgcactatga
     4261 agcggagctg gtggtagtta ttggcaaaca ggcgcgtaac gtcagcgaag ccgatgccat
     4321 ggattatgtc gcgggctaca ccgtgtgtaa cgactacgcc attcgtgact atctggaaaa
     4381 ctgctaccgc cctaacctgc gggtaaaaag ccgcgacgga ctgacgccga tgctttcaac
     4441 catcgtgccg aaagaggcga tcccggaccc gcataatctg acccttcgca ccttcgtcaa
     4501 cggcgagtta cgccagcaag gcaccaccgc cgatctgatc ttcagcgtgc ccttcctgat
     4561 cgcctactta agtgaattta tgaccctgaa tccgggcgac atgatcgcca ccggcacacc
     4621 caaaggctta tctgacgtgg tgcctggcga tgaagtagtg gtggaagtag aaggcgtggg
     4681 ccgcctggtg aaccgaattg tgagtgagga tacagcgaaa tgaaaaaagt aaatcattgg
     4741 atcaacggca aaaatgttgc aggtaacgac tacttccaga ccaccaatcc ggcaacgggt
     4801 gaagtgctgg cggatgtggc ctctggcggt gaagcggaga tcaatcaggc ggtagcggca
     4861 gcgaaagagg cgttcccgaa atgggccaat ctgccgatga aagagcgtgc gcgcctgatg
     4921 cgccgtctgg gcgatctgat cgaccagaac gtgccagaga tcgccgcgat ggaaaccgcg
     4981 gacaccggcc tgccgatcca tcagaccaaa aatgtgttga tcccacgcgc ttcccacaac
     5041 tttgaatttt tcgcggaagt ctgccagcag atgaacggca agacctatcc ggttgacgac
     5101 aagatgctca actacacgct ggtgcagccg gtgggcgttt gtgcgctggt atcgccgtgg
     5161 aacgtaccgt ttatgaccgc cacatggaag gtcgcgccgt gtctggcgct gggcaatacc
     5221 gcggtactga aaatgtcgga actctccccg ctgaccgctg accgcctggg tgagctggcg
     5281 ctggaagccg gtattccggc aggcgtgctg aacgtggtac agggctacgg cgcaaccgca
     5341 ggggatgcgc tggttcgtga tcatgacgta cgtgccgtgt cgttcaccgg cggtacggcc
     5401 accgggcgca acatcatgaa aaacgccggg ctgaaaaaat actccatgga actgggcggt
     5461 aaatcgccgg tgctgatttt tgaagatgcc gatattgaac gcgcgctgga cgccgccctg
     5521 ttcaccatct tctcgatcaa cggcgaacgc tgcaccgccg gttcacgcat ctttattcag
     5581 caaagcatct acccggaatt cgttaaacgc tttgccgaac gcgccaaccg tctgcgcgtg
     5641 ggcgatccga acgatccgaa tacccaggtt ggcgcgctta tcagccagca gcactgggaa
     5701 aaagtctccg gctatatccg tctcggcatt gaagaaggcg ccaccctgct ggcgggcggc
     5761 ccggataaac cgtctgacct gcctgcacac ctgaaaggcg gcaacttcct gcgcccaacg
     5821 gtgctggcag acgttgataa ccgtatgcga gtcgcccaag aagagatttt cgggccggtc
     5881 gcctgcctgc tgccgtttaa agacgaagct gaaggcttac gcctggcaaa cgacgtggag
     5941 tacggcctcg cgtcgtacat ctggacacag gatgtcagca aagtgttacg cctggcgcgt
     6001 ggcattgaag ctggcatggt gttcgtcaac acccagaacg tgcgtgacct gcgccagcca
     6061 tttggcggcg taaaagcctc cggcaccggg cgtgaaggcg gtgagtacag cttcgaagtg
     6121 ttcgcggaaa tgaagaacgt ctgcatttcc atgggcgacc atccaattcc gaaatgggga
     6181 gtctgatatg ggtaagttag cgttagccgc caagatcacg cacgtaccgt cgatgtatct
     6241 ctctgaactg ccagggaaaa accacggttg ccgccagggc gcgatcgacg ggcataaaga
     6301 gatcagcaag cgttgccggg aaatgggcgt cgataccatt atcgttttcg atacccactg
     6361 gctggtcaac agtgcttatc acatcaactg tgcagaccat tttgaaggcg tctacaccag
     6421 caacgagctg ccgcatttta tccgcgatat gacctacaac tacgagggca acccggagtt
     6481 ggggcagctt attgccgatg aagccttaaa gctcggcgtg cgggcaaaag cgcacaacat
     6541 tcccagcctg aaactggaat acggcacgct ggtgccgatg cgctacatga atgaagacaa
     6601 gcacttcaaa gtggtctcca tttcggcttt ctgcacggtt cacgattttg ccgacagccg
     6661 caagctgggc gaagcgattc tgaaagcgat cgaacagtac gacggcaccg tggcggtcct
     6721 tgccagcggt tcgttatcgc accgctttat tgacgatcag cgtgcagaag aagggatgaa
     6781 cagctacacc cgcgagttcg accgccagat ggacgagcgc gtggtgaagt tgtggcgcga
     6841 aggccagttc aaagagttct gcaatatgct gccggagtac gccgactact gctacggcga
     6901 aggcaatatg cacgacacgg tgatgctgct ggggatgctc ggctgggata aatacgacgg
     6961 caaggtggag tttatcaccg agctattccc aagctctggc accggtcagg ttaacgctgt
     7021 tttcccgctt cccgcgtaag gacgttttat gccgcacttt atcgttgaat gcagtgacaa
     7081 catccgcgaa gaagccgacc tgccggggtt gttcgccaaa gtgaatccga cgctggcagc
     7141 cacgggtatt tttccgctgg cgggtattcg cagccgcgtg cattgggtcg atacctggca
     7201 gatggccgac gggcagcgtg attatgcctt cgtgcatatg acgttgaaaa tcggcgcagg
     7261 tcgcagcctg gaaagccgtc agcaggcggg tgaaatgctg tttgaactga ttaaaacgca
     7321 cttcgccgcc ctgatggaga gccgcctgct ggcgttgtcg tttgagattg aagagctgca
     7381 tccgacgctg aattttaaac aaaacaacgt gcacgcattg tttaagtagc gcgcagattg
     7441 cccggtggcg ctgcgcttac cgggcctaca aaaccccaaa ccgtacaccg taggccggat
     7501 aaggcgcagc cgcatccggc aatgccacag gatatcgcta tgttcgataa acacacccac
     7561 accctgatcg cccagcgtct ggatcaggca gaaaaacagc gcgaacagat ccgcgcgatc
     7621 tcgctggatt acccagagat caccatcgaa gacgcttacg cggtgcagcg cgaatgggtt
     7681 cgcctgaaaa tcgccgaagg ccgtacgctg aaaggccaca aaatcggtct gacctcaaaa
     7741 gcaatgcagg ccagctcgca gatcagcgaa ccagattacg gtgccctgct ggatgacatg
     7801 ttcttccacg atggcagcga tatcccgacc gatcgcttta tcgtgccgcg cattgaagtg
     7861 gagctggctt tcgtgctggc aaaaccgctg cgtgggccaa actgcacgct gttcgacgtc
     7921 tacaacgcca cggactacgt gatcccggcg ctggagctga tcgacgctcg ctgccacaac
     7981 atcgatccgg aaacccagcg cccgcgcaaa gtgttcgaca ccatttctga taacgccgcc
     8041 aacgccgggg tgatcctcgg tggtcgtccg atcaaaccag acgaactgga tctgcgttgg
     8101 atctccgccc tgatgtatcg caatggcgtg attgaagaaa ccggcgtcgc cgctggcgtg
     8161 ctgaatcatc cggcaaacgg cgtggcctgg ctggcgaaca aactcgcacc gtatgacgta
     8221 caactggaag ccgggcaaat cattctcggt ggttcgttca cccgcccggt tccggcgcgt
     8281 aagggcgaca ccttccacgt cgattacggc aacatgggtt ccattagctg ccgctttgtt
     8341 taaggagaga acgatggaaa acagctttaa agcggcgctg aaagcaggcc gtccgcagat
     8401 cggattatgg ctggggctga gtagcagcta cagcgcagag ttactggccg gagcaggatt
     8461 cgactggttg ttgagcgacg gtgagcacgc gccgaataac gtgcaaaccg tgctcaccca
     8521 gctacaggcg attgcgccct accccagcca gccggtagta cgtccgtcgt ggaacgatcc
     8581 ggtgcaaatc aaacaactgc tggacgtcgg cacacaaacc ttgctggtgc cgatggtaca
     8641 aaacgctgac gaagcccgtg aagcggtacg cgccacccgt tatccccccg ccggtattcg
     8701 cggtgtgggc agtgcgctgg cccgcgcctc gcgctggaat cgtattcctg attacctgca
     8761 aaaagccaac gatcaaatgt gcgtgctggt gcagatcgaa acgcgtgagg caatgaagaa
     8821 cttaccgcag attctggacg tggaaggcgt cgacggcgtg tttatcggcc cggcggatct
     8881 gagcgccgat atgggttatg ccggtaatcc gcagcacccg gaagtacagg ccgccattga
     8941 gcaggcgatc gtgcagatcc gtgaatcggg caaagcgccg gggatcctga tcgccaatga
     9001 gcaactggca aaacgctatc tggaactggg cgcgctgttt gtcgccgtcg gcgttgacac
     9061 caccctgctc gcccgcgccg ctgaagcgct ggcagcacgg tttggtgcgc aggccaccgc
     9121 cgtgaagccc ggcgtgtatt aatgccggat gcgctgcact tatccggcct acactcgcac
     9181 caaaccgtag gccggataag gcgtttacgc cgcatccggc aaaaagccgt accaaatcgc
     9241 ggaccggata aggcgttacg ccgcatccgc cataaacctt gtcgtaccct acaaaaatcc
     9301 cattagagga agaaaaatga gcgacacctc acctgccata ccggagagta tcgatccggc
     9361 gaatcagcat aaagcgctga ctgccggaca acaggcggtt attaagaagc tatttcgccg
     9421 cctgatcgtc tttctgttcg tgctgtttat cttctcgttc cttgatcgca tcaacatcgg
     9481 ctttgccgga ctcacgatgg gacgcgacct cggtctgagc gccaccatgt ttggcctcgc
     9541 taccaccctg ttctatgccg cttatgtcat cttcggcatt cccagcaaca ttatgctgag
     9601 tattgtcggt gcgcggcgct ggatcgccac catcatggtg ctctggggca tcgcctctac
     9661 tgccaccatg tttgccactg gccccaccag cttgtacgta ctgcgtatac tggttggcat
     9721 taccgaagcc ggctttctgc ctggtattct gctgtattta accttctggt ttccggccta
     9781 tttccgcgcc cgtgccaacg ccttgtttat ggtagcaatg ccggtaacga cagcgttggg
     9841 ctcgatcgtt tccggctaca ttttgtcgct ggatggcgtc atggcattaa aaggctggca
     9901 gtggctgttt ttgctggaag gcttcccgtc ggtattactc ggcgtcatgg tgtggttctg
     9961 gcttgatgac tcaccggaca aagctaagtg gctgacgaaa gaagacaaaa aatgcctgca
    10021 agagatgatg gataacgatc gtctgacgct ggttcagcca gagggagcca tcagccacca
    10081 cgccatgcaa caacgcagta tgtggcggga gatcttcact ccggtggtga tgatgtatac
    10141 cctggcgtat ttctgcctga ccaacacact tagtgcgatc agcatctgga caccgcagat
    10201 cctgcaaagt tttaatcagg gcagcagtaa tatcaccatc ggcctgctgg ccgccgtacc
    10261 gcagatttgt accattctcg ggatggtcta ctggagccgt cactcagatc gccgccagga
    10321 acgaaggcat cacaccgccc ttccttattt gttcgctgcc gcaggttggt tactggcttc
    10381 ggcaactgat cacaacatga tccagatgct ggggatcatt atggcttcga ccggatcatt
    10441 cagcgcaatg gcgattttct ggacaacacc ggatcagtcc atcagcctgc gggcacgagc
    10501 gatcggtatt gcggtgatca acgccactgg caacattggt tcagcgttaa gtccgtttat
    10561 gatcggctgg ttgaaagatt tgaccggcag ctttaacagt ggattgtggt ttgttgccgc
    10621 gctgctggtg attggtgcgg ggattatctg ggcgattcca atgcagtcct cccgtccgcg
    10681 agcgaccccg taaggaacga cgatgtgtga ccgtcagatt gccaatattg atatcagcaa
    10741 agagtacgat gaaagcctgg gcacggacga tgtgcattat cagtcgttcg cccgcatggc
    10801 ggcatttttt ggccgccata tgctgccaca tcgccacgaa cagtactttc agatgcattt
    10861 cctcaatagc ggacagattg agctacagct tgacgatcat cgctactcgg tggaagcgcc
    10921 cctgtttgtc ctgacgccgc cgtcagtacc tcatgcgttt attacggagt ctgacgccga
    10981 cggtcatgtg ttgacggtac gggaagatct gatctggccc ctgctggaag ttctttatcc
    11041 gggcactcgg gaaaccttcg gcctgccggg ggcctgtcac tggcagataa acccgacgaa
    11101 ctggcggcgc tggaacacta ttggcaactg atagagcggg aatcggtgga acaactgcct
    11161 ggacgggaac acaccctgac gttactggca caggcagtgt tcaccctact gctgcgtaac
    11221 gcaaaactcg acgaccatgc cgccagcggg atgcgcggag aattaaaact gttccagcgt
    11281 tttaatatgc tgattgaaag ccattttcat cagcactgga cagtaccgga ttacgctaac
    11341 gaactgcata tcaccgaatc acgactcacg gacatctgcc gtcgctttgc caaccgtccg
    11401 ccaaaacggt tgattttcga caggcagctg cgagaagcca agcggctgct gctgttttct
    11461 gataacgccg tgaacaatat tgcctggcaa ctcggtttta aggatccggc ttattttgcg
    11521 cgctttttta atcgcttagt cggttgctcg cccagtgctt atcgcgccaa aaaagtacct
    11581 gtgacgtgaa aatcccttag ccttaacggg aaaccaggca ccacctgcta ttcccctttc
    11641 tccgcctaga gcaaggggat ttagtaacgt caaaaatcgc taaaagcgac ctcgatcaca
    11701 aaaccgtacc cgacctgaaa agtaccagcc attgtcccaa aagtctcttc ccgtaatcgc
    11761 ccctgcaagc tttaattgaa taacaaaaac aacacacaaa attaacaatc gtattccgat
    11821 taatactgta gaggtcgaca tgaaaccaga agatttccgc gccagtaccc aacgtccgtt
    11881 caccggggaa gagtatctga aaagcctgca ggatggtcgc gagatctata tctatggcga
    11941 gcgagtgaaa gacgtcacta ctcatccggc atttcgtaat gcggcagcgt ctgttgccca
    12001 actgtacgac gcgctacaca aaccggagat gcaggactct ctgtgctgga acaccgacac
    12061 cggcagcggc ggctataccc ataaattctt ccgcgtggcg aaaagtgcca acgacctgcg
    12121 ccagcaacgc gatgccatcg ctgagtggtc acgcctgagc tatggctgga tgggccgtac
    12181 cccagactac aaagctgctt tcggttgcgc actgggcgcg aatccgggct tttacggtca
    12241 gttcgagcag aacgcccgta actggtacac ccgtattcag gaaactggcc tctactttaa
    12301 ccacgcgatt gttaacccac cgatcgatcg tcatttgccg accgataaag taaaagacgt
    12361 ttacatcaag ctggaaaaag agactgacgc cgggattatc gtcagcggtg cgaaagtggt
    12421 tgccaccaac tcggcgctga ctcactacaa catgattggc ttcggctcgg cacaagtgat
    12481 gggcgaaaac ccggacttcg cactgatgtt cgttgcgcca atggatgccg atggcgtaaa
    12541 attaatctct cgcgcctctt atgagatggt cgcgggtgct accggctcgc catacgacta
    12601 cccgctctcc agccgcttcg atgagaacga tgcgattctg gtgatggata acgtgctgat
    12661 cccatgggaa aacgtactga tctaccgcga tttcgatcgc tgccgtcgct ggacaatgga
    12721 aggcggtttt gcccgtatgt atccgctgca agcctgtgtg cgcctggcag tgaaattaga
    12781 cttcattaca gcactgctga aaaaatcact cgaatgtacc ggcaccctgg agttccgtgg
    12841 tgtacaggcc gatctcggtg aagtggtggc gtggcgcaac accttctggg cattgagtga
    12901 ctcgatgtgt tctgaagcga cgccgtgggt caacggggct tatttaccgg atcatgccgc
    12961 actgcaaacc tatcgcgtac tggcaccaat ggcctacgcg aagatcaaaa acattatcga
    13021 acgcaacgtt accagtggcc tgatctatct cccttccagt gcccgtgacc tgaacaatcc
    13081 gcagatcgac cagtatctgg cgaagtatgt gcgcggttcg aatggtatgg atcacgtcca
    13141 gcacatcaag atcctcaaac tgatgtggga cgccattggc agcgagtttg gtggtcgcca
    13201 cgaactgtat gaaatcaact actccggtag ccaggatgag attcgcctgc agtgtctgcg
    13261 ccaggcacaa agctccggca atatggacaa gatgatggcg atggttgatc gctgcctgtc
    13321 ggaatacgac cagaacggct ggactgtgcc gcacttgcac aacaacgacg atatcaacat
    13381 gctggataag ctgctgaaat aacgcagcag gaggttaaga tgcaattaga tgaacagcgc
    13441 ctgcgctttc gtgacgcgat ggccagcctg tcggcagcgg taaatattat caccaccgag
    13501 ggcgacgccg gacaatgcgg gattacggca acggccgtct gctcggtcac ggatacacca
    13561 ccatcgctga tggtgtgcat taacgccaac agtgcgatga acccggtttt tcagggcaac
    13621 ggtaagttgt gcgtcaacgt cctcaaccat gagcaggaac tgatggcacg ccacttcgcg
    13681 ggcatgacag gcatggcgat ggaagagcgt tttagcctct catgcaggca aaaaggtccg
    13741 ctggcgcagc cggtgctgaa aggttcgctg gccagtcttg aaggtgagat ccgcgatgtg
    13801 caggcaattg gcacacatct ggtgtatctg gtggagatta aaaacatcat cctcagtgca
    13861 gaaggtcacg gacttatcta ctttaaacgc cgtttccatc cagtgatgct ggaaatggaa
    13921 gctgcgattt aagctccagc cccttcacgt attcgtcgaa ggggcatttt tattgtgatc
    13981 tcaatcacat atccacccga tgaataattc ttgcccaacc gctcaccgcc attcctgacc
    14041 gcttacgtcc ctaaaataac cactcagtta tttaccttac tttacgcgcg cgtaactctg
    14101 gcaacatcac tgcaggatag cggtcaattt acctcctcaa acgcaacgca aacctagaac
    14161 ggcttcggcc tatgattaac aaattactct atgaattttg gtttgcagga aggcagcaag
    14221 tgagtgaatc cccgggagct tacaacagta agtgacagag gtgaacgaac gcagctgccg
    14281 cacctgtaag ccaaaagacg acgagtaaaa tgccaggttt tactatggat acgaaaaaac
    14341 tattcaagca cataccctgg gtgattctcg gaatcatcgg tgcattctgc ctcgcggtag
    14401 ttgcattacg tcggggggag cacgtcagcg ccctgtggat cgtggtcgcc tctgtgtcgg
    14461 tgtatctggt ggcgtatcgc tactacagtc tgtacatcgc ccagaaggtg atgaaactcg
    14521 accccacgcg cgcgacgcct gcggttatta acaacgacgg tctgaactac gttccgacca
    14581 accgttacgt gttgtttggt caccacttcg ccgctatcgc cggtgccggt ccgctggttg
    14641 gtccggtgct cgccgcgcag atgggctacc tgcctggcac gctgtggctg ctggcggggg
    14701 tagtactggc cggtgcggtt caggacttta tggtgctgtt tatctcctct cgccgtaacg
    14761 gcgcatctct cggtgagatg atcaaagaag agatgggacc agtaccgggg actatcgcgc
    14821 tgtttggctg tttcttaatc atgatcatca tcctcgccgt tctggcgctg attgtggtta
    14881 aagccctggc cgaaagtccg tggggtgtct tcaccgtttg ctcaaccgta ccgattgcgc
    14941 tgtttatggg tatctacatg cgctttatcc gtccggggcg tgtaggtgaa gtttctgtta
    15001 ttggtatcgt gctgctggtt gcctctatct atttcggtgg cgtgattgct cacgatccgt
    15061 actggggtcc ggcactgacc tttaaagaca ccaccattac cttcgcgctg attggctatg
    15121 cgtttgtttc cgcactgctg ccggtgtggc tgatcctcgc accgcgcgac tatctggcaa
    15181 ccttcctgaa aatcggcgtt atcgtcggcc tggcgctggg tatcgtggta ctgaacccgg
    15241 aactgaaaat gcctgcaatg acccagtaca ttgacggtac tggcccgctg tggaaaggcg
    15301 ctctgttccc gttcctgttc atcaccatcg cctgtggtgc ggtatctggc ttccacgcgc
    15361 tgatctcttc cggtacgacg ccgaaattgc tggctaacga aaccgacgca cgtttcattg
    15421 gctacggcgc aatgctgatg gaatccttcg tggcgattat ggcgctggtt gctgcgtcca
    15481 tcatcgaacc gggtctttac ttcgcgatga ataccccgcc tgctggcctt ggcatcacca
    15541 tgcctaacct gcatgaaatg ggtggcgaga acgcgccgat catcatggcg cagctgaaag
    15601 acgttaccgc acacgcggcg gcgaccgtca gctcctgggg cttcgtgatt tcgccagagc
    15661 agatcctgca aaccgcgaaa gacattggtg agccttctgt cctgaaccgt gcaggtggcg
    15721 cgccgacgct ggcggtaggt atcgctcacg tgttccacaa agtgctgccg atggctgaca
    15781 tgggcttctg gtatcacttc ggtattctgt tcgaagccct gttcatcctg accgcgctgg
    15841 atgcgggtac tcgttctggc cgctttatgc tgcaagacct gctgggtaac ttcatcccgt
    15901 tcctgaaaaa aaccgactct ctggttgccg gtatcatcgg tactgcgggc tgtgtgggtc
    15961 tgtggggcta cctgctgtat cagggcgtgg tcgatccgct gggcggcgtt aagagcctgt
    16021 ggccgctgtt cggtatttcc aaccagatgc tggcagccgt agcgctggta ctgggcaccg
    16081 ttgtgctgat taagatgaag cgcacccaat acatctgggt aactgttgtt ccggctgtat
    16141 ggctgcttat ctgcaccacc tgggcgctgg gtctgaaact gttcagcacc aacccgcaga
    16201 tggaaggctt cttctacatg gcaagccagt acaaagagaa gattgctaac ggtactgacc
    16261 tgacggcgca gcagattgcc aacatgaacc acatcgttgt gaacaactac accaacgcag
    16321 gcctgagtat tctgttcctg attgtggtgt acagcatcat cttctacggt ttcaaaacct
    16381 ggcttgcggt gcgtaacagc gacaaacgta ctgacaaaga aactccgtac gttccaatcc
    16441 cggaaggcgg cgtgaagatc tcttcgcacc actaaccggt tgccggatgc gctgcgcgta
    16501 tccggcctac aaagtgtcta tcgtaggccg gataaggcgt ttacgccgca tccggcaaat
    16561 ccctagcccg gaccttccgg gctttacgca tatctggaag gcaaaatgtt tggtaactta
    16621 ggacaggcaa aaaaatatct cggccaggcg gcgaagatgt tgattggcat tccagactac
    16681 gacaactacg tcgagcatat gaagaccaac catcccgaca agccgtacat gagctatgaa
    16741 gaattcttcc gcgaacgcca gaacgcgcgc tacggcggcg atggtaaagg cggtatgcgc
    16801 tgttgttaat ggagagagca tgaacccgat tgcagttacc ctactcaccg gttttttagg
    16861 cgcgggcaaa accaccctgc tgcgccatat tcttaacgaa caacacggct acaagattgc
    16921 cgtgattgaa aacgaattcg gcgaagtctc cgttgatgat caactgattg gcgaccgcgc
    16981 cacgcagatc aaaacgctga ccaacggctg catctgctgt tcgcgctcca acgagctgga
    17041 agacgcacta ctcgacctgc tggataatct cgacaagggc aatattcagt tcgaccgtct
    17101 ggtcattgaa tgcaccggca tggccgatcc cggcccgatt attcagacct tcttctccca
    17161 tgagatttta tgccagcgct acctgctgga cggggtgatt gcgctggtgg atgcggtaca
    17221 tgccgatgag cagatgaacc agttcaccat cgcccagtcc caggttggct acgccgaccg
    17281 tattctgctg acgaaaaccg acgtcgcagg cgaagcagag aaactgcgtg aacgcctggc
    17341 gcgcatcaac gcccgcgcac cggtctacac cgttacccac ggcgatatcg acctgggcct
    17401 tctgttcaac accaacggtt ttatgctgga agaaaacgtc gtcagcacca aaccgcgttt
    17461 ccactttatc gcggacaaac aaaacgatat ttcgtcgatt gtggtggaac tggattaccc
    17521 ggtagatatc agcgaagttt cccgggtgat ggaaaacctg ctgctggaat cggcggataa
    17581 actgctgcgt tacaaaggga tgctgtggat tgacggcgaa cctaaccgcc tgctgttcca
    17641 gggcgtccag cgcctctaca gcgccgactg ggaccgcccg tggggcgatg aaaaaccgca
    17701 tagcacgatg gtgtttatcg ggattcagtt gccggaggat gagattcggg cggcgtttgc
    17761 gggactcaaa aagtaaccag ccctccaaca tcacaatacc tgagacttta tcaccctcat
    17821 attcctccag aatatgaggg cattcgggct taattatctc tgaacgtgca acacttccta
    17881 cgactcctta tgcgcctcca catcctgctt cgttaaccag agcgacttac gaccaaaatt
    17941 ttcgtacatt ttcagctgat cttcatagtg ctgatcaact gttccatcgg gagcaataaa
    18001 cccactctga ccgggtgcga ccacatccca ggcaagcacc ggacgatcgc ttgtcgttgg
    18061 tgagaaaaca atcatatcgt tttctgttcc acggttttga tactccgcct gatgacgcgt
    18121 ttcttccgct gcggcctgcg gtacatcaaa gaaattattt gcccggaacg ttaaggccat
    18181 tgcaggtgtt ttccagttac tcacattatt gccatagcgt ttggaaagag tctcccaggt
    18241 atcttccagc gcagccaaca caacctcctg ctgtggtttc ccagcaaaca gatcaaccgc
    18301 ctgtgggatt ggtgatttgt ctccctgcac cgcctcatac aaaatttttg ctccaacact
    18361 tatattcagc gaaccagttg ggccgtcctg ggttgtttcg tagccactgg cgctgtacca
    18421 cttatcaaat ggcataggta cggcagccac tacggtacgc ttcaacatac tggtcagcca
    18481 aacgttcagg atggcag
//
LOCUS       DAJVUP010000078        17916 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.078, whole genome shotgun sequence.
ACCESSION   DAJVUP010000078 DAJVUP010000000
VERSION     DAJVUP010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17916
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.078"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            669..1034
                     /locus_tag="OQQ75_002402"
     CDS             669..1034
                     /locus_tag="OQQ75_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1976698.1"
                     /translation="MEKCDFYHIIVLSLNFPGYLKMEYGSTKMEERLSRSPGGKLALW
                     AFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGAL
                     LGSIAWYTRPRPARSRRYE"
     gene            1074..1769
                     /locus_tag="OQQ75_002403"
     CDS             1074..1769
                     /locus_tag="OQQ75_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HCS1976699.1"
                     /translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD
                     DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH
                     VIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ
                     HRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEG
                     VDHKVIDAFSPAG"
     gene            1836..3254
                     /gene="dcm"
                     /locus_tag="OQQ75_002404"
     CDS             1836..3254
                     /gene="dcm"
                     /locus_tag="OQQ75_002404"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-cytosine methyltransferase"
                     /protein_id="HCS1976700.1"
                     /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH
                     WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG
                     FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH
                     IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP
                     AMFVLENVKNLKSHDQGKTFRIIMQMLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR
                     ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR
                     YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMAKGEKDFDDP
                     LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL
                     EPKIKQAVALRQQEAQHGRRSR"
     gene            3235..3705
                     /gene="vsr"
                     /locus_tag="OQQ75_002405"
     CDS             3235..3705
                     /gene="vsr"
                     /locus_tag="OQQ75_002405"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VSPR family DNA mismatch endonuclease"
                     /protein_id="HCS1976701.1"
                     /translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA
                     SLPGSPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS
                     RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA"
     gene            complement(3694..4614)
                     /gene="yedA"
                     /locus_tag="OQQ75_002406"
     CDS             complement(3694..4614)
                     /gene="yedA"
                     /locus_tag="OQQ75_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HCS1976702.1"
                     /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
                     LAAGILLMAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV
                     VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI
                     SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL
                     ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI
                     VFAVVLVTLGKYLFPAKPVVAPVIQDASSE"
     gene            4787..5704
                     /locus_tag="OQQ75_002407"
     CDS             4787..5704
                     /locus_tag="OQQ75_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HCS1976703.1"
                     /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN
                     AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF
                     EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDSLKFEKDKIKGAIRTDFILSAEIVA
                     ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG
                     KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT
                     VLNLILGFIIGGIVVLGVKAVAKIRGQAH"
     gene            5783..5965
                     /locus_tag="OQQ75_002408"
     CDS             5783..5965
                     /locus_tag="OQQ75_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2158 domain-containing protein"
                     /protein_id="HCS1976704.1"
                     /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH
                     ETELVPGEGSRSAEEV"
     gene            6136..7830
                     /gene="yedQ"
                     /locus_tag="OQQ75_002409"
                     /pseudo
     CDS             6136..7830
                     /gene="yedQ"
                     /locus_tag="OQQ75_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310721.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis regulator YedQ"
     gene            complement(7827..8642)
                     /locus_tag="OQQ75_002410"
     CDS             complement(7827..8642)
                     /locus_tag="OQQ75_002410"
                     /EC_number="3.1.3.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate phosphatase-related
                     protein"
                     /protein_id="HCS1976705.1"
                     /translation="MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLSRLREANVPVI
                     LCSSKTSAEMLYLQKTLGLQGVPLIAENGAVIQLAEQWQDIDGFPRIISGISHGEISQ
                     VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ
                     FTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND
                     APLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR"
     gene            complement(8940..9156)
                     /gene="yodD"
                     /locus_tag="OQQ75_002411"
                     /pseudo
     CDS             complement(8940..9156)
                     /gene="yodD"
                     /locus_tag="OQQ75_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416463.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid resistance protein YodD"
     gene            9319..9507
                     /gene="dsrB"
                     /locus_tag="OQQ75_002412"
     CDS             9319..9507
                     /gene="dsrB"
                     /locus_tag="OQQ75_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein DsrB"
                     /protein_id="HCS1976706.1"
                     /translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGI
                     WFFNEAGHQDGIFVEKAE"
     gene            complement(9551..10174)
                     /gene="rcsA"
                     /locus_tag="OQQ75_002413"
     CDS             complement(9551..10174)
                     /gene="rcsA"
                     /locus_tag="OQQ75_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HCS1976707.1"
                     /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD
                     SQRPSVVFINEDCFIHDASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKNLL
                     ISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD
                     QMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR"
     gene            complement(10459..11244)
                     /gene="fliR"
                     /locus_tag="OQQ75_002414"
     CDS             complement(10459..11244)
                     /gene="fliR"
                     /locus_tag="OQQ75_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HCS1976708.1"
                     /translation="MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL
                     GLAMMITFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
                     GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG
                     GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGF
                     PLTLTVGISLMAALMPLIAPFCEHLFSEMFNLLADIISELPLI"
     gene            complement(11253..11522)
                     /gene="fliQ"
                     /locus_tag="OQQ75_002415"
     CDS             complement(11253..11522)
                     /gene="fliQ"
                     /locus_tag="OQQ75_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HCS1976709.1"
                     /translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI
                     NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG"
     gene            complement(11532..12268)
                     /gene="fliP"
                     /locus_tag="OQQ75_002416"
                     /pseudo
     CDS             complement(11532..12268)
                     /gene="fliP"
                     /locus_tag="OQQ75_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310714.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly.; frameshifted; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
     gene            complement(12268..12633)
                     /gene="fliO"
                     /locus_tag="OQQ75_002417"
     CDS             complement(12268..12633)
                     /gene="fliO"
                     /locus_tag="OQQ75_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliO"
                     /protein_id="HCS1976710.1"
                     /translation="MNNHATVQSSTPVSAAPLLQVSGALIAIIALILAAAWQVKRLGF
                     APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI
                     PQTDFQSVMKNLLKRSGRS"
     gene            complement(12636..13049)
                     /gene="fliN"
                     /locus_tag="OQQ75_002418"
     CDS             complement(12636..13049)
                     /gene="fliN"
                     /locus_tag="OQQ75_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HCS1976711.1"
                     /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGG
                     GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
                     GYLIAQGEVVVVADKYGVRITDIITPSERMHRLSR"
     gene            complement(13046..14050)
                     /gene="fliM"
                     /locus_tag="OQQ75_002419"
     CDS             complement(13046..14050)
                     /gene="fliM"
                     /locus_tag="OQQ75_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HCS1976712.1"
                     /translation="MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQR
                     RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL
                     NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL
                     ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC
                     LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL
                     KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK
                     "
     gene            complement(14055..14519)
                     /gene="fliL"
                     /locus_tag="OQQ75_002420"
     CDS             complement(14055..14519)
                     /gene="fliL"
                     /locus_tag="OQQ75_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HCS1976713.1"
                     /translation="MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADD
                     KAQQRVVPSPVFYALNTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLL
                     LLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR"
     gene            complement(14624..15751)
                     /gene="fliK"
                     /locus_tag="OQQ75_002421"
     CDS             complement(14624..15751)
                     /gene="fliK"
                     /locus_tag="OQQ75_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook length control protein FliK"
                     /protein_id="HCS1976714.1"
                     /translation="MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTD
                     KAAPQLLVATDKPTTKGEPLISDILADAQQADLLIPVDETLPVINDEQSTSTPLTTAQ
                     TMTLAAVADQNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKP
                     TLFTKLTSAQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPH
                     QTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLK
                     VDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ
                     QQQSQRTVNHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA"
     gene            complement(15748..16191)
                     /gene="fliJ"
                     /locus_tag="OQQ75_002422"
     CDS             complement(15748..16191)
                     /gene="fliJ"
                     /locus_tag="OQQ75_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FliJ"
                     /protein_id="HCS1976715.1"
                     /translation="MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLID
                     YQNEYRNNLNSDMSAGMTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWR
                     EKKQRLQAWQTLQERLSTAALLAENRLDQKKMDEFAQRAAMRKPE"
     gene            complement(16210..17578)
                     /gene="fliI"
                     /locus_tag="OQQ75_002423"
                     /pseudo
     CDS             complement(16210..17578)
                     /gene="fliI"
                     /locus_tag="OQQ75_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416451.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase FliI"
     gene            complement(17578..>17916)
                     /gene="fliH"
                     /locus_tag="OQQ75_002424"
     CDS             complement(17578..>17916)
                     /gene="fliH"
                     /locus_tag="OQQ75_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707825.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HCS1976716.1"
                     /translation="ASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGK
                     PQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQE
                     LCRLAAPGVV"
BASE COUNT         4395 a         4481 c         4716 g         4324 t
ORIGIN      
        1 gccgtagaaa tcaactttat tgccatcttt attgtaaatt tcagccgcat ttgctgcgcc
       61 agcaactaat aacgccggga ccagcattgc cagaactttt cttttcatta tgtattccct
      121 tgtgattata atcttcatga atatatcaat aagtgccgtt atccaaaaaa aagcacattt
      181 ggatactatt ctatgaagtt catttcattt taagtattac atgcaacaaa tgtatttaaa
      241 agatttcaaa atgtttctaa tctatttaat ataattcaga gatatgaatt ataaatattc
      301 atgaaaatta taaatgtata tcaatatgtt atgagttgag cggaaacata gggggtatca
      361 atgattgttg cgccaaacgg ctggtgtgat caggcgcaca ttaatgaagg cataaaaaaa
      421 agccggcatc atgccggccc aaaaaatata aacaagacga taaaaggcta ataacggaag
      481 catcatgaca cagaataata aaaaggtata attgtaatca gtgctaatat attgattaaa
      541 tgaattaata aagccgatat caaagataaa taaaatcgct caaaacgatt tttcctgtat
      601 tcactgccgt tgcgcaaaat ttatctattt gttcaaaaaa tgattgagtc ttgactggct
      661 catccaatgt ggaaaaatgt gacttttatc acataatagt actaagtctg aattttccgg
      721 gttatctcaa aatggaatac ggttcgacaa agatggaaga gagactctct cgcagccctg
      781 gcggcaaact ggctttgtgg gctttctata catggtgtgg ctatttcgtc tgggcaatgg
      841 cgcgttacat ctgggtgatg agccggatcc ccgatgcccc cgtgtcggga tttgaaagcg
      901 atttaggctc taccgcggga aagtggttag gggcactggt cggattttta tttatggctc
      961 tggtcggggc attgttaggc agcattgcct ggtacacccg acctcgtccc gcacgtagca
     1021 gacgctatga ataaaaactg ctaaggtggc gactctttgg caacggagcg cgtatggact
     1081 tacaacactg gcaggcacag ttcgaaaact ggttgaaaaa ccatcatcag caccaggacg
     1141 cggcccatga cgtgtgtcat tttcgccgcg tctgggctac ggcacagaag ctggcggcag
     1201 atgacgatgt cgatatgctg gtgattttaa ccgcctgtta ttttcacgat attgtgagcc
     1261 tggcgaaaaa tcatccgcaa aggcagcgtt cttcaatcct ggcggcagaa gagacgcgtc
     1321 gcctgctccg tgaagagttc gagcaatttc cggcggagaa aatcgaggcc gtttgtcatg
     1381 tcattgccgc tcacagtttc agcgcgcaaa tcgccccctt aacaacggaa gctaaaatcg
     1441 tccaggatgc ggatcggctg gaagccctgg gggcgattgg cctggcgcgc gtgtttgccg
     1501 tttcaggggc attgggcgtg gcgctgtttg atggtgaaga tccgttcgca cagcatcgcc
     1561 cgcttgatga taaacgctac gcgctggatc atttccagac taagttgctg aagctaccgc
     1621 aaaccatgca aaccgcaaga ggcaagcagc tggcgcagca caacgcgcat tttttagtcg
     1681 agtttatggc gaagctcagt gccgaactgg cgggggagaa tgaaggtgtc gatcacaagg
     1741 tgatagatgc gttttcaccc gcgggataag cgcgtggccc taaatggctg taattatgtt
     1801 aacctgtcgg ccatctcaga tggccggtta aatctatgca ggaaaatata tcagtaaccg
     1861 attcatacag caccgggaat gccgcacagg caatgctgga gaaactgctg caaatttatg
     1921 atgttaaaac gctggtggcg cagcttaatg gtgtgggtga gaatcactgg agcgcggcaa
     1981 ttttaaaacg tgcgctggcg aatgactcgg catggcaccg tttaagtgag aaagagttcg
     2041 cccatctgca aacgttgtta cccaaaccac cggcacatca tccgcattat gcgtttcgct
     2101 ttatcgatct atttgccgga attggcggca tccgtcgcgg ttttgaatcg attggcggac
     2161 aatgcgtgtt taccagcgaa tggaacaaac atgcggtacg cacttataaa gccaaccatt
     2221 attgcgatcc ggcgacgcat cattttaatg aagatatccg cgatatcacc ctcagccata
     2281 aagaaggcgt gagtgatgag gcggcggcgg aacatattcg tcaacacatt cctgaacacg
     2341 atgttttact ggccggtttc ccttgtcagc cattttcgct ggctggcgta tcgaaaaaga
     2401 actcgctcgg gcgggcgcac ggttttgcct gcgataccca gggcacgctg ttttttgatg
     2461 tggtacgcat tatcgacgcg cgtcgtccgg cgatgtttgt gctcgaaaac gtcaaaaacc
     2521 tgaaaagtca cgaccagggt aaaacgttcc gcatcatcat gcagatgctg gacgaactgg
     2581 gctatgacgt ggctgatgca gaagataacg ggccggacga tccgaaaatc atcgatggta
     2641 aacattttct gccgcagcac cgtgaacgca tcgtgctggt gggttttcgt cgcgatctta
     2701 atctgaaagc cgattttact ctgcgtgata tcagcgaatg tttccctgca cagcgagtga
     2761 cgctggcgca gctgttggac ccgatggtcg aggcgaaata tatcctgacg ccggtgctgt
     2821 ggaagtacct ctatcgatat gcgaaaaaac atcaggcgcg cggtaacggc ttcggttatg
     2881 gaatggttta tccgaacaat ccgcaaagcg tcacgcgtac gctgtctgcg cgttattaca
     2941 aagatggcgc ggaaatttta atcgatcgcg gctgggatat ggccaaaggt gagaaagact
     3001 ttgacgatcc gctgaatcag caacatcgtc cacgtcggtt aacgcctcgg gaatgcgcgc
     3061 gcttaatggg ttttgaagcg ccgggagaag cgaaattccg cattccggtt tcggacactc
     3121 aggcctatcg ccagttcggt aactcggtgg tcgtgccggt ctttgccgcg gtggcaaaac
     3181 tgcttgagcc aaaaatcaaa caggcggtgg cgttgcgtca gcaagaggca caacatggcc
     3241 gacgttcacg ataaggccac tcgcagcaaa aatatgcgcg cgattgccac gcgtgatacg
     3301 gcgattgaga agcgcctcgc cagtctgtta accgggcagg gcctggcgtt tcgcgttcag
     3361 gacgccagtc tgcccggaag cccggatttt gtcgttgatg aatatcgctg cgtgatattt
     3421 acccatggct gcttctggca tcatcatcac tgctatctgt ttaaagtgcc tgcgactcga
     3481 accgagttct ggctggagaa gataggtaaa aatgttgaac gcgatcgccg cgatatcagt
     3541 cgtttgcagg aactcggctg gcgcgtactg attgtctggg agtgtgcatt acgtgggcgc
     3601 gagaagctga cggatgaagc gcttaccgag cgtctggaag agtggatctg cggcgaaggt
     3661 gccagcgcgc agatcgacac gcaggggatt catttactcg cttgatgcgt cctgaataac
     3721 tggcgcaact acgggttttg ccgggaagag atattttccc aacgtgacca gtaccaccgc
     3781 gaagacaatt acgccgagcg ccagccattc aatcttcgac agcgtctctc cgcccagtcc
     3841 cgtacccagc aagaccgcga ccaccgggtt aacgtaggcg tagctggtgg cgagagccgg
     3901 actgacatta cggattaaat acatataagc gttgatggcg ataatcgaac caaacagcgc
     3961 cagatagccg accgcaagga agcctgaaag ggaagggagc gccgtcagtt tttcacctgc
     4021 aatcatcgac gcgatcatta acaccacgcc tgccgccagc atctcaatcg cacccgccat
     4081 catccctaca ggtaaggtaa tgcgcgagcc ataaaccgag ccaaacgccc agctaatcga
     4141 gccgattaaa atcagaatcg cgccccacgg attgccgctt aaatttccac cgctattgag
     4201 catgatgatt ccggcaagcc caatggcgat acccacccat tccaatttgc gcgttttaat
     4261 gccaaacagg cggctgaagc acagggtaaa gaggggcacg gttgcaacca caacggcggc
     4321 gatgccggaa ggaacatttt gatgctcggc aaccgtcacc atgccattac cgacagccag
     4381 caataacagg ccaatcagcg cggcattgag cagcggacgt agcgggggga gcttgtgtcc
     4441 gcgcagtagc aaaaatgcca tcaataaaat accggctgcc aggaatcgaa cgcctgccat
     4501 cattaacgga ggccagcttt ccacgccaat ccgaatgaca aaataggttg agccccaaat
     4561 gatatacaac gcaaacagcg cgccaaaaag cggtaacaac tggcggaaac gcataatccc
     4621 tcacggtgga aataaaaagg tggttcatag taaacgtgaa aatcattctg ctggcgagag
     4681 atataattgc acttgattgt taaaaaaatg ttgacctgtg aagcaagtat cagagctgcc
     4741 gtttttgctt catacttaca cccttcaaca ataaaaatga gagggaatgc ttttggccgg
     4801 gagtagttta ctgacgttgc tcgatgatat cgccacacta ctggacgata tctccgtgat
     4861 gggcaaactg gcggcgaaga aaaccgccgg tgtattaggg gatgacttat cgctcaatgc
     4921 gcaacaagtt tcaggcgtgc gggccaaccg ggaacttccc gtggtctggg gcgtggcgaa
     4981 aggatcgctg attaataaag tgattctggt gccgctggcg ctgatcatca gtgcgtttat
     5041 cccgtgggcg attacgcctc tgttgatgat tggtggcgcg tttctctgct ttgaaggagt
     5101 agagaaagtg ctgcatatgc tggaggcgcg taaacataaa gaagatccgg cgcagagcca
     5161 gcagcgtctg gagaagctgg cggcgcagga ttcgctgaag tttgaaaagg acaaaataaa
     5221 aggggcgatt cgtaccgatt ttatattgtc tgccgaaatc gtcgccatca cgctggggat
     5281 tgtggccgaa gcgccgttgc ttaatcaggt gctggtgctt tcaggcatcg cgctggtagt
     5341 gaccgtgggc gtctacggtc tggtaggggt tatcgttaag attgatgacc tggggtattg
     5401 gctggcggaa aaatccagcg cgctgatgca ggcattaggt aaagggttat tgatcattgc
     5461 gccctggctg atgaaagcgt tatcgattgt cggcacgctg gcgatgttcc tcgtcggcgg
     5521 cgggattgtg gtacatggta ttgcgccgct gcatcacgcc attgaacatt tcgctgggca
     5581 gcaaagtgca gtggtggcga tgatattacc gactgtttta aatctgattc ttggatttat
     5641 catcggcggc atcgtggtgc tgggagtgaa agccgtagcg aaaatacgcg gtcaggcaca
     5701 ttaatactcg cacaggctat tatgcaaaat tcgccatctt caactaaggt gaacaagttt
     5761 cactcgaaaa aaggaggcga gtatgagctt tatggttagt gaggaagtta cggttaaaga
     5821 gggcggcccg cggatgattg tcaccggata ctccagcggt atggttgagt gtcgttggta
     5881 tgacggttac ggggtcaagc gggaagcttt tcatgaaacc gagcttgttc cgggggaggg
     5941 gagtcgttct gcggaagaag tttgaaaggg tatcattaac accaggccgg atcacttccg
     6001 gcctggtgtg ccaatgcctg caatgaatga tagtcgcgtc ttatcatgcc accattataa
     6061 aattatcgct gttttgcggt acgctatcgc caggttatgc cagaatcata aaaaagcagg
     6121 ttgggagtcg tcagggtgca gcacgagaca aaaatggaaa accagagctg gttgaaaaaa
     6181 atcgcacgcc gcctggggcc tggtcatgtc gttaatctct gctttatcgt ggtattgctt
     6241 ttttccacct tgctgacctg gcgtgaagtg gtagtgctgg aagatgccta tatctccagt
     6301 cagcgtaatc atctggaaaa cgtagccaac gcgctcgata agcatttgca gtataacgtc
     6361 gacaaactga tctttttgcg taatggcatg cgcgaagctc tcgtagcgcc actggatttc
     6421 acttcactgc gtaatgctgt aaccgagttc gaacagcatc gcgacgagca cgcctggcaa
     6481 attgaactca accgacgacg caccctgtca gtcaatggcg tatcggatgc attagtcagc
     6541 gaggggaatc tcctgtctcg cgaaaatgaa agcctcgaca atgaaattac cgctgcactg
     6601 gaagttggtt acttgctgcg actggcgcac aacacctcgt cgatggttga acaggcgatg
     6661 tatgtctcgc gtgccggatt ttacgtttcg acgcagccga ccttgtttac gcgcaatgta
     6721 ccaacgcgtt attacggcta tgtcacccaa ccctggttta tcggccattc gcaatgagaa
     6781 aatcgtcacc gcgcggtacg ctggtttact tcgcaaccgg aacacgccag caatactgaa
     6841 ccgcaggtta ccgtcagtgt tccggtagac agtaataact actggtatgg cgtgctgggg
     6901 atgagtattc ccgtgcgtac catgcagcaa tttttaagaa acgccatcga taaaaacctc
     6961 gatggtgagt atcagctcta tgacagtaag ctgagatttt tgacctcttc caatcctgac
     7021 catccaacag ggaatatttt tgatcctcgt gaactggcct tgctggcgca ggcgatggaa
     7081 catgacacgc ggggcggcat tcgtatggac agtcgctatg ttagctggga acgtctggac
     7141 catttcgacg gtgtgctggt gcgcgtccat acgctaagcg aaggcgtgcg cggcgatttc
     7201 ggcagtatca gcattgcatt aaccctgctg tgggcgctct ttaccaccat gttactcatc
     7261 tcctggtatg tgattcgccg gatggttagc aacatgtatg ttctgcaaag ctcgttgcag
     7321 tggcaggcgt ggcacgacac cttaacccgt ttatataatc gtggcgcact gtttgaaaaa
     7381 gctcgtccgc tcgcgaaatt gtgtcagacg caccaacatc ctttttctgt cattcaggtc
     7441 gaccttgacc attttaaagc gattaatgac cgctttagtc atcaggcggg cgaccgtgtt
     7501 ctttctcatg ctgccggatt aattagcagt tccttgcgtg cgcaggacgt tgccgggcgg
     7561 gtcggtggtg aggagttttg tgtgattctg ccaggcgcga gtctgacgga ggctgcggaa
     7621 gtcgcagaac gtattcgcct gaagttaaat gaaaaagaga tgttgattgc taagagtacg
     7681 acgatacgca tcagtgcctc gttgggggta agtagcagcg aggaagccgg tgattatgat
     7741 tttgaacaac tccagtcact ggctgaccgt cggctttatc tcgctaaaca ggccgggcgt
     7801 aatcgggtat gcgcgagcga taacgcttaa cgagcggaga aaaaatggtc cagcccttca
     7861 cgccatcctt ccggtccttc acgctgcgtt cgccagacgc gggccggatc ctcatcatgc
     7921 agatgcaccc cttcacggtt tagccctttc acaatcaccg cgtaatccat tacctccagt
     7981 aagggcgcat cgtttggccc atcgcccagg ccaagtgtgg ttgggcgttt gcctgataat
     8041 tgttgatagg tcgcgataat ccagttggcg gcctgatctt ttccggcaga ggcatccagg
     8101 acgtgccaga agcgcgcacc ctgcataaac tgtaagccca gttcgttcag acgagcggta
     8161 aattgtgcca tacgctcgtc actgtcgcgc cagattagcg ttaccgacgc ctcatgcagc
     8221 tgcgtcagcg ccgcctggct acggcttaat cccgtccatt cggcgatggt tgcatcgtcg
     8281 acatcatcga aagtcgtgaa tttaaaatgt tctttctcgc gtagcgtatt taaaacctgg
     8341 ctgatttcgc catggctaat acctgagatg atgcgtggaa aaccgtctat atcctgccat
     8401 tgttcagcaa gctggatcac tgcgccattt tcggcaatca gtggtacccc ttgtaacccc
     8461 aacgtttttt gcaagtacag catttccgct gaagttttac tgctacagag aatgacggga
     8521 acattcgctt cgcgtaaacg gctgagccag ggggcagccg gttgccagtc ataactatga
     8581 ctgtccagca gggtgccatc aagatcgcta aaaaccagta gtggttgttg aattgaaaac
     8641 atggtcgcgc agttctcccc ttaccaggat gattctcaaa acagcacaaa taatcaaaga
     8701 tgattttttc gggagcgatc ccgttgacgc cagagccacc aaggggtgac gcacgtcaca
     8761 tttctattca taagtagcgt taatcattca tatcgcgaat attttcttgt cagcgaaaaa
     8821 aattgcggat aaggtgatga acacatcaga tttcctggtg taacgaattt tttaagtgct
     8881 tcttgcttaa gcaagtttca tcccgacccc ctcagggtcg ggattttttt attgtgcatt
     8941 caacgattca cttcagagac gctgaagtca tgaatatcca gttcgaaggc atccgccaat
     9001 tcacgccatg tatgatattc acgtccatcg acgctaacgt gttcagaatc gttctggctg
     9061 cgatgaactt atttcattga tcgccgccag cagggcatcg acatcgacgc tgacctcacg
     9121 ttttgcggta tcgctgtact cttttgcggt tttcatcatc tttcctcgca accgttactc
     9181 tgttgttgcc gccagtcgtt aagtccgcct ggcatctctt aagtatagac cgtcgagaaa
     9241 atcagcactc gcgcgcgcct ggcgctgcca gaaaaacgaa attgttctac actggcacaa
     9301 agccacagga ggaaaacgat gaaggtgaat gatcgggtaa cagtcaaaac ggatggcggt
     9361 ccgcgtcgtc ctggcgtggt actagcagtt gaggagttta gtgaaggcac aatgtacctg
     9421 gtttcgctgg aagactaccc gctcggcatc tggttcttta atgaagcagg gcatcaggac
     9481 ggtatctttg tggagaaagc agagtaatct tattcagcct gactggtggg aaaccaccag
     9541 tcagaatgtg ttagcgcatg ttgacaaaaa taccattagt cacattatcc gtcagtcgga
     9601 cgacatggta gataacctgt ttattatgcg ttttgatctt acgtttaata ttacctttat
     9661 gcgatgaaac ggtcttggct ttgatattca tttggtcaga gatttgaatg gttccctgac
     9721 ctgccatcca cattcgcaac atactcgatt cggttcggct caatgataac gtcggcatat
     9781 ttaaaaaaga ggttatcgtt gtctcttttt tcagaatatc gccaaggata tcgtcgagag
     9841 attccggttt aatcgattta gaacttatca ataaattttt tctgaccaat agatattcat
     9901 caaaatgaac attggcaatt gccataaaaa cgataaataa cgtattggga tgttgattaa
     9961 tgatgtgctt gatgtgctga ctgttagaag catcatggat gaaacagtcc tcattaataa
    10021 acaccactga agggcgctgt gaatcacaag ctatggcaag gtcatcaacg gtttcaatgt
    10081 cgttgatttc tcttttttta acccctctac tcaacagata cccggttaaa cctagtcggg
    10141 tgtaactaca taaatccata ataatcgttg acatggcata ccctcactca atgcgtaacg
    10201 ataattcccc ttacctgaat atttcatcat gactaaacgg aacaacatgg gtcacctaat
    10261 gcgccactct cgcgattttt caggcggact tactatcccg taaagtgttg tataatttgc
    10321 ctggaattgt cttaaagtaa atgttgcgat atgtgagtga gcttaaaaca aatatttcgc
    10381 cgcaggagta tcctggaaga tgttcgtagg tattattttt cggataatcc ttaggataac
    10441 atgataaacg ttacggaatt atattaatgg caattcacta ataatatcag ccagcaaatt
    10501 aaacatctca ctgaataaat gttcgcaaaa aggtgcaatt aacggcatta atgccgccat
    10561 taaagagata ccgacagtca gagttaatgg aaatccaata acaaaaatgg ataattgcgg
    10621 ggccatacga ttcagtaaac ctaatgccag attcagggtc agcagcagag taatgagcgg
    10681 taacgccagc atcagcccgt taaggaaaat caaactcccc gctttggtga gtgccagaaa
    10741 cgcattgctg ttcaacggtt cgccaccaat tggcagggtg tgaaaggtat cgaccagcag
    10801 tgaaatcaac cataaatgac cgttaaatgt caggaacagc agtaacgcca gcatatccat
    10861 gatacgcgct aaaacgggca tattgagatg gctggccgga tcgacaaacg tcgcaaatga
    10921 cagccccatt tgcagaccga taatttcgcc agcggttcgc acagcggcaa aggcaaattg
    10981 catggtaaaa ccaagcgcaa tgccgatcag gatctgctgc acggccagcc acagagcaaa
    11041 gaacgaaaaa acaggaacat cgttggcagg taatgatggg gcaatgacga acgtgatcat
    11101 cattgccagc cccagtttta cccgtttcgg cacgctgcgt tcgctcagaa ttggtgcggt
    11161 agaaatgagc gccagcacgc gcagtaacgg ccagaagtac aggcttaacc aggaaagcca
    11221 ttgatcgctt gtcacctgca tcattgtacg gcctacccga tgatatacgg caggttagtg
    11281 aacaaggtgc ggacgtaatc cagcaacaga ttgagcatcc acggtccggc aataataatg
    11341 gcaataaata cggcgatgat ttttggaata aacgacagcg tcatttcgtt gatctgcgtg
    11401 gcggcctgca aaatactgat gataaggccc gtgaccagcg ccaccagcaa cagcggggca
    11461 gccagtgcca gcgcgacttt catcgcttca gtccccatca tcatgaccga ttcaggtgtc
    11521 attttgcctc tctagctgta aaagctctgc gccagcgaac cgaccagcaa ttgccagcca
    11581 tccaccagta caaacagcat cagtttaaag ggcagagcaa tggtggcggg gggaccatca
    11641 tcatccccaa tgccatcaac acgctggcaa tcaccaggtc gataatcaaa aaaggaatga
    11701 aaatcgtgaa gcctatctga aatgcggttt tcaactcgct ggtcacgtag gccgggcgca
    11761 aaatgcgcat cggcacggct tcaggtccct gcaacgggcc ggtattcgct agtctggcaa
    11821 acaaccctaa atctgcctca cgggtctgac gcagcataaa ctcacgtagc ggctgcgccc
    11881 ctttttccag cgcctcctgc attgatattt tctcttcgct gaatggctgg tacgcatcga
    11941 cataaatttt gtcgatcacc ggtgacataa taaaaaaggt caaaaatagt gccagcccca
    12001 gcaatacctg gttaggtggc gcggagggcg ttcccagcgc gttacgcaat aaaccaaaaa
    12061 caatgatgat gcgggtgaaa ctggtcatca tcagtaaaat tgccggaata aacgtcaacg
    12121 aggtgatgaa caccagcgtc tgcaccggga gcgaccagct ttgtccaccg ccaggcagcg
    12181 gctggctggt gatacccggc agttgcgcga aggcgagggg cgtaaccagc cagagaagga
    12241 caggtgcgac agacaacaaa cgacgcatca ggatctccca ctacgcttaa gcaaattttt
    12301 catgaccgac tgaaaatcgg tctgcggtat ctcttctgtt ggtgctgaag ggggaagttt
    12361 atgcagcaga ttgatttgcc ctgcggtaac gccgagcacc agccgtgcat cttccacatc
    12421 gaccaccaca acccgttcac gcgcgcccag cgaagcactg gcgctaattt tcagaccgtt
    12481 aacgccagtg cgtttcgggg caaatcccaa ccgttttacc tgccaggcag cagcgaggat
    12541 cagggcaata atggcgatga gtgcgccgct gacctgcagc agtggcgcag cagaaaccgg
    12601 cgtggaagat tgcacagtag cgtggttatt catcactaac ggctcaggcg atgcattcgc
    12661 tcagacggag taatgatatc ggtgatccgc acgccatatt tatcggcaac gaccaccact
    12721 tcgccctggg cgattaaata accgttgatc agaatatcca gtggttcgcc cgccagaccg
    12781 tccagcgcca cgacggaccc ttgcgtcaga cgcaacagct ctttgatggt catccgcgta
    12841 cggcccagct cgacggtcag cttgaccgga atatccatta tcaggtcgat atcctgcaac
    12901 gttccgctga catcaccacc gccaaattgc tggaacaccg cgtcggcagc gcttttgctg
    12961 ctggttgatt tttgttcgct caacgcttca gcccacagat cgtccattgc gccgttgttg
    13021 tcatcggccg gattattcat gtcactcatt tgggctgttc ctcgttcaga gaatttaaaa
    13081 tcgggttaat caaatgttct atccgtaacg catactgacc gttgagagtg ccgtactgac
    13141 tggtcagcac cgggacgccg tcaacatggg cgatgatgcg atcaggtttt tctatcggca
    13201 ggacgtcgcc gggtttcagt tttaaaatct gcgacaggcg tagcgagata tcggcaaagt
    13261 tggcgaccag ctccagctgt gaatgctgca cctggcgcac caggttatcg cgccagttct
    13321 gatcttcatt acgcgagttt tccagcggcg ggttaaccaa caattcccgt agcggctcga
    13381 tcatgctgaa tggcagacag atattaaatt cgccggtcag gttgccaatc tccacatgga
    13441 acggcgtgtt aaccacaatg tcgttcggcg aggtggtgat attggtaaat ttcacctgca
    13501 tttccgaacg cacgtactca acttccagcg gattaatcgc cttccaggcg tcgctatagc
    13561 cttcaagcgc cagctttaac atgcggttga tgacgcgctg ttcggtatgg gtaaactcgc
    13621 gaccttccac tttggtcggg aagcgtccat cgccgccaaa caggttatcc acggcgataa
    13681 acaccagact cggtgaaaac accaccagcc ctgtgccgcg cagcggtttc agatggataa
    13741 ggttcaggtt ggtcggcacc ggcaggttgc gggcaaattc atggtacggc tgaatgcgga
    13801 tggccccgac ggttatatcc gggctacgac gcagcaggtt gaacagcccc atacgaaaat
    13861 ggcgggcaaa gcgctcatta atgatttcca gcgcctgcaa acgttcgcgc acaacccgtc
    13921 gttgggtatt cggatcgtac ggacgaatgt cactttcgcc gctaacactg gctgtcggtt
    13981 cgtctttgac ttcgctgtca ccattcaaca gcgcatcaat ttcagcttga gaaagaatac
    14041 tatcgcccat gtcgttatcg cagaataaaa gcggtataca gcacgtcggt gacatcctgt
    14101 ttcggttgcc cggcaacaag cggggtggaa agcgtggttt taatctcggc aatcaggttt
    14161 ttcttgcctt cttctgtcgc cagtacggca gcatcctgac gcgaaaacag taacagcaaa
    14221 cggctacgga cttccggcaa atactcactc agccgcgagc gggtagcttc atctttcagg
    14281 cgcagggtta tgccgatata aagcacgcga tccgcatcgc ccaaattgac cgtgaaggta
    14341 ttcagcgcgt agaagaccgg ggagggtacg acgcgttgct gcgctttgtc gtcagcggca
    14401 acctgatgcg aatgccagta gctgtaacct gcgctggcac aggccgcgag ggtaatgaat
    14461 accagaatcg ggatccaaag cgatcgcttg cttttcttgc ttatcgcgta atcagtcatg
    14521 tgttgcggtc ttcctgtgtc gctactgctt atcggctaat tatcctgcgt tttgagcgca
    14581 acaaagcggg gaaaagacgc ggattacggt gctacctctg acgttaggcg aaaatatcaa
    14641 cgccgctgtt gcctgttaca cgcccttgta aagagacggg aaccggaagc gtatcgtcgt
    14701 cttcccccgc cagaggttca tggtttactg tgcgttggct ttgctgttgt tgggaagcgg
    14761 cctgctgctg accactaaag ctttcgccac tgatgttgct ttgccctaac tgaatgccac
    14821 tttcggccag ctgcgtacgc agtaccggaa gcgctgcttc cagcgcggcg cgtacatgct
    14881 gatgcggtga aaccatctgg atttgcgcct ggttatcatc cactttgagg gagatttgca
    14941 cttcacctaa atcctgcggg tgcagacgca actctgcact ttgttgcccc tggcgggtga
    15001 acagcgaaat atgctggctt aatgattgtt gccattcgtg agaacccagc ggtgcactca
    15061 aaacaggcgc ggcgacggtg ggcagtggct gtgtctggtg tggagtaatt agcgggctgg
    15121 cggcagcggt caccggtgac ggtgtgctga tgacttccgc tttactctgg gcttctgcta
    15181 ccagcggtgt taatggctga gctggcgtgc cgggggcatc atcaggctgt gctgttgtga
    15241 gttgcgcaga agtcagtttt gtgaagagcg ttggtttctc tgccggtaac acggttgacg
    15301 gcacatcagt cactttgggc gtattgtcaa aacccggcaa catcgcaaaa agggcgctca
    15361 ggcttgcggt gacgtcttca ttcagatcat ccgctttttc gtcttttgtc gtattttggt
    15421 cagccaccgc agccaacgtc atcgtctgag cggtggttaa cggtgttgat gtggattgtt
    15481 cgtcgttgat gacaggcagt gtttcatcca cggggatcag taaatccgct tgttgcgcgt
    15541 cggcaagaat atcgctgatc agcggctcgc cttttgtcgt gggcttatct gttgccacca
    15601 gcaactgggg ggccgctttg tcggtagttg tctcgcctgc taatgcttcg ctcaacaacg
    15661 cgagaaaatc ttgtgcagca tcgctggctt tgccgccagg caatgtggtg gtgtcaacgt
    15721 cggcggtaat taagggcgct aagcgaatca ttcaggtttc ctcatggcgg cgcgctgggc
    15781 gaactcatcc atctttttct gatcgaggcg gttttctgca agcagtgccg ccgtggatag
    15841 ccgttcctgc agtgtctgcc aggcctgcaa acgttgtttc ttttctcgcc agctgttcag
    15901 ggcaatgtca actttctgcg tccactgatt aagttgctgg cgatgctgag taatggcttt
    15961 ttccagcgtc tggataaact gctgatagtt gatccagcgg ttgctggtca tcccggcact
    16021 catatcgctg ttgaggttat tgcgatattc attctgataa tcgatcagca ttttgagctg
    16081 ttcttccgcc tgctgacacc cgcgacgcat ttcacccagc aggcgcgcgg catcctctac
    16141 ctctttttct gccagatctt tcagggtcgc cagcgcgcca tgttctgcca tctgccgtta
    16201 tctcctgggt tatgacactg tcgggaaaat acgctccagc ccctggagag acgcttccca
    16261 gtccgcgcgt tcaaaaatgc cttgttgcaa atagccctcc agctgcggcc acagggcgat
    16321 ggctttgtcg agcatcggat cgctgccttt ggcatacgcg ccgacgctaa ccagatcgcg
    16381 gttacgctga aaactcgaca acagctgttt gaaggtgcgc actcgcgcgt aatgttgctc
    16441 actgatcaac gccgtcattg cgcggctgat cgacgcttca atatcgatag ccggatagtg
    16501 cccggcttcc gccagtcggc gagacagcac aatgtgaccg tcgaggattg cccgcgcaga
    16561 gtcggcaatg gggtcctgct ggtcatcgcc ttcagtgagc acggtataaa acgcggtaat
    16621 cgatccgccg ccgctaatgc catttccggc acgctcgacc agtgccggta atttggcaaa
    16681 caccgacggg ggataacctt tagtggcggg tggttcgcca atcgccagcg caatttcacg
    16741 ctgggccatc gcgtagcggg tgagggagtc cataatcagc aacacatgct gaccacgatc
    16801 gcgaaaatct tcggcaatgc gcgtggcata ggcggcaccc tgcattcgca ggagaggaga
    16861 aacatccgcc ggagcggcaa tcaccacgga gcgtgcacgc ccttcggcac cgaggatatt
    16921 ctcaataaaa tcttttactt cgcgtccgcg ttcaccaatc aaacccacga caatgacatc
    16981 ggcgcgggtg taacgtgcca tcatccccag cagcacactt ttaccaacgc cggacccggc
    17041 aaacagcccc atacgctgcc cacgcccaac ggtaagcagg gcattgattg ggcgcacgcc
    17101 ggtgtccagc acatgttcaa tcggtgtacg ttgcaacggg ttaaatggcg gggtaatcag
    17161 cgcaccggtt tccgtcgtat cgggggaggc catcgagcgg tttaccgctg ccgtccagaa
    17221 cacgacctaa taacgccgga ccgagcggta actgtttgcc gctttgcagc ccttctgccg
    17281 aaatgttttt ggcataaaca cgcgcgccgg gcaggacacc ttcgacttcc tccagcggca
    17341 ttaaaaacag ccgttgaccg ttaaagccaa cgacttcact ttctacttcg tgcgtttcag
    17401 tgccgttctg gcgctcaatc acacaggttg cgccgagcgg caattgtaat ccggtggctt
    17461 ccagcaccag cccggtagcg cgggttaatc gcccgtagcg acgtaccgca ggcaactgcg
    17521 ccattttggc ttcaaagtta tccagcgtgg ttagccagcg agtcaggcgc gtggtcatta
    17581 caccactcct ggtgctgcca gacggcagag ttcttgccag cgagtggcga cactggcgtc
    17641 gagatcgcct tcatcggcgg agactttaca gccgccagga tggagggtgg gatcgccccg
    17701 caagcgccag ccatgcaaac ttaaggtagc gccgagcata tcatccacac gttgcagatc
    17761 atccgggtgc acgcgcagct gtggtttacc gctgaataac ggttcttgct gcaacaactg
    17821 ttggatctgt ttgatgagtg ccgagttatc cactgttggc gtctgaccga tgacctgacg
    17881 tgctgcctcc agcgccatct gcatcaggcg cgaagc
//
LOCUS       DAJVUP010000079        17792 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.079, whole genome shotgun sequence.
ACCESSION   DAJVUP010000079 DAJVUP010000000
VERSION     DAJVUP010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17792
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.079"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..564
                     /locus_tag="OQQ75_002425"
     CDS             <1..564
                     /locus_tag="OQQ75_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976717.1"
                     /translation="SFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAII
                     ALINGIIGGVGGWFGFAHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINE
                     FVAYLNFSPYLQTGGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRVPEIAQ
                     LGLRALAAATLSNLMSATIAGFFIGLA"
     gene            complement(620..1708)
                     /locus_tag="OQQ75_002426"
     CDS             complement(620..1708)
                     /locus_tag="OQQ75_002426"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1976718.1"
                     /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK
                     GRIKGKGYILTEQEYCVVVGTINMDIRGIADIRYPQAASHPGTIHCSAGGVGRNIAHN
                     LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT
                     VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT
                     VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNAAVNALHQQGVQQLFVY
                     LPDESVYCSEKDGEQFLLTAPAHTTVDSFGAGDGFMAGLVYSFLEGYSFRDSARFAVA
                     CAAISRASGSLNNPTLSADNALSLVPMV"
     gene            complement(1711..2568)
                     /gene="nfo"
                     /locus_tag="OQQ75_002427"
     CDS             complement(1711..2568)
                     /gene="nfo"
                     /locus_tag="OQQ75_002427"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HCS1976719.1"
                     /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL
                     TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG
                     LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH
                     LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLN
                     DAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLK
                     AQQTEKAVA"
     gene            complement(2642..3691)
                     /locus_tag="OQQ75_002428"
     CDS             complement(2642..3691)
                     /locus_tag="OQQ75_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HCS1976720.1"
                     /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF
                     SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI
                     SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA
                     SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI
                     SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI
                     FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI
                     VGGGAINYVIQSVIA"
     gene            3791..4672
                     /locus_tag="OQQ75_002429"
     CDS             3791..4672
                     /locus_tag="OQQ75_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1976721.1"
                     /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ
                     LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY
                     ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE
                     DELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMEL
                     GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS
                     NALRRFLDYCDPANIPR"
     gene            4877..6346
                     /gene="lysP"
                     /locus_tag="OQQ75_002430"
     CDS             4877..6346
                     /gene="lysP"
                     /locus_tag="OQQ75_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-specific permease"
                     /protein_id="HCS1976722.1"
                     /translation="MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS
                     QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY
                     WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS
                     LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF
                     QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV
                     KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR
                     IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS
                     HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV
                     AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK"
     gene            6639..8619
                     /gene="cirA"
                     /locus_tag="OQQ75_002431"
                     /pseudo
     CDS             6639..8619
                     /gene="cirA"
                     /locus_tag="OQQ75_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416660.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor CirA"
     gene            complement(8651..9487)
                     /gene="yeiG"
                     /locus_tag="OQQ75_002432"
     CDS             complement(8651..9487)
                     /gene="yeiG"
                     /locus_tag="OQQ75_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HCS1976723.1"
                     /translation="MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPP
                     VLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGF
                     YLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPG
                     KYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLID
                     QGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL
                     LK"
     gene            9745..10413
                     /gene="folE"
                     /locus_tag="OQQ75_002433"
     CDS             9745..10413
                     /gene="folE"
                     /locus_tag="OQQ75_002433"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HCS1976724.1"
                     /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM
                     TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV
                     RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL
                     IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV
                     RHHN"
     gene            10430..11587
                     /locus_tag="OQQ75_002434"
     CDS             10430..11587
                     /locus_tag="OQQ75_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 family protein"
                     /protein_id="HCS1976725.1"
                     /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITP
                     QDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF
                     WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRA
                     WTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRS
                     GWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPF
                     QAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTMLFYHLGLFMHFDR
                     LELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGTAISKTSR"
     gene            11729..12769
                     /gene="galS"
                     /locus_tag="OQQ75_002435"
     CDS             11729..12769
                     /gene="galS"
                     /locus_tag="OQQ75_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708050.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalS"
                     /protein_id="HCS1976726.1"
                     /translation="MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELD
                     YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE
                     KERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDN
                     LSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGT
                     PDMPGGEAAMVELLGRNLQLTAIFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP
                     IARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQN
                     AAAITNSTNQAM"
     gene            13049..14047
                     /gene="mglB"
                     /locus_tag="OQQ75_002436"
                     /pseudo
     CDS             13049..14047
                     /gene="mglB"
                     /locus_tag="OQQ75_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416655.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
     gene            14108..15628
                     /gene="mglA"
                     /locus_tag="OQQ75_002437"
     CDS             14108..15628
                     /gene="mglA"
                     /locus_tag="OQQ75_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HCS1976727.1"
                     /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHAL
                     MGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ
                     RSVMDNMWLRRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEI
                     AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE
                     VTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQ
                     PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANE
                     AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDKSRMKSDTQWVIDS
                     MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA
                     ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL"
     gene            15644..16654
                     /gene="mglC"
                     /locus_tag="OQQ75_002438"
     CDS             15644..16654
                     /gene="mglC"
                     /locus_tag="OQQ75_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HCS1976728.1"
                     /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN
                     ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT
                     MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP
                     ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE
                     AAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG
                     VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPCWQYIIKGAIIIFAVALDSLKYAR
                     KK"
     gene            complement(16897..17792)
                     /gene="preA"
                     /locus_tag="OQQ75_002439"
                     /pseudo
     CDS             complement(16897..17792)
                     /gene="preA"
                     /locus_tag="OQQ75_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
BASE COUNT         4254 a         4406 c         4698 g         4434 t
ORIGIN      
        1 tcctttaata acctctcttt caccgaaaca ccgccaaaaa gcattattga agccgctgcg
       61 acaggggcaa tgaccgggct gaaaatcgcc gccggtgtag cgacagttgt tatggcattt
      121 gtcgccatca ttgcgttaat taatggtatt atcggcggcg ttggcggctg gtttggtttt
      181 gcacatgcct cgctggagtc cattttaggt tacctgttgg ccccattggc gtgggtgatg
      241 ggggttgact ggagtgatgc aaatcttgcc gggagtttga ttgggcagaa gctggcgatc
      301 aatgaatttg tcgcttatct caatttctcg ccatatctgc aaacgggtgg cactctggat
      361 gctaaaaccg tggcgattat ttctttcgcg ttgtgcggtt tcgctaactt tggttctatc
      421 ggggtggtgg tgggggcgtt ttctgcggtt gcgccacacc gtgtgccgga aatcgcccaa
      481 cttggtttac gcgcgctggc ggcggcgaca ctttctaacc tgatgagtgc tactattgca
      541 ggattcttta ttggtttagc gtagtgcgca atttatgagc cggataagat gcggtcaagc
      601 gtcgaatccg gcaacattgt tacaccattg gcactaatga aagcgcgtta tcggcagaca
      661 gggtagggtt gtttaagctg ccgctggcgc gcgaaattgc cgcgcaggct accgcaaaac
      721 gggcgctgtc gcggaaactg tatccttcaa gaaagctata taccaggccc gccataaaac
      781 catcgccagc accaaaactg tctactgtcg tatgcgctgg cgcggtcagc aaaaattgtt
      841 ctccatcctt ttcgctgcaa taaactgact catcgggcaa ataaacaaac agttgctgaa
      901 caccttgctg atgcaatgca ttcactgcgg cattacggtc agcatcgctg gtgatcgcct
      961 gtccccataa aatttccagc tccggtaaag tgggtttcag ggtgtgaata tgcgccagcc
     1021 agtgtttgat tttgcccgct ttgaattctg aaacggtatc gacaaacacc gggatttcat
     1081 cagcgagggt aaagacccat tccagcgcct cggctgtcag gttgcaatca gccagtacca
     1141 cgcccgcatg acgaagtaaa tcgcgcgacc cgttcagtag ttgcggtgtc aactgttcca
     1201 gcagatgggt atcgttaatc gccagcacgg tttgatcgtc tcgattggca attgccagat
     1261 acgtcgatgt gctttgacca tgcaaacgaa cgcagccgga gacattcacg ccggcacggc
     1321 gcgtttcttc caggagcatt tcgccataaa agtcatcgcc aatcactgaa agcaaatgga
     1381 cgtcacggcc taacagcgcc agattgtggg cgatgttgcg tcccacgccg cccgccgagc
     1441 aatgaattgt accgggatga gaagccgctt gcgggtaacg gatatccgcg atcccgcgaa
     1501 tatccatatt gattgtcccc accactacgc agtattcctg ctcggtgaga atgtaacctt
     1561 tgcctttaat ccgccctttg cgcattaaat ccataatatg cgccgcaacg cgcgaacgac
     1621 tgatttgcag catgtccgca atttcgttct gctgaatcag cgggttacgc cgtaaaattg
     1681 caaggatctc cttttcccgg ttattcatct tcaggctacc gctttttcag tttgttgcgc
     1741 tttcagccag gcgatctctt ctgcccagat atccgggttg atggtttcaa ggatcagcgg
     1801 aatgccgtcg aaacggtcgt cctgcatgat ccagcggaac gcatcatgac cgatattgcc
     1861 ttcaccgagg ctatgatggc ggtcaacgcg gctgccaaag gtgcttttcg catcgttaag
     1921 gtgcatcccg cgcagatact taaagccaac aatacgggca aaatccgcga acgttttctc
     1981 gcattcggct ggagtacgca aatcataccc ggcagcgaaa gcatggcagg tatcaatgca
     2041 gacgccgaca cgggatttat cttccacgcc gtcgataatc gccgcgagat gttcgaattt
     2101 aaaccctaag ttactgccct gaccggcggt gttttcaatc accgctgtta caccttgagt
     2161 tttatccagc gcaatgttga tggattcggc aatacgcgca aggcaatcct cttctgaaat
     2221 ctgcatcaga tggctgccag ggtggaagtt gagcaaagaa agccccagtt gttcgcaacg
     2281 ctgcatttca tctataaagg catcgcgcga tttttccaga gcttcagtga ccggatgtcc
     2341 gaggttaatc agatagctgt cgtggggaag aatttgcgcc gatgtgtagt gatatttttc
     2401 acaggctgct ttgaattcat cgatggtttg cgtcgtgagc ggtgcggcac gccactgacg
     2461 ttggtttttg gtgaacaagg caaacgcggt tgcgtcgatt tcggcggcgc gaattgcggc
     2521 atttgccaga ccgccagcag cactaacgtg cgctccaatg tatttcatgc gaggactcct
     2581 gttaaacccg ctggaggaaa acggtaatga tagcgggtta acaggagcaa gatgtagtgg
     2641 tttatgcgat gacgctttga atcacatagt taatcgcacc accaccaaca atcagccagg
     2701 caaacagtac cagtgccatc agcagaggtt tcgccccggc ttttttcagc gcgctgacgt
     2761 gagtggtcag acccagcgcc gccatcgcca ttgccagcag gaaggtatcc agcgttacca
     2821 gcatgttcac cacgctctgc ggtaacaggt ggaacgagtt aaagatggca acgacgatga
     2881 acaagatggc aaaccacgga atagtgattt tgcttttctc gccgctgttc gccccagaca
     2941 gctgtttaac acgcgccgcc agcaggatga ggaacggagc cagcatcatc acgcgcagca
     3001 ttttggaaat aactgctgcg ttttccgcat ccgggctgat ggcatgacct gccgccacca
     3061 cctgcgccac ttcgtgcaca gtagaaccaa tgtagatacc gaaagtttcc ggactaaacc
     3121 attgagacat cagcggatat atcgccgggt agaggaaaat cgcgacggtc ccgaagataa
     3181 caacggttgc aacagccacg gttactttac tggcttccgc tttcactacc ggctcagtcg
     3241 ccagtaccgc ggcagcacca cagatactgc taccggcacc gatcaaccag ctggtgtgct
     3301 tatccagacc aaacactttc tgccccagga agcaagccag caggaaggta ctggacagcg
     3361 tcaacacgtc aatgatgatc ccactgatac cgacatcggc aatttgcgag aacgtcagac
     3421 ggaagccata aagaatgata cccagacgta ataaatattg cttggcaaac agcacaccac
     3481 cgtcacagct tttccagatg tgcggataga tggtgttgcc taaaaccatc cccaacaaga
     3541 ttgcgagggt gagggcacta aacccggcac ccgcaaccgc gggaatggaa ccaccccaca
     3601 gggcgacccc ggtgataact gcactcaggg ctaaccccgg aataaaatgc cacagtgtac
     3661 gatgttgttt ctgtaaggtg atattcgtca taaccctctc cttataaccg ggcataaggt
     3721 tacgactaac tggtttaaaa ataaaattga ttatatattt ataattaatc tttataagtg
     3781 gtaagcgact atgcacatca ccctccggca gttggaagtt tttgcagaag tattgaaaag
     3841 tggatcaacc acccaggcgt cggtgatgct ggcgttgtcg caatcagcag tgagcgcagc
     3901 cttgaccgac ctggaagggc agcttggcgt gcaactgttt gatcgcgtgg ggaaaagact
     3961 ggttgttaat gaacacgggc ggctgctcta tccgcgtgcg ttggcattgc ttgaacaggc
     4021 ggttgaaatc gaacaactgt ttcgcgaaga caacggcgcg attcgtatct atgccagtag
     4081 taccatcggt aactacattc tgcctgcagt tatcgcccgt tatcgccatg attatccgca
     4141 gttgccgatt gaacttagcg ttgggaacag ccaggacgtg atgcaagcgg tgctggattt
     4201 ccgcgttgat attggcttta ttgaaggacc gtgccacagc actgaaatca tttctgaacc
     4261 gtggctggaa gacgagctgg tggttttcgc cgcgccgact tcgccgttgg ctcgtggtcc
     4321 ggtcacctta gaacagctgg ccgctgcgcc gtggatcctg cgtgaacgcg gttccggcac
     4381 gcgggagatt gtcgattatc tattgctgtc acatttaccg aagtttgaga tggcgatgga
     4441 attaggtaac tccgaggcaa tcaaacatgc ggtgcgtcat gggttgggaa ttagttgcct
     4501 gtcgcgacgg gtgattgaag atcaattgca ggcaggcaca ttaagtgaag ttgcggtccc
     4561 tctgccgcgc ctgatgcgta cgttgtggcg tatacatcat cggcaaaaac acctttccaa
     4621 cgcgctacgg cgctttctgg actattgcga tcccgcgaat ataccgcgtt aagttgctgt
     4681 acaagaacat gctggtgctg tgtcgatttc gtgacgcagc gccctcagca tgcattcgcc
     4741 agaaaagaga ttggctgctt tacttataat cccagggcga tcatgaaggt gtcttataac
     4801 cgtgtatttc tgccggaagg attgccaatc gtctgctaca atcgcgcctc atttttaaga
     4861 tggatagcat ttttgtatgg tttccgaaac taaaaccaca gaagcgccgg gcttacgccg
     4921 tgaattaaag gcgcgtcacc tgacgatgat tgccattggc ggttccatcg gtacaggtct
     4981 ttttgttgcc tctggcgcaa cgatttctca ggcaggtccg ggcggggcat tgctctcgta
     5041 tatgctgatt ggcctgatgg tttacttcct gatgaccagt ctcggtgaac tggctgcata
     5101 tatgccggtt tccggttcgt ttgccactta cggtcagaac tatgttgaag aaggctttgg
     5161 cttcgcgctg ggctggaact actggtacaa ctgggcggtg actatcgccg ttgacctggt
     5221 tgcagctcag ctggtcatga gctggtggtt cccggataca ccgggctgga tctggagtgc
     5281 gttgttcctc ggcgttatct tcctgctgaa ctacatctca gttcgtggct ttggtgaagc
     5341 ggaatactgg ttctcactga tcaaagtcac gacagttatt gtctttatca tcgttggcgt
     5401 gctgatgatt atcggtatct tcaaaggcgc gcagcctgcg ggctggagca actggacaat
     5461 cggcgaagcg ccgtttgctg gtggttttgc ggcgatgatc ggcgtagcta tgattgtcgg
     5521 cttctctttc cagggaaccg agctgatcgg tattgctgca ggcgagtccg aagatccggc
     5581 gaaaaacatt ccacgcgcgg tacgtcaggt gttctggcga atcctgttgt tctatgtgtt
     5641 cgcgatcctg attatcagcc tgattattcc gtacaccgat ccgagcctgc tgcgtaacga
     5701 tgttaaagac atcagcgtta gtccgttcac cctggtgttc cagcacgcgg gtctgctctc
     5761 tgcggcggcg gtgatgaacg cagttattct gacggcggtg ctgtcagccg gtaactccgg
     5821 tatgtatgcg tctactcgta tgctgtacac cctggcgtgt gacggtaaag cgccgcgcat
     5881 tttcgctaaa ctgtcgcgtg gtggtgtgcc gcgtaatgcg ctgtatgcga cgacggtgat
     5941 tgccggtctg tgcttcctga cctccatgtt tggcaaccag acggtatacc tgtggctgct
     6001 gaacacctcc gggatgacgg gttttatcgc ctggctgggg attgccatta gccactatcg
     6061 cttccgtcgc ggttacgtat tgcagggaca cgacattaac gatctgccgt accgttcagg
     6121 tttcttccca ctggggccga tcttcgcatt cattctgtgt ctgattatca ctttgggcca
     6181 gaactacgaa gcgttcctga aagataccat tgactggggc ggcgtagcgg caacgtatat
     6241 tggtatcccg ctgttcctga ttatttggtt cggctacaag ctgattaaag gaactcactt
     6301 cgtacgctac agcgaaatga agttcccgca gaacgataag aaataagttt cctcccttcc
     6361 ttgctaagcc ctctcaaccg agagggcttt ttcaattcca tttccctgac aaatcatgcg
     6421 gatataaaat ttaacatttg gattgataat tgttatcgtt tgcattatcg ttacgccgca
     6481 atcaaaaaag gctgacaaat cagaggctgt tccggctttc tgggatgatc acctgcatac
     6541 aaataagtcc accgcgatgc tgccgtacgc aaggggacgt gaagaaggtg tgagcgataa
     6601 cccattttat tttcgtagtt acctcatgga gatatggaat gtttaggttg aaccctttcg
     6661 tacgggtcag gctgtgtttg tccgctattt cttgtgcatg gcctgtgtta gcggtcgatg
     6721 atgatggcga aacgatggtt gtcactgcat cttccgttga acaaaacctc aaagatgcac
     6781 ccgccagtat cagcgtcatt acccaggaag acctgcagcg aaaaccggta cagaatctga
     6841 aggatgtcct caaagaagtg cctggcgtac aactgacgaa cgaaggggat aaccgtaagg
     6901 gcgttagtat tcgtggtctg gacagcagct acaccctgat tctcgtcgac ggtaaacgcg
     6961 ttaactcccg caatgccgtc ttccgccaca atgatttcga tctgaactgg atcccggtcg
     7021 attccatcga acgtattgaa gtggttcgtg gcccgatgtc gtcgctatac ggctccgatg
     7081 cgctcggcgg tgtagtgaat atcatcacca aaaaaatcgg tcagaaatgg tcgggtaccg
     7141 ttaccgtcga taccaccatt caggaacatc gcgatcgcgg tgatacctat aacggtcagt
     7201 tctttaccag tggaccatta attgatggtg tgctgggaat gaaagcttac ggcagcctgg
     7261 caaaacgtga aaaggatgac ccgcaaaact caacgaccac cgataccgga gaaatgccgc
     7321 gtattgaagg attctccagc cgcgacggca atgtcgaatt tgcctggaca ccgaatcaaa
     7381 atcacgattt tactgccgga tacggtttcg accgtcagga actcgctgga caaaaaccgc
     7441 ctggaacgcc agaactactc cgtcagccat aatgggcgtt gggattacgg caccagcgaa
     7501 ctgaaatact acggtgagaa agtcgagaac aaaaaccctg gcaacagcag cccgataact
     7561 tccgaaagca atacggtcga cggcaaatac acgttgccgc tgacggcgat taatcagttt
     7621 ctcacggttg gcggtgaatg gcgtcacgac aaacttagcg atgcggtgaa cctgaccggg
     7681 ggaaccagct ccaaaacgtc tgccagccag tacgcgctgt ttgtggaaga tgaatggcgg
     7741 atcttcgagc cgctggcgct gacgaccggc gtgcgtatgg acgatcacga aacctacggt
     7801 gaacactgga gtccgcgtgc ctacctggtt tataacgcca ccgacaccgt aacggtgaaa
     7861 gggggctggg cgacggcatt taaagcacct tctctgttgc aacttagccc tgactggacg
     7921 agcaattcct gccgtggcgc atgtaagatt gtgggtagcc cggatctgaa accagaaacc
     7981 agcgaaagtt gggagctggg gctttactac atgggtgaag aaggctggct ggaagggggt
     8041 gaatccagcg ttaccgtttt ccgtaacgat gtgaaagatc gtatcagcat cagccgtacg
     8101 tctgacgtca acgctgcacc gggctaccaa aactttgttg gttttgagac gggcgctaac
     8161 ggacggcgca taccggtatt tagctactac aacgttaaca aagctcgtat tcagggcgtg
     8221 gaaaccgaac tgaaaattcc gttcaacgat gaatggaaac tgtcgatcaa ctacacctac
     8281 aacgatggtc gtgatgtcag caacggcgaa aacaaaccgc tatccgatct gccgttccat
     8341 actgctaacg gtacgctgga ctggaaaccg ctggcgctgg aagactggtc attctatgtt
     8401 tctggtcact ataccgggca gaaacgcgcc gacagcgcga cggctaaaac accgggcggt
     8461 tataccatct ggaataccgg cgcggcctgg caggtgacta aagacgtcaa actgcgcgca
     8521 ggcgtgctga accttggcga caaggatctc agtcgtgacg actacagcta taacgaagac
     8581 ggacgtcgtt actttatggc agtggattat cgcttctgat gagaagatgc ccggcgaacc
     8641 gggcggactt tcacttcagt aaatactgcg catggaagcg caggtgatcc tctataaaag
     8701 aggcgatgaa gtagtaactg tgatcatatc ccggctgaat acgcagcgtc atcggccacg
     8761 ctttctggcg cgcggcttct gccagtaccg caggttgcaa ctggtcggca agaaactgat
     8821 cattatcgcc ctgatcgata agcgtcggga tcgcatcctg cgcgttactg gcatacatca
     8881 gcgcgcaact gtcccattcc agccatgcat ttttgtcctc acctaaatag ctgctaaacg
     8941 ctttgattcc ccacgggacg ctgcacggat tcacaattgg cgcaaaggcc gaaacgctgg
     9001 tgtatttacc cggatttttc agcgccataa tcagcgcacc gtgaccaccc attgagtgac
     9061 cgctaatggc gcagcggtcg ctgacattaa attgcgactg aaccagcgcc ggtaattcat
     9121 cgcgcagata atcatacatc cggtaatgcg tcgcccacgg cggttgcgtg gcattaagat
     9181 aaaagcctgc gccctggcct aaatcgtagc catcgtcgtt ggcaaccttt tcgccgcgcg
     9241 ggctggtgtc tggcatcacc agtacaatcc ccagttctgc cgccacgcgc tgggcacccg
     9301 ccttggtggt gaagttctcg tcattgcagg ttaatccgga aagccagtac agcactggtg
     9361 gcggggtgtg atcacgaggg ggtgggagaa agatactgaa cgtcatcggg cagtttaagg
     9421 tactggagtc gtgtcgccag cgttgctgcc agccttcaaa acagcggtgc tcttcgagca
     9481 tttccatgcg tggctccttg ttgtgttgtt tgcaatttct tcatcatacc gtttattcaa
     9541 tgtgctgtga gtaactttca cttccgtatt tgcataacga tgttttaaca tctgctgatg
     9601 aaaggcagcg gcaattacaa taattatcgc tgtgaatact ggattatgtg cgccgcctca
     9661 cgcacaataa tcaggctgta aatcagctta ataactttgc ccccacgcag ggcggaggcg
     9721 tcacacctgc aggagaaatc ataaatgcca tcactcagta aagaagcggc cctggttcat
     9781 gaagcgttag ttgcgcgagg actggaaaca ccgctgcgcc cgcccgtgca tgaaatggat
     9841 aacgaaacgc gcaaaagcct tattgctggt catatgaccg aaatcatgca gctgctgaat
     9901 ctcgacctgg ctgatgacag tttgatggaa acgccgcatc gcatcgctaa aatgtatgtc
     9961 gatgaaattt tctccggtct ggattacgcc aacttcccga aaatcaccct cattgaaaac
    10021 aaaatgaagg tcgatgaaat ggtcaccgtg cgcgatatca ctctgaccag tacctgtgaa
    10081 caccattttg ttaccatcga tggcaaagcg acggtggctt atatcccgaa agattcggtg
    10141 atcggtctgt caaaaattaa ccgtatcgtg cagttctttg cccagcgtcc gcaggtgcag
    10201 gaacgtctga cgcagcaaat tcttattgcg ctacaaacgc tgctgggcac caataacgtg
    10261 gctgtctcca ttgatgcggt gcattactgc gtgaaagcgc gtggcatccg cgatgcaacc
    10321 agtgccacaa caacgacctc tcttggtgga ttgttcaaat ccagtcagaa tacgcgccac
    10381 gagtttctgc gcgctgtgcg tcatcacaac tgattaaaag gcaggaacca tggagcgcaa
    10441 cgtaacgctc gattttgttc gcggcgtcgc cattctgggg atcctgctat taaacatcag
    10501 cgcctttggg ctaccaaagg cggcttatct caatcccgcc tggtacggcg ctattacgcc
    10561 gcaggatgca tggacctggg catttctcga tctcatcggc caggtgaaat tcctcacgct
    10621 ttttgcgctg ctgtttggtg cgggcctgca aatgttgctg ccccgtggca gacgctggat
    10681 ccagtcgcgg ttaacgctgt tagtcttgct gggttttatt cacggtttat tgttctggga
    10741 cggcgatatt ctgctggctt acgggctggt gggcttaatc tgctggcggc tggtgcgcga
    10801 tgcgccatcg gtaaaaagcc tgtttaatac aggcgtcatg ctttatctgg tggggcttgg
    10861 cgttttgctg ttattggggc tgatttccga cagccagacc agccgcgcct ggacgccgga
    10921 tgcatcggct attttgtatg aaaaatactg gaagcttcac ggcggcgttg aagcgatcag
    10981 taatcgtgcc gatggtgttg gcaacagttt actggcactg ggcgcacagt atggctggca
    11041 actggcaggg atgatgctca ttggtgcggc gctgatgcgc agcggctggc tgaaagggca
    11101 gttcagctta cgtcactatc gtcgtactgg ttttgtgctg gtggcgattg gggtgaccat
    11161 taaccttcct gccatcgccc tgcaatggca gctggactgg gcgtatcgct ggtgtgcctt
    11221 cttacttcaa atgccgcggg aactgagtgc gccgtttcag gcgattggct atgcgtcgct
    11281 gttttatggc ttctggccgc aattgagccg ctttaagctg gtgcttgcga tcgcctgcgt
    11341 cggacggatg gcgctgacca actatctatt gcaaacgctg atttgtacca tgctttttta
    11401 ccacctcggt ttgtttatgc attttgaccg cctggagctg ctggcgtttg ttattccggt
    11461 atggctggcg aatatcctct tctctgttat ctggctgcgt tacttccgcc aggggccggt
    11521 ggaatggctc tggcgtcagt taactttgcg tgctgccgga acggcaatat ctaaaacatc
    11581 aagataacga tctggatcac attcgttaac aaaacggctg taaccgtttc cattgctgtg
    11641 actcgattca cgaagtcctg tattcagtgc tgacaaaata gccgccagca agcagtcatt
    11701 tactgcaatc tcataacagg tagtgaatat gatcaccatt cgtgatgtag cgcgtcaggc
    11761 tggcgtctct gtggcaacgg tttcccgggt gctcaataac agcacgctgg tcagtgccga
    11821 cacgcgtgaa gcagtaatga aagccgtgag tgagctggat tatcggccaa acgccaatgc
    11881 ccaggcgctg gcaactcagg ttagcgacac cattggcgtg gtggtgatgg acgtttctga
    11941 tgcgtttttc ggcgcgctgg taaaagcggt ggatctagtc gctcagcagc atcagaaata
    12001 cgtgctaatc ggcaatagct atcatgaagc ggaaaaagag cgtcacgcca ttgaggtgtt
    12061 aattcgccag cgttgtaatg cgttgattgt tcactcaaaa gcattgagtg acgatgaact
    12121 ggcgcaattt atggataaca ttcccggtat ggtgttaatc aaccgcgttg tgccggggta
    12181 cgcccatcgt tgcgtttgcc tggataatct cagcggtgcc cgaatggcga cgcgcatgtt
    12241 gctgaataac ggtcatcaac gtattggtta tctttcttcc agtcacggca ttgaagatga
    12301 cgccatgcgt aaagcaggct ggatgagtgc gttgaaagag caggatatta ttccgccgga
    12361 aagctggatt ggcactggta cgccggacat gccgggcggt gaggcggcga tggttgaact
    12421 gctggggcgc aatctacaac ttaccgctat atttgcttat aacgacaata tggccgctgg
    12481 cgcactgaca gcattaaaag ataatggcat tgcgattccg ttacatctct caatcatcgg
    12541 tttcgatgat attcccatcg cccgttacac cgacccgcaa ttaacgaccg tgcgttatcc
    12601 cattgcttca atggctaaat tagccaccga actggccttg cagggggcag caggcaatat
    12661 tgatcctcgt gccagccact gttttatgcc gacgttagtg cgtcgccatt ctgtcgcaac
    12721 gcgccagaat gcggcggcga tcactaactc aacaaatcag gcgatgtaac cgctttcaat
    12781 ctgtgagtga tttcacagta tcttaacaat gtgatagcta tgattgcacc gttttaacgt
    12841 tgtaacccgt atgtaacagt gaataatcac tttcaccgag gtaatagcgt cataacaaca
    12901 attaaagccg ttttctggag cgttaccggg catggaagaa cgaattttaa aaagtgagct
    12961 tcggcgttca gtaacacttc attaactcta ctgccctgcc gagcatttat ctcaagcact
    13021 accctgcata agaaaaaccg gagataccat gaataagaag gtgttaaccc tgtctgctgt
    13081 gatggccagc atgttattcg gtgccgctgc acacgctgct gatactcgca ttggtgtaac
    13141 aatctataag tacgacgata actttatgtc tgtagtgcgc aaggctattg agtaagatgc
    13201 gaaagccgcg ccagatgttc agctgctgat gaatgattct cagaatgacc agtccaagca
    13261 gaacgatcag atcgacgtat tgctggcgaa aggggtgaag gcactggcaa tcaacctggt
    13321 tgacccggca gctgcgggta cggtgattga gaaagcgcgt gggcaaaacg tgccggtggt
    13381 tttcttcaac aaagaaccgt ctcgtaaggc gctggatagc tacgacaaag cctactacgt
    13441 tggcactgac tccaaagagt ccggcattat tcagggcgat ttgattgcta aacactgggc
    13501 ggcgaatcag ggttgggatc tgaacaaaga cggtcagatt cagtccgtac tgctgaaagg
    13561 tgaaccgggc catccggatg cagaagcacg taccacttac gtgattaaag aattgaacga
    13621 taaaggcatc aaaactgaac agttacagtt agataccgca atgtgggaca ccgctcaggc
    13681 gaaagataag atggacgcct ggctgtctgg cccgaacgcc aacaaaatcg aagtggttat
    13741 cgccaacaac gatgcgatgg caatgggcgc ggtagaagca ctgaaagcac acaacaagtc
    13801 cagcattccg gtgtttggcg tcgatgcgct gccagaagcg ctggcgctgg tgaaatccgg
    13861 tgcactggcg ggcacagtac tgaacgatgc taacaaccag gcgaaagcga cctttgatct
    13921 ggcgaaaaac ctggccgatg gcaaaggtgc ggctgatggc accaactgga aaatcgacaa
    13981 caaagtggtc cgcgtacctt atgttggcgt agataaagac aacctggctg aattcagcaa
    14041 gaaataagac tgattgggcg cagtcgttta ctgcgccctt attgtatggc caacaaggta
    14101 aaattatatg gtcagctcaa cgactccgtc ttccggggaa tacttgttgg aaatgagcgg
    14161 tatcaacaag tcctttcctg gtgttaaggc acttgataac gttaatttaa aagtccggcc
    14221 acattctatc catgcattaa tgggggaaaa cggtgcagga aaatcgacat tattaaaatg
    14281 cctgtttggt atttatcaaa aagactccgg caccatttta ttccagggta aagagatcga
    14341 tttccattcc gccaaagagg cactggaaaa tggtatttcg atggtacacc aggagttaaa
    14401 cctggtatta caacgttcgg tgatggataa catgtggctg aggcgatatc ccaccaaagg
    14461 catgtttgtc gatcaggaca aaatgtaccg cgaaaccaaa gcgatttttg atgaactgga
    14521 tattgatatc gatccgcgtg cgcgcgtcgg cacattatcc gtttcgcaaa tgcagatgat
    14581 cgaaatcgcc aaagcgtttt cctataacgc gaaaattgtg attatggatg aaccgacttc
    14641 ttcgttaacc gaaaaagagg tcaatcatct gttcactatt attcgtaaat taaaagagcg
    14701 cggctgcggt attgtttata tctcgcataa aatggaagaa atcttccagt tatgtgatga
    14761 agttaccgta ttgcgcgacg gtcagtggat cgccaccgaa ccgctggcag gactgacgat
    14821 ggacaagatc atcgccatga tggttgggcg ttctcttaat cagcgttttc ctgacaaaga
    14881 aaacaagccg ggcgaagtca tcctcgaggt gcgtaaccta acgtcactgc gccagccgtc
    14941 gattcgcgat gtctcgtttg atctgcataa aggggagatc ctcggtattg ccgggctggt
    15001 gggggcgaaa cgtaccgata ttgttgagac gttatttggt attcgcgaga aatcggctgg
    15061 caccattacg ttgcacggca aacagatcaa taaccataat gccaacgaag ccataaacca
    15121 cggatttgca ctggtaactg aggagcgccg ctcaacggga atttatgcct atctggatat
    15181 tggttttaac tcgttaattt ccaatattcg caactacaaa aataaagttg gtttactgga
    15241 taaatcgcgg atgaaaagcg atacccagtg ggtgattgat tcgatgcggg taaaaacacc
    15301 ggggcatcgg acgcaaattg gttcgctctc aggtggtaat cagcaaaagg tgattattgg
    15361 gcgctggcta ctaacgcaac cagaaatatt aatgctcgat gaaccgacgc gcggtattga
    15421 tgtcggggcg aagtttgaga tctatcagtt aattgccgaa ctggcgaaga aaggcaaagg
    15481 gattattatt atctcctctg aaatgcctga gttgttaggg ataacagacc gtattctggt
    15541 catgagcaat ggtctcgttt ccggaattgt cgacacaaaa acaacaacgc aaaacgaaat
    15601 tctgcgtctt gcgtctttgc acctttaaga ttaggggctt cccatgagtg cgttaaataa
    15661 gaaaagtttt cttacttacc tgaaagaggg cggtatttac gtcgttcttt tagttttgct
    15721 ggcgattatt attttccagg acccaacatt tttaagtctg ttgaacttaa gtaatattct
    15781 cacccagtca tcggtgcgta ttattatcgc gctcggtgtg gcagggttaa ttgtcaccca
    15841 ggggaccgac ctttctgcgg ggcgtcaagt agggctggca gcagtggtgg cagcgacatt
    15901 attgcagtcc atggataacg ccaataaagt gttcccggaa atggcgacga tgccgattgc
    15961 gctggttatt ctgattgtct gtgccattgg tgcggtgatc ggtttgatca acggtctgat
    16021 tatcgcttat ctcaacgtta cgccgttcat taccacgctc ggcacgatga tcatcgtcta
    16081 tggcatcaac tcgctctatt acgactttgt cggggcgtcg ccaatttctg gttttgacag
    16141 tggcttctct acctttgctc agggctttgt cgcgctgggg agtttccgtc tctcttacat
    16201 caccttctac gcgttgattg cggtggcgtt cgtctgggtg ttgtggaaca aaacccgctt
    16261 cggtaagaac atttttgcca ttggcggtaa cccggaagcg gcaaaagtat ctggtgtcaa
    16321 cgtcggcctg aacctgctga tgatctacgc gttgtctggc gtgttctatg cctttggcgg
    16381 gatgttagaa gccggacgta tcggctctgc caccaacaac ctcggcttta tgtatgagct
    16441 ggatgctatc gcggcgtgcg tggtaggcgg tgtatcgttc agcggcggtg tggggacggt
    16501 gattggcgtg gtgaccgggg taattatttt taccgtcatc aactatggcc tgacgtatat
    16561 cggcgtaaac ccatgctggc agtacatcat caaaggggcg attattatct tcgccgtagc
    16621 gctggattca ctgaaatacg cgcgtaagaa atgatgtgaa tgtggtccgc attcggtcat
    16681 aaacgcacat aacatcatga tctgtgtggt tttgtaggcc ggataaggcg ttcacgccgc
    16741 atccggcaac aggagccaaa tgccggatgc aacgctggcg cgttttatcc ggcctacaat
    16801 aagctcaaca tactgatttg tatggttttg taggccggat aaggcgttca agccgcatcc
    16861 ggcgacagga accaaatgcc ggatgtgacg cgggttctac aacgttaccg ggtgttcttt
    16921 ctcgcctttc ttaaacttca cttccccgag ctcaatacaa cccaccgggc agacgtgacc
    16981 acaaagcaga caacccacac atttctcggt attacaatgc ggtgtgcggg ttttctcgct
    17041 ccattccatc gcctggtgac cgccgtcgta acaggaaata taacagcgtc cacagccaac
    17101 acatttgtca agattgatac ggggatagac aatataactg cggtctaaat cttccgccgg
    17161 gacaatattg ttattcgcca gacctaccat ctcctgcaac gaatcaaatc cctgatcggc
    17221 gagataatgc gataacccgc tcgccatatc ttctacgatg cgattgccgt actgcataat
    17281 gccggtggtg acctgtaacg ttgctgcgcc gagcaataaa aactccgccg catcctccca
    17341 ggtttcaatg ccgccgatac cgctgattgg gaaatcgcgc agttctggat gggtgcgcat
    17401 ttgctgaatg aagcgcaggg cgatcggttt taccgcttta ccggaatatc cggaaatact
    17461 cgatttaccg ttaacgatcg gcataccgat tttctgatta agatcgatat tggtgatgga
    17521 tttaacggtg ttaattgccg caatgccatc tgcgccgccg cgcttcgccg ccagcgccac
    17581 ttcgcacata tcaccgatat tcggcgtcat cttcgccagc attggcagcg tggaaccgcg
    17641 tttcaccgcc cgacaatatt tttctaccag caccggactt tgcccgacat cgctacccat
    17701 cgcatgagaa gtcatttgcg gacaggagaa gttacactcg atcatatccg cgccagctcc
    17761 tcccattgct gctcattttc ccccatgatc ga
//
LOCUS       DAJVUP010000080        17692 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.080, whole genome shotgun sequence.
ACCESSION   DAJVUP010000080 DAJVUP010000000
VERSION     DAJVUP010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17692
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.080"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..224)
                     /locus_tag="OQQ75_002440"
     CDS             complement(<1..224)
                     /locus_tag="OQQ75_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HCS1976729.1"
                     /translation="MTWNLLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINIL
                     FTSRQMIIETFICPVSSISNPDEFNTFLLR"
     gene            complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="OQQ75_002441"
     CDS             complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="OQQ75_002441"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HCS1976730.1"
                     /translation="MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALE
                     AQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDG
                     VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRT
                     MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM
                     AGSVSSLNVSVATGICLFEAVRQRS"
     gene            complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="OQQ75_002442"
     CDS             complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="OQQ75_002442"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HCS1976731.1"
                     /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVEL
                     HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE
                     GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
                     GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM
                     GTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA
                     RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLP
                     EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG
                     DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAECRIERIEQT
                     QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL
                     PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF
                     TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD
                     EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY
                     RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE
                     KAKKGDAGKKGGKRRLVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIA
                     AATKAKRAAKKKVAE"
     gene            complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="OQQ75_002443"
     CDS             complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="OQQ75_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing transcriptional repressor
                     NsrR"
                     /protein_id="HCS1976732.1"
                     /translation="MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVK
                     IINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPAC
                     RLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE"
     gene            complement(4373..5671)
                     /gene="purA"
                     /locus_tag="OQQ75_002444"
     CDS             complement(4373..5671)
                     /gene="purA"
                     /locus_tag="OQQ75_002444"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HCS1976733.1"
                     /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL
                     VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSE
                     ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE
                     KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF
                     VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA
                     GPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD
                     VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL
                     PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA"
     gene            complement(5775..5972)
                     /locus_tag="OQQ75_002445"
     CDS             complement(5775..5972)
                     /locus_tag="OQQ75_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HCS1976734.1"
                     /translation="MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRR
                     FGGGLVVAGVVVYYMLRKTIG"
     gene            complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="OQQ75_002446"
     CDS             complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="OQQ75_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HCS1976735.1"
                     /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNK
                     PLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR
                     YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA
                     GTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE
                     VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD
                     AEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
                     "
     gene            complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="OQQ75_002447"
     CDS             complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="OQQ75_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HCS1976736.1"
                     /translation="MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDI
                     FRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKE
                     AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE
                     MNVQYRVTYPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR
                     ELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQ
                     PRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKV
                     LGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASN
                     TSSTSQGDIMDQRRANAQRNDYQRQGE"
     gene            complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="OQQ75_002448"
     CDS             complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="OQQ75_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HCS1976737.1"
                     /translation="MFDRYDAGEQAVLVHIYFTKDKDMEDLQEFESLVSSAGVEALQV
                     ITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT
                     EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ
                     ATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEE
                     NKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE
                     WMEEDGSVSLQVRMPIVDWRRLCKQEPALIDYLI"
     gene            complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="OQQ75_002449"
     CDS             complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="OQQ75_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HCS1976738.1"
                     /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
                     "
     gene            complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="OQQ75_002450"
     CDS             complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="OQQ75_002450"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HCS1976739.1"
                     /translation="MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA
                     LIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIP
                     LLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARI
                     HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRF
                     HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATR
                     QLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG"
     gene            complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="OQQ75_002451"
     CDS             complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="OQQ75_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HCS1976740.1"
                     /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
                     DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASI
                     SSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF
                     LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGT
                     AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQAC
                     EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL
                     ETPLPLDDEPQPAPRSIPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPN
                     AQPGYQKQQGEVYRQLLQTPAPMQKLKAPEPQEPALAANSQSFGRVLTIVHSDCALLE
                     RDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALA
                     ELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLM
                     SEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKDE"
     gene            complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="OQQ75_002452"
     CDS             complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="OQQ75_002452"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiB"
                     /protein_id="HCS1976741.1"
                     /translation="MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFI
                     GDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDL
                     TENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP
                     FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNV
                     TIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNR
                     SATGASVWVLSNRRANSEMASWLEQHEKHSELLGGAGDVLANSQSDPYLSQAVLDLQF
                     GHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEE
                     RLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN"
     gene            complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="OQQ75_002453"
     CDS             complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="OQQ75_002453"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HCS1976742.1"
                     /translation="MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTF
                     SRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFAND
                     AICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARLAG"
     gene            complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="OQQ75_002454"
     CDS             complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="OQQ75_002454"
                     /EC_number="4.2.1.136"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HCS1976743.1"
                     /translation="MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLR
                     AGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLFAQESDKPLP
                     EEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSH
                     PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKPGLLTGKARDVTGQLHFDSLG
                     LDSWLAGQETKIQRFSAEQLSHWLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEA
                     ALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSLTESLEWADVVVIGPGLGQQE
                     WGKKALQKVENFRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES
                     DRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDALGIIDAGNAGMASGGMGDVLSGIIGA
                     LLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVTDKNHD
                     ESSNSAP"
     gene            16292..17431
                     /gene="queG"
                     /locus_tag="OQQ75_002455"
     CDS             16292..17431
                     /gene="queG"
                     /locus_tag="OQQ75_002455"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HCS1976744.1"
                     /translation="MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWL
                     DKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVS
                     RYALGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKH
                     SLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR
                     CISYLTIELEGAIPEELRPLMGNRIYGCDDCQPICPWNRYSQLTTEEDFSPRKPLHAP
                     ELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEH
                     PLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA"
     gene            complement(17414..17467)
                     /locus_tag="OQQ75_002456"
     CDS             complement(17414..17467)
                     /locus_tag="OQQ75_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976745.1"
                     /translation="MRFYFYSQAVDESGVTR"
BASE COUNT         4068 a         5013 c         4393 g         4218 t
ORIGIN      
        1 tttcttaata agaaggtatt aaattcatct ggattgctga tactacttac cggacaaata
       61 aaggtttcga taatcatttg gcgggaagta aaaagaatat tgatttgcaa atcgccataa
      121 tcattcattt taataattaa tgcgttctcg ctatttgtta catcaatatt ttgttcaggt
      181 acagtttgca gcgccgtcgc cagcgccaac agattccatg tcatatatta ttccatatag
      241 atttagttta aatattaata aaatgaatat ttgcagtacg taattatctt accagctata
      301 gacaaaaaaa aaccatccaa atctggatgg cttttcataa ttcagaggaa ctagctgcgc
      361 tgacgcaccg cttcaaataa gcaaattccg gttgcaaccg aaacgttcag agaagaaaca
      421 cttcctgcca ttgggatgct gatcaactca tcgcaatgtt cacgggtcag gcgacgcata
      481 ccttcacctt ccgcgcccat caccagcgcc aggcgtccgg tcattttgct ctgatagagt
      541 gtatgatccg cctcacctgc cgtaccgacg atccagatat tctcttcctg caacatacgc
      601 atggtacgca ccaggttagt cacccgaatc agcggaacgc tttctgccgc gccacaggcc
      661 acttttttcg ccgtggcgtt gagctgggcg gagcgatctt tcggcacaat caccgcatga
      721 acaccagcgg catctgcgct acgcaggcac gcgccgaggt tatgcggatc ggttacaccg
      781 tcaaggatca gcaggaacgg ctgatcgagc gaagcgatca gatccggcaa atcattttcc
      841 tggtactgac gtcctggctt cacgcgggcg ataatgccct gatgcacggc accgtcgctt
      901 ttctcgtcga gatattggcg gtttgccagc tggataacca cgccctgggc ttcgagggcg
      961 tgaatcagcg gtaacagacg tttatcttca cggcctttta aaataaagac ttcctgaaaa
     1021 cgttcagggg cgcgctccag cagggcctgc actgcgtgga tgccgtaaat catttcgctc
     1081 attaatgtac tcgttgttta cgttttgcct gatgcactac gtttatccgg cctacatgat
     1141 ctctgcaata tattgaattt gcgtgattat gtaggccgga taaggcgttc acgccgcatc
     1201 cggcatgaac aaagcgcatt ttgtcagcaa tctaaccctc ttctgtttga agagggtaat
     1261 gatcactctg ccactttttt cttcgccgca cgcttcgctt tggtcgctgc agctattttc
     1321 tgcgttttcg ccgatggctt tttcgctttt ctcgcgtctt tcttcgctgc tttcggcttc
     1381 gtttttttct caccgcggaa ggcgctgtct ggctcaaagt ttaccttttt accgaccaga
     1441 cgacgcttgc cgcctttttt acctgcatcg ccttttttcg ctttctcgcg cgccgtttta
     1501 ccgacgttgc gcggtgcgcg ttcgctggag atcaggctaa agtcgatttt gcgctcgtcc
     1561 atattaaccg cttcgacgcg aacttccacg cgatcgccca gacgataagt ctggccgctg
     1621 gattcaccca tcagccgttg ccctacctgg tcaaagcgat agtagtcatt gtccagcgaa
     1681 gagacatgga ccagaccatc aatgaataag tcgtccagac ggacaaagaa tccaaagcca
     1741 gtgacgctgg aaattacgcc tttaaagacg ttacctacct ggtcgagcat gaagtcacac
     1801 ttcagccagt cagccacatc gcgcgttgct tcgtcggcac gacgttccgc catcgaacag
     1861 tgctgaccca gttgcagcat ttcttccatc gaataatggt agccgccggt ttcagtggtg
     1921 ttgccctgat gcccctgctc tttcgccagc agatatttaa tggcgcggtg cagcgtcagg
     1981 tctggataac gacgaatcgg cgaagtaaag tgcgcatagg actgcaatgc caggccaaag
     2041 tgaccacggt tttctggatc gtaaatcgcc tgtttcatcg agcgcagcag catggtttgc
     2101 agcatttctg catcaggacg atcggcaacc gactccagca gctccgcgta gtcacgcggt
     2161 tccggcttgt taccgcccgg cagttccagc cccagctccg ccagtactga acggaaagag
     2221 gtaatcgctt cggtgctcgg cttgtcgtga atacggaaca atgctggttc tttggctttc
     2281 tcaacgaaac gcgccgccga gatattcgcc agaatcatgc actcttcaat taacttgtgt
     2341 gcgtcgttac gctgagtctg ttcgatacgc tcaatacggc attcagcgtt gaaaataaac
     2401 ttcgcttctt cgctctcaaa tgagatcccg ccacgttctt cacgggcttt atccagcact
     2461 ttatagaggt tatgcaactc ttcgagatgc ttaaccagcg gagcgtactg ctcgcgcaga
     2521 tcctgatcgc cctgcagaat atgccagact ttggtgtagg tcagacgcgc gtgagagctc
     2581 atcaccgctt cgtagaattt gtagcccgtc aggcggcctt tcgacgaaac cgtcatctcg
     2641 cacaccatac acaggcggtc tacctgcgga ttgagcgagc acagaccgtt agagagcact
     2701 tccggcagca tagggataac ctgcgaaggg aagtacaccg acgtaccacg attacgcgct
     2761 tctctatcca gcggcgttgg cggacgcaca tagtagctga cgtcggcaat cgcgacccat
     2821 aaacgccagc cgccgccgcg ttttttctcg cagtaaaccg catcgtcaaa gtcacgggcg
     2881 tcttcgccat caatggtgac cagcggtaaa tcgcgcaaat cgacacggcc cgcttttgct
     2941 tcttccggca cttcttcttt cagcccggca acctgttgct caacagcctg cggccagatg
     3001 tacggaattt catgggtacg caaagcgata tcaaccgcca tgccggtgcc catattgtcg
     3061 cccagcactt cgacgatttt acccaccgct ttggtacggc gagtcgggcg ttgggtcagt
     3121 tcaacaacca ccacaaagcc catccgcgcg cccatgatct gatcgggcgg gattaagata
     3181 tcgaagctca gacggctatc gtcaggaacc acaaagccga cgcccgcttc ggtaaagtag
     3241 cgaccaacaa tctggctggt ttttggcacc agtacgcgga caatacgcgc ttcacgacga
     3301 cctttacggt cagcacccag cggctgagcc agcacctgat cgccatgaat gcaggttttc
     3361 atctgctcgc tggagagata caaatcatct ttacgccctt caacccgcag aaagccgtag
     3421 ccatcacggt ggccaataac ggtacctttc accaggtcga ggcgttccgg cagcgcatag
     3481 cactgacgac gagtgaagac cagttgacca tcgcgctcca tcgcgcgcag gcggcgacgc
     3541 aggccttcaa gctgctcttc gccttcaatg tgcagttcta ccgccagctc atcacggctg
     3601 gccggttttt cacgtttggt taaatgttcg aggataaatt cccgactagg gatgggattc
     3661 gcgtattttt cagcttcgcg ttcctggaaa ggatcttgtg acatctcggt tcctccgttg
     3721 tcatctctga tgaagatttt cgtcactcca ccagcaataa tttataaagc ggttgattct
     3781 cttcaaccaa atcggcaagc gtgtagttat ccagttccgt aagaaaactt tgcacggcct
     3841 tagaaagcgc ctgtttcaac cgacaggcag gtgtaatgtg gcaaaactca ctgctgcaat
     3901 tcaccagcga taagggctcc agctcgcgca ccacatcacc aatacgtatc gcactcgccg
     3961 gtttacccag gcgaatgccg ccattttttc cacgaacagc agtcacgtag ccggcacgac
     4021 taagttgatt gattattttg accatatgat tacgggagac gccgtagacg tcagtcactt
     4081 cagaaatact ggtcatccgc ccttctggca atgacgccat gtagatcagc gcacgtaatc
     4141 cgtaatcagt gaaactcgtt aactgcacat caacctcaaa agggaaatcg ggaaaaaata
     4201 catttatatt gatgataaac cagccacaag ctgtgtcgct aatttatttc agttcgggga
     4261 aggaaaaaag cgaggattta acactgtgtc ggatagcgta atggcttaac cgacacagca
     4321 atgtatcaca ctgttagccc ggcaggcaaa atatctgcca ggcgtaccag aattacgcgt
     4381 cgaacgggtc gcgcagaatc atagtttcag tacgatccgg accggtagag atgatatcga
     4441 tcggcacacc ggtcagctct tcaatacgct tgatgtagtt cagcgccgcc tgcggcagcc
     4501 cgctacgatc tttcacgccg aaagtggatt cagaccagcc cggcatggtt tcgtaaatcg
     4561 gctctacacc tttccagtcg tcagctgcca gcggagtggt agtcacttcg cgaccatccg
     4621 gcatacggta agccacgcag agtttaacct ctttcaggcc atccagaacg tccagtttag
     4681 tcaggcagaa gccagacagg gagttcagct gtaccgcacg acgaacggca acggtgtcca
     4741 gccagccggt acgacgacga cgacccgtcg ttgcgccgaa ttcgttaccc tgcttgcaga
     4801 ggaactcgcc agtttcatca aacagttcgg tcgggaaagg acctgcaccc acacgagtgg
     4861 agtaagcttt gaggataccc agaacgtaat caacataacg cgggcccagg ccggaaccgg
     4921 tcgccacgcc accagcagtg gtgttggaag aagttacgta cggataagta ccgtggtcga
     4981 tatccagcag cgtaccctgc gcaccttcaa acatgacgaa atcgccacgc tgacgcgcct
     5041 ggtcgagcag gtcagaaacg tcaaccacca tagaagtcag gatgtcggca acagccatcg
     5101 tatcatccag aactttctgg taatcaaccg cttcagcttt gtagtagtta accaactgga
     5161 agttgtgata ttccatcact tctttcagtt tttcagcgaa ggtttctttg tcgaaaaggt
     5221 cgccaacacg cagaccgcga cgtgccactt tatcttcata agcaggcccg ataccacgac
     5281 cggtggtgcc gatcgctttc gcgccacgcg ctttctcacg cgcgttatcc agcgcaacgt
     5341 gataatcaag gatcagcgga catgcttcag acagcagcag acgctcacga acggggatgc
     5401 cacggtcttc cagttctttc atctctttca tcagcgcggc cggagacagc acaacaccgt
     5461 taccgatgat gctggttaca ttctcgcgga gaatacctga tggaataaga tggagaacgg
     5521 ttttttcacc gttgattacg agagtatggc ctgcgttgtg accgccctgg tagcgtacaa
     5581 catatttagc ccgttcagtc agaagatcga cgatcttacc tttaccttcg tcaccccatt
     5641 gggtgcccag tacgacgacg ttgttaccca tttttcaaaa tcaccgtttg cttaaaaatg
     5701 gattctacca tcgctttttc agagttacag cactttttgc actcaaaaat gacctcgatc
     5761 agtctgtttt ttgttcagcc aatcgttttc ctcaacatgt agtagaccac aacgcccgca
     5821 accacaagtc caccgccaaa acgacgtaaa atattatcgg gcaaattggt catcgcagag
     5881 atcatcttct tccatgcctt cgggtaaagc atcggcccta aaccttccag taccaaaacc
     5941 agggcaagcg ccagccagat tgtcgaattc attcattatc cttatagaaa aagaaaacca
     6001 ccgacatccc tgaggatgcg gtggctttat tgacctgtac cgcagtcgtt atattaacgc
     6061 gttgcggaag tcggcgtctt catgtagcgg aagaaatcgc tatccgggct catgaccatc
     6121 acgtcctgat tgccagagaa gctgttctca taagcacgca ggctacggat gaatgcgtag
     6181 aagtccggat ctttactgaa tgcatcagca aacagtttgg ctgcttcggc atcgccttca
     6241 ccacgcatga tgcggccctg acgctcagct tctgccagcg ttctggtcac ttcatagtcg
     6301 gcagtcgcgc gcagtttttc cgcttcttcc tgaccttgtg aacggtgacg acgcgctacc
     6361 gcttcacgct cggcgcgcat acggttgtag atcgcttcag acacttcggt cggcaggttg
     6421 atctgcttga tacgcacatc gacaacttca atacccagcg ccgccatact gttcgggttg
     6481 atgaccggaa ctttgccctt cgtctcagcc gttacgcgct ctgccgcttc ggcaatggcg
     6541 ttatctgctg ccggggtagt aacttcatct tctgtacccg cagaaccgga gttcagcgcg
     6601 tcacgtactt cgagggtcag acgaccacgg gaatcagtga cgatatcttt cacgtccagg
     6661 cgaccaattt cagaacgcag acggtcagag aacttacgtt tcaacagcac ttccgcttgc
     6721 gaaatgtcgc caccacccgt tgccaggtag taacggctga aatcgctgat gcgccatttg
     6781 atgtaagagt cgacgatcag gtctttcttc tctttggtca caaagcggtc ggcctggttg
     6841 tccatggtct gaatacgtgc gtcgagcatt ttcaccgttt caatgaacgg tatcttgaaa
     6901 tgcagacccg gctcataaac cagaggtttg ttgtcatcgt cacgcagtac cttaccaaaa
     6961 cgcagcgtaa taccgcgctc accttctttg acgacaaaga cagacatgta aagcactacc
     7021 agcacgatga tgataatcgc gataactgac ttacgcatcg ttattccccc tgacgctggt
     7081 agtcgttacg ctgcgcgttg gcgcggcgtt ggtccataat atcgccctga ctggtggacg
     7141 acgtgttgct tgctccactg gttgtggagg aagaggctgg cggcaaacgc agcagattgc
     7201 tggcaccgtt atcgctcttc gccgcagggg cgttaccacc tttcagcatc tggtctaacg
     7261 gcagaaccat caggttgcca cctttatcgt taaccagcac tttgcgggtg ttacccaaca
     7321 ctttttccat cgtctcgata tacagacgct cgcgagtaat ttccggcgcg gctttatatt
     7381 ccggcagaag tttagcaaag cgcgccactt caccctgagc ttccaggatg gtctgggcct
     7441 tgtacgcacg cgcctcttcg aggatacgtt gcgcctgacc gttcgcacgc ggctgaactt
     7501 cgttggtata cgcttctgct tcacgaatgt attgctgttc gttttcacgc gcggcaatcg
     7561 catcgtcaaa cgccgctttt acttcttccg gcggacgagc agcctggaag ttgacgtcca
     7621 gcagagtgat gcccatgtca tacggacgaa tcgtctcttc cagttcgcgc tgggtatcgc
     7681 tacgaatcac ggtacgacct tccgtcagaa tgcggtccat ggtgtattta ccgataaccc
     7741 cgcgcagggc gctgtcggta gcctgacgca ggctgtcatc cgggctggtc acgctataca
     7801 gatatttttc cggataggta acgcggtact gcacgttcat ctcaacgcgc actacgttct
     7861 cgtccgacgt cagcatcaca ccggaagcgg ccagttcacg cacggcttcc acgtttaccg
     7921 gtttgacttc gtcgataaac gtcggtttcc agttcagacc cggctcaacc agatggctga
     7981 atttaccaaa gcgtgttacc acgccgcgtt cggcttcttt aatggtatag aaaccactgg
     8041 ccgcccagat aatgacaatc gctgccgctg cgatggtaac gacacgaccg ccaagctgcg
     8101 ggcgcgggcc ttgcgatgaa ctgccaccgc cagatccggt gcctttaccg ccgcccagac
     8161 caccgagctt tttgctcagt ttgcggaaga tatcatctaa atcaggtggc ccttgatcgc
     8221 gaccgccttt gtttccattt ccctcagagt tgccgccagg tttgctgctt ccccacgggt
     8281 cgcggtcttg tccgttatta ccgggctgat tccacgccat gtttgtgctc catatttgtt
     8341 atgcggtgat ccctgttgtc tttcgacgcc agaggatatg actccacgct tcagacgcta
     8401 cgccgttaga tcaggtaatc gatcaacgcc ggttcttgtt tacagaggcg acgccagtca
     8461 acgatcggca tacgaacttg cagacttacg ctgccgtcct cctccatcca ctctttttct
     8521 attgcctgaa gctgataaaa acgacttctc agacgccctt cctgcggtgg cagacgcaat
     8581 gtatgctgcg ccacctcgcc ggaaagccgc tccgtcaaag cctgaaaaag ctgtggtatc
     8641 cccgctccgg tctgtgcgga aagccagaca cggatcggtt tgttctcttc gtcccgatca
     8701 atacgcggtt cgaaatcttc cagcatatcg atcttgttca tcaccagcag ggttgggatc
     8761 tcgtgagcgt cgatctcttc aagaaccgta ttcaccgctt cgatgttttc ttgtacacgc
     8821 acatccgccg catcaatgac gtgcagcagt aatgtggctt gccgcgtctc ttgtaacgtg
     8881 gctttaaatg ccgccaccag atcgtgcggc agatggcgaa taaaccctac ggtatctgca
     8941 agtacggttt caccgacatc cgcgacgtca atacgccgca acgtcgggtc gagggtggca
     9001 aacaactggt ctgccgcgta gacccgcgct tcggtgatgc gattgaaaag ggtagattta
     9061 ccggcgttgg tatatcccac cagcgaaaca gtaggaacgt cggctttgat acgcgattgc
     9121 cgcccctgct cacgctgctt ttcaactctt tccaggcgcg actgtatctg cacgatgcga
     9181 ttacgcaaca aacgacggtc ggtttcgagc tgggtttcac ccggaccacg caaacctatc
     9241 ccgcctttct gtctttcaag gtgggtccag ccacgcacca ggcgcgtagc cagatggcgc
     9301 agctgcgcca gctcaacctg caacttaccc tcatgggtac gcgcacgttg ggcgaaaata
     9361 tctaaaataa ggccggtgcg gtcgatgaca cgacactcgc acaaacgctc caggttacgc
     9421 tcttgcgccg ggctcagggc atggtcaaaa agaacgaccg aagcacccgt cgctttgaca
     9481 gcttccgcaa tttcaactgc tttaccttca cctacaaaat actttgggtg cggcgcttta
     9541 cggctaccgg taatcacctg caatgcttcg acaccggcgg aagaaaccag agattcaaac
     9601 tcctggaggt cttccatatc tttgtctttc gtaaaataga tgtgtaccag taccgcctgc
     9661 tcaccagcat cataacggtc aaacaagcgt ataaccctct aaatagatca gcggggaacg
     9721 caggatcgct ggctccccgt gtaaaaaaaa cagcccgaaa ccttattcgg tttcttcgct
     9781 gtcctgttgc gcggaagtat tctgcgcgct gctaccatga tggtagttac tgctggtacc
     9841 gccaccggcg ttgttactgt gatgagaaac cggacgagac gggacaacag tagaaatcgc
     9901 gtgcttgtaa accatctggc tgaccgtgtt tttcaacagg atcacgaact gatcaaaaga
     9961 ctcgatttgc ccttgcagct taataccatt caccaaataa atagaaactg gaacacgttc
    10021 ccgacgcagt gcgttcagga acggatcttg taaagattgc cccttagcca ttctctcttt
    10081 tccttatatg cttatttgta ctttgaacct ttcgattctg aaaaaattgc gcacgatacg
    10141 tctcaattgt acacattcag cctgcgatag caccaacaac ctgtaatact tcgtcacgcg
    10201 cctgttctgg tttttcactg tcaagccagt gaaccccttc ccaaccacgc agccaggtta
    10261 tctgccgctt cgccaactgt ctcgtggcgc aaacacctcg ataaaccatt tcatcgtatg
    10321 agatttcgcc ttcaaggtaa gaccacatct ggcgataacc cacgcaacga atggaaggca
    10381 agtccgtatg caaatctcct cgggcaaaaa gcgcccggac ttctgcttca aaacctgaag
    10441 ccaacatctg atgaaaacgc tgctcaatgc gttgatggag cagttcacgg ctcgccgggg
    10501 cgatggcgaa ctgatgcacc tgatacggta gagcgtctcc tgacgtttgc gtcagttccg
    10561 ttaaagtttt acccgaaatg aaaaaaactt ccagtgcccg ggaaagcctt tgtggatcat
    10621 ttggatgaat ccttgctgcc gcaaccggat ctacctcctg aagttgacga tgcaatgact
    10681 cccaaccttg ctctgccgcc tgttgctcaa ttctggcccg cacttccggg tctgccgacg
    10741 gtagcggcga caacccttcc agcaatgcct tgaaatacaa catcgtaccg cccactaaca
    10801 gtgggatccg ccccgccgcg gtgatatcgg ccatttccgc cagcgcatcg cggcgaaaat
    10861 cagcagccga gtaagcctgc gacggatcgc gaatatccag caatcggtgc ggcgcggcga
    10921 gtaactcttc agcgttcggc ttcgccgtcc cgatatccat ccctttgtaa ataagggcag
    10981 aatcaacgct tatcaactct actggtaaaa ttttacgcag ctcaatggct aacgccgttt
    11041 taccggaggc cgtcggcccc atcaaaaaaa tcgccttagg caggctcgcc ttactgatat
    11101 cactcatctt tcagggcttt tatcgccgga tgtaaatcaa cagattgtaa cagaccaccc
    11161 ggcggcgttt tcacaagttg cggacataac cgttccacgt ccgccagcag ggttatggcc
    11221 tgtgccattg accactgcgc atgttcgctc atcagatttc gtgcaatcca ctgcgcaata
    11281 ttgccaggtt cgaatacgga ctgcttcgcc aggtagccta tcagttcagg aatcaagatt
    11341 tgtaaatttt gttggcgtaa gggtaaaggc acggccctga tggtcacatg ctgtgcatct
    11401 gactggaaat caatacccaa ttccgccagg gcagactgcg ctttttctaa tgccgatttt
    11461 tcttcgccag aaacttttag ccgcaacgga ataagcagcg gctgagcgca aactggcgct
    11521 tcacccgggg tcagttgtac ctgacgcagc caacgttctg ccactggcaa ggctaaaagt
    11581 gaaatgttgc cgtcgcgctc cagcaacgca cagtcggaat ggacgatagt cagtacccga
    11641 ccaaaactct gactgttcgc cgcaagtgca ggttcctgcg gttccggcgc ttttaatttt
    11701 tgcatcggcg cgggcgtttg caaaagctgg cgatacactt caccttgctg tttctggtag
    11761 cctggctgcg cattcggcca aggggcagcc ggacgactgc ctgatgctgg cgcaggagtg
    11821 tagcgcggag ctaccggctc acgagctgcc ggttctgcaa agtgattgcg ccccgccgcc
    11881 acgcggtttt ccggaatgga acgcggtgca ggttggggtt catcgtccag cggtagcggc
    11941 gtttccagtt gctgttgtag cacgctcagc acgccctgat agataaaatc atgcaccaga
    12001 cgcgactgat ggaaacgcac ttcgtgtttg gcggggtgca cgttgacgtc cacctgatgc
    12061 ggatcgatct ccagatacag cacaaatgcc ggttgctgat cggcccccag tttgtcttcg
    12121 caggcctggc ggatcgcgtg attgatcagg cgatcgcgca tcatgcgacc gttcacgtag
    12181 caatactgaa tttctgccag tgcgggcgtg gtgtgatttg gatcggccac ccagccgcgt
    12241 agcgtgagat cgccgtgttg ccattcaatc gccagcgctt gttcaagaaa agcggtgccg
    12301 caaatcgcgc ctaagcgccg ttctttttgc ccgccttccg gcactgcgcg gtactgacgc
    12361 acaattttac cgttatgcga caggttgatc gtgacgtcga aacgcgccag cgcaatgcgg
    12421 cggatgatct catcaatgtg gttaaattcg gttttctcgg tgcgcaggaa tttgcgccgc
    12481 gccggggtgt tgtagaacag atccagcacc tccagcgtcg tccccacagg atgcgccgcc
    12541 ggttttaccg tcacgttcat atcgcgccct tcggcatagg cctgccaggc ttcctgctgt
    12601 tctgcggtgc gtgaagtgag cgtcaggcgg gaaaccgaac tgatactcgc cagcgcctca
    12661 ccgcgaaagc ccaggctgat aatggcttcg agatcgtcca gagaggcgat tttactggtg
    12721 gcatgacgag ccagcgccag cgccagctca tcttttttga taccgcagcc gttatcacga
    12781 atgcggataa gtttcgcccc accgcgttcg atatcaatat cgatacgcgt cgcacctgca
    12841 tcgaggctgt tttccaccag ttctttgact accgacgcag gtcgctcgac cacctcacct
    12901 gcggcaatct ggttcgccag ttgtggcggt aagacctgaa ttggcatcaa tcgtccttag
    12961 tttggcagcg tgcgatctgg cgtcgtcacc gtactggccg tttgtgccgt tgcaccctgc
    13021 ggcgcagatt gcatcggatg cgcaaggaaa taattgcgca ggcctttgta aatggcttct
    13081 gccagctgtt gttggtaatc gtcgctcgcc agcaaacgtt cttcgctgtt gttgctgata
    13141 aaaccggttt cgaccagtac tgacgggata tccggcgaac gcagaacgcc gagactcgcg
    13201 tgttctggtc ggcgtttatg tatttcgcca atgcgttgca actgactgat catactggtc
    13261 gctacatcat accctacccg ctgggaatga ccgaactgta aatccagcac cgcctggctt
    13321 aaatagggat cagactgact gttcgccagc acatcgcccg ccccacccag cagctccgaa
    13381 tgtttctcgt gctgctccag ccagctggcc atttcgctgt tggcgcgacg gttagagagc
    13441 acccatacgg aagcgccagt cgcactgcgg ttcggtgcgg catcagcgtg aatcgacacg
    13501 aggaaattag cgttttgctt acgtgccaca tcgctgcgcc ccatcaccga aataaagtaa
    13561 tccccgtcac gggttaaaac gcctttaaac atcggatcgt cattgagcaa agtacgcaat
    13621 ttacgcgcga tggcgatggt gacatttttc tcccgcgtac caccggggcc gatagcgcca
    13681 gggtcctgac cgccgtgtcc ggcatcaata gcgatgataa ttttatcgcc agtgttagcc
    13741 gtcgcgcgcg ctgccggacg cgttaccgta ttactgctga taacacccgt agtgcggtta
    13801 ctttccgttt taaacggatt gcgcgccggt tcgctgacgc gcggtgcgac aaccgcaggc
    13861 gtttcaacgc gtttcgcaac cacgggcggc ggaggaggcg gtggcggcac atcggcgtta
    13921 atcgtaaaga cgacagtgta attgctgcca ttctgccgct tcaccgcttc ggttttacca
    13981 ttttcggtaa gatcgaccac cagccgtagc gtttgtgcat ctttaggcgt tccagagcga
    14041 atcgccttca ccagattatt gccgctgaac aacaacggca gtccctgaat cacgcccgtt
    14101 tgtttgatat cgagcgccac ggtgcgtttg ctttgatggc taaacgcata atcaggatcg
    14161 ccaataaaac tcaacgttat ccgcgcctgt tgattaccgt tagaaacctg aatatcagag
    14221 agcgtcgcgg cacccaccgg cgtgcacagc agcagcagcg tcgctaccaa ccaatttctg
    14281 atgcgataca tcatcccgcc acctttcaaa ggttaaccgg ctaaacgcgc cagcaacaat
    14341 tcacccgcag aggaaaccgc actcacgcgc gcctcacggc cttgtgcctg ataatcaatg
    14401 tgtatttcga catccgggtc aggaagaaca cctgtacctt gttgtggcca ctccaccagg
    14461 cagatggcat cgttggcaaa ataatcgcgg atccccataa actccagctc ctcgggatcg
    14521 gcaaggcggt acaaatcaaa gtgataaacc attaaattgt cgagcgtata gggttcgacc
    14581 agcgtataag tggggctttt gacattaccc tgatgaccca gagcttgtaa aaagccccgg
    14641 ctaaaggtgg tcttacctgc gcctaaatcg ccatacagat agattacggt tgcgccatcg
    14701 caggctttcg ctacccgctc gcccaggtct aatgttgcct gctcatcagg gagcggaatt
    14761 actcgattca tcatggtttt tatcagtcac ttccgggtta acaatacgct gtagcgtgga
    14821 aaagagatcg gttgccagca tcccgcgcgt tccaaaacgc gccgccagta cgtcagctgc
    14881 cgcaccgtgc gcgacacagc ccgcacaggc ggcatcatac ggcgacagtt tttgcccaag
    14941 caatgcgcca ataataccag agagcacatc gcccatgccg ccgctcgcca tgcctgcatt
    15001 tccggcatca ataatgccta aagcgtcagg atgggcggcg accacggttc cggcaccttt
    15061 cagcaccgct acgccgccat aacgttgtac cagacgtttg gcgcaatgta agcggtcact
    15121 ttcaatttca gcgacggaac agcctaacaa ccgtgcggcc tcgccaggat gcggcgtgat
    15181 cacgcgattg tgacgcttat cgggattgat tgccagcagg ttcaatgcat cggcatccca
    15241 caacatcggt ttgcgaaaat tctcaacttt ttgcagtgct tttttccccc actcttgctg
    15301 gcccagaccg ggaccaatca ccaccacatc ggcccattcc aggctttcgg taagagagtc
    15361 catcgtcagt tcatgcacca tcaattccgg tcgtgcagtc agcagcggcg caatgttttc
    15421 actgcgggtc agtactcgga ctaaaccagc accagcacgc agcgccgctt cccccgtcat
    15481 acgaatagcc cccgccgtgc cgtgatcgcc accgataatt accagccgcc cgtgatcgcc
    15541 tttatgcgaa gtcgggcgac gcggttttag ccagtgagaa agttgttctg ctgaaaaccg
    15601 ctgaattttc gtctcctgac ctgccagcca actatccagc cccagtgagt caaaatgcag
    15661 ttgtccggta acatcccgcg cttttccagt gagcaagcct ggtttcagcg caataaaagt
    15721 gatggtgtga tcggcgttga tcaccgcgcc tggcgtagcg ccagtttcag ccagcaggcc
    15781 ggaagggata tcaaccgcca caatcggcgc aggatgggaa ttagcgtggt cgattaactg
    15841 gctaatggat tcgcggggcg cttgccgcaa accggtaccg agcagcgcat caacaatcag
    15901 atctaccgat tcgggccaga caatattcga agcatggatc tcgccacccg cgtttaacca
    15961 tgcttcgcgt gccagcgcgg cctcttccgg caacggtttg tcgctctcct gggcaaacaa
    16021 cgtgacctca atgccgaccg ctttggccag tcgcgcgacc acgtagccat cgccgccgtt
    16081 attaccatga ccgcacagca ccagccagtg gcgggcgtca ggatacgccg aacgacacac
    16141 ctggaatgcg gcctcgccag cgcgaagcat cagctcatag agtgtgagcc ccagcacatc
    16201 tgccgcctcg cgttctccgc ggcggatatc gtcggcgtac cagacggtgt gtggtatact
    16261 tacggggttt ttcttcattg tatggtccgt catgtcagag cccctcgatc tcaatcagtt
    16321 agcgcaaaaa attaaacagt gggggctgga actgggcttt cagcaggtag gtattaccga
    16381 taccgatctc agcgagtccg agcccaaact gcaagcatgg ctggacaaac aataccacgg
    16441 cgaaatggac tggatggcac gtcacggtat gctgcgcgct cgccctcatg agttattgcc
    16501 cggtacgctg cgcgtgatca gcgtgcggat gaattacctt cctgctaacg ccgcatttgc
    16561 cagcacgctg aaaaacccca aactcggcta tgttagccgt tatgcgctgg gccgtgacta
    16621 tcacaaactt ctgcgcaacc gactcaaaaa gctgggcgag atgattcagc aacattgtgt
    16681 ttcgctgaat tttagaccgt ttgtcgattc tgcgcctatt ctcgagcgcc cgttagctga
    16741 aaaagctggg ctcggctgga caggtaagca ctcacttatc ctcaatcgcg aggccggttc
    16801 gttcttcttt ttaggcgaat tgctggtcga tattccgctg cccgtggatc aaccagtcga
    16861 ggaaggatgc ggtaaatgcg tggcctgtat gacgatttgc ccgaccggtg ccatcgtcga
    16921 gccatatacc gtcgatgctc gccgctgtat ctcttatctc accatcgaac ttgaaggggc
    16981 gatcccggaa gagttgcgac cgttaatggg aaaccgtatt tacggttgcg atgactgcca
    17041 gcctatctgc ccgtggaatc gctattcaca actcaccaca gaagaggatt tcagcccgcg
    17101 taagccgcta cacgcaccgg aactcattga gttattcgcc tggagcgaag agaagttttt
    17161 aaaagtcacg gaaggatcgg cgattcgtcg aattggtcac ctgcgttggc tgcgtaatat
    17221 cgccgtagca ttaggcaatg ccccttggga tgaaacgatt ttgacagcgc tggaaagtcg
    17281 taaaggtgag cacccacttc tcgatgagca catagcgtgg gcgattgcgc agcaaataga
    17341 gagacgaaat gcgtgcatag tcgaagtgca attgccgaaa aaacagcgtc tggttcgggt
    17401 gattgaaaaa gggttaccgc gtgacgcctg attcatccac agcttgtgaa taaaaataaa
    17461 aacgcattgc aattcaagac gaataaaatc gtcaagtgat cgactcgaca aaacggaatc
    17521 ttaattttta acttatctat caataggtta aaaaaatact attcaccgtg cgaagtttct
    17581 ttgaaattaa gattacagcc tgaggctgtg gataactctg tttacaagag tttgtcagag
    17641 acaacgaaaa ccagcaataa cgcatcgctg tggatatttt attgagagaa ga
//
LOCUS       DAJVUP010000081        17499 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.081, whole genome shotgun sequence.
ACCESSION   DAJVUP010000081 DAJVUP010000000
VERSION     DAJVUP010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17499
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.081"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..321)
                     /locus_tag="OQQ75_002457"
     CDS             complement(<1..321)
                     /locus_tag="OQQ75_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor (BI)-1/YccA family protein"
                     /protein_id="HCS1976746.1"
                     /translation="MESYSQNSNKLDFQHETRILNGIWLITALGLVATAGLAWGAKYL
                     EITATKYDSPTMYVAIGLLLVCMYGLSKDINKINAVIAGVIYLFLLSLVAIVVASLVP
                     VYAII"
     gene            complement(527..1231)
                     /locus_tag="OQQ75_002458"
     CDS             complement(527..1231)
                     /locus_tag="OQQ75_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HCS1976747.1"
                     /translation="MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN
                     SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS
                     IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW
                     LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD
                     FINLFLMLLRIFGNRR"
     gene            complement(1368..1820)
                     /gene="moaE"
                     /locus_tag="OQQ75_002459"
     CDS             complement(1368..1820)
                     /gene="moaE"
                     /locus_tag="OQQ75_002459"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HCS1976748.1"
                     /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG
                     DSVKALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFAGVTSA
                     HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW"
     gene            complement(1822..2067)
                     /gene="moaD"
                     /locus_tag="OQQ75_002460"
     CDS             complement(1822..2067)
                     /gene="moaD"
                     /locus_tag="OQQ75_002460"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HCS1976749.1"
                     /translation="MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWAL
                     ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG"
     gene            complement(2060..2545)
                     /gene="moaC"
                     /locus_tag="OQQ75_002461"
     CDS             complement(2060..2545)
                     /gene="moaC"
                     /locus_tag="OQQ75_002461"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HCS1976750.1"
                     /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI
                     IDGRHHKGDVFATARITGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL
                     CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD
                     D"
     gene            complement(2548..3060)
                     /gene="moaB"
                     /locus_tag="OQQ75_002462"
     CDS             complement(2548..3060)
                     /gene="moaB"
                     /locus_tag="OQQ75_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HCS1976751.1"
                     /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV
                     VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF
                     GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR
                     PCNFHPHLKK"
     gene            complement(3082..4071)
                     /gene="moaA"
                     /locus_tag="OQQ75_002463"
     CDS             complement(3082..4071)
                     /gene="moaA"
                     /locus_tag="OQQ75_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HCS1976752.1"
                     /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK
                     GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG
                     YRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK
                     VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL
                     RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLF
                     GEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG"
     regulatory      complement(4059..4203)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            4468..5376
                     /gene="yvcK"
                     /locus_tag="OQQ75_002464"
     CDS             4468..5376
                     /gene="yvcK"
                     /locus_tag="OQQ75_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HCS1976753.1"
                     /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN
                     GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK
                     ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP
                     IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV
                     YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL
                     EASDIPYRHDRQLLHNALEKALQALG"
     gene            complement(5568..7589)
                     /gene="uvrB"
                     /locus_tag="OQQ75_002465"
     CDS             complement(5568..7589)
                     /gene="uvrB"
                     /locus_tag="OQQ75_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HCS1976754.1"
                     /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG
                     KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV
                     PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
                     LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD
                     EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE
                     NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL
                     LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV
                     SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
                     VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE
                     GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG
                     ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP
                     MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS"
     gene            complement(8168..8845)
                     /gene="bioD"
                     /locus_tag="OQQ75_002466"
     CDS             complement(8168..8845)
                     /gene="bioD"
                     /locus_tag="OQQ75_002466"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706656.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1976755.1"
                     /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGS
                     EKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAG
                     LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA
                     QAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
                     YINLALL"
     gene            complement(8838..9593)
                     /gene="bioC"
                     /locus_tag="OQQ75_002467"
     CDS             complement(8838..9593)
                     /gene="bioC"
                     /locus_tag="OQQ75_002467"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HCS1976756.1"
                     /translation="MATVNKQAIAAAFGRAAAHYEQHAELQRRSADVLLAMLPQRKYT
                     HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATA
                     TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERP
                     HANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRIL
                     TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE"
     gene            complement(9580..10734)
                     /gene="bioF"
                     /locus_tag="OQQ75_002468"
     CDS             complement(9580..10734)
                     /gene="bioF"
                     /locus_tag="OQQ75_002468"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCS1976757.1"
                     /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF
                     SSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRA
                     LLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLAR
                     LLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG
                     SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYNTSMPPAQAQAL
                     RASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL
                     AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG"
     gene            complement(10731..11771)
                     /gene="bioB"
                     /locus_tag="OQQ75_002469"
     CDS             complement(10731..11771)
                     /gene="bioB"
                     /locus_tag="OQQ75_002469"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HCS1976758.1"
                     /translation="MAHRPRWTLSQVAELFEKPLLDLLFEAQQVHRQHFDPRQVQVST
                     LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW
                     KNPNERDMPYLEQMVQGVKDLGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF
                     YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES
                     VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC
                     FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMT
                     PDTDEYYNAAAL"
     gene            11858..13147
                     /gene="bioA"
                     /locus_tag="OQQ75_002470"
     CDS             11858..13147
                     /gene="bioA"
                     /locus_tag="OQQ75_002470"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HCS1976759.1"
                     /translation="MTKDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRR
                     LIDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP
                     LECVFLADSGSVAVEVAMKMALQYWQAKGEVRQRFLTFRNGYHGDTFGAMSVCDPDNS
                     MHNLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAG
                     GMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKAL
                     TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ
                     QVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRP
                     FGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ"
     gene            13206..13682
                     /locus_tag="OQQ75_002471"
     CDS             13206..13682
                     /locus_tag="OQQ75_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase inhibitor"
                     /protein_id="HCS1976760.1"
                     /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK
                     SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG
                     YDGAAPPKGETHRYIFTVHALDVEHIDVDEGASGAMVGFNVHFHSLASASITAMFS"
     gene            13834..15117
                     /locus_tag="OQQ75_002472"
     CDS             13834..15117
                     /locus_tag="OQQ75_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA thioester hydrolase"
                     /protein_id="HCS1976761.1"
                     /translation="MNTFSVSRLALALAFSVTLTACSSTPPDQRPSDQTAPGTSSRPI
                     LSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD
                     AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
                     DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT
                     LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT
                     NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN
                     AFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD
                     DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK"
     gene            complement(15258..17495)
                     /locus_tag="OQQ75_002473"
     CDS             complement(15258..17495)
                     /locus_tag="OQQ75_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydratase"
                     /protein_id="HCS1976762.1"
                     /translation="MFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMD
                     KLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVF
                     GLSAAQRYGGIFVPPHIAIIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGE
                     LVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVG
                     PGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYY
                     DGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLL
                     DKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDL
                     AKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQM
                     SAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQ
                     PLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEF
                     TLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMV
                     YAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV
                     GDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFN
                     KNRQM"
BASE COUNT         4092 a         4733 c         4442 g         4232 t
ORIGIN      
        1 gataatggca tatacaggaa ctaaacttgc aacgacaatc gccaccaaag agagtaaaaa
       61 cagatatatt acgcctgcga tgacggcatt tatcttgttg atatccttac ttaagccata
      121 catacaaact aataataacc ctatggcgac atacattgtt ggtgaatcat atttggttgc
      181 cgtaatttcg agatacttag ctccccaggc cagtcctgcg gttgccacca aacctaaagc
      241 ggtaatgagc catataccgt ttaatatcct ggtctcgtgc tgaaaatcta atttattgct
      301 gttttgtgag tatgattcca ttcttttagt tgtccttaga aaaaatatta atattcacca
      361 tcaataaatt taaacccacg catacaaaat acttttgtat ttatggatac ggaaaacgct
      421 tccgctcggc cataaggcgt attttatacc tggtacttgt taagtgtcgt ttttagtaag
      481 aaaagaaatc ccgacacatg gccgggatat tgatggtgaa aaagaattaa cggcggttgc
      541 caaaaattcg cagcaacatc aggaacaggt tgatgaagtc cagatacaag gttaacgcgc
      601 caagaatgga atatttgcgc aggttcgacg tgtcgcgggt atcaatctgc tcacccatat
      661 ttttcaattt ctgagtgtca tacgccgtca atccgacaaa gacaatcacg ccgatgtagg
      721 taactgccca catcaatgct tcgcttttca gccagaagtt gaccagcgat gccagcacaa
      781 tgccgattaa cgccataaac agcatattgc caaagccact taaatcgcgc ttcgtggtgt
      841 aaccgtacag gctcattgcg ccgaacatcc cggcagtaac gacgaaagta ctggcgatag
      901 aagcagcggt atagacaatg aatatactgg aaagcgtaag acccgtcagc gccgaataaa
      961 gcataaagag catcgtcgtt acacctgcgc tcagcttttg aatcatcgct gataacacaa
     1021 taaccaatgc taattgcgcg atgatcagac cgattaaaaa gacacggtta gtgaacaaca
     1081 gctccatcac ggccgcggaa ttagccgcat accaggcaac aaatgcggtc agcaacaagc
     1141 caacggtcat ccagccatag acttgcgcca tataagtttg caagccagcc cggggttgta
     1201 cgattgaatc agaacgtggg aatctgtcca tgacgatctc ctgaagatat aaggaatatc
     1261 ttaaggatac tgcaaaatga tgaggctgtg catcgacgca gcgtaaacgc atgtactgag
     1321 cggtgaaatt gccggacgca gcggtgcctt atccggctaa caaaaaacta ccagcgtttt
     1381 gccgcctgct gatcgctctc ccgagcttca acccagcggt cgccttccgg cgtggcttcg
     1441 cgcttccaga acggtgcgcg ggttttgaga taatccataa taaactgccc ggcttcaaac
     1501 gcactgctgc gatgcgcact ggtgacaccg gcaaaaacga tttcatcgcc cggccataat
     1561 tccccgatgc ggtgaatcac agtgacgcgc cccagcggcc agcggttacg cgcttcatca
     1621 acaatttctg ccagtgcttt ttcagtcatt cccggatagt gttcgagggt taatgctttg
     1681 acgctgtcgc ccaggttatg gttgcgcacc ttaccagtaa aggtgactac cgcaccgtct
     1741 tcgtcacgct ccgccagcca cgggtactct tctcctacgc tgaacggctg cggaccaaca
     1801 acaattttgg tttctgccat cttaacctcc ggttaccggc gggaagaaag ctacttcgtc
     1861 gccgtcagtc agcggatggt caaaactcac cagcgtctgg ttgacggcag ccagtaattt
     1921 gccatcttcc agcgccagcg cccagcgatc gctctgcgca gccatgtgct ggcgtaacgc
     1981 ttcaacagtt gggaaatccg cagccacttc ggttgcatct gttcccacca actcgcgcac
     2041 ctgcgcgaaa aaaagaactt taatcatccg cttccacctt aaagtcaccc gacttgccgc
     2101 cgctcttcgc cagcaaacgt accggaccaa tcaccatatc tttttgcacc gctttgcaca
     2161 tgtcataaat ggtcagcgcc gccacggagg ccgcggttaa tgcttccatt tcgacaccgg
     2221 ttttcccggt caggcggcat aaggtttcta tacgcacccg attgtgctcc ggctcggcct
     2281 gtaaattgac ttcaactttg ctgagcatca gcggatgaca gagcgggatc agatcccagg
     2341 tgcgttttgc cgcctgaata ccggtaatac gcgcagtggc aaatacgtcg cctttgtggt
     2401 ggcgaccatc aataatcatc gccagcgtct cgctgcgcat ggtgacaaag gcttccgccc
     2461 gcgcttcacg cacggtttcc gctttggcgg agacatccac catgtgcgct tcgccagcgg
     2521 cgttgatatg ggtcagttgc gacatactta tttcttcaaa tgtggatgga aattacacgg
     2581 acgcgtacgg gcatccagct gcggcgcgat gatattttcc catgcggtac ggcacgcttt
     2641 ggtcgaaccc ggcatggcga aaatcagcgt tttgttggcg acgcccgcaa ccgcacgaga
     2701 ttgcaacgtg gaagtgccaa tctcttcaaa cgacaacatc cggaacactt caccaaaacc
     2761 ttcaacttca cggtcgaaca acggcagcaa tgcttcggga gcctgatcac cttccgtcag
     2821 gccagtacca cccgtaatca ataccacttg tacatcgtcg ctggcgatcc acgcagatac
     2881 ctgagcgcga atagcgtagc ggttttcttt cacaatggct ttatcgacaa cgtgatggcc
     2941 cgcttcttgc gccgaatcgc gcagatagtg accggaggta tcgtcttctt caccgcgacg
     3001 attagaaacc gtaagaatag caatacgggt cgggataaat tcagtgctta cctgactcat
     3061 ctgatctctc cttttgacgt tttagccgcc aatgtacgat aagttttgcg taataccggt
     3121 gttgttttga tgcaggaaat gggtctgttt cttctcccgc agcgccgctg aaatacgcgc
     3181 ttccagcgcc tgttgctggg tatcgtcttc cagcagatcg cgcaggttaa cgccgccttc
     3241 accaaacagg cagagatgga gtttaccaat ggaggaaacg cgcaggcggt tgcaagtggc
     3301 gcagaagtct ttttcatacg gcatgataag gccaatctct ccggcgtaat ctggatggca
     3361 aaagacttgc gcgggaccgt cgctgcgttg acgtaattgg tggatccagc cgcgacgcag
     3421 tagctcgtca cgcagaacct gaccagagat gtgatgctta cggaagagct cgctgccctc
     3481 gcccgtttcc atcagttcga tgaaacgcag ctggataggg cgatgctgga tccagttcag
     3541 aaaggtgtcg agctggtgat gattaacatc acgcatcagc acggtattga ctttgacctt
     3601 ctcaaaaccg gcctcaaatg cagcatcaat ccctgccatg acctggttga atttatcctg
     3661 cccggtaata gcgtgaaact ggcgggcgtc cagactgtcg acactgacgt taatgccagt
     3721 aagtcccgca tcgcgccagt tcgccacatc gcgttccaga cggtaaccat tggtggtgac
     3781 cgcaatctgg cggatagcgt cgttttcccg cacagcggcg atgatatcgg taaagtcgcg
     3841 gcgtaaagac ggctcacctc ctgtcaggcg cactttttcg gtgcccagac tggcgaaggc
     3901 gcgcgtaacc cggcgaattt catcgacggt aagaaagcct ttattggtga cgccgctcgg
     3961 tttgtagcca tccggcaggc agtaggtgca acgaaagtta cacacatcgg taatcgacag
     4021 gcgcaagtag taaaacttac gcgcaaatgc atcagtcagt tgtgaagcca tgtacacctt
     4081 tccagatacg ggaggcgaag tcatttcttc cttcgccctg gtggcaatct ttacgagcat
     4141 tgtcacggcc aaagcaccgt atcagttgac ccaggtgcag aggctagagt gtttagtggt
     4201 taagccgata ctagcgtgta aatgagattt ttaccatcca cactttcgct atgcaatcat
     4261 gtatatagcg tcatgatcgt gctatttcgc tacagaataa gggaaaatgg cagttttact
     4321 ttgatataca tcatcaggga ggcatagcgt gcatcgtcct ttagaggtag aagaaaatag
     4381 tttgtatcct caatattggc aggttaattg ctgtttcccc gcaatttgcg ctactgtagc
     4441 gcggataatc tgactccagg aaactatatg cgcaatcgta cgctggctga tcttgatcgt
     4501 gtcgttgctc tcggcggagg gcatggactg ggacgcgttc tctcatcact ttcgtctttg
     4561 ggttctcgtt taacgggtat cgtcaccacc acggataatg gtggctcgac ggggcgtatt
     4621 cgccgttcag aaggcggcat tgcctggggc gatatgcgca actgcctcaa ccaactgata
     4681 acggaaccga gcgtcgcctc cgcgatgttt gaataccgtt ttggcggcaa tggcgaactt
     4741 tccgggcaca accttggaaa cttgatgtta aaggcgctgg atcaccttag cgtgcggcct
     4801 ctggaagcca tcaatttaat tcgtaatctg ctgaaagtgg atacgcattt gattccaatg
     4861 tcagagcatc ccgtcgatct gatggcgatt gacgatcagg ggcatgaagt ttacggcgag
     4921 gtcaatatcg accagttaac tacgccgatt caagagttat tattaacgcc gaatgtaccc
     4981 gcaacgcgtg aggcagttca cgctatcaat gaagcggatc tcatcattat tgggcctggc
     5041 agtttttata ccagcctgat gccaattctg ctgctgaagg aaatcgccca ggcattacgc
     5101 cgcacgccag cgccgatggt ttatatcggc aatctggggc gtgagttgag tttacctgcg
     5161 gctaatttga agctggaaag caagctggca attatggagc agtatgttgg taaaaaagtc
     5221 attgatgcgg tcatcgtcgg gccaaaagtg gatgtctcgg cggtgaaaga gcggattgtg
     5281 atccaggagg tactggaggc cagcgatatt ccgtatcgtc atgaccgcca gttgttacat
     5341 aacgcgctgg aaaaggcgtt acaggcttta ggttaacgga aatccgaagg aaaattccgg
     5401 cttcctattg aagacaaagt gcgcgttgtt tatgccggat gcggcgtgaa cgccttatcc
     5461 ggcctacaaa ccgcgcaaat tcaatatatt gcggagaaaa tgtaggcctg ataagcgtag
     5521 cgcatcaggc tgttttccgt ttgtcatcag tcttcttcgc tatcctgtta cgatgcggca
     5581 ataaacaact cacgcaactg atgcaactgg tcacgaattt gtgccgcttc ttcgaactcc
     5641 agattctgcg cgtgttgcat catcagccct tccagttcat ggattttctg ctgcaacgct
     5701 ttcggcgaca tatccatcgg cacattatcc ggctcaacaa tcgggcgcga ttttcctctg
     5761 cccttcgctt tggttttggc aatgttctgc cccagcgcca ggatatcgac cactttcttg
     5821 ttcaagcctt gcggcgtaat gccgtgttcc tcgttgtact tctgctgttt ctcacggcga
     5881 cgttcggttt cgccaatcgc tttcgccatt gatggggtga tcttatcgcc gtagagaatc
     5941 gctttaccgt taacgttacg tgccgcacga ccaatggtct ggatcaacga acgttcggaa
     6001 cgcaggaagc cttctttgtc agcgtcgagg atcgccacca gcgacacttc cggcatatcc
     6061 agaccttcgc gcagtaagtt gatccctacc agcacgtcga actcacccag acgcaagtcg
     6121 cggataatct ccatacgttc gacggtgtcg atatctgagt gaagataacg cacgcgctcg
     6181 ccatgttctt cgagatattc ggtaagatct tccgccatcc gcttggtcag tgtggtgacc
     6241 agtacgcgtt cgttaattgc cgctcgctga cgaatctccg aaagaagatc atcaacctgt
     6301 gtcgccaccg gccgcacttc gataatcggg tcaagcaatc cggttggacg caccacctga
     6361 tccaccacat cgccgccgga tttttccagc tcgtaattac ccggcgtcgc cgaaacatag
     6421 atggtttgcg gcgctaatgc ttcgaactct tcaaacttaa gcggacggtt atccagcgct
     6481 gatggcaggc ggaagccgta ctccaccagt gtctctttac gcgcccggtc accgcgatac
     6541 atgccgccaa tttgtggaat ggtgacgtga gattcatcga cgaccagcag cccatcggca
     6601 ggcaggtaat caaacagcgt cggcggtggc tcacccggtc cacgaccgga gaggaagcgc
     6661 gagtagtttt caatccccga acagtagccc agctcgttca tcatctccag atcaaactgg
     6721 gtacgctggg tcagccgctg ctcttccagc agtttgttgt tttccaacag cactttgcgt
     6781 ctggcggcca gttcttcttt gatctcctcc atcgcctgta cgatgcgctc gcgcggtgtg
     6841 acgtagtgcg ttttcgggta gatggtaaaa cgtggaatag tggaaacaat ctgcccggtc
     6901 agcgggtcaa ataacgacaa tcgttccact tcctcgtcaa acagttccac gcgaagtgca
     6961 atgtcatccg attctgccgg gaagatatca atcacctcgc cacgaacgcg gaaagtacca
     7021 cgctggaatg cttgatcatt acgagcgtat tgcagctccg ccagtcggcg cagaatcgcg
     7081 cgctgatcga taatcatacc gaccgtgaga tggagcatca tcttgagata taaatcagga
     7141 tcgcccagac cataaatcgc ggaaacagag gccactacaa ccacatcacg ccgctccagc
     7201 atcgctttgg tggcggataa acgcatctgc tcaatatgtt cgttaaccga ggcatctttc
     7261 tcaatgaaag tgtcggaact cggtacatag gcttccggct gatagtagtc gtagtaggag
     7321 acgaaatact ccaccgcgtt ttccgggaag aactctttca tttcgccata cagctgggcc
     7381 gccagcgttt tgttgggcgc aagtaccatg gttgggcgct gaaggtcagc aatgacattg
     7441 gcaatggtga aggttttccc tgagccagtc acgccaagta acgtctggtg cgccaggcca
     7501 tcttccagcc cctcttcgag acgtcgaatc gcctctggct gatcgccaga aggtttaaaa
     7561 gcggaattca gtttgaacgg tttactcatg agtcgctacc tgaaggagtt gggcgggcag
     7621 gtatgtaatt ttactcgtcg tacttaatta tgccaacaaa ttatactgga taaaaaaaca
     7681 gttcatcacc ataatatttc tgatacagcg taaactccgc tgtcaatcat gagcaaaatt
     7741 tactctgtgg cgagataaaa ctccggcctt accgggttat ccccaaagca acggcttttt
     7801 taacatttgt caagatgagt gatgacagtt ttatggcaag agatgcctgt tcagtgactg
     7861 ccattgcatt tatctaacca gttaaaaaat aaaagatatt tctttgagcc gtctttaacg
     7921 ccaattcgcg tgcaagccgc gtattctctc gcttgcctcg tgttttctaa ctctaataca
     7981 catggttatc cacaggaata gtggataact gtctccagcc cctatccccc gccgcctggg
     8041 caattcccac attcgccgca tgaggcggaa gtaaaatttt tttcgtgatt attttagaat
     8101 ttaattggtt aaattgcagt caatcgaaga cgcgatctcg ctcgcaattt aaccaaatac
     8161 agaatggcta caacaaggca aggtttatgt actttccggt tgccgcattt tctggatttt
     8221 ctgcaagcca ggggatctct cccagcagcg gcgcgggaat catgcgggtg agcgtggtca
     8281 tatattcagc gtgacgtttt cccggaggcg taacatcgtt cgccacccaa cccgccagag
     8341 tcagtccggc gtgttgtatt gcctgcgcag tcaacatcgc gtgattaata cagccgagtt
     8401 tcacaccaac taccagtatc accggcagtt gttcctgtgt tacccaatct gcaaaagtga
     8461 aagtgtcaga aagcggcgta aaccagccgc cagcaccttc cactaacacc cagtcagcct
     8521 gttgttcaag cgcgcgtaat ccggcgctca ttaccaatga ttctatcggc ctgccctctt
     8581 gcgcgctgat gatgtgcggc gaagtgggtt ctgcgaaggt gtaaggattt actgttgcgt
     8641 aatccagctg caggctgctg ttgtgctgta acgccagcgc gtcactatta cgtaagcctt
     8701 ccggggtctt ttcgctgcca gaggcgaccg gtttataacc tgccgtccga taacctactg
     8761 ccttcgcggc ttgtaaaagt gcacaactgg cgacggtttt ccccacttcg gtatccgttc
     8821 cggtgacaaa ataacgttta ctcacgagca atcactccca aaaaaagatg atacgtcaga
     8881 ggatatcgcc cctgttgttg cggccaggcc agttgcaatc gctgcaattg cgaacgcgtt
     8941 aatattcgcg ggtcgcgccc ttcatgaaga tgcgtagcac cgatgccttt cagcgaacgc
     9001 atggcactga gcgcatcatc aaaccatagt gtgatgggct gaatatgatg ttgataatgc
     9061 acgccgttca gcgactgttc gatttcatct ggcggtaaaa agcgattagc atgcggacgc
     9121 tcgtccaccg cctgccacgc ctgatgcagt tcgggtaacg atccctgcac cagcgtggta
     9181 aacgccacca cgcctccggg gcgcaccacc cgatacagct cgcggagtgc cgtggataaa
     9241 ttaccgcacc actgcaccgc gagattgctc catgcaagat cgaacgtcgc agtcgctaac
     9301 ggcagggatt cgatatctcc cgccagataa tggtctgcag catctttctg gcgggcttgc
     9361 acaagcattg gcggtgagag atctaacgcc gtcacctgtg cgtgacgctc tcgccagtgg
     9421 cggctcatcc agcctggccc acaccccgcg tccagtacgt gggtgtattt acgctgtggg
     9481 agcattgcca gtaagacgtc agcactccgg cgctgtaact ctgcgtgttg ctcatagtgc
     9541 gcggctgccc gaccaaatgc cgctgcaatg gcttgtttat taaccgttgc catgcagcac
     9601 ctccagcaga cggtcgatat cctgcatttc atgcgctgcg gttagcgtta agcgcagtcg
     9661 cgcagtacca gcgggtacgg ttggcgggcg aatcgccgtg acccagcagc cttgctggcg
     9721 cagtttttct gccagttgta acgcacggct gttatcaccg acgatcaatg gctggatggc
     9781 gctgcatgaa tcagcaagcg taaacggcaa atcctgtact ccggcacgaa aacgcgcaat
     9841 gagtgacacc agtttttcgc gccgtgcatc cccctcatca cggcgaatga ccgccagcga
     9901 cgcacgtaat gcctgcgcct gagcgggcgg catactggtg ttgtagataa ggtggcgggc
     9961 gaattgcagc agataatccg ccaccgtact ggagcaaagc accgctgccc cgctgacgcc
    10021 aaatcctttg ccaaaagtca ccaccagcaa ttctggtttt accttttgca gccagcagct
    10081 gccgcgcccc tgctccccga taacgcccgt gccgtgggca tcatcgacca tcaaccagcc
    10141 attgtgctgt tgcgttacct gctggatttc cgccagtggc gcactatcgc cgtccatgct
    10201 gaacacgcct tctgtcacca ccagttgctg ccccggacag ggggaagcaa gcagtcgcgc
    10261 cagatgagtg acatcgttat gaacaaaacg gcgaagctgc gacgggctta aactggcagc
    10321 ctccagcaat gaggcatggc taagccggtc agcgacaatg cggtcctctt ttgccatcat
    10381 cgcggcaatg accgcctgat tagcggcaaa accagagata aatagcagtg cccgcgaata
    10441 gcccagccac tcggccagtt cttcttccag cgcctgatgc gcaacgctat aaccgctgac
    10501 gtgaccggaa ccgccgctac cgacgccaaa ttgctccgca ccctgctgcc aggcacggat
    10561 aatttgcgga tgatggctta aacctaaata atcgttactg gaaaagttca gatactggcg
    10621 atcatccgcc accagccagc gtccggctcc ttgcgccact ggataacggc gacgcagggc
    10681 atcggcagca cgccgcgcat cgagcgccgc gttgattttc tcctgccagc tcatagtgct
    10741 gccgcgttgt aatattcgtc agtatccggg gtcatcagcg cctgttcaag acgttgctgt
    10801 tgttcgttat cccctgccag cacggcagtt tgctgcggat ttagccccag tttgcggaac
    10861 agttgcaggt ctttatcttc ttccggattc ggcgtggtca gcagtttgca accgtagaaa
    10921 atcgagtttg cgcctgccat aaagcacatc gcctgagtct gttcgttcat ctgctcgcgt
    10981 ccggcagaaa ggcgcacgta agaggtcggc atcatgatcc gcgcgaccgc aatggtgcga
    11041 ataaaatcaa aggcatcaac gtcatcgtta tcggcaagcg gcgtgccttt caccttcacc
    11101 agcatgttga ttggcacgct ttccggcggc gtcggcaggt ttgccagttg cagcaataat
    11161 ccggcgcgat cttttaccgt ttcgcctaag cccacaatgc cgccagaaca gactttgatc
    11221 ccggcatcgc gcactttttc cagcgtatcg aggcgttcct gataagtgcg ggtggtgatg
    11281 atattgccgt aaaactccgg cgaggtgtcg aggttgtggt tgtagtaatc cagcccggcg
    11341 ttcgcgaggc gctgcgcctg agattcactc aacgtgccca gcgtcataca cgcctccagc
    11401 cctaaatctt ttaccccctg caccatctgc tccaggtacg gcatatcgcg ttcgttggga
    11461 ttcttccacg ccgcgcccat gcaaaaacgc gtcgatcccg ccgctttcgc tttgcgcgcc
    11521 gactccagca cctgttcaac ttccatcaac cgctcggctt ccagaccggt tttatagcgc
    11581 gagctttgcg ggcaatattt gcaatcttcc gggcaagcac cggttttaat cgacagcaac
    11641 gtgctgacct gcacctgacg aggatcgaaa tgctggcgat gcacctgctg cgcttcaaac
    11701 agcagatcca gcaacggttt ttcaaataat tctgcgactt gcgacaatgt ccagcgtggg
    11761 cggtgagcca tggggcttct ccaaaacgtg ttttttgttg ttaattcggt gtagacttgt
    11821 aaacctaaat cttttcaatt tggtttacaa gtcgattatg acaaaggacg atcttgcctt
    11881 tgaccaacgc catatctggc acccatacac atccatgacc tccccgctgc cggtttatcc
    11941 ggtggtgagc gccgaaggtt gcgagctgat tttgtctgac ggcagacgcc tgattgacgg
    12001 tatgtcgtcc tggtgggcgg cgatccacgg ctacaatcac ccgcagctta atgcggcgat
    12061 gaagtcgcaa attgatgcca tgtcgcatgt gatgtttggc ggtatcaccc atgcgccagc
    12121 cattgagctg tgccgcaaac tggtggcgat gacgccgcaa ccactggaat gcgtttttct
    12181 cgcggactcc ggttccgtag cggtggaagt ggcgatgaaa atggcgttgc agtactggca
    12241 agccaaaggc gaagtgcgcc agcgttttct gaccttccgc aatggttatc atggcgatac
    12301 ctttggcgcg atgtcggtgt gcgatccgga caactcaatg cacaacctgt ggaaaggcta
    12361 tctgccagaa aacctgtttg ctcccgcccc gcaaagccgc atggatggtg aatgggatga
    12421 acgcgatatg gttggctttg cccgcctgat ggcggcgcat cgtcatgaaa tcgcggcggt
    12481 gatcattgaa ccgattgtcc agggcgcagg cgggatgcgc atgtaccatc cggaatggtt
    12541 aaaacgaatc cgcaaaatgt gcgatcgcga aggtatcttg ctgattgccg acgagatcgc
    12601 caccggattt ggtcgtaccg gcaaactgtt tgcctgtgaa tatgcagaaa tcgcgccgga
    12661 cattttgtgc ctcggtaaag ccttaaccgg cggcacaatg accctttccg ccacactcac
    12721 cacgcgcgag gttgcagaaa ccatcagtaa cggcgaagcc ggctgcttta tgcacgggcc
    12781 aacttttatg ggcaatccgc tggcctgcgc ggctgcaaac gccagcctgg cgattctcga
    12841 atctggcgac tggcagcaac aggtggcggc tattgaagta cagctgcgcg agcaacttgc
    12901 ccccgcccgt gatgccgaaa tggttgccga tgtgcgcgtg ctgggggcaa tcggcgtagt
    12961 cgaaacaact cgtccggtga atatggcggc gctgcaaaaa ttctttgtcg aacagggggt
    13021 atggatccgg ccttttggca aactgattta cctgatgccg ccctatatta ttctcccgca
    13081 acagttgcag cgtctgaccg cagcggttaa ccgtgcggtg caggatgaaa catttttttg
    13141 ccaataacgg gaagtcagcg tgtgggtttc tggctacact ttctgcaaac tagaaaggag
    13201 ggttcatgaa actcatcagt aatgatctgc gcgatggcga taagctgccg catcgtcatg
    13261 tctttaacgg catgggttac gatggcgata atatttcacc gcatctggcg tgggatgatg
    13321 ttcctgcggg aacgaaaagt tttgttgtca cctgctacga cccggatgcg ccaaccggct
    13381 ccggctggtg gcactgggta gttgttaatt tacccgctga tacccgcgta ttaccgcaag
    13441 ggtttggctc tggtctggta gcaatgccag acggcgtttt gcagacgcgt accgattttg
    13501 gtaaaaccgg atacgatggc gcagcgccgc cgaaaggcga aacccatcgc tacattttta
    13561 ccgttcacgc gctggatgta gagcatattg atgtcgatga aggagccagc ggcgcgatgg
    13621 tcgggtttaa cgttcatttc cactctctgg caagcgcatc gattaccgcg atgtttagtt
    13681 aatcactctg ccagatggcg caatgctatc tggtatcact taaaggtatt aaaaacaact
    13741 ttttgtcttt ttaccttccc gtttcgctca agttagtata aaaaagcagg cttcaacgga
    13801 ttcatttttc tatttcatag cccggagcaa cctgtgaaca cattttcagt ttcccgtctg
    13861 gcgctggcat tggcttttag cgtgacgctg accgcctgta gctcaacacc acccgatcaa
    13921 cgtccttctg atcaaactgc gcctggtacc tcttctcgcc cgattctgtc ggcaaaagaa
    13981 gcgcagaatt tcgatgctca acactatttt gcatccctga caccaggtgc tgcagcgtgg
    14041 aatccttccc cgattaccct gcctgcgcaa cctgactttg ttgtcggccc ggcgggcact
    14101 caaggtgtaa cgcataccac gattcaggcg gcggtagatg cggcaattat caagcgtacc
    14161 aacaagcgcc agtatattgc cgtgatgcct ggtgagtatc agggaacggt gtatgtccct
    14221 gctgctccgg gtggaattac tctgtacggt acaggtgaaa aaccgattga tgtgaagatt
    14281 gggctttccc ttgatggggg catgagccct gccgactggc gtcacgacgt caacccgcgc
    14341 ggcaaatata tgccaggtaa accagcgtgg tatatgtacg atagctgcca gagcaaacgc
    14401 agcgacagta tcggtgttct ctgctctgcg gtcttctggt cacaaaacaa tggcctgcaa
    14461 ctgcaaaacc tgaccatcga aaacacgctg ggcgatagcg tagatgcagg taaccatccg
    14521 gcggtggcac tgcgtactga tggtgaccag gtacagatta acaacgttaa cattctcggt
    14581 cgtcagaaca ccttctttgt caccaacagc ggtgtgcaga accgtctgga aacgaatcgt
    14641 cagccgcgta cgctggtgac caacagctac attgaagggg atgtggatat cgtttctggt
    14701 cgcggcgcag tggtgttcga taacaccgaa ttccgcgtgg tgaactcacg tactcagcaa
    14761 gaagcgtatg tgtttgcacc ggctacgctg tccaacattt actacggttt cctcgccgta
    14821 aacagccgtt tcaatgcttt cggtgatggt gtggcgcaac tgggccgctc gctggatgtt
    14881 gatgccaata ccaacggtca ggtggtgatc cgtgatagcg ccatcaacga aggttttaac
    14941 acggctaaac cgtgggccga tgcggtgatc tctaatcgtc cgtttgcggg taataccggc
    15001 agcgtagatg ataacgacga aatacagcgc aatctgaatg acactaacta caaccgcatg
    15061 tgggaataca ataaccgcgg cgtgggtagt aaagtggttg cagaggcgaa gaagtaagag
    15121 caattaacta tttgccggat gcggcgtaaa cgccttatcc ggcctacggt tcgatgcgat
    15181 ttgtaggtcg gataagatgc gcaagcatcg catccgacaa taagtgccga atgcgaccta
    15241 cattcacatg gcgcttttta catctgacgg tttttattga agttaatcaa actacccgcc
    15301 ttgataatct cgcgctcttc agcagtcaga ctttccatat agagcgtaat ttccgttacc
    15361 ggcgcatctt catggatcac ataaccttta aacgtcgtac ccggattatc cagcgccgct
    15421 ttaatgccag ggatgtaaat gtaatccccc acttcaaagg ttggcacttc cgccatctgc
    15481 agcggtaaca tcccccagtt gatgacgtta gaacggtagc gtttagtcgc gtactcttcg
    15541 gcaatattcg ccagaccgcc aatcacacgc tggcagctcg ccgcctgttc acgcgcagaa
    15601 ccatcgcctg gtttcaccgc atataccatg ctgccaattt cagtttgcag cggatcaata
    15661 tgctcctgac cagcaatctg cttaatgcgc gcaaacacct ctgtcagctc gctgacattc
    15721 cccgccagac gctgattttc cagctcagca gtcgctttac ttctgccaac ataaccggga
    15781 tcgcggcgtg acagggtaaa ctccgccaga ccaatcggat ttgaacgata agaagaggtt
    15841 tcaccggaag gaatcagttc gtcggtggtg gtcacttcgt cgaggatctt cgagcacact
    15901 ttcaggacga tattgtcagt cagcgcaccc aattccggcc agtctttaat gttcggtccg
    15961 taaatcagcg gttgctgagt tgcccctttc acaaagccct gataaacacg gtttttatac
    16021 ggcgttacat cgaaggcgta ctccggcacg ttgtcccagc aatcaagttc gctggcagag
    16081 gttaaatagc caccgtttgc cgcagtcgca gcgatagaac gagcgtccat caacgccacc
    16141 gctgacatct gcccattagc tggcttagag ccttcgcggt tcgggaagtt acgcgtggtg
    16201 tggcgaatac ttaatccgtt gttgattggc gtatcgcccg cgccaaagca tgggccgcag
    16261 aacgcggttc tgatgattgc gcctgcgcca atcaaatctg ctaccacacc ttttttggct
    16321 aaatccataa acaccggctg tgatgacggg taaaccgcca gcgagaaggt gtcattgcca
    16381 caggattgac cgcgcagtgc attcgccgcc gcgatgacgt tttcgtagtt accgccagaa
    16441 cagcccgcga taatcccctg ctgcactttc aggcgaccat tttccacttt atccagcagc
    16501 gagagtttgg ctttaccgtg cgccacgcgt tcggactcaa tttcaatctc acgcagaatg
    16561 tcggtcaggt tctggttcag tgtgtcgatt tcatacacgt tgctcgggtg gaacggcagc
    16621 gcaatcattg gtttgatggc gcttaaatca acgctgatgc agccatcgta gtacgccatc
    16681 ggttgagggt taagctggca gtaatcctgg ccgcgaccgt gcagcgccag ccagttatgc
    16741 acttcttcat cagtttgcca gacggagctt aaacaggtgg tttccgtggt catcacgtca
    16801 acgctgttac ggaaatcggt agagagcgcg ctaacgcccg gtccaacgaa ctccatgact
    16861 ttgtttttga cgtaaccgtt tttgaacacc gcgccaatga tagccagcgc cacatcctgt
    16921 ggccccacat acggcgcagg ttttccggtc agatgcaccg caaccacgcc cggatagtcg
    16981 atatcccagg tgtcattaag cagctgtttt accaactcac cgccgccctc accgactgcc
    17041 attgtcccta atgcaccgta acgggtgtgg ctgtctgacc cgaggatcat tttgcccccg
    17101 cctgccatca tctcacgcat atattgatgg atgatcgcaa tatgcggagg cacaaaaata
    17161 ccgccataac gctgagctgc cgataaacca aaaacatggt catcaccgtt aatggtgccg
    17221 ccgacggcgc agagtgagtt atggcagttg gtcagcacat acggcagcgg gaaacgttcc
    17281 attccggacg ctttagcggt ctgtacaata ccaacaaagg taatatcgtg agaggctaat
    17341 gaatcaaact taattttaag tttatccata tttccggacg tattatgaga agagagaata
    17401 gaccaggcaa tagtgccttt tttggcttct tcttttttaa tttcgccggt gaaatgttct
    17461 tcggcaatta tttcgttatt actggcgaga aacacgcct
//
LOCUS       DAJVUP010000082        17495 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.082, whole genome shotgun sequence.
ACCESSION   DAJVUP010000082 DAJVUP010000000
VERSION     DAJVUP010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17495
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.082"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..642)
                     /locus_tag="OQQ75_002474"
     CDS             complement(<1..642)
                     /locus_tag="OQQ75_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HCS1976763.1"
                     /translation="MSLNFTVIVWLRLSIGGVYELAFCRSSLKSKKYFIILLALAAIA
                     GLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKG
                     TQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAI
                     KDLQSKAPDKNIVIFTHNHCLTYIAKNKRDATFKPDYLDGLVMHVEKGKVYLDG"
     gene            893..2032
                     /gene="arnB"
                     /locus_tag="OQQ75_002475"
     CDS             893..2032
                     /gene="arnB"
                     /locus_tag="OQQ75_002475"
                     /EC_number="2.6.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_024188371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4-deoxy-L-arabinose
                     aminotransferase"
                     /protein_id="HCS1976764.1"
                     /translation="MSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQ
                     LTGNQHAIAVSSATAGMHITLMALEIGKGDEVITPSLTWVSTLNMISLLGATPVMVDV
                     DRDTLMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVG
                     TYYKGRHIGAKGTAIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDR
                     QTWGRAPQAEVLTPGYKYNLTDINAAIALTQLAKLEHLNTRRREIAQQYQQALAALPF
                     QPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYR
                     ERFPTLSLPNTEWNSERICSLPLFPDMTTADADRVITALQQLAGQ"
     gene            2036..3004
                     /gene="arnC"
                     /locus_tag="OQQ75_002476"
     CDS             2036..3004
                     /gene="arnC"
                     /locus_tag="OQQ75_002476"
                     /EC_number="2.4.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate
                     4-deoxy-4-formamido-L-arabinose transferase"
                     /protein_id="HCS1976765.1"
                     /translation="MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEIL
                     LIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDAD
                     LQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYG
                     CMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLI
                     NLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAV
                     LFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE"
     gene            3004..4986
                     /gene="arnA"
                     /locus_tag="OQQ75_002477"
     CDS             3004..4986
                     /gene="arnA"
                     /locus_tag="OQQ75_002477"
                     /EC_number="1.1.1.305"
                     /EC_number="2.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-amino-4-deoxy-L-arabinose
                     formyltransferase/UDP-glucuronic acid oxidase ArnA"
                     /protein_id="HCS1976766.1"
                     /translation="MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGS
                     VAHLAAERGIPVYAPDNVNHPLWVERIAQLSPEVIFSFYYRHLICDEILQLAPAGAFN
                     LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRVAIAPDDIAIT
                     LHHKLCHATRQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLH
                     NMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISIAPLLIACGDGALEI
                     VTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTER
                     LLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI
                     ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSN
                     LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGS
                     SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG
                     NPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIR
                     NAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS"
     gene            4983..5873
                     /locus_tag="OQQ75_002478"
     CDS             4983..5873
                     /locus_tag="OQQ75_002478"
                     /EC_number="3.5.1.n3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HCS1976767.1"
                     /translation="MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDN
                     MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE
                     VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE
                     AKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKTEDFNGWLL
                     NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV
                     RGNIAGREGWLGCQQIAGSR"
     gene            5873..7525
                     /gene="arnT"
                     /locus_tag="OQQ75_002479"
     CDS             5873..7525
                     /gene="arnT"
                     /locus_tag="OQQ75_002479"
                     /EC_number="2.4.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A)
                     4-amino-4-deoxy-L-arabinosyltransferase"
                     /protein_id="HCS1976768.1"
                     /translation="MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLA
                     SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT
                     LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG
                     KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT
                     VLPWGLAIAQREPDFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP
                     GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA
                     AKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLW
                     AFFGWYTLTNVEKTWSFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR
                     YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR
                     QEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK"
     gene            7522..7857
                     /gene="arnE"
                     /locus_tag="OQQ75_002480"
     CDS             7522..7857
                     /gene="arnE"
                     /locus_tag="OQQ75_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnE"
                     /protein_id="HCS1976769.1"
                     /translation="MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLAL
                     ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG
                     GIVILGSTV"
     gene            7857..8243
                     /gene="arnF"
                     /locus_tag="OQQ75_002481"
     CDS             7857..8243
                     /gene="arnF"
                     /locus_tag="OQQ75_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311173.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnF"
                     /protein_id="HCS1976770.1"
                     /translation="MGLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFG
                     LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFS
                     LKALLGVACIMSGLMLIFLPTTKQRY"
     gene            complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="OQQ75_002482"
     CDS             complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="OQQ75_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416762.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein PmrD"
                     /protein_id="HCS1976771.1"
                     /translation="MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGD
                     LLSPLQNALYCINREKLHTVKVLSASSYSPDEWERQCTAAGKTQ"
     gene            complement(8613..9968)
                     /gene="menE"
                     /locus_tag="OQQ75_002483"
     CDS             complement(8613..9968)
                     /gene="menE"
                     /locus_tag="OQQ75_002483"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HCS1976772.1"
                     /translation="MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGF
                     AAQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQY
                     ALVLEGENTFPALTSLHIQMVEGTHSALWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL
                     ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC
                     THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS
                     TVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT
                     RDRGEMHNGKLTIVGRLDNLLFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGH
                     RPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ
                     Q"
     gene            complement(9965..10927)
                     /gene="menC"
                     /locus_tag="OQQ75_002484"
     CDS             complement(9965..10927)
                     /gene="menC"
                     /locus_tag="OQQ75_002484"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HCS1976773.1"
                     /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE
                     ISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELLQMPSIAFGVSCALAELADTLPQAA
                     NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL
                     DANRAWTPLKGQQFAKYVNPDYRHRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE
                     PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALRLTAVISSSIESSLGLTQLAR
                     IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL"
     gene            complement(10927..11784)
                     /gene="menB"
                     /locus_tag="OQQ75_002485"
     CDS             complement(10927..11784)
                     /gene="menB"
                     /locus_tag="OQQ75_002485"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HCS1976774.1"
                     /translation="MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV
                     RNAFRPLTVKEMIQALADARYDDNVGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG
                     VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG
                     SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC
                     REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP
                     DFSKFKRNP"
     gene            complement(11799..12557)
                     /gene="menH"
                     /locus_tag="OQQ75_002486"
     CDS             complement(11799..12557)
                     /gene="menH"
                     /locus_tag="OQQ75_002486"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HCS1976775.1"
                     /translation="MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY
                     VDLPGHGGSAAISVDGFDEVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAG
                     LCGVIVEGGHPGLQNAEQRAERQRSDRQWAQRFRTEPLTAVFADWYQQPVFASLNDDQ
                     RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA
                     ELAADCHVIPRVGHNAHRENPAGVIASLAQILRF"
     gene            complement(12554..14224)
                     /gene="menD"
                     /locus_tag="OQQ75_002487"
     CDS             complement(12554..14224)
                     /gene="menD"
                     /locus_tag="OQQ75_002487"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HCS1976776.1"
                     /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN
                     SAFIHHTHFDERGVGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL
                     LTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH
                     AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPSLESEKQRDWFFWR
                     QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL
                     QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL
                     ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRISDYLPEQGQLFVGNSL
                     VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN
                     ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY
                     HRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL"
     gene            complement(14313..15608)
                     /gene="menF"
                     /locus_tag="OQQ75_002488"
     CDS             complement(14313..15608)
                     /gene="menF"
                     /locus_tag="OQQ75_002488"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HCS1976777.1"
                     /translation="MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWL
                     ASQQTYPQFYWQQRNGDEEAAVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDP
                     SQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTT
                     TREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLN
                     LNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLEEWLM
                     ADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI
                     CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKIS
                     GNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME"
     gene            complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="OQQ75_002489"
     CDS             complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="OQQ75_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein ElaB"
                     /protein_id="HCS1976778.1"
                     /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAE
                     KALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR"
     gene            complement(16047..16508)
                     /locus_tag="OQQ75_002490"
     CDS             complement(16047..16508)
                     /locus_tag="OQQ75_002490"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1976779.1"
                     /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL
                     TGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLDT
                     CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA"
     gene            16573..17490
                     /gene="rbn"
                     /locus_tag="OQQ75_002491"
     CDS             16573..17490
                     /gene="rbn"
                     /locus_tag="OQQ75_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease BN"
                     /protein_id="HCS1976780.1"
                     /translation="MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ
                     HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE
                     TALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALN
                     AQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA
                     ALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD
                     DKGCQHLLRECRSIFPATELANDFTVFNV"
BASE COUNT         4113 a         4698 c         4437 g         4247 t
ORIGIN      
        1 cccatccaga taaactttgc ctttttccac atgcatgact aaaccatcca gataatcagg
       61 tttaaatgtc gcatcacgct tatttttagc aatatatgtc aggcaatgat tatgggtgaa
      121 aataacgata tttttatcag gcgctttgct ttgtaagtcc ttaattgcac tataaatctc
      181 attaccgcac tgaagaagtc gtttatctac cgtcagcttt ttacccgcgg aaaaccaggt
      241 cgccgactga atggtccgga cggtattact ggaataaaga tcgaaatcag ggatgtcagc
      301 gctaaaagcg ttgcccagtt cacgggcatc ctgggtacct ttaaccgtaa tacctgtttt
      361 atctgacaag cattgattgg ttgaacgatc gcaacgttca gcatggcgaa acaaaacgac
      421 aaccgggtgc tgctgtgcca gtctggccaa tgttttattg tcgatacgtg gcaaaccatt
      481 gctactccag gcggcatgag tacccagtcc ggcaattgca gcgagcgcca gtaaaatgat
      541 gaaatatttt tttgacttca atgatgagcg gcaaaaagct aactcgtaaa ctccacctat
      601 agacaagcgc aaccagacaa ttaccgtgaa attgagcgac atttctggcg ataattagca
      661 gttggtgtaa tattaaaaat cctacgatgt cggcaaaatg cctcaaaatt ttgccaaatg
      721 caaagcctaa ataagaaaaa atataaaaat ttcaatattt acgtctaata ttagtttctt
      781 aaggttaagt taatattcta tccttaaaat ttcgttccaa atggcaaaat atacacaaca
      841 ctctttatag caaatataag tggacaggta ttcaatggcg gaaggaaaag caatgtcaga
      901 atttttgcct ttttcgcgac cagcaatggg cgtggaggaa ctcgctgcag ttaaagaagt
      961 tctcgaatcc ggttggatca caaccggtcc gaagaatcag gcgcttgagc aagccttttg
     1021 ccagttgacg ggaaatcagc atgccatcgc ggtcagttca gccaccgccg gaatgcatat
     1081 cacgctaatg gcgttggaaa ttggcaaggg cgatgaagtg attacgcctt ccctgacctg
     1141 ggtttcaacc ctcaatatga tttccttgtt gggtgcaacg ccggtaatgg tggatgtcga
     1201 ccgcgatacg ctgatggtca cgcctgaagc gatcgagtca gccattacgc cacgcactaa
     1261 agccatcatt ccggtgcatt atgccggtgc gccagcagat attgacgcca ttcgcgccat
     1321 tggcgaacgt tacggcatcg cagttatcga agatgctgcc catgccgtcg gtacgtatta
     1381 caaagggcga catattggcg caaaaggtac cgctattttt tcatttcatg ccattaaaaa
     1441 tattacctgt gcggaaggtg gcctgattgt aactgataat gaaaaccttg cccgccagct
     1501 acggatgctg aaatttcacg gcctgggtgt cgatgcctat gacagacaaa cctggggccg
     1561 agcaccgcag gctgaagtct taacaccggg ctataagtac aatctgaccg atattaacgc
     1621 cgcaattgcc ctgacacagt tagcaaaatt agagcacctc aacacccgtc ggcgcgaaat
     1681 tgcccagcaa tatcagcaag cactggctgc tctccccttt cagccattaa gccttcccgc
     1741 ctggccgcac gttcacgcct ggcatctgtt tattattcgt gtcgatgaac aacgttgtgg
     1801 tatcagtcgc gatgcgttga tggaagcgtt aaaagaaaga ggcattggta ccgggttaca
     1861 tttccgcgcc gctcacacac aaaaatatta tcgcgagcgt tttcccacgc tgtcgttacc
     1921 gaataccgaa tggaatagcg aacgcatctg ttctttgccg ctgttcccgg atatgactac
     1981 cgccgatgcc gaccgtgtca tcacagccct tcagcaactc gcaggacaat aagccatgtt
     2041 tgaaatccac cctgttaaga aagtctcggt ggttattccc gtttataacg agcaggaaag
     2101 cttaccggaa ttaatcaggc gcaccaccac agcctgtgaa tcgttgggga aagagtatga
     2161 gatcctgctg attgatgacg gcagtagcga taattccgcg catatgctgg tcgaagcctc
     2221 acaagcggag aacagccata ttgtgtctat tttgcttaac cgcaattacg ggcaacattc
     2281 agcgattatg gcgggattca gtcacgttac tggcgactta attattaccc ttgatgccga
     2341 tctccagaat ccgccagaag aaatcccccg cctagtggca aaagccgatg aaggttacga
     2401 cgtggtaggg actgtacgcc agaaccgcca ggacagctgg tttcgtaaaa cagcttcgaa
     2461 gatgattaac cggcttattc agcgcaccac cggcaaagcg atgggtgact acggttgtat
     2521 gctgcgcgcc tatcgccgtc atattgtcga tgcgatgttg cactgccatg aacgtagcac
     2581 ctttatcccg attctggcga atatcttcgc ccgccgtgcc attgaaattc cagtacatca
     2641 tgccgagcgt gagtttggtg aatccaaata cagttttatg cgcctgatta atttgatgta
     2701 cgacctggtg acctgcctta ccacaacgcc gctacgtatg ctgagtctgc tcggcagcat
     2761 tattgcgatt ggaggtttta gcattgcggt gctgctggtg attttacgcc tgaccttcgg
     2821 accacaatgg gcggcagaag gcgtctttat gctatttgcc gtgctgttta cttttattgg
     2881 cgctcagttt atcggcatgg gattactcgg tgaatatatc ggcaggatct acaccgatgt
     2941 ccgcgcccgc ccccgctatt ttgttcagca agttatccgt ccatccagca aggaaaatga
     3001 ataatgaaaa ccgtcgtttt tgcctaccac gatatgggat gcctcggtat tgaagctctg
     3061 ctggctgccg gttacgaaat tagcgccatt tttacccata ccgataatcc cggtgaaaaa
     3121 gccttttatg gttcggtggc tcatctggcg gcggaaagag gcattccggt ttatgcgccg
     3181 gataacgtta atcatccgct gtgggtggaa cgcattgccc aactgtcacc agaggtgatt
     3241 ttctcttttt attatcgcca tcttatttgc gacgagattt tgcagctcgc tcccgcaggt
     3301 gcatttaatc tgcacggttc gctgttacca aaatatcgtg gtcgcgcgcc gctgaactgg
     3361 gtgctggtga acggtgaaac ggaaacgggc gttacattgc accgaatggt aaaacgtgcc
     3421 gatgctgggg ccattgtggc gcaactgcgc gttgccattg cgccagacga tatcgctatt
     3481 acgctgcatc ataaattgtg ccatgccacg cgccagctac tggaacagac attacccgcc
     3541 attaaacacg gtaatattct ggaaatcgcc cagcgcgaaa acgaagccac ctgttttggt
     3601 cgcagaacgc cggatgacag tttccttgaa tggcataaac cggcatccgt actgcacaac
     3661 atggtacgtg ccgttgccga tccgtggccg ggtgccttca gctatgttgg caatcagaaa
     3721 ttcaccgtct ggtcgtcgcg tgttcatcct catgccagca aagcacagcc ggggagcgtg
     3781 atttctattg caccgctgtt gattgcctgt ggcgatggcg cgctggaaat cgtcaccgga
     3841 caggcgggcg acggcattac tatgcagggc tcgcaattag cgcagacgct gggcctggtg
     3901 caaggttcac gcttgaatag ccagcctgcc tgcaccgccc gacgccgtac ccgggtactc
     3961 atcctcgggg tgaatggctt tattggcaac catctgacag aacgcctgct gcgcgaagat
     4021 cattatgaag tttacggtct ggatattggc agcgatgcga taagccgttt tctgaatcat
     4081 ccgcattttc actttgttga aggcgatatc agtattcatt ccgaatggat tgagtatcat
     4141 gtcaaaaaat gtgatgtcgt cttgccgctg gtggcgatag ccacgccgat tgaatatacc
     4201 cgcaacccgc tgcgcgtatt tgaactcgat tttgaagaga atctgcgcat tatccgctac
     4261 tgcgtgaagt accgtaagcg aatcatcttc ccgtcaactt cagaagttta tgggatgtgt
     4321 agcgataaat acttcgatga ggaccattct aatttaatcg tcggcccggt gaataaacca
     4381 cgctggattt attcggtatc aaaacaatta cttgatcggg tgatctgggc ctatggcgaa
     4441 aaagagggtt tacagttcac cctcttccgc ccgtttaact ggatgggacc acgactggat
     4501 aaccttaatg cggcacgaat cggcagctcc cgcgctatta cgcaactcat tctcaatctg
     4561 gtagaaggtt caccgattaa gctgattgat ggcggaaaac aaaaacgctg ctttactgat
     4621 attcgcgatg gtatcgaggc gttataccgc attatcgaaa atgcgggaaa tcgctgcgac
     4681 ggtgaaatta tcaacattgg caatcctgag aacgaagcga gcattgagga actgggcgag
     4741 atgctgctgg cgagcttcga aaaacatccg ctgcgccatc atttcccacc gtttgcgggc
     4801 tttcgcgttg tcgaaagtag cagctactac ggcaaaggat atcaggacgt agagcatcgt
     4861 aaaccgagca tccgcaatgc ccaccgctgc ctggactggg agccgaaaat tgatatgcag
     4921 gaaaccatcg acgaaacgct ggatttcttc ctgcgcaccg ttgatcttac ggataaacca
     4981 tcatgaccaa agtaggctta cgcattgatg tcgatacctt tcgtggcacc cgtgaaggcg
     5041 tgccgcgtct gctggaaatc ttgagtaagc ataatattca ggccagcatt tttttcagcg
     5101 tcggcccgga caatatgggc cgccatctct ggcgactggt gaagccacag tttttgtgga
     5161 agatgctgcg ctcaaacgcg gcatcgcttt atggctggga tattttactg gcaggtacgg
     5221 cctggccagg taaagagatt ggtcatgcca atgccgatat cattcgtgaa gcggctaaac
     5281 atcacgaagt cggcctgcac gcctgggatc accatgcctg gcaagcccgt agcggtaact
     5341 gggatcggca aacaatgatc gacgatattg cacgcggtct tcgcactctg gaagagatta
     5401 tcggtcaacc ggtaacctgt tctgccgctg cgggctggcg tgccgaccag aaggtgatcg
     5461 aagcaaaaga agcgttccat ttgcgctaca acagcgattg tcgtggggcc atgccgttcc
     5521 gtccattgct cgaatcagga aaccctggca ctgcgcaaat tccggtgacc ttacccacct
     5581 gggatgaagt gattggtcgg gatgtgaaaa cagaagattt taacggttgg ttactcaacc
     5641 gcatcctgcg agataaaggc acgccggttt ataccattca tgcagaagtt gaaggctgcg
     5701 cttatcagca taattttgtg gatctcctca aacgcgcagc tcaggaaggc gtgacatttt
     5761 gccctttaag cgaactgtta tcagagacgt tgccgctcgg acaagttgtt cgcggaaata
     5821 ttgccggacg tgaaggctgg ctgggttgcc aacaaattgc gggtagtcgc tgatgaaatc
     5881 ggtacgttac cttatcggcc tcttcgcgtt tattgcctgc tattacctgt taccgatcag
     5941 cacgcgtctg ctctggcaac ccgatgaaac gcgttatgcg gaaatcagtc gagaaatgct
     6001 ggcatccggc gactggattg tgccccatct gttagggcta cgttatttcg aaaaacccat
     6061 tgccggatac tggattaaca gcattgggca atggctattt ggcgcgaata actttggtgt
     6121 gcgggcaggc gttatctttg cgaccctgtt aactgccgcg ctggtgacct ggtttactct
     6181 gcgcttatgg cgcgataaac gtctggctct actcgccaca gtaatttatc tctcattgtt
     6241 tattgtctat gccatcggca cttatgccgt gctcgatccg tttattgcat tctggctggt
     6301 ggcgggaatg tgcagcttct ggctggcaat gcaggcacag acgtggaaag gcaaaagcgc
     6361 aggattttta ctgctgggaa tcacctgcgg catgggggtg atgaccaaag gttttctcgc
     6421 ccttgccgtg ccggtattaa gcgtgctgcc atgggtagcg acgcaaaaac gctggaaaga
     6481 tctctttatt tacggctggc tggcggttat cagttgcgta ctgacggttc tcccttgggg
     6541 actggcgata gcgcagcggg agcctgactt ctggcactat tttttctggg ttgagcatat
     6601 tcaacgcttt gcactggatg atgcccaaca tagagctccg ttctggtact acgtgccggt
     6661 catcattgcc ggtagcctgc cgtggctggg attactcccc ggtgcactgt acacaggctg
     6721 gaaaaaccgc aagcattccg caaccgtcta tttgttgagc tggacgataa tgccgctgct
     6781 gtttttctcc gtcgctaaag gtaaattgcc cacctatatt ctttcctgct ttgcatctct
     6841 ggcaatgctg atggcgcatt acgctttgct ggcagcaaaa aataatcctc tggcgctgcg
     6901 gattaatggc tggattaaca tcgcttttgg cgtcactggc attattgcca catttgtggt
     6961 ctccccgtgg ggaccaatga acacgccggt gtggcaaacc ttcgagagct ataaagtctt
     7021 ttgtgcctgg tcgatttttt cgctatgggc atttttcggc tggtacacct taacaaacgt
     7081 cgaaaagacc tggtctttcg ccgcgctttg cccgctgggg ctggcgttgc tggtaggatt
     7141 ttcaattcct gacagagtca tggaaggaaa acatccgcaa ttttttgtcg agatgacaca
     7201 agaatcactt caaccaagcc gctatattct tactgatagc gtcggtgttg ccgcaggtct
     7261 ggcatggagc ctgcaacgcg atgacatcat catgtatcgc cagacaggtg agttgaaata
     7321 cggccttaat tatccggatg cgaaagggag atttgtcagc ggtgatgagt tcgcaaactg
     7381 gcttaatcaa catcgtcagg aggggattat tacactcgtg ctttcggttg accgcgatga
     7441 agatatcaac agtctcgcca ttccgcccgc agatgccatc gatcgtcagg agcgtctggt
     7501 gctgattcag tatcgtccca aatgatctgg ctaacattag tctttgccag cttgcttagc
     7561 gttgccgggc agttgtgtca gaaacaggca acctgctttg tggcgataaa caaacggcgc
     7621 aaacatatcg tgctgtggct gggactggcg ctggcttgtc ttggtcttgc catggtgctc
     7681 tggctgctgg tcttgcagaa cgtaccggta ggcattgcct acccgatgtt aagtctgaat
     7741 tttgtctggg tgacgctggc tgcagtaaaa ctgtggcacg aaccggtatc gccgcgtcac
     7801 tggtgtgggg tggcgttcat tattggtggc attgtgatcc tcgggagtac ggtgtaatgg
     7861 gcctgatatg gggattattc agcgtcatta ttgcctcagt tgcgcaatta agcctgggtt
     7921 ttgcggcaag tcatctgccg ccgatgacgc acttatggga ttttatcgcg gctctgttag
     7981 cttttggcct ggatgcccgg atactgttac tcgggctgct gggttatctg ctttccgttt
     8041 tttgttggta taaaacgcta cataaacttg cgctaagcaa agcctatgcc ttgctcagta
     8101 tgagttatgt gctggtatgg attgcttcaa tggtacttcc cggctgggaa gggacttttt
     8161 cgctgaaagc actactggga gtagcctgta ttatgagcgg gttgatgctg attttcctgc
     8221 ccacgacaaa acaacgttac tgagttttcc ctgccgctgt acactgccgt tcccactcat
     8281 cggggctata actgcttgcc gagaggactt tcaccgtatg cagcttttca cgattaatac
     8341 aataaagcgc attctgcaaa ggcgagagta aatcccccac tttcacggcg aagtcactct
     8401 tcacttcggc gatcattttt atcgcgccgc cagcatcgca gagcataagt acatgtctgt
     8461 tatcttgttt attgcagcac gattttttga ccagccattc cattgcatta tcctgtttgc
     8521 taagagtttt cacatcaatt tacagattaa cagataaact ctttatcaac ggcaatggaa
     8581 tggcagaaat gagaagtgaa acggagggtt aattattgct gacgttgcac ccactctttt
     8641 agcgcctgac gtgaaatttt aataccgccg tttttcagct ccggcggtaa agtcagccag
     8701 cgcaccggtt gttgaaaacg agccagctta tctttcaccc attcgccaag atcaacggtt
     8761 tgctggtcat actccaccac cgctaccggc cgatgaccaa actccttgtc ggcaacggga
     8821 acgataaaca cctgcaaaac cgcaggatgt gcagcaataa cacgctcgac ttcttccggc
     8881 tgaataccct caccgccact gaataacaga ttgtctaaac gtccgacaat ggtcagcttg
     8941 ccattatgca tctcaccgcg atcgcgcgta gcgtaccagc cttcgtcatt aaccagtgaa
     9001 accagttgcc cgttacgcca gtaaccttct gccatactgg cagcccgcag ccacacttca
     9061 ttattaacga ttttcacttc ccgacccggc agcggcgaac caacgtctgc caggccgtcg
     9121 gcttctttcg cacataccgt ggaggcaaac tcggtcagac catagccgca aaagcaacga
     9181 atcccctgct cgcgcgcctg ttccgtcaac tcgaccggga tagccgcgcc gccaagtaac
     9241 accgctttca gggaaacgga actgcggtta accagcaaac gccagagttg tgttggcacc
     9301 agtgaagcgt gagtacagcc tgccagcatt tgctccaatg gctgtttatc acgcaccgtc
     9361 atccgcgcac cagcgtataa ccagcgccac ataattccct gaccggagac gtgaaacagc
     9421 ggtaaagaga gcaaccagtc atcgtgatcg ccaaacggaa tcagcgataa cacaccttgc
     9481 gcactggcaa gatgggcctg ataagtatgg acagcggctt tcggtaaacc ggtggagccg
     9541 gaggtcaatg tcattgaaca aagacgtgtt ggttgccaca gagctgaatg tgtgccttca
     9601 accatctgaa tatgcagtga agttaacgcc gggaaagtat tttctccttc cagcaccagc
     9661 gcatattgca gtgtaagatt tggcagtaat tcctcaagca acggttgcgg aagctgtgga
     9721 tttacgggca gcacccgcgc cccgcattgc agtaacgcca gccaggcgag cagcgtttgc
     9781 ggcgtattcc acgcccgcaa catcacgccg ctgccctcaa ccacaccctg cgccgcaaag
     9841 cccgtagcta actcatcgac gcgagcacaa agctcgcgcc agttgagttg ctcgtcatta
     9901 agacgtaagg cgatggcttc tccccgcact tgccgccagt gacgccacgg ccagtcagag
     9961 aagatcataa caaccgctcc agtgcatcaa cttccacgac aggcagcgtg ctacccggcc
    10021 agcgacgtac ctgctgcgcc tgcatcagat ccagcgtgtc cagccctgga atggtgtccg
    10081 gcgttaacca ggcggcaatc cgcgccagtt gcgttaagcc taagctcgac tcaatagaag
    10141 aactgatcac cgccgtcagc ctcaacgcgt gcgccgcctg tacctgctcg cgtacttttt
    10201 ccagactgcc cgtgagcgtg ggtttgataa ctaccgcgcg cacgccctct tcagccacaa
    10261 aggcaaaatc cggctcgcgc aggctttcat cccaggcaat ggcaatgccg gtttcacggg
    10321 caaacgctcg cgaatcatcg cgggttttgc acggctcttc gagaaacgcg atgcggtggc
    10381 gataatccgg gttaacatat ttggcaaact gctgaccttt cagcggtgtc caggcgcgat
    10441 ttgcgtcaag acgcaaatgc agatccggaa ttgcctccag caacagatta accaccatgc
    10501 cgtcgcgcac ggcttcgtac aatcccactt tgaccttcgc cactttctcg cctggcatat
    10561 cagcaagttt gaggatcaga tcgtcaggat cgccattaca cagtggtgcc gcacggtaat
    10621 tggccgcctg cgggagcgta tctgccagct ccgccaatgc acagcttacg ccaaaggcaa
    10681 tggaaggcat ctgcagtagc tcgcaatcgc ctgccagcca gttatttacc caggcaagca
    10741 gcacgctttg cgcctcttcc caggtttcct ggctgaagcc cggcagtggg gagatctccc
    10801 cccacccttc gcgctcgccc tcacgcaggc aaacgtacag cccgtcgcgg gtttttaacc
    10861 gcctgtcgcg cagaaccacc cccgcgtcca tggggatctg ccagcggtat acctgcgcgc
    10921 tacgcattac ggattccgtt taaatttgct gaaatcaggc tgacgtttct ggttgaaagc
    10981 gttgcgacct tcctgacctt cttccgtcat gtagaacagc atggtggcgt tgcccgccag
    11041 ctcctgcagc cccgcctgcc cgtcacagtc ggcgttcagt gcagctttca ggcagcgcag
    11101 cgccatcgga ctgttttgca gcatttcgcg gcaccagcga acggtctctt tttccagatc
    11161 cgccagcggt accacggtgt tgacaaggcc catatccagc gcctgtttcg cgtcgtactg
    11221 acggcacagg aaccagattt cccgcgcttt tttctgtccg acgatgcgag ccatgtagga
    11281 agcgccccag ccgccgtcga aggaaccgac tttcgggcca gtctgaccga agatggcatt
    11341 atctgccgcg atagtcaggt cgcacatcat gtgcagaacg tgaccgccgc cgatggagta
    11401 gccagccacc atcgcgacaa ccggtttcgg acaggtacgg atctgacgct ggaagtccag
    11461 cacgttcagg tgatgtacgc cggaatcatc tttatagccg ccgtaatcac cacgcacttt
    11521 ctggtcaccg ccggagcaga acgctttatc acctgcgcca gtcagaatga tcacgccgac
    11581 gttgtcgtca taacgcgcat ctgccagtgc ctggatcatc tcttttaccg tcagaggacg
    11641 gaaggcattg cgcacctgcg gacgattaat ggtgattttt gcgataccat cggtggattt
    11701 ttcataacga atgtcctcga aaccttcgga gcagtcgtgc cattcaaccg gtgcgtaaag
    11761 cattgcttca tcaggataaa tcatattgtg tcctttagtc agaaacgcaa gatctgcgcc
    11821 agacttgcga ttacgccagc gggattttcc cgatgcgcgt tatgtccgac gcgaggaatg
    11881 acatggcagt cggcagccag ttccgccgcc agggcgcgga atttgctgtc acgttcacca
    11941 cataaataat aaaacgcaaa tgtgcgggcg ctaaggttag cacgtaaatc aggctggacg
    12001 gcgagagaag tcgcctccag catggcggca agggttgcgc cattattgtt gctgcgcagc
    12061 gccaccagct cccggcgttg atcgtcattg agcgaggcaa aaacaggctg ttgataccag
    12121 tcggcaaata ccgccgttaa cggttctgtg cgaaaacgct gcgcccattg gcgatcggaa
    12181 cgctgacgtt ccgcacgttg ttcagcattt tgcagccccg gatgcccgcc ttcgacaata
    12241 accccacaaa gccccgccag cccctggcaa gccgccatca tcgccacccg tccgccaagc
    12301 gagtacccca ccagccagaa gtcaaggatg ttgtaactaa ccaaggtttt acgcagtaag
    12361 tcggtgacct catcaaatcc atcgacgcta atcgccgccg aaccaccatg acctgggaga
    12421 tcaacataca accgtgagta gtcggcaaac gcctcgccca cttcttgcca ttcgtggcaa
    12481 tcgccggaaa aaccgtgcaa aaacaccagc cagggtaaac ctggttttcc gtgttttgcc
    12541 tgcgcgtgca ggatcataaa tggcttacct gcgccagaag ttgctggagc gtttgcgcac
    12601 catcggtgtc gttaaccacc atttcaatca ccgtggtggt tggcgtgcgc caggcgtcgg
    12661 caaatgccgt ttcaagttcc tgccagtttt gcggacgatg atatttcagc tcgaacatcg
    12721 cggcggcgtg ctcaaaatgg acgttttgcg gcatcagata gaaacgctca cgctcgcttt
    12781 gcggcgttgg caacagcgag aaaatttgcc cgccgttgtt gttcaccaca attaatacca
    12841 gcggcgcaga aacctgacgc aataacgcca gcgcgttgag atcgtaaagt gcggagagat
    12901 cgcccacaat cgccagcgtc ggtttgccgc ttgcccgctg aacgcctgcg gcggtcgaaa
    12961 gcagtccgtc gataccgctg gcccctcggt tgctgtacac cgggtaacct gccggaagtt
    13021 gcgaaagcgc atcaatcaga cgtaccacca ggctgttacc gacaaacaat tgcccctgtt
    13081 caggcagata gtcgctgatg cgatgcgcca gttgcgcttc gccaaacgca tcgcgacggg
    13141 caataaccgc ctgcattgcc tgttccgcca ggcgcgggat ttcaacgcac cagggctggc
    13201 gtttttctgc cggatgcagc tccagccagt cggcaatatt ggcaattaag cggcgtccac
    13261 gatggtgcgc cggatcaagc cgcccttcga tgtcatccac aatccagtac tcttcgggtt
    13321 cacagcttgc ctgccattgc aggagccgtt tgcccgtcag gctgcttccc agttgcacca
    13381 caatttgcgc ctgctgcagc tcgctggtcg ctttggcatt gcctaaccaa agatcggcac
    13441 acggcagcgg ctgcccggtt tgtgacagca catcgccaat cagcggccag ccaagagttt
    13501 gcgcccacag ggcaactttt ttgccctctt ccgcactcat gcgcccggca accaccacgc
    13561 cgcgcttttg tcgccagaag aaccagtcgc gctgtttttc actttccaga ctaggcgctt
    13621 cacgcagcca cggtttgtcg tcctgccacc agtcacccag acgctgttgc cagctaagcc
    13681 cggtatcgtc catttcgcca tacagcggtt cagcaaacgg gcagttgata tggactcccc
    13741 ccgcatgaag cgtaccgaga gcgtggtcga tggtagaaac cagccaacgt gcggggatat
    13801 cctgggtcgg gcgcggcaat gaaatactgt gcgtggggtg agaggcgaac attcccggct
    13861 ggcgaattgc ctgattcgcg ccgcagtcaa ttagctccgg cgggcgatcg gcggttaaga
    13921 gaatcagttt ttctccggtt aacccggctt caatcagtgc cggatagaga tttgccaccg
    13981 cagtgccgga ggtcacaatc accgccaccg gctgcttgct gactttcgcc agccccagcg
    14041 ccagatgccc caccccacgc tcatcgaaat gggtgtggtg aatgaatgcg gaattctccg
    14101 ccgccgctaa cgttaacggt gtagaacgcg agcctggggc gatacagatg tgtctgacgc
    14161 cgtgacgcgt taatgcttcc agaatgaccg ccgcccagcg tcggttaaat gcgcttactg
    14221 acatgagttt gtccggtatc aatattgcgg ctaagtataa ggagctacaa aaatagatta
    14281 ttgatatgaa tcggtaatga tgcgactcat tactattcca tttgtaataa agtacgcaac
    14341 cctgccgctt tgttgtcgat ttcctgccac tcttgctcgg ggtcggaacc acggacaatg
    14401 cccgcgccag catataatcg cacgacattg ccgctaattt ttgctgagcg cagggaaacg
    14461 cagaattcgc tttgttgtaa tgagagatag cccgcagaac cggcgtacca ttctcgggtg
    14521 aacggttcgt gacgggcgat aaactgtcgc gccagatcgc gcggtaagcc agcaactgct
    14581 gccgttggct gcaactgatg taaacagatc acatcatccg ctttgttgag tgaagtccag
    14641 atacagcggc gaagatgctg cactttacgc agacgcagta cctgcggcgg taaaacatcc
    14701 agcgtctggg tatcggcctg taatcgttgg cagatatctt ccaccaccag catgttctcg
    14761 cgctggtttt tatcatccgc catcagccac tcttctaact gctgcgcctg cttatcatca
    14821 ggatgatttg ctactgttcc cgccagcgct tcagtacgca gcgctttgtc acgccgccgc
    14881 cataaccgtt ccggtgaaga gccaagaaaa gcattttcgc catcaaaggc catgtaaaaa
    14941 tggtagcaat tcagattcag tcgacgactg gcagccatca tcgccgccgc gttgaccgga
    15001 cttgcgaaat gcaggtcagt tgcccgagcg agcaccactt tgtcgagctc accttcggcg
    15061 atggttttcg ttgccagttc gattaattgc gtccagcccg ttttgtccgg ccagtgttgt
    15121 tctcgcgtgg tggttaaatg taacccaggc aagggcttga tactcaccag tgtggcgata
    15181 aattcttttg cctgaatcgc atcgtgctga agggagcttt cgctgaatag cgtcagccgc
    15241 agcgtggctt taccgccaca gcgtcgccat tccaggcggg gtaaaagtaa attgccctgc
    15301 gacgggtcaa aagcattcag cccccaaatg cgtaagtcgg cgtgttccgg gtgctggcga
    15361 agaaaacgtt gtgcctggtc caacgacgta aaacgggtaa tcgcgcccag gacggcagct
    15421 tcttcatcac cattacgttg ttgccagtag aattgcgggt acgtttgctg actggccagc
    15481 cagctcaagg catcaaaagc gtctttgaga gggaaaggaa tatcgataac ccgaatgccg
    15541 ggtgtcgccg gaatctcttg cgacaaatgg cgcagtagat tttccagcgc cgtagtaagt
    15601 gattgcacgc ggacctctcc ctgttaaaag cctcacatta tacggggtac tacaaaaaaa
    15661 atgcagtacc ccggtgtagg gaggttttaa cggcgtgcca gcaacagtcc tagtaccagc
    15721 ccaacggccg cgcccacacc aattccttgc caaggttttt cgtggacgta gtcatcagca
    15781 cgataaacag cctgcttcgc ccgatagtaa taactgtctg aaacctggct aacccgtttt
    15841 ttcacatcat ccagcgcttt ttctgcacgc gctttcagct caacatattt ctgatcagcg
    15901 ggatcgccag aggagcggag cacctcttcc agtgtctcac taagcagcgt caggtcgtca
    15961 tcgatacgtg tatcaccaaa ctgattagac attctcgttc tccatttgcg taaaacctgt
    16021 cactaactat agacaagggt tgttgattac gcctgaatta cctcgcgtgc catcccaatg
    16081 tgtgggatac catcttcttc atagacctcc gtcacaggga taaaaccgaa actctggtag
    16141 aagttttgca gatgcgcctg cgccccgagg taaacaggct tatcaggcca gtgatgcgtg
    16201 caggtgtcga gggttttact catcagttgc tgccccactt tttcgccacg caacgcttca
    16261 ctgacaatca cccgaccaat aacgaccggc tcaagatcat catcactttt cagaatcctc
    16321 gcatatgcca ccagttcatc atttttccaa ccgagaatat ggcgattatc ccccgtcaaa
    16381 tcatcaccat cgatatcctg ataagggcaa ttctgctcga caacaaacac cgcgcaacgc
    16441 agttgtaata aggcataaag ctgggaaacc gataattcag agtgatgcag atcttgccat
    16501 tcaatcataa tgctctcctt ttagatgtat accttatact agccggaata ttttttgaaa
    16561 cgtgatgaac tcatggaatt aattttttta ggtacttcag ccggtgtgcc aacccgcacg
    16621 cgcaatgtca cggcaatatt gcttaacctg caacatccga cccagagcgg actttggttg
    16681 tttgactgcg gtgaaggcac ccagcatcag ctactgcata ccgcctttaa ccctggaaaa
    16741 ctggacaaga tttttatcag tcaccttcat ggcgatcatc tttttggttt acccggcttg
    16801 ctgtgcagtc gttctatgtc aggcattatc caacccttaa cgatttatgg tccgcaaggt
    16861 atccgtgaat ttgtggaaac cgcgctgcgg attagcggct catggaccga ttatccgctg
    16921 gaaattgtcg aaattggcgc tggcgaaatt ctcgatgatg gcctgcgcaa agtaaccgct
    16981 tatccgctgg aacacccact ggaatgttat ggctatcgta ttgaagaaca tgataaaccg
    17041 ggtgcattaa atgcccaggc attaaaagct gctggcgtgc cgcctggccc actgtttcag
    17101 gaattaaaag cgggcaaaac aatcacgctg gaagatggaa ggcagattaa cggcgcagat
    17161 tacttagctg ctccagtgcc aggtaaagcg ctcgctattt tcggcgatac cggcccctgc
    17221 gatgccgcac ttgacctggc taaaggtgtc gatgtcatgg tgcacgaagc gacgctggat
    17281 ataaccatgg aagccaaagc caatagtcgc ggccatagct ctacacgcca ggctgcgaca
    17341 ctagcccgtg aggctggagt cggtaagcta atcattaccc acgtcagctc gcgctatgat
    17401 gacaaaggtt gtcagcacct gttacgtgaa tgcaggtcaa ttttcccggc gactgaacta
    17461 gcgaatgatt tcaccgtgtt taacgtttaa ctctg
//
LOCUS       DAJVUP010000083        17493 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.083, whole genome shotgun sequence.
ACCESSION   DAJVUP010000083 DAJVUP010000000
VERSION     DAJVUP010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17493
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.083"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..744
                     /locus_tag="OQQ75_002492"
     CDS             <1..744
                     /locus_tag="OQQ75_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS1976781.1"
                     /translation="SSTDKPAKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLSD
                     WQAFNKLATKCNAYDGVTMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLL
                     QDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYI
                     DQLHTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSNSAAIYSGLGFERVPQDRD
                     IRSDRMHLTPANHPDLWTQENGEWIYLRN"
     gene            complement(815..1264)
                     /gene="rplI"
                     /locus_tag="OQQ75_002493"
     CDS             complement(815..1264)
                     /gene="rplI"
                     /locus_tag="OQQ75_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HCS1976782.1"
                     /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNI
                     EFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA
                     VTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE"
     gene            complement(1306..1533)
                     /gene="rpsR"
                     /locus_tag="OQQ75_002494"
     CDS             complement(1306..1533)
                     /gene="rpsR"
                     /locus_tag="OQQ75_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HCS1976783.1"
                     /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ"
     gene            complement(1538..1852)
                     /gene="priB"
                     /locus_tag="OQQ75_002495"
     CDS             complement(1538..1852)
                     /gene="priB"
                     /locus_tag="OQQ75_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HCS1976784.1"
                     /translation="MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHHSVQEEAGFHR
                     QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS
                     GD"
     gene            complement(1859..2254)
                     /gene="rpsF"
                     /locus_tag="OQQ75_002496"
     CDS             complement(1859..2254)
                     /gene="rpsF"
                     /locus_tag="OQQ75_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HCS1976785.1"
                     /translation="MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM
                     VKAKDERRERRDDFANETADDAEAGDSEE"
     gene            2581..2856
                     /locus_tag="OQQ75_002497"
     CDS             2581..2856
                     /locus_tag="OQQ75_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1976786.1"
                     /translation="MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYIN
                     HNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR"
     gene            complement(2931..3482)
                     /locus_tag="OQQ75_002498"
     CDS             complement(2931..3482)
                     /locus_tag="OQQ75_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HCS1976787.1"
                     /translation="MAINGLFVRTDPQRRRYGVALLVGVLSGIISAFVKWGAEVPLPP
                     RTFSGGRDEFNPPYIFLRDYLGIDPTQTVYTFSEHIINPVMVTHIIFSLVFAIGYCIV
                     AEIFPKVKLWQGILAGLIVTVAVHGIFCPALNLTPPLTQLPFDEYASEILGHIFWFWI
                     IEIMRRDLRNRITHEPDPEVAIR"
     gene            complement(3579..4265)
                     /gene="ulaF"
                     /locus_tag="OQQ75_002499"
     CDS             complement(3579..4265)
                     /gene="ulaF"
                     /locus_tag="OQQ75_002499"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase UlaF"
                     /protein_id="HCS1976788.1"
                     /translation="MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG
                     VAYETMKADDMVVVDMSGKVVEGKYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAW
                     AQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGKVIIETLGDAEPLHTP
                     GIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRK
                     HGPNAYYGQK"
     gene            complement(4265..5119)
                     /gene="ulaE"
                     /locus_tag="OQQ75_002500"
     CDS             complement(4265..5119)
                     /gene="ulaE"
                     /locus_tag="OQQ75_002500"
                     /EC_number="5.1.3.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase UlaE"
                     /protein_id="HCS1976789.1"
                     /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD
                     ERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA
                     IQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYP
                     LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG
                     VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAEDPAAEVVKARDWVKARMA
                     KAGMVEAA"
     gene            complement(5129..5779)
                     /gene="ulaD"
                     /locus_tag="OQQ75_002501"
     CDS             complement(5129..5779)
                     /gene="ulaD"
                     /locus_tag="OQQ75_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HCS1976790.1"
                     /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV
                     RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA
                     KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLS
                     DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG"
     gene            complement(5793..6257)
                     /gene="ulaC"
                     /locus_tag="OQQ75_002502"
     CDS             complement(5793..6257)
                     /gene="ulaC"
                     /locus_tag="OQQ75_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIA"
                     /protein_id="HCS1976791.1"
                     /translation="MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYY
                     QAILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDIL
                     ITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA"
     gene            complement(6267..6572)
                     /gene="ulaB"
                     /locus_tag="OQQ75_002503"
     CDS             complement(6267..6572)
                     /gene="ulaB"
                     /locus_tag="OQQ75_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIB"
                     /protein_id="HCS1976792.1"
                     /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY
                     KSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK"
     gene            complement(6588..8036)
                     /gene="ulaA"
                     /locus_tag="OQQ75_002504"
     CDS             complement(6588..8036)
                     /gene="ulaA"
                     /locus_tag="OQQ75_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008786013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HCS1976793.1"
                     /translation="MSAQHSGCAEYPVTSSSGDRLYNIFTVFFNQVMTNAPLLLGIVT
                     CLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISD
                     TYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGL
                     IAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASW
                     IAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAM
                     AGKVNWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAA
                     IYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFG
                     GWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAFMA
                     VIIVIALAYMFFAGRALRAEEDAEKQLAEQSA"
     gene            8340..9404
                     /gene="ulaG"
                     /locus_tag="OQQ75_002505"
     CDS             8340..9404
                     /gene="ulaG"
                     /locus_tag="OQQ75_002505"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HCS1976794.1"
                     /translation="MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG
                     CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTPPFVL
                     DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKER
                     CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPG
                     GSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKV
                     VIPFHHDIWSNFQAAPQEIRVQWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHY
                     PRGFDDCFTIEPDLPFKSFL"
     gene            9512..10267
                     /gene="ulaR"
                     /locus_tag="OQQ75_002506"
     CDS             9512..10267
                     /gene="ulaR"
                     /locus_tag="OQQ75_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HCS1976795.1"
                     /translation="MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLD
                     ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG
                     STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
                     SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLF
                     SRADQIDMLITGKNANPEILQQLEAQGVSILRV"
     gene            complement(10264..11013)
                     /gene="yjfP"
                     /locus_tag="OQQ75_002507"
     CDS             complement(10264..11013)
                     /gene="yjfP"
                     /locus_tag="OQQ75_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1976796.1"
                     /translation="MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYS
                     YFAVALAQAGLRVIMPDAPDHGSRFSSDEARRLNQFWQILLQSMQEFTTLRAAIAEEN
                     WLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAA
                     QQNEFNNIIAPLAEWEATNHLEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRD
                     KLLTCSWQPGVRHRITPEALDAAVTFFRQHL"
     gene            11195..11524
                     /gene="bsmA"
                     /locus_tag="OQQ75_002508"
     CDS             11195..11524
                     /gene="bsmA"
                     /locus_tag="OQQ75_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313192.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm peroxide resistance protein BsmA"
                     /protein_id="HCS1976797.1"
                     /translation="MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTNHPQE
                     IRRDQTQGLQRIGSVSTMVRGSPDDALAEIRAKAVAAKADYYVVVMVDETIVTGQWYS
                     QAILYRK"
     gene            11673..11948
                     /gene="yjfN"
                     /locus_tag="OQQ75_002509"
     CDS             11673..11948
                     /gene="yjfN"
                     /locus_tag="OQQ75_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease activator YjfN"
                     /protein_id="HCS1976798.1"
                     /translation="MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVS
                     NISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA"
     gene            complement(12065..13690)
                     /locus_tag="OQQ75_002510"
     CDS             complement(12065..13690)
                     /locus_tag="OQQ75_002510"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418608.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HCS1976799.1"
                     /translation="MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLA
                     SIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHN
                     LAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPTPFQDWTTPL
                     LSDRYDSLLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS
                     VPQSDAHLVLAQTTGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA
                     IGWLLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ
                     PLMCHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPF
                     VAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLS
                     EAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQ
                     AWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV"
     gene            complement(13774..14832)
                     /locus_tag="OQQ75_002511"
     CDS             complement(13774..14832)
                     /locus_tag="OQQ75_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1976800.1"
                     /translation="MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQ
                     IEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRM
                     DFAWCGNAPVKLLEYNAIQERLISRFSELYSREPFYFCCCQDTDEDRSTVLYLQDCAQ
                     QAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQW
                     VEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKPQIAAGESYVRKPIYSREGGN
                     VTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIRED
                     NTLITKDTSRFVPHYIAG"
     gene            complement(14835..15473)
                     /locus_tag="OQQ75_002512"
     CDS             complement(14835..15473)
                     /locus_tag="OQQ75_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 domain-containing protein"
                     /protein_id="HCS1976801.1"
                     /translation="MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLAL
                     MGGAAFFVLKGCGDSGDVDNDGDGTFYSTVQDCIDDGNNADICARGWNNAKAAFYADV
                     PKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASR
                     PVWLNTSGDYSWRSGSGKKESYSSGGFTTKKASTVSRGGYGRSSSARGHWGG"
     gene            complement(15483..15881)
                     /locus_tag="OQQ75_002513"
     CDS             complement(15483..15881)
                     /locus_tag="OQQ75_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HCS1976802.1"
                     /translation="MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNN
                     TAVSLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSE
                     KIINHNTAAGMFMGTAALAGGIFNAACMTW"
     gene            complement(15899..16558)
                     /locus_tag="OQQ75_002514"
     CDS             complement(15899..16558)
                     /locus_tag="OQQ75_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfK family protein"
                     /protein_id="HCS1976803.1"
                     /translation="MSGFFQRLFGKDNKPAIARGPLGLHLNSGFTLDTLAFRLLEDEL
                     LIALPGEEFTVAAVSRIDLGGGSQIFRYYTSGDEFLQINTTGGEDIDDIDDIKLFVYE
                     ESYGISKESHWREAINAKTMGAMTLNWQEKRWQRFFNSEEPGNIEPVYMLEKVENQNH
                     AKWEVHNFTMGYQRQVTEDTYEYLLLNGEESFNDLGEPEWLFSRALGVDIPLTSLHII
                     G"
     gene            complement(16609..17307)
                     /locus_tag="OQQ75_002515"
     CDS             complement(16609..17307)
                     /locus_tag="OQQ75_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HCS1976804.1"
                     /translation="MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDK
                     AGKSRVDLLARVKLSHDKLKDLRERKASLEARALEALSKNVNPSLINEVAEEIARLEN
                     LITAEEQVLSNLEVSRDGVEKAVTATAQRIAQFEQQMEVVKATEAMQRAQQAVTTSTV
                     GASSSVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGRDLDEKLAEAGIGGSNKSR
                     AQDVLARLQRQQGE"
     gene            complement(17380..>17493)
                     /locus_tag="OQQ75_002516"
     CDS             complement(17380..>17493)
                     /locus_tag="OQQ75_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HCS1976805.1"
                     /translation="MPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEIT"
BASE COUNT         4463 a         4673 c         4187 g         4170 t
ORIGIN      
        1 tcgtccaccg acaaaccagc aaaattaaaa tttcatcaat acgcacgcgc tacattactg
       61 tcaaatcgtg gaagagatca taattgcgat ggcagacgta ctgttgagat ccacaaacta
      121 gatctctctg actggcaagc attcaataag ttagcaacga agtgtaatgc ttacgatgga
      181 gtaacaatga atggtgataa ttcttttgga tggaaccatg aagctacatt agataatatt
      241 cacgcccaga aatacaataa agcttacgcg ggtgcgaggt taaccgcaga actgaaatat
      301 ttattgcaag atgtcgaatc cttcgaaccc aacagtaaat acacaataca cgaagtggtt
      361 ttgggacctg gttatggtac tccagactat accggccaaa cgataggata cgttgtaacc
      421 cttcctgccc aaatgcctaa ttgctggtca tctgaactac caacaatcga tctttatatc
      481 gaccaacttc acactgttac aggcgtttct aatgccctcg gattcatcat tgctgcattg
      541 ctaaacgcgt attctgattt accccatgat ttgaaaattg gtctgcgttc cttatcaaat
      601 tcagcagcaa tctactcggg tttaggtttc gagcgagtgc cgcaggaccg agacataagg
      661 agtgatcgta tgcatctaac gccagcaaac catcctgact tatggacaca agagaatggt
      721 gaatggatct acttgcgaaa ctaatacctg acgaaaaata gaaagcaaaa cgccgaccaa
      781 tggtcggcgt ttttacgtct cgttgaataa cgaattattc agctactacg tttacgatca
      841 ctttcgcgaa tacttcgctg tgaacctgga agctcacttc gtgttcgcca gtggtacgca
      901 gaacgccgtt cggcagacga acttcgctct tagccacttc aacgccagct gcagttacag
      961 cgtcagcgat gtcgcgagta ccgatggaac cgaacagttt accttcgtcg ccagctttag
     1021 acgcgatggt aacagtttcc agtgcattga ttttctcagc gcgagcatta gcagctgcca
     1081 gaacttcagc cagtttagct tccagttcag cgcgacgtgc ttcgaagaat tcaatgtttt
     1141 tcttggtagc tggaacagct ttaccctgcg gtaccaggaa gttacgagca tagcccgctt
     1201 taacgtttac ctgatcacct aggctaccca ggtttgctac tttatcaagc agaataactt
     1261 gcattacctt atcctctcaa agtcgtatta atggaccgtg accgattact gatggcgatc
     1321 agtgtacggc agcagggaca ggtagcgagc gcgtttgata gcgcgagcca gctgacgctg
     1381 gtattttgca cgggtaccgg tgatacggct tgggacaatc ttaccgcttt cggtgatgta
     1441 gtttttcagc gtagcgatat ctttatagtc gatctcttga acgccttccg cggtgaaacg
     1501 gcagaacttg cgacgacgga aataacgtgc catatggcta gtctccagaa tctatcaatt
     1561 caatctgctc ggcatgcaaa accattttgc tcagtccgtt ctttgccttg tggcatgaaa
     1621 tgaacccctg aacggttatg cgactgccga ccgttatact gtgagtaatg gcttggtttt
     1681 cgtgtccgct aacaataacg ggcatttggc accacgcctg ccggtgaaaa ccggcttcct
     1741 cctgcacaga atgatgctca agcacgaact ggcagtgagg aattcctgat ggactgacct
     1801 ttcgaagggg agtcctgcac acggtgccgg acaacaccag acggttggtc atcagaaatt
     1861 actcttcaga atccccagct tcagcatcat cagcggtttc gtttgcgaaa tcatcgcgac
     1921 gctcacggcg ctcgtctttc gctttaacca tcggagatgc ttcggtaaca gcgtgcttgg
     1981 tacgcataac catgctgcgg ataacggcat cgttgaagcg gaaggtagtt tccagctcat
     2041 cgatcacttc ctgcggagct tcaacgttca tcagaacgta gtgtgctttg tgcagtttgt
     2101 tgatcgggta agccagctga cggcggcccc agtcttccag acggtggatc ttgccttctg
     2161 caccagtgat ggcagcagtg tagcgctcga tcatgcccgg aacctgttcg ctctggtcag
     2221 gatggaccat aaaaacgatt tcgtaatgac gcatcgaatt gctccttacg gattattcag
     2281 cctcctgtct gggtcagccg aatcccgggg aggcaaggaa cgtgttaaag gtcggctgaa
     2341 aaatgacgcg ttatagtact tgtatgcccc actaaactca aggccagccg acaaataaat
     2401 ctcatctttc gctcaaaaga actaactcgc tgatttgaag ttcatcacat tccgtcacag
     2461 tgttttttcg aacaactgca tcagaaatgg tcaccatcaa cttctttatc attgattaaa
     2521 attaaatcag aagatcatca cagaggagag cacacaaagt cagccgtcga ggaggtatct
     2581 atgttcagtc gtgttttagc ccttctggct gtgcttttgc taagtgcaaa tacatgggca
     2641 gccattgaaa ttaataacca ccaggccaga aatatggacg acgtacagag cttaggcgtg
     2701 atttatatca atcataattt cgccactgaa agcgaagcac gtcaggcatt aaatgaagag
     2761 acagatgcgc agggcgcaac gtactaccac gtaattctga tgcgggaacc ggggagtaac
     2821 ggcaatatgc acgccagcgc ggatatttat cgctagcacc aggtataacc aacgaaacat
     2881 tgccatagtt tgctttgccc ccttcgcagg gggctttttt atacggttat tcaccggatt
     2941 gcgacttccg gatctggctc atgagtaatg cgattacgta agtcgcggcg cataatttct
     3001 attatccaga accagaaaat atgccccagg atttcagagg catattcgtc aaaaggcaat
     3061 tgagtgagcg gcggcgttaa attcagcgcc gggcaaaata taccgtggac tgccactgtc
     3121 acaataagcc ctgctaatat cccctgccat aatttcactt tcgggaaaat ttccgcgaca
     3181 atacaatacc ctatcgcaaa aaccagtgag aagatgatat gcgtcaccat caccgggttg
     3241 ataatatgtt ccgagaatgt atacacagtt tgggttgggt cgatacctaa ataatcccgt
     3301 agaaagatat acggcgggtt aaattcatcg cgaccaccgg aaaatgtgcg cggtggcaag
     3361 gggacttccg ctccccattt aacaaatgct gaaataattc ctgaaagtac acccacaagt
     3421 aacgcaacgc catagcggcg acgttgcgga tccgttctga caaacaatcc attgatagcc
     3481 ataaaaacac ctgttgttta tacgattttt taactgaagc ggccccggaa tcagaccaat
     3541 tacatcccgc aggaggtaat aattccgggg cgcactgctt acttctgccc gtaataggcg
     3601 ttaggaccgt gcttacgcat gaagtgttta ttcatgagga agctgtcgat gtgattcagt
     3661 tgtgggttaa tactgcgcgc aatccacgcc attttcgcca cttcttccat caccaccgcg
     3721 ttatgcaccg cgtcgtgggc atctttcccc caggcgaacg gcccgtgctg atacaccaca
     3781 attcccggcg tatgcagcgg ctcggcgtca cccagcgttt cgataatcac tttgccggtg
     3841 ttcagttcat actcgccctg cacctcttct tcgcttaatc cacgcgtaca cgggatgtcg
     3901 ccaaagaagt agtcggcgtg cgtggtgcct aacgccggga tcgccagccc cgcctgcgcc
     3961 catgcggtgg catgagtgga atgggtatgg acaatgccgc cgagcgacgg gtaacgacgg
     4021 tagagttcaa gatgcgtcgc ggtgtcagaa gacgggcgat acttcccttc taccaccttg
     4081 ccgctcatat cgaccaccac catatcgtct gctttcatgg tttcgtaggc aacgccgctg
     4141 ggcttgatca ccaccagccc gcgttcgcgg tcgatagcgc tgacgttgcc ccaggtaaag
     4201 gtcaccagcc catagcgcgg cagatccatg ttggcttcaa acacctgctg ttttagcttt
     4261 tgcattatgc cgcctccacc atgcctgctt tggccatgcg cgctttcacc caatcacgcg
     4321 ctttcaccac ttctgccgcc gggtcttccg ccgtttcgct ccacatctca atcaggtacg
     4381 gcccgcaata gccactctgt ttgagcgttt cgaagcaacg ttcgaaatcc accacacctt
     4441 cgccaaatgg cacgtttttg aagacgcccg gtttggtgtc tttcacatgc accgcgacga
     4501 tatgcccgat tccggcctgc aactccatct gcacatcgtt gtcccacgcc gacaggttgc
     4561 cgatatctgg gtagagctgg aaccacgggt tgttgagata gtgcgcgtaa cccagcgcct
     4621 tgctgatgga gttcatcaac ggataatcca tgatctccat cgccagcgtc acctgcgcgc
     4681 ggctcgccat ctcaacgctc tctttcaggc cgtcacggaa acgacgacgc gtttcgttat
     4741 tggcttcctg atagtaaacg tcatagcccg ccagctggat cacgcgaatg ccaacgtcct
     4801 gggcgaactg gatggcttta cgcataatct ccagcccctg cgcccgcacc gcgtcatctt
     4861 cgctgcccaa cgggaaacga cgatgggcag aaaggcacat ggacggcaca cgcacgccgg
     4921 tttcaacaat cgcattcacc agcgccagac gctgctcgcg gctccagtcg aggcgcgaca
     4981 ggcgctcgtc agtttcatct accgacatct cgacaaaatc gaagcccaac gtttttgcca
     5041 gtcgcaggcg ttccagccag cactccccgg cggggagcgc tttttcatag atgccaagcg
     5101 ggatttgttt ggacaacata tccgctcctt agccccacag ttcggcgatg gaacgtttga
     5161 actgacgcgc ggcttcaacc ggagaagcgg catcacggat gctgcgaccg gcgataaaca
     5221 catgaattgg aatgcctttg aacagcggca gatcttccag cgccaggcca ccggtgacgg
     5281 tgactttgaa gcccatatcg gaaagacgtt tgatcgcagt gatatcggct tcaccccacg
     5341 ccacgccagc ggcctgcgcg tcacggctgc ggtgataaac cacctgctga atacctgcgt
     5401 cgcgccactg ttgcgcctgt tcccaggtcc agtaaccggt cagttcgatc tgcacgtcgc
     5461 cgttaaactc ttttgctacg tccagcgcac ctttggcggt gttgatatcc gcacaacaaa
     5521 tcacggtcac ccagtcagcg ttggcttcga agcacatacg agaaagaatt ttgcccgcat
     5581 cggcaatttt ggcgtctgcc agcacgattt tgtgcgggta gagcgctttc agatcgcgaa
     5641 ccgcacgcac gccttcgccc acgcacagaa tggtacccac ttcgataatg tcgacttctt
     5701 cggcaatcag gcgagtggtt tcgtaggcgc tatccatagt ctggttgtcc agcgcgactt
     5761 gcaacatcgg taatgacatc ttcaattcct tcttaagctg ccgcgttggt gcggtcaatg
     5821 agatccagta cttcctgctc ggtacggcag gcacgtaaac ggtcgaaatt ttcttcatct
     5881 tcaaacaggt tgacgatctg catgatgccc acttcctggt gcgtgttggc atcgaccgcc
     5941 gccatggtga tgaggatatc caccgggtcg ttatcttcgt ggttgaactc cagcggcttt
     6001 ttcagcgtca ccagcgcaaa accggttttc ttaacgccct cttccgggcg accgtgcggc
     6061 attgccaggc ctggtgcgag cacaaagtac ggaccgtgct gttcaaccgc atccagaatc
     6121 gcctggtagt aacgcggctc gacaacatcc gccgccacca gcaggtcaac gccgattttt
     6181 actgcgtcct gccatgtctc agcttcagcc tgcaggcgga tggatttatt ctccgccagc
     6241 gaatcacgta atttcatggc gcgtccttac ttcacatcct gcgggaaatg cgctttgatc
     6301 acttccagca gtttcgggcc aaagtcggca ggagagagca tgttgcgcac gccaaccacg
     6361 tatttgttgc cggtcacggt gatttcgccc gcaatgtgcg tagaagcgat gatgatatcc
     6421 gcgccgctca actcgctttt gtattcgcca accgcgcagc tatttaccgt gtggtcaatg
     6481 tttgattggg ttaaaaactg gtccactttc atcttcatga tcatggaact gccttgtccg
     6541 ttgccacaca cagccagaat acgtacggtc ataatcaaaa ctccttatta agcagactgt
     6601 tctgccagtt gtttttctgc atcttcttct gcgcgcagtg cgcggccagc gaagaacata
     6661 taagccagtg caattacaat gatgacggcc ataaaggcga taccgatgga gaagaagccc
     6721 tgcatcatcg gcggtgccag aatcgaccag tccgccatgc ccatccaggc gctcataccg
     6781 gtgagtttca ccgcccagac gcagccaaag atttcaatca tccccatcac cagacatatc
     6841 ttcagcgccg cacgccagcc gccgaagtgg ttagcgaaca cgccgatggt ggcgttggag
     6901 aagaacatcg ggataaagcc gggaataatc aggatcgagg aaccgcaggc gaccaggatg
     6961 ccaaccgcaa tcagctgacc gatggtgccc cacataaagc cccaaaccac ggcgttcggc
     7021 gcgaagctat agatagccgc acagtcaatc gccagaaccg caccagggat caggcgctgg
     7081 gagataccgt taaatgcttc agagagttcc gccacaaaca tgcgcacgcc ctgagtgatg
     7141 atgaagatcg ccaccgcgaa ggagaaacca gtttgcagga tgtacaccgt ccagttcact
     7201 ttgcctgcca tcgcctgcac ggtgtcgata ccgaaggaga gtagaatggc accaaagaag
     7261 atggtcatca caatcgccgt ggagacgatg ttgtcgtgga aaatattcag ccagcctggc
     7321 agtttgaggt cttcaacgct ttcctctttt ttgccgagga acggcgcaac tttataggca
     7381 atccatgatg caaactgttg ctggtgaccg atggagaaac cgcagccgtc cgtcacttcc
     7441 tgagtcggct tgtacatcat attggaggta atgccccagt agagcgaaac cagaatcgcc
     7501 gtgcagataa tggttgtcca catggagtag ccgaaaataa acaacgtaac ggcaatcagc
     7561 cccgcctgct ggaacatgat atgaccagtc agcatgatgg tacgaatacc ggtaatgcga
     7621 cgcagcagca cgtaacagat gttcagcgcc agcgctaaca acaccgcgta acctacccag
     7681 ctataggcat cgcccatgcg gtcgatggtt gccatcatcg acgcgtaagt atcggaaatt
     7741 gcgccgttaa tgccgtagac ttcggacatt ttcgccacca ccggtttgaa ggtgctggtg
     7801 aggatgccgg accctgcctg caacaacatg aaaccaatta tggttttaat cgtgccttta
     7861 ataataacgc tgacactttt gcgcagtagg atgtagccca gacaggtcac aatacccagc
     7921 aacaacgggg cattggtcat gacctggtta aaaaacacgg taaagatgtt gtagagacga
     7981 tctcctgaag aagaggtaac cgggtattcc gcacacccgg aatgttgtgc actcactcta
     8041 attttcaaaa gcaatcacaa caagattatt tatgattaaa tgtgacgcga cccgcaaata
     8101 attccatacg gatagagtgg gattcacaca acgaaacaat tatttattta aatttagtta
     8161 aattcattta gttaatttaa ctatacattc cattaaatct ttccacactc aaaatcaaca
     8221 acaacttccc tggcaaaaag tcaaaaaatg gtcattgcct tcctgaaaaa atagtgtcag
     8281 gattaatcaa aaccaatcac atattgattc gaattgaact atcatgaagg taaatggcga
     8341 tgagtaaagt gaaaagtatc acccgagaat cctggatcct gagcactttc ccggagtggg
     8401 gtagctggct gaatgaagaa attgaacaag agcaggtcgc ccctggcaca tttgcgatgt
     8461 ggtggctagg ctgcaccggg atctggttga aatcagaagg tggcaccaac gtttgcgttg
     8521 atttctggtg cggcactggc aaacaaagtc acggtaaccc gttaatgaaa cagggtcacc
     8581 agatgcagcg catggctggc gtgaaaaaac tgcagccaaa cctacgcacc cccccgtttg
     8641 ttcttgatcc gtttgcgatt cgccagatcg acgcggtact ggcgactcac gatcacaacg
     8701 atcatatcga cgttaacgtc gctgctgccg tgatgcagaa ctgtgctgat gacgtaccat
     8761 tcattggacc gaaaacctgc gttgatttgt ggattggctg gggcgtaccg aaagagcgtt
     8821 gcatcgtggt caaaccgggc gatgtggtga aagtgaaaga cattgaaatt catgcgcttg
     8881 atgctttcga ccgtactgca ctgatcaccc tgcctgccga tcaaaaagcg gctggcgtac
     8941 tgccggacgg catggacgat cgcgcggtga actatctgtt caaaacgcct ggcggctccc
     9001 tgtatcacag cggcgactcc cactactcta actattatgc gaagcacggt aacgaacatc
     9061 agatcgacgt ggctttaggt tcatacggcg aaaacccgcg cggtatcacc gacaaaatga
     9121 ccagcgccga tatgctgcgt atgggtgaag ccctgaatgc gaaagtggtt atcccgttcc
     9181 accacgatat ctggtcaaac ttccaggccg ctccgcaaga gatccgcgtg cagtgggaga
     9241 tgaaaaaaga tcgtctgaag tatggcttca agccgtttat ctggcaggtt ggcggcaaat
     9301 ttacctggcc actggataaa gacaacttcg agtaccacta tccgcgcggt ttcgatgatt
     9361 gcttcactat tgaaccggat ctgccgttca aatcattcct gtaatctgtc gtttataccg
     9421 gatagcgtgg agaagttcgc gctatccggc gtagtatttc ctggctattt caaatatcat
     9481 ctaaaaaaat caaattttat cggaatagct catgactgaa gcacaaagac atcaaatcct
     9541 cctggaaatg ctcgcacaat tgggctttgt gaccgttgag aaagtcgttg agcgtctggg
     9601 aatttcgcct gccactgcgc gacgcgatat caataaactt gacgaaagcg gcaaactcaa
     9661 aaaggtgcgc aatggcgcag aagctattac ccaacagcgc ccgcgctgga cgccgatgaa
     9721 tctgcatcag gcgcagaatc acgatgaaaa agtacgtatt gctaaagcgg cctcgcagct
     9781 ggttaatccg ggcgaaagcg tagtcatcaa ctgcggctcc accgcgtttc tgcttgggcg
     9841 ggaaatgtgt ggcaagccag tgcaaatcat cactaattat ctaccgctgg caaattacct
     9901 gatcgatcaa gaacatgaca gcgtgatcat tatgggtgga cagtacaaca aaagtcagtc
     9961 catcacttta agcccgcagg gcagcgaaaa cagtctctat gccgggcact ggatgtttac
    10021 cagcggaaaa gggctgaccg cagaagggtt gtataaaacc gatatgctga cagcaatggc
    10081 agagcagaag atgctgagcg tggtagggaa actggtggta ctggttgata gcagtaagat
    10141 tggcgaacgc gcgggaatgc tttttagccg tgccgatcaa atcgatatgc ttatcaccgg
    10201 caaaaatgct aacccggaaa tcctgcaaca actggaagcg caaggggtca gcattctgcg
    10261 tgtttaaaga tgctggcgga aaaatgtcac ggcagcatct aacgcctcag gcgtaatgcg
    10321 gtgacgcacg cctggctgcc atgaacaggt tagcagttta tcccgtcccg tctcgcttaa
    10381 ggcctgctgc aaacgtagtg attcgtcggc aggcacaacg tcatcgtcga ggccatgcca
    10441 cagcagtaga ggtctgtccc caagttgttc caggtggttt gtcgcttccc actctgccag
    10501 cggcgcgata atgttattga attcattctg ctgtgctgcc gtttcaggta tcagcggtgg
    10561 aaacagtgaa cgggcgagcg atgtaaaata gcccgatccc atcatgctgg cggtacattt
    10621 caccgtgggg tggcgagcgg taattcccag tgccgtcatc gcgcccatcg acgcgccacc
    10681 gactgccaga cggtcatcaa gcagccagtt ttcttcggct attgccgcac gtaaagtagt
    10741 gaattcctgc atactttgta gcaagatttg ccagaattga tttaaccgcc gcgcttcgtc
    10801 gctactaaaa cggctaccgt gatcgggcgc atccggcatg atcacccgca aaccagcctg
    10861 cgccagcgca acggcaaaat agctatacac caggctggat gaagtaaagc cgtgataaaa
    10921 aattacgcac ggtaacgggg tatctttttg cccgacagga taagcatgaa gaacgggaat
    10981 atctgccagc tcgcgtgatt ctatttcaat catctgtctc tcctttttgt ctggtatgac
    11041 atgaagaaat ccttagcaca agtttctgct ggcggtatta gttcataatg ttgagatgtg
    11101 ggttacgctt tcgtcacgtt ttcattcgaa aatcgcgtac caggtaacaa ttcgggaaca
    11161 ttcccccaaa gttaaattaa taaggcacta cactatggtt agcaggaaac gtaatagcgt
    11221 tatttaccgg tttgccagtt tattattggt gttgatgtta agtgcctgta gcgcactgca
    11281 aggtacgcca cagccagcac cgccagtaac gaaccatccg caagagattc gccgcgacca
    11341 gacgcaaggg ttacagcgaa taggtagcgt aagcacgatg gttcggggtt ctccggatga
    11401 cgcattagca gaaatcagag caaaagctgt cgctgcaaaa gctgattatt acgttgtcgt
    11461 catggtggac gaaaccatcg tgacaggaca gtggtattca caagccattt tgtaccgtaa
    11521 ataaatcaga caacttacat agtcagcttt acattgcttt gcgtccctat gcgtttacct
    11581 gtgcacaata aattaccggc tggaagcctg ggcgtttatt accgcgatgg aatgccctgc
    11641 aacatgtggg gaaacgaaaa atggagctga cgatgaaaca attacttgct tcaccctcgc
    11701 tgcaattagt gacttatcct gcgagcgcca cggcacagtc tgcagaattc gccagtgctg
    11761 actgcgtgac gggcctgaat gaaataggtc agatctcagt tagcaatatt tcaggggatc
    11821 cgcaggacgt ggaacgtatc gtggcgttaa aggccgatga acaaggtgcg tcatggtacc
    11881 gcattattac catgtacgaa gaccagcagc ctgataactg gcgcgtacag gcgatactgt
    11941 atgcatgagt gtcatctaca gcaaatgaac aatgccggat tcggcgcgag cgccttgtcc
    12001 ggcctacaat tttcacatat ttcattgagt taatcgaaac cagcgtcgca tcagtcgtat
    12061 acgcttacac acacactccc cccgtcgccc gcagcaataa atcattctgg atctgctctg
    12121 acaaccgtac gccgccgcgc gtatctaaca tcacctgaca ccacgcctgc gccattggcg
    12181 gagaagcata tttcaacatt tgcgcaccgc agcccagcag gaatagctga tgagtaatct
    12241 ctcgccccag ttcttcagct ggcttacgca gctgctgctg taaacgacga accgcgcgat
    12301 caaaatagcg atcctgccct ttcacttcca caaatgcttc cgacaataag tcgtatacgc
    12361 ccgcttgctt attgagaacg cgcaacacat ccaggcacat aatattgccg gaaccttccc
    12421 aaatactgtt taccggcatc tcccggtaaa gccgcggcag ctcgctctcc tcgcaataac
    12481 caatgccgcc cagcacctcc atcgcttcgg ccacaaacgg catacctctt ttgcagatca
    12541 caaattttgc cgcaggcgta aataaacgcg cccacagggc ttctttggca tcggcacgcc
    12601 ggtcccacgc tcgcgcaaga cgaaacagca acgccgtttg cccttcaagc tgaagtgcca
    12661 tgcgacttaa gacatgacac ataaggggct gttggatcaa tggattacca aaaacatggc
    12721 gttgatgtgc atgataaatc gccagcgaaa atgcacggcg catcatggca tggctaccca
    12781 gggcgcaatc aaaacgcgtc atcccaccca ttttcaggat cagacgaatt ccttcccctt
    12841 cctgccccaa caaccagcca atggcatcct gaaactccac ttcgcaactg gcgttagagc
    12901 gattacccag cttatctttc agccgctcga ggcgaatcgc gttgcgttgc ccatcaggca
    12961 aaaagcgcgg cacaaaaaag caggacaaac cgcccgtagt ctgcgccagc accagatgcg
    13021 catcgctttg cggcaccgag aaaaaccatt tatgccccac cagccgataa gagccatctt
    13081 ccagacgctc tgcacgggtg gtgttgctca tgacatcgga accgccctgc ttttccgtca
    13141 ttcccatgcc aatcaacaaa ccgcgttttt gcccacctgg caataagaga gaatcgtagc
    13201 gatcgctcag cagcggcgtg gtccagtcct gaaacggcgt gggtaacatc tgtaacaaca
    13261 atggcgtggc ggcaaaggtc atcgttattg gacataacga cccagcctca acctgcgcat
    13321 gtaacataaa acgcgccgcg cgcgccacaa atgcgccgga gcgagcgtct tcttcccagg
    13381 caagattgtg cacccgattg gtacataacg cctgcatcag caggtgccag gcggggtgaa
    13441 aacgcacatc gtccagacgg cgtccttgcg catcgtagcg caataattca ggcggattca
    13501 cattcgccag ccgccccagt tcaagagatt cagccgttcc taactgctga ccaatactgg
    13561 ctagaaaatc gctatcccag ccagcacctt cacgcgttac cgcttcacag agcgcgccat
    13621 cagacaggta taagttgctg ttatttaatg gtataggttg attaaaaacg gtgtgagttt
    13681 gccagtgcac tgtgtctccc tccatcaatg gcagtcaccc ttagtatggt cactgccatg
    13741 gattcctgac agaaagagat tgctaaaaca ttcttatcca gcaatgtaat gcggaacgaa
    13801 acgtgaggtg tctttggtga tcagcgtgtt atcttcacgg atccccattc cgcacgcttc
    13861 atcatcgaca atccagctac cgatgagtgt gtagctatcg ccaaatcgcg gcagaggttg
    13921 aaacgcctgg tagatcatcg gttcatcggc gtaatcacca tcagcgtggt caacgacgtt
    13981 attctgaccg tcgaaaatgg tgacgtttcc gccttcgcgt gagtagatcg gtttacgcac
    14041 atagctttcg ccagcggcaa tctgcggttt ttcgccctca aaccaggatg caagaaggtt
    14101 aggatgacca ggaaagaagc gccaaagcag cggcattagc cctttattac tcaagatact
    14161 tttccataac ggctccaccc attgctcgcg acgcttgcgc agcagcggac cgttatcgtc
    14221 acgcatcatc cactccagcg gatacagctt aaatgcacgc tggatgacat tatcatcaag
    14281 atcggtcagt acgccgccga cgcccaaacc gagatcttca atgtagataa accgcgactc
    14341 ctgccctgcc tgctgggcgc agtcctgcaa gtacagcacg gtactcctgt cttcatcggt
    14401 gtcctgacag cagcaaaaat aaaacggttc ccgactgtaa agctcactaa agcgcgaaat
    14461 caggcgttcc tgaatggcgt tgtactccag cagcttcacc ggcgcattgc cacaccaggc
    14521 aaaatccatc cggccataca gcgaaggatc gcgtgcgcgc cagctttcgg cgatcacatc
    14581 ccagtacaac ggcgggatcg ccagttgcgt caggatctct tcgtctttaa ccgcgcgatc
    14641 caccacctca aggcacatct gatgcagttc cgcagtcggt ttttcgatct gctcttcaat
    14701 ctggcgcaga gtaaaacggt aagcccgact ctcgtcccaa tagatttcat tgtcgatgat
    14761 atgaaagtcg aaaccgttgt tagcggcgat ctggtccaga tcccgtcgca caggaacgtt
    14821 gtgtctcagc atgattagcc tccccaatgc ccacgggcgc tggaagaacg accatagccg
    14881 ccgcgcgaaa cggttgacgc ttttttggtg gtaaagccgc ctgaagagta agactctttt
    14941 ttgccagaac cggagcgcca ggagtaatca ccggaagtgt tgagccagac ggggcgggaa
    15001 gcaaatgagg atccgccgct gttatagacg aacggctcat cgcgatcttt acgaataacc
    15061 cggcttaaca aaaatccaga aacgaccggg atccaactct gttcaacatt gtcgtagtag
    15121 caattttcgt acttagactg acaattctgc tgagtcatat tcttcggaac atcggcataa
    15181 aatgccgctt tggcgttgtt ccagccacgc gcgcaaatgt cggcattatt accgtcatca
    15241 atacaatcct gcactgtcga ataaaacgtt ccgtcgccgt cgttatcgac atcgccacta
    15301 tcgccacaac ctttcaatac aaaaaaagcg gcaccgccca ttagcgccaa cgttaagtat
    15361 ttttgtgcgt agcgattgcg acgcggttca aaaggattat tcggtctacc aatgcgactg
    15421 atcgctccgt gaccaatttt actgttattt cttgatttgc gttttctggc catgatcgtc
    15481 cattaccatg tcatacaagc tgcgttaaaa ataccgccag ccagcgcggc ggttcccata
    15541 aacattcctg ctgcggtatt gtgattaata attttttcgc ttaatgcggg catataaagt
    15601 ctgacaccag caaaaacgag taactgaatc accagtgcaa tcccgcccca ggcgaaatag
    15661 tctggaatac tcaccgcatt gattgccgca ctggataagg ggatcacgta acccaacaat
    15721 gtaccgctga atgccagtga caccgcggta ttattgtttt tgattaattg ccattcgttg
    15781 tgcggtgtaa ttttggagta gataaacaga aaaataatca ccatagccac gccaataaaa
    15841 aaataggcac taaaggcaag aagtgaatcc agtatatgca ttgtaaacgt ccttgtaatt
    15901 aaccaataat atgaagtgat gtcagcggga tatcgacacc caacgcgcgc gaaaataacc
    15961 actctggctc gccgagatcg ttaaaagatt cctcaccatt taacagtaaa tattcgtaag
    16021 tatcttcggt tacttgccgc tggtagccca tggtaaaatt atggacctcc catttggcat
    16081 ggttttgatt ttctactttt tccagcatgt agacgggttc gatatttccc ggttcttcgc
    16141 tgttaaaaaa tcgctgccag cgtttttcct gccagtttaa ggtcattgcc cccatcgttt
    16201 tggcgttgat cgcctcgcgc cagtgactct ctttactgat accgtagctc tcttcataga
    16261 caaagagctt gatatcatca atgtcatcaa tatcttcgcc gccggtggta ttgatttgca
    16321 gaaattcatc gcctgaagtg tagtaacgga aaatctggct accgcctccc agatcgatgc
    16381 ggctgacagc ggctaccgta aattcctcac ccggtagcgc aatcagcaat tcatcttcca
    16441 gcaaacgaaa cgctaacgtg tcgagcgtaa agccactatt gagatgaagt cccagcggac
    16501 cgcgagcgat agcaggctta ttatccttgc caaacagacg ctggaaaaaa ccagacatat
    16561 tttatcctta aaatagttgc cagcctttta gcgaggctgg caaaaaaatt actcgccctg
    16621 ttggcgttgc agtcttgcta atacatcctg ggctctactt ttattgctac cgccaattcc
    16681 ggcttccgcc agcttttcgt caaggtcgcg accgtctgcg actttctcca actgtgcggc
    16741 agcatccagg cgagcctgac gttcggcctg acgcgtttgc aggcgtttta aggattctgc
    16801 cgctgtcgaa acgctggaag atgcgccaac ggtagaggtt gttacagcct gttgtgcacg
    16861 ctgcatggct tcagtggctt taacgacttc catttgctgc tcaaactgag cgatacgctg
    16921 cgctgtcgct gtaactgctt tttccacgcc atcacgggag acttccagat tcgacaacac
    16981 ttgctcttca gcggtaatga gattctcaag gcgcgcgatt tcttcagcaa cttcgttaat
    17041 caacgacgga ttaacgttct tgcttaacgc ttccagcgca cgggcttcca gactggcttt
    17101 gcgctcacgt aaatctttca gcttatcgtg acttaatttc acccgcgcca gcagatcaac
    17161 gcgagatttt ccggctttat cgagttcagc tttagcgtca cgaatatgct gttccagcat
    17221 gcgcacgccc tgggtttctt caatggattc ttccgcctgg gagataaacg atttccccag
    17281 cgtaaataaa ctttttaaaa ttcccataaa tacccgtcct tgtaattagt gtgaatattc
    17341 ttctgtaatt tcagccagat ccaatgcgtt atctaccagc taggttatct caagcaggat
    17401 atcttcaaga gaagatttaa gcgataacgc cccgaaaaca atgtaatact cttcctgttg
    17461 cacgctggag attcctaccg atgacaacgg cat
//
LOCUS       DAJVUP010000084        17483 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.084, whole genome shotgun sequence.
ACCESSION   DAJVUP010000084 DAJVUP010000000
VERSION     DAJVUP010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17483
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.084"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(34..2631)
                     /gene="topA"
                     /locus_tag="OQQ75_002517"
     CDS             complement(34..2631)
                     /gene="topA"
                     /locus_tag="OQQ75_002517"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HCS1976806.1"
                     /translation="MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAA
                     KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK
                     ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID
                     RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE
                     FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT
                     TSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM
                     VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ
                     LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL
                     PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG
                     YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH
                     FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL
                     PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV
                     CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR
                     KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE
                     ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYV
                     DGKWVEGKK"
     gene            3011..3262
                     /locus_tag="OQQ75_002518"
     CDS             3011..3262
                     /locus_tag="OQQ75_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciN family protein"
                     /protein_id="HCS1976807.1"
                     /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV
                     FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD"
     gene            complement(3298..4347)
                     /gene="sohB"
                     /locus_tag="OQQ75_002519"
     CDS             complement(3298..4347)
                     /gene="sohB"
                     /locus_tag="OQQ75_002519"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HCS1976808.1"
                     /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV
                     NNLSEQYKEMKEELAAALMGSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR
                     VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR
                     LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKY
                     IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT
                     GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQCKRLIDRFTGSAAESAD
                     RLLLRWWQRGQKPLM"
     gene            4567..5325
                     /locus_tag="OQQ75_002520"
     CDS             4567..5325
                     /locus_tag="OQQ75_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HCS1976809.1"
                     /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR
                     NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGL
                     LGDICPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA
                     NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA
                     DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ"
     gene            5322..5913
                     /gene="cobO"
                     /locus_tag="OQQ75_002521"
                     /pseudo
     CDS             5322..5913
                     /gene="cobO"
                     /locus_tag="OQQ75_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
     gene            complement(5953..6825)
                     /gene="rluB"
                     /locus_tag="OQQ75_002522"
     CDS             complement(5953..6825)
                     /gene="rluB"
                     /locus_tag="OQQ75_002522"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HCS1976810.1"
                     /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV
                     TPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR
                     WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
                     QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI
                     PLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS
                     QVSGGRRSGGRNNG"
     gene            complement(7036..8931)
                     /locus_tag="OQQ75_002523"
     CDS             complement(7036..8931)
                     /locus_tag="OQQ75_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2207 domain-containing protein"
                     /protein_id="HCS1976811.1"
                     /translation="MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATL
                     QPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEP
                     WHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF
                     EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVL
                     YRWPHALLSNAPAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVD
                     VIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQYDKNQQILICV
                     NEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLF
                     YRPDTFLQWGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFAR
                     DDDKPCVNRAIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFSAVCLTGYLTGM
                     GYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISAN
                     LGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAG
                     GGGGGGW"
     gene            complement(8959..9579)
                     /locus_tag="OQQ75_002524"
     CDS             complement(8959..9579)
                     /locus_tag="OQQ75_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HCS1976812.1"
                     /translation="MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKI
                     EDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILK
                     GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI
                     KDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL"
     gene            complement(9576..10457)
                     /gene="yciV"
                     /locus_tag="OQQ75_002525"
     CDS             complement(9576..10457)
                     /gene="yciV"
                     /locus_tag="OQQ75_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exoribonuclease"
                     /protein_id="HCS1976813.1"
                     /translation="MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITD
                     HDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQ
                     QTERRNQRAQQIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADV
                     FKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAE
                     HHGDAMEVAQCQQSPNERTQLTTLARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVE
                     GVWQLWEQPQNTTEREL"
     gene            10595..10639
                     /gene="trpL"
                     /locus_tag="OQQ75_002526"
     CDS             10595..10639
                     /gene="trpL"
                     /locus_tag="OQQ75_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon leader peptide"
                     /protein_id="HCS1976814.1"
                     /translation="MKAIFVLKAWWRTS"
     misc_feature    10616..10709
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00513"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Trp leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00513"
     gene            10731..12293
                     /gene="trpE"
                     /locus_tag="OQQ75_002527"
     CDS             10731..12293
                     /gene="trpE"
                     /locus_tag="OQQ75_002527"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HCS1976815.1"
                     /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADID
                     SKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLTLLDNALPAGVENEQSPNCRV
                     LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED
                     LPQLSAENNCPDFCFYLAETLMVIDHQKKNTRIQASLFAPNEEEKQRLTARLNDLRQQ
                     LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRTGEIFQVVPSRRFSLPCPS
                     PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR
                     RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR
                     YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG
                     GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR
                     AIATAHHAQETF"
     gene            12293..13888
                     /gene="trpD"
                     /locus_tag="OQQ75_002528"
     CDS             12293..13888
                     /gene="trpD"
                     /locus_tag="OQQ75_002528"
                     /EC_number="2.4.2.18"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase glutamate
                     amidotransferase component TrpG/anthranilate
                     phosphoribosyltransferase TrpD"
                     /protein_id="HCS1976816.1"
                     /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL
                     ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG
                     EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD
                     ADRVCGFQFHPESILTTQGARLLEQTLAWAQRKLEPTNTLQPILEKLYQAQTLSQQES
                     HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI
                     VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD
                     KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV
                     YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF
                     GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA
                     QTVLEVLRSGSAYDRVTALAARG"
     gene            13889..15250
                     /gene="trpCF"
                     /locus_tag="OQQ75_002529"
     CDS             13889..15250
                     /gene="trpCF"
                     /locus_tag="OQQ75_002529"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HCS1976817.1"
                     /translation="MMQTVLAKIVADKAIWVETRKQQQPLASFQNEVQPSTRHFYDAL
                     QGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFDFLP
                     IVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMG
                     GLTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGI
                     NTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG
                     AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQL
                     HGNEDQLYIDTLREALPTHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDW
                     SLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTL
                     RAY"
     gene            15262..16455
                     /gene="trpB"
                     /locus_tag="OQQ75_002530"
     CDS             15262..16455
                     /gene="trpB"
                     /locus_tag="OQQ75_002530"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HCS1976818.1"
                     /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ
                     FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG
                     KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH
                     SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVCEFQRMIGEETKAQILE
                     REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV
                     GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE
                     AFKTLCLHEGIIPALESSHALAHALKMMRETPEKEQLLVVNLSGRGDKDIFTVHDILK
                     ARGEI"
     gene            16455..17261
                     /gene="trpA"
                     /locus_tag="OQQ75_002531"
     CDS             16455..17261
                     /gene="trpA"
                     /locus_tag="OQQ75_002531"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HCS1976819.1"
                     /translation="MERYESLFAQLKERKEGAFVPFVTLRDPGIEQSLKIIDTLIEAG
                     ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY
                     ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD
                     DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD
                     QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATRS"
BASE COUNT         4221 a         4671 c         4345 g         4246 t
ORIGIN      
        1 cctttgttta taaaaacctg acagaattaa aggttatttt tttccttcaa cccatttgcc
       61 atcaacataa aatgctgacc agccagtcgc ctttccgtct ttttccgaag agacatattg
      121 ctgtttggtt ttacggctaa agcgaaccat ggtcttatta ccttccggat cctgctgtgg
      181 cgcatcggcc agataacgca gtttttccgg cagacggtcg cggaagcgat aaagctcttc
      241 caccagtggc gcacgcgttt cacgcgattt cgggaaagtg ttggcagcca ggaaaacacc
      301 cgcagcgccg tcacgcagca cgaaataagc atctgatttt tcgcacggca gctcaggtaa
      361 tggcaccgga tcttctttcg gtggtgccac ttcgccgtta cgtaaaatct tacgtgtgtt
      421 tttacactct tcgttggtgc aggccatgta tttaccgaaa cgccccattt tcaggtgcat
      481 ttcagagcca catttttcac actcaacgat cgggccgtca taacctttaa tgcggaattc
      541 gccctcttcg atctcgtaac cgtcgcaggt tgggttatta ccacagacat gcaacttacg
      601 tttcggatcg atgagatagc tgtccatcgc cgtgccgcat ttcgggcaac gacgttttgc
      661 gcgcagcgcg ttggtttcag cgtcttcgcc ttccagtacg ttcagcactt cgttttccgg
      721 caccaggtta atggtggttt tgcaacgctc tttcggcggc agcgcataac cagaacagcc
      781 aaggaatacc ccggtgctcg ctgtgcgaat ccccattttg cgaccacaag tcgggcagtc
      841 aatgctggtc agaaccatct ggttcgggcg cataccaccc tcttccggat ctttttcagc
      901 tttatctaac tgctgggtga aatccgagaa gaagtgatcc agtacagctt tccactctgc
      961 ttcgtgattt gccacctggt cgaggctgtt ttccatctgt gcggtgaagt cgtagttcat
     1021 taactcgcgg aaattttctt caaggcgatc ggtgacgatt tcgcccattt tttccgcata
     1081 gaaacgacga ttttctactc gcacgtagcc acgatcctga atggtcgaaa tgatcgacgc
     1141 ataggtagac ggacgaccga taccgcgttt ttccagctct ttaaccagcg atgcttcact
     1201 gaaacgggct ggcggcttgg taaagtgctg ggctggtgta agttcaacga gcgtcagagc
     1261 atcgccttta ttaactgctg gtaagatgcg atcttcatcg cctttacgca acgcaggcat
     1321 cacttttgtc cagccatcaa aacgcaaaat acgaccgcgt gctttcaggc ggaaatcgcc
     1381 cgcaccaacg gtcagcgtcg tggagtcata tttcgctggg gtcatctggc aggctacgaa
     1441 ctgacgccag attaactggt acagtttctg cgcatctgct tccatatcct tcagcgattc
     1501 cgccatcaca ttgacgtcag aaggacgaat cgcttcgtgc gcttcctgtg agttttcttt
     1561 gctggcgtac tgattcggac tttccggcag atatttctta ccaaaattat cgctgatata
     1621 accgcgaacc atatttaccg cgtcctgact caggttagtg gagtcggtac gcatgtaagt
     1681 gatatagcct gcttcataca aacgctgcgc catcatcatg gtttttttca cgccaaatcc
     1741 aagacgggtg ctggcagctt gttgcagcgt agaggtaata aaaggagcgc caggtttact
     1801 ggttgtcggt ttgtcttcac gttccagcac gctgtagcgc gctttttcca gcagacttac
     1861 cgcagcctga gtttgttctt tgttgaccgg acggaacggt ttgtcgttct gatgagtcac
     1921 ctgtaacgcc aacgcttcac cagatggcgt ggtcgtgctg gcatcgactt cccagaactc
     1981 ttccggcacg aacgctttaa tttcacgctc acgctcgacc accaggcgaa ccgccaccga
     2041 ctgcacacga ccggcagaca gaccacgagc gatctttttc catagcagcg gcgaaaccat
     2101 ataccccacc acgcggtcca taaagcgacg cgcctgctgg gcattaacac gatcaatatt
     2161 cagctcaccc ggtttgttaa atgcctggcg gatcgcgttt ttagtaattt cgttaaacac
     2221 cactcggcta tagcgcgcat catcaccccc aatcacttcc cgcaggtgcc atgcaatggc
     2281 ttccccttcg cggtcaaggt cggttgcgag atagatgtgg tcggcttttt cagccagttg
     2341 tttcagttca gagacgacct tctctttacc aggcaacact tcatagtgcg cctcccaatt
     2401 gtgccacggg tcaaccccca tacggttgac gagagcgcca cgttcatcct ttttaggctt
     2461 tttagccgtc ttggtggagg tagagtcggc actctttttg gcagctgagc cactggtcgg
     2521 caaatcgcgg atgtgaccga cgctggattt caccacgtag tcactaccca gatacttgtt
     2581 gatcgttttg gcttttgccg gggactcaac gatgacaaga gctttaccca tattcacctt
     2641 acctaatttg attcttccag gaatgcgtcg cacgttgata aaccttccac tggcaacgag
     2701 ttaccgatat ggactcgttc tctgcggata tcaacccctt gtcgtgactc tgttcacgaa
     2761 aattcaggtg actgagttaa caggtcttgg cctacaggcg ctatagcacg acggaatttt
     2821 ggtcgaatgt caagcaaatc tattgccaga ttgacgaaag cgtcacactg tacctgataa
     2881 aatccgatac gcaactttat tagcatgcaa aatccaaagt tgccagtaag gcgctcttgc
     2941 caccagcgtg gtatatttgt ctgcaagcca tgcctggcgt agactaatgt ccttatttaa
     3001 ggagtaaata atgaacaaag agacacaacc catcgaccgc gaaacgctgt tgaaagaggc
     3061 caacaaaatc attcgtgagc atgaggatac gctcgcaggg attgaagcca ccggcgtcac
     3121 gcagcgtaat ggcgtgctgg tatttaccgg cgactacttt ttagatgaac aaggattgcc
     3181 aacagccaaa agcaccgcgg tgtttaatat gttcaaacac ctggcccatg tgctttcaga
     3241 aaaatatcat ctggttgatt aaagcaaaac gcgaggtctt agcctcgcgt ttgtctttta
     3301 catcaatggc ttttgacccc gctgccacca gcgtagcaac aatcgatcgg cgctctctgc
     3361 cgcgctgccg gtgaatcggt caatgagtcg tttacactgc atatagcgta cattaaccac
     3421 ttcacggcct tccatcaggc taagaataac ttcatcactg gtgttgattt catcaaccag
     3481 gcctttctct accgcctgtt gtccgtacca gtgttcacct gttgccacct gttcaatatc
     3541 cagagacgga cgcatacgct tcacaaaatc tttaaacaac tgatgcgttt cgttcaactc
     3601 ttcgcggaat ttctcccgcc cttcttcggt attttcaccc agcaacgtca gagtacgctt
     3661 atactgcccg gcagtgtgca gttcgatatc aatatatttg cttttcagga agcggttaaa
     3721 gttgggcatt tgcgccacca ccccaatgga acccacaata gcaaacggtg cggaaacaat
     3781 tttgtccgcc acacaggcca tcatgtaacc gccgctggca gcgactttgt ctaccgtaac
     3841 agttaaagga atgtttttat cacgcagacg ctgcagctgc gaagccgcca acccgtaacc
     3901 atgcaccatg ccaccagggc tttccagacg gagcacaacc tgatcctgcg gtttgaatgc
     3961 tgcgagtacc gccgttatct cttcacgtag cgagttcact tcatgggcgt ccatgctgcc
     4021 tttaaaatcc agcacccaga cgcgaggttt actgtcagtt gccacctcgc ccagtttggc
     4081 tttcgctttt gctgctttcg cttcttgctt gtgctttttc ttctgcgctt tgtgccactg
     4141 tttttgctga tgtgagccca tcagcgccgc ggccagttct tctttcatct ccttatactg
     4201 ttcgctgaga ttgttgaccc gtaactcgcc acgctggcgt ttattacgtt gagcaacatt
     4261 gacaataatg gcggcaatcg ccgcaatcgc tagcacaacg gtaacgattt tcgccaaaaa
     4321 caaaccatat tcagacaaca attccacgag tccccacctt ggttaaacaa cgctttggct
     4381 cacagtttac aacaggcatg ttaagccgtc tcgcagagat gttattgcag cgaaagtatg
     4441 acaaagtatc cattttgcgg tgttatcgcc ccaggctgat tgaaatgccc ttctgtttca
     4501 ggcataaagc cccaaagtca taaagtacac tggcagcgcg acagacaacg tcgttgagga
     4561 gtagccatgc attaccagcc aaaacaagat ttactcaatg atcgcattat cctggtgacg
     4621 ggagccagcg atgggattgg tcgtgaagcc gcgatgacgt atgcacgcta tggtgcgaca
     4681 gtgattctgt tgggccgtaa tgaagaaaaa ttacgtcagg tagccagcca cataaacgaa
     4741 gaaactgggc gtcagccaca gtggtttatt ctcgatttgc tgacctgcac gtccgaaaat
     4801 tgccaacaac tggcacagcg cattgtcgtt aattatccgc gtctggatgg tgttttgcat
     4861 aatgccggat tgctcggcga tatttgccca atgagcgaac aaaatccgca ggtctggcag
     4921 gacgtcatgc aggtcaacgt taatgccacc tttatgctca cccaggcact gcttccttta
     4981 ttactcaaat cggacgccgg ttcactggtc tttacttcat caagcgttgg acgtcaggga
     5041 cgagctaact ggggtgcata tgcagcgtcg aaatttgcca ccgaagggat gatgcaggta
     5101 ctggccgatg aatatcagca gcgcctgcgc gtcaactgca ttaacccagg cggtacgcgc
     5161 accgcaatgc gcgcaagcgc cttcccgacc gaagatccac agaaacttaa aacacccgct
     5221 gatatcatgc cgctctacct ctggctgatg ggcgatgaca gccgccgtaa aaccggcatg
     5281 acctttgacg cccaaccggg ccgtaaacca ggaatttccc aatgagtgat gaacgctacc
     5341 aacagcgtca gcagcgagtg aaagaaaaag tagatgctcg tgtggcacag gccccaggat
     5401 gaacgcggta ttatcatcgt ctttaccggc aatggaaaag gcaaaaccac cgcggcattt
     5461 ggtacggcaa cacgcgcagt tggtcacgga aaaaaagtgg gcgtcgtgca gtttattaaa
     5521 ggcacctggc ctaatggcga acgcaatctg ctggaaccac atggcgttga gtttcaggtg
     5581 atggcaacgg gctttacctg ggatacacaa aaccgcgagt ctgataccgc cgcctgccgc
     5641 gaagtctggc aacatgcaaa gcggatgctt gctgattcct cactggatat ggttttgctt
     5701 gatgaactga cgtatatggt ggcgtatgac tatttgccac tggaagaagt ggtgcaggcg
     5761 ttaaatgaac gtccacatca acagacggtg attatcacgg gtcgaggctg tcatcgggat
     5821 attcttgaac tggcggatac ggtaagtgag ctgcgcccca tcaaacatgc gtttgatgcc
     5881 ggtgttaagg cgcaaatagg gattgattat taatctgtaa aaatgccgga tatgacgtcc
     5941 ggcatacttt gattaaccgt tattacgccc gccagaacga cgaccgccgc tcacctgact
     6001 gtgacgtttc accgcacgac gaatctgatt agccttcatg cgacgacggt ctttttctac
     6061 agcgacttta gagctggttt ctggcggaag ctccaccagt tcgcgcagat agttagtctg
     6121 ggcgaggtcc agctccgtcc agccaccgcg tggcagacct tttggcagtg ggatatcacc
     6181 gtaacgaaca cggatcaggc ggctcacctg cacaccaacc gcttcccaca gacgacgaac
     6241 ttcacggtta cggccttcgg tcagagtcac gttgtaccac tggttgatcc cttcgccgcc
     6301 gctgaacttg atggttttaa aagctgccgg accatcttcc agttgcacgc cacgactcaa
     6361 atcacgcagt ttcgcgtcgt caacctgacc aaatacacgc acggcgtatt cacgttcaac
     6421 ttcacggctt ggatgcatta aacggtttgc cagttcacca tcggtggtga acagcagcag
     6481 accacaggtg ttaacgtcca gacgacctac ggcaatccag cgtgcgccac gcagctttgg
     6541 cagacggtca aacaccgtcg gacgcccttc cggatcgtta cgggtacaca actcaccttc
     6601 cggtttgtaa taggccagaa cgcgacaaat ttgttcagcg gactcacgta ccgaaatcag
     6661 atgaccatcg atacgaattt tcagcccagg ggtaacttca acgcgatcgc cgagtttagc
     6721 aattttgcca tcaacactca cacgaccggc ttcaataata gattcgattt cacggcggga
     6781 gccgtggcca gcgcgggcca gcactttctg taatttttcg ctcatagagc ttccttttgg
     6841 tgtcgccttc ccaggcgtct gatatgcttt tgtgcaacag tgagtcagaa cttacatctg
     6901 actcactgat agtaaagtct gtttgaactc ttcaggcctt aagtaaacga ctcgacgttt
     6961 atcggcctgg ctttgaggcg caacatacta cactatcttt atggttaaag cttgtttcga
     7021 ttaacatcag cttaattacc agccaccacc gcctccgcca cccgcgccgc cgccagcacc
     7081 accaccggaa taacttcgcc ccaacaaact ggtattggcc ccgcaactta ggtgcgtctg
     7141 taatgagaat aaaacgccgt tacgggcaat ctctggagcg cgaatcgccg aagaaagcga
     7201 aggggcaatg cgtaacgccc attccctccc caaatttgcc gatatagccc aacctagcaa
     7261 cgcgtaatcc agtttccgtg tttccccttt ccgccgacgt ccactgtgtg ttgctgcctc
     7321 tttacgcgca agatagttaa cgatagcttc accgcgggca taacgttgct gcccagtttg
     7381 ggtaaacttt ggcagaaaaa tataccccat gccagtgaga taaccggtca ggcaaacagc
     7441 gctaaaataa cccgctggca tataccagta aaagaataca tctccgacat tgatatagag
     7501 agaatagaag gccacgcctg aacaaatcag tggtaaaaac aaagtgatga ttgcacgatt
     7561 aacgcaaggc ttgtcatcat cgcgggcaaa caaaagctca agggaacaaa ataaaaaagg
     7621 aataatccag cagatcataa taaacatatc gcctaccaga ctcattcctg cccaacctac
     7681 gggactcagg ttaccgtaga gaatgatcgc caatattgcc agtccacccc attgcaaaaa
     7741 cgtatcaggc cggtaaaaca aagacttttt acgcggcaga taaaatttct gcatccgtaa
     7801 aaatgccctg cgtaagactc tgttgcgtct ccccgtaaga acgaccttat cgcctttacg
     7861 aaataacgct tccagtaata actgctctgc gggcagtaat acctcattat ttctggtcgc
     7921 gccttcatta acacaaatca ggatttgctg gttcttatca tactgatctt ccagatgaat
     7981 ttttcccttc acgatcagat ttacgatatc ggcacagaaa cctttatcgt cgtaaaccag
     8041 cttcgcatcg agacgtaaca tgccgggcgt gtaatctggc ggaatgacat cggtttcaat
     8101 cacatctacc ggcgtaaatt gcggcctgcg cttccagaga tataaccatc cacaaaccag
     8161 gaataaacac ggaaaccaaa ttaacaacga tgacgtggag ggtaaaagaa gatggctgaa
     8221 aatattcgtc gtttgtggag ccggggcatt gctaagtaac gcgtgaggcc agcggtagag
     8281 taccgtgaaa tcttcacgat aaaacggatc gcgggattca attcttccgt cctcaaggat
     8341 gcggccattt cgatatgtgt cgccctcttc tccagtaaag agatcgattt cgctaaatgg
     8401 attacccgcg atatcaggga acttgagtga aaatcgggtc ttatagattt caaacggcca
     8461 gtggttacca gtcacgttcc agattaacag atctgaatct ccctcacgca ggaaagcatt
     8521 tttaacctga taatgaattt gataatgata gtcgccttga ggcaagaaac gttgtttatc
     8581 gcccacgaca atactcatta acccgatatg ccagtcaaga tgccagggtt caggaatacc
     8641 atcacgagtg acgccaacaa tatgatagtt cagcagtgca gcgtccccat caggctgcat
     8701 ccagagtcgt ggtaaatcac gataaaatcc gtgcttaatc tgctgatttc gcgcctgaaa
     8761 atgaatattt tctttgatgt cgagcacccc atccggttgc agagtggctt caacatcaaa
     8821 gagcgagatc ccttcttcat aagaagggat ctccgggttt tctgcataac ttagagatga
     8881 tacaaacagc cctgctatca acagcaaaat gcagcgaaac ttccctgcca tagtcttcca
     8941 tccgtggaac gcaatttgtt ataagaaagg cttcacatca cccacgcctt cacgcaccac
     9001 gaccggcgta tcatcggtaa gatcaatgac cgttgtcggt ttctgtccga gatagccgcc
     9061 gtggataatc aaatccacct gtttttccag acggtcttta atttcttctg gatcggattc
     9121 ggtaaattcg ctgcctggca gcattagcga agtggaaagc atcggttcgc ccagtgcttc
     9181 aagcaacgcc tgcgcaatcg ggttagaagg cacacgcata ccgatggttt tgcgtttttc
     9241 ctgcaacaga cggcgtggca cctccttcgt ccccttcagg atgaaggtat agttgcccgg
     9301 cgtgttgttt ttcattaaac gaaacgcaac gttatccacg aatgaatagg tcgaaagttc
     9361 agaaagatcg cgacacatca gggtaaagtt gtgaccgtcc ggcagctggc gaatacgaca
     9421 aatacgctcc atcgcgtttt tatcttcaat tttacagccg agcgcatagc cggaatcagt
     9481 tggataaaca atcaccccgc ctttacgcac gatctccacc gcctggttga tcagacgttg
     9541 ctgcgggtta tcaggatgaa tataaaaaaa ctggctcata attccctctc tgtggtgttc
     9601 tgcggctgtt cccatagctg ccagacgcct tcaacgcctg cgggcagcca gagtttacga
     9661 cccagttcga tccacgggca tggctgatga aaatcagatc cttgtgatgc ccataaatga
     9721 tgctgacgcg caagtgtcgt caactgggtg cgttcattgg gcgattgctg gcactgcgcg
     9781 acttccatcg cgtcgccgtg gtgttcggca aaatgcgcaa ccaatctttt cagccattta
     9841 gcactaagat tgtaccgccc aggatgagct agcaccgcct taccgccaga atgatgaatg
     9901 acatcaatag cttgttctat tgtacaccac tgtggcggaa cgtatccggt tttcccgcgc
     9961 gccagatact ttttaaagac atctgccatt gaactggctt tgccgcactc aacaaggaaa
    10021 cgcgcaaaat gaccgcgcgt cactgcgccg ccctgcgcca gtcgttgtgc gccttccagc
    10081 gccccaggta tttgcgcttt ttcaagtctt tcggcaattt gctgcgcccg ctgattgcgc
    10141 cgttctgtct gctgcgcgag gaactcacac attagcggat gagtaatatc aatattcagc
    10201 ccgacaatat gaatttcatg attttcccag accgtggaaa tttccacgcc gggaataaga
    10261 ttcagcgcca gtcccgaacg tgaaatttcc tctcttgctg gcgcgattgc agctgtggtg
    10321 tcatggtcgg tgatcgccag ggtgccgacg cgcatctcga ctgcacggtg caccaatgct
    10381 tctggcgtca ggcagccatc ggaagctgtg gtatggctgt gcaggtcgta aatcactgcg
    10441 taattcgtgt cgctcaaggc gcactcccgt tctggataat gttttttgcg ccgacatcat
    10501 aacggttctg gcaaatattc tgaaatcagc tgttgacaat taatcatcga actagttaac
    10561 tagttcgcaa gttcacgtaa aaagggtatc gacaatgaaa gcaattttcg tactgaaagc
    10621 ttggtggcgc acttcctgaa acgggcagtg tattcaccat gcgtaaagca atcagatacc
    10681 cagcccgcct aatgagcggg cttttttttg aacaaaatta gagaataaca atgcaaacac
    10741 aaaaaccgac tctcgaactg ctaacctgcg aaggcgctta tcgcgacaac ccgactgcgc
    10801 tttttcacca gttgtgtggg gatcgtccgg caacgctgct gctggaatcc gcagatatcg
    10861 acagcaaaga tgatttaaaa agcctgctac tggtagacag tgcgctgcgc attacagcat
    10921 taggtgacac tgtcacaatt caggcacttt ccggcaacgg cgaagccctg ctgacactac
    10981 tggataacgc cctgcctgcg ggtgtggaaa atgaacaatc accaaactgc cgtgtgctgc
    11041 gcttcccccc tgtcagtcca ctgctggatg aagacgctcg cttatgctcc ctttcggttt
    11101 ttgacgcttt ccgtttattg cagaatctgt tgaatgtacc gaaggaagaa cgagaagcaa
    11161 tgttcttcgg cggcctgttc tcttatgacc ttgtggcggg atttgaagat ttaccgcaac
    11221 tgtcagcgga aaataactgc cctgatttct gtttttatct cgctgaaacg ctgatggtga
    11281 ttgaccatca gaaaaaaaac acccgcattc aggccagcct gtttgctccg aatgaagaag
    11341 aaaaacaacg tctcactgct cgcctgaacg atcttcgcca gcagctgacc gaagccgcgc
    11401 cgccgctgcc ggtggtttcc gtgccgcata tgcgttgtga atgtaaccag agcgatgaag
    11461 agttcggtgg cgtggtgcgt ttgttgcaaa aagcgattcg caccggagaa attttccagg
    11521 tggtgccgtc tcgccgtttc tctctgccct gcccgtcacc gctggcggcc tattacgtgc
    11581 tgaaaaagag taatcccagc ccgtacatgt tttttatgca ggataatgat ttcaccctgt
    11641 ttggcgcgtc gccggaaagt tcgctcaagt atgacgccac cagccgccag attgagatct
    11701 acccgattgc cggaacacgc ccgcgcggtc gtcgcgccga tggttcactg gacagagacc
    11761 tcgacagccg catcgaactg gaaatgcgta ccgatcataa agagctttct gaacatctga
    11821 tgctggtgga tctcgcccgt aatgatctgg cacgcatttg cacccccggc agccgctacg
    11881 tcgccgatct taccaaagtt gaccgttact cttacgtgat gcacctggtc tcccgcgtgg
    11941 tcggtgagct gcgccacgat ctcgacgccc tgcacgctta ccgcgcctgt atgaatatgg
    12001 ggacgttaag cggtgcgccg aaagtacgcg ccatgcagtt aattgccgag gcggaaggtc
    12061 gtcgccgcgg cagctacggc ggcgcggtag gttatttcac cgcgcatggc gatctcgaca
    12121 cctgcattgt gatccgctcg gcgctggtgg aaaacggtat cgccaccgtg caagccggtg
    12181 ctggcatagt ccttgattct gttccgcagt cggaagccga cgaaacccgt aataaagccc
    12241 gcgctgtact gcgcgctatt gccaccgcgc atcatgcaca ggagactttc tgatggctga
    12301 cattctgctg ctcgataata tcgactcttt tacgtacaac ctggcagatc agttgcgcag
    12361 caatgggcat aatgtggtga tttaccgcaa ccatattccg gcgcagacct taattgaacg
    12421 cctggcgacg atgagcaatc cggtgctgat gctttctcct ggccccggtg tgccgagcga
    12481 agccggttgt atgccggaac tcctcacccg cttgcgtggc aagctgccca ttattggcat
    12541 ttgcctcgga catcaggcga ttgtcgaagc ttacgggggc tatgtcggtc aggcgggcga
    12601 aattctccac ggtaaagcct ccagcattga acacgacggt caggcgatgt ttgccggatt
    12661 aacaaacccg ctgccagtgg cgcgttatca ctcgctggtt ggcagtaaca ttccggccgg
    12721 tttaaccatc aacgcccatt ttaatggcat ggtgatggca gtacgtcacg atgcggatcg
    12781 cgtttgtgga ttccagttcc atccggaatc cattcttact acccagggcg ctcgcctgct
    12841 ggaacaaacg ctggcctggg cgcagcggaa actagagcca accaacacgc tgcaaccgat
    12901 tctggaaaaa ctgtatcagg cgcagacgct tagccagcaa gaaagccacc agctgttttc
    12961 agcagtggta cgtggcgaac tgaaaccgga acaactggcg gcggcgctgg tgagcatgaa
    13021 aattcgcggc gagcacccga acgagatcgc cggagcagca accgcgttac tggaaaacgc
    13081 cgcgccgttc ccgcgcccgg attatctgtt tgccgatatc gtcggcaccg gtggtgacgg
    13141 cagtaacagc atcaatattt ccaccgccag tgcgtttgtc gccgcggcct gtgggctgaa
    13201 agtggcgaaa cacggcaacc gtagcgtctc cagtaaatct ggttcgtccg atctgctggc
    13261 ggcgttcggt attaatcttg atatgaatgc cgataaatcg cgccaagcgc tggatgagtt
    13321 aggcgtatgt ttcctctttg cgccgaaata tcacaccgga tttcgccatg cgatgccggt
    13381 tcgccagcaa ctgaaaaccc gcactctgtt caacgtgctg ggaccattga ttaacccggc
    13441 gcatccgccg ctggcgttaa ttggtgttta tagtccggaa ctggtgctgc cgattgccga
    13501 aaccttgcgc gtgctggggt atcaacgcgc ggcggtagtg cacagcggcg gtatggatga
    13561 agtttcatta cacgcgccga caatcgttgc cgaactgcat gacggtgaaa ttaagagcta
    13621 tcagctaact gcagaagatt ttggcctgac accctaccac caggagcaac tggcaggcgg
    13681 aacaccggaa gaaaaccgtg acattttaac acgcttgtta caaggtaaag gcgacgccgc
    13741 tcacgaagca gccgtcgcgg cgaatgtcgc catgttaatg cgcctgcatg gccatgaaga
    13801 tctgcaagcc aatgcgcaaa ccgttcttga ggtactgcgc agtggttccg cttacgacag
    13861 agttaccgca ctggcggcac gagggtaaat gatgcaaacc gttttagcga aaatcgtcgc
    13921 agacaaggcg atttgggtag aaacccgcaa acagcagcaa ccgctggcca gttttcagaa
    13981 tgaggttcag ccgagcacgc gacattttta tgatgcgcta cagggtgcac gcacggcgtt
    14041 tattctggag tgcaagaaag cgtcgccgtc aaaaggcgtg atccgtgatg atttcgatcc
    14101 ggcacgcatt gccgccattt ataaacatta cgcttcggca atttcggtgc tgactgatga
    14161 gaaatatttt caggggagct ttgatttcct ccccatcgtc agccaaatcg ccccgcagcc
    14221 gattttatgt aaagacttca ttatcgaccc ttaccagatc tatctggcgc gctattacca
    14281 ggccgatgcc tgcttattaa tgctttcagt actggatgac gaccaatatc gccagcttgc
    14341 agccgtcgct cacagtctgg agatgggggg gctgaccgaa gtcagtaatg aagaggaact
    14401 ggagcgcgcc attgcattag gggcaaaggt cgttggcatc aacaaccgcg atctgcgtga
    14461 tttgtcgatt gatctcaacc gtacccgcga gcttgcgccg aaactggggc acaacgtaac
    14521 ggtaatcagc gaatccggca tcaatactta cgctcaggtg cgcgagttaa gccacttcgc
    14581 taacggtttt ctgattggtt cggcgttgat ggcccatgac gatttgcacg ccgccgtgcg
    14641 ccgggtgttg ctgggtgaga ataaagtatg tggcctgacg cgtgggcaag atgctaaagc
    14701 agcttatgac gcgggcgcga tttacggtgg gttgattttt gtcgcgacat caccgcgttg
    14761 cgtcaacgtt gaacaggcgc aggaagtgat ggctgcggca ccgttgcagt atgttggcgt
    14821 gttccgcaat cacgatattg ccgatgtggt ggacaaagct aaggtgttat cgctggcggc
    14881 agtgcaactg catggtaatg aagatcagct gtatatcgat acgctgcgtg aagctctgcc
    14941 aacacatgtt gccatctgga aagcattaag cgtcggtgaa accctgcccg cccgcgagtt
    15001 tcagcacgtt gataaatatg ttttagacaa cggccagggt ggaagcgggc aacgttttga
    15061 ctggtcacta ttaaatggtc aatcgcttgg caacgttctg ctggcggggg gcttaggcgc
    15121 agataactgc gtggaagcgg cacaaaccgg ctgcgccgga cttgatttta attctgctgt
    15181 agagtcgcaa ccgggcatca aagacgcacg tcttttggcc tcggttttcc agacgctgcg
    15241 cgcatattaa ggaaaggaac aatgacaaca ttacttaacc cctattttgg tgagtttggc
    15301 ggcatgtacg tgccacaaat cctgatgcct gctctgcgcc agctggaaga agcttttgtc
    15361 agcgcgcaaa aagatcctga atttcaggct cagttcaacg acctgctgaa aaactatgcc
    15421 gggcgtccaa ccgcgctgac caaatgccag aacattacgg ctgggacgaa caccacgctg
    15481 tatctgaagc gcgaagattt gctgcacggc ggcgcgcata aaactaacca ggtgctcggt
    15541 caggctttac tggcgaagcg gatgggtaaa accgaaatca tcgccgaaac cggtgccggt
    15601 cagcatggcg tggcgtcggc ccttgccagc gccctgctcg gcctgaaatg ccgtatttat
    15661 atgggtgcca aagacgttga acgccagtcg cctaacgttt ttcgtatgcg cttaatgggt
    15721 gcggaagtga tcccggtaca tagcggttcc gcgacgctga aagatgcctg taacgaggcg
    15781 ctgcgcgact ggtccggcag ttatgaaacc gcgcactata tgctgggcac cgcagctggc
    15841 ccacatcctt atccgaccat tgtgtgtgag tttcagcgga tgattggcga agaaacgaaa
    15901 gcgcagattc tggaaagaga aggtcgcctg ccggatgccg ttatcgcctg tgttggcggc
    15961 ggttcgaatg ccatcggcat gtttgcagat ttcatcaacg aaaccaacgt cggcctgatt
    16021 ggtgtggagc cgggtggtca cggtatcgaa actggcgagc acggcgcacc gctaaaacat
    16081 ggtcgcgtgg gcatttattt cggtatgaaa gcgccgatga tgcaaaccga agacgggcag
    16141 attgaagaat cttactccat ctccgccgga ctggatttcc cgtctgtcgg cccacaacac
    16201 gcgtatctta acagcactgg acgcgctgat tacgtgtcta ttaccgatga tgaagccctt
    16261 gaagccttca aaacgctgtg cctgcacgaa gggattatcc cggcgctgga gtcttcccac
    16321 gccctggccc atgcgctgaa aatgatgcgc gaaaccccgg aaaaagagca gctactggtg
    16381 gttaaccttt ccggtcgcgg cgataaagac atcttcaccg ttcacgatat tttgaaagca
    16441 cgaggggaaa tctgatggaa cgctacgaat ctctgtttgc ccagttgaag gagcgcaaag
    16501 aaggcgcatt cgttcctttc gtcacgctca gggatccggg cattgagcag tcattgaaaa
    16561 ttatcgatac gctaattgaa gccggtgctg acgcgctgga gttaggtatc cccttctccg
    16621 acccactggc ggatggcccg accattcaaa acgccactct gcgcgccttt gcggcaggtg
    16681 tgactccggc acaatgtttt gaaatgctgg cactgattcg ccagaaacac ccgaccattc
    16741 ccattggcct gttgatgtat gccaatctgg tgtttaacaa aggcattgat gagttttatg
    16801 cccagtgcga gaaagtcggc gtcgattcgg tgctggttgc cgatgtgcca gttgaagagt
    16861 ccgcgccctt ccgccaggcc gcgttgcgcc ataatgtcgc acctatcttc atctgcccgc
    16921 caaatgccga tgacgacctg ctgcgccaga tagcctctta cggtcgtggt tacacctatt
    16981 tgctgtcacg agcgggcgtg accggcgcag aaaaccgcgc cgcgttaccc ctcaatcatc
    17041 tggttgcgaa gctgaaagag tacaacgctg cacctccatt gcaggggttt ggtatttccg
    17101 ccccggatca ggtaaaagca gcgattgatg caggagctgc gggcgcgatt tctggttcgg
    17161 ccattgttaa aatcatcgag caacatatta atgagccaga gaaaatgctg gcggcactga
    17221 aagtttttgt acaaccgatg aaagcggcga cgcgcagtta atcccacagc cgccagttcc
    17281 gttggcggca ttttaacttt ctttaatgaa gccggaaaaa tcctaaattc atttaatatt
    17341 tatcttttta ccgcttcgct tacccctgtc gaacgtcaac ttacgtcatt tttccgccca
    17401 acagtaatat aatcaaacaa attaatcccg caacataaca ccagtaaaat caataatttt
    17461 ctctaagtca cttattcctc aga
//
LOCUS       DAJVUP010000085        17201 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.085, whole genome shotgun sequence.
ACCESSION   DAJVUP010000085 DAJVUP010000000
VERSION     DAJVUP010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17201)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17201)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17201
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.085"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..178
                     /locus_tag="OQQ75_002532"
     CDS             <1..178
                     /locus_tag="OQQ75_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976820.1"
                     /translation="NLEADVTLFCDVLCDTDLQRVFTPDDREQVLAVYGPVHARLLRQ
                     ALELIADAESARKK"
     gene            274..483
                     /locus_tag="OQQ75_002533"
     CDS             274..483
                     /locus_tag="OQQ75_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HCS1976821.1"
                     /translation="MWMEFDRISPLGDERGDIRNAQIVKAVFGAQGMNVALKDVMLCW
                     GEDEDKPEVDPFAALEDALSFAAQS"
     gene            531..791
                     /locus_tag="OQQ75_002534"
     CDS             531..791
                     /locus_tag="OQQ75_002534"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976822.1"
                     /translation="MATLRELIIKIVSFRGTHIDAFFRRASSAAHTNARGLITVDLFC
                     CTEAIARQVPEAGSEVLSSVIASGREVLTRGLIAGDDVLTRE"
     gene            complement(926..2527)
                     /locus_tag="OQQ75_002535"
     CDS             complement(926..2527)
                     /locus_tag="OQQ75_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc49 family transposase"
                     /protein_id="HCS1976823.1"
                     /translation="MNIRIWSGILPCMDISALNTTNDIEKLRAMALAMVQEVMSENAE
                     KERELLEKSRRIQLLEEMLKLVRQQRFGKKCETLAGMQRSLFEEDVDADIAALTAHLD
                     KLLPQSPEEDEKASRSRPIRKPLPVHLPRVEKMIQPDTDHCPECDEPLHYIRDAVSEK
                     LEYIPAHFVVNRYVRPQYSCPCCQKVFSGEMPAHILPKSAVEPSVIAQVIINKYGDHL
                     PLYRQQQVFARSDVGLPVSSMADMVGAAGAALSPLAALLHRELINRPVVHADETTLKI
                     LNTKKGGKSCSGYLWAYVSGERTGPSVVCFDCRTGRSHEYPENWLQGWGGTLVVDGHK
                     AYRTLANKVPEITLAGCWAHARRGFADLYKISKDPRAAIAVKKIAGLYRLEKKISSRP
                     VEKIRQWRQRYARPILEELWSWLEEQEPQCSPGKALHKAIAYALSHRVELSRFLEDGA
                     VPLDNNVCERAIKNVVLGRKSWLFAGSQMAGERAAQIMSLLETAKRNGLEPHAWLTDV
                     LMRLPEWPEERLAELLPLEGFTFSG"
     gene            complement(2534..2926)
                     /gene="tnpB"
                     /locus_tag="OQQ75_002536"
     CDS             complement(2534..2926)
                     /gene="tnpB"
                     /locus_tag="OQQ75_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000950651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1976824.1"
                     /translation="MLSPDNVFIAIKPVDMRRGIDSLTQYIQDELRSTWHEGAAFVFV
                     NKVRSRIKVLRWDKHGVWLCTRRLHKGSFRWPRANDAAWHLTPDEFNWLIAGVDWQQV
                     KGHDLTKWVWQNEPELRPENTKNTLLTQ"
     gene            complement(2913..3242)
                     /locus_tag="OQQ75_002537"
     CDS             complement(2913..3242)
                     /locus_tag="OQQ75_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001325657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HCS1976825.1"
                     /translation="MSKPRWTIEQKRQHVAAWRASGLTRQQYCELNDIPFTSLREWPQ
                     DVAKAERRANEPTVLPVHIAPPLHADVPQPVTNEPVTLFLPGGVRMCCQPSQLTDVFR
                     ALKYAQS"
     gene            3287..6547
                     /locus_tag="OQQ75_002538"
     CDS             3287..6547
                     /locus_tag="OQQ75_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_304285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1976826.1"
                     /translation="MTEDPCEDDFPVTTLKISANSQSFQSEIQRASRMGSEYYRTLQN
                     GGRHAAAAAREQRRALAELNSQLTEIRGSAVGMAGAFAGAFATGHLISLADEWGSVNA
                     RLKQASQSSDEFSSSQKVLMDISQRTGTAFSDNAALFARSAASMREYGYSADDVLKVT
                     EAISTGLKLSGAGVAESGSVITQFSQALAQGVLRGEEFNAVNENGDRVIRALAAGMGV
                     ARKDLKAMADDGKLTADKVVPALISQLGILRDEYAAMPETVSGSITKVENAFMAWVGE
                     VNEACGVTKTLSGVLNGVAGQIDNVATAVGALVAVGVARYFGNMASGAMSATAGLVTA
                     ARNEVALAEAQFRGTQIATARARAAVYRAQQAVAAARGTEMQIAAEARLAATQERLNR
                     NIAARSAAQNALNSTTAVGSRLMSGALGLVGGVPGLVMLGAAAWYTLYQNQEQAWESA
                     RQYALTIDEIAHKTPSMSLPEASDNEGRTRAALTEQNRLIDEQASRVKSLQEKIAGYQ
                     YVLANPGWTTGDGFMINHLTSVKTVTEGLAQATEQLAVEQSRLALMQEKAQSIQDVLA
                     GLEDRRVALIRQQAAEQNKVYQSMLVMNGQHTEFNRLLGLGNELLQQRQGLVNVPLRL
                     PQATLDDKQQSALTKTERELALSRLKGEEKERVRLGYAADDLGFVGDPYQEARQRYIS
                     NALEAWRNNEANKPKSRGGKSETEKAEDSFSRLLKQQKEQLALAGQNTELAKLKYQTA
                     QGELKTLTEMQKQELLRNAALIDQQKIREQLRSREETLKNDNVAARASNEAELLGYGQ
                     GERLRERMRELQQIRDSFRQKDADLQSQYQTGDISEDFYRQALAQNAQYLSERLKEQE
                     AFYAESDVQRADWQKGLQEGFSNWVDNASDYASQAAQLATEGISGMVNNITEMLNGNK
                     VEWRSWASSVLQEISKVLMNAAIVNGIKTAANSMSGAGGFIGSIGSWLGGAVANAKGG
                     VYTSANLSAYSNSIVDTPTYFAFAKGAGLMGEAGPEAIMPLTRAADGSLGVRAVGSMN
                     GSAGLVYSPVYHIAIQNDGTNGQIGPEAAGSLVQLIDQRVQAVMLSMRRDGGMLSG"
     gene            6540..6881
                     /locus_tag="OQQ75_002539"
     CDS             6540..6881
                     /locus_tag="OQQ75_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1976827.1"
                     /translation="MAEIKTLHLVPREGMQVSEKPSVARVRFGDGYEQRRPTGLNARL
                     KTFQAVFRVTDEATRRWLEEFLSWHGGYRAFLWRPPKHNRTVRVVCREWSVTDNARYS
                     DFSCTIEQVVN"
     gene            6881..7579
                     /locus_tag="OQQ75_002540"
     CDS             6881..7579
                     /locus_tag="OQQ75_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1976828.1"
                     /translation="MQDIHEESLSESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNE
                     KGEPVTWQGRKYEAYPIDGSGFEMNGRGSSARPSLTVSNLFGLVTGMAEDLQSLVGAT
                     VVRRRVYARFLDAVNFVAGNPEADPEQELSDRWVVEQMSQLTAMTASFVLATPTETDG
                     ALFPGRIMLANTCMWTYRSDECGYTGGAVADEFDKPTTDIRKDRCSKCMRGCELRRNV
                     GNFGGFLSINKLSQ"
     gene            7590..8333
                     /locus_tag="OQQ75_002541"
     CDS             7590..8333
                     /locus_tag="OQQ75_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1976829.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVISTPEGERYIPCVNISAEPE
                     AYFRIAPEDWLRAEMQGEIVALVHSHPGELPWLSEADRRLQIKSALPWWLVCRGEIHK
                     FRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIDMPDFHREDDWWRNGQNLYLDNMAVT
                     GFYRVPLSSAPPGDILLCCFGASVPNHATIYCGNGELLHHLPEQLSKRERYSEKWQRR
                     THSVWRHRHWHASAFTGICNDLAAASACM"
     gene            8231..8911
                     /locus_tag="OQQ75_002542"
     CDS             8231..8911
                     /locus_tag="OQQ75_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000246273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1976830.1"
                     /translation="MATTNAFCLASPPLARICLHGDLQRFGRRLSLYVNTAAEAIRAL
                     SMQMPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHKQLGEGTVIHIVPRLAGAGKGGL
                     QIVLGAAAIVGSFFTAGASMALWGSALAAGGFSATTMLFSLGASMILGGVAQMLAPKA
                     KTPDYRATDNGRQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGK
                     VVVIGRQG"
     gene            9152..12625
                     /locus_tag="OQQ75_002543"
     CDS             9152..12625
                     /locus_tag="OQQ75_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1976831.1"
                     /translation="MGKGGGRAHTPREAKDNLKSTQMMSVIDAIGEGPIEGPVKGLQS
                     ILVNKTPLTDTDGNPVIHGVTAVWRAGEQEQTPPESFESSGSETVLGVEVTRAKPVTR
                     TITSANIDRLRVTFGVQSLVETTSKGDRNPSSVRLLIQLQRNGNWVTEKDVTINGKTT
                     SQFLASVILDNLPPRPFNIRMVRETADSTTDQLQNRTLWSSYTEIIDVKQCYPNTAIV
                     GMQVDAEQFGGQQMTVNYHIRGRIIQVPSNYDPEKRTYSGIWDGSLKPAYSNNPAWCL
                     WDMLTHPRYGMGKCLGAADVDKWALYAIGQYCDQTVPDGFGGTEPRMTFNAYLAQQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDVVWPYTNSDVVVDDNGVGFRYSFSAL
                     KDRHTAVEVNYTDPQNGWQTSTELVEDPEAILRYGRNLLKMDAFGCTCRGQAHRAGLW
                     VIKTGLLETQTVDFTLGSQGLRHTPGDIIEICDNDYAGTMTGGRVLSIDAATRTLTLD
                     REVTLPETGTSAVNLINGSGKPVSVDITAHPAPDRIQVSTLPDGVETYGVWGLSLPSL
                     RRRLFRCVSVRENTDGTFAITAVQHVPEKEAIVDNGARFEPQSGSLNSVIPPAVQHLT
                     VEVSAADGQYLAQAKWDTPRVVKGVRFSLRLTSGSGEDSRLVTTAITADTEHRFSGLP
                     LGEYTLTVRAINSYGQQGEPATTTFRINAPAKPATIELTPGYFQITAVPRLAVYDPTV
                     QFEFWFSEAKIADTSQVETSARYLGTGSQWSVSGPHIKPGKDFWFYVRSVNLVGKSAF
                     VEASGRASNDAEGYLGLFREKIGKLHLAQGLWELIDNSQLADEMAEMKTTITETRNEI
                     TQTVSKTLEDQSATIQQIQRVQKDTNDDLAALYMLKVQKTKNGIPYVAGIGAGIEDTD
                     GQPLSNILLLADRIAMINPEDGNTTPLFVAQGNQLFMNDVFLKRLFAVSITSSGNPPT
                     FSLTPEGRLTARNADISGNVNANSGTLNNVTINENCRVLGKLSANQIEGDLVKTVGKA
                     FPRDSRAPERWPSGTVTVRIYDDQPFDRQIVIPAVAFSGAKHEREHTDIYSSCRLIVR
                     KNGAEIYNRTALDNTLIYSCVIDMPAGHGHMTLEFSVSAWLVNNWYPTASISDLLVVV
                     MKKATAGISIS"
     gene            12693..13292
                     /locus_tag="OQQ75_002544"
     CDS             12693..13292
                     /locus_tag="OQQ75_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1976832.1"
                     /translation="MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPG
                     SDNLNGINVKYRYEFTDALGLITSFSYANAEDEKKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF"
     gene            13357..14764
                     /locus_tag="OQQ75_002545"
                     /pseudo
     CDS             13357..14764
                     /locus_tag="OQQ75_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422246.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
     gene            14850..15362
                     /locus_tag="OQQ75_002546"
     CDS             14850..15362
                     /locus_tag="OQQ75_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976833.1"
                     /translation="MGVTSGWVGSSAKSETGEQWMGAAGTKLGLSKPFMMSQMVGRTM
                     GCKIATEYYKWKSSDKVDNWGAVGADWPLEEKSKGTITNAASCGSGRLVGAVVTLSHF
                     LTNSTPTAAVYLAGGKAVNITVNVGGATQTMIYQGVVSGFQYYWSGSVSSAFVEAMKK
                     TGVPQDLKIS"
     gene            15438..15650
                     /locus_tag="OQQ75_002547"
     CDS             15438..15650
                     /locus_tag="OQQ75_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001114260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS1976834.1"
                     /translation="MPEKFFRTDADNNDVPMTAASWMALSEATEQAMFAKGVEINTRQ
                     LQMKAEVEALTDLKAIRSYVVGWPAG"
     gene            complement(15792..16116)
                     /locus_tag="OQQ75_002548"
                     /pseudo
     CDS             complement(15792..16116)
                     /locus_tag="OQQ75_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414822.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            complement(16252..16500)
                     /locus_tag="OQQ75_002549"
     CDS             complement(16252..16500)
                     /locus_tag="OQQ75_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1976835.1"
                     /translation="MRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(16855..>17201)
                     /locus_tag="OQQ75_002550"
     CDS             complement(16855..>17201)
                     /locus_tag="OQQ75_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1976836.1"
                     /translation="PAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRR
                     RGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIA
                     RVRSVEEILHAL"
BASE COUNT         4058 a         4155 c         5232 g         3756 t
ORIGIN      
        1 taacttggaa gcggatgtga cgctgttctg cgatgtcctg tgtgatacgg acctgcagcg
       61 ggtgttcact ccggacgacc gtgagcaggt gctggccgtc tatggtccgg tacatgcccg
      121 gttgctgcgt caggcactgg aactgatcgc tgatgcagag tcggccagaa aaaagtagcc
      181 cgcccggaaa ttcgctttct gatgcgactt gcgctccgtc tggggcgcac cttatccgaa
      241 ctgcgccaca gcctgagtgc gagcgaggcg atgatgtgga tggagttcga caggatatcc
      301 ccgctgggtg atgagcgcgg ggatatccgt aatgcacaga tcgtgaaagc ggttttcggg
      361 gcacagggga tgaatgttgc actgaaggac gtcatgctct gctggggcga ggatgaggat
      421 aagccggagg tggatccgtt tgcggcgctg gaagacgcgc tgagctttgc agcacagtca
      481 tgaatgatga gaaccgctga ggcggttttt ttacgcccgg agaaaggtga atggcgacgt
      541 tacgtgaact gattatcaaa attgtaagct tccggggaac tcatattgac gcgtttttca
      601 ggcgcgcgtc atcggcggcg catacgaacg ctcgtggttt gataacggtt gatttatttt
      661 gttgcacaga ggcgatcgcc aggcaggtac cggaggcggg ctctgaagta ctgagtagcg
      721 tgatcgcgtc aggccgcgaa gtactgactc ggggattaat tgcaggtgat gatgtactga
      781 cccgggaatg actccgggct gattcaggtt cttattcgct gtcagcccgc gtggttgctg
      841 gtctggctca tttcctgccg tcaggagttc aactcccgac tgcaggttat ggcccggtgc
      901 acgaacacct gacggcaggt atcactcacc cggagaaggt aaatccctca agaggcagca
      961 actctgccag tcgctcctcc ggccactccg gcagacgcat caggacgtct gtcaaccagg
     1021 catgcggctc cagaccgttg cgtttcgcgg tttccagcaa gctcattatt tgcgcggcgc
     1081 gttctcccgc catctgcgaa ccggcgaaca gccacgattt tctgcccaga accacgtttt
     1141 tgatggcccg ttcacacaca ttattatcca gcggcaccgc accatcttcc aggaagcggc
     1201 tcagttccac gcgatgagac agcgcatagg caatagcttt gtgtaatgcc tttcccggag
     1261 aacattgcgg ttcctgctct tcaagccatg accacagttc ttccagtatc ggacgggcat
     1321 aacgctgtcg ccactggcgg attttttcca cggggcggct actgatcttc ttctcaagac
     1381 ggtacaaccc cgcgattttc ttcacggcta tggcagcccg tggatcttta ctgattttat
     1441 acaggtcggc gaagcccctg cgggcatggg cccagcatcc ggccagcgtg atctccggca
     1501 ctttgtttgc cagagtccgg taagctttat gtccgtcgac aaccagcgtc ccgccccagc
     1561 cctgaagcca gttttcagga tactcatggc tacgtccggt ccggcagtcg aagcacacaa
     1621 ctgacggtcc cgtcctttct ccactgacgt atgcccacag ataaccggag caggatttac
     1681 cgcctttctt cgtgttcagg atcttcaggg tagtctcatc tgcatgcacc accggacggt
     1741 ttatcaactc gcgatggagt aacgccgcca ggggagataa tgcggcaccc gccgcgccaa
     1801 ccatgtcagc catcgaactg acgggcagcc cgacatctga acgggcaaag acctgttgct
     1861 ggcgatacag aggcaggtgg tcaccgtatt tattgatgat cacctgtgcg atgactgatg
     1921 gctcaacggc acttttcggg aggatatgtg ccggcatttc accgctgaac accttctggc
     1981 aacagggaca actgtattgc ggacggacat aacggttcac cacaaagtga gcgggaatat
     2041 actccagctt ttcactcacc gcatcgcgga tatagtgcag cggctcgtca cattcagggc
     2101 aatggtcagt gtccggctgg atcatttttt ccacccgtgg aagatgaacc ggtaagggtt
     2161 tgcgtatcgg gcgtgaacgg gacgcttttt catcttcttc aggggattgc gggagcagtt
     2221 tatccagatg tgcggtaagc gcggcgatat cggcatcaac atcctcttcg aatagggagc
     2281 gttgcatacc agccagcgtt tcacattttt ttccgaagcg ctgttgacga accagtttca
     2341 gcatttcttc cagaagctgg atgcgccggc ttttctccag taattcccgc tctttttcgg
     2401 cattctccga catgacttct tgtaccatgg caagtgccat agcacgcagt ttttcgatgt
     2461 cattcgtggt gttgagagcg gagatatcca tacaggggag tataccactc cagatacgga
     2521 tattcattat ttttcactga gttagcagtg tatttttcgt gttttcaggg cgcagttcag
     2581 gttcattctg ccagacccat ttcgtcaggt catgtccctt aacctgctgc cagtcaacac
     2641 cggcaatcag ccagttaaac tcgtcgggag tgaggtgcca ggcagcgtca tttgcacgtg
     2701 gccagcggaa gctgcctttg tgcagacggc gggtacacaa ccacaccccg tgtttatccc
     2761 accggagaac tttgatacgc gaacggactt tgttaacaaa gacgaaggcg gctccctcat
     2821 gccatgtcga ccggagttca tcctgtatat actgcgtcag tgagtcgatg ccccggcgca
     2881 tgtcaacagg tttaattgcg atgaagacat tatcaggact gagcatattt gagtgccctg
     2941 aagacatcgg taagttgtga cggctgacag cacatccgta ctccaccggg aaggaagagc
     3001 gtgactggct cattcgtgac gggctgtggt acatcagcat gcagtggtgg cgcaatatga
     3061 acgggaagaa cggtcggttc atttgcccgg cgttcagctt ttgcgacatc ctgcggccat
     3121 tcgcgaagtg atgtgaaggg aatatcgttg agttcacagt attgctgacg tgtaagacca
     3181 ctggcgcgcc aggcagcaac gtgctgcctt ttctgttcaa tggtccatcg gggttttgac
     3241 atcgattatc tccggtaagt tggtgaatgg atgtcggtaa tactaactga ccgaagatcc
     3301 ctgtgaagat gacttccccg taacgacact caaaatttcg gcaaattcac agtcattcca
     3361 gtcggagatc cagcgggcgt cccgtatggg cagtgaatat taccggaccc tgcagaatgg
     3421 cggacgtcat gccgctgctg ccgcacggga acagcgccgc gcccttgcag aactgaacag
     3481 tcagttgacg gaaattcgcg gttctgctgt cggaatggct ggcgcatttg ccggtgcctt
     3541 tgccaccgga cacctgattt cgctggccga tgagtggggt tccgtgaatg cccgtctgaa
     3601 acaggcatct cagtcatcgg atgaattctc gtcatcacag aaagtgctga tggatatcag
     3661 tcagcgaaca ggtaccgcgt tttcggataa tgcggccctg tttgcccgtt cggctgcctc
     3721 gatgcgtgaa tatggttaca gtgctgatga tgtgctgaag gtgacggagg ccatttcgac
     3781 aggactgaaa ctgtcagggg ctggagttgc ggaatccggt tcggtgatca cccagttcag
     3841 ccaggcactg gcacagggtg tactgcgtgg cgaagaattt aatgctgtta acgaaaatgg
     3901 cgaccgggtg atccgcgcgc ttgctgcggg gatgggtgtg gcccgtaaag atctgaaggc
     3961 aatggcggat gacggaaaac tgacagcgga taaagtggtc cctgcgttaa tcagccagct
     4021 ggggatatta cgtgatgaat atgcggccat gccggaaacg gtttccggta gtatcacgaa
     4081 ggtggaaaac gcctttatgg cctgggtggg cgaagtgaat gaggcctgcg gggtgacaaa
     4141 aacgctctcc ggcgtgctga acggtgttgc cggacagatt gataatgtgg caacagctgt
     4201 gggggcgctg gttgccgtcg gggttgcccg gtactttggc aatatggcct ccggagcgat
     4261 gtctgccacg gcaggacttg tgacggctgc acgtaatgaa gttgcactgg cggaagcaca
     4321 gttcagggga acgcagattg ccacggcgcg ggcaagggca gccgtgtacc gtgctcagca
     4381 ggctgtggcg gcagcccgcg ggacggagat gcagattgct gcagaggccc gtctggcggc
     4441 cacacaggaa cgcctgaaca gaaatattgc tgccagaagc gccgcccaga atgcgctgaa
     4501 cagtacaacg gcggtgggct cacgtctgat gagcggtgcg ctggggctgg ttggtggcgt
     4561 acccggactg gtgatgctgg gggctgcagc atggtacacg ctgtaccaga atcaggagca
     4621 ggcctgggag tctgcacgcc agtatgcact gacgatagat gaaatcgcgc ataaaacgcc
     4681 gtcaatgtct ttgcctgaag cctcagataa tgaaggacga acacgggcgg cgctgacaga
     4741 gcagaaccgg ctgattgatg aacaggctag tcgggtgaaa tccctgcagg aaaaaatcgc
     4801 aggatatcag tatgttctgg cgaacccggg ctggacgacc ggtgacggat tcatgataaa
     4861 ccatctgacc tcggtgaaga ccgtaacgga agggcttgct caggcaacag agcagcttgc
     4921 cgttgagcag tcccgtctgg cactgatgca ggaaaaagcg cagtccattc aggatgtgct
     4981 tgccgggctg gaagaccgtc gtgtggcgtt aattcgtcag caggcggcag agcagaataa
     5041 ggtgtaccag tccatgctgg ttatgaacgg tcagcatacg gaattcaacc gtctgctggg
     5101 gctgggtaat gaactgcttc agcagcggca gggactggtg aatgtgccgt tacggctgcc
     5161 acaggccact ctggatgata aacagcagag tgccctgaca aaaacagagc gtgagctggc
     5221 cctgtccaga ctgaaagggg aagaaaaaga gcgtgtccga ctggggtatg cggcggatga
     5281 cctcggtttt gtgggtgatc cgtatcagga ggcgagacaa cgttatatca gtaatgccct
     5341 ggaagcctgg cgcaataacg aggcgaataa acccaaatcc cggggtggaa aatcagagac
     5401 ggaaaaagcg gaagacagtt tttcccggct gctgaagcag cagaaagagc aactggcact
     5461 ggcggggcag aatacagagc tggcgaagct gaaataccag actgcgcagg gcgaactgaa
     5521 aaccctgacg gagatgcaga agcaggaact gctgcgcaat gcggccctga ttgaccagca
     5581 aaaaatccgg gagcagttgc ggtcccggga agagaccctg aagaatgata atgtggctgc
     5641 tcgtgcatca aatgaagcgg aactgctggg gtacgggcag ggagagcggc tccgtgaacg
     5701 catgcgggag ttgcagcaga tccgcgacag tttccgccag aaggatgcgg accttcagtc
     5761 tcagtatcag accggggata tcagtgagga tttttacaga caggctctgg cacagaacgc
     5821 gcagtatctg agtgaacgtc tgaaagagca ggaagccttt tatgccgaat cggatgtgca
     5881 gcgtgcggac tggcagaaag ggctgcagga gggattcagt aactgggtgg ataatgcgtc
     5941 cgattacgcc tcacaggcag cacagcttgc gacggagggt atctcaggga tggtgaataa
     6001 catcacggag atgctgaacg gaaataaagt ggaatggcgc agctgggcct catcagtgct
     6061 gcaggaaata tcaaaagttc ttatgaatgc cgcgattgtc aacgggatca agacggcggc
     6121 aaacagtatg tccggagcgg gaggatttat cggcagtatt ggtagctggc tgggcggtgc
     6181 ggtggccaat gcaaaaggcg gtgtgtatac ctcggcaaac ctgagtgcgt acagcaacag
     6241 tattgtggat acgcccacgt actttgcctt tgcaaaaggg gcgggactga tgggggaggc
     6301 cggtcctgaa gccattatgc ccctgacccg ggcggcggat ggctcgctgg gtgtgcgagc
     6361 ggtgggcagt atgaacggca gtgcaggtct ggtgtattcc ccggtctacc atatcgccat
     6421 tcagaatgac gggactaatg gccagatagg gccggaagct gcgggcagcc ttgtgcaact
     6481 gattgaccag cgggtgcagg cggtgatgct gtccatgcga cgtgacggag gaatgctgag
     6541 tggctgagat aaaaacgctg catctggtcc cgcgtgaagg gatgcaggtg agtgagaaac
     6601 cgtcggtggc gagggtacgg tttggtgacg gttatgaaca gcgccgcccg acgggactta
     6661 atgcccgact gaagacgttt caggcggtgt tccgggtgac ggatgaggcg acccggcgat
     6721 ggctggaaga gtttttatcg tggcatggtg gttaccgtgc ctttttgtgg cgaccgccga
     6781 aacataaccg gacggtgagg gtggtatgcc gggagtggag cgtcacagat aacgccaggt
     6841 acagtgattt cagttgtacg attgagcagg tggtgaactg atgcaggata ttcacgaaga
     6901 aagtctgagc gagtcggtta aatcagagca gtcaccgcgg gtggtactct gggaaattga
     6961 cctgacggtg cagggtggtg agcggtattt tttctgtaat gagctgaatg aaaaagggga
     7021 gccggtcacc tggcaggggc gtaagtatga ggcatacccg attgacggca gcggctttga
     7081 gatgaacggc cggggcagca gtgccagacc gtcgctgacg gtgtccaatc tgttcggtct
     7141 ggtcaccggg atggcggaag acctgcagag tctggtgggg gccacggtgg tccgccgccg
     7201 ggtgtatgcc cgttttctgg atgcggtgaa tttcgttgcg ggcaatccgg aggcggaccc
     7261 ggagcaggag ctgagtgacc gctgggtggt ggagcagatg tcgcagctga cagccatgac
     7321 ggcctcgttt gtgctggcta caccgaccga gacggacggg gcgctgtttc ccggtcgtat
     7381 catgctggcg aacacctgta tgtggaccta ccgctctgat gagtgtggtt acacgggcgg
     7441 ggctgtggcg gatgagttcg ataaacccac cacggatatc cgtaaggaca gatgcagcaa
     7501 gtgcatgcgc gggtgtgaac tgcgcaggaa tgtcggcaat tttggcggtt tcctttccat
     7561 taataaactt tcgcagtaaa tcccgattta tgacacagac tgaatcagcg attctggcgc
     7621 atgcccggcg gtgtgcgcct gcggagtcgt gcggcttcgt gataagcacg ccggaggggg
     7681 agcggtatat cccttgtgtg aatatttctg cagagccgga ggcgtatttt cgtatcgcac
     7741 cggaagactg gctgcgggca gagatgcagg gggagattgt ggcactggtc cacagtcatc
     7801 ccggtgagct gccctggctg agcgaggctg accggcggct gcagataaaa agcgcactgc
     7861 cctggtggct ggtctgccgg ggggaaattc ataaattccg ctgtgtgcca catctgacag
     7921 gacggcgctt tgagcacggg gtgacggact gttacacgct gttccgggat gcataccatc
     7981 tggcgggaat tgatatgccg gattttcatc gcgaggatga ctggtggcgc aacggccaga
     8041 acctgtacct ggacaatatg gcggtcaccg gcttttaccg ggtgcccctg tcctctgcac
     8101 cgccgggcga tattctgctg tgctgctttg gtgcttcggt accgaaccat gccaccattt
     8161 actgcggcaa cggtgagctg cttcaccatc tgcctgaaca actgagtaaa cgggagaggt
     8221 attccgaaaa atggcaacga cgaacgcatt ctgtctggcg tcaccgccac tggcacgcat
     8281 ctgccttcac ggggatttgc aacgatttgg ccgccgcctc agcctgtatg tgaacacggc
     8341 agcggaagcc attcgcgccc tgtcgatgca gatgccgggc tttcgccgtc agatgaacga
     8401 aggctggtac cagatacgta ttgccggtga tgacacggca ccggaggcgg tgtatgcccg
     8461 tcttcacaaa cagctgggtg agggaacggt catccacatt gtgccgcgac tggccggggc
     8521 cggaaagggt ggactgcaga ttgtgttggg ggcggcagcc atcgtgggct ctttcttcac
     8581 tgccggggca tcaatggcgt tatggggttc agccctggca gccggtggtt tttctgccac
     8641 cacgatgctg ttttcacttg gagccagcat gattctgggc ggtgtggccc agatgctggc
     8701 cccgaaggca aaaacaccgg attaccgcgc aacggataac ggcagacaga acacgtactt
     8761 ttcctcgctg gataacatga ttgcccaggg gaacccgatg ccggtgcctt acggggaaat
     8821 gctggttggc tcccgccgta tatcccagga catcagcacc cgtgatgaag gcgggggcgg
     8881 aaaggtcgtg gttatcgggc gacagggata aaacataaaa aaatcccgca gtgatcgcgg
     8941 agctgcgggg acagacaaat gaagatcaat gtgaaggagt tgtttttgtt actcgggcaa
     9001 aaaaacacta acgcagcgaa attataagcg ccacagtcag tgtgtgaaaa tgtgaagata
     9061 ttcagaaatt ttattccgtc atgacgcagg cacccggtga ggtgcctgtt gtttttgtga
     9121 gtgaacaatt atcacggtaa gaggtgatgt aatgggcaaa ggtggcggca gggcgcacac
     9181 accgcgtgag gcgaaagaca atctcaaatc cacgcagatg atgagcgtga ttgatgcgat
     9241 tggtgaggga ccgatagaag gcccggtgaa aggcctgcag agtattctgg tgaacaaaac
     9301 cccgctgacg gacacggacg gtaatcccgt gatacacggt gtgaccgcgg tctggcgtgc
     9361 cggggagcag gagcagacac caccggaaag ctttgagtcc tccggctctg aaactgtact
     9421 gggtgtcgaa gtgaccaggg caaaaccggt aacacgcacc attacgtcag cgaacattga
     9481 ccgcctgcgg gtgaccttcg gggtgcagtc actggtggag accacgtcaa agggtgaccg
     9541 taatccgtcc tctgtccgtc tgctgattca gttacagcgt aacggtaact gggtgacaga
     9601 aaaggatgtc accattaacg gcaagaccac ctcacagttc cttgcgtcgg tgattctgga
     9661 taatctgcct ccccgcccct ttaacatccg gatggtcagg gagacggcgg acagcaccac
     9721 ggaccagctg cagaacagaa cgctgtggtc gtcatacacc gaaatcatcg atgtgaaaca
     9781 gtgctacccg aacacggcca ttgtggggat gcaggtggat gcggagcagt ttggtggtca
     9841 gcagatgacg gtgaactacc atatccgcgg tcgcatcatc caggtgccgt caaactatga
     9901 cccggaaaaa cgcacgtaca gtggtatctg ggacggcagt ctgaaaccgg catacagcaa
     9961 caacccggcc tggtgcctgt gggacatgct gactcacccg cgctacggca tgggaaaatg
    10021 tctgggggcg gcggatgtgg acaagtgggc gctgtatgcc atcgggcagt actgcgacca
    10081 gacggtcccg gatggtttcg gggggaccga gccgcggatg acctttaatg cgtacctggc
    10141 acaacagcgt aaggcgtggg acgttctcag tgatttctgc tctgcgatgc gctgtatgcc
    10201 ggtatggaac ggtcagacgc tgacgttcgt tcaggaccgc ccgtcggatg tggtgtggcc
    10261 gtacaccaac agcgatgtgg tggtggatga taacggcgtg ggattccgct acagcttcag
    10321 tgccctgaag gaccggcaca cggcggtgga ggtgaattac accgacccgc agaacggctg
    10381 gcagacctcc acggaactgg tggaagaccc ggaagccata ctgcgctacg gacgcaacct
    10441 gctgaagatg gatgcgtttg gctgtacctg ccgcggtcag gctcaccgtg caggtctgtg
    10501 ggtgataaag accggactgc tggaaacgca gacggtggac ttcacgctcg ggtcacaggg
    10561 gctgcgtcac acaccgggtg acattattga aatctgtgat aacgactatg ctgggactat
    10621 gaccggcgga cgtgtcctgt ccattgatgc tgccacccgc accctgacgc tggaccgtga
    10681 ggttaccctg ccggagacag gtacatcggc ggtgaacctg attaacggca gtggtaagcc
    10741 ggtgagtgtg gacatcaccg cacaccccgc gccggaccgg atacaggtca gtaccctgcc
    10801 tgatggtgtg gagacatacg gggtgtgggg actctccctg ccgtcactgc gccgtcgcct
    10861 gttccgctgt gtctccgtcc gggaaaacac ggatggcacc tttgccatca cggcggtgca
    10921 gcacgtaccg gaaaaagaag ccatcgtgga taacggtgcc cgctttgagc cgcagtcagg
    10981 ctccctgaac agcgtcatcc caccggcagt gcagcacctg acggtggagg tgagcgcagc
    11041 tgacggccag tatctggcac aggcgaaatg ggacacgccg cgggtggtga agggggtgcg
    11101 cttcagtctg cgactgacca gcggaagcgg agaagacagc cgtctggtga ccaccgctat
    11161 cactgcggat acagagcatc gtttcagtgg tctgccgctc ggggaataca ccctgacagt
    11221 cagggcaatt aacagttatg gccagcaggg cgaaccggcc accaccacct tccggattaa
    11281 cgcgccagca aaacccgcca ccattgaact gacgccgggg tattttcaga taacagcggt
    11341 accgcgtctt gcggtgtatg acccgacggt acagtttgag ttctggtttt cggaggcaaa
    11401 aatcgcagac acatctcagg tggaaacctc tgcccgttat ctggggaccg gcagtcagtg
    11461 gagtgtatcc ggcccgcaca ttaagcccgg gaaggatttc tggttttacg tgcgcagcgt
    11521 caacctggtg gggaaatctg cttttgtgga ggccagtgga cgggccagca atgatgcaga
    11581 agggtatctg gggctgtttc gggaaaaaat aggaaaactg catctggctc aggggctgtg
    11641 ggagctgata gacaacagcc agcttgcgga tgagatggcg gagatgaaga ccaccatcac
    11701 cgaaacccgc aatgaaatca cacagacggt cagtaaaacg ctggaggacc agagcgccac
    11761 catacagcag atacagcgcg tgcagaagga cacaaatgat gaccttgctg cactttacat
    11821 gctgaaggta cagaaaacaa aaaatggcat accctatgtt gccggtattg gagcggggat
    11881 tgaggatact gatggccagc ccctgagcaa catactgctg ctggctgacc gtattgcgat
    11941 gattaacccg gaggacggca acaccacgcc gttatttgtg gcgcagggga atcagttgtt
    12001 catgaacgat gtgttcctga agcggctgtt tgcggtgagt atcacctcgt ccggcaatcc
    12061 cccgacgttt tccctgacgc cggagggcag gctgaccgca agaaatgctg atatcagcgg
    12121 taacgtgaat gcgaactccg ggacgctcaa caacgtcacg attaacgaga actgccgggt
    12181 tctgggaaaa ctgtccgcga accagattga aggcgatctc gttaaaacag tgggtaaggc
    12241 ttttccgcgg gactcccggg caccggagcg gtggccatca gggaccgtta ccgtcaggat
    12301 ttatgacgat cagccttttg accggcaaat tgttattccg gcggtggcat tcagcggcgc
    12361 taagcatgag agagagcata ctgatattta ctcctcatgc cgtctgatag tgcggaaaaa
    12421 cggtgctgaa atttataacc gtaccgcgct ggataatacg ctgatttaca gttgcgttat
    12481 tgatatgcct gccggtcacg gtcacatgac gctggagttt tcggtatcag catggctggt
    12541 gaataactgg tatcccacag caagtatcag cgatttgctg gttgtggtga tgaagaaagc
    12601 caccgcaggc atcagtatca gctgaatttt ataacccata tacgggcgcc agaaatggcg
    12661 ccttttttat tgcagaaaag cgagaggtaa ttatgcgtaa agtttgtgca gccattttgt
    12721 ccgcagccat ctgtctggct gtatccggtg cgcctgcatg ggcgtctgaa catcagtcca
    12781 cactgagcgc ggggtatctt catgcccgta cgaacgctcc cggcagcgat aatctgaacg
    12841 ggattaacgt gaaataccgt tatgagttta cggacgcgct ggggctgatt acgtccttca
    12901 gttatgccaa tgctgaagat gagaaaaaaa cgcactacag cgatacccgc tggcatgagg
    12961 attccgttcg taaccgctgg ttcagcgtaa tggcggggcc gtctgtgcgc gtgaatgaat
    13021 ggttcagcgc gtatgcgatg gcgggtgtgg cttacagccg tgtgtcgact ttctccgggg
    13081 attatctccg cgtaactgac aacaagggga aaacgcacga cgtgctgacc ggaagtgatg
    13141 acggtcgcca cagcaacacg tctctggcgt ggggggctgg cgtgcagttt aacccgaccg
    13201 aatccgtggc cattgatatt gcttatgaag gttccggcag tggcgactgg cgcactgacg
    13261 gtttcatcgt gggtgtcggc tataaattct gattagccag gtaacacagt gtcatgacag
    13321 cccgccggtt caggcgggct tttttgtggg gtgaatatga cagtaaagat ttctggtgta
    13381 ctgaaagacg gcacaggaaa accggtacag aactgcacaa tccagctgaa agcaaaacgt
    13441 aacagtacca cggtggtggt gaacacgctg gcctcagaaa atccggatga agccgggcgt
    13501 tacagtatgg acgttgagta tggtcagtac agcgttattc tgttggtgga gggattcccg
    13561 ccgtcacatg ccgggactat caccgtgtat gaagattctc aacccggtac gctgaatgat
    13621 tttctcggtg ccatgactga ggatgatgcc cgtccggagg cactgcgtag ctttgaactg
    13681 atggtggaag aggtggtgcg taacgcagag gaggcgaaga agaatgccgg agaggcggag
    13741 acgtcagcga ggaatgccgg catatcagcc agtcaggcag aagagagcgc tgcaaatgct
    13801 gacacttcag caggggatgc atcggagtca gcccggcagg cggcagaaag tgcagcctca
    13861 gcaaagcagt cagaggaggc gtcctcgtcc tcggcctctg cggccgctca aaaagccagt
    13921 gagtcattac aaagtgcaac agatgctgag ttgtcaaaaa agacggcaga aagtgcagcc
    13981 ggtaatgcag tcagggatgc aacgaccgca acagaaaaag cccgggagtc agcagaaagc
    14041 gcacagtcag cggaacaaag caggatagcg gcggaagagg ccgtaaaccg aatccccacc
    14101 gtggtgggac ctcccgggcc aaagggggaa ccggggcccg cgggtcctca ggggccgaag
    14161 ggagataaag gagagcgtgg cgacaccggc ccggcagggg ccaaaaggtg acaaaggcga
    14221 tccgggagtg gctggaccag caggtccggc aggtgcgccg gggccgaaag gcgataaagg
    14281 tgatccggga gtagcaggtc cagcaggtcc ggcggggcca cagggaccga agggagacac
    14341 aggagccccc gggcaaggaa cagaactgct tactactgcc aatacatgga ctcaggcaca
    14401 aacttttaat ggtggtatta atggcaattt gacggtgacc ggaaacggct catttaacga
    14461 tattcagatc cgttcggata aacgcaacaa gcgaaatctg gtaaaactgg ataatgcgtt
    14521 agatcgtctg gaggcactta ctggttatct ttacgagata cagtactctg ccgacggttg
    14581 gcaaacgtcg gttggtttaa ttgctcagga tgcacaaaaa gcattgcctg aactggtaac
    14641 tgaagacgca gacgttatat ctggtgaaaa acgtctgcgt cttaactaca acggcataat
    14701 tgcattgtta gtcgagggct ttaaaacact tcgtcatgag attaaagaac tccgggagaa
    14761 gtaaacgaca gctgttgtag tttctggttt ctactgaatt taaattgtgg ggtgacactc
    14821 accccacgca ttcagaaggg ggagatgaga tgggggtaac atcgggatgg gtaggctctt
    14881 cggctaagag cgaaacaggt gagcagtgga tgggagccgc cggaaccaaa ctgggactga
    14941 gtaaaccttt tatgatgagc caaatggttg ggcgaactat gggctgtaaa attgcaactg
    15001 agtactataa atggaaatcc tctgacaagg ttgataactg gggcgcagtt ggcgctgact
    15061 ggcctttaga agaaaaaagt aaaggtacaa ttacaaacgc cgcaagctgc ggatcaggga
    15121 ggctggtagg ggctgtcgtt acactttctc actttttgac gaactctaca ccgacagctg
    15181 ctgtttattt agccggtggt aaagcagtta acatcaccgt aaacgtaggt ggtgctacac
    15241 aaaccatgat ttatcagggc gttgttagtg ggttccagta ttactggtca ggttctgtta
    15301 gttccgcttt cgtggaggca atgaaaaaga cgggagtacc ccaggatcta aaaattagtt
    15361 aaatggtaaa taaataattt taaaaacttc acgttctaca taccggagac gccggatata
    15421 taggatattg ttttaagttg ccagagaaat ttttccggac ggatgctgat aataatgatg
    15481 tgccaatgac ggcagcatca tggatggcac tgagtgaagc gacagagcag gcgatgtttg
    15541 cgaagggagt ggagattaat acacggcagt tgcagatgaa agccgaggtt gaggcgctga
    15601 cagacctgaa ggcgatccgc agttatgttg tcggatggcc tgctggctga ataaaaaaac
    15661 gggaccacga ccagtcccgg aaccatgagt tttagggtat tagtttgtta tcatagttag
    15721 cgtgctaagt atgccatgtc aggttgatta gtgaagtgat gttgttcgca tttttgcacg
    15781 gcggagaata ttcagatttt tggaaatcca tatttttccc gtgcgcgatt acatgcttca
    15841 tttacgatgc tattttcgcc ggacattgcg aattccctgc atgtggacgg tttttgtaaa
    15901 cagagcaata tgcgttttct ccgggggggc cggcaagagc gccacatcgg ggatttttct
    15961 gattggtgcc gcgcatacag cgatgaaaag gagatatttg ctcagtgaga ctgaccgaaa
    16021 cctttccgcc agcatcgtca gcttctgccc agtaaaaaga gacgcggaaa atgcacaaca
    16081 ggcaccacac gtcatgcatg gattcagatt gctcataatt caccagtaca gctataaatc
    16141 gtaaagagaa cagcggtaca tcgtatgtaa gaacgtaccg cggctggctg gtgaacttcc
    16201 gatagtgcga gtattgaatg atttccagcc gttaccgatt ttacgtgcta attagtgaac
    16261 aaaccactcg tcagcagact cccaggtatc tttcagagtt tcctgaacaa aagttttagc
    16321 tgaatcttta tcggcggtgc gcgtaacaga aaggccatcg ttgctggtag cttttacgat
    16381 cacctctaca tcgtcataac gtttactgat gcgtcgggtt aattcttcct ttaacgcatc
    16441 cacagcaccg gttggcattt tagtcatttt ttctttggct atgcagattt caatacgcat
    16501 aaaagtccct ctacactgtg tttgtataca gtatcatttt taactgtatg gataaacagt
    16561 attaagggtg aaggaaagtg attttttggg gcatgcatgg ggcaaaaata tttgttgtgg
    16621 ggcattttgg ggcatgattg ggacactttg ttacatatga actttgccga tttttatatg
    16681 acatggaaat acaacgcttt gattcttcta aataaaaaac atgctcttgg gcgttcttta
    16741 gtgattttta aaaattccgt atcacgcagt taaagtggcg ggcatactct tcaaggctgg
    16801 tgatccccaa ccgcacccat ttaggatgcg accattgcgg tagaccgatg taaatcataa
    16861 cgcgtgaagg atctcttcca cgctacgcac acgggcgatg cgcgggtaga tatgattaat
    16921 gctgttattg tgttgctcgg cgctggcggc actacaggcg tcttcggcaa tcaccagatt
    16981 aaagccaagt tcccaggcat tgcgggcggt ggattcaaca ccgatattgg tcgagatccc
    17041 acataacact attgtatcga tacctcggcg gcgcagttgc aactccagat ccgtaccgta
    17101 aaacgcaccc cactgacgtt tgatgatttc gatatcactg tcagttgcac ctaatgcagc
    17161 tggatgttgc caccagtttt cgggcaacac tttagcgggg g
//
LOCUS       DAJVUP010000086        16877 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.086, whole genome shotgun sequence.
ACCESSION   DAJVUP010000086 DAJVUP010000000
VERSION     DAJVUP010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16877
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.086"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            191..2038
                     /gene="ldtD"
                     /locus_tag="OQQ75_002551"
     CDS             191..2038
                     /gene="ldtD"
                     /locus_tag="OQQ75_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1976837.1"
                     /translation="MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV
                     SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD
                     MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY
                     LHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA
                     AMHESLLALLSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGD
                     DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL
                     GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNG
                     NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH
                     GYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL
                     HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI
                     RQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR"
     gene            2219..2767
                     /locus_tag="OQQ75_002552"
     CDS             2219..2767
                     /locus_tag="OQQ75_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HCS1976838.1"
                     /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN
                     LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR
                     KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
                     GGVGYYPRSNFVHIDTGPARHW"
     gene            2794..3441
                     /gene="gloC"
                     /locus_tag="OQQ75_002553"
     CDS             2794..3441
                     /gene="gloC"
                     /locus_tag="OQQ75_002553"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003035823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase GloC"
                     /protein_id="HCS1976839.1"
                     /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDD
                     SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEEC
                     QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR
                     SDFPRGDHNQLISSIKDKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW"
     gene            complement(3663..4853)
                     /gene="aspC"
                     /locus_tag="OQQ75_002554"
     CDS             complement(3663..4853)
                     /gene="aspC"
                     /locus_tag="OQQ75_002554"
                     /EC_number="2.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009653304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate transaminase"
                     /protein_id="HCS1976840.1"
                     /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP
                     VLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARMAQTPG
                     GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
                     ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA
                     RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK
                     AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA
                     NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI
                     VAVL"
     gene            complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="OQQ75_002555"
     CDS             complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="OQQ75_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpF"
                     /protein_id="HCS1976841.1"
                     /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHY
                     FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK
                     TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT
                     YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR
                     TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT
                     QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD
                     YIINQIDSDNKLGVGSDDTVAVGIVYQF"
     gene            complement(6728..8128)
                     /gene="asnS"
                     /locus_tag="OQQ75_002556"
     CDS             complement(6728..8128)
                     /gene="asnS"
                     /locus_tag="OQQ75_002556"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HCS1976842.1"
                     /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG
                     SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW
                     VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV
                     STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET
                     YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA
                     VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG
                     VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN
                     VRDVIPFPRTPRNASF"
     gene            complement(8297..9499)
                     /gene="pncB"
                     /locus_tag="OQQ75_002557"
     CDS             complement(8297..9499)
                     /gene="pncB"
                     /locus_tag="OQQ75_002557"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706850.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HCS1976843.1"
                     /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD
                     DLLGIYADAIREQIQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN
                     DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL
                     TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ
                     AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR
                     YQGLRHDSGDPVEWGEKAIAHYKKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL
                     SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD
                     LPHIKKAS"
     gene            9765..12377
                     /gene="pepN"
                     /locus_tag="OQQ75_002558"
     CDS             9765..12377
                     /gene="pepN"
                     /locus_tag="OQQ75_002558"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HCS1976844.1"
                     /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR
                     HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPEHFTLKIVNEISPAA
                     NTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKTKYPFLLSNGN
                     RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG
                     NLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV
                     LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL
                     GSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIH
                     TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV
                     KDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVISLQKGGHPVNS
                     VLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD
                     AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNE
                     MAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRN
                     ACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH
                     QDGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFH
                     AEDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLEN
                     LSGDLYEKITKALA"
     gene            complement(12420..13171)
                     /gene="ssuB"
                     /locus_tag="OQQ75_002559"
                     /pseudo
     CDS             complement(12420..13171)
                     /gene="ssuB"
                     /locus_tag="OQQ75_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309043.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonates ABC transporter ATP-binding
                     protein"
     gene            complement(13168..13905)
                     /gene="ssuC"
                     /locus_tag="OQQ75_002560"
                     /pseudo
     CDS             complement(13168..13905)
                     /gene="ssuC"
                     /locus_tag="OQQ75_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001714028.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
     gene            complement(13970..15115)
                     /gene="ssuD"
                     /locus_tag="OQQ75_002561"
                     /pseudo
     CDS             complement(13970..15115)
                     /gene="ssuD"
                     /locus_tag="OQQ75_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706856.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent alkanesulfonate monooxygenase"
     gene            complement(15112..16071)
                     /gene="ssuA"
                     /locus_tag="OQQ75_002562"
     CDS             complement(15112..16071)
                     /gene="ssuA"
                     /locus_tag="OQQ75_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     substrate-binding protein SsuA"
                     /protein_id="HCS1976845.1"
                     /translation="MRNIIKLALVGLLSVSTIAVAAESSPEALCIGYQKGSIGMVLAK
                     SHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVG
                     VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
                     TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGMRVLKDGTDLNQTGSFYLAARPY
                     AEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKP
                     VNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL"
     gene            complement(16064..16639)
                     /gene="ssuE"
                     /locus_tag="OQQ75_002563"
     CDS             complement(16064..16639)
                     /gene="ssuE"
                     /locus_tag="OQQ75_002563"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HCS1976846.1"
                     /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFVP
                     EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV
                     LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTR
                     LDTALETFWQALHRRDVQVPDLLSLRGNAHA"
BASE COUNT         4235 a         4353 c         4292 g         3997 t
ORIGIN      
        1 taacggcgcg cttttcttta aacttcttta cattaggtta tgtaaaaacg tatcggcgtt
       61 tatatactga agataagcct gatgagtaac aggcttgctc gtcatacttt cgtgagtatt
      121 ggcgttgtac aggcaagtcg taaaataaca gcctggctat tcagagtatg ataaaaacag
      181 ggggcaaggg atgttgctta atatgatgtg tggtcgtcgg ctgtcggcaa tcagtttgtg
      241 cctggccgta acattcgctc cactgttcaa tgcgcaggcc gatgagcctg aagtaatccc
      301 tggcgacagc ccggtggctg tcagtgaaca gggcgaggca ctgccgcagg cgcaagccac
      361 ggcaataatg gcggggatcc agccattgcc tgaaggtgcg gcagaaaaag cccgcacgca
      421 aatcgaatct caattacccg caggttacaa gccggtttat cttaaccagc ttcaactgtt
      481 gtatgccgca cgcgatatgc aacccatgtg ggaaaaccgt gatgctgtta aagccttcca
      541 gcaacagctg gcagaggtgg cgattgccgg tttccagccg cagtttaata aatgggtaga
      601 gttactgacc gatcctggtg ttaacgggat ggcacgcgac gtagtgctct ctgatgcgat
      661 gatgggctat ctccatttca ttgcaaatat tccggtcaaa ggcactcgct ggctatatag
      721 cagtaaacct tatgcacttg caacgccgcc gctctcggtg attaaccaat ggcagctggc
      781 gctggataaa ggtcaattgc ctacgtttgt tgcaggactg gcaccgcagc atccgcaata
      841 tgcggcgatg catgaatcgt tactggcctt actcagtgac accaaaccgt ggccccaact
      901 gaccggcaaa gcaacgttgc gcccagggca gtggagtaac gacgtaccgg cgttgcgcga
      961 aatattgcaa cgcacaggca tgttggacgg ggggccgaaa attactctac ctggcgatga
     1021 cacgccaact gacgcggtag tcagcccatc cgctgttact gttgaaacag cagaaactaa
     1081 gccgatggac aagcaaacga cgtctcgtag taaacctgcg cctgccgttc gcgccgccta
     1141 cgataatgaa ctggtggaag ccgttaaacg ttttcaggca tggcaaggat tgggggcaga
     1201 tggtgctatt ggcccggcaa cacgtgactg gttaaacgta acgcccgccc agcgtgctgg
     1261 cgtgttggct ctcaacatcc agcgattgcg cttgctgcca acagagcttt ctaccgggat
     1321 catggttaac attccggcct attcgctggt ctactatcag aacggcaatc aggtgctgga
     1381 ttcgcgagtc attgtcggtc gccccgatcg caaaacgccg atgatgagca gtgcccttaa
     1441 caacgtagtg gtaaacccgc cgtggaacgt acctccaact ctggcacgca aagatattct
     1501 gccaaaagtg cgcaacgatc cgggatatct cgaaagccat ggctatacgg tgatgcgtgg
     1561 ctggaacagc agagaagcga ttgacccatg gcaggttgac tggtctacaa tcacggcctc
     1621 gaatttaccg ttccgcttcc agcaggctcc aggcccacgg aactcgctgg ggcgctataa
     1681 attcaatatg ccgagttcag aggccattta tttgcatgac acgccgaacc acaatctgtt
     1741 caagcgtgat acacgcgcat tgagctcagg ctgtgtacga gtgaataaag cttccgatct
     1801 ggcgaatatg ctgttgcagg atgcaggctg gaatgacaaa cgtatttctg atgcgctgaa
     1861 gcagggtgat acacgttacg tcaatattcg gcagtcgatt ccggtgaatc tctactacct
     1921 gacggccttt gttggtgcag atggtcgtac ccagtatcgt acagatattt acaattatga
     1981 tctgcctgcg cgatccagct cgcaaatcgt atcgaaagcg gaacaattaa tcaggtaaat
     2041 gaagtagttc ggggaaatca gttgtcgtaa taattagcat gattgggggc gattctctgc
     2101 agcccccgtc actgctgggg ttgagtcatc ttgacgtctg ctttacgggc ggttaaggtg
     2161 cctcttgtgc gccagaagtg catataaacg ataacattga cctgtagact tgattatcat
     2221 ggacaaattc gacgctaatc gccgcaaatt gctggcgctt ggtggcgttg cactcggtgc
     2281 cgccatcctg ccgacccctg cgtttgcaac actctctacc ccacgcccgc gcattttgac
     2341 actcaataat cttcataccg gagagtcaat caaagcggag tttttcgatg gcagaggcta
     2401 tattcaggaa gaattggcaa aacttaacca ttttttccgc gattaccgcg cgaacaaaat
     2461 aaagtccatc gacccaggat tattcgacca gttgtatcgc ctgcaagggt tgttaggcac
     2521 gcgcaaaccg gtgcaactca tttccggtta tcgttccatt gataccaaca atgaactacg
     2581 cgcccgcagc cgtggagtag cgaagaaaag ctatcacact aaaggccagg cgatggattt
     2641 ccatattgaa ggtatcgcgt taagcaatat tcgcaaagcc gcgttatcta tgcgcgcagg
     2701 tggtgtagga tattacccac gtagtaactt tgtgcatatt gataccgggc cagcacggca
     2761 ctggtagcaa tcgcttaacg aaacaggggc agtatgaact atcgtattat tccggtcacc
     2821 gcattctccc agaactgttc attaatctgg tgtgaacaaa cccgtctggc cgcactggtc
     2881 gatcctggcg gcgatgcgga aaaaatcaaa caggaagttg atgacagcgg cctgacactg
     2941 atgcagatcc tgctgacgca tggtcatctg gaccacgttg gcgcagcggc ggaactggcg
     3001 caacattacg gcgtgccggt ttttggcccg gaaaaagaag atgagttctg gctgcaaggc
     3061 ttgcctgcgc aaagtcgtat gtttggtctg gaagagtgcc agccgctgac gccagatcgt
     3121 tggctgaacg aaggcgatac catcagcata ggaaatgtga ctttacaggt gttacattgc
     3181 cctgggcata cgccgggtca tgtcgtgttt tttgatgatc gggcaaagct gctgatttct
     3241 ggcgatgtta ttttcaaagg cggagtaggg cgcagtgact tcccgcgtgg cgatcataat
     3301 caactgattt cttcaatcaa agataaattg ctgccactgg gggatgacgt gacatttatt
     3361 ccgggtcacg gaccattatc cacacttggt tatgaacgcc tgcataatcc cttcctgcaa
     3421 gacgaaatgc ccgtctggta aggcacataa aaaagcccgc ttttaatgcg ggcctggatt
     3481 tctggcaaag tgcgctttgt ttatgccgga tgcggcacga gcgccttatc cggcctacaa
     3541 aatcgtgcaa attcaaaata ttgcagggga cgcgtaggcc tgataagcgt agcgcatcag
     3601 gcaatgttgc gtttgtcatc agtctcagcc cgcttttcag cgggcttcat tgtttttaat
     3661 gcttacagca ctgccacaat cgcttcgcac agcggagcca tgttatctgg tgtcatcccg
     3721 gccacattta cgcgaccaga agcaaccgca tatacgccaa actcttcgcg cagacgcagc
     3781 acttgttctt ttgtcaggcc actgaaggag aacatgccgt tctgtttgat gataaagctg
     3841 aagtcgcggt ttgcgccttt ttcctgcagc gtattgacga acaactgacg catacgctga
     3901 atacgctggc gcatatcagt cagctcttgt tcccaaatcg cacgtaacgc atcgttgctc
     3961 aggatggtgg caacaacaga agcgccgtgt gctggtgggt tagagtagtt agcgcgaatc
     4021 gccgctttca tttggctgaa tgcgcgatca acggtttcac tgtcggcagc aaccagagta
     4081 caagcgccaa cacgctcgtt gtacaggcca aagtttttag agtaggaact ggcaacaatc
     4141 agctctttat gcatagccgc gaaagcgcgc agtccttcag catcttcttc cagaccacgg
     4201 gcaaaaccct ggtaagcgaa gtcaaacagc ggtaaccagc ctttctcaac ggagagttgt
     4261 gccagtgtct gccattgttc cagcgtaggg tcgataccgg ttgggttatg gcagcagcca
     4321 tggaacagca ctacgtcgcc agcctgagct tcattcaggc tgttaatcag tgcatcgaag
     4381 tcaagagtgt gattttccgc atcataataa gcgtattcac gaacttccag acctgcagag
     4441 ttaaagacgc tcttatggtt cggccagctt gggttgctca cccacactcg cttaacgctg
     4501 gtattttttg ccaggaaatc ggcagctacg cgtagtgcgc cagtgccccc cggagtctgt
     4561 gccatgcgag cacgtttgtc attgatcagg gcgctacctt taccaaacag cagttcctga
     4621 gtgcagcgac caaattcagg gatgccgtca atgccgaggt aatttttggt ggtttcattt
     4681 tcgagcagat actgttcagc ctttttcacg ctggtcagta ccggggtttt gcccgtctca
     4741 tctttataga caccaatccc gaggttaatt ttgccgggac gttcatcggc acgaaacaga
     4801 tcggccaggc ccagaatcgg gtcggcagga gcggcggtaa tgttctcaaa catgacgagg
     4861 ttccattatg gttacagaag ggaagtccgc tatcagggta acgggagatt tacaaaattc
     4921 caactattac tgatgaaaac gcaggctgtt tttgcaagac gtgagattgc tctggaaggt
     4981 ataaaaaaaa caggaccaaa gtcctgtttt ttcggcattt aacaaagagg tgtgctatta
     5041 gaactggtaa acgataccca cagcaacggt gtcgtctgaa cctacgccca gtttgttatc
     5101 agaatcgatc tggttgatga tgtagtcaac ataggtggac atgtttttgt tgaagtagta
     5161 ggttgcgccc acttcaaagt agttcaccag atcaacatca ccgatacctt ctacgtcttt
     5221 cgctttagat ttggtgtaag cgatggacgg acgcagaccg aaatcgaact ggtattgcgc
     5281 aactaacaga acgtcttgcg ttttgttggc gaagccgctg gtgtttgtaa atttattagt
     5341 gatcggcgta gcgttacggg tttcaccgta gttcgctgcc aggtagatgt tgttcgcgtc
     5401 gtacttcaga ccagtagccc actgttcagc ttttttaccg ttgccaagag gttgagcttc
     5461 ttgcaggttg gtacggtcag ctgcaccata agcaccaacg ataccaaagc cttcgtattc
     5521 gtagctgata gaaccgccaa caccgtcgcc gttagaacgg cgtgcagtgt cacgctcgtt
     5581 tttacccagg tactgaacag cgaagttcag gccatcaacc agaccaaaga agttggagtt
     5641 acgataggta gcaacgccgc caacacgacc aacgaagaag tcatcgctgt atgcagtatc
     5701 accaccaaat tctggcagca tatcggtgta acccagtgca tcataaacca caccgtagtt
     5761 acggccgtaa tcgaaagaac caacgtcagc gtatttaaga cccgcgaatg ccagacgcgt
     5821 tttgttacca gtttgagcgt cagcgccttc agagttgtta ccttggaagt tatattccca
     5881 ctgaccataa ccggtcagat cggaattgat ttgagtttcc cctttaaaac caagacgggc
     5941 ataggtcatg tcgccattgc caccgtaact gttttcaccg ttacccttgg aaaaataatg
     6001 cagaccaaca gctttaccgt acagatctac tttgttgcca tctttgttat agatttctgc
     6061 agcgtttgca gtacctgcta ctaacagagc agggacgatc actgccagaa tattgcgctt
     6121 catcattatt tattaccctc atggtttttt ttatgacacc tgccactgcc gtcaataagt
     6181 tctgtcaata aaaatttacg gaactattga tgagagtttg gtgtctttat gtgtctgcag
     6241 gcatctttcc attcaaacta acgtttcgct accgtgaaag tgctgcaaag ataaagattt
     6301 agtttcaaaa agaaaaaata tgtaaccaaa agtaaaaatt aaggaacttt gtgaacaccg
     6361 tcatatttcc atagaaacgt gatgatattt acagcaattt ttatctattt atatgattta
     6421 cttatattta aattaactaa gcggaaattt tgtttctgat ggaaacttta tcgacctggc
     6481 acaaaatcct ctttcagaca tccagaatgc caaaaaatag tatgaaaatt gtgctatcag
     6541 ctaagaaaaa actaatccgc aataagaata cgggttattt tttgtgcgta aatgttgcaa
     6601 tgtaatattc cgtaacagga tgatcgttat ggcggggttg caaatagatt gcttgactta
     6661 acaaacagat aacttgacag aaaggataaa aaagagccag caggcgctgg ctctttgagg
     6721 aagaaaatca gaagctggcg ttgcgcggag tacgtgggaa cggaatcaca tcacgcacgt
     6781 tttgcacgcc agttacgtaa gcaatcaggc gttcaaaacc aagaccgaaa cctgaatgcg
     6841 gaacagtacc gtagcgacgc agatcgcgat accaccagta atcttcttta ttcaggccca
     6901 tttccagcat acgctcgtcc agaacgtcca gacgttcttc acgctgggag cctccaatga
     6961 tctcaccgat gcccggagcc agaacgtcca tagccgcaac ggttttaccg tcttcgttga
     7021 ggcgcatata gaacgcttta atatctttcg gatagttttt aaccactacc ggtgctttaa
     7081 agtgttcttc cgccagataa cgctcatgct cagaagagag atcgacgccc cagtaaaccg
     7141 ggttttcaaa cttcctgccg cagttttcga gaatggtcac tgcgtcggtg taatccacct
     7201 gcgcgaaatc ggcctcaatg aagcgttcca gacgtgaaac ggcatcttta tctacgcgtt
     7261 cagcgaagaa tttcatgtcg tctgcgcgtt cttcgagaac cgctttgaag acatatttca
     7321 gcatggcttc agccagaccc gcgatatcgt tcaggttagc aaacgccact tccggctcca
     7381 gcatccagaa ttccgccagg tgacggctgg tgttggagtt ttcagcacgg aaagtcgggc
     7441 cgaaggtata aattttggat aatgcgcaag cgtaggtttc gccgttcaac tggccagata
     7501 cggtcaggaa agactcttta ccaaagaagt ctttgtcgaa atccactttg ccctgatcgt
     7561 tacgcggcag gttttccaga tccagcgtag aaacgcggaa catttcgcct gcaccttcgg
     7621 tatcagatgc ggtaatcagt ggcgttgaaa cccagaagaa tccctgctcg ttaaagaagc
     7681 gatgcagcgc ctgcgccagc gtatggcgaa cgcgcgcgac ggcaccaatc aggtttgtgc
     7741 gcggacgcag gtgagcgact tcacgcagat actcaatgct gtggcgtttt gccgccatcg
     7801 ggtaagtgtc tggatcttca acccaaccag caacttcaac tttgctggcc tgaatttcaa
     7861 attgttgccc ctggcccggc gacgccacga ctttacccgt cacaatgacc gagcagccgg
     7921 tggtcagacg caggacgtct tcattgtaat tgggcagaga attattgatg acagcctgta
     7981 caggatcaaa gcaggaaccg tcataaacgg cgaggaagga gatgccagct tttgaatctc
     8041 ggcgggtacg tacccatccg cgtacggtga cttcgctgtc aacggctacg cggccctgga
     8101 gtacgtcggc tacaggcaca acgctcataa tattctctct gttaatagtc ggaaaaaata
     8161 aacacttgtc cacccgtaaa tggggggata cctatgttac ctggcatctg caatcagaca
     8221 agcagaattc gcaaatgcag cgaaagattt cggaattaaa ggtaaaaaaa gggagccgat
     8281 tagctccctg atgatattaa ctggcttttt taatatgcgg aaggtcgaac gctttgcgca
     8341 gcgcccgaac aaacgcttta tcatggcaga tagttttgcc agggctgtca gaaagtttcg
     8401 ccaccggttt accgttacac tctaccaact taatcacaat attcaggggt tttacctggg
     8461 ggatatcgca ggtcaggcga gtcccaatac caaaacttaa ttgcacgcgg gaagagaagt
     8521 ggcggtatag ctcaaccgct ttgcgtaaat ccagattgtc agagaaaacc agcgttttac
     8581 tctgtggatc aattcccagc tttttataat gtgcaatggc tttttcaccc cattcaaccg
     8641 ggtcgccaga gtcatgacgc aggccctgat accgactggc gaactcgaca ccgaaatcac
     8701 gcaggaaagc atccatagtg atgcagtcgg ttaatgcaat gccaagttgg tcgggatatt
     8761 cttccagcca ggcagcaagt gcagctcgct ggctgttggc taggtccggg ctgatttgct
     8821 gatgtgcctg gaaccattcg tgcgcctgtg ttcccatcgg cgtgagggaa agccgacgcg
     8881 ccagatcgta gttgctggtg cccacgaacc aggattcctg ttgcagacgc ttaacgatgg
     8941 tttcttgtac ttcgcgagaa aaacggcgac gggtgccaaa atccatcaga tggaagcgcg
     9001 acatatcaag accggcggtt aacgccgaga agtcgactaa tttgctttcc agcgtgtcga
     9061 gggcttgcgc aacgtcggcc tgcggtgagc gatagcgatg taccatttca ctgataaccg
     9121 ccagcaaagg aacttcccag aggatgactt cacgccacgg accgcttaag cgaatatcca
     9181 gcttgccatt atcgttggac acggtgactt gttccgggtt aaagcggaat tcgcgtaacc
     9241 agttaagata gtcggcctta aagaaaggca gggcagagag ccactgatat tcatcatcct
     9301 gcaggcgcag gtgctgcatc gcctgaatct gttcacgaat agcatcggca taaataccca
     9361 gcagatcgtc acctcggcaa cgaaactccg ccgcgacatg cacatcgtaa tagtgatgaa
     9421 acacggcttg ctgcatatgc aacttataag catctgtatc cagcaacgag tgcagaacag
     9481 gagaagcgaa ttgtgtcata ggtgcgcagt agcatcctcg tacaggagcg tttagtacaa
     9541 taaacatctt caggaactgc tggagtatac cttgtttcgc aatttattga accccgatca
     9601 caccatatgc cacctttctg gtcgatggca ttacgcggtg tatgttataa aaatgtagca
     9661 ataaaggcgt ttgtacctga aaagatgaag attctgcata gcgcgattta cgcaacagga
     9721 atagactgaa caccagactc tataaaagat gctaaaggtt atttatgact caacagccac
     9781 aagccaaata ccgtcacgat tatcgtgcgc cggattacca gattactgat attgacttga
     9841 cctttgacct cgacgcgcaa aagacggtcg ttaccgcggt cagccaggct gtccgtcatg
     9901 gtgcatcaga tgctccgctt cgtctcaacg gcgaagacct caaactggtt tctgttcata
     9961 ttaatgatga gccgtggacc gcctggaaag aagaagaggg cgcactggtc atcagtaatt
    10021 tgccggagca ttttacgctt aagatcgtta atgaaataag cccggcggcg aataccgcgc
    10081 tggaagggct ttatcagtca ggcgatgcgc tttgcaccca gtgtgaagcc gaaggtttcc
    10141 gccatattac gtattatctc gaccgcccgg acgtgctggc gcgttttacc accaaaatta
    10201 ttgccgataa aaccaaatat cccttcctgc tttccaacgg taaccgcgtt gcgcaaggtg
    10261 aactggaaaa cggacgccat tgggtacagt ggcaggaccc gttcccgaaa ccgtgctacc
    10321 tgtttgcgct ggtggcaggc gactttgatg tactgcgcga cacctttacc acgcgttctg
    10381 gtcgcgaagt ggcgctggag ctgtacgtcg atcgcggcaa ccttgatcgc gcgccgtggg
    10441 cgatgacctc gctgaaaaac tcaatgaaat gggatgaaga acgcttcggc ctggagtatg
    10501 acctcgacat ctatatgatc gtcgcggtgg atttcttcaa tatgggcgca atggagaata
    10561 agggtttgaa tatctttaac tccaaatatg tgctggcccg caccgacacc gccactgaca
    10621 aagattacct cgatattgaa cgcgttatcg gccatgaata tttccataac tggaccggta
    10681 accgagtcac ctgccgcgac tggttccagc tcagcctgaa agaaggttta accgtcttcc
    10741 gcgatcagga attcagctct gaccttggtt cccgtgcagt taaccgcatc aataatgtgc
    10801 gcaccatgcg cggattgcag tttgcggaag acgccagccc gatggcgcac ccgatccgcc
    10861 cggacatggt cattgagatg aacaacttct ataccctgac cgtttacgag aagggcgcgg
    10921 aagtgatccg tatgatccac accctgctgg gcgaagaaaa cttccagaaa gggatgcaac
    10981 tctatttcga gcgccatgat ggcagcgcgg caacctgcga cgactttgtg caggcgatgg
    11041 aagatgcgtc gaatgtcgat ctctcccatt tccgccgttg gtacagccag tccggcacgc
    11101 cgattgtgac cgtcaaagac gactacaatc cggaaaccga gcagtacacc ctgaccatca
    11161 gccagcgcac gccagccacg ccggatcagg cagaaaaaca gccgctgcat attccgtttg
    11221 ccatcgaatt gtatgacaac gaaggcaaag tgatctcgtt gcagaaaggc ggtcatccgg
    11281 tgaattccgt gctgaacgtc acccaggcgg aacagacctt tgtttttgat aatgtctact
    11341 tccagccggt gcctgcgctg ctgtgcgaat tctctgcgcc agtgaaactg gaatataagt
    11401 ggagcgatca gcaactgacc ttcctgatgc gtcatgcgcg taatgatttc tcccgctggg
    11461 atgcggcaca aagcctgctg gcaacctaca tcaagctgaa cgtcgcccga catcagcaag
    11521 ggcagccgct gtctctgccg gtacatgtgg ctgacgcttt ccgcgcagtg ctgctcgatg
    11581 agaagattga tccggcgctg gcggcagaaa tcctgacgct gccttctgtc aatgaaatgg
    11641 ctgaactgtt cgatatcatc gacccgattg ctattgccga agtacgcgaa gcactcactc
    11701 gtactctggc gactgaactg gcggatgagc tgctggctat ttacaacgcg aattaccaga
    11761 gcgagtaccg tgttgagcat gaagatattg cgaaacgcac tctgcgtaat gcctgcctgc
    11821 gcttccttgc ttttggtgaa acgcatctgg ctgacgtgct ggtgagcaag cagttccacg
    11881 aagcgaacaa tatgaccgat gcgctggcgg cgctttctgc ggcggttgcc gcacagctgc
    11941 catgccgtga tgcgctgatg caggaatacg acgataagtg gcatcaggac ggtctggtga
    12001 tggataaatg gtttatcctg caagccacca gcccggcggc gaatgtgctg gagacggtgc
    12061 gcggtctgtt gcagcatcgc tcatttacca tgagcaaccc gaaccgtatt cgttcgttga
    12121 ttggcgcgtt tgcgggcagc aatccggcag cgttccatgc cgaagatggg agcggttacc
    12181 agttcctggt ggaaatgctt accgacctca acagccgtaa cccgcaggtg gcttcacgtc
    12241 tgattgaacc gctgattcgc ctgaaacgtt atgatgccaa acgtcaggag aaaatgcgcg
    12301 cggcgctgga acagttgaaa gggctggaaa atctctctgg cgatctgtac gagaagatca
    12361 ccaaagcact ggcttgataa ataaccgaat ggcggcaata gcgccgccat tcggggaatt
    12421 tacccctgtt ttctcaggcg aatttcagat tcaccacgct gcatcaccct ttgcaacact
    12481 tccgattcca gctccgctaa tcgcaccgac cctaatcgac gcggaggggg gatatccact
    12541 gtcaaatcca gaccaatttt tccctcttca attaataaca cccggtcagc cattgctacc
    12601 gcttcgctca catcatgcgt caccaacagt acggtaaagc cgtgctcctg ccaaagtgac
    12661 acaatcaaat cctgcatctc gagtcgcgtt aaggcgtcca gtgccccgag cggttcatca
    12721 agcaacaata aacccggtcg atgaatcaac gctcttgcca gcaccactcg ctgtttctgc
    12781 ccgcctgaaa gtgcggcagg ccattccccg gcgcgattct ccagtcctac cgcagccaac
    12841 gcccgacgcg cggcatcgcg ccactggcct ttaaggccta acccaacgtt atcaatcacc
    12901 gatttccacg gtagcagacg cgcatcctga aacatcattc gcgtgtcttc ctgaatttca
    12961 gccagcggtg tggtgcctgc caacacatcg cctgcggttg gcgtttccag cccggccagc
    13021 aggcgcagca gggtactttt gccaccaccg ccacaaactg acctgtcgga atatgtaaat
    13081 ccagttggtt caggacgata ttttccgcgt aatgtttgct tactgcattg agcaacaatg
    13141 gtgtgccctg gttcagacga gcagtattca taccgtggcc tccttcaaat gataagccgg
    13201 gttccagcgc aaccagaggc gctctaacag ctgcgcgctg acgtcagcaa gtttgccgag
    13261 cagggcgtaa agaataatag cgactaccac cacgtccgtt tgcaaaaact ctcgcgcatt
    13321 catcgccaga taaccaatgc cggaattggc agaaatggtt tcggcaacaa tcagcgtcag
    13381 ccacatcagg cccaacgcaa aacgcacgcc gaccataatt gagggcaggg caccaggcag
    13441 gatcacatgg ataaacagcg gtatgccgga taacccatag ctacgcgcca tctccaccag
    13501 cccgcgatcg atattacgga tgccatgcca ggtgttgata taaatgggaa acagcgtacc
    13561 gagcgccacc agaaagattt ttgcggattc atcaatgcca aaccacaaaa tcaccagcgg
    13621 gatcagcgcc agatgcggca cgttgcgcaa catctgaatt gaggtatcca gcagccgttc
    13681 tccccagcga gatagcccgc taatcagtcc caaaatcaac cccagcgatc cgccaattga
    13741 aaagccaatc agcgcccgct aggaactgat cgccagatgc tgccacagtt cgccgctggc
    13801 ggagagcgtc cagaacgccg tcaccacccc ttccggtgag ggcaaaatac gcgtcgacag
    13861 ccagccaact gaggaggcca gttgccacac cgccacgatg cccaccggta aaaactaggg
    13921 ggcaacgcgc aataaccact tcttcactgg cgttgccatt atttcttcct tagctttgcg
    13981 cgactttacg ggggataaaa tcattcgcca ccgcttcgcc ttgcggattc agcggctgcg
    14041 gctggggaat ttccggaatg gcgacatcca gatgtgggaa cagcaactcg ccgacccgat
    14101 acgcttcttc cagatgcgga tagcccgaaa gcacaaagct gtcgatgcca agcgcggcgt
    14161 attcgttgat tcgcgcagcg accgtaggac catcgcccac cagcgccgtt ccggcaccgc
    14221 cgcgcactaa gccaacgccc gcccataaat tggggctgat ctccagattg tcgcgcttgc
    14281 cgttatgtaa cgccgccatt cgctgttgtc ctacggaatc cgtccgggcg aatgcggcct
    14341 gtgctttggc gatagtttca tcatcaagat gcgagattaa ccgctcggcg gcctgccacg
    14401 cttcgtcgtt agtttcacga acaatcacat gcagacgaat accgaaacga attttgcgtc
    14461 catgcgcggc agctttcgcc cgcacttgtt cgatcttctc ttttactagt tctggcggtt
    14521 cgccccaggt gaggtagaga tcaacttgtt ctgccgccag ctcctgggcg acgtctgacg
    14581 atccgccaaa gtaaagcgga ggataaggct gttgaatcgg cgggaagagc agttttgctc
    14641 cgcgcacatg aatatgttta ccgttgaaat tgacggtttc ccccagcaat aagcgccgcc
    14701 agacctaggt aaattccgcc gaggcttcgt agcgctcgct atgatcaagg aacacgccgt
    14761 cgcctgccag ctcttgtgga tcgctgcctg tgaccagatt aaacaacgca cgaccatttg
    14821 agagacggtc aagcgtggcg gcctggcgag cggcaacggt aggtgaggtt acgctggggc
    14881 gcagggcgac aagaaacttc agccgctgcg tcaccgggat catcgacgcc gccaccagcc
    14941 acgcatcttc acacgatcgc cccgttggga tcagcacacc ggtatagccc agacgatccg
    15001 ccgcttgcgc aatttgttgc agataaccgt gatcaaccgg gcgtgaacct tcttccgttc
    15061 ccagatagtg cccgtcaccg tgggtcggta aaaaccagaa catattcaga ctcataattg
    15121 ttttccttcc agttgagtgg gctgccagat gcgctggcga atatcgactt ttttcggcac
    15181 cagacgattt tcataaaaca gatctgccgt ttgctgctgt aaggcggcaa cctcggcgtt
    15241 aaccggtttg atggtggtag gagggcgatg atctaagtaa gaggcaatca ccggtgccgg
    15301 taagcccatc gtttttgcca gtaaagcgat gctttgctcg cgctggctgc gggttaacgc
    15361 atcggcctca ctaaaggttg ccagtacgcc ctgaataaaa gcgccgtttt tttctgcata
    15421 gggacgagct gccagataaa acgatccagt ttgattgaga tcggtgccgt ctttcagcac
    15481 ccgcatgccg ccctgtaata atgcagcaga gtagtaggga tcccagatag cccaggcgtc
    15541 aacgttacct tgctggaacg cggcgcgggc atcagcgggc gtcaggtaag tgggttggat
    15601 atcggtaaac ttaagtccgg cctgacgcag tgcacgcagt aaaaggttgt gtgaactgga
    15661 acctttctga aaggcaactt tgtgaccttt aagatcggct acggttttga tcgggctgtt
    15721 ttctgccacc agaatcactt cggctttggg cttcggtggc tcgacgccca catataccaa
    15781 atcagccccg gcagcctggg caaagattgg cggaatatcc ccggtactgc cgagatcaat
    15841 actgccaacg tttaaggctt ccaacatttg cggacccgcg gggaactcca cccaggagat
    15901 ttttgattgc ggatagcgtt tttccagtaa ctggtggctt tttgccagta ccataccaat
    15961 actgcctttc tgatagccta tacataacgc ttcaggcgag gattctgcag caaccgcaat
    16021 cgtagagacg ctaagcaatc ccaccagcgc cagtttaatg atgttacgca tgggcattac
    16081 ctcgcagaga cagaaggtca ggaacctgaa catcgcggcg gtgcaatgcc tgccagaaag
    16141 tttctagcgc ggtatcaaga cgggtttgca gatttggcgt gaactggggt ctgtgatggt
    16201 aatcaattac ttgtgagtca tcggcaaaca cgccgtgcag gatctcctga gctttcagtg
    16261 cgcttaaaac tggtttaagg gcataatcga ccgccagcag atgggccacg gtaccgcccg
    16321 tcgccagcgg tagcaccact ttgccttgca aagcgcgctc tggcagcagg tcgagcaggg
    16381 ttttcagcgc gccggaatag gcggctttat acacaggtgt agcgactatc agtccatcag
    16441 cctgttgcag ctgttcggtg aaggtcttga gtgccggact atcgaaacga gcataaagca
    16501 gatcttccgg gacgaagttt tgcagattcc agtgataaac ctctacatcc aggccattta
    16561 gtttttcccg cgcatattcc agcaaggagc tggagcgaga aggaaagcga ggactacccg
    16621 ccagggtgat gacacgcata ctctctcctt ataaccaatt gttctttttt tgttaacatt
    16681 gataacaatt cggtcagtct gtcggagaga caagaaaatg ccaaatataa attttgtgta
    16741 tctttttctg aaaataaact aaagaaaggg ctttatatat cacgcatatt tatttgttgg
    16801 atagtcatta gatgttgaat caatgaatta ctcgttcagt taatatttaa atattcatga
    16861 aatctataaa ttaaaga
//
LOCUS       DAJVUP010000087        16752 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.087, whole genome shotgun sequence.
ACCESSION   DAJVUP010000087 DAJVUP010000000
VERSION     DAJVUP010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16752
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.087"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..2020
                     /gene="fhuE"
                     /locus_tag="OQQ75_002564"
     CDS             <1..2020
                     /gene="fhuE"
                     /locus_tag="OQQ75_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferric-rhodotorulic acid/ferric-coprogen
                     receptor FhuE"
                     /protein_id="HCS1976847.1"
                     /translation="NDYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEV
                     MENTLEISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVE
                     VVRGATGLMTGTGNPSAAIDMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTED
                     GKIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTW
                     GGLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQRFADTWQATLNATHSEV
                     EFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYE
                     LFGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDT
                     THMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWS
                     TYASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSGWMNSRLTTTLAIFRIEQDNVA
                     QSTGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAV
                     NPNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDL
                     FTRYQVTKNFSLQGNVNNLFDKTYDTNMEGSIVYGAPRNFSITGTYQF"
     gene            complement(2080..3513)
                     /gene="ptsG"
                     /locus_tag="OQQ75_002565"
     CDS             complement(2080..3513)
                     /gene="ptsG"
                     /locus_tag="OQQ75_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIBC"
                     /protein_id="HCS1976848.1"
                     /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV
                     SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH
                     LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA
                     AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF
                     QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN
                     RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMHDG
                     TSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED
                     AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV
                     AGSGVQAIFGTKSDNLKTEMDEYIRNH"
     gene            complement(3808..4605)
                     /locus_tag="OQQ75_002566"
     CDS             complement(3808..4605)
                     /locus_tag="OQQ75_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1976849.1"
                     /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL
                     PGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYT
                     PETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED
                     RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE
                     NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR"
     gene            complement(4616..5620)
                     /gene="holB"
                     /locus_tag="OQQ75_002567"
     CDS             complement(4616..5620)
                     /gene="holB"
                     /locus_tag="OQQ75_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HCS1976850.1"
                     /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL
                     SRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNE
                     HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR
                     LHYLAPPPEQYTVTWLSREVTMSQDALLAALRLSAGSPSAALALFQGDNWQARETLCQ
                     ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE
                     LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
                     "
     gene            complement(5617..6258)
                     /locus_tag="OQQ75_002568"
     CDS             complement(5617..6258)
                     /locus_tag="OQQ75_002568"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HCS1976851.1"
                     /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT
                     QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD
                     LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE
                     QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA"
     gene            complement(6248..7270)
                     /gene="yceG"
                     /locus_tag="OQQ75_002569"
     CDS             complement(6248..7270)
                     /gene="yceG"
                     /locus_tag="OQQ75_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YceG"
                     /protein_id="HCS1976852.1"
                     /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL
                     KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL
                     ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGW
                     FWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE
                     TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI
                     TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL
                     KEKNAQ"
     gene            complement(7273..8082)
                     /gene="pabC"
                     /locus_tag="OQQ75_002570"
     CDS             complement(7273..8082)
                     /gene="pabC"
                     /locus_tag="OQQ75_002570"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HCS1976853.1"
                     /translation="MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQ
                     RLQDACQRLMIFCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR
                     ILSVTVYPAHYDRLRNEGMTLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD
                     EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE
                     VQASLEEALQADEMVICNALMPVMPVRACGDVSFSSATLYEYLAPLCERPN"
     gene            complement(8202..9443)
                     /gene="fabF"
                     /locus_tag="OQQ75_002571"
     CDS             complement(8202..9443)
                     /gene="fabF"
                     /locus_tag="OQQ75_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HCS1976854.1"
                     /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS
                     AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG
                     AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI
                     ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA
                     ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN
                     GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKAIFGEAASRVLVSS
                     TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNLDEGCDLDFVPHEARQVSGME
                     YTLCNSFGFGGTNGSLIFKKI"
     gene            complement(9531..9767)
                     /gene="acpP"
                     /locus_tag="OQQ75_002572"
     CDS             complement(9531..9767)
                     /gene="acpP"
                     /locus_tag="OQQ75_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1976855.1"
                     /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV
                     MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA"
     gene            complement(9978..10712)
                     /gene="fabG"
                     /locus_tag="OQQ75_002573"
     CDS             complement(9978..10712)
                     /gene="fabG"
                     /locus_tag="OQQ75_002573"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HCS1976856.1"
                     /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA
                     ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE
                     WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG
                     FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA
                     VAFLASDEAAYITGETLHVNGGMYMV"
     gene            complement(10725..11654)
                     /gene="fabD"
                     /locus_tag="OQQ75_002574"
     CDS             complement(10725..11654)
                     /gene="fabD"
                     /locus_tag="OQQ75_002574"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HCS1976857.1"
                     /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL
                     WALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA
                     GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVN
                     FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK
                     ITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG
                     PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL"
     gene            complement(11670..12623)
                     /gene="fabH"
                     /locus_tag="OQQ75_002575"
     CDS             complement(11670..12623)
                     /gene="fabH"
                     /locus_tag="OQQ75_002575"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HCS1976858.1"
                     /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI
                     AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG
                     CPAFDVAAACAGFTYALSVANQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG
                     AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT
                     ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS
                     AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF"
     gene            complement(12691..13761)
                     /gene="plsX"
                     /locus_tag="OQQ75_002576"
     CDS             complement(12691..13761)
                     /gene="plsX"
                     /locus_tag="OQQ75_002576"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415608.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HCS1976859.1"
                     /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDA
                     ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRMALELVKEGRAQAC
                     VSAGNTGALMGLAKLLLRPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ
                     FAIMGSVLAEEVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEAN
                     ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS
                     LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA
                     RLESVYPAGFELLDGGKSGTLR"
     gene            complement(13842..14015)
                     /gene="rpmF"
                     /locus_tag="OQQ75_002577"
     CDS             complement(13842..14015)
                     /gene="rpmF"
                     /locus_tag="OQQ75_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HCS1976860.1"
                     /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT
                     ADGYYRGRKVIAK"
     gene            complement(14067..14588)
                     /gene="yceD"
                     /locus_tag="OQQ75_002578"
     CDS             complement(14067..14588)
                     /gene="yceD"
                     /locus_tag="OQQ75_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HCS1976861.1"
                     /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD
                     VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL
                     PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEVQK
                     PNPFAVLASLKRK"
     gene            14787..15371
                     /gene="yceF"
                     /locus_tag="OQQ75_002579"
     CDS             14787..15371
                     /gene="yceF"
                     /locus_tag="OQQ75_002579"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-methyl-GTP pyrophosphatase"
                     /protein_id="HCS1976862.1"
                     /translation="MPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQL
                     VLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTF
                     YTGLALFNSANGHLQTEVEPFDVHFRHLCEAEIDNYVRKEHPLHCAGSFKSEGFGITL
                     FERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG"
     gene            complement(15483..16442)
                     /gene="rluC"
                     /locus_tag="OQQ75_002580"
     CDS             complement(15483..16442)
                     /gene="rluC"
                     /locus_tag="OQQ75_002580"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HCS1976863.1"
                     /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK
                     GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI
                     LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL
                     RSLHEQLREKGMQKDYLALVRSQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET
                     RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG
                     LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR"
BASE COUNT         4164 a         4546 c         4045 g         3997 t
ORIGIN      
        1 aaatgattac agcgtaacgt ctacctctgc gggtaccaaa atgcagatga ctcaacgtga
       61 tattcctcag tcggtcacta ttgttagcca gcagcggatg gaagatcagc agttacaaac
      121 gctgggcgaa gtgatggaaa acacgctgga gatcagcaaa agtcaggcgg attccgatcg
      181 tgctctttat tattcccgcg gattccagat cgataactat atggttgatg gtatccccac
      241 ctattttgaa tcgcgctgga atctgggcga tgcactttct gatatggcac tgtttgaacg
      301 cgtagaagta gtgcgtggcg cgacaggact catgaccggg acgggtaatc catctgcggc
      361 aattgatatg gttcgaaaac acgcgaccag tcgtgaattt aaaggcgatg tctcggcgga
      421 atacggtagc tggaacaaag aacggtatgt ggcggattta caaagcccac tcaccgaaga
      481 cggtaaaatc cgcgcgcgaa ttgtcggcgg ctaccagaat aacgactcat ggctggaccg
      541 ctacaacagt gaaaagacct tcttctccgg cattgtcgat gctgatttag gcgatcttac
      601 gacgctttca gccggttacg aatatcagcg cattgatgtt aatagcccta cctggggcgg
      661 tttaccgcgc tggaatactg atggcagcag caacagttac gatcgtgcac gcagtaccgc
      721 acctgactgg gcgtacaacg ataaagagat caacaaggtc tttatgaccc tgaagcagcg
      781 gtttgctgat acctggcaag cgacactgaa tgccacccac tctgaagtcg aatttgacag
      841 caaaatgatg tatgtcgatg cctatgtaaa caaagcggat ggtatgctgg ttgggccata
      901 cagtaattat ggacctggct ttgattatgt cggcggcacc ggttggaaca gtggcaaacg
      961 taaagttgat gcgctggatt tgttcgctga cggtagttat gaattgtttg gtcgtcagca
     1021 caatctaatg tttggtggca gttacagcaa acaaaacaat cgttacttca gttcatgggc
     1081 caacatcttc ccggatgaaa ttggcagttt ctacaacttt aatggcaatt tcccacaaac
     1141 cgactggtca ccacagagcc tggcacagga cgataccaca catatgaaat cgttatatgc
     1201 tgccactcga gtcacccttg ccgatccgct gcatctgatc ctcggcgcac gttataccaa
     1261 ctggcgggtt gatacgctga cttacagcat ggagaaaaac cacaccacgc cttacgctgg
     1321 tctggtgttt gacatcaatg acaactggtc gacctacgcc agctatacct ctattttcca
     1381 gccgcaaaat gatcgtgaca gttcaggcaa atatctggct ccaatcaccg gtaacaacta
     1441 cgagctgggt ctgaaatcgg gctggatgaa tagccgtctg accaccacgt tagccatctt
     1501 ccgtattgag caggataatg tcgctcagtc caccggtaca cctatccccg gcagcaacgg
     1561 cgaaaccgcc tataaagcgg tggatgggac agtcagtaaa ggggtggaat ttgaactcaa
     1621 cggcgcaatt accgacaact ggcagctgac atttggcgca acgcgctata ttgcagagga
     1681 taacgaagga aacgccgtta atcctaatct gccacgcacc acggttaaaa tgttcaccag
     1741 ctatcggttg cctgtcatgc cagagttgac agtcggcggt ggtgtgaact ggcaaaatcg
     1801 cgtgtatacc gacaccgtga caccgtatgg caccttccgc gccgagcaag gtagctacgc
     1861 gctggtggat ctcttcaccc gctaccaggt gacgaaaaac ttctcgttac aggggaacgt
     1921 caataacctg ttcgacaaaa cctacgatac caacatggaa ggttctatcg tctacggcgc
     1981 accgcgtaat ttcagcatta ccggcacgta tcaattctga ataacacctg taaaaaaggc
     2041 agccatctgg ctgccttagt ctccccaacg tcttacggat tagtggttac ggatgtactc
     2101 atccatctcg gttttcaggt tatcggattt agtaccgaaa atcgcctgaa caccagaacc
     2161 cgcaaccact acgcccgctg cgcccagttt cttcaggcca gcctgatcca ctttagacac
     2221 atcagcaacg ctgacgcgca gacgggtaat acatgcgtcg aggttagtaa tgttttcttt
     2281 accaccaaat gcagcaacca gagccggtgc catttcgctg gtacctgttg cttttgcatc
     2341 ttcagtcgcg tcttcacgac ccggcgtttt cagatccagt gctttaatca gcacgcggaa
     2401 gatggtgtag taaacaatcg cataaccgat accgacgatc gggaacagcc acagtttgct
     2461 gctgttacca gacagaacga taaagtcgat cagaccgtgc gagaacgacg taccgtcatg
     2521 catccccaga agaatacaga ttgggaatgc caggcctgcc agaatcgcgt ggatgatgta
     2581 caggatcggc gcaacgaaca tgaaggagaa ctcgatcggc tcggtgatac cggtcaggaa
     2641 cgaggtcagc gccgcggaga tcataatacc gcccactttc gcgcggtttt ctggtttagc
     2701 agagtgccag atagcaattg cggcagctgg cagaccgtac attttgaaca ggaagccacc
     2761 agacagttta cccgcagtcg ggtcacccgc catataacgc ggaatgtcgc cgtggaaaac
     2821 ctgacctgct gcgttggtgt attcaccaat ctgcatctgg aaaggtacgt tccagatgtg
     2881 gtgcagacca aacggtacca ggcaacgttc gatgaaaccg taaatgccaa acgcaactac
     2941 cgggttctgg taagcagccc actgagagaa ggtctggatt gcagaaccaa tcggcggcca
     3001 aatgaaggac agcacaacgc cagtaaagat ggcagccagg ccagaaatga tcggcacaaa
     3061 gcgtttaccg gcaaagaagc caagatactc aggcagctta atacggtaga aacggttaaa
     3121 catgtacgct gcgatcgcac cggagataat ccctccgagt acgccagtat ccgccaggtg
     3181 tttagaggcg atttcttcag caggtaaatg cagtaccagt ggcgcaacca cggccatggt
     3241 tttaaccatg atgccatagg caacaactgc ggccagcgcg gatacgccat cgttattggt
     3301 aaagccgagg gcgacaccga tcgcaaaaat cagtggcatg tttgcaaaga cggaaccgcc
     3361 tgcttctgcc ataacatgcg atacaacggc gggcagccag ctgaaattcg cggaaccgac
     3421 gcccagcaga atacctgcga taggtagtac ggataccggc agcatcagcg atttaccgac
     3481 cttttgcagg ttagcaaatg cattcttaaa cataattgag agtgctcctg agtatgggtg
     3541 ctttttttac gttctcacgc gtggcaaggg gggagagcct cgccgtgtac agggcatcta
     3601 agcgcccttt atttattaca cagagtaaaa taattcagtg ccaatttgtt tgacggctat
     3661 cacgtttcaa cttcagatca ttggagaagt tgcacatttt gacaaaacat atgtcacaat
     3721 atttcaaacg cggttattca ccgcccaatt ttcggcggtg aactttactc gttttagcca
     3781 ttaattacga gctttaaaaa aactcattca acggatggat tgaaggcggg aagcgtcgat
     3841 gtgaaacaga cgggcgaagt tatcggtggt tacctgcgcc agttcttcaa cggcaacacc
     3901 tttcaacaca gccatgtatt ctgcaacgtc acgaaccatc gcaggttgat tctcttttcc
     3961 tcgatgcggt accggcgcaa ggtaaggtga gtcagtttcc accagtaatc gatccagggg
     4021 gacataacgc gcagcatcgc gcagttgctc cgcattacgg aaggtcacaa tgccggaaaa
     4081 ggagatgtaa aatccgagat ccagtaattt acccgccgtt tctctgtcct ctgtaaaaca
     4141 gtgtagtacg ccaccgcaat ccgtcacttt ttcttcgcgc agaattgcca gcgtatcggc
     4201 acgggcgtca cgggtatgga cgataaccgg cttgttcagt tcacgaccaa tctggatatg
     4261 atggatgaag gactcttgct gacgtacttt agtttccggt gtgtaataat aatccagccc
     4321 ggtttcaccc agcgctacaa caccctcttc tgccgccaga cggcgtaaat cttctacatc
     4381 gtagggatca ttctggttga gtggatgcac gccacaagaa aatacgacgt tgtcacgttc
     4441 gcctaccaga tcccgcatat gtaaataacc cggtaatgtt gtggcgactg ccagacaaaa
     4501 tttcacatcg cgtgcggcgg ctttcgccag aacgtcatcc acgtccttat gcaaagattc
     4561 ataatccaga ccatcgagat ggcagtgtga gtcgactaaa aacatgatgt ctctcttaaa
     4621 gatgaggaac cggtagcaca acgcccggtt gcaggtaatg ctcaatacgc agtaaaagat
     4681 cggtgatgag aagctcgcgg ttgatgcctg tgacagacat taactgttca cgaatgtggc
     4741 aaacatcccc cagtatagcc tgcaggcgcg agggagaaag atggtttgcc agttcggcga
     4801 ccaggcccgg cacatcaaca ttggtcacct gtgcagcgcc atgatggcgt tttagcgcat
     4861 ccatcagcaa cgttgccagc cagtgtaaac gcgccggagc ttgttcatga ttaagggccg
     4921 ccagcagcga ataccagtcg cccgatggta cgctatatgc caacgcctga cacaatgttt
     4981 cacgagcctg ccagttatct ccctgaaaca acgccagtgc cgcgctaggc gaaccggcac
     5041 ttaagcgcaa tgcggcaagt aatgcatcct gtgacattgt cacttcgcgt gaaagccagg
     5101 tcacggtgta ctgttccggc ggcggcgcaa ggtaatgtaa ccgacaacga ctacgtaatg
     5161 ttgccagtaa acgttcaggc tcgcgggtag ccaggaaaaa ccaggtttct gctggtggct
     5221 cttcaagcgt tttcagcaat gcgttagccg cggcgtcggt cagtaaggca gcatcggtta
     5281 cccagacaac tttcgcacca cctaggcgtg cgtgctcatt cagcttttcg gtgacctcac
     5341 gtaccgcatc aatgcccagc gtatttttcc ctttttcggg agccagggtg tagtaatcgg
     5401 gatgcgtgcc agcctgcatc aactgacatc cacgacagtg accgcaactt ttgtggccct
     5461 gcggttgttg gcagagtaaa taacggctca gggcgtagat taaagcatca tcgcccatgc
     5521 ccggtaacgc ctgaatgagt agcgcatggt gacctcttcc ggcctgatag ctggctacca
     5581 gtttttcgaa atcaggtcgt aaccatggat accatctcat gcgtccaact ccttcaccca
     5641 gtgggtcacg gtagtacgga ttgcatccat cacggcctcc agcggctggg tggcatcaat
     5701 ggtatgaata cttttatctt gtgcagccag ttccagatag cgggcgcggg tgcgattaaa
     5761 gaaatcgaaa gactcttgct caatacgatc cagctcgccg cgcgcacgcg cgcgttttaa
     5821 gccaacttcc ggggtaacat cgagatagag cgttaagtca gggcgaaaat ccccgagaac
     5881 agcatcacgc agtgttgcca gcatatgttg gtcaatacca cgtcctccgc cctgatacgc
     5941 ctgagtggag agatcgtggc gatcgccaat cacccaggtg ccgttagcca gagctggttt
     6001 gatgaccgtt tctaccagtt gaacgcgcgc ggcataaaac atcagaactt cggctttatc
     6061 ggtaatgact tcatcgccta ccgatttgat atccagcacc aggcttctta acttttcggc
     6121 aagttgcgta ccgccaggtt cccgagtgaa aaccatgtcg cggataccca gttgctcaag
     6181 cgtctcaacc accacattac gcgcggtagt tttgcctgcg ccttccagcc cctcaatgac
     6241 gatatactta ctgcgcattt ttttccttaa gcactttcag ataatcctgc acagacttgt
     6301 tatggctggc aagattggta ttaaacgtgt gaccaccttt accatcggcc acaaaataga
     6361 gatacggcgt ttttgccgga tgcgcagcag ccttcagcga atccgccccc ggcgtagcta
     6421 tcgcacctgg cggcaaaccg gtaatggtat aggtgttata cgctgtcggc gtttccaggt
     6481 ctgcacgaga aagtttgcca ttataacgct ctcccatccc gtaaatcacg gttgggtcgg
     6541 tctgcaggcg cataccaatg cgtaaacggt tgataaatac cgaggcaacc tgatcgcgtt
     6601 cactggcaac ggcggtttct ttttcgataa ttgatgccat cgtcaccagc tggtttttat
     6661 ctttataagg cagaccgtcc gcacgccctt cccaggcgct atcgaccgct ttcaccattt
     6721 tcttgtgcgc tcgcttgagt aacgcgacat cggtggtatt ggcggtatac atccaggtgt
     6781 ctggccagaa ccaaccttca atccactccg ggttttccag ttcaagtgcc tgcgctacgg
     6841 tggcgtactt atcgtcactc agcgtgtgct tgatatacgg agcctcacgc aattgcttga
     6901 ggtagtcgct cagacgcatc ccttctacca gtcgcagcgg gaactgtgct tctttaccgc
     6961 tttccagcaa tttcagcatc tcgcgcacgg tcatctgcgg tgtaaagcgg taagtcccgg
     7021 ctttaaagtg agaaagatcc ggttcgatac gcagcaacca ttgaaaaacc cgtgggcgat
     7081 tgatgatctt atcggcataa agctgttcac caagcgccag acgtccggtc cctggcttca
     7141 gggtaaatat cgtctcttct ttgataagca atttgctgtc ggcaagatgg cgaaccttcc
     7201 agacgcccac accagcggcg atacccagta ccaccagcaa taacaagata atcaataaca
     7261 cttttttcat gactaattcg ggcgctcaca aagtggggct aaatattcat ataacgttgc
     7321 tgacgaaaag gagacatcgc cacaggcacg tacgggcatc actggcatta acgcattaca
     7381 aataaccatc tcatctgcct gcaacgcctc ttccagagag gcttgcactt cgacaagctg
     7441 ataagaggat tgtgccagca aacggataca gaattgtcgc ataatgccgt taacacctgc
     7501 ctgatccagt cgcggcgtat aaactacatt gcccttccgc cagaacaaat tagccgcaca
     7561 gcattccgta acccaccctt cgctgtcaag gaccagcgcc tcatcagcgt ttgtctgctc
     7621 aagatgagag cggatcaata cttgctcaag ccgattaaga tgtttaatac ctgcaagatg
     7681 gggattgcgc cccagccgca ccgggcttag cgccaacgtc atcccttcgt tacgcaaacg
     7741 gtcgtaatgt gcaggataaa ccgtaacgga gagaatccgc gttgccggtc cactgttcaa
     7801 tgtgctgtac cctcgcccgc cactaccgcg actgatcacg actttcagca caccattttg
     7861 ctgttctgct gccagcgttt tcatctcttg ttcaagctga ggccagaagt cacagaaaat
     7921 catcaaccgc tgacaagcat cctgtagtcg ctggatatgc gccgataaca aactgacttt
     7981 accgtcgata actctggcgg tggtaaaaca accatcacca aactgcgttg cccgatcgct
     8041 tactgccagc gattcctgct tatgaccgtt aattaagaac ataccggctc cttatcagag
     8101 aattgttagt gtggcagcat gctcactacg gaacaagtcg gaataaaagc taagaaaaaa
     8161 ggcccgcaag cggacctttt atatgggtgg gaaatgacaa cttagatctt tttaaagatc
     8221 aaagaaccat tagtgccacc gaagccgaag gagttacaca gcgtgtattc cattccgctg
     8281 acctgacgtg cttcatgcgg tacgaaatcc agatcgcaac cttcatccag gttatccagg
     8341 ttgatggttg gcggaacagc ctgatcgcgc agcgccagga tggagtagat agactctact
     8401 gcccccgccg cacctaacag gtgaccggtc atagatttcg tggagcttac caacacacgg
     8461 cttgcagctt caccgaagat ggctttcacc gcctgcgctt cagctttatc gccagccggc
     8521 gtagaagtac cgtgcgcgtt aacgtagcca atctgactcg cttcaatgcc tgcatcacgc
     8581 agagcatttg ccattgccag agctgcgcct gcgccatttt ctggcggtga cgtcatatga
     8641 taagcatcgc tgctcatacc aaagccgacg agttcagcgt aaattttcgc accgcgtttt
     8701 ttcgcgtgtt cgtactcttc tagtaccagc ataccggcac catcgcccag tacgaagcca
     8761 tcacgctctt tatcccacgg gcggctcgcc gcttgcgggt tatcattgcg ggtagataat
     8821 gcacgtgccg cgccaaaacc accaacgccc agcggcgtac tggctttctc tgcgccacct
     8881 gcaaccatca cgtcagcatc gccatacgcg ataatacgcg cagcatgacc aatgttgtgc
     8941 acgccggaag tacaggcggt cgcgatagag atgcttgggc cacgcaggcc atacatgata
     9001 gtcagatgac ctgccaccat gttcacaatc gttgacggaa cgaagaatgg gctgatctta
     9061 cgtggaccac cgttcatcag agatgtgtgg ttttcttcga tcagtccgag gccgccaatc
     9121 ccggagccaa ttgcggcacc aatgcgggtt gcgttctctt ccgttatttc aaggccagaa
     9181 tcctgcatgg cctgaacgcc agcgacaatt ccatattgaa tgaaggcatc catcttgcgc
     9241 tgttctttgc gcgagataat gtcctcacag ttaaaatcct ttactaagcc agcaaatttc
     9301 gttgcatagg cgctagtatc gaaatggtcg attaggctga tgccactctg accggcaagc
     9361 agagctttcc aggtagactc tacggtattg ccgacaggag acaacatgcc cagtccggtc
     9421 acaactacac gacgcttaga cacgtttgtc ctccagggag ggaaaaaatg attctagtgg
     9481 gacaaaaaga taaaactcag gcggtcgaac gaccgcctgg agatgttcac ttacgcctgg
     9541 tggccgttga tgtaatcaat ggcagcctga acggtggtga ttttctcagc ttcttcgtcc
     9601 ggaatctcag tatcaaactc ttcttccaga gccattacca gctcaacggt gtcaagagaa
     9661 tccgcgccca ggtcttcaac gaaagaagca ttgttggtaa cttcttcctg cttaacgccc
     9721 agctgttcgc cgataatttt cttaacgcgt tcttcgatag tgctcatact cttaaatttc
     9781 ctatcaaaac tcgctttcgc gatggttttc gtagtgtata aaatgttgaa aaatttgcaa
     9841 ctaaatcccg gcaggtctta ccacgatttt acgttatttt gaggccttac cccccaataa
     9901 cgcaaatcat tttgcactaa ttattactca taaccacgca gactgcgcgc aacatgagca
     9961 ttttgtgcaa atcgcggtca gaccatgtac atcccgccgt tcacatgcaa agtttcaccc
    10021 gtgatgtaag ctgcttcgtc ggatgccagg aatgcaaccg cgttggcgat ttcctgtgcg
    10081 ccgccgaggc gacccgcagg aacctgcgcc aggatacccg cacgctggtc atcgctcagc
    10141 gcacgtgtca tgtccgtttc aataaagccc ggagcaacaa cgtttacagt aataccgcgt
    10201 gacgcaactt cgcgcgccag tgatttactg aagccgatca agcccgcttt cgccgcagcg
    10261 tagttggcct gaccgccatt tcccatggta ccaaccacag aaccgatagt gataatacga
    10321 ccatgacgct ttttcatcat agcgcgcatt accgcttttg acagacggaa aacagatgaa
    10381 aggttggttt cgataatatc gttccactct tcatctttca ttcgcattaa caggttatca
    10441 cgagtgatac cggcattatt gaccaggata tccacttcac caaattctgc gcgaattttt
    10501 tccagaacag attcgataga tgccgggtcg gtcacattca acatcagacc tttgccgtta
    10561 gcacctaaat aatcactgat cgcctgagcg ccattttcac tggtcgcagt gccaataact
    10621 ttcgcgccac gggctgcgag cgtttcagca attgcgcggc caattccgcg gcttgcaccg
    10681 gttaccagtg cgatttttcc ttcaaaattc atgattttcc tcttttaaag ctcgagcgcc
    10741 gctgccatcg ctgaaggttc gttcagcgcc gaggcggtca gggtgtcgac aatgcgtttc
    10801 gtcaggccag ttagcacttt gcccgggccg acttcataga gatgttctac gccttgcgct
    10861 gccatgtact caacagactt cgtccactga accgggttat acaactgacg taccagtgcg
    10921 tcacgaatgg catcaccatt ggtttcgcat ttcacatcaa cgttattcac aacaggaact
    10981 gttggtgcgt taaaggtgat tttcgctaat tctactgcca gtttgtcggc tgctggtttc
    11041 atcagcgcac agtgagacgg tacgctcact ggtaacggca gcgcgcgttt tgcgcccgca
    11101 gctttacagg cagcgccagc acgctcaacc gcctctttat gaccggcaat aaccacctgt
    11161 cccggagagt taaagtttac cggagaaacg acctgacctt ctgcagcttc ttcacacgct
    11221 ttcgcaatag acgcatcatc cagaccgatg attgccgcca tagcgcccgt gccttctggt
    11281 acggcttctt gcatgaactt gccgcgcatc tcaaccagac gcaccgcatc agcgaaatca
    11341 atcacgccag cgcaaaccaa cgcggagtat tcccccaggc tgtgaccggc catcattgcc
    11401 ggtgctttac cgccctgctg ctgccatacg cgatacagcg caacagatgc agtcaacagc
    11461 gctggctggg tttgccaggt tttattcagt tcttcagctg gcccctgctg ggtcagcgcc
    11521 cacaggtcgt agcccagcgc cgcagaagct tcagcaaacg tttcttcgac aattggatag
    11581 ctcgccgcca tatcagccag cattccaacg gtttgagaac cctgtccagg gaacacaaat
    11641 gcaaattgcg tcatgtttta atccttatcc tagaaacgaa ccagcgcgga gccccaggtg
    11701 aatccaccgc caaaggcttc aagcagaacc aactgccccg gcttaatgcg cccgtcgcgt
    11761 acagcttcat ccagcgcgca cgggacagag gccgcagagg tattaccgtg gcgatccaac
    11821 gtcaccacga cattgtccat agacataccg agttttttcg ccgttgcact gataatacgc
    11881 aggttagcct gatgcggaac cagccagtcc agttgagaac ggtcaagatt attcgccgcc
    11941 agcgtctcat caacgatgtg cgccagttcc gttaccgcaa ccttgaagac ttcgttgccc
    12001 gccatcgtca gatgaattga attctctgga ttcacgcggt cggcgtttgg cagcgtcagc
    12061 aattcaccat aactaccgtc ggcatgcaga tgggtggaga tgattcccgg ctcttcagaa
    12121 gcagccagca ccgcagcgcc cgcgccatcg ccaaaaataa taatagtccc acgatctgtt
    12181 ggatcgcagg tgcgcgccag tacatcggaa ccgacgacca gagcatactt caccgcccca
    12241 gatttcacgt attgattggc tacgcttaat gcataggtga aacctgcgca ggctgctgca
    12301 acgtcaaatg ccgggcaacc tttaatgccc aacatgcttt gaatctgaca agctgcgctc
    12361 gggaaagcgt gcgtagcaga agtcgttgcc acaacgatca ggccaatctg gtctttctca
    12421 atgcccgcca tctcaattgc gcgtgtcgcc gcttcaaagc ccatggttga aacggtttcg
    12481 tttggcgcgg caatgtggcg ttcgcggata ccggtacgag tgacaatcca ctcgtcagag
    12541 gtgtccacca ttttttccaa atcggcgttt gtccgcactt gttcgggcag atagctgcca
    12601 gtaccaataa tcttcgtata catgtacgct cagtcacttt tcggttatat accgtcactt
    12661 gcaaactgcg agttcgctgg cagcgtcctg ctaccgcaga gttccgcttt tgccaccgtc
    12721 cagcagctca aaaccagctg ggtatacaga ttccaggcga gcggcaattc gctgaggaac
    12781 ttgtcgctgc accgcctgca ctgcctgttc aatcgcgacc gcaaaagctc gctgattggc
    12841 tgcaccatga ctttttatca ccgtgccgcg caatcctaac agacaggcgc cgttatactg
    12901 gtcggggttg aggtgactga atcgcctcgt caggctcttt tgtagccaac gctttaataa
    12961 cagtagccac cacgaccgtt ttttcccttc accctgagat ttcagcagag aaaggaacat
    13021 cctgacaaca ccttccatcg tctttaacgt gacatttcct gtaaagccgt cacaaaccag
    13081 cacatctgtc ttgccagtta acaactcatt ggcttcaaga tagccgatat aattgataga
    13141 agggattgtt ttaagcaccg ctgaggcatc ccgaatactg tcgagaccct ttacttcttc
    13201 ttcaccaata ttgagcaacg ccacgcgagg attgggaatt tccaccacct cttcagccag
    13261 aactgagccc ataatggcaa attgcaccaa cattgtgctg tcacaatcga cgttggcccc
    13321 taaatcgagg accaccgttt tgcccttttg ctgatgtggt aataccgtca ccagcgccgg
    13381 acgctcaatc ccctccaggg gcctgagtaa taattttgcc agccccatca gtgccccggt
    13441 attaccggca ctgacacagg cttgcgctcg accttctttc accagctcca gggccatacg
    13501 cattgaactc ccacgactag cgcggatagc ttgcgaaggc cgggcatcac tggcgataac
    13561 tgactgcgca ggaataatct gcagacgcga acgttgttca aagtcagctt tagcaagtaa
    13621 tggcgtgatg gcgtcgggat tgccgactaa aagaagagtg agttgcgaat tagaattcag
    13681 tgcctgcaat gctgcaggca ctgtcacgga agggccaaaa tcccctccca tgacatctaa
    13741 cgccagggtt agacgtgtca aggtatcgtc gccgcccggt ttggtctttc cccagttgcc
    13801 tggggaaaat cctcactaag cttcatcacg cagacgcgtg attacttagc gatgaccttg
    13861 cggccgcggt agtaaccgtc ggcagtgata tggtgacgca ggtgtttttc accagaagtt
    13921 ttgtctacag acaggctggt gactgcggtc agcgcgtcat gggaacgacg catgccacgt
    13981 ttggaacggg ttggtttatt ctgttgtacg gccatggacc ttactcctca attacggttt
    14041 atccccgatc caacggggag caccaattac ttacgcttta agctggctaa tacggcaaat
    14101 gggtttggct tttgcacttc ttcaggcagt tcaccaaaga ccatgtccgc ttcggacact
    14161 tcacagtgtt cagaatcatg caccggaact accggcaagg cgaggatgat ttcatcttca
    14221 accattgcaa gcagatcgat ttcaccgaat tcgttaacct caatcggttc atacgcttcc
    14281 ggcagtgctt cagcctgttc gtctgaacgc acaggactaa aacaatacgt tgtgtagacc
    14341 tgatgagtaa acggcttccc gcaacgctga cactcgagcg ttaccgtcac cttcgcatcg
    14401 ccgtttaaca ctgcgagacg ttggttatcg atagcgaacg acatggagca ttccacatca
    14461 ctgtccacac tgactacgga ttcggcgacg cgctcaacct gatcaggggt atagataccc
    14521 tggtaatcaa ggcgtttttg agccgtacga accggatcga gagtcagggg taattttacc
    14581 ttttgcatag ggcgcgcata ttaactttgt aacgtcatag agtcaaagaa aaaggcagcc
    14641 tgtggttgcc ttttgccaat aattcgcaca cattgcgggt tactgcttta ttttcgttca
    14701 gtgctgataa cgaacatcaa cctgcaaaac gaagcgcata gtttaaaatg gctatcatca
    14761 atacgctata tctgatggaa aaaaatatgc ctaaacttat tttagcctcc acctcgccat
    14821 ggcgtcgcgc tcttctggaa aaactgcaaa tctcttttga atgtgcagca ccagaggtcg
    14881 acgaaacccc acgcagcgac gaatcaccgc gacagttggt gcttcgactg gcacaagaaa
    14941 aagcgcaatc tctggcgtca cgttatccgg atcatttaat tattggttca gaccaggtat
    15001 gtgttcttga tggcgaaatc accggtaaac cgttaacgga agaaaatgcc cgtctgcaat
    15061 tacgcaaagc cagcggcaat atcgtcacct tctatactgg actggcgttg tttaattcgg
    15121 cgaatgggca tctacaaaca gaagtggagc cttttgacgt ccatttccgt cacctgtgcg
    15181 aggcggagat tgataattac gtgcgtaagg agcatcccct gcactgcgcg ggtagcttta
    15241 agagtgaagg atttggcatt acgctgtttg agcgtttaga gggacgtgac cctaacacgc
    15301 tggttggttt accgctaatc gcgctgtgtc agatgttacg tcgggaaggg aaaaacccgc
    15361 tgatgggata gttgtttgcg ccggatgcgg ttacgtcgca tccggcaatc ggtgcaggcg
    15421 gcctgatgcg gcgtaaacgc cttatcaggc caaccgccca ttatcaggct tatatgcttg
    15481 tattagcgcg cgttacgcag cttttgcaaa caacgcttca aaccttcatc catcggcgct
    15541 tcgatacgca tcacctcacc ggtccccgga tgggtaaact tcaacgctgc ggcgtgcagg
    15601 aacagacgat ttaatcccgt gcctgcttca gtgagctgtc tgtcaaattc acggtcaccg
    15661 tagcgatcgt caaaggcaat cggatgaccc gcatactgtg tatgcacacg gatctgatga
    15721 gtacgtccgg ttaccgggct acaacgcacc agggtggcaa atgcatagcg ttcttccact
    15781 ttaaagcgtg tttccgacgg tttgccttcc tgactgacac gcacgatacg ttcgccgctt
    15841 tgcagaatat ttttcaataa cggcgcttga acgctcttca catgcgactg ccactgactg
    15901 cgcaccagcg ccaggtaatc tttttgcatt cctttttcac gtaattgctc atgcagagaa
    15961 cgcaacgccg agcgtttttt cgctaccagc aacacacctg aagtgtcccg gtcgagacga
    16021 tgaaccagtt caaggaaccg cgcttccggg cgcaacgccc gcaaaccttc gataacgccg
    16081 aagcttaaac cactgccgcc atgtaccgcc gtaccggaag gtttattcag caccaggata
    16141 tgatcatctt catataagat gacgtccgcc agcgccgcca ccttttgcag atgtggcgaa
    16201 accgcctctt cttcccgctc agcaacgcga accggtggga tacgcacctc atcacccgct
    16261 tcgagtttat attcaggctt aatacgtttt ttgttcaccc gcacttcgcc tttacgcaaa
    16321 atacggtaaa tcatactttt tggtacgcct ttcaattggg tacgcaaaaa gttgtcgata
    16381 cgttgccccg cttcgtcagc ggtgatagca acaattttta cggatggagt ctctgttttc
    16441 atggtgggcg attctaatta gccaacagga ttcgcgccac tcatttttct atgcttatat
    16501 ttagttttac accttattac ttcactacgt gatcacttta ttgatggtta ttaaaccaat
    16561 caccagcaag aagtgaaaaa tgtaatgaac gcatcccaca caattaaaca cggagcagta
    16621 tgatggttaa aagggtgaaa ctggcaggtg tggagcctcg cagatttccg gcatcatagt
    16681 gcccaatacg ggatgcataa agctccctca gactggagac tccacaaatg aaatatacac
    16741 cggttggcgt tg
//
LOCUS       DAJVUP010000088        16608 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.088, whole genome shotgun sequence.
ACCESSION   DAJVUP010000088 DAJVUP010000000
VERSION     DAJVUP010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16608
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.088"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(28..2217)
                     /locus_tag="OQQ75_002581"
                     /pseudo
     CDS             complement(28..2217)
                     /locus_tag="OQQ75_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416896.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing phosphodiesterase"
     gene            complement(2426..2501)
                     /locus_tag="OQQ75_002582"
     tRNA            complement(2426..2501)
                     /locus_tag="OQQ75_002582"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2466..2468),aa:Ala,seq:ggc)
     gene            complement(2541..2616)
                     /locus_tag="OQQ75_002583"
     tRNA            complement(2541..2616)
                     /locus_tag="OQQ75_002583"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2581..2583),aa:Ala,seq:ggc)
     gene            2837..3196
                     /locus_tag="OQQ75_002584"
     CDS             2837..3196
                     /locus_tag="OQQ75_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1976864.1"
                     /translation="MFKERMTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKA
                     RLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLL
                     REGIIGLLQRLGIRDSK"
     gene            3198..3590
                     /locus_tag="OQQ75_002585"
     CDS             3198..3590
                     /locus_tag="OQQ75_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416898.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1976865.1"
                     /translation="MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGG
                     RARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGVRAPAYRQIINAIDNMTD
                     IEQEKVAQFLSREGIRNFLARLDIDESA"
     gene            complement(3641..5056)
                     /gene="gltX"
                     /locus_tag="OQQ75_002586"
     CDS             complement(3641..5056)
                     /gene="gltX"
                     /locus_tag="OQQ75_002586"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HCS1976866.1"
                     /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT
                     DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK
                     ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI
                     EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK
                     APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI
                     FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT
                     RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR
                     DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGR
                     TRSIERINKALAFIAERENQQ"
     gene            5316..5391
                     /locus_tag="OQQ75_002587"
     tRNA            5316..5391
                     /locus_tag="OQQ75_002587"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5349..5351,aa:Val,seq:tac)
     gene            5436..5511
                     /locus_tag="OQQ75_002588"
     tRNA            5436..5511
                     /locus_tag="OQQ75_002588"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5469..5471,aa:Val,seq:tac)
     gene            5558..5633
                     /locus_tag="OQQ75_002589"
     tRNA            5558..5633
                     /locus_tag="OQQ75_002589"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5591..5593,aa:Val,seq:tac)
     gene            5638..5713
                     /locus_tag="OQQ75_002590"
     tRNA            5638..5713
                     /locus_tag="OQQ75_002590"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5671..5673,aa:Lys,seq:ttt)
     gene            5833..6174
                     /locus_tag="OQQ75_002591"
     CDS             5833..6174
                     /locus_tag="OQQ75_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlxA-like family protein"
                     /protein_id="HCS1976867.1"
                     /translation="MATISSTSIPSIQTQSSNRASQGSDVASQIARISQQIIKLTQQI
                     KEIVDTSGSAEDKQKQAELIQQQITLLETQLAQLQKQQAEKAQEKEQRLSLDVSLLNP
                     VEKTTHIDIYI"
     gene            complement(6165..7091)
                     /locus_tag="OQQ75_002592"
     CDS             complement(6165..7091)
                     /locus_tag="OQQ75_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1976868.1"
                     /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH
                     TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT
                     ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
                     AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN
                     IVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNR
                     SLSTAAEALWDVVRDQGNALMAGREGDPLYQI"
     gene            7181..8179
                     /locus_tag="OQQ75_002593"
     CDS             7181..8179
                     /locus_tag="OQQ75_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HCS1976869.1"
                     /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL
                     LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF
                     LYLCTLPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGS
                     LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN
                     GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLGFNKADEITIVFCGSKKSLANG
                     IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA"
     gene            complement(8176..8394)
                     /locus_tag="OQQ75_002594"
     CDS             complement(8176..8394)
                     /locus_tag="OQQ75_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3820 family protein"
                     /protein_id="HCS1976870.1"
                     /translation="MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAG
                     KLGELMQITLLIKTEGLTQLVQPLKRPL"
     gene            complement(8396..10411)
                     /gene="ligA"
                     /locus_tag="OQQ75_002595"
     CDS             complement(8396..10411)
                     /gene="ligA"
                     /locus_tag="OQQ75_002595"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HCS1976871.1"
                     /translation="MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE
                     LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL
                     KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
                     GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR
                     PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED
                     RPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT
                     GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL
                     SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD
                     VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTF
                     ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE
                     ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL
                     GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS"
     gene            complement(10482..11468)
                     /gene="zipA"
                     /locus_tag="OQQ75_002596"
     CDS             complement(10482..11468)
                     /gene="zipA"
                     /locus_tag="OQQ75_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HCS1976872.1"
                     /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM
                     KSKRDDDSYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPR
                     QPVQQPPEAQVPPQHAPRPAQPVQQPVYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA
                     QQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQ
                     AGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYG
                     DELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA"
     gene            11698..12459
                     /gene="cysZ"
                     /locus_tag="OQQ75_002597"
     CDS             11698..12459
                     /gene="cysZ"
                     /locus_tag="OQQ75_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HCS1976873.1"
                     /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG
                     GAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP
                     FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIP
                     GIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSL
                     FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR"
     gene            12644..13615
                     /gene="cysK"
                     /locus_tag="OQQ75_002598"
     CDS             12644..13615
                     /gene="cysK"
                     /locus_tag="OQQ75_002598"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HCS1976874.1"
                     /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR
                     IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK
                     LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE
                     IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGE
                     EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA
                     AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ"
     gene            13999..14256
                     /gene="ptsH"
                     /locus_tag="OQQ75_002599"
     CDS             13999..14256
                     /gene="ptsH"
                     /locus_tag="OQQ75_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HCS1976875.1"
                     /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA
                     KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE"
     gene            14301..16028
                     /gene="ptsI"
                     /locus_tag="OQQ75_002600"
     CDS             14301..16028
                     /gene="ptsI"
                     /locus_tag="OQQ75_002600"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HCS1976876.1"
                     /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFL
                     SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA
                     AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA
                     ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL
                     ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG
                     TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM
                     DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRKEILRDQLRAILRASAFGKLRIMFPM
                     IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS
                     IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN
                     KFIEEKTIC"
     gene            16069..16578
                     /gene="crr"
                     /locus_tag="OQQ75_002601"
     CDS             16069..16578
                     /gene="crr"
                     /locus_tag="OQQ75_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HCS1976877.1"
                     /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE
                     KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE
                     GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLPGSVTVG
                     ETPVIRIKK"
BASE COUNT         4196 a         4276 c         4073 g         4063 t
ORIGIN      
        1 gataattccc cggttttttt acgcctgtta atcagctaat ggctgcgggc gaccaatcaa
       61 atacccttgc agatattgca ccccgagctt atgcaatagc gcctgctgct gttgcgtctc
      121 gacaaactcc gcgaccacac tcaatgactt cgctttcgcc agatcggtaa ttgatctcac
      181 aatcatcgca tccagcgtgt tcgtgacaat atctttcaca aagacgccat caattttgat
      241 gatatcagcc tgcaaacgct ttaaccgttc gtagttggca tagccggtgc caaagtcatc
      301 aatcgcaatc cggaaaccaa acttatgcag ctgctcgatg ttgtacatgc tgctttctgc
      361 gttagaaaac gcctgctcct cggtgatctc aagaatgacc gcctgcgggg agatgtgata
      421 acgcttaaac agacgaataa tccgcccggc aatattcttt tgcagcagcg tgagcggcat
      481 taaattgact gaaaagcgcg gtcctttttt gtcgcaaggg tgtgttgcca gccacttcaa
      541 caaggattcc agcacttgca aatcaaaacg cgcgctaagg ttaaactgag caataagggg
      601 cagaaactta tccggggtca taatgccgcc gtcatatttc agtcgcgcga ggatctcatc
      661 ataaccttca ccctctttgt tgcgaattgg ctgggcgtag agcagcaaat caccctgatc
      721 taacgccgtg cgaatggtat tcagcaatag cacctgttta gtggtctgcc cggaaaccat
      781 ctcctctctg ctatccagcg ccagcacatg atgatgtgcg caggattgct ccgccagcca
      841 gcttaactgc cccaacaagg gttgcagggt ttcctgattt ccatcaaaac gcccccaggc
      901 agcaccatag cccatatcca gcccggtatt gttccagtga atttgccgac tattcaggat
      961 gttaaccata tgctggagtc gcccttccgt ttccggcccg ctcagcacta acagcagttc
     1021 actacccggc aattgataca acttttcgtt ttcctgcatc aacggcagca gcgtacggca
     1081 aattgagcgg atacagtgaa cgcgcatcat taagccgtaa tgacgactca taaactcaag
     1141 attatcaatg cgcaggcagc aaaaactctt gcccgcctct tgctccggcg cttgttccaa
     1201 cgcacggaag ttgggcagga gcgttaacgg atcggtcagc gcctgcaaat gccagcggcg
     1261 attaagccat tcactgcgat gataaatgcg caccatatag agcaggcaaa cgctaaagga
     1321 aatcagcacc gcaagaataa atgccagcga atattcggtt tccacccctt gcaaaaagtt
     1381 ctggttgtaa ttcagaaggc aaagcgttga aacagcccag gtgagattta aaaacggata
     1441 gcgaagctta ccgaccccga gggtaaagat gatgaagaaa acgggtacca ggtaaccggc
     1501 aataaagtcg ttttcataag gtgtgcacaa cagaagtaga agcacgctta acgctgccag
     1561 ccagcttaag gtaaatgcgc gtttctcttt gcccaacgac ggcgcgatat ccctgcgcca
     1621 caatatctgc gcaaagtggg gacttacaat catgcgagtg agatagtaga aaagcatgtt
     1681 gtaaatcagc acagcggtga aaaggcttag caaatcaacg accgtgaaaa tggcatccgc
     1741 atcgccgaaa aaggtggata tctttagcgg gaaatcaaag aagctcccca caagatacat
     1801 gctgcatttg atgccgatcg gcgtcaccaa accaagccag aacagacgtt gccagacata
     1861 tcggctggtc aatccataac gccaacgcgt ccccagctgc cagcgtaata ttgcgcaggc
     1921 acacaacacg acaaacgtct ggctaccgag catgaccgca gtctataaaa aagagagatg
     1981 aaagttccac agattggtgc aaaacatccc gcataaaacg ggaacgacac ctcgccagcc
     2041 aaagataaac aagattgaca gcattacgca cagtggcatc cacgccagaa agatataact
     2101 ggaatggata atggcaagtg gcgaaataaa acgggatagc tgaataagta ccacggtgag
     2161 cgtaaacgct agtgtgaata tcttgatatt ttttatcagg ttatgctcca caaacatgag
     2221 tacactactc tcactgatcg gagttttcag gcacacaaat aataagttta ttcgcatcgc
     2281 gaagcaaaca gggggccagc ctgttgccga tttttcatcc aatgatgctt tcaccaggcg
     2341 gcactaaccc ggacgtagac tgtattacaa aagcggcaaa aagcagagac aaaaaacccc
     2401 cgctttgcag cgagggttgg aaatttggtg gagctaagcg ggatcgaacc gctgacctct
     2461 tgcatgccat gcaagcgctc tcccagctga gctatagccc cacgatgcgt ttacgtacca
     2521 aatttgctgg gtgcaaaatt tggtggagct aagcgggatc gaaccgctga cctcttgcat
     2581 gccatgcaag cgctctccca gctgagctat agccccgtca cgtaaagctt gtcgagttga
     2641 cgggcggcat catatgaatt ccgcccgaat gtgtcaacgg caaattgcaa cgtgtagttt
     2701 caatcgctga aaaatcaggc aaatgaacaa ttttggaaaa ccgctcgcat tcagtagtta
     2761 ttcatgtcac ggtttcctgt aaagtggtgt tataaaatga actactaata gacccacata
     2821 cattcaggga attgttatgt tcaaggagag gatgacacca gatgaacttg ccagactgac
     2881 cggctatagc cgccagacca ttaataaatg ggtacgcaag gaaggctgga caacgtcacc
     2941 aaaacctggc gtccagggtg gcaaagcccg actggttcac gtcaatgaac aggttcgtga
     3001 atatattcgc aatgctgaac gtccagaagg tcagggagaa gcgcctgccc tttctggtga
     3061 tgcgccgctt gaagtattgc tggtgacact ggcgaaagag atgacgccag ttgaacaaaa
     3121 acagtttaca tccttgcttc tgcgggaagg gattatcgga ttgttacaac gcttagggat
     3181 tcgcgatagc aaataatatg aaaagattac gcaataaaat gaccaccgaa gaactggctg
     3241 aatgcctcgg tgtggctaaa caaactgtta accgttggat cagagaaaaa ggctggaaaa
     3301 cggaaaaatt tcccggcgtg aaaggcggtc gtgccagact tattctggtc gatacgcaag
     3361 tttgcgagtt tattcagaac acgccagcct tccataacac accaatgttg atggaagctg
     3421 aagagagaat tgctgaatac gctcctggag tacgcgcccc ggcgtatcga caaatcatca
     3481 acgcgataga taatatgaca gacattgagc aggaaaaagt cgcgcaattt ttgtcacgtg
     3541 aaggaattcg caatttcctc gcccgtctcg atattgacga atcagcataa ataaaaaacg
     3601 gcaggatatt atctcctgcc gtttatcttt tatgcgctaa ttactgctgg ttttcgcgtt
     3661 cagcaataaa agccagcgct ttgttgatac gctcaatact gcgggtccta ccaattgcgt
     3721 gaacggtaac atccagtgcc ggagactgcc ccgcaccggt tacggcgaca cgcagcggca
     3781 taccaacttt acccataccc acttccagct catccgccgt cgcctgaata gcgtgatgaa
     3841 cgttttcagc ggtccagtca gtaatcgcgg ccagtttgtc acgaaccact tccagcggct
     3901 gacgcgctac cggacgcaga tgttttttcg cggcgtcggc atcgaactca gcaaaatctt
     3961 cgtagaaata acggcagctc tgtgccatct ctttcagcgt cttgcagcgt tcgcccagca
     4021 gtttcaccag atcagccagc tgcgggccgt tacgggtatc gatattttcc tgctcaatgt
     4081 gccactgtaa gtgagtagca acatactccg gcggcagcgc gttaatgtag tgatggttca
     4141 gccacagcag cttgtcggtg ttgaacgcac tggcagattt gctgacggca ttcagggtga
     4201 agtatttgat catctcttca cgagtgaaga tttcctgatc gccgtgggac cagcccagac
     4261 gcaccagata gttcagcagt gcttctggca aataaccgtc atcacgatac tgcattacgc
     4321 tgaccgcccc gtgacgtttg gacagttttt taccgtcatc gccgttgatc atagaaacgt
     4381 gcgcgtaaac cggcaccggc gctttcaggg ccttaagaat gttgatctgg cgtggcgtgt
     4441 tgttgatatg gtcttcgcca cggataacgt gggtgatttc catatcccag tcatcgacaa
     4501 ccacacagaa gttataggtt ggggaaccat cggtacggcg aataataaga tcgtccagtt
     4561 cctggttgct gaactcgatc ggaccacgga tctgatcgtc aaaaacaaca gaaccttcct
     4621 gcgggttagc aaaacgtaca acgcacggtt catcatcagc gtgatgctca tggctgtggc
     4681 ggcagcgacc gtcataacgc ggcttctcac ctttcgccat ttgctcttcg cgcagcgctt
     4741 ccaggcgctc tttagagcaa tagcatttat aagcagtgcc ctcttccagc atctgatcga
     4801 tcaccgcgtt gtagcgatca aaacgtttgg tctggtagta cggaccttca tcccactcca
     4861 ggctcagcca gttcatgcca tccataatgg cttcgatagc ttccggcgtg gaacgctcaa
     4921 gatcggtgtc ttcaatacgc agcacgaact caccgccgtg gttacgtgca aaaagccagg
     4981 agtaaagggc agtacgcgcg ccgccaacgt gcagatagcc tgttgggctt ggcgcgaagc
     5041 gagttttgat tttcatgaaa tggccttacg tttagaaaga tgccgacaac cggcaaatcc
     5101 tggaaaaatt gagtgggcga tattctatca ctcccgcctg attcctcaat gtagttcggg
     5161 tttctacctt acgcattatt gttttcgttg acaaattgcg caacacggtc tattttgcga
     5221 tcatcttgct taaatttacg acgaacgaac aatttcttta gaaaatgcgt tgactcattt
     5281 tgaactctcc ctataatgcg accccacaca gcggggggtg attagctcag ctgggagagc
     5341 acctccctta caaggagggg gtcggcggtt cgatcccgtc atcacccacc aactacttta
     5401 tgtagtctcc gccgtgtagc aagaaattga gaagtgggtg attagctcag ctgggagagc
     5461 acctccctta caaggagggg gtcggcggtt cgatcccgtc atcacccacc actttctcac
     5521 cagctaaatt tcttgtaaca atgtgaagta ccgaagtggg tgattagctc agctgggaga
     5581 gcacctccct tacaaggagg gggtcggcgg ttcgatcccg tcatcaccca ccacttcggg
     5641 tcgttagctc agttggtaga gcagttgact tttaatcaat tggtcgcagg ttcgaatcct
     5701 gcacgaccca ccaatgtaaa aaagcgccct aaaggcgctt ttttgctatc tgcgatttgt
     5761 aagattgatt tttcttctca agttccttgt tcttctaccg atattacctc gtacagtgac
     5821 gaggactgaa caatggccac tatctcttca acttcaattc cttccataca aacacagagt
     5881 agtaacaggg catcacaagg tagcgatgtt gcttcacaaa tcgcgcggat aagtcagcaa
     5941 atcatcaaac tcactcaaca aattaaagag attgtagaca ctagcggcag tgctgaagac
     6001 aagcaaaaac aggccgaatt gattcaacag caaatcaccc tactggaaac acaactggcg
     6061 cagttgcaga aacagcaggc agaaaaggcg caggagaaag agcagcgttt gtctctggat
     6121 gtatcccttc taaatcctgt tgaaaaaacg actcatatcg atatctatat ctgatacaac
     6181 ggatcccctt cccgaccagc cattagcgca ttgccctggt ctcgtaccac gtcccataac
     6241 gcttcagcgg cggtggaaag tgaacggttc ttcctgcgca ccagcatcaa ctggcgttca
     6301 acaaccggcg taatgcgctt taccaccagt gggctacctt caggcaatgg tagcgccagt
     6361 gcgggaagaa tactgatgcc gatgcctgcg gctaccatcg ggaacagcgt cgccggatgt
     6421 ccaatctcct gcacaatatt cgcctgaata ccattgcgcg ccagcgctgc gtcaatcagc
     6481 ggtcggctgc ctgacgcgta atcctgcaac accaatttcg ctccctgtaa tgcctgccag
     6541 ggtacataat cttccacggc caaagcgcta tcgcgatggc aaagcagaaa gaaaggctcg
     6601 gaaagaatcg cttcacattg cagatcgccc actgggcctg gatcgatgac gatgccaaag
     6661 tcgacatctc cctggcgaat actttccatc acccactgct gcggacgatc gtgcaggaca
     6721 aactgaatat ctggatagcg gcgatggctt tcagcaatgc attgcggaat aagatgcgcg
     6781 gaaatggtct ggctggcagc gacccgaact tttccgctca gttgttgccc catacgcccg
     6841 gtatcgcgca acgtgctgtt aagttcatcc agcagtcgct caagacgcaa agccaactgc
     6901 tgccctgcat ctgtaagcac cacttcacgc gtggttctgt ccagcaggcg aacaccagta
     6961 tgattttcca gctccttcac actgtgactt actgccgact ggctcaagcc gatacgctct
     7021 cctgcacgac taaaactttt ctcctgcgct actgtgacga aaacctttaa ttgttttaaa
     7081 gaataattca tctgttttct tcatgaatgg atgcaataaa tcaattttat ttctcaaact
     7141 ggaagaagca caatagaacc atcgatcatc tggagtcttt atgaaacttt ttcgtatcct
     7201 cgatcctttc accttaaccc tgatcacggt ggtgttgctg gcctctttct ttccggccag
     7261 aggcgatttc gtccccttct ttgaaaatct gaccaccgca gctattgccc tgctgttctt
     7321 tatgcacggc gcgaagttgt cgcgtgaggc gattattgct ggcggtggtc actggcgact
     7381 gcatttgtgg gtaatgtgca gcaccttcgt gctgtttccg attctgggtg tactgtttgc
     7441 ctggtggaaa ccggtaaatg tcgacccgat gctctactcc ggttttctct acttgtgcac
     7501 tctcccggct accgtgcagt ctgcaatcgc cttcacgtca atggcgggcg gtaacgtcgc
     7561 ggcggcggtt tgttctgcgt cagcatccag cctgctggga attttccttt caccattgct
     7621 ggttggtctg gtgatgaatg ttcacggtgc agggggcagc cttgagcagg tcggtaaaat
     7681 tatgctgcaa ctgctgctgc cgtttgtgtt ggggcatctt tcccggccgt ggattggtga
     7741 ctgggtgtcg cgcaataaaa aatggattgc gaaaactgac cagacgtcca ttctgttggt
     7801 ggtttataca gcgttcagcg aagccgtcgt taatggtatc tggcataaag ttggctgggg
     7861 atcattgctg tttatcgtgg tggtcagctg cgttcttctg gctatcgtga ttgtagttaa
     7921 cgtctttatg gcacgccgac tgggcttcaa taaggcagat gaaattacta tcgtcttttg
     7981 tggttcgaaa aagagtctgg caaatggcat cccgatggca aacattctgt tccccacatc
     8041 ggtgatcggt atgatggtgc tgcccctgat gattttccat cagatccaat tgatggtctg
     8101 tgcggtgctg gcgcgtcgat acaaacgcca gaccgaacag ttacaggcgc agcaggaaag
     8161 cagcgccgat aaagcttaaa gcggacgctt caggggctgg accagttgcg tcagcccctc
     8221 ggttttaatc agcagcgtga tttgcattag ctcaccgagc ttccctgccg ggaactcatc
     8281 tttgcgggca aaccacagca gatactcctc cggcaggtcg attaagcgac gccctttgta
     8341 tttgccaaac ggcattatcg tattggctat ttcaatcagc tgctcttttt ccatctcagc
     8401 tacccagcaa acgcagcatt tccgcttcgt cgatgacttc aatgcccagt tcctgcgcct
     8461 tcgccagttt agatcctgca gcttcacccg caatcaccag atcggttttc ttcgacacgc
     8521 tgcccgcgac tttcgcgccc agttcgacca gtcgagcttt agcgtcatca cgcgacatct
     8581 ggcttaagct gcccgtaagc accacggttt taccagcaaa cgggctgtca atctcttccg
     8641 cgttgataac gatcggcgca ggccagtgaa caccttccgc caacagctcg ctgatgacat
     8701 tgcggttgct ttcttcggca aagaagttgt gaacgtggga tgcaacgaca atgccaacat
     8761 caggcacctt ttgcagctct tcaatcgaag cggcttccag cgcttccagc gtgccgaaat
     8821 atgccgccag acctgctgcg gtggcctcgc cgacttcacg gatgccaagt gcatagagga
     8881 agcgagcaaa ggtggtttct ttcgcttttt ccagcgcgtt aaccacgttt tgtgccgatt
     8941 ttggccccat acgctccagt ccggtcagtt tgcctgcggt gagtttgaac agatctgccg
     9001 gagtgtggac atattctttt tcaaccagct gatcgatgat tttgtcgccc attccgtcaa
     9061 catccatcgc acggcgggaa acaaagtgtt tcagcgactc tttacgctgc gcaccgcaaa
     9121 tcaggccacc ggtacagcgg gcaaccgctt caccttccac acgctcaacg tcagaaccac
     9181 ataccggaca atgcgtcggg aatacaacct cacgggtatc ttccgggcgt tcagaaagca
     9241 cgacgttaac cacctgcggg atcacgtcgc cagcgcggcg aatcaccact ttatcgccaa
     9301 tgcgtaaacc aagacgttcg atttcatccg cattgtgtaa ggttgcgtta ctcaccagca
     9361 cgccagcaac atggacaggt tccagacgcg caacaggcgt aatcgcgcca gtacgcccaa
     9421 cctgaaactc gacgtcacgc acaaaggtca tctgctcctg cgccgggaat ttaaacgcta
     9481 ccgcccagcg cggggcacgc gcgacaaagc caagctgctc ctgctgttcc agtgagttga
     9541 ccttaatcac cacgccgtcg atatcaaagc ccagcgtcgg gcggtcttct tccactttgt
     9601 gatagaacgc cagcacttct tccgccgatt cacaaagcgt tacccgatcg ctgaccggca
     9661 acccccactt tttaaattgc agtaaacggc caagatgagt atccggcagc tcgccacctt
     9721 ccagaacacc aacgccatag cagaaaaaag tgagcggtcg cttcgctgta atacgcggat
     9781 caagctgacg cagtgaacca gctgccgcat tacgtgggtt agcaaaaact ttcccgcccg
     9841 tgcgtcgcgc atcttcgtta atcttttcga accccgcctg cggcaggaac acttcaccac
     9901 gcacttccag acgcgccggg atattctctc catgcagctt cagcggaatg gcgcgaatag
     9961 tacgcacatt agacgtgata tcttccccgg tggtgccatc gccacgggtc gcggcactga
    10021 ctaaaacgcc attttcatac agaatactga cggcaaggcc atccagcttc agctcacagc
    10081 accaggtgac tttctcgttg tttttcagac ggtcctgcac acgtttgttg aaagcaagaa
    10141 agctttcttc atcaaaaacg ttatccagtg acagcattgg tacttcatgg cgtatctggc
    10201 tgaaagccgc cagcggcgca gcacctacac gttgggtagg cgaatcaggc gtaatcagtt
    10261 ctggatgttt agtttccagc tcgcgcagtt cgcgcatcag cctgtcgtat tcagcgtcgg
    10321 gaatttccgg cgcatccatc acatgataaa gatattcatg atggcgaagc gtcgttcgca
    10381 gttctgtcag ttgttgttcg attgattcca tatcgcacca tcaatgctaa aaacccccga
    10441 caagcggggg ttcgaagaag agttaatttg ccttaagtgt atcaggcgtt ggcgtctttg
    10501 acttcgcgga tgatgtcctg gtactcgcgc aatttctgcg gagtcatcat acggcgctga
    10561 tcgtcaagca cgacaccgcc cacttcatcg gcaatatgct gcgcagattg cagcatcagc
    10621 ttgaagttct gcagctcgtc accgtaagac ggtacctgca taaagatagt gacacccgga
    10681 gtagtgaaat ccttcatttc aggatcaaag gttcccggtt tcaccatatt cgccaggctg
    10741 aataacgccg ggccgctgcc atccgggcta agatgacgat ggtaaatatt catatcgcca
    10801 aaaatgaagc ccgcttgttg aatgctgtta agaagcagtt caccgtttag ctcgctaccg
    10861 tgatgcgccg cgacgttcat gataatcacc gcttctttgc gcttcggttt atccataact
    10921 ggagccggtt ccgctacagg ctcaggctgt ggtgccgcta cgggttctgc aggctggaaa
    10981 gcctgttgtg ccggttgcgg tgctgaatgc acaggctgcg gcgctggcgc gacctgtggc
    11041 gaaactggct gctgcaacgg ctgttcaggc tgcggctgat agacaggctg ctgcaccggc
    11101 tgcgctggac gcggagcatg ttgcggcggt acctgcgctt caggcggctg ctggaccggt
    11161 tgacgcggct gcgcagacgc ataaggcggt tggtactggt gttgcggcga cggacgagca
    11221 gcctcatgct cctgagcgtt agccggggca tgattcacgc ggtgaacacg aacctcacca
    11281 acgccctcat catcttcgac atcctcgtca taagaatcgt cgtcacgttt tgacttcatt
    11341 cgttttaatg gccgatcgcg gaacatagaa gatcgttctt tacggctggt ccagaaacca
    11401 tgtaccagta aagcgattat ggcgatcgcg ccaacaatga ttaatatcag acgcaaatcc
    11461 tgcatcatta tattctctgt tgttctaaca ccttgccacc acggcaaaca tttactcact
    11521 aagagtattt gccgattacc tcaagtgcaa gtgcactatt aactttcaca gcacaaagat
    11581 agatgaaatc gtgctttttg ctgttttttc gaacatatcc taactgtcca ttgcgcaatt
    11641 acccggtaaa atacgcagaa ttttcctagg attggtcaaa aggagctcat cctgattatg
    11701 gtttcatcat tcacatctgc cccacgcagc ggtttttact attttgcgca aggctggaag
    11761 ctcgtctcgc aacctgggat tcggcgtttc gttattttac cgctgctggt caatattttg
    11821 ttgatggggg gcgcattctg gtggctcttt acacagctcg atgtctggat cccgactctc
    11881 atgagttacg ttccggactg gctacaatgg ctgagttatc tgttgtggcc tctggctgtc
    11941 atctctgtgc tgttagtgtt tggctatttc ttctccacga ttgctaactg gattgccgct
    12001 ccgtttaacg gtttattggc tgaacaactg gaagcacgat tgactggcgc tacaccgcca
    12061 gataccggga ttttcggtat catgaaagat gtgccgcgaa tcatgaaacg cgaatggcaa
    12121 aaatttgcct ggtatctgcc gcgcgcaatt gtattactaa ttctttactt catccctggt
    12181 attgggcaaa ccgtcgcgcc ggtactgtgg ttcctgttta gcgcctggat gttagccatc
    12241 cagtattgcg attacccctt cgataaccac aaagtgccgt ttaaagagat gcgcaccgcc
    12301 ctgcgcacac gcaaaatcac caatatgcag tttggtgctt taaccagcct gtttacgatg
    12361 atcccgctgc ttaatctgtt catcatgccc gttgccgttt gtggcgcgac ggcgatgtgg
    12421 gtcgattgct atcgcgataa acacgcgatg tggcggtaac aatctaccgg ttattttgta
    12481 aaccgtttgt gtgaaacagg ggtggcttat gccgcccctt attccatctt gcatgtcatt
    12541 atttcccttc tgtatataga tatgctaaat ccttacttcc gcatattctc tgagcgggta
    12601 tgctacctgt tgtatcccaa tttcatacag ttaaggacag gccatgagta agatttttga
    12661 agataactcg ctgactatcg gtcacacgcc gctggttcgc ctgaatcgca tcggtaacgg
    12721 acgcattctg gcgaaggtgg aatctcgtaa ccccagcttc agcgttaagt gccgtatcgg
    12781 tgccaacatg atttgggatg ccgaaaagcg cggcgtgctg aaaccaggcg ttgaactggt
    12841 tgaaccgacc agcggtaata ccgggattgc actggcctat gtagctgccg ctcgcggtta
    12901 caaactcacc ctgaccatgc cagaaaccat gagtattgaa cgccgcaagc tgctgaaagc
    12961 gttaggtgca aacctggtgc tgacggaagg tgctaaaggc atgaaaggcg caatccaaaa
    13021 agcagaagaa attgtcgcca gcaatccaga gaaatacctg ctgctgcaac aattcagcaa
    13081 tccggcaaac cctgaaattc acgaaaaaac caccggtccg gagatctggg aagataccga
    13141 cggtcaggtt gatgtattta ttgctggcgt tgggactggc ggtacgctga ctggcgtcag
    13201 ccgctacatt aaaggcacca aaggcaagac cgatcttatc tctgtcgccg ttgagccaac
    13261 cgattctcca gttatcgccc aggcgctggc aggtgaagag attaaacctg gcccgcataa
    13321 aattcagggt attggcgctg gttttatccc ggctaacctc gatctcaagc tggtcgataa
    13381 agtcattggc atcaccaatg aagaagccat ttctaccgcc cgtcgtctaa tggaagaaga
    13441 aggtattctt gcaggtatct cttctggagc agctgttgcc gcggcgttga aactacaaga
    13501 agatgaaagc tttaccaaca agaatattgt ggttattcta ccatcatcgg gtgagcgtta
    13561 tttaagcacc gcattgtttg ccgatctctt cactgagaaa gaattgcaac agtaatgcca
    13621 gcttgttaaa aatgcgtaaa aaagcacctt tttaggtgct tttttgtggc ctgcttcaaa
    13681 ctttcgcccc tcctggcatt gattcagcct gtcggaactg gtatttaacc agactaatta
    13741 ttttgatgcg cgaaattaat cgttacagga aaagccaaag ctgaatcgat tttatgattt
    13801 ggttcaattc ttcctttagc ggcataatgt ttaatgacgt acgaaacgtc agcggtcaac
    13861 acccgccagc aatggactgt attgcgctct tcgtgcgtcg cgtctattaa aaactggcgc
    13921 taacaataca ggctaaagtc gaaccgccag gctagacttt agttccacaa cactaaacct
    13981 ataagttggg gaaatacaat gttccagcaa gaagttacca ttacagctcc gaacggtctg
    14041 cacacccgcc ctgctgccca gtttgtaaaa gaagctaagg gcttcacttc tgaaattact
    14101 gtgacttcca acggcaaaag cgccagcgcg aaaagcctgt ttaaactgca gactctgggc
    14161 ctgactcaag gtaccgttgt gactatctcc gcagaaggcg aagacgagca aaaagcggtt
    14221 gaacatctgg ttaaactgat ggcggaactc gagtaatttc ccgggttctt ttaaaaatca
    14281 gtcacaagta aggtagggtt atgatttcag gcattttagc atccccgggt atcgctttcg
    14341 gtaaagctct gcttctgaaa gaagacgaaa ttgtcattga ccggaaaaaa atttctgccg
    14401 accaggttga tcaggaagtt gaacgttttc tgagcggtcg tgccaaggca tcagcccagc
    14461 tggaaacgat caaaacgaaa gctggtgaaa cgttcggtga agaaaaagaa gccatctttg
    14521 aagggcatat tatgctgctc gaagatgagg agctggagca ggaaatcata gccctgatta
    14581 aagataaaca catgacagct gacgcagctg ctcatgaagt tatcgaaggt caggcttctg
    14641 ccctggaaga gctggatgat gaatacctga aagaacgtgc ggctgacgta cgtgatatcg
    14701 gtaagcgcct gctgcgcaac atcctgggcc tgaagattat cgacctgagc gccattcagg
    14761 atgaagtcat tctggttgcc gctgacctga cgccgtccga aaccgcacag ctgaacctga
    14821 agaaggtgct gggtttcatc accgacgcgg gtggccgtac ttcccacacc tctatcatgg
    14881 cgcgttctct ggaactgcct gctatcgtgg gtaccggtag cgtcacctct caggtgaaaa
    14941 atgacgacta tctgattctg gatgccgtaa ataatcaggt ttacgtcaat ccaaccaacg
    15001 aagttattga taaaatgcgt gctgttcagg agcaagtggc ttctgaaaaa gcagagcttg
    15061 ctaaactgaa agatctgcca gctattacgc tggacggtca ccaggtagaa gtatgcgcta
    15121 acattggtac ggttcgtgac gttgaaggtg cagagcgtaa cggcgctgaa ggcgttggtc
    15181 tgtatcgtac tgagttccta ttcatggacc gcgacgcgct gcccactgaa gaagaacagt
    15241 ttgctgctta caaagcagtg gctgaagcgt gtggctcgca ggcggttatc gttcgtacca
    15301 tggacatcgg cggcgacaaa gagctgccat acatgaactt cccgaaagaa gagaacccgt
    15361 tcctcggctg gcgcgctatc cgtatcgcga tggatcgtaa agagatcctg cgcgatcaac
    15421 tccgcgctat cctgcgtgcc tcggctttcg gtaaattgcg cattatgttc ccgatgatca
    15481 tctctgttga agaagtgcgt gcactgcgca aagagatcga aatctacaaa caggaactgc
    15541 gcgacgaagg taaagcgttt gacgagtcaa ttgaaatcgg cgtaatggtg gaaacaccgg
    15601 ctgccgcaac aattgcacgt catttagcca aagaagttga tttctttagt atcggcacca
    15661 atgatttaac gcagtacact ctggcagttg accgtggtaa tgatatgatt tcacaccttt
    15721 accagccaat gtcaccgtcc gtgctgaact tgatcaagca agttattgat gcttctcatg
    15781 ctgaaggcaa atggactggc atgtgtggtg agcttgctgg cgatgaacgt gctacacttc
    15841 tgttgctggg gatgggtctg gacgaattct ctatgagcgc catttctatc ccgcgcatta
    15901 agaagattat ccgtaacacg aacttcgaag atgcgaaggt gttagcagag caggctcttg
    15961 ctcaaccgac aacggacgag ttaatgacgc tggttaacaa gttcattgaa gaaaaaacaa
    16021 tctgctaatc cacgagatgc ggcccaattt actgcttagg agaagatcat gggtttgttc
    16081 gataaactga aatctctggt ttccgacgac aagaaggata ccggaactat tgagatcatt
    16141 gctccgctct ctggcgagat cgtcaatatc gaagacgtgc cggatgtcgt ttttgcggaa
    16201 aaaatcgttg gtgatggtat tgctatcaaa ccaacgggta acaaaatggt cgcgcctgta
    16261 gacggtacca ttggtaaaat ctttgaaacc aatcacgcgt tctctatcga atctgatagc
    16321 ggcgttgaac tgttcgtcca cttcggtatc gacaccgttg aactgaaagg cgaaggcttc
    16381 aagcgtattg cagaagaagg tcagcgcgtg aaagttggcg atactgtcat tgaatttgat
    16441 ctgccgctgc tggaagagaa agccaagtct accctgactc cggttgttat ctccaacatg
    16501 gacgaaatca aagaactgat caaactgccc ggtagcgtaa ccgtgggtga aaccccggtt
    16561 atccgcatca agaagtaatt cttgccgcag tgaaaaatgg cgcccatc
//
LOCUS       DAJVUP010000089        16521 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.089, whole genome shotgun sequence.
ACCESSION   DAJVUP010000089 DAJVUP010000000
VERSION     DAJVUP010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16521
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.089"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            95..2323
                     /gene="crfC"
                     /locus_tag="OQQ75_002602"
     CDS             95..2323
                     /gene="crfC"
                     /locus_tag="OQQ75_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clamp-binding protein CrfC"
                     /protein_id="HCS1976878.1"
                     /translation="MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAAQLAL
                     PWSQPNIAERYAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPM
                     TALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRAL
                     MQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVE
                     FVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD
                     EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS
                     SMWGYLANRARYELANNGKLPAPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQ
                     LWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQ
                     LRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDALNAQLAALFQD
                     DSEPLSEIRTCCETLLQTAQNTISRDFTLRFAELESTLCRVLTDVIRPIEQQVKMELS
                     ESGFRPGFHFPVFHGVVPHVNTRQLFSEVISHQEATDEQSTRLGVVRETFSRWLNQPD
                     WGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFAS
                     CLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHGWIYTDAQLLRDDIQTLFTAE
                     RY"
     gene            2320..3203
                     /locus_tag="OQQ75_002603"
                     /pseudo
     CDS             2320..3203
                     /locus_tag="OQQ75_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418534.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YjcZ-like family protein"
     gene            3467..4969
                     /gene="proP"
                     /locus_tag="OQQ75_002604"
     CDS             3467..4969
                     /gene="proP"
                     /locus_tag="OQQ75_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709830.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline transporter ProP"
                     /protein_id="HCS1976879.1"
                     /translation="MLKRKKVKPITLRDVTIINDSKLRKAITAASLGNAMEWFDFGVY
                     GFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT
                     IVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRK
                     RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR
                     HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYY
                     MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVA
                     LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA
                     FNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGAT
                     PAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE"
     gene            5035..5172
                     /gene="pmrR"
                     /locus_tag="OQQ75_002605"
     CDS             5035..5172
                     /gene="pmrR"
                     /locus_tag="OQQ75_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxT activity modulator PmrR"
                     /protein_id="HCS1976880.1"
                     /translation="MSDAHTLLQVNGGECNEKPCLYESLTTVFSVLVVSSFLYIWFAT
                     F"
     gene            complement(5148..6248)
                     /gene="pmrB"
                     /locus_tag="OQQ75_002606"
     CDS             complement(5148..6248)
                     /gene="pmrB"
                     /locus_tag="OQQ75_002606"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PmrB"
                     /protein_id="HCS1976881.1"
                     /translation="MNLMRFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQI
                     QLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQ
                     KELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTP
                     LAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLE
                     DVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGS
                     NIMIKLQEDGGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQL
                     HHGQFFLQNRQETSGTRAWVRLKKDQNVANQI"
     gene            complement(6249..6917)
                     /gene="basR"
                     /locus_tag="OQQ75_002607"
     CDS             complement(6249..6917)
                     /gene="basR"
                     /locus_tag="OQQ75_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BasR"
                     /protein_id="HCS1976882.1"
                     /translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGH
                     YSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP
                     FALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSR
                     LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYMLVA
                     NEEN"
     gene            complement(6914..8557)
                     /gene="eptA"
                     /locus_tag="OQQ75_002608"
     CDS             complement(6914..8557)
                     /gene="eptA"
                     /locus_tag="OQQ75_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase EptA"
                     /protein_id="HCS1976883.1"
                     /translation="MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDS
                     LHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDR
                     SMIANIIDTTPAESYALMTPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGAN
                     ILVSVLLILLVAALFYKDYASLFRNNKELVKSLSPSNSIVASWSWYSHQRLANLPLVR
                     IGEDAHRNPLMQNEKRKNLTILIVGETSRAENFSLNGYPRETNPRLAKDNVVYFPNTV
                     SCGTATAVSVPCMFSDMPREHYKEELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACD
                     RVPHQNVTALNLPGQCINGECYDEVLFHGLEEYINNLQGDGVIVLHTIGSHGPTYYNR
                     YPPQFRKFTPTCDTNEIQTCTKEQLVNTYDNTLVYVDYIVDKAINLLKEHQDKFTTSL
                     VYLSDHGESLGENGIYLHGLPYAIAPDSQKQVPMLLWLSEDYQKRYQVDQNCLQKQAQ
                     TQHYSQDNLFSTLLGLTGVETKYYQAADDILQTCRRVSK"
     gene            complement(8661..9998)
                     /gene="adiC"
                     /locus_tag="OQQ75_002609"
     CDS             complement(8661..9998)
                     /gene="adiC"
                     /locus_tag="OQQ75_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/agmatine antiporter"
                     /protein_id="HCS1976884.1"
                     /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY
                     GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
                     AMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
                     PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK
                     NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTPGA
                     IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM
                     TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT
                     IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD"
     gene            complement(10135..10896)
                     /gene="adiY"
                     /locus_tag="OQQ75_002610"
     CDS             complement(10135..10896)
                     /gene="adiY"
                     /locus_tag="OQQ75_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator AdiY"
                     /protein_id="HCS1976885.1"
                     /translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI
                     IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA
                     QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH
                     KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ
                     SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA"
     gene            complement(11221..13488)
                     /gene="adiA"
                     /locus_tag="OQQ75_002611"
     CDS             complement(11221..13488)
                     /gene="adiA"
                     /locus_tag="OQQ75_002611"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418541.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HCS1976886.1"
                     /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
                     FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD
                     RDLLELVDEFAWILEDTTDFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP
                     GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
                     GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR
                     NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ
                     DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS
                     QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
                     IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
                     YWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH
                     GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPD
                     TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEITPREAYNAIVDNNVELVSI
                     ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEG
                     TEIIDGIYHAMCVKA"
     gene            complement(13687..14595)
                     /gene="melR"
                     /locus_tag="OQQ75_002612"
     CDS             complement(13687..14595)
                     /gene="melR"
                     /locus_tag="OQQ75_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MelR"
                     /protein_id="HCS1976887.1"
                     /translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH
                     GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL
                     FLSWPLDKDLINHVTHGMMIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM
                     LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVK
                     LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS
                     TFGKYVGMSPQQYRKLSQQRRQTFPG"
     gene            14878..16233
                     /gene="melA"
                     /locus_tag="OQQ75_002613"
     CDS             14878..16233
                     /gene="melA"
                     /locus_tag="OQQ75_002613"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HCS1976888.1"
                     /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT
                     RLEESHIVVRKLMDSAGASGKITCHTQQKEALQDADFVVVAFQIGGYEPCTVTDFEVC
                     KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATLLNYVNPMAMNTWAM
                     YARYPHIKQVGLCHSVQGTAEELARDLNIDPSTLRYRCAGINHMAFYLELERKTADGS
                     YVNLYPELLAAYEAGQAPKPHIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
                     IKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA
                     IWTGESSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN
                     INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLH
                     R"
     gene            16336..>16521
                     /locus_tag="OQQ75_002614"
     CDS             16336..>16521
                     /locus_tag="OQQ75_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1976889.1"
                     /translation="MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
                     GTLFLVARIWDAINDPIM"
BASE COUNT         3988 a         4002 c         4346 g         4185 t
ORIGIN      
        1 tatttcttgc agtaattata aaagccgaaa acagaactca aaaacaatct ggctaaataa
       61 aagtaacaaa atttgcttta aggaagaatt ttctatgtac acacagaccc tgtatgagtt
      121 aagtcaggag gctgaacgcc tgttacagct ttctcgccaa cagttgcagt tactggaaaa
      181 aatgcctctc tctgtacccg gagacgatgc ggcacaactg gctttaccct ggagtcagcc
      241 taatatcgcc gaacgttacg cgatgctgaa taatgagttg cgtaaaattt cccgactgga
      301 aatggtgctg gcgattgtcg gtactatgaa agcagggaaa tcaaccacca ttaatgccat
      361 tgttggtacg gaggttctgc ctaatcgtaa tcgcccaatg actgcgctgc cgacgcttat
      421 tcgccatacg cccgggcaaa aggaaccggt actgcatttt tcacatgtcg cgccaatcga
      481 ttgtttaatt caacaattac aacagcgcct gcgtgattgc gatattaagc atctgaccga
      541 tgtgctggaa atagataaag atatgcgtgc gcttatgcag cggatcgaaa atggcgtcgc
      601 tttcgaaaaa tattatctgg gtgcccagcc tatttttcat tgtctgaaaa gtttgaatga
      661 tttagtgcga ctggcgaagg cgctggacgt cgattttcct ttttctgctt acgccgccat
      721 tgagcatatt cccgtgattg aagtggagtt tgtccatctg gcggggctgg aaagttatcc
      781 cggtcagttg acgttactgg atacccccgg gccaaatgaa gccgggcaac cgcatctgca
      841 aaaaatgctt aaccagcagc tggcacgcgc ctcggcggta ctggcggtgc tggattatac
      901 gcaactgaaa tcgatctccg atgaagaggt ccgtgaggcg attttggcgg tggggcaatc
      961 ggtgccgctg tatgtgctgg tcaataagtt cgatcaacag gatcgtaaca gtgacgacgc
     1021 cgaccaggtg cgggcactga tttccgggac gctgatgaaa ggctgtatta cgccacagca
     1081 gatatttccg gtgtcgtcga tgtggggcta cctggcgaat cgggcgcgct atgagttagc
     1141 caacaacggt aagttaccag cgccagagca acaacgctgg gtggaagatt ttgcccatgc
     1201 cgcgctcggc aggcgctggc gtcatgccga tctggcggac ctcgaacata ttcgtcatgc
     1261 tgccgatcag ttgtgggaag attcgctgtt cgcccagcca attcaggcgt tgcttcatgc
     1321 cgcttacgct aacgcctcat tgtatgctct gcgatctgct gcgcataaac tgttgaatta
     1381 cgcgcagcag gcgcgggaat acctggattt tcgtgcgcac gggttaaacg tcgcttgtga
     1441 acaattgcgg caaaatatcc atcaggtcga agaaagtttg cagctattgc aactcaatca
     1501 ggcgcaggtg agcggcgaga ttaaacatga aatcgagctg gccctgacct ccgccaacca
     1561 ctttctgcgt caacagcaag atgcgctgaa tgcgcagtta gccgccttgt ttcaggatga
     1621 ttcggagccg ttaagcgaga ttcgtacctg ctgtgagaca ctgttacaga cggcgcagaa
     1681 caccatcagt cgcgacttta cgctgcgttt tgccgagctt gaatccaccc tttgccgggt
     1741 gttaaccgat gttattcggc ccattgagca acaagtcaaa atggaattga gcgagtcagg
     1801 gtttcgtcct gggtttcatt ttcctgtttt tcacggagta gttccccacg tcaacactcg
     1861 ccagctgttc agtgaagtca tttcgcacca ggaggcaacg gacgagcaga gcacgcgttt
     1921 aggcgttgtg cgtgagactt tttcgcgctg gttgaatcag cccgactggg gacggggaaa
     1981 tgagaaatcc ccgacagaaa cggttgatta cagtgtgttg caacgagcat taagcgcaga
     2041 agtcgatctt tattgccaac aaatggctaa agttctggca gagcaggtcg atgaatctgt
     2101 tacggcaggc atgaatactt ttttcgctga gttcgcttca tgtttgacgg aattacagac
     2161 gcgtttacgc gaaagcctgg ctctgcgtca acaaaatgaa tcggtggtca ggctgatgca
     2221 gcagcaattg cagcagactg tgatgactca cggctggatt tacaccgacg cccagctgtt
     2281 acgcgatgat attcaaacac ttttcacggc agaacgatat tgaccaagac gttactggac
     2341 ggccccggtc gcgtgctgga gtcggtttat ccccgctttt tagtggatct ggcgcagggc
     2401 gatgatgccc gccttccaca agcccatcag cagcagtttc gtgaacgact gatgcaggaa
     2461 cttctttcgc gtgtgcagct tcagacatgg acgaacggcg gcatgttaaa tgcgccgctt
     2521 agcctgcgac tgacaatggt ggaaaaactg gcgtcgatgc tggatcccgg tcatctggcg
     2581 ctgacgcaga tcgcgcagca tctggcgctg ctgcaaaaaa tggatcaccg ccagcactct
     2641 gctttcccgg agctccccca gcaaattgcc gccttgtatg agtggttttc agcccgttgt
     2701 cgctggaagg aaaaggcgtt aacgcaacga ggccaggcct actggtgcag gcaggtgatc
     2761 agagcgagca aatttttacc cgctggcgtg ctggggcgta taacgcctgg tcgttgcctg
     2821 ggcgctgttt tatcgttctc gaagagttgc gttggggggc atttggcgat gcctgtcgtc
     2881 tgggaagccc gcaagcggtg gcgttgctgc tgggtgattt gcgcgtgaaa gcgacacaac
     2941 atctggcaga gagtatcaat gcggccccga ccacgcgtca ctattaccat cagtggtttg
     3001 cctcttcgac cgttccgacg ggcggggatc atgctgattt tttaagttgg ctgggaaagt
     3061 ggaccacggc agataaacaa cccgtttgct ggtcagtgac ccaacgttgg caaactgtcg
     3121 cgctggggat gccacgactc tgttcagcgc agcgtttggt gggggcaatg gtcgaggaaa
     3181 tcttctctgt aaatttggcg taaataatca gttacatcaa tgagtcctaa acgaaatcca
     3241 tgtgtgaagt tgatcacaaa tttaaatact ggtagggtaa aaaggtcatt aactgcccaa
     3301 ttcaggcgtc aactggtttg attgtacatt ccttaaccgg agggtgtaag caaacccgct
     3361 acgcttgtta cagagattgc atcctgcaat tcccgctccc cttttgcggc cgtcgcgctg
     3421 atttttctgg cgtttgcgga aatgggccaa ctctgcgagg aaagctatgc tgaaaaggaa
     3481 aaaagtaaaa ccgattaccc ttcgtgatgt caccattatt aatgacagta aactgcgtaa
     3541 agccattacc gcagcatcac tgggtaatgc aatggaatgg ttcgattttg gtgtttatgg
     3601 ttttgttgct tacgcattag gtaaagtttt tttcccgggg gctgacccca gcgtgcagat
     3661 ggttgctgca cttgccactt tctccgttcc ctttctgatt cgaccgcttg gcggactctt
     3721 ctttggtatg ttgggcgata aatatggtcg ccagaagatc ctcgctatca ctattgtgat
     3781 tatgtcgatc agtacgttct gtattggctt aataccgtcc tacgacacga ttggtatttg
     3841 ggcaccgatt ctgctgttga tctgtaagat ggcacaaggt ttctcggtcg gcggtgaata
     3901 taccggggcg tcgatatttg ttgcggaata ctcccctgac cgtaaacgtg gctttatggg
     3961 cagctggctg gacttcggtt ctattgccgg gtttgtgctg ggtgcgggcg tggtggtgtt
     4021 aatttcgacc attgtcggcg aagcgaactt cctcgactgg ggctggcgta ttccgttctt
     4081 tattgctctg ccgttaggga ttatcgggct ttacctgcgc catgcgctgg aagaaactcc
     4141 ggcgttccag cagcatgttg ataaactgga acagggcgac cgcgaaggtt tgcaggatgg
     4201 cccgaaagtc tcgtttaaag agattgccac taaatactgg cgcagcctgt tgacatgtat
     4261 tggtctggta attgccacca acgtgactta ctacatgttg ctgacctata tgccgagtta
     4321 tttgtcgcat aacctgcatt actccgaaga ccacggggtg ctgattatta tcgccattat
     4381 gatcggtatg ctgtttgtcc agccggtgat gggcttgctg agtgaccgtt ttggccgtcg
     4441 tccgtttgtg ctacttggta gtgttgccct gtttgtgttg gcgatcccgg cgtttattct
     4501 gattaacagt aacgtcatcg gcctgatttt tgccgggtta ctgatgctgg cggtgatcct
     4561 taactgcttt acgggcgtta tggcttctac cttgccagcg atgttcccga cgcatatccg
     4621 ttacagcgcg ctggcggcgg catttaatat ttcggtgctg gttgccggtc tgacgccaac
     4681 actggcggcc tggctggtcg aaagctcgca gaatctgatg atgcctgcct attacctgat
     4741 ggtagtggcg gtgattggtt taatcaccgg cgtaaccatg aaagagacgg caaatcgtcc
     4801 gttgaaaggt gcgacaccgg cggcgtcaga tatacaggaa gcgaaggaaa ttctcgtcga
     4861 gcattacgat aatatcgagc agaaaatcga taatattgac cacgagattg ccgatttgca
     4921 ggcgaaacgt acccgcctgg tgcagcaaca tccgcgaatt gatgaataag ctgaaacgga
     4981 tggcctgatg tgacgctgtc ttatcaggcc aattgaactc ttaaggttca cttaatctct
     5041 gacgcgcata ctctcctcca ggttaacgga ggagagtgca atgaaaaacc gtgtttatat
     5101 gaaagtttaa ctaccgtgtt cagcgtgctg gtggtcagca gctttcttta tatctggttt
     5161 gccacgttct gatctttctt cagccgtacc caggcccgcg tgccggaagt ctcttgccgg
     5221 ttttgcagga aaaactgccc gtgatgcaac tgtgtaatgc ggctgacaat acttaacccc
     5281 agaccaatcc cgccataacg gctgtccata cgtacaaacg ctttactcaa ctccccgcat
     5341 ttactctcat caatacctgg tccttcatct tcaactgcca tgaccgctcc gccatcttct
     5401 tgcagcttaa tcataatgtt gctgccttgc gggctgtaac gatgggcgtt ttctaccagg
     5461 tttcgcaata acatccgcag cagggttgca tcaccctgaa cggtgatgtc ggcggcgctc
     5521 tctggcaata gcagggtttg ctgtcgctgg tcgagcatgg tactgagttc gtcatacgag
     5581 gggagaatga catcttccag cagttttaca tgttgataat taccggaaga aaatgactgt
     5641 ccggcacgcg ccagttgcag cagctgggag acgctctcca tcatctgatc aagccgtgcc
     5701 actaacggtg ctacatcaat gtgatgcgtt ttcgccagca gttccagatg caaacgcacc
     5761 cccgccagtg gcgttcgcag ttcgtgcgcg acgtcagcgg taaacaacct ttcgttatcc
     5821 agcgtgctgg tcaggcgact gaccagatcg ttcaacgccg aaaccaccgc ttcgatttcg
     5881 agggtggcgc tgtgaatggc aatgggcgtt aagttgtcgg cagtgcgcgc ttccagctct
     5941 ttttgcagct ccgccagcgg gcgggtgatg cggcgtaccg cctgatagca gataaatagc
     6001 gtcaggctga ccataaagac gccggggaca atcaggctgg cgaccgcctc gcggatctca
     6061 cgcatgatgt ggcgatcgtt gttgcgattg tcgcgtagcg cctgctcaaa cagctgaatc
     6121 tgctcggtac tttcatgcca tagccagaag acgctgatca gctcaaacac caacaaaatg
     6181 gccccgatag tcaatatcag ccgttggcgc agcgatattg gtcggcgcag aaaacgcatc
     6241 agattcaatt agttttcctc attcgcgacc agcatatagc caaagccgcg cacggtgcgg
     6301 atacgggatt tgcccacttt gtcgcgcaga ttgtggatat gcacttccag ggtgttggtc
     6361 gagggttcat tgtcccagtt atagatgtcg ttgtagagaa tttcccgatg taccggactg
     6421 cctgctttga gcattaaccg tgacagcaga gcatattctt tgggcgtcag aatcaactct
     6481 tcaccgccca tccatacctg acggcgaccc atattcagcg tcagattgcc aacaatcagc
     6541 tcactttcgc cctgattatt atggcgtcgt agcagggcgc ggatacgggc gtgtaactct
     6601 tccagcgcaa aaggcttcac cagatagtca tcggcaccga catccagccc ggcgattttg
     6661 tcggtcagcg tatcgcgagc ggtgaggatc agtaccggca gggtatattt tttctgccgg
     6721 atacgggcga gaaaatgcag tccatcttcg tcgggtaacc ctaaatccag taccaccagg
     6781 ctgtaatgac cggcttcaag gctttgttcc gccatccgcg cggttgtcac gccatcgcac
     6841 gcgtagcctt cggtttgcgc cgccagaatc agtccctgca ataacagcgt atcgtcttca
     6901 acaatcagaa ttttcattta ctcactctcc tgcaagtttg cagaatatca tccgcagcct
     6961 ggtaatactt cgtctcaacg ccagttaatc ccaatagcgt ggagaataaa ttgtcttgtg
     7021 aatagtgttg cgtttgcgcc tgtttttgca ggcagttctg gtcaacctga taccgttttt
     7081 gataatcctc cgacagccac agcagcatcg gcacctgttt ttggctatcc ggggcgatgg
     7141 cataaggcag accgtgcaga tagatgccat tttcacctaa cgattcaccg tggtcagaaa
     7201 gataaaccag gctggtggta aatttatcct gatgttcttt cagcagatta atcgctttat
     7261 caacaatata gtcgacgtaa accagcgtgt tgtcgtaagt gttcaccagt tgctctttgg
     7321 tacaggtctg gatctcattg gtgtcgcagg ttggggtaaa tttcctgaac tgcggcggat
     7381 agcggttgta ataggtcgga ccgtggctgc cgatggtgtg taagacaatc acgccatcac
     7441 cctgcaggtt attgatgtac tcttccagcc cgtggaacag cacttcgtca tagcattcgc
     7501 cgttgatgca ctgaccaggc agattcagcg cggtgacgtt ctggtgaggc acgcggtcgc
     7561 aggcaccttt acagccgcca tcgttgtcat tccacagcac gttgatgccc gctcgctgaa
     7621 tgatatccag cacgccttcc tggtgctgtg ccagctcttc tttgtaatgc tcacgcggca
     7681 tatccgagaa catgcacggt actgaaactg ccgttgccgt gccgcaagat acggtattag
     7741 ggaaatagac cacgttatct ttcgccagcc gcgggttagt ttcacgcggg tagccgttga
     7801 gggagaagtt ctccgcccgc gaggtttcgc cgacaatcag gatggtcaaa tttttacgtt
     7861 tttcgttctg cattaacggg ttgcggtggg cgtcttcacc aattcgcacc agcggtagat
     7921 ttgccagtcg ctgatgggag taccatgacc agctggcaac aatgctgtta gaggggctta
     7981 aggatttcac cagctctttg ttattgcgga acaacgaggc gtagtcttta taaaacagtg
     8041 cggcgaccag caaaatcagt agtacagaaa ccagaatatt ggctccacgg aaaagaacac
     8101 tgcgcagacg cgaggtggca ggtttgattt ttatccagca ggcaatcagc gcagcaagca
     8161 cgccgctgaa tcccagcgtt aataacattt gcggtgtcat cagcgcataa ctttctgccg
     8221 gagtggtatc aataatattg gcaatcatcg agcggtcgat gacgatgccg taagtcatta
     8281 tgaaatattg tgcagccgcg ccaaccagaa taaacaggca ggccagtggt cgattaagcc
     8341 ataagaaaga gcttagtgtc aggacaatat taatcacgct gaaagcgacg accggcatcg
     8401 acaagaaaac cagtacgtta tgcagcgaat ccagcggcag cgcctgcaac acctgtttaa
     8461 aaaaggcaat attcaggcag atagagatat aaaaagcggc caacaatagc caggcgagta
     8521 aattcaaaga gggtcttttt agtaggcgct tcaacatcac ggtgtttcca tcgaacaaag
     8581 tgcgcatatg ctcgcaaagc aaaattaagc caaccttaag ttcttaaggt tggcttttat
     8641 gtttgctgga ttaaggggaa ttaatctttg cttattggtg catctaaggg atacgggttt
     8701 ttatgtagcc ggttgtaatt cagcgcatac atggcggtga tgaccatcag ggtgacaaat
     8761 gaccacataa cctctttcgc tccggacccc accacggccc agatgcagta gaggaaggca
     8821 atggtagtaa ctgccagata tgccgggcgt gctttaccaa agtgaccgtg tccgagcagc
     8881 agtaacgccg cacaggtgta aagatatggc accagtgtaa agatgaccga gacggaagaa
     8941 accagaccga actctttggt cgcgtttggt gaaatgctgc tgagctggaa gatggtcatc
     9001 aaaataccga cgataatcag ccccgccact ggcgtacccg ctttatttac acgggcaaaa
     9061 atcggtggga acagtccgtc atcggcagcg gctttcgccg tttgacccgc cagcaacgtc
     9121 cagccgccca gtgaacctaa gcaacccgca gctgcgcaga aggaaacaat ggccccgggg
     9181 gtgtcaccca acgccatccg tgcggcatca ccgaatggcg aagcagaaac gcgcagtgcg
     9241 gcattaggga tcatccccat aatcgcggtg gtagaaagta catagcaaac ggcggcaatc
     9301 aataccccac caatggtggc gatagggaca ttgcgtttcg ggtttttcac cacacctgcg
     9361 gcaacggagg cactttccac accgatgaac gaccacagcg taacgttaag ggtactttga
     9421 attgcaccga aggtacccag gccgctgacg ttccatgccg ccatataggt ttcaccacgg
     9481 aaccagaacc agccaaatac ggcaatcccg acgatgggga tcagcgccag cacggtggca
     9541 actgcctgca cacgggtgat cattttcgga ccaacaatgt tcagcaggac gaagatccac
     9601 agcaccacga cgcaggtgat ggttaatacc aatggatctt tcagaatcgg gaagaagtaa
     9661 cttaaatatc ctacgccaat gaccaccatg gcgatattgc cgatccagca ggccagccag
     9721 tagaggacgt tggtttgata accgagaaac gggccaaagc agcggcgggc gtaagcgtaa
     9781 gaaccaccag gacttgggtc gaggaacgac attttggcgt ataccatcga gagccccagt
     9841 gcaccgataa tcgtcaccaa ccatccataa atggcaatcc cgccagtgga ggccaggttt
     9901 gcaggtaaca gaaaaacacc tgaccccata atattccccg acaccatcag ggtgacgggg
     9961 attaagccca ctttgtgagc atcagcatcc gaagacataa ttaaactcct gcgaaggcga
    10021 gcttcgtgac aataaattac gtcatatcat acgcctgcat tcgatagttg aattattatc
    10081 gaccgggtta tcgctgatgc cgttattaat atagctcttc gttaaggtta aaaatcaggc
    10141 gacagtgcgt tctctgtgct gactaacata atgcagcggc gtcataccgt agaagtcttt
    10201 aaagacagaa ataaagtacg acgtactgtt gtagccgcag gactgtgata cctgagagat
    10261 atttttaccg tccatcatta attcatttac ggcataacgc atgcggcagg tggtgattat
    10321 ttggctataa ctggtgtttt cgcttttcag ctttttcttt aacagacttg ggctaagaca
    10381 taaacaactg gctaccatac taagattcca gtctttgtga atatcgcttt caataatttg
    10441 ataaacgctg tcacttacac aattacgtaa catatacatc attaatgaaa ggaatttttt
    10501 actgtcgaga aaacgggata gcaccgtgaa taataatgcg cgtgttcgtt ccttttctga
    10561 ctcagtttct gcgggcatca tgctgtgttg cgcggcaacg cgaaagacgt ctggcgtcag
    10621 gcatggcagg gtgagtatgg gcgtagcgct acgttgccat actggtattt gcgagagatc
    10681 tttattcaga aaccggaggt aatctttgat gatgtcgtga ctaatatgag caaccaaagt
    10741 gttgttaaga gaggagacgt cgataatatt attttcacaa tttaataacg ccatatggtt
    10801 agctttaagg ctaataggtt ctttcccatt cacccttatc cagacatctt tttcagtcaa
    10861 taaaacaata caaggttggt cgctgcaaat cctcatacat gtactcctga gtgcgaataa
    10921 aagaccagtt ctcgctaaag caaagcgata ccgggaaatg gttatataat tgtatgacga
    10981 atataaacat gcataaaaat aacgagtttt actaatatta caaattttta tagtaatttc
    11041 tcatgtacat atttttttac agggtaaata acaggcaaaa aaaagcgcgg ggtggggccg
    11101 cgcaaaaagt atgacatttt tgtttgcagc aatttttatg aaaacgttgc catactcaaa
    11161 aggcctaagg ccaggcggcg taatgttatt taaacaatta cgccttcagc ggaatagtgg
    11221 ttacgctttc acacacatag cgtggtaaat accgtcaata atttcagtcc cttcagtttc
    11281 gtgttcaaat ccagggaaat ggtggtccca ggattgcagc gagcgtaaat aacttacttg
    11341 cggactgttt ttatcgccga agttttcacc agacagcagc atcgggattc ctggcggata
    11401 tgggataact gagtttgccg cgatgcgtcc tggcagattt tcaatggata ccagttcgac
    11461 attgttgtcg acaatcgcgt tgtacgcttc acgcggggtg atttccgcca ccggcaggcc
    11521 ggaataggct tcgttcaacc gtgcgccagg gttgttttct ttcagccagg caaacatggt
    11581 gtcacccaga tcgtgaatcc ccatgttcgc gtaagtgtca ggatattgtt caacaagttc
    11641 cggcatcacc tgcgccagcg gtgtgttggc gtcatagtgg cgtttgaagg agcaaagggt
    11701 gttaaccaga gtcccccatt tcccacgggt tacgcccata gagaacagga acataatttg
    11761 gaagtcagtg gtgcgggtag gcacaatgcc gtggcgacca agccaggcag tgaccagcgc
    11821 cgccggaaca ccggtttctt ccagttcacc atcttcaccc attcccggag caaggatgct
    11881 gactttaatc gggtcgagca tactccagtt atccggaata tctttgaagc cgtgccagct
    11941 ttcgcccgga tgcattaccc agtagtcctg aacggtggtc agcagtttgg ttggtgcgtc
    12001 agcaaagtca taggttttgc cggtttgtgg gtcggtgacg acttctttgt tccacggttt
    12061 gaagaaccag ctaccgtcag cggtgaactc tttatacagc cgcgccatcg cctgacggaa
    12121 atcaaccgct tcgtcgatca cttcctgcgt cagtgacagg ccgctgttgc cgtccatcat
    12181 cgacaccgcc acgtcgttgg atgcgcagat ggcatacagc ggggaggtgg tggcatgcat
    12241 catgtaggcc tggttgaagc gggagaagtt aatcgcccca cgaccttcac gtacatgaat
    12301 ataagaagcc tgtgaaagcg cattcagcag tttgtgggtg gagtgggtgg cgaaaacggt
    12361 aggaccgttg tgatcgccag gttcgccgcg catggcatag tgatcggcat agatcgggtt
    12421 gaaacgtgca tagccgtacc aggcttcgtc aaagtgcaga cgatcggagg ttttttccag
    12481 cagatcctgc gcttctttag cgttataaca cacgccgtca taggtgcagt tggtcaccac
    12541 gcagtaagac ggtttttgcc cggctttgtc tttagtcagc gggctttcac tgattttctt
    12601 ctgcaaggtt tcaggttgca tttcctgcgg atagattggc ccgataatgc cgtagcggtt
    12661 gcggcttggc accatgtaga ccggtttcgc gcctgtcagc atcaagcctt gttcgatgga
    12721 tttatggcag ttacggtcaa cgaccacgac atcgttatcg gtcatgcaag cctgcatgat
    12781 ggtgcggtta gagccggaag taccgacgac taccgaccag gagcgatcgg caccaaatac
    12841 gcgtgcggca tatttttcgc tttcgccaaa tgcgccagta tggtcaagca aagaaccgag
    12901 ggaagttcgt tcgatgccca tatctgtgcg gaacagattt tctccatagt agtcatggta
    12961 gaaacgtccg gcgggtgttt tggtaaaacc aacgccgccc tggtggcctg gcgctgccca
    13021 ggaatattca tggatgtcgc tatacttcat cagcgcgctg aacagtggcg gcaacagctg
    13081 ctggcggtag cgggtcatcg cggcaacggc gcgtccggcg ataaagtcgg tggtatcttc
    13141 cagaatccag gcgaattcat cgacaagctc cagcaggtcg cgatccattg cggcgagggc
    13201 tttttcccga tcgcccaaca ggaagaccgg cacgttttgt tggcgctcat gaagcttacc
    13261 gatcaattgt ctgacgtttt gatgttcgtc cggatgttcc atttgatagc tgaacatcag
    13321 gcagtcaatg gcttcgtttg aagagagaat ggcaaaacca tcatcaaagg aggtggattt
    13381 aatcacggta acattttgct ggcttaaagc atctgccaga cgctcaacgg cgttaccgac
    13441 ccaggtgtct tgatggagaa actcgctttc aacaattaat actttcatca ttgcttaccc
    13501 ggttatgaag gaatcttcgt tgcgggcaag tatcttccgg ccttttcggg ctgtaaagcg
    13561 cgtgaaaaac aaacattttt gaaatattta tttttataaa caatgcgtta tgtgattatt
    13621 ttaaattatt ttcactgctt gttatcgacg gctaaactat ttttttggct gatactgata
    13681 tcgtctttag ccgggaaacg tctggcggcg ctgttggcta agtttgcggt attgttgcgg
    13741 cgacatgccg acatatttgc cgaacgtgct gtaaaaacga ctacttgaac gaaagcctgc
    13801 cgtcagggca atatcgagaa tacttttatc ggtatcgctc agtaacgcgc gaacgtggtt
    13861 gatgcgcatc gcggtaatgt actgtttcat cgtcaattgc atgacccgct ggaatatccc
    13921 cattgcatag ttggcgttaa gtttgacgtg ctcagccaca tcgttgatgg tcagcgcctg
    13981 atcatagttt tcggcaataa agcccagcat ctggctaaca taaaattgcg catggcgcga
    14041 gacgctgttt ttgtgtgtgc gcgaggtttt attgaccaga atcggttccc agccagagag
    14101 gctaaatcgc ttgagcatca ggccaatttc atcaatggcg agctggcgaa tttgctcgtt
    14161 cggactgttt aattcctgct gccagcggcg cacttcaaac gggctaagtt gctgtgtggc
    14221 cagtgatttg atcatcatgc cgtgagtgac gtggttaatc aggtctttat ccagcggcca
    14281 ggagagaaac agatgcatcg gcagattaaa aatcgccatg ctctgacagg ttccggtatc
    14341 tgttagttgg tgcggtgtac aggcccagaa cagcgtgata tgaccctgat tgatattcac
    14401 tttttcattg ttaatcaggt attccacatc gccatcgaaa ggcacattca cttcgacctg
    14461 accatgccag tggctggtgg gcatgatatg cggtgcgcga aactcaatct ccatccgctg
    14521 gtattccgaa tacagcgaca gcgggctgcg ggtctgtttt tcgtcgctgc tgcacataaa
    14581 cgtatctgta ttcatggatg gctctctttc ctggaatatc agaattatgg caggagtgag
    14641 ggaggatgac tgcgagtggg agcacggttt tcaccctctt cccagagagg cgaggggagc
    14701 gtccgagcat catgaggccg aaaactctgc ttttcaggta acttattacc ataaactcag
    14761 atttactgct gcttcacgca ggatctgagt ttatgggaat gctcaacctg gaagccggag
    14821 gttttctgca gattcgcctg ccatgatgaa gttattcaag caagccagga gatctgcatg
    14881 atgactgcac ccaaaattac atttatcggc gctggttcga cgattttcgt taaaaatatt
    14941 cttggtgatg tgttccatcg agaggcgctg aaaacggcgc atattgccct gatggacatt
    15001 gatcccaccc gcctggaaga gtcgcatatt gtggtgcgta agctgatgga ttcagcaggg
    15061 gccagcggca aaatcacctg ccacacccaa cagaaagaag ccttacagga tgccgatttt
    15121 gtcgtggtgg catttcagat tggcggttat gaaccttgca cggtgactga tttcgaggtc
    15181 tgtaagcggc atggtctgga acaaaccatt gccgatacgt tggggccggg cggtattatg
    15241 cgcgcgctac gtaccattcc gcatctgtgg caaatttgcg aggacatgac ggaagtctgc
    15301 cccgatgcca cattgctcaa ctacgttaac ccaatggcga tgaatacctg ggcgatgtat
    15361 gcccgctatc cgcatatcaa acaggtaggg ctgtgccatt cggtgcaggg aacggcggaa
    15421 gagctggcgc gtgacctcaa tatcgatccg tccacgctgc gttaccgttg cgctggtatc
    15481 aaccatatgg cgttttacct ggaactggag cgtaaaaccg ccgacggcag ttacgtgaat
    15541 ctctacccgg aactgctggc ggcttatgaa gcagggcagg caccgaagcc acatattcat
    15601 ggtaatactc gctgccagaa tattgtgcgc tacgaaatgt tcaaaaagct gggctacttc
    15661 gtcacggaat cgtcagaaca ttttgccgaa tatacgccgt ggtttattaa gccaggtcgt
    15721 gaggatttga ttgagcgtta taaagtaccg ctggatgagt acccgaaacg ctgcgtcgag
    15781 cagctggcga actggcataa agagctggag gagtataaaa acgcctcccg gattgatatt
    15841 aaaccgtcac gggaatatgc cagcacaatc atgaacgcta tctggactgg cgagtcgagt
    15901 gtgatttacg gcaacgtccg taacgatggt ttgattgata acctgccaca aggatgttgc
    15961 gtggaagtag cctgtctggt tgatgctaat ggcattcagc cgaccaaagt cggtacgcta
    16021 ccttcgcatc tggccgccct gatgcaaacc aacatcaacg tacagacgct gctgaccgaa
    16081 gctattctta cggaaaatcg cgaccgtgtt taccacgccg cgatgatgga cccgcatact
    16141 gccgccgtgc tgggcattga cgaaatatat gctcttgttg acgacctgat tgccgcccac
    16201 ggcgactggc tgccaggctg gttgcaccgt taaaacgcga ctaaacgcta ctgcgccggg
    16261 ggatttattc cggcgcacac ctctgacgat accaataaca gaaggcgggc gttggtaaca
    16321 gcgacccgat accctatgag catttcaatg actacaaaac tcagttatgg atttggagcg
    16381 ttcgggaagg attttgcgat cggcattgtg tatatgtacc tcatgtatta ctacaccgat
    16441 gtcgttgggc tgtctgtggg tttggtcggt actttgtttc tggtggcgag gatctgggat
    16501 gctattaacg atccgattat g
//
LOCUS       DAJVUP010000090        16479 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.090, whole genome shotgun sequence.
ACCESSION   DAJVUP010000090 DAJVUP010000000
VERSION     DAJVUP010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16479
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.090"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(124..1407)
                     /gene="gltA"
                     /locus_tag="OQQ75_002615"
     CDS             complement(124..1407)
                     /gene="gltA"
                     /locus_tag="OQQ75_002615"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HCS1976890.1"
                     /translation="MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD
                     PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD
                     EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI
                     AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER
                     AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML
                     EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD
                     DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW
                     IAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR"
     gene            complement(1613..1720)
                     /locus_tag="OQQ75_002616"
     CDS             complement(1613..1720)
                     /locus_tag="OQQ75_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976891.1"
                     /translation="MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV"
     gene            2101..2505
                     /gene="sdhC"
                     /locus_tag="OQQ75_002617"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
     CDS             2101..2505
                     /gene="sdhC"
                     /locus_tag="OQQ75_002617"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1976892.1"
                     /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFV
                     AVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFG
                     YLEETFEAGKRSAKISFVITVVLSLLAGVLVW"
     gene            2499..2846
                     /gene="sdhD"
                     /locus_tag="OQQ75_002618"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
     CDS             2499..2846
                     /gene="sdhD"
                     /locus_tag="OQQ75_002618"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase membrane anchor subunit"
                     /protein_id="HCS1976893.1"
                     /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT
                     YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALV
                     VYVIYGFVVVWGV"
     gene            2846..4612
                     /gene="sdhA"
                     /locus_tag="OQQ75_002619"
     CDS             2846..4612
                     /gene="sdhA"
                     /locus_tag="OQQ75_002619"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HCS1976894.1"
                     /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS
                     HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM
                     GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
                     FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN
                     TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY
                     APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS
                     RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV
                     SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN
                     RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT
                     QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM
                     TRRSVNMEPKLRPAFPPKIRTY"
     gene            4628..5344
                     /gene="sdhB"
                     /locus_tag="OQQ75_002620"
     CDS             4628..5344
                     /gene="sdhB"
                     /locus_tag="OQQ75_002620"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit
                     SdhB"
                     /protein_id="HCS1976895.1"
                     /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKE
                     KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD
                     LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
                     SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK
                     GLNPTRAIGHIKSMLLQRNA"
     gene            5645..8446
                     /gene="sucA"
                     /locus_tag="OQQ75_002621"
     CDS             5645..8446
                     /gene="sucA"
                     /locus_tag="OQQ75_002621"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HCS1976896.1"
                     /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST
                     FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR
                     GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEAL
                     KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG
                     AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ
                     DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV
                     RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV
                     GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI
                     DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL
                     YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE
                     AVEMQSRVAKIYSDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF
                     HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW
                     EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL
                     CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT
                     FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM
                     QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY
                     MSVHQKQQQDLVNDALNVE"
     gene            8461..9678
                     /gene="odhB"
                     /locus_tag="OQQ75_002622"
     CDS             8461..9678
                     /gene="odhB"
                     /locus_tag="OQQ75_002622"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HCS1976897.1"
                     /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK
                     VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ
                     QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKSPAKESAP
                     AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK
                     QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP
                     RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS
                     TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLITIK
                     ELLEDPTRLLLDV"
     gene            9954..11120
                     /gene="sucC"
                     /locus_tag="OQQ75_002623"
     CDS             9954..11120
                     /gene="sucC"
                     /locus_tag="OQQ75_002623"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HCS1976898.1"
                     /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV
                     VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT
                     DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQG
                     RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA
                     DGNALFRQLDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKVVLVNIFGGIVRCDLIADGIIG
                     AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK"
     gene            11120..11989
                     /gene="sucD"
                     /locus_tag="OQQ75_002624"
     CDS             11120..11989
                     /gene="sucD"
                     /locus_tag="OQQ75_002624"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HCS1976899.1"
                     /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG
                     GTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT
                     LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE
                     AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA
                     AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS
                     LADIGEALKTVLK"
     gene            complement(12093..12815)
                     /gene="mngR"
                     /locus_tag="OQQ75_002625"
     CDS             complement(12093..12815)
                     /gene="mngR"
                     /locus_tag="OQQ75_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-D-glycerate transport/metabolism system
                     transcriptional repressor MngR"
                     /protein_id="HCS1976900.1"
                     /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV
                     TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF
                     EVIPADDFLQQQLQITAQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS
                     KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEY
                     SRNAFNTDDYKFTLIAQRKSSR"
     gene            12984..14900
                     /gene="mngA"
                     /locus_tag="OQQ75_002626"
     CDS             12984..14900
                     /gene="mngA"
                     /locus_tag="OQQ75_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001393949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS 2-O-a-mannosyl-D-glycerate transporter
                     subunit IIABC"
                     /protein_id="HCS1976901.1"
                     /translation="MNLTTLTHRDALRLNARFTSREEAIHALTQRLAALGKISSTEQF
                     LEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVV
                     LLAIPPNEAGTMHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASF
                     SNAPTIVCVPACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNS
                     ATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDT
                     QPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMY
                     RKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAG
                     YLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNG
                     LSGSNALLLGAIFGFMCSFDLGGPVNKAAYAFCLGAMVNGVYGPYAIFASVKMVSAFT
                     VTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTG
                     AIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRRH
                     AVKHGNYLTDGVMP"
     gene            14918..>16479
                     /locus_tag="OQQ75_002627"
     CDS             14918..>16479
                     /locus_tag="OQQ75_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1976902.1"
                     /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD
                     NEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIV
                     RNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDK
                     TEFLWQSSDGSEVTAQVLPLGYAIGKYLPTDENGLRKRLDSYFDVLEKASVTKEILLP
                     NGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVFEKIEAQRESLATLKGEFIDGK
                     YMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILK
                     NHAHDSIGCCCSDKVHREIVARFELAEDMADNLLRFYMRKIADNMPQSDADKLVLFNL
                     MPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPF
                     MEFDIQINQIVPSMGYRTLYIEANQPGNVIAAKSDAEGILENAFWQIALNEDGSLQLV
                     DKDSGVRYDRVL"
BASE COUNT         3956 a         4135 c         4487 g         3901 t
ORIGIN      
        1 ttttagaata tatgaatgtc cgatagtgga ttttattttt acaatttttt gtgtttaggc
       61 atataaaaat taacccgcca tttgaacggc gggttaaaat atttacaact tagcaatcaa
      121 ccattaacgc ttgatatcgc ttttaaagtc gcgtttttca tatcctgtat acagctgacg
      181 cggacgggca atcttcatac cgtcactgtg catttcgctc cagtgggcga tccagccaac
      241 ggtacgtgcc attgcgaaaa tgacggtgaa catggaagac ggaataccca tcgctttcag
      301 gatgatacca gagtagaaat cgacgttcgg gtacagtttc ttctcgataa agtacgggtc
      361 gttcagcgcg atgttttcca gctccatagc cacttccagc aggtcatctt tggtgcccag
      421 ctctttcaga acttcatggc aggtttcacg cattacggtg gcgcgcgggt cgtaattttt
      481 gtacacgcgg tgaccgaagc ccatcaggcg gaaagaatca tttttatctt tcgcacgacg
      541 aacaaattcc ggaatgtgtt taacggagct aatttcttcc agcattttca gcgccgcttc
      601 gttagcacca ccgtgcgcag gtccccacag tgaagcaata cctgctgcga tacaggcaaa
      661 cgggttcgca cccgaagagc cagcggtacg cacggtggag gtagaggcgt tctgttcatg
      721 gtcagcgtgc aggatcagaa tacggtccat agcacgttcc agaatcggat taacttcata
      781 cggttcgcac ggcgtggaga acatcatatt caggaagtta ccggcatagg agagatcgtt
      841 gcgcggataa acaaatggct gaccaatgga atacttgtaa cacatcgcgg ccatggtcgg
      901 cattttcgac agcaggcgga acgcggcaat ttcacgatga cgaggattgt taacatccag
      961 cgagtcgtga tagaacgccg ccagcgcgcc ggtaatacca cacatgactg ccattggatg
     1021 tgagtcgcga cggaaagcgt ggaacagacg ggtaatctgc tcgtggatca tggtatgacg
     1081 ggtcaccgta gttttaaatt cgtcatactg ttcctgagtc ggtttttcac cattcagcag
     1141 gatgtaacaa acttccaggt agttagaatc ggtcgccagc tgatcgatcg ggaaaccgcg
     1201 gtgcagcaaa ataccttcat caccatcaat aaaagtaatt ttagattcgc aggatgcggt
     1261 tgaagtgaag cctgggtcaa aggtgaacac accttttgaa ccgagagtac ggatatcaat
     1321 aacatcttga cccagcgtgc ctttcagcac atccagttca acagctgtgt ccccgttgag
     1381 ggtgagtttt gcttttgtat cagccattta aggtctcctt agcgccttat tgcgtaagac
     1441 tgccggaact taaatttgcc ttcgcacatc aacctggctt tacccgtttg ttatttggct
     1501 cgccgctctg tgaaagaggg gaaaacctgg gtacagagct ctgggcgctt gcaggtaaag
     1561 gatccattga tgacgaataa atggcgaatc aagtacttag caatccgaat tattaaactt
     1621 gtctaccact aataactgtc ccgaatgaat tggtcaatac ttccacactg ttacataagt
     1681 taatcttagg tgaaataccg acttcataac ttttacgcat tatatgcttt tcctggtaat
     1741 gtttgtaaca actttgttga gtgattgtca aattagatga ttaaaaatta aataaatgtt
     1801 gttgtcgtga cctggatcac tgttcaggat aaaacccgac aaactatatg taggttaatt
     1861 gtaatgattt tgtgaacagc ctatactgcc gccaggtctc cggaacaccc tgcaatcccg
     1921 agccacccag cgttgtaacg tgtcgttttc gcatctggaa gcagtgtttt gcatgacgcg
     1981 cagttataga aaggacgctg tctgacccgc aagcagaccg gaggaaggaa atcccgacgt
     2041 ctccaggtaa cagaaagtta acctctgtgc ccgtagtccc cagggaataa taagaacagc
     2101 atgtgggcgt tattcatgat aagaaatgtg aaaaaacaaa gacctgttaa tctggaccta
     2161 cagaccatcc ggttccccat cacggcgata gcgtccattc tccatcgcgt ttccggtgtg
     2221 atcacctttg ttgcagtggg catcctgctg tggcttctgg gtaccagcct ctcttcccct
     2281 gaaggtttcg agcaagcttc cgcgattatg ggcagcttct tcgtcaaatt tatcatgtgg
     2341 ggcatcctta ccgctctggc gtatcacgtc gtcgtaggta ttcgccacat gatgatggat
     2401 tttggctatc tggaagaaac attcgaagcg ggtaaacgct ccgccaaaat ctcctttgtt
     2461 attactgtcg tgctttcact tctcgcagga gtcctcgtat ggtaagcaac gcctccgcat
     2521 taggacgcaa tggcgtacat gatttcatcc tcgttcgcgc taccgctatc gtcctgacgc
     2581 tctacatcat ttatatggtc ggttttttcg ccaccagtgg cgaactgaca tatgaagtct
     2641 ggatcggttt cttcgcctct gcgttcacca aagtgttcac cctgctggcg ctgttttcta
     2701 tcttgattca tgcctggatc ggcatgtggc aggtgttgac cgactacgtt aaaccgctgg
     2761 cattgcgcct gatgctgcaa ctggtgattg tcgttgcact ggtggtttac gtgatttatg
     2821 gattcgttgt ggtgtggggt gtgtgatgaa attgccagtc agagaatttg atgcagttgt
     2881 gattggtgcc ggtggcgcag gtatgcgcgc ggcgctgcaa atttcccaga gcggccagac
     2941 ctgtgcgctg ctctctaaag tcttcccgac ccgttcccat accgtttctg cgcaaggcgg
     3001 cattaccgtt gcgctgggta atacccatga agataactgg gaatggcata tgtacgacac
     3061 cgtaaaaggg tcggactata tcggtgacca ggacgcgatt gaatatatgt gtaaaaccgg
     3121 gccggaagcg attctggaac tcgaacacat gggcctgccg ttctcgcgtc ttgatgatgg
     3181 tcgtatctat caacgtccgt ttggcggtca gtcgaaaaac ttcggcggcg agcaggcggc
     3241 acgcactgcg gcggcggctg accgtaccgg tcacgcactg ttgcacacgc tttatcagca
     3301 gaacctgaaa aaccacacca ccattttctc cgagtggtat gcgctggatc tggtgaagaa
     3361 ccaggatggc gcggtggtgg gttgtactgc actgtgcatc gaaactggtg aagtggttta
     3421 tttcaaagcc cgcgctaccg tgctggcgac tggcggggca gggcgtattt atcagtccac
     3481 cactaacgcc cacattaaca ctggcgacgg cgtcggcatg gctatccgcg caggcgtacc
     3541 ggtgcaggat atggaaatgt ggcagttcca cccgaccggt attgccggtg cgggcgtact
     3601 ggtcaccgaa ggttgccgtg gtgaaggcgg ttatctgctg aacaaacatg gcgaacgctt
     3661 tatggagcgt tatgcgccga acgccaaaga cctggcgggc cgtgatgtgg tggcgcgttc
     3721 catcatgatc gaaatccgtg aaggtcgcgg ctgtgatggt ccgtgggggc cacacgcgaa
     3781 actgaaactc gaccacctgg gtaaagaagt tctcgaatcc cgtctgccgg gcatcctgga
     3841 actctcccgt accttcgctc acgtcgatcc ggtgaaagag ccgatcccgg ttatcccaac
     3901 ctgtcattac atgatgggcg gtattccgac caaagtgacc ggtcaggcgc tgactgtgaa
     3961 tgagaaaggc gaagatgtgg ttgttccggg actgtttgcc gttggtgaaa tcgcttgtgt
     4021 atcggtacac ggcgctaacc gtctgggcgg caactcgctg ctggacctgg tggtctttgg
     4081 tcgtgcggca ggtctgcatc tgcaagagtc tatcgccgag cagggcgcat tgcgcgatgc
     4141 cagcgagtct gatgttgaag catctctgga tcgtctgaac cgctggaaca ataatcgtaa
     4201 cggtgaagat ccggtggcga ttcgtaaagc gctgcaagaa tgtatgcagc ataacttctc
     4261 ggtcttccgt gaaggtgatg cgatggcgaa agggcttgag cagttgaaag ttatccgcga
     4321 gcgtctgaaa aatgcccgtc tggatgacac ttccagcgag ttcaacaccc agcgcgttga
     4381 gtgcctggaa ctggataacc tgatggaaac ggcgtatgca acggctgttt ctgccaactt
     4441 ccgtaccgaa agccgtggcg cgcatagccg cttcgacttc ccggatcgtg atgatgaaaa
     4501 ctggctgtgc cactccctgt atctgccaga gtcggaatcc atgacgcgcc gaagcgtcaa
     4561 catggaaccg aaactgcgcc cggcattccc gccgaagatt cgtacttact aatgcggaga
     4621 caggaaaatg agactcgagt tttcaattta tcgctataac ccggatgttg atgatgctcc
     4681 gcgtatgcag gattacaccc tggaagcgga agaaggtcgc gacatgatgc tgctggatgc
     4741 gcttatccag ctgaaagaga aagatcccag cctgtcgttc cgccgctcct gtcgtgaagg
     4801 tgtgtgcggt tccgacggtc tgaacatgaa cggcaagaat ggtctggcct gtattacccc
     4861 gatttcggca ctcaaccagc cgggcaagaa gattgtgatt cgcccgctgc caggtttacc
     4921 ggtgatccgc gatttggtgg tagacatggg acaattctat gcgcaatatg agaaaattaa
     4981 gccttacctg ttgaataatg gacaaaatcc gccagctcgc gagcatttac agatgccaga
     5041 gcagcgcgaa aaactcgacg ggctgtatga atgtattctc tgcgcatgtt gttcaacctc
     5101 ttgtccgtct ttctggtgga atcccgataa gtttatcggc ccggcaggct tgttagcggc
     5161 atatcgtttc ctgatcgata gccgtgatac cgagactgac agccgcctcg acggtttgag
     5221 cgatgcattc agcgtattcc gctgtcacag catcatgaac tgcgtcagtg tatgtccgaa
     5281 ggggctgaac ccgacgcgcg ccatcggcca tatcaagtcg atgttgttgc aacgtaatgc
     5341 gtaaaccgta ggcctgataa gacgcgcaag cgtcgcatca ggcaaccagt gccggatgcg
     5401 gcgtgaacgc cttatccggc ctacaagtca ttacccgtag gcctgataag cgcagcgcat
     5461 caggcgtaac aaagaaatgc aggaaatctt taaaaactgc ccctgacact aagacagttt
     5521 ttaaaggttc cttcgcgagc cactacgtag acaagagctc gcaagtgaac cccggcacgc
     5581 acatcactgt gcgtggtagt atccacggcg aagtaagcat aaaaaagatg cttaagggat
     5641 cacgatgcag aacagcgctt tgaaagcctg gttggactct tcttacctct ctggcgcaaa
     5701 ccagagctgg atagaacagc tctatgaaga cttcttaacc gatcctgact cggttgacgc
     5761 taactggcgt tcgacgttcc agcagttacc tggtacggga gtcaaaccgg atcaattcca
     5821 ctctcaaacg cgtgaatatt tccgccgcct ggcgaaagac gcttcacgtt actcttcaac
     5881 gatctccgac cctgacacca atgtgaagca ggttaaagtc ctgcagctca ttaacgcata
     5941 ccgcttccgt ggtcaccagc atgcgaatct cgatccgctg ggactgtggc agcaagataa
     6001 agtggccgat ctggatccgt ctttccacga tctgaccgaa gcagacttcc aggaaacctt
     6061 caacgtcggt tcatttgcca gcggcaaaga aaccatgaaa ctcggcgagc tgctggaagc
     6121 cctcaagcaa acctactgcg gcccgattgg tgccgagtat atgcacatca ccagcaccga
     6181 agaaaaacgc tggatccaac agcgtatcga gtctggtcgc gcgactttca atagcgaaga
     6241 gaaaaaacgc ttcttaagcg aactgaccgc cgctgaaggc cttgaacgtt acctcggcgc
     6301 aaaattccct ggcgcaaaac gcttctcgct ggaaggcggt gacgcgttaa tcccgatgct
     6361 taaagagatg atccgccacg ctggcaacag cggcacccgc gaagtggttc tcgggatggc
     6421 gcaccgtggt cgtctgaacg tgctggtgaa cgtgctgggt aaaaaaccgc aagacttgtt
     6481 cgacgagttc gccggtaaac ataaagaaca cctcggcacg ggtgacgtga aataccacat
     6541 gggcttctcg tctgacttcc agaccgatgg cggcctggtg cacctggcgc tggcgtttaa
     6601 cccgtctcac cttgagattg taagcccggt agttatcggt tctgttcgtg cccgtctgga
     6661 cagacttgat gagccgagca gcaacaaagt gctgccaatc accatccacg gtgacgccgc
     6721 agtgaccggg cagggcgtgg ttcaggaaac cctgaacatg tcgaaagcgc gtggttatga
     6781 agttggcggt acggtacgta tcgttatcaa caaccaggtt ggtttcacca cctctaatcc
     6841 gctggatgcc cgttctacgc cgtactgtac tgatatcggt aagatggttc aggccccgat
     6901 tttccacgtt aacgcggacg atccggaagc cgttgccttt gtgacccgtc tggcgctcga
     6961 tttccgtaac acctttaaac gtgatgtctt catcgacctg gtgtgctacc gccgtcacgg
     7021 ccacaacgaa gccgacgagc cgagcgcaac ccagccgctg atgtatcaga aaatcaaaaa
     7081 acatccgaca ccgcgcaaaa tctacgctga caagctggag caggaaaaag tggcgacgct
     7141 ggaagatgcc accgagatgg ttaacctgta ccgcgatgcg ctggatgctg gcgattgcgt
     7201 agtggcagag tggcgtccga tgaacatgca ctctttcacc tggtcgccgt acctcaacca
     7261 cgaatgggac gaagagtacc cgaacaaagt tgagatgaag cgcctgcagg agctggcgaa
     7321 acgcatcagc acggtgccgg aagcagttga aatgcagtct cgcgttgcca agatttatag
     7381 cgatcgccag gcgatggctg ccggtgagaa actgttcgac tggggcggtg cggaaaacct
     7441 cgcttacgcc acgctggttg acgaaggcat tccggttcgc ctgtcgggtg aagactccgg
     7501 tcgcggtacc ttcttccacc gccacgcggt gatccacaac cagtctaacg gttccactta
     7561 cacgccgctg caacacatcc ataacgggca gggcgcgttc cgcgtctggg actccgtact
     7621 gtctgaagaa gcagtgctgg cgtttgaata cggttatgcc accgcagaac cacgcactct
     7681 gaccatctgg gaagcgcagt tcggtgactt cgctaacggt gctcaggtgg ttatcgacca
     7741 gttcatctcc tctggcgaac agaaatgggg ccggatgtgt ggtctggtga tgttgctgcc
     7801 gcacggttat gaagggcagg ggccggagca ctcctccgcg cgtctggaac gttatctgca
     7861 actttgtgct gagcaaaaca tgcaggtgtg cgtaccgtct accccggcac aggtttacca
     7921 catgctgcgt cgtcaggcgc tgcgcgggat gcgtcgtccg ctggtcgtga tgtcgccgaa
     7981 atccctgctg cgtcatccgc tggcggtttc cagcctcgaa gaactggcga acggcacctt
     8041 cctgccagcc atcggtgaaa tcgacgagct tgatccgaag ggcgtgaagc gcgtagtgat
     8101 gtgttctggt aaggtttatt acgacctgct ggaacagcgt cgtaagaaca atcaacacga
     8161 tgtcgccatt gtgcgtatcg agcaactcta cccgttcccg cataaagcga tgcaggaagt
     8221 gttgcagcag tttgctcacg tcaaggattt tgtctggtgc caggaagagc cgctcaacca
     8281 gggcgcatgg tactgcagcc agcatcattt ccgtgaagtg attccgtttg gggcttctct
     8341 gcgttatgca ggccgcccgg cctccgcctc tccggcggta gggtatatgt ccgttcacca
     8401 gaaacagcaa caagatctgg ttaatgacgc gctgaacgtc gaataaataa aggatacaca
     8461 atgagtagcg tagatattct ggtccctgac ctgcctgaat ccgtagccga tgccaccgtc
     8521 gcaacctggc ataaaaaacc cggcgacgca gtcgtacgtg atgaagtgct ggtagaaatc
     8581 gaaactgaca aagtggtact ggaagtaccg gcatcagcag acggcattct ggatgcggtt
     8641 ctggaagatg aaggtacaac cgtaacgtct cgtcagatcc ttggtcgcct gcgtgaaggc
     8701 aacagcgccg gtaaagaaac cagcgccaaa tctgaagaga aagcgtccac tccggcgcaa
     8761 cgccagcagg cgtctctgga agagcaaaac aacgatgcgt taagcccggc gatccgtcgc
     8821 ttgctggctg aacataacct cgacgccagc gctattaaag gcaccggcgt gggtggtcgt
     8881 ctgacccgtg aagatgtgga aaaacatctg gcgaaatccc cggcgaaaga gtctgcaccg
     8941 gcagcggctg ctccggcggc gcaaccggct ctggctgcac gtagtgaaaa acgtgtcccg
     9001 atgactcgcc tgcgtaagcg tgtggcagag cgtctgctgg aagcgaaaaa ctccaccgcc
     9061 atgctgacca cgttcaacga agtcaacatg aagccgatta tggatctgcg taagcagtac
     9121 ggtgaagcgt ttgaaaaacg ccacggcatc cgtctgggct ttatgtcctt ctacgtgaaa
     9181 gcggtggttg aagccctgaa acgttacccg gaagtgaatg cttctatcga cggcgatgac
     9241 gtggtttacc acaactattt cgacgtcagc atggcggttt ctacgccgcg cggcctggtg
     9301 acgccggttc tgcgtgatgt cgataccctc ggcatggcag acatcgagaa gaaaatcaaa
     9361 gagctggcag tcaaaggccg tgatggcaag ctgaccgttg aagatctgac cggtggtaac
     9421 ttcaccatca ccaacggtgg tgtgttcggt tccctgatgt ctacgccgat catcaacccg
     9481 ccgcagagcg caattctggg tatgcacgct atcaaagatc gtccgatggc ggtgaatggt
     9541 caggttgaga tcctgccgat gatgtacctg gcgctgtcct acgatcaccg tctgatcgat
     9601 ggtcgcgaat ccgtgggctt cctgataacg atcaaagagt tgctggaaga tccgacgcgt
     9661 ctgctgctgg acgtgtagta gtttaagttt cacctgcact gtagacagga taaggcatta
     9721 tcgccttctc cggcaattga agcctgatgc gacgcttaac gcgtcttatc aggcctacgg
     9781 gaagcaccaa tgtaggtcgg ataaggcgct tgcgccgcat ccgacaagcg atgcctgatg
     9841 cgacacttac gcgtcttatc aggcctacag gtgaccgaca atgcccggag gcgatacgaa
     9901 atattcggtc tacggtttaa aagataacga ttactgaagg atggacagaa cacatgaact
     9961 tacatgaata tcaggcaaaa caactttttg cccgctatgg cttaccagca ccggtgggtt
    10021 atgcctgtac tactccgcgc gaagcagaag aagccgcttc aaaaatcggt gccggtccgt
    10081 gggtagtgaa atgtcaggtt cacgctggtg gccgcggtaa agcgggcggt gtgaaagttg
    10141 taaacagcaa agaagacatc cgtgcttttg cagaaaattg gctcggcaag cgtctggtaa
    10201 cgtatcaaac agatgccaat ggccaaccgg ttaaccagat tctggttgaa gcagcgaccg
    10261 atatcgctaa agagctgtat ctcggtgccg ttgtagaccg tagttcccgt cgtgtggtct
    10321 ttatggcctc cactgaaggc ggcgtggaaa tcgaaaaagt ggcggaagaa actccgcagc
    10381 tgatccataa agttgcgctt gatccgctga caggcccgat gccgtatcag ggacgcgagc
    10441 tggcgttcaa actgggtctg gaaggtaaac tggttcagca gttcaccaaa atcttcatgg
    10501 gtctggcgac cattttcctg gagcgcgacc tggcgttgat cgaaatcaac ccgctggtca
    10561 tcaccaaaca gggtgatctg atttgcctcg acggcaaact gggcgctgat ggcaacgcac
    10621 tgttccgcca gcttgatctg cgcgaaatgc gtgaccagtc gcaggaagat ccgcgtgaag
    10681 cacaggctgc acagtgggaa ctgaactacg ttgcgctgga cggtaacatc ggttgtatgg
    10741 ttaacggcgc aggtctggcg atgggtacga tggacatcgt taaactgcac ggcggcgaac
    10801 cggctaactt ccttgacgtt ggcggcggtg caaccaaaga acgtgtaacc gaagcgttca
    10861 aaatcatcct ctctgacgac aaagtgaaag tcgttctggt taacatcttc ggcggtatcg
    10921 ttcgttgcga cctgatcgct gacggtatca tcggcgcggt agcagaagtg ggtgttaacg
    10981 taccggtcgt ggtacgtctg gaaggtaaca acgccgaact cggcgcgaag aaactggctg
    11041 acagcggcct gaatattatt gcagcaaaag gtctgacgga tgcagctcag caggttgttg
    11101 ccgcagtgga ggggaaataa tgtccatttt aattgataaa aacaccaagg ttatctgcca
    11161 gggctttact ggtagccagg ggactttcca ctcagaacag gccattgcat acggcactaa
    11221 aatggttggc ggcgtaaccc caggtaaagg cggtactacc cacctcggcc tgccggtgtt
    11281 caacaccgtg cgtgaagctg ttgctgctac tggcgctacc gcttctgtta tctacgtacc
    11341 agcaccgttc tgcaaagact ccattctgga agctattgat gcaggcatca aactgattat
    11401 caccatcact gaaggcatcc cgacgctgga tatgctgact gtgaaagtga aactggacga
    11461 agccggcgtt cgtatgatcg gcccgaactg cccgggcgtt atcactccgg gtgaatgcaa
    11521 aatcggtatc cagccgggtc acattcacaa accgggtaaa gtgggtatcg tttcccgttc
    11581 cggtacactg acctatgaag cggttaaaca gaccacggat tacggtttcg gtcagtcgac
    11641 ctgtgttggt atcggcggtg acccgatccc aggctctaac tttatcgaca tcctcgaaat
    11701 gttcgaaaaa gatccgcaga ccgaagcgat cgtgatgatc ggtgagatcg gcggtagcgc
    11761 tgaagaagaa gcggcagcgt acatcaaaga gcacgttacc aagccagttg taggttacat
    11821 cgctggtgtg actgcgccga aaggcaaacg tatgggccac gcgggtgcga tcattgccgg
    11881 tgggaaaggg actgcggatg agaaattcgc tgctctggaa gccgcaggcg tgaaaaccgt
    11941 tcgcagcctg gcggatatcg gtgaagcact gaaaactgtt ctgaaataaa tatctgtaat
    12001 aagaaatagc cctcgccgct tccctctaca ggaatggcga agggctgtcg gtttcgacat
    12061 ggttggccat cgtatgatgg ccttttttgt gcttatcgcg atgattttcg ctgcgctatc
    12121 agggtaaatt tatagtcatc ggtattaaaa gcgttgcggc tatattcaaa cacccgacca
    12181 tcaactaaat atccacgcga tactttttca agaatcggct ttgtctggct gatattaagc
    12241 agacggctca tctcttcggt tggcatcaga ggaatgattt cctgttcgct acgatcgata
    12301 accatcttct tcacttcttc aataaagtga tatttcgaat tttccatgac ctgccaggtg
    12361 agatccggga acaacgcaag cggcatccag gtttcttcca gcgccattgg cttttgcttg
    12421 cgatagcgca cgcgcttcac atgccacaca cgatcctgcg cggtgatttg tagctgttgc
    12481 tgaagaaaat cgtcagccgg aatcacttca aatatcagga cttcactgtg tgtatcgacg
    12541 tgacggtccg acagtttttc atcaaaactg gttaactgaa aaatatcgta attgacccgc
    12601 tcttctttga cgtaagtccc gctgccctga atgctttcga ggatctgctg ctcgactagc
    12661 tggcgcaaag cctgacgcac cgtaacccgg ctgacgccaa actctgtttg tagcgctgat
    12721 tcagtgggta acgcatcgcc aggtttaagc tcgccacgcg caatttgttc acgaatgcga
    12781 tcggcaatct gccggtataa gggcttgtgt cccattttta gtatctcatt aatacgaatt
    12841 tagccattat gcccgataaa ttcatcctgt aaataatgca aatacaatac aaataatttc
    12901 aatcaagtga aattgatcat ataatggtat tgttttatcg ggcacactgg cgcgactata
    12961 aaaacgatca agtgaggatc atgatgaatc tgacgactct gacccaccgc gatgcgttgc
    13021 gtctgaatgc gcgctttacc agccgtgaag aggccatcca cgcgttgact caacgtcttg
    13081 ctgctctggg gaaaatttcc agtactgagc aatttctgga agaagtgtat cgccgtgaaa
    13141 gccttggccc gaccgcctta ggtgaagggt tggctgtgcc gcatggcaaa actgctgcgg
    13201 taaaagaagc ggcgtttgcg gtcgccacac tcagcgagcc gcttcagtgg gaaggcgttg
    13261 atggcccgga agcagttgat ttagtggtgc tgctggcgat tccccccaat gaagcgggta
    13321 ctatgcatat gcaactgctg acagcgctga ccacgcgcct tgcggatgat gagattcggg
    13381 cgcgtataca gtcggcgacg acgcctgatg agttgctctc ggcgctggat gacaagggag
    13441 gcacgcaacc ttctgcctct ttttccaacg cgccaactat cgtctgcgta ccggcctgtc
    13501 cggcgggtat tgctcacacc tatatggctg cggaatatct ggaaaaagcc ggacgcaaac
    13561 tcggcgtaaa tgtttacgtt gaaaaacaag gcgctaacgg cattgaaggg cgtttaacgg
    13621 cggatcaact caatagtgca accgcctgta tttttgcggc tgaagtcgcc atcaaggaga
    13681 gtgagcgttt taatggcatt cccgcgcttt cagtgcctgt tgccgagccg attcgccatg
    13741 cagaagcgtt gatccaacaa gcgcttaccc tcaagcgtag cgatgagacg cgtaccgtac
    13801 agcaagatac gcaaccggtg aaaagtgtca aaacggagct gaaacaggca ctgttgagcg
    13861 gaatctcttt tgccgtaccg ttgattgtcg cggggggcac ggtgctggcg gtcgcggtat
    13921 tactgtcgca aatcttcggg ctacaagatc tgtttaatga agaaaactcc tggctgtgga
    13981 tgtaccgcaa gctgggcggc gggctgctcg gaattttgat ggtaccggtg ctcgcggcct
    14041 ataccgccta ttctctggca gataaaccgg cgttagcgcc aggctttgcg gctggacttg
    14101 ccgccaacat gatcggctcc gggtttctcg gcgcggtcgt tggcggattg atagccggtt
    14161 acttgatgcg ctgggtgaaa aatcacttgc gtcttagcag taaattcaat ggattcctga
    14221 ctttttatct ctacccggtg ctcggtacgt tgggagcggg cagtctgatg ctgtttgtgg
    14281 tgggagaacc tgtcgcatgg atcaataact cgcttaccgc ctggctgaac ggtctgtcag
    14341 gaagtaacgc gctgttgctg ggtgccattt tcggttttat gtgttccttt gatcttggag
    14401 ggccagtgaa caaagccgct tatgcattct gcctgggcgc aatggtgaac ggcgtttacg
    14461 gcccgtatgc cattttcgcc tccgtcaaaa tggtttcggc atttaccgta accgcttcca
    14521 cgatgctcgc accgcgcctg tttaaagagt ttgaaattga gaccgggaaa tccacctggc
    14581 tgttagggct ggcaggtatt accgaagggg cgatcccgat ggcgattgaa gatccgctgc
    14641 gggttattgg ttcgtttgtg ctgggctcta tggtaacggg cgctattgtc ggtgcgatga
    14701 atatcggcct ttcgacaccc ggtgccggca ttttctcgct ctttttactt catgataatg
    14761 gcgcgggcgg tgttatggcg gcaattggct ggtttggtgc ggcattggtg ggggctgcaa
    14821 tctcgactgc aattctcctg atctggcggc gtcacgcggt taagcatggc aactatctga
    14881 ctgatggcgt aatgccataa acaaaaagga aacgacgatg aaagcggtat ctcgcgttca
    14941 catcaccccg catatgcact gggatcgaga gtggtatttc accaccgaag agtcacgtat
    15001 tctgctggtc aataatatgg aagagatcct gtgccgactg gaacaggaca acgaatacaa
    15061 atattacgta ctcgacgggc aaacggcgat cctcgaagat tatttcgcgg tgaaaccgga
    15121 aaacaaagac cgtgtgaaga aacaggtaga agccggcaag ttgattatcg gcccctggta
    15181 tacccagacc gataccacga ttgtttctgc ggaatccatc gtccgtaatc tgatgtacgg
    15241 aatgcgtgac tgcctcgcgt ttggcgagcc gatgaaaata ggttatttac cagattcctt
    15301 tggcatgtcc gggcaactgc cgcatatcta caatggattt ggcattaccc gcaccatgtt
    15361 ctggcgcgga tgttcggagc gccacggtac tgataaaacc gagtttttgt ggcaaagcag
    15421 tgacggtagc gaagtgacgg cgcaggtgct gccgctgggc tacgccatag gtaagtactt
    15481 acctaccgac gaaaacggat tacgtaaacg cctcgacagt tattttgacg tgctggaaaa
    15541 agcgtctgta accaaagaga ttttgctgcc gaatggtcat gaccagatgc cattgcagca
    15601 aaatatcttc gaagtgatgg ataagctacg tgagatctac cctcaacgta agtttgtgat
    15661 gagccgcttt gaagaggtat ttgagaagat cgaagcgcag cgtgaaagtc tggccaccct
    15721 gaaaggtgaa tttatcgatg gcaaatatat gcgcgtacat cgcaccatcg gttccacgcg
    15781 catggatatc aaaattgccc acgcacgtat tgaaaataag attgttaatc tgctggaacc
    15841 gctggcaacg ctggcctgga cgttgggttt tgaataccac cacggcttgc tggagaaaat
    15901 gtggaaagag atcttaaaaa atcatgccca cgacagtatc ggttgttgtt gcagtgacaa
    15961 agttcatcgc gaaattgtcg cccgcttcga actggctgaa gacatggcgg ataatctgct
    16021 gcgtttctac atgcgcaaaa ttgccgataa catgccacag agtgatgccg acaaactcgt
    16081 gctgtttaac ctgatgccct ggccgcggga agaagttatt aacaccactg tgcggctgcg
    16141 cgccagccag tttaatctac gagacgatcg cggtcagcct gtaccgtatt ttattcgcca
    16201 tgcccgtgag atcgatccag gcctaatcga tcggcaaata gttcattacg gtaattacga
    16261 tccctttatg gagtttgata tacagatcaa ccagattgtc ccttctatgg gctatcgcac
    16321 gctttatatc gaagcgaatc agcctggcaa cgtgattgcg gcaaaaagtg acgctgaagg
    16381 gatactggaa aatgctttct ggcaaattgc gctcaatgag gatggttctc tgcaactggt
    16441 agataaagac agcggtgtgc gctatgaccg agtattgca
//
LOCUS       DAJVUP010000091        16381 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.091, whole genome shotgun sequence.
ACCESSION   DAJVUP010000091 DAJVUP010000000
VERSION     DAJVUP010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16381
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.091"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..190
                     /locus_tag="OQQ75_002628"
     CDS             <1..190
                     /locus_tag="OQQ75_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001402762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976903.1"
                     /translation="DMLNPTKDTNWNSTCIYKSRHKMLPVNLTQETLFNSKSQDKHAL
                     FPIFTASWRAYRIMNKGA"
     gene            413..910
                     /gene="ubiC"
                     /locus_tag="OQQ75_002629"
     CDS             413..910
                     /gene="ubiC"
                     /locus_tag="OQQ75_002629"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709881.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HCS1976904.1"
                     /translation="MSHPALTQLRALRYFKEIPALDPQLLDWLLLEDSMTKRFEQQGK
                     TVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSG
                     PELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLP
                     ASPLY"
     gene            923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ75_002630"
     CDS             923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ75_002630"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HCS1976905.1"
                     /translation="MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVP
                     QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVV
                     LVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA
                     VSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGIL
                     QIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVG
                     LVLFLGLAMSYWHF"
     gene            complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ75_002631"
     CDS             complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ75_002631"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HCS1976906.1"
                     /translation="MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYV
                     LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESI
                     KLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG
                     RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFN
                     KLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN
                     RLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN
                     LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG
                     RLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLP
                     QMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNI
                     AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDST
                     VPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMA
                     AIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQ
                     DDELHINPSHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLS
                     VLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLT
                     IESATQGEG"
     gene            4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ75_002632"
     CDS             4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ75_002632"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HCS1976907.1"
                     /translation="MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVV
                     IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV
                     LIAIIVAVITWCILLWSHFG"
     gene            5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ75_002633"
     CDS             5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ75_002633"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HCS1976908.1"
                     /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE
                     EHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDP
                     SLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
                     QGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL"
     gene            5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ75_002634"
     CDS             5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ75_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter DinF"
                     /protein_id="HCS1976909.1"
                     /translation="MAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVY
                     LGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQALARALVQPLLLALGAGAL
                     IALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA
                     PVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGI
                     SGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTL
                     LTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGE
                     HIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAA
                     GFALTLLTLPWLGNHALWLALTVFLALRGLSLAAIWRRHWRNGTWFAAT"
     gene            7144..7353
                     /locus_tag="OQQ75_002635"
     CDS             7144..7353
                     /locus_tag="OQQ75_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HCS1976910.1"
                     /translation="MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQ
                     ERYGYQKDQAEKEVVDWETRNEYRW"
     gene            complement(7395..7910)
                     /gene="zur"
                     /locus_tag="OQQ75_002636"
     CDS             complement(7395..7910)
                     /gene="zur"
                     /locus_tag="OQQ75_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc uptake transcriptional repressor Zur"
                     /protein_id="HCS1976911.1"
                     /translation="MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISA
                     YDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQSTHTSAMFI
                     CDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQH
                     DHSVQVKKKPR"
     gene            8228..9213
                     /locus_tag="OQQ75_002637"
                     /pseudo
     CDS             8228..9213
                     /locus_tag="OQQ75_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001560258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2713 domain-containing protein"
     gene            9576..10613
                     /gene="dusA"
                     /locus_tag="OQQ75_002638"
     CDS             9576..10613
                     /gene="dusA"
                     /locus_tag="OQQ75_002638"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HCS1976912.1"
                     /translation="MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYF
                     LRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEA
                     RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDD
                     QDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF
                     PHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDAYPV
                     AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVL
                     EHALKLVADKR"
     gene            10747..10989
                     /gene="pspG"
                     /locus_tag="OQQ75_002639"
     CDS             10747..10989
                     /gene="pspG"
                     /locus_tag="OQQ75_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response protein PspG"
                     /protein_id="HCS1976913.1"
                     /translation="MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALM
                     IKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY"
     gene            complement(11154..12137)
                     /locus_tag="OQQ75_002640"
     CDS             complement(11154..12137)
                     /locus_tag="OQQ75_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HCS1976914.1"
                     /translation="MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFID
                     TYIRSGLYPPPSLPSGSGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIN
                     ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW
                     AKALGAKLIGTVGTAQKAQSALKAGAWQVINYREENLVERLKEITGGKKVRVVYDSVG
                     RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREEL
                     TEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP"
     gene            12220..13635
                     /gene="dnaB"
                     /locus_tag="OQQ75_002641"
     CDS             12220..13635
                     /gene="dnaB"
                     /locus_tag="OQQ75_002641"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HCS1976915.1"
                     /translation="MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLD
                     NERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGG
                     FAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
                     AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKT
                     AGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASL
                     SRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREH
                     GGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR
                     ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
                     LTFNGQWSRFDNYAGPQYDDE"
     gene            13688..14767
                     /gene="alr"
                     /locus_tag="OQQ75_002642"
     CDS             13688..14767
                     /gene="alr"
                     /locus_tag="OQQ75_002642"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCS1976916.1"
                     /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLE
                     TARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNE
                     EQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHF
                     ARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS
                     PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD
                     GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERI
                     AEMTKVSAYELITRLTSRVAMKYVD"
     gene            15020..16213
                     /gene="tyrB"
                     /locus_tag="OQQ75_002643"
     CDS             15020..16213
                     /gene="tyrB"
                     /locus_tag="OQQ75_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709866.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HCS1976917.1"
                     /translation="MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIP
                     QLKAVAEAEARLNAQPHGASLYLPMEGLNSYRHAIAPLLFGADHPVLQQQRVATIQTL
                     GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNSVRF
                     NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGF
                     SAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVLCEDAEAAGRVLGQL
                     KATVRRNYSSPPNLGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM
                     PERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKA
                     FAAVM"
BASE COUNT         3915 a         3903 c         4336 g         4227 t
ORIGIN      
        1 tgatatgttg aatcctacaa aagataccaa ttggaattct acgtgtatct ataaatccag
       61 acataagatg ttgcctgtta atcttactca ggaaacactt ttcaactcca aatctcagga
      121 taaacatgcg cttttcccca tttttactgc gagttggcga gcttatcgta taatgaataa
      181 gggtgcttaa gtaaaggaaa acatcaccgt tcctggcatc ctgggcggtg atgcccctat
      241 ggttgccctc gccagcgcgg gcatcggcaa agcgtaaggt tcaaaagcga tttaccactt
      301 catgcgattg ttgcgttttt gttgcgcatt agatcactta atttgcttta catctcccgt
      361 aaacactttt ctgcgataca atgcctttac gttatgtaac ggagagttcg gcatgtcaca
      421 ccccgcgtta acgcaactgc gtgcgctgcg ctattttaaa gagatccctg ccctggatcc
      481 gcaactgctc gactggctgt tgctggagga ttccatgaca aaacgttttg aacagcaggg
      541 aaaaacggta agcgtgacga tgatccgcga agggtttgtc gagcagaatg aaatccccga
      601 agaactgccg ctgctgccga aagagtctcg ttactggtta cgtgaaattt tgttatgtgc
      661 cgatggtgaa ccgtggcttg ccggtcgtac cgtcgttcct gtgtcaacgt taagcgggcc
      721 ggagctggcg ttacaaaaat tgggtaaaac gccgttagga cgctatctgt tcacatcatc
      781 gacattaacc cgggacttta ttgagatagg ccgtgatgcc gggctgtggg ggcgacgttc
      841 ccgcctgcga ttaagcggta aaccgctgtt gttaacagaa ctgtttttac cggcgtcacc
      901 gttgtactaa gaggaaaaaa atatggagtg gagtctgacg cagaataagc tgctggcgtt
      961 tcatcgctta atgcgtacgg ataagccaat tggcgcgtta ctgctgctct ggccaacatt
     1021 atgggcgttg tgggtggcga caccgggcgt tcctcagctc tggatcctgg cggtatttgt
     1081 cgcgggtgtc tggctgatgc gcgctgccgg atgtgtggtg aatgattatg ctgaccgaaa
     1141 gtttgatggt catgttaagc gcacggcgaa ccgaccactt cccagcggcg cggtaacaga
     1201 gaaagaggcg cgcgcgctgt ttgtagtgct ggtactgatt tcgtttttac tggtactgac
     1261 gctgaatacg atgaccattc tgttgtcgat tgccgctctg gcgttggcgt gggtgtaccc
     1321 gtttatgaag cggtataccc atctcccgca agtggtgctg ggcgcggcgt ttggctggtc
     1381 gattccaatg gcttttgccg ctgtgagtga gtcggtgcca ttgagttgct ggttaatgtt
     1441 cctcgccaat attctctggg cggtggctta cgacacgcag tatgcgatgg ttgaccgcga
     1501 tgatgatgtg aagattggca ttaaatccac ggcaatcctg ttcggccaat acgataaatt
     1561 gattattggt attttgcaga ttggcgtact ggcactgatg gcgatcatcg gtgagttaaa
     1621 tggcttaggc tggggatatt actggtcaat tctggtggct ggcgcgctgt ttgtttatca
     1681 acaaaaactg attgccaacc gcgagcgtga agcctgcttt aaagcattta tgaataataa
     1741 ctatgttggt ctggtactat ttttagggct ggcaatgagt tactggcatt tctgatgatg
     1801 taaaaaagcc ggatgatcat ccggctttct tctgggttgc ctgatgcgcg gcgcttctca
     1861 ggcctacaca acacatcgca atttattgaa tttgcagatt atggaatgcc ggataaggcg
     1921 ttttcgccgc atccggcaat tctctctggt tacccttcgc cctgcgtcgc actctcaatc
     1981 gtcaaacgca cgtctgatgt aatcaactcc gccagcaact gataaacctt catcgtttct
     2041 gccggttcgg catcgccgct atcgctgata tacccttcat cacgcagcgt cagcaccaga
     2101 gaactgaaca ccgccttgtc gaagaactcc ggcgcgttga taccgtgcag cacggagaga
     2161 cgttgcgcga cggtgcggct ctctttctcc agcgtaccgc ggttgatcga cgggttagcg
     2221 ctcaacagcc agaaggtgat ggcataacgt tgcagcgttt cgcgcgcgcc tgcggccagc
     2281 agctgtagcg tgcgagaatg cgacgggttg atatgcaact catcatcttg cagggtaatc
     2341 agcccctgac gttgcatctc atttgccaac gcatcaataa cgtccggcaa ctcgtcgcga
     2401 tcccagcgca ggaacagctc cgctttcagc attgggtaaa gcacattgac gtgctccatc
     2461 aatacgtcgc gggagatgtg gcgatgctgg gtgacaattg ccgccatcag cgaaggcagc
     2521 accaacatat gcgcaatgtt gttgcgatag taggtcatca gcaccgcttg ctcgcgcggc
     2581 agaatgatga tgtcgccgat agtgtctttc tcaacttcaa acttgttcat ttgcagcgcg
     2641 tgatcgataa gctcgctggc gctggctgaa ggaacggtag agtccgtgga gtaaggtacg
     2701 ttgcgcatca gatccaggta gcagttgagt tgctcggtta actgctcgcg ggtaagtgag
     2761 cgctgacgtg atgccagtag cgcggtacag cagaggttca tggcgtttgc cgcgcctgcg
     2821 ttgttaatgc gtaccatcag atcggcagca atattattga ccgtcggcgt taaccatgcc
     2881 ggacgcaccg cttcgatggg atcgatagat tcacgccagt caggtacatg ctggttaagg
     2941 taggtcatca acggcattgg ttcaccgaag ttgacgtaac cctgaccgag attacgcagc
     3001 ttgcttaaac cgcgcagcat ctgcggcagg ctctctttct ctttcgtcgc accgcgcagt
     3061 tctttggcgt aagtacccac ttccatgacg tgctcataac cgatatagat cggaatcagc
     3121 gtaatcggac gcgtgccgcc acgcagcatc gcctgaatgg tcatcgacag cgtaccggtt
     3181 ttcggatcca gcaaacgccc cgtacgggaa cgaccgcctt ccacgaaata ctcgacggaa
     3241 taaccacggc tgaacagttc gccgagatac tcacggaaaa cggtggaata aagtttattg
     3301 cctttaaacg tacggcgaat aaagaacgcc cccagacggc ggaaaatcgg cccggccggc
     3361 cagaaattca ggttgatccc ggcggcgata tgcggcggca ccagcccctg gtggtacagc
     3421 acgtaagaaa gtagcaggta gtccatgtga ctgcggtggc aaggcacata caccagctca
     3481 tgaccgtcgt gggccagctg gcgaacgcgc tcggcgttat ggacgttgat gccctgataa
     3541 agtcggttcc aggtgaagcc cagaatgcgg tcagtcaggc ggatcatctc gtaagagaaa
     3601 ttcgccgcaa tctcttccat cagcgcaatc gcgttctgct gcgctttttc atgggagatt
     3661 tttttgctgc gcgcttcatc ttctaccgct ttggcaatgg cgcgggaggc gagcagctta
     3721 ttaaacagat cctgacgagc aggcagacgt gggcccacag cagccagacg ttgacgggca
     3781 aagtgcatac gcgccacgcg cgccagtttc tgtgcgatag ttttatccgt gccgtgttca
     3841 tccgccatac ggcgcagcga aactgacggc gagaaacgca caaaactgtc gcgaccgagc
     3901 cacagtacgg cgaaaaattt ctgtacgccg ttaagcatac gcagcggcgg gtttacttcg
     3961 cctttttcac gccccggcgc gcgaccaaac atcaccgata ctggcaccat ctgcacatcc
     4021 agatttgggt tgctacggtg caaatcgaga tagtcgtgga acagcttaat agactcttct
     4081 ttcggcgtgt aataggtgaa tacacgcggc ccgccgtgaa tgaacacata gcgcggcagt
     4141 agcgtgccgt cgatttccag cggctctaac gggtcaggca agtcatgagc cagacactgg
     4201 gcgcgtaacg tcagcaaatc tgctttcgag ttgtacggta aaacgtacat aattggacga
     4261 gaggtatcca gccccagttc cggggcagga tctgccggaa tagacttgct ttttaccagg
     4321 atgcttaatg gtaaattcag taatttgtag taaattcgtg gccagccgga cataaacgat
     4381 gtaaagcctc tggttaataa tgcaaatgcg cggcaaggat agcagaaagt catgggaaat
     4441 tctgtggtat ccgctcatgt ttcgcgcggc gttacgcaaa cccgaatcat cggatttaac
     4501 ggtacactga tattgacgct cataatgtaa aaaggttctt tcaatggcca ataataccac
     4561 tggattcacc cgaattatca aagctgctgg ctattcctgg aaaggtttac gcgctgcatg
     4621 gatcaacgaa gcggcattcc gtcaggaagg cgtagcggta ttgttggcgg tggtcatcgc
     4681 ctgctggctg gatgtggacg caattacccg cgtgctgctt atcagctccg tgatgctggt
     4741 gatgattgtg gaaatcctca atagcgccat cgaagcagtg gttgaccgaa ttggctctga
     4801 ataccatgag ctttccggac gcgcaaaaga tatgggatcc gccgcggtgc tgattgcgat
     4861 tatcgtcgcc gtgataacct ggtgcatcct gttatggtcg cattttggat aacccttcca
     4921 gaattcgata aatctctggt ttattgtgca gtttatggtt ccaaaatcgc cttttgctgt
     4981 atatactcac agtataactg tatatacacc cagggggcgg aatgaaagcg ttaacggcca
     5041 ggcaacaaga ggtgtttgat ctcatccgtg atcacatcag ccagacaggt atgccgccga
     5101 cgcgtgcgga aatcgcgcag cgtttggggt tccgttcccc aaacgcggct gaagaacatc
     5161 tgaaggcgct ggcacgcaaa ggagttattg aaattgtttc cggcgcatca cgcgggattc
     5221 gtctgttgca ggaagaggaa gaagggttgc cgctggtagg tcgtgtggct gccggtgaac
     5281 cgcttctggc gcagcagcat attgaaggtc attatcaggt cgatccttcc ttattcaagc
     5341 cgaatgctga tttcctgctg cgcgtcagcg ggatgtcgat gaaagatatt ggcattatgg
     5401 atggcgactt gctggcagtg cataaaactc aggatgtacg taacggtcag gtcgttgtcg
     5461 cacgtattga tgacgaagtt accgttaagc gcctgaaaaa acagggcaat aaagtcgaac
     5521 tgttgccaga aaatagcgag tttaaaccaa ttgtcgttga ccttcgtcag cagagcttca
     5581 ccattgaagg gctggcggtt ggagttattc gcaacggcga ctggctgtaa catatctctg
     5641 agaccgcgat gccgccaggc gtcgcggttt gtttttcatc tctcttcatc aggcttgtct
     5701 gcatggcatt cctcacttca tctgataaag cactctggca tctcgcctta cccatgattt
     5761 tctccaatat caccgttccg ttgctgggac tggtcgatac ggcggtaatt ggtcatcttg
     5821 atagtccagt ttatttgggc ggcgtggcgg ttggtgcaac ggcgaccagc tttctcttta
     5881 tgctgttgct gtttttacgc atgagcacca ccgggctgac tgcgcaggct tatggtgcca
     5941 aaaatcctca ggcattagcc cgtgcgctgg tgcaaccgtt gctgttggcg ttgggggcag
     6001 gggcgttaat tgcgctgctg cgtacaccga ttatcgatct ggcactgcat attgttggcg
     6061 gtagtgaagc agtcctggaa caggcgcggc gctttcttga aatccgctgg ttaagcgcac
     6121 cggcgtcact ggcgaatctg gtattacttg gttggttact cggcgtgcaa tatgcccgtg
     6181 cgccagtaat tttgttagtg gtcggcaata tcctcaacat tgtgctggat gtctggctgg
     6241 tgatggggct gcatatgaac gtgcagggcg cggcgctggc gacggttatt gcggaatatg
     6301 caacattgct gattggtctg ctaatggtgc gtaaaatcct caaactacgc ggaatttccg
     6361 gcgaaatgct gaaaactgcc tggcgaggaa acttccgtcg cttgctggcg cttaaccgcg
     6421 atatcatgct gcgttcgctg ttgttgcaac tctgtttcgg cgcgatcacc gtacttggtg
     6481 cgcgactggg gagtgacatt atcgctgtta acgcggttct gatgacgcta ctcaccttta
     6541 ccgcctatgc gctggatggt tttgcctacg cggttgaagc gcattccggt caggcgtacg
     6601 gtgcgcgcga cggtagccag ttgctggatg tctggcgggc agcgtgccgc cagtcgggga
     6661 tcgtagcgtt actgttttcg gtagtttatt tgctggcagg ggaacacatc attgcgttgc
     6721 tgacgtcgtt aacccagatt cagcagctgg ccgaccgcta tcttatctgg caggtgattt
     6781 tgccgttggt tggcgtctgg tgttatctgc tggacggcat gtttataggc gcaacgcgcg
     6841 cagccgaaat gcgtaacagt atggcggtgg ccgccgcagg ttttgcgctg acgctcctta
     6901 cgctgccgtg gctgggtaat catgctttgt ggctggcgtt aaccgtcttt ctggcgttgc
     6961 gcgggctttc tctggcggct atctggcggc gtcactggcg caacggtacc tggtttgccg
     7021 caacgtgacg gttaaaaatt ctgaataaat aatcctaagc caaattgctg actacactta
     7081 atctcacgtt cagaagaaaa gtgaacgtac tctcattcac aacctaacga tgaggtcttg
     7141 attatgaata aagatgaagc cggcggtaac tggaaacagt ttaaaggtaa agtgaaagag
     7201 caatggggca aactgaccga tgatgatatg acgatcattg aaggtaaacg tgatcaactg
     7261 gtcggtaaaa tccaggaacg ttatggttat cagaaagatc aggcagaaaa agaggtcgtg
     7321 gattgggaaa cccgcaatga atatcgctgg taattaatcc ctcctgcccg acgtgtacaa
     7381 ggatgtacgc cctcttaacg cggtttcttt ttcacctgca cagagtgatc atgctggcac
     7441 tgttcaggat gacgacacgc ttccacttcc acgcatgccg cacagagccc atgtgcttca
     7501 atcacattat gccgcagggc aaaccccatt tttgccgcca gcgtatgcat gatgtcttcc
     7561 acgccttctg cacactcttc tttcactgcg ccgcagcgat cgcaaataaa catagctgaa
     7621 gtatgggtgg actggtcgaa cagatgacag agcacataac tgttggtgga ttccacctta
     7681 tgcacaaaac cttgctcaag cagaaaatcc agcgcgcgat aaaccgttgg cggcttggct
     7741 tgcggttcag cttcgcgcag taaatcaagc agatcataag cgctgatagc gccatcctgc
     7801 agactcatca ggcgcaacac ttccaggcgc tgtggggtca ggcgcacatt acgctgcgcg
     7861 cagatttttt cagcctgcgc taataactcc tgcgttgtgg tcttttccat cgggcacctc
     7921 aaagtggggg ttaagaatgt ccttacttta ccatgttcca ggaaaaacac cgagaaccct
     7981 tattgttgcc gtaatgttga ttttctgttt tgtaggtaag gtgttatgtt gccttgtcgt
     8041 accattatca acacgataat aattaataat tcatttttaa ataaattgct tcaagttaac
     8101 tcgctattta tttaactggg tttaaacgca tacctgtagt tcagaaatta tgagcgattt
     8161 ttgatagtga ccagatggca aaagaattat aaggaggaca cggtacgaca aaaaaggtag
     8221 atgaatcatg ttgaagataa tacccggtgc aactggatac tttaataaaa cactcaattc
     8281 aaatcaattc gataatgaag atgcaatcaa agataaatta gataatagag gttcaatcaa
     8341 aggtaaatta aataatatat atggtaaatc tattgattat gcagcgctgc gtcatcggga
     8401 tataattatt gcaaaaatag atttgtttat tcaacgaatc acgcataatt tatggcatgc
     8461 acgtaaaaaa atgtgttttt aattgagcaa ataaatgatc tcaaaatgtg ggtcaataag
     8521 tatattgacg attgcactga tgaggattta aacgatcgtg actttattgc atcagttgtt
     8581 gaccgggcta tttttcattt cgcgattaat agtatatgta atcctgggga taataaagat
     8641 gcgactccca ttgaacaatg tacttttgat gtagaaacta agaatggcct tccctccacg
     8701 gttcagctat tttatgagga atctaaggat aatgaacctt tagcgaatat acattttcaa
     8761 acaataggtt ctggtttttt aacgtttgtt aatgcctgcc aggaacatga tgacaacagc
     8821 ttaaaattat ttgcttcgct gttaatttca ctttcatatt ctagtgccta cgcagattta
     8881 tcagaaacag tgtatattaa tgaaaataat gagagctacc tgaaagctca gtttgaaaaa
     8941 ttatctcaac gtgatatgaa gaagtacctg ggagagatga agcgtctggc tgatggggga
     9001 gaaatgaatt ttgatggcta tctggataag atgtcacatc tggtgaatga agggacgctc
     9061 gatcctgata ttttaagcaa aatgcgagat gctgcaccac aattaattag cttcgcgaag
     9121 tcgtttgacc caacctcaaa ggaagagatt aaaatactta cagacacttc taaattaatt
     9181 tatgatttgt tcggggttaa atcggagaaa taatatgtga agttcttcga tagtatggaa
     9241 ggcattatat aaaaggaccc aatatttatt gggtcctttt ttctctatca atgctattag
     9301 cagggagata tatcaccaaa gtttaatgtg tgatttttta tttatcgtcg aacctggatt
     9361 gtttatcatt ggccttaaca aagttaacgg ctaataagat tatttccatc acttcgtgag
     9421 agcttcatgc cttgagagga tctcaatttt cttttgcaat gagacaggcg cttcctgttg
     9481 ttatggtata gtaccccgct attgagcctc ctgaatagtg atgctgaata acataacccc
     9541 atgatatatc gataaaataa tctctacatt tgaaaatgca cggtaattct gaaatgcaaa
     9601 aaatcaacca aaccagcgca atgcctgaaa aaactgacgt tcactggagt ggtcggttta
     9661 gcgttgcacc aatgctcgac tggacggaca gacattgccg ctatttcttg cgtctgcttt
     9721 cccgcaatac gttgctgtat accgaaatgg tgaccacagg ggcgattatt cacggtaaag
     9781 gtgattacct ggcgtacagt gaagaagaac atccggtagc gttgcaactc ggcggtagcg
     9841 atccggcggc gctggcacag tgtgcgaagc tggcagaagc gcgtggatat gatgagatca
     9901 acctgaatgt cggctgcccg tctgaccggg tgcagaacgg catgtttggt gcgtgtctga
     9961 tgggtaatgc gcagctggtt gccgattgcg tgaaagcgat gcgcgatgtg gtgtcgattc
    10021 cggtgacggt gaaaacgcgt attggcatcg atgaccagga cagctatgaa tttctctgcg
    10081 atttcatcaa caccgtttcc ggcaaaggcg agtgtgggat gttcatcatc catgcacgta
    10141 aagcctggct ttcggggtta agcccgaaag aaaaccgtga aatcccgccg ctcgattatc
    10201 cgcgtgtgta tcaactgaag cgtgactttc cgcatctgac aatgtcgatt aacggtggta
    10261 tcaagtcgct ggaagaggcc aaagcacacc tgcaacatat ggatggcgtg atggtcgggc
    10321 gcgaggcgta tcagaatccg ggtattctgg cggcggtaga ccgggagatc tttggttcct
    10381 cggataccga tgcctatccg gtggcggtag tgcgcgccat gtatccgtac attgagcgtg
    10441 aactcagcca ggggacgtat ctcggccata ttacccggca tatgttgggc ttgttccagg
    10501 gtattcctgg cgcgcggcag tggcggcgtt atttaagtga aaatgcccat aaagcgggtg
    10561 cagacattaa tgtgctggaa cacgcgctca aactggtggc ggataagcgt taacttttca
    10621 ccaaaaagta gtcaaattca ccacgccctg cgcaccgtcg cggggcgttt tgctgttaaa
    10681 tcaatagatt atttttggca tgattcttgt aatgccagca agagatttca tatttgggag
    10741 agcatcatgc tggaactact ttttgtgatt ggcttttttg tcatgctgat ggtcaccggc
    10801 gtttcgttgc tgggcattat cgccgcgctg gttgtggcga cggccattat gttcctcggc
    10861 ggtatgctgg cattgatgat taagttgctg ccgtggttac tactggcgat tgcggtggtg
    10921 tgggttatta aggcgattaa agcaccaaaa gtgcctaaat atcagcgtta tgaccgctgg
    10981 cgttactaag ggattgtgcg gatgatcaca acctaaggtt ttatccttag aacaaaatag
    11041 gaattgataa tcaaatctgt cactattgcg cctctaacag attcatcgtg ctgtacccta
    11101 catacagccg actataaaaa gaaagggctt cccaggtgga agccctattt cttttatgga
    11161 atcagcaggc tggaaccttg cgtcgcccgg ctttccagaa tctcatgcgc acgctgcgca
    11221 tccttcagcg gatatttctg ctgctcggcg acatcgacct taatcacacc gctggcaatc
    11281 aaagagaaca gttcattact ggcctcggtt aattcctccc gtgtggtgat atagccttgc
    11341 agggaagggc gtgtcacata caacgagcct ttttgattga gaatgcctaa gttcacaccg
    11401 gtaaccgcac ctgatgagtt gccaaaactg accattaagc cgcggcgttg caggcaatcc
    11461 agcgaccgtt cccaggtgtc tctgcccacg gaatcgtaca ctacgcgcac tttcttaccg
    11521 ccggtgatct ctttcaatcg ctcgaccaga ttctcttcac gatagttaat aacctgccac
    11581 gcgccggctt ttagcgcgct ctgcgctttt tgcgcggttc ctacggtgcc gataagtttc
    11641 gcgcccagag cttttgccca ctggcaggca atcaagccaa cgccgccagc cgctgcgtgg
    11701 aacaggaact gttcatcggg tttaatttca taggttttgc gcagcagata ataaaccgtt
    11761 aagcctttca ggaaagatgc tgcagcttgc tcaaaagaaa tagccgcagg cagaatcgcc
    11821 gctttatccg cattaatgtt atgcacagag ctgtaagcgc ctaacgccga ctgcgcatag
    11881 actacacgat cgcctgcctt aatatgcttt acaccactgc cgactttact cacgatgcct
    11941 gccgcttcgg tacctgatcc gctgggtagt gatggcggcg ggtaaaggcc gctgcggata
    12001 tacgtgtcga taaaattgat gccgatggct ttattttcga cctggatttc attctctgcc
    12061 ggatcggcag gagtgaactc tacggcttga agtacttccg ggccaccgtg cttgtgaaat
    12121 tcaattcgtg ttgccatgtg tcctccagaa cgtatcgtca gggtctgctt catatggtaa
    12181 agtttcgacc cattctttat ctcggtaact ccattcacta tggcaggaaa taaacccttc
    12241 aacaaacagc aggctgaacc ccgcgaacgc gatccacaag ttgccgggct gaaagtgcct
    12301 ccgcactcga tcgaagcgga gcagtcggtg ttgggcggtt taatgctgga taacgaacgc
    12361 tgggacgatg tagccgagcg tgtggtggca gacgattttt acacccgccc acaccgccat
    12421 atctttactg aaatggcgcg tttgcaggaa agcggtagtc ctatcgatct gattaccctt
    12481 gcggaatcgc tggaacgcca ggggcaactc gatagcgtcg gtggttttgc ttatctggca
    12541 gagctgtcaa aaaatacgcc aagtgcggcg aacatcagtg cttatgctga catcgtgcgt
    12601 gaacgtgccg ttgtccgtga gatgatctcg gttgcgaatg agattgctga agccggtttt
    12661 gatccgcagg ggcgtaccag cgaagatctg ctggaccttg ctgaatcgcg cgtctttaaa
    12721 attgccgaaa gtcgtgcaaa caaagacgaa gggccgaaga acatcgccga tgtgctcgac
    12781 gcaaccgtgg cgcgtattga gcagttgttt cagcagccac acgatggcgt taccggagta
    12841 aacaccggtt atgacgatct caacaaaaaa accgctggct tgcagccgtc ggatttgatc
    12901 atcgtcgccg cgcgtccgtc gatgggtaaa acaacatttg cgatgaacct cgtcgaaaac
    12961 gcggcgatgt tgcaggataa accagtactt atcttctcgc tggagatgcc ttcagaacag
    13021 attatgatgc gttctctggc gtcgctgtcg cgcgttgacc agactaaaat ccgtaccggg
    13081 cagctcgatg atgaagactg ggcgcgcatt tccggcacca tgggtatttt gctcgaaaaa
    13141 cgcaatatct atatcgatga ctcctccggc ctgacgccaa cggaagtgcg ttcccgcgca
    13201 cgccgtattg cccgtgaaca cggcggcatc gggcttatca tgatcgacta cctgcaactg
    13261 atgcgcgtac cggcgctttc cgataaccgt acgctggaaa ttgcagaaat ctctcgctcg
    13321 ctgaaagcac tggcgaaaga actgaacgtg ccggtggtgg cgctgtccca gttgaaccgt
    13381 tctctggaac aacgtgccga caaacgcccg gtcaactccg acctgcgtga atctggctct
    13441 atcgagcagg atgcggactt gatcatgttt atctatcgtg atgaggtgta tcacgaaaac
    13501 agtgatttaa aaggcatcgc ggaaattatt atcggtaaac aacgtaacgg cccaatcggg
    13561 acggtacgcc tgacctttaa cggtcaatgg tcgcgcttcg acaactatgc ggggccgcag
    13621 tacgacgacg aataataatt attttatgaa ttaggcaatt aaagcaaaca cttatcaagg
    13681 aacacaaatg caagcggcaa ctgttgtgat taaccgccgc gctctgcgac acaacctgca
    13741 acgtcttcgt gaactggccc ctgccagtaa aatggttgcg gtggtgaaag cgaacgctta
    13801 tggtcacggt cttcttgaga ccgcgcgaac gctccccgat gctgacgcct ttggcgtagc
    13861 ccgtctcgaa gaagctctgc gactgcgtgc ggggggaatc accaaacctg tactgttact
    13921 cgaaggcttt tttgatgcca gagatctgcc gacgatttct gcgcaacatt ttcataccgc
    13981 cgtgcataac gaagaacagc tggctgcgct ggaagaggct agcctggacg agccggttac
    14041 cgtctggatg aaactcgata ccggtatgca ccgtctgggc gtaaggccgg aacaggctgg
    14101 ggcgttttat catcgcctga cacagtgcaa aaacgttcgt cagccggtga atatcgtcag
    14161 ccattttgcg cgcgcggatg aaccaaaatg tggcgcaacc gagaaacaac tcgctatctt
    14221 taataccttt tgcgaaggca aacctggtca acgttccatt gccgcgtcgg gtggcattct
    14281 gctgtggcca caatcgcatt ttgactgggt gcgcccgggc atcattcttt atggcgtctc
    14341 gccgctggaa gatcgctcca ccggtgccga ttttggctgt cagccagtga tgtcactaac
    14401 ctccagcctg attgccgtgc gtgagcataa agccggagag cctgttggtt atggtggaac
    14461 ctgggtaagc gaacgtgata cccgtcttgg cgtagtcgcg atgggctatg gcgatggtta
    14521 tccgcgcgcc gctccatccg gtacgccagt gctggtgaac ggtcgcgaag taccgattgt
    14581 cgggcgcgtg gcgatggata tgatctgcgt agacttaggt ccacaggcgc aggacaaagc
    14641 cggggatccg gtcattttat ggggcgaagg tttgcccgta gaacgtatcg ctgaaatgac
    14701 aaaagtgagc gcttacgaac ttattacgcg cctgacttca agggtcgcga tgaaatacgt
    14761 ggattaatcg ttctgtaata tttgattgtc tgtgccggat gcggcgtgaa tgccttatcc
    14821 ggccaataaa atcctaaaaa ttcaataagt tgatgttctt tcatgctctt ataaaggtcg
    14881 tgcctctggc ggatgttcgt ttgtcatgag tctcactctg ttgctaattg ccgttcgctc
    14941 ctgaacatcc actcgatctt cgccttcttc cggtttattg tgttttaacc acctgcccgt
    15001 aaacctggag aaccatcgcg tgtttcaaaa agttgacgcc tacgctggcg acccgattct
    15061 tacgcttatg gagcgtttta aagaagaccc tcgcagcgac aaagtgaatt taagtatcgg
    15121 tctgtactac aacgaagacg gaattattcc acaactgaaa gccgtggcgg aggcggaagc
    15181 gcgcctgaat gcgcagcccc atggcgcttc gctttattta ccgatggaag ggcttaacag
    15241 ctatcgccat gccattgcgc cgctgctgtt tggtgcggac catccggtac tgcaacaaca
    15301 gcgcgtagca accattcaaa cccttggcgg ctcaggggca ttgaaagtgg gcgcggattt
    15361 cctgaaacgc tacttcccgg aatcaggcgt ctgggtcagc gatcctacct gggaaaacca
    15421 cgtagcaata ttcgccgggg ctggattcga agtgagtact tacccctggt atgacgaagc
    15481 gactaacagc gtgcgcttta atgacctgtt ggcgacgctg aaaacattac ctgcccgcag
    15541 tattgtgttg ctgcatccat gttgccacaa cccaacaggt gccgatctca ctaatgatca
    15601 gtgggatgcg gtgattgaaa ttctcaaagc ccgcgagctt atcccattcc tcgatattgc
    15661 ctatcaagga tttagtgccg gtatggaaga ggatgcctac gctattcgcg ccattgccag
    15721 cgctggatta cccgctctgg tgagcaattc gttctcgaaa attttctccc tttacggcga
    15781 gcgcgtcggc ggactttctg ttctgtgtga agatgccgaa gccgctggcc gcgtactggg
    15841 gcaattgaaa gcaacagttc gccgcaacta ctccagcccg ccgaatttgg gtgcgcaggt
    15901 ggtggctgca gtgctgaatg acgaggcatt gaaagccagc tggctggcgg aagtagaaga
    15961 gatgcgtact cgcattctgg caatgcgtca ggaattggtg aaggtattaa gcacagagat
    16021 gccagaacgc aatttcgatt atctgcttaa tcagcgcggc atgttcagtt ataccggttt
    16081 aagtgccgct caggttgacc gactacgtga agaatttggt gtctatctca tcgccagcgg
    16141 tcgcatgtgt gtcgccgggt taaatacggc aaatgtacaa cgtgtggcaa aggcgtttgc
    16201 tgcggtgatg taatgcagga aagcaggctg gagttaccca gcctgcagtg aaattaaact
    16261 gtcgtcgctt tcactatttc tttgtagatg atttttttga tgccgttgtt ctacgtgaga
    16321 gataataaaa cgttgtcagt tcttttattg ttaagtttat cccaattaac tggaattcct
    16381 t
//
LOCUS       DAJVUP010000092        16355 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.092, whole genome shotgun sequence.
ACCESSION   DAJVUP010000092 DAJVUP010000000
VERSION     DAJVUP010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16355
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.092"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(52..216)
                     /locus_tag="OQQ75_002644"
                     /pseudo
     CDS             complement(52..216)
                     /locus_tag="OQQ75_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280578.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
     gene            complement(295..389)
                     /locus_tag="OQQ75_002645"
     tRNA            complement(295..389)
                     /locus_tag="OQQ75_002645"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(353..355),aa:Sec,seq:tca)
     gene            682..2064
                     /locus_tag="OQQ75_002646"
     CDS             682..2064
                     /locus_tag="OQQ75_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside-pentoside-hexuronide family
                     transporter"
                     /protein_id="HCS1976918.1"
                     /translation="MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA
                     GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD
                     LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
                     LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMR
                     EDLRDIWQNDQWRIVGLLTIFNILAVCVLGGAMMYYVTWILGTPEVFVAFLTTYCVGN
                     LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQL
                     VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA
                     AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGKRRCQ
                     QQFTSQEVQN"
     gene            2074..4365
                     /gene="yicI"
                     /locus_tag="OQQ75_002647"
     CDS             2074..4365
                     /gene="yicI"
                     /locus_tag="OQQ75_002647"
                     /EC_number="3.2.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HCS1976919.1"
                     /translation="MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRER
                     TWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAE
                     FKSGNLSARVSKGEFWSLDFLRNGERITGQDTNNQRNYMFERLDLGVGETVYGLGERF
                     TALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQSVSFEVGSEKVSK
                     VQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEAT
                     VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKIC
                     VWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADK
                     LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAHIYNELVWNVLKDTVGEE
                     EAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHYIGGFEN
                     TAPAHVYKCWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYR
                     EAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEG
                     RWTHLWHNDELDGRCWHKQQHSFLSLPIYVRDNTLLALGNNDQRPDYAWHEGTAFHLF
                     NLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQD
                     GSQAESEQGLVVKPQGNALTITL"
     gene            complement(4418..6127)
                     /locus_tag="OQQ75_002648"
     CDS             complement(4418..6127)
                     /locus_tag="OQQ75_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1976920.1"
                     /translation="MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSD
                     YHLAFGAMDHRFSAPSHIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTIL
                     LENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPKAGKVL
                     GTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADG
                     SWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDAHLQGPDWAVTDLDLS
                     LRNMTFSKDDWQTQEGKLLMNASEFIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGG
                     MVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRN
                     LIIDIDPDFPWQLTTLDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLA
                     LTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPEL
                     PLTGDGNIQLTASGDIQANAPLKPTVSGQLHAVNAAKQQVTQTMNAGIVSSGEVTSAE
                     LVQ"
     gene            complement(6248..7639)
                     /gene="xanP"
                     /locus_tag="OQQ75_002649"
     CDS             complement(6248..7639)
                     /gene="xanP"
                     /locus_tag="OQQ75_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine/proton symporter XanP"
                     /protein_id="HCS1976921.1"
                     /translation="MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL
                     AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKTWGPVGSGLLSIQG
                     TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPL
                     VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNP
                     YLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLML
                     VFMITSLETIGDITSTSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF
                     GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA
                     ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGIT
                     AIVLNLIFPPEKQ"
     gene            7919..9124
                     /gene="gltS"
                     /locus_tag="OQQ75_002650"
     CDS             7919..9124
                     /gene="gltS"
                     /locus_tag="OQQ75_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HCS1976922.1"
                     /translation="MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLL
                     VALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVV
                     GLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEV
                     AMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLI
                     ETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVS
                     VLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD
                     AAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKL
                     YLMLPIFAG"
     gene            complement(9158..11239)
                     /gene="recG"
                     /locus_tag="OQQ75_002651"
     CDS             complement(9158..11239)
                     /gene="recG"
                     /locus_tag="OQQ75_002651"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HCS1976923.1"
                     /translation="MTGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRY
                     EDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAA
                     MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
                     ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQH
                     PAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARV
                     VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
                     NNFRNWFEPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLA
                     LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
                     LPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATW
                     EELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMI
                     IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQ
                     KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIER
                     WMPETERYSNA"
     gene            complement(11245..11934)
                     /gene="trmH"
                     /locus_tag="OQQ75_002652"
     CDS             complement(11245..11934)
                     /gene="trmH"
                     /locus_tag="OQQ75_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(18)-2'-O)-methyltransferase
                     TrmH"
                     /protein_id="HCS1976924.1"
                     /translation="MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG
                     VHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNA
                     VDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE
                     AQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEAD
                     ADWWATMQAAG"
     gene            complement(11941..14049)
                     /gene="spoT"
                     /locus_tag="OQQ75_002653"
     CDS             complement(11941..14049)
                     /gene="spoT"
                     /locus_tag="OQQ75_002653"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HCS1976925.1"
                     /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP
                     YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
                     LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
                     ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS
                     EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRV
                     LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG
                     VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
                     PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
                     ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENI
                     QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGV
                     LITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQE
                     FITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA
                     NIMRKIRVMPDVIKVTRNRN"
     gene            complement(14068..14343)
                     /gene="rpoZ"
                     /locus_tag="OQQ75_002654"
     CDS             complement(14068..14343)
                     /gene="rpoZ"
                     /locus_tag="OQQ75_002654"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013511051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HCS1976926.1"
                     /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND
                     KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR"
     gene            complement(14398..15021)
                     /gene="gmk"
                     /locus_tag="OQQ75_002655"
     CDS             complement(14398..15021)
                     /gene="gmk"
                     /locus_tag="OQQ75_002655"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000046969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HCS1976927.1"
                     /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP
                     RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD
                     IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY
                     DEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD"
     gene            15279..>16355
                     /gene="ligB"
                     /locus_tag="OQQ75_002656"
     CDS             15279..>16355
                     /gene="ligB"
                     /locus_tag="OQQ75_002656"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418104.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
                     /protein_id="HCS1976928.1"
                     /translation="MKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRQQQQIKQW
                     DDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRK
                     MADKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSL
                     ISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSL
                     GVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVT
                     DGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLA
                     SVMLDDKKVQRVNIGSVRRWQEWDI"
BASE COUNT         3717 a         4180 c         4449 g         4009 t
ORIGIN      
        1 gtataaaaaa gggtgttatg gagcgtgtaa aacaacatct tcaccttaat ggcgatacag
       61 ttggctgaga gccagcaggg ggcaaatcac ctgcaaataa acacggcaca tgctggcgcg
      121 catatcgcgg atgcgttcga ggacagaaga accgacaggc ggattcttca gccgctcatc
      181 gtccatcaca aaaccttaga ccaggtattc ctgaagccga ttgaatattg agcagtagaa
      241 aatatctgga ttgacagtat tacaaggggt tggagaacgt cagaagaggc attttggcgg
      301 aagatcacag gagtcgaacc tgtccgggac cgctggcggc cccaactgga tttgaagtcc
      361 agccgcctca ccggagacga cgatcttccg cgcctcgatt gctacatgga ggcggggcgc
      421 attatagcta cttccttgag tttctacatc ccccagatca gttttttccg cctaatacac
      481 gcagcgtatt atcacgaaag cattatagtt catataaaac tcatatttta caatgacata
      541 tgagcggaat taacgctacc acgatcacat aaaacaagaa tcataaatta ataaccagat
      601 atcggaatat tcgctctcac agggatggtt tacaaaatgc gttatcggtc tcagcacccc
      661 tatagcatca aggaaaagca gatgaagagt gaagtgttgt ccgttaaaga gaaaattggt
      721 tatggcatgg gagacgccgc cagccacatt attttcgata acgtaatgtt atatatgatg
      781 ttcttttata ccgatatttt tggcattcct gccggttttg tcggaaccat gtttttggtc
      841 gctcgtgcac tggatgcgat ttccgatcct tgcatggggt tgttggccga tcgaacgcgc
      901 tctcgctggg gtaaatttcg tccgtgggta ctgtttggcg cactgccatt cgggatcgtc
      961 tgtgtactgg cctatagcac gccagatctc agtatgaacg gcaaaatgat ctatgcagca
     1021 attacttaca ccctacttac cttactttat accgtcgtca atatccctta ctgcgcattg
     1081 ggtggtgtaa tcaccaatga cccgactcag cgtatctcgc tgcaatcctg gcgttttgtg
     1141 ctggcgaccg cgggaggcat gctttctact gttctgatga tgccactggt taatttaatt
     1201 ggcggtgata ataaaccact cggtttccag ggcggtatcg cggtcctttc cgtggtggca
     1261 ttcatgatgc tggcattttg tttcttcacc actaaagaac gcgttgaagc accacctaca
     1321 acaacgtcta tgcgggaaga tttacgtgat atctggcaaa acgaccagtg gcggattgtc
     1381 ggtttactaa ccattttcaa tatcctggcg gtgtgcgtac tcggtggggc gatgatgtat
     1441 tacgtcacat ggattttggg cacgccggaa gtgtttgtcg cttttctcac cacttattgc
     1501 gtgggtaacc tgattggttc cgcactggca aaacctctga ccgactggaa atgtaaagtc
     1561 actatcttct ggtggacgaa cgccctgctg gcagtgatta gcctcgcgat gttctttgtt
     1621 cccatgcagg ccagcatcac tatgtttgtc ttcatcttcg tgattggtgt gttgcatcaa
     1681 ctggtgacac ctatccagtg ggtaatgatg tccgataccg tcgactacgg cgagtggtgc
     1741 aatggtaaac gcctgaccgg gatcagtttt gctggcacgc tgtttgtgct caaactgggg
     1801 ttggccttcg gcggcgctct tatcggctgg atgctggctt atggcggata tgatgcggca
     1861 gaaaaagcgc agaacagcgc cacgattagc atcattattg cgctattcac gattgttccg
     1921 gcgatctgtt atttgctgag cgcgattatc gctaaacgct actactcact cacgacgcac
     1981 aatctgaaaa ccgttatgga acagctggct cagggtaaac gccgttgcca gcaacaattc
     2041 acctctcaag aagtgcagaa ctaaggaacg gcaatgaaaa ttagcgatgg aaactggttg
     2101 attcaacctg gcctcaattt gattcacccg cttcaggtgt tcgaggttga acagcaggat
     2161 aatgaaatgg tggtctatgc tgccccccgt gatgtgcgtg aacgtacctg gcagcttgat
     2221 acgcctttat ttacgctgcg ctttttctcc ccacaggaag gtattgtcgg tgtgcggatt
     2281 gagcattttc agggagcgct gaataacggt cctcattatc cgctcaatat tttgcaggac
     2341 gtgaaggtca caatcgaaaa cacagaacgt tatgctgagt ttaaaagtgg caacttaagc
     2401 gcgcgtgtca gcaaaggtga gttctggtca ctcgattttc tgcgcaacgg tgaacgtatt
     2461 accggtcagg acacgaataa tcaacgaaat tatatgtttg agcggcttga tcttggcgtt
     2521 ggcgaaacag tttatggtct gggagagcgt tttactgccc tggtgcgcaa tggtcagacg
     2581 gtagagacct ggaaccggga cggcggcaca agtactgaac aggcgtataa aaatatcccg
     2641 ttctatatga ctaaccgtgg ctatggggtg ctggtcaatc acccccagag tgtctctttt
     2701 gaagtgggat cggagaaagt ctccaaagtg cagttcagcg ttgagagcga atatctcgaa
     2761 tactttgtta tcgacggtcc gacgccgaaa gcggtacttg atcgttatac ccgttttact
     2821 ggtcgtccgg cgctgccgcc cgcatggtcc ttcggcctgt ggctaaccac ttcatttacc
     2881 accaactacg acgaagcgac ggtaaacagc tttatcgatg gtatggcgga acgcaatctg
     2941 ccgctgcatg ttttccactt tgactgtttc tggatgaaag ccttccagtg gtgcgatttt
     3001 gagtgggacc cgctgacttt cccggacccg gaagggatga tccgccgcct gaaagcgaaa
     3061 gggctgaaaa tctgcgtctg gattaacccc tatatcggtc aaaaatcccc cgtctttaaa
     3121 gagttacaag agaaaggcta tttactcaaa cgcccggacg gttcgctatg gcagtgggat
     3181 aaatggcagc caggtctggc gatttatgac tttaccaatc cggatgcctg caaatggtac
     3241 gccgacaaac tgaaaggtct ggtcgcgatg ggcgttgatt gctttaagac cgactttggc
     3301 gaacgtatcc caactgatgt tcagtggttt gacggttccg atccgcagaa aatgcataac
     3361 cattatgcgc acatctacaa cgaactggtg tggaacgtgc tcaaggacac cgttggtgag
     3421 gaagaagctg tcttgtttgc ccgctcggcc tccgtcggtg cgcagaaatt cccggtacac
     3481 tggggtggcg attgttacgc taactacgaa tcaatggcgg aaagcctgcg cggtggtttg
     3541 tctattggcc tttcaggttt tggcttctgg agccactata tcggcggctt tgaaaatacc
     3601 gctccggcgc acgtttacaa atgctggtgc gcgtttggtt tgctctccag ccatagccgt
     3661 ttacacggta gcaaatctta tcgtgtgccg tgggcctacg atgatgagtc ctgtgatgtg
     3721 gtgcgcttct tcacgcaact gaaatgccgc atgatgccgt atctgtatcg tgaagctgcg
     3781 cgtgcaaacg cgcggggtac gccgatgatg cgggccatga tgatggagtt cccggacgat
     3841 ccggcttgtg attaccttga ccgtcaatac atgttaggcg acaacgtgat ggttgcgccg
     3901 gtgttcactg aagcgggcga tgtgcagttc tacctgccgg aaggtcgctg gacacacctg
     3961 tggcacaacg atgagctcga cggtcgttgc tggcataaac agcagcacag cttcctgagt
     4021 ctgcccattt atgtgcgtga taacacccta ctggcgctgg gcaacaacga tcaacgtccc
     4081 gattacgcgt ggcacgaagg cacggcattc cacctcttta atctgcaaga cgggcatgaa
     4141 gccgtctgtg aagtgcccgc tgctgacgga tcggtgatct ttactttaaa agcagcacgt
     4201 actggcaaca cgattactgt gactggtgcg ggcgaggcga agaactggac actgtgcctg
     4261 cgcaatgttg tgaaagtaaa tggtctgcaa gacggttcgc aggctgaaag tgagcagggg
     4321 ctggtggtga agcctcaagg gaatgcgctg acaattacgt tgtaatctat tgatggaatg
     4381 ccgggtacgt ctgagtcgta cccggcgaga ttgatgttta ctgcaccagc tctgccgacg
     4441 taacttcacc gctggaaacg atgccagcat tcatggtttg agtcacttgc tgctttgcgg
     4501 cgttcacggc atgcaattgc ccgctaaccg taggtttcag cggggcattg gcctgaatat
     4561 ctccactggc ggtaagctga atattgccgt cgccagtcaa cggtaattca ggccatcccc
     4621 attgttgcaa aatattcacc ggcacaccgc gtccattcag gctgatatgg gtctgacgtt
     4681 gtggcgtttg tgaaacactg gcagtggctt ccagaatgcc tttttcagta aatgcactca
     4741 gttcgctgat attcaccgtg ctgctgttgg cggtcagcgc cagcgacggg cgacgaacat
     4801 caacacgatt gaatgtcgcg gcggcggcat tcagattcgc cgagccactc cagacgcccc
     4861 atttatgatc ggtaaccagc gtcaggttgg caccgtaacc atcgagcgtg gtgagctgcc
     4921 acgggaagtc agggtcgata tcaatgatca gattgcggct ggcgctaaat ctcttcagtt
     4981 gcaggctgtt taaccaaccg ggtgtcgttt ccatccacaa ctgttgccag tttttcggca
     5041 aggtatattc cagcccggca attgccgcat catcaaggat caacgttttc ccgtcacgca
     5101 gccagttccc tgacgttctg accatacccc cttcccagcg gctggtgaac tggcgcagcg
     5161 ctacgccctg cggggaaaat tccgcgttta taatcgggtc aaataaatgc agcgaaccat
     5221 aaatgaactc gctagcgttc atcaacagtt tgccttcttg tgtctgccag tcatctttac
     5281 tgaaggtcat gttgcgcaag ctgagatcga ggtcggtcac cgcccagtcc ggaccttgca
     5341 aatgagcatc gatcacttcc aggcgaccaa tctgcaacga cgggacagag cgtaatggcg
     5401 caaagaagtc ggttagcgat ttttcgcttt gtagacgtat atccgccatg cgcaggtttt
     5461 ccacttgcca gctgccgtcg gcgttacgct gcgcgtttcc ggttaatgtc ccgcgggcga
     5521 tgtcggcacc caggttagtc agcgtaacgc gatcgttatc aatactgcct tcaatcagta
     5581 cattggtggc aggaacatca ttgagcgaaa gcgatccggc actaaactga atctgcgcct
     5641 tcgtacccag cactttaccg gcttttggtg accacggaac tacgccgcca tttacccgct
     5701 gcgcgctcag tttccattcg ctattcgggc tattaaacgc catatcacgc agttgcagac
     5761 gatcggcttt gaacggtagc ggcgcggtct ggtcggtgag attcagcgtc ccgttttcca
     5821 gcaggatggt atcgacatgg cgtggttcgg tcagttgccg actgcttagc gcaatgtcga
     5881 cacttttggc caccagggtc gcgggctgac catcacgacc aaacgtgaca ttctccagca
     5941 cgatatgaga tggcgcggaa aaacggtgat ccatcgcccc gaaggccaga tgatagtcgc
     6001 tattctcgga aacccatgcg ctgatatgtt ctgctcccca gcgggtttgc agaagaaaat
     6061 agaggccagc gatcaccact aacagagcga tgagaatgta gagaagcagc ttcccaataa
     6121 atttcatggt cttccattcc gtgaaatgca cataagagag ttatgcacga tttacgcgca
     6181 atcctcaagg cgggaatggt gaaagaggtg agactgcggc ggtaattatc ttaccgccgc
     6241 cagtgaatta ctgtttttct ggtgggaaaa tcagattcag cacgatggca gtaataccgc
     6301 ccgcggcgat cccggaggag agcaggtttt tcagccattc aggggcaaac tgcaaaatca
     6361 gcggctgctg agacacgccc agaccaaccg ccagcgacag cgcgataatc agaatcgccc
     6421 gacggttcag cggctcacga gaaacgatac gcacaccgga ggcggcgatg gtgccaaaca
     6481 ttacaagcgt tgcgccgccc agaaccggtt ctggaatgtg ttgtacaaaa ccgctcactg
     6541 ccgggaacag acccagcacg atcaacatca gcgcgacgac aaaaccgaca tagcggctgg
     6601 caacaccagt caactggatc actccgttgt tttgcccgaa gcaggagttc gggaaggtgt
     6661 taaacaccgc cgaaacaaac gagttcaggc cgtttgccag cacgccgcct ttcaggcgtt
     6721 tcatgtacag cggaccggac actggctgtt cggaaacgtc agaggtcgac gtgatatcgc
     6781 caatggtttc cagcgaagtg atcataaaga ccagcatcag cggcagcagc agactccatt
     6841 caatgccaag accgtaatag agcggcgttg gcaccataat cagttcttgc gtcatcggtt
     6901 cgttgctttc tggcaacatg cccataaacc acgccagcgc atatccggcc gccatcgcaa
     6961 tcaccagtga ggccacgcgt aagtaagggt tacgttgacg gttaagcagg ataattaagg
     7021 ctaagaccac gcctgccagc agcagatttt tcggtgcgcc gaaggtgtta tcgctcatgg
     7081 ctgcgtaacc gccgccaatg gacgttaacc caacctgaat tagcgacagg ccgataatca
     7141 tcaccacaac gccagaaacc agcggcgtaa taatgcggcg cgccagatgc agaacgcggg
     7201 agatcaccat ctcggtgcaa cttgccagca tcaacgtgcc gaacaaagcc gccatcatgg
     7261 taggaacatc agcaccaccg gttttcagcg cggtaccgcc cataatcagc ggggcaacaa
     7321 agttgaagct ggtgccctga atagacaaca gcccggagcc aaccggaccc caggtcttaa
     7381 tttgaataat cgatgccaca ccggaggcaa acagcgacat actaataatg tgttgcgtgt
     7441 cttgtgccgg taaacccagc gcctggcaga ttaatagcgc tggcgtgatc accgcaacga
     7501 acatcgccag cagatgctga caggcggcaa acagggtttg aggaagcggc ggacgatctt
     7561 caagacggta aatcagttcg ctgttttgag tctgcgcaac cggttgcgca ttttctgact
     7621 cgagggtgga aacagacatc gaaaacaatc ccgtggtagc aaagcgggca ttttagctga
     7681 ccgaaagaga aaagcaaacg tttgccacat cctcatctaa atatttaaat gagataaatg
     7741 cactttttta tataactttt ggtatttttc tgcttaaaat ccatgccatt tgttcattaa
     7801 cagctgagaa tttgacccag gaaagcataa ctcgataccc gtcatagttc atgaagttgc
     7861 cactgcgcga tgaagtatga cgagtatgaa agagtgatgc ggatacaaag gagtaactat
     7921 gtttcatctc gatactttag caacgcttgt tgccgcaacg ctgacgttgc tgctcgggcg
     7981 taagttggtc cattccgtct cctttttgaa gaaatacacc ataccggaac ctgttgcggg
     8041 tggtttgttg gtggcgctgg cgctactagt actgaaaaaa agcatgggct gggaagtcaa
     8101 ctttgatatg tccctgcgcg atccgttaat gctggctttc ttcgccacca ttggcctgaa
     8161 cgccaacatt gccagtttgc gtgccggtgg gcgtgtggtt ggcatcttct tgattgtggt
     8221 tgttggtctg ttggtgatgc aaaatgccat tggcattggt atggctagcc tgttagggct
     8281 tgatccgctg atggggctgt tggccggttc tattacgctt tccggcggtc acggtacggg
     8341 cgctgcgtgg agtaaattgt tcattgaacg ttatggcttc accaatgcga cggaagtggc
     8401 gatggcctgt gcaacgttcg gtctggtgct gggcggcttg attggcggtc cggtggcgcg
     8461 ctatctggtg aaacactcca ccacgccgaa cggtattccg gatgaccagg aagtcccgac
     8521 ggcgtttgaa aagccggatg tgggacgcat gatcacctcg ttggtgctga ttgaaactat
     8581 cgcgctgatt gctatctgcc tgacggtggg gaaaattgtt gcgcaacttt tggctggcac
     8641 tgcttttgaa ctgccgacct tcgtctgtgt actgtttgtt ggcgtgattc tgagcaacgg
     8701 tctgtcaata atgggctttt accgcgtctt tgagcgtgcg gtatccgtgc tgggtaacgt
     8761 aagcttgtcg ttgttcctgg cgatggcgtt gatggggctg aaactgtggg agctggcttc
     8821 gctggcgctg ccgatgctgg cgattctggt ggtacagacc atcttcatgg cgttgtatgc
     8881 catcttcgtt acctggcgca tgatgggcaa aaactacgat gcggcagtgc tggctgcggg
     8941 tcactgtggt tttggcctcg gtgcaacgcc aacggcaatc gccaacatgc aggcgatcac
     9001 tgaacgcttt ggcccgtcgc acatggcgtt tttggtggtg ccgatggtcg gtgcgttctt
     9061 tatcgatatc gtcaatgcgc tggtaattaa gttgtatttg atgttgccga tttttgccgg
     9121 ttaaccgatg aagcggcggt cttctcaccg ccgcctttta cgcattcgag taacgttctg
     9181 tctccggcat ccagcgttct atcaaggctt ttgcctgttg tgggtaacgt tcgtgaatat
     9241 gtcgcgccag gcgctgaact tccgggatca tcgcctgatc gcgcagtaaa tccgccactt
     9301 taaattcagc attacccgtc tgacgcgtgc ctaacaattc gccagggccg cgaatctcca
     9361 gatctttttg cgcaatcaca aaaccgtcgt tactgtcgcg cagcacttgc aggcgaattt
     9421 gcgccgtttt agaaagcggc gttttgtaga gcagcacgca gtgagaagcc accgcgccac
     9481 gacctacgcg cccgcgcagc tggtgtaact gcgccagacc cagacgctca gggttttcga
     9541 taatcatcag gctggcgtta ggcacatcaa caccgacttc aataacggta gtggcaacca
     9601 gcagatgtag ctcaccttgt ttaaacgacg ccatcaccgc ctgtttctcg gctggtttca
     9661 tccgcccgtg taccaggcca acattcaatt ctggtagcgc cagtttcaac tcttcccagg
     9721 tagcttccgc cgcctgcgct tccagtaact ctgactcttc aatcaacgta caaacccagt
     9781 acgcctgacg accttcagtt atgcaggcat ggcgcacgcg gtcaatgatg tcggtacggc
     9841 gggtatcagg aatagcgacc gtagtcactg gcgtgcggcc tggcggcagc tcatctatca
     9901 ccgaggtatc gagatcggca tacgccgtca ttgccagcgt gcgggggatc ggcgtggcgg
     9961 tcatgatcaa ctgatgcgga tggaagcctt gctgctggcc tttctcccat aacgccagac
    10021 gctgatgcac gccaaagcga tgttgttcgt cgataatcac cagcgccaga ccgttaaact
    10081 gcacctgttc ctggaagatg gcgtgcgtac caacaatcat ctgcacctga ccgctggcga
    10141 tggcttcctg ctgagacagt cgcgctttgc ctttctgctt accggcgagc cagcccactt
    10201 cgataccgag cggttcaaac cagttgcgga agttattggc gtgctgttcg gcgagtaatt
    10261 cggttggtgc catcaatgcc acctgtttgc cgtgggcaat cgcacgcagc gcggcgaggg
    10321 cggcgaccag cgttttaccg gaacctacat cgccctgtac caggcgcatc atcggcacat
    10381 ccagcgccat atcgcgctcg atctccgcca ctacgcgtgc ctgtgcgccc gttggcttga
    10441 acggtaaggc tgcgaggagt ttatttttca gcgcatcatt ggcgctcagc ggctgggcat
    10501 gaaaacgctg tgctccggca cgtaaggcta acatgctgag gttgtgcgcc agcagttctt
    10561 ccagaatcag acgacgttgc gccggatgct gcccggtttc cagatcgcta agctgtagcg
    10621 tcggtggcgg gcggtgcaaa gtgcgcaacg cttccggtag cgtcatcatt ccttgtgaca
    10681 gttccggcgg caggagttct tcaatggcgc aggtgtcgag cagatccagc gcctggtcgg
    10741 ttaatttacg cagcgtggcc tgctttacgc cttccgttgt tggataaacc ggcgtgagcg
    10801 tttcctgtaa ttctggcgtg ctgagatcgc cctgcacgcg gtattccggg tggatcatct
    10861 ccgcaccata tttaccgcgc tttgcttcgc cataagccag tacacggcgg cccgtcgcca
    10921 ggctattttt cattgccgcg ctgaaattga aaaagcgcat ggtgaggatg ccggaaccgt
    10981 cgctgatctg gcaggtcatc atccgccgac cgccgaagga gatattgcag ttcagcactt
    11041 cgccttccac cgtggcataa acgcccggca gtagttctcc gatggggtag agatgggtgc
    11101 gatcttcgta gcgcagggga aggtgtaaga gtagatcctg cacggtatgc aggttgattt
    11161 tcgccagttt gttactaagt gctgcgccaa cgcccgttag ggaactgagt gggacagcat
    11221 ctaacaggcg acctgtcatg gcacttaccc tgcagcctgc atagtagccc accagtcggc
    11281 atcagcttcg atctcgcctt gctgattgac gtggggataa ggcaggcctt tgcgttttgc
    11341 gactttcgcc agcaccggat agccgccttc aaacaacagg cgttgttgct ctgcttccgg
    11401 caacatgctg ttttcacgca ggtacatgcc tgcattttgc cgctgacgct gggcttcgta
    11461 aagaatgagg gctgaggcaa cggaaacatt cagcgactgc accatgccga tcatcggaat
    11521 gatgatgtcc tgatccgcca gggccaatgc ttcctgcgtg atgcccgttt tctcctgtcc
    11581 catcaaaatg caggtcgggc gagtgtaatc aatttcgcgg aaatcgacag cgttatcaga
    11641 aagatgggtt gccagaatct gcatgccctg gcctttgaga tgagcgacgg catcgccaat
    11701 ggtgcggtgt gttttcacct gtacccagct gttactaccc gccgctgccg aagccatggt
    11761 gcgcatgcgg ctaccaggcc agacggcgtg aacttcatgt acgccaacgg catctgcggt
    11821 acgaataatc gcagaaacgt tatgaggttt gtggacctgc tccatgcaga cggtcagatc
    11881 aggctgccgc ctggcgagca tttcgcagat gcgtgcataa cgtgttgggt tcataaaaca
    11941 ttaatttcgg tttcgggtga ctttaatcac gtctggcatc acgcggattt tgcgcatgat
    12001 attcgccaga tgcacacggt cacgagcggt cagacgaata aaggcgctgt agacgcgacc
    12061 atctttctct tccgtattca aactttgaat attcgaagtc gtggtgttaa ttgccgccgt
    12121 caggtttgcc agcgcaccct gatgattgaa catctccacc ttgatttcgg tgatgaactc
    12181 ctgcgccgtc tctttatccc attccacagc cataaacttc tctggctctt tctggtagcc
    12241 acggatgtta cggcaggatt catggtggat caccagacct ttaccggggc tgacgtgggc
    12301 gataatcggg tcgccaggaa tagggcggca gcatttcgca aaggtgatca gcacgccatc
    12361 cgcgcctttg atcggcagat gcccgtggct ttgagtcgcc ggtggaatgg aggcgtcccc
    12421 atgttgtaga tttttcgcga ccaccacgct cattgcgtta ccaaggccga tttctgccag
    12481 cagatcgtca agcgttgcca gcttcatgcg atccagctcg cgctgaatat tttcctgcgg
    12541 gatttcattg agcttacggc taccacccaa agcatggttg agcagacgac ggcccaggct
    12601 tacagaatca tcacgcttga ggtttttcag caactgacga attttggcgc gcgctttcga
    12661 gctaacgaca aagttcagcc aagcggcatt cgggcgagcg cccggagcgg taatgatttc
    12721 aacggtctga ccgctagtaa gcggctgcga cagcgggtaa ggctggcggt cgacgcgtgc
    12781 gcccacgcag gcatggccga tatcggtatg cactgcataa gcgaagtcga cgggcgttgc
    12841 accggcaggc agctcgacaa tgcgcccttc cggtgtgaaa acgtaaatct catccgggaa
    12901 gagatcggat ttaacgctct cgataaattc aaacgaacta ccggcgctct gttgcagctc
    12961 cagcaggctt tgcatccagc gctgggcgcg tatttgtgcg gtagtactgg tttcgccgtg
    13021 ctctttataa gcccagtgcg cggcaacacc catctccgcc atctgatcca tatcttcggt
    13081 acggatctgg acctcaaccg gcacgccgtg cgggccaatc atcgaggtgt gcaacgactg
    13141 atagccgttc gcttttggaa tggcgatata gtctttcacg cggcccggac gcggcttgta
    13201 caggctgtgc atctggccca gcacgcgata acaggtgtca gaatcattga cgatcacgcg
    13261 gaaagcgtag atgtccatga ttgagtgaaa acgctgctct ttgagcacca ttttgcagta
    13321 aatcgaataa agatgctttt cgcgaccact gacgcggcac ggtattcccg cttcctgcaa
    13381 acgcccttcg atttcagaaa gaatcttctg gatcatctct ttacggttgc cgcgcgcggc
    13441 tttcaccact tctttgatta cgcgataacg gttgggatac agcgcctcaa aacccagctc
    13501 ttcgagttcg gttttaatgt ggtggatacc taaacggtgc gccagcgggc tgtaaatttc
    13561 gagagtttca cgggcgatgc ggcgacgttt gtccgggcga agtgagccca gcgtgcgcat
    13621 gttgtgggta cggtcggcaa gtttgatgag gatgacgcgg atatcctgca ccatcgccat
    13681 aatcatcttg cgaaagtttt cggcctgcgc ctctttctta tcgcggaact tgagtttatc
    13741 aagtttcgac accccctcta ccagctcggc gacgctttta ccaaaaagct gttccatatc
    13801 ctggtaggtg gcgggagtat cttcaatcac gtcatgcagc agcgccgcca tcagcgtttc
    13861 atagtcgagt ttcatctcgg ccagaatgca ggcaaccgct accgggtgcg tgatataggg
    13921 ttcaccgctt gaacgtgttt gcccctcgtg agcatcacgt gcaacgagat acgcctgccg
    13981 cagacgcttg atttggtctt ccggcaggta ggtttgaatc agttgattca ggctttcaaa
    14041 cagatacaag ggcgacccgc tttgtgatta acgacgacct tcagcaatag cggtaacggc
    14101 ttgtaattca gcggcttcct gctcttgctg ttcctggcgt tcgcgaacgt cgaggatctg
    14161 gttgttgatc agaccttctt cgatttcgcg cagcgcgatt acagtggttt tatcgttttc
    14221 ttccggtacc agcggatcct ttccgcctac ctgcatctga cgagcgcgac gcgcggcgac
    14281 cagtaccagg tcaaaacggt taccaatttt ctctacagcg tcctgaacag ttacgcgtgc
    14341 catacttaaa aagctccaca ggtgaagaaa tgactgggca tgatactgaa atcaggttca
    14401 gtctgccaac aatttgctga ttaaagcgtc atgacgctgc ttttggcggc tcatgcgcag
    14461 acgttcggcg cgaataatgg tcttcaaatc ggtcaacgcg gtatcgaagt catcattcac
    14521 aatcaggtaa tcatattcgt cgtaatggct catttctgca acagcttgcg ccatacgctt
    14581 tgcaatgacc tcttcgctgt cctgaccgcg accgcgtaga cggcggtcca gttcaatttt
    14641 agacggcggt aaaataaaga tactccgcgc gtgcggcatc ttctggcgaa tttgctgcgc
    14701 gccctgccag tcgatatcga gaaaaacatc gacaccggtc gccagtactt gctcaatggc
    14761 ctcacgcgaa gtgccatagt aattaccaaa aacttctgcg tgttcgagga acgcatctct
    14821 gctaatcatt tctttaaatt catcatgatt aacaaagaaa taatgttcac cgtggacttc
    14881 accaggacgc ggttggcgtg tggtgtgtga aacagaaacc tgggtgtcat acaacggttg
    14941 ggtttttaat aaagcctgaa tcaggctgga tttacccgcg ccactggggg cagaaacaat
    15001 ataaagcgtg ccttgagcca tgagtatctt tcgtatgtga ttagcgaaat aaagcctaca
    15061 tacgagctta ttatacacgg cgcggccatg tgacgtagcc cttgctcaca ctttttgcgc
    15121 aaagttgttg cgttttgcgt agctgcttcc gcatttgcct gtgatttact gcaataaaga
    15181 cgattctcag gaagcgtcct cgcagactcc gtttttgcca ctcggctttg ccttcaccac
    15241 gttgtatatc tgccagcctg actacagcgg aggtgaagat gaaagtatgg atggcgatat
    15301 taataagtat cttgtgctgg caatcatctg tgtgggcggt ctgtccggcc tggtcgccag
    15361 ccagagcaca ggaagaaatt ttccgccagc aacagcaaat aaaacagtgg gacgatgact
    15421 actggaagga aggaaaaagt gaggtggaag acggtgttta cgatcagtta agcgcccgtc
    15481 ttacgcagtg gcaacgctgc tttgtgagcg agccccgcga cgtgatgatg ccgcctttaa
    15541 atggtgcggt tatgcatccg gttgcccata cgggtgtacg caaaatggcg gataaaaacg
    15601 cattaagtct gtggatgcga gaacgtagcg atctttgggt gcagccaaaa gttgatggcg
    15661 ttgcggtaac cctggtttat cgggacggga aactgaacaa agcaatcagt cgcggtaatg
    15721 gcctgaaagg cgaggactgg acgcagaaag ttagcttaat ttccgctgtg ccgcaaaccg
    15781 ttagcgggcc tttagccaac agtacgcttc agggggaaat atttctccag cgcgaggggc
    15841 atatccaaca acaaatgggg ggaataaatg cccgcgcaaa agttgctggc ttgatgatgc
    15901 gccaggacga tagcgacacg ctgaattctc tgggcgtttt tgtctgggca tggccggatg
    15961 gaccgcagtt aatgtctgat cgtttaaaag agctggctac cgcaggtttt actctaacgc
    16021 agacgtatac ccgtgcggtg aaaaatgctg atgaagttgc gcgcgtacgc aatgagtggt
    16081 ggaaagcgga attacccttc gtcaccgatg gcgtagttgt acgagcggcg aaagagccag
    16141 aatcccgcca ttggctaccg ggccaggcag agtggctggt ggcctggaaa tatcaacctg
    16201 tagctcaggt tgccgaagtg aaggcgattc agtttgcggt gggtaagagc ggtaaaatat
    16261 cggtggttgc gtcactcgca tctgtcatgc tggatgataa aaaagtccag cgggtgaata
    16321 ttggttccgt caggcgctgg caggagtggg atatt
//
LOCUS       DAJVUP010000093        16354 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.093, whole genome shotgun sequence.
ACCESSION   DAJVUP010000093 DAJVUP010000000
VERSION     DAJVUP010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16354
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.093"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(399..1499)
                     /gene="chaA"
                     /locus_tag="OQQ75_002657"
     CDS             complement(399..1499)
                     /gene="chaA"
                     /locus_tag="OQQ75_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-potassium/proton antiporter ChaA"
                     /protein_id="HCS1976929.1"
                     /translation="MSNAQEAVKTRHKEISLIFPVLALVVLFLWGSSQTLPVVIAINL
                     LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL
                     MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA
                     LPAANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAH
                     SSVWHAIWLIIHLIAVIAVTKMNASPLETLLDSMNAPVAFTGFLVALLILSPEGLGAL
                     KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV
                     LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA"
     gene            1769..1999
                     /gene="chaB"
                     /locus_tag="OQQ75_002658"
     CDS             1769..1999
                     /gene="chaB"
                     /locus_tag="OQQ75_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation transport regulator ChaB"
                     /protein_id="HCS1976930.1"
                     /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKDDRRD
                     DASREETAHKVAWAAVKHEYAKGDDDKWHKKS"
     gene            2157..2852
                     /gene="chaC"
                     /locus_tag="OQQ75_002659"
     CDS             2157..2852
                     /gene="chaC"
                     /locus_tag="OQQ75_002659"
                     /EC_number="4.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415736.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-specific
                     gamma-glutamylcyclotransferase"
                     /protein_id="HCS1976931.1"
                     /translation="MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDE
                     GPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGG
                     RTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGCTVNAIVFIMDPRHP
                     EYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLA
                     ENYPDGVLRPGFA"
     gene            complement(2896..3249)
                     /gene="ychN"
                     /locus_tag="OQQ75_002660"
     CDS             complement(2896..3249)
                     /gene="ychN"
                     /locus_tag="OQQ75_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/F sulfur relay family protein YchN"
                     /protein_id="HCS1976932.1"
                     /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD
                     AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV
                     ELAQWTLSADKVLTF"
     gene            3433..4827
                     /gene="ychO"
                     /locus_tag="OQQ75_002661"
     CDS             3433..4827
                     /gene="ychO"
                     /locus_tag="OQQ75_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415738.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter invasin YchO"
                     /protein_id="HCS1976933.1"
                     /translation="MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLP
                     DLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHV
                     ESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYFTWSQLGLTQQDNGLVSNV
                     GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQT
                     ATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGL
                     NYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRY
                     DNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQ
                     ILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEYNQGQRVSSNEITLTLVE
                     PFDALSNDELRWEP"
     gene            complement(4828..5478)
                     /gene="narL"
                     /locus_tag="OQQ75_002662"
     CDS             complement(4828..5478)
                     /gene="narL"
                     /locus_tag="OQQ75_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator NarL"
                     /protein_id="HCS1976934.1"
                     /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG
                     IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG
                     ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRE
                     RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF"
     gene            complement(5471..7267)
                     /gene="narX"
                     /locus_tag="OQQ75_002663"
     CDS             complement(5471..7267)
                     /gene="narX"
                     /locus_tag="OQQ75_002663"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarX"
                     /protein_id="HCS1976935.1"
                     /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA
                     HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDEQLAQLQGL
                     QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA
                     VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN
                     MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ
                     NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL
                     ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA
                     TIARELHDSIAQSLSCMKMQVSCLQMQGDALPASSRELLSQIRNELNASWAQLRELLT
                     TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS
                     NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD
                     CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE"
     gene            7606..8997
                     /gene="narK"
                     /locus_tag="OQQ75_002664"
     CDS             7606..8997
                     /gene="narK"
                     /locus_tag="OQQ75_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate transporter NarK"
                     /protein_id="HCS1976936.1"
                     /translation="MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC
                     LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR
                     RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK
                     QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI
                     WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG
                     FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL
                     LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD
                     ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV
                     VITWAVYGRHSKK"
     gene            9513..13235
                     /locus_tag="OQQ75_002665"
     CDS             9513..13235
                     /locus_tag="OQQ75_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HCS1976937.1"
                     /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY
                     LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR
                     SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY
                     DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT
                     KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY
                     TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG
                     FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN
                     VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA
                     EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG
                     CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV
                     TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD
                     YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ
                     GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM
                     NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHD
                     SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERAYPATYERFTSIGPLMEKIGNGG
                     KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW
                     AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV
                     HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNPEKALN
                     FLTPHQKWGIHSTYSDNQLMLTLGRGGPVVWLSEADAKELGIADNDWIEVYNSNGALT
                     ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYAH
                     LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGND"
     gene            13253..14791
                     /gene="narH"
                     /locus_tag="OQQ75_002666"
     CDS             13253..14791
                     /gene="narH"
                     /locus_tag="OQQ75_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HCS1976938.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV
                     ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE
                     PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN
                     FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR
                     GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD
                     ADAIERAASTENEKDLYQRQLEVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA
                     MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLAN
                     LLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA
                     NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT
                     EPHP"
     gene            14788..15498
                     /gene="narJ"
                     /locus_tag="OQQ75_002667"
     CDS             14788..15498
                     /gene="narJ"
                     /locus_tag="OQQ75_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HCS1976939.1"
                     /translation="MIELVIVSRLLEYPDAALWQHQQEMFEVIAASKNLSKEDAHALG
                     IFLRDLTAMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG
                     LQLNSRELPDHLPLYLEYLSQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVMFDL
                     LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR
                     FAGAVAPQYLNITTGGQH"
     gene            15498..16175
                     /gene="narI"
                     /locus_tag="OQQ75_002668"
     CDS             15498..16175
                     /gene="narI"
                     /locus_tag="OQQ75_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HCS1976940.1"
                     /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD
                     RKGMNLASNLFHIGILGIFAGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL
                     IGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV
                     GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY
                     QLVRARH"
BASE COUNT         3932 a         4089 c         4376 g         3957 t
ORIGIN      
        1 gccttgttgt aatgacaaca ttttgcggct attcttgaag tgtctggttt caagattagc
       61 ccccgttttg ttgtcaggtt ttacctctca acgtgcgggg gttttctctt tccagcaacc
      121 aatgccacca gggataaagc ccccgcaaca ttgcgcctca ccggataatt ccggcttggt
      181 gtggatacta cgtctcaatt catcttcact tcatccctga aatgtttgca ataaagagta
      241 cattccggct tttcaacagc tgttgcagtg gtttcgtgca ggttgtggta caggctcgca
      301 attctgatta acgagctgtc caggtagtat gaagaaatac aataagcagg aatttatctt
      361 atctcccccg atttccgtca tcggaggaga tataactgtc aggcaaatat cgtcatcaaa
      421 taggcggcaa acagtgccag atgcgctgcg ccattgagca cgttagtacg tccggtggag
      481 aaggagatat ggcacagcac taaagaggcc accatcacca ccatttctgg cgcaccaagt
      541 gcaaactgta attcgttacc cgtcataaag gcaattagcg tgacgacagg tacggtaagt
      601 gaaatggttg ctaacactga accaaagaac agattcatcg cgcgctggac ctggttgttc
      661 aacactgctt ttaacgcacc taaaccttcc ggcgacagaa tcaacagagc caccaggaag
      721 ccagtaaagg cgacaggggc attcatgctg tcgagcaatg tctccagcgg gctggcattc
      781 attttggtga ctgcaataac ggcaatcaga tggataatca accagatagc atgccacacg
      841 ctgctatggg cagacggttt accgtgatgc gggtcgtcgt catcactgtc atcttcgtgc
      901 tcgtagacaa acaaactttg atgcgttttg gtctggatca gcaaaaatac gccatacatt
      961 gccgcagaaa ttaatgctac cagtaacgcc tgaccggttg aaaaattcgc cgcaggcaga
     1021 gccattggaa ataccagtac gattatcgcc agggggaaca gcgcaattaa atactgcttg
     1081 ataccaaaca gattcatata ttgggtggca aacttacgac cgcccaacaa taatgaaaag
     1141 ccaaccagcc caccggtaac aatcataatg attgaataga gcgtatcacg cattagcgtt
     1201 ggcgcggcgt cgccggttgc cattaaagct gaaatcaaac tgacttcaag aataaccact
     1261 gaaaggctaa gaataagcga accgtaaggt tctcccaggc gatgggctaa tacgtccgca
     1321 tgacggacaa cactaaaggc gctacttaaa ataccaataa gcgcaagaag attgatggca
     1381 atgaccactg gtagtgtctg gctgcttccc cacaggaaca gcactaccag cgccagaacc
     1441 gggaaaataa gcgaaatctc cttgtggcgg gtttttaccg cctcttgagc atttgacatt
     1501 atggttatcc ctttgcagat gaatttatcg aaaatgtaaa aaataggtag gaaaaataac
     1561 agaaagtgtc tggatatcgg taacatttta cgaattttta ccccactgtc gattttttac
     1621 tcattgggac ataaaaataa gtattacgtt tagacaatgt ttgttttagc gtttcttaag
     1681 aacagtctga catgaaaatt cttatgtttt ggcaagagta gatattgttg accacactta
     1741 atgttcaact ttgtaaaagg agtcaacgat gccgtataaa acgaaaagcg atctgccgga
     1801 aagcgtaaag cacgttctac cgtctcatgc ccaggatatc tataaagaag cgttcaacag
     1861 cgcatgggat caatataaag ataaagacga tcggcgtgat gacgccagtc gcgaagaaac
     1921 cgcgcataaa gtggcctggg ctgctgtgaa gcatgaatat gccaaagggg atgatgataa
     1981 atggcataaa aaatcgtaaa accggtagct tagttaaagc tattcgtgcg gtgttgcctt
     2041 gcaagtggtc cgtggattgc atattgtccc gttagtggtt tcaaaatgag cagtaaaaat
     2101 gtccggaaga caccaaaaag ttgtcgcagg gaagtatgca gtggcggagg tgtaaggtga
     2161 taacgcgtga tttcttgatg aatgccgatt gtaaaacggc atttggtgcc attgaagaat
     2221 cactcttatg gtcagcagag caacgagcgg cttcgctggc ggcgacgctg gcttgtcgac
     2281 ctgatgaggg accggtgtgg atcttcggtt atggatcgtt gatgtggaat ccggcactgg
     2341 agtttaccga gtcgtgcacc ggtacactgg ttggatggca tcgcgcgttt tgcctgcgcc
     2401 tgaccgccgg gcgcgggact gcgcaccagc cgggacggat gcttgcactg aaagagggcg
     2461 gacgcactac aggcgtcgcc tatcgactgc cagaagagac gctggagcag gaactaaccc
     2521 tgttgtggaa gcgcgagatg attaccggct gttatctgcc aacctggtgt cagcttgatc
     2581 ttgatgatgg atgcacagta aacgccattg tgtttattat ggacccgcga catccagaat
     2641 atgaatctga cactcgcgct caggtcatcg cgccgttgat tgcggcggcg agcggtccgc
     2701 tgggaaccaa cgcacaatac ctgttttcac tggaacagga gcttatcaaa ctgggaatgc
     2761 aggacgatgg gctgaatgat ttgctggtat cggtaaaaaa actgctggcg gagaattatc
     2821 cggatggtgt gttacggccg ggattcgcct gagtaaactt cccgcatagt ggggcgtcag
     2881 acgccccctc aaacattaaa atgtgagcac tttatcggct gacagcgtcc attgcgccag
     2941 ttccacaaga gtaccgattt ccaccccatc aatcagagga agtgtactaa tcccgcgccc
     3001 gtcggtacag gttttgcaca atttcaccgg tacattctga gcggtaagga tctccagcat
     3061 ttgctgaatg ttgtagcctt cccctggttt ttgcccgcgc aacccggctg tgaccgcatc
     3121 agacatgagg aacagacgca gatccagatt gctctcctgc tctcgtaacg caatggccag
     3181 ccgcaagctg ttaaacaagg attcgctccc gtaaggtgcg ccattggcaa cgatcacgat
     3241 tttttgcatt atttactcct gtattcaggg aattagacac tcatcttcta tcttactgct
     3301 tctgcagcgt ctgaccaatc ggtcacattt ttaaggattt tcctgaaagc gcgagaaaat
     3361 acgacaaaag ttgccagtaa tcgttattct ttaaggctat ggttttcatt attaccggaa
     3421 gttaccgacg ttttgagccg tttcgttcct cgcattatcc cgttttattt actcttgctt
     3481 gtagcaggcg gtacagctaa cgcacaatct accttcgagc aaaaagcggc aaatcccttt
     3541 gataataaca atgatggtct gccggattta ggcatggctc ccgaaaatca tgatggggaa
     3601 aaacactttg ctgaaattgt gaaagatttc ggcgaaacca gtatgaatga taacgggctg
     3661 gatactggcg agcaggcaaa agctttcgca ttgggaaaag tccgcgacgc gcttagtcaa
     3721 caggttaatc agcacgtaga gtcctggcta tcaccgtggg gaaatgccag tgttgacgtc
     3781 aaagtggata acgaaggaca tttcaccggc agtcgtggaa gctggtttgt gccgttacaa
     3841 gataatgatc gttatttcac ctggagccag cttggtctta ctcagcagga taatgggttg
     3901 gtgagcaatg tgggcgttgg gcaacgctgg gcgcgtggca actggctggt gggttataac
     3961 actttttatg acaacttgct ggacgaaaat cttcagcgag cgggctttgg tgccgaagcg
     4021 tggggcgaat atttgcgatt attggcaaac ttttatcagc cgtttgctgc atggcatgaa
     4081 cagacagcca cgcaggaaca acggatggcg cgcgggtacg acctgacagc tcggatgcgc
     4141 atgccgttct atcaacacct caataccagt gtcagcctag aacagtattt tggtgatcgt
     4201 gttgatttgt ttaactctgg tacgggttat cacaatcccg tcgcgttgag tctgggatta
     4261 aattacaccc ctgtgccatt agtcactgtg acggctcagc ataaacaggg tgaaagtggc
     4321 gagaatcaaa ataacctcgg gctgaatctt aattaccgct ttggtgtacc gctcaaaaaa
     4381 caactttctg cgggcgaggt tgccgaaagt cagtcgttac gtggtagtcg ctatgacaat
     4441 ccgcagcgaa ataatctacc gactcttgag taccgacagc gaaaaacgtt aacggtgttt
     4501 ctggcgacac cgccgtggga tctaaaacct ggcgaaacag tgccgctgaa attacaaatc
     4561 cgcagtcgtt acggtattcg gcaactgatt tggcagggcg atacgcagat attaagtttg
     4621 acgccgggcg cacaagccaa cagcgcggag ggctggacgc tgatcatgcc tgactggcag
     4681 aacggggaag gggcaagcaa tcactggcga ttgtcggtgg tggtggaata taaccagggg
     4741 cagcgtgtct cctccaatga gatcacgcta acgcttgtcg aaccgttcga tgcattgtca
     4801 aacgacgaac tgcgctggga accgtaatca gaaaatgcgc tcctgatgca cccataccgc
     4861 tgcttccacg cgagacttga gcttcatttt cttcagcatg tgcttgacgt gcacttttac
     4921 tgtgctttcg gtgatatcca ggcggcgggc aatcatcttg ttcggcaaac cctgggcaat
     4981 cagcttgaga atatcgcgct cgcgtggggt taactggtta acatcgcgct cagtagtggc
     5041 acggttagcg cgcaagctgg cggccagaac aggcgttaat gcttcgctta ataccatttc
     5101 gccagcagct gcctgatgca atgctttcag cagatcttcc ggttccatat cttttaacag
     5161 ataaccatcc gcgccgcgtt tcagtgcggt gaccacatct tcttcatggt tagagacgct
     5221 gaataccaca atgcgccctg agagggactt ttcgcgcagt ttatccagcg tttccagacc
     5281 gttcatgccg ggcatattga gatctaacag gatcagatcg ggatcaagag actccgccag
     5341 ttcaataccc tgttcgccat tactcgcttc gccaaccacg gtgatatctg gtgccatact
     5401 gataagctgt tttacgccag ttcgcagcat cgggtgatcg tcgatcagca ggatagtagc
     5461 cggttcctga ttactcatgg gtatctcctt ggacgtctgt gaaagttttt tcgggaataa
     5521 aggtgaccac cacttcggtg ccacctgatt cacgacggcg gacgcggcaa tcgcctcgta
     5581 aactttgcgc acggtcgcgc attattatca tgccgtagtg attgctgcgg atggcatttt
     5641 caggcacgcc gcagccgtta tcttggacgg tcagtttgac ctgattatcg ttttgcgcca
     5701 ccgtcaccac gacctcactc gcttgcgaat gtttgagggc gttacttaat gcctcacggg
     5761 caatttgcaa caagtggatt gcctgatgtg aaggcaccag acgaggcggc aattgataat
     5821 ccagcttcac cgggaagcca aatttggcgc tgtactcttc gcaactcgcc tccagcgccg
     5881 gacgtaatcc aggctcggtg agctgcaagc ggaatgtggt gagcaattca cgcaactgcg
     5941 cccaggatgc attcagttcg ttacggatct gacttaacag ttcgcggctg cttgctggca
     6001 gcgcatcgcc ctgcatctgt aaacaactca cctgcatctt catgcaagag agagattggg
     6061 caatagaatc atgcagttcg cgcgcaatgg tggcacgctc ttccatcacg atcaactgtt
     6121 gctgacgttc ctgatggcga tccagcgcca gcgtggcggt gagttgttca accagggtat
     6181 ccaccagttg ttgttgatca tggctaagat gacgcccctg cggcagggtc gccagcaaaa
     6241 taccgtactg cgtatgagag tcagccagcc gccacttcag ggttgtgccg cgatcaccaa
     6301 cgggtaatac gccgcgcggg cagagctggc agcctttatc atcacaagtc atatctggct
     6361 ggcaggtaaa ctcctgatga ttctcttcat catcagtgtc atacacccgc agttcgatat
     6421 cacgtagcag ggttaaattc tgtaagccgt tgagtacagg tgacaggcgt tcacacagcg
     6481 gggcgcggga atgcaaacgg cggttagcct gccataaaaa agagaggatc tgatttttat
     6541 gctccagccc ggcggttttc tcctgaaccc gctgctcaag tacggcataa ctttcggcca
     6601 gttctgcaga catattgttc aatgcagttc caagcatcgc catttcgttg cgcccgctga
     6661 tgttcgcgcg ttgggtaaaa tcgcgatgac tgacggcact cgccattgcc agcagttgcc
     6721 gccacggttg tagcagtcgc gcccgcaacc agataatagt gaacaccagt aaaagtgcca
     6781 taaataccgc cattacccga tggaccagta ccactgtctc aatgcgcatt tccgtggtgc
     6841 ggtcaaaacc agataccagc tgatcaagcc cggcaacaaa ctggctgaca tccgctgaca
     6901 ccgtttcgcg gttttgtgca cgcatcagtg cagggatcag ttcattacgc cagtaatctt
     6961 gtaaaccctg taattgcgcc agttgttcgt ctcgttctgc tgctcgagtt aactcggcgc
     7021 taaatgccgt ttgttccatc tctttaatta agggcttgtc tttctcactt aatggcactg
     7081 ccgccaacag acggtaactt tgcatgcgca gcgatcccgc tttgttgatc gcatgggcgc
     7141 tgccctgaac gccttgcacc agccagccag aaaccgccat ccctgccagt ccaatagcag
     7201 tagaaagcaa cacaataagc gcaacctgat taaccagggt gagcggagag agacaacgtt
     7261 taagcatgta aacctcttcc ttcaggcttt aaatgagcaa taaccttaat gaatgtgacg
     7321 atacattctg gaatggcagt attctcggct attggctgaa gtatacccat acccggaaag
     7381 agttactcct tatttgccgt gtggttagtc gctttacatc ggtaagggta gggattttac
     7441 agcaccgtga aaaatctcat aatttttatg aaatcactgt actcactatg ggtaatgata
     7501 aatatcaatg atagataaag ttatcttatc gtttgattta catcaaattg cctttagcta
     7561 cagacactaa ggtggcagac atcgaaacga gtatcagagg tgtctatgag tcactcatcc
     7621 gcccccgaaa gggctactgg agctgtcatt acagattggc gaccggaaga tcctgcgttc
     7681 tggcaacaac gcggtcaacg tattgccagc cgtaacctgt ggatttccgt tccctgtctg
     7741 ctgctggcgt tttgcgtatg gatgttgttc agcgctgttg cggtgaactt accgaaagtc
     7801 ggttttaatt ttacgaccga tcagctattt atgttgactg cgctgccttc ggtttctggc
     7861 gcgttattac gtgttccata ctcctttatg gttcctatct tcggtggtcg tcgctggacg
     7921 gcgttcagca ccggtattct gattattcct tgcgtctggc tgggttttgc cgtgcaggat
     7981 acctccacgc cttatagcgt cttcatcatc atctctctgc tatgcggctt tgctggcgcg
     8041 aacttcgcat ccagtatggc aaacatcagc ttcttctttc cgaaacagaa gcagggtggc
     8101 gcgctgggtc tgaatggtgg tctgggaaac atgggcgtca gcgtcatgca gttggttgct
     8161 ccgctggtgg tatcactgtc gattttcgca gtatttggta gccagggcgt caaacagccg
     8221 gatgggactg agctgtatct ggcgaatgcg tcctggatat gggtgccgtt ccttgccatc
     8281 ttcaccattg cggcgtggtt tggcatgaac gatcttgcta cctcgaaagc ctccatcaag
     8341 gagcagttgc cggtactcaa acggggtcat ctgtggatta tgagcctgct gtatctggca
     8401 accttcggct ccttcatcgg cttctccgcg ggctttgcaa tgctgtcaaa aacgcagttc
     8461 ccggatgttc agattctgca atacgctttc ttcgggccgt ttattggtgc gctggcgcgt
     8521 tctgcaggtg gtgcattatc tgaccgtctg ggcggaactc gtgtcacgct ggtgaacttt
     8581 attctgatgg cgattttcag cggcctgctg ttcctgacct taccgactga cgggcagggc
     8641 ggaagcttca tggcgttctt cgcggtcttc ctggcgctgt tcctgacagc tgggctgggt
     8701 agtggttcca ctttccagat gatttcagtg atcttccgta aactgacaat ggatcgcgtg
     8761 aaagcagaag ggggttctga cgaacgtgcg atgcgtgaag cggcaaccga cacggcggcg
     8821 gcgctgggtt tcatctctgc gattggcgcg attggtggct tctttatccc gaaagcgttt
     8881 ggtagctcgc tggcattaac gggttcgcca gtcggcgcaa tgaaggtatt tttgattttc
     8941 tatatcgcct gcgtagtgat tacctgggcg gtatatggtc ggcattctaa aaaataaacc
     9001 gttactcgtc atactccggg ttacatgtgc tgcggctgcg ttcattcacc ccagtcactt
     9061 actttagtaa gctcctggga ttcattcact tgccgccttc ctgtaaaccg aattatatag
     9121 agtaaaatat ttgattatcc tttgcgcggc atgatgtcgc gcttttttta agcgttattt
     9181 agttacaaca tactaatgtt atatggttta tttcgccgga tttcattaag agccattaat
     9241 atgttaccca tggggaatac tccttaatac ccatctgcat aaaaatctta atagtttaaa
     9301 taactacagg tataaaacgt cttaatttac agtctgttat gtggtggctg ttgattatcc
     9361 taaaggggta tcttaggaat ttactttatt tttcatcccc atcactcttg atcgttatca
     9421 attcccacgc tgtttcagag cgttaccttg cccttaaaca ttagcaatgt cgatttatca
     9481 gagggccgac aggctcccac aggagaaaac cgatgagtaa attcctggac cggtttcgct
     9541 acttcaaaca gaagggtgaa acctttgccg atgggcatgg ccagcttctc aataccaacc
     9601 gtgactggga ggatggatat cgccagcgtt ggcagcatga caaaatcgtc cgctctaccc
     9661 acggggtaaa ctgcaccggc tcctgcagct ggaaaatcta cgtcaaaaac ggtctggtca
     9721 cctgggaaac ccagcagact gactatccgc gtacccgtcc ggatctgcca aaccatgaac
     9781 ctcgcggctg cccgcgcggt gccagctact cctggtatct ttacagtgcc aaccgcctga
     9841 aatacccgat gatgcgcaaa cgcctgatga aaatgtggcg tgaagcgaag gcgctgcata
     9901 gcgatccggt tgaggcatgg gcttctatca ttgaagacgc cgataaagcg aaaagcttta
     9961 agcaggcgcg tggacgcggt ggatttgttc gttcttcctg gcaggaggtg aacgaactga
    10021 tcgccgcatc taacgtttac accatcaaaa actacggccc ggaccgtgtt gctggtttct
    10081 cgccaattcc ggcaatgtcg atggtttctt acgcatcggg tgcacgctat ctctcgctga
    10141 ttggcggtac ttgcttaagc ttctacgact ggtactgcga cctgcctcct gcgtctccgc
    10201 aaacctgggg cgagcaaact gacgtaccgg aatctgctga ctggtataac tccagctaca
    10261 tcatcgcctg gggttcaaac gtgccgcaga cgcgtacccc ggatgctcac ttctttactg
    10321 aagtgcgtta caaaggcacc aaaactgttg ccgtcacacc agactacgct gaaatcgcca
    10381 aactgtgcga tctgtggctg gcaccgaaac agggcaccga tgcggcaatg gcgctggcga
    10441 tgggccacgt aatgctgcgt gaattccacc tcgacaaccc aagccagtat ttcaccgact
    10501 atgtgcgtcg ctacaccgac atgccgatgc tggtgatgct ggaagaacgc gacggttact
    10561 acgctgcagg tcgtatgctg cgcgctgctg atctggttga tgcgctgggc caggaaaaca
    10621 atccggaatg gaaaactgtc gcctttaata ccaatggcga aatggttgcg ccgaacggtt
    10681 ctattggctt ccgctggggc gagaagggca aatggaatct tgagcagcgc gacggcaaaa
    10741 ctggcgaaga aaccgagctg caactgagcc tgctgggtag ccaagatgag atcgctgagg
    10801 taggcttccc gtactttggt ggcgacggca cggaacactt caacaaagtg gaactggaaa
    10861 acgtgctgct gcacaaactg ccggtgaaac gcctgcaact ggctgatggc agcaccgccc
    10921 tggtgaccac cgtttatgat ctgacgctgg caaactacgg tctggaacgt ggcctgaacg
    10981 acgttaactg tgcaaccagc tatgacgatg tgaaagctta taccccggcc tgggccgagc
    11041 agattaccgg cgtttctcgc agccagatta ttcgcatcgc ccgtgaattt gccgataacg
    11101 ctgataaaac gcacggtcgt tcgatgatta tcgtcggtgc ggggctgaac cactggtatc
    11161 acctcgatat gaactatcgt ggtctgatca acatgctgat tttctgcggc tgtgtcggtc
    11221 agagcggggg cggctgggcg cactatgtag gtcaggaaaa actgcgtccg caaaccggct
    11281 ggcagccgct ggcgtttgcc cttgactggc agcgtccggc gcgtcacatg aacagcactt
    11341 cttatttcta taaccactcc agccagtggc gttatgaaac cgtcacggcg gaagagttgc
    11401 tgtcaccgat ggcggacaaa tcccgctata ccggacactt gatcgacttt aacgtccgtg
    11461 cggaacgcat gggctggctg ccgtctgcac cgcagttagg cactaacccg ctgactatcg
    11521 ctggcgaagc ggaaaaagcc gggatgaatc cggtggacta tacggtgaaa tccctgaaag
    11581 agggttccat ccgttttgcg gcagaacaac cagaaaacgg taaaaaccac ccgcgcaacc
    11641 tgttcatctg gcgttctaac ctgctcggtt cttccggtaa aggtcatgag tttatgctca
    11701 agtacctgct ggggacggag cacggtatcc agggtaaaga tctggggcaa cagggcggcg
    11761 tgaagccgga agaagtggac tggcaggaca atggtctgga aggcaagctg gatctggtgg
    11821 ttacgctgga cttccgtctg tcgagcacct gtctctattc cgacatcatt ttgccgacgg
    11881 cgacctggta cgaaaaagac gacatgaata cttcggatat gcatccgttt attcacccgc
    11941 tgtctgcggc ggtcgatccg gcctgggaag cgaaaagcga ctgggaaatc tacaaagcca
    12001 tcgcgaagaa attctccgaa gtgtgcgtcg gccatctggg taaagaaacc gacatcgtca
    12061 cgctgcctat ccagcatgac tctgccgctg aactggcgca gccgctggat gtgaaagact
    12121 ggaaaaaagg cgagtgcgac ctgatcccag gtaaaaccgc gccacacatt atggtcgtag
    12181 agcgcgctta tccggcgact tacgaacgct ttacctctat cggcccgctg atggagaaaa
    12241 tcggtaatgg cggtaaaggg attgcctgga acacccagag cgagatggat ctgctgcgta
    12301 agctcaacta caccaaagcg gaaggtccgg cgaaaggcca gccgatgctg aacaccgcaa
    12361 ttgatgcggc agagatgatc ctgacactgg caccggaaac caacggtcag gtagccgtga
    12421 aagcctgggc tgccctgagc gaatttaccg gtcgtgacca tacgcatctg gcgctgaata
    12481 aagaagacga gaagatccgc ttccgcgata ttcaggcaca gccgcgcaaa attatctcca
    12541 gcccgacctg gtctggtctg gaagatgaac acgtttctta caacgccggt tacaccaacg
    12601 ttcacgagct gatcccatgg cgtacgctct ctggtcgtca gcaactgtat caggatcacc
    12661 agtggatgcg tgatttcggt gaaagcctgc tggtttatcg tccgccgatc gacacccgtt
    12721 cggtgaaaga agtgataggc cagaaatcca acggcaaccc ggaaaaagcg ctcaacttcc
    12781 tgacgccgca ccagaagtgg gggatccact ccacctacag cgacaaccag ttgatgctga
    12841 ccttaggtcg cggtggcccg gtggtctggc tgagcgaagc cgatgccaaa gagctgggca
    12901 ttgccgataa cgactggatt gaagtttaca acagcaacgg tgcgctgact gcccgtgcgg
    12961 ttgtcagcca gcgtgttccg gcagggatga ccatgatgta ccacgcgcag gaacgtatcg
    13021 ttaacctgcc gggttcggaa attactggcc agcgtggggg gatccacaac tcggtcaccc
    13081 gtatcacgcc gaaaccgacg catatgattg gtggctatgc ccatctggca tacggcttta
    13141 actactacgg caccgtaggt tctaaccgcg atgagtttgt tgtagtgcgt aagatgaaga
    13201 acattgactg gttagatggc gaaggcaatg actaggtaca ggagagcgta aaatgaaaat
    13261 tcgttcacaa gtcggcatgg tgctgaatct cgataagtgc atcggctgcc acacctgttc
    13321 agttacctgt aaaaacgtct ggaccagccg tgaaggcgtg gagtacgcgt ggttcaacaa
    13381 cgtggaaacc aagccgggtc agggcttccc gactgactgg gaaaaccagg aaaaatacaa
    13441 aggcggctgg atccgtaaaa tcaacggcaa actgcagccg cgcatgggta accgtgccat
    13501 gttgctgggt aaaatcttcg ctaacccgca tctgccgggg atcgacgatt attacgagcc
    13561 gttcgatttt gactatcaga acctgcatac cgcgccggaa ggcagcaaat cgcagccgat
    13621 tgcccgtccc cgttcgctga ttaccgggga acggatggcg aaaatcgaaa aagggccgaa
    13681 ctgggaagat gacctgggtg gtgagtttga caaactggcg aaagacaaga acttcgacaa
    13741 catccagaag gcgatgtata gccagttcga aaacaccttt atgatgtatt tgccgcgcct
    13801 gtgcgaacac tgcctgaacc cggcatgtgt ggcgacctgc ccgagcggtg cgatttacaa
    13861 gcgtgaagaa gatggcatcg tcctgatcga ccaggataaa tgccgtggct ggcgtatgtg
    13921 catcaccgga tgcccgtaca aaaaaatcta cttcaactgg aagagcggta agtctgagaa
    13981 gtgcatcttc tgctatccgc gtattgaagc gggtcagccg accgtgtgct cagaaacctg
    14041 tgtcggtcgt atccgttatc ttggcgtgct gctgtacgat gccgacgcga ttgaacgtgc
    14101 agccagcacc gagaacgaga aagatcttta ccagcgtcag ctggaggtgt tcctcgatcc
    14161 gaacgatccg aaagtcatcg agcaggcgat taaagacggt attccgctga gcgttattga
    14221 agccgcacag cagtcgccgg tttataaaat ggcaatggaa tggaaactgg cgctgccgct
    14281 gcatccagaa tatcgcacac tgccgatggt ctggtacgtg ccgcctctgt ctccgattca
    14341 gtctgcagca gacgcgggtg agctgggtag caacggcatt ctgccagacg tcgaaagctt
    14401 gcgtattccg gtacagtatc tggcgaatct gctgaccgcc ggtgatacca aaccggtact
    14461 gcgcgcactg aaacgtatgc tggcgatgcg tcattacaaa cgtgctgaaa ccgttgacgg
    14521 taaagttgat acccgtgcgc tggaagaggt cggtctgacc gaagcccagg cacaggagat
    14581 gtaccgttat ctggctattg ctaactacga agatcgcttt gtggtgccga gtagtcatcg
    14641 tgaactggca cgggaagcct tcccggagaa aaatggctgc ggctttacct ttggtgatgg
    14701 ctgccacggc tcagatacca aattcaatct gttcaacagc cgtcgtatcg atgccatcga
    14761 tgtgaccagc aaaacggagc cgcatccatg atcgaactcg tgattgtatc gcgtctcctt
    14821 gaatatccgg atgctgcctt atggcagcat caacaagaga tgtttgaggt gattgctgcg
    14881 tcgaaaaatc tgtcgaaaga agatgcccat gcgctgggca ttttcctgcg cgatttaacg
    14941 gcgatggatc cgctcgatgc ccaggcccag tacagcgaac tgttcgaccg tggccgcgcc
    15001 acgtcactgt tgctatttga acatgttcac ggtgaatccc gtgaccgcgg ccaggcgatg
    15061 gtggacctgc tggcgcagta cgagcagcac ggcttgcagt taaacagccg cgaattaccg
    15121 gaccatctgc cgctgtatct ggagtacctg tcgcagctgc cgcaaagcga agccgtggaa
    15181 ggtttgaaag atatcgcgcc gattctggca ttgctgagcg cgcgtctgca acagcgtgaa
    15241 agccgttatg ccgtgatgtt tgatctgctg ctgaaattgg ccaataccgc tatcgacagc
    15301 gacaaagtgg cggaaaaaat tgccgacgaa gcgcgcgatg atacgccgca ggcgctggat
    15361 gctgtctggg aagaagagca ggttaaattc tttgctgaca aaggctgcgg tgattcagca
    15421 atcactgctc atcagcgtcg ctttgccggt gccgtcgcgc cgcaatatct gaatatcacc
    15481 accggaggac agcactaatg caattcctga atatgttctt ctttgatatc tacccgtaca
    15541 tagccggggc ggtcttcctg attggtagct ggctgcgtta tgactacggg cagtacacct
    15601 ggcgcgcggc gtccagccag atgctggatc gcaaagggat gaacctggcg tcgaacctgt
    15661 tccatatcgg tattctgggg atttttgctg gtcacttctt cggtatgctg acgccgcact
    15721 ggatgtatga agcctggctg ccgattgaag tgaaacagaa aatggcgatg tttgctggtg
    15781 gtgccagcgg cgtgctgtgt ctgattggcg gcgtgctgtt gctgaagcgt cgtctgttca
    15841 gcccacgtgt gcgtgcaacc actaccggag cggatatcct gatcctgtcg ctgctcgtta
    15901 tccagtgcgc gctgggcctg ttgaccattc cgttctccgc tcagcatatg gacggtagcg
    15961 agatgatgaa actggttggc tgggcgcagt cggtggtgac cttccacggt ggcgcttctc
    16021 aacacctcga tggtgtggcg tttatcttcc gtctgcacct ggtgctgggg atgacgttat
    16081 tcctgctgtt cccgttctcg cgtctggtac acatctggag cgtaccggtg gagtatctga
    16141 cacgtaagta ccagctggtg cgcgctcgtc actaaacgaa ttttagttca catagaccct
    16201 gcttcggcgg ggttttttat gggcacggtg cggggtgagt tgtcggatgc gcttcgctta
    16261 tccgacctac aggggaggat attgtaggcc cggtaaacgt ggtgccatcg ggcaaaatta
    16321 gctcggagta acaggttttg attattcaag gaag
//
LOCUS       DAJVUP010000094        15800 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.094, whole genome shotgun sequence.
ACCESSION   DAJVUP010000094 DAJVUP010000000
VERSION     DAJVUP010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15800
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.094"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..186
                     /locus_tag="OQQ75_002669"
     CDS             <1..186
                     /locus_tag="OQQ75_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS1976941.1"
                     /translation="WRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDDARYQA
                     KYVSVIWQKLIPNQADF"
     gene            251..499
                     /locus_tag="OQQ75_002670"
     CDS             251..499
                     /locus_tag="OQQ75_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase"
                     /protein_id="HCS1976942.1"
                     /translation="MARLILLTEWAKEEFSEPVPTPSTLSKYAKAGMIFPLPKKVGRR
                     WRVDPQARFVGMVNKPEVIATDHPALKRILEDGAPAKI"
     gene            477..1607
                     /locus_tag="OQQ75_002671"
     CDS             477..1607
                     /locus_tag="OQQ75_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HCS1976943.1"
                     /translation="MARPRKYKTNVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSID
                     QKLAETIAAEANSRLARQQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENG
                     EIKLNTLKQKAAPLRVFDERFGTRPLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLI
                     DVFREAQQTGDVPPGFNPAESAKKPQVRISRQRLTFDEWMMIYNAAEKDGYFLQRGML
                     LALMTGQRLSDICKMQFSDIRDGYLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSC
                     RDCVLSPWLLHHHHAKGTAKRGGMVKPATLTVAFKKARDSVDYNWRANGTPPSFHEQR
                     SLSERLFREQGVDTKILLGHSNQKMTDIYNDARGKEWKKLVI"
     gene            complement(1653..2291)
                     /gene="ompW"
                     /locus_tag="OQQ75_002672"
     CDS             complement(1653..2291)
                     /gene="ompW"
                     /locus_tag="OQQ75_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
                     /protein_id="HCS1976944.1"
                     /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG
                     TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP
                     TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG
                     VDYLINRDWLVNMSVWYMDIDTTAKYKSGVTTVKDSVRLDPWVFMFSAGYRF"
     gene            2531..2620
                     /locus_tag="OQQ75_002673"
                     /pseudo
     CDS             2531..2620
                     /locus_tag="OQQ75_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460692.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            2648..3391
                     /locus_tag="OQQ75_002674"
     CDS             2648..3391
                     /locus_tag="OQQ75_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0259 family protein"
                     /protein_id="HCS1976945.1"
                     /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS
                     DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVIL
                     IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL
                     APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI
                     GAVLANTLSNLISAVLLIYLFRLYMLIRQ"
     gene            3421..3960
                     /locus_tag="OQQ75_002675"
     CDS             3421..3960
                     /locus_tag="OQQ75_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HCS1976946.1"
                     /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF
                     RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ
                     RMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI
                     FTLLSGIYIYRHMPQEDKS"
     gene            4065..4463
                     /gene="yciA"
                     /locus_tag="OQQ75_002676"
     CDS             4065..4463
                     /gene="yciA"
                     /locus_tag="OQQ75_002676"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HCS1976947.1"
                     /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI
                     LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE
                     PIGQRYKATEALFKYVAVDPEGKPRALPVE"
     gene            complement(4503..5231)
                     /gene="tonB"
                     /locus_tag="OQQ75_002677"
     CDS             complement(4503..5231)
                     /gene="tonB"
                     /locus_tag="OQQ75_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707161.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein TonB"
                     /protein_id="HCS1976948.1"
                     /translation="MTSMTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAP
                     AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK
                     PKPVKKVQEQPKRDVKPVESRPASPFENTALARLTSSTATAATSKPVTSVASGPRALS
                     RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY
                     EPGKPGSGIVVNILFKINGTTEIQ"
     gene            5446..5742
                     /locus_tag="OQQ75_002678"
     CDS             5446..5742
                     /locus_tag="OQQ75_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415767.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HCS1976949.1"
                     /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP
                     AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF"
     gene            6042..7295
                     /gene="kch"
                     /locus_tag="OQQ75_002679"
     CDS             6042..7295
                     /gene="kch"
                     /locus_tag="OQQ75_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated potassium channel protein"
                     /protein_id="HCS1976950.1"
                     /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN
                     LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY
                     TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY
                     LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT
                     SIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP
                     EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCLAILALSDNDADNAFVVLSAKD
                     MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL
                     NSGHGIFSDNDEQETKADSKESAQK"
     gene            complement(7350..7523)
                     /locus_tag="OQQ75_002680"
     CDS             complement(7350..7523)
                     /locus_tag="OQQ75_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciY family protein"
                     /protein_id="HCS1976951.1"
                     /translation="MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILN
                     KQRNSLLFAIYNI"
     gene            7666..9126
                     /gene="cls"
                     /locus_tag="OQQ75_002681"
     CDS             7666..9126
                     /gene="cls"
                     /locus_tag="OQQ75_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HCS1976952.1"
                     /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII
                     YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP
                     LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEIVFYIWQPGGMADQ
                     VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR
                     MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY
                     SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAR
                     EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG
                     VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ
                     DDYISRSRLLDARLWLKRPLWQRVAERLFYFFSPLL"
     gene            9161..9490
                     /locus_tag="OQQ75_002682"
     CDS             9161..9490
                     /locus_tag="OQQ75_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309775.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HCS1976953.1"
                     /translation="MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEE
                     RGGAELFDPVEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKL
                     CHIIWRE"
     gene            complement(9543..10547)
                     /gene="oppF"
                     /locus_tag="OQQ75_002683"
     CDS             complement(9543..10547)
                     /gene="oppF"
                     /locus_tag="OQQ75_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HCS1976954.1"
                     /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVT
                     LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGIKPDEWRAVRSD
                     IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR
                     YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL
                     IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE
                     KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
                     "
     gene            complement(10544..11557)
                     /gene="oppD"
                     /locus_tag="OQQ75_002684"
     CDS             complement(10544..11557)
                     /gene="oppD"
                     /locus_tag="OQQ75_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppD"
                     /protein_id="HCS1976955.1"
                     /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF
                     SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR
                     AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK
                     RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF
                     NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD
                     AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTLGRLCACFKPVE
                     ELL"
     gene            complement(11569..12477)
                     /gene="oppC"
                     /locus_tag="OQQ75_002685"
     CDS             complement(11569..12477)
                     /gene="oppC"
                     /locus_tag="OQQ75_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HCS1976956.1"
                     /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFIHNRAAVASLM
                     VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR
                     ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF
                     GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNV
                     LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA
                     GFLVVTLFCFNFIGDGLRDALDPKDR"
     gene            complement(12492..13412)
                     /gene="oppB"
                     /locus_tag="OQQ75_002686"
     CDS             complement(12492..13412)
                     /gene="oppB"
                     /locus_tag="OQQ75_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HCS1976957.1"
                     /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE
                     VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA
                     AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHW
                     LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR
                     IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGALTILFNAIVDVLYAVIDPKIRY"
     gene            complement(13498..15129)
                     /gene="oppA"
                     /locus_tag="OQQ75_002687"
     CDS             complement(13498..15129)
                     /gene="oppA"
                     /locus_tag="OQQ75_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HCS1976958.1"
                     /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN
                     NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHL
                     RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDL
                     GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT
                     LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPI
                     ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA
                     QGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYN
                     TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT
                     SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV
                     YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH"
     gene            15413..15709
                     /locus_tag="OQQ75_002688"
     CDS             15413..15709
                     /locus_tag="OQQ75_002688"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1976959.1"
                     /translation="MRFLLANTFCKIVKQFSFIDRIRIYSLHPCLNKHLSIQSNRDWL
                     SMSIFSDYSFSIEMHNNLTIDYYLALSSTKGSGITNIISIILQQAQDYDVAKIT"
BASE COUNT         4067 a         3834 c         3713 g         4186 t
ORIGIN      
        1 tggcgttact acaacgatcg cgatgtacgc acaatcgttg agctggggaa agccatagac
       61 ttcgatgcca gaacggctat tccattcgaa ggtgagcgcc ataatgcact tgatgacgcc
      121 cgttaccagg caaaatacgt ttcagttatc tggcaaaaac tgatcccgaa tcaggctgat
      181 ttttaatgtt caaccccggt cgttgcccac cagctatagt ggcggcgacc atgattagcg
      241 aacgacgctc atggcaagac ttattctgct cactgagtgg gcaaaagagg aattcagtga
      301 accggtccca actccgagta cgttaagtaa atacgctaaa gccggaatga tatttcctct
      361 ccccaaaaaa gttggaagac gctggcgagt ggatccgcaa gctcgctttg tcggaatggt
      421 aaacaagccg gaggtgatcg ccacagatca ccctgctttg aagaggatac tggaagatgg
      481 cgcgcccgcg aaaatataaa accaatgttc cgggattatc tccgtatttt gacaaaagaa
      541 ataacaaagt ttactggcgt tacaggcatc ccataacagg caaaaatcac ggtctcggca
      601 gtattgacca gaaactggca gaaactattg cagcagaagc gaacagccgt cttgcccggc
      661 agcaaatgga acaaatgctc agtctgcagg agaaaattat tagtgatacc ggcggttcat
      721 caaccgttac catttttctg aataattaca gaaaaattca acaggaaaga tatgaaaacg
      781 gcgagatcaa actcaacacg ctgaaacaga aagcggcccc tctcagggta tttgatgaac
      841 gttttggcac cagaccgtta gatgccataa ccgtaaaaga tgtggtatca gtactggaag
      901 agtacaaggc cagaggacat aacagaatgg gacaaatttt caggaaggta ctgatcgatg
      961 ttttccggga agctcagcaa acgggcgatg tcccgccagg ctttaaccct gcagaatcgg
     1021 caaaaaaacc gcaggtgcgg atatcaagac agcgactgac ttttgatgag tggatgatga
     1081 tttataacgc agcggaaaag gatggttact ttttacagcg cggtatgctg ctggcactga
     1141 tgacaggcca gcgcctttca gatatttgca aaatgcaatt ttcggatatc cgggatggtt
     1201 atcttcatgt cgaacagcaa aaaacaggaa cccggattgc catccctctg gctctgcgtt
     1261 gcgataaatt aaatctcacc ctagatgatg tggtgtcatc ctgccgcgat tgcgttctta
     1321 gtccgtggct attgcaccac catcacgcga aagggacagc taagcgcggc gggatggtta
     1381 agccagcaac attaaccgtt gcatttaaaa aagcccggga ttctgtggat tacaactggc
     1441 gtgctaatgg caccccaccc tctttccatg agcagagatc tttatcagag cgattgttca
     1501 gagagcaggg ggttgatacc aaaattttgc tgggccattc gaatcaaaaa atgaccgata
     1561 tttacaacga cgcacgcggt aaggaatgga aaaaactggt catttgatga ccagttttgc
     1621 agaggggttt tgcagaggtt ttgcagagaa aattaaaaac gatatcctgc ggagaacata
     1681 aacacccacg gatccagtcg taccgagtct tttacggtag taacaccaga tttgtactta
     1741 gccgtggtat cgatatccat gtaccacact gacatgttaa ccaaccagtc acggttaatc
     1801 agataatcaa cccccacctg cccggcagct ccccaggaat ctttcagact gagatcggaa
     1861 agccctgcct ctttgccatg atcgttaaat ccattatcaa agaaggtggt gtagttaata
     1921 cctgccccaa cgtaaggacg gaatttgctg ctggcatcac caaaatacca ctgcgccatc
     1981 agtgttggcg gcagatggtg aacggttgca atatcgccgg tcgcccgggt gccgatttta
     2041 tggcggaacg gcgtcgctgc cagtaattcc acaccaatgt tgtcggtcgc catataagta
     2101 aacgtcaagc ccagttgagt gttattggtc acgctgaatc cacccagact tcctaacgta
     2161 ccaccagcac cttctgttgg acgtacggtt gcagaacctg cacgcataaa aaattcgcct
     2221 gcttcatgcg caaaggcact gccagagaga agagttgtta ctgccaaagc cgccactgtt
     2281 aactttttca tatccgctcc gtcgttatgg ttataaaaac gtgacgaata tacctacatt
     2341 ggagtaacaa atgatcctac atagatcaca ttacatatga taattcaccc tttattgatc
     2401 tggattaatt tagaagttgc attgagaatc ctggttaacg tgatttaaat caatttttaa
     2461 atattttcgc tacgcaaata ttaactcgat cgccacttgc cgcggtttgc ccacgcctga
     2521 aggccagcaa ttacctccgc tttacaaaga tatgcttttc catacaagac ctgatgctgc
     2581 cacccgaggc ttaaccaggg tacaattgcc cgctaattaa cacctgcata aaactcaagg
     2641 agagtgcatg tctatcacgg cgcagtccgt ataccgtgac accggaaatt tcttccgtaa
     2701 tcaatttatg accattctgt tggtatcgtt gctatgtgcg tttatcacag tggtgttagg
     2761 gcatgttttc tcacccagtg atgcacagct tgcgcagctc aatgacggcg tgcccgttag
     2821 cggcagtagt gggttgttcg acctggttca gaatatgtca ccggaacagc aacaaatttt
     2881 gctgcaggct tcagcggcgt ccactttttc aggattaatc ggtaacgcca ttctcgccgg
     2941 aggcgtaata ttaattatcc agctggtgtc tgcgggtcag agagtcagtg cgctgcgagc
     3001 tattggtgcc agtgcaccga tattgccaaa gttatttatt ctgatttttc tgactaccct
     3061 tttagtacag attggcatca tgctagtggt cgttccggga attatcatgg ccattttact
     3121 ggccctggca ccggtgatgc tggtacagga caaaatgggc atttttgcct cgatgcgtag
     3181 cagtatgcgg ctgacttggg cgaatatgcg tctggtggca cccgcagtac tgagctggtt
     3241 gctggcaaaa acactgttgc tgctttttgc ctcttctttt gccgcattaa ccccggaaat
     3301 tggtgccgta ctggcgaaca ccttgagcaa cctgatttca gccgtattgc tcatctatct
     3361 gttccgtctg tatatgttga ttcgccaata accttaagca tttgattacg gaatcgtaaa
     3421 atgaagcagt ttcttgattt tttaccgctg gttgtctttt tcgcgtttta caagatttat
     3481 gacatctatg cggctactgc ggcgctgatc gtcgccacgg cgattgtgct tatctatagc
     3541 tgggttcgct ttcgtaaggt tgagaagatg gccctgatca cttttgttct ggtggtcgtc
     3601 ttcggtggct tgacgctgtt cttccacaat gatgagttta ttaaatggaa ggttacagtc
     3661 atttatgctc tgtttgcggg agccctgtta gtcagccaat gggtgatgaa aaagccgcta
     3721 attcagcgga tgctgggtaa agaactcacg ctgccgcaac cggtatggtc gaagctgaat
     3781 ctggcctggg ctgttttctt tatcctttgc ggtctggcaa acatctacat cgcattctgg
     3841 ctgccgcaaa atatttgggt caactttaaa gtctttggac tgaccgccct taccttaatc
     3901 ttcacattgt taagcggtat ctatatctac cgccacatgc cgcaggaaga taaatcctaa
     3961 ccagactgcc agtccttcgg ggctggcgct gtatctcctc tgttctcctc aggaaaatca
     4021 tagtagcatc gcgcctgtga ttttcctttt aagtcggttt taccatgtct acaacacata
     4081 acgtccctca gggcgatctt gttttacgta ctttagccat gcccgccgat accaatgcca
     4141 atggtgacat ctttggtggt tggttaatgt cacaaatgga tattggcggc gctattctgg
     4201 cgaaagaaat tgcccacggt cgcgtagtga ccgtgcgggt tgaaggaatg actttcttac
     4261 ggccggttgc ggtcggcgat gtggtgtgct gctatgcacg ctgtgtccag aaagggacga
     4321 catcggtcag cattaatatt gaagtgtggg tgaaaaaagt agcgtctgaa ccaatcgggc
     4381 aacgctataa agcgacagaa gcattattta agtatgtcgc ggttgatcct gaaggaaaac
     4441 ctcgcgcctt acctgttgag taatagtcaa aagcctccgg tcggaggctt ttgactttct
     4501 gcttactgaa tttcggtggt gccgttaatt ttaaacagga tattcaccac aatcccactg
     4561 cctggcttac ccggctcata acgccatctg cgcatcgcat ttttcacctc acgctcaaac
     4621 atgttcgcag gcttggctga gaggatttgt acgttatcca cgcgaccatc cggcgtgacg
     4681 tcaaatttaa ctttaacctg cccttcaatg cgcaatgcct gtgctcgtgc cggatactgc
     4741 ggctgattac ggcttaatgc gcgtggtcct gaagccacac tggtaaccgg cttgctggtt
     4801 gcagccgttg ctgtacttga tgtcaggcgt gccagtgccg tattttcaaa cggtgatgcc
     4861 ggacgcgact ctacgggttt gacatcgcgt tttggctgct cctgtacctt tttcaccggc
     4921 ttcggttttg gcttaggttt cggcttcggc ttttcaatga ccaccggtgc ttcttttggc
     4981 ggttcgggga tcggctcagg ttccggttct ggctctacca ccggctccgg tggcggctga
     5041 acggcttgtg gcggttcgag atcagcaggc gcaaccatcg tgacagaaat tggctgcgca
     5101 ggcgcaggta gttcaataac ctgatgtacc gaggtataga gcagacccgc cacaacagca
     5161 ccatgaatgc agaccgaaag taacgtcggc caggggaagc ggcgaggtaa atcaagggtc
     5221 attgaagtca taatcatttc agtagaaaaa ccaagcctcg attttaaatg caaatagcaa
     5281 tcatattcaa taaggcaaga cgatcaggat cagtgaaaat gtcatttttg ccgtaattaa
     5341 ccttacttta tgcatggtct taacaaagac atcatctttc cgttgcagat cttcgccctt
     5401 tcaaataacg tactttacaa ctttcccgaa caaggagttg tgcccgtgtt gtatgttatt
     5461 tacgctcaag acaaagctga tagcctcgaa aaacgccttt ccgttcgtcc ggcacattta
     5521 gcacgtttac agttactgca tgatgaaggt cgtttgttga cagctggtcc aatgccagcg
     5581 gtagacagta acgatccagg ggctgcggga tttactggct caaccgttat tgctgaattt
     5641 gaatcgctgg aagcagctca ggcctgggcc gatgctgacc cgtacgtagc ggcaggagtc
     5701 tatgaacacg tttcagtgaa accatttaag aaagtgttct gaatagagat tcaatattta
     5761 agggcacggt ttttgcaacc gtgttcttgt ttggcctttc cttatagccg gtcagtgcat
     5821 tcaccaccac aagcagataa taactttatc tgtatttctt tatatgatgt gagcatattc
     5881 aggaaaaatg acctttcctg aggtacagtt gctcgctcaa aacctttgat tactgcggat
     5941 aaagtcatct actattgttt aacacattca cgcgctgcat gtatgttcag aaaatgtgca
     6001 cgctaagata attaaacaaa attgtggtta cagaggtatc agtgagtcac tgggctacat
     6061 tcaaacaaac agcaacaaat ttatgggtga ccctacggca cgacattctc gcgctggccg
     6121 tctttttaaa tggattgctt atttttaaaa caatctatgg tatgtcggtc aatttgctag
     6181 atattttcca tatcaaagca ttttcagagt tggatctctc cttgctggca aacgccccac
     6241 tatttatgct cggcgtcttt cttgtcctga actccattgg cttactgttc cgggcaaagc
     6301 tcgcatgggc aatcagtatc attttgttgt tgatagcgct aatttatacc ctgcattttt
     6361 atccctggtt gaaatttagt attggatttt gcatttttac gctggtgttt ttgctgatac
     6421 tgcgcaaaga cttctcccac agtagcgccg cagccgggac aatttttgca tttattagtt
     6481 tcacgacatt actgttttac tcaacctacg gtgcgcttta tttaagcgaa ggttttaatc
     6541 cgcgaataga aagtttgatg accgcgttct atttttcgat agaaaccatg tcaaccgtcg
     6601 gctatggcga tattgtccct gtttctgaat cagcacgatt gttcactatt tcggtcatta
     6661 tttccggtat taccgttttt gccacatcta tgacctcaat ttttggtccg cttatccgcg
     6721 ggggattcaa caaacttgta aaaggaaaca atcatacaat gcatcgtaaa gatcatttta
     6781 ttgtttgcgg acattcgatt ctcgccatca atacgattct gcaactgaat caacgcggac
     6841 aaaacgtaac ggttatcagc aacttgcctg aagatgatat caagcaactt gagcaacgct
     6901 taggcgataa cgctgatgtt atccccggtg acagtaatga cagttcagta ttaaagaaag
     6961 cgggaatcga tcgttgcctg gccattctgg cgctgagtga taacgatgca gataacgcgt
     7021 ttgttgtact ctcggcaaaa gatatgagca gtgatgtcaa aacagttctc gccgtcagtg
     7081 atagcaaaaa cctgaataag attaagatgg tacatccgga tatcattctc tcaccgcaac
     7141 tgtttggcag cgaaattctg gcgcgagttt taaatggtga agagattaat aatgatatgc
     7201 tcgtttcaat gttgttgaac tccggtcatg gcattttcag cgataacgat gaacaagaaa
     7261 cgaaagctga cagtaaagaa tcggcgcaaa aatagagttt aaagatggag gagtaaactt
     7321 attgggcacc gcaatggtgc ccagtacatt tagatattgt agatcgcaaa caataacgag
     7381 ttacgctgtt tgtttagaat gcacttcctg atgctgtgga tacgcatatt tcggcgcgat
     7441 tgcccctcaa gccaacgcga tttacgtcgg ctagcctgac gctgcatgcg ccagcgcccc
     7501 acttccgttc tactccgctt catgttaact actctatgca ataacagaat ggtcattata
     7561 cccccgcccc cgacgctgac cagtgctttt cccgcgtttt tatttgccag atgaatccat
     7621 atgcgtaaac tcataacaat gcgctttcaa aaggatttct aatctatgac aaccgtttat
     7681 acgttggtga gttggttggc cattctggga tactggttgc tcattgcagg cgtaacttta
     7741 cgcattctaa tgaaacgacg cgcagttccc tccgcgatgg cctggctgtt gattatttac
     7801 attctgccgt tagtcggaat tattgcctat cttgccgttg gcgagctcca tttaggcaaa
     7861 cgccgcgctg agcgcgccag agcgatgtgg ccttccaccg caaaatggct taacgacctt
     7921 aaagcctgta agcatatctt cgccgaagaa aatagcagtg tcgctgcgcc attattcaag
     7981 ctttgcgagc gtcgtcaggg gatcgctggg gtcaaaggga atcagctaca actgatgacc
     8041 gagtcagatg atgtgatgca ggcgttaatc cgcgacatcc agctcgcgcg ccataatatt
     8101 gagattgtgt tttatatctg gcagcccggc ggcatggcgg accaggtggc tgaatcatta
     8161 atggccgctg cgcgacgcgg cattcattgc cgattgatgc tcgactccgc cgggagtgtg
     8221 gcttttttcc gcagcccgtg gcccgagcta atgcgtaatg ccggtattga agtggtcgaa
     8281 gccttaaagg tcaatctgat gcgtgtgttt ttacgccgta tggacctgcg ccaacatcgc
     8341 aagatgatca tgatcgataa ttacatcgcg tacaccggca gcatgaatat ggtcgatcct
     8401 cgctacttca aacaagatgc gggcgtaggg caatggattg atctgatggc gcgtatggaa
     8461 ggccccatcg ccaccgcgat ggggattatt tattcctgcg actgggagat tgaaaccgga
     8521 aaacgtattc tgccgccacc accagatgtc aatattatgc cgtttgaaca ggccagcggt
     8581 cacaccattc acacaattgc ttctggcccc ggctttccgg aagatctcat tcaccaggca
     8641 ttattgactg cggcttattc ggcgcgtgaa tatttgatca tgaccacgcc ctactttgtg
     8701 ccaagcgatg atttacttca tgcgatttgc acggcggcac agcgcggggt ggatgtcagt
     8761 attatccttc cgcgaaaaaa tgactcgatg ctggtcggct gggccagtcg cgcattcttt
     8821 acggaacttc ttgctgctgg ggttaaaatt tatcagtttg aaggcgggtt actgcatacc
     8881 aagagcgtgc tggtcgatgg cgaactaagt ctggttggca ccgttaacct tgatatgcgt
     8941 agtctgtggc tgaatttcga gattaccctg gcaatcgacg ataaaggttt tggtgcagac
     9001 cttgccgccg ttcaggacga ttatatttcg cgttcacgtc tgctcgatgc ccgtttatgg
     9061 ctaaaacgtc cattatggca acgtgtcgcc gagcgactgt tttacttctt cagcccgttg
     9121 ctgtaaaacg tctccaacag aggttaaaca ggtagtgact atggatatgg atctaaacaa
     9181 tcgcctgact gaagatgaaa cgcttgagca ggcctacgat atttttctcg aactggctgc
     9241 cgacaatctc gacccagctg atgttctgct gttcaatctt cagtttgaag agcgcggcgg
     9301 cgcggagtta ttcgatccgg tggaagactg gcaggaacat gttgatttcg atttgaaccc
     9361 ggactttttt gccgaagtgg tgattggtct ggcggacagt gaggatggtg aaatcaacga
     9421 tgttttcgcc cgcattctgt tatgccgcga aaaagatcac aaactttgcc atatcatctg
     9481 gcgggaataa ataatcgctt tcggcgtgaa aaagggctga caactgtcag cccttattgt
     9541 gtttaaagcg gatcgacttt caggcaagaa acggcgtgtc tgaaactccc ttccagcaca
     9601 ggacgtgttt tggcgcactc cggaccggca atcgggcaac gggtacggaa aacacaaccg
     9661 gaaggcgggt tgatcggcga cggtaattcc ccttccagta actggatggt tttgttcttc
     9721 tccagatccg gatcaggtat ggggactgcc gacatcaatg ccctggtgta aggatgtagt
     9781 ggattgtggt agacctcatc ataggtcccc agttctaccg catggccgag atacatcacc
     9841 aacacacgat cggaaatgtg ttttaccacg gccaggtcat gagcaataaa aattaatgac
     9901 aatcccatct cacgttgcag ctgctggagc aggttgacca cctgcgcctg aattgacacg
     9961 tccagcgccg acaccggctc atcacagata atcagcttcg gttcaagaat aagagcacga
    10021 gcaatcccga tacgctggca ctgcccaccg gagaactcat gcggatagcg gttaatcagg
    10081 ttaggcaata acccgacttt cagcatcatc gccttcacgc gctcgcgaac ttcctgacgt
    10141 gacattttcg gatgataagt acgcagtggt tcagcgatga tctcgccgat ggtcatgcgc
    10201 gggtttagcg atgccaacgg atcctggaaa atcatctgaa tatcactgcg aacggcacgc
    10261 cattcatcgg gcttaatgcc cagcaactct ttacctaacc aggcaacatg accgtcggtc
    10321 gctttaacca ggccaatgat ggcgcgagca aaggtggact taccgcatcc cgattcccct
    10381 accacaccta atgtttcccc ttcatacagg cgaagcgtga caccatcgac ggctttgagc
    10441 gttttcggcg gttgccagaa ccactgtttg ccatctttga tttcaaagtg cactttcaga
    10501 tcggcgattt caaggaggac ttttcttcct tcggttacag cattcataac agttcctcca
    10561 ccggtttaaa gcaagcacac agacggccaa gcgtaaactc ttccagcggc ggtgcgctac
    10621 tacaaatttc catcgcatgc ggacaacgtg gctggaacgg gcaacctttc ggtaatcgca
    10681 gcaggtttgg cggattaccc gggatggtca acattgtttc accttccgca tcgagacgcg
    10741 gcaccgcgtt gagcaaaccg atagaataag gatgaacggg ttgataaaag acatcgcgcg
    10801 cgttgccata ttccatcgtg cgcccggcgt acattaccag cactttgtca cagatccccg
    10861 ccaccacgcc aagatcgtgg gtaatcataa tgatggcggt attaaattcc cgtttcagtt
    10921 catttaatag cgtcatgatc tgcgcctgta cggtgacgtc cagcgctgta gtgggttcat
    10981 ccgcaatcag cagcttaggt cgacatagca atgccatcgc aatcataact cgctgacgca
    11041 tgccgccaga aaactcgtgc gggtacattt tcatgcgttt acgtgcttcc ggcattttta
    11101 ccgcatcgag catccgcacc gactcttcaa acgcctcagc tttgctcatg ttcttatgca
    11161 gcatcagcac ttccatcaac tgctcaccga cgcgcatata gggattcaac gaagtcattg
    11221 ggtcctgaaa aatcattgag atttgttcag cgcgcagttt attgagttca tgctctggca
    11281 aattgaggat ttcacgccca ttgaaggttg ccgatccgcc aatacgtccg ttggcagcca
    11341 acaggcccat caacgcaaat gcagtttgcg atttacccga accagactca cctacaatac
    11401 ccagcgtttc tccggcacgt agggaaaaat tcaaatcatt gaccgccgtg acgtcgccgt
    11461 ccggggtact aaaggtgaca cgcaaatctt tcacgttcag cagtgcgtca gcctgttgtt
    11521 gtgcgagcgg cacagttgca gtttcaatta cgctcatggc tgcactcctt aacgatcttt
    11581 cgggtcgagg gcatcacgca agccatcgcc gataaagttg aaacaaaaca gcgtcaccac
    11641 gaggaatccc gctgggaaca acaataacca tggagagact tccatcgagt tcgcgccatc
    11701 actcagcaat gcaccccagc tgcttaacgg ctcttgcgta cccaacccca ggaagctaag
    11761 gaaagattca aagaggatca tgctgggcac cagaagtgat gcgtagacca ccaccacacc
    11821 gagtacattc ggcacaatgt ggcgaataac aatgcccgat gtcgatacac cgccaacttg
    11881 tgccgcctca ataaactctt tgcgcttcag actcagggtt tgcccacgca caatacgagc
    11941 catatccagc caggaaacca tgcctatcgc cacgaaaatc agcaggatgt tttgaccgaa
    12001 aaaggtcacc agcaaaatga cgaagaacat gaatgggaag gagttgagga tttccagcag
    12061 acgcatcatt accgaatcca ctttaccgcc cagataaccg gaaagcgaac cataaagtgt
    12121 cccgacgacc acagccacca gtgccgcagc aacaccgacc atgagtgaga tacgcccacc
    12181 aatcgcaacg cgcacaagca ggtcgcgacc ggatgagtca gtaccaaagt agtgaccgga
    12241 ctccatatcc ggggcgctgg acatcatcgc ccagtcagta tcgtcatagg caaactggga
    12301 aagcatcggt gccaggatta caaataacgc gatcagcacc agcaccatca gactggcaac
    12361 cgccgcacgg ttatgaataa aacgtcgacg tgcgtcctgc cacaagctgc gcccttcgac
    12421 ctccagcttt tcactgaaat tttccagcgt ctcgctgttt ttcttactta acatcatcgc
    12481 gagctccagt atcagtaacg gattttcggg tcgataaccg catatagcac atcgacaatg
    12541 gcattaaaca aaatggttaa agcaccaacc aggatggtca ggcttaacac taaggaatag
    12601 tcacggttca atgcgccatt aacgaacagt tgtccaatcc ccggcaaacc ataaatggtt
    12661 tcgataacca tagaaccggt aataatgccg acaaatgcgg ggcccatata agagagcacg
    12721 ggtaacagag caggttttaa tgcgtgacgt aaaatgatcc gccgcatagg taaccctttc
    12781 gcccgggcag tacgaataaa attggagtgt aatacttcaa tcatagagcc acgggtaata
    12841 cgcgcaatac tggcgatata agcgagtgac aacgccacca tcggcaatat catgaattta
    12901 agcgccccac cattccagcc accgcccggc agccaatgca aaatgatcgc aaatatcatg
    12961 actaataatg gtgcaaccac aaaactgggg ataacaaccc cggtcattgc cagccccatc
    13021 acggtatagt cccatttggt gttttgtttt aatgcggcaa taacgccagc actaacaccc
    13081 agtattaccg caaggaaaaa tgctgcggct cccagtttgg cagaaacggg aaaactggat
    13141 gcaaccaagt cattgaccga ataatcttta tatttaaacg atggaccgaa atcaccgtgc
    13201 gccagttgtt tcaggtagct gaaatactgt gtcatgatcg gatcattaag atgatatttc
    13261 gcttcgatat tggccatcac ttctggcggt aaagtacgtt cgccggtaaa agggcttccc
    13321 ggcgcgaggc gcatcataaa gaacgaaata gtaataagaa taaatagcgt cggaatcgct
    13381 tccagacagc gacgtagaat aaattttaac attgccctac cttctggcct gtgccttctg
    13441 taatgcgata aaaatcagac accgtggagc aggacactcc tgccccacgt attgccatta
    13501 gtgcttcaca atgtacatat tccgggtata ggtattatcc agcggatctt tgccggtata
    13561 gccaccaacc cacggtttca ccagacgcgc attcacgtag taataaacag gaacaatggc
    13621 cgaatcctta tccagctgtt gttctgcttt agtgtacaga gctgtgcgct gcgcctcgtc
    13681 agtcactttc agcgtttccg ccataatgct gtcaaaggcc gggctcttat aatgcgcggt
    13741 attcatcgag ctgttcgaaa gcatggtgtt caggaaggaa gttggttcgt tgtagtcagc
    13801 acaccagcct gcacgggcca catcaaaagt accctggtga cgggtgtcga ggaacgtttt
    13861 ccactcctgg ttaaccagtt tgacgtttac accaatgttt ttcttccaca atgaagaggc
    13921 agcaatcgcc agctttttat gcagatcgga ggtgttatac aacaggttga ttgtcaacgg
    13981 tttgtctgcg gtataacccg cttcagccag cagttttttc gcttcttcgt tacgtttttc
    14041 ctggctccag ccaaaccatt ccggctgagt caattttgcg ccatcagtat acggtggagt
    14101 gtaaccatag gcgggcatgt cgccctgcgc tttcacttta ttaacaatga tatcgcggtc
    14161 catacctagt ttcagtgcgg tacgcacacg cacatcgttg aatggcggtt tctggttgtt
    14221 aatttcgtaa tagtaagtgc acaggtatgg atcaacgtga acttcgtccg ggatctcttt
    14281 tttcagcttc tggaacaatt cgatcggcat gttgttataa gtcatgtcga tttcaccact
    14341 acggtagcgg ttgacatcgg taacttcaga agcaataggc aaataggtta cctggttaat
    14401 aacggttttc gcgttgttcc agtaggtcgg gctgcgttca agaacgattc gttcgtttac
    14461 gacccaatct tttaaggtat aggcaccgtt ggtgacgata ttaccaggct gggtccattt
    14521 ttcgccgaat ttctcgatag cggcttttgg caccggtgaa gttgatgggt gaacaagtaa
    14581 tttatagaag tacggaacgg gttcacttaa ggtgacttct aatgtgtgat catcaatagc
    14641 tttcacaccg agatcggtaa tcggtttttt cccttcaaga atttcatcaa taccggcgat
    14701 atgcccatat tgcagataac tggcatacgg agaagcagtg ttcggatcaa cagaacgttg
    14761 ccagctatac acaaagtctt gtgctgtgac tggcgtacca tcagaccatt tcgcatcttt
    14821 acgcaaatgg aaggtccaga ctttcgcgtc tttattatcc caggattcag cgacgccagg
    14881 tgccggatga ccgtcaagat cgctgaccag taagccttca aacaggtctc ggctgatatt
    14941 agactccgga acaccttcaa ttttgtgcgg atctaatgac tgaacttctg aaccattgtt
    15001 acgtaccagc gtttgttttt ccgccagtgt gacgcctgcg ggtacatcag ctgccagcgc
    15061 gacattccct gccattagcg cagccagaac gccagctgct actaaacttc tcttggtgat
    15121 gttggtcatt gttttttgga ctccctcatt ataattactg gtattaacca gcatgtgtaa
    15181 tcccggattg ggaccctgca caggctcgga gactttctgc tgtcaggtta ctttatcgtt
    15241 acggattgct atcaccgact ttatttattc tggtgattca gacgatcacc ttatgtcgat
    15301 tcgtactgtg tctcccctgt cgagacacat tattctttcg cgacgctctt taattgttaa
    15361 ttattctcat taccaataaa gaatcgtctg gcggttgccc ggaaagtact aaatgcggtt
    15421 cttactcgcc aatacatttt gcaaaattgt taagcaattc tcttttattg accgtatcag
    15481 aatctatagc ttgcatccat gccttaacaa acatctttca attcaatcaa atagagattg
    15541 gctaagcatg tctatctttt ctgattacag tttcagtatt gaaatgcaca ataatttaac
    15601 aattgattat tatttagcac tttcctctac caaaggcagt ggaattacta atatcatttc
    15661 aattattctt cagcaagccc aggattatga tgtggcgaaa ataacatgat ggtgaggaga
    15721 agcagttaag aaaatcctta taactaactg taatttgaga agaatatttt tacctattcc
    15781 ttttgctttt gataactgcg
//
LOCUS       DAJVUP010000095        15667 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.095, whole genome shotgun sequence.
ACCESSION   DAJVUP010000095 DAJVUP010000000
VERSION     DAJVUP010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15667
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.095"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1155
                     /locus_tag="OQQ75_002689"
     CDS             <1..1155
                     /locus_tag="OQQ75_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISKra4-like element ISKpn19 family transposase"
                     /protein_id="HCS1976960.1"
                     /translation="QKIRYRTLFGVIPVSGLRVYRCRCEESDTKTVSLLSDWAGDYSH
                     PALKYIETRWASMISYEMTTRLLKDILPVGHSLNASTVRNHLCQVAQRLDAEAEAHSG
                     FLSGCPRDWGNLPRPGKPLVVGIDGGYVRDRDDKKRNFEIIAGKSFSVGAPADTRRFG
                     FVQKDDCHPERRLMTHLSAQGMQANQQIFFLSDGADNLRDLQFGMYPESTHVLDWFHI
                     TMRLKVLMQYARGLLVSDPEAGSKVLALLESIKRYLWHGNVVAALEHIDNCVMYCDDP
                     ELSYPSLKSLQKHLDEMYTYIRNNKMMIPNYGEMRRYGEPVSTAFVESTINEVIARRM
                     AKKQQMQWSRKGAHYLLQTRTAVLNNELQDKFVCWYPGFQSDGKGPAMAA"
     gene            1200..1616
                     /locus_tag="OQQ75_002690"
     CDS             1200..1616
                     /locus_tag="OQQ75_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001498886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1976961.1"
                     /translation="MDRLGRDLRHLINTVHDLTARGTGLKVLTGHGATIDTTTAAGKL
                     VFGIFAALAEFERELIAERTTAGLASARARGRNGGRPYKMTPVKLRLAMASMGQSETK
                     VSTLCQELGITRQTLYRHISPVGQLRADGIKLLNRG"
     gene            complement(1935..2591)
                     /locus_tag="OQQ75_002691"
     CDS             complement(1935..2591)
                     /locus_tag="OQQ75_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HCS1976962.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
     gene            2986..4001
                     /locus_tag="OQQ75_002692"
                     /pseudo
     CDS             2986..4001
                     /locus_tag="OQQ75_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(4044..7049)
                     /locus_tag="OQQ75_002693"
     CDS             complement(4044..7049)
                     /locus_tag="OQQ75_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /protein_id="HCS1976963.1"
                     /translation="MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSR
                     GDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTR
                     REHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
                     GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGP
                     VTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQK
                     RMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALA
                     SACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRV
                     RRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
                     KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRS
                     LGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPD
                     SLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA
                     EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGG
                     GEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDS
                     IFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDH
                     DADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLT
                     QAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYT
                     DGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINML
                     GHYSFTLAELVTKGHLRPLKEASEAENVA"
     gene            7213..7770
                     /locus_tag="OQQ75_002694"
     CDS             7213..7770
                     /locus_tag="OQQ75_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1976964.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGD
                     MGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTG
                     ATEIAHQLSIARSTVYKILEDERAS"
     gene            7953..8813
                     /locus_tag="OQQ75_002695"
     CDS             7953..8813
                     /locus_tag="OQQ75_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HCS1976965.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
     gene            9023..9427
                     /locus_tag="OQQ75_002696"
                     /pseudo
     CDS             9023..9427
                     /locus_tag="OQQ75_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
     gene            complement(9534..10370)
                     /locus_tag="OQQ75_002697"
     CDS             complement(9534..10370)
                     /locus_tag="OQQ75_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HCS1976966.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(10370..11173)
                     /locus_tag="OQQ75_002698"
                     /note="aph(3'')-Ib"
     CDS             complement(10370..11173)
                     /locus_tag="OQQ75_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HCS1976967.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            complement(11234..12049)
                     /gene="sul2"
                     /locus_tag="OQQ75_002699"
     CDS             complement(11234..12049)
                     /gene="sul2"
                     /locus_tag="OQQ75_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HCS1976968.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            12379..12555
                     /locus_tag="OQQ75_002700"
     CDS             12379..12555
                     /locus_tag="OQQ75_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HCS1976969.1"
                     /translation="MLTDTKLRNLKPRDKLYKVNDREGLYVGVASENGIYGHSRFCNT
                     DFDDKLACLNLSGV"
     gene            complement(12737..13741)
                     /locus_tag="OQQ75_002701"
     CDS             complement(12737..13741)
                     /locus_tag="OQQ75_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element IS5075 family transposase"
                     /protein_id="HCS1976970.1"
                     /translation="MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLAT
                     CPATTIAMEACGGSHFMARKLEELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEAAS
                     RPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISR
                     LSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCV
                     GTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLL
                     VQCARVFIQKLEHQSGKLADWVRELLCRKSNFVVTCALANKLARIAWALTARQQTYEA
                     "
     gene            complement(13820..15586)
                     /locus_tag="OQQ75_002702"
                     /pseudo
     CDS             complement(13820..15586)
                     /locus_tag="OQQ75_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014834018.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
BASE COUNT         3743 a         4021 c         4231 g         3672 t
ORIGIN      
        1 cagaaaatac ggtaccggac gctgtttggc gttattccgg tatccgggct tcgggtgtac
       61 cggtgccgtt gtgaagagag tgatacaaag acagtcagtt tgctcagcga ctgggccggc
      121 gattattctc acccggcact gaaatatatt gaaacccgct gggcctcgat gatctcctat
      181 gaaatgacga ctcgtctgct gaaagatatt ctgccggtgg gccacagcct gaatgcctca
      241 acggtgagga atcatttatg ccaggtggcg cagcgtcttg acgctgaggc tgaagctcat
      301 tcaggttttc tttccggctg cccccgcgac tgggggaacc tgcccaggcc aggaaaaccg
      361 cttgtggtgg gtatagatgg tggttatgtt cgcgatcggg atgacaaaaa gcgtaatttt
      421 gaaattattg ccgggaagtc tttttccgtt ggtgcgcctg ctgacacccg ccgcttcggt
      481 tttgttcaga aggatgactg tcatccggaa cgcaggctca tgacccacct ttcagcgcag
      541 ggaatgcagg ccaaccagca gatatttttt ctgtccgacg gcgcggataa tctcagggac
      601 ctccagttcg gtatgtaccc tgagtcaacg catgtgctgg actggtttca tatcaccatg
      661 aggctgaagg tgctcatgca atatgcccgg ggactgctgg tatcagatcc agaggcgggg
      721 agtaaagttc tggcactgct ggaaagcatt aaacgatatc tctggcatgg caatgttgtc
      781 gctgcgctgg aacatattga taattgcgtt atgtattgcg atgaccctga actcagctat
      841 cctagcctga aatccctgca aaaacatctg gatgaaatgt atacctacat ccggaataat
      901 aagatgatga tcccaaacta cggcgaaatg cgtcggtacg gagagccggt atcaaccgcg
      961 tttgtggaat ccacgatcaa tgaagtgatc gccagacgaa tggccaaaaa gcagcagatg
     1021 cagtggagca gaaaaggggc tcattatttg ttacagaccc ggaccgccgt tttgaataac
     1081 gaactgcagg ataaatttgt ctgctggtat ccgggttttc aaagtgacgg gaagggacca
     1141 gcgatggcag catagctcac gctgccccaa tattttttat gctctcggtc gtatggaagc
     1201 tggaccgcct cggtcgtgat cttcgtcatc tcattaatac agtgcacgac ctgaccgcga
     1261 gggggaccgg tctgaaagtg ctgaccggtc acggggcgac tatcgacaca acaacggccg
     1321 ctggcaagct tgtcttcggt atctttgccg cactggcgga gtttgagcgc gaactgattg
     1381 ctgaaagaac gactgcaggt ctggcatcag caagagcccg tgggcggaac ggcggccgac
     1441 cttataaaat gacgccagtc aaactgcgac tggcaatggc atcaatggga caatcagaaa
     1501 caaaggtcag tacgctatgc caggaacttg ggataacccg gcaaactttg tacaggcata
     1561 tttcccctgt tggtcaactg cgggcggacg ggatcaagct gctcaaccgt ggataatttg
     1621 aacggacgga aaaatctggg gttccggcgt agtaccccta tcacctccac atttttgcaa
     1681 cagtgcctta taaatggcag ccttatgttt acttgccaag atgggctacc atatgatgtt
     1741 ttatactgag caatattaat attatcttta atggaaaaat taagcccact aagtgaccca
     1801 ctgctatatg gctctattgt gaagacgcct gagggtaaaa atttatacat ggttgtccct
     1861 atgtctatta ttgcaaggtt gacaatatta ttcgttttat aaatttgagc gtttaaaatc
     1921 acacatcaaa gcaattagtc aggataaaca acaataccca gtgcttcgag aatcagttct
     1981 tgctgccagg ctgcaatttt gatacctgat gtatcgactt tgcggggatc taaaccgtcg
     2041 agttcggcgt ggcataaatt ggcaccctgt aggctaaatt gcccccagac atcttcggaa
     2101 aaaacacctc gacttaagtc tgactctttc agtgatgcac ccgctaggtt cgttcctatc
     2161 cagcgatttt caaacaactc acatttttct aaacaaaccc tctccatatt ggcataggaa
     2221 agattacatc cagaaataaa tgctgagcaa aagtacatac gattactcac ttgatgggca
     2281 aagtttgttc gggaaaagtt ggcacctttt aaatcacacg cacggaactc tataccgtag
     2341 caattggcat tactgaagtt tgccatcgca agttggcatt gttggaaact tgcatcacga
     2401 agatctgcga catcaaagtg gcagccttcg atatcaccct gttcaatgaa cttgcagttg
     2461 acgaatgtcg tatcacgcaa gttagcacgt cgaaagtcgc tgcgaatgaa tgtgcaagcg
     2521 gtgaaggtga gatcacttaa gtctttatgt gaaaagttgt ggtgccgata tgtatgattg
     2581 taggtttcca tgagtactcc ttgttgaaag gagggctaga ctaccattat acatatgcca
     2641 agacattaaa ataaaagcct gttacatcaa cacattacaa cccctcaatt tacctgtttt
     2701 aagtggtcaa attggcgcgt agagcgccta tcgctcttgc attggcacgc ggccctgttg
     2761 aaaaaagtta ttcgctttag atagggttag gagagccgtg cttcgccggt aaaaaatcgg
     2821 actatccgac gcagggcgga ctcatcggcg gagaagcaaa ctttgactat atctccctac
     2881 acttggaaga gggctagact ggccccatag atcaccagac acttcgactc tcttaaaata
     2941 agaggtagtc ttggaactat gtttaatacc agtcagaacg ataagatggt tgaagtgtta
     3001 tcaggacctg agcggcgtcg gcgtcgtaca ccgcaggaaa aaattgccat tattcagcag
     3061 actatggagc ccggtatgac cgtgtctcat gtcgcgcgcc tgcatggcat caatgcaaac
     3121 cagatattca aatggcgcaa gcaatattaa gacggttcac tgacggctgt tgcatcgggc
     3181 gaggaagtgg tgccggcctc cgaactcgct gccgccaata agcaaattcg cgaactccag
     3241 cgccttctgg gcaaaaagac gatggaagcc gagatactca aagaggccgt ggagttcggc
     3301 cgggcaaaaa aatggattgc gcatgcgccc tcgttgcctg ggaacgacga ataagcgacg
     3361 tttgcagaag tcttggcgtg tcgcgtgcgc agttgagcat tcgggttcac cggccatctg
     3421 actgacagga tcgcagacgg cagccccgtt ctgacgatac caccgtattg tcccggataa
     3481 acatggcggt ggctgacctg ccgacgtatg gttatcgccg tgtgtgggcg ctgctgcgac
     3541 gggagtcgga gcgggacggc ctgcctgtgg ttaatgcaaa gcgggtgtat cgcattatga
     3601 gaacgcataa tctgcttctt gaacgtaaac ccgctgatcc ttgccgtaag cgggcccata
     3661 aggggcgcgt agcagtagcg gaaagtaacc ggcgctggtg ctcagatggc tttgagttcc
     3721 gctgtgataa tggcgaaaag ctgcgggtga ccttcgcgca ggactgctgc gacagggaga
     3781 tcattgactg ggcagcgagc accggaggct atgacaaaga aacggtgcag gatgtcatgc
     3841 tgggtgcggt ggaaaaacgc ttcggaaggc agttgccaac agtgccggcg ttcgcccggt
     3901 tgctgggact ggagccttgt acgacagcag tgcgaagccc ggaaagcaat ggcatagcag
     3961 aaagcttcgt gatgacgata aaacgggact acatcagcat caggatttta ggggtctgac
     4021 gctcagtgga acgaaaactc acgttaagca acgttttctg cctctgacgc ctcttttaat
     4081 ggtctcagat gtcctttggt caccagttct gccagcgtga aggaataatg gccgagcata
     4141 ttgatatgtc cgtggcaaag cggggagagg cgtgcgatat cttcatcatt cagtgtttca
     4201 ccctgcgccc ggagatgatc cagggctgcc tgcatataaa tagtgttcca taacacgacg
     4261 gcgttagtga ccagccccag tgtgcccagt tgatcttcct gaccgtcggt atatcgtttt
     4321 cttatctcac ctttttgacc gtgacagatg gctctggcaa cggcatggcg actttctccc
     4381 cgattaagct gggtcagaat gcgccggcgg taatcttcat catcaatata attaagcaga
     4441 tacagcgttt tgttgatgcg ccccacttca atgattgcct gagtcagtcc ggaaggacgt
     4501 tcacttttca gcaatgaacg gaccagcact gaaacctgta ctttgcccag cttcagggag
     4561 ccagcggtcc ggatcatttc gtcccactga aggactattt ttcggggatc tgattgccct
     4621 ctggcaatat cattcagcac gccatagtcg gcatcatggt ccattcgcca gaaaaccgaa
     4681 gcaccggcat cagccaggcg tggagaaaac tggtatccca gcagccagaa aaggccaaag
     4741 acaagttcgc tggcacctgc tgtatcggtc ataatttcgg ttggattcag cccggtctcc
     4801 tgttccagaa gaccttccag cacaaagata gagtccctca gcgtccccgg tataacgatg
     4861 ccatgaaagc cggaatactg atcggacaca aagttgtacc aggtgatccc tctgttatta
     4921 ccaaagtatt tgcggttcgg tccggcattg attgttctga ctggcgtaac aaagcgcatt
     4981 ccatctgcag atgccacttc tcctccaccc catatctgtg ccagtggcag cgttgcctga
     5041 aaatcaacca gtctggcatt agcgctggtg atagtttcag cccgcagata gttcgctttt
     5101 gtccagttca gccggtgtcg ggtcagtgca ggaacatttg atctgatcag tggttccaga
     5161 ccgatattgc aggcttcagc catcagcacg gcgctgatgc tgacgggcag atcatcaact
     5221 ctggcactgg cttcactagc atggaaaaac tcatcagcaa atccggtatg ggcgttaatt
     5281 tcgagcagca actccgttaa atccaccgga gggagtagat cactgatcat tttgctcagt
     5341 cgtttcagac tgtccggctc atcaagactg gcgaggggag aaattgtcaa ccggggcttc
     5401 gggccagaaa catcgagttc gacagcctca ttttcgcaaa gacgtgcagc aacctgtctg
     5461 taacgactat caagctgatg acccagagat tttattgctt cctgcgggtc tgtcgggtgc
     5521 cccaaagaac gataaacctt aatccggttt gcctgccagt cagcaccctg tagtaatctt
     5581 gcacgaggat ctccccaccg gttactgccg gtaacgtaga catccctccg cctcagacta
     5641 tcctgcagtt tactgagaaa gcagagcgtg tatcccctgc gggtgatatg tttttccttg
     5701 ttaatcacca gccgtttcca tgaccgactg ataatttccg ttggtgcgtc gtcaaaaaac
     5761 tgccgccgtg agctgaactc ccggctgagg tagtcacagg cattcagagt ggtaaccccg
     5821 gcaggtgcgg atgaaaattt aacggtattc agcagatggg gcaggaaacg acgaacgcgc
     5881 ccgtactgct ccaccatttc ttcatgaaaa ttatcgtctg agggccgggc aatttcacgg
     5941 acaagcgtga tgatttcagc cagcttttgc cttgggatgt agctgaacac ctcagcacga
     6001 atcgattcgt ccggtgtttc ttctttcagc aggtacgaac atgcgctggc gagcgccaat
     6061 gcagatttat ccagatcctt cagcgagcgg agccgttttt tctgcccaat ctttctggcg
     6121 tcacggatga taacggccag catggcgtcc agaacgtcca atgcatcatc cagcgccagc
     6181 gtttcccatg caaggacaaa ggcaaccaga accgccatcc ttttctgcgg tgacatcctg
     6241 gcaatattga acaccgaagt cataccagca taacgtgcga gatttttcag gcgcacagcc
     6301 gggagtgtac tcaggttttc agcatgcagg ccaaaatcgt tcagagtttt ccagcgttca
     6361 attgcttcat taaacgccgg accactgatg gtcacagggc cctttttcag tgattccagt
     6421 aaagacaggc ggctgcaatc agttggcccc agcagcatct ccagctgtga acgctgttcg
     6481 gctgacggta tcagtgccag tttgttccac aggcgcaacg tcgccttttc ccttacctct
     6541 gaaatcaacc gggtcagcgt agtggctccg gggagaataa tacgatgttg cataagccac
     6601 cctgtcgcca gatcgaaaag caggccagga cgttcgttgc ttatccagct ccgggtatat
     6661 aaaagacggg taaggcgaaa tgtccagggc caggcaaatt cacgatactg atagtgctga
     6721 cgtatcagcg ctgcatgctc acggcgggta ttttccctct gaccgtattc tgcaagaacg
     6781 gtgatatcac gaatcccgag ctgtctggcg gtaaaatgcc ggacgccgga aggaatatga
     6841 ttcatatcgg tgaggaaggt gcccagaaaa cggacacatc caatttgcag ggcaatgccc
     6901 agacggttgt gatcacctct gctttttccg ataaattcct tgtctgcttc atcaaggtga
     6961 aaatatcgtg ccagctgaag ctcatccggt tcaccggtga atctgccata gctttcagtc
     7021 tgctcagtgg tcagaaagtc aacgggcata tcggcctccc tgcctgacgg gcatttagta
     7081 acatttttcc aaccgtacga aatgttataa attatcggac atcgtaaaac tgttacatta
     7141 atatgtctat taaatcgtaa atttgtaata atagacatga gttgtccgat attcgattta
     7201 aggtacattt ttatgcgact ttttggttac gctcgggtct caaccagtca gcagtctctt
     7261 gatcttcagg tcagagcact caaagacgca ggtgtgaaag caaaccgtat atttaccgat
     7321 aaggcatccg gcagttcaac agaccgggaa gggctggatt tgctgaggat gaaggtggag
     7381 gaaggtgatg tcattctggt taagaagctc gaccgtcttg gccgcgacac tgccgatatg
     7441 atccaactga taaaggaatt tgacgctcag ggcgtggcag tccggttcat tgatgacggg
     7501 atcagtaccg acggtgatat ggggcaaatg gtggtcacca tcctgtcggc tgtggcacag
     7561 gctgaacgcc ggaggatcct agaacgcacg aatgagggcc gacaggaagc aaagctgaaa
     7621 ggaatcaaat ttggccgcag gcgtaccgtg gacaggaacg tcgtgctgac gcttcatcag
     7681 aagggcactg gtgcaacgga aattgctcat cagctcagta ttgcccgctc cacggtttat
     7741 aaaattcttg aagacgaaag ggcctcgtga tacgcctatt tttataggtt aatgtcatga
     7801 taataatggt ttcttagacg tcaggtggca cttttcgggg aaatgtgcgc ggaaccccta
     7861 tttgtttatt tttctaaata cattcaaata tgtatccgct catgagacaa taaccctggt
     7921 aaatgcttca ataatattga aaaaggaaga gtatgagtat tcaacatttt cgtgtcgccc
     7981 ttattccctt ttttgcggca ttttgccttc ctgtttttgc tcacccagaa acgctggtga
     8041 aagtaaaaga tgctgaagat cagttgggtg cacgagtggg ttacatcgaa ctggatctca
     8101 acagcggtaa gatccttgag agttttcgcc ccgaagaacg ttttccaatg atgagcactt
     8161 ttaaagttct gctatgtggt gcggtattat cccgtgttga cgccgggcaa gagcaactcg
     8221 gtcgccgcat acactattct cagaatgact tggttgagta ctcaccagtc acagaaaagc
     8281 atcttacgga tggcatgaca gtaagagaat tatgcagtgc tgccataacc atgagtgata
     8341 acactgctgc caacttactt ctgacaacga tcggaggacc gaaggagcta accgcttttt
     8401 tgcacaacat gggggatcat gtaactcgcc ttgatcgttg ggaaccggag ctgaatgaag
     8461 ccataccaaa cgacgagcgt gacaccacga tgcctgcagc aatggcaaca acgttgcgca
     8521 aactattaac tggcgaacta cttactctag cttcccggca acaattaata gactggatgg
     8581 aggcggataa agttgcagga ccacttctgc gctcggccct tccggctggc tggtttattg
     8641 ctgataaatc tggagccggt gagcgtgggt ctcgcggtat cattgcagca ctggggccag
     8701 atggtaagcc ctcccgtatc gtagttatct acacgacggg gagtcaggca actatggatg
     8761 aacgaaatag acagatcgct gagataggtg cctcactgat taagcattgg taactgtcag
     8821 accaagttta ctcatatata ctttagattg atttaaaact tcatttttaa tttaaaagga
     8881 tctaggtgaa gatccttttt gataatctca tgaccaaaat cccttaacgt gagttttcgt
     8941 tccactgagc gtcagacccc taaaagaact ttccgctaag cgatagactg tatgtaaaca
     9001 cagtattgca aggacgcgga acatgcctca tgtggcggcc aggacggcca gccgggatcg
     9061 ggatactggt cgttaccaga gccaccgacc cgagcaaacc cttctctatc agatcgttga
     9121 cgagtattac ccggcattcg ctgcgcttat ggcagagcag ggaaaggaat tgccgggcta
     9181 tgtgcaacgg gaatttgaag aatttctcca atgcgggcgg ctggagcatg gctttctacg
     9241 ggttcgctgc gagtcttgcc acgccgagca cctggtcgct ttcagctgta agcgtcgcgg
     9301 tttctgcccg agctgtgggg cgcggcggat ggccgaaagt gccgccttgc tggttgatga
     9361 agtactgcct gaacaaccca tgcgtcagtg ggtgttgagc ttcccgtttc agctgcgttt
     9421 cctgtttggg gtcgtttgcg ggaaggggcg gaatcctacg ctaaggcttt ggccagcgat
     9481 attctccggt gagattgatg tgttcccagg ggataggaga agtcgcttga tatctagtat
     9541 gacgtctgtc gcacctgctt gatcgcggcc gcgatagcta gatcgcgttg ctcctcttct
     9601 ccatccgcgt tccaagctgc ggaaaggcac ccataagcgt acgcctggtc gagcaggcga
     9661 cgcggatcga cgtccagcgc acgagagaat gcgtccgcca tctgtgcaat gcgtctagga
     9721 tcgagacaaa ggtcgtctct gtcagccgga tcgtagaaca tattggcggc gccaaagccc
     9781 acttcaccga ccagaccgac gggatctatc accagccagc cgcgactgga gaacatgatg
     9841 ttttcatgat gcagatcgcc atgtagccca cgcagttccg aggcattgct catcatttga
     9901 tcggctataa tcgccgcgtg gacgtagtca gtttgacaac ctgcgttttg atcatcgcgc
     9961 gcccgctgaa acaaagctgc aaagcgatcc cggatcggga gaagggcaga aggcaggggt
    10021 tcctcagatg cggcatacag cttcgccatt agttccgctg caatttcggt cgcctggtag
    10081 tcgccgtgct cggcaacgat gtgagagagc attcgctccc cggcatattc gagcaacatc
    10141 agattgttct cacgaccgag caaccggact gctcccctcc cattgcgcca taccagatag
    10201 tcggccccgc gcagttcatc agcaatgtct tctataggtt tcaatccctt gacgattgca
    10261 ggagtcccgt ctggcaatga aactttccaa acgaggctgg aaaaggtgtc cgcaatgaga
    10321 acaggttgcg aaacgtgcca atgagcagga aaaacaggcg gcatgaacat caaccccaag
    10381 tcagagggtc caatcgcaga tagaaggcaa ggcgttcgcg gtcgggggct tcgatcccca
    10441 atacattgaa taggacagcg aaggcgcgct ctgcttcatc tggcgctgcc cagttctctt
    10501 cggcgttagc aatcatgagt gccaaatcgg catagcgatc tgctgttccg agccgcccaa
    10561 ggtcgatcag acccgtgcat tgaagagttt tagggtccac catgaagttc ggcatgcagg
    10621 gatcaccatg gcaaacaacc atatcggtgc gctcttggtc gagccgcacc ggtagctctc
    10681 gttcgacacg agccaaaaga tcgagctgcg gcgtactctt gtcctcgtcc ggtaagaagt
    10741 cgggattgac ggcattgcgg gacaccacat caacggcgcg tccgaacatt cgcgacagcc
    10801 tgcgctcaaa cggacattga tcaaccgata ggctgtgaac agcgccaagt tgctgcccca
    10861 ttgacggcca cgctttgagc aaatccgctc cagacagatc agccgccggt actcccggaa
    10921 ttgccgttat caccaagcat gcaccctcct gttcctcctg ccagttgatg acctcggggc
    10981 aagccacacc tcgacctttg agccaaatga ggcggtcacg ctctccagcg agctcaccgc
    11041 ggcgggaagc aggtgcgatt ttcgcgaagg catgcccgtc accacgtcga aaaacaaaat
    11101 caccagattc tccgcctctg acaggcaacc agtcagaatg cgattcacca aaaaaaatat
    11161 tagttcgatt caatggaggt tccttcagtt ttctgatgaa gcgcgaatat agagaaatat
    11221 cccgaatgtg cagttaacga attcttgcgg tttctttcag cgccgccaat accgccagcc
    11281 cgtcgcgcaa ggggcgcggc tcgtgtgtgc ggatgaagtc agctccacct gcggcggcgg
    11341 caagctctgc agcgagtgtc gcggccccga catcccccgg accacggcct gtgagcgcgc
    11401 gcagaaagga tttgcgcgaa acagacagaa gcaccggcaa atcgaagcgc agccgcaatt
    11461 catcgaaccg cgccagcacc gagagcgagg tttcgggagc agcccccaga aaaaacccca
    11521 tgccgggatc aaggacaagg cggttgcgtt tgataccggc acccgtcagc gccgcgatgc
    11581 gcgcgtcaaa gaacgccgca atgtgatcca tgatgtcgcc agcgggtgcc tcgcgccgat
    11641 ctgcctgccc gtcttgcacc gaatgcataa cgacgagttt ggcagatgat ttcgccaatt
    11701 gcggatagaa cgcagcgtct ggaaaaccgc gaatatcatt gagataggcc acaccacgcg
    11761 acaaggcata ggcttgcgtc gcgggttgat aactgtcgag cgagacggga atgccatctg
    11821 ccttgagcgc gtccagcacc ggcgcgatac gcgcgatttc tgtgtcggac gaaacaggcg
    11881 cggcgtcggg attgctggat gccggaccga ggtcgatcac atctgccccc tcggccatca
    11941 gcttacgcgc ctgcgcaatg gctgcgtctg gcgccagata ccggcctcca tcggagaaac
    12001 tgtccgaggt tatgttgacg atgccgaaaa tgatgagcga tttattcatg ggggcttcta
    12061 taataataat aatcgagcat gagtctcata cggatgctcg ggtcgaaagg gaatccccag
    12121 gcgagtaacc tgtttgcggt gctccattag ctgcaggagc agaatagcat acatctggaa
    12181 gcaaagccag gaaagcggcc tatggagctg tgcggcagcg ctcagtaggc aatttttcaa
    12241 aatattgtta agccttttct gagcatggta tttttcatgg tattaccaat tagcaggaaa
    12301 ataagccatt gaatataaaa gataaaaatg tcttgtttac aatagagtgg gtatcggaga
    12361 cgaagaagga caaggtacat gctgaccgat accaagctgc gcaatctcaa gcccagggac
    12421 aaactctaca aagtgaatga ccgggaaggt ctctatgtgg gggtcgcctc agaaaacgga
    12481 atctatggtc actcccgttt ttgcaacacc gattttgacg acaagttggc ttgcttgaat
    12541 ctatccggcg tctgaatggg attttattcc cgcgcctcga tgagttccgc gcctgatgaa
    12601 cctccagaaa atatacggct tcaatgagcc tttccgtttt acaggttcct caacaggccg
    12661 gtgggccgtt agtatcatca atatcagtat tcgcaaaacc agatgaatga ttgtttaaac
    12721 tggtgtattt ctgcctttat gcttcgtaag tttgctgtcg cgccgtcagt gcccaggcta
    12781 ttctggccag cttgtttgcc agagcacagg tgacgacaaa gttgcttttc cgacacaaca
    12841 actccctgac ccagtcggcc aacttgccag actggtgttc cagtttttgt atgaataccc
    12901 tggcacactg aaccaacaaa gttcggatct ttttgttgcc ccgcttgcta atccctaaca
    12961 atgtcgtccg acctcccgtg ctgtactgtc ggggtaccag ccctgttgcc gccgcaaagt
    13021 cacggctgct ggcgtactgc ttcccgtcgc caatctcagt tgaaatagta ctggcagtca
    13081 gcgttccaac gcagggaata ctcagcaagc gctgtccaac ctcatcttcg tccaactttc
    13141 gtttcaactg agattccaga tctttaatct gctcaacaag atagtgataa tgctgttgta
    13201 atttcagcag taactggctg agataaagag gcaaactact gtcctcaaga agggtactca
    13261 gtcgactaat aacggcagca cctcgcggaa cgctgatacc aaattccagc agaaaagcat
    13321 gcatctgatt agttgttttc accttatcct gaaccaggga ttcacggaca cgatgcagag
    13381 ctcgcattgc ctgctgagat tcggttctgg gctgcacgaa acgcatagat ggacgtgatg
    13441 ctgcttcaca gatagcttca gcatcaacga agtcattttt gttgctttta acgaatgggc
    13501 ggacaaattg cggtgatatc agctttggaa aatgccctaa ctcttccagc ttgcgtgcca
    13561 taaagtgaga accgccacag gcttccatcg cgatggttgt tgccgggcat gtcgccagaa
    13621 attcgattag ctttggtcgg gtgaattttt tacggtaaac ggccttccca cgatgatcct
    13681 gacaatgaat atggaaagag ttcttaccca gatcgatacc aataagcgca atgttttcca
    13741 tgatggttct ccgaatgaaa gcctgtcctc agcatagtac tgggaaggag ggagtgacca
    13801 tctcattaaa taaagcacgc taagccggtt gcagcggtcg tagcggcctg aacttgcccg
    13861 cgccgatctt ggcgctgctg cgccagaggt aatcgccggt gaggttgatg tgctcccaac
    13921 cgagcggcga caggtactgc aacagcgcgt catcaacggc atggccgttg ccacgcagcg
    13981 cgtgcgcagc ccgttccaga tagaccgtgt tccacaacac gacggcagcc gttaccagat
    14041 tgaggccgct agcccggtag cgctgctgct cgaaactgcg gtcgcggatt tcacccaggc
    14101 ggttgaaaaa cactgccctg gccagcgcat tgcgcgcctc gcccttgttc aggccggcat
    14161 gcacgcggcg gcgcagttcc acgctttgca gccagtccag gatgaacagc gtgcgctcga
    14221 tgcggcccag ctcgcggagc gccacggcca ggccgttctg gcgtgggtag ctgccgagct
    14281 ttcggagcat cagggaggcc gtcaccgtgc cctgcttgat cgaggtggcc agccgcagga
    14341 tttcgtccca atgggcgcgg acgtgcttga tgttgagcgt gccgccgatc atgggtttca
    14401 gcgcgtcata ggcggcgtcg cccttcggga tgtagagctt ggtgtcgccc aggtcgcgga
    14461 tgcgcggcgc gaagcggaag cccaggaggt gcatcagggc gaagacgtga tcggtgaagc
    14521 ccgccgtgtc ggtgtaatgc tcctcgatcc gcaagtcgga ctcgtggtac agcaggccgt
    14581 cgagcacgta ggtcgaatcg cgcacgccga cgttcacgac cttggtgtga aatggcgcgt
    14641 actggtcaga aatgtgggtg tagaacgtcc gccctgggct gctcccgtat ttcgggttga
    14701 tgtggccggt gctctcggcc ttgctgccgg tgcggaagtt ctggccgtcc gacgatgagg
    14761 tggtgccgtc gccccagtgc tcggcgaagg gatggcggaa ctgtgcgttg accagatcgg
    14821 ccagcgccgc cccgtaggtt tcgtcgcgga tgtgccaggc ttgcagccaa gccagcttgg
    14881 cgtaggtcgt gccggggcaa gactccgcca tcttggtcag gcccaggttg atcgcgtcgg
    14941 cgaggatcgt ggtcagcaac aggttcttgt ctttggccgg gtcgcccgat ttcagatgcg
    15001 cgaaatgccg agtgaagccc gtccattcgt ccacctccag cagcagttcg gtgatcttga
    15061 cgtgcggcag gatcattgcc gtctggtcga tcagcgcttg ggcggtgtcg ggtaccgccg
    15121 cgtcgagcgg cgtgatcttc aagcctgact cggtgatgat ggcgtccggc agctcgttgg
    15181 ccgtcgccat acggttgacg gtggcaagct gtgtttccag cagcgtcagc cggtcgttca
    15241 ggtaccggtt gcagtcggtg gccacggcca gcggcaattc gctggcctgc ttgaggctgg
    15301 cgaatttcgc gggcggcacc aggtagtcct cgaagtcctt gaactggcgc gacccctgca
    15361 cccagatgtc gccggaacgc aacgcgttct tcatctccga cagcgcgcac agttcgtagt
    15421 agcgccggtc gatgccggtg tcggtcatga ccagcttctg ccagcgcggc ttgatgaact
    15481 cggtcggcgc gtcggcgggc accttgcggg cgttgtcgct gttcatgccg cgcagcacct
    15541 cgatggcgtc gagcacgtcc ttcgcggcgg gagcggcccg cagctggcac tgttgcaaag
    15601 ttagcgatga ggcagccttt tgtcttattc aaaggcctta catttcaaaa actctgctta
    15661 ccaggcg
//
LOCUS       DAJVUP010000096        15616 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.096, whole genome shotgun sequence.
ACCESSION   DAJVUP010000096 DAJVUP010000000
VERSION     DAJVUP010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15616
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.096"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..899
                     /locus_tag="OQQ75_002703"
     CDS             <1..899
                     /locus_tag="OQQ75_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1976971.1"
                     /translation="RIIICESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRT
                     VRTVDSYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEK
                     GQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRT
                     VTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYY
                     SVSSLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYE
                     IYGMWIDDMNDEQIAMLNARLS"
     gene            951..1886
                     /gene="ttcA"
                     /locus_tag="OQQ75_002704"
     CDS             951..1886
                     /gene="ttcA"
                     /locus_tag="OQQ75_002704"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HCS1976972.1"
                     /translation="MQENQQITKKEQYSLNKLQKRLRRNVGEAIADFNMIEEGDRIMV
                     CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGVEYKI
                     VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL
                     NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN
                     LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD
                     LAFDREEIPLQPAGWQPEEDENQLDELRLNVVEVK"
     gene            complement(2015..3388)
                     /gene="dbpA"
                     /locus_tag="OQQ75_002705"
     CDS             complement(2015..3388)
                     /gene="dbpA"
                     /locus_tag="OQQ75_002705"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HCS1976973.1"
                     /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVR
                     VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK
                     ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD
                     MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ
                     QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE
                     QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR
                     AGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLEAEMATLCIDGGKK
                     AKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
                     CRVRLLK"
     gene            complement(3834..4817)
                     /gene="zntB"
                     /locus_tag="OQQ75_002706"
     CDS             complement(3834..4817)
                     /gene="zntB"
                     /locus_tag="OQQ75_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HCS1976974.1"
                     /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH
                     LNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPD
                     QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE
                     FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW
                     MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV
                     FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL"
     gene            5072..6304
                     /gene="dgcM"
                     /locus_tag="OQQ75_002707"
     CDS             5072..6304
                     /gene="dgcM"
                     /locus_tag="OQQ75_002707"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcM"
                     /protein_id="HCS1976975.1"
                     /translation="MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQ
                     LRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVI
                     IFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
                     LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQ
                     TYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQM
                     QHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGE
                     EFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRV
                     DDALYRAKNDGRNRVLAA"
     gene            complement(6325..6888)
                     /gene="smrA"
                     /locus_tag="OQQ75_002708"
     CDS             complement(6325..6888)
                     /gene="smrA"
                     /locus_tag="OQQ75_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA endonuclease SmrA"
                     /protein_id="HCS1976976.1"
                     /translation="MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQL
                     DNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMV
                     FSFIHQALADGLRNVLIIHGKGREDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG
                     SGACYVALRKTAQAKQENWERHAKRSR"
     gene            complement(7218..8126)
                     /locus_tag="OQQ75_002709"
     CDS             complement(7218..8126)
                     /locus_tag="OQQ75_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1976977.1"
                     /translation="MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELE
                     EGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMG
                     ASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHE
                     FTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQT
                     PQVGVVCETFSACISLVAKSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQ
                     RRDSRQTPLTPSLITQFRRECGYLQS"
     gene            8302..9602
                     /gene="abgA"
                     /locus_tag="OQQ75_002710"
                     /pseudo
     CDS             8302..9602
                     /gene="abgA"
                     /locus_tag="OQQ75_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415854.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate hydrolase subunit AbgA"
     gene            9602..11047
                     /gene="abgB"
                     /locus_tag="OQQ75_002711"
     CDS             9602..11047
                     /gene="abgB"
                     /locus_tag="OQQ75_002711"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate hydrolase subunit AbgB"
                     /protein_id="HCS1976978.1"
                     /translation="MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLA
                     SALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTP
                     GENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV
                     FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANFPHLGRSALDAVTLMT
                     TGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAK
                     IAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQ
                     ATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDV
                     SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGL
                     LQECQQEHQQVTDTQPYHCPIPKNVTLSSLK"
     gene            11084..12610
                     /gene="abgT"
                     /locus_tag="OQQ75_002712"
                     /pseudo
     CDS             11084..12610
                     /gene="abgT"
                     /locus_tag="OQQ75_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate transporter"
     gene            12621..13136
                     /gene="ogt"
                     /locus_tag="OQQ75_002713"
     CDS             12621..13136
                     /gene="ogt"
                     /locus_tag="OQQ75_002713"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HCS1976979.1"
                     /translation="MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI
                     HYRKEGYERISATNPGGLSDKLSDYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC
                     GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE
                     WLLRHEGYLLL"
     gene            13331..14083
                     /gene="fnr"
                     /locus_tag="OQQ75_002714"
     CDS             13331..14083
                     /gene="fnr"
                     /locus_tag="OQQ75_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HCS1976980.1"
                     /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN
                     IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD
                     AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL
                     LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF
                     QKSGMLAVKGKYITIENNDALAQLAGHTRNVA"
     gene            14235..15185
                     /gene="uspE"
                     /locus_tag="OQQ75_002715"
     CDS             14235..15185
                     /gene="uspE"
                     /locus_tag="OQQ75_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspE"
                     /protein_id="HCS1976981.1"
                     /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF
                     SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQ
                     EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV
                     NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFEPSVYN
                     DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI
                     SAAFLGNTAEQVIDHLRCDLLVIKPDQYQTPVELDDEEDD"
     gene            complement(15235..15493)
                     /locus_tag="OQQ75_002716"
                     /pseudo
     CDS             complement(15235..15493)
                     /locus_tag="OQQ75_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309940.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2534 family protein"
BASE COUNT         4005 a         3895 c         3837 g         3879 t
ORIGIN      
        1 tcaggataat aatttgtgag agtaccccga tatcgcatat tcgttatagc gatatcttaa
       61 actaccggaa tgaactgctg catggagaaa cgctttacct agataatcca agatccaaca
      121 aaaaaggaag aaccgtgcgc acagttgata gctatatcgc cctgctctgt tcgttgttac
      181 gttttgcgta tcagtcggga tttatatcaa ccaaaccatt tgaaggagta aaaaaattac
      241 agcgaaacag aataaaacct gacccgttat ctaaaacaga attcaatgca ttaatggaaa
      301 gtgaaaaagg acagagccaa aacttgtgga aatttgccgt ttactccggg cttcgtcacg
      361 gggaactggc agctctggcg tgggaggatg tggatttcga gaagggaatt gtgaatgtca
      421 gaagaaacct gacgatactt gatatgttcg gtcccccaaa aacaaatgcc gggatccgga
      481 cggtaacatt actgcagccg gctcttgaag cactgaagga gcaatacaaa ctgaccgggc
      541 atcatcgcaa aagcgaaatc actttttatc atcgggagta cggcagaact gaaaagcaaa
      601 aactgcattt tgttttcatg cccagggtgt gtaacgaaaa acagaaacct tattactcgg
      661 taagcagttt gggtgcaaga tggaatgcag cagtaaaacg tgctggtatt cgccgccgta
      721 atccgtacca tacgcgacat acttttgcct gctggctgtt gacggcagga gcgaacccgg
      781 catttatagc cagccagatg gggcatgaaa ctgcgcaaat ggtgtatgaa atttacggta
      841 tgtggattga tgacatgaac gacgaacaga tagccatgtt gaatgcgcgg ttatcgtagt
      901 tgcaaagttt gcccccaatt tgccccattt agtaccagag aactgaaata atgcaagaaa
      961 atcaacaaat tacaaagaaa gaacaataca gcctgaacaa attacaaaaa cgtctacgtc
     1021 gtaacgtggg cgaagccatt gctgacttca atatgattga agaaggcgat cgcatcatgg
     1081 tttgcctctc agggggtaaa gacagctata ccatgctgga gattctgcgc aatttgcagc
     1141 aaagcgcgcc aatcaatttt tcgctggtgg ctgttaacct cgatcaaaag caaccgggct
     1201 tcccagaaca cgttctgccc gtgtatcttg aaaagctggg cgttgagtac aagattgtcg
     1261 aagagaacac ttacggtatc gtgaaagaga agattccaga gggcaaaacc acttgctcac
     1321 tgtgttctcg ccttcgtcgc ggtatccttt atcgtaccgc aacggaactg ggggcgacga
     1381 agatcgcgct gggtcaccat cgtgacgata tcctgcagac gttgttctta aatatgttct
     1441 acggcggcaa gatgaaaggt atgcctccga aactgatgag cgatgatggc aaacatatcg
     1501 ttattcgtcc gctggcctac tgccgcgaga aagatattca gcgatttgcc gatgcaaaag
     1561 cgttcccgat tattccgtgc aacctgtgcg gttcacagcc taacctgcaa cgtcaggtga
     1621 ttgctgacat gttgcgtgac tgggataaac gttatccagg gcgtatcgag acgatgttca
     1681 gcgcgatgca gaatgtggtg ccgtcgcatc tgtgcgatac caacctgttc gatttcaaag
     1741 gcatcaccca cggttctgaa gtggttaacg ggggtgatct ggcgtttgat cgcgaagaga
     1801 tcccactaca accggcgggc tggcagccag aagaagatga aaatcagttg gatgagttac
     1861 ggctgaatgt ggttgaagtg aaataaccag gatagcgccc gatgcgcaag cgtatcgggc
     1921 tactcttatg gaggccggat aagacgcggc caacgtcgca tccggcaatg ccgaagaaga
     1981 tgtttactct tgcacccggc aattcaacat ttcattattt taataaccgc acccggcacg
     2041 tttttccttt aatcttcccg ccctgtaact gtttccatgc tttatgagca acagcctgac
     2101 ggaccgcgac atagacatgc gccggatgca cggcgatttt gccaatatct gcgccatcaa
     2161 gcccgatatc tcctgtcagt gcacctaata catcacccgg gcgcattttg gcttttttcc
     2221 cgccatcgat acacaacgtt gccatttctg cttccagcgg cacaatggaa ctattagctg
     2281 gcggcgtttg ccagttaagt tttatctgca acatgtcaga aatgatattg gcccgctgtg
     2341 cttcttccgg agcacagaaa ctgatcgcca gaccgctatt tcctgcacga gctgtacggc
     2401 cgatgcgatg tacatgaact tcagggtccc acgccagctc aaagttcacc accagctcaa
     2461 gcgatttaat atccagacca cgcgcagcaa catcagtcgc aaccagtaca cgggcgctac
     2521 cgttagcaaa acgtaccagg gtctgatcgc gatcgcgttg ctccaaatcg ccgtgtaatg
     2581 acaatgcact ttgccctact tcattcagcg cgtcgcagac agcctggcaa tcttttttgg
     2641 tattgcaaaa caccacgcaa gaggatggct gatgcaagct taataaccgt tgcaacagag
     2701 gaattttgcc tttgctggat gtctcataaa attgttgttc aatgggtggc aaagcatctg
     2761 ttgagtcaat ttcaatcgcc aaaggatcgc gttgcactcg tccgctgatt acggcgatgg
     2821 cttccggcca ggttgccgaa aacagaagcg tctgtcgaga tgcaggcgca aaacggatga
     2881 catcatcaat ggcatcgcta aatcccatat ccagcatgcg gtcggcctca tccatcacca
     2941 aagtattcag cgcatccagt gataccgtgc ctttttgcaa gtgatccagc aaacgacccg
     3001 gcgttgccac gataatatgc ggcgcatgtt gcaacgaatc acgctgcata ccgaacggtt
     3061 gaccaccgca caacgtcaaa attttggtat ttggcagaaa acgcgccagc cgacgcaatt
     3121 cacctgccac ctgatccgcc agttcacgcg taggacacag cactaaagcc tgggtttgaa
     3181 atagcgacgc atcaatttgc tgtaacaagc cgaggccaaa agccgccgtt ttgccgctgc
     3241 cggttttcgc ctgcacgcga acatcttttc cggcaaggat cgccggaagc gcggcggcct
     3301 gcaccggcgt catagttaaa taacccaact cattaaggtt cgtgagttgg gcgggaggca
     3361 aaacattcag ggtagaaaaa gcggtcacaa tctattctcg tggtcatcga cgcaaagtta
     3421 gcaggcgcgt atcctcgcag atctacgcgg gtggtgggtc aggcatgggt tgcgggcgag
     3481 ggatcggatc gggcactgga acaggatcgc caggaatcgg ttcagggaca ggaatttgca
     3541 aataaataag tgtcgtcata tttccctccg gtcattgggt ggactcttaa agggtagacg
     3601 ctgataaata acaggcaaaa aaaagccgac tcatcaaagt cggcgtcgta cgaatcaatt
     3661 gtgctatgca gtaattcaaa aaaggaagta agacaatatg gagcgcaacg cccatcgctt
     3721 gacgttgcat tcacctgcaa gggagatatt gccctgaatg ggtagagagt ttattgactt
     3781 cgctcaaact ttgcggcgtt tttgtataca gacagccgga aaaattgctt ttgttacaac
     3841 catttactac gatgcaacca taaagcaaca ccaccaataa gaacaactaa cagaatacaa
     3901 aaaattgaaa atccgaattg ccacccgccg ccagggatcc caccaaggtt gacgccaaat
     3961 aaccctgtca gaaaggtact gggtaaaaag accattgcca tcaatgacat tgtataggta
     4021 cgacgagcta aattttcctg catcacctga gcgatttcat ccgccatcac gccagtccgt
     4081 gctatacagg cgtcgatttc gtcaagaccg cgcccaaggc gatcggcaat atcctgcatc
     4141 cgacggcgtt ggtcatcgct catccacggc aaacgttcac tggcaagacg agcataaaca
     4201 tcacgttgcg gtgccatata gcgacgcatc acgattaatt gtttgcgcag cagagccagg
     4261 aatccacgcg gtggaatttg ctgatcaagg agattatctt caaggtcgat aattttatcg
     4321 tgcagctgct cgataaattc gctggaatga tcggtcaacg catcgcacac atccaccagc
     4381 caccctccgc aatcggtcgg acccgtgccc tcttccagat cgctcaccac atcgtccagc
     4441 gccagcactt tgcgttgtcg ggtcgaaaca attaaccgcc cgtccatata tacacgcatg
     4501 gcgaccagtt gatcggggcg ttcatcggtg ctgccgttta tacagcgcaa tgtaatcagc
     4561 gtgccttcac cgagacggct gactcggggc cgtgtgctct cgcctgccag cgcatcacgt
     4621 acgttattgg gaagcagcgg tgttgtcgcc agccattggg cgctatcatg gtgtacataa
     4681 ttaaggtgga gccagcaggg atgcgcttca tcaatcacat ctgtattttc cagcggttta
     4741 acgccgcctc taccatccag catccaggca aatactgcat ccgggacatt aacgtccgat
     4801 cccttaatcg cttccacagt gcctccatca tcaacgcatt attttgtagt ctagccttct
     4861 ggccctgtta cgcaacatct catcacccca ttaccctgaa atgattaata aaattctgtc
     4921 taaattgaat acaaaaagca aaatgctttt ccgtatacaa accgtgtgaa gtgttaaata
     4981 gcgtctatca ttatcagaat tatctgatca tatgacgtgg cttttttgcg atcggatagc
     5041 aacaaaaatt gataaaaata acgggatctc aatgattacg cacaacttca ataccctgga
     5101 cttactcacc agtcctgtct ggattgtttc gccctttgag gaacagttaa tttatgccaa
     5161 tagcgcggcg cgactgttga tgcaagacct cacgtttagt cagctacgaa ccggacccta
     5221 ttccgtctcc tcacaaaaag aactgccgaa atacctctcc gatctgcaaa accaacacga
     5281 tattatcgaa atcctcactg ttcagcgtaa agaagaggaa acagcattaa gctgtcggct
     5341 tgttttgcga gagctgacag aaacagaacc ggtgattatt ttcgaaggta tcgaagcgcc
     5401 ggcaacgctg ggtttaaaag ccagtcgctc ggcaaattat cagcgcaaaa aacaaggttt
     5461 ttatgcgcgc ttttttctga ctaactctgc accaatgttg ttgattgacc cctcacgaga
     5521 tggccaaatc gtcgatgcta acctcgccgc gctcaatttc tacggttata accatgaaac
     5581 gatgtgccag aaacatacct gggaaattaa tatgctcggg cgtcgcgtca tgcctatcat
     5641 gcatgaaatt tcgcatttac ccggcggtca taaacctttg aattttgttc ataaactggc
     5701 ggatggatct actcgtcatg tgcagaccta tgccgggccg attgaaattt atggcgacaa
     5761 gctcatgtta tgtattgtgc atgatattac tgagcaaaaa cggctggagg agcagctgga
     5821 acatgctgct caccatgacg cgatgaccgg attactgaat cggcgacagt tttatcacat
     5881 tacggaacca ggccaaatgc agcacctcgc catcgcccag gattacagct tgttgctcat
     5941 cgacaccgat cgttttaaac acattaacga tctctatggg cattctaaag gtgatgaggt
     6001 gttatgcgcc ctcgcccgca ccctcgaaag ttgcgctcgc aaaggcgatt tggtgtttcg
     6061 ttggggaggc gaagagtttg tcttattgct accaagaacc ccactggata ccgcgctttc
     6121 gctggctgaa actatccgtg taagcgtggc caaagtgagt atttcgggct taccacgttt
     6181 taccgtcagc attggtgtgg cgcatcacga aggaaatgaa agcatcgatg aactgtttaa
     6241 acgcgttgat gatgctttgt atcgggcgaa aaatgatgga cgcaaccgcg tgctggcggc
     6301 ataagccgcg gatgcgtctc gagatcaacg gctgcgctta gcgtggcgct cccagttttc
     6361 ttgcttcgcc tgcgccgttt tacgtagtgc gacgtaacac gccccgctgc cgccatgatg
     6421 cggtagcgcg gtgcaatatg cctgaacatc atcaaattcg gtcagccagc gcgccacata
     6481 gctgcggaca atattggcat gcgatttatc ttcccgccct ttaccatgaa taatcagcac
     6541 attacgcaaa ccatccgcca gggcttggtg aatgaaactg aacaccattt tgcggcactc
     6601 ttccaccggc tggcgcaaaa gattcaggct cgcctgttgc ggatatttac cactgcgcag
     6661 cttatccagc accccatgtt gcaacccttc ccgccgaaac tccagcggct gacttagcgg
     6721 gatgatgtcg agaaatccgg tggtgaggaa attatcaagc tgcagcgtgt cgatacgctg
     6781 cggcgcacgt tggttacgcg ttggatgcca gtggacatct gtagcacgtt tcagcggctg
     6841 gacatcttcc atggcgtcaa gaaacagcga tttgtcgtca aggttcatgt tacatcctcc
     6901 cgcaattaag agcgcgatat gataaccaga ccgggtcggt ccaacaacgt attaccaaaa
     6961 attccagtaa taagttccaa atattgccga tattttaagc aaaatgctta tgcatgatta
     7021 ttcattcacg atattaataa tgtaacttat attttcgtga aatctgtcac tgaagaaaat
     7081 tggcaactaa aggttaaaac cgttataaca cagtcaccgg cgcagaggag acaatgccgg
     7141 acttaagacg cggatgcact gctgtgtgta ctgtagagtc tggcggatgt cgacagactc
     7201 tattttttta tgcagtttta actttgcaga tagccgcatt ctcgccggaa ttgcgtgatt
     7261 aatgacgggg tcagtggtgt ctggcgacta tcacgccgct gaatcaaata ataggccgct
     7321 ttcggtaaaa tttcgctaac cggcaacatc accagcccct gtccgtgcaa gggatcgcag
     7381 cccatttctt caggcagtat gctgagaaaa tcgctttttg ccaccagact gatacaggct
     7441 gagaacgtct cgcagactac accgacctgt ggcgtttgcg cctgatcgtc aagcaattca
     7501 ctcaactgtt tgtagtaact gccgtgtggc gtcggcattg tccagctgta atccagtaac
     7561 tgtttgatcg aacgggcacc aatggcgggg tgtcccgggc ggcaaaagat cgcgaattgc
     7621 ttttccagta atttctcaaa agtaaattcg tggtcgtacg gtccctgata ataggtattg
     7681 atggtgaaat ccaattctcc ctgacgcaat tcattaatca tcgacaccag ttgcccttcc
     7741 ataatgcgta cttttacctg cggatgctgc tgatgaaaac gagatatgac agctggcatc
     7801 agactgcggg aaatactggc ccccatgccg atattaatct gccctgccag ttgcccttgt
     7861 cgttggcgaa tatcctcttg ggctgcgcgc agctcttcaa gaataagact ggcgtgctga
     7921 taaaaacttt caccggcatc agttaacgtc acgcctttac tacggcgaaa aaagagttgc
     7981 gccgctaatc cttcttccaa ctcctgaata gatttactca gtgccggttg cgacatattc
     8041 aacattcggc tcgctccgcg aatgctgccc tgacgagcca cttcaacaaa agcacgaatt
     8101 tgatgaattt ttacctgaaa agccatgacg ccaccgataa ccgttattta tcagaccaaa
     8161 gaaactggca tctactttaa tgcagatgat tgtgtcaggg taatttatga acggttaaaa
     8221 ctgtgaaaaa tcagttagtg ataagtaaaa actatcgcta cgtgaaccgg gtcacacttt
     8281 ttactgatga cgggaaaggt tatggagtct ttgaatcaat ttgttaattc gcttgcccca
     8341 aaattatcgc actggcgacg tgattttcat cactatgcag agtctggctg ggtggaattc
     8401 cgcactgcca cccttgttgc ggaagaattg cagcagctcg gctattcact ggcgctgggc
     8461 cgcgaagtag ttaatgaaag tagccggatg ggactacctg atgaactcac tctacaacgc
     8521 gaattcgagc gcgctcgtca acagggtgcg ctagcacaat ggattgcggt ttttgaaggt
     8581 ggtttcactg gtatcgtcgc caccctggat accggtcgcc ccggtccggt gatggctttc
     8641 cgtgtcgata tggacgcgct ggatctcagt gaagagcagg atgtcagcca tcgcccctac
     8701 cgcgacggtt ttgcgtcatg taacgccgga atgatgcatg cctgtggtca tgatggacat
     8761 accgccattg ggcttgggct agcgcatacc cttaaacaat tcgagtccgg actacatggc
     8821 gtcatcaaac tgatttttca gcctgcagag gaaggtacgc gtggcgcgcg ggcgatggtc
     8881 gatgcaggtg tcgtagatga tgttgattat tttactgccg tgcacattgg cactggcgta
     8941 cctgcgggca ccgtggtgtg cggcagtgat aattttatgg caaccaccaa atttgacgcg
     9001 cacttcaccg gtaccgccgc tcacgcaggc gcaaaaccag aagacggtca caatgccttg
     9061 ttggcggcag cacaagccac tcttgcactg catgcaatcg ccccggagct tccagagtaa
     9121 acgtgggcgt tatgcaggca ggaagcggtc gtaacgttgt tcctgcctcg gcgttgctga
     9181 aagtggaaac acgcggggcc agcgacgtca ttaatcaata tgtttttgac cgtgcacaac
     9241 aagcgattca gggcgcagca accatgtatg gtgtcggcgt tgaaactcgt ctgatgggtg
     9301 cagctaccgc cagttctcct tcgccgcaat gggtcgcatg gttgcaaagt caggcggctc
     9361 aggtcgcggg gggcaatcag gccattgaac gtgttgaagc gcctgcgggt tccgaagatg
     9421 ccacattaat gatggcccgc gtgcagcaac atcaagggca agcctcctac gtggtgtttg
     9481 gcacacagct ggcggcaggt catcacaacg aaaaattcga ttttgacgag caggttctcg
     9541 ctattgccgt cgaaacgctg gcgcgcaccg cgctcaattt tccctggacg cgaggtatct
     9601 gatgcaggaa atctatcgtt ttatcgacga tgcgattgaa gccgatcgcc aacgttatac
     9661 cgatattgcc gatcaaatct gggatcatcc agaaacacgt tttgaagagt tctggtcagc
     9721 ggagcatctg gcttcggcgc tggaatctgc aggcttcacc gttacccgca acgtaggcta
     9781 tatcccaaat gcctttattg cttcgtttgg tcaaggcaaa ccggttatcg ccctgctggg
     9841 agaatatgac gccctggcag gtttaagtca gcaagcaggt tgcgcgcaac ctacatccgt
     9901 gacgcccggt gaaaatggtc acggttgcgg acacaatttg ctgggaaccg ccgcctttgc
     9961 cgctgcaata gccgtcaaga aatggctgga acaatatggg caaggcggca cggtgcgctt
    10021 ttatggttgt cctggcgaag aaggcggctc gggtaaaacg ttcatggttc gcgagggggt
    10081 atttgatgat gtggatgcgg cactcacttg gcacccggaa gcctttgccg gtatgttcaa
    10141 tacccgcacg ctggcaaaca ttcaggcatc atggcgcttt aaagggatcg cagcacatgc
    10201 cgcgaatttc cctcatttgg gacgcagcgc ccttgatgcc gtaacgttga tgaccactgg
    10261 caccaacttc ctcaacgaac atattattga aaaagcgcgc gtacactatg ccatcacaaa
    10321 tagcggcggg atctcgccca acgtggtcca ggcgcaggca gaagtgcttt atcttatccg
    10381 cgcccccgaa atgaccgacg tgcagcatat ttatgatcgg gtcgccaaaa tcgccgaagg
    10441 tgcggcattg atgaccgaaa ccacggttga atgccgcttc gacaaagcct gttccagtta
    10501 tctcccgaat cgcaccttag aaaatgccat gtaccatgcc ctatcccatt ttggtacccc
    10561 ggaatggaac tccgaagaac tggcttttac gaaacaaatt caggctacgc tcccccccaa
    10621 cgatcggcaa aacagtctga ataatatcgc cgcaaccggt ggcgaaaacg gcaaggcttt
    10681 tgcactacgt catcgtgaaa cggtactggc gaatgaggtc gctccatatg ccgccaccga
    10741 taacgtgctt gcggcatcga ctgatgtcgg cgacgtcagt tggaaactgc ctgttgccca
    10801 gtgtttcagc ccctgttttg ccgtcggtac accgctacat acgtggcaac tggttagcca
    10861 ggggcgaaca tctattgctc ataaaggaat gctgctggcg gcgaaaacta tggcagcaac
    10921 cacactcaat ctcttcattg attcagggct attgcaagaa tgccaacaag agcatcagca
    10981 agttacggac acgcaaccgt atcactgccc tatcccaaaa aacgtgacac tgtcatcttt
    11041 aaaataacaa caacaacgca aacacaacaa ccgaggaatg cccatgagta tgtcatccat
    11101 accgtcgtcc tcctaatccg ggaagctcta tggctgggtc gaaagaattg gtaacaaggt
    11161 tccccatcct tttttgctct ttatctattt gattatcgta ctcatggtga cgacggcaat
    11221 tttgtcggcc tttggcgtca gtgcgaaaaa cccgaccgat ggaacgccgg tggtggtgaa
    11281 aaacctgctc agtgtggaag gattacactg gtttttaccc aatgttatta aaaactttag
    11341 cggttttgct ccacttggtg cgatcctggc gctggtttta ggtgccggtc tggcggagcg
    11401 cgtcggctta ctgccagcgc taatggttaa aatggcatcg catgttaatg tccgctacgc
    11461 cagttatatg gtgctgttta ttgctttttt cagccacatt tcttccgatg cggcgttagt
    11521 gatcatgcca ccgatgggtg cgctgatttt tctggcggtg ggcaggcatc cagttgcagg
    11581 tttactggct gccattgcag gcgtaggttg cggctttacg gctaatttac tgattgtcac
    11641 aaccgacgtg ttgctgtcgg ggatccgcac ggaagcggcg gctgcgttca atccgcaaat
    11701 gcacgtcagt gtaattgata actggtattt tatggccagc tccgtagtcg tactgacgat
    11761 tgttggcggc ctgataaccg acaaaatcat cgagccacgg ttaggtcaat ggcagggaaa
    11821 cagcgatgag aaactgcaga cattgaccga aagtcagcgt tttggtttac gcatagcagg
    11881 tgtcgtatcg ctacttttta ttgctgcgat cgcgctgatg gtgatcccgg aaaacgggat
    11941 attgcgcgat ccgattaatc acaccgtgat gccatcaccc tttattaaag gtatcgtgcc
    12001 actaatcatt ctttttttct ttgtggtttc gctggcttat ggcatcgcta cccgcacaat
    12061 tcgacatcag gcggatttac cgcatttaat gattgaaccg atgaaagaga tggcgggatt
    12121 tatcgtgatg gtttttcccc tcgcccagtt tgtcgccatg tttaactgga gcaacatggg
    12181 gaaattcatc gccgtggggc tgaccgatat actggaaagt tcagggctta gcggcatccc
    12241 ggcgtttgtc ggtctggcgt tgctttcctc tttcttatgc atgtttattg ccagtggttc
    12301 cgcaatctgg tcgattctgg cccccatttt cgtaccaatg tttatgctac ttggctttca
    12361 cccggcattt gcgcaaatcc tctttcgtat tgccgactca tccgtattgc ctttagcgcc
    12421 ggtatctcct tttgttccac tgtttcttgg attcctgcaa cgctacaaac cagacgcgaa
    12481 actgggtact tactattcgt tagtcttgcc ctatccgctt atctttttgg tggtatggct
    12541 gctgatgttg ctggcgtggt atcttgttgg tctgccgata ggtccgggga tttacccacg
    12601 tttgtcttaa gagagaacgg atgctgagat tacttgaaga aaaaattgcc acgccactgg
    12661 gtccactgtg ggtgatttgc gatgagcaat ttcgcctgcg ggcggttgaa tgggaagagt
    12721 acagcgaacg catggtgcag ctgctggaca tccattatcg caaagaaggc tatgagcgca
    12781 tttctgccac caacccaggc ggtttaagcg acaagcttag tgattatttt gccggtaatc
    12841 ttagcattat tgatacgctt cccactgcca caggggggac gccatttcag cgcgaagtct
    12901 ggaaaactct acgcactatc ccctgcgggc aggtaatgca ttacggccaa ctggctgaac
    12961 aattgggccg ccctggcgcg gcgcgtgccg ttggtgcggc aaacggatcg aatcccatca
    13021 gcatcgtcgt accttgccat cgggttattg gccgaaacgg caccatgacc ggatatgcag
    13081 gcggagttca gcgaaaagag tggttattgc gccacgaagg ttatcttttg ctgtaaacat
    13141 taaacaattt gtgccagctt gttcacactt ttatgtaaag ttacccttaa caacttaatg
    13201 gttttcaaat agatagacat atatttacat ctaatatcgg aattctctgc tgttaaggtt
    13261 tgcttagact tacttgctcc ctaaaaagat gttaaaattg acaaatatca attacggctt
    13321 gagcagacct atgatcccgg aaaagcgaat tatacggcgc attcagtctg gcggttgtgc
    13381 tatccattgc caggattgca gcatcagcca gctttgcatc ccgttcacac tcaacgaaca
    13441 tgagcttgat cagcttgata atatcattga gcggaagaag cctattcaga aaggccagac
    13501 gctgtttaag gctggtgatg aacttaaatc gctttatgcc atccgctccg gtacgattaa
    13561 aagttatacc atcactgagc aaggcgacga gcaaatcact ggtttccatt tagctggcga
    13621 cctggtggga tttgacgcca tcggcagcgg ccatcacccg agcttcgctc aggcgctgga
    13681 aacctcgatg gtatgtgaaa tcccgttcga aacgctggac gatttgtccg gtaaaatgcc
    13741 gaatctgcgt cagcagatga tgcgtctgat gagcggtgaa atcaaaggcg atcaggacat
    13801 gatcctgctg ttgtcgaaga aaaatgccga ggaacgtctg gctgcattca tctacaacct
    13861 gtcccgtcgt tttgcccaac gcggcttctc ccctcgtgaa ttccgcctga cgatgactcg
    13921 tggcgatatc ggtaactatc tgggcctgac ggtagaaacc atcagccgtc tgctaggtcg
    13981 cttccagaaa agcggtatgc tggcagtcaa aggtaaatac atcaccatcg aaaataacga
    14041 tgcgctggcc cagcttgctg gtcatacgcg taatgttgcc tgatttttcc gcataactca
    14101 ctatccttct gtcatatcat taaatttttc tgatttattg atctggcaga aggttcatca
    14161 ctgtttcatt caccagatat gggttaatct tttaattaca aactgcgttg acagttgttg
    14221 taaggagacc ctgtatggct atgtatcaga acatgctcgt tgttatcgat cctaaccagg
    14281 acgaccaacc agcattgcgg cgagctgttt atttacatca acggattggt ggcaaaatta
    14341 aagccttttt gccgatctat gacttctcat acgaaatgac caccctgctc tccccggacg
    14401 aacgtaccgc tatgcgtcag ggcgtcatca gccagcgtac agcctggatc cacgagcagg
    14461 caaaatatta tctcaatgct ggcgttccca ttgaaattaa agtggtctgg cataaccgtc
    14521 ctttcgaagc catcattcag gaagtgatca gcggcgggca cgatttggtg ctaaaaatgg
    14581 cgcaccaaca tgaccgtctg gaagcggtga tttttacgcc aacggactgg catctgttac
    14641 gcaaatgccc aagcccggtg tggatggtga aagaccagcc gtggccggaa ggaggtaagg
    14701 cgctggtggc ggtgaatctc gccagtgaag agccgtatca taatgcgctc aatgaaaaac
    14761 tggtcaaaga gacgatcgaa ctggcagaac aagtcaacca taccgaagtt catctggttg
    14821 gcgcttaccc agtaacgcca attaatatcg cgattgaact gccggaattt gagccgagcg
    14881 tttataacga tgccattcgt gggcaacatt tgctggcaat gaaagccctg cggcagaaat
    14941 tcggcattaa tgaaaacatg acgcacgtag aaaaaggtct gcccgaagag gttattcctg
    15001 atttggcgga gcacttacag gcggggattg tggttctggg cacggtagga cgcaccggta
    15061 tttcagcagc attcctcggc aacacggcgg aacaggtgat tgatcatctt cgctgcgatc
    15121 tgttggtcat taaacctgac cagtatcaga cacccgttga actggatgac gaagaagacg
    15181 attaacgact cttcaataac tgacaaggcc cgagttatcg ggcctatttt ttacttactg
    15241 ctcttcgccg ccaaggaaat aaattcccaa cgggattgcc agcaacacag taaagaccag
    15301 gctataaaca aaaatcatcg atgactgaat cacatacatt gatgtcgtcc actcagacag
    15361 cggaatattg tactgttcta taacgccgcc gatagtcgcg cgagtcacaa ccgacgccgc
    15421 aataatgaca aaccgccaac aaaccaaaga gaaatttctt ccctttcgct gacttcagtt
    15481 tcgccataat catgatgtaa tccttgtgca gacaaatttc ttgttaccta aacgtaacaa
    15541 taccatgaca tttcaccgtt gtctgctctg aaaacctcac ctcttagctg gatttacaat
    15601 caacgcattg attagt
//
LOCUS       DAJVUP010000097        15612 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.097, whole genome shotgun sequence.
ACCESSION   DAJVUP010000097 DAJVUP010000000
VERSION     DAJVUP010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15612
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.097"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..243)
                     /locus_tag="OQQ75_002717"
     CDS             complement(<1..243)
                     /locus_tag="OQQ75_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000100290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1976982.1"
                     /translation="MSSWLAMLQDAAEMFVFLAVELSLLFIVISAGVSLIRQKVPDHK
                     IQQMMGARKGRGYLLAALLGAVTPFCSCSTIPMLRGL"
     gene            350..646
                     /locus_tag="OQQ75_002718"
     CDS             350..646
                     /locus_tag="OQQ75_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1976983.1"
                     /translation="MQLEEVAKALKELGHPTRLFIFKHLVKAGEQGLPVGELQKQLGI
                     PGSTLSHHISALVSVGLVKKNRESRTLMCVSQYAMLEAIIEFLREECCVNSKIA"
     gene            complement(780..1205)
                     /gene="arsC"
                     /locus_tag="OQQ75_002719"
     CDS             complement(780..1205)
                     /gene="arsC"
                     /locus_tag="OQQ75_002719"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-dependent arsenate reductase"
                     /protein_id="HCS1976984.1"
                     /translation="MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL
                     VKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLG
                     TRLCRPSEVVLEILPDAQKGAFSKEDGEKVVDEAGKRLK"
     gene            complement(1218..2507)
                     /gene="arsB"
                     /locus_tag="OQQ75_002720"
     CDS             complement(1218..2507)
                     /gene="arsB"
                     /locus_tag="OQQ75_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite:H(+) antiporter ArsB"
                     /protein_id="HCS1976985.1"
                     /translation="MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPG
                     DIPVVWNIVWNATAAFIAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLG
                     AAVAALFANDGAALILTPIVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLV
                     NIVSADFFGLGFREYASVMVPVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAI
                     KDPATFKTGWVVLLLLLVGFFVLEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLR
                     GAPWQIVIFSLGMYLVVYGLRNAGLTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSI
                     MNNMPTVLVGALSIDGSTASGVIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLSQ
                     KNMTISWGYYFRTGIIMTLPVLFVTLAALALRLSFTL"
     gene            complement(2562..2915)
                     /gene="arsR"
                     /locus_tag="OQQ75_002721"
     CDS             complement(2562..2915)
                     /gene="arsR"
                     /locus_tag="OQQ75_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="As(III)-sensing metalloregulatory
                     transcriptional repressor ArsR"
                     /protein_id="HCS1976986.1"
                     /translation="MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQ
                     PKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKIQAIVRN
                     LARQNCSADSKNICS"
     gene            3654..3737
                     /locus_tag="OQQ75_002722"
     CDS             3654..3737
                     /locus_tag="OQQ75_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Damage inducible protein"
                     /protein_id="HCS1976987.1"
                     /translation="MIDKAIIVLGALIALLELIRFLLQLLN"
     gene            complement(3791..5143)
                     /gene="gorA"
                     /locus_tag="OQQ75_002723"
     CDS             complement(3791..5143)
                     /gene="gorA"
                     /locus_tag="OQQ75_002723"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HCS1976988.1"
                     /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN
                     VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENV
                     LGKNNVDVIKGFARFVDAKMLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF
                     FALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVM
                     NAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAG
                     VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSEHLFNNKPDEHL
                     DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK
                     LVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR
                     "
     gene            complement(5215..6057)
                     /gene="rlmJ"
                     /locus_tag="OQQ75_002724"
     CDS             complement(5215..6057)
                     /gene="rlmJ"
                     /locus_tag="OQQ75_002724"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase"
                     /protein_id="HCS1976989.1"
                     /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAG
                     AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPL
                     IARQLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGL
                     ILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMIHDLEATGIRK
                     ILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSW
                     IVPE"
     gene            6260..8302
                     /gene="prlC"
                     /locus_tag="OQQ75_002725"
     CDS             6260..8302
                     /gene="prlC"
                     /locus_tag="OQQ75_002725"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HCS1976990.1"
                     /translation="MTNPLLTPFELPPFSKILPEHVVPAVTQALNDCRENVERVVAQG
                     APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ
                     HEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS
                     ELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPS
                     YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFE
                     NYAFKSLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVDELQPWDI
                     AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDVDVWHPDVR
                     FFELYDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVAYLTCNFNR
                     PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW
                     CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFR
                     PDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA
                     FSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFKRFRGREPQLDAMLEHYGIKG"
     gene            8310..9062
                     /gene="rsmJ"
                     /locus_tag="OQQ75_002726"
     CDS             8310..9062
                     /gene="rsmJ"
                     /locus_tag="OQQ75_002726"
                     /EC_number="2.1.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709277.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1516)-N(2))-methyltransferase
                     RsmJ"
                     /protein_id="HCS1976991.1"
                     /translation="MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLEL
                     RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD
                     AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD
                     ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVK
                     RPDYAPPLANVTTPNAVVTKGHRFDIYAGTPV"
     gene            complement(9111..10580)
                     /gene="dtpB"
                     /locus_tag="OQQ75_002727"
     CDS             complement(9111..10580)
                     /gene="dtpB"
                     /locus_tag="OQQ75_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpB"
                     /protein_id="HCS1976992.1"
                     /translation="MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQ
                     LGFSQEQAFVTFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSL
                     LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIAL
                     SLAPVIADRFGYSVTYNLCGAGLIIALLVYIACRGMVKDIGSEPDFKPMSFSKLLYVL
                     LGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLML
                     EAVVFYILYAQMPTSLNFFAINNVHHEILGFSINSVSFQALNPFWVVLASPILAGIYT
                     HLGNKGKDLSMPMKFTLGMFMCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG
                     ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLET
                     LPVYTNVFGKIGLVTLGVAVVMLLMVPWLKRMIATPESH"
     gene            complement(10898..11332)
                     /gene="uspA"
                     /locus_tag="OQQ75_002728"
     CDS             complement(10898..11332)
                     /gene="uspA"
                     /locus_tag="OQQ75_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HCS1976993.1"
                     /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS
                     DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY
                     DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE"
     gene            11723..12058
                     /gene="uspB"
                     /locus_tag="OQQ75_002729"
     CDS             11723..12058
                     /gene="uspB"
                     /locus_tag="OQQ75_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="HCS1976994.1"
                     /translation="MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYV
                     DGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVV
                     SLIALMIWH"
     gene            complement(12301..13800)
                     /gene="pitA"
                     /locus_tag="OQQ75_002730"
     CDS             complement(12301..13800)
                     /gene="pitA"
                     /locus_tag="OQQ75_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter PitA"
                     /protein_id="HCS1976995.1"
                     /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY
                     TRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLL
                     AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLI
                     VSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA
                     IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQ
                     HPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSL
                     DQRSQMRRIMLCVSDTIDKVVKIPGVSADDQRLLKKLKSDMLSTIEYAPVWIIMAVAL
                     ALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVL
                     SSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWLSLQFL"
     gene            14032..15234
                     /locus_tag="OQQ75_002731"
     CDS             14032..15234
                     /locus_tag="OQQ75_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HCS1976996.1"
                     /translation="MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILM
                     SGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF
                     CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLELNGMTVGCEKLVIATG
                     GLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITA
                     ENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPN
                     QSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGY
                     RTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ
                     DLIAAKSS"
     gene            complement(15549..>15612)
                     /locus_tag="OQQ75_002732"
     CDS             complement(15549..>15612)
                     /locus_tag="OQQ75_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2776 family protein"
                     /protein_id="HCS1976997.1"
                     /translation="AVCFTLFSIVSILEAGSAKK"
BASE COUNT         3943 a         3992 c         4086 g         3591 t
ORIGIN      
        1 caatccacgt aacatgggta ttgtcgagca actacagaac ggggtaacgg ctcccaacag
       61 agcagccagg agatagcctc tcccttttct ggcccccatc atctgctgga ttttatggtc
      121 tggcaccttt tgtcttatca ggctgacacc ggcactaatc actataaaca gcaacgaaag
      181 ctcgacggcg agaaacacaa acatctctgc ggcatcttgc agcatcgcaa gccaactact
      241 catacgtaac ctcattggat aaatctatat ttccagaata atcgaaatga aattcagatc
      301 aagatatttc tggtattatc gaaatatcaa ccagacagag gggtgtcata tgcagttgga
      361 agaagtcgct aaagcgctga aagagctagg tcacccgacc cgtttgttca tatttaaaca
      421 tcttgtcaaa gccggggaac aagggttgcc ggtcggtgag ttgcaaaagc agcttgggat
      481 acctggctcc acactcagcc accatatatc agcactggta tcggtaggac tggtcaaaaa
      541 aaaccgtgag agtcggacgc tgatgtgtgt ttcgcaatac gcaatgctgg aagcgataat
      601 tgaattctta cgcgaggagt gctgcgtaaa tagcaaaatt gcctgatgcg ctacgctcta
      661 catatttcat gccatatatt gaatttgcac ggttttgtag gtcggataag acgcgttagc
      721 gtcgcatccg acataaacaa agcgcacttt accaactatc ggcagtggat atcgccgctt
      781 tatttcaggc gcttacccgc ttcatcaacc actttctcgc catcttcctt ggagaatgcg
      841 cctttttgcg catctggcag aatttccagc accacttctg aagggcggca caggcgagtt
      901 cccagcggcg tcaccacaat cgggcgatta atcagaatcg ggtgctgaag cataaagtcg
      961 attaaccgat cgtcagtaaa tttatcttcc gcaaggccca gctcctcata cggttcgacg
     1021 tttttacgca gcagcgcgcg tacggaaatc cccatatcgg caatgagttt gaccagttca
     1081 tcgcgcgttg gcggagtttc cagataatgg ataatggtcg gttctgtgcc gctgttgcgg
     1141 atcatctcca gcgtattacg cgacgtgccg caggccgggt tgtgataaat ggtaatgttg
     1201 ctcatatcag tatctcatta caaagtgaaa gagagacgta gcgccagcgc agccagcgtc
     1261 acaaacagca caggcagggt catgataatc cctgtacgga agtaatatcc ccagctgata
     1321 gtcatattct tctgcgaaag tacgtgcagc cagagtagtg tagccaggct accaattggg
     1381 gtaattttcg gtcccaaatc gcagccaatc acattggcat aaaccatcgc ttctttgata
     1441 acgccagatg ccgtgctgcc atcaatggac aacgcgccaa ccagtaccgt cggcatattg
     1501 ttcataatag aagagaggaa ggcggtgagg aatccggtgc cgagcgtcgc ggcccacagg
     1561 ccgttatccg ccagcacgtt gagtacgcca gaaagatatt ccgttaatcc ggcattgcgc
     1621 aggccataaa ccaccagata catgccgagc gagaagatga caatttgcca gggggcaccg
     1681 cgcaggactt tacccgtatt aatcgcatga ccgcgtttag cgacgacaaa taatatcagc
     1741 gcgcccacag ctgcaatggc gctcaccgga atgccgagcg gttccaggac gaaaaatccc
     1801 accagcagaa gcagtaaaac aacccagcca gttttgaacg tagcaggatc tttgatcgct
     1861 tctgcgggag atttcagcag cgccatatcg tagttctgcg gaatatcttt gcgaaaatag
     1921 agatgtagca tcaccagcgt ggcaacaatc gcggcgatat ccaccggcac catcaccgag
     1981 gcgtattcgc gaaagccgag gccaaagaaa tcagcggaaa cgatattcac caggttggag
     2041 acaataagcg gcaggctggc ggtatcggca atgaatccgg ccgccatcac gaacgccagc
     2101 gtcgtgcctt tactgaatcc taaagccagc agcatggcga tgacaatcgg cgtcaaaata
     2161 agcgctgcgc catcattggc aaacagggcg gcaacggcag caccgagcag gacaatccag
     2221 gtaaacagca agcgaccacg accattaccc cagcgtgaga cgtgcagcgc cgcccattca
     2281 aaaaagccgg actcatccag cagcaggctg atgataatga cggcgataaa cgcagccgtc
     2341 gcgttccaga cgatattcca caccaccgga atatcacccg gatggaccac gcccgtaact
     2401 aacgccagta ctgcgccgag cgttgcactc cagccgatgc ctaaaccttt cggctgccag
     2461 ataaccaata caatggtcag gacaaagata gcgcctgcca gtaacataat gcctcctgga
     2521 taaaacacat gcgaaaatac atatgtgttt agctaaattt tttaactgca aatgttctta
     2581 ctgtctgcgg aacagttttg tcgagccagg ttgcggacaa ttgcctgaat cttttcctgt
     2641 tcacatcgcc aggcttcatc aattattttc gccgcccatg ctggaatatg cggcgataag
     2701 cggtaatgaa cccatttacc ttgcttgcgg tccagcaata gcccgctttc acgcagcaat
     2761 gccaggtggc gggagatctt gggctgcgac tggtcgagag cagtgcagag atcgcagacg
     2821 cataactctc ccagttcgct gagcagtaaa acgatgccca gacgggtttc atcagcaaga
     2881 attttgaaca attggatggg taacagaaat gacatattgc gctcctgatt gttgcaggta
     2941 gtgtctctct tcgaagcgga taagtcaaaa acatatatga tttaacgaat gtgtaagtgc
     3001 agaggaaggt aataggtgtg aattttgagt tggctattca tttgaaagga ggtctgaatc
     3061 aggacgtaaa aaaaccgact ttgcgtcggt tttttacttt ccagccctga gttggtggct
     3121 ctggctggag tgagagagtt cttatctaac agctcaatac tattagccag tggctaacat
     3181 tgcaagaatt agcgatttct tcagctggcg gagggagcac ttcggtatat atcgcagtga
     3241 cgatttatat actttcactg ggtcatcgtc atattaagcc ttgtccgaat ccggatgtaa
     3301 aaaaccgact ttgcgtcggt tttttacttt ccagccctga gttggtggct ctgactggag
     3361 tgagatagcc atcatctaac gcatcaatgc taataccata ctgaaactat tgcaaggacg
     3421 tgctggtttt ataacctgca tgtactgtat gattatccag ttagctctga ggcattttca
     3481 ctctggcaat gcgcataaac gctttcaaag tcctggtcag aagtacgggt ggtgccgtta
     3541 actgatgctc tggccggagt gagagagttc ttatctaaca atgagacatg cgccgtgaca
     3601 ggcagtggat gagtaagcgg atgcattctc actccatcgc atggagaaaa cgggtgattg
     3661 ataaagcaat catcgttcta ggggcgttaa ttgcgctgct ggaactgatc cgctttctgc
     3721 ttcagcttct gaactgatag cggaaacgta attaagggct aagagcacac tactcttagc
     3781 cctttaacat ttaacgcatt gtcacgaact cttctgccgc cgttgggtga atggcgacgg
     3841 tattgtcgaa gtcttttttg gttgccccca tcttcagcgc caccgcgaag ccctgcaaca
     3901 tttcgtccat accaaagcca atgccgtgaa taccgacaat cttctcttcc gatccaacgc
     3961 acaccagctt catgcggcac ggctggcggt gagtggtgac ggcggtatac atcgcggtga
     4021 aagaggattt atacactttc acctgatcgt cgccatactg ctcgcgcgcc tgcggttccg
     4081 ttaaaccaac agtaccaatc ggcggatggc tgaagaccac ggtcggaatg ttgctgtaat
     4141 ccagatgctc atccggcttg ttattaaaca ggtgttcaga gagacggcga cccgctgcaa
     4201 ctgccaccgg tgtcagctcc actgcacccg tgttatcgcc caccgcgtaa ataccttcaa
     4261 tgttggtgtt ttgatattta tcgacgacga tatagccttt ttcgttggtt ttaacgccag
     4321 cggcttcgag gttgatgttg tcattggcag gctcgcgacc aatcgcccaa atcaggcaat
     4381 ccaccgtttc actgcgacca tcttccagct ccagcgtcag gctaccatcg gcatttttca
     4441 ctaccgcttt cgggatggcg ttggtgtgca gctgcgggcc ttcggcgttc atcacttcga
     4501 ccagcgtttc ggaaatcatc gggtcgaagc tgcgcagcgg cgcatgttta cgcacaaaca
     4561 gatgcgtttt cgcgccgagg ccgttaatca cgcccgccag ctcaacggcg atgtaacccg
     4621 cgccaacaac cgccacgcgc tctggcaaag caggaagggc gaagaagcca tcagaatcaa
     4681 taccgtattc cacgcccgga atatccgggt ggctcggacg accgcctgtg gcgatcagaa
     4741 tatgatcggc cgtgatggtt tcgccgttta cctccagcat tttggcatca acgaagcggg
     4801 caaagccttt gattacatca acgttatttt taccgagcac gttttcatag gaagtatgaa
     4861 tacggtcgat ataggcggta cggctggcga tcaacgtttc ccagttgaac ttgttgatgg
     4921 tggtatcgaa accataatca gggccgtaca tatggatcgc ttcacggatt tgcgccgcgt
     4981 gccacatcac ttttttcggc acgcagccga cgttcacgca ggtgccgccc agctctttgg
     5041 cttcaatcag tgcgcatttc tggccgtaca tagccgcgcg gttgatggag gctataccgc
     5101 cgctgccgcc gccgatggcg atgtaatcat agtgtttagt catgacagag tgtccttatc
     5161 gttgattacc gcgattgtag cgcgagacgt aataggtgcc agcaatggct gcaattactc
     5221 cggcacgatc cagcttacgg tggcgtgccc ggtgcctgcc ggaaccagtt tgctgtgcag
     5281 ccacggcagc acgttattca tctgctgttc cagtttccac ggcgggttaa tcacaatcat
     5341 gccggaagcg gtcatgccac ggcgatcgct gtctggcagt accgccagtt caatttgcag
     5401 aattttgcga ataccggtcg cttccagatc gtggatcatg cgcttaattt gctgacgcag
     5461 caccaccgga taccacagtg cgtaagtacc agtggcgaaa cgtttgtaac cttctgctat
     5521 cccgctgacc accgcctgat agtcggtttt catttcatac ggcgggtcga taaggattaa
     5581 accacggcgg gaaaccggcg gcagtttggc cttaagctgc tggaaaccat cggctttttc
     5641 gacgcgcgca cggctgtctt tctgaaattc agaacgcagc aacgggtaat cgctcgggtg
     5701 cagttcggtc agttgcaggc tgtcttgttc gcgcagtagc tggcgagcaa tcaatggcga
     5761 accggggtag taacgcaact gaccgctacg gttgaagtgt tttaccacat tgatgtacgc
     5821 ctccagttct gcgggcaaat cgtcctgctg ccagatacgg gcgatgcctt cgagatattc
     5881 gccggtacgc tcggcatgtt cgctgcctaa ctgataacgc ccggcccctg cgtgggtgtc
     5941 gagatagaga aacggtttat ctttctcttt cagcgactcg atgatcaggc tctgaacggt
     6001 atgtttaagg acgtcggcgt ggttgccagc gtgaaagctg tggcgataac tgagcatggg
     6061 taaaggtgtt ccggtaagta aaaatcggcc cgtattcggg gcgcacaaaa gcgtatcagg
     6121 acagtatacc gaaaagaggc cgccgccgcg aaagcgtaac gtttctcatt gaaattcact
     6181 acacttaacc ccatgctaca cacattatgt aaagcgcctg ttgagcgctt ccttaacctc
     6241 tttaaccagg actgcgcgaa tgacgaatcc gttactgact ccctttgaat tgcctccgtt
     6301 ttctaaaatt ctcccggaac atgtcgttcc agccgtgact caggcgctga acgattgccg
     6361 cgaaaatgtg gagcgcgtag tagcgcaagg ggcaccgtac acctgggaaa atctctgcca
     6421 gccgttggcg gaagtggacg atgtgttggg gcgtatcttc tccccggtca gccacctgaa
     6481 ctcggtgaaa aatagcccgg aactgcgtga agcctacgag caaaccctgc cgctgctgtc
     6541 ggaatacagc acctgggtag ggcaacatga agggctgtat aaagcgtacc gcgacctgcg
     6601 cgatggcgat cattacgcca cgctgaacac ggcgcagaag aaagcggttg ataacgccct
     6661 gcgtgatttt gaactctctg gcataggtct gccgaaagag aaacagcagc gttacggcga
     6721 aattgcgacc cgtctttctg aactgggcaa ccagtacagc aacaacgtcc tcgatgcgac
     6781 aatgggctgg accaaactcg ttaccgacga agcggagctg gcggggatgc ctgaaagcgc
     6841 gctggctgcg gcaaaagccc aggccgaagc gaaagagctg gaaggctacc tgctgacgct
     6901 ggatatccca agctacctgc cggtaatgac ctactgcgac aaccaggcct tgcgtgaaga
     6961 gatgtatcgc gcttacagca cccgcgcctc cgatcaaggc ccgaacgccg gtaaatggga
     7021 taacagcaag gtgatggaag agatcctcgc tctgcgtcac gaactggcgc aactgctggg
     7081 ctttgaaaac tacgccttta aatcccttgc cactaaaatg gcagaaaacc cgcagcaggt
     7141 gctggatttc ttaaccgatc tggcaaaacg cgcgcgtccg caaggcgaaa aagagctggc
     7201 acaactgcgc gccttcgcca aagcggaatt tggcgtcgat gagttgcagc cgtgggatat
     7261 cgcgtactac agcgaaaaac aaaaacagca cctctacagc atcagtgacg aacagctgcg
     7321 tccgtacttc ccggaaaaca aagcggttaa cggcctgttt gaagtggtga aacgtattta
     7381 cggcatcacc gctaaagagc gtaaagatgt tgatgtctgg catccggatg tacgtttctt
     7441 cgaactgtat gacgagaaca acgaactgcg cggcagcttc tacctcgatc tgtatgcccg
     7501 tgaaaacaag cgcggcgggg cgtggatgga tgactgcgta ggccagatgc gtaaagctga
     7561 cggttctctg caaaaaccgg tcgcgtattt gacttgtaac ttcaaccgcc cggtaaatgg
     7621 taaaccggcg ctgttcactc acgacgaagt gatcaccctg ttccacgagt tcggtcacgg
     7681 cctgcaccat atgctgaccc gcatcgaaac cgctggtgtt tccggtatca gcggtgtgcc
     7741 gtgggatgcg gtcgaactgc cgagtcagtt tatggaaaac tggtgctggg agccggaggc
     7801 gctggcgttt atctctggtc actatgaaac cggcgaaccg ctgccgaaag agttgctgga
     7861 taaaatgctg gcggcgaaga actaccaggc ggcgctgttt attctgcgcc agctggagtt
     7921 cggcctgttc gatttccgcc tccatgccga gttccgcccg gatcagggtg cgaaaatcct
     7981 cgaaactctg gcagaaatca agaaactggt tgccgtagta ccgtctccat cctggggccg
     8041 tttcccgcac gctttcagcc atattttcgc cggtggttat gccgcaggtt actacagcta
     8101 cctgtgggct gacgtactgg cggcagatgc cttctcgcgc tttgaggaag agggcatttt
     8161 caaccgtgaa accgggcagt cgttcctcga caacattctg agccgtggcg gttcagaaga
     8221 gccgatggat ctgttcaaac gcttccgtgg tcgtgaaccg cagctggatg cgatgctgga
     8281 gcattacggc attaagggct gatcattcag tgaaaatctg cttaattgat gaaacaggcg
     8341 ccggagacgg cgccttatct gttctggcgg cccgctgggg gctggagcac gatgaagaca
     8401 acctgatggc gctggtgtta acgccggaac atctggaatt gcgcaagcgt gatgagccaa
     8461 aacttggcgg catctttgtt gattttgttg gcggagcgat ggcgcaccga cgcaaattcg
     8521 gcggtggtcg cggtgaggcg gtggcgaaag cggtgggcat taaaggcgat tatttgccgg
     8581 atgtggtgga cgccaccgca gggctggggc gcgatgcctt tgtactggct tcagtcggct
     8641 gccgcgtgcg gatgctggag cgtaatccag tggttgccgc gctactcgac gacggcctgg
     8701 cgcgtggtta tgcggatgcg gaaatcggcg gctggttgca ggagcggttg cagttaattc
     8761 acgcctccag cctgacggcg ctaaccgata ttaccccacg cccgcaggtg gtctatctcg
     8821 atccgatgtt cccgcataag cagaaaagcg cgctagtgaa aaaagagatg cgtgtctttc
     8881 agtcgctggt gggaccggat cttgatgccg atggattact ggagcctgca cgcttgctgg
     8941 cgaccaaacg cgtggtggta aagcgcccgg actacgcgcc accgctagcg aatgtcacca
     9001 cgccaaacgc ggttgtgact aaagggcatc gctttgatat ctatgcaggt acgcccgtgt
     9061 aaaagtaaag cagggtagcg ataacgctac cctgctttct gcaagaataa ttaatggctt
     9121 tccggcgtcg caatcatgcg tttcagccac ggcaccatca acagcatcac tactgcaacg
     9181 cccagcgtga ccagaccaat cttaccaaac acgttggtat agacgggcaa cgtctcaagc
     9241 ggatcggtaa tgttgtccgg caccgcggta aatgttgcca catagccgcc cagcaagaac
     9301 gcggcagcct gcgtcaggaa ccacatcccg agaataaagc ccatcaaatg ctgcggcacc
     9361 agggcagcaa tcatcgccag gccaagggcg ctaataaaca gttcacctaa gctctggaat
     9421 aagtacacca gcacgataaa ccatggcgat gtcagccctt gtgcatccgc aaaccacatt
     9481 cccgcagctg ccgccgtcaa aaagcccagt gagcacataa acatgccgag agtaaatttc
     9541 atcggcatcg agaggtcttt gcctttgtta cccagatgcg tgtaaatgcc tgccagtatt
     9601 gggctggcga gtaccaccca gaacgggtta agcgcctgga agctgaccga gttgatggaa
     9661 aaaccgagaa tttcatgatg cacgttgttg atggcaaaga agttcagcga tgttggcatc
     9721 tgggcgtaga gaatgtaaaa caccaccgct tcgagcatca ggacaaaggc gacaaacatt
     9781 ttattgcgcc cggttttatc cagcttgaat gcctgacgaa agaagatgat ggtgacgacg
     9841 atggagagaa caatcagcac cagattggcg acttctacgt tgtgcatcag ccatgcacat
     9901 acgaagatca tcaccacgct gccaagtaat acgtacaaca gtttgctgaa gctcatcggc
     9961 ttgaagtcgg gttcagaacc aatgtctttc accattccac gacaggcgat gtaaaccagt
    10021 aatgcgataa ttaaccccgc cccgcacagg ttgtaggtga ctgaataacc gaatctatca
    10081 gcgatcacag gggccagcga taacgctatc aacgagccga tattgatcga catatagaac
    10141 agggtgaatg cgccatcaag ccgcggatct ttcggcggat agcacttcga aagcaagctg
    10201 gctgggttag ctttaaacag gccgttaccg acagcgatag tccccagggc gatgaaaatc
    10261 aggtcaggct taagtagcga catgccggtc atgaagtagc caatcgccag cacaagtgct
    10321 ccgagaacaa tggtgcgttt ggtccccagc aggtggtcgc cgacatagcc gccaatggaa
    10381 atgaggccat agaccagcgc agcaaaagca ccaaaagtga caaaagcctg ctcttgcgag
    10441 aatccaagct gtttaacgaa gaaaaccgcc agtacgccct gcacgccgta gtagccgaat
    10501 cgctcccata actcgacaaa aaagatcatg aaaaatgggc gaggttgctg cagcatcccc
    10561 atgggtgttg ttgtattcat atttattaac cttccaatac catcctgaaa agtatgaacg
    10621 cgtaagggat aacgcgcgaa aaagtttaca tctgtcagag attcttaata ttgatgcggt
    10681 gaatggatta atacactatt acaacagaaa ataaccagct aatcacacta atgatggaaa
    10741 atatgatggt gttaaatgtt gtattggcag gagattttga ttgcgtacgc agatcgtagg
    10801 ccagataagg ggtttacgct gcatcaggta acaaggcgcg ccaaaaagca aaacgcccgc
    10861 atatgcgggc gttcaggaac acgtcgtgga gggaagatta ttcttcttcg tcgcgcagcg
    10921 gaacaatcag catatcaacg tgaacggtgt tgatcagctg acgtgcggaa gacatcagtt
    10981 tgctccagaa gtcctggtgg tgaccacaaa ccaccagatc catatcgtat ttcttgattg
    11041 catcgaccag aacctggccc aggtcgccgc tgccgctcag ggtttcagtg attgggtagc
    11101 ctgcattagt ggaaagctcg gtcagcgcat gatgtgtctc ttcagagatg cgtttctgca
    11161 tatcacccag attcacatca ataagcccgg tgtataggtc agagtagttt acatctacgt
    11221 ggatcagaga aactttcgca ttgtaggggc gagccataga gactgctttc tctaccagaa
    11281 ctttgctttc cggggagaga tcgaccgcga tgagaatgtg tttataagcc atagtgttac
    11341 tccttccata aagttgtcga tgactggcca gctagcgttt cttgtgccgt tacgtcaccc
    11401 gcgtcctgcg aactacgtgc gcggggctaa cccagccgta aagattcagt gttaagacca
    11461 tccttacctt atagcgaccc ggatgatccg tcaatccgcc ttgcttaccc gttagataaa
    11521 caaattttcg acatgaatat attgatagtg gttaaccttc tggaaaaaaa acaacctgat
    11581 ctcctacact atctatagag ccgctcggat gttggtcacc acaaaagcgg tttctccagg
    11641 acctggtgtt aactgattgg cagcgtatcg ggagcggtag ccccggggtg gaactccgcg
    11701 ggcaggtcgc cggggaggag gtatgataag caccgtcgca ttattttggg ctttatgtgt
    11761 cgtttgcatt gttaacatgg cgcgctattt ctcatcacta cgcgcgttgt tagtggtact
    11821 gcgtaactgc gatccattgc tctatcaata tgttgatgga gggggctttt ttacctcaca
    11881 tggccaaccc aacaaacagg tgcgtctcgt ttggtatatc tatgcccaac gttatcgcga
    11941 tcatcacgat gatgagttta ttcgccgctg tgagcgggtg cgtcggcagt ttattctgac
    12001 tagcgcattg tgtggtctgg tggtggtcag cctgattgca ttgatgattt ggcattaagc
    12061 acttcagcaa taataacgca taaaaaaagc tggccagtaa actgacccgc tcgagactga
    12121 ttacaaacgc aaaattgcct gatgcgctac gcttatcagg cctgcataat ctctgcaatc
    12181 tattgaattt gctgtttttg taggccgaat aaggcgttca cgccgcatcc ggcatgaaca
    12241 aagcgcacta tgtcacaatc tgaagcgggc cagctgaccc gctcgttttg gtgcgtacga
    12301 ttacaggaac tgcaaggaga gccagtacag cccgccggaa agcagtaccg cagccggaag
    12361 ggtaaacacc caggccatca gaatgctggt cacggtttta cgctgtaagc cgccaccatc
    12421 taccaccatc gtccccgcga cagaagagga gagtacgtga gtagtggaaa ccggcatccc
    12481 ggtataactc gccaggccga tagacactgc cgccgtcatc tgggcagaca tcccctgagc
    12541 gtaggtcatg cctttcttac cgattttctc accgatagtc gttgccacac gacgccagcc
    12601 aatcatcgta ccgataccta acgccagcgc gaccgccatg atgatccaca ccggtgcata
    12661 ctcgatggtg ctaagcatgt cggacttcag tttcttcaac aggcgctgat cgtcagcact
    12721 cacgccaggt atcttcacta ctttgtcgat agtgtcagaa acgcacagca taatgcggcg
    12781 catctggcta cgttgatcaa gcgacagctt gtcgtagctt tccacatcgg tagttaacat
    12841 acctttcagg cggttgagcg cgttaatggt attcgacgga tggcaatgga actccgcggg
    12901 ttgcgttgcg ccagcttccg gagccggtac taactgatca gcaccggtag cctgtttcag
    12961 cagcgcagga tgctgctcaa agtaagcttc gacgttgttg atggcatcac gggtacgggt
    13021 gatttcgtag ccagtggcat tcatattcac cacgaagcct gctggtgcga caccaatcaa
    13081 taccaacata accagaccaa tgcctttctg accatcgttc gcgccgtgcg aaaacgccac
    13141 gccgatagcg gaaaggatca gcgcaatacg cgtccagaac ggcggctttt tcttgccgtc
    13201 tttcttttca cgctccgctg gggtcaggtg gatacgggcg cgtttcttgg tgccgctcca
    13261 gtagcgacgc agcaagaaaa tcagaccgcc agcaaacacc aggccgacaa taggggaaac
    13321 aatcagagaa ccgaaaatac ttaatacttt cgggatattg agtgcatcca ccactgacgt
    13381 cccggtcatc aacgcattgg ttaaaccaat cccgatgatc gcgccaatca gtgtatgaga
    13441 gctggatgca ggtaaaccaa agtaccaggt acccaggttc cagataatcg ccgccagcaa
    13501 catagagaac accatggcaa ggccatgaga cgatcccata ttaagcagca gatccgtcgg
    13561 cagcatatgc acaatggcat aggcaacact cagaccaccc agcaaaacac ccaaaaagtt
    13621 gaacaccgcc gccataacca cggcgagctg agaacgcatc gcgcgggtat agataacggt
    13681 tgccacggcg ttggctgtgt catggaaacc attgatggct tcgtagaaca gcacaaaagc
    13741 cagtgcaagc aataataaca gcccggtatg caaatccagg ccagcaaaca aatgtagcat
    13801 aggacgttac gccattttga ggacatgaac gcggcgcatt atcagtgact ttcgcggcgc
    13861 gggcaaagtg aaatatagac tttttttgat ttgcctcctg tatggatttc actcaaaaaa
    13921 taattatctt atataattca ggcaaatact tccttttagt aatattgatg ctggtgtgac
    13981 cactgaggaa tctttacaat tcacgcccgt tttttctaag aggagcgcaa cgtggaaagg
    14041 tttgatgcca ttattatagg cgctggtgcg gcgggtatgt tctgttctgc gctggcaggt
    14101 caggcaggac gccgggttct gctgatcgat aatggtaaaa aaccagggcg caaaatcctt
    14161 atgtctggcg gtgggcgctg caactttacc aacctttatg tcgaaccagg cgcttatctg
    14221 agccagaatc cgcatttttg taagtctgca ctcgcgcgtt ttacccagtg ggatttcatt
    14281 gatctggtca ataaacacgg catcgcctgg cacgagaaaa cgttaggaca actcttctgc
    14341 gatgactccg cgcagcagat tgtcgacatg ctggtggatg agtgcgagaa gggcaatgta
    14401 accttcagat tgcgtagcga agtgctgagt gtggcgaagg atgaaacagg cttcacgctt
    14461 gaactgaacg gcatgactgt cggttgcgaa aagctggtca tcgcgaccgg tgggctgtca
    14521 atgccggggc tgggcgcatc gccgtttggt tataagattg ccgaacaatt tggcctcaac
    14581 gtgctgccga cccgtgcggg tctggtgcca ttcactctgc ataaaccgtt gctcgaagag
    14641 ttacaggtgc tggcgggcgt ggcggtgcct tccgtgatta ccgctgaaaa cggcaccgtt
    14701 ttccgtgaga acttactctt cacccaccgc ggcttatctg gaccggcggt gttgcagatt
    14761 tccagctact ggcaaccggg tgaatttgtc agtatcaatc tgctaccgga tgtggacctc
    14821 gaaaccttcc tgaatgagca gcgtaacgca catccgaatc agagcctgaa aaacacactg
    14881 gcggttcatc taccgaagcg gttggttgaa cgcttacagc aactcgggca aatcccggat
    14941 gtttcgctaa aacagctcaa cgtgcgtgac caacaggcac tgattagcac attgaccgac
    15001 tggcgcgtac aacccaacgg cactgaaggc tatcgcactg ccgaagtgac gctcggcggc
    15061 gtggacacca acgaactctc ttcacggacg atggaagcgc gcaaagtgcc tgggctgtac
    15121 ttcatcggcg aagtgatgga cgttaccggc tggctggggg gctataactt ccagtgggcg
    15181 tggtcgagtg cgtgggcttg tgcgcaggat ttgattgcag cgaagtcgtc ctgacctgtt
    15241 acctaaagat gaaaattatt agagccgcat taaaaatgag ctaattttga tagtggctat
    15301 cttgtgatta ttttctaatg agcccgtgaa ctgaaaccct ccaggcttaa tataaggtgg
    15361 aaggaaagat gattgaaaac tcacccagtg gccagatctt tataaaatat gaacaggctg
    15421 aaaaagacag taactttgtt gttttttatc cttaaccact atgcattaat gctgcgttat
    15481 ttcatgatgc ctaagaaaaa ccagcgttac gcaaatggtc aacgctggtt ttatccggta
    15541 cgttgcaatt attttttagc agaacctgct tctaatattg aaacgattga gaacaacgta
    15601 aagcataccg ct
//
LOCUS       DAJVUP010000098        15597 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.098, whole genome shotgun sequence.
ACCESSION   DAJVUP010000098 DAJVUP010000000
VERSION     DAJVUP010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15597
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.098"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            294..386
                     /locus_tag="OQQ75_002733"
                     /pseudo
     CDS             294..386
                     /locus_tag="OQQ75_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004120448.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            390..569
                     /locus_tag="OQQ75_002734"
                     /pseudo
     CDS             390..569
                     /locus_tag="OQQ75_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310134.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            903..3182
                     /gene="ydeP"
                     /locus_tag="OQQ75_002735"
     CDS             903..3182
                     /gene="ydeP"
                     /locus_tag="OQQ75_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance putative oxidoreductase YdeP"
                     /protein_id="HCS1976998.1"
                     /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKP
                     EGFDCPGCAWPDPKHTASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE
                     LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA
                     FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN
                     PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY
                     NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW
                     KDIEHISGLSQTQIAELADAYAAADRTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI
                     GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQA
                     ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP
                     VLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS
                     VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF
                     ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK
                     ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD
                     PLSGIPGYKSIPVELEPSN"
     gene            3430..3627
                     /gene="safA"
                     /locus_tag="OQQ75_002736"
     CDS             3430..3627
                     /gene="safA"
                     /locus_tag="OQQ75_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system connector SafA"
                     /protein_id="HCS1976999.1"
                     /translation="MHATTVKNKITQRDNYKEIMSVIVVVLLLTLTLIAIFSAIDQLG
                     ISEMGRIARDLTHFIINSLQD"
     gene            3702..4463
                     /gene="ydeO"
                     /locus_tag="OQQ75_002737"
     CDS             3702..4463
                     /gene="ydeO"
                     /locus_tag="OQQ75_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response transcriptional regulator
                     YdeO"
                     /protein_id="HCS1977000.1"
                     /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY
                     ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN
                     HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCL
                     YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA
                     FRKHFGNSPKRVSKEYRCQSHTGMNTGNTMSALAI"
     gene            4865..6547
                     /locus_tag="OQQ75_002738"
     CDS             4865..6547
                     /locus_tag="OQQ75_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416015.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HCS1977001.1"
                     /translation="MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAF
                     SDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAI
                     EAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGI
                     PLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQ
                     NRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPF
                     MLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQ
                     YDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKL
                     ISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEE
                     NIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYNLTD
                     LQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK"
     gene            6599..7756
                     /locus_tag="OQQ75_002739"
     CDS             6599..7756
                     /locus_tag="OQQ75_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1977002.1"
                     /translation="MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIK
                     QYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEW
                     CSFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVI
                     NNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAY
                     GKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIY
                     ECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRIT
                     KVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN"
     gene            complement(7722..7844)
                     /locus_tag="OQQ75_002740"
     CDS             complement(7722..7844)
                     /locus_tag="OQQ75_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977003.1"
                     /translation="MTKHPTGIYVGCLVKVIRRRLRMELKESVINYSPFVLQHP"
     gene            8059..9744
                     /locus_tag="OQQ75_002741"
     CDS             8059..9744
                     /locus_tag="OQQ75_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HCS1977004.1"
                     /translation="MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILG
                     VVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIR
                     WREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
                     SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRP
                     LNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELRDNFHTIKENWHRLMNRQR
                     LLDYWQNIYSRSLSVLPYFLLLPQFISGKINLGGLMKSRQAFMLVSNNLSWFIYKYDE
                     LAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSP
                     GKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICK
                     ALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWI
                     FLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL"
     gene            9782..12154
                     /locus_tag="OQQ75_002742"
     CDS             9782..12154
                     /locus_tag="OQQ75_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS1977005.1"
                     /translation="MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVN
                     GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY
                     QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
                     RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPD
                     FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVVGRAQYKNVIDTALS
                     KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR
                     TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ
                     KFAVGDVSHQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDN
                     YTLYMADHISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFADQTSMITAGYNRY
                     YGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKNVIARAN
                     YVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQ
                     IVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT
                     HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSW
                     TPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF"
     gene            12211..14994
                     /locus_tag="OQQ75_002743"
     CDS             12211..14994
                     /locus_tag="OQQ75_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS1977006.1"
                     /translation="MRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGLRYMI
                     YPHAQPKDQVNLWLQIHTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETFESMG
                     LRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVI
                     TEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQP
                     NNMTFIVVGDIDSKKALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDKENRV
                     NGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTARSVK
                     IAPDYQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWLKNAV
                     DQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQLRKNQ
                     DAFWEQMVNNELAAKKALSPAAILALEKEYANKKLAAYIFPGRNLSLTVDADPQAEIS
                     SKETLAENLTSLTLSNGARVILAKSAGEEQKLQITAVSNKGDLSFPAQQKSLIALANK
                     AVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLINQRIT
                     HSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIVQFTA
                     ADALAADRQLFSSPADITFVIVGNVSEDKLVALITRYLGSIKHSDSPLAAGKPLTRAT
                     DNASVTVKEQNEPVAQVSQWKRYDSRTPVNLATRMALDAFNVALAKDLRVNIREQASG
                     AYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQELNEYQ
                     QNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVKQYLS
                     HPVNTYTGVLLPK"
     gene            15356..>15597
                     /locus_tag="OQQ75_002744"
     CDS             15356..>15597
                     /locus_tag="OQQ75_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS1977007.1"
                     /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT         4544 a         3394 c         3412 g         4247 t
ORIGIN      
        1 tggacggtta agccgagaat acggtagtaa gtgagatatg gggtttggtc gttgttaatg
       61 agcaaccatg accgccaacg actgggttct cccttggttt atgttggtgc gcataatgta
      121 tattatgtta aatcatatct gagtgatgcg aagtgctttt ctggtagtcg ttattcgttc
      181 agggttccag aacttaagcc tctcctcttt cataattggc ctgtgcatga cggatatagg
      241 ctggctggta tgcagatttg ccgtttgccg catcttccca gcgttgaaga ctcaagctgg
      301 caaaccgcgt gcaaatgagc acgccctctt tccatcaaca cttcaggcag cttgcgggaa
      361 tgagtccact acggtatcag aaatgggaag tgggtgtctc tctgatgcgt aatggaaaaa
      421 tactggctac gggagaaaat gtctccctgg ggacagtaaa taaaagcaaa gtatctctgg
      481 gtttaagcgc aacctatgga caaacaggaa acaaggttgc agccggaacc gtccagtcag
      541 tcattggtgt cacttttatc tatgaataat tgtgattttg atcttagtct atgcgctcca
      601 ttcacgaaaa ttgcgcggat aattattttg tgaaggctat tatcctacac ctgtaagaaa
      661 atccgcgcac aattgaagcc agagtcttat tttttatatt gaaaaatatg ttaatttaaa
      721 cactatgaga gatgatgctt aacttatcgt atttaatcta ttgtttaacg ataatagatt
      781 aaaaatagaa agagagtagt cccctactct tatatatcca tgttggcgat aatccctttg
      841 tatgtactgt gcatcatcgc tattacaaat cctaataatt catttccaca caggataagt
      901 agatgaagaa aaaaattgaa tcctaccagg gtgctgcagg tggttggggt gctgttaaat
      961 ccgtagcgaa tgcagtacgt aagcagatgg atatacgcca ggatgttatt gccatgtttg
     1021 acatgaataa gccagagggc tttgactgtc cgggttgtgc atggccagat cctaagcaca
     1081 ctgcgtcatt cgacatttgt gaaaacggcg caaaagcaat cgcctgggaa gtcacggata
     1141 agcaggtaaa tgcctctttc tttgctgaga atacggttca atcattactt acctggggag
     1201 atcacgagct tgaggctgcg ggacgtctca ctcagccttt gaaatatgat gccgtcagcg
     1261 actgttacaa gccattaagc tggcaacaag ctttcgacga aattggcgca cgccttcaaa
     1321 gctatagtga tcccaatcag gttgaattct atacttcggg ccgcacttcc aatgaagctg
     1381 cctttcttta tcagcttttt gcccgtgaat acgggagcaa taactttccc gactgctcca
     1441 acatgtgcca tgaaccgacc agtgtgggtt tggcagcgag tatcggcgtg ggtaaaggga
     1501 ctgtgttgct ggaagacttt gagaagtgcg atttagtcat ttgcattggg cataaccctg
     1561 gtacaaacca cccccgcatg ctgacttcgt tgcgcgcttt agtgaaacgg ggagcgaaaa
     1621 tgatcgccat caatccttta caggaacgtg gcctggagcg atttaccgca ccgcaaaacc
     1681 cgtttgaaat gctgacgaac tctgagactc agttggccag tgcgtactac aacgtgcgca
     1741 ttggtggcga tatggcgttg ctcaagggga tgatgcgcct gttaattgag cgcgatgatg
     1801 ctgcaagtgc cgcaggtcgg ccctcattgc ttgatgacga atttattcaa acgcataccg
     1861 tcggctttga cgagctacgc cgtgacgttc tcaattccga gtggaaagat atcgaacata
     1921 tttctggact aagtcagaca caaatcgccg aactggctga cgcatatgcc gctgccgatc
     1981 gcaccattat ctgttacgga atggggatca ctcagcacga acatggtacc cagaatgtac
     2041 agcaactggt caatctgctg ttgatgaaag gtaacattgg caagcctggt gcgggtatct
     2101 gcccactacg aggtcactct aatgtacagg gcgaccgaac cgtcggtatc accgagaaac
     2161 cgtctgcaga gtttctggct cgcctgggtg agcgctatgg cttcacccca cctcatgcac
     2221 ctggacatgc tgcaattgcc agcatgcaag caatatgcac ggggcaggct cgagcattga
     2281 tctgcatggg gggcaacttt gcactggcaa tgccagatcg ggaagcgagc gctgtaccgt
     2341 taacgcaatt agatttggcg gtacacgtag ccactaagct taaccgctct catctgctga
     2401 ccgcacggca tagctatatt ctgccggttc tggggcgtag cgagattgac atgcaaaaaa
     2461 gcggtgcgca ggcggtaacc gttgaggatt caatgtcgat gattcatgcc tcgcgtggcg
     2521 tgttaaaacc cgccggtgta atgctgaaat cagagtgtgc agtggtcgcg ggaatcgcgc
     2581 aggcagcact accccagagc gtggtagcct gggagtatct ggtggaagat tatgatcgca
     2641 ttcgcaatga cattgaagct gtgttaccag agttcgccga ctataaccag cgcatccgac
     2701 atcctggagg ttttcacctg ataaatgcag ctgctgaaag gcgctggatg acgccgtcag
     2761 gtaaggctaa tttcattacc agcaaagggc tgttagaaga tccctcttca gcgtttaaca
     2821 gtaagctggt catggcgaca gtacgcagcc acgatcagta caacacgacg atttatggta
     2881 tggatgatcg ctatcgaggg gtattcggtc aacgagatgt ggtctttatg agtgctaaac
     2941 aagctaaaat ttgccgtgta aaaaacggcg aaagagttaa tcttattgcg cttacgccag
     3001 acggtaagcg cagctcacgc cgcatggata gattaaaagt ggtcatttac cctatggctg
     3061 accgctcact ggtgacctat tttccagaat cgaatcacat gctaactctt gataaccacg
     3121 atccattaag tggcattcct ggttataaaa gtattccggt tgaattagaa ccatcaaatt
     3181 aattcgcctc ctcatttctt ctgctgtcat ccgcacagca gaagaatttc tcattgacta
     3241 ttatcgcgca atttgctcac attgatcaaa ttaaaccaca cactataaga tataaacctc
     3301 tgcctacagc tgtaagaaac tccgctcagt actgaagtgc cagtcctatt tcctcttttc
     3361 tccagcctgt tatattaagc atactgatta acaattttta acgttatccg ctaaataaac
     3421 atatttgaaa tgcatgcgac cacagtgaaa aacaaaatca cgcaaagaga caactataaa
     3481 gaaatcatgt ctgtaattgt ggttgtctta ttactgaccc ttacgttgat agccattttt
     3541 tcggcaattg atcagctggg tatttcagaa atgggtcgca ttgcaagaga tcttacacat
     3601 ttcattatca atagtttgca agactgaaaa taaacagcaa attataaata tgaaatgtta
     3661 aaaaagtatc gataaaaact ttattgtttt aaggagataa aatgtcgctc gtttgttctg
     3721 ttatatttat tcatcatgcc ttcaacgcta acattttaga taaagattac gccttctctg
     3781 acggcgagat cctgatggta gataacgctg ttcgtacgca ttttgaacct tatgagcggc
     3841 attttaaaga gatcggattt actgaaaata ccattaaaaa atatctacaa tgcactaaca
     3901 tccagacagt gacggtgcct gttcctgcga agtttttacg tgcttcaaat gtaccgactg
     3961 gattgcttaa tgaaatgatt gcttatctca actcggaaga acgcaatcat cataattttt
     4021 cagaactttt gcttttttct tgcctgtcta tttttgccgc atgcaaaggt ttcattacac
     4081 tattaactaa cggtgtgcta tccgtttccg gaaaagtgag aaatattgtc aacatgaagc
     4141 tggcgcaccc atggaagctg aaagatattt gtgactgcct gtacatcagt gaaagcctgt
     4201 tgaagaaaaa actaaagcaa gagcaaacga cattctcaca gattctatta gatgccagaa
     4261 tgcagcacgc aaaaaatttg atacgcgtag aaggttcagt caataaaatt gccgaacaat
     4321 gtggttatgc cagtacttct tattttattt atgcgttccg caaacatttc ggcaacagtc
     4381 cgaagagagt ttctaaggag taccgttgtc aaagtcacac gggtatgaat acgggcaaca
     4441 cgatgagtgc tttagctatt tgattatttg ctaacgagta gtcaaccacg cacgctacgt
     4501 aagaattata tggggcagcc attccctgcc ccgcgttgtt tttaggcgat atatttattg
     4561 aaataaataa gtgacatcca tcacatattt atgcacttgc ataacctgtt gcatgattat
     4621 ttatgttctc aattcagcat tttgtcagta aaatgcaata attcattaaa tatcaataaa
     4681 ttagttgttt atcggcgaga aattacttaa tagaacagaa agtaatgtca acgctttatg
     4741 gactgttatt tccctttttt tagctaaatc tgctatctct ttatgtgact aacttcactt
     4801 acatccactt atttctcttc gtaaaattac ttcggaatta agtacaataa gaagaggaac
     4861 atttatgaag tctgcattaa agaaaagtgt cgtaagtacc tcgatatctt tgatactggc
     4921 atctggtatg gctgcatttg ctgctcatgc ggcagatgat gtaaagctga aagcaaccaa
     4981 aacaaacgtt gctttctcag actttacgcc gactgaatac agtaccaaag gaaagccaaa
     5041 tattatcgta ctaaccatgg atgatcttgg ttatggacaa cttccttttg ataagggatc
     5101 ttttgaccca aaaacaatgg aaaatcgtga agttgtcgat acctacaaaa tagggataga
     5161 taaagccatt gaagctgcac aaaaatcaac gccgacgctc ctttcattaa tggatgaagg
     5221 cgtacgtttt actaacggct atgtggcaca cggtgtttcc ggcccctccc gtgccgcaat
     5281 aatgaccggt cgagctcccg cccgctttgg tgtctattcc aataccgatg ctcaggatgg
     5341 tattccgcta acagaaactt tcttgcctga attattccag aatcatggtt attacactgc
     5401 agcagtaggt aaatggcact tgtcaaaaat cagtaatgtg ccggtaccgg aagataaaca
     5461 aacgcgtgac tatcatgaca acttcaccac attttctgcg gaagaatggc aacctcaaaa
     5521 ccgtggcttt gattacttta tgggattcca cgctgcagga acggcatatt acaactcccc
     5581 ttcactgttc aaaaatcgtg aacgtgtccc cgcaaaaggt tatatcagcg atcagttaac
     5641 cgatgaggca attggcgttg ttgatcgtgc caaaacactt gaccagcctt ttatgcttta
     5701 cctggcttat aatgctccgc acctgccaaa tgataatcct gcaccggatc aatatcagaa
     5761 gcaatttaat accggtagtc aaacagcaga taactactac gcttccgttt attctgttga
     5821 tcagggtgta aaacgcattc tcgaacaact gaagaaaaac ggacagtatg ataatactat
     5881 tattctcttt acctccgata atggtgcggt tatcgatggt cctctgccgc tgaacggggc
     5941 gcaaaaaggc tataagagtc agacctatcc tggcggtact cacaccccaa tgtttatgtg
     6001 gtggaaagga aaacttcaac ccggtaatta tgacaagctg atttccgcaa tggatttcta
     6061 cccgacagct cttgatgcag ccgatatcag cattccaaaa gaccttaagc tggatggcgt
     6121 ttccttgctg ccctggttgc aagataagaa acaaggcgag ccacataaaa atctgacctg
     6181 gataacctct tattctcact ggtttgacga ggaaaatatt ccattctggg ataattacca
     6241 caaatttgtt cgccatcagt cagacgatta cccgcataac cccaacactg aggacttaag
     6301 ccaattctct tatacggtga gaaataacga ttattcgctt gtctatacag tagaaaacaa
     6361 tcagttaggt ctctacaatc tgacggatct acagcaaaaa gataaccttg ccgccgccaa
     6421 tccgcaggtc gttaaagaga tgcaaggcgt ggtaagagag tttatcgaca gcagccagcc
     6481 accgcttagc gaggtaaatc aggagaagtt taacaatatc aagaaagcac taagcgaagc
     6541 gaaataacta aaccttcatg cggcggaatt ttccgccgcc ttattgagcg agatagcgat
     6601 gcacgttaca gccaagccct ccagttttca atgtaatctc aaatgtgatt actgttttta
     6661 ccttgaaaaa gagtcgcagt ttactcatga aaaatggatg gatgacagca ctctgaaaga
     6721 gttcatcaaa caatatatcg cagcgtctgg caatcaggtc tattttacct ggcaaggcgg
     6781 tgaacccact ctggctggcc tggatttttt ccgtaaagtt attcactatc aacaacgcta
     6841 tgcaggccaa aaacgtattt ttaatgcatt acaaacgaat ggcattttat tgaataacga
     6901 atggtgttcc tttctcaaag aacatgaatt tctggttggt atctcgatcg atggccccca
     6961 ggagttacat gaccgttaca gacgcagtaa ttcaggtaac ggtacttttg caaaagtgat
     7021 agcagccatc gagcgtctga aatcatatca agttgagttt aatacgttaa ccgtcattaa
     7081 taacgttaat gtccattacc ctcttgaggt ttatcatttt ttaaaatcta tcggcagtaa
     7141 acatatgcaa tttatcgaat tgctcgaaac cgggacgccg aatattgatt tcagtggtca
     7201 tagtgagaac acattccgta tcattgattt ttctgtgcct cccacggctt atggcaagtt
     7261 tatgtcaacc atttttatgc aatgggttaa aaacgatgtg ggtgaaattt tcattcgtca
     7321 gtttgaaagc tttgtcagcc gttttttggg gaatgggcat acaagttgta ttttccagga
     7381 gtcctgcaag gataatctgg ttgttgaaag taatggagac atttacgaat gcgaccattt
     7441 tgtctatcca cagtacaaaa ttggaaacat taataaatct gaactcaaaa cgatgaacag
     7501 tgtacaactg acagcgcaaa aaaaacggat ttcagcgaaa tgtcagcaat gtgcatataa
     7561 acctatctgc aatggcggtt gtcctaagca tcgtattact aaagtaaaca atgagactgt
     7621 ttcttatttt tgcgaaggtt ataaaatcct tttttcaacc atggtacctt atatgaacgc
     7681 catggttgag ttagctaaga acagagtacc gctttaccac attatggatg ttgcaaaaca
     7741 aatggagaat aattaataac gctctctttt aactccattc ttagcctcct tcttatgacc
     7801 ttaacaaggc acccgacata aattcctgtc gggtgtttcg tcatcatcat cttcccttgc
     7861 gaaaatcctg gcttacgtgg tatgcgtcag ggcattagca atacccttga ttatcaatag
     7921 cataaccata accataacca taaccactga aaattaaaaa tttctatata tttcatattg
     7981 ttaaatgata cttaaataaa tttcatcagt aaatcattgc catagataat cattggatgg
     8041 cacaatcaat tttcgctaat gataaccatt cccattacgt tttgtatgtt gatagcaaag
     8101 tatctctgtc tgctgaagcc cttttggctg cgtaagaata ataaaacttc agtgttgtta
     8161 atcattatta tcctcgcaat gatccttggc gtggttaaaa ttcaggtctg gttaaacgac
     8221 tggaataatg attttttcaa tgcgctaagc cagaaagaaa ccgataagct ttggcagctt
     8281 gttctttggt tccctgccct gctggggatc tttgtattaa tatccgtaaa caaaacatgg
     8341 ttaattaaac tactgactat tcgctggcgc gaatggttaa cagattacta ccttaatcgc
     8401 tggtttgcag ataaaaacta ctacttcacg cagatctacg gcgagcataa aaatacagat
     8461 aaccctgacc aacgtatcgc tgaagacatt ctcttactga tcagcaaaac gctcagtctt
     8521 tcatttggct tcatccagtc acttagcatg ctgatcacct ttaccgttat tctttggcaa
     8581 agcgcgggta cgctctcatt cactgttggt ggaacagaat ggaatatcca ggggtatatg
     8641 gtctataccg tcgtgctcat tgtgatcggt ggaactttat ttacccataa ggttggtaag
     8701 cgtattcgtc cgcttaatgt ggaaaaacaa cgtagcgaag cgacatttcg aactaatctt
     8761 gtgcagcata ataagcaggc agaactgatt gcgctaagca atgctgagtc tctacaacgc
     8821 caggagttgc gcgacaattt tcataccatt aaagagaact ggcatcgttt aatgaatcgt
     8881 cagcggttgc ttgattactg gcaaaatatt tattcgcgct cgcttagcgt tcttccctac
     8941 tttctgttat tgccgcagtt tattagcggg aagatcaatc tgggcggact gatgaaatcg
     9001 cgccaggcat ttatgctagt atcgaacaat ttaagctggt ttatttataa atatgacgaa
     9061 cttgctgaac tggctgcggt tatcgatcgc ttgtatgagt tccatcaact cactgaacag
     9121 cgccctacga ataagcctaa aaattgccaa catgcggtac aagtggctaa tgcgagtatt
     9181 cgtacgcctg ataataagat catattagag aacttgaact ttcatgtttc gccaggcaaa
     9241 tggctattac tgaaaggcta ctctggtgcg ggaaaaacca cactgcttaa aacattatcc
     9301 cactgctggc cgtggtttaa aggtgatatt ttttctcctg ctgacagttg gtatgtgtca
     9361 caaacaccgt taatcaaaac cggcttactg aaagagatta tttgtaaagc acttcccctg
     9421 cccgtagacg ataaatcgtt gagcgaagta ctgcatcagg ttggtcttgg gaaattggct
     9481 gcgcgtattc atgaccacga tcgctgggga gatattcttt ccagcggcga aaaacaacgt
     9541 atcgccctgg cacgattaat tttacgacgt ccgaaatgga tatttcttga cgaaactacc
     9601 tctcatcttg aggaacaaga ggctatccgc ttactgcgtt tagtgcgtga aaaactaccc
     9661 acaagcggcg tcattatggt tacacatcaa cccggtgtct ggaacctggc cgatgatatt
     9721 tgtgacatta gcgcggtttt ataaaaacaa taaaagccct gctgtacgga gatataaata
     9781 aatgaagcga gttcttattc ctggcgtcat tttatgtggc gctgatgtgg cgcaggccgt
     9841 cgatgacaaa aacatgtaca tgcatttttt tgaagagatg acggtctatg ctcctgtccc
     9901 tgtacccgta aacggcaaca cgcattacac cagtgaaagc atcgagcgtt taccgaccgg
     9961 gaatggcaat atcagcgatc tgctgagaac caaccctgcg gtacgcatgg attcaacgca
    10021 aagtacctcg ttgaaccagg gagatattcg ccctgagaaa atctctattc acggtgcgtc
    10081 gccctaccag aatgcctatt tgattgacgg tattagtgca actaataacc tgaacccagc
    10141 gaatgagtcc gatgccagta gtgcaaccaa tattagcggg atgtcacagg ggtattatct
    10201 tgatgtcagc ttactggaca atgtgacgct ttatgacagt tttgtgccgg ttgaatttgg
    10261 tcgcttcaat ggcggggtaa ttgatgcaaa gatcaaacgc ttcaacgctg atgatagcaa
    10321 ggtgaaattg ggttatcgca ctacgcgttc ggactggtta acatcgcata tcgatgagaa
    10381 taacaagagc gcatttaatc aaggttcttc aggaagtact tatttctctc cagattttaa
    10441 aaagaacttt tataccttgt cgtttaatca ggagctggct gataactttg gcgttaccgc
    10501 cggtttatcg cgccgccagt ctgatatcac ccgcgcggat tatgtttcga atgacggcat
    10561 tgtcgtcggt cgggcacagt ataaaaacgt tatcgatact gcattgagca aatttacctg
    10621 gtttgccagc gaccgcttta cccacgattt aaccttaaaa tataccggct ccagccgtga
    10681 ttataatacc agcaccttcc cgcagtctga tcgcgaaatg ggtaataaat cctatggtct
    10741 tgcatgggat atggatacgc aactcgcatg ggccaaacta cgtaccaccg ttggttggga
    10801 tcatattagt gattataccc gtcacgatca tgacatctgg tacaccgaac tttcatgtac
    10861 atatggtgat attacagggc gttgtacccg tggcggatta ggacacattt cccaggctgt
    10921 agataattac accttcaaaa cacgcctgga ctggcaaaaa ttcgccgtgg gtgatgtttc
    10981 gcatcaaccc tactccggcg cggaatacat ctattccgat gcatggactg aacgccataa
    11041 ccagtctgaa tcctatgtga ttaatgctgc aggaaagaaa actaaccata ccatttacca
    11101 taaaggtaaa ggcagcctag gaattgacaa ctacacgctg tatatggcgg atcacattag
    11161 ctggcggaat gtgtcgttaa tgcccggtgt gcgttatgac tatgacaact atctgtcaaa
    11221 ccacaatatc tccccgcgct ttatgacgga atgggatatt tttgctgatc aaacctcaat
    11281 gattaccgcc ggttataacc gttactatgg cgggaatatt cttgatatgg gattacgtga
    11341 tatccgcaat agctggacgg aatcggtatc aggtaataaa accctgacgc gttatcagaa
    11401 tttgaaaacg ccttataacg atgaactggc aatgggattg cagcaaaaaa tcggtaagaa
    11461 cgttattgca cgcgcaaact atgtttaccg tgaagcgcat gatcaaatca gcaaaagcag
    11521 tcgtaccgac agcgcgacta aaaccaccat tactgaatat aacaacgatg gcaaaaccaa
    11581 aacgcattcg tttaacctca gttttgaact ggccgaaccc ctgcatatcc gccaggtaga
    11641 tattaacccg caaattgtct ttagctatat caagagcaag ggcaacttgt cgttaaacaa
    11701 tggttatgag gagagcaata ccggtgataa ccaggtggtt tataacggta atctggtctc
    11761 ttacgatagc gttccagtgg cagattttaa taacccatta aagatctcct taaacatgga
    11821 tttcacgcat caaccgagcg ggttagtgtg ggcgaatacg ctggcgtggc aagaagcgcg
    11881 taaagctcgc attatccttg gtaagacaaa tgcgcaatac atcagcgaat attcagatta
    11941 caagcagtat gttgacgaaa aactggatag cagcctgacc tgggacaccc gcttgtcctg
    12001 gacgccacaa tttctgaaac aacaaaacct gacgatcagt gccgatattc tcaatgtact
    12061 ggatagcaaa accgctgttg atacaacgaa taccggtgtg gcgacctacg ccagtggccg
    12121 tactttctgg cttgatgtca gcatgaaatt ttaatagttc ggattttact taaccgggta
    12181 aattcgcccg gttttcgcat ggagataatt atgagaaacc tctgtttctt actgacgtta
    12241 gtggcaactc tgttgctccc cgggcggctg attgccgccg ccttaccgca ggatgaaaag
    12301 ttaattaccg ggcaactgga caatggcttg cgatatatga tttatccgca tgctcaacca
    12361 aaggatcagg taaatttatg gctgcaaatt cataccggtt cattgcagga agaagacaat
    12421 gagcgcggcg tggctcattt tgtagaacat atgatgttta acggcacaaa aacatggccg
    12481 ggtaataaag tcatcgaaac atttgagtca atgggcctgc gttttggtcg cgatgttaat
    12541 gcctatacca gctatgacga aacggtgtat caggtgagtt tgccgactac gcagaaacaa
    12601 aatctgcaac aagtgatggc aatcttcagt gaatggagta atgccgcaac ctttgaaaaa
    12661 ctcgaagtag acgctgaacg tggcgtaatt actgaggaat ggcgtgccca tcaggatgcg
    12721 aaatggcgca cctctcaggc gcgccgccct ttcctgctgg ctaatacccg taatttagac
    12781 cgtgaaccta tcggcctgat ggatactgtc gccacggtca caccggcaca attgcgccaa
    12841 ttttatcaac gctggtatca accaaataat atgaccttta tcgtggtcgg cgatatcgac
    12901 agtaaaaaag cgctggcgct gataaaggat aatttaagta agcttccggc taacaaagca
    12961 gctgaaaatc gcgtctggcc gacaaaagcc gaaaaccacc tgcgctttaa tatcattaat
    13021 gataaagaaa accgggtgaa cggcatcgca ctctattatc gcctgccaat ggtacaagtg
    13081 aacgatgagc aaagctttat cgaacaagct gaatggagca tgttagttca gctgttcaat
    13141 caacgtctgc aggaacgcat acagtcgggc gagttgaaga ctatttctgg cggcactgcg
    13201 cgcagcgtta aaattgcacc cgattatcag tcgctgtttt tccgtgtaaa tgcacgagac
    13261 gataatatgc aggatgctgc gaatgcatta atggcagagt tggcaaccat tgatcagcat
    13321 ggtttttctg ctgaagaact cgatgatgtc aaatctaccc gcctcacctg gctgaaaaat
    13381 gcggttgatc agcaagctga acgtgattta cgtatgctga ccagtcgcct ggcatccagc
    13441 tcattaaata atacgccgtt cttgtcgccg gaagagacat atcaactttc gaaacgtctg
    13501 tggcagcaaa ttaccgtgca aagtctggcg gaaaaatggc agcagttaag aaagaaccag
    13561 gacgcatttt gggagcaaat ggtaaacaat gagcttgccg ccaaaaaagc attgtctcct
    13621 gcggctatcc tggcgctgga aaaagagtac gccaacaaaa agctggcggc ttacatcttc
    13681 ccaggcagaa atttatcgtt aacagtagac gctgacccac aggcggaaat tagcagcaaa
    13741 gaaacgctgg ctgagaatct gacatcatta acactttcca atggtgccag ggttattctg
    13801 gcaaaatccg cgggtgaaga gcaaaagcta caaattactg ccgtatcgaa taaaggcgat
    13861 ttaagtttcc ctgcgcagca aaaatcactt atcgcgctgg caaataaagc ggtaagcgga
    13921 agcggcgttg gtgagctctc ctcttccagc ctgaaacgct ggagtgcgga aaattcggta
    13981 accatgagca gtaaagtcag tggcatgaat acgttgctct ccgttagcgc gcggactaat
    14041 aaccctgaac ctggttttca gttgattaac cagcgaatca cccacagcac gattaacgac
    14101 aatatttggg catcgctaca aaatgctcaa attcaggcgt tgaaaacgct cgaccagcgt
    14161 ccagcggaga aattcgccca gcagatgtat gagacgcgct atgctgatga ccgcacgaaa
    14221 ttactgcaag aaaatcagat tgtacagttt actgccgcag atgcgctggc tgccgatcgc
    14281 cagttgtttt catctccagc ggatatcacg tttgtcattg tcggtaatgt ctcagaagac
    14341 aaactcgtgg cgttaattac gcgttactta ggatcaatca aacactctga ttcgccatta
    14401 gccgcaggta aaccattaac tcgcgcgacg gacaacgcat cggttactgt aaaagaacaa
    14461 aatgaacctg tggcacaggt ttcacagtgg aagcgttatg attcccggac acctgttaat
    14521 ctggcgacgc gtatggcgct cgatgctttt aacgtcgcac tggcaaaaga tctacgtgtt
    14581 aatattcgtg aacaggcatc tggagcatac agcgtttctt ctcgcctctc ggttgatcct
    14641 caggccaaag atatcagtca tttgctggct tttacttgtc aaccagaacg acatgatgaa
    14701 ctgttaacgt tagcgaatga agtgatggtt aagcgtctgg ctaaagggat cagtgagcaa
    14761 gaactgaatg aataccagca aaacgttcag cgcagcctcg atatccaaca gcgtagcgtt
    14821 caacaattag cgaacactat tgtaaatagt cttattcaat atgacgatcc tgcagcatgg
    14881 actgagcagg agcaattgtt gaaacaaatg acggtagaga atgttaacac tgccgttaaa
    14941 caatatcttt ctcatccggt aaatacttat accggagtat tattgccaaa ataataacag
    15001 ccccgtcaac acatcgttgg cggggatttt agcaatattc gctattttta tgtaataatt
    15061 ttataaatgc gttcaaaata ataatcaagt actaatagtg atattttaag gtctgatttt
    15121 tacgtgataa ttcaggagac acagaatgcg cataaaaata acagcataaa acaccttacc
    15181 accacccaag aatttcatat tgtattgttt ttcaatgaaa aaacattatt cgcgtaatat
    15241 ctcacgataa ataacattag gattttgtta tttaaacacg agtcctttgc acttgcttac
    15301 tttatcgata aatcctactt ttttaatgcg atccaatcat tttaaggagt ttaaaatgga
    15361 taagaagcaa gtaacggatt taaggtcgga actactcgat tcacgttttg gtgcgaagtc
    15421 tatttccact atcgcagaat caaaacgttt tccgctgcac gaaatgcgcg acgatgtcgc
    15481 attccagatt atcaatgacg aattatatct tgatggcaac gctcgtcaga acctggccac
    15541 tttctgccag acctgggacg acgaaaatgt ccacaaattg atggatttat ccattaa
//
LOCUS       DAJVUP010000099        15313 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.099, whole genome shotgun sequence.
ACCESSION   DAJVUP010000099 DAJVUP010000000
VERSION     DAJVUP010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15313
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.099"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(21..464)
                     /locus_tag="OQQ75_002745"
     CDS             complement(21..464)
                     /locus_tag="OQQ75_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS1977008.1"
                     /translation="MAELQKVDDWLSALLANLEPAARSRMMRQLAQELRRTQQQNIRM
                     QRNPDGSSYEPRRVTARSKKGCIKRQMFTKLRTTKYLKTAASADSASVQFEGRVQRIA
                     RIHHYGLSDRVSRKGIYTIYAKRQLLGFNVQSIELIERMFIKNLT"
     gene            complement(457..888)
                     /locus_tag="OQQ75_002746"
     CDS             complement(457..888)
                     /locus_tag="OQQ75_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977009.1"
                     /translation="MNKPQSLRHALNKAVPYVRNNPDKLHLFVDNGSLVASGASSMSW
                     EYRYTLNVVIEDFSGDQNLLMAPVLLWLRDNQPDAINNPALREKLFTFEVDILRNDVC
                     DISLNLQLTERVLVSTDGSVSNVEAVAEPDEPEEMWTVKRG"
     gene            complement(984..1412)
                     /locus_tag="OQQ75_002747"
     CDS             complement(984..1412)
                     /locus_tag="OQQ75_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HCS1977010.1"
                     /translation="MNRLLLVVLALLLAALGWQTWRLADASQTISTQADELQSKSQAL
                     AKSNSQLISLSILTETNNREQARLYAEAEQTSVLLRQRQRRIEELKRENEDLRRWADT
                     PLPADIIRLRERPALTGGAAYRQWLSASDAVSAGAGSAAH"
     gene            complement(1409..1786)
                     /locus_tag="OQQ75_002748"
     CDS             complement(1409..1786)
                     /locus_tag="OQQ75_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000730949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977011.1"
                     /translation="MKKKLISGLFLMLWMALLIAAMVYPQGIFPVLAASGVWVACLLT
                     WAVIPVALASLIKNGPLWQELRASLLKTITRKENVFISWVIRLLIVVSLAWTGWAITL
                     VFYLLTVIAFWITHNQMAQQVAA"
     gene            complement(1788..2300)
                     /locus_tag="OQQ75_002749"
     CDS             complement(1788..2300)
                     /locus_tag="OQQ75_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001069913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1977012.1"
                     /translation="MNPSIVKRCLVGAVLAIAATLPGFQQLHTSVEGLKLIADYEGCR
                     LQPYQCSAGVWTDGIGNTSGVIPGKTITERQAAEGLISNVLRVERALEKCVKQQPPQK
                     VYDAAVSFAFNVGTGNACSSTLVKLLNQRRWADACRQLPRWVYVKGVFNQGLDNRRAR
                     EMAWCLQGAN"
     gene            complement(2281..2496)
                     /locus_tag="OQQ75_002750"
     CDS             complement(2281..2496)
                     /locus_tag="OQQ75_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977013.1"
                     /translation="MTLERISAFITYCIAVVLAWLGDLSIKDASTLGGLMIGVLMLAI
                     NWYYKHKAYQLLRDGQISREDYESINR"
     gene            complement(2500..2703)
                     /locus_tag="OQQ75_002751"
     CDS             complement(2500..2703)
                     /locus_tag="OQQ75_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS1977014.1"
                     /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLKANPGLAEYGPFLP
                     HGLQVELPDIPTTTTVQTVQLWD"
     gene            complement(2703..3167)
                     /locus_tag="OQQ75_002752"
     CDS             complement(2703..3167)
                     /locus_tag="OQQ75_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS1977015.1"
                     /translation="MKFVAPEQAPEQAEIIRNTPFWPDVDLSEFRSVMRTDGTVTQPR
                     LKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKSERIQHYFNAVYCWAR
                     AMLNERFQDYDATASGAKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI"
     gene            complement(3263..3913)
                     /locus_tag="OQQ75_002753"
     CDS             complement(3263..3913)
                     /locus_tag="OQQ75_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HCS1977016.1"
                     /translation="MSLSPARQHRLRVQAEQAVREGGSVRHASGYDLMLLQLAEDRRR
                     LKGVQSTVKKAEIKVELLPKYAAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGALE
                     IGRHALRHGWVMPLGNRNVQTVLTEEMADAAQSAMLAATGFDADLLLQTLELTDGLDM
                     PDQSRARLHKAIGAVLSESNPASALNHLNHALQLDPRCGVKKDKQQLERRLRNDSR"
     gene            complement(3917..4975)
                     /locus_tag="OQQ75_002754"
     CDS             complement(3917..4975)
                     /locus_tag="OQQ75_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HCS1977017.1"
                     /translation="MKKNTRFAFNAYLQQLARLNGVAVEELSSKFTVEPSVQQTLEDQ
                     IQQSAAFLTLINVTPVTEQSGQLLGLGVGSTIAGTTDTTAKEREPVDPTLMVDVEYKC
                     EQTNFDTVLTYAKLDLWAKFQDFQVRIRDAIVKRQALDRIMIGFNGVKRAKTSNRSEN
                     PLLQDVNKGWLQKIREDAPDHVMGSTTTGGETTPGAVKVGKGGEYANLDAVVMDAVNE
                     LIDVVYQDDDDLVVICGRELLSDKYFPLVNKEQENSEKLAADMIISQKRMGGLQAVRA
                     PFFPPNALLITRLDNLSIYWQEDTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAAL
                     VENIQISDFSAAAAETGA"
     gene            complement(4992..5825)
                     /locus_tag="OQQ75_002755"
     CDS             complement(4992..5825)
                     /locus_tag="OQQ75_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS1977018.1"
                     /translation="MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALIN
                     LEHIKSYLPDSTFNRYGKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKL
                     FTFMEVSPKFADTGKAYLVGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFT
                     AAEETVIELEEVQDDKPSLFARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSAR
                     TEKSLSEQEERLSELETALQAQQTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTN
                     C"
     gene            5968..7734
                     /locus_tag="OQQ75_002756"
     CDS             5968..7734
                     /locus_tag="OQQ75_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HCS1977019.1"
                     /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK
                     KRDKWGDYGPLDQMQLTTAARYCQLIMKEHKEGKDFKEIDLLARQSERHARIGKFNNG
                     GNEADLNPNVANRNKGPRRQPEKNVFTDDQIEKLEKIFHSSMFNYQRHWWEAGKTNRI
                     RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVEVEL
                     KGDPMVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR
                     QTYFSTPSSLTHSAYPFWSGALFNRGRNKADKVDIDLSHSNLAPGRLCADGQYRQIVT
                     VEDAVRGACNLFDLDQLRMEYSPDEYQNLLMCEFVDDLASVFPLSELQACMVDSWEVW
                     TDFHALALRPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGM
                     DFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNPNVKNALVL
                     KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM
                     HALFNEPLQGESANTSNIVEIF"
     gene            7734..8330
                     /locus_tag="OQQ75_002757"
     CDS             7734..8330
                     /locus_tag="OQQ75_002757"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977020.1"
                     /translation="MGKSKKNRAAATKQTQHKNQTSAEAFSFGDPVPVLDRRELLDYV
                     ECVQTDRWYEPPVSFDGLARTFRAAVHHSSPIAVKCNILISTYIPHPLLSQQAFSRFV
                     QDYLVFGNAYLEKRTNRFGEVIALEPALAKYTRRGLDLDTYWFVQYGMTTQPYQFTKG
                     SIFHLMEPDINQEIYGLPGYLSAIPSALLNESATLFRR"
     gene            8364..8765
                     /locus_tag="OQQ75_002758"
     CDS             8364..8765
                     /locus_tag="OQQ75_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1977021.1"
                     /translation="MYMTDAAQNQEDVNNLRNAMKSAKGPGNFRNLFMYSPNGKKDGL
                     QIIPLSEVAAKDEFLNIKNVSRDDMMAAHRVPPQMMGIMPNNVGGFGDVEKASLEFVR
                     NELIPLQKRMMEINKLVSENIVKFDSYKLAT"
     gene            complement(8872..9753)
                     /locus_tag="OQQ75_002759"
     CDS             complement(8872..9753)
                     /locus_tag="OQQ75_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004982020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977022.1"
                     /translation="MKWAIEMNKLKRPVFKDYSAFKKLSANKRLKHHSVLNGQDTFIL
                     NAYRSYIKNKGYLNVNSCGVLSNNIAEALRYYYNNPAKCLSIIDDIRAANSNSLCPMC
                     GSMHSGTLDHVLPKENYPEFSLFTKNLVPACKCNTFKSTTIANSAGHRMLHPYFDNIL
                     KQRLICANFSKLGRTPTIDVKIIIDPMSPEYNNVKYHLDNVVIKNNIKGYLSEQWESF
                     YLYPELVIRGLNKSLSTYSDVYELLTRELLLLDEKHKGKNNWNSVFVAGLIRPDVIRW
                     ILCELHLGNRSPDGRLI"
     gene            complement(9737..11386)
                     /locus_tag="OQQ75_002760"
     CDS             complement(9737..11386)
                     /locus_tag="OQQ75_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000960487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1977023.1"
                     /translation="MLVKKNKNYSLYFLITNNQQISDSGNYIKIVPSRSDWNDFGYLS
                     RVEISIFNKKECKDIISLNGYIGFLNSEEERNGKAELIRRVKKKEESNLKDEGFNDYF
                     VMLQDMNNYRRLVRFFGVNESKYILNFINDVVSKKSDASAENLRKKAISSDIFNKSFI
                     RESESYFTFKNAGTVLSGIQYEELGNLSQHIKISYSNKVNEEDVSYVFNFDHEHDLPK
                     RISIIIGENGVGKSQTLREIALAAIKGKDNLVAVVDSNGVSIEERIQISRLIAFSPTN
                     ESKCSFPTDKRIKSLIWYKRLTLNRESKSKLNLNDLIVQLARSNDAIGYNQRWNIFVD
                     ALSVLNSNNDLVIKCGGENSPFVKLNELNSRGEESRLSLYSEIILSGEPLRLIENKCY
                     PLSSGEISFIKFCVQVCLYIENGTLLLIDEPETHLHPSFINKFMALLDNLLEKTGSSA
                     IIATHSVYLVREVFKEQVTILRRRDDGVIVSEKPRLSTFGANIGNISYFVFGESEPTQ
                     ILNKVKNNIIAKNMSWDDVESKYSEDLSLNVLTALRNEMGN"
     gene            complement(11679..11912)
                     /locus_tag="OQQ75_002761"
     CDS             complement(11679..11912)
                     /locus_tag="OQQ75_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HCS1977024.1"
                     /translation="MRIEIMIDKEQKISQSTLDALESELYRNLRPLYPKTVIRIRKGS
                     SNGVELTGLQLDEERKQVMKIMQKVWEDDSWLH"
     gene            complement(11923..12111)
                     /locus_tag="OQQ75_002762"
     CDS             complement(11923..12111)
                     /locus_tag="OQQ75_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977025.1"
                     /translation="MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDE
                     LMAKIRTHEYNRSMDVIS"
     gene            complement(12265..14679)
                     /locus_tag="OQQ75_002763"
     CDS             complement(12265..14679)
                     /locus_tag="OQQ75_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HCS1977026.1"
                     /translation="MSHADMNNCCGFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALS
                     NLITLYAADNEQEQLRREALSDQVWERYFFYESRDPVQHEMEQDKLISRAKLAHEQQR
                     FNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRPKAYSRYLRETIKPCLERLEHVRD
                     SQLSASFRFMASHVGLDGLLILPEMSQDQVKRLSTLVAAHMSMCLDAACGDLYATDDV
                     KPEEIRKTWEKVAAETLRLDVIPPAFEQLRRKRNRRKPVPYELIPGSLARMLCADWWY
                     RKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQRRKSLEFFRSHELVNEEG
                     DTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHSTLNN
                     GRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCF
                     MRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTSYIAKYISKNID
                     GRGLAGEISKETGKSLRDNAEYVNPWASLHRVQQFRFFGIPGRQAYRELRLLAGQAAR
                     QQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMRQGGVLVPRKYHLIRTAYEINEEP
                     TAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPWTRGNNCL
                     LAENLNQQEKDKSADGNPRTDITSMDDKELHDYLHSMSKKERRELAARLRLVKPKRRK
                     DYKQRITDHQRLQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQRLQEDD
                     QWRNLY"
     gene            complement(14676..>15313)
                     /locus_tag="OQQ75_002764"
     CDS             complement(14676..>15313)
                     /locus_tag="OQQ75_002764"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HCS1977027.1"
                     /translation="RVLFEIANREVAYYNIRQEFNYSTEITDFMKAVYFLYLNRHGYR
                     GLCRYNKSGHFNIPYGNYKNPYFPEKEIRAFAEKAQRATFICASFDETLAMLKAGDVV
                     YCDPPYDGTFSGYHTDGFTEDDQYHLASVLEHRSSEGHPVIVSNSDTSLIRSLYRNFT
                     HHYIKVKRSIGVAAGEGKSATEIIAVSGPRCWVGFDYSRGVDSSAVYGVRA"
BASE COUNT         3740 a         4139 c         3525 g         3909 t
ORIGIN      
        1 caattgaaaa caaataaaaa tcaagttagg tttttaatga acattctttc aattaactca
       61 atagattgga cattaaaacc taataactgc cttttcgcat agatggtata aatacctttt
      121 cgactgacgc gatcactcaa gccgtaatgg tgaatacggg caatgcgctg caccctacct
      181 tcaaactgta cgctggcaga atcggcgctg gctgcagttt tcaggtattt tgtggtgcgc
      241 agctttgtaa acatctgacg tttgatgcac ccctttttgc tgcgtgctgt taccctgcgc
      301 ggctcataac tgctgccatc aggattgcgc tgcatcctga tgttctgctg ctgtgtccgg
      361 cgcagttcct gcgccagctg gcgcatcatg cggcttcttg cggctggctc cagattcgcc
      421 aataatgcac tcagccagtc gtccaccttc tgcaattcag ccacgtttca ccgtccacat
      481 ttcttcaggt tcatcaggtt ccgctaccgc ttcaacgttc gacacactgc cgtcagtgct
      541 gaccagcaca cgctccgtca gttgcaggtt aaggctgata tcacagacat cgttgcgcag
      601 aatatccacc tcaaaggtga atagcttttc ccgtaacgcc gggttattga tcgcatcggg
      661 ctggttatcc cgcagccaca gcaaaaccgg ggccatcagc agattctggt cgccgctgaa
      721 atcttcaatc accacgttca gggtgtagcg gtactcccat gacatggagc tagccccgga
      781 ggcaaccagc gaaccgttat ccacaaacag atgcagtttg tccgggttat tacggacata
      841 aggcactgct ttattgaggg cgtggcgcag ggattgtggt ttgttcactg tttcgctcct
      901 gacacgcaat aatcatgtcc actttgtctg cacagaccgc ccaggcggcc tccgtttcat
      961 ccagcaacgc attcagatca ccgttagtgc gcggcgctgc ctgctccagc cgacacggcg
     1021 tcactcgcgg acaaccactg acggtaagct gcacctccgg tgagtgccgg acgttcccgc
     1081 agccggataa tgtcagcagg caaaggagta tcagcccagc gacgtaaatc ctcgttctca
     1141 cgtttcagtt cctcaatccg gcgttgtcgt tgtctcagca gtacactggt ctgttctgct
     1201 tcggcataga gccgcgcctg ctcccggtta ttggtttcag tcagaatgga caggctgata
     1261 agctggctgt tgctctttgc cagtgcctgg cttttgctct gcagctcgtc tgcctgcgtg
     1321 ctgatggtct ggctggcatc agccagccgc cacgtctgcc agcccagcgc cgccaataat
     1381 aacgccagca caaccagcag caaccggttc atgcggctac ctgttgcgcc atctgattat
     1441 gggtgatcca gaaggcaata acggtcagca gataaaagac cagggtaatg gcccaccccg
     1501 tccaggcgag actgacgaca atcagcaatc gtatcaccca gctgataaat acgttttctt
     1561 ttcgggtaat tgtcttcagt aaagatgccc tcaactcctg ccagagcggg ccattcttaa
     1621 ttaacgaagc cagtgctacc ggaattaccg cccatgtcag taaacaggct acccaaacgc
     1681 cggacgctgc cagtaccgga aaaatcccct gcggatacac cattgctgcg attaacagcg
     1741 ccatccataa catcagaaac agcccgctga ttaatttctt tttcatttca gtttgctccc
     1801 tgtaaacacc aggccatctc ccgcgcacgg cggttatcca gcccctgatt aaaaacacct
     1861 ttcacataaa cccagcgcgg caactgtcgg cacgcatccg cccagcgccg ctgattgagc
     1921 aatttcacca gcgtggaact gcaggcattg cccgtaccca cgttgaaggc aaacgacacc
     1981 gcagcgtcat acaccttctg cggcggctgt tgcttcacac acttttccag cgcccgctcc
     2041 acacgcagca cgttggagat cagcccttct gctgcctgtc gctccgtaat ggttttgccg
     2101 ggaatgacgc ccgacgtatt accaataccg tcggtccaga cacccgcgct gcactgatac
     2161 ggctgcagac gacaaccttc gtaatcggca atcagtttca gtccctccac ggaggtgtga
     2221 agctgctgaa aacccggcag cgtggcagca atagccagca cggccccgac aaggcagcgt
     2281 ttaacgattg atggattcat agtcctcccg cgagatctgc ccgtcgcgca gaagctggta
     2341 ggctttgtgt ttgtagtacc agttgatagc cagcatcagc acaccaatca tcaggccgcc
     2401 cagcgttgag gcatccttga tggacaaatc gcccagccag gccagcacga cggcgatgca
     2461 atacgtgata aaggcgctga ttcgctcaag cgtcataatt cagtcccata gctggacggt
     2521 ctgcacggtg gtggtggtcg gaatgtccgg cagctccacc tgcagcccgt gaggtaaaaa
     2581 ggggccgtat tcggcaagcc ccggatttgc cttcagtacc tgctccgtga caccctgcgt
     2641 gcgcccgtaa tgacgccagc aaagcgcgtc caccgtgtca tactgatgcg cacgcacttt
     2701 catcagataa gctccactgt gcagtgcggc gcgtcctgca cccggctgat ggcccagcgg
     2761 gcgtcacgcc acaaatcacc gcttgcttcc gccagttctt cgccccgctt cgcaccggat
     2821 gccgtggcgt catagtcctg gaaacgttcg ttgagcatgg cgcgagccca gcagtaaacc
     2881 gcgttgaaat agtgctgaat gcgctcactt ttcccgtcca gctgttccgc cggaacctca
     2941 gccagcgacg cataccccag catctgctgg cgtctgcgaa actcatacag ctctgcgtta
     3001 acctccgaaa ttgccgacag tgcaacctgc tttaaacgcg gctgcgtcac cgtgccgtca
     3061 gtgcgcatga cactgcgaaa ctccgacagg tccacatcag gccagaacgg cgtatttcta
     3121 atgatttccg cctgttccgg tgcctgttct ggcgcaacaa acttcatgct gctttctcct
     3181 gaaataaagg gcggtggacg gggttttgat gtggctgtgc ctttcgccac cccgtgccgc
     3241 ccgtgcgcgg gggcacgttc tgtcagcggc tgtcattgcg cagtctgcgc tccagctgct
     3301 gtttgtcttt tttcacgcca cagcggggat cgagctgtaa cgcatggttg agatgattaa
     3361 gggcggaagc cggattgctt tcactcagga ccgcgccaat cgctttatgc agacgtgccc
     3421 gtgactggtc cggcatatcc agaccgtctg tcagctccag cgtctgcagc aacagatcgg
     3481 catcaaagcc ggtggcggca agcattgcgc tctgcgctgc atctgccatt tcctctgtca
     3541 gcacggtctg cacgttgcgg ttgcccagcg gcatcaccca tccatgacgc agggcatgac
     3601 gcccgatctc cagcgccccg gcataatctc cggcatcaat gcgccacaac atcacgtaca
     3661 tcagcacgtc atcctgttga gcgcctccgg cagccaggac accctccgcc caggcggcgt
     3721 acttcggcag cagctccact ttgatttccg cttttttgac cgtggactga acgcccttga
     3781 gacggcggcg gtcttccgcc agttgcagca gcatcaggtc atagcccgat gcgtggcgaa
     3841 cactgccacc ctcacggacg gcctgttcag cctgaacgcg caggcgatgc tgccgtgcgg
     3901 gactcaggct catggattac gctccggttt cggctgcggc ggcgctgaaa tcactaatct
     3961 ggatgttttc caccagtgcg gcgcagcggt agtcctcaac cacataggct tcgttaacgg
     4021 attcaaagtt ttcaatccgg tcacgtttcg ggttgtcgat aactgaacgg cggcgggtgt
     4081 cttcctgcca gtagatggac aggttatcca gacgggtgat cagcagcgca ttcggcggga
     4141 agaacggcgc acgcacggcc tgcaggccac ccatgcgttt ctgactgatg atcatatcgg
     4201 cagccagttt ttcactgttt tcctgctctt tgttgaccag cgggaaatac ttgtcagaca
     4261 gcagttcacg accgcaaatc accaccagat cgtcatcgtc ctggtagacc acgtcgataa
     4321 gctcattgac ggcatccatc accacggcgt ccaggttggc atattcgcca cctttcccga
     4381 ctttcactgc gcccggtgtg gtttcaccgc ccgtggtggt gctgcccatg acgtgatccg
     4441 gtgcatcctc acggattttc tgcagccagc ctttattcac atcctgcagc agcgggtttt
     4501 cgctacggtt ggaggttttc gcacgcttca cgccattaaa gccgatcatg atgcggtcca
     4561 gtgcctgacg tttcacgatg gcgtcacgga tacgcacctg aaaatcctga aacttcgccc
     4621 acaggtccag cttcgcgtag gtcagcaccg tgtcaaagtt ggtctgctcg catttatatt
     4681 ccacatcgac catcagcgtc ggatcgacag gttcacgctc tttcgcagtg gtatcagtgg
     4741 ttccggcaat ggtgctgcca actcccaacc ccagcagctg accggactgc tcagtcactg
     4801 gcgtgacgtt aatcagagtc aggaaagcgg cggactgctg gatctggtct tccagcgtct
     4861 gctgcacgga cggctctacg gtgaacttgc tggacagttc ttcaactgcc acaccgttca
     4921 gacgcgccag ttgctgcagg taagcgttaa aagcaaagcg ggtattcttc ttcatcaggt
     4981 tttgtgctcc atcagcaatt ggtcagagtg tcagcggggg cgttaccgcc tgttgcacgc
     5041 tggcggtagt cctggcggct gtcttcatga ctcagcttgt ccaccagttc gttaaaggcg
     5101 gtttgctgtg cctgcagggc agtctccagc tcagacaggc gttcttcctg ctcagacagg
     5161 gatttttcgg tgcgtgcgct caggttctgc tgctcagtgg cgaccagctc cacggcctta
     5221 tgcacatcag agaaccgggc gtcatcggac tgctcttttt tggtaaacag cgccgtgacg
     5281 cgggcaaaca gggacggttt gtcgtcctgg acttcttcca gttcgatcac cgtttcctct
     5341 gcggcggtaa agagattggc gggattctgc ttgcggtttg ccagcgggtt atgggctgca
     5401 ctggcgctga atgtcagcat ttcagtgccc agactggcag ggtcatcagt ggcagccagg
     5461 ccgactaggt aggctttgcc cgtatcagcg aacttcgggc tgacttccat aaaggtgaat
     5521 aatttctggc cttttttcac cagttccacc agggactccg ttggctcaac gtcagcatac
     5581 agcgccatct tgcctgccag cggaccttcc gtgatttctt cagcaaacag cgccgtcacc
     5641 ttgccgtagc ggttaaaggt gctgtccggc agataagact tgatgtgctc aaggttaatc
     5701 agcgcggtat acaccgccgg gttatagctg gctgccatct gttccagcca ttcacgctgg
     5761 atttcgcgtc cgtcggtggt ggcaccttcc accccgatgc gaaaacgctt tgctttcact
     5821 gtcatgagcc gtgctccgtt agaaaaaact tactggagcc ttatggttgc ggtgataggg
     5881 gcagtgaaac aatgcgcggt atttgtaccg acaaccacac aaaccgcagg cggggaaagc
     5941 cttcattcaa ggctgtaggt ttgtgccatg aacaccacac tgacacccgc agatctcgat
     6001 ccccgtcggc aggccatgct gctgtacttt cagggatacc gcgtagcccg cattgctgaa
     6061 atgctgggcg agaaagttgc aaccgttcac agctggaaaa aacgcgacaa gtggggtgac
     6121 tatgggcctc tggatcagat gcagctcacc accgccgcac gctactgcca gctcatcatg
     6181 aaggagcaca aagaagggaa agatttcaaa gagattgacc tgctggcgcg ccagtctgag
     6241 cgccacgcgc ggatcggcaa gtttaacaat ggcggcaacg aagccgactt aaaccctaac
     6301 gtcgccaacc gcaacaaagg cccacgccgt cagcctgaaa agaatgtttt caccgatgac
     6361 cagattgaga agctggaaaa aattttccat tcctccatgt tcaactacca gcgccactgg
     6421 tgggaagccg gaaaaaccaa ccgcatccgc aacctgctga agtcacgcca gatcggcgcg
     6481 accttctatt ttgcccgtga agccctgatt gacgccctgc ttaccggacg taaccagatt
     6541 ttcctttctg ccagtaaggc acaggcccac gtcttcaaac agtacatcat cgactttgcc
     6601 aaagaagtgg aggtggagct gaaaggcgat ccgatggtgc ttcccaacgg ggccacactg
     6661 tatttcctcg gcaccaatgc ccgcactgcc cagagttatc acggtaacct gtatctggat
     6721 gaatatttct ggataccgaa atttcaggag ctacgcaaag tggcttccgg tatggctatt
     6781 cacaagaaat ggcggcagac ctatttttcc acaccatcca gtctgaccca cagtgcttat
     6841 ccgttctggt ccggtgcgct gttcaaccgt gggcgcaaca aagctgacaa ggtggacatc
     6901 gacctgtccc acagcaatct ggcccccggc cggctgtgcg cagacgggca ataccgccag
     6961 atagtcaccg tggaagatgc ggtgcgcggc gcctgtaacc tgttcgacct tgaccagttg
     7021 cgcatggagt acagccctga cgaataccag aacctgctga tgtgcgagtt cgtggacgat
     7081 ctcgcgtccg tgttcccgct cagcgaattg caggcgtgca tggtggacag ctgggaagtc
     7141 tggaccgact ttcatgcact ggccctgcgc ccgtttggct ggcgcgaagt gtggatcggt
     7201 tatgacccgg caaaaggtac gcagaacggc gacagcgccg gatgcgtggt ggtggcaccg
     7261 ccagccgtgc caggcggtaa gttccgcatt cttgagcgtc accagtggcg cggaatggac
     7321 tttcgcgccc aggctgacgc catcaaaaaa ctgactgaac agtacaacgt gacctatatc
     7381 ggcatcgact caaccggcgt tggtcacggg gtttacgaga acgtgaaagc gttttttcct
     7441 gccgtccggg agtttgtcta caaccccaac gttaaaaacg ccctggtact caaggcctac
     7501 gacattatca gccaccgccg tcttgagttt gacgccgggc acaccgacat tgcgcagtca
     7561 ttcatggcaa tccgtcgcgc caccaccgcc agcggcaacc gcccgaccta tgaagccagc
     7621 cgcagcgaag aagccagcca tgccgatctg gcctgggcaa caatgcacgc actgtttaac
     7681 gaaccgctgc agggcgagtc cgccaatacc agcaatattg tggagatttt ttgatgggaa
     7741 agagtaagaa gaaccgcgct gcggcgacga aacagaccca gcataaaaac cagacttcag
     7801 ccgaagcatt cagcttcggc gatcccgttc cggttctgga ccgccgtgaa ctactggact
     7861 atgtggaatg cgtacagaca gatcgctggt atgagccgcc agtgagtttt gacggactgg
     7921 cgcgcacctt ccgcgccgcc gtgcatcaca gttcaccaat tgcggtgaaa tgcaacattc
     7981 tgatcagtac ctacatccct cacccgctgc tcagccagca ggctttttca cgttttgtgc
     8041 aggattatct ggtatttggt aacgcttacc tggagaaacg cacaaaccgg ttcggagagg
     8101 tcatcgctct tgagcctgct ctggcaaaat acacccgacg cggattagac ctggatacct
     8161 actggtttgt gcaatacggc atgaccacgc agccgtatca gttcacgaaa ggaagcatct
     8221 ttcatctgat ggaaccggac atcaaccaag agatctacgg cctgccaggt tacctttctg
     8281 ccattccgtc agccctgctc aacgagtccg ccacgctgtt ccgccgatag tattacatta
     8341 acggcagtca tgcaggcttc atcatgtaca tgaccgatgc cgcgcaaaac caggaggatg
     8401 tgaacaacct ccgcaatgcg atgaaaagcg ccaaaggacc aggtaacttc cgcaatctgt
     8461 ttatgtactc gcctaacggc aaaaaggacg ggcttcagat catcccgttg tcagaagtcg
     8521 cggcgaagga tgagtttctg aacatcaaga acgtgagccg ggatgacatg atggcggcgc
     8581 atcgtgtgcc accgcaaatg atggggatta tgcctaataa tgtcgggggg tttggggatg
     8641 tggagaaggc gagcctggag tttgtacgta acgagttaat accgttacaa aaaagaatga
     8701 tggaaataaa taaattggta agtgagaaca ttgttaaatt tgatagttat aaactagcta
     8761 cttaacgtaa tcactaaatg aggttcttta acacagctaa aaaatttatt aatagccagc
     8821 agtttttatg aatttcttca gcgtgcagat acacgctgaa gatgcaaaaa atcatatgag
     8881 acgaccgtct ggacttctgt tacctaaatg taattcacag agtatccacc taatcacatc
     8941 aggtcgaatt aacccagcta caaaaaccga attccaatta tttttacctt tatgtttttc
     9001 atccaacagc aacaactcgc gagtcaacaa ctcatataca tcgctataag tagaaagact
     9061 cttattcagt cctctaataa caagctcagg atataagtaa aacgactccc attgttcaga
     9121 caaatacccc ttaatattat tcttgataac aacattatca agatgatact taacattgtt
     9181 atattctggt gacattgggt caattatgat ttttacatca attgtaggtg ttcgccctaa
     9241 tttagaaaaa ttagcacata ttaatctttg ttttaatata ttatcaaaat atggatgcag
     9301 catccgatgg cctgcagaat tagctatagt agtacttttg aaagtattac atttgcaagc
     9361 aggaaccaaa ttcttagtga ataaagaaaa ttctggatag ttttccttgg gtaaaacatg
     9421 atccaaagtc ccgctatgca ttgaaccaca cattggacat agagagttag aattagctgc
     9481 tcttatatca tcaattatag ataaacactt tgcgggattg ttataataat atctcaaagc
     9541 ttcagcaata ttgttactca atacgccaca agaattgaca ttaagatacc ctttattctt
     9601 tatgtacgat ctatatgcat taagtataaa tgtatcctgt ccattcagaa cagaatgatg
     9661 ttttaatctc ttatttgcag atagtttttt aaatgcagaa taatctttaa aaacaggtct
     9721 ttttaattta ttcatttcaa ttgcccattt catttctcaa cgcagttaat acattaagtg
     9781 ataagtcctc gctatattta gattcaacat catcccaaga catattcttt gcaattatat
     9841 tgttttttac tttatttaaa atttgagttg gttcactctc accgaaaaca aaatatgaga
     9901 tatttcctat attcgcccca aaagtactca atctcggttt ttcgctaaca attaccccat
     9961 catctcgtct tctgagtatt gtcacttgct ccttaaaaac ctcccgaaca agataaaccg
    10021 aatgcgttgc tatgatagct gaagagcctg tcttttctaa taaattatca agcaatgcca
    10081 taaatttatt aataaatgaa ggatggagat gtgtttctgg ctcatctatt aatagaagag
    10141 tcccattctc aatatacaaa cagacttgta cacaaaactt aataaacgat atttccccac
    10201 tactcaaagg gtaacattta ttttcaataa gcctcaaagg ctcgccagag agaataattt
    10261 cagaatataa tgatagtcta gattcttcgc ctcgagaatt aagctcattt aatttaacaa
    10321 atggtgaatt ttcaccgcca catttgatta ctaaatcgtt gttactattt agaacactca
    10381 gtgcatcaac aaatatattc cacctttgat tatagccgat agcgtcgtta ctcctcgcta
    10441 gttgcactat taaatcattc aagtttaatt tggattttga ttcacgattt aaagtcaatc
    10501 ttttgtacca tatcaatgat tttattcttt tatcggttgg aaatgaacac ttactttcat
    10561 ttgttggaga aaaagcaatg agcctactaa tttgaattcg ttcttcaatg ctcacaccgt
    10621 tagaatcaac tacagccacc aaattatcct ttcctttaat cgcagccaat gcgatttctc
    10681 taagcgtttg gctttttcct acaccattct cgcctataat tatggaaatt ctttttggta
    10741 aatcatgctc gtgatcaaaa ttaaaaacat aagatacatc ttcttcatta actttattcg
    10801 aatagctaat cttgatgtgc tgtgataaat tacccaactc ctcatattga ataccggaaa
    10861 gaactgttcc tgcatttttg aaagtaaaat acgactcaga ctctctaatg aaagatttat
    10921 taaagatatc agaagagatt gcttttttcc tcaaattctc tgcactagcg tcacttttct
    10981 tagaaacaac atcattaatg aaatttaata tatatttgga ttcattcacc ccaaaaaatc
    11041 ttactagtct tcgataatta ttcatatcct gaagcatgac aaaataatca ttaaacccct
    11101 catcctttaa attagattct tcctttttct tcactcgcct tatcagttct gcttttccat
    11161 ttcgttcctc ctctgaattc aaaaaaccaa tataaccatt cagtgaaatt atatccttac
    11221 actctttttt attaaaaata gatatttcga ctctactcaa atatccaaaa tcattccaat
    11281 cgcttcttga tgggactatt tttatataat taccagaatc agatatctgt tgattatttg
    11341 taattaaaaa atataaacta taatttttat ttttcttgac taacattatt accctctcac
    11401 ttcattagtg atgatttatt ttggaattat tttacacact tatacctagc gcgcaatcgt
    11461 atccccgcca cgcctgcccg ctttatgtag aggttttcat gcacctgcat gatctacgca
    11521 aaagcccgcc agttctggcg ggccttagca aaaacgatcc tcaaacgatc atgcgatctc
    11581 atgcggcata gacatgcact acagagctaa cgcctcgcaa gggctcgttg ttcaaccttg
    11641 ctgacgccag aagctagttc agacgccagc aacgtttctt aatgcagcca gctgtcgtct
    11701 tcccacacct tctgcataat tttcatcact tgttttcttt cttcgtccag ttgcaatcca
    11761 gtaagttcca caccgttaga gctacctttg cggatacgaa ttaccgtttt gggatacaga
    11821 gggcgcagat tgcggtaaag ctcggattca agagcgtcca gggtagactg gctaatcttc
    11881 tgctctttat cgatcattat ttcaatgcgc ataaaagtca cctcagctga tgacatccat
    11941 tgagcggttg tattcgtggg ttctgatttt tgccatgagt tcatcagtca attcagaaac
    12001 ccactgcaga gccagcccct tctcttcatc actacactca ctagccgcta caagcttaag
    12061 aaaaaaatca atgcgctgga gcttcaaaga ctccaaaaaa tagtcctgca tctttcctcc
    12121 tatgacacca cacgcaatac tgtatgcata accactgttt atatttacag catataataa
    12181 tcttactgat gtaaaacgtt tttttacgtt catcagcctg atatgcctgg tattattaag
    12241 agcacgaatt gttaacccgc gtaattaata caggttccgc cactgatcat cttcctgcaa
    12301 acgctggttc cgatagaaga tacgcaggcc tgctcctgac ggaatactgc ctccgcgaag
    12361 gagtaaatcg acctctttct cgctgccatc aaatcctctg gacttcagct catacacgag
    12421 ctgcagtcgc tgatggtctg taattcgctg tttgtagtct ttacgccgtt tcggtttcac
    12481 caggcgtaac cttgctgcca gttcccggcg ctcttttttg ctcatactgt gcaggtaatc
    12541 gtgcaactcc ttgtcatcca tgctggtaat gtccgttctg gggttcccat cagctgattt
    12601 atctttctcc tgttggttca aattttcagc aaggagacag ttattgccac gagtccaagg
    12661 ggcgcaagcg ccctggtcgg ctgccgcctc ctgaacgtca acggctttac gaaccatttt
    12721 ccacttcact gcatgagtgc agatcttgcc ttctgcaatg ggtgaccaga tgccataaat
    12781 acgaataccg tgatcgccat aggcggtcgg ctcttcattg atttcataag cggttctgat
    12841 caagtgatat ttgcgaggaa ccagcacgcc gccctgcctc ataatgtagg tggcaaaaca
    12901 gccagcatca gcagcagcca ggatggcatc aaggcgcggg ttatccagta ccggcgcacc
    12961 tgcttttttg tcaccctgct gccttgccgc ctgaccagcc aacaaccgca gttcacggta
    13021 agcctgacgc cctggaatac caaagaagcg gaattgctga acacgatgca gagacgccca
    13081 gggattaacg tattcagcgt tatcacgcag ggatttaccc gtttccttgc tgatctcgcc
    13141 agccagacca cgcccgtcaa tgttcttact gatgtatttc gcgatgtagc ttgtcggcgt
    13201 tcctttgcgc gggtttatca gctcagattt aaagcgtgga ccagtgttat tacccagttc
    13261 ctcgcggtct tcacggatgg caaacttacg caacaatgca gtaatggcgc ggcggtcttt
    13321 tttgcgcata aaacacaaca ggtgccagtg aactgtaccg tcatgatgcg gctcagccac
    13381 ccgcacgcca taccagcgca acccggcttt gtgcatcgcc ttacgaaatg cagcaaacat
    13441 gccgaccaga taatcgctgc tttgtcttac cgtcgcattt gtccaggttg ggtttggtct
    13501 gccgttattg agcgtggaat ggaaacgtga cggacaggta atggtgtaga aaacggcgca
    13561 gtcaccgcgc atttccgcga taagctccag acctttaaca caggccatca tctcattgcg
    13621 gcggtgcgcc gggttgctgc tgctggcgtt taccacgtct tccatatcca gcgtgtcgcc
    13681 ctcttcgttc accagttcat gagaacggaa aaactccaat gacttgcggc gctgctcacg
    13741 tttatgcatc acggcttcat agctgacata gggagatgct tttttgctga ccaggcagac
    13801 agcacgcaac tgctcttccc gccattcgca acgcattttc cataatttcc ggtaccacca
    13861 gtcggcgcac aacatacgcg ccagcgaacc cggaatgagt tcatagggca cgggtttacg
    13921 gcggtttctt ttccgacgga gttgctcaaa cgcaggcggg atgacatcca gacgcagggt
    13981 ttccgctgcc accttttccc atgtcttgcg gatttcttct ggcttaacgt catcggtggc
    14041 atacaaatca ccacaagctg catcaaggca catgctcata tgcgcagcga caagggtaga
    14101 caggcgtttc acctgatcct gactcatttc aggcagaatc agcaggccgt ccagccctac
    14161 atggcttgcc ataaaacgaa aagatgcaga tagctggctg tcgcgtacat gctccagtcg
    14221 ttccagacat ggcttaatcg tctcacgtaa atagcgggaa taagcctttg gcctgcccag
    14281 gctgctgaag tattcaatac gttgcatcag cggcttgctg atatgggaag gctgggcgtt
    14341 gacgtccgcc agaatgacca tatccggatt aaaacgctgc tgctcatgcg ccagctttgc
    14401 ccggctaatg agcttatcct gctccatttc gtgctggaca ggatcacgtg attcataaaa
    14461 aaaataacgc tcccagacct gatcactcag tgcctcgcgg cgcaactgtt cctgctcgtt
    14521 atcggcagcg tacagagtga tcaggtttga aagcgcagaa accggcgcaa cttccgccgg
    14581 gtccagataa gggttaatgg cctttttcgg gctgttccat gagaacgctg cggcagcctc
    14641 gttaaagccg cagcagttgt tcatatcggc atggctcatg cacgtactcc gtacacggca
    14701 gaactatcca cgccacgcga ataatcaaat cccacccagc agcgcggccc ggaaacagca
    14761 atgatttctg ttgctgattt accctcgcca gctgccacac cgatgctgcg ttttaccttg
    14821 atatagtggt gagtaaaatt gcgatacagc gaacggatca gggatgtgtc actgttagaa
    14881 acaatgaccg gatgtccttc tgatgaccga tgttcaagaa cggatgctag gtgatactgg
    14941 tcatcttcag tgaaaccatc agtgtgatag ccggaaaacg taccgtcata cggtggatcg
    15001 caatacacca catcccccgc cttcaacatc gccagcgttt catcaaagct ggcgcagata
    15061 aacgttgctc gctgggcttt ttctgcaaat gcgcgaattt ctttttcagg gaaatacgga
    15121 tttttataat tgccgtaggg aatgttgaaa tgcccgctct tgttatagcg acataaacca
    15181 cggtaaccgt gacgattgag atacaggaaa tataccgctt tcatgaaatc agtaatttca
    15241 gttgagtaat taaactcctg ccttatgttg taataagcca cctccctgtt tgcgatctca
    15301 aataaaactc tgg
//
LOCUS       DAJVUP010000100        15146 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.100, whole genome shotgun sequence.
ACCESSION   DAJVUP010000100 DAJVUP010000000
VERSION     DAJVUP010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15146
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.100"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..321)
                     /locus_tag="OQQ75_002765"
     CDS             complement(<1..321)
                     /locus_tag="OQQ75_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707676.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HCS1977028.1"
                     /translation="MMKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVA
                     LKTDAETEKLVTDINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGIN
                     GKWVR"
     gene            complement(326..511)
                     /locus_tag="OQQ75_002766"
     CDS             complement(326..511)
                     /locus_tag="OQQ75_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HCS1977029.1"
                     /translation="MKILLAALTSSFMLAACTPRIEVAAPKEPITINMNVKIEHEIII
                     KADKDVEELLETRSDLY"
     gene            complement(508..3147)
                     /locus_tag="OQQ75_002767"
     CDS             complement(508..3147)
                     /locus_tag="OQQ75_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH family protein"
                     /protein_id="HCS1977030.1"
                     /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRI
                     ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKL
                     PQTEQSPAAPKTLAQWQSMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE
                     KVKFQGQLKGQQLTVSELDVIAFEYQPPVKLVGEFTMPLVPDGLPVSGHATATLNLPQ
                     EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLS
                     GRLGVKVDNWQAGLENALISGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG
                     EAKQADLILYARLPAQLSGSLTDPTLAFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV
                     TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW
                     DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPVVWVRDAQHPSFSGAL
                     SLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR
                     GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW
                     MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE
                     EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF
                     SGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS
                     RSSTNINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA
                     WLEQNARLPGNDCPQGKECEEKQ"
     gene            3355..4344
                     /gene="ldhA"
                     /locus_tag="OQQ75_002768"
     CDS             3355..4344
                     /gene="ldhA"
                     /locus_tag="OQQ75_002768"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1977031.1"
                     /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG
                     CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP
                     EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML
                     RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPANYHLLNEA
                     AFDQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI
                     QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV"
     gene            4455..4877
                     /gene="hslJ"
                     /locus_tag="OQQ75_002769"
     CDS             4455..4877
                     /gene="hslJ"
                     /locus_tag="OQQ75_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HslJ"
                     /protein_id="HCS1977032.1"
                     /translation="MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKP
                     VTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELD
                     NTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN"
     gene            complement(4874..5140)
                     /locus_tag="OQQ75_002770"
     CDS             complement(4874..5140)
                     /locus_tag="OQQ75_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015964583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HCS1977033.1"
                     /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEA
                     NCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY"
     gene            5414..8938
                     /gene="nifJ"
                     /locus_tag="OQQ75_002771"
     CDS             5414..8938
                     /gene="nifJ"
                     /locus_tag="OQQ75_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HCS1977034.1"
                     /translation="MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL
                     KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP
                     FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSR
                     VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANP
                     DSYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAI
                     GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQTLPGSVRSVAVLDRTKEPGAQAE
                     PLYLDVMTALAEAFNNGKRETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF
                     TVGIYDDVTNLSLPLPENTQPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ
                     GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGG
                     IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF
                     FHLTQILPGDSALAELQGAIAKSYSSKGQDLVEGNWQALALARESVEEVPLQPVNPHS
                     ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP
                     IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV
                     APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKL
                     ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP
                     STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT
                     ALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG
                     GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM
                     MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL
                     TATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQPEVAEQL
                     WKDAAADLQKRYDFLAQMAGKAEKSNTD"
     gene            9304..10437
                     /gene="ompN"
                     /locus_tag="OQQ75_002772"
     CDS             9304..10437
                     /gene="ompN"
                     /locus_tag="OQQ75_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpN"
                     /protein_id="HCS1977035.1"
                     /translation="MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGL
                     KFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
                     GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAY
                     TSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVAN
                     KTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATY
                     YFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF"
     gene            10578..11012
                     /gene="uspF"
                     /locus_tag="OQQ75_002773"
     CDS             10578..11012
                     /gene="uspF"
                     /locus_tag="OQQ75_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310024.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspF"
                     /protein_id="HCS1977036.1"
                     /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL
                     PYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILEL
                     AKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR"
     gene            11569..12483
                     /gene="sitA"
                     /locus_tag="OQQ75_002774"
     CDS             11569..12483
                     /gene="sitA"
                     /locus_tag="OQQ75_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000949004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter substrate-binding
                     protein SitA"
                     /protein_id="HCS1977037.1"
                     /translation="MHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAK
                     NVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNG
                     VPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQ
                     RNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINAD
                     QQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTEN
                     GPVPTYIDLLKVTTSTLVQGIKAGKREK"
     gene            12483..13310
                     /gene="sitB"
                     /locus_tag="OQQ75_002775"
     CDS             12483..13310
                     /gene="sitB"
                     /locus_tag="OQQ75_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter ATP-binding
                     protein SitB"
                     /protein_id="HCS1977038.1"
                     /translation="MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGS
                     GKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM
                     MGRYGYMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
                     GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGT
                     VLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR"
     gene            13307..14164
                     /gene="sitC"
                     /locus_tag="OQQ75_002776"
     CDS             13307..14164
                     /gene="sitC"
                     /locus_tag="OQQ75_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitC"
                     /protein_id="HCS1977039.1"
                     /translation="MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD
                     ALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFF
                     GLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
                     DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP
                     RLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRR
                     AHKALEDRS"
     gene            14161..15018
                     /gene="sitD"
                     /locus_tag="OQQ75_002777"
     CDS             14161..15018
                     /gene="sitD"
                     /locus_tag="OQQ75_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitD"
                     /protein_id="HCS1977040.1"
                     /translation="MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMG
                     DAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGM
                     FAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
                     FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRF
                     HIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNA
                     HTQDLLSPN"
BASE COUNT         3798 a         3800 c         3679 g         3869 t
ORIGIN      
        1 tcgtacccat ttaccgttta tcccttgtac atattccccc ggtttggccc gagctacgag
       61 cttttgcccg gcgagtttcg cgatatcatc tacagacaca ttattttgct ttgccagttg
      121 ttggtaactc gctttacgtt cggcattaat gtcggttact aatttctctg tttcagcatc
      181 cgttttcagc gcaaccagat aaccataaaa tgtttccccg acccgcccct gcgttctggc
      241 ttcatccaga gtcaatgcca ttacattgct gcttaccagc ccaacaagaa acgcacaaag
      301 aagtaatgtt ttcttcatca tcgcctcagt aaagatcgct acgagtttca agcagctctt
      361 cgacatcttt gtctgccttg atgatgatct catgctcaat tttaacgttc atattgatag
      421 tgatcggttc cttgggcgca gcgacttcaa tacgcggcgt acaggcagcc agcataaaag
      481 atgacgtcaa cgcagccagt aaaattttca ttgtttttcc tcacactctt ttccttgcgg
      541 acagtcattt cccggcagac gtgcgttctg ctccaaccat gcctggagat tatcgccaaa
      601 gcgtaaactg cgccacagcg taaaaatatt ctcttcatga tggtaattaa ggtttaccgt
      661 accgctttta ccatcaacgc gactggtacc tgtaatgttg gcctgcatgg ttaataaacc
      721 gagattatct aaattaatat ttgtcgatga acggctaatt tccatatagc gcaaccagtt
      781 aattgctgaa cccgcagtca tattgtcttt caccaccgca tctgcggtgt ctttatccag
      841 ccgcaaggtc attggcccgc tatttgccag ccaaccatct ttcactatcc atttttcgtt
      901 gtttagccat aacggcaatg caccactaaa tgccccggac atggcgaatt gtttcggatt
      961 gacggcgcta accagttcgc tggatgagag attattcagc cgcaacagcg ccgggtcatg
     1021 ttgcggcata cgtaattgtt tcatcagtac gttaccgcct aacacatcga cgctaacatc
     1081 agtcaacagc aagggttctt cttcagtcca cggataacgc ccttgcaaat cagccgtaat
     1141 atttttcgct gtcaccagat taatcacttc ggcaattcgc aacgtaacgg ggccgcgagt
     1201 ccccagatgc caggctccat cggcaaaacg gaaaggcagg acaaaatcga caccgttaac
     1261 ctgattatct ggcatccagg cactaccgcc tttcaacacg ccgtgccctc ccgcgcggaa
     1321 tccttgttca ggcgcagcag aaaatgcaac ctgagcatac agttcaccat cgcgtaagtt
     1381 catcttccag tcgggtggca ccagcggctg gaatacagtc agtgattgtt ttggccacca
     1441 ggcgttaccg cgcagacgaa taccgtccca gcgaccattt acccgaaccg ggccaatctc
     1501 accagcatgt aaatcgcctt taaagaggaa atacgtcgga tcgcgcccat cgacgctaaa
     1561 ttttaaggtt gatggcggta acacactgcc gccagtgaac agcgtttgcc cggcgtccag
     1621 tgacagcgcg ccgctgaagg agggatgctg tgcgtcacgt acccagacga cgggcttgtc
     1681 cagaattaat cgcggctttt ctaccgtcat cgtaccgtat tgtaactggt cgaaaccggt
     1741 ggagaggtcg gtcagcgtaa tcgtgctgtc atgccattca ccttttcctg cgacatccca
     1801 ggtggcattc atcggtgtaa aactgccttt tccccagtag cgccactgcc agcggcccgc
     1861 gtcagggaga aaatcattcg ccagcccatc catatgcagc acgaaatcgc ccagttcatt
     1921 ttcatgcgcc tgcaaaatgg cctgcaaacg tccgtcaaca ccacgttggg tgacttttac
     1981 acccgctaaa ggccagcgga tttcatcgat gtccagcgaa tcgatgactc ttccctttga
     2041 acgaagtaac gcgcctggct caaaggccag cgttgggtca gtcagacttc cacttagctg
     2101 cgcgggtaag cgggcatata aaatgaggtc cgcctgtttc gcttcaccgg tcagctgcag
     2161 aggcagctgg ctgttatcca tgcttaattt tcctgggcca aaatttagca ccgcgttgcc
     2221 tttacccgct tgcccctggg tcagcacact cagtcgtccg ctgatcagag cgttctcaag
     2281 ccctgcctgc cagttgtcga ctttgacacc cagtcggcca ctcaaaggaa aacctgcata
     2341 cggccaactc cagcgaccat cgcttacggt caattgttga cgagtaattt gccacggcaa
     2401 atcgagcaac ggatcgccgt tatcacgtgc cagcacaatc aattgcccgc tattttcctg
     2461 ccagtccagc tctgcatcca ccagtgacgg ttcctgcggc aagtttaacg tcgcagtagc
     2521 atgcccactt acaggaagtc catccggcac gagcggcata gtaaattccc ccaccagttt
     2581 aaccggcggc tgatattcaa acgcgatgac atccagttcg ctgactgtaa gttgttgccc
     2641 tttcagctgg ccttgaaatt taactttttc gccctgataa cgcagttgct ggatatcaga
     2701 ggttaatgcg agagagagtt ttccctgcca ttcctgccag ggagaaaaaa tcagtttatc
     2761 gatattgatc caggtgttag gcagcatgga ctgccactgc gcgagggttt ttggagcagc
     2821 tggcgattgc tccgtctgcg gcaatttcgc cagacaagca gaatcaagtt ctaccgtgcc
     2881 gacgttcaat aaccagcggc tgggatgtga aaggctggcg ttggtgatat gtgcaagctg
     2941 acaatctccc accagataac ggagatcggg aatgattaaa cctttacgcg taatgcgtgg
     3001 gctttcatct aatgcaatac gtgtcccgag cggtagccag atgcccgcca gcgtgggaac
     3061 ccacagcccg agcgtcatca gcagcgtcaa cggcacaaga ataatcagta ataacagcgc
     3121 gagaacggct ttatatttac ccagcatggg tagttaatat cctgatttag cgaaaaatta
     3181 agcattcaat acgggtattg tggcatgttt aaccgttcag ttgaaggttg cgcctacact
     3241 aagcatagtt gttgatgaat ttttcaatat cgccatggtt ttcaattata tttgaaattt
     3301 tgtaaaatat ttttagtggc ttaaatgtga ttcaacatca ctggagaaag tcttatgaaa
     3361 ctcgccgttt atagcacaaa acagtacgac aagaagtacc tgcaacaggt gaacgagtcc
     3421 tttggctttg agctggaatt ttttgacttt ctgctgacgg aaaaaaccgc taaaactgcc
     3481 aatggctgcg aagcggtatg tattttcgta aacgatgacg gcagccgccc ggtgctggaa
     3541 gagctgaaaa agcacggcgt taaatatatc gccctgcgct gtgccggttt caataacgtc
     3601 gaccttgatg cggcaaaaga actggggctg aaagtagtcc gtgttccagc ctatgatcca
     3661 gaggccgttg ctgaacacgc catcggtatg atgatgacgc tgaaccgccg tattcaccgc
     3721 gcgtatcagc gtacccgtga cgctaacttc tctctggaag gtctgaccgg ctttactatg
     3781 tatggcaaaa cggcaggcgt tatcggtacc ggtaaaatcg gtgtggcgat gctgcgcatt
     3841 ctgaaaggtt ttggtatgcg tctgctggcg ttcgatccgt atccaagtgc agcggcgctg
     3901 gaactcggtg tggagtatgt cgatctgcca accctgttct ctgaatcaga cgttatctct
     3961 ctgcactgcc cgctgacacc ggcaaactac catctgttga acgaagccgc cttcgatcag
     4021 atgaaaaatg gcgtgatgat cgtcaatacc agtcgcggtg cattgattga ttctcaggca
     4081 gcaattgaag cgctgaaaaa tcagaaaatt ggttcgttgg gtatggacgt gtatgagaac
     4141 gaacgcgatc tgttctttga agataaatcc aacgacgtga tccaggatga cgtattccgt
     4201 cgcctgtctg cctgccacaa cgtgctgttt accgggcacc aggcattcct gacagcagaa
     4261 gctctgacca gtatttctca gactacgctg caaaacttaa gcaatctgga aaaaggcgaa
     4321 acctgcccga acgaactggt ttaatgttgc agctcccctg caatccaggg gagctgattc
     4381 agataatccc caatgacctt tcattctcta ttcttaaaat agtcctgagt cagaaactgt
     4441 aattgagaac cacaatgaag aaagtagccg cgtttgttgc gctaagcctg ctgatggcgg
     4501 gatgtgtaag taatgacaaa attgctgtta cgccagaaca gctacagcat catcgctttg
     4561 tgctggaaag cgtaaacggt aagcccgtga ccagcgataa aaatccgcca gaaatcagtt
     4621 ttggtgaaaa aatgatgatt tccggcagca tgtgtaaccg ctttagcggt gaaggcaaac
     4681 tgtctaatgg tgaactgaca gccaaagggc tggcaatgac ccgtatgatg tgcgctaacc
     4741 cgcagcttaa tgaactcgat aacaccatta gcgaaatgct gaaagaaggt gcacaagtgg
     4801 atctgaccgc gaaccagtta acgctggcga ccgcgaaaca gacattaact tataagctgg
     4861 cggatttaat gaattaatag ctgccacagc tcccggcggc aagtgactgt tcgctacagc
     4921 gtttgccgtt gggtaatgca cacatcccaa tcgccgtgcc atccagttga cgggcaacag
     4981 aaagcgaacc gccgatcatt gcacaatttg cttctccact actggacatc gacgctttta
     5041 aacctggcgc tacgtgcgcc gcagtcgcct gctgaacagg ttcactacta cacgccgaca
     5101 acaataaagc ggcacaccct acccaaaacg ctgctcgcat cttttcttcc tctgatcttc
     5161 aagccaaacg acaccgccat aaataatagg cagcacagag ggcgacatcg agagctgtcc
     5221 tgcgcgttgc cccgcatttt tactttttta tggctatttt tttgccctct gtttgatcaa
     5281 aacattcatt acgctgatgt gggggacaca aaagcgaaaa tgcagaagaa agccatttgc
     5341 taaaattgaa agattactac tgggcgcgca gcaatttcgt gcgcccctca tttgcgcaat
     5401 gtaagggtgt catatgatta ctattgacgg taatggcgcg gttgcttcgg tggcgtttcg
     5461 caccagtgaa gttatcgcca tctaccctat tacccccagt tccacgatgg cagaacaggc
     5521 tgatgcctgg gccggaaacg gcttgaagaa cgtttgggga gacacaccac gcgtggttga
     5581 aatgcagtcg gaagcgggtg ctatcgctac cgtgcatggc gctttgcaga cgggtgccct
     5641 ttcaacatcg tttacgtcat cgcagggttt gctgctgatg atcccgacac tgtacaaact
     5701 ggcaggcgaa ctcacaccgt ttgtcctgca tgtagcggca cgtaccgttg ccacacatgc
     5761 actctctatt tttggcgatc attccgacgt catggcggtg cgccagacgg gttgcgcgat
     5821 gttgtgtgcg gcaaacgtcc aggaagcgca agactttgct ctcatttcgc acatcgcgac
     5881 gctgaaaagc cgcgtgccat ttattcattt ctttgatggt ttccgcacgt cccacgaaat
     5941 caataaaatt gtcccgctgg ccgatgacac gattcttgat ctcatgccgc aggccgaaat
     6001 tgatgctcat cgcgcccggg cgctcaaccc ggaacatccg gtgatccgtg gtacgtccgc
     6061 caatcctgac tcttatttcc agtctcgcga agccaccaac ccctggtaca acgcagtcta
     6121 tgaccatgtt gaacaggcga tgaatgattt ctctgccgcg acaggtcgtc agtatcagcc
     6181 gtttgaatat tacgggcatc cgcaagctga acgggtgatt atcctgatgg gctcagccat
     6241 tggcacctgt gaagaagtgg ttgatgaatt gctaacccgt ggcgaaaaag tcggcgtgct
     6301 gaaagttcgc ctgtaccgcc ccttctcagc caaacacttg ctacaaactc taccgggatc
     6361 cgtacgcagc gtggcggtac tggacagaac caaagaaccc ggtgcccagg cagaaccgct
     6421 ctatctggat gtgatgaccg cactggcaga agcctttaat aatggcaagc gcgaaactct
     6481 gccccgtgtc attggtgggc gctatggtct ttcatccaaa gaatttggcc cggactgtgt
     6541 actggcggta tttgccgagc tcaacgcggc taaaccgaaa gcgcgcttta cggttggtat
     6601 ttacgatgat gtaaccaatc tgtccctgcc gttgccggaa aacacccagc caaactcggc
     6661 gaaacttgaa gccttgtttt atggccttgg tagtgatggc agcgtttccg cgaccaaaaa
     6721 caatatcaag attatcggta attccacgcc gtggtacgca cagggctatt ttgtttacga
     6781 ctccaaaaaa gcgggcggcc tgacggtttc tcaccttcgc gtgagcgaac agccgattcg
     6841 ttccgcttat ctcatttccc aggctgattt tgttggctgc caccagttgc agtttatcga
     6901 taaatatcag atggctgagc gtttaaaacc tggcggcatt ttcctgctca acacgccgta
     6961 cagcgcagat gaagtgtggt cgcgcttgcc gcaagaagtt caggccgtgt taaaccagaa
     7021 aaaagcgcgc ttctatgtga ttaacgcggc gaaaatcgcc cgcgaatgtg gcctggcggc
     7081 ccgtattaat accgtcatgc agatggcttt tttccatctg acgcaaattc tgcctggcga
     7141 tagcgccctc gcagaattgc agggtgcgat tgccaaaagt tacagtagca aaggccagga
     7201 tctggtggaa ggcaactggc aggctctggc gctggcgcgt gaatccgtag aagaagttcc
     7261 gttgcaaccg gtaaatccgc acagcgccaa tcgaccgcca gtggtttccg atgccgcccc
     7321 tgatttcgtg aaaaccgtaa ccgcagcgat gctcgcaggg cttggtgatg ccctccccgt
     7381 ttcggcgctg ccgccagacg gcacctggcc gatggggacc actcgctggg aaaaacgcaa
     7441 tatcgccgaa gagatcccca tctggaaaga ggaactctgt acccaatgta accactgcgt
     7501 cgccgcttgc ccacactcag ctattcgcgc aaaagtggta ccacccgaag cgatggaaaa
     7561 cgcccctgcc agcctgcatt cgctggatgt gaaatcgcgt gatatgcgcg ggcagaaata
     7621 tgtcttgcag gtggctccgg aagattgcac cggttgtaac ctgtgcgtcg aagtttgccc
     7681 ggcgaaagac cgtcagaatc cagagattaa agccatcaat atgatgtcgc gcctggaaca
     7741 tgtcgaagaa gagaaaatca attacgattt cttcctcaac ctgccagaaa tcgaccgtag
     7801 caaactggaa cgtattgata ttcgtacatc gcagctgatt acaccgctgt ttgaatattc
     7861 cggtgcttgc tccggttgtg gcgagacgcc gtatattaaa ttgctgactc agctctatgg
     7921 cgaccggatg ttgatcgcta acgccaccgg ctgttcttca atttatggcg gtaacctgcc
     7981 ctctacaccg tataccaccg atgccaacgg tcgtgggccg gcatgggcga actctctatt
     8041 tgaagataat gccgaatttg gccttggttt ccgcctgacg gtcgatcaac accgtgtccg
     8101 cgtgctgcgt ctgctggatc aatttgccga taaaatcccg gcggaattac tgacggcgtt
     8161 gaaatcagac gctacgccag aggttcgtcg agaacaggtc gcagctttac gccagcaact
     8221 caacgatgtt gccgaagcac atgaactgct acgtgatgca gatgcactgg tggaaaaatc
     8281 aatctggctg attggtggtg atggctgggc ttacgatatc ggctttggcg gtctggatca
     8341 tgtattgagt ttgacggaaa acgtcaacat tctggtgctg gatacgcaat gctattccaa
     8401 caccggtggt caggcgtcga aagcgacacc gctgggtgca gtaactaaat ttggcgagca
     8461 cggcaaacgt aaagcgcgta aagatcttgg cgtcagtatg atgatgtacg gtcatgttta
     8521 tgtggcgcag atttctctcg gcgcgcagct gaatcagacg gtgaaagcga ttcaggaagc
     8581 ggaagcgtat ccgggaccat cgctgatcat tgcttatagc ccgtgtgaag agcatggtta
     8641 cgatctggca ctcagccatg accagatgcg ccaactcaca gctaccggct tctggccgct
     8701 atatcgcttc gatcctcgtc gtgccgatga aggcaaactg ccgctggcgc tggattcacg
     8761 cccgccgtca gaagcactgg aagaaacgtt acttcacgag caacgtttcc gtcgtctgaa
     8821 ttcgcagcag ccagaagtgg cagaacagtt atggaaagat gctgcagctg atttgcaaaa
     8881 acgctatgac ttcctggcac aaatggccgg aaaagcggaa aaaagcaaca ccgattaaat
     8941 gctctggata aggattatcc aattctaaaa aaaagcccgg acgactgttc gggcttgtct
     9001 ttttatatgt tggaaaatca gtggcaatgc aatggcccaa cagaaaataa aatctgtgac
     9061 aataaaggca tataacccgc gcagaataac gtatagaaaa ttaaaagtat aatttttatt
     9121 ttgtatgtat tatcttcgat acattcacca gacttattat catttcagaa gaattatttg
     9181 attaaggttt tacttaaggc gtaacaaatg atatttatcg gctaactgaa cttctccttt
     9241 aggatgtttt cactccccgg aatggggata aaaggcaaat aaaataacta aaggatttat
     9301 tcaatgaaaa gcaaagtact ggcactttta attcctgccc tgctcgccgc aggtgctgca
     9361 catgcagccg aagtttataa taaagacggc aacaaattag atctgtatgg caaagttgat
     9421 ggcctgcatt atttttctga taattcagcg aaagatggcg atcagagcta tgcgcgtctg
     9481 ggttttaaag gcgaaaccca aattaacgat caactcactg gctacggtca atgggaatac
     9541 aatattcaag caaacaacac tgaatcttca aaaaaccagt catggacccg tctggcattt
     9601 gccgggctga aatttgcaga ttacggttct ttcgattacg gacgtaatta tggcgtaatg
     9661 tacgacatcg aaggctggac cgatatgctg cctgaatttg gcggtgactc ttataccaat
     9721 gcagacaact ttatgactgg tcgagccaat ggcgtcgcga cttatcgtaa tactgatttc
     9781 ttcggtctgg taaatggtct gaacttcgcg gtgcagtatc aaggtaacaa cgaaggagcc
     9841 agtaatggtc aggaaggcac caacaacgga cgtgatgttc gccatgaaaa cggtgacggc
     9901 tggggttttt ccacaacata tgatttaggc atgggcttta gcgctggtgc ggcatacacc
     9961 tcttctgacc gcaccaatga ccaggttaac catactgcgg cgggtggtga taaagcagac
    10021 gcgtggactg ctgggctaaa atacgatgct aacaatattt acctggcaac catgtattca
    10081 gaaacgcgta atatgacccc gtttggcgac agcgattatg ctgtggcaaa caaaacccag
    10141 aattttgaag tcactgccca gtaccagttt gattttggtc tgcgtccggc agtctctttc
    10201 ctgatgtcta aaggccgtga cctgcacgct gccggtggtg cagacaaccc ggcaggtgtt
    10261 gatgataaag atctggttaa atacgccgat gttggcgcga cttactattt caataaaaac
    10321 atgtccacct acgttgacta taaaatcaac ctgttggatg aagatgacag cttctacgct
    10381 gccaatggca tctctaccga tgatattgtc gctttaggtc tggtttatca gttctaaatc
    10441 ctcctgcccg ctgttatggc gggctttttc tgcttattct tcctcctttg atctaaatta
    10501 aaaatgtgaa ctccatcatt acacaaaaag tgtcatctgg cgttacactt tatgcggata
    10561 ctaaaacagg aggttttatg aacagaacga ttcttgtccc tatcgatatt tccgattcag
    10621 aattaactca acgcgtgatt agccacgttg aggcagaggc aaagattgac gatgcagagg
    10681 ttcatttcct gacggtaata ccttcactgc cctactatgc ctctctgggt ttagcgtatt
    10741 ccgcagaatt accggcaatg gatgacctga aagcggaagc caaatcgcaa ctggaagaga
    10801 tcattaaaaa atttaaactg ccaaccgaca gagtgcatgt ccatgttgag gaaggctcgc
    10861 ccaaagaccg cattctggaa ttggcgaaga agatccccgc tcatatgatc atcattgctt
    10921 cccatcgacc ggatatcacc acttatctgc tcggttccaa cgccgcagct gtagtgcgtc
    10981 acgcagagtg ctccgtgctg gttgtgcgct gacactaacg cccgcacatt gctgcgggct
    11041 ttttgattca tttcgcaaat gtgctgacat tttcccctct aatccgtacc atacacgcca
    11101 ctgtttttat atcagatttc ttatgctggg cattccggca tgacgcatac tcttctgatg
    11161 ccatataacg aattgagtcg cttttaaatg tcgcaaaatc aagaatttag taagaaagaa
    11221 caatacaacc tgaacaagta agggcaaaaa tcacaactat ctgactcata agtattttat
    11281 ttatttttca atatgttaaa cattatcagc gacaacaata agctacgata acccactctt
    11341 tttttgcccc atttttgcca tcaacaattt tcctcataaa gtcatttcaa agcctaatag
    11401 ctgctctact tttttcctca atatcatgtc gccagcagga aacaacctaa tccctgtttt
    11461 aggcctcaaa gctgttaatg ataattattt tcattttgta taggttatgc tataaaacat
    11521 agccgttgct atgtttgttc taattttgct cactataggt actaaattat gcactcaata
    11581 aaaaaagtaa ccatgctctt ggggtgcctc gccctcacct gctcgatcgc atttcaggca
    11641 agtgcaactg aaaaattcaa ggtcattaca acatttacca tcatcgcgga tatggccaaa
    11701 aacgtggctg gagatgctgc agaagtctca tccataacca agcctggtgc agaaattcat
    11761 gagtatcagc ctacccctgg cgatattaaa cgtgcacagg gggcacaact gattctcgcc
    11821 aatggtatga atctggaatt gtggttccaa cgcttttacc agcatctcaa tggggttcca
    11881 gaagtaattg tctcttcggg tgtgacgcca gtagggatca ccgaaggacc ctatgagggc
    11941 aaacctaatc cccatgcatg gatgtcgcca gataatgctc tgatttacgt cgataatatt
    12001 cgtgatgcgt tgataaaata cgatccggca aatgcacaaa cctaccaacg taatgccgat
    12061 acttataaag ccaagattac ccaaaccctt gcccccctgc gtaagcagat tacggaactc
    12121 cctgagaatc agcgatggat ggtcaccagt gaaggggctt tttcttatct cgcacgcgat
    12181 ttggggctaa aagagcttta tctgtggccg attaatgccg atcaacaagg aacaccgcag
    12241 caggtacgta aggttgttga tatagttaag aaaaatcata tcccggcagt ctttagcgag
    12301 agtacgattt ccgataaacc agcgcgtcag gttgcgcgtg aaaccggcgc acactacggc
    12361 ggtgtgctct atgtcgattc cctgagcaca gaaaacggcc cggtacctac gtatatcgac
    12421 cttcttaagg ttactaccag tacgctggta cagggaatta aagccgggaa aagggagaaa
    12481 taatgatgca atctgcaggc attgtcgtta atgatgttac tgtcacctgg cgtaacgggc
    12541 acacagcact gcgcgatgca tccttcacag taccaagtgg atctattgcc gctctggttg
    12601 gggtaaacgg ttccggaaaa tcgacgttgt ttaaagcgat tatgggattt gtgcgtctga
    12661 ccagcggaaa gatatctgtt ctgggtattc ccacgcgaca ggcgctacag aaaaacctgg
    12721 ttgcctacgt ccctcagtca gaagaggttg actggtcatt tcctgtactg gtggaagatg
    12781 tggtgatgat gggccgctat gggtatatgg gtatgttgcg tatagccaaa aagagggatc
    12841 gtcagattgt caccgatgcg ctggaacgtg tcgatatggt ggattttcgc catcgtcaaa
    12901 tcggcgagct ttccggtgga caaaagaaac gcgtctttct ggcgagagcg attgcacagc
    12961 agggtgatgt gatcctgctg gatgaacctt ttaccggcgt tgatgtgaaa accgaagcga
    13021 aaatcatcag cctgttgagg gagttacgcg cggaaggcaa aacgatgctt gtctcaacgc
    13081 acaatctcgg ctcagtcacg acattttgcg attatacggt catggtcaaa ggcaccgtcc
    13141 tggcaagcgg gccgacagac accactttta cagccgagaa cctggagctg gcttttagcg
    13201 gcgtactgcg ccatgtcaca cttaacggct cggaagaaag cattattact gacgatgaac
    13261 gcccttttgt ggcacatcga ccgtcagcgg tgcagaggga agcaagatga acgtgctact
    13321 ggaacccttc agctatgaat atatgctcaa tgcgatgtgg gtctcggcaa tggtcggcgg
    13381 tctctgcgct ttcctgtcat gctatctgat gctaaaaggc tggtcgctga ttggcgatgc
    13441 gctgtcgcac tctattgtcc cgggtgttgc gggggcatat atgctggggc ttccgttttc
    13501 tctgggagcc ttcttttccg gcggactggc agcgggcagc atgctgtttc ttaaccaacg
    13561 cacccgctta aaagaagatg ccatcatcgg cctgatcttc tcgtcctttt ttggcctggg
    13621 gctgtttatg gtgtcattga acccgacatc cgtgaacatt cagaccatcg tcctgggcaa
    13681 tattctggca atcgatccgg cggatatcct gcaactcact atcattggca ttctctcgat
    13741 catcgtgctt tttttcaaat ggaaagatct tatggtgacc tttttcgacg agaatcacgc
    13801 ccgtgctatt ggattacatc cgggcagatt aaaaatcctc ttcttcaccc tgctgtcggt
    13861 ttcgaccgtt gcggcgctgc aaacggttgg tgcctttctg gtgatctgtc tggtggtgac
    13921 tcccggtgca acagcatggt tgttaaccga tcgttttccc cgcctgctca taattgctgt
    13981 aactattggc agtgtaacca gtttcctcgg cgcgtgggtc agttactttc tggacggcgc
    14041 gacaggtgga atcatcgtgg tggcgcagac actgctgttt cttttagcat ttgtatttgc
    14101 gcccacccat ggacttttgg caaatcgtcg gcgtgcgcat aaagcgctgg aggatcgctc
    14161 atgatggcat tattactgga gccactgcag ttcaccttta tgagtcacgc actgctgatt
    14221 tcactggtag tttccatacc ctgtgcgctg ctgtcggtct ttctggtcct gaaaggttgg
    14281 gcactgatgg gtgacgcgat gagtcatgcg gtttttcctg gcatcgtgct tacctggatt
    14341 ctggggttac ctctggctac aggggcattc gtcgccggag tattctgcgc ggtggcgacg
    14401 ggatacctga aagacaacag ccgaatcaag caagatacag ttatggggat tgttttttct
    14461 ggcatgtttg ccgcaggtct gatcttgtat attgcaatca aaccagacgt acatcttgac
    14521 catattcttt tcggcgacat gctcgggata accatcggcg atataatcca gacggtgatt
    14581 attgccgggc tggttacact tgttattagc gtaaaatggc gggatttttt gctgttcagc
    14641 tttgattatc aacaggcgca ggtaagcggt ttgcatacga gatggctgca ttatgggctg
    14701 ctgtgcatgg tttccctgac cattgtggcg acgctgaaag cagtaggtat cattctctct
    14761 atttctctgc tcattgcgcc tggcgccatt gcagtactcc tgacacaacg ctttcatatt
    14821 gcgctcctac tggcgactgg catatcggta atagtgtcaa tgactggtgt ctggctgtcc
    14881 ttttttatcg acagcgcacc agctccgacg attgtcgtct tattcgcggt cgtgttcatc
    14941 atgacgttta ccgttaccag catcaacgca cgcacaaagg gaaacgccca tacacaggat
    15001 ctgttatcac ccaattagca caatatccga ggacagcatc gtccgccagc gtccgccagc
    15061 ctacagaagt tcggaaagcc atggaaggtc gttgggagga ggtacgaatt ctatcatgca
    15121 aaaaatacgt aaaatcgata acgcct
//
LOCUS       DAJVUP010000101        14940 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.101, whole genome shotgun sequence.
ACCESSION   DAJVUP010000101 DAJVUP010000000
VERSION     DAJVUP010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14940
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.101"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..303)
                     /gene="hlyE"
                     /locus_tag="OQQ75_002778"
     CDS             complement(<1..303)
                     /gene="hlyE"
                     /locus_tag="OQQ75_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin HlyE"
                     /protein_id="HCS1977041.1"
                     /translation="MTEIVADKMVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETI
                     KELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLF"
     gene            676..1095
                     /locus_tag="OQQ75_002779"
     CDS             676..1095
                     /locus_tag="OQQ75_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS1977042.1"
                     /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL
                     IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR
                     PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR"
     gene            1095..2362
                     /gene="umuC"
                     /locus_tag="OQQ75_002780"
                     /pseudo
     CDS             1095..2362
                     /gene="umuC"
                     /locus_tag="OQQ75_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase V catalytic protein"
     gene            complement(2408..2938)
                     /gene="dsbB"
                     /locus_tag="OQQ75_002781"
     CDS             complement(2408..2938)
                     /gene="dsbB"
                     /locus_tag="OQQ75_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HCS1977043.1"
                     /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC
                     IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA
                     TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLV
                     MISQPFKAKKRDLFGR"
     gene            complement(3084..4625)
                     /gene="nhaB"
                     /locus_tag="OQQ75_002782"
     CDS             complement(3084..4625)
                     /gene="nhaB"
                     /locus_tag="OQQ75_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter NhaB"
                     /protein_id="HCS1977044.1"
                     /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG
                     WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM
                     VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG
                     FYGIYHRVASSRTEDTDLQDDSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTM
                     VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV
                     REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL
                     TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF
                     YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN
                     GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG
                     WIATL"
     gene            4847..5566
                     /gene="fadR"
                     /locus_tag="OQQ75_002783"
     CDS             4847..5566
                     /gene="fadR"
                     /locus_tag="OQQ75_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HCS1977045.1"
                     /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT
                     RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL
                     SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI
                     YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE
                     SGEIWHRMQKNLPGDLAIQGR"
     gene            complement(5618..7150)
                     /locus_tag="OQQ75_002784"
     CDS             complement(5618..7150)
                     /locus_tag="OQQ75_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HCS1977046.1"
                     /translation="MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTY
                     PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP
                     CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC
                     EERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR
                     TLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQK
                     QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP
                     YALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK
                     VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLR
                     GDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMG
                     NL"
     gene            7480..8778
                     /gene="dadA"
                     /locus_tag="OQQ75_002785"
     CDS             7480..8778
                     /gene="dadA"
                     /locus_tag="OQQ75_002785"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HCS1977047.1"
                     /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA
                     GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM
                     ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDA
                     GVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF
                     RFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS
                     LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV
                     VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQ
                     LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS"
     gene            8788..9847
                     /gene="dadX"
                     /locus_tag="OQQ75_002786"
                     /pseudo
     CDS             8788..9847
                     /gene="dadX"
                     /locus_tag="OQQ75_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309712.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catabolic alanine racemase DadX"
     gene            complement(10234..11970)
                     /locus_tag="OQQ75_002787"
     CDS             complement(10234..11970)
                     /locus_tag="OQQ75_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HCS1977048.1"
                     /translation="MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML
                     AGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI
                     TSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS
                     NDPMAVFLTITLIAMIQQHESSVSWMFVVDILQQFGLGIVIGLGGGYLLLQMINRIAL
                     PAGLYPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW
                     LAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERV
                     FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKV
                     VVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPKETRIAALFRDN
                     QLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALDQRFFGDFILEASAKYA
                     DVALIYGLEDGREYRDKQQTLGEIVQQLLGTAPVVGDQVEFAGMIWTVAEKEDNEVLK
                     IGVRVAEEEAES"
     gene            complement(12065..12979)
                     /gene="ldcA"
                     /locus_tag="OQQ75_002788"
     CDS             complement(12065..12979)
                     /gene="ldcA"
                     /locus_tag="OQQ75_002788"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muramoyltetrapeptide carboxypeptidase"
                     /protein_id="HCS1977049.1"
                     /translation="MSLFHLIAPSGYSIKQHAALRGIQRLTDAGHQVNNVEVIARRCE
                     RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLI
                     CGHSDFTAIQCGLLAQGNVITFSGPMLVANFGADELNAFTEHHFWLALRNKTFTIEWQ
                     GEGPTCQTEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYH
                     AGILPRQKAIILGSFSGSTPNDYDAGYNLESVSAFLRSRLSIPLITGLDFGHEQRTVT
                     LPLGAHAILNNTREGTQLTISGHPVLKM"
     gene            13079..13690
                     /gene="emtA"
                     /locus_tag="OQQ75_002789"
     CDS             13079..13690
                     /gene="emtA"
                     /locus_tag="OQQ75_002789"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309714.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     EmtA"
                     /protein_id="HCS1977050.1"
                     /translation="MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQ
                     KAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP
                     TTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSD
                     RKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDAM"
     gene            complement(13692..14426)
                     /locus_tag="OQQ75_002790"
     CDS             complement(13692..14426)
                     /locus_tag="OQQ75_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar brake protein"
                     /protein_id="HCS1977051.1"
                     /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKIL
                     AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT
                     VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP
                     AELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSP
                     TVERQLQRIIFSLEREAREKADKVRD"
     gene            14627..14881
                     /locus_tag="OQQ75_002791"
     CDS             14627..14881
                     /locus_tag="OQQ75_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1977052.1"
                     /translation="MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGG
                     WLATMFGIGGSISGFNLHSFLVAVVGAILVLGLFRLLRRE"
BASE COUNT         3810 a         3711 c         3874 g         3545 t
ORIGIN      
        1 aaatagcaaa atatacgctg cgagcaattg cgtcgcaaca ccacaccatt catacactgt
       61 ttgggttgct tcaaaatact tatcctggct atccataagt aaggttttaa tatcgccgac
      121 taaaacggag gctgcctgtg aatactcctg tttaaagcga cttaactctt ttatggtttc
      181 atcaaaggtc tgccagggga tgacctgatc gagatattta ttataaagat ctaatgctcc
      241 atctgcggtt tcgattgcgt ttttaactac ttctaccatt ttatctgcaa cgatttcagt
      301 cataatcatt cgcctcttta aatatataaa ttgtaatgaa actcctgttt tacaactatt
      361 aataaatttt acttcatcta attcatagtt agccgggtgg gatgcgtcaa tgtctttatt
      421 tctattaata tgataaatat caaacaatgt ttaatgtcat tatggcgaat gcttctattc
      481 tatttttttg ccgggtgata tttttcattt ctgctggatg agcgtcgtcg ccagaaggcc
      541 acgtgagcac aggataagag aacgaaaaat cagcagtcta tacagcgaca aatattgata
      601 gcctgaatca gtattgatct gctggcaaga atagactact gtatataaaa acagtataac
      661 ttcaggcaga ttattatgtt gtttatcaag cctgcggatc tccgcgaaat tgtgactttt
      721 ccgctattta gcgatcttgt tcagtgtggc tttccttcac cggcagcaga ttacgtcgaa
      781 cagcgcatcg atctgaatca actgttgatc cagcatccca gcgcgactta cttcgtcaaa
      841 gcaagtggtg attctatgat tgatggtgga attagtgacg gtgatttact gattgtcgat
      901 agcgctatta ccgccagcca tggtgatatt gtcatcgctg ctgttgacgg cgagtttacg
      961 gtgaaaaaat tgcaactacg cccgacggta cagcttattc ccatgaacag tgcgtactcg
     1021 cccattacca tcagtagcga agatacgctg gatgtctttg gtgtggtgat ccacgtcgtt
     1081 aaggcgatgc gctgatgttt gctctctgtg atgtaaacgc gttttatgcc agctgtgaga
     1141 cggtgtttcg ccctgattta tggggtaaac cggtggttgt actatcgaat aatgacggtt
     1201 gcgttatcgc ccgaaacgct gaggcaaagg cgctgggtgt taaaatgggc gatccctggt
     1261 tcaaacaaaa agatctgttt cgtcgctgtg gtgtggtttg ctttagcagc aattatgagc
     1321 tttacgcaga catgagcaat cgggttatgt cgacgctgga agaactatcg ccccgcgtcg
     1381 agatttacag tattgatgag gcattctgcg atctgacagg tgtgcgtaat tgtcgcgatc
     1441 tgactgattt tggcagagaa attcgcgcaa cggtgctaca acgtacccat cttactgttg
     1501 gtgtggggat cgcccagacc aaaacgctgg ctaagcttgc caatcatgcg gcaaaaaaat
     1561 ggcagcggca gacggggggg tggtggattt atcaaatctg gaacgccagc gtaaattaat
     1621 gtctgctctc cccgtggatg acgtctgggg gattggacgg cggatcagca aaaaactgga
     1681 cgcgatgggg atcaaaaccg ttcttgattt ggcggataca gatatccggt ttatccgtaa
     1741 acattttaat gtcgtgctcg aaagaacggt gcgtgaactg cgcggtgaac cctgtttgca
     1801 actggaagaa tttgcaccga caaagcagga aattatctgt tcccgctcgt ttggtgaacg
     1861 tatcacggat tatacgtcga tgcggcaggc catttgtagt tacgctgccc gggcggcgga
     1921 aaaacttcgc agtgagcatc aatattgtcg gtttatctcc acatttatta agacgtcacc
     1981 atttgcgctc aatgaacctt attacggcaa tagcgcgtcg gtaaaactgc tgacgcccac
     2041 tcaggacagc agggatatca ttaacgccgc tacgcgatct ctggatgcca tctggcaagc
     2101 gggccatcgc taccaaaaag cgggcgtgat gctgggggat ttcttcagtc agggagtcgc
     2161 gcagctcaat ttattcgatg acaacgcacc gcgccccggg agtgagcaat tgatgacggt
     2221 aatggataca ctgaatgcta aagagggcag aggaacactc tattttgccg ggcaggggat
     2281 ccaacaacaa tggcagatga agcgagccat gctttcacca cgttatacaa cgcgaagttc
     2341 tgatttactg cgggtcaaat aaatatagcg gcaggaaaaa agtgctcccg caggagcgcc
     2401 gaatggatta gcgaccgaac agatcacgtt ttttcgcttt aaacggctgg gaaatcatca
     2461 ccagcaccgc gacaatcagg taagcgataa aaataccgag cagccactgc ggcatttcca
     2521 gacctaaaaa atcccactga cgctcggcgc aatcgccaga ggcgacaaac acttgcggca
     2581 cccatttatc cagcggcagc cattccggga aacgaaccat aaaatcacag gtggcaaacg
     2641 gcgaaggata gagctgaagc atggtgtgct cgtaagttaa ctgcacaccg cggaacgcac
     2701 tatacaacca gataaccatc gctacataac gcagcggagt tttcggggcg atcgcgccaa
     2761 tcagcgcagc acccagaacg ccgaataacg cgcagcgttc ataaatacag agcacgcaag
     2821 gtttcagtaa catcacatgc tggaaccaca gcgccgtcag ttccagtgcc agagcagtaa
     2881 acgccatcaa cagccacgcg ccccggcctt gtgaacattg gttcaaaaat cgcaacataa
     2941 tcatttccct gcaatatgca tagagtgcgc agtttaaacc aattcattcg ctgcgccacc
     3001 aggaggcagc aaaaatagga cgcaattgga caattatcgg gcgaaaaggc aaaccgggca
     3061 tttatatgcc cggtaagttg ttatcaaagc gttgctatcc agcccatttg cataaaccat
     3121 tcggttacag gggcaagcgt aaactcgacg cagagcagcc cgacgagtgt caggacgagg
     3181 gtgtaaggca gggccatcca caccatgcgg ccataagaga ggcgaatcaa tggcgcgagt
     3241 gcagaggtca gcaggaacag gaacgcagcc tgaccgttcg gcgtagcgac agagggcaga
     3301 ttggtaccgg tattaatggc gaccgccagc agctcgtatt gcttcaacgt gatagcgcca
     3361 ctttccattg ccgctttcgc ttcgttgata taaatcgtcc ccacgaagac gttatccgaa
     3421 atggatgaca gcagaccgtt gaaaatatag aacaacgaca gctgagcatg ttccgatgcc
     3481 tgcaacacaa actgaataat cggcgaaaac agttgttggt cgataatcac cgcgactacc
     3541 gagaaaaaca ccgtcaacag tgcggtgaat ggcagagatt cggtgaaggc tttaccgata
     3601 gcatgttcat cggtgacacc ggtcaatgat gtcgccagaa taatgaccga caaaccaatc
     3661 aagccaacct ccgccagatg caacgccagc gcagtcacca gccagacgcc gataatcgcc
     3721 tggacaatca gacggatttt atcctgacgg gtacgctggt ggcggctttg atcgtcaaac
     3781 tgttgcaaca cttcgcggac tttctccggc agcgtttcac cgtagccaaa ccaacgcagc
     3841 ttctctacca gcaggcaggt taacaggcca caaatcagaa ccggaacggt caccggcgac
     3901 atgcgcagga agaaatcgcc aaaatgccag ccagccgctt tagcgatgat caggttctgt
     3961 ggttcgccca ccatggtcat tacgccgcct aatgcggtgc cgacaccggc atgcatcatc
     4021 aggctacgca gaaagccacg gaactgttcc agaaccactt tgtaatgctt gtcgatatga
     4081 ctatcgtctt gcaggtcggt atcttcagta cgggaagagg ctacgcggtg ataaatacca
     4141 taaaaaccga ctgcaacgct gatcaccacc gccacgacgg ttaaggcatc gaggaacgcg
     4201 gagaggaacg ccgccgccac gcaaaaagag agcgacagca gcattttgga acgaatgctt
     4261 aacagcaaac gggtaaatat gaacagcaat agctgtttca taaaatagat acccgccacc
     4321 ataaacatca gtaacagcaa gacttcaaga tttgccgcca cctcttcacg gacgtgttcc
     4381 gcgctggtca tgccgatgaa taccgcttca atagccaaca gaccaccggg gagtagcggg
     4441 tagcatttca gggccatcgc cagagtgaaa ataaattccg ctaccagcaa ccagccagcg
     4501 acgaaagggc tgatgaggaa aattaacgga tttacgatta agaaaatgat gagggcgagt
     4561 ttgtaccagt cgggggactg gcccaaaaaa ttgcgccata gcgcgcggcc ccaggagatc
     4621 tccatgatgg tttcccttac cttacaaata atcaatgatg tttttatgtt taaacgcaaa
     4681 gcttaacggt caggcaggag tgaggcaagt cttgatagtc aaggggaaag agatgcggaa
     4741 aatgaagcct tgatcccttt tttcttcttt ttgtctgcta tcagcgtagt tagccctctg
     4801 gtatgatgag tccaactttg ttttgctgtg ttatggaaat ctcactatgg tcattaaggc
     4861 gcaaagcccg gcgggtttcg cggaagagta cattattgaa agtatctgga ataaccgctt
     4921 ccctcccggg actattttgc ccgcagaacg tgaactttca gaattaattg gcgtaacgcg
     4981 tactacgtta cgtgaagtgt tacagcgtct ggcacgagat ggctggttga ccattcaaca
     5041 tggcaagccg acgaaggtga ataatttctg ggaaacctct ggtttaaata tccttgaaac
     5101 actggcgcga ctggatcacg aaagtgtgcc gcagcttatt gataatttgc tgtcggtgcg
     5161 taccaatatt tccactattt ttattcgcac cgcgtttcgt cagcatcccg ataaagcgca
     5221 ggaagtgctg gctaccgcta atgaagtggc cgatcacgcc gatgcctttg ccgagctgga
     5281 ttacaacata ttccgcggcc tggcgtttgc ttccggcaac ccgatttacg gtctgatcct
     5341 taacgggatg aaagggctgt atacgcgcat tggtcgtcac tatttcgcca atccggaagc
     5401 gcgcagtctg gcgctgggct tctaccacaa actgtcggcg ttgtgcagtg aaggcgcgca
     5461 cgatcaggtg tacgaaacag tgcgtcgcta tgggcatgag agtggcgaga tttggcaccg
     5521 gatgcagaaa aatctgccgg gtgatttagc cattcagggg cgataatccc ttccgtttaa
     5581 aaagcaaacc cctcaaacga ggggtttttt gttgttttta cagatttccc attcttggcg
     5641 ggcaacgttc cagcaactcg acgctgccat cttcgttttg ctgttccagc atcacatcaa
     5701 atccccacag gcgatgcaca tgcttcagca cttctttgcg cccccgatcc agcggtgcgc
     5761 gattatgtgg aatgtaacgc agcgtcagcg aacggtcgcc gcgcaaatcc acgttccaga
     5821 tctgaatatt cggctccaga ttacttaagt tatattgcga cgataaccgg ttacggatct
     5881 cccgataacc ttcttcatta tgaatagcgg aaatctccag ataattatgc cgatcgtcat
     5941 ccagcacggt gaagaagcgg aaatcacgca tcactttcgg tgacagaaac tggctgataa
     6001 aactctcatc tttgaaatca cgcatcgcga aatgcagcgt ttccagccag tcggaaccgg
     6061 cgatatccgg gaaccagtat ttgtcttctt ccgttggcga ctgacaaatc cgtttaatat
     6121 cctggaacat ggcgaacccg agggcatacg ggttgatgcc gctgtaccac gggctgttat
     6181 aggggggctg gaagaccaca ttggtgtggc tgtgcaaaaa ctccagcata aaacgttccg
     6241 ttactttccc ttcatcatac agatggttaa ggatggtgta gtgccagaag gtggcccagc
     6301 cttcgttcat cacctgagtc tgtttttgcg gataaaaata ctggctcacc ttacgcacaa
     6361 tacgcaggat ttcacgctgc catgattcca gcagtggcgc atttttctcc ataaaataga
     6421 gcaggttttc ttgtggttcg gacggatagc ggcgcgcttc agcaaccgtt ttctcttcct
     6481 cgcgcttcgg cagggtacgc cagagcatat tgacctgact ttgtagatac tcttcgcgac
     6541 ttttctgccg ggctttctct tcttgcagcg agattttttg cgggcgtttg taccggtcca
     6601 cgccgtagtt catcagcgcg tggcacgagt ccagaagccg ttctacttca tccacgccat
     6661 aacgttcttc gcactcggta atatatttac gggcaaaaat cagataatcg acaatcgaac
     6721 tggcgtcggt ccaactgcgg aataagtaat tgtttttaaa gaaagagtta tgcccatagc
     6781 aggcgtgtgc catcaccagc gcttgcatgg taatggtgtt ctcttccatc aggtaagcga
     6841 tacacgggtt agagttaatg acgatttcat aggccagtcc ttgctgaccg tgcttataca
     6901 gccgttcagt ctcgataaac tttttaccga atgaccagtg cggatagtta attggcatgc
     6961 cgacgctgga gtaggcatcc atcatctgtt ctgaggttat cacttcaatc tggtgcgggt
     7021 aggtatccag ccggtagagt ttcgccaccc ggtctatctc tgccagataa acatccagca
     7081 ggtcgaacgt ccagtcgggt ccatcgctca accgtgtggt gtccttattc atagaatcga
     7141 tcgtcgccat acgcgcacct cattgttgtc ggcgctctct gtgtggagca cctcatttca
     7201 agcatagaac acctgttaaa aaccgcgtcg ccggagaatt tttttctttg cgatttctta
     7261 ttatcagagt gccactaatc cgcttctgaa cggaatttta tgctggataa aaagggcgtt
     7321 cagcaggaga tactaaagac gccatattgc cgcagagtca gggagatgtg agccagctca
     7381 ccataaaaaa gctgtatgtt gaataatatt ttcaactgag ttatcaagat gtaattagat
     7441 tattattctt ttactgtatc taccgttatc ggagtggcta tgcgagttgt catactggga
     7501 agtggtgtgg taggcgttgc cagcgcctgg tacttaaatc aggcaggaca tgaggtcacc
     7561 gtcattgatc gggagccggg ggccgccctg gaaaccagcg ccgcgaatgc cgggcaaatc
     7621 tcccccggat atgctgcacc gtgggcggca ccaggtgtgc ctttaaaagc gatcaaatgg
     7681 atgttccagc gccatgcgcc gctggcggtt cgtctcgacg gtacgcagtt tcagttgaaa
     7741 tggatgtggc aaatgttacg taactgcgac accagccact acatggaaaa caaagggcgg
     7801 atggtgcgtc tggcggaata cagccgtgat tgcctgaaag cattgcgcgc cgaaaccaat
     7861 attcagtatg aagggcgtca gggtgggacg ctgcaactgt tccgtaccga acaacagtat
     7921 gaaaatgcga cccgcgatat cgccgtgctg gaagatgccg gcgtaccgta tcagctgctg
     7981 gaatccagcc gcctggcgga agtggagcca gcgctggcag aagtagcgca caaactgacg
     8041 ggtggtctgc aactgcccaa tgatgaaacc ggagactgcc agctgtttac ccagaatctg
     8101 gcgcggatgg cagagcaggc gggggttaaa ttccgcttta atacgcccgt tgaccaactg
     8161 ctttgcgacg gcgagcaaat ctacggcgtg aagtgtggcg atgaagtgat taaggccgat
     8221 gcgtatgtga tggcgtttgg ttcttactcg acggcgatgc tcaaaggcat tgttgatatt
     8281 ccggtgtatc cgctgaaagg ctactcgctg actattccaa ttgcgcagga agatggtgcg
     8341 ccagtatcca ccattcttga tgaaacctac aaaatcgcca ttacccgttt cgataaccgc
     8401 attcgtgttg gcggaatggc ggaaattgtt ggttttaaca ccgagctgtt gcaaccgcgt
     8461 cgtgaaacgc tggaaatggt ggttcgcgat ctctatccac gcggcggtca tgtcgagcag
     8521 gcgactttct ggacgggttt gcgcccgatg acgccagacg gtacgccggt tgtcgggcgt
     8581 acacgcttta aaaatctgtg gctgaatacc ggtcacggca cgctcggctg gacgatggct
     8641 tgcggttccg gtcagttgtt aagcgatctg ctctctggtc gcacgccagc gatcccatat
     8701 gaggatctaa gcgtagcgcg ctacagccgt ggatttacgc catcacgtcc gggccattta
     8761 catggcgcac acagctaagg aaacgagatg acccgtccga tacaggccag cctcgatctg
     8821 caggcattaa aacagaatct gtccattgtc cgccaggccg cgccgcacgc gggtggtaaa
     8881 agcgaacgct tacgggcatg gtattgagcg tatctggagc gcgctcgggg ccaccgatgg
     8941 ctttgcatta cttaacctgg aagaggcaat aacgttacgt gagcgcggct ggaaggggcc
     9001 gatcctgatg ctggaaggat ttttccatgc tcaggatctg gagatttatg accagcaccg
     9061 cctgaccacc tgcgtacaca gcaactggca gctcaaagca ctgcaaaatg cgcggctaaa
     9121 agcaccgttg gatatttatc ttaaagtgaa cagtgggatg aatcggttgg gcttccagcc
     9181 cgatcgcgtg cttaccgtct ggcagcagtt gcgggcaatg gcgaatgttg gcgagatgat
     9241 cctgatgtcg cattttgccg aagcggaaca tcctgatgga atttccagcg cgatggcgcg
     9301 tattgagcag gcggcggaag ggctggagtg tcggcgttcg ttgtccaatt cggcggcgac
     9361 tctgtggcac ccggaagcgc attttgactg ggttcggcct ggcattattt tgtatggcgc
     9421 ttcgccgtcc ggtcagtggc gtgatatcgc caataccgga ttacgtccgg tgatgacgct
     9481 aagcagtgag attattggtg tccagacgct aaaagcgggt gagcgtgtgg gctacggcgg
     9541 tcgctatact gcgcgcgatg aacagcgaat cggcattgtc gccgcagggt acgccgacgg
     9601 ttatccgcgc cacgcgccta ccggtacccc tgttttagtg gacggcgtgc gcaccatgac
     9661 ggtggggacc gtctcgatgg atatgctggc ggtcgattta acgccttgcc cgcaggcggg
     9721 tattggtacg ccggttgagc tgtggggcaa ggagatcaaa attgatgatg tcgccgccgc
     9781 tgccggaacg gtgggctatg agttgatgtg cgcgctggcg ctacgcgtcc cggttgtgac
     9841 ggtgtaactt gttgtaagcc ggatcggagg caacgtcttc tgggtgcaaa aaaaatcatc
     9901 catccggctg gtcagcaact gtagttgtta atgtgacaga gccattgccc atgatagtgt
     9961 ccattaaaag gatggacact atttccccgg aacctgaact caccgcacag gcgttctaca
    10021 taaaacgctt acgcttcatt gttgactcgg agtcgacttc agataaatca cgctttaccc
    10081 ttgatggagc ctgtacatag atttgtgtaa ttgcctgatt ttgatatgtt caattcaaca
    10141 tcaaatgaag gttaaattat ggacgacaaa caattgcagg ctcaggctgc gttcagcaaa
    10201 gcatcgcaac cggcgataga tgcttcatta aatttaagat tcagcttcct cttcagccac
    10261 ccgtacgcca atcttcaaca cttcattatc ttctttctcg gccaccgtcc agatcatccc
    10321 ggcaaactct acctggtcac cgacaaccgg tgccgtgcct aacaactgct ggacaatttc
    10381 acccagcgtt tgctgcttat cacgatattc tcgcccgtct tccaggccat atatcagcgc
    10441 aacatcagca tatttggcgc tggcttcgag aatgaagtca ccaaagaagc gttgatccag
    10501 cgcgaccggc ggcgactggc tgaacagttt accgagcgcc ggaagatcgc gttcccgacc
    10561 aattacacac aacacatcgc cttcgcgcag tcgggtgctg ccggtaggat gaagcaactg
    10621 gttatcacga aacagtgccg caatacgcgt ctcttttggc atatgcaaat cgcgcagtgc
    10681 cgcgcccacg caccatttat cggcactcaa ttgataaaca aactgctccc acggattttc
    10741 cggatgaata tccaggccaa cgcgtgacac cggacgtccc actggcggaa ccaccacttt
    10801 ggctttttta gccgcccacg agagtgatgt tccctgcaag agcagtgaaa ccagaaccac
    10861 aaagaaggcg acattaaaga acagacgtgc attctccagc cccgccatca tcgggaacac
    10921 ggccaggatg attggcaccg cgccgcgtaa tcctacccag ctgataaaca cgcgctcacg
    10981 cagattgaaa ccgcggaagg ggagcaatcc agcaaatacc gaaaggggac gggcgaagaa
    11041 tatcatccat gccgacaaaa ttagcgccgg aatggcaata ggcagcagat cgcttgggtt
    11101 aaccaatagc cccagcacca ggaacatggc gatttgcgcc agccaggcga ggccgtcgaa
    11161 attttgcagg atgccgtagc ggttgcgaat cggccgatta cccagcagaa aaccgcacag
    11221 ataaacagcc agaataccgc tgccttccag cgccgtggtt aaagcaaaaa ttaaaatacc
    11281 gccgcttaat gccagcaatg gatataatcc ggcaggcagg gcgatgcgat taatcatttg
    11341 cagcagtaaa taaccaccgc caagtccgat gacaatcccg aggccaaatt gctgcagaat
    11401 atcgaccacg aacatccaac tgacactgct ttcatgttgc tggatcatcg caatcagggt
    11461 aatcgtcaga aagaccgcca ttggatcatt actgccggat tcaatttcca gcgtcgagcc
    11521 aacacgttcg ttaagcccct taccacccag cagagaaaag accgctgcag catcggtaga
    11581 gccgacgata gcgccgatta ataagccttc aatcaaatca agattaaaca gccacgccgc
    11641 catcatgccg gttaaaccag aggtgataag cacgcccagc gtcgccagcg acagtgccgg
    11701 tcctaacgcc acacgaaagg aactggcctg agtgcgcatc ccgccgtcga gcaaaataat
    11761 cgccagtgcc aggttactta ccatgtaggc gaaggggtaa ttatcaaacg ggataccgcc
    11821 gacgccatcg actcctgcca gcatgccgat cgccagaaaa ataaccagaa taggaatgcc
    11881 aagacgggaa gaaaatgaac taagtaatat actgctggtg acaaggatgg atcctaagat
    11941 gaaaaggcta attattgttg tggcatccaa cggtcggtta ctcctgatta cgctgtctct
    12001 tatataaacc ctaccatatt agcggcagag acagcgtttt acttagccct gaagcgtgat
    12061 ttttttacat tttaagaaca ggatgaccgc taatcgtcaa ctgagtgcct tcccgggtgt
    12121 tattcagaat ggcatgtgcg cccaacggca gcgtaaccgt gcgttgttca tgaccaaaat
    12181 cgaggccggt aatgagtgga atcgacaggc gggaacgcaa aaacgcggac actgactcca
    12241 ggttgtaacc tgcgtcataa tcattgggcg tgctgccgct aaagctaccg agaataatcg
    12301 ccttctgacg tggcaaaatt cccgcatgat agagctgcaa cagcatacgt tcgacgcgga
    12361 aagggtgctc gttaatatct tccagtacca ggataccgtt ctcaattttt ggcatccacg
    12421 gtgtaccaat cagtgaaatc agcatcgcaa gattgcctcc ccacaacgtg ccttcggtct
    12481 gacatgtcgg gccttcccct tgccattcaa tggtgaaggt tttattgcgt aacgccagcc
    12541 agaaatggtg ctcggtaaag gcgttcagtt catccgcacc aaagtttgct accagcatgg
    12601 ggccgctaaa ggtgatgaca ttgccttgcg ccagaagacc gcactgaatg gcggtaaaat
    12661 cgctatgtcc gcaaatgagt aacgggtcat gttgttggcg agccaccagt gcctgccagt
    12721 caatatctgc cagtaaacga ctggcaccgt aaccgccgcg tacagccagc acgatggtgt
    12781 tgggtgtagt cagtctggca agggaattga gatcttccag acgctccgtt tccgtacccg
    12841 caaaacgctc acaacgacgg gcaataacct cgacgttatt gacttgatgc cccgcgtcgg
    12901 taaggcgctg gataccacgc agcgcggcgt gctgtttaat gctgtaaccc gatggggcaa
    12961 ttaagtgaaa cagagacatg gcaattcctt gctgacaaca gaaacgaaat gtatatcatg
    13021 ccgcttaggt gtgccgttgt cacctcaacg gcgattccag gctataagga tagaagaagt
    13081 gaaattgaga tggtttgcct ttttgattgt gttattagcg ggttgttcat caaagcatga
    13141 ctatacgaac ccgccgtgga acgcgaaagt tccggtgcaa cgtgcgatgc agtggatgcc
    13201 aataagccag aaagccggtg cagcctgggg cgtcgatcca caattgatca cggcgattat
    13261 cgctatcgaa tcgggtggta atccgaacgc ggtgagtaaa tcgaatgcca ttggtttgat
    13321 gcagttaaaa gcttcaacct ccggacgtga tgtttatcgc cgtatgggct ggagtggtga
    13381 gccgacgacc agcgagctga aaaatccaga gcgtaatatt tcaatggggg cggcttacct
    13441 gaatattctg gaaaccggcc cgctggcagg cattgaagat ccgaaggtac tgcaatatgc
    13501 gctggtggtg tcatacgcta acggggcagg tgcgctgcta cggactttct cgtcagatcg
    13561 gaaaaaggcg atcagcaaaa tcaacgattt ggatgctgac gagttcctcg atcacgtagc
    13621 gcgcaatcat cctgcgccgc aggctccgcg ctatatctac aaacttgagc aggcactgga
    13681 cgcgatgtaa atcagtcgcg tactttgtcc gctttctccc gggcttcccg ctcgagagag
    13741 aaaataatcc gttgtaattg ccgctccacc gtcgggctga cgttaagaaa acggaagctc
    13801 agacggggag tggtgatggt ttcattcttg ccatcaatca ctttgcgctc gctgatggag
    13861 attaactggg cgtcaaagtg aaaaacaccc cattgcccca tgttgacttc aatctgagcg
    13921 aagcgcatgc cttcttgtaa ttcggcaggc tttgctgttt ccagtaatgc gcccatgccg
    13981 cctaacgaca aatcatacag gcggaaacgt aacgtactgt tatccgccag tttggtctgg
    14041 caaaaataag gcggatggag tggggcggag atgcggaaat atcggcgtcg ttgtacaaac
    14101 cataaggtgg gaggcggtac ggtaataaat gccggaagct gcaagtattc actctgctgt
    14161 agttgttcaa cagtaaactc gactttcgca ccctgagttt cggcggtaat ggtaatatgc
    14221 tgcgccttta gcacggcgat gttgtcttcg gcttgactgc cgaaatccag caccagttta
    14281 tccggggtta ttgccagtat tttgctgatc agctgcccgc cattccaact gagacgcaaa
    14341 ggaattgcgg ctttgtgcaa atcgcgtaac acgcccagga cggctaacgg attttgtttc
    14401 aggaactgct catggtaatg actcacgcgg aaaaactcct gactgacaaa ctgtctttgg
    14461 tttatcggtc acagttaaca aaacttaata caaatgcgtg aatatttttt acatgttgtt
    14521 cttaaatcag ccgacatacg cccagcatcg atcccgccct tgcctatact tagagcgttg
    14581 acgtaagcat ttcttgcgtc cgattcatcg aaacgagggc ttgaacatgg gaattattgc
    14641 ctggattatt tttggcctga tagccggcat tatcgccaag ctaatcatgc cggggcgtga
    14701 tggtggtgga tttttccaga cctgtattct cgggatagtc ggtgcggtgg tcggcggctg
    14761 gctggcgacc atgtttggca ttggcggctc catcagcggt tttaatttgc acagcttcct
    14821 ggtggcggtg gtgggagcta ttctcgttct gggcttattc cgcctgctgc gaagagaata
    14881 agattttcat aaggcggata gcgatacaga tgccgctatc cgcttttcac atcagaacgt
//
LOCUS       DAJVUP010000102        14936 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.102, whole genome shotgun sequence.
ACCESSION   DAJVUP010000102 DAJVUP010000000
VERSION     DAJVUP010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14936
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.102"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..450
                     /locus_tag="OQQ75_002792"
     CDS             <1..450
                     /locus_tag="OQQ75_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312811.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HCS1977053.1"
                     /translation="QEVNAALFKEYLPLLQQSEPTIKQPVRWKNALGELNANLDISIA
                     DPAKSSSSTNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKRADKQISGMMT
                     LGQMFQLITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH"
     gene            complement(491..1423)
                     /locus_tag="OQQ75_002793"
     CDS             complement(491..1423)
                     /locus_tag="OQQ75_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HCS1977054.1"
                     /translation="MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVK
                     LLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICN
                     HRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWALDMPFMKRYSRAYLLRH
                     PERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIA
                     MALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYIN
                     DKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQDK"
     gene            1787..4573
                     /gene="polA"
                     /locus_tag="OQQ75_002794"
     CDS             1787..4573
                     /gene="polA"
                     /locus_tag="OQQ75_002794"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HCS1977055.1"
                     /translation="MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN
                     MLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM
                     GLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL
                     GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP
                     EKIAGLSFRGAKTMAAKLQQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELL
                     GLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTIL
                     DEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA
                     PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN
                     SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL
                     HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL
                     EKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP
                     KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR
                     NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE
                     VFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGV
                     LEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADII
                     KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPL
                     LVEVGSGENWDQAH"
     gene            complement(4955..5587)
                     /locus_tag="OQQ75_002795"
     CDS             complement(4955..5587)
                     /locus_tag="OQQ75_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HCS1977056.1"
                     /translation="MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALN
                     TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY
                     LEKRHSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN
                     MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE"
     gene            6169..6678
                     /gene="yihI"
                     /locus_tag="OQQ75_002796"
     CDS             6169..6678
                     /gene="yihI"
                     /locus_tag="OQQ75_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HCS1977057.1"
                     /translation="MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGS
                     RAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELL
                     ETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQE
                     DMMRLLRGN"
     gene            6867..8240
                     /gene="hemN"
                     /locus_tag="OQQ75_002797"
     CDS             6867..8240
                     /gene="hemN"
                     /locus_tag="OQQ75_002797"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HCS1977058.1"
                     /translation="MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQA
                     VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG
                     RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLR
                     AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT
                     PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF
                     LTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD
                     CYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQW
                     DLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARM
                     QQFSRVI"
     gene            complement(8430..8540)
                     /locus_tag="OQQ75_002798"
     CDS             complement(8430..8540)
                     /locus_tag="OQQ75_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YshB family small membrane protein"
                     /protein_id="HCS1977059.1"
                     /translation="MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS"
     gene            complement(8651..10060)
                     /gene="glnG"
                     /locus_tag="OQQ75_002799"
     CDS             complement(8651..10060)
                     /gene="glnG"
                     /locus_tag="OQQ75_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HCS1977060.1"
                     /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA
                     SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
                     PKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
                     SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT
                     GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI
                     IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG
                     VEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE
                     STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR
                     LLGWGRNTLTRKLKELGME"
     gene            complement(10072..11121)
                     /gene="glnL"
                     /locus_tag="OQQ75_002800"
     CDS             complement(10072..11121)
                     /gene="glnL"
                     /locus_tag="OQQ75_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HCS1977061.1"
                     /translation="MATGTQPDAGQILNSLINSILLIDDNLEIHYANPAAQQLLAQSS
                     RKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDG
                     MILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALP
                     DPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNV
                     RLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGER
                     YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTS
                     WPGHTEFSVYLPIRK"
     gene            complement(11295..12704)
                     /gene="glnA"
                     /locus_tag="OQQ75_002801"
     CDS             complement(11295..12704)
                     /gene="glnA"
                     /locus_tag="OQQ75_002801"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HCS1977062.1"
                     /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF
                     EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD
                     RDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWN
                     SSTQYEGGNKGHRPAVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG
                     QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLS
                     KNGVNLFAGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
                     YSARNRSASIRIPVVSSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA
                     MDKNLYDLPPEEAKEIPQVAGSLEEALNELDLDREFLKAGGVFTDEAIDAYIALRREE
                     DDRVRMTPHPVEFELYYSV"
     gene            13077..14900
                     /gene="typA"
                     /locus_tag="OQQ75_002802"
     CDS             13077..14900
                     /gene="typA"
                     /locus_tag="OQQ75_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000570679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent GTPase TypA"
                     /protein_id="HCS1977063.1"
                     /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMD
                     SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF
                     DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
                     PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYV
                     GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI
                     TGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR
                     LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
                     DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
                     FRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG
                     KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLE
                     QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDY"
BASE COUNT         3863 a         3746 c         3851 g         3476 t
ORIGIN      
        1 caagaagtga atgctgcatt gttcaaagag tatttaccgt tattacaaca aagtgagccg
       61 accattaaac aaccggtaag atggaagaac gcactcggcg aactaaatgc caatctggat
      121 atcagtattg ccgacccagc caaatcttca tcatccacaa acaaagatat caaatcgctc
      181 aattttgatg tgaagttacc gcttaatgtc gtcacagaaa ccgcaaaaca gcttaattta
      241 tctgaaggaa tggatgcgga aaaagcgcaa aagcgggctg ataaacaaat cagcgggatg
      301 atgaccttag gtcagatgtt tcagttaatc acgattgaca acaataccgc ctcgctgcaa
      361 ctgcgttata caccgggtaa agttgttttt aacggacagg agatgagcga agaagaattt
      421 atgtctcgtg ccggacgttt tgttcattaa aatactcact cgcctctgct cattcagagg
      481 cgagcaaaat ttacttgtcc tgccgctgtg atgacatcaa cgacgtcaga agtcggtctt
      541 tttcctgcca cagtgagttc agccattgct gaaaatggcg cttaaagctt ttgtcattga
      601 tgtagtcgcc atgtaactca tcggcaatag gctgtaaatc cacatgaacg acaattcgcg
      661 tcagtttacc gcttaacata tcgaagaacg gctgacggtt attgtccgga taacacagcg
      721 taacattaag cagtttatcg aattgtttac ccagtacatt tagcgccatc gcaatgcctg
      781 ccgcctttgg tggcaacaag ttttgaaaag tggagtgggt ttgctgatgt ttttcttgcg
      841 tgaaacggga gccttcaacg aaattgacaa tggtggtggg atgcaggcga aacttttcac
      901 aagaacgccg agtggtttca acatctttac cacgtcgctc cggatgacgt aataaataag
      961 cgcgggaata acgcttcata aacggcatat ccagcgccca gcacgccagg ccaagaaatg
     1021 gcacccaggc cagctgttgc ttgaggaaat atttattcat cggaatgtgc ttacgaaaca
     1081 gcacgcacag tacgacaata tctgcccaac tacggtggtt acaaataagc agataccagt
     1141 tcttcttact taacccttcc agcccgtgaa cttcccattg caggtgtggg ttcagatgca
     1201 gtaataccgc cagaccttca caccagcaat acatcataaa atcacaaaaa cgcgaaacct
     1261 ttcgccaaat gactggcaca ggtagcaata gttttacaat cccggcaatg atgatcggga
     1321 cggaacaaaa aatagtgacc aaaatggtca atacgatact cagcaaaagg gttatcgcag
     1381 cgagtattct cgtcataatg aatttattca aaaggttagc catagacagt gcgctaaaga
     1441 agcgcaaggc gcagatttta gcagaaaacg acccaaataa cggatgatcc ttaaggagaa
     1501 aaataattca tatctatcca cattagaaaa aatcccatta tctcaattat tagggatggc
     1561 tttattttta actacatgaa aaacaaagac aaacatcata ctgtaaaaag catgataata
     1621 aattaaaagc gatgtaaata atttatgcac aaagttatcc acatgacgat ttgcgagcga
     1681 tccagaagat ctacaaaaga ttttcacgaa aagcggtgaa aaactcatgt ttttatcctg
     1741 tctgtggcat cctttaccca taatctgata aacaggcacg gacattatgg ttcagatccc
     1801 ccaaaatcca cttatccttg tagatggttc atcttatctt tatcgcgcat atcacgcgtt
     1861 tcccccgctg actaacagcg caggcgagcc gaccggtgcg atgtatggtg tcctcaacat
     1921 gctgcgcagt ctgatcatgc aatataaacc gacgcatgca gcggtggtct ttgacgccaa
     1981 gggaaaaacc tttcgtgatg aactgtttga acattacaaa tcacatcgcc cgccaatgcc
     2041 ggacgatctg cgagcacaaa tcgaacctct gcacgcgatg gttaaagcga tgggactgcc
     2101 gctgctggcg gtttctggcg tagaagcgga cgacgttatc ggtactctgg cgcgcgaagc
     2161 cgaaaaagcc gggcgtccgg tgctgatcag cactggcgat aaagatatgg cgcagctggt
     2221 gactccaaat attacgctta tcaataccat gacgaatacc atcctcggac cggaagaggt
     2281 ggtgaataag tacggcgtgc cgccagaact gatcatcgat ttcctggcgc tgatgggtga
     2341 ctcctccgat aacatccctg gcgtaccggg cgtcggtgaa aaaaccgcgc aggcattgct
     2401 gcaaggtctg ggcgggctgg atacgctgta tgccgagcca gaaaaaattg ctgggttgag
     2461 cttccgtggc gcgaaaacaa tggcagcgaa gctccagcaa aacaaagaag ttgcttatct
     2521 ctcataccag ctggcgacga ttaaaaccga cgttgaactg gagctgacct gtgaacaact
     2581 ggaagtgcag caaccggcag cggaagagtt gttggggctg ttcaaaaagt atgagttcaa
     2641 acgctggact gctgatgtcg aagcgggcaa atggttacag gccaaagggg caaaaccagc
     2701 cgcgaagccg caggaaacca gtgttgcaga cgaagcgcca gaagtgacgg caacggtgat
     2761 ttcttatgac aactacgtca ccatccttga tgaagaaaca ctgaaagcgt ggattgcgaa
     2821 gctggaaaaa gcgccggtat ttgcatttga taccgaaacc gacagccttg ataacatctc
     2881 tgctaacctg gtcgggcttt cttttgctat cgagccaggc gtagcggcat atattccggt
     2941 tgctcatgat tatcttgatg cgcccgatca aatctctcgc gagcgtgcac tcgagttgct
     3001 aaaaccgctg ctggaagatg aaaaggcgct gaaggtcggg caaaacctga aatacgatcg
     3061 cggtattctg gcgaattacg gcattgagct gcgtgggatt gcgtttgata ccatgctgga
     3121 gtcctacatt ctcaatagcg ttgccgggcg tcacgatatg gacagcctcg cggaacgttg
     3181 gttgaagcac aaaaccatca cttttgaaga gattgcgggt aaaggcaaaa atccactgac
     3241 ctttaaccag attgccctcg aagaggccgg acgttacgcc gccgaagatg ctgatgtcac
     3301 cttgcagttg catctgaaaa tgtggccgga cctgcaaaaa cacaaagggc cgttgaacgt
     3361 cttcgagaat atcgaaatgc cgctggtgcc ggtgctttca cgcattgaac gtaacggtgt
     3421 gaagatcgat ccgaaagtgc tgcacaatca ttctgaagag ctcaccttgc gtctggctga
     3481 gctggaaaag aaagcgcatg aaattgcagg tgaagaattt aacctttctt ccaccaagca
     3541 gttgcaaacc attctgtttg aaaaacaggg tattaaaccg ctgaagaaaa cgccgggtgg
     3601 cgcgccgtca acgtcggaag aggtactgga agaactggcg ctggactatc cgttgccaaa
     3661 agtgattctg gagtatcgtg gtctggcgaa gctgaaatcg acctacaccg acaagctgcc
     3721 gctgatgatc aacccgaaaa ccgggcgtgt gcatacctct tatcaccagg cagtaactgc
     3781 aacgggacgt ttatcgtcaa ccgatcctaa cctgcaaaac attccggtgc gtaacgaaga
     3841 aggtcgtcgt atccgccagg cgtttattgc gccagaggat tatgtgattg tctcagcgga
     3901 ctactcgcag attgaactgc gcattatggc gcatctttcg cgtgacaaag gcttgctgac
     3961 cgcattcgcg gaaggaaaag atatccaccg ggcaacggcg gcagaagtgt ttggtttgcc
     4021 actggaaaca gtcaccagcg agcaacgccg tagcgcgaaa gcgatcaact ttggtctgat
     4081 ttatggcatg agtgctttcg gtctggcgcg gcaattgaac attccacgta aagaagcgca
     4141 gaagtacatg gacctttact tcgaacgcta ccctggcgtg ctggagtata tggaacgcac
     4201 ccgtgctcag gcgaaagagc agggctacgt tgaaacgctg gacggacgcc gtctgtatct
     4261 gccggatatc aaatccagca atggtgctcg tcgtgcagcg gctgaacgtg cagccattaa
     4321 cgcgccaatg cagggaaccg ccgccgacat tatcaaacgg gcgatgattg ccgttgatgc
     4381 gtggttacag gctgagcaac cgcgtgtacg tatgatcatg caggtacacg atgaactggt
     4441 atttgaagtt cataaagatg atgttgatgc cgtcgcgaag cagattcatc aactgatgga
     4501 aaactgtacc cgtctggatg tgccgttgct ggtggaagtg gggagtggcg aaaactggga
     4561 tcaggcgcac taagattcgc ctgaacatgc ccttttttcg taagtaagca acataagctg
     4621 tcacgttttg tgatggctat tagaaattcc tatgcaacaa ctgaaaaaaa attacaaaaa
     4681 gtgctttctg aactgaacaa aaaagagtaa agttagtcgc gtagggtaca gaggtaagat
     4741 gttctatctt tcagaccttt tacttcacgt aatcggattt ggctgaatat tttagccgcc
     4801 ccagtcagta atgactgggg cgttttttat tgggcgaaag aaaagatccg taatgcctga
     4861 tgcgctatgt ttatcaggcc aacggtagaa ttgtaatcta ttgaatttac gggccggata
     4921 cgccacatcc ggcacaagca ttaaggcaag aaaattattc gccgtcctgc gtttcttcta
     4981 caggctgcat ctcgctaaac caggtatcca gtttctgccg cagcttgtcc acgccttgtt
     5041 tcttcaacga agaaaacgtt tcaacctgca catcaccgtt aaacgccagt acagcttcac
     5101 gcaccatatt caattgcgct ttacgtgcgc cgcttgccag tttgtccgct ttggtcagca
     5161 gcaccagaac ggcgatattg ctgtctaccg cccactcaat catctgctga tccaaatctt
     5221 tcagcggatg gcgaatatcc attagcacca ccagaccttg caggctatga cgtttttcga
     5281 ggtattcgcc gagcgcacgc tgccatttgc gcttcatctc ttccgggact tccgcataac
     5341 cgtacccagg caagtcaacc agacgcttgc cgtcagccac ttcaaacagg ttgataagct
     5401 gggtgcgccc tggggttttt gaggtacgag ccaggctttt ctggttagtc agcgtgttca
     5461 gcgcgctgga tttacctgcg ttggaacggc ctgcaaaagc cacttcaatt ccggtatcgg
     5521 aaggtaggtg gcgaatatca ggcgcactca tcacaaaatg cgtctgttga taattcaaat
     5581 tagtcaaagc ggtcgtctcc gtcagtcaaa gctttgtggc gattatacct gaaccataat
     5641 aaaaggcgga tttttcggcg tgagcgttgt aagtaaaagc catacgcttt gtgagacatt
     5701 gccgatagtc tttatgcgaa atagcagaga aaattctgcg atgcatgtca aataagctat
     5761 ataaatcagt gaattgcttt tatataaaac tctgaaaatg tgcaaatact gatggcggtt
     5821 gattgtttgt ttaaagcgaa ggcgtaaagt agcacccata gagcgaggac gctaacagga
     5881 acaatgactc aggatgaggg tcaggagcgc caggaggcga agacagagga ttgtcaggaa
     5941 gacaaacgtc cggagacgta attaaacgga aatggaatca acacggattg ttccggctaa
     6001 aggaaaaaca gggtgtgttg gcggcctgca aggattgtaa gacccgttaa gggttatgag
     6061 tcaggaaaaa aggcgacaga gtaatctgtc gccttttttc tttgcttgct ttctgttaga
     6121 ttccgccgca aatcgatact gaataaaacg gctaaaagac gaaccattat gaaaccatca
     6181 tcttcaaact cacgcagcaa aggtcatgca aaagcgcgtc gaaaaacacg cgaggagctg
     6241 gatcaggaag ctcgtgatcg caagcgtcag aaaaaacgtc gtggtcatgc gccgggcagc
     6301 cgcgcagcgg gcggaaacac cacgtcaggc agcaaaggcc agaacgcacc aaaagatcca
     6361 cgtattggca gtaaaacccc tattccattg ggcgtgactg aaaaagtcac caaacagcac
     6421 aaaccgaaga gtgagaaacc tatgctttca ccgcaggcgg agttggaatt actggaaacg
     6481 gatgagcgtc tggatgcgct gctggaacgt ctggaagcag gcgaaaccct gagtgccgaa
     6541 gagcaatcct gggtggatgc taaactggat cgtattgatg agttgatgca gaaactcggc
     6601 ctctcttatg acgatgacga agaagaggaa gaagacgaga agcaagaaga catgatgcgt
     6661 ctgctgcggg gcaactaacg gattgccgcc gtgggccttc ccgttctgct gataaccctt
     6721 ccggttatat gttatctggt gtggttattc gttaaactac agcggttgtc gcggcgacaa
     6781 aagtggctgc gcaaccggct gatgacccga aacgggcatc cgccggtacg ccgtagccgc
     6841 cagagacgcc atcggaagga gtgagcatgt ctgtacagca aatcgactgg gatctggccc
     6901 tgatccagaa atataactat tccgggccac gatacacctc gtacccgacc gcgctggagt
     6961 tttcagaaga cttcggcgaa caggcgtttt tacaagccgt ggcgcgctat cctgagcgtc
     7021 cattatctct ctacgtacat atcccgttct gccataagct ttgttacttc tgcggttgca
     7081 ataagattgt tactcgccag cagcacaagg ccgatcagta tctggacgcg ctggagcaag
     7141 aaatcgtcca tcgtgcaccg ctgttcgccg ggcgtcacgt cagccaattg cactggggcg
     7201 gcggaacgcc gacgtatctg aataaagcgc aaatcagccg cctgatgaag ctgctgcgcg
     7261 aaaacttcca gttcaatgcc gatgcggaga tttcgatcga agtcgatccg cgggaaatcg
     7321 aactggatgt actcgatcat ttacgcgccg aaggctttaa tcgcctgagc atgggcgtgc
     7381 aggacttcaa caaagaagtg caacgtctgg ttaaccgcga gcaggatgaa gagttcatct
     7441 ttgcactgct taaccatgcg cgtgagattg gttttacctc caccaacatc gacctgattt
     7501 acggcctgcc gaaacagacg ccggagagtt tcgcctttac cctgaaacgt gtggcggagc
     7561 tgaaccccga tcgtctgagt gtctttaact acgcgcatct gccgaccatt tttgctgctc
     7621 agcgcaaaat caaagatgct gacctgccga gtccgcagca aaaactcgat atcctgcagg
     7681 aaaccatcgc cttcctgacg caatcgggct atcagtttat cggtatggat cactttgccc
     7741 gtccggatga cgagctggcg gtggcccagc gtgaaggcgt gctgcatcgt aacttccagg
     7801 gctacaccac tcagggcgat accgatctgc tggggatggg cgtttccgcc atcagcatga
     7861 ttggcgactg ctacgcgcag aaccagaaag agttgaagca gtactatcag caagtggatg
     7921 aacaaggcaa tgcgctgtgg cgtggtattg cgctaacgcg tgatgactgt attcgccgcg
     7981 atgtgattaa gtcgctcatc tgcaacttcc gtctggatta cgcccctatt gagaaacagt
     8041 gggatttgca cttcgctgat tactttgcgg aagatctcaa gctgctcgcc ccgttagcaa
     8101 aagatgggct ggtggatgtg gatgagaagg gaatacaggt gacggcgaaa ggtcgcttgc
     8161 tgatccgcaa catttgcatg tgctttgata cctatctgcg ccagaaagcg cggatgcagc
     8221 agttctcacg ggtgatttga atagtgaatg gcgcttcgtt tacaaagtag aaaacgaaag
     8281 cgccatcaat gtgctgagaa caagattgcc tgatgcgcta cgcttatcag gcctacaaaa
     8341 cctgttgaaa atattgcttt tgtaggccgg ataaggcgtt cacgccgcat ccggcatgaa
     8401 caaagagcac ttcatcagca atctgaaact caactaaaca gcccaatcat tgcggcacac
     8461 agcacggcag caacggcagt ttgcggtgtg tggctgtcaa ctgcgccact cgataccaga
     8521 ttaattattg attccagcat aatgactctc cccgttttcc gggcagatca tactgaactt
     8581 atcggaacag taaagcgtaa aataccagca atttgcgctc aataatcaat ctttacacac
     8641 aagctgtgaa tcactccatc cccagctctt ttaacttacg cgtcagggtg ttgcggcccc
     8701 agccgagtag ccgcgccgct tcctgtttat gcccctgcgt atgtcgcaac gcggtcgtca
     8761 gtaacgtccg ctccagctct ggctgcgctt cggaaagcag attttgatga ccggaacgca
     8821 gcgctctgtc tgcccactgc gcaagaagcg tcgcccagct gtccggttgc atttgcgaag
     8881 tactctccgc aaccgttgat tcaaacagtt cgccgggcaa atcctgaatc aacacttcct
     8941 gcccggcggc catcaccgtt agccagcggc aggtgttttc cagctggcgc acgttgcctg
     9001 gccacgccag acgcgtcaga gcagcttcgg tttccggatg cagtaacttc gcttctacgc
     9061 ccagttcgcg cgcggcaacc tgtaaaaaat ggcgcgccag acggggaata tcttcccgac
     9121 gttcgcgcag cggcggtaga tgaacgcgga taacgtttag gcggtggaac agatcctcac
     9181 ggaacttacc ttcctgcact cgctgttcga gattctggtg agtggcagcg ataatccgca
     9241 catccacttt caccggcgca tagccgccaa cgcggtaaaa ctgaccgtct gccagcacgc
     9301 gcagcaaacg cgtctgcaca tccagcggca tatcaccaat ttcgtcgagg aataatgtac
     9361 cgccatcggc ctgttcaaaa cgcccctgac gaatggtatt cgcgccagta aacgcgcctt
     9421 tctcgtggcc aaacagttct gattcgatca aatcttttgg gatagctgcc atattcagcg
     9481 cgataaacgg tgctttggcg cgcggactgt ggcgatgcag ggcatgagcg accagttctt
     9541 taccggtgcc ggattcgccg ttaatcagca cgctaataga agaacgcgaa agccgaccga
     9601 taatacggaa cacgtcctgc atggctggcg cttcgccgat gatatcggtc gttgggccgt
     9661 taagctgaat attacgcggc tgctgctgtt cctggtaatg actgatagcg cgctcaacca
     9721 gcgccacggc ttcgtcgata tcaaacggtt tgggcagata atcaaacgcc ccttgttgat
     9781 aggcgctgac ggcagcatcc agatcggaat gtgcggtcat aatgatgacc ggaagcattg
     9841 gatggcgctg tttaatctgc ttgagcagcg ccagcccgtc cattcccggc atacggatat
     9901 ctgaaagcag cacatccggc gttttgctcg ccagcgcctc cagtacttcc gcgccgttct
     9961 caaatgtcgt acaggttaaa cccgctccag cgagcgcacg ttcaagcacc caacggatgg
    10021 aactatcgtc atcgactacc cagactatcc ctcgttgcat aaacgtcacc tttatttcct
    10081 gataggcagg taaaccgaga actcggtatg acctggccaa ctggtaaatt caattttgcc
    10141 tgaatgctga tcaatcaaat tacgggcgat ggataagcca agcccggtgc caccttcgcg
    10201 gccgctgacc atcgggtaaa acagcgtatc ctgcaaatga ggcggaatgc ccggcccgtt
    10261 atcttccaca tcaatccgcg ccgccagccg gtagcgctcg ccgtgtaagg tcagttgaaa
    10321 cgcggtgcgg gtacgcagaa tgatttcacc gccttccggc cccagcgcct gtagcgcatt
    10381 gcgcacaata ttcagcaaga cctgttcaat ttgatccggg tcgtgcgcca gttccggcag
    10441 gctgggatcg taatcacgaa tcaaccgcac gttgtccggc agttccatcg acaccagcgt
    10501 taccacgcgt tcagccactt tgtgaatact ttcggtaacg cgcgtaccgg gcagctgcgg
    10561 ccccaacaga cggtcgacca gatttcgcag ccggtccgcc tgttcgataa tcactttggt
    10621 atattcgagt agtgatgggt caggtaacgc tttgctgagc agctgcgccg cgccacgtaa
    10681 accgccaagc ggatttttaa tctcatgtgc caggccgcgc actaaatcac gggcagcaac
    10741 ctgctgggcg tgctgtagct gttcctgact taagcggcgc tggttatcca tcggagccat
    10801 ctccagcagg atcatgccgt ccggcatacg ctgggccgtc acagaaagga tatgcgagcg
    10861 cccgtcgatg accagcgtca cttcgttatc ggtaaaacct tgccccgcct ccagactttc
    10921 ttgcatcagc tcgatattta atgagaagta gctcaacagt tccggtaacg gtgtaccaaa
    10981 caatttgcgg gagctttggg cgagcagttg ttgcgcggca gggttggcgt aatggatctc
    11041 caggttgtca tcgattaaca aaatactgtt aatcagcgag ttgaggatct gcccagcatc
    11101 gggctgcgtg cctgttgcca taaagcagtc tcctgaacag gttgcaccat tttagtgcat
    11161 tatagctttt tacggataaa aagcgcgaag catcagagaa ttgacggaga aaaaagccca
    11221 tgcagagatg ggctgaaagt ttccacggca actaaatccc ggcgttgttg cgccgggtag
    11281 tacaacttca actattagac gctgtagtac agctcaaact ctaccggatg cggagtcata
    11341 cgcacgcggt catcttcttc gcgacgcaga gcgatgtacg catcaattgc ttcgtcagtg
    11401 aacacgccac cggctttcag gaactcgcgg tccagatcca gttcgttcag tgcttcttcc
    11461 agagagcctg caacctgtgg gatctctttc gcttcttctg gcggcaggtc atacaggttt
    11521 ttgtccatgg cttcacccgg atggatcttg ttcttgatac catcaagacc ggccatcagc
    11581 agggcagcaa agcacaggta cgggttagct gccggatccg ggaaacgtac ttcgatacga
    11641 cgtgctttcg gagaagaaac caccggaata cggatagacg cagaacggtt acgcgcagag
    11701 taagccagca ttaccggtgc ttcatagccc gggaccagac gcttataaga gttggtggtc
    11761 gggtttgcca gggcgttaat cgctttagcg tgtttgatta cgccgccaat gtagtacagc
    11821 gcctgctcag acagacctgc gtatttgtcg cctgcgaaca ggttaacgcc gtttttagac
    11881 agagacatgt ggcagtgcat accggagccg ttatcaccga acatcggttt tggcataaag
    11941 gtcgcggttt taccgaagcg gtgcgctacg ttgtgcacaa catatttgta gatctgaatt
    12001 tcgtcagctt ttttggtcat ggtattgaag cgggtagcca cttcgttctg accagcagtc
    12061 gctacttcgt ggtgatgggc ttcaaccacc agccccatct gttccatcac cagacacatt
    12121 tcagaacgaa tatcctgagc cgagtctacc ggtggaaccg ggaagtaacc gcctttcact
    12181 gccggacggt gacctttgtt accaccttcg tattgggtgg aggagttcca tgcgccttcg
    12241 atatcgtcga tagcaacgtg ggaaccggag atagatgatc cgaaacggat gtcatcgaac
    12301 aggaagaatt caggttctgg cccgaacagt acggtgtcgg caatgccagt ggaacgcagg
    12361 taatcttcgg cgcgcttcgc aatggagcgc gggtcacggt catagccttg cagggtgcca
    12421 ggttcaagga tgtcgcaacg gataatcagg gtggagtcgg cgaagaacgg gtcaatcact
    12481 gcggtggatg cgtctggcat cagcaccatg tcggactcgt taatgccttt ccagccgcca
    12541 atcgaggagc cgtcaaacat tttgccttct tcgaagaatt cagcattcac ctgatgagca
    12601 gggatagtga cgtgctgttc tttaccttta gtatcggtga agcgcaaatc aacaaacttc
    12661 acttcgtgct cgttcagcat cgtcagtacg tgttcagcgg acatacttta actctcctgg
    12721 attggtcatg gtcgtcgtgg taacgaaatc tgcaattatt ttggccgtgt cgccgtaaaa
    12781 aagataaagc gaaatctgtg ccaactttta aattgcccct aaaaggcgtt atcatgcgca
    12841 ccatcgtgca aaagggctgc accacgatgt gaatgttgca ccaatatagt gcttcaatgg
    12901 aaacattaag caccatgttg gtgcaatgac ctttggataa ccctttttat gctccgtgaa
    12961 agcgatcaca aagggactct gcaatacttg tttgcggagg atgtttgtga tcctgttttg
    13021 tagtgcgatt aatccgtgta caataacgcg ctatttctaa tgcctgaggc aaagttgtga
    13081 tcgaaaaatt gcgtaatatc gccatcatcg cgcacgtaga ccatggtaaa accaccctgg
    13141 tagacaagct gctccaacaa tccggtacgt tcgactctcg tgccgaaacc caagagcgcg
    13201 tgatggactc caacgatttg gagaaagagc gtgggattac catcctcgcg aaaaacaccg
    13261 ctatcaaatg gaatgattac cgtatcaaca tcgttgatac cccggggcac gccgacttcg
    13321 gtggtgaagt tgaacgtgta atgtccatgg tagactcagt gctgctggtg gttgacgcat
    13381 ttgacggccc gatgccgcaa acgcgcttcg taaccaaaaa agcgtttgct tacggcctga
    13441 agccgattgt tgttatcaac aaagttgacc gccctggcgc gcgtcctgat tgggttgtgg
    13501 atcaggtatt cgatctgttc gttaacctcg acgcgaccga cgagcagctg gacttcccga
    13561 tcgtttacgc ttctgcgctg aacggtatcg cgggtctgga ccacgaagat atggcggaag
    13621 acatgacccc gctgtaccag gcgattgttg accacgttcc tgcgccggac gttgaccttg
    13681 acggtccgtt ccagatgcag atttctcagc tcgattacaa cagctatgtt ggcgttatcg
    13741 gcattggccg catcaagcgc ggtaaagtga agccgaacca gcaggtcact atcatcgata
    13801 gcgaaggcaa aacccgcaac gcgaaagtcg gtaaagtgct gggccacctc ggtctggaac
    13861 gtatcgaaac cgacctggcg gaagctggcg atatcgttgc gatcacgggc cttggcgaac
    13921 tgaacatttc tgacaccgtt tgcgacacgc aaaacgttga agcgctgccg gcactctccg
    13981 ttgatgagcc gaccgtttct atgttcttct gcgttaacac ctcgccgttc tgcggtaaag
    14041 aaggtaagtt cgtaacgtct cgtcagatcc tggatcgtct gaacaaagaa ctggtacaca
    14101 acgttgcgct gcgcgtagaa gaaaccgaag acgctgatgc gttccgcgtt tctggtcgtg
    14161 gcgaactaca cctgtctgtt ctgatcgaaa acatgcgtcg tgaaggtttc gaactggcgg
    14221 tatcccgtcc gaaagttatc ttccgtgaaa tcgacggtcg taaacaagag ccatatgaaa
    14281 acgtgactct ggacgttgaa gaacagcatc agggttctgt aatgcaggcg ctgggcgaac
    14341 gtaaaggcga cctgaaaaac atgaatccag acggtaaagg ccgcgtacgt ctcgactacg
    14401 tgatcccaag ccgtggtctg attggcttcc gttctgagtt catgaccatg acttccggta
    14461 ctggtctgct gtactccacc ttcagccact acgacgacgt acgtccgggt gaagtgggtc
    14521 agcgtcagaa cggcgtactg atctctaacg gtcagggtaa agcggtcgcg ttcgcgctgt
    14581 tcggtctgca ggatcgcggt aagctgttcc tcggtcacgg tgcagaagtt tacgaaggtc
    14641 agattatcgg tattcatagc cgctctaacg acctgactgt aaactgcctg accggtaaga
    14701 aactgaccaa catgcgtgct tccggtactg acgaagccgt tgttctggtt ccgcctatcc
    14761 gcatgactct ggaacaagct ctggagttca tcgatgatga cgaactggta gaagtgactc
    14821 cgacctctat ccgtattcgt aaacgtcacc tgacggaaaa cgatcgtcgt cgcgccaacc
    14881 gcgcaccgaa agactattaa tttcgttttt tagttataaa aaacctgcca tcgctg
//
LOCUS       DAJVUP010000103        14677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.103, whole genome shotgun sequence.
ACCESSION   DAJVUP010000103 DAJVUP010000000
VERSION     DAJVUP010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.103"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            5..475
                     /locus_tag="OQQ75_002803"
     CDS             5..475
                     /locus_tag="OQQ75_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012906731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HCS1977064.1"
                     /translation="MVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSL
                     GLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSL
                     KRANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP"
     gene            complement(552..899)
                     /gene="rplS"
                     /locus_tag="OQQ75_002804"
     CDS             complement(552..899)
                     /gene="rplS"
                     /locus_tag="OQQ75_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HCS1977065.1"
                     /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE
                     RTGKAARIKERLN"
     gene            complement(941..1708)
                     /gene="trmD"
                     /locus_tag="OQQ75_002805"
     CDS             complement(941..1708)
                     /gene="trmD"
                     /locus_tag="OQQ75_002805"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HCS1977066.1"
                     /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD
                     RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
                     ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL
                     GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
                     RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
     gene            complement(1739..2287)
                     /gene="rimM"
                     /locus_tag="OQQ75_002806"
     CDS             complement(1739..2287)
                     /gene="rimM"
                     /locus_tag="OQQ75_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HCS1977067.1"
                     /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY
                     QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE
                     EGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
                     GQVIKKVDLTTRSIEVDWDPGF"
     gene            complement(2306..2554)
                     /gene="rpsP"
                     /locus_tag="OQQ75_002807"
     CDS             complement(2306..2554)
                     /gene="rpsP"
                     /locus_tag="OQQ75_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HCS1977068.1"
                     /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS
                     EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA"
     gene            complement(2691..4052)
                     /gene="ffh"
                     /locus_tag="OQQ75_002808"
     CDS             complement(2691..4052)
                     /gene="ffh"
                     /locus_tag="OQQ75_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HCS1977069.1"
                     /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA
                     LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV
                     VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
                     PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL
                     FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG
                     EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF
                     LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE
                     IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF
                     PGR"
     gene            4219..5010
                     /locus_tag="OQQ75_002809"
     CDS             4219..5010
                     /locus_tag="OQQ75_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HCS1977070.1"
                     /translation="MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVC
                     HAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI
                     NLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL
                     AFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWF
                     VYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS"
     gene            5031..6317
                     /locus_tag="OQQ75_002810"
     CDS             5031..6317
                     /locus_tag="OQQ75_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026171.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1977071.1"
                     /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ
                     GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT
                     FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIK
                     TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGID
                     INDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAA
                     DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS
                     PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT
                     RVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE"
     gene            complement(6372..6965)
                     /gene="grpE"
                     /locus_tag="OQQ75_002811"
     CDS             complement(6372..6965)
                     /gene="grpE"
                     /locus_tag="OQQ75_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HCS1977072.1"
                     /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKI
                     ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL
                     DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV
                     ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA"
     gene            7088..7966
                     /gene="nadK"
                     /locus_tag="OQQ75_002812"
     CDS             7088..7966
                     /gene="nadK"
                     /locus_tag="OQQ75_002812"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HCS1977073.1"
                     /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCKKGYEVIVEQQIA
                     HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT
                     DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI
                     EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA
                     RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS
                     YFNTLSTKLGWSKKLF"
     gene            8052..9713
                     /gene="recN"
                     /locus_tag="OQQ75_002813"
     CDS             8052..9713
                     /gene="recN"
                     /locus_tag="OQQ75_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HCS1977074.1"
                     /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL
                     CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR
                     SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
                     ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA
                     NSGQLLTTSQNALALMAYGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ
                     IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ
                     QLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQ
                     FTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALATQVITARK
                     METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE
                     TDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA"
     gene            9862..10203
                     /gene="bamE"
                     /locus_tag="OQQ75_002814"
     CDS             9862..10203
                     /gene="bamE"
                     /locus_tag="OQQ75_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417107.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HCS1977075.1"
                     /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS
                     KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT
                     NIDNKPALSGN"
     gene            complement(10265..10555)
                     /locus_tag="OQQ75_002815"
     CDS             complement(10265..10555)
                     /locus_tag="OQQ75_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417108.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HCS1977076.1"
                     /translation="MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT
                     DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK"
     gene            complement(10545..10982)
                     /gene="ratA"
                     /locus_tag="OQQ75_002816"
     CDS             complement(10545..10982)
                     /gene="ratA"
                     /locus_tag="OQQ75_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010376629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin RatA"
                     /protein_id="HCS1977077.1"
                     /translation="MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP
                     GQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRI
                     EFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSAR"
     gene            11153..11635
                     /gene="smpB"
                     /locus_tag="OQQ75_002817"
     CDS             11153..11635
                     /gene="smpB"
                     /locus_tag="OQQ75_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HCS1977078.1"
                     /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL
                     RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG
                     RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
                     "
     gene            11850..12212
                     /gene="ssrA"
                     /locus_tag="OQQ75_002818"
     tmRNA           11850..12212
                     /gene="ssrA"
                     /locus_tag="OQQ75_002818"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(12373..14677)
                     /locus_tag="OQQ75_002819"
                     /pseudo
     CDS             complement(12373..14677)
                     /locus_tag="OQQ75_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311542.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
BASE COUNT         3574 a         3966 c         3441 g         3696 t
ORIGIN      
        1 gcacctggta gcccccctga ttttcacctc actaatactg actggctgcc agtcccctca
       61 gggaaagttt actcctgagc aagtcgccgc tatgcaatct tatggattta ctgaatccgc
      121 cggcgactgg tcgctgggct tatcagatgc cattctgttc gcaaaaaatg actacaaatt
      181 gctcccggaa agccagcaac agatccaaac catggcagcc aaattggcct cgacagggct
      241 aacacatgcc cgtatggatg gacacaccga taactatggt gaagacagtt acaacgaagg
      301 cttatcattg aaacgggcga atgtcgtggc cgatgcatgg gctattggtg gacaaattcc
      361 acgcagcaat ctcaccacac agggtttagg aaaaaaatat cccatagcca gtaacaagac
      421 cgcccagggc cgcgccgaga accgccgcgt cgcagtggtg attacaaccc cttaaaacac
      481 gagcaaacag acaaaaaaag ggccagccaa ttggccagcc cttcttaaca ggatgtcgct
      541 taagcgaaat cttagttaag acgctctttg atacgagcag ccttaccagt acgctcacgc
      601 aggtagtaca gtttagcttt acgaacagca ccacgacgtt tgacagaaat gctgtcaact
      661 accggagagt gagtctggaa gacacgctca acgccttcgc cgttggaaat tttacgaaca
      721 gtgaatgcag agtgcagacc gcggttacga atagcgataa ccacgccctc gaatgcctgc
      781 agacgttttt tggaaccttc aacaacccat actttcactt ccacggtatc acccggacgg
      841 aaggaaggta cgtcctgctt catctgctct tgttcaagtt gcttaataat gttgctcata
      901 atttaatctc ttatcctggg taaactgata tctcgggggc ttacgccatc ccatcatgtt
      961 tatgttgctg ttgtgcgtgt tccgttttga actccgccag caaccttgct tgctcttcag
     1021 tcagagccag gttttccaga agttcaggtc ttctaagcca ggtacggccc agcgactgtt
     1081 tcaaacgcca gcgacgtatc tcggcatggt tgcccgacag taacactggc ggaacttcca
     1141 tcccttctaa cacctcaggc cgcgtatagt gcgggcaatc cagcaatcct tcagcaaagg
     1201 aatcttccgt tgccgaggct tcatgtccca gtacccccgg aataaaccgg gaaacggagt
     1261 caatcagcgt cattgctggt aactcaccac cactgagaac gtaatcgccg attgaccatt
     1321 cttcgtcaat ttcggtttgg atcacgcgct catctatacc ttcgtagcga ccgcacacca
     1381 gaatcaattt ttgattcgtt gccaattcgc tgacgcccgc ttgatcaagc ttgcgtccct
     1441 gtggtgacag ataaatcacc tttgcgcctt cacccgccgc ggcttttgct gcatgaatgg
     1501 cgtcccgcaa gggttgcacc atcattaaca tccccggtcc gccgccgtaa ggacgatcgt
     1561 ccacggtacg gtgccggtca tgcgtgaagt cgcgaggact ccagctctgg atgctcagca
     1621 ggccattttt aactgcccgg ccagttaccc cgtaatcggt aattgcgcgg aacatttcag
     1681 gaaacaggct aattatgcca atccacatag cgccgtcttt taccgtttat ccggtggttt
     1741 aaaaaccagg atcccaatct acttcgattg aacgagtagt gagatcgact ttcttgataa
     1801 cctgcccatc gaggaacggt acgagacgtt ccttgatacc aaacgcatct ttcaggtttg
     1861 ccttaatgac gagaacgtca ttagatccgg tttccatcat atcgacgact ttaccgagat
     1921 cgtagccttc agtggttact acctggcagc ccatcaggtc tttccagtag tagtcaccct
     1981 cttcaagctg aggcaactgc gatgaatcca cgacaatttc acaattcgtc agcaggttcg
     2041 ccgcatcacg atcgtcaacg cctttcagct tgatgatcat gtcctgattg tggtgcttcc
     2101 agctttccag ctggacttgc tgccactgac ccgccttctg gataaaccag ggctgatagt
     2161 caaaaatgct ttcggcgtct tcggtggaag aaaacactct gagccaccca cgaataccgt
     2221 aagacgaacc catttttccc aaaacgatgg gatcaacagg tgcttgcgcg gtgagttgtt
     2281 tgctcatcat gaccaccgtg acagattaag ctgctttgtt tacttctttg atcagcgcag
     2341 caacgcgatc agaaatagtt gcgccctggc caacccagtg agcgatgcga tccagatcca
     2401 ggcgagtgcc ttcttctttt tcgctagcga ttgggttgaa gaaaccaacg cgctcgatga
     2461 agcgaccgtt gcgtgcatta cggctgtcag cgacaacaac ctggtagaac ggacgctttt
     2521 tagcgccgtg acgtgctaaa cgaatagtta ccataacatc ctcttgtgtg aataaaacaa
     2581 ccggacccca tcgaggaacg gagtccggtg tcatattaaa agcccgaaaa ttttactgat
     2641 ttctggagaa aatgcaatca gcagttaata actctgtcgc ataaggtcat ttagcgacca
     2701 ggaaatcccg gcggcatcat ccccttcatg cttctcatca tcttcgccat tccgcccttc
     2761 ttcattttct tcatcatgcg ctgcatgtcg tcgaactgtt tcagaagacg gttaacgtcc
     2821 tgcacctgca taccgcaacc ggcagcaata cggcgtttac gcgaaccttt gatgatttct
     2881 ggcttagcgc gctctttcat cgtcatcgag ttgatgatgg cttccatacg caccagcact
     2941 ttatcgtcca tctgtgactt gacgttatcc gggatctgcc ccatgcccgg cagcttgccc
     3001 atcaggctgg ccatgccgcc catatttttc atctggcgca gctgctcaag aaagtcgttg
     3061 agatcgaagc cgtcaccttt tttcagcttg ctggctaatt tctctgcctg cgcgcggtca
     3121 actttgcttt cgatatcttc gatcagcgac agtacgtcgc ccatgccgag aatacgcgac
     3181 gcgatgcggt ccggatggaa cggctccagc gcctcagttt tctcgccaac accgaggaac
     3241 ttgatcggtt tgccagtgat gtgacgaata gagagcgccg caccgccgcg ggcatcgccg
     3301 tccactttgg tcaacactac gccggtaagc ggtaacgctt cattgaatgc ttttgccgta
     3361 ttggccgcat cctgaccggt catggcgtca accacaaaca gggtttcaac cgggttaatc
     3421 gacgcatgga cttgtttgat ctcgtccatc atcgcttcgt caacgtgcag acgaccagcg
     3481 gtatccacca gcagcacgtc gtagaatttc agtttggctt ctttcagcgc cgcgttaacg
     3541 atatctaccg gcttctgacc aacatcagaa gggaagaaat caacgcccac ctgctctgcc
     3601 agcgtctcaa gctgtttgat tgccgccggg cgataaacgt cggcagaaac caccagcact
     3661 ttcttcttgt gcttctcgcg caggaactta ccgagtttac caacgctggt tgttttaccg
     3721 gcaccttgca ggcccgccat cagcacgacc gcaggcggtt gcgccgccag gttcagggtc
     3781 tggttctctt cgcccatcgc cgcaaccagt tcgttacgga cgattttgac gaactcctgc
     3841 cccggcgtca ggctcttatt aacttcatga ccaaccgctt tctcttttac gcgattgata
     3901 aactcacgca ctaccggcag agcgacatcc gcctccagca gcgccatgcg cacttcgcgc
     3961 agcgtatctt ttacgttgtc ttcagttagg cgtccacggc cactgatatt gcgcagcgtg
     4021 cgcgacaaac gatcggttaa attatcaaac attgtctctc gcctggggtg gaaacggttg
     4081 gccgcaatcg cgacacatca tcagtatttt gccgcagtat aacatgaagg cgtctttgtt
     4141 gttatgcaac ggttggagca gcgttcacct gacgctatac tgcttctctt tcttattgct
     4201 caaactgttg acatcactat gcccgttttt gctctgctcg cgcttgtcgc ctactccgtc
     4261 agtcttgcgc tgattgttcc cggtctgctg caaaaaaacg gcggctggcg gcgcatggct
     4321 attatttctg cggtcattgc gctggtctgc cacgcaatcg ctctggaagc ccgcatcctg
     4381 cccgacggtg atagcggaca aaacctcagc ctgctgaacg ttggttcatt ggtcagtttg
     4441 atgatctgta cggtaatgac cattgtggct tctcgcaatc gtggctggtt gctgctaccc
     4501 attgtctatg cctttgcgct tatcaacctg gcgctggcga ccttcatgcc caatgaatac
     4561 atcacccatc tggaagcaac gcctgggatg ctggtgcaca ttggcttatc gctcttttcc
     4621 tatgccacgc taattatcgc cgccctgtac gcgctgcaac tggcgtggat tgattaccaa
     4681 ctgaagaaca agaagctggc atttaaccag gaaatgccgc cattgatgag tatcgagcgt
     4741 aaaatgttcc acatcacgca gattggcgtg gtgctgctaa cgctcacgct ttgcactggc
     4801 ctgttctaca tgcacaacct atttagcatg gaaaatatcg acaaggctgt gctctctatc
     4861 gtggcgtggt ttgtctatat tgtgctgctg tggggacatt accatgaagg atggcgtgga
     4921 cgccgcgtcg tctggtttaa cgttgcgggc gcggtaattc tgacactggc ctacttcggc
     4981 agccgaattg tccagcagtt aatcagctaa acccagaaaa ggagtttccc ctggaacaca
     5041 tttctactac tacgttgatc attattctga tcatcatggt ggtcatttca gcctattttt
     5101 ccgggtccga aaccggaatg atgaccctca accgctatcg tctgcgacat atggcgaaac
     5161 agggtaatcg ctcggccaaa cgcgtcgaaa aattgctgcg taagccagac cgcctgataa
     5221 gcctggtgtt aatcggcaat aacctggtca atattcttgc ctccgcgctc ggcactattg
     5281 ttgggatgcg tttgtacggc gatgcgggcg tggcaattgc gactggtgtg ctgacttttg
     5341 tcgtactggt atttgctgag gtattgccga aaaccattgc cgcgctgtac ccggaaaaag
     5401 tcgcttatcc gagtagtttt ctgctggctc cgctgcaaat tttgatgatg ccgctggtct
     5461 ggttgctgaa tgctatcacc cgtatgctga tgcgcatgat gggtatcaaa accgatatcg
     5521 tggttagcgg ctctttgagc aaagaagagt tgcgcactat cgtgcacgaa tcacgctcac
     5581 aaatttcccg tcgcaatcag gatatgctgc tgtcggtgct cgatctggaa aaaatgaccg
     5641 ttgatgacat catggtgccg cgcagtgaaa ttatcggtat tgatatcaac gatgactgga
     5701 aatcgattct gcgccaactc tcccactcac ctcacgggcg catcgtgctc taccgtgatt
     5761 cgctggacga cgccatcagt atgctgcgag tacgtgaagc ctggcgattg atgtcggaga
     5821 aaaaagagtt caccaaagaa accatgctgc gcgccgcgga cgagatctat tttgtgccgg
     5881 aaggtacgcc gctcagcacg cagttggtaa agtttcagcg caacaaaaag aaagtcggcc
     5941 tggtcgtcaa cgagtatgga gacattcagg ggctggtgac ggttgaagat attctggaag
     6001 agattgtcgg cgatttcact acgtcgatgt cgccaacact tgccgaagag gtcacgccgc
     6061 aaaacgacgg ttcggtgatt atcgatggca ccgccaacgt gcgggaaatc aacaaagcct
     6121 ttaactggca tctaccggaa gatgatgccc gcacggttaa tggcgtcatt cttgaggcac
     6181 tggaagagat ccctgtcgca ggcacccgcg tgcgtattgg cgagtacgat atagatattc
     6241 tcgacgtaca ggacaatatg attaagcagg taaaagtttt tcctgtgaaa ccgctgcgcg
     6301 agagtgtggc ggagtaacga aaacggccct gcattcgcat gcagggccgt gaattattac
     6361 gaaaacagaa attacgcttt tgctttcgct acagttacca tcgccgcacg aatcgtacga
     6421 ccattcagcg tataaccctt ctgcataatg cccagtacgt tacctggcgc aacgtcatca
     6481 gattccacca ttgcgatagc ctgatgcaca ttcgggtcca gcggcacgtt agtttcggcg
     6541 atcacttcaa caccaaactt acgcacaaca tccagcatcg acttcagcgt cagctcaatg
     6601 ccttcaacca tcgcagacat atccgggtta gctttatcag ccacttccag cgcacgatcc
     6661 aggctatcaa tcaccggcag caattcgttg atgaatttct ccagcgcaaa tttgtgggct
     6721 ttttcaatat ccagttcagt acgtcgacgc aggttttcca tttcggcttt tacacgcaaa
     6781 atgccgtcac gttcacgggt ctgggcttca gccagctgag cttcgagatt cgcaattttt
     6841 tcatcgcgcg gatccacctg ctcagcagaa gcttctggct caactgcctc aatctcttcg
     6901 tgctgatcca tgataatttc ttccggggct tgcccctcag gcgttttctg ttctttacta
     6961 ctcatgaatt tctccgcgtt tttttcgcat tcatctcgct aacttcgctt attatgggga
     7021 tcagtttcag ggtttcaagg gaagcactca cattgtcatc aatcttcgca acaaggacct
     7081 cggaaaaatg aataatcatt tcaagtgtat tggcattgtg ggacacccac ggcaccccac
     7141 tgcactgaca acacatgaaa tgctctaccg ctggctgtgc aaaaaaggtt acgaggtcat
     7201 cgttgagcaa caaatcgctc acgaactgca actgaagaat gtgaaaactg gcacgctcgc
     7261 ggagattggg caactagctg atctcgcggt agtcgttggt ggcgacggta atatgctggg
     7321 cgcggcacgc acactcgccc gttacgatat taaagttatt ggaatcaacc gtggcaacct
     7381 gggtttcctg actgaccttg accccgataa cgcccagcaa cagttagccg atgtactgga
     7441 aggccactac atcagcgaga aacgtttttt gctggaagcg caagtctgtc agcaagattg
     7501 ccagaaacgc atcagcaccg cgataaatga agtggtgctt catccaggca aagtggcaca
     7561 tatgattgag ttcgaagtgt atatcgacga gatctttgcg ttttctcagc gatctgatgg
     7621 actaattatt tcgacgccaa caggctccac cgcctattcc ctctctgcag gcggtcctat
     7681 tctgaccccc tctctggatg cgattaccct ggtgcccatg ttcccgcata cgttgtcagc
     7741 acgaccactg gtcataaaca gcagcagcac gatccgtctg cgtttttcgc atcgccgtaa
     7801 cgacctggaa atcagttgcg acagccagat agcactgccg attcaggaag gtgaagatgt
     7861 cctgattcgt cgctgtgatt accatctgaa tctgattcat ccgaaagatt acagttattt
     7921 caacacatta agcaccaagc tcggctggtc aaaaaaatta ttctaatttt acgccagcct
     7981 ctttactgta tataaaacca gtttatactg tacgcaataa cagtaatggt ttttcataca
     8041 ggaaaacgac tatgttggca caactgacca tcagcaactt tgctatcgtt cgtgagcttg
     8101 agattgattt tcatagcggc atgaccgtaa taactggcga gaccggcgcg ggtaaatcta
     8161 ttgcaataga tgccctcggt ctttgtctcg gtggtcgcgc tgaagccgac atggtgcgta
     8221 ccggcgctgc tcgcgctgac ctgtgcgccc gtttttctct gaaagatacg ccagcggctc
     8281 tgcgctggct ggaagaaaat cagcttgaag acgggcatga atgtttgctt cgtcgcgtaa
     8341 tcagcagcga tggtcgctcc cgtggtttca tcaacggtac agctgttcct ctgtcacaac
     8401 tgcgcgaact gggtcagttg ctgattcaga tccatggtca gcacgctcat caattactca
     8461 ccaaacctga gcaccaaaaa ttcctgcttg atggctatgc caatgaaacc tctctactgc
     8521 aggaaatgac cgcacgttat cagttgtggc atcaaagctg ccgtgacctc gcgcatcatc
     8581 aacagttaag tcaggaacgc gccgcccgtg cggaactgct gcaataccaa ttaaaagaac
     8641 ttaacgaatt taatccgcag cccggagagt ttgaacaaat cgacgaagag tacaaacgtc
     8701 tggcgaacag cggtcaattg ctgaccacca gccagaatgc attggcatta atggcctacg
     8761 gtgaagacgc aaacctgcaa agtcagcttt acacggctaa acaactggtg agcgaattga
     8821 ttggcatgga cagcaaactg tccggcgtac ttgatatgct ggaagaagct accatccaga
     8881 ttgctgaagc cagcgatgaa ctgcgccact actgcgatcg tctggatctc gatcccaacc
     8941 gactatttga acttgaacag cgcatctcaa aacagatttc gctggcacgt aaacatcacg
     9001 tcagccctga ggcattgcca cagtattacc agtcgctact ggaagaacag cagcaactgg
     9061 acgatcaggc cgactcacaa gaaacgcttg cgctggcggt aacgaaacat catcagcagg
     9121 cactggaaat cgcgcgcgca ttacaccaac aacgccagca atatgcagaa gaacttgcac
     9181 agctgatcac cgacagtatg catgcgctct caatgccgca tgggcagttt acgatcgatg
     9241 ttaaatttga cgagcatcac ctgggcgctg acggtgccga tcgtattgag tttcgggtaa
     9301 ccaccaaccc aggtcagcca atgcagccta ttgccaaagt cgcatccggt ggtgaattgt
     9361 cccgcatcgc actggcaacc caggtcatca cggcgcgtaa aatggaaacc ccggcactga
     9421 tttttgatga agtggatgta gggattagcg gtccaacagc ggcagttgtc ggcaaactgc
     9481 tgcgtcaact cggcgaatca actcaggtga tgtgtgttac ccacctgcca caagtcgcgg
     9541 gatgtggtca tcaacactat tttgtcagca aagaaaccga tggtgcgatg acagaaacgc
     9601 atatgcaatc cctgaataaa aaagcgcggt tacaagagct ggcgcgcctg cttggtggca
     9661 gtgaagtcac acgtaataca ctggcgaatg cgaaagaact gcttgcagcg taaacttttt
     9721 tcctgcttca cggtcagagt aaacagcaaa acgccgtaag accggaaagc aaaaggtttt
     9781 aaagtgatga aaggtctatt atcatcggca tattacagat gagccacgta ctgctagggc
     9841 ccgaaaagga atcaaatcac tatgcgctgt aaaacgctga ctgctgcagc agcagtacta
     9901 ttgatgttga ccgcaggctg ttccactctg gagcgagtgg tttaccgtcc tgacatcaac
     9961 caggggaact atctgaccgc taacgacgta tccaaaatac gtgttggcat gacgcaacaa
    10021 caagttgcgt acgcattggg tacaccgctg atgtccgatc catttggtac gaatacctgg
    10081 ttctatgtct tccgccagca accaggtcat gaaggtgtaa cgcagcaaac gctgacgctg
    10141 acctttaaca gtagcggtgt gttgaccaat attgataaca aacctgcgct gagtggtaac
    10201 taataataaa gttgctctca aagacgttaa aaaaggtgct caatgagcac cttttttctg
    10261 tctgttattt attcgctgat ttttctgctc gttgcctgcg aagctctttc ggatcggcaa
    10321 tgagagggcg ataaatctcc acccgatcgc catcatgcac actatcgctt agttttgccg
    10381 gacggctgta aatgccgact ttgtttttag ttaaatcgat atcggtacgc aattccagca
    10441 agccactggc gcgaatagct tcttcaaccg tcgcgccctc ctgcagcgtc acgcgctgca
    10501 ggtactgctt ctcaggtagc gcataagcca cctcaacggc aattttacct ggcactgtaa
    10561 acctctttcg cacgaaccgt aaaagcctgg accatattag acgccagctc tttaaacacg
    10621 cgaccaaagg cgagttcaat caacttattg gtaaactcaa agtcgagatg aaactcgata
    10681 cgacacgcct cctggctcag cggcgtaaac ttccatccac caatcaattt cttgaacggc
    10741 ccatccacca gattcataag aatactttgg ttactggtca actggttgcg ggtagtaaac
    10801 gttttgctga tcccagcctt agagacatct accgccgcag tcatctgccc aggagtggac
    10861 tccagaatcc gacttccggt acaacccggc aaaaactgag gataagactg aacgtcattc
    10921 actaactgat acatttgctc cgcgctgtag ggtaccagtg cggtccggct aatctgaggc
    10981 ataactattt ccatcaacaa aaatccaaca aataatatca tttatcctgc tgtaaaaaaa
    11041 acgctatccc ggcgctgggt aacatcgggt tcatgctaag atagagcctt gtcccccgca
    11101 ggattgatat ggggtgtttt cgatttcaga ttaccgatga ttcacgacgc ttatgacgaa
    11161 gaaaaaagca cataaacctg gttcagcgac catcgcgctt aacaagcgcg cccgtcacga
    11221 atactttatc gaagaagagt tcgaagcggg acttgccctg caaggctggg aagttaaatc
    11281 cctgcgcgca ggaaaagcca atatcagcga cagctacgtc cttctgcgtg acggagaggc
    11341 atttctgttt ggcgctaaca tcacgccaat ggccgtggcc tccacgcatg tggtgtgcga
    11401 tcctacccgt acccgcaagt tacttctcaa ccagcgcgaa ctggactcat tgtacggtcg
    11461 cgtcaatcga gaaggctata ccgtagtggc gctctccctg tactggaaaa atgcctggtg
    11521 caaagtgaaa atcggcgtcg ccaaaggtaa aaaacagcac gataaacgtt cagatatcaa
    11581 agaacgcgaa tggcaggtgg ataaagcacg tatcatgaaa aacgcccacc gttaaacctg
    11641 cactccaatt attgaccagt tcctcaccgc gcctccctct ccggcggcgc gaatgaacat
    11701 cttattggct atcacatccg acacaaatgt tgccatccca ttgcttaatc gaataaaaat
    11761 caggctacat gggtgctaaa tctttaacga taacgccatt gaggctggtc atggcgctca
    11821 taaatctggt atacttgccg ttacacattg gggctgattc tggattcgac gggatttgcg
    11881 aaacccaagg tgcatgccga ggggcggttg gcctcgtaaa aagccgcaaa aaatagtcgc
    11941 aaacgacgaa aactacgctt tagcagctta ataacctgct tagagccctc tctccctagc
    12001 ctccgctctt aggacgggga tcaagagagg tcaaacccaa aagagatcgc gtggaagccc
    12061 tgcctggggt tgaagcgtta aaacttaatc aggctagttt gttagtggcg tgtccgtccg
    12121 cagctggcaa gcgaatgtaa agactgacta agcatgtagt accgaggacg taggaatttc
    12181 ggacgcgggt tcaactcccg ccagctccac caatcatgat tggacggtat aaggacaaca
    12241 ccaataaaaa caggaggtta gcagtctcag caggacaccg accagacggt gaagagacat
    12301 aaaaggatac gcaaaggagc cgcggctcct ggtgacatga aagcccacag atgtgggctt
    12361 tttcgttgat ggtcagaacg accagttcac accagctacc ccgttccacg gggattccac
    12421 accggcacca tggctatacc ccaccccaag atgcccgctt aacgtactgc tgaatgaggc
    12481 tttaatacct gcctggtata ttccacgtct gcccgacaaa tcattgacga aattaccgtc
    12541 actattcact ttcacccggt tatcatcgac aaattctttg cgcacagccg ccttcagcca
    12601 cggctcaact tccataccgt tccccagacg catgttgtaa ctcagcgttg cacccagttc
    12661 acgatataaa cctgcgggta tcgactgatt tcgattccat gccattggat aaatgatatt
    12721 cagggttatc agcggtgaac ccccgttaac gatgcatacg gcgtcaggtt ccagttacca
    12781 tcggtaaatc gcatcccggt ttcaatgtga ccgcccagcc cgttgctgcg ataactgccg
    12841 ttggtggctc caccgctgcc aaccgtggag tcgcgagctt cggtacctgc taataccaat
    12901 aaattaccgc cattttccag caacatattg gtcgctaaat tgccggaaat ggaaaaagtg
    12961 ccgtactggt gagtaccgct gatttcaata ccgttagccg tgctcgtctg gagagcggca
    13021 ccgctgttct ggacgatatc tgtcgctttg ccattatcgt taactgtcag cgtaccgcct
    13081 tcattgatct ttgtttttat tgcctctccg ttagctgaaa ctgtttgtat tccgccgtcg
    13141 ttaatcgttg tctcattcgc caccccctcg acgatttgtt cgccgccggt gagcgtcgtg
    13201 cctgtcgcag tggcttttgt tttgacgatc tcccgtccgc ccgtattgac ctgtgttttg
    13261 tcagaagagg tgtctgactc cacggttaac acgccgccat ttgccagcag gatattgttc
    13321 gccgcaccct gctcgatgct gaacgcgacg ccatccgcgc gtgttcctgt gacccgcgtc
    13381 gccctggtgg ttgcaaccaa agcgccctgg ctactctgct gtatccccgt tgcgctgcct
    13441 ttctcccgca catcgagtgt gccgccgtca ttaagcaccg agttttcagc cagaccgccc
    13501 tcattaacta cctgtgaacc cccattaata atggaacctt ccgctgtccc gtttgccata
    13561 atttgttgta ggccagagac gatatcggta ttgattgcct taccataatt ctgaacggtt
    13621 tgcgtgccac cattgatgtg tgttttctct gttgacccac catcaacaat ttgttcacca
    13681 ctttcgatat ttgcctcagt ggctaatcca tataccgttt gcttgccacc tttgatattt
    13741 gctttatcag aagtggcact ggcatatatt gtttgggtgc cagcactatt gagtacagtg
    13801 ccaacatctt ttccataaac atccattttg ccgttggcat taataatcgt atcaactgcc
    13861 cgggaaccag tgacgactgt taatgagcca gcgttttcca gcactacatt tttagcttct
    13921 gaattcctga tgtagaaagc atcaccataa ctgttggttc ctttgataag ggttccggaa
    13981 gttgtggaag caattaatgc gccgccggat tgttgctcaa catgcttagc ctcaccaccg
    14041 tcctgaacct ccagaacgcc accattatta agtctggtgg tatctgtttt agcctccttc
    14101 tggacaatca gcttaccgcc agcatcaacg gtagtatttt tcgccgaggt tttagccact
    14161 accgtcagtt cgccggtatt ttccagcaca acataattag cctcccctcc gggtaatagt
    14221 gaagtgagag agcttgttgt atccttcgat atcagtccct gcgcccgtgt tggcaactaa
    14281 agcactgccc gtctcctggt taaccccatg tgctataccg ccggtataga caatcagcga
    14341 gcctccggcg ctaatattgc tgccagttgc cgtaccatct ttctcaacaa cctgccggct
    14401 cccggtggaa atatttgtcg tgtcagcttt cccgccgctc ttgatatttt gtgttccgct
    14461 gttgatattg gtacccgtgg caataccatg attattaata ttctgtgtac caccattgat
    14521 tatggtattg gtcgcgtttc cggtaacatc cattaccccg ccgttatcta ttcgggtcgc
    14581 atcagcttta gcattcgtta aaactgacat tgttccttta tctttaataa tcgtcttatt
    14641 tgccgaacca tatgcgttta tgtctaaatg accaccg
//
LOCUS       DAJVUP010000104        14558 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.104, whole genome shotgun sequence.
ACCESSION   DAJVUP010000104 DAJVUP010000000
VERSION     DAJVUP010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14558
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.104"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ75_002820"
     CDS             complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ75_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1977079.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVE"
     gene            complement(280..2394)
                     /gene="fusA"
                     /locus_tag="OQQ75_002821"
     CDS             complement(280..2394)
                     /gene="fusA"
                     /locus_tag="OQQ75_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HCS1977080.1"
                     /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKT
                     RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW
                     HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ
                     AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT
                     FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT
                     TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD
                     EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ
                     SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL
                     AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP
                     EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM
                     EFLKYDEAPSNVAQAVIEARGK"
     gene            complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="OQQ75_002822"
     CDS             complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="OQQ75_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HCS1977081.1"
                     /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY
                     SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW"
     gene            complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="OQQ75_002823"
     CDS             complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="OQQ75_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HCS1977082.1"
                     /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
                     DCSGVKDRKQARSKYGVKRPKA"
     gene            complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="OQQ75_002824"
     CDS             complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="OQQ75_002824"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HCS1977083.1"
                     /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL
                     ESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYTDFVRLTVKHSSQMAW"
     gene            complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="OQQ75_002825"
     CDS             complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="OQQ75_002825"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HCS1977084.1"
                     /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV
                     FQLLSGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE
                     ADALRRELANYDVILRF"
     gene            complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="OQQ75_002826"
     CDS             complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="OQQ75_002826"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HCS1977085.1"
                     /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIVEGHELSSVFFYRGGV
                     YNANQLTSPASDEFDLVRGWQQLNAQHGVALNICVAAALRRGIVDETEAGRLGLASSN
                     LQPGFTLSGLGALAEASLTCDRVVQF"
     gene            complement(4598..5320)
                     /locus_tag="OQQ75_002827"
     CDS             complement(4598..5320)
                     /locus_tag="OQQ75_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1977086.1"
                     /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG
                     SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT
                     RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFA
                     SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI
                     SKHTVYLYIRQFKSGDFQGQDK"
     gene            complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="OQQ75_002828"
     CDS             complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="OQQ75_002828"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1977087.1"
                     /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATTADSKAAFKND
                     DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL
                     QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA
                     PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV
                     IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK"
     gene            6520..6738
                     /locus_tag="OQQ75_002829"
     CDS             6520..6738
                     /locus_tag="OQQ75_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HCS1977088.1"
                     /translation="MQDLSLEARLAELESRLAFQESTIEELNVTVTAHEMEMAKLRDH
                     LRLLTEKLKASQPSNIASQAEETPPPHY"
     gene            complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="OQQ75_002830"
     CDS             complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="OQQ75_002830"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1977089.1"
                     /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG
                     LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ
                     GPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
                     DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH"
     gene            complement(7472..7672)
                     /locus_tag="OQQ75_002831"
     CDS             complement(7472..7672)
                     /locus_tag="OQQ75_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative metal-binding protein"
                     /protein_id="HCS1977090.1"
                     /translation="MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMRE
                     ADKEARDHVRKDEQVIGIFHPD"
     gene            complement(7682..9493)
                     /gene="kefB"
                     /locus_tag="OQQ75_002832"
     CDS             complement(7682..9493)
                     /gene="kefB"
                     /locus_tag="OQQ75_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefB"
                     /protein_id="HCS1977091.1"
                     /translation="MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGP
                     WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALL
                     AGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV
                     IPALALVPLLAGSADEHFDWMKIGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFT
                     AATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFI
                     SVGMSLNLGVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGG
                     EFAFVLFSTASSQRLFQGDQMALLLVTVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEE
                     DEKPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYY
                     GDATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHE
                     LLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHA
                     DTVQISRAREARRELEEIFQREMQQERRQLDGWDEFE"
     gene            complement(9493..10044)
                     /gene="kefG"
                     /locus_tag="OQQ75_002833"
     CDS             complement(9493..10044)
                     /gene="kefG"
                     /locus_tag="OQQ75_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     ancillary protein KefG"
                     /protein_id="HCS1977092.1"
                     /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHY
                     PDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAG
                     KYWRNVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSA
                     KELANHARAYGDWLANPLSPGGR"
     gene            10170..12083
                     /locus_tag="OQQ75_002834"
     CDS             10170..12083
                     /locus_tag="OQQ75_002834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1977093.1"
                     /translation="MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL
                     ALLKNEISADGGSYTFPGSWQLAWVNQETPALSQAALEYVIDGDREYRQLEAQLHDAN
                     ERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH
                     IEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA
                     QSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADE
                     SPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPF
                     DGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIAR
                     LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ
                     EQLEQMLLEGQSN"
     gene            12083..13105
                     /locus_tag="OQQ75_002835"
     CDS             12083..13105
                     /locus_tag="OQQ75_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1977094.1"
                     /translation="MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFT
                     PYWQRLELPDGDFVDLAWSEAPAQARHKPRLVIFHGLEGSLNSPYAHGLVEAAQKRGW
                     LGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA
                     CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAY
                     PGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIH
                     AKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTY
                     LEAKSC"
     gene            13099..13317
                     /locus_tag="OQQ75_002836"
     CDS             13099..13317
                     /locus_tag="OQQ75_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HCS1977095.1"
                     /translation="MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKR
                     QLQCGEAVLVWSELHETVNIMPRSQFRE"
     gene            13371..14240
                     /locus_tag="OQQ75_002837"
     CDS             13371..14240
                     /locus_tag="OQQ75_002837"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HCS1977096.1"
                     /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF
                     HRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYD
                     EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE
                     WIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFA
                     AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML
                     PLVQRLMEGKKIE"
     gene            complement(14295..>14558)
                     /locus_tag="OQQ75_002838"
     CDS             complement(14295..>14558)
                     /locus_tag="OQQ75_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HCS1977097.1"
                     /translation="SAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIV
                     TGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA"
BASE COUNT         3598 a         3970 c         3586 g         3404 t
ORIGIN      
        1 tattcaacgt gagaagtgtt gatggtgata ccacgagctt tttcttccgg cgcgttatcg
       61 atctggtcga atgcacgagc agcaccgccg taggttttag ccagtacggt ggtgattgca
      121 gcggtcagag tagttttacc gtggtcaacg tggccgatag taccaacgtt aacgtgcggt
      181 tttgtacgtt caaatttttc tttagacacg gctatattcc ttactatagt gctctcccct
      241 tcaggagaga gcacgggact ttggtattaa cccttaggct tatttaccac gggcttcaat
      301 tacggcctga gcaacgttac tcggcgcttc atcatacttc aggaattcca tagtgtatga
      361 tgcacgacct ttggtcagag aacgcagctg agttgcgtat ccgaacattt cagacagcgg
      421 tacttcagcg tggatcttaa cgccagtaac ttcagattcc tgacctttga gcataccacg
      481 acgacggctc aagtcaccga taacgtcacc ggtgttctct tccggagttt ctacttcaac
      541 cttcatgatc ggctcaagca gaactggttt cgctttctta aagccttctt taaaggcgat
      601 agaagcagcc agtttaaacg ccagttcaga ggagtcaacg tcatggtaag aaccgaagtg
      661 cagacgaata cccatgtcta ctaccgggta gcctgccagc ggacctgctt tcagctgttc
      721 ctggatacct ttatcaacgg ccgggatgta ttcgccaggg attacaccac ctttaatgtc
      781 gttgatgaac tcgtagcctt tcgggtttga acccggctcc agcgggtaca tgtcgataac
      841 aacatgacca tactgaccac gaccaccaga ctgtttcgcg tgtttacctt caacatcggt
      901 aactttctgg cggatagttt cacggtaagc aacctgcggt ttacctacgt tcgcttcaac
      961 gttgaattca cgcttcatac ggtcaacgat gatgtcgagg tgcagttcgc ccatacccgc
     1021 gatgattgtc tggttagatt cttcgtcagt ccatacacgg aaagacgggt cttctttagc
     1081 cagacggccc agagccagac ccattttttc ctggtcagct ttggttttcg gttcaactgc
     1141 gatggagatt accggctcag ggaattccat acgttccaga atgatcggcg catccgggtc
     1201 acacagggtg tcaccagtgg ttacgtcttt cagaccgata gcagcagcga tgtcgcccgc
     1261 gcgaacttct ttgatctctt cacgtttgtt agcgtgcatc tgaacgatac gaccgaaacg
     1321 ctcacgtgca gctttcacgg agttcagtac ggtatcacca gagttaacca caccggagta
     1381 aacacggaag aaggtcaggt taccaacaaa cgggtcggta gcgattttga acgccagtgc
     1441 agagaacggc tcgtcatcac ttgcgtgacg ttcagccgga gtgtctttac cgtcgtccag
     1501 gataccgttg atcgcaggta cgtcaaccgg ggatggcagg taatcaatta ccgcatccag
     1561 catcgcctga acacctttgt tcttgaacgc agaaccacag gttaccagga tgatttcgtt
     1621 gttcagaacg cgctgacgca gagcaccttt gatttctgct tcagtcagtt cttcaccacc
     1681 caggtatttt tccatcagct cttcagaagc ttcagctgcg gattcgatca ggttctggtg
     1741 ccattcgtta gccagttcaa ccatgtctgc cgggatatct tcgtattcga aggttacgcc
     1801 ctggtcagcg tcgttccagt taatagcttt cattttcacc aggtcaacaa caccggtgaa
     1861 atgttcttca gcaccaatcg ccagctgcag cggaaccgga ttcgcgccca gacgggtttt
     1921 gatctggtta acaactttca ggaagttcgc acccatgcgg tccattttgt taacgaacgc
     1981 aatgcgcgga actttatatt tgtttgcctg acgccatacg gtttcagact gcggctgaac
     2041 accaccaact gcgcagtaaa ccattaccgc accatcgaga acacgcatgg aacgttctac
     2101 ttcgattgtg aagtcaacgt gccccggggt gtcgatgatg ttgatgcgat gcggctcata
     2161 ctgcttagcc ataccagacc agaatgcagt agtcgcagcg gaagtgatgg taataccacg
     2221 ttcctgctcc tgctccatcc agtccatggt tgcagcgccg tcatgaactt cacctatttt
     2281 atggtttaca ccggtgtaga acagaatacg ttcggtagta gtggttttac cggcgtcgat
     2341 gtgcgcactg ataccgatgt tacggtagcg tgcgatgggt gttgtacgag ccatttgttt
     2401 cctcgtttat cttttaggcg ttcaatttaa gtagcccaaa gcgggctgct tactggaagc
     2461 gcccgcctgg tgactaaaac tccgaaggga ttaccaacgg tagtgtgcga acgccttgtt
     2521 ggcttcggcc atacggtgaa cgtcttcacg tttcttaact gcagtacctt tgttttctgc
     2581 agcatcagaa agttcgttcg ccaggcgcag agccatggat ttatcaccgc gtttacgagc
     2641 agcttcaacg atccaacgca ttgccagagc attacgacga accggacgga cttcaactgg
     2701 tacctgataa gtagaaccac caacgcggcg agacttaact tctacagtcg ggcgcacgtt
     2761 ttcgagagct acttcgaatg cttccagttc agatttacca gagcgctgag ccagggtctc
     2821 cagcgcgctg tatacgatag attcagcagt agatttttta ccatctacca tcaggatatt
     2881 tacaaattta gccagcagtt ctgatccgaa cttcggatcc ggcagaattt tacgctgacc
     2941 aatgacgcga cgacgtggca tggaaatact ccgttgttaa ttcaggattg tccaaaactc
     3001 tacgagttta gtttgacatt taagttaaaa cgtttggcct tacttaacgg agaaccatta
     3061 agccttagga cgcttcacgc catacttgga acgagcctgc ttacggtctt taacgccgga
     3121 gcagtcaagc gcaccacgta cggtgtggta acgaacaccc gggaggtctt taacacgacc
     3181 gccacggatc aggatcacgg agtgctcctg caggttgtga ccttcaccac cgatgtagga
     3241 agtcacttcg aaaccgttag tcagacgaac acggcatact ttacgcagcg cggagttcgg
     3301 ttttttagga gtggtagtat atacacgagt acatacgcca cgtttttgcg ggcatgcttc
     3361 cagcgcaggc acgttgcttt tcgcaacttt gcgagcacgt ggtttgcgta ccagctggtt
     3421 aactgttgcc attaaatagc tcctggtttt agcttttgct tcgtaaacac gtaataaaac
     3481 gtcctcacac aatatgagga cgccgaattt tagggcgatg ccgaaaaggt gtcaagaaat
     3541 atacaacgat cccgccatca ccaggccatc tggctggagt gcttaaccgt aagtctgacg
     3601 aaatcagtat agtcaatggg aatgatgtcg ttcgaaattt gaccagtcaa accgcgggca
     3661 ataaggtctt cgttcagggc atagacctta atgggggcat tacgcagact ttcaaggtag
     3721 cggttaccgt caactgcggc agttacgcca tcttgcaata atagcagttc gtctccttca
     3781 ctgagcagac gcagcagcgc agcaaaatcc gtcagccagg gtgaacgatg taacgtgtgc
     3841 agcataaacg cctcaaaacc tcaaaataac atcgtagttg gcgagttcgc ggcgtaaggc
     3901 atctgcttcg agcggcgtgg cttcgacaac aaagggtgtc tgcggatcta acccgcgttc
     3961 gcgcagtgaa gccgcacaaa cccagcactg ttcaatgtcg tacagaccca acaatttaaa
     4021 agtggcaatg taatcacgcg ccagcactgc atcgggcttt tgtcctgaca gcagctgaaa
     4081 aacgccatca gcaataaaga agacggccag atcgtcagtt aatgcggaag ttgccagtaa
     4141 agcatctaaa ccttcccgac cagcagctgt accatgaggt gcagtagaaa aaacaaacgc
     4201 aattcgtttc atcagaactg taccaccctg tcacaggtca gcgaggcttc cgccagcgcg
     4261 ccaagtccgc ttaaggtaaa tcccggctga aggtttgacg aagccagccc cagccttcct
     4321 gcttcagttt catcgacgat accgcggcgt aacgctgccg ctacgcagat attcagcgcc
     4381 acaccatgtt gcgcattcaa ctgttgccag ccgcgcacaa ggtcaaattc gtcacttgcc
     4441 ggtgaggtca attggttagc gttatagacc cctccccgat agaaaaagac gctgcttaac
     4501 tcatggcctt ctactatcag cgcctgcgca aactgaaaag cactactcgc ctgttgcgta
     4561 ccgtatgctg gcccggtcac cacgatggca aaacgcatta cttatcttgc ccctggaaat
     4621 caccgctctt gaactggcgg atgtagagat agacagtgtg tttggagatg ttcaggcggt
     4681 cagcaacctg gttgatcgca tctttaatat cgaagatccc tttctcgtag agattcagca
     4741 cgatctgacg atttttggcg ttattagaaa cattgcgatc ggcattcact tcttcgatgg
     4801 tgaactccag cgtttgggta accagatctt caacagaaga ggcaaagttg acgcttgaac
     4861 cgacatccgg ggtttctggc ggcacaaaag tgctcataat ctgcgagaag ggaacatcaa
     4921 gattcatatt gatgcacagc agaccaatta cacgctgttc gcggttacga atcgcgatag
     4981 tcagggactt cattaatacg ccgcttttgg cgcgagtaaa gtagcattta gaaacgctgc
     5041 tatccgctcc cgtcatatcg tgcagcatac gtagcgccag gtcagtaatt ggcgaaccaa
     5101 tcttccggcc tgtatgttca ccgttagcaa tgcgaatggc tgaacatttt agatcctgca
     5161 aagagtgcaa aacgatttca cagtgggagc caataagcat cgctaacccg tccaccaccg
     5221 cttcgtagga tttcagaata tcaaaatcgg tctggtcgaa aggacgttga tccagtaaat
     5281 ccaactcact ggtttcgttg gttaaaagcg acctggacat gaaaaaaaac actccttttc
     5341 aggagcctgt cgttaacttt tcagggcagg ctcattaatg atgcgggtaa ctaaattaat
     5401 acagcggagg ttccgctttc cagcactaat tatatccggc ctgtaataaa aaaaccgccg
     5461 cctggtcagg cggcggttct taatgcttat tttttagcag aatctgcggc tttcgcatca
     5521 gcttccggct ttgcatcagc cttcggtgct ggtttcacat ccagcagctc tacgtcaaac
     5581 accagggtag aattcggtgg gatccccgga acacccgctt tgccgtaagc cagttctggt
     5641 ggaataacca gtttgatctt accgcctttc ttgatgttct tcagaccttc tgtccaaccc
     5701 gggataacac cgtccagacg gaaagaaagc ggttcaccac gggtgtaaga gttgtcgaac
     5761 tctttaccgt cgatcagcgt acctttgtag ttcactacaa cagtatcgct gtctttcggt
     5821 gcttcgcctt taccggcttc tactacctga taaaccagac cagttgaaga ggttttcaca
     5881 cctttctctt tggcaaattt ctcgcggtac tctttacctt ttgcttcgtt atcagccgcg
     5941 tctttttcca tcttcgcctg agcagaagac ttcacgcgag cttcgaatgc ttgcagagtc
     6001 tgttcgatct cttggtcgga gagtttgctc ttatcagcaa atgcatcctg aacaccagcg
     6061 atcagctgat ctttatccag tttgatgccc agtttttctt gttctttaag agagttttcc
     6121 atgtaacgac ccagcgaagc acccagtgca taagctgatt tctgatcgtc atttttgaac
     6181 gctgctttgc tgtcagcagt tgtagcaggt tttgcagctt cagcagcaaa agtgattggt
     6241 gcatgcaggg caacggccat tgtggtcgcc agcagcgtta ctttaaacag tgatttcatc
     6301 catatctcca ggatcggggc atctcacccc agggttaact attatcagaa gggtactata
     6361 aagcgttgtc gaacaaatct acatacagac acgccctatt atcatctatt ttcagactct
     6421 ttttgtttaa attagtttcg atgaccgcga aatgagtgct gtctcgggca gcaaagttaa
     6481 gtagaatccg cggcaaccat tcgacaaaag aggtgaatca tgcaggattt atcattggaa
     6541 gcacgcctgg cagagctgga gagccgactg gcttttcagg aaagcaccat tgaagaactg
     6601 aacgtcacgg tgaccgctca tgaaatggag atggcgaaac tgcgcgatca tctgcgtctg
     6661 ctgaccgaga agttaaaagc cagccagccg tcgaacatcg cgtcgcaggc tgaagaaacg
     6721 ccaccgccac attattgagg cgtaaaaaaa gcggggattc cccgcttttt tgtcaccttt
     6781 tcggtattag tggcaaccac aaccgccgtt gcctttaccg ccacagcagc cttcgccacc
     6841 gtgttcatga ccgtgatcgt ggccatgacc gccgcagcaa ccgtcgtggt cgtgatcgtg
     6901 gtgatgatcg tgcgcgccgt gaacgtgacc atgagccagt tcttcttcgg tcgcttcacg
     6961 aatcgccaca acctcaacgt tgaatttcag gttctgaccg gccagcatgt ggttaccatc
     7021 aaccactacg tgatcgtctt caaccgcagt gatttcaacc ggtaccggcc cctggtcggt
     7081 ttcagccagg aaacgcatac ctacctgcag ttcatcaacg cccataaata cgtctttagg
     7141 aacacgttgc accaggtttt cgtcgtactg accgtaagcg tcgttcgcgc caacagcgac
     7201 atcaaatttg tcgccaactt catgaccttc cagcgccgtt tccaggccag agatcaggga
     7261 accgtgacca tgcaggtagt ccagcggcgc actcaccgga gactcatcaa ccaacacacc
     7321 gtcttctgta cgtacctgat aggccaggct gaccaccagg tcttttgcta ctttcatgat
     7381 atctcctgag catgggaaga atagtggcgc agattgtagc ggaattctgc agccgtgtac
     7441 tcactagctt aaaaaaactc ggcgcatatc gctagtccgg atgaaaaatc ccgatcactt
     7501 gctcatcttt gcgaacgtga tcgcgggctt ctttgtctgc ttctcgcatc tgatgtccgc
     7561 acttaacgca ttcaacaata tcaatattat tttcgcgcca catcgccatt gaatcctgtg
     7621 cctgacaggc cgggcatttt gcgcccgcaa taaaacgttt tcggattgcc atctttaccc
     7681 tctactcaaa ttcatcccag ccgtccagct ggcgtcgttc ttgttgcatt tcacgctgga
     7741 aaatctcttc cagttcgcgt cgggcttccc tggcgcgaga aatttgtaca gtatcggcat
     7801 gcattgggat gagctctcgc agcatccgca tatccaggcg gcgaaaatgc agttgcgccc
     7861 gctgcgcctg atgcggatgc atcccaagcg tgaccaaagt cttgcgcccc agctctaacg
     7921 cactggagaa tgtttcacgg gaaaactgcg tcacccctgc ctgtaataac tcatgcgctt
     7981 ccacacgtcc gcgcgctcgc gcaagaatat gcaaatgcgg aaagtgctgc tggcatattt
     8041 ccaccagctt catggtgtct tccggctcgt tacaggtaat gacgatagac tcagcggcct
     8101 ctgcacccgc agaacgtaat agatcgacct gcgtggcgtc gccgtaataa actttgtagc
     8161 catatttacg catcaggtta acggcgctga tatcccgctc cagcacggta atgcgcattt
     8221 tatttgccat cagcaaacga ccaatcacct gaccaaaacg cccgaagccc acgacaatga
     8281 cctggggttt atcatcgttg acccacggtt tttcgtcttc ttcttccggt ccgttaaact
     8341 ggcgggataa ccatttatcc accagcttca tcagcaacgg cgtggtcatc atggaaagcg
     8401 tcaccgtcac cgtcaccagc aacagcgcca tctggtcgcc ctggaataaa cgttgtgaag
     8461 aagcggtaga aaagaggaca aaggcaaact caccgccctg actcaacacg ccagcaaact
     8521 gcatccgctc tgagctacgc acgccataca atcgcgccag cagatacagc acgagaattt
     8581 tcaccgccac cagcacaacc acgcttatca ctacccacaa cagatgggta taaagcaccc
     8641 cgaggttgag cgacatgccg acagagataa agaacaaacc gagcagcaag cctttgaagg
     8701 gatcgatagc cgtttccagt tcatggcgat attcactttc cgccagcagc acgcccgcaa
     8761 taaatgtacc gagcgccatc gacagcccca gcgcatccat aaacaatgcg gaacccaaca
     8821 ccagcagcag cgtcgcggcg gtgaacactt cccgcacgcc agaagctgca ataaagcgga
     8881 ataccggacg cagtaaatag cgcccaccaa tcagcatgcc gacaaacgcc agcaccttca
     8941 tgccgatctt catccagtcg aaatgttcgt ctgccgaccc cgccaacaac ggcactaacg
     9001 ccagtgctgg gatcactgcc agatcctgaa acagcagaac cgaaaacccg agctggccgg
     9061 attcgctgcg attcatccct ttctcacgca tcaattgcaa cgccattgca gttgaagaca
     9121 tcgcaaggcc aatgccaccg accaccgccg cctgccaggc gaaatccgtc agcatcaata
     9181 atcccgccag caacgccgcg cttaacagca cctgtgccgc gcctacgcca aaaatcgaac
     9241 gccgcagttg ccaaagtttg gagggattca actcaaggcc gatgataaac atcaggaata
     9301 ccacgccgag ttccgaaaag tggaggatct catcgacgtc gctaataaac cccagccccc
     9361 acgggccaat tgcaatccct gccagcaaat atcccaacac agcgccaatc cccagccgcg
     9421 atgccaacgg caccgcagcc accgccgcga agagaaacag cactcctgcg agtaaaaaat
     9481 cggaaccttc catcagcggc ctcctggaga cagcggattt gccagccagt caccgtaggc
     9541 tctggcgtgg ttcgccagct cctttgcact ttgccgtctc gcccagtaaa taatgatggg
     9601 acttaaccaa tgcatccggc acatgcccgc cgccagttca aaggggcgca gcacatcgct
     9661 catcgggtag cgattcagcg cgtcataacg gtaagcactt tccggctcgc cggtggtaat
     9721 cacgttacgc cagtactttc ccgccagttg gtttcctccc ggcccgctgg caaaaccacg
     9781 acttaatacc cggtccagcc actctttcag tagcgccggg cagctatagg tataaagagg
     9841 atgctgaaag acaatcacct cgtgctcgcg cagtaatgcc tgctcacggg ggatatcaat
     9901 aaaaaaatcg ggatagtgcg cgtaaaggtc gtgcacggta acattgctga gctgcgtggc
     9961 cggtttaagc agtacccggt ttgccaccga gtcctgagat tccggatggg catacagcag
    10021 caaaactttc gctggctgag acatcatccc cctcccggta tggtttttgt gtatagtcgc
    10081 tgttttgggc taccattgcg cccggtgcgg cagctcgccc atacattatc ataatgataa
    10141 gttaacatag tctgaacata cggcgcctta tgattgtttt ctcctcgtta caaattcgtc
    10201 gcggcgtgcg cgtcctgctg gataatgcca ccgccaccat caaccctggg cagaaagtcg
    10261 gcctggtggg taaaaacggc tgtggtaaat ctaccctgct ggcattgctg aaaaatgaaa
    10321 tcagcgccga cggcggcagc tacacctttc cgggaagctg gcaactggcg tgggtgaatc
    10381 aggaaacgcc ggcgttatcg caagcggcgc tggaatatgt cattgacggc gaccgtgaat
    10441 atcgtcaact ggaagcgcag ctgcacgacg ccaacgaacg taacgacggg cacgccattg
    10501 cgaccattca tggcaagctg gatgctattg acgcatggag tattcgctcc cgtgccgcca
    10561 gcctgctgca cggcctcggt ttcagcaatg aacaactgga gcgcccggta agtgatttct
    10621 ccggtggctg gcgtatgcgt cttaaccttg cccaggcgct gatttgccgt tcagacttgc
    10681 tgctgctcga cgaaccgact aaccacctcg atctcgatgc cgttatctgg ctggaaaaat
    10741 ggttgaagag ctatcaaggc acgctgatcc tgatctctca cgaccgcgac ttcctcgatc
    10801 cgatcgttga taaaattatt catatcgaac aacaaagcat gttcgagtac accggcaact
    10861 acagttcgtt tgaagtacag cgcgccaccc gtctggcgca acaacaagcg atgtatgaaa
    10921 gccagcagga acgcgtggca catctgcaaa gttatatcga ccgtttccgt gccaaagcca
    10981 ccaaagcgaa gcaagcccag agccgcatta agatgcttga gcgtatggag ctgattgccc
    11041 ccgcgcacgt cgacaacccg ttccgcttta gcttccgcgc gccggaaagc ctgccaaatc
    11101 cgttactgaa gatggaaaaa gtcagcgcgg gctatggcga tcgcattatt ctcgactcga
    11161 ttaaactgaa cctggtgccc ggctcgcgca ttggtctgtt aggccgcaac ggcgcgggta
    11221 aatcgacatt aatcaaactg ttagccggtg aacttgcgcc agtcagcggt gaaattggtc
    11281 tggcgaaagg gatcaagctc ggctacttcg cccagcatca acttgaatac ctgcgcgccg
    11341 acgaatcacc tattcaacat ctggcacgtt tagcgccgca ggagctggaa caaaaactgc
    11401 gtgactacct cggcggcttt ggtttccagg gcgataaagt aaccgaagaa acgcgccgct
    11461 tctccggtgg ggaaaaagcc cgcctggtgc tggcattaat tgtctggcag cgtccgaatc
    11521 tgctgctgct cgacgaaccg actaaccacc ttgacctcga catgcgtcag gcactcaccg
    11581 aagcattaat cgagtttgaa ggcgcgctgg ttgtcgtttc gcacgaccgt catttgctgc
    11641 gttccaccac tgacgatctc tacctggttc acgatcgtaa agtcgaaccg ttcgacggcg
    11701 atctggaaga ttatcaacag tggttgagcg acgtacaaaa gcaggaaaac cagaccgacg
    11761 aagcgccaaa agagaacgcg aacagcgccc aggcacgtaa agatcagaag cgtcgggaag
    11821 cggagctgcg tgcgcaaacc cagccgctgc gtaaagagat tgcccgtctg gaaaaagaga
    11881 tggagaagct gaacgcgcaa ctggcgcagg cggaagagaa actcggcgac agcgaactgt
    11941 atgaccagag ccgtaaagcg gagttgaccg cctgcctgca acagcaagcc agcgccaaat
    12001 ccggcctgga agagtgcgaa atggcgtggc tggaagccca ggagcagctt gagcagatgc
    12061 tgctggaagg ccaaagcaac tgatggcgca gataacgacg accgatgcca atgaattcag
    12121 cagcagtgct gaattcaccc ctatgcgcgg ctttagcaat tgtcatctac aaactatgct
    12181 gccgcgtttg tttcgtcgtc aggtgaaatt caccccgtac tggcagcggc tggagttgcc
    12241 cgacggcgat tttgtcgatc tcgcgtggag tgaagcccct gcacaggctc ggcataaacc
    12301 gcgtttagtg atatttcacg ggctggaagg cagtctcaat agcccttacg cccacggtct
    12361 ggttgaggcg gcgcaaaagc gcggctggct gggcgtggtg atgcattttc gcggatgcag
    12421 cggtgaacca aaccgtatgc accgcattta ccattcgggc gaaaccgaag acgccagttg
    12481 gtttttacgc tggctgcaac gcgaatttgg tcatgcgcca acggctgccg tcggctattc
    12541 gctcggcggt aatatgctgg cctgtttgct ggcaaaggaa ggcaatgatc tcccggttga
    12601 tgcggcggtg attgtctctg cgccgtttat gctggaagcc tgtagctatc atatggaaaa
    12661 gggcttttcc cgcgtttatc agcgttactt gctgaacctg ttaaaagcca atgccgcgcg
    12721 caagctggca gcctaccccg gaacgctgcc gattaatctc gcgcagttaa aatcggtacg
    12781 tcgcatccgt gaatttgacg atctaatcac cgccagaatt cacggctacg ccgacgctat
    12841 cgactattat cgtcagtgta gcgccatgcc gatgctgaac cggatcgcca aaccgacgct
    12901 gattattcac gccaaagacg atccgtttat ggatcatcag gtgatcccga aaccggaaag
    12961 tctcccctcg caggtggagt atcaactgac tgaacatggc ggtcatgttg gctttattgg
    13021 cggtacatta cttcatccgc aaatgtggct ggagtcacgc attcctgact ggttaacaac
    13081 gtatctggag gcgaaatcat gttgattccg tggcaagacc tctcccccga aacgctggaa
    13141 aatttaattg aaagctttgt gttacgtgaa ggcaccgatt atggtgaaca tgagcgtaca
    13201 cttgaacaga aagtcgccga cgtcaaacgc cagctacagt gcggagaagc ggtgctggta
    13261 tggtcggagc tgcacgaaac ggtcaatatt atgccgcgca gtcagtttcg cgaataacct
    13321 gcaaccgtcg gcggacgaga taataatgat agctaagtca tggagttact atgtctgcca
    13381 aacatccggt cattgcggta acaggatcca gcggcgcggg gaccaccacc accagcctcg
    13441 cgtttcgtaa aatattcgcg cagttaaatc tgcatgcagc tgaggtggaa ggcgacagtt
    13501 ttcaccgtta cacccgcccg gaaatggaca tggcgatccg caaagcgcgc gacgccgggc
    13561 ggcatatcag ctacttcggc cccgaagcga acgacttcgg cctgctggaa caaaccttca
    13621 ttgaatacgg tcagagcggc aaagggaaat ctcgcaaata tctgcatacc tacgacgaag
    13681 ccgtaccgtg gaatcaggta ccgggaacat tcaccccctg gcaaccttta ccagaaccca
    13741 ctgatgtact gttttatgaa ggtttacacg gcggcgtagt cacgccacag cataacgttg
    13801 cgcagcatgt ggacttactg gtcggcgtag tgcctatcgt taaccttgag tggattcaaa
    13861 aactgatccg cgacaccagc gagcgcgggc actcacgaga agcagtgatg gactcagtag
    13921 tgcgttcaat ggaagactat atcaactaca tcacaccgca gttttcccgc acccatctta
    13981 acttccagcg cgttcccacc gtcgacactt caaacccgtt cgcggcaaaa ggtatcccgt
    14041 cgctggatga aagctttgtg gtgatccatt ttcgtaatct ggaagggatc gatttcccct
    14101 ggctgctggc gatgttgcaa ggctcattca tttcccacat caatacgtta gtggtaccgg
    14161 gcggcaaaat gggtctggca atggaattaa ttatgctgcc gctggtgcaa cgattgatgg
    14221 aaggaaagaa aatcgagtaa ctctgctatt acgccggata aaatactatc cggcttcaca
    14281 acgggatagt taaatcacgc ggcaaccact tcatacgagt gagtaatatt caccgctttt
    14341 tccagcatca acgccactga acaatatttc tcggcagaga gatcaaccgc acgcgcaacc
    14401 gctgcgtctt tcaggtcgcg accggtgacg ataaaatgca gattaatgtg cgtaaacagg
    14461 cgtggtgcct cttcgcggcg ttcagaggtc aattttactt cacaatcgac cacatcctga
    14521 cgcccttttt gcaggatcga aaccacatcg atggcact
//
LOCUS       DAJVUP010000105        14429 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.105, whole genome shotgun sequence.
ACCESSION   DAJVUP010000105 DAJVUP010000000
VERSION     DAJVUP010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14429
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.105"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..787)
                     /gene="fimH"
                     /locus_tag="OQQ75_002839"
     CDS             complement(<1..787)
                     /gene="fimH"
                     /locus_tag="OQQ75_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria D-mannose specific adhesin FimH"
                     /protein_id="HCS1977098.1"
                     /translation="MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVN
                     LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSS
                     YPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNS
                     DDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYL
                     SGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLG"
     gene            complement(807..1310)
                     /gene="fimG"
                     /locus_tag="OQQ75_002840"
     CDS             complement(807..1310)
                     /gene="fimG"
                     /locus_tag="OQQ75_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimG"
                     /protein_id="HCS1977099.1"
                     /translation="MKWRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTT
                     NATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQG
                     TAQNIQLELQDDSGNTLNTGETKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVI
                     SITYTYS"
     gene            complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="OQQ75_002841"
     CDS             complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="OQQ75_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709916.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimF"
                     /protein_id="HCS1977100.1"
                     /translation="MRNKPFYLLCAFLWLAVSRVLAADSTITIRDYVRDNGCSVAAES
                     TNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLA
                     LENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
                     TAGHINATATFTLEYQ"
     gene            complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="OQQ75_002842"
                     /pseudo
     CDS             complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="OQQ75_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418737.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher FimD"
     gene            complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="OQQ75_002843"
     CDS             complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="OQQ75_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418736.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HCS1977101.1"
                     /translation="MSNKNANVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATR
                     VIYPAGQKQVQLAVTNNDENSTYLIQSWMENADGVKDGRFIVTPPLFAMKGKKENTLR
                     ILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQFAIISRIKLYYRPAKLALPP
                     DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAG
                     SNITYRTINDYGALTPKMTGVME"
     gene            complement(5328..5867)
                     /locus_tag="OQQ75_002844"
     CDS             complement(5328..5867)
                     /locus_tag="OQQ75_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418735.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1977102.1"
                     /translation="MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCR
                     IEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGK
                     NPDVLSVGEGPGIATNIGVALFDDEGNLVPINRPPVNWKRLYSGSTSLHFIAKYRATG
                     RWVTGGIANAQAWFSLTYQ"
     gene            complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="OQQ75_002845"
     CDS             complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="OQQ75_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial major subunit FimA"
                     /protein_id="HCS1977103.1"
                     /translation="MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAAC
                     AVDAGSVDQIVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVASKAAVAFLGTAID
                     AGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARY
                     YATGVATPGAANADATFKVQYQ"
     gene            complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="OQQ75_002846"
     CDS             complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="OQQ75_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313299.1"
                     /note="upgraded from regulatory protein to switch DNA
                     invertase; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria switch DNA invertase FimE"
                     /protein_id="HCS1977104.1"
                     /translation="MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISE
                     LLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTLERANWKGADRTDAI
                     FISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYL
                     GHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV"
     gene            complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="OQQ75_002847"
     CDS             complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="OQQ75_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria switch DNA invertase FimB"
                     /protein_id="HCS1977105.1"
                     /translation="MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIH
                     GFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTPPLLNKEVQALKNWLSIRTSYPHA
                     ESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRL
                     IQDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL"
     gene            10089..10805
                     /gene="nanC"
                     /locus_tag="OQQ75_002848"
     CDS             10089..10805
                     /gene="nanC"
                     /locus_tag="OQQ75_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313297.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminic acid outer membrane channel
                     NanC"
                     /protein_id="HCS1977106.1"
                     /translation="MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLK
                     VSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHF
                     SSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYVTYH
                     INSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGV
                     YNGRDNLSENSYRIGVSFKL"
     gene            10825..11931
                     /gene="nanM"
                     /locus_tag="OQQ75_002849"
     CDS             10825..11931
                     /gene="nanM"
                     /locus_tag="OQQ75_002849"
                     /EC_number="5.1.3.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate epimerase"
                     /protein_id="HCS1977107.1"
                     /translation="MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG
                     LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQ
                     VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNE
                     AGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK
                     GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF
                     AGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW
                     NNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN"
     gene            11996..12976
                     /locus_tag="OQQ75_002850"
     CDS             11996..12976
                     /locus_tag="OQQ75_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709926.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HCS1977108.1"
                     /translation="MDAIISPDYYYVLTIAGQSNAMAYGEGLPLPAREDAPHPRIKQL
                     ARFAHTHPGGPSCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARK
                     LLSFIPDNAGVLIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRT
                     RAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNIT
                     DAPWFCGDTTWYWKENFPHAYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPD
                     DLIMGYYGSAYRSPENWTTALRSSHFSAAARRGIISDRFVEAILQFWRGK"
     gene            complement(12984..13106)
                     /locus_tag="OQQ75_002851"
     CDS             complement(12984..13106)
                     /locus_tag="OQQ75_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012139841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1977109.1"
                     /translation="MISFVFLLLVCPNCHAMLHRRKPPFTPEELKALMDANKSN"
     gene            13188..14060
                     /locus_tag="OQQ75_002852"
     CDS             13188..14060
                     /locus_tag="OQQ75_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1977110.1"
                     /translation="MASSKSLQQAIANIKIWHKGEQRAPHKPLLLLYVLAGYLNGHPR
                     LFDYGSEIYEPLHSLLERFGPQRSQYRPDMPFWRLQGDGFWQLHNAELCSTAGSSRQP
                     PVKELNEYHVAGGFDEQHYALVTGNKKLINTLAQQILEAHFTESIQEEIADELGFDLQ
                     QIRKQRDPLFRKNVLRAYNYQCAICGFNMRHDDTTVALEAAHIKWKQHGGPCEIPNGL
                     ALCAIHHKAFDKGSIGLDENMRVLVSDAVNGGGSVERLFWDFDGKIIALPQVRKNYPY
                     EGFVEWHRNEVFRG"
     gene            14105..14284
                     /locus_tag="OQQ75_002853"
     CDS             14105..14284
                     /locus_tag="OQQ75_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001153035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977111.1"
                     /translation="MQDLAASLQLAFDSGAKRVLLPISWAMDIPTVPAELFTKFQVSF
                     YSEPVDAVYKALDVN"
BASE COUNT         4043 a         3328 c         3152 g         3906 t
ORIGIN      
        1 ctcctaacga taccgtgtta ttcgctggaa taatcgtacc gttgcgcgtc aactgtacgc
       61 cgacgccctg cgctggtgaa aacgacgcgg tattggtgaa aatcgagttg cccgcatctg
      121 cggttgtgcc ggagaggtaa taccccaggt tttggctttt cgcacaataa acggtaagag
      181 gaattggcac tgaaccaggg tagtccggca gagtaacggt gacatcacga gcagaaacat
      241 cgcagccgcc agtaggcacc accacatcat tattggcgta aatattccac acaaactgga
      301 aatcatcgct gttatagttg ttggtctgtc gcaaaataag cacggcaatt aatgagccag
      361 ctttaatcgc caccccgccc gcactgctca caggcgtcaa ataaagcgcc accggccacg
      421 gcttatccgt tctcgaatta taaacaaccc gcggcgtttc gctggtggtc ggaaatggat
      481 agctactgcc actatatttt acggtcccgg aaaaattaga taacacgccg ccataagccg
      541 agcctcgttg cagtgtgaca tagtctgtaa tggtttccgg ataatcgtta tggcaaaaga
      601 tttgcgtcga aagatctacg accaggtttt gccccacatt cacgacaggc gcaaggttta
      661 cataaacatt agcgctgcca ccgccaatag ggatagcagt accattggcg gttttacagg
      721 cgaatgacca ggcatttacc gaccagccca tcagcagtac agcaaacagg gtaataactc
      781 gtttcattac aattatctct tcgggttcag ctgtaggtat aggtgatgct aatcactgcc
      841 tgaatggttc cctgagtggc tccgccattt accgtcaatg ctctgacctg taacgggaag
      901 tgcgctgatt gtgaggaatc atccacctga actgttttgg tttcgccagt attcaatgtg
      961 ttgccactgt catcctgtag ctctaactgg atgttttgcg cggtcccctg gtttttataa
     1021 tatccggtac tgtcggctgc cccgctgaag ctggcagtga ccctcgacgt tcccaccgga
     1081 caattagtca actcaagcgc aacatcatgc caggccgatg ccgccccggc agacatcaga
     1141 ctgaaagaat aaagatcgcc gagatcaacc gtggcattgg tggtggaaac tgtgcacggt
     1201 ttggcgacga ccttaccgtt caccgtgatg gtgacatcgg ctgcctgtat tgtcgcactt
     1261 gcgagcgcca atattgccgc caataaatac ccacgtttgc gccatttcat gagcatctcc
     1321 agttactgat attcaagagt gaaggtagcc gtggcattga tatgccccgc agtgacaggc
     1381 acctgtgtcg ccattagccg ggcgtaaaaa ttcaacgtat ttggtttacc cggcgtcagg
     1441 gtcgtccacg aaatcgcgga cgatggagca ttaaggggta tctgattttg ctgctcattc
     1501 agaagctgta ttcccagtcc cgaagccgct gacaccgtat tttcaagtgc aagcaggttg
     1561 gcattgtggc tatctgcaac gccggtaaac ccaaccttta cggcagaaac ggcgttacca
     1621 cagggtgaca gcaaaatacg aaatggaacg acaggagtcg ttgcgccaat gttgttaaat
     1681 tgcttcgccg cgttttccat cagatcaaca gtaaaattgg ttgattcagc ggccacacta
     1741 cagccgttat ctctgacata gtcgcggata gtaatcgtgc tatccgcagc caaaacgcga
     1801 cttaccgcca gccacaaaaa agcgcacaga agataaaaag gtttgtttct catcacgccc
     1861 ccttaacgac attcagctga tagctgggtt aataactgct gctgactctc tggtggcagt
     1921 tgataattgg cgatacagtg agcattttcc tcttctcccc atttcacctg aacttttccc
     1981 gctaaaggca ttccgctgag gtaaacctga ccattatccg caacaatgcc gctactctgg
     2041 ctactctctg atgtcaccat cgccccaaac ggcagcggct tattattgtg ggttagcgtc
     2101 atgagcagtt ttatcccaac gcgcgcttta aactctgctc gcacgatcgc cccacgagtg
     2161 ggaacaacgt tagcgaccgc gttatctaaa tcgacgttat cagccagggt attggtatcc
     2221 agcgccactc tgttttcccg atattcggtg gcataaggca gcacggcata accgcgccag
     2281 tcggtacgca cccccgtctg gttttcgact tttgcatctt ttgcgccagg cgctttaaca
     2341 agtaccaccg tatcgtttaa cggctgcccc agcgttacgc cattggcatg agccagtacc
     2401 ccaccgctga ctccgtaata gagctgctta atatcatcgc tatggctgta accgatattg
     2461 gcattgccgt aaccaccgcg ataattcagc gtggcgtagc ctgtacttcc gctattacca
     2521 tcgcctcccc cggcatagcc ggtttgcacg ctatagctga ggttgttgtc ttccagcaac
     2581 gtaccgtata caccagccag attggtcatc cgaccgttga gatcgtgtga cacgctgtag
     2641 ctggcactgg catgtcgcca ctgagattta ctgtcagaac gcagccagtg gctgaaagga
     2701 atattgacgt taagcgctaa catctgatcc cgcccttttt gccaggcgtt tttcgtcagg
     2761 ctatagctga gcgtccagtt gatatcttcg aacgcagtat ttaatccagc ctagaattgc
     2821 tcatcgacat tactcgttcc ccaataagtt tgatggctac cactcaaata cagtgttgat
     2881 gtgcgcccga gttgctgagt aacggtgagc tgtaatttcc cgcgtttgtt ataagcgagg
     2941 ttgtaatagt cggtgaattt cggcttaacc tgaataactc catcctgtgt ttcgatgttg
     3001 tagccattca ttcgactgta tgttgtatca gcgaaattaa aatatccgct ggtcgaataa
     3061 cggtaaccca ctaactgaat attcgtgcct gactcattga gcgatttgtt atagagaaaa
     3121 cgcaccgatt gtccgtcatg ctgactgtca tcgggaagtg tggaattagc ctgcgtcata
     3181 tccacagaca gagcgcccag tgcccccatg tttttcccga taccgaaatt aaaagcacga
     3241 taacgatccg ccagttgcgt tccaccatat attgtccagc cagccggaag gccgtggagt
     3301 aatgtacttt ggaaaaagcg gggtttttcc tgctgcgtat ttccactacg gtattctcct
     3361 gccgtaatgg aataacgagt atgcccttca cgttgcaaaa gcgggactga cgaatagggt
     3421 acggtaaaaa tctgcgtgct gccgtcagcc tctttgatcg ttacctgcaa gtcaccacta
     3481 ttacctgcgg catagatatc gttgatggta aaaggccccg gtggcaccgt actattataa
     3541 atgtcatacc cattttgttt aatagtgacc tgtgcagtac cacgagcaat accgtggatc
     3601 accggggcaa atcctctttg gctatcgggt aacatattgt catctgaggc caattgtgcg
     3661 ccgcgaaagt taataccatc gaaaatatcg ccctgggtat aaccatcacc cagcgtcagc
     3721 cgggaacgta acggtattat gtctcgctca agccaggtat tgatatgctg ccatttattt
     3781 ttgctacctg atgatctgtc gctactgtta taactccagc tggtattgtc gcgtaaacac
     3841 cacgcaccaa tatttaaccc actctgtagg tttaaatatg cataatggct gttaccccca
     3901 atctgattct gtacactatt tccgctgaaa ttataattga gcaatccggc attaataccg
     3961 ggatcccata actcaggagg aatataacca cgcgcgcgat tactcataaa tgcctgaggg
     4021 atcgtcaggt tcagtcgctg ctgaccaaca tccagatgcg cagtagcgtc atggatcatt
     4081 gaggttaatg gcacgcaggc atcatctgcc agcagattca taccggagac agaagccgca
     4141 ttcagcccca tactggcaag ttgcgcgcgt gtcaggcagg gaacaatccc ttgttcactg
     4201 tcgcccgtat taaatgtgac atcacgcgtt gccatataac cattattcaa atagatatcg
     4261 acgcgatacg tccctggcgg taattcttgc ccattttcaa aacgcgataa atcggccaca
     4321 gcctggggat catccgctaa aaagcgcgga ttaaaataga gttcggcaga tgacaaaggt
     4381 gcctgtgcgg caaaagcaca ggcgacaacg agccggacaa aaaaaccagc caaacgatgc
     4441 ttacgaatat gcaagcattg tgtgtttcgc tggtaaagtc ttaaattcag atatgacatt
     4501 attcctccgg tttaaaatta cccggcagtc aattcttttt attcaggcga gaaattcccc
     4561 ctgcgttatt ccattacgcc cgtcattttg ggggtaagtg cgccataatc atttattgtt
     4621 cggtaagtaa tattgcttcc tgcatcagaa ggcaatttaa ccgtgctttc gcccattgga
     4681 ggcaccaatg cattttcaag aacccgggtt ccggcattca actctgttac cgtcagataa
     4741 tagggtgtcg ggttaatcag cgtcagagaa ttcgcgctac gacgaaatct taatttttct
     4801 gcggcctgat cgggtggcaa cgctaattta gccgggcgat agtacagttt aatgcggctg
     4861 ataattgcga actgtagcgt attctcagtc aattttgatt tatccattga cggaatcgct
     4921 ttaacattca tccagaataa actttcccgg tcctgtggca attggttatt tgttgcatca
     4981 agaatacgca aggtattctc tttttttccc ttcatcgcaa acagaggagg cgtcacgata
     5041 aaacgaccat cctttacacc atcggcattt tccatccatg attgaattaa ataggtacta
     5101 ttttcatcat tatttgtcac ggcaagttgc acttgttttt gccctgccgg ataaattacg
     5161 cgagtcgcac ctaaggccac tcccgcttca gcgcgtccgg caaccatcat tgccatgaac
     5221 atcaggatac ctgccagcaa gcagaatgtt atttcctgcg atttccttac attggcgttt
     5281 ttattactca ctgtcctgtt cctgttatca cattatctgc tgaacaatta ctgataggtt
     5341 aaagagaacc aggcctgggc attggcgatg ccgccagtaa cccaacgccc ggtagcacga
     5401 tatttggcga tgaaatgtag cgaagtagag cctgagtaaa gccgtttcca gtttactgga
     5461 ggacgattaa tcggtacgag gtttccttca tcatcaaaca acgctacgcc aatattggtg
     5521 gctatccctg gcccctctcc cacggaaagc acatccggat ttttaccatc cgcgacaccg
     5581 tgaaacgcca cacccacacg ttcactcacc accgtgctac attcccgtaa atgaataaca
     5641 aaaggcaccg gtgcgctatc ttcccctacc gcatgaaacc ggttactgct gatttgcccc
     5701 atattgaccg tcatttgttt atcaccggct tcaatccggc aagtttccgc aataatgacg
     5761 ccctgaaatt gcatatttcc gccgggcagc gtagtattcc atttatttcc ggccagagca
     5821 aacattggca gcaacgacgc taatagaaat aatctcttcc ttttcatcgt tatttttatc
     5881 gcacaagggt gggcatccct gcccgtaatg acgtccctga acctgggtag gttattgata
     5941 ctgaaccttg aaggtcgcat ccgcattagc tgcgccaggg gttgcgacac cggttgcata
     6001 ataacgcgcc tggaacggaa tggtgttagt accgttattc agggttgttt gctcactgaa
     6061 tgtcgcacca tccagcgtca gcgcagcacc cgttctgtcc aggatctgta caccaacgtt
     6121 tgttgcgcta cccgcagctg aactctgcag agccagaacg ttggtatgac ccgcatcaat
     6181 cgccgtacct aaaaaggcaa ctgcggcttt agatgcaaca ttggtatcgc aatcattcag
     6241 ctgaatgtta aaaccgacag cagaactggt tgctccttcc tgtgccagcg atgcggtacg
     6301 aacctgtcct aactgaacga tttgatcaac agagcctgca tcaactgcgc aagcggcgtt
     6361 aacaacttcc cctttaaagt gaacggtccc accattaacc gtcgtggcag cggccagagc
     6421 cgctgtagaa ctgagggaca gagccgacag aacaacgatt gccagagttt taattttcat
     6481 gctgctttcc tttaaaaaaa ctatttctaa atcgacatgg gcagtcgttc tgtacacttt
     6541 gttttgtcaa cgagtttgac tgccaacact gcacagtttt cccccaaaag atgaaacatt
     6601 tggggccatt ttgactcata gaggaaagca tcgcgcacaa actttttcag tttatttgtt
     6661 ggcttaatat tctattgtta tctttattta tagattttta tattgcatga ggtggttttt
     6721 ggagagaaga atgaggaaga tgcgtcgagc cacagaaacg ttagctttac atatagcgga
     6781 ggtgatgtga aattaattta caagagaaat aatttacata tcaaacagtt agatgatttt
     6841 tgtcgttttt taaaattttt atgcttgaga aaaaatacgt aacttattta tgatatggac
     6901 aatttggccc caattgtctt gtatttattt tttaacttta ttatcaataa gttaattcaa
     6961 acctcttctc tttttaattt ttcgtttatg agattatttc tttcccataa tccggcaaaa
     7021 cgagcagcat tactggcggt ataacgtaca gtatggcgaa tatttcgatg cccgagataa
     7081 tcctgaatta aacgagtatc tgcaccacgc tccgccagtt cataaccgca agcatgcctt
     7141 aacatatgag gatgagtctg cgttacggtt ccagcttcaa taccggcatc acgaataatg
     7201 cgataggcct gctggcgaga aagccgactc ccgcggcgag aaataaatat ggcgtcggtc
     7261 cggtcagcgc ctttccagtt agcacgttcc agggtccagc gttccacagc ttcacgctca
     7321 tcaaaacgta acgggtgaac ggtagaaaat ccgttcttca gtcggcgaat atttattcga
     7381 ccttcattaa ggtcaagatc ctgataatgc agatcaagca gttcactaat acgcatccca
     7441 tgccgatatg ccaacagaat aagacaataa tctctggctc ccgttgcccc gtaacaaacc
     7501 gcctgcatca tggcctgaac ttctttaccg gtaagataac gacgtttact cacaatagta
     7561 gtactcctaa ctgagatata tttgaatgaa tacctatagg aaacctcaat cggtcaaaat
     7621 tagcccaata gataaaaaga taaccacaca cgaagtgatg tggctatcag tcaattacat
     7681 taaatatcat acaaaaataa aatatcactg atgtgacaac atctattttc attgatttga
     7741 ttcaatataa caatagattg tagtagatta gcttccagtt gcttaaaaaa taaagaaaaa
     7801 agtgcgaaaa caggagaatt taagtgatgt gtaaatttat gaatgatttt gtttatttat
     7861 tttgaagaac ataaaccatt gtattttgta tggatatggt taacttaatg cttattatga
     7921 taattaagaa ttatacttac aataacatca attaataaat ggttaatcat ttttgatata
     7981 tcgtaagaat aatgtagttt ttaacaccat ccctggtatc tcaactatct ctataaaaca
     8041 gcgtgacgct gtcgtcctct ggctctatcc cagatgccgt aaaaacgccc tgcattgctg
     8101 gcggtatacc agacagtatg acgaatattg cgatgcccaa gataatcctg gataagtcgc
     8161 gtatctattc ccatattcgc caaagcaaaa ccacacgaat ggcgtaacat gtgcggatga
     8221 atctccagtg acaacccggc attaccaccg gaagtcgaga taatatggta aaactgttgc
     8281 cgagaaagcg gattcccctt acgcgataaa aatacccact cgctctcagc atgcgggtac
     8341 gaagtacgga tactcaacca gttttttaaa gcctgaactt ctttattcaa tagcgggggc
     8401 gttgttgaaa agcctttttt taatcgatgg atatatatac actttgcctt aagatcaata
     8461 tccgaaatcc tcaatcgaca aatttcactc gcccggaaac catgaataaa acaaagcaaa
     8521 gtcagacaat aattacgtgc tgcatgaggc ccggtatttg ctgctttaag gagtgattcg
     8581 atttcactat gggtcaggaa gttccttttt ttgttatcag ccttattctt catcgttttt
     8641 cccttataat tacagacgcg cactagctgt gctgggttag caataatcca acatttttat
     8701 cctgattatg tttataaaag cgaacgtttg cttaataact aacgtaagtg gaccagttct
     8761 tctgagtgaa cttaaatggg gtagcaacag ttaattataa taacgttgcc atacaaacgc
     8821 tatgctcttg catgctatgt acctttatat atttatcaat cggatacgaa tctaataata
     8881 cccctcatca ttaatgcaac taatcttatc tatatatcat gtgatatgtt ctgtaacaag
     8941 taaaatcagc ataaaaaatt cagcaaaatt taatattcgt tcaactagcc gtctcacata
     9001 tgacattatt agtcaactcc atttgccaca aaatggctat ttcatggaac gcagtaattt
     9061 cttagtggct attatcatgc taattcttag gtccctagcg attattcctg gctgattcgt
     9121 cagcttacgc catgagattg ttacattcct ttttatcctg gagatatggg ggaacgcagg
     9181 agatgatttt ttcatctaca ttcgttggta aatatagctt tggtcactac gacttaaacc
     9241 ttcctcaatc acagccattc gccgggcgat acggcaaaca aactaagtga aacatcatcc
     9301 tgaaaacacc aacatcaaca agcctctcca gatcgacttc agaagtgacc agttacaagc
     9361 cacaaaccag gaaacatatt tcatgatgag aattatgctc agcctgatgg cgggtaaaca
     9421 ctgattttca ccaagctcac tgagttagct tgcaaagctt cccttgttta gactccaaat
     9481 aaattattta taaaacaaac atttaaacaa agatctttag tttttgaaga ccaccgcaag
     9541 tgttcgtctg gcttcacatg gcatcttcct cttagaaaaa gatcgacata ttttgtgaca
     9601 cgaattgcaa atctggtttt gttgtatgga ttgcgtgatt tttgatctgg tataacaggt
     9661 ataaaggtgc accaagatag tcaatgagac agggcatctc gcaatctatg gcaaacatca
     9721 cttcagttct ttctcatcgg gtgatgaaaa cgcacttcag tctgaaagga atatgaaaat
     9781 gagatcaaca gacactctat tttatgactc tgggtaaaat ggattgagta agtgatatag
     9841 cttacgaaaa ttcaaatcaa ttaaacatca gaagagattt tatactcagg tatttaatct
     9901 ggatctctgt ttatttaaat aatgtgaaaa gagatttttc acaggagacc ttatacaaaa
     9961 aaatataaaa tacagctacc ggttgccaaa gacactataa gcctggcaaa aaatattaca
    10021 caacataaat gctaattgtt tatgcgggct ttgtattgct ttctgtatcc tacaaatgag
    10081 tgaaatttat gaaaaaggct aaaatacttt ctggcgtatt attactgtgc ttttcgtccc
    10141 cattaatttc tcaggctgcg acactggacg tacgtggtgg atatcgtagt ggaagccacg
    10201 cctatgagac tcgactcaaa gtcagtgagg gatggcaaaa tggatggtgg gcaagcatgg
    10261 aaagtaatac ctggaatacc attcatgata ataaaaagga aaatgccgca ctcaatgatg
    10321 ttcaggttga agttaattac gcgattaaac ttgatgatca atggacggtg cgcccgggaa
    10381 tgttaacgca ttttagcagc aacggcacac gctacggacc ctacgtaaaa ctgtcctggg
    10441 acgcgacaaa agatcttaat tttggcattc gctatcgtta cgactggaaa gcttaccgac
    10501 aacaagactt atccagtgat atgtctcgtg ataacgttca tcgttgggat ggatatgtca
    10561 cttaccatat taatagtgat ttcaccttcg catggcaaac gacgctatac agcaaacaga
    10621 acgattatcg ctatgcaaac cataagaaat gggcgacgga aaatgcattt gttctacaat
    10681 accatatgac gcccgatatt acgccataca tagaatatga ctaccttgac cgtcagggtg
    10741 tttacaacgg cagagataat ttatcggaaa acagttatcg cattggtgtg tcatttaaac
    10801 tgtagtagac aggagacagt cacaatgaat aaaacaataa cggcgcttgc tatcatgatg
    10861 gcttcatttg ccgcaaacgc gtctgtatta ccggaaactc ctgtgccatt taaaagtggt
    10921 accggagcaa ttgataacga cactgtctac attggtttag gtagcgcagg tacggcatgg
    10981 tacaagctgg atacacaggc caaagataaa aaatggacag cgttagctgc attccctggt
    11041 ggaccaagag atcaagcaac ctctgcattt attgatggca atctgtatgt gtttggcggc
    11101 attggcaaaa acagagaggg cttgactcag gtatttaatg acgtacacaa atacaacccc
    11161 aaaaccaata gctgggttaa attgatgtcg cacgcaccga tgggcatggc gggtcatgtg
    11221 acttttgtac acaacggcaa ggcttatgtt actggcggtg ttaaccagaa tatcttcaat
    11281 ggctattttg aagatctcaa cgaggctgga aaagattcaa ccgctgtaga taaaatcaat
    11341 gcctactatt ttgacaaaaa agcagaagat tatttcttca ataagtttct gttgtctttt
    11401 gatccctcaa cacagcaatg gagttacgct ggcgaatcgc cctggtacgg aacggctggt
    11461 gcggcggttg tgaataaagg tgataaaacc tggcttatta atggcgaagc caaacccgga
    11521 ttgcgaacgg atgccgtatt tgaacttgat ttcaccggta ataatttaaa atggaataag
    11581 cttgctcccg tctcatcacc agatggcgtc gctggcggtt ttgcggggat aagcaatgat
    11641 tctcttatat ttgccggagg ggccggattc aaaggttcac gagaaaatta ccagcacgga
    11701 aagaactatg cgcatgaagg cctgaaaaaa tcatatagca ctgatattca tctttggcat
    11761 aacgggaaat gggataaatc gggtgaatta tcgcaaggtc gggcctacgg agtatcattg
    11821 ccctggaata atagtctatt gattattggc ggtgaaactg caggcggcaa agcggtgacg
    11881 gattcagttt tgatctctgt gaaggataat aaagtcacag tacaaaacta acgcttcagg
    11941 gccccagtaa aggggccctg ctatcaattt atcatttcaa ttacgcgaaa attatatgga
    12001 cgcaataata tcgcccgatt attactatgt tcttaccatt gctggtcagt ctaatgctat
    12061 ggcgtatggc gaaggactgc cattaccggc cagggaagat gcgcctcatc ccagaattaa
    12121 acaattagcg agatttgcgc atacgcatcc cggaggcccg tcatgtcact ttaacgacat
    12181 tattccacta actcactgcc cacacgatgt tcaggatatg cagggttatc accatcctct
    12241 ggcaacgaat catcaaacac agtacggcac cgttggccag gcactgcata ttgcacggaa
    12301 attactgtcc tttattcctg ataacgcagg ggttctcatc gttccgtgtt gccgtggcgg
    12361 atcggctttt accgcgggca gcgaagggac atattcagaa cggcacggag ccagccatga
    12421 tgcttgtcgt tggggaacgg atactccgct ataccaggat ttagtcagca gaacgcgagc
    12481 cgcactggca aaaaatccgc agaacaaatt cctcggcgta tgctggatgc aaggcgaatt
    12541 tgacttaatg accagtgact acgcgtcaca ccctcaacac tttaatcata tggttgaagc
    12601 ctttcgtagg gatctaaaac aataccattc tcagcttaat aatattactg acgcgccgtg
    12661 gttttgcggc gataccacct ggtactggaa agaaaatttc cctcatgcgt atgaagctat
    12721 ttatggcaat tatcaaaata atgttttagc taatattatt ttcgtcgact tccagcaaca
    12781 aggtgaaaga ggactgacga acgcgcctga tgaagacccg gacgatttaa tcatgggata
    12841 ttacggttca gcgtaccgct caccggagaa ctggacgacg gcactgcgaa gcagtcattt
    12901 cagcgcggca gcccgtcggg ggattatttc tgacaggttt gtagaagcaa ttttgcagtt
    12961 ttggcgcgga aagtgagcgt tcattaattt gatttattcg catccatcaa cgcttttaac
    13021 tcctccggcg taaacggtgg tttgcgtcgg tgcaacatcg catggcaatt agggcacaca
    13081 agcagcaaaa aaacaaatga gatcaaggta atatatcttc acttgcaggc ttgaacagca
    13141 gaaaatttgc gagcatgatc gcaattattt cactgctagg gatatcaatg gcttccagta
    13201 aatcgctaca gcaggcaatt gccaatataa aaatctggca taagggtgaa cagcgcgcac
    13261 cgcataaacc attgttattg ctatacgtat tagcgggata cctgaatgga catccacgcc
    13321 ttttcgatta tggatcggaa atctacgaac ctctgcacag tttactggaa cgttttgggc
    13381 cacagcgttc acagtaccga cctgatatgc cgttctggcg attacaaggc gacggattct
    13441 ggcaattaca caatgccgag ctttgctcaa cagcagggag cagccgacaa ccgccagtga
    13501 aggaactgaa cgaataccac gttgcaggcg gtttcgatga acagcactac gccctggtaa
    13561 ccggcaataa aaaactcatc aatactctag cgcaacagat actcgaagcg cacttcaccg
    13621 agagtattca ggaagaaatt gctgacgagc tgggttttga tctccagcaa atccgtaaac
    13681 agcgcgaccc gttatttcgc aaaaatgtat tacgcgctta taactaccag tgcgcgatat
    13741 gtggctttaa tatgcgccac gacgacacca ccgtcgcgct ggaagcggcg catataaaat
    13801 ggaaacagca cggcggtcct tgtgaaattc ctaatggcct ggcgctttgc gcaattcacc
    13861 ataaagcctt tgataaagga tcgattggcc tggacgaaaa tatgcgggta ctggtatcag
    13921 atgcagtaaa cggcggaggg agcgttgaga gattattctg ggattttgac gggaaaatta
    13981 ttgcgttgcc gcaggtgcgt aaaaattacc cttatgaggg gtttgtggag tggcatcgga
    14041 atgaggtttt tagggggtga ggttgataac tatcgcagta tgttcaatat tgctgacata
    14101 atcagtgcag gatcttgccg ctagtttaca actcgccttc gatagcggcg caaaacgagt
    14161 tctgttgccg atatcctggg ctatggatat tccaacagtt ccggcagagt tgtttaccaa
    14221 gtttcaggta agtttttact cagaaccggt tgatgcggtt tataaggcgc tggatgtgaa
    14281 ttaacacatt cctcagctta tttacaaaag gattattccc atttgatata atatcagtgc
    14341 caatttactt ttttcaatgg aatatatctc ggctaaataa caataaaact tatcgctaat
    14401 ggattaaata aacaattttc taattcatt
//
LOCUS       DAJVUP010000106        14222 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.106, whole genome shotgun sequence.
ACCESSION   DAJVUP010000106 DAJVUP010000000
VERSION     DAJVUP010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14222
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.106"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            505..1329
                     /gene="gadX"
                     /locus_tag="OQQ75_002854"
     CDS             505..1329
                     /gene="gadX"
                     /locus_tag="OQQ75_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadX"
                     /protein_id="HCS1977112.1"
                     /translation="MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRV
                     DKCVENFVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQ
                     NKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWT
                     LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGY
                     HSVSYFIYVFRNYYGMTPTEYQERSAQGLPNRDSAASIVAQGNFYGTDRSAEGIRL"
     gene            1697..2425
                     /gene="gadW"
                     /locus_tag="OQQ75_002855"
     CDS             1697..2425
                     /gene="gadW"
                     /locus_tag="OQQ75_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadW"
                     /protein_id="HCS1977113.1"
                     /translation="MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFC
                     SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG
                     VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE
                     RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF
                     INTFRQYYGVTPHQFAQHSLGTFS"
     gene            complement(2788..5901)
                     /locus_tag="OQQ75_002856"
     CDS             complement(2788..5901)
                     /locus_tag="OQQ75_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS1977114.1"
                     /translation="MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTIT
                     VSATYPGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDI
                     AQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVAS
                     NIKDPLSRTAGVGSVQLFGSEYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQ
                     LGGMPQAADQQLNASIIVQTRLQTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYS
                     TVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIE
                     ISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLS
                     AVFMPMAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPN
                     ALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTSFLPEED
                     QGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGL
                     AFISLKPWSERVGEENSVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMEL
                     LDNGNLGHEKLTQARNELLSLAAQSPDQVTGVRPNGLEDTPMFKVNVNAAKAEAMGVA
                     LSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAP
                     LSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYS
                     WTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLAT
                     DLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIGAIIEAARMRLRP
                     ILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHL
                     FARFKKA"
     gene            complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="OQQ75_002857"
     CDS             complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="OQQ75_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtE"
                     /protein_id="HCS1977115.1"
                     /translation="MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPG
                     SVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELN
                     SAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV
                     EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQD
                     FLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIF
                     PNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIE
                     ASKAIGDQWVVTSGLQAVDRVIVSGLQRIRPGIKARAISSSQENASTESKQ"
     gene            7143..7421
                     /locus_tag="OQQ75_002858"
     CDS             7143..7421
                     /locus_tag="OQQ75_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977116.1"
                     /translation="MRDLQTSGIVGLSASKVGYRHSDRHGEVNDKKNVAVLPTVPASI
                     RATKGSTGGYTYQGNKVVLASPLVITGGNEISICIPRHASHQFQLLMS"
     gene            complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="OQQ75_002859"
     CDS             complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="OQQ75_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadE"
                     /protein_id="HCS1977117.1"
                     /translation="MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVI
                     IDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEIT
                     YGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITLTLNISQQTLKIQKFNIMYKLKL
                     RRMSDIVTLGITSYF"
     gene            complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="OQQ75_002860"
     CDS             complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="OQQ75_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-resistance protein HdeD"
                     /protein_id="HCS1977118.1"
                     /translation="MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFV
                     SGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPEL
                     GIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVS
                     VTLVSTLVGIELIFSAASLFSFASLFVKQQ"
     gene            9575..9907
                     /gene="hdeA"
                     /locus_tag="OQQ75_002861"
     CDS             9575..9907
                     /gene="hdeA"
                     /locus_tag="OQQ75_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeA"
                     /protein_id="HCS1977119.1"
                     /translation="MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLA
                     VDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE
                     WDKIKKDM"
     gene            10023..10349
                     /gene="hdeB"
                     /locus_tag="OQQ75_002862"
     CDS             10023..10349
                     /gene="hdeB"
                     /locus_tag="OQQ75_002862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeB"
                     /protein_id="HCS1977120.1"
                     /translation="MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFID
                     LNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA
                     SNDLPN"
     gene            10413..11060
                     /locus_tag="OQQ75_002863"
                     /pseudo
     CDS             10413..11060
                     /locus_tag="OQQ75_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417965.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
     gene            complement(11102..11632)
                     /locus_tag="OQQ75_002864"
     CDS             complement(11102..11632)
                     /locus_tag="OQQ75_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1977121.1"
                     /translation="MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDGMLHQNAFVI
                     IDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI
                     NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKITLKTFYCHKHNIMMILNL
                     KRINELVRHQHIDYLV"
     gene            complement(11788..12354)
                     /gene="slp"
                     /locus_tag="OQQ75_002865"
     CDS             complement(11788..12354)
                     /gene="slp"
                     /locus_tag="OQQ75_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein Slp"
                     /protein_id="HCS1977122.1"
                     /translation="MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQ
                     PGLYVGQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFL
                     DPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYG
                     YGAFWPEPGWGAPYYTNAVSQVTPELVK"
     gene            complement(12709..13826)
                     /locus_tag="OQQ75_002866"
                     /pseudo
     CDS             complement(12709..13826)
                     /locus_tag="OQQ75_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312403.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3947 a         3019 c         3155 g         4101 t
ORIGIN      
        1 attatgtgtc gtcgcggctt cgaaatggac tttgctgaac tgttgctgga agactacaaa
       61 gcctccctga aatatctcag cgatcacccg aaactgcagg gtattgccca gcagaacagc
      121 tttaaacaca cctgataaca taacgttgta aaaaccgaat gcccagcctt taaaaaaaca
      181 gctgggcatt cggttgctta ttaatcgcaa taatatattg gctgtctatt catcgtgttg
      241 ataagatata tgttatatga atgtttatta aatgtagcga ttgcctttaa tgtcacgaaa
      301 agggattatt tgcttgctat taatttcact gcgttcttaa acgcgttttt gtattataaa
      361 tccagtcatc ctgcccgtag aacatcacac attatcatcc tgttctcccg cttcgtttaa
      421 atttatttat caatcaattt gacttaagag ggcggcgtgc tacattaatt aacagtaata
      481 tgtttatgta atattaagtc aactatgcaa tcattacatg ggaattgtct aattgcgtac
      541 gcaagacata aatatattct caccatggtt aatggtgaat atcgctattt taatggtggt
      601 gacctggttt ttgcggatgc aagccaaatt cgagtagata agtgtgttga aaattttgta
      661 ttagtatcaa gggatacgct ttcattattt ctgccgatgc tcaaggagga ggcattaaat
      721 cttcatgcac ataaaaaaat ttcttcatta ctcgttcatc actgtagcag agatattcct
      781 gtttttcagg aagttgcgca actatcgcag aataagaatc ttcgctatgc agaaatgcta
      841 cgtaaaagag cattaatctt tgcgttgtta tctgtttttc ttgaggatga gcactttata
      901 ccgctgcttt tgaacgtttt gcaaccgaac atgcgaacaa gagtttgtac ggttatcaat
      961 aataatatcg cccatgagtg gacactagcc cgaatcgcca gcgagctgtt gatgagtcca
     1021 agcctgttaa agaaaaaatt gcgcgaagaa gagacatcat attcacagtt gcttactgag
     1081 tgtagaatgc aacgtgcttt gcaacttatt gttatacatg gcttttcaat taagcgagtc
     1141 gcagtgtcct gtggatatca cagcgtgtcg tatttcattt acgtctttcg aaattattat
     1201 gggatgacgc ccacagagta tcaggagcga tcggcgcagg gattgccgaa ccgtgactcg
     1261 gcggcaagta ttgttgcgca aggaaatttt tacggcactg accgttctgc ggaaggaata
     1321 agattataga attttactca gacataaaaa aaacctggca taggggaccg ggaagaggat
     1381 agtctgccgt ctccagacta ataaaccgct ataacactcc ctgttggcac gggaaacttt
     1441 gtgctctcag taagttaaat ataactttta ctggaaataa gatcagccat ttttttataa
     1501 acataagcta tacgctgtgc gaaaatatat tcgtgctgca tttacttatt atcaattaac
     1561 tgttatgcaa aactactttg tggataaatt ttggtcctgc caaatctggc agtttttgcg
     1621 ctaagaaaca gtctggcaac atttcattag tatactgaaa ttgaaataat cgcagtatga
     1681 aatataaggg ataatcatga ctcatgtctg ctcggtgatc ctcattcgtc gttcattcga
     1741 tatttatcat gaacagcata aaatatcgct gcataacgag agtatcgtgc tgctggagaa
     1801 aaatttggca gacgattttg cgttttgttc accggatacg cgacgactgg atatcgatga
     1861 gctgacagtt tgccattact tacaaaatat tcgtcagcta ccacgcaatt tagggttaca
     1921 tagcaaagac cgtctattaa ttaaccagtc accccccatg ccgctggtga cggcgatttt
     1981 tgatagcttc aatgaatccg gggtaaattc accgatactg agcaatatgc tctacctttc
     2041 ctgtttatcg atgttttctc ataagaaaga actgatcccc ttacttttca atagcatcag
     2101 cactgtttca ggaaaagttg aacgccttat tagctttgat atcgccaaac gttggtatct
     2161 gcgcgatatc gcggaaagaa tgtataccag cgagagtctc atcaaaaaaa agttgcagga
     2221 tgaaaatacc tgtttcagta aaatattact cgcttccagg atgtcgatgg ccagacgatt
     2281 actcgagtta cgtcaaattc ctctgcatac tattgcagaa aaatgtggct atagcagtac
     2341 gtcgtacttt ataaacacat ttcgacaata ttatggtgta acgccacatc agtttgcgca
     2401 acattcgcta ggtacctttt cctgacatat tttgcatttg aatattggtc aggatctcac
     2461 acctgcttca tgtgaaactc ttccctgatg atttctgccg ggctaccggc tagttctctt
     2521 tcgcagtttg ccaggcggta taggtatttt caggaggaaa agactcggca tgtttgggat
     2581 tattaagctg acaattcata cgattacggg aatgtgggtc agtattgtgc tgttcaaatt
     2641 gatgacgaat ggctggagtg gtttctactt tcagtgctgt gtactaagcc tggtattcct
     2701 gacggttagc tggttgttga gtggtgaatg gttagcagga aagagtaagg ctgaaccttc
     2761 acgttcaacc ttactctcat ttacacgtta cgctttttta aagcgggcaa agagatgttc
     2821 cactacaacg aaaaagaccg gaacgaagta aattgccagc actgttgcgg caaacatccc
     2881 gcccatcacg ccggtaccta ccgcgttttg cgcgccagaa ccggcaccat gactgataac
     2941 cagcggcagc acgccgagaa taaaggccag agaggtcatc aggattgggc gtaaacgcat
     3001 ccgcgccgct tcgatgattg cccctatcgg cgttttccct tctttctgca tcatctcaac
     3061 ggcaaattcg acaatcagga tggcgttctt ggcggaaagc ccgatggtgg tcagcaaacc
     3121 aacctggaag tagacgtcat tacttaagcc gcgcagatcg gtggccagta atgcgccaac
     3181 gacgcctaac ggaacaacca acatcaccga gaacggaatt gaccagctct catagagtgc
     3241 ggcgagggcg aggaacacca cgaccagtga aatggcatac agtgcaggag cctggtttga
     3301 ggataacgct tcctgatacg acagtccggt ccatgagtag ccgacgcctg ccggaagttt
     3361 agcgaccagg tctgccataa atttcatagc gtcaccggta cttttcccgg ccgccgcttc
     3421 acctaaaatc tccattgacg ggatgccgtt gtagcgttcc aatcgcggtg aaccataggt
     3481 ccattcggta gacgagtagg cagaaagcgg tgccatcgtg ccagaggcgt tgcgtacata
     3541 ccattggttg atgttatccg gcaacatacg gaacggcgtg cctgcctgga catacacttt
     3601 tttcacccgc ccctggttga ggaagtcgtt cacgtagctg ctgccgaagg cggtggaaat
     3661 tgtctggttg atatcagaca gcgccacacc cattgcctca gctttcgcgg cgttgacgtt
     3721 cactttgaac atcggcgtat cttccaggcc gttcgggcgt accccggtga cctggtcagg
     3781 cgattgcgct gccagtgata acagctcgtt tcgtgcctgg gttagttttt cgtgccccag
     3841 gttaccgttg tccagcagtt ccatatcaaa acctgacgcg gtacccagtt cagccaccgc
     3901 gggtaagttg aacgggaaga cgacggcttt attgatactg cttaacgcaa tcattgcccg
     3961 ctgaatgatc gcggtaaccg agttttcctc accgacacgt tcagaccacg gcttgagact
     4021 gataaacgcc aggccgttgt tttgcccctg gccgctgaag ccaaagccgc caacggtaaa
     4081 caccgactga acattatctt tctcttttgt aagataataa tccgtcacct gttgcagcac
     4141 tttcgtggtg ttaaccatgg tggcaccgga aggtaactgc gcggtggtca taaatacccc
     4201 ctgatcctct tctggtaaga aagaggtcgg tgtacgcagg aacagcaccg ccatcccggc
     4261 gcaaatcagc aggtagacca ccatgtagcg accggtacaa cgcaacagcg agcgggtgct
     4321 atcggtatag tgctgagttg atttttcaaa cagcgtgttg aagcgtgcga acagggcgtt
     4381 aggtttgtga ccgccttccg gcgcggcttt cagaatggtg gcgcacaggg caggggtcag
     4441 gctcattgcc acaaatactg aaagcagcat ggaggagatc agcgtgatgg agaactggcg
     4501 gtagatctcc ccggttgcgc cgctcataaa ggccatcggc ataaacactg cggaaagaac
     4561 aacagcaata ccgaccagcg cacgttggat ctgccccatc gatttatgcg tcgcttcctt
     4621 cggtggtagc ttatcttccg caatgacacg ctcgacgttc tccaccacca cgatggcgtc
     4681 atccaccagt aaccctatcg ccagcaccat cccgaacata gttaacgtgt tgatggtgaa
     4741 accgaccgcc gacaagatcg caaacgtccc gagaataacc accggtacgg caatcgtcgg
     4801 gatgattgtg gcacggaaat tctgcaaaaa cagatacatg accaggaaga cgaggatgat
     4861 agcctcaacc agtgttttaa aaacttcctg aatagaaatt tcgataaacg gcgtggtgtc
     4921 gtaaggataa accgtcttca gacttgcggg gaaataggct gataagcggt tcagctcctc
     4981 tttgactgcc cgcgaggtat ccagggcgtt tgctccggta gccagtttga tggcgatccc
     5041 ggcagcaggt ttgccgttat agcgcgccac ggtggaataa tcttccgctc caagttcgac
     5101 gcgggcgaca tcacgcagca gcacttgcga accatcttgc tgaactttca acaggatttt
     5161 gccaaattct tccggcgttt gcagacgcgt ctgcacaatg atcgaggcgt ttagttgctg
     5221 gtctgccgcc tgtggcatgc cacccagttg accaccggaa atctggttgt tttgcacctt
     5281 aatctgggaa ataacatcgg aaggtaccag attgtattta ttgagttttt gcgggtccag
     5341 ccagatacgc atggcgtact cggaaccaaa gagctgtacg ctaccaacgc ccgcggtacg
     5401 gcttagcggg tctttgatat tagacgctac atagtccgcg atatcgtact ggttgaggct
     5461 gccgttatca gaaataaacg ccgctaccat cagaatatta ctgctcgact tatcaacgct
     5521 aatcccctgc tgctgcaccg cttcaggtaa tgaaggcata gcgagttgca gtttattttg
     5581 cacctgaacc tgtgcgatat caggagatgt cccagtctcg aaggtcagag tgatagaggc
     5641 attacccgcc gcatcactgg ttgaagacat gtacatcagg ccatcaagcc cattcatatt
     5701 ttgctcaatc acctgagtga ccgagtcttc taccgtttgc gcatcggcac ctggataggt
     5761 agcgctgacg gtaatggtcg gtggcgcaat ctgcggatac tgcgcaaccg gtaagttcat
     5821 gatcgccaga ccacctgcaa gcatcataat aatggcaagt acccaggcaa aaaccgggcg
     5881 atcaataaaa tagttagcca tgaaagtccc cttaagcctg caacgttatt gtttcgattc
     5941 ggtgctggcg ttttcctggc tggaggaaat tgctcgtgct ttgatacccg gacgaatgcg
     6001 ttgcaaaccg gaaacgatca cccgatcgac agcctgcaag ccagaggtga caacccactg
     6061 gtcgccgatg gctttgctgg cttcaatttc gcgtagctgc acaacatcgt ctttatccag
     6121 aatgagcgcc gttgctttac cctgggcgtt gtgggtgacg ccttcctgcg gcaccagtaa
     6181 tacattctgg cggctacctt catccactaa tgccgtgacg tacatgccag gcagcaagtc
     6241 accatttggg ttggggaaaa tcgcccgtaa cgtcacggag cccgtggttt catccaccgt
     6301 cgggtcggag aatttcagtg tgccggtctg gctgtagcgt ttaccatttt ccagattgag
     6361 ctgtactggc gtactgccct gaacctgttt gatttgccca ctggcgacct cttctttcat
     6421 gcgcaagaaa tcctgcaccg actgcgtgag atcgacataa atcgggtcca gacgttgtac
     6481 ggtaaccagc gaatctgcct gattagcggt aacgagtgcg ccgacggtca ccgacgattt
     6541 cccgctgacg cccgtaatcg gcgaggtgac attcgcgtat tgcagattga tcgtcgcctg
     6601 ttcaacagcc gctttggcga cggtgacatt ggcttctgct tcattcagct gggtgcgcgc
     6661 ggtgtcgtaa tcctgacggc taacgtagtt ggtcttcagc aacgatgcct ggcggttaaa
     6721 ggtgatgcgg gcattgctgg cggtagagag cgctttcgcc agcgagcctt tggcggagtt
     6781 tagctcggcc tgtaaaggtg caggatcaat ctgatacagc gaatcgccct ggttcacttt
     6841 atcgccttcg ataaagttgc gtttaatgat aataccgccc acctggggac gtatctcggc
     6901 aacttcataa ggaacggttc taccgggcaa ttcgctcaac acattgaccg aaccggggga
     6961 gagtgtgacg acaccgacct caggcgtcat ggcggcggcg ttttccgccg atttgtcatc
     7021 gcaggcggtg agcatcgcgc cgcagaataa caacggtatt aacagctttc ttcttctgtt
     7081 cattttagtc cctgaaaatt cttgagaaat aacggttctt taaattgcgc gcgaggagag
     7141 atatgaggga tttacagacc agcggcatag tggggttgtc agccagtaag gtgggataca
     7201 ggcacagtga tcgacatggt gaggtcaacg acaaaaaaaa tgttgccgtt ctgccaacag
     7261 ttcctgccag cattcgggca acgaagggtt ctactggtgg atacacatac caggggaata
     7321 aagtcgtttt agcctctcct ttagtaatca ccgggggtaa tgaaatcagc atctgcatcc
     7381 ctcgtcatgc cagccatcaa tttcagttgc ttatgtcctg actaaaaata agatgtgata
     7441 cccagggtga cgatgtcgct catacgtctt agtttcaact tgtacataat gttgaatttc
     7501 tgaatcttta atgtttgttg cgaaatattg agcgtcaacg tgatattgct ttcattttta
     7561 tttttcagaa tcagttgcat aattttgaac tgattatgtg aaaaacataa ttgtgaattc
     7621 ttatggggca agtgtttacc ataagtaatc tcaagaagat ttttgatact ttctttgcgg
     7681 ctaacaaaat aaataggcgc tttagctttt agtttactga tgtgataagg tgccaaaaca
     7741 ataattctct cggcatctaa tttctccaga aatttaatcg cttcttcatc aaggatatga
     7801 ttgtgatagg tatcaatgat aaccttgaag ggtttattgc ctactttttt gatctctgac
     7861 agggaattga tttttatcat ttcgtgatta tctttcaact gccaaaagcc ctgtaaaaga
     7921 aaagaatctt tcgtcatgag aaaaatcata acttgctcct tagccgttat cgtttcgaac
     7981 atgtcatcct tttcattatt tacatccttg tccgaatcgt tgttcaatat agtaaacgcc
     8041 tataagaact ttacccttcg tgaactaata cgtctattaa cactaatcaa tacttcagat
     8101 ttatccatca cgcactccat atattgatcc taagtaagat tcctggttgt tatcagcttg
     8161 taaatagtaa acaaaaagtt aacgtttgcg gattactgcc caagaataag ttatcaataa
     8221 ccagtttgtg atctctgaag aatattacta aagttaaaat gtaatccgat ttaaatatcg
     8281 agtctccttg tttcgactta agctggcaat tggattgcca gctttctttt aacgcattga
     8341 aattacctga gtaaataacg cattcatgtc ttcaggtttt tatatagcgt ctggagacac
     8401 ggatatttat gcaatgtaat caacgccagt tgcaaaaaaa tgaacccgga ttacttattt
     8461 aaccgcccat agcatcaacg cttacggaac tctttgttca ctttcccaca gcacttttaa
     8521 aacattaaac ctgactacgg aaaatatcag ccatgataat gtttgaaatg gctaatttgc
     8581 catggagtga aaaaaattag atgaaattca gtaggttgaa ataatcacta gcaggtaatt
     8641 atttcaatga tagtgcgcaa ttgatctaca acactgcgta gcggagagag tattaatcgg
     8701 atcatagtca catcaagtga ctatgatccg ggtgacaacc ggggtaatta ttgctgctta
     8761 acgaacaaac tggcgaagct gaacaggctg gcggcgctaa atatcagttc aattcccacc
     8821 agtgtggaaa ccagcgttac agacaccatc ggcgttgcac caaggaatat ccaggcaatg
     8881 acgatatcca gcacaccaat aacgagctgt agccagctgc ctttcattga acgctgacga
     8941 taccaactca tcaggcgaat aacccctgca acacagaaca aaccggcaat aaatgccgca
     9001 atggcaaaaa tgcccagctc cggtgcgcgg atgaagaaat agccgatcaa taaataggcg
     9061 actgcgacga ggaaaccgga taataccggc cagaaattat gactgcggtt gctgaataac
     9121 ccgacaataa gcgcaatacc cgagcagatt aataatgcac ccactactgt gcttaaaata
     9181 tcgccagaga cgaacgggaa actgatacac agcaacccga cgataaacag cagcacggca
     9241 ataaactgga ttgctctgcg atgtttttta agcatctcca gatcaaactt caaaattgtt
     9301 gccttatcta tatataacat agaaccaccc tataaaatta agaagaaaat cccctgctat
     9361 caatctatgc caaaaacgcg tctaagaatg cagtcgattt aataaaaatt tcctaattgc
     9421 agtatctgat gcatctgtaa ctcattgtat tgaaataaaa atatctgatt ttgatatttt
     9481 ccatcaacat gacatataca gaaaaccagg ttataacctc agtgtcgaaa ttgatttgtg
     9541 acggctcttt cactttatag ttgaggatat tacgatgaaa aaagtattag gcgttattct
     9601 tggtggtctg cttcttctgc cagttgtgag caatgcagcg gatgcgcaaa aagcagctga
     9661 taacaaaaaa ccggtcaact cctggacctg tgaagatttc ctggctgtgg acgaatcctt
     9721 ccagccaact gcagttggtt ttgctgaagc gctgaacaac aaagataaac cagaagatgc
     9781 ggttttagat gttcagggta ttgcaaccgt aaccccagct atcgttcagg cttgtactca
     9841 ggataaacaa gccaacttta aagataaagt taaaggcgaa tgggacaaaa ttaagaaaga
     9901 tatgtaattc cgggaatgcg ttacatcgta cttccttgca tattgaacag gccggaatat
     9961 cttctttaaa agcagctatt cctcctgttc atatataatc tatatattga atgggttaca
    10021 aaatgaatat ttcatctctc cgtaaagcgt ttatttttat gggcgctgta gcggctttgt
    10081 cactggtgaa cgcacaatct gcgctggcag ccaatgaatc cgctaaagat atgacctgcc
    10141 aggaatttat tgatctgaat ccaaaagcaa tgaccccggt tgcatggtgg atgctgcatg
    10201 aagaaacagt atataaaggt ggcgataccg ttactttaaa tgaaaccgat ctcactcaaa
    10261 ttcctaaagt gatcgaatac tgtaagaaaa acccgcagaa aaatttgtat accttcaaaa
    10321 atcaagcatc taatgacttg ccgaattaat gaggtacaag taaaaaggag tagcaagttg
    10381 agccatcttg ctgctccttt ttgcattttt atatgacagc agaatttatt atacgtctta
    10441 tactcgcggc aattgcctgt ggcgctattg gcatggaaag gcaaatgtga ggcaaaggag
    10501 cagggttacg cacacatgta ttaattggca tgggaagcgc cctgtttatg attgtttcga
    10561 aatatggttt tgctgacgtg ctgtctttag atcacgtcgg actcgacccc agccgtattg
    10621 ctgctcaggt ggtgacgggc gtcgggttta tcggtgcagg taacattctc gttcgtaacc
    10681 aaaatattgt aggtttgacg acggcagcgg atatctggat gaccgccgct ataggtatgg
    10741 ttattggcag tggtatgtac gaattgggta tgtatggttc agtgatgacc ttgctggtgc
    10801 tggaagtctt ccatcaatta accttccgcc tgatgaacaa aaattaccat ttacagctga
    10861 cattagtgaa cggtaatacg gtatcaatgc tcgactggtt taagcagcaa aaaataaaaa
    10921 cggatttagt ttcgttgcag gaaaatgaag atcatgaagt ggtcgccatt gatatccagc
    10981 ttcatgccac aacgtcgata gaagatctgt tgcgattatt aaaaggtatg gcaggggtga
    11041 aaggcgtttc aattagctaa tctgtgtggc agcgtagtca gactcaccgt aagcctgaaa
    11101 ttcacaccag ataatcaata tgctgatggc gtaccagctc attgatccgc ttaagattga
    11161 ggatcatcat gatattgtgt ttatggcagt agaacgtttt tagcgttatt ttcagtttct
    11221 ccagaatatc ctccgttgtc atttgattcg caatgcagct cagaacctga tgttgcttgc
    11281 gcgaaagtga cacagccgct tcaggcacag agcagtaact gccattgatg agtgcgacaa
    11341 aatcgatgat agtgatagtc cgcggaacaa aggtcaccgg cactttcccc aggcagcgtt
    11401 taatattaaa gggggagaaa ataatcacat ggacaggttt taatcgttca atttgagtga
    11461 gaaaattaga atgaaataca ttattcatta atgtatcaat aatgacaaag gcattctgat
    11521 gcaacattcc gtcgatctct tcttcgttct gtatatgaac gacattacct ttgctcaaaa
    11581 tgtttttcat cgcggtgaag aacatcgtat ccctggtaat tataagaaac ataaccgact
    11641 cctggtgcgg acattaattt tataatcagt ttgccaaagg taattaacag gacagggctt
    11701 ataataataa tagttagctt gctgtgtatt aattttatgt aatgcacgat gcagatgctg
    11761 agaaagcatc tgcatctttc ggtggtgtta tttgaccagc tcaggtgtta cctgactcac
    11821 cgcattggtg tagtaaggcg caccccagcc cggttccggc cagaatgcac catagccgta
    11881 atcccatagg ttataggtgg tattaaccac ttctctcaaa tgccacacct ggatgccctg
    11941 catattcact tccaggaagt tatacgggac tttattgata aagccaggtt gttcaccctg
    12001 aatggtaccg aggatggtaa caaagtgatt acgatagttc actgggtcaa ggaagccgct
    12061 ttgtctggcg agcagtcggc cctgatagtt ggcttcaata tcaggtttcg catagctatc
    12121 caacggtaat acagcgattt ctaacaacgt atccgttttg ccattgataa cgttgataac
    12181 cttcccacca aagcgcgctt gttgaccaac atataacccc ggctggttat gaacagcaac
    12241 aaaacttttt tgaatatcag gttggttatt gcctttgata ttttgcggaa ttgaactaca
    12301 tgcggcaagc aaaaatgaaa ggctgaggat gagtgcacct tttgtcatgt tcatgttact
    12361 atccttatca acaaatatta aaaccataat agatatttct ttatagtttt catctgattc
    12421 tgaggcgata tgcctgatag taacgtaaac ctgtctgatg tttatatccc ttttgtttag
    12481 ttcaattcca ttgattttgg ggcgtggcat aagtatccat cgccccataa tataatcctt
    12541 tgttttaaaa ttacataaaa tctattttta ttcaataatt ataaagtgct aataatcaat
    12601 attatggtat tatattctga taatgatttg ataagcgaat tcttttgcca gatggtattt
    12661 ctatttccac cccataattt atatcttttt cattaggaag tggcctcttt aaataaggcg
    12721 tgtgtgacat tttttttggg ttaagcgtct cgaattgaaa tacttcgaac tgatattcag
    12781 acatttctgc ccatgtttga attttattgt atcgagagag tgtcgtagag gctttaactt
    12841 gcttataaca ttgtttttgg aattcttgct gatattttaa tatgtcattg tatgaaagat
    12901 tggttatcct ggcctctaaa aatttaatta ttgtcgaagc aatttccgct tttgctcgta
    12961 aaaagttgtc attaatggtt aataatgttg aaaataaacc ttcgatttgt ttgtcaagat
    13021 attgtccatc tttatataat ttgggggggt agggtgttct ttatgtaaaa aatagtgtca
    13081 cctaaatttg cgtcagtgaa atttatatta agtagatctt cgaaataaaa ccttgacaag
    13141 gttagaacga acccggaaag gttctgtcct gtcatattga aatcaataaa gttggttccg
    13201 gcaaagactt tcatcctgtt tttattttca ctgtgctcaa tatataactt cgtcattttt
    13261 tgatacaggc tttgaatatc ttttatatta gttggtaagt cagctcgttg ttcagcaata
    13321 aaattagtat ctgaaaacat ggtttggaca ctgaatgtta tgggtattcc ctcttctacg
    13381 ctaattttag ttatgattgc cttgtcgggt ttaggattag cgacaacaat gattcgacat
    13441 tcagcacttt tgtttttttc atatctaatg ttattaatct gattaagtat tgattgtgtc
    13501 tgttgcgtaa gtggtgtcga acttatcgtt tcaatgttat taataagact tacaagttga
    13561 accacaactt ttgagtagtc tgcatttgta tatgtggtgt tcgtgtggca tgcattaatt
    13621 tgttggagtt gttgttgcgc taaatcaaat tgttcagggt tgtatccttc tccagagaat
    13681 gtggaattaa tgggttgttg ttcttcccaa ttatcacaag gccacttcgg tgtgtctggc
    13741 gttttaacat tatcggtatt tgttgtgcag ttataaatat tgccgtgata tgtatttatt
    13801 atacctgggg taaagtcaat tgacataaca ttccttattc atcatctgtt ttatgctaag
    13861 gtttttaaat tggataatta gaacaggaat ggattttctt ctacacacaa taaatataat
    13921 gcgttatatc ttcctgatat aattaccttt aaattccctt tcatttccac ccggtaatat
    13981 ttgtgtataa aaaaagcagt gatagtatcg taaaggaaaa cgttaacaac tatcaaaaag
    14041 cgctcatttt aaaaagttat tatgttctcc gatagtgtgt gaagtaatat ttttgtgatg
    14101 ttttagatgt gtaataatga accaggttaa agtgtattta aaaatgtgtt gtattagcga
    14161 ctgaaatctg ccttttaaaa aggaggaggg tactgagaca aagagtcatt gcttctccga
    14221 ta
//
LOCUS       DAJVUP010000107        13836 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.107, whole genome shotgun sequence.
ACCESSION   DAJVUP010000107 DAJVUP010000000
VERSION     DAJVUP010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13836
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.107"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(130..2056)
                     /locus_tag="OQQ75_002867"
                     /pseudo
     CDS             complement(130..2056)
                     /locus_tag="OQQ75_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001017264.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            2463..3161
                     /locus_tag="OQQ75_002868"
     CDS             2463..3161
                     /locus_tag="OQQ75_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HCS1977123.1"
                     /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRISMTSIFGLASLG
                     IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPTHESF
                     IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI
                     SIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP
                     ALLLAMPLSAAWFA"
     gene            3267..3342
                     /locus_tag="OQQ75_002869"
     tRNA            3267..3342
                     /locus_tag="OQQ75_002869"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3300..3302,aa:Phe,seq:gaa)
     gene            complement(3491..4027)
                     /gene="yghD"
                     /locus_tag="OQQ75_002870"
     CDS             complement(3491..4027)
                     /gene="yghD"
                     /locus_tag="OQQ75_002870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GspM family type II secretion system protein
                     YghD"
                     /protein_id="HCS1977124.1"
                     /translation="MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAV
                     VFLFSVGYYVLIWQPLSERIVQQETMLQQLVAMNTRLRSAAPDIIAARKSATTTPAQV
                     SRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
                     AAEKTGMVNVQRLEFGRG"
     gene            complement(4029..5207)
                     /gene="gspL"
                     /locus_tag="OQQ75_002871"
     CDS             complement(4029..5207)
                     /gene="gspL"
                     /locus_tag="OQQ75_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HCS1977125.1"
                     /translation="MSSILEIFFPLCAADPIHWQRRTPDVEHGIWSDVANEQLQQWLQ
                     TDAIRLYIPGEWISVWQVELPDVARKQIPTILPALLEEELNQDIDELHFAPLNIDQQL
                     ATVAVIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGVMAGDAQRVICRIDECRGWS
                     AGRALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAVTTYGEP
                     EGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQA
                     EEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEM
                     RGFTFDQKRQILHLQLRAANFASFDKLRSALATDYVVQQDALQKEGDAVSGGVTLRRK
                     "
     gene            complement(5204..6181)
                     /gene="gspK"
                     /locus_tag="OQQ75_002872"
     CDS             complement(5204..6181)
                     /gene="gspK"
                     /locus_tag="OQQ75_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HCS1977126.1"
                     /translation="MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQ
                     EYQQALWYSASAESLALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQ
                     ACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRL
                     GREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMIRQQININ
                     TLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQL
                     KTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGESE"
     gene            complement(6184..6783)
                     /gene="gspJ"
                     /locus_tag="OQQ75_002873"
     CDS             complement(6184..6783)
                     /gene="gspJ"
                     /locus_tag="OQQ75_002873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspJ"
                     /protein_id="HCS1977127.1"
                     /translation="MRRTRAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVADH
                     DQKLNLMQQTMSFLTHDLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGV
                     VNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDG
                     TRWQESWSSVQAIPVAVRMTLHSPQWGEIERIWLLRGPQ"
     gene            complement(6780..7151)
                     /gene="gspI"
                     /locus_tag="OQQ75_002874"
     CDS             complement(6780..7151)
                     /gene="gspI"
                     /locus_tag="OQQ75_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HCS1977128.1"
                     /translation="MKRGFTLLEVMLVLAIFALAATAVLQIASGALSNQHVLEEKTVA
                     GWVAENQTALLYLMTREQRAVRHQGESDMAGSRWYWRTIPLNTGNALLQAVDIEVSRH
                     EDFSSVIQSRRAWFSAVGGQQ"
     gene            complement(7211..7711)
                     /gene="gspH"
                     /locus_tag="OQQ75_002875"
     CDS             complement(7211..7711)
                     /gene="gspH"
                     /locus_tag="OQQ75_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001115132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspH"
                     /protein_id="HCS1977129.1"
                     /translation="MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDF
                     LTRFAQFKDRAVIEGQTLGVLIDPPGYQFMQRRQGQWLPVSATRLSAQVTVPKQVQML
                     LQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYS
                     AAQNAC"
     gene            complement(7715..8170)
                     /gene="gspG"
                     /locus_tag="OQQ75_002876"
     CDS             complement(7715..8170)
                     /gene="gspG"
                     /locus_tag="OQQ75_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003912123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HCS1977130.1"
                     /translation="MNSLSRTHKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKA
                     NRQKAISDIVALENALDMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRL
                     PKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ"
     gene            complement(8187..9410)
                     /gene="gspF"
                     /locus_tag="OQQ75_002877"
     CDS             complement(8187..9410)
                     /gene="gspF"
                     /locus_tag="OQQ75_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HCS1977131.1"
                     /translation="MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEA
                     RMNASAGGMLQRRRHAHRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHV
                     KSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
                     RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAM
                     SDALQASGVYWLAGLLALLVLGQWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFS
                     RTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGSSLRAALAELRLFPP
                     MMLYIIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVI
                     AILEPMLQLNNMVGM"
     gene            complement(9410..10902)
                     /gene="gspE"
                     /locus_tag="OQQ75_002878"
                     /pseudo
     CDS             complement(9410..10902)
                     /gene="gspE"
                     /locus_tag="OQQ75_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
     gene            complement(10902..12962)
                     /gene="gspD"
                     /locus_tag="OQQ75_002879"
                     /pseudo
     CDS             complement(10902..12962)
                     /gene="gspD"
                     /locus_tag="OQQ75_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020234996.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
     gene            complement(12992..13821)
                     /gene="gspC"
                     /locus_tag="OQQ75_002880"
                     /pseudo
     CDS             complement(12992..13821)
                     /gene="gspC"
                     /locus_tag="OQQ75_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016238556.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspC"
BASE COUNT         3117 a         3979 c         3567 g         3173 t
ORIGIN      
        1 ggcgacggcg gaacaaagct gattcgcgac gtaagaaagt ggcaggctca tatgacggac
       61 ctctgtaatg cggtatccaa cccgcgaata tcagcgtgat tcaccgtcgg atttactgct
      121 acgtcgccct cagggaatta aacctaaaaa gaaaatcgtc aaaattagag attccggttt
      181 gacacggaaa gtcatatcag cgctatgcgc atcctggggg ttcatcacca ctgacgggaa
      241 actctgctgg cggaacatcg ctttttgtag gtctttgacg tcgaaactga catacagatc
      301 gtgcatctcc tgacacaact ggcgcaaagt gtagtcgcga tagcgcaccg gatatttgtt
      361 ataaacgctc ggcaacacct cagccagcgg cgagtcatcc tcaatatgct gttcaaactg
      421 cgccaacatc tctaccagtt gtgccagctt ctcgtggctt tccgccggag ttaataagaa
      481 cagaatggag ttgagatcgc acttctccgg cacaatgccg ttctcacgca gatagtgcgc
      541 cagaatcgtc gccggaacgc caaagtcgct atattcgccg gtttcggcat tgatacctgg
      601 tgtagtgagt aacagcttgc acggatcaac aaaatactga tccgcggcat atccttcaaa
      661 gccgtgccac ttcgcccccg gctcaaaact gaaaaaacgg cggtcgctgg ctaacactga
      721 tgtcggataa tcctgccaca atttgccatc aacaacgggc gggataaacg ggcggaacag
      781 cttacagcgc gcaagaatag ccttgcgcga ctcaataccc aactcaacgc actcagccca
      841 cagccgacgc ccactctccc cttcatgaat tttggcgtta acatccagtg cagcaaacag
      901 cggatagaaa gggctggtag aagcatggag cataaaggcg ttattcaacc gcttatgcgg
      961 gcaaaaacgc gcctgtccgc ggatatggtt atctttttta tggatctgcg acgtctgtga
     1021 gaatcccgcc tgctgtttgt gcaccgactg agtcacaaag atccccggat cgttttcgtt
     1081 aagttctaat agcagcggcg agctatccgc catcatcggg ataaactgtt cgtaaccgac
     1141 ccacgcggaa tcaaacagaa tgtaatcaca cagatgccca acggtatcga tcacctgacg
     1201 ggcgttatag acagttccgt cataggttcc cagctgaata atcgccaggc gaaacgggcg
     1261 cggcagctcg gctttttctg gcgcaacgtc gcgaatttgc tggcgcagat actcttcatt
     1321 aaaacagtgc gcatcaatac cgccaatgaa accaaacggg ttgcgtgaag cttccagata
     1381 gaccggcgtc gcccccgcct gaatcagcgc gccgtgatga ttcgacttat ggttgttacg
     1441 gtcgaagagc accagatcgc cacgcgttaa cagcgcattc gtcaccactt tattcgctgc
     1501 cgatgtgccg ttcagcacaa aataggtttt atcggcatga aagactttgg ctgcgaattt
     1561 ctgcgcatct ttcgccaata agcagatcgc ccaattttac gtcagcgtta cacatatcgg
     1621 cgcgaaagac gttctcacca aagaaatcgt aaaaatggcg tccggcagga tgctttttaa
     1681 aaaacgcacc atgttgatgt ccagggcaag caaaggtgct gttgcccatc tcaacgtact
     1741 gcgtcagcgt gtcataaaac ggtggcagca aattctcttc atactgacag gctgcggatt
     1801 ccagctccag ccactgctgc tcgttgccgt tgattaccgc cgtaacgccc gcaggtaatt
     1861 caacagcatg ttcggaatac aaaaacaccg gtagatgaaa accggtgcgc ttaagcaacg
     1921 caagaatgcc actgcgacta tccgcagcgg taatgacgac tgccacgacg tccgtaaaat
     1981 cagtatctcc caacgccacc acgcgacgat gagaagaaag tcgggatacc agttcactac
     2041 tggcggcaat attcattgat ttcataagcg caaacccgtt tcggggaagt aagaataccg
     2101 gacaaggtgg aaaaccctgc cccatgagat atgggtcaaa ctggtcacca gctccgaccg
     2161 ccagacatca gtaaaagcag aaacgctctg attttactgt tgtcctgcag tgagcgtgcg
     2221 ttaacttcac cgcatgagca gtaacataga aagggaaacg tttcgcgcga aacggcgata
     2281 agcgagagaa tgtaaggagg tggcgtgcat cgggcaaact ccgtacagag aggagaaaat
     2341 tcgcgcaatc atggcacctt tcgctaaagc gtgcaagcca ggactttgcg accagacaag
     2401 ccatcaacaa ggcaaaaagt tcataataag aaaatcaaac aatacagtta acaggaactc
     2461 ttgtggtcat cggccctttt atcaacgcta gtgcagtctt actgggtggc gttctcggcg
     2521 cactgctcag ccaacgctta ccggaacgta tccgcatctc catgacatct atttttggtc
     2581 tggcatcgct ggggattggt attttactgg ttgtgaaatg cgccaacctt ccagcgatgg
     2641 ttttagctac gctacttggc gctctaattg gcgaaatttg tttgctggag aaaggtgtca
     2701 atacagcagt cgccaaagca caaaatctgt ttcgtcactc acgtaagaag ccaacgcatg
     2761 aatcttttat tcagaattat gtcgcgatta ttgtcctgtt ttgcgccagc ggcaccggga
     2821 tcttcggggc gatgaacgaa gggatgaccg gcgatccgag tattttaatc gccaagtcat
     2881 ttcttgattt ctttacggcg atgatcttcg cctgctcgct gggtattgcg gtgtcggtaa
     2941 ttagtatccc attactgatc atccagttaa cgctggcgtg ggctgccgcg ctgatattac
     3001 cgctgaccac accgtcgatg atggcagact tcagcgccgt aggcggttta ttgctgctgg
     3061 caaccggatt acgcatctgt ggcattaaaa tgttcccggt ggtcaacatg cttccagcac
     3121 tccttctggc aatgccgctt tccgccgcct ggtttgcctg acaatgcgtg caatagcggc
     3181 aaagtgatga tagattgtgc agtctgcagt aaattgaaga aatttgattg acgagacgag
     3241 gcgaatcagg tttaatgcgc cccgttgccc ggatagctca gtcggtagag caggggattg
     3301 aaaatccccg tgtccttggt tcgattccga gtccgggcac cactaattct taagaacccg
     3361 cccacaaggc gggtttttgc ttttggatct gacaataacc ttcacgaaaa aagtttgctt
     3421 ataaagtctg ggggaattac tctcgccacg ttaacgagag taattttatt gatactaatc
     3481 tcctgatact ttacccccgt ccaaactcca gccgctggac attcaccatc ccagtcttct
     3541 cagcagcact ggcatcaatt tgtgtcaccc gcagcgcata cttttcatcc agcgcgttta
     3601 accagttcag caggtcatta aacaccaccg gatctatcca gacctgaata ttctccccac
     3661 gctcggctat ccgcttgatg actaccgagt gcgcggaagc actgtcactg ataacccgcg
     3721 atacctgcgc aggcgttgtt gtggcggatt ttcgcgccgc aataatatcc ggcgcggcgc
     3781 tcctcagtct ggtgttcatc gccaccagtt gctgcaacat tgtctcctgt tgtactatcc
     3841 gttcgctcaa cggctgccag atgaggacgt aatatccgac gctaaacagg aacaccaccg
     3901 ctgccagtaa catgcccttt tcacgcggag aacgccccgc caggtgttgt gccagccagt
     3961 gttcgccacg gcttaactgg cgttcacgcc attgctgaaa atagtgaata aatttatcgc
     4021 gtaacatgtt atttcctccg caacgttacg ccgccggaaa ccgcatcacc ctctttctgt
     4081 aacgcgtcct gttgcacaac ataatcggtt gccagtgcac tacgcagttt gtcgaaactg
     4141 gcaaagttcg cggcccgtag ctggaggtga agtatctggc gtttttgatc aaaggtaaaa
     4201 ccacgcattt cgatgtcgga aagtgacgct gatttcaggg tgctggctat cgctgacaac
     4261 tcggcgagca gccgggtatc gtcggcctgt gggcgatatt ttttcagcgc catcgtcacc
     4321 tgagagcgta aattcacaat ccgcttctgc tccgggaaca acgttaagaa ctgttcctcc
     4381 gcctgggtgc ggctttgcgc cacctgttcg ctgacgctcc ataacgtcac gccccgctcc
     4441 actgccagcg caactagaat cagcaatatc ggcagaatca tcacccgcca gcgcgcccac
     4501 tgttttcggt agctgacgcg aggctgccac ggccctgtca gcaggttccc ttccggttcg
     4561 ccataagtgg taacggcggg cagagctgta acggtcaggc gttcagcgtc tgcgccagcc
     4621 catgctgata gcttttccgg tgcaatgccg actacggtta gcgaaagcgg taaatcctgc
     4681 tcattgagct gggcgcggaa catgaccgga gccagcgccc gcccggcgct ccatccccgg
     4741 cattcatcaa tgcggcagat aacccgttgc gcatcgccag ccataacccc acaaggaatg
     4801 gacatccagt ctggcgcgac ggtagcgcgg gtgatgccgt tttcctgcaa ccactgcgca
     4861 atgttgcgca tatgctgttg gtgaatcact gctacggttg ccagttgctg gtcgatattc
     4921 aacggggcga aatgcagttc atcgatatcc tggttcagct cttcttccag taaggcgggc
     4981 agaatggtcg gtatctgctt acgggcgaca tcaggcagtt caacctgcca gacgctgatc
     5041 cattcgccgg gaatgtagag tcgaatcgca tcggtttgca gccattgctg gagctgttcg
     5101 ttagcaacgt cagaccagat accgtgctcc acatcgggtg tacggcgctg ccaatggatg
     5161 ggatcagcgg cgcaaagcgg gaaaaaaatc tcaaggatgg aactcactca ctttctcctg
     5221 tctgatgcca gagaaccgaa aagtgttgtg ggcccatgcg gacaattaac gagttcatcg
     5281 tcagttcaat ctcattcacg gtgatatctg aacgcagcca gaagtaattg ctgtccacgc
     5341 tcaggacggt ttttagctgt tttttagtac gctcatcgac gtcagcaagt agcggctgtg
     5401 caagaaactg atcgacatct tcccagccct tcgccggacg ttgttgtaat aacgcccgcg
     5461 cctgaacggg gcttaaccac gggtcaaaca gcgcctcaag aatcacactt tgcgtgacgt
     5521 ctaaagtatt gatgttgatt tgctggcgga tcatcggcag cgcacagacc agcggtttca
     5581 gtttttgata aagcccggcg tccattccct gtaccacgcg catctcactg atatcagcca
     5641 gcggttgatt ggcggcgtag aacggcaccg aacgggcgag atactcgctg tcttcacggc
     5701 ccagacgtgt ctgcacgctg cggtcctcgt caataaactc ccacaggctt tcggctatca
     5761 gttcggcccg ataagcaggc acatccaggc gcgagatcag ggcaatcaac tgttgtaccg
     5821 caagcggacg cgacgccgtt gtcggctgag caagggcatt caggttaaag caagcctgtg
     5881 cgtcacgcag ggtgaccgca atttgcccct gcggcagagg gaagaaacga gggccggatg
     5941 cccacggctg tgccagatgc acgcgctttt catttttcag gctcagactg agcgcgctca
     6001 gcgccaggct ttccgcactg gcgctgtacc acagcgcctg ctggtactcc tgctggctgc
     6061 gcgttcgccc aagttgttgc tgcattcgcc cggaaagcgt gatggttacc agcatcataa
     6121 ccgccagcaa taccagcacc acgaccagtg ccattccgcg ttttggtggt gaggtgatca
     6181 tgattattgc ggcccgcgta acaaccagat gcgttcaatc tcgccccatt gcggcgaatg
     6241 cagggtcatg cgtaccgcca cagggatcgc ctgtactgac gaccagctct cctgccagcg
     6301 cgtgccgtcg tagaactgca aacggagcga atcggccgga atcaactttt gcattgtcgg
     6361 cttcacgctg cctgcggcat cggtcagcgg ccaggctaac cgttcgagat aaccgtcatg
     6421 aatgcggtaa ccgacggtga gcagattgct gcgcggcaga cgcatcaacg ggttaaccac
     6481 accgccgcgc acaaaacgca ttccttcact ctcagacgcc agcacgccag cgccagccag
     6541 taaagctggt tcacgctggc cctgatcgcc tcttaccgga cgcggcatca tttgggtcag
     6601 atcgtgggtc agaaaactca tcgtttgctg catgaggttt agtttttgat cgtgatcggc
     6661 gacggcgcta ttcacgcgcg tgacgccgtt agtcacctgc tgcgccatca gtgccagcga
     6721 ggcaaaaatg gcaattgcca ccaacatttc cagtaacgtg aaaccagcgc gagtccttct
     6781 cactgttggc ctcccacggc gctaaaccag gcgcgtcgtg actgaatcac cgacgaaaag
     6841 tcttcgtgac ggctgacttc aatatccacc gcctggagca gcgcgttgcc tgtattcaat
     6901 gggattgttc gccagtacca gcggcttcct gccatatcgc tctcgccctg atgcctgacc
     6961 gcccgctgct cacgggtcat caggtagagc agcgcagtct ggttttcagc tacccagccc
     7021 gctaccgttt tttcctcaag aacgtgctga ttactcagcg caccgctggc aatctgtaac
     7081 accgccgtgg cagccagcgc aaaaatcgcc agcacgagca tcacttccag caaggtaaat
     7141 ccgcgcttca tggcatcctc tcatcacatt gattgaggga taacgcgcca tcgtgtgcca
     7201 gctttaccgc tcaacatgcg ttttgcgccg ccgagtagaa gcgcagcgta aacggcgtgg
     7261 cgggttcaaa aggcgaaaaa cggatctgcg gcgtcttctt tttcgcctct ttttgcaact
     7321 ccagttcaat atcgtgcagc gtcaggcgac gacgttgcag ctccagcgca tattccttct
     7381 gccagatatc acttccgggt tgtaacagca tctgcacctg tttcggcacc gtaacctgtg
     7441 ccgataaccg ggtcgcagaa acgggcaacc actgcccctg acgacgctgc ataaactgat
     7501 agccaggcgg gtcgattagc acaccgagtg tctgtccttc aatcactgcc ctgtccttaa
     7561 actgcgcaaa gcgagtcaga aaatcctgtg ccgctttttt cgcgggcggt tcagaatcgg
     7621 tcgcaaacgt ctgtaccacg cccgcactgg caaggccgat aaggaaaatc accagcatga
     7681 tttccagaag tgtgaatccg cgttcaggca ctgcttactg aaactcctgc aaattccagt
     7741 taccgatatc tgcgccagcg ccttccccgt tttcctgacc atccgccccc agggtataaa
     7801 catcaaacag tcctttttca cccgggctga gatactgata atcattgccc cacggatcct
     7861 ttggcagtcg tttgatgtat ccaccagtac ggtagttgcg ggagtccgcc atattggctg
     7921 gctgctggat cagcgcttcc agcccctgtt ctgtggtcgg ataacgcccg ttatccagtc
     7981 ggtacatatc tagtgcgttt tccagcgcca cgatatcgct gatggctttt tgccgattgg
     8041 ctttctcttt gttgcccaac aggttaggca ccaccagact tgccaggacg ccaagaataa
     8101 caatcaccac catcacttcc agcagggtaa aacctgcccg tggtttgtgt gtgcgggata
     8161 acgaattcat gtgataactc cgtaaattac attccaacca tattattcag ttgcagcatc
     8221 ggctcgagga tggcgatgac aataaacagc accacgcccg ccatcatcac caccagcgca
     8281 ggctcaaaca gccccaacgc cagccccacc tgggtatcaa attcccgttc ctggttaaca
     8341 gcggcctgct caagcatggt ttccagttcg ccgctctgtt cgccggaagc gataatgtac
     8401 agcatcatcg gcgggaacag gcgcaactcc gccagcgcgg cgcgcagact gcttccttcg
     8461 cggacgcgat ctgccgccag cagcagttgt tgttcgacat agcgatttgc cgacacggcg
     8521 gcagcggtct gaatgccttc cagtagcgga acactgctgg cggtgaggat gcttaatgtg
     8581 cgggaaaaac gcgccgtatt cagcccgcgc gcaacacggc ccgtcacggg cagacgcagc
     8641 aaggttttat cccagcgcag gcgcatagta ggatttttaa gtagccattg ccccagcacc
     8701 agaagcgcca gcaatcccgc cagccagtaa acgccgctgg cctgtaacgc atcactcata
     8761 gcgataagcg cacgggtgga ggagggtagc gcgtgtccga gatgatcaaa ctgttcgatg
     8821 attttcggca ccactgccgt cagcaaaata gtgaccacgc ccgttgccac caccagcata
     8881 accagcggat agagcatggc ctgcaataga cgtgatttca ggcgctgtcg ctgttcggtg
     8941 taatctgcca ggcgattgag caccacgtcg agatgcccgg atttttctcc ggcagcgacc
     9001 atcgaacaaa acagggaatc aaagacgcgg ggatgttcgc gcaggctgtc cgacagggta
     9061 taaccttcct gaatccggct gcgcagcgcc attccgaggc tcttcacatg cagtttttca
     9121 ctttgctcac tgaccgcctg caagcaggtt tccaacggca ttgctgcctg caccagcgtt
     9181 gccagttggc gcgtgaacag cgccagatct gccgccgcca cgcgacgatg tgcgtgccgc
     9241 cgacgctgca acattccccc tgccgatgca ttcatcctgg cttcaatgtg cacggggata
     9301 agctctttac cgcgcaacaa ctggcgggca tgacgcgcgg aatccgcctc aatcatgcct
     9361 ttggttttgc gaccattacg ctccagcgcc tgatagtaaa acagtgccat tacgcctcca
     9421 tggttacccg cagaacttca tcgagagagg tttctccggc gagcactttc tcaatgccgt
     9481 tgctgcggat acccgcagag tgttgccgga cataacgttc cagctccagc tccccggcct
     9541 gacggtggat caaatcacgc aatgtggcat ccaccacgtc agctcatgga tggcagtccg
     9601 tccgcggaaa cctttgtgat tacaggcggg gcagccctgc ggatggtaca gagtgacggt
     9661 tcgcgcatcg gtaatgccca gcaggcgttt ttcttcgtca gtggcaggcg cggcctgacg
     9721 gcagtcggga cacagcgtgc ggaccagtcg ctgcgccatc acgcccgtca gactggaaga
     9781 gagcaggaaa ggctccacgc ccatatcctg caaacgcgtg atcgccccca ccgccgtgtt
     9841 ggtatgcagc gtggaaagga ccaggtgtcc ggtaagcgat gcctgaacag cgatttctgc
     9901 ggtttcggta tcgcggattt caccgaccat caccacatcc gggtcctgac gcaaaatcgc
     9961 gcgcaggcca cgggcgaagg tcatgccgac gcgggtgtta acctgtgtct gaccgatccc
    10021 ttcaatcatg tattcgatgg ggtcttcaac cgtgagaatg ttacgcgaat ggttgttcag
    10081 ctcctgcaat ccggcgtaca gcgtggtgct tttgccggaa cccgtcggcc ccgtcaccag
    10141 aaagatgccg tgcggtttgt gtaacagctg gcgcaactgc acggtcagtt gctggctaag
    10201 ccccagacgc tccagcgtca ggcgggcctg gtttttgtcc agcagtcgca gcaccacgcg
    10261 ctcgccccag gcagaaggca tggtggagac acgcacgtca atcgcccggc cgcccagcag
    10321 cagcgcaata cgtccatcct gcggtacgcg cttttcggcg atatccagcc gtgccatcac
    10381 cttgatacgc gataccagca gcgaggccag tttgcgcccc gggcgcagca tttcatgtaa
    10441 tgtgccgtca acgcgaaaac ggatcaccag actcttttca aacgtctcga tgtggatatc
    10501 cgaagcgcct tctttaatcg cctctgccag catggcgttg atcagtttga tgatcggcgc
    10561 atcgtcgtca ctttccagca gatcttccgt ttctggcagt tcttccgcga gagtaaaaaa
    10621 gtcctcagca gaaccgagat cttccatcag ctggcgagcc tcggaagagt cccgctgcca
    10681 gaccgcattc agccgctgtt caaattcggc ctcgtcgatt tgccgcagcg taaagggcgc
    10741 gttcagcccc cgctgcagct cctgcaaaac agagagcgat agcggatgaa cgtggaggat
    10801 ctccagcgac gcttcgcacc atgccaccag gctaaaccga cggctgaaac tgtagggcag
    10861 acgcacggtc ttggcggtgg tttcctgtgc tacaggcacc attaacgcgt tctcccggca
    10921 ttgaggaacg cgcgaacttc cggcggtaag gcctggtttt gcgctggcag taccggctgt
    10981 gcggtgtgcg gcatcaggct taaaccttgc tcatcacgat agatctgttc ggcgcgcata
    11041 tagttatatt tgcgctgcga cacgccgtct gccgccatac cgtcatgcag aatggtcggg
    11101 cggataaaca ccatcaggtt acgtttttct tttttatccg ccgtcgattt aaacaggtta
    11161 ccaatcaatg ggatatcgcc cagcagaggc actttcgcca cgctttctcc cgcctgatcg
    11221 tccatcagac caccaagcac aatcagctca ccatcgttag ccagcacggt ggttttcagt
    11281 ttgcgctcac caaacaccac gtcgaggctg gtctgtcctt ccaccttcga gacttcctgc
    11341 tcaatcacca tctgtaccgc gttaccttcg ttaatctgcg gcgtgacttt cagcatgatg
    11401 ccgacttttt tcctttctac tgtattgaaa ggattgctgt tattggagcc aacggtagag
    11461 ccggttaata ccggaacgtc ctagcccacc atgaagaagg cttcctggtt gtccagcgta
    11521 gtgatgctcg gcgtggagag aacgttcgag ctggagtcgt ttttaaccgc ctgcaccagt
    11581 gccatccagt cgcctttcac cacgccaacc gccgtaccgc taaatccaga aagaagctgg
    11641 gcgagtgtgg agagatcgcc gttggtatcc ggattaatgg tggtagcgcc gttttcactg
    11701 atcaccgtcg agcctttctg cggtttcgcc tgagaaatgg ctgcccccag cgtaccgata
    11761 gggatctgcg taccattagc aaactgcatt aatccggcat ctttcgacgc ccactgcacg
    11821 ccgaagttga tattgctacc ttcggcaact tccacgatca acgcctcgac gtgcacctga
    11881 gcacggcgaa tatccagttg ttcaattacg ctttgcagcg actgcatgat gtcctgcggc
    11941 gcggttacaa tcagggcatt actgtgtttg ctggcggcga tggatacaac ctcacgcccg
    12001 ctaccgaccg tgccttccgc ctcttcttta gccgccgtga gcgtgccgct gacctgtttc
    12061 agcacatcga ccagatcttc ggctttgctg tatttgagat agaaaacctg gctgttgccg
    12121 ctgcgttcca tttctgagtc cagccgacgg atcaggcggc gcattttgtc ccgcgtggcc
    12181 gggtcaccac tgacaatcac actgttggtg cgttcgtcgg cgacaatttg agatttcagc
    12241 gtcgcaggct ggttctcgcc gctgtttttc gtcaggcttt ccagcacgcg ggcgatttcc
    12301 gaagccgagg cgttatccag cgggatcacc tcttcggtgc gattacccgc gtgatccacg
    12361 cgctggatca cttccgtcag gcgctccaca acggaggcgc gtccggtgag cataatcacg
    12421 ttggagggat cgtaattaac aacgttgcct gagcctgcgc tgtcgatcat ctggcgcaga
    12481 atcggtgcca gctcgcgtac cgacacatta cgtaccggca ctactttggt gaccatttca
    12541 tcgcccgcgt agttgtcgct gccttcaccg accagcggca gcggctcgac tttcgcagcg
    12601 ctggatttca ccaccttcag cacgtcgttt tccatcggta cgacggcata cccctgtgct
    12661 tccagcaggt taaggaatag ctggtaatac tggcgttcat tgagcggggt catggtgcga
    12721 atactcactt tcccctgtac gcccggcccc ataatgatgg ttttattaag gttagcgccg
    12781 acggtttcga tgaacgattt caggtcggta tctttaaaat tagcggtgaa agtggcttct
    12841 tccgcccaga ccggtgaact gcataatgcc gctgccagca ccagcggcag taaacgcttt
    12901 tttgttttga ggccagttgt cttcttacgc cagaccgaca acgtaatatc acgccaaaac
    12961 acgatgaatg attctcctgg attaaatgcg gttagcgcag cgcgatggaa atgtcgtggc
    13021 gcgcaccctt gcgtaaaacc gtaagttgaa tggaatccat tgaaggtaac tgccgcatca
    13081 gagcaatcat tgctcgtgga tcagtgaaat cctgctgatt tagcgcaatg gcgatatcgc
    13141 cttccttgaa accgctggca tcgaacagag aacgatctgc ccccggcttc actgcataac
    13201 cgacaattcc ctccttacgc acaggcgtaa gctggatata gttaaaaatt ttctgcggat
    13261 ctttcgccag tgcctgacgc acggcagtcg gtatctcaac tggcgcactg acagcaggtt
    13321 cagcaacagc ttgctttgct tcgtcactga cagctttttt gttggtcgcg gcaacggtgg
    13381 aacgctcctc ttcagccagg ctcaggcgct ctatttttcc ctgatagcgc agcatcacat
    13441 ggtcgcgatt gatttcctca atcaccgcgt tgtgcgagcc aagcgtttca ccctgcaaat
    13501 agacctgctg tttaccgcct tcttcaataa ccgcgccggg tctggcacca aaggcgatcc
    13561 cgcgcgcacc acattaagac gcgtttctgc cacaggcaca ggttcgggtt gttttaccgg
    13621 cgtggcgacg ggctgatatt tgccaaacca gttttgctgg ctgattaatt gcacgtcatt
    13681 tttatcgaac gtttttgcat ccgcacgggg cggtttattc gccgatgggg aaacagccgt
    13741 atattccgca gaaaaggaga aatagcgcca gagtgaatgc gccacttttg cagaaataat
    13801 aagcagcatc agccagaaca tcccgcgtac aatttt
//
LOCUS       DAJVUP010000108        13705 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.108, whole genome shotgun sequence.
ACCESSION   DAJVUP010000108 DAJVUP010000000
VERSION     DAJVUP010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13705
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.108"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..464
                     /locus_tag="OQQ75_002881"
                     /pseudo
     CDS             1..464
                     /locus_tag="OQQ75_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
     gene            635..982
                     /locus_tag="OQQ75_002882"
     CDS             635..982
                     /locus_tag="OQQ75_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidH family protein"
                     /protein_id="HCS1977132.1"
                     /translation="MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAP
                     DFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMV
                     VAVIVMGLVLYAG"
     gene            972..1334
                     /locus_tag="OQQ75_002883"
     CDS             972..1334
                     /locus_tag="OQQ75_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HCS1977133.1"
                     /translation="MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWH
                     QAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAI
                     LFAVTHIHQLIVFIERVA"
     gene            1331..1828
                     /locus_tag="OQQ75_002884"
     CDS             1331..1828
                     /locus_tag="OQQ75_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCS1977134.1"
                     /translation="MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLI
                     PYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGGENP
                     QPRRDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMEL
                     MTMLR"
     gene            complement(1836..3020)
                     /gene="emrD"
                     /locus_tag="OQQ75_002885"
     CDS             complement(1836..3020)
                     /gene="emrD"
                     /locus_tag="OQQ75_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418129.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter EmrD"
                     /protein_id="HCS1977135.1"
                     /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA
                     VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA
                     SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN
                     WRACYLFLLVLCVGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIG
                     GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ
                     SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFLFLAGT
                     AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPLATLMSHQGQ
                     PV"
     gene            complement(3439..3528)
                     /gene="tisB"
                     /locus_tag="OQQ75_002886"
     CDS             complement(3439..3528)
                     /gene="tisB"
                     /locus_tag="OQQ75_002886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin TisB"
                     /protein_id="HCS1977136.1"
                     /translation="MSLVDIAILILKLIVAALQLLDAVLKYLK"
     gene            4093..4191
                     /gene="ivbL"
                     /locus_tag="OQQ75_002887"
     CDS             4093..4191
                     /gene="ivbL"
                     /locus_tag="OQQ75_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilvB operon leader peptide IvbL"
                     /protein_id="HCS1977137.1"
                     /translation="MTTSMFNAKLLPTALSAAVVVVRVVVVVGNAP"
     gene            4297..5985
                     /gene="ilvB"
                     /locus_tag="OQQ75_002888"
     CDS             4297..5985
                     /gene="ilvB"
                     /locus_tag="OQQ75_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HCS1977138.1"
                     /translation="MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYD
                     ALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDS
                     IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQS
                     GRPGPVWIDIPKDVQTAVFEIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYL
                     GGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEA
                     DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL
                     IPQVEAQPRAEWHQLVADLQREFPCPIPKACDPLSHYGLINAVAACVDDNAIITTDVG
                     QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMN
                     IQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFG
                     LETCDLNNEADPQAALQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE"
     gene            5989..6279
                     /gene="ilvN"
                     /locus_tag="OQQ75_002889"
     CDS             5989..6279
                     /gene="ilvN"
                     /locus_tag="OQQ75_002889"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1977139.1"
                     /translation="MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI
                     QDSDKSHIWLLVNDDQRLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ"
     gene            6353..6943
                     /gene="uhpA"
                     /locus_tag="OQQ75_002890"
     CDS             6353..6943
                     /gene="uhpA"
                     /locus_tag="OQQ75_002890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator UhpA"
                     /protein_id="HCS1977140.1"
                     /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP
                     GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR
                     CSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
                     ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW"
     gene            6943..8445
                     /gene="uhpB"
                     /locus_tag="OQQ75_002891"
     CDS             6943..8445
                     /gene="uhpB"
                     /locus_tag="OQQ75_002891"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction histidine-protein
                     kinase/phosphatase UhpB"
                     /protein_id="HCS1977141.1"
                     /translation="MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFP
                     FGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISR
                     YRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWH
                     YLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALP
                     IIALAWHYGWQGALIATLMNAIALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRL
                     RELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA
                     ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRG
                     IVSHLEWRIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIE
                     DDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV"
     gene            8455..9774
                     /gene="uhpC"
                     /locus_tag="OQQ75_002892"
     CDS             8455..9774
                     /gene="uhpC"
                     /locus_tag="OQQ75_002892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418123.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter family glucose-6-phosphate
                     receptor UhpC"
                     /protein_id="HCS1977142.1"
                     /translation="MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYF
                     TRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL
                     IATGIINILFGFSTSLWAFAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWN
                     TAHNVGGALIPIVMAAAALHYGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVG
                     EWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLY
                     MSETLGVDLVTANTAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG
                     SLWLMPFASYVMQATCFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG
                     ASLAGWPLAKVLDTWHWSGFFVVISIAAGISALLLLPFLNAQTPREA"
     gene            9912..11303
                     /gene="uhpT"
                     /locus_tag="OQQ75_002893"
     CDS             9912..11303
                     /gene="uhpT"
                     /locus_tag="OQQ75_002893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HCS1977143.1"
                     /translation="MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYL
                     IRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML
                     ILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF
                     LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPE
                     SYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRI
                     GIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIAL
                     ALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG
                     TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERK
                     IRREKKIQQLTVA"
     gene            complement(11348..13114)
                     /gene="adeD"
                     /locus_tag="OQQ75_002894"
     CDS             complement(11348..13114)
                     /gene="adeD"
                     /locus_tag="OQQ75_002894"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HCS1977144.1"
                     /translation="MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLIN
                     GGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVT
                     FETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD
                     VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGL
                     GGKELNAYITAGIENCHESYQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNS
                     PQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLDL
                     LAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQP
                     VSASDFALQFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRL
                     APACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVYQVIQDGGGLCVVRNG
                     QVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPAL
                     KLTSQGLFDGEKFVFTTLEVTE"
     gene            13289..>13705
                     /gene="adeQ"
                     /locus_tag="OQQ75_002895"
                     /gene_synonym="yicO"
     CDS             13289..>13705
                     /gene="adeQ"
                     /locus_tag="OQQ75_002895"
                     /gene_synonym="yicO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeQ"
                     /protein_id="HCS1977145.1"
                     /translation="MNNDNTDYVSNESGMLSRLFKLPQHGTTVRTELIAGMTTFLTMV
                     YIVFVNPQILGAAQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFV
                     VVGAMGISWQTGMGAIFWGAVGLFLLTLFRIRYWMIS"
BASE COUNT         3067 a         3559 c         3820 g         3259 t
ORIGIN      
        1 tatccgcagg gactaccttc acaaagtcac aacgaccgtc agcaaaaacc acgcaatgat
       61 agtcattgag gatttgaagg tcagcaacat gtcaaagtca gcagcgggta cggtcagcct
      121 gccggggcgc aatgtccggg caaaatcagg tttaaaccgt tcgatactgg atcagggctg
      181 gtatgaaatg cgccgccagc ttgagtacaa gcagctctgg agtggcggtc aggtgcttgc
      241 tgttccgcca gcgttgcgcg tgctgtggtc atacagcgaa agaaaatcgc ctgtcacaaa
      301 gtaaattcag atgccaggta tgtggatata cagcgaacgc cgatgtaaat ggcgctcgta
      361 acattttagc ggcggggcac gccgttcttg cctgtggaga gatggtgcag tcaggccgcc
      421 cgttgaagca ggaacccacc gaaatgattc aggcgacagc ctgaacgtag cagggatcct
      481 cgtccttcag ggcgtggagg atgtcaattt gcgctatgat acccatctga cctccttgta
      541 gcggatggca aaagcatatc aggaaacggg cggacgaaat tcttaaaaaa aaccgctaaa
      601 gatagagcgt tagtgaaatt gcaaaggagc aacaatgaaa atttcccgcc ttggagaagc
      661 gcccgattac cgcttctcgc tggctaatga gcgtactttt ctggcgtgga tccgtaccgc
      721 actaggattt ctggcggcgg gggttgggct tgatcaactt gcgccagatt tcgccacgcc
      781 cgtcattcgt gaactgctgg cgttgttgtt gtgtctgttt tccggcgggt tagcaatgta
      841 tggctacctg cgctggttac gcaatgaaaa agcgatgcgt ctgaaagagg acctgcccta
      901 caccaacagc ttattaatca ttagcttaat attgatggtc gtggcggtga tcgttatggg
      961 actggtgttg tatgccggat agccgcaaag ccagacgcat tgccgaccca ggactgcagc
     1021 cggagcgcac atcactggcg tggtttcgta ccatgctggg ctacggcgcg ttgatggcgt
     1081 tggctatcaa acacaactgg caccaggcgg gcatgttatt ctggatttcg attggcattc
     1141 tcgccatcgt ggcgctgatc ctctggcact acacccgtaa tcgcaattta atggatgtca
     1201 cgaatagcga tttttcccaa tttcacgtag tccgtgacaa atttttgatc tccctcgcgg
     1261 tgttatctct cgcaatactg tttgctgtaa cgcatataca tcaacttatc gtatttattg
     1321 agagagtcgc atgacaggaa gtcaggtcat tgatgctgaa gaggacaggc ataaactggt
     1381 tgtagagtac aaggatgctc tgcaacctgc cgatttttat cacaatttca aacagcgggg
     1441 catccgctcc gtacagctca ttccctatct tgaatttgat gaccggggcg atctgacggc
     1501 cgcttcggtg acagcagagc tgtgggggaa atttttaatt gccctgttcg agtgttgggt
     1561 gcgggcagat atcagtcgta tctcgattga gctttttgac gccaccttac aaaaatggtg
     1621 tggcggcgaa aacccgcaac cgcgccgtga ctgccaggcg tgcgactggc atcgcctgtg
     1681 cccgcacgct cggcaggaga cgccagacag cgtgctttgt gcgggctatc aggcgtttta
     1741 ttcttactcc gcaccgcata tgcgggtgat gcgtgatctg ataaagcagc atcgttctcc
     1801 catggagctg atgacgatgc tgcggtgacg tgcgcttaaa cgggctgccc ctgatgcgac
     1861 atcagcgtcg ccagcggcag ccagcacagc acgatcaaca atcccattaa ggtcatcaat
     1921 aaccccaggc taccctgacc ggtttgcggc aacatcgcag agagcgacgc cagcacgccg
     1981 gaaccaatgt tttgcagacc gccgaccagc gcgccagccg tgcccgccag gaagaggaac
     2041 ggctccatcg cgccgctggt cgccagcgga aacagcatcc cggcaccgaa aaagaacagc
     2101 gcggcgggaa cgagcagcgt ccagacattc atcacgccaa accagtcggg gatccacatc
     2161 agcaagccag ccagcaggca gcagataacc gactgccaca ttaacgtgga gaagcgttta
     2221 ttgggacgtc cggcaaacca tgcgccaaaa aacgctgccg gaatcggcag aataaacaaa
     2281 atactgaccg tcatactgct cagccctaac accgcgccca tcagcacgcc ggagcaggct
     2341 tcaaaggcgg caatcccggc cagaccgcca atcagcatca gcaaataaca gttaaaaccg
     2401 ctgttaccga aaagcgtttt ataactggta agcaggcgcg tgcgcggtgc atcgaccgga
     2461 cgcgtttccg gcatccagcg ggccatactg aaggtcacac caacacaaag aaccaacaaa
     2521 aagagataac aggcgcgcca gttccacatc gtatccagca gaccgccgat tagcggtgcg
     2581 agcaacggac tgacgagaat ccccatgttt aacaggctgt tagcatggcg caactgtgtc
     2641 cgttcatata aatctcgcgg caaagtacgc gccattacgc cgccaacgcc ggtgcccatc
     2701 ccctgcatcg cgctggcggc aatcaatacc gtcaaactgg aggtcgtgac cgcgaccagc
     2761 gttgccagca taaaaatgga cattccgacg aggatcaccg gtcggcgacc cacacggtcg
     2821 gaaatcgggc cataaaacag ctgtgagaca ccgtaagtca gcagataagc gcccattacg
     2881 ctctgcaccg ccccttcacg gacgttgaga tcgcgcgcca tatcggcaat agctggaata
     2941 taaatggttt gcgccatctg accgacggcc acgagtaata ccaacatcaa taacaaattg
     3001 acgtttcttt gccttttcat tatcacggat gcttttataa aaataattag aataagtcac
     3061 tacgcattcc cataaatgcg ggagaggaat ctatcacatt gatgaatgtt agccagatat
     3121 acgccaggaa tggggaattg tttagcggca gaatatgtaa acaaaagcgg caataaatgt
     3181 tgccgggagg gattacgtgc gaactgtaac cctctcccca aaggggcgag ggggaaacca
     3241 ccgttccctt tcagaaaatg agctaaacat tgcacgggac ggtcccctcg cccctttggg
     3301 gagagggcta gggtgagggg cacaggcagc gcaggtgcaa acattctgct ggtagaagaa
     3361 gcccccaact ccaacccgca cgctaaatat aaaaggggag cggttacccg ctcccctttg
     3421 gtgcgacttg aatctgaatt acttcaggta tttcagaaca gcatcaagca gttgcagtgc
     3481 tgcaacaatg agtttgagga taagaatggc gatatccacc aggctcatac gcgtctcctg
     3541 tggttcagga gcactgccag ctgacgtacc tttccgctgc ctgttgccag ctgttgtgca
     3601 cgcggtatct caaggagaaa cgttgtgctt gttgacataa cacagtgtgc tcacgcgggg
     3661 ttaaggcgct gacggcacca cccgtttcag ccaggactta gtgcgccggg taacgatgcg
     3721 gcccccgcat aatacattgc gtacagtgat attatagaag tttactgtat aaataaacag
     3781 tgatatttgg acaaaacgca aactgtgatc gatactcaac tatgccctaa atacgtcaaa
     3841 attcgtgccg aaattgcgcg ttctgcgcgg aacacgtata ctttcagtgt tgacataata
     3901 cagtgtgctt tgcggttacc agctgcaggc ggctgatgaa acctcgctcc ggcggggttt
     3961 tttgttacct gcaattcagt acaaaacgtg atcagcccct caattttccc ttgctgaaaa
     4021 attttccatt gtctcccctg taaagctgtg cttgtataaa tattgttaaa cacaaaacca
     4081 acaaggtccc caatgactac ttccatgttc aacgcaaaac tactaccaac tgcgctatcc
     4141 gccgcagtgg tcgtcgtgcg tgtggtggtg gtcgtcggca atgcgccgta gggactggaa
     4201 caacacacga ttccaaaacc ccgccggcgc aaaccgggcg gggtttttcg tttaagcacc
     4261 tcccggaaag tcggcccaga agaaaaggac tggagcatgg caagttcggg cacaacatcg
     4321 acgcgtaagc gctttaccgg cgcagaattt atcgttcatt tcctggaaca gcagggcatt
     4381 aagattgtga cgggcattcc gggcggttct atcctgcctg tttacgatgc cttaagccaa
     4441 agcacgcaaa tccgccatat tctggcccgt catgaacagg gcgcgggatt tatcgctcag
     4501 gggatggcgc gcaccgacgg taaaccggcg gtctgtatgg cctgtagcgg accgggtgcg
     4561 actaacctgg tgaccgccat tgccgatgcg cggctggact ccatcccgct gatttgcatc
     4621 accggtcagg ttcccgcctc gatgatcggc accgacgcct tccaggaagt ggacacctac
     4681 ggcatctcta tccccatcac caaacacaac tatctggtca gacatatcga agaactcccg
     4741 caggtcatga gcgatgcctt ccgcattgcg caatcaggcc gcccaggccc ggtgtggata
     4801 gacattccta aggatgtgca aacggcagtt tttgagattg aaacacagcc cgctatggca
     4861 gaaaaagccg ccgcccccgc ctttagtgaa gaaagcattc gtgacgcagc ggcgatgatt
     4921 aacgctgcca aacgcccggt gctttatctg ggcggcggtg tgatcaatgc gcccgcacgg
     4981 gtgcgtgaac tggcggagaa agcgcaactg cctaccacca tgactttaat ggcgctgggc
     5041 atgttgccaa aagcgcatcc gttgtcgctg ggtatgctgg ggatgcacgg cgtgcgcagc
     5101 accaactata ttttgcagga ggcggatttg ttgatagtgc tcggtgcgcg ttttgatgac
     5161 cgggcgattg gcaaaaccga gcagttctgt ccgaatgcca aaattattca tgtcgatatc
     5221 gatcgcgcag agctgggtaa aatcaagcag ccgcatgtgg cgattcaggc ggatgttgat
     5281 gacgtgctgg cgcaattgat cccgcaggtg gaagcgcaac cgcgtgcaga gtggcaccag
     5341 ttggtagcgg atttgcagcg cgaattcccg tgtccaatcc cgaaagcgtg cgatccatta
     5401 agccattacg gcctgatcaa cgccgttgcc gcctgtgtcg atgacaatgc gattatcacc
     5461 accgatgtgg gtcagcatca gatgtggacc gcgcaagctt atccgctcaa tcgcccacgc
     5521 cagtggctga cctccggtgg gctgggcacg atgggttttg gcctgcctgc ggcgattggc
     5581 gcggcgctgg cgaacccgga tcgcaaagtg ttgtgtttct ccggcgacgg cagcctgatg
     5641 atgaatattc aggagatggc gaccgccagt gaaaatcagc tggatgtcaa aatcattctg
     5701 atgaacaacg aagcgctggg gctggtgcat cagcaacaga gtctgttcta cgagcaaggc
     5761 gtttttgccg ccacctatcc gggcaaaatc aactttatgc agattgccgc cggattcggc
     5821 ctcgaaacct gtgatttgaa taacgaagcc gatccgcagg ctgcattgca ggaaatcatc
     5881 aatcgccctg gcccggcgct gatccatgtg cgcattgatg ccgaagaaaa agtttacccg
     5941 atggtgccgc caggtgcggc gaatactgaa atggtggggg aataagccat gcaaaacaca
     6001 actcataaca acgtaattct ggagctcacc gttcgcaacc atccgggcgt aatgacccac
     6061 gtttgtggcc tttttgcccg ccgcgctttt aacgttgaag gcattctttg tctgccgatt
     6121 caggacagcg acaaaagcca tatctggcta ctggtcaatg acgaccagcg tctggagcag
     6181 atgataagcc aaatcgataa gctggaagat gttgtgaaag tgcagcgtaa tcagtccgat
     6241 ccgacgatgt ttaacaagat cgcggtgttt tttcagtaac cgctcaaggc ttgaacaaca
     6301 tcgcgcttat cgttaaggta agcgcgtttt ttttacccgc caggacaaga ccatgatcac
     6361 cgttgccctt atagacgatc acctcatcgt ccgctccggc tttgcgcagc tgctggggct
     6421 ggaacctgat ttgcaggtag ttgccgagtt tggttcgggg cgcgaggcgc tggcggggct
     6481 gccggggcgc ggtgtgcagg tgtgtatttg cgatatctcc atgcccgata tctccggtct
     6541 ggagctgcta agccagctgc cgaaaggtat ggcgacgatt atgctctccg ttcacgacag
     6601 tcctgcgctg gttgagcagg cgcttaacgc gggggcacgc ggctttcttt ccaaacgctg
     6661 tagcccggat gaactcattg ctgcggtgca tacggttgcc acgggcggct gttatctgac
     6721 gccggatatt gccattaaac tggcatccgg tcgtcaggac ccgctaacca aacgtgaacg
     6781 ccaggtggcg gaaaaactgg cgcaaggaat ggcggtgaaa gagattgccg ccgaactggg
     6841 cttgtcaccg aaaacggtac acgtccatcg cgccaatctg atggaaaaac tgggcgtcag
     6901 taacgacgta gagctggcgc gccgcatgtt tgatggctgg tgatgaagac gttgttctcc
     6961 cgcttaatta ccgttattgc ctgctttttt atcttctctg ccgcatggtt ttgcctgtgg
     7021 agtatcagcc tgcatctggt tgagcgccct gatatggcgg tgctgttatt tccgtttggt
     7081 ctgcgtctgg ggctaatgct gcaatgcccg cgcggatact ggccggtgct gctgggcgcg
     7141 gagtggctgc tgatttactg gctaacgcag gcggtcggtt taacccattt tccgttattg
     7201 atgatcggta gtttactgac gttactgccc gtagcgctga tctcgcgcta tcgccatcag
     7261 cgtgactggc gcaccttgct gttacagggg gcggcgttaa cggcggcggc gttgttgcag
     7321 tcgctgccct ggctttggca cggcaaagag tcgtggaatg cgctgttgct gactttaact
     7381 ggcggcctga cgctggcccc gatatgtctg gtgttctggc actatctcgc caataacacc
     7441 tggctgccgc tcggcccgtc actggtttct cagccaatca actggcgcgg gcgacatctg
     7501 gtctggtact tgctgctgtt tgttatcagt ctctggctcc agttgggatt gccggacgaa
     7561 ctgtcgcgct ttacgccatt ctgtctggcg ctgccgatta tcgcgctggc ctggcactat
     7621 ggttggcaag gggcgctgat tgcgacgttg atgaacgcca tcgcgctgat cgccagtcaa
     7681 acctggcgcg atcatccggt ggatttattg ctctcgctgc tggtgcaaag tctgacaggg
     7741 ttgttgcttg gcgctggcat ccagcggttg cgtgaactta accagtcgct gcaaaaggaa
     7801 ctggcgcgca atcagcatct ggctgaacgg ttgctggaaa ccgaagagag cgtgcgccgt
     7861 gatgtggcgc gtgagctgca tgatgatatc ggtcagacca tcactgctat tcgtactcag
     7921 gcgggcattg ttcagcggct ggcggcagat aacgccagcg tgaagcagag cgggcagctc
     7981 atcgaacaac tatcgctggg cgtttacgac gcggtgcgcc gtttgttggg tcggttacgt
     8041 ccgcgccagt tggatgatct caccctggag caggccatcc gctcactgat gcgggaaatg
     8101 gagctggaag ggcgcggtat tgtcagccat ctcgaatggc gaatcgatga atcagcgtta
     8161 agcgaaaacc agcgcgtaac gctgtttcgt gtctgccagg aagggctgaa caacattgtg
     8221 aaacatgctg atgccagcgc ggtcaccctg caaggctggc agcaggatga acggttgatg
     8281 ctggttattg aagacgatgg cagcggtttg ccgccgggtt ccgggcaaca aggttttggc
     8341 ctcaccggaa tgcgcgagcg cgtaacggcg ctgggtggca cattacacat ttcctgtctg
     8401 cacggcacgc gtgtcagcgt ttctctacct caacgctatg tctaaggttt gatgatgttg
     8461 ccgtttctga aagcgcctgc cgatgcgcca ttaatgactg ataaatatga aattgatgcc
     8521 cgctatcgct actggcgtcg gcatattctg ctgaccatct ggctgggtta cgcgctgttt
     8581 tacttcacgc ggaaaagttt taacgccgcc gtaccagaaa tccttgctaa cggcgtgctc
     8641 agccgtagcg atatcggcct gttagcgacc ctgttttaca ttacctatgg cgtgtcgaag
     8701 tttgtctccg gcattgtcag cgatcgctca aatgcccgtt attttatggg gatagggctt
     8761 atcgccacgg gcattatcaa cattctgttt ggcttctcga cgtcgctatg ggcgtttgca
     8821 gtactctggg tgctgaacgc ctttttccag ggctggggtt caccggtgtg tgcgcgtctg
     8881 ttaacggcct ggtattcacg taccgagcgc ggtggttggt gggcattatg gaacacggcg
     8941 cataacgtcg gcggcgcact cattcccatt gtgatggcag cggctgcact acattacggc
     9001 tggcgtgccg ggatgatgat tgctggttgt atggcgatcg tcgtgggaat ttttctctgc
     9061 tggcggctgc gcgatcgccc gcaggcgtta ggtttaccgg cggtcggtga atggcgacac
     9121 gacgcgctgg agatagctca acaacaagaa ggggcagggc tgacgcgtaa agagatcctc
     9181 accaaatatg tgttgctgaa tccgtatatc tggctgcttt cgttttgcta tgtgctggtc
     9241 tatgtggtcc gggcggcgat caacgactgg ggcaatttgt atatgtccga gacgctgggc
     9301 gtcgatctgg tcacggcgaa tacggcagtg acgatgtttg aactgggtgg atttatcggt
     9361 gcgctggtag cgggttgggg ctcggacaaa ttgtttaacg gcaaccgagg gccgatgaat
     9421 ttgattttcg ccgccggaat tttgctttca gtcggctccc tgtggctgat gccatttgcc
     9481 agctacgtga tgcaggcaac ctgcttcttc accattggtt tttttgtctt tggcccacag
     9541 atgttaatcg gtatggcggc ggcagagtgt tcccacaaag aggcggcagg ggcggcgacg
     9601 gggtttgtcg gcttgtttgc ttatctgggg gcgtcgcttg ctggttggcc gctggcgaaa
     9661 gtactcgata cctggcactg gagcggattt tttgtggtta tctctatcgc cgccgggatt
     9721 tccgcactgc tgttactgcc ctttttgaac gcccagacac cgcgcgaagc gtgatgcatc
     9781 tcaccttttc acttcatatc cggcaaaact aagaaatttt ccaggttttg cctggacgct
     9841 atctcaggcc tgatttgctg ctgattttta caatgcatgc ctcacgcagg tattcatttc
     9901 aggagtaacc catgctggct ttcctaaacc aggttcgcaa gccgaccctg gaccttccgc
     9961 tcgaagtgcg gcgcaaaatg tggttcaaac cgttcatgca atcctacctg gtggtcttta
    10021 tcggctacct gacgatgtac ctgattcgca agaactttaa catcgcgcag aacgatatga
    10081 tttcgaccta cgggttgagc atgacgcagc tggggatgat cggcctgggt ttctccatca
    10141 cttatggcgt gggtaaaacg ttggtttcat actacgccga cggcaaaaac accaaacaat
    10201 tcctgccgtt catgctgatc ctgtctgcca tttgtatgct gggcttcagt gccagtatgg
    10261 gcagcggctc ggttagcctg ttcctgatga ttgccttcta cgccttaagc ggctttttcc
    10321 agagtaccgg cggttcgtgc agttactcca ccatcaccaa atggacgccg cgtcgtaaac
    10381 gcgggacatt cctcggtttc tggaatattt ctcacaacct tggcggtgca ggcgcagcag
    10441 gtgtggcgct gttcggggca aattacctgt tcgatggcca tgtcatcggc atgtttatct
    10501 tcccgtcgat tatcgcgctg attgtcggtt ttatcggcct gcgttacggc agcgactccc
    10561 cagaatctta tggcctcggc aaagctgaag aactgttcgg cgaggagatc agcgaagagg
    10621 acaaagagac agaatctacc gatatgacca agtggcagat ctttgttgag tatgtgctga
    10681 aaaacaaagt gatctggctg ctgtgcttcg ccaacatttt cctctatgtg gtacgtattg
    10741 gtatcgacca gtggtcaacc gtatacgcgt tccaggaact gaaactctct aaagcggtgg
    10801 cgattcaggg ctttacgctg tttgaagctg gtgcgctggt cggtacgctg ctgtggggct
    10861 ggctctctga cctggcgaac ggtcgccgtg gcctggtggc ctgcatcgcg ctggcgctga
    10921 ttatcgccac gctcggtgtg tatcaacatg ccagcaacga atatatctat ctggcttctc
    10981 tctttgcgtt gggtttcctg gtctttggcc cgcaattgtt gattggtgtg gctgctgttg
    11041 gctttgtacc taaaaaagcg attggcgctg ccgatggtat taaaggcacc tttgcttacc
    11101 tgattggtga cagctttgcc aagttaggtc tgggaatgat tgccgatggg acgccggtat
    11161 tcggccttac cggctgggca ggcaccttcg ccgcacttga tatcgccgcg attggttgta
    11221 tctgcctgat ggcgatagtg gcggtgatgg aagaacgcaa aatccgccgc gagaaaaaaa
    11281 ttcagcagtt gacagtggca taaacgtaac tggtgacttt tgcccggcat gacgccgggc
    11341 ttttttatta ttccgtgact tccagcgtag tgaagacaaa cttctcgcca tcaaatagcc
    11401 cctgactggt tagtttgagc gcggggatca ctggcagaga aagaaacgcc atctgaataa
    11461 acggctcatc gggtaacgga ccgcattcac gggcggcggc tttcaaggcg tcaatttgtt
    11521 ccgccagcga ctgcgccgtg tcggtgctca tcaggccggc aatgggcaac ggcagatgac
    11581 tttggacctg gccgttacgt accacgcaca gcccgccgcc atcctgaatc acctgataga
    11641 ccgccagcgc catctcttcg gcactgcgac cgatcaccac aatattatgg ctgtcatggc
    11701 tgaccgtcgc agccagcgca ccttcattca gtccaaagcc gccaagcaaa ccacaagccg
    11761 gagccagccg ttgcccgtaa cgctcaagta cggcaataaa gcacacatca tcgcgatcaa
    11821 aaccattttc gctgtagacg ctggagtggg agtgcgtaat caattcgtta tggatgacgt
    11881 caatgacccg atagcgtttt ccgggcgtaa attgcagggc aaagtcgctg gcggaaactg
    11941 gctggcgggc aatggtgttg ccatatggcg gagcggattg tgccagtctc gccgactctt
    12001 ccgcctgtaa ggtttgcgca tcaatcggct cgcctttcac cagtacctgc tgcaccgtga
    12061 ccttacgcgc atcgctcaac aggacgatat cggcctgctt gccgggtgcc agtaagtcga
    12121 ggtgattcag accaaagtgg cgcgccgtcg accagctggc gacgcgatat gccacatgca
    12181 gcggcacatt gtgttgttcg atcaggcggc gaattaaggc atcgatgtgt ccttcatggg
    12241 cgatctccca cgggttacgg tcatcggtac agagcatgca ttgcgggctg ttaaattcgt
    12301 tgatcaacgg tgccagcgcg ttgagattgc gggcagcgga cccttcgcgg atcatcaacg
    12361 acatgccgag ttgtaatttc cggcgtcctt cttccagctg ataactttcg tggcagtttt
    12421 caatacccgc agtaatatag gcgttaagtt ctttaccacc caaacccggg cagtgaccgt
    12481 ccagcgtcag gtggcgaaat gcatccagtt tatcgagcag cgcattctgc ccgctaatta
    12541 cgccagggta gtccatcatt tctgcaaggc cggtaacctg cggatggtcc cgccaggcga
    12601 gcatctgttc aagggtaaaa ctggcaccgt taacatcgca gccttccagg gcgggtacgc
    12661 aagagctgac ctgtaagtac tggttttgcc ttgcctgttc ggcacagcgg gcaaaccagg
    12721 cgaatccggc ttctcccatc acgttgacga tttcatgagg gtcgcaaata acggtcgtca
    12781 ggccgcgcgg cagggtagcg gtttcaaagg tgaccggcgt catcatgctg gattcaatat
    12841 gcaggtgagc atcaataaac cctggcaccg ccgttgcgcc gcgagcatca atccgctgca
    12901 aagccggagc atcagcgtat tctgcgccaa caccggcaat gtaacgtcct ttaatcacaa
    12961 ttgggccgga aatttctccg ccattgatca ggtcgagaat agagacatta tcaataatat
    13021 aatcggcaac agcgtcgcca cgggaaacgg ctaacaattc ctggtattca gcccggctaa
    13081 tgtgatgaaa tttatggtta atggaattat tcatattttt ctcattttga ttttatcaat
    13141 ttgattatta tttatcataa agaaacgtcg cgagattatt aaagaatatc tattaatgtg
    13201 caattgaaat gtgataatta tcactgaacc gttgttgtca tttgttttac aaaagcaagg
    13261 gattaaatct cctccaatgg acaaaaaaat gaataatgac aataccgatt acgtgagtaa
    13321 tgaatcaggg atgctttcgc gattatttaa actacctcag catgggacca ccgtccgcac
    13381 agaattgatt gcggggatga ccactttttt aaccatggtg tacatcgttt ttgtgaaccc
    13441 gcaaatcctc ggcgcggcac aaatggaccc gaaagtggtg tttgttacca cctgtttgat
    13501 tgccggtatc ggcagtattg cgatggggat atttgctaac ttacccgtgg cgctggctcc
    13561 ggcaatgggg ctgaacgcct tctttgcctt cgtggtcgtg ggggcgatgg gcatctcctg
    13621 gcagaccggg atgggcgcaa tattctgggg cgcagttgga ctatttttgc tcacgctgtt
    13681 tcgtatccgg tactggatga tctcc
//
LOCUS       DAJVUP010000109        13586 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.109, whole genome shotgun sequence.
ACCESSION   DAJVUP010000109 DAJVUP010000000
VERSION     DAJVUP010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13586
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.109"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(242..1615)
                     /gene="cobA"
                     /locus_tag="OQQ75_002896"
     CDS             complement(242..1615)
                     /gene="cobA"
                     /locus_tag="OQQ75_002896"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1977146.1"
                     /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALA
                     FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDTLNQRVSEAAEARRIFCNV
                     VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQ
                     LRGRVKQQFTTMSERRRFWEKLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEV
                     VLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC
                     VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAAS
                     GCSAYSGIPLTHRDYAQSVRLITGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQ
                     KLIEHGMPGEMPVAIVENGTAVTQRVIDGTLTQLGELAQQMNSPSLIIIGRVVGLRDK
                     LNWFSNH"
     gene            complement(1634..2440)
                     /gene="nirC"
                     /locus_tag="OQQ75_002897"
     CDS             complement(1634..2440)
                     /gene="nirC"
                     /locus_tag="OQQ75_002897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite transporter NirC"
                     /protein_id="HCS1977147.1"
                     /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL
                     IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMW
                     AILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALC
                     NWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYT
                     LAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKSNRPVADKFNQTETAAG"
     gene            complement(2567..2893)
                     /gene="nirD"
                     /locus_tag="OQQ75_002898"
     CDS             complement(2567..2893)
                     /gene="nirD"
                     /locus_tag="OQQ75_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HCS1977148.1"
                     /translation="MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISN
                     IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDG
                     VVQLRG"
     gene            complement(2890..5433)
                     /gene="nirB"
                     /locus_tag="OQQ75_002899"
     CDS             complement(2890..5433)
                     /gene="nirB"
                     /locus_tag="OQQ75_002899"
                     /EC_number="1.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-nitrite reductase large subunit"
                     /protein_id="HCS1977149.1"
                     /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAY
                     DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFY
                     DKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEA
                     AGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV
                     EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDI
                     YAIGECASWNNRIFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG
                     DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE
                     LPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK
                     AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF
                     EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYS
                     VIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAG
                     FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT
                     RECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFY
                     IRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVVCEWTETV
                     NTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA"
     gene            complement(5695..6876)
                     /gene="tsgA"
                     /locus_tag="OQQ75_002900"
     CDS             complement(5695..6876)
                     /gene="tsgA"
                     /locus_tag="OQQ75_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter TsgA"
                     /protein_id="HCS1977150.1"
                     /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSS
                     MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSTA
                     MFILGVVSGITMSIGTFLITQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSI
                     EWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCY
                     ILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTV
                     LAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVL
                     TCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTS
                     H"
     gene            7147..7719
                     /gene="ppiA"
                     /locus_tag="OQQ75_002901"
                     /gene_synonym="rotA"
     CDS             7147..7719
                     /gene="ppiA"
                     /locus_tag="OQQ75_002901"
                     /gene_synonym="rotA"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase A"
                     /protein_id="HCS1977151.1"
                     /translation="MFKSTLAAMAAVFALSALSPAAMAAKGAPHVLLTTSAGNIELEL
                     DKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEAD
                     NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD
                     KISQVPTHDVGPYQNVPSKPVVILSAKVLP"
     gene            7824..7991
                     /locus_tag="OQQ75_002902"
     CDS             7824..7991
                     /locus_tag="OQQ75_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfG family protein"
                     /protein_id="HCS1977152.1"
                     /translation="MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALA
                     RLVELRRHYER"
     gene            7981..8583
                     /locus_tag="OQQ75_002903"
     CDS             7981..8583
                     /locus_tag="OQQ75_002903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenosine monophosphate-protein
                     transferase Fic"
                     /protein_id="HCS1977153.1"
                     /translation="MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRA
                     ATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNAL
                     MQDLEEEGYLVGLEKTKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL
                     SWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE"
     gene            8615..9178
                     /gene="pabA"
                     /locus_tag="OQQ75_002904"
     CDS             8615..9178
                     /gene="pabA"
                     /locus_tag="OQQ75_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 2"
                     /protein_id="HCS1977154.1"
                     /translation="MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKP
                     QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG
                     KTSPITHNGEGVFRGLANPLTVTRYHSLVVEPGSLPACFDVTAWSETREIMGIRHRQW
                     DLEGVQFHPESILSEQGHQLLANFLHL"
     gene            9264..10484
                     /gene="argD/dapC"
                     /locus_tag="OQQ75_002905"
     CDS             9264..10484
                     /gene="argD/dapC"
                     /locus_tag="OQQ75_002905"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     acetylornithine/succinyldiaminopimelate transaminase"
                     /protein_id="HCS1977155.1"
                     /translation="MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEY
                     VDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNELALRLGRKLIEATFAERV
                     VFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG
                     FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTASTPEFLQGLRELCDQ
                     HQALLVFDEVQCGMGRTGDLFAYMYYGVTPDILTSAKALGGGFPISAMLTTAEIASAF
                     HPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSD
                     IRGMGLLIGAELKPHYKGRARDFLYAGAEVGVMVLNAGPDVMRLAPSLVVEDADIDEG
                     MQRFAHAVAKVVGA"
     gene            complement(10551..12641)
                     /locus_tag="OQQ75_002906"
     CDS             complement(10551..12641)
                     /locus_tag="OQQ75_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312236.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1977156.1"
                     /translation="MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVP
                     ACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTA
                     ELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQP
                     LRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLS
                     AQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL
                     RVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPL
                     YARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWI
                     LMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASY
                     LILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQW
                     QSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEP
                     AFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQ
                     RLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPH
                     HGIWLSRKLRDSKA"
     gene            complement(12692..13324)
                     /gene="crp"
                     /locus_tag="OQQ75_002907"
     CDS             complement(12692..13324)
                     /gene="crp"
                     /locus_tag="OQQ75_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HCS1977157.1"
                     /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV
                     KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK
                     FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
                     PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR"
BASE COUNT         3289 a         3493 c         3557 g         3247 t
ORIGIN      
        1 ttccctatgt attatatatt aattaatatt cattgattat atgaatataa gcagactgct
       61 cgttaagaac gatacaggaa tatttaattg gcgtcagtga gcgaatgact taattttgta
      121 agtcgctgta acggtgaata taacccatta gcagataata tttattaagg ggttatgttt
      181 tatttgctga atatataaaa agagtcatta agaaggccag aattctctgg cccgggttaa
      241 attaatggtt ggagaaccag ttcagtttat cgcgcaggcc aacaacccga ccaataataa
      301 ttagcgatgg actgttcatt tgctgagcaa gttcaccgag ttgcgtgagc gtaccgtcaa
      361 tcacgcgctg cgtgactgcc gttccgtttt cgacaattgc caccggcatt tcgccaggca
      421 taccgtgttc aatcagcttt tgctgaatag tcgcggcctg attcaacccc atatagaaca
      481 ccagcgtctg tttttctgcc gccaggtttt cccagtccag ctcgccaccg gtttttaagt
      541 gtccggtaat taagcgtacg ctctgggcat aatcgcgatg cgtgagtgga atacccgaat
      601 aggcagagca accagaagct gcggtaatac ccggaaccac cgagaacgga atacccgcgt
      661 tgcacagtgt ttccagctct tcgccaccac ggccaaaaat aaacggatcg ccacctttca
      721 gccgcaccac gcgtttgcct ttttgcgctt cccgcagcag gatctggtta atctcttcct
      781 gcggtacaca gtggtatccc gcgcgtttgc cgacgaaaac gcgatcagca tcgcggcgta
      841 ccagattcat aatatcgtca gaaaccagac ggtcgtagac caccacatct gcctgctgaa
      901 tttgttgcag tcctttcagc gtcagcagcc cggcatcgcc cggacctgca ccaaccagca
      961 ccacttcacc gcgatggtcg agcggttcgt tgattaactg ttcggtcgtt tcagtaatgg
     1021 ctttctgatc gttgtttgcc agcgactgcg ccaggcggtc gttaacgaac aatttctccc
     1081 agaaacggcg acgctcactc atcgtggtga actgttgttt cactcgcccg cgtaattgcc
     1141 cggcatattt cgccacctgg cccagatgca acggcagcag tgattcgagt ttttcgcgca
     1201 acaggcgcgc cagaaccgga gaggtgccgc cagaggagac cgctaccatt agcggtgagc
     1261 ggtcaataat cgacggcata ataaagctgg cggctttcgg cgcatcgact acgttacaga
     1321 agatgcgacg agcttcagcg gcttcgctga cgcgctggtt aagcgtgtca tcatccgtcg
     1381 ctgcaatcgc cagccagcag gtgtcgagaa ggctttcatc aaatggccct tcgacgaggg
     1441 ttaacatgcc tgcatctgcc catgcggtga actgtggaat aaacgctaat gcattcaccg
     1501 ttaagcgagc gcctgcgtct aacagcaacc ttgctttgcg ttccgcgaca tcaccaccgc
     1561 cgacaatcag acagtcgcga tcgcgtaatt ggcaaaatat aggcaaatga tccacgtaaa
     1621 aaccccttag taattaaccg gcagccgttt cagtttgatt aaatttgtcc gcaaccggac
     1681 gattcgattt cggcgtagca taccaataac ccaatcccat gaatacggca cctgataaag
     1741 tattacccag cgtcacccac agcaggttat gaccaatacc cgccagcgtg taggcttcgc
     1801 tgtggttgcc gaaccaggag agcgcgaaca gcgtcatgtt agcgatagag tgctcgtagc
     1861 cggacgcgat aaatgccagc agacaccacc agatagcgat aaatttcgcc gccccttcag
     1921 tgcgcagcgc catccagatt gccaggcaaa ccagccagtt acacaatgca cctttgaaga
     1981 agagtaccat tgccggtgca gtggttttag ccagcgcgac ggagtgaacg atgctggtat
     2041 ctaccggcag caggctaccg ccgccccagc tatagagcat ggcaacgaag acggaaccga
     2101 ccaggttacc cagccaggtt tgcggcagga ttgcccacat ttgcccgtgg ctgatgctgc
     2161 ccgcttttac cccaaaggtg aggaacatgg tgtgtccggt gaacagttca gaaccggcga
     2221 taatcaccag cgttaaggcg ataccaaagg tcgcgcccat caccagcgga cgtacggacg
     2281 ggtcgagcaa attaccgagc gtgaaaatca agatgatccc aagacccaca tacgcgcccg
     2341 ccatggcgga gctgacccaa aagccgagcg ggttatttgc cgacaggcgt gcaatgcgcg
     2401 cagcgttagc cgcacactta ttaatagtgt ctgtaaacat ttgattatcc tttaaaaaat
     2461 aaaaacaaaa aaataaaaca aaaagtttaa aaaatgtcct gcaatatacc gaaggtaatt
     2521 acaggaccat gcaaaaaggg gaggcattgc gcctcccgtt aaaacattaa ccgcgcagct
     2581 gcaccacgcc gtctttcact cgtgcttcgt aatgtttgac ggaaaactgt tcgtcttcca
     2641 tgcacaagcc atcacttaag cgaaaacgct gttttttcag cgggctggcg acccacagct
     2701 cgccctggtg ttccgcaatc agcccgcgtg acagcacgct ggactcgaag aacggatcga
     2761 tgttgctgat cgcaaacacc tggtcgctgt gatacgggcg gaaaatcgcg acctgctcgt
     2821 cgcctaacag cgcgcagacg ccggtttcag gcaggatgtc atcgattttg cagatgtctt
     2881 tccactggct catgcgttgt cctccaccag agttaccggg atacgttcat acggcgttgc
     2941 cggacggtgc tgttcgcgct ctggcaccat ctgcacgttc gggtcacgct tgtcgctgtt
     3001 gatgaagtgt ttgaagcgag tctgcgcgga cggtgtattg accgtttcag tccactcaca
     3061 cactaccgct tcacgcaggc gcgccatctc ttcttccaga tgagcgttca gccccagttt
     3121 gtcgtcaatg atcaccgctt tcaggtaatc gatgccgcct tcgaggtttt ctaaccacgg
     3181 cgcggtacgc gtcagtttgt cggcggtacg gatgtagaac atcatgaagc ggtcgagata
     3241 tttgatcagc gtttcgcgat cgatatcagc tgccagcaga tccgcatgac gcggtttcat
     3301 gccgccgttg ccgcaaacat acaggttcca gcctttttca gtggcgataa tacccacgtc
     3361 tttaccctga gcttctgaac attcacgggt acagccggag acaccgaact tcattttgtg
     3421 cggcgtacgg atgcctttgt agcggttttc cagttccacg ccgaggccga cgctgtcgcc
     3481 aacgccgtag cggcaccagg tgctacccac gcaggttttc gccatacgca gtgctttcgc
     3541 ataggcatga ccggtttcga agccggcttc aatcagctga cgccagatct ctggcagatc
     3601 gtctttctgt gcgccaaaca tcgccaggcg ctgggaaccg gtgattttgg tgtagagatt
     3661 aaattcacgc gcgatacgac ccactgccat cagcccttcc ggggtgattt caccgcccgg
     3721 agaacgcggg atcaccgagt aggtcccgtc tttctggatg ttagcgagga agttgtcgtt
     3781 agaatcttgc agcggagtat gttctggctt cagaatgtat tcgttccagc aggaggccag
     3841 cagcgaaccg acggtcggtt tacaaacttc acaaccgtag cctttgccgt gtttcgccag
     3901 cagttcttcg aaggttttaa tgccttcaac gcggatcaaa tggaacagtt cctgacgcga
     3961 ataagcaaag tgttcgcaca ggttgttgtt aacttcgatg ccctgtttcg ccagttccgc
     4021 gttcagtacc tgagtgacca gcgggataca gccaccgcag ccagtacccg ctttggtttc
     4081 agctttcagc gccgcaactg tgtggcagcc tttgttgatg gcagcaatca gatcaccttt
     4141 agtgacgtcg aagcaggagc agatttgcgc gctgtccggc agtttatcaa caccgataga
     4201 cggcttaccg ctacccgagt gcgccggcag aatcagagaa tccgggtttt ccggcagctc
     4261 gatagcattc agcaccagtt gcagcaagtt accgtagtcg ctggtatcgc ccaccagtac
     4321 cgcaccgagc agggttttgt tgtcttcgct gacgatcagg cgtttgtaga tctctttgct
     4381 ttcgtcgagg taaacgtagc tacgtgcgcc aggcgtgcga ccatgagcat caccaatacc
     4441 gcctacgtcc acgcccagca gtttcagctt ggcgctaagg tcagcacctt caaaggcgtt
     4501 ttcgctaccg agaatatggt caacggcgac ctgcgccatt ttgtagccag gtgctaccag
     4561 accaaatata cggttgttcc agcttgcgca ttcaccgata gcgtagatat ccggatcgga
     4621 agtttggcag gaatcattaa tgacgatacc cccacgcgga gcaacgtcca gaccacactg
     4681 ggttgccagc ttatcgcgcg gacggatacc ggtagagaag acgataaagt cgacttccag
     4741 ttcgctgccg tcggcaaaac gcatggtttt acgtgcttcg acaccttcct gcacaatctc
     4801 aagggtgttt ttgctggtgt gaacgcgcac gcccatactt tcgattttgc gacgcagctg
     4861 ctcgccaccc atctgatcaa gctgttccgc catcagcata ggggcaaatt cgataacgtg
     4921 ggtttcaata cctaagtttt tcagcgcgcc agcggcttcc agacctaaca ggccgccacc
     4981 aacaacggca ccgcgtttgc tgcgacgggc gcaggattca atggcgttga ggtcttcaat
     5041 ggtgcgatag acaaagcagt cctgagtatc agaacctttg attggtggga tccacgggta
     5101 ggaaccggtt gccatgatca gcttgtcata aaaaacggta cgtccggcgc tggagtgaat
     5161 caccttctcc tgacggttga tggtgatagc gcgttcgccg accagaactt tgatgccgtg
     5221 tttctcgtag aagccttcgc gcaccagcga cagctcttcg gcggtgtggt gagagaagta
     5281 agacgagagg tgtacgcggt cataagcgat gcgcggttct tcacagaaaa cggtaatatc
     5341 aaagttggcc gcatcagatt tatcaagaag atcttcgata aagcgatggc cgaccatacc
     5401 gttaccgata attgcgagtc tgactttgct catttttgcc tcgatttctt ttctattacc
     5461 gcctacctta acgattcagc aaccccgctt attgatgtaa atcaaattca cctttatata
     5521 ccccttaagg ggtatattgc tgatttgtat aaattttctt aagtcacgga attgtctgac
     5581 atttcatgtt tgtgcaaaaa atagacaaaa tgaacgggtt tatagaaata gatgcacgta
     5641 gcggggttag agaggaaaag gccggacgac gatagtgccg tccggcatta gcaattaatg
     5701 agaggtcagg gtgttatgct gacggtgacg gctgacgaaa cctaacagga agcacatcac
     5761 aaagacgaca gcgtacagac cgtttgctgt aagcagtgcc gcctgcggac cgctatgttc
     5821 aacaatcggg ccggtaacca caaaggtcaa catagtaccg atggttccgc aggtcaggac
     5881 aaagttaacc agttttggcg acggtacttt ggtctgctgt gaacccaggg tgatgatggt
     5941 ggtatagatc gcgctggaga agaagcccag agcgagaatt gaccacgcca tatgtgctgg
     6001 tgttccggtg ttaaagacgt acatcagaat cgcagccaga ccagccagta cggtcagaat
     6061 gcgttgcaaa tcaaagaagc gaagaataaa gctgaacgcc cacatgccga ccatgtatga
     6121 catccagaag ttactcacca gcgtgcccgc gtcgttcagg ctcatgccca ggcctttggc
     6181 atactcaggc acccaggaga taaaacctaa ctgaccgagg atgtagcaca gcgccgcaac
     6241 agagagaaac agtacgccga tcccccactt ttctttctct accggagcat ccgtttttgg
     6301 tgcatgtttg cccagtgctg ggaactcaca gccgaaggtc agaataaaaa tagcgacata
     6361 caccagcccg atgcaggcat aaacccagta ccactcaatg ctgcgcgcca gtagaaacgc
     6421 ggcgatcatt gggaaaatca tcccagccat actgaagaag gagtcagtaa ataacaggcg
     6481 ggaaccgcgc tgacgccctt catacatttg tgttatcagg aatgtaccaa tcgacatagt
     6541 aatgccgctg accaccccga gaatgaacat cgccgtcgag aacagcgcca ggctgtggct
     6601 gaacatcaaa ccggcaaccg ccagcaccat caggagaaag ccaaaacgta actgcgtttt
     6661 caacgggacg atttccatca gccaggcgtt gaggaagata gagattaaaa tgccggcgtt
     6721 gaggaaggtg aaggtgttac tcatactgga aacaggcaga ttgaaataat cggcgatatt
     6781 tcccatcacc atcccggtga caataaccaa cgcaccagtc agtgcgtagg agagaaagct
     6841 aatccatgtg agcttgatgc gattgctgtt agtcatgatt ggcctgcgtt caaaaataaa
     6901 atggcatagc gggatatgcc gcgagcgggt gattttaggt gattttgtga tctgtttaaa
     6961 tgttttattg caatcggttg ctaaattgca ttttaagaag tgattttgat cacggaataa
     7021 aaagtgatcg tcaggttaca tatatttcag atacgtaaaa ttaggtaaag ggatggcctt
     7081 gttcttgaag gctatttaga atctcttcac ttgctttttt tctgctctgt ttgttaagga
     7141 aatctcatgt tcaaatcgac cctggcggcg atggctgctg ttttcgctct ttctgctctt
     7201 tctcccgcag caatggcagc gaaaggggcc ccgcacgtat tgttgacaac ctcagctggt
     7261 aacatcgaac tggagctgga taaacaaaaa gcgccagtgt ctgtgcaaaa ctttgtcgat
     7321 tatgtgaaca gcggttttta taacaacact acctttcacc gcgtcattcc tggctttatg
     7381 attcagggcg gcggtttcac cgagcagatg cagcagaaaa aaccaaaccc gccaatcaaa
     7441 aatgaagccg ataacggcct gcgcaacacg cgtggcacca tcgcgatggc gcgtaccgct
     7501 gacaaagata gcgccaccag ccagttcttt atcaacgttg ccgataacgc cttccttgac
     7561 catggtcagc gtgatttcgg ttacgcggta tttggtaaag tggtgaaagg catggacgtg
     7621 gcggataaga tttcccaggt gccgactcat gacgttggtc cgtaccagaa tgtgccgtca
     7681 aaaccggtag ttatcctttc cgctaaagtc ctgccgtaat gatttctcgc gcgggcaatc
     7741 ttgcccgcgc ttctgctctc ccggcgtaac ccggatttgc cgcttatact tgtggcaaat
     7801 ggacacgttc agggaggcat caagtgaaga aactcaccga taagcaaaag tcccgtctct
     7861 gggagcttca gcgtaatcgt aatttccagg ccagtcgccg tcttgaaggc gtcgagatgc
     7921 ctttagtcac tcttactgcc gcagaggctt tagcgcgcct tgtagagctg aggaggcact
     7981 atgagcgata aattcggcga agggcgcgat ccgtatcttt atccaggcct tgatatcatg
     8041 cgtaaccggc tgaacatccg ccagcaacaa cggctggaac aggccgctta cgaaatgacg
     8101 gcgctgcgtg ctgcgaccat tgagcttggt ccgctggtgc gcggtttacc gcatttgcga
     8161 actatccatc gccagctgta tcaggatatt ttcgactggg cagggcaact gcgtgaagtt
     8221 gatatttatc agggcgatac gccgttctgc cactttgctt atatagaaaa agagggcaat
     8281 gccctgatgc aggatctgga ggaagaaggt tatctggttg gcctggagaa aacgaagttc
     8341 gtcgagcggc tggcgcatta ctattgtgaa atcaacgtgc tgcatccctt ccgggtggga
     8401 agtggtctgg cacagcggat cttcttcgag caactggcga ttcatgccgg atatcaactg
     8461 agctggcagg gtatcgaaaa agaggcctgg aatcaggcaa atcagagtgg ggcaatgggg
     8521 gatctcaccg cactgcagat gatatttagc aaagtggtaa gcgaagccgg ggaatctgag
     8581 taaaatagcg cggttctttc gtaccggagc cgccatgatc ctgcttattg ataactacga
     8641 ttcttttacc tggaacctct accagtactt ttgtgaactg ggggcggatg tgctggttaa
     8701 gcgcaacgat gcgttgacgt tggcggatat cgacgccctt aaaccacaaa aaattgtcat
     8761 ctcacccggc ccctgtacgc cagatgaagc cgggatctcc cttgacgtta ttcgccacta
     8821 tgccgggcgc ttgccgattc ttggcgtctg cctcggtcat caggcaatgg cgcaggcatt
     8881 tggcggtaaa gttgtgcgcg ccgcaaaggt catgcacggc aaaacctcgc cgattacaca
     8941 taacggtgag ggcgtatttc gggggctggc aaatccactt accgtgacac gctaccattc
     9001 gctggtggtg gaacctggct cattaccagc gtgctttgac gtgacggcct ggagcgaaac
     9061 ccgcgagatt atggggattc gccatcgcca gtgggatctg gaaggtgtgc agttccatcc
     9121 agaaagtatt cttagcgaac aaggacatca actgctggct aatttcctgc atctctgatt
     9181 tccgattgcc attcagtgat tttttatgca tattttgtga ttataatttc atatttattt
     9241 atgcgtaaca gggtgatcat gagatggcaa ttgaacaaac agcaattaca cgcgcgactt
     9301 tcgatgaagt gatcctgccg atttatgctc cggcagagtt tattccggta aaaggtcagg
     9361 gcagccgaat ctgggatcag caaggcaagg agtatgtcga tttcgcgggt ggcattgcag
     9421 ttacggcgtt gggccattgc catcctgcgc tggtgaacgc gttaaaaacc cagggcgaaa
     9481 ctctgtggca tatcagtaac gttttcacca atgaactggc gctgcgtctt gggcgcaaac
     9541 tgattgaggc gacgtttgcc gaacgcgtgg tgtttatgaa ctccggcacg gaagctaacg
     9601 aaaccgcctt taaactggca cgccattacg cctgtgtgcg tcatagcccg ttcaaaacca
     9661 aaattattgc cttccataac gcttttcatg gtcgctcgct gtttaccgtt tcggtgggtg
     9721 ggcagccaaa atattccgac ggctttgggc cgaaaccggc agacatcatc cacgttccct
     9781 ttaacgatct ccatgcagtg aaagcggtga tggatgatca cacctgtgcg gtggtggttg
     9841 agccgatcca gggcgagggc ggtgtgacgg catcgacgcc agagtttttg cagggcttgc
     9901 gcgagctgtg cgatcaacat caggcattat tggtgtttga tgaagtgcag tgcgggatgg
     9961 ggcggactgg cgatttgttt gcttacatgt actacggtgt gacgccggat attctgactt
    10021 ctgcgaaagc gttaggcggc ggcttcccga ttagcgccat gctgaccacg gcggaaattg
    10081 cttctgcgtt tcatcctggt tctcacggtt ccacctacgg cggtaatcct ctggcctgtg
    10141 cagtagcggg cgcggcgttt gatatcatca atacccctga agtgctggaa ggcattcagg
    10201 cgaaacgcca gcgttttgtt gaccatttgc agaagatcga tcagcagtac gatgtgttta
    10261 gcgatattcg cggtatgggg ctgttaattg gcgcggagct gaaaccacac tacaaaggtc
    10321 gggcgcgtga tttcctgtat gcgggtgcag aggttggcgt aatggtgctg aatgccggac
    10381 cggatgtgat gcgtttagca ccgtcgctgg tggtggaaga tgcggatatc gatgaaggga
    10441 tgcaacgttt cgcccacgcg gtggcgaagg tggttggggc gtaaataaga cgcatcaggc
    10501 aaaatatgtc ggatgcggcg tgaatgcctt atccgatggt ttagcctgta ttacgccttc
    10561 gaatcccgca acttgcgact cagccaaatc ccgtgatgcg gtcgctgacg ccatgccatc
    10621 gacgaaatgg tgtgcatggt gttcagatga ccaataaccc gctgtaaatg ctgctccagc
    10681 gtacctgccg cgccttcgtg cggctgcatc tccggcgcat ccatgatatt ggcatcgcca
    10741 gaactacccg gttcgtcata ctccagtcgc tgctgacaac gctgaatggc gatttcacaa
    10801 gactgtaaat actcttgtgc cagttcaggt ggcaatgccc ggtgttcccg cgccagcgtg
    10861 gtcatggcat taatatgctc aacaataaac tggctgtgcg ttacccacag tttcatatct
    10921 gccagataat ggctgttaaa cgccggttcc tgcatcgcct gattcaatga gttatacaga
    10981 gtgttatgtg cctgatttac ccgcattcgc tgccaggcca gtggcgtagg ttgcggatcc
    11041 tcgctaagaa tcaagcgaat cgcttcctga taggcttcta aagcgtcatg ggcgttttta
    11101 cgcaataacc cgctctgcca ctgcggccac agccagacag taccgccgaa agcaattaaa
    11161 caaccaataa tggtatcgat aagacgcgga aggatgtatt gctcgccgtt caaccacaat
    11221 agttgcaggg tatacactgc ggtaatagta aaaccgaccg tcgcccagcc gtagtttttg
    11281 cgcaatatca ggtagctggc gagggtggta atcagcatca acgtcagggt gtaaccttcg
    11341 ggaattttaa agtgcagcgc cacgcccgca atgattaacc cgaccacggt tcccacggag
    11401 cgattcacaa tcctcagacg ggttgcgcca tagccatttt gtgtcaccag caataccgtc
    11461 atcaggatcc agtacgactt cggcagatgc agcgcggtgc ccatcaggct ggcaacgctt
    11521 aacatcacac tgagtcgtcc ggcattgcgt agcgccggag actttagtga cagataactt
    11581 ttcagcgcag gaagtaatgg cattcgccgc tgtttatcgg ccagtaagtc acgggcatag
    11641 agcggttttt gggtgcgcag cacgcgggcg atgcggctga aatgccagta gcagaattgc
    11701 ccaaccggat tatccggatg ctggcgggcg attttttcca gtgcgccaat ttgcttttcc
    11761 atcgtaaaac gcgttggcag gcgatggtaa agaatgtcat cagccagcac gcgcaggcga
    11821 gcggcgacgg tttgcgcatt ccagcggata acttcttccg catggctacg ctcgaccagc
    11881 ttttgcacct cttccggctg atgcaaactg accgaaatat gttcctgtaa atccagcgcc
    11941 tcctggaaaa tacgcagcat ccgcttgtag tcagtattat tttgcgcgga aagcatatgc
    12001 atttgctgat agcactgggt aattagatcg accgcttttt gctggcgcac cagcagcggc
    12061 ggcagcgctt tttcagggtc ggtgtgctgg gtaagcaggc tgtatttggc ttcacaataa
    12121 tctgccagtt cacggtacag cagacttagt gactcgcgca gcggttgttc gcgccagatc
    12181 cagaaccaaa accagttaaa caatccgtac cagagagtgc ccaacgcata gatgagcaac
    12241 ggttcccaga ccggcatgta tcccgccaga ctgagggtaa aaatggctgc cagcagcgat
    12301 gcgggaagca attttgcgtg caatggcccc aactcagcag tgacgccaag taccagcgtt
    12361 aatccggtca gcaaaaaggg caggggaaca tcttttgcca gtagcagctg tgtcagtaag
    12421 ctacaggtgg caaacagcga cgcaccaatg attaagcgtt tgaaaaaacg tttatgaggc
    12481 gtatcaaggc ccgcaatatt gcaacaggca ggaacgagag agaagagcag accgaatcgt
    12541 aattcgccaa gcattaaccc aacggccacg ggcaaacata gcaccagcgt ttgtcgaagt
    12601 gcatagttga tatcggggtg ataaatcagt ctgcgccaca tcgggggaaa caaaatggcg
    12661 cgctaccagg taacgcgcca ctccgacggg attaacgagt gccgtaaacg acgatggttt
    12721 taccgtgtgc ggagatcagg ttctgatctt caagcatctt cagaatgcgt cccacggttt
    12781 cacgagaaca gccgacaatc tgaccgattt cctgacgggt aattttgatt tgcataccgt
    12841 ccgggtgagt catagcgtct ggttgttttg ccagattcag cagagtctgt gcaatgcggc
    12901 ccgtcacgtc gaggaacgcc aggttgccca ctttctctga agtgacttgc agacgacgcg
    12961 ccatctgtgc agacagacgc atcagaatgt ccgggtttac ctgaatcaat tggcgaaatt
    13021 ttttgtacga aatttcagcc acttcacagg cggttttcgc acgtacccat gcgctacgtt
    13081 cctggccctc ttcaaacagg cccagttcgc caataaaatc accctgattc agataggaga
    13141 ggatcatttc tttaccctct tcgtctttga tcagcactgc cacagagcct ttaacgatgt
    13201 agtacagcgt ttccgctttt tcaccctggt gaataagcgt gctcttggat gggtacttat
    13261 gaatgtggca atgagacaag aaccattcga gagtcgggtc tgtttgcggt ttgccaagca
    13321 ccatgcgcgg ttatcctctg ttataagctt tctccagagc cagataacgc cgctgtctct
    13381 ggattgccga aatatgcttc ccgctacctg ggaaggggct atcaactgta ctgcacggta
    13441 atgtgacgtc ctttgcatac atgcagtaca tcaatgtatt actgtagcat cctgactgtt
    13501 ttagcatagc tttcgctttg tgtctcctgg tgtctcgctt cagcatgacc caggtcgcct
    13561 tccgttgcgc gatttggtta gtacgc
//
LOCUS       DAJVUP010000110        13508 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.110, whole genome shotgun sequence.
ACCESSION   DAJVUP010000110 DAJVUP010000000
VERSION     DAJVUP010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13508
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.110"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(183..929)
                     /gene="cutC"
                     /locus_tag="OQQ75_002908"
     CDS             complement(183..929)
                     /gene="cutC"
                     /locus_tag="OQQ75_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HCS1977158.1"
                     /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK
                     SVRQWVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD
                     MPRMEKIMAAAGPLAVTFHRAFDMCANPLNTLSNLAELGIARVLTSGQKSDALQGLSK
                     IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS
                     DAHADEYSRYVVDGAAVAEMKGIIERHQAK"
     gene            complement(943..1509)
                     /locus_tag="OQQ75_002909"
     CDS             complement(943..1509)
                     /locus_tag="OQQ75_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707763.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1977159.1"
                     /translation="MANWQSIDELQDIASDLPRFTHALDELSRRLGLDITPLTADHIS
                     LRCHQNVTAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPG
                     EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEYERLPNP
                     TLAVTDGKTTIKFHPWSIEEIVASEQSA"
     gene            1725..3458
                     /gene="argS"
                     /locus_tag="OQQ75_002910"
     CDS             1725..3458
                     /gene="argS"
                     /locus_tag="OQQ75_002910"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HCS1977160.1"
                     /translation="MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM
                     MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS
                     DRLGVSTPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG
                     DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ
                     SGDEYFREMWHKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG
                     LAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL
                     YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD
                     LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML
                     AFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREAQLAARLLQFEETLT
                     VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL
                     DTLGIETVERM"
     gene            3635..4123
                     /locus_tag="OQQ75_002911"
     CDS             3635..4123
                     /locus_tag="OQQ75_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HCS1977161.1"
                     /translation="MFKFLVLTLGIISCQAYAEDTVIVNDHDISAIKDCWQKNSDDDT
                     DINVIKSCLRQEYNLVDAQLNKAYGEAYRYIEQVPRTGVKKPDIEQLNLLKKSQRAWL
                     DFRDKECELILSNEDVQDLSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLT
                     RG"
     gene            complement(4243..4635)
                     /gene="flhe"
                     /locus_tag="OQQ75_002912"
     CDS             complement(4243..4635)
                     /gene="flhe"
                     /locus_tag="OQQ75_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlhE"
                     /protein_id="HCS1977162.1"
                     /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS
                     TRQPASGLMTLVAWRYQLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL
                     RFIWEVPGGGRLIPPLKVQRNEVIVNYR"
     gene            complement(4635..6713)
                     /gene="flhA"
                     /locus_tag="OQQ75_002913"
     CDS             complement(4635..6713)
                     /gene="flhA"
                     /locus_tag="OQQ75_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HCS1977163.1"
                     /translation="MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFIL
                     DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT
                     GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGM
                     PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI
                     NVVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD
                     VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGCEQKA
                     PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK
                     KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP
                     GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE
                     AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP
                     IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGL
                     ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH
                     IRMTATIGGK"
     gene            complement(6706..7809)
                     /gene="flhB"
                     /locus_tag="OQQ75_002914"
                     /pseudo
     CDS             complement(6706..7809)
                     /gene="flhB"
                     /locus_tag="OQQ75_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416394.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
     gene            complement(7892..8536)
                     /gene="cheZ"
                     /locus_tag="OQQ75_002915"
     CDS             complement(7892..8536)
                     /gene="cheZ"
                     /locus_tag="OQQ75_002915"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HCS1977164.1"
                     /translation="MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA
                     AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI
                     DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE
                     RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF"
     gene            complement(8547..8936)
                     /gene="cheY"
                     /locus_tag="OQQ75_002916"
     CDS             complement(8547..8936)
                     /gene="cheY"
                     /locus_tag="OQQ75_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HCS1977165.1"
                     /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN
                     KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG
                     ASGYVVKPFTAATLEEKLNKIFDKLDM"
     gene            complement(8951..9889)
                     /locus_tag="OQQ75_002917"
     CDS             complement(8951..9889)
                     /locus_tag="OQQ75_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HCS1977166.1"
                     /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL
                     IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI
                     DFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA
                     IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE
                     RVLPGHAYIAPGDRHMELARSGANYQIKIHDGPVGMLAMRQAGAWTLAQNEASCVVFG
                     MPREAINMGGVCEVVDLSQVSQQMLAKISAGQAIRI"
     gene            complement(9892..10704)
                     /gene="cheR"
                     /locus_tag="OQQ75_002918"
     CDS             complement(9892..10704)
                     /gene="cheR"
                     /locus_tag="OQQ75_002918"
                     /EC_number="2.1.1.80"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005063150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HCS1977167.1"
                     /translation="MRLPGCSRYSFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRS
                     LGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLADHARRRSGEYR
                     VWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNL
                     TPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMI
                     YFDQNTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRGQTVYALSKD"
     gene            complement(10843..11409)
                     /gene="flhC"
                     /locus_tag="OQQ75_002919"
     CDS             complement(10843..11409)
                     /gene="flhC"
                     /locus_tag="OQQ75_002919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhC"
                     /protein_id="HCS1977168.1"
                     /translation="MSEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELR
                     GSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC
                     PQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPS
                     RAVKRRKLSQNPADIIPQLLDEQRVQAV"
     gene            complement(11412..11762)
                     /gene="flhD"
                     /locus_tag="OQQ75_002920"
     CDS             complement(11412..11762)
                     /gene="flhD"
                     /locus_tag="OQQ75_002920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416406.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhD"
                     /protein_id="HCS1977169.1"
                     /translation="MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMAT
                     TLAALTLPQMVKLAETNQLVCHFRFDSHQTITQLTQDSRVNDLQQIHTGIMLSTRLLN
                     DVNQPEEALRKKRA"
     gene            12541..12969
                     /gene="uspC"
                     /locus_tag="OQQ75_002921"
     CDS             12541..12969
                     /gene="uspC"
                     /locus_tag="OQQ75_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspC"
                     /protein_id="HCS1977170.1"
                     /translation="MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPE
                     MYNQLAAPMLEDLRSVMQEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKHH
                     FDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTGD"
     gene            complement(12976..>13508)
                     /locus_tag="OQQ75_002922"
     CDS             complement(12976..>13508)
                     /locus_tag="OQQ75_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HCS1977171.1"
                     /translation="TSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR
                     KLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALI
                     VNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRS
                     AESQQRDKVATFPKLA"
BASE COUNT         3447 a         3599 c         3197 g         3265 t
ORIGIN      
        1 taattaatgt gaatatataa aatattttta gcacaacgct atgttcactg tcacccgctc
       61 aacagatcac ggttatcgta cgttttttat actgctcagg gataaaaaaa ggcccctgtc
      121 gaaattgcag gggcctggta cgagcaagca tcatattggg cgacatgatg caacggtaaa
      181 aatcatttgg cctgatggcg ttcaatgatt cctttcattt cagcaaccgc cgccccgtct
      241 acgacataac gcgaatactc gtccgcgtgt gcatctgatg acatggacaa tccttgatta
      301 cgataacgca tcggtgaagc ttgccacgct cccgcggagc tatggacttc cagcactccg
      361 gcatcgagga agtggtgcag gttttctgca cggactcctg ctccggccat aatgattgga
      421 gcatcacgat gggcaataag ttccataatt tttgataaac cttgcagtgc atctgatttt
      481 tgccctgatg tcagcacccg ggcgatgccc aattccgcaa gattactgag tgtatttaaa
      541 gggttagcgc acatatcgaa ggcgcgatga aaagtcactg ccagcggacc ggcagcagcc
      601 attatttttt ccattcgtgg catatcgaca ttcccgtcaa catcgagcac gcccgtcacc
      661 agtccaggaa aacctaattc gcggactgtg cgcacatcct caagaatggc ggcaaactca
      721 ccgtcgctgt agcaaaaatc accaccgcgt gggcggataa tcggatgcac agggatcgtc
      781 acccactggc gcacggattt cagtacaccc aacgacggcg ttaagccccc ctcttttggg
      841 gctgcgcata attcaactct gtctgcgccg ttttgctgcg ccgttagtgc acattccatg
      901 ctgtaacagc aaatttccag taatgccatt tttactcctt aattacgccg actgctcgct
      961 ggcaacgatc tcttcaatgg accacggatg aaacttaata gttgttttgc catcggtgac
     1021 cgccagcgtc ggattcggta atcgctcata ctcacctttt ggcgaactgg ttttcactga
     1081 gatccccggt aggctgagtc cttcatcaga aagcaatgcc agcgcacggg cattcagcgt
     1141 ttctggatca cccggcagaa cgatttcaat atgttcccaa ccttcgtgtg ggtaacgttt
     1201 ttccccgggc cacggtagct ccacaatgga aaactgccag tgcgcaacct gtaccggttc
     1261 atgcaattta aacagacaaa tcggtctgcc attgatcata ttttctgaca aaagctcgcc
     1321 acactgttca aaaccgcgac gccagcgctc agcggtgacg ttttgatggc aacgcaaaga
     1381 aatgtgatcg gcagtcagcg gagtgatatc caaccccaga cggcgggaga gttcatctaa
     1441 tgcgtgggta aatcgcggta aatccgatgc aatatcctgc agctcgtcga tagattgcca
     1501 gttcgccata atcactcttc gtctttcagt aaaagcgtta atttaccctg ttgccctgcg
     1561 ccaaccaacc gctgatttca cgccgcttct gatgcaatag tgaaaacggc aatacgccac
     1621 gcgcacgttg ctgacgaaaa cagccatttg cagtatactc ccgccctaat ttctttaact
     1681 ggtgcgggca atttttgctc gcttcatcaa tgtaaggtat tccggtgaat attcaggctc
     1741 ttctctcaga aaaagtccgt caggccatga ttgcggcagg cgcgcctgcg gattgcgaac
     1801 cgcaggttcg tcagtcagca aaagttcagt tcggcgacta tcaggctaac ggcatgatgg
     1861 cagttgctaa aaaactgggt atggcaccgc gacaattagc agagcaggtg ctgactcatc
     1921 tggatcttaa cggtatcgcc agcaaagttg agatcgccgg tccaggcttt atcaacattt
     1981 tccttgatcc ggcattcctg gctgaacatg ttcagcaggc gctggcgtcc gatcgtctcg
     2041 gtgtttctac gccagaaaaa cagaccattg tggttgacta ctctgcgcca aacgtggcga
     2101 aagagatgca tgtcggtcac ctgcgctcta ccattattgg tgacgcagca gtgcgtactc
     2161 tggagttcct cggtcacaaa gtgattcgcg caaaccacgt cggcgactgg ggcactcagt
     2221 tcggtatgct gattgcatgg ctggaaaagc agcagcagga aaacgccggt gaaatggagc
     2281 tggctgacct tgaaggtttc taccgcgatg cgaaaaagca ttacgacgaa gatgaagagt
     2341 ttgccgagcg tgcacgtaac tacgtggtaa aactgcaaag cggtgacgaa tatttccgcg
     2401 agatgtggca caaactggtc gacatcacca tgacgcagaa ccagatcacc tacgatcgtc
     2461 tcaacgtgac gctgacccgt gatgacgtga tgggcgaaag cctctacaac ccaatgctgc
     2521 caggaattgt ggcggatctc aaagccaaag gtctggcagt agaaagcgaa ggggcgaccg
     2581 tcgtattcct tgatgagttt aaaaacaagg aaggcgaacc gatgggcgtg atcattcaga
     2641 agaaagatgg cggctatctc tacaccacca ctgatatcgc ctgtgcgaaa tatcgttatg
     2701 aaacactgca tgccgatcgc gtgctgtatt acatcgactc ccgtcagcat caacacctga
     2761 tgcaggcatg ggcgatcgtc cgtaaagcag gctatgtacc ggaatccgta ccgctggaac
     2821 accacatgtt cggcatgatg ctgggtaaag acggcaaacc gttcaaaacc cgcgcgggtg
     2881 gtacagtgaa actggccgat ctgctggatg aagccttgga acgtgcacgc cgtctggtgg
     2941 cagaaaagaa cccggatatg ccagctgacg agctggaaaa actggctaac gcggttggta
     3001 ttggagcggt gaaatatgcg gatctctcca aaaaccgcac cacggactac atcttcgact
     3061 gggacaacat gctggcgttt gagggtaata ccgcgccata catgcagtat gcttacacgc
     3121 gtgtattgtc cgtgttccgt aaggcagaaa ttaacgaaga gcaactggct gcagctccgg
     3181 taatcatccg tgaagatcgt gaagcgcaac tggcagctcg cctgctgcag tttgaagaaa
     3241 ccctcaccgt ggttgcccgt gaaggcacgc cgcatgtgat gtgtgcttac ctgtacgatc
     3301 tggctggtct gttctctggc ttctacgagc actgcccgat cctcagcgca gaaaacgaag
     3361 aagtgcgtaa cagccgtctg aaactggcac aactgacagc gaagacgcta aagctgggtc
     3421 tggatacgct gggtattgag acagtagagc gtatgtaatc gatttttcgt gagagtaaag
     3481 cctgatcagg gttacctgat caggcttttt tattgccatc taaatgtatt ctgaaaatgg
     3541 acatgccatt gttttctgac tgttggataa gaggccagaa gcgtaatatc cggccccagg
     3601 gaaacgataa cggttgaatt taaggaatac cgcagtgttt aaatttcttg tattaacatt
     3661 aggcattatc tcttgccagg cttacgcaga agatacggtt atagtaaacg accatgacat
     3721 ttcagccatc aaagattgtt ggcaaaaaaa ttcagatgat gatactgaca ttaacgtgat
     3781 caaatcatgc ctgcgacaag aatacaatct cgtcgatgcg caattaaata aagcctatgg
     3841 tgaagcttat cgttatatag aacaagtgcc acgcacaggt gtaaaaaaac ctgatatcga
     3901 acaacttaac ttgcttaaaa aatcacagcg agcctggctg gattttaggg acaaagaatg
     3961 tgaattaatc ctttcaaatg aggacgttca ggatttaagt gacccttatt ctgaatcaga
     4021 atggctctca tgtatgatca tacagaccaa tacgcgaact cgccagttgc agctataccg
     4081 taactctgaa gatttttatc caagcccttt gacaagagga taattcacat ctttttggca
     4141 tgttttgttg caagctattc ctgataaata attgcaacaa gacatcgagc ctttttcact
     4201 gagttattaa acatactcgc gagcgcgtaa tttttttgtc cttcagcgat aattcacaat
     4261 cacttcatta cgttgtacct ttagcggtgg aattaaccgc ccaccgcctg gcacttccca
     4321 gataaatcgc aacggttctg ctgccgctat accggaaaag gccacggtgg ttccgctctg
     4381 cccctctaat tcgacacaac gagattgcga acacaagcga acccgcagtc ctgaaggtgt
     4441 cgggccgata agctgataac gccacgctac cagcgtcatc aatcctgaag caggttgtcg
     4501 cgtagaaaga ggcgcagacg acatcgactc accgcgatga tttagcgtaa ttcctacact
     4561 acttgcctgc cacatcccct ccccggcggc ttgcaccagc agcggaaaca ataatattgc
     4621 taataaggtt ctcattattt gccgccaatt gtcgccgtca tgcggatatg tcggttatca
     4681 gacagttcca gattcgacag gaccactaac tgcggcaagc tgcggcgcag gaagcgagac
     4741 aataatggtc gcagcgcgtg gttcaccaac aatactggcg gcgcacccag catctcctga
     4801 cgggatagcg cttcctgagt ttgcgccagt aaacgatccg ccagccctgg ctccagtcct
     4861 cccccgccct gcagcgcctg tagtaacaaa cgttccagcg gtgtatcgag gccaataaca
     4921 tggacttcat ctttgccagg aaaccactgc tgggtaatcg cccgtcccaa cgccacgcgc
     4981 acgacggcgg ttaattcatg tggatcgctt tggatgggcg catgttccgc cagcgtttcg
     5041 agaatggtgc gcatatcgcg aatcggtact ttttcatcga ggagattttg cagcacttta
     5101 tgcagtgtgg tgagcgtgac gacgccagga acgagatctt ccgtcagctt tggcatctcc
     5161 tgggcgacgc gatccaacag ctgttgcgcc tcctgacgac caaacagctc tgcggcatgc
     5221 tggctaatga ggtggttaag atgcgttgct accaccgtgc tggcctcaac cactgtgtac
     5281 ccctgaatct gcgcctgttc ttttagcgca ctttcaatcc agatagcatt caggccaaat
     5341 gccggatcga cggtcgcctc accaggtaac gtcccggcag cggttccagg gttaatcgcc
     5401 aaccagcgcc ccggataagc atcaccactg ccaatctcca cgcctttcat caaaatgcga
     5461 tagcgggcag gttgcagatc catattgtcg cgaatgtgca ccactggcgg cagaaatccc
     5521 atctcctggg caaatttctt gcggatactg cgtatacggc ccaacaactc accatcctgc
     5581 tggaaatcga ccatcgggat cagtcgataa cccacttcca ttcccagaga atcttccagt
     5641 tgtacatcgt tccacgtcgc ttcgacaacg gtattattct ctgccatttt taccggtttg
     5701 ggttcggcag gcgctttttg ttcgcatccg cgtatccacc aggccagccc cagcaatccg
     5761 gcagtgaaca gcaaaaatac caggttcggc attccaggca ccaagccgag taaaccgagc
     5821 acggcggcgc ttaacaacat aacgcttggg ttactgaaaa gctgattcac catctgctcg
     5881 ccaacatcct gatcggtgct gacacgcgta acgatgaccc ccgcggcggt agaaatcacc
     5941 agcgccggaa tttgtgccac cagaccgtcg ccaatggtca atagcgtata actttccgcc
     6001 gcgtgtccca tgctcatgcc atgttgcagc acgccgacca gcaacccgcc gacaacgtta
     6061 atgaccatga tgaggatccc ggcgatggca tcgccgcgaa caaacttact tgccccgtcc
     6121 attgagccgt aaaaatcggc ttcctgagtc acttcggagc ggcgtttttt cgcctcatct
     6181 tcaccaatca atccagcgtt aaggtcggcg tcaatcgcca tctgcttacc cggcatacca
     6241 tcgagaacaa agcgcgcacc cacttctgcg atacgcccgg cacctttggt aatgaccata
     6301 aagttgatga tcacgagaat gacaaacacc acgataccta tagcgaaatt gccaccaacg
     6361 aggaagtgac cgaacgcttc gaccaccttc cctgccgccg ccgcgccggt atgcccttcc
     6421 atcaaaatga tacgggttga agccacgtta agtgccagac gcaacaacgt agtaaacaac
     6481 agaatggtcg gaaacgcagc aaactcaagc gtgcgctggg taaacatcgc caccagcaac
     6541 accatgatcg acaaggcaat attgaaggta aacaacaggt cgagtatgaa tgcgggcagt
     6601 ggcagcacca tcatcgacaa gatcaacagg atcaaaatcg gtccggcaag gatctgccat
     6661 tgtgtcgatt tcaggtttgc gggcaggcgc agcatcgcgg ccagattact catgggtcgg
     6721 tttctcgtta ataaaatcca gggcttccgg caccggaaga tgagtaggtt gtacagggcg
     6781 ctgtccacca gccagacgcc agcgtttcag ttgccagatc caggccagca cttccgccac
     6841 cgcggcgtac agttgacccg ggatttgttg accaatctcc gcatgtcgat acagcgctcg
     6901 cgccagcggc ggcgcttcaa gcgtcgggac gttattttca gcgccaattt cacgaatgcg
     6961 cagcgcgacc agccctgcac ctttagcgac cactttcggt gcgctcattt tgttttcgtc
     7021 atactgcaac gctaccgaat agtgggtcgg gttattgaca atgacatccg ctttcggcac
     7081 atcggccatc atccgacgcc gtgcggcagc tcgctgcatc tgacggatcc gtcctttaac
     7141 atgggggtcg ccttcgcttt gtttgaactc atcacgaata tcctgccgcg acattcgcag
     7201 ctttttcagg tggctgaaga tttggaaaaa gacgtcaaat cccaccattg gaatgacacc
     7261 aagcaccacc agcagtgcgc atagccctac caaatccatc gcattaccca tggcggtaat
     7321 cggagactcg gccagtaagc gcatcatctg cggccagtga tgccagagaa aaaaccccgt
     7381 cacgctgcca accaagatgg ttttcaaaat tgctttaagc aactccgcgc cagtctgtgc
     7441 cgagaacatc cgtttaatgc ccggtagcgg gttgagtttg gaaaacttcg gctgcaagga
     7501 ttttccgcta aataccagcc cccccagcat gaccggagaa atgagcgcta ccagcaccac
     7561 gccgctaatc agcggtagca gcgccagcat ggcttctctg atcagcagaa taatctgccc
     7621 gaggatcaga ttcgggtctt tgataatact gtgatcaaaa tgcagcccag cggagagcat
     7681 gcccgacaat cgacgggcca gcgacacacc gccgaaccag ataacacaca cgcccaccag
     7741 caaaatcagc agtgaggtca gttcacggga acgcgggatt tagggctttt gctgccacac
     7801 atcaagcata gtgtgcgttt gtcggatgcg gcgtcatcgc cttatcagac cgcctgatat
     7861 gacgtggtca cgccacatca ggcaatacaa atcaaaatcc aagactatcc aacaaatcgt
     7921 ccacctgatc ctgactggct accacaccgg ctttgctggt atcgacctga ggtccattaa
     7981 gcaaactctg gttttcacgt tttggacgcg actcctgttc cgggatgttt tccaacagca
     8041 ccatcagcaa ctggcgttcg atctcctgaa tgacatccat catccgctta ataacctgcc
     8101 cggtgagatc ctgaaaatcc tgcgccatca tgatttccag cagttgcgcg ttagtaaagc
     8161 tggtatgcgc gggtacatct gccagaaatt gtcgtgtatc tgttaccagt tcacgggcgt
     8221 cggcaaggtc aatcggatcg gcaaaccagt catcccaacg ttgggttaac gcttttgctg
     8281 atttctccat ttgatcctga tgcggttgtg acgcctcaac actgttcagc gcccgctccg
     8341 cagcctgggc ggtcatctgc acaacatagt acaaacgatc gcgcgcatcg gggatggctt
     8401 ccgccgcttc ggcaatggcc tgatccagcc ccagttcccg caaactgtcg cgcagcatac
     8461 gcgtcaggct gccgatgcgc gcaatgatat cgccagctga atgctcgtca gcaggtttga
     8521 ttgatggttg catcatagtc gcatcctcac atgtccagtt tatcaaagat tttgttgagt
     8581 ttttcctcca gcgtcgcggc ggtaaatggc ttcaccacat agccactggc ccccgcttgc
     8641 gccgcagcaa tgatgttctc tttcttcgct tctgcagtca ccattaacac tggcaatgcc
     8701 gacatcgcgc catccgcacg aattgttttc agcaattcca ggccatccat attgggcatg
     8761 ttccagtcgg agataacaaa tccataaccg cctgcctgca acttattgag agcgtcgacg
     8821 ccatcttccg cttcctcaac attattgaat cccagctctt tcagcaggtt acgcactatg
     8881 cgtcgcatgg tggaaaagtc atccacaacc aaaaatttaa gttctttatc cgccatttca
     8941 cactcctgat ttaaatacgt atcgcctgtc cggcactaat ttttgccaac atttgctggc
     9001 ttacctggct aagatcgacc acttcgcaga caccacccat attgatggcc tcgcgcggca
     9061 tgccgaacac cacgcaactt gcttcgtttt gcgcaagggt ccatgccccc gcctgacgca
     9121 tcgccaacat tcccaccggg ccgtcgtgaa ttttgatttg ataatttgcg ccactacgcg
     9181 ccagttccat atgccgatcg cccggcgcaa tataggcatg ccccggcaag acacgttctc
     9241 cgtcttcggc ttctttaacc ccgatctggc aaagcttatt aagtctgtcg gcaaaagagc
     9301 gggtgaaacc gggcggcata tgttgggtaa ttaacaatgc cgggctggaa agcggcaacg
     9361 gttgcagtac gtgacgaatt gcctcagttc cacccgttga agcaccaatc gcaatcagtt
     9421 tttcagaact caacaacgga cccgccttca gcgttgtcgg tgctgacaat ggcttatgtg
     9481 ctgcaaggct cgcctttgct gccgtacgca ccttttcagc aatcatttcg ctatacgcca
     9541 gcattccttc gcgaataccc agttgcggtt tggtgacaaa atctattgcc cccagctcca
     9601 gcgcgcgcag cgtgacttct gatcctttgc cggtcaagga agaaaccatc acaacgggca
     9661 ttggacgcaa acgcattaat ttttcgagga aatccagtcc gtccatccgc ggcatttcaa
     9721 catccagcgt cagcacatcg ggattgaatt tcttaatcaa gtcacgcgcg accagcggat
     9781 caggcgcggt cgccaccatt tccatgtcgc tatggctgtt gatgatttct gtcatgatct
     9841 ggcgcatcag tgccgaatca tcgacagata acaccctgat tttgctcatc gttaatcctt
     9901 acttagcgca tacaccgtct gaccacgcag cgtgaagcgg cgctcaaggt ggctaaagtt
     9961 ttcagagtga cccgcaaaca gcaatccgtc gggtttaagg agcggaacaa agcggcgcaa
    10021 aatctcctgc tgggtatttt gatcgaagta gatcatgacg ttacgacaga agatcgcatc
    10081 aaacggcccc ggcacggtgt actgtttcgc cagtagattc agcggggcaa aatcaacata
    10141 gttcgccagc tcctgacgca cgcgtaccag cccttcatgc ggtcccgtcc ctcgcatgaa
    10201 ataccgttgc agttgctgcg gcgtcaggtt tttcaactct tcatggcgat aaataccgct
    10261 tctggctttt tccagcactt cggtgtcgat atcactggca aacactttcc agcgtccggg
    10321 cgcggtgccc aatgtgtcag ccagcgtcat cgcaatgctg tacggctctt cgccggttga
    10381 agccgccgcg ctccatacgc gatactcgcc agaacggcga cgtgcgtgat ccgcgagcag
    10441 agggaaatga tgtgcctcac ggaaaaatgc cgtcagattc gtggtcagcg aattgataaa
    10501 cgcctgccac tcaccgctgt gctgattaga ttccagcaag ttcagataat gaccgaaatc
    10561 cgtcagtccc agcgaacgca aacgacgaac cagtcggttg taaaccatgt cgcgtttatg
    10621 atcggccagg acgatcccgg ctcgttgata gatcaattga cttatccgcc gaaaactgta
    10681 ccgagaacaa ccaggtaacc taataagata agcacgacat catccttcca ctgttgacca
    10741 tgacaggatg ttcagtcgtc aggcgttaac gcgcgattgg ggcaaaaaaa aagcagcggt
    10801 acgtcgttac cgctgctggc atgttgcgcc acaccgtatc agttaaacag cctgtactct
    10861 ctgttcatcc agcagttgtg ggataatatc ggcaggattc tgggaaagtt tacgtctttt
    10921 tactgcccgg gatggcggtt gacataagct gcaggcaaag ctgccaacag gctggtgagc
    10981 gtgggtaata aaattgccgc cgcagcagtt gcagctggaa agttgcagta atccactttc
    11041 aacaaaccgc accaatgtcc aggcacgggt taatgccagc agtggtcctt cttctgcttg
    11101 tgggcactgt tcaaggtata aacggtaggc tttgatcacc gcatcgacgc cattacacaa
    11161 acctgttttc agtaaaaact gccatgcatt acagaacatc gaagcatgaa cgttttgttc
    11221 ccaggtcata aaccagtcgg ttgagaatgg cagcatgcct ttcggcggtg ggcttccgcg
    11281 cagttcttta taaagtttta tcaggcgtcc gcgacttaac tgtgtttcgc tttccagcat
    11341 ctgcaaacga gcgcccaggg tgatcaattc aatatcccgc gcttcctgaa caatgctttt
    11401 ttcactcatg atcaggccct tttcttgcgc agcgcttctt caggctgatt aacatcattc
    11461 agcaagcgtg ttgagagcat gatgccggta tgaatttgct ggagatcgtt aacgcgggaa
    11521 tcttgcgtca actgagtaat cgtctggtgg ctgtcaaaac ggaagtgaca aaccagttga
    11581 ttggtttctg ccagcttaac catttgcgga agagtcagtg ccgctaacgt tgtcgccatt
    11641 tcttcattta tgccgagacg aaacatagcg gacgctttgt cctgaacaat caaacgctgt
    11701 gcaagtagta aatatgacaa gttgatgtca taaatgtgtt tcagcaactc ggaggtatgc
    11761 attattccca cccagaataa ccaactttat ttttatgcgg tttcaccgca ccccgtgatg
    11821 tcgccgggaa gccccggtaa aaaataatta gcattagaat agtgcgataa gctgcaataa
    11881 gcagaaccac ctttttggtt taatatgtcc ttacaaatag aaatgggtct ttacacttat
    11941 ctaagatttt tcctaaatcg acgcaactgt actcgtcact acacgcacat acaacggagg
    12001 ggggctgcga ttttcaataa tgtgtgatgc agatcacaca aaacactcaa ttacttaaca
    12061 taaatgtata agccatactt ttgttttggg tgtatttcaa tctgttaaaa agtttttcgc
    12121 tacgctagca agcaaaaatg aaactggaat aatcgaaatg ggatgttgcg cacagttaaa
    12181 ataactcacc gtaaataatc atctgctata aataatcact ttcatgcaat accagataag
    12241 ctatttttaa acagacactt accgcacaac aaactaatta aatacaaaga aaggcaacaa
    12301 tcaacttaat gttaatcaaa tgttttacat atattaacca cttgtttaat gcggagaatc
    12361 agtacactat tttcttataa ttacatttga aattatatga tcaccgggag tgattgatta
    12421 attgtcttta ctaataatca gactaatatt tacctgtttg accgagttgg gattgcgtcg
    12481 tttctccatt aggagtaaag ctttaatgtc acctgaagtt cacagaataa ggaacaggtt
    12541 atgagctata gcaatattct tgtcgctgtt gcggttacac cggaaagtca gcaactgctg
    12601 gcaaaagcgg tatctatcgc caggccagta aagggacaca tcagtttaat tactctcgct
    12661 tccgacccgg aaatgtacaa tcaattagcc gcgccgatgc ttgaagattt acgcagcgtg
    12721 atgcaagaag aaacgcaaag ctttcttgat aagttaattc aggatgcggg gtatcccgtt
    12781 gacaagacgt ttattgccta cggtgagtta agcgaacata ttctggaagt atgtcacaaa
    12841 catcatttcg atttggtgat ttgcggtaat cacaatcaca gtttcttttc gcgagcatcc
    12901 tgctcggcga aaagagtgat tgcctcaagt gaggtcgatg tgctgttagt tccacttacg
    12961 ggtgattaac cgctcctacg caagctttgg aaaggtagca actttatcgc gctgctggct
    13021 ttccgcgctt cgcggaacta tctgctttag gtcgctaatg aagcactcct gccagtggtt
    13081 aatatcgttt ttcacgataa cgtccagcat ttctgcatga cgggaaatac gttccgccag
    13141 cgacatagtc aatgcacgat ccagcgcagc tgcaacttcg tcacgatcgt aggggttaac
    13201 aattaacgcc gacgttaact cgtttgccgc tcccgcaaat tgcgaaagaa caagaacgcc
    13261 cgggttggct gggtcctgag cagcaacata ctcttttgct accaggttca tcccgtcacg
    13321 cagtggcgtc actaagccca cgtcagagta gcggaatatt ttcatcagta atttacggtc
    13381 aaaatgctga ttcaaataat aaagcggcgt ccagcctaat tgcccgtatt taccattaat
    13441 tcgtccagct tcattttcga gctgatgacg aatatcctga taggcttgca catcaccacg
    13501 cgacgttg
//
LOCUS       DAJVUP010000111        13480 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.111, whole genome shotgun sequence.
ACCESSION   DAJVUP010000111 DAJVUP010000000
VERSION     DAJVUP010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13480
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.111"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ75_002923"
     CDS             complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ75_002923"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HCS1977172.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
                     ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
                     DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM
                     EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
                     VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ
                     ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVD
                     GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGV
                     REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG
                     GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
                     DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
                     ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
                     AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
                     YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA
                     TGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
                     GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD
                     ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR
                     RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK"
     gene            complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ75_002924"
     CDS             complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ75_002924"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HCS1977173.1"
                     /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
                     DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
                     KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK
                     EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI
                     VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA
                     LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD
                     GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK"
     gene            complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="OQQ75_002925"
     CDS             complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="OQQ75_002925"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HCS1977174.1"
                     /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL
                     LGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG
                     TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH
                     RHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSRESHTGERVPGTIGFATVRAGDIVG
                     EHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL"
     gene            complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="OQQ75_002926"
     CDS             complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="OQQ75_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HCS1977175.1"
                     /translation="MHLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK
                     TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP
                     AFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTP
                     NAEFNIAADPEAAACVFRSGIEIVMSGLDVTNQAILTPDYLATLPELNRTGKMLHALF
                     SHYRSGSMQSGLRMHDLCAIAWLVRPELFTLKPCFVAVETQGEFTSGTTVVDIDGCLG
                     KPANVKVALDLDVKGFQQWVAEVLALAS"
     gene            complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="OQQ75_002927"
                     /gene_synonym="lytB"
     CDS             complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="OQQ75_002927"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HCS1977176.1"
                     /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
                     VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
                     HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK
                     LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL
                     VVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQ
                     NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD"
     gene            complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="OQQ75_002928"
     CDS             complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="OQQ75_002928"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1977177.1"
                     /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL
                     SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT
                     AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA"
     gene            complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="OQQ75_002929"
     CDS             complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="OQQ75_002929"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HCS1977178.1"
                     /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP
                     SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYA
                     LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSR
                     AKKQ"
     gene            complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="OQQ75_002930"
     CDS             complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="OQQ75_002930"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HCS1977179.1"
                     /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA
                     KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI
                     ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK
                     TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD
                     QDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD
                     LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT
                     APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA
                     LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQA
                     RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW
                     WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHFSVVDVRPEFAGHAADMYLEGSDQH
                     RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI
                     LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV
                     VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA
                     DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL
                     ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALG
                     DELRFVLLTSGATVADYHDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV
                     AEHAEICGRCVSNVAGDGEKRKFA"
     gene            complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="OQQ75_002931"
     CDS             complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="OQQ75_002931"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HCS1977180.1"
                     /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR
                     KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL
                     TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG
                     GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV
                     SPVKGVYVVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL
                     RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA"
     gene            complement(12685..12903)
                     /locus_tag="OQQ75_002932"
     CDS             complement(12685..12903)
                     /locus_tag="OQQ75_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2575 family protein"
                     /protein_id="HCS1977181.1"
                     /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGHFLPVICAMAMK
                     SHFFLISVLNRRLTLTAVQGILGRFSLF"
     gene            13006..13269
                     /gene="rpsT"
                     /locus_tag="OQQ75_002933"
     CDS             13006..13269
                     /gene="rpsT"
                     /locus_tag="OQQ75_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HCS1977182.1"
                     /translation="MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
                     AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
BASE COUNT         3147 a         3807 c         3400 g         3126 t
ORIGIN      
        1 caaaagattt acttaatggg caaaaaaaac ggtcctcatc agagaaccgt attacttatt
       61 cgatcaaatt agcggatgaa aaatatccgc catgacacgc tattatttga tctgcgcgtg
      121 catttcctgc accgaaatta ctttttcggt cgcgtcggca ttcagcgcca tcgcggtagc
      181 gaaaccaccg ttcagggtgg tgtcataatg cactttatat tgcagcgcac tgcgacggat
      241 cacgcgggag tcttcaatcg cgcgacggcc tgaagtggtg ttgatgatgt aggtatattc
      301 gccattcttg atgcggtcct gaatgtgcgg acggccttca tgcaccttgt tcaccagacg
      361 cggattaatg cccgcttcgc ccagcacaat cgccgtgccg tgggtcgcat ccagctcgaa
      421 gccctgtttc agcagttttg ccgccaggtc caccacgcgt tctttatcgc cttcgcgcac
      481 ggaaagcaac gcacgaccgt gtttcttcat ggtggagttg ctgcccagct gcgctttggc
      541 aaacgcttca gcgaaggtgc ggcccacgcc catcacttcc ccggtggagc gcatttctgg
      601 ccctaacagc gggtcaacac ccgggaattt attgaacggc agcaccactt ctttcaccga
      661 gtagtacggc gggataactt ctttggttac gccctgctca gccagcgatt tgccagccat
      721 cacacgcgcc gccacttttg ccagcggtac gccggtggct ttggagacga acggaacggt
      781 acgcgccgca cgcgggttaa cttcaatcag gtagacttcg ttgtttttca ccgcaaactg
      841 cacgttcatc agaccgcgca cctgcaattc gaaggccagt ttctgcacct gctggcgcat
      901 cacatcctga atttcctgac ttaaggtgta ggctggcaga gaacatgcgg agtcaccgga
      961 gtgcacgccc gcctgctcga tgtgctccat gatgccgcca atcagcacca tttcgccgtc
     1021 gcagatggca tccacgtcaa cttctaccgc gtcatcaagg aagtgatcca gcaacactgg
     1081 cgcatcgtta gacacgctga ccgccgtctg gaagtagcga cgcaggtcag cttcgtcata
     1141 gacgatttcc atcgcccgac cgccgagaac gtaagacgga cgtaccacca gcgggtagcc
     1201 aatctctttc gccttctcta ccgccatttc aatagcggta acggtggcgt tcgccggttg
     1261 tttcagtttc agacgctcaa ccgcatgctg gaagcgttca cggtcttctg cacggtcgat
     1321 agcatccggg ctggtgccga taaccggtac gccagcagct tccagcgcgc gcgccagttt
     1381 cagcggggtc tgaccgccgt actgaacgat aacgcctttc ggcttctcaa tacgcacgat
     1441 ttccagcaca tcttccagag ttaccggctc gaagtagagg cgatcggaag tgtcgtagtc
     1501 ggtggagacg gtttccgggt tacagttaac cataatggtt tcgtaaccgt cttcgcgcag
     1561 cgccagcgag gcgtgtacac agcagtagtc gaattcgata ccctgaccga tacggttcgg
     1621 gccgccgccg agaaccatga ttttttcacg gtcggtagac ggattcgctt cgcactcttc
     1681 ttcataagtg gagtacatgt aagcggtgtc ggtggcgaac tctgccgcac aggtatccac
     1741 gcgcttataa accgggtgca ggtcatactg gtcgcgcagc ttgcggattt ccgcttcgcg
     1801 cacgcccgcc agttttgcca gacgcgcatc ggcaaagcct ttgcgtttca gctggcgcag
     1861 gaattcagcg ttcaggccag tgatgcccac ttccgctact ttctcttcca gacgcaccag
     1921 ttcttcaatc tgtaccagga accagcggtc aatattggtc aggttgaaca cgccgtccac
     1981 agacaggccc gcacggaagg catcggcgat gtaccagata cgctctgcgc cagcatcttt
     2041 cagttcgcga cggattttgg ttaacgcttc cgggtcatcg aggctcactt tcgggtcgaa
     2101 tccagtcgca ccgacttcca ggccgcgcag cgctttttgc agggattcct gctgcgtgcg
     2161 accaatcgcc atcacttcgc caaccgattt catctgagtg gtcagacggt cgttagcacc
     2221 agcgaatttt tcgaagttga agcgaggaat tttagtaacc acatagtcga tggacggctc
     2281 gaaggaggcc ggagtacgtc cgccagtgat gtcgttcatc agttcgtcga gggtgtaacc
     2341 caccgccagt ttcgccgcca ctttagcaat cgggaaaccg gtcgctttcg acgccagcgc
     2401 cgaagaacgg gacacgcgtg ggttcatttc gataacaatc aggcgaccgt ttttcgggtt
     2461 caccgcaaac tggacattgg aaccaccggt ttcaacgccg atttcacgca gcaccgccat
     2521 cgaggcgtta cgcatgattt gatattcttt gtcggtcagc gtttgggctg gcgcgacagt
     2581 gatggagtca ccggtatgga tgcccatcgc atcaaagttt tcgatagagc agacgatgat
     2641 gcagttgtcg tttttatcac gcaccacttc catctcgtac tctttccagc cgatcagcga
     2701 ctcatcaatc agcagctctt tggttgggga gagatccaga ccgcgggcgc aaatttcttc
     2761 aaactcttcg cggttataag cgataccgcc gccgctaccg cccatggtaa aggatgggcg
     2821 aataatgcac gggaagccca cgtcagcggc aaccgccagc gcttcttcca tcgtgtgtgc
     2881 gataccggaa cgcgcggttt ccagaccaat tttcttcatc gctacgtcga aacgacggcg
     2941 gtcttctgct ttatcaatcg catcggcggt cgcaccaatc atagtcacgc cgaactcttc
     3001 caacacgccc tgacgctcca gctccagagc gcagttcagc gccgtctgac cgcccatcgt
     3061 tggcagcacc gcgtccgggc gctctttttc aataatcttg cgtactactt cccagtgaat
     3121 cggctcgatg taggtcgcat cggccatttc cgggtcggtc atgatggtcg ccgggttgga
     3181 gttcaccaga atgacgcggt aaccctcttc gcgcagggct ttacatgctt gcgcgccaga
     3241 gtagtcaaac tcacacgcct gaccgataac aatcgggccc gcacccagaa tcaggatact
     3301 ttttatatct gtacgttttg gcatggctct tttactcctg attacttagc ggttttacgg
     3361 tactgctcaa ttaactcgat aaagtggtcg aacaacggcg ctgcgtcgtg tggcccaggg
     3421 ctggcttccg ggtgaccctg gaagctgaac gccggtttat cagtgcgatg aatgccctgt
     3481 aacgtaccgt cgaacaggga tttatgcgtg acacgcaggt ttgcaggtaa tgttgcttca
     3541 tccaccgcaa aaccgtggtt ctgggcggtg atcatcacca cgtttttctc cacatcttta
     3601 accggatggt tgccgccgtg gtgaccaaat ttcattttga cagtcttcgc accgctcgcc
     3661 agcgccagca gctgatgacc gaggcagatg ccgaataccg gaatatcggt ttcgaggaat
     3721 ttctggatgg cggtaatggc gtaatcgcac ggggccgggt cgccaggacc gttggagagg
     3781 aagatgccgt ctggattcat tttcagcaca tcttccgcag aagtttgcgc cggaacgatg
     3841 gtcaggcgac agcctctatc caccagcatc cgcaggatgt tgcgcttggc accaaaatca
     3901 taagccacga cgtggaacgg cagctcgtct tcttttttcg cttctggcag gccgccggtc
     3961 aacgtccagc tcccttgtgt ccagctatag gcttctgcgg tggtcacttc ttttgccaga
     4021 tccatgccat tcagacctgg gaacgcgcgg gctttttcta acgccaacgc cgcatccggg
     4081 ttatcgcctg cgataatgca gccattctgt gcgcctttct cgcgcagtaa acgcgtcagc
     4141 ttacgggtat cgatatcggc aatcgccacg atgttatggc gcttcaggta agaagagagg
     4201 tcttcggtat tacggaagtt gctggcaatc agcggcaggt cgcgaatcac cagaccttgt
     4261 gcatgtacct gagaagattc ttcatcggcg tcattagtgc cgacattgcc aatatgggga
     4321 taagtaagag taacgatttg acgagaatag gaaggatcag tgaggatttc ttgataaccg
     4381 gtcattgaag tattgaaaac gacttcccca accgccgaac ctgttgcccc tatggcccga
     4441 ccgtgaaact gggttccgtc ttccagaacc aatagcgctg acttaatcaa aacaccctcc
     4501 agagaatatt cactcacttt atttgcatat taattcacaa tgatgacgta aatcaatgca
     4561 aatctgctta ccgacgaatt tctggcaaac ggcggcattc tggagatatg ggcgctaaaa
     4621 gtcaacttaa tggcgggatt ttttatatta ttttgtggct catgcatgtt ttacaggcat
     4681 taagcgacaa aaagatcata taacctgttc tggaaaacgc ttgcacagca agaagattgc
     4741 atgaaataaa agggagcagg gaaaagtgga ccaaatggtc aaattttaca ttaaaacaac
     4801 aaaaacagaa gacaaaacat gtaatttttg gcacttatag acaatttaaa aacataacac
     4861 taaaaataaa agggccaaaa ttaaagccct ttataatcaa taaattaaat gtgttatttt
     4921 tgcaccataa caaatatttt gtggttacaa actattgaga tcaagcacat ctcgcatatc
     4981 aaaaagacca ctttccttac cactcaacca caaagccgat cttaccgcgc cgttagcaaa
     5041 tgtcatgcgg ctggacgcct tatgggtgat ctccagacgc tcgccaatat cggcaaacat
     5101 cgcggtatgt tcgccaacga tgtcacctgc acgcacggtg gcaaaaccaa tggtgccagg
     5161 cacacgttca ccggtgtggc tttcacgact gtagaccgcg caatctttca gatctttatc
     5221 aagggcgtgg gcgatcgcct ctcccattgc cagtgcggtg cctgacggcg catcaacttt
     5281 atgtctatga tgtgcttcaa taatttcgat atcggtgtag tcacccatca ctttggctgc
     5341 tttctccagc agcttaagca tgacgttaac gccaacgcta aaattggcgg caaagacaat
     5401 cgcaatatcg gcggcagcgt cacgaatcgc ctgtttaccg gcttcgtcaa accccgtagt
     5461 gccgatcacc atccctttgc catgctggcg acaaaaagcg agatggttca gcgtaccttc
     5521 cggacgggta aaatcgataa acacatcaaa atcatctttt accgcatcga ggctgctttg
     5581 cacggtaacg cctgttttcc ctgcaccagc cagctcaccg gcgtcgctgc ccagtaaaga
     5641 agatccttcg cgctccagcg ccgcgcccag ctgcacgcct tctaatgcca gcgccgcctg
     5701 aatcaactgg cggcccatac gccccccggc tcccgcgatg gcaacgcgga tgtttgcatc
     5761 atgcatagct attctctttt gttaatttgc atagaccgtt ttcagagtaa ccagcgcatc
     5821 gctacgccgc cagccaaaaa cgctgataat tagaaattaa tgataaacag ggagggatat
     5881 cagtgaaagg catgagtcga tgaatgactg catgccgata acatgtgaca ggttacgacg
     5941 ccagagccag cacctcagcc acccactgct ggaagccttt cacatccaga tccaatgcca
     6001 cctttacatt ggctggtttg cccaggcaac cgtcgatatc aaccaccgtc gtgcctgagg
     6061 taaattcgcc ctgagtttcc actgccacaa aacacggttt gagagtgaac aattccgggc
     6121 gcaccagcca ggcaatagcg caaagatcgt gcatacgcag tccactttgc atactgccgc
     6181 tacggtagtg gctaaacagg gcgtggagca tttttccggt gcgattcaac tccggcaaag
     6241 tagcgagata gtcaggggtt aatattgcct gattggtgac atccagaccg ctcatgacga
     6301 tttcgatgcc gctacggaag acacaggcag ccgcttctgg atcggcagcg atattaaact
     6361 cggcgtttgg tgtgcagttg ccgcgaccag cagaaccgcc catgatcacc agacgacgaa
     6421 tatacggttt acattccggg cattgtgaaa gtaacagcgc aatattggtt aacgggccga
     6481 tggccaccag ggtaacgggc tctggtgcac gcatcagggc atcccgaatc gccagaaacg
     6541 ctggtatccc gagcggcttt cggttgtgct caacaaagtc gtagccagcc attcccgatt
     6601 cgccgtgcac agatgccgca tcacgcggtg cgcgtaccag cggcacagcg gctccctggg
     6661 cgagcggaat ctccgcattc cagaaatgca gcagttgcag ggcgttgcgg gtggttttct
     6721 caaccgagac attacccgcg acggtggtca tcagttgcag gtcgagttcg ggtgcaaaaa
     6781 tcgcggcggc aatggcgacg gcatcgtcaa tgccggggtc agtatcgagg aagataggta
     6841 aatgcatgtt ttctccataa aaaatgccgg taacaagacc ggcattttcg cataacttag
     6901 gctgctaatg acttaatcga cttcacgaat atcgacacgc agctctttcg gcacttcgaa
     6961 aacaatgttt tcttcacggc cttccagcgg aatggcttca ccaccgccca gctgctgcaa
     7021 acgtgccacc acattctgca ccagaatatc cggagccgat gcgcccgcag tcacgccgac
     7081 gcatttaacc tctttcaccc actcttcctg gatgtctttc gcatcgtcaa tcaaaaacgc
     7141 gcgtttgccc atacgctggg ccagctccgc cagacggttg gagttggagg agtttttcga
     7201 accgaccacc aacacaactt ccgcctgttc tgccagggcg cgtaccgctt cctgacggtt
     7261 agtcgtggcg tagcagatgt catctttgcg cggaccgaca attttcggga agcgtttacg
     7321 cagcgcgtcg atcacatcag acgtgtcatc caccgacagc gtggtctggg tcataaagga
     7381 gagcttctct tcgtttttga ccgtcagttt ccacacatcg tccggcgatt cgaccagata
     7441 cattccccct tccgggttac tgtactggcc cattgtccct tccacttccg ggtgcccggc
     7501 gtgaccgatg agaatagatt cttcgccacg gcgactggcg cgggcgactt ccatatgcac
     7561 tttggtcacc agcggacagg tcgcgtcaaa taccgtcaaa tcgcgacttt ttgcttcgtt
     7621 acgtaccgcc tgagaaacac cgtgtgcgga gaaaatcagg atcgcgccgt ccggtacttc
     7681 gctaatctgc tcaataaaga tagccccacg ctcacgcaag ctatcgacca catagcggtt
     7741 atgtaccact tcgtgacgga catatatcgg tgcgccgtaa atggccagcg cgttttcaac
     7801 aatgctgata gcgcggtcta ccccggcaca aaaaccacgc gggttggcca acaggatctg
     7861 catgttacgc ctccaatgcc ggatcgattt ccagcacttc aatatcaaaa tgaacggtct
     7921 gcccggccag aggatggttg aaatcaacgg taatggagtc gccgttaatt tcgcggatca
     7981 cgccaggcat ctcactgcca tccattgcgg taaaaagcat gattgcgcca atttctggct
     8041 cgcctgcatc cataaattca cggcgggaga agtactgaat caggtccggt gacggcacgc
     8101 caaacgccgc atctggctcc aacgagaagg tggttttatc gcccactttc agccccaaca
     8161 ggtgttgctc cagcccttca gaaagagaag catcacccag gcggaacagc gccggtttac
     8221 cgttgttgcg ggtagactcg gcggtggtgc catcgtcgag ttttagcgtg aagtgcacca
     8281 ggacggcgct attgctctgt acagattcag acatgcaggt ttgctcttat atttgaggat
     8341 ttttgccgga tgcggcgtaa acgccttatc cggcagggtt tattattgtt ttttcgctct
     8401 agaaggcaaa aaaccttcca gcacaatcag tgccgcaccg acacagatgg cagtatcggc
     8461 aaggttgaag gtggcgaagt gccagtcgcc gacgtagaag tcgatcatat cgacaacgaa
     8521 gccgtgccac aggcggtcga acaggttgcc cagcgcgccg ccaataatca gcgcgtaagc
     8581 gatattgttt agcttctgcg tggccttcga gcgatacatc atcactgcca ggatcacgct
     8641 aataccaatc gcaataccgg caaagaacca acgctgccag ccgccgctat cggcaaggaa
     8701 actaaacgcc gcgccatagt tacgcgcata atgcagatta agcgacggga acagcgggac
     8761 cgtatccccc agagcaaagt tctggaggat caggtatttg ctgcccagat cgataatcag
     8821 cacgactacc accagccaca gccagcgtag ccctgttgaa cagatcgatt gactcatcag
     8881 gcaaacttac gtttttcacc gtcaccggcg acgttgctga cacagcggcc gcagatttct
     8941 gcgtgttccg ccaccttgcc gacatcctgg gtgtagtgcc agcagcgtgg gcacttctca
     9001 ccttcggctt tactcaacgc gactttcagc cctttgagta cttcgctctg ctgagcatca
     9061 gcaggtgcgt cgtgatagtc tgcaacggta gcgccggagg tcaacaggac aaatcgtaat
     9121 tcatcgccca gcgcggtcag tttcgccgcc agttccggtt ctgcatacaa ggttactgcc
     9181 gcttccagcg agccccccac tttcttgtcg gcacgcgctt gctcaatgac tttgttcact
     9241 tcgccacgca ctttcaacag ctcgtcccag aacgcatcgt tcatcgcttc gctgtctgcc
     9301 aggccaaaca ggccttcgta ccactcaccg gtgaagacgt atttttcacg ttcgcccggc
     9361 aggtagcccc acacttcatc agcggtgaag gagaggattg gtgccatcca gcgcaccagc
     9421 gcttctgcga tgtgatacag cgcagtctgg cagctacgac gcgccacact gtccgctttg
     9481 gcggtgtact gacggtcttt gatgatgtcg aggtagaagg aacccatctc aacggagcag
     9541 aagcgcatca gacgctgtac cacttcgtgg aaatcgtatg cttcgtacgc cttgaggatg
     9601 tcttcctgtg ccgctttcgc acaacctacg gcccagcgat ccagtaccac catctcttcc
     9661 ggtttcacca tatcttttgc tggatcaaaa ccgttcaggt ttgccagcag gaagcgcgcg
     9721 gtgttacgga tacgacgata gctatcggca gcacgtttca ggatctcgtc agaaacggcc
     9781 atttcaccgg tgtagtcggt tgatgccacc cacagacgca gaatatccgc gcccagtttg
     9841 ttcatcacat cctgcggcga aacggtattg ccgatggatt tagacatctt gcggccctga
     9901 ccatccacgg taaagccgtg ggtcagtacc tgacgatacg gcgctttgcc tttcatcgcg
     9961 gtggagatca ttagggaaga catgaaccaa ccacggtgct ggtcagaacc ttccagatac
    10021 atgtccgctg cgtgaccggc aaattccgga cgcacgtcaa caacagaaaa gtgggtagat
    10081 ccggagtcaa accatacatc caatgtgtcc ggcactttca cgtactgatc agcttcatcg
    10141 ccgaggatct ctttcgcatc aagatcccac cacgcctgga tgccgtcaac ttcaacgcgt
    10201 tttgccactt cttccattag ttcgagagta cgcggatgca gctcttccgt gtctttgtgc
    10261 acgaacagtg acatcggtac gccccaggtg cgctgacggg agatacacca gtcaggacgg
    10321 ttagcaacca tcgactcgat acgcgcctgg ccccagtccg ggatccactg cacgcctttg
    10381 atctctttca gtgactgcgc acgcagacct ttctgatcca tgctgacgaa ccactgcggc
    10441 gtcgcgcgga agatgatcgg cgttttgtga cgccagcagc acggatagct gtgctgcatt
    10501 ttctcaacgt gcagcagcgc gcctttttcc tgcagcagcg caacgacgat gtcgttcgct
    10561 ttgaagacgt tcacgccatc cagcgtcgga taagtgcccg gcagataagt gccgtccggg
    10621 ccaaccgggt tagcggtttc caggccgtat ttctgaccga tcacatagtc gtccgggccg
    10681 tggccaggcg cggtgtgaac ggcaccggta ccggcatcca gggtaacgtg atcgccgagg
    10741 attgccggaa cgtcgaagcc cataaacgga tgggtaaagc gcagcaactc aagctccgca
    10801 ccttttaccg tgccgagaat ggtgtaatcg gtcacgccga tacgctgcat tacgctttca
    10861 accagatctt tcgccagaat cacggcctga ccgtcgatct gcaccagcgc atagtcgaaa
    10921 tcaggtgcaa tagagattgc gcggttcgca ggcagagtcc acggcgtagt ggtccagatc
    10981 accagcgaga ttgggccgtt aacgttgctt acggcaaatt ttgctttcag tgcatcctga
    11041 tcgaccgcct gaaaagcaac gtcgatggac ggagaagttt tgtcgtaata ctcaacttcc
    11101 gcttccgcca gcgcagaacg gcagtcaacg caccagtgta ccggcttcgc gcctttgtgc
    11161 aggtgaccgt tgccgatgat tttgcccagc gcgcggatga tgttggcttc agttttgaag
    11221 tccatggtca ggtacgggtg cgaccagtcg cccagcacgc ccagacggat aaagtctttg
    11281 cgttgaccgt caacctgggt cgccgcgtat tcgcggcact tggcgcggaa ctcggcggcg
    11341 gtgaatttct cacccggctt accgtattct tgctctactt tcagctcgat cggcagaccg
    11401 tggcagtccc agccaggcac atacggcgag tcataaccgg aaagcccttt ggacttcacg
    11461 ataatgtctt tcagaatctt gttaaccgag tgaccaatat gaatgctgcc attcgcataa
    11521 ggagggccat catgcagaat gaaggttttt ttgccttttt tagccgcacg gatgatgccg
    11581 tacagatcat catcagtcca acgcgccagc attcccggtt cgcgcttggc gagatcgcca
    11641 cgcatcggga accctgtttc cggcaaattc agggttgatt tatagtcact catcagattc
    11701 tcggttccgt gtttcggttt gattacataa caggcttaag ccggttttgt tagcccaaaa
    11761 aattcgcggg cggttaattc atcacgcgca atctgcgctt tcagttcgtc cagcgacgca
    11821 aatcgctgct cattgcgtat ttttttacgc agcactactt gtatatggcg accgtaaagg
    11881 tccattgcaa catctaacaa atgcacttcc agctgctggc gaataccggc aaccgttggg
    11941 cgtgttccga tgtttgccac gccgggtaac ggcttttcac cgaggcccag cacttctacc
    12001 acataaaccc ctttcaccgg ggaaacctga cggcgtagcg gtacattcgc cgtcgggaaa
    12061 cctatagtgc gccctaattc atcaccgtgg actacacgcc cggagatggc aaacgggtgc
    12121 cccagtaaac tttctgccag agccagattg tcatccgcca gcgcctgacg cacagcggtg
    12181 ctgctaatac gcacgccacc ttcgcaaaaa gtttgcgtac tagtgatatc gaagccgtat
    12241 tccatgccag ctttctgtaa taacaagaaa tcgccttcac gaccagcgcc aaagcggaaa
    12301 tcatccccta cggcaagaaa ttttacgcgc aaatgcttca ccagaagatc gctgatgaaa
    12361 ttttgcgcgg ttaacgccgc gaaacgcctg tcgaaacgca cgcacagcac gtaatcaacg
    12421 ccacactctg caaggtaacg cagtttttcc cgcagccggg tcagtcttgc cggggcttta
    12481 tcggtagcaa acagttccag tggttgaggt tcaaaaagca tcaccatcac cggtaagttg
    12541 cgcttgcgcc cttcttcctg caagccctgt aacagcgcgc gatgaccgcg atgcacgccg
    12601 tcgaaattac caatagtcag cacacaccct tcttgcgggg cctggctgag attatgtatg
    12661 ccgcgtatca gcttcatgtc tggctcaaaa cagtgaaaat cgtccgagta taccttgtac
    12721 agcggtcaag gttaaccggc gattgagtac cgaaatcaga aagaagtggc ttttcattgc
    12781 catggcgcaa atcacgggaa gaaagtgacc gcctgctgca atttttatcg cggaaaagct
    12841 gtattcacac cccgcaagct ggtagaatcc tgcgccatca ctacgtaacg agtgccggca
    12901 cattaacggc gcttatttgc acaaatccat tgacaaaaga aggctaaaag ggcatattcc
    12961 tcggcctttg aattgtccat atagaacaca tttgggagtt ggaccttggc taatatcaaa
    13021 tcagctaaga agcgcgccat tcagtctgaa aaggctcgta agcacaacgc aagccgtcgc
    13081 tctatgatgc gtactttcat caagaaagta tacgcagcta tcgaagctgg cgacaaagct
    13141 gctgcacaga aagcatttaa cgaaatgcaa ccgatcgtgg accgtcaggc tgctaaaggt
    13201 ctgatccaca aaaacaaagc tgcacgtcat aaggctaacc tgactgcaca gatcaacaaa
    13261 ctggcttaat cgccaatttg ctgaagcttt gtgaaaaagc ccgcgcaagc gggttttttt
    13321 atgcctgctg cttttatgat gcgtgagaga acacactacc ggttgccaga tagtcaaaag
    13381 atgctggctt ttgcagacac gccgttacac tttctgaact cttcgtggct taagaatcgt
    13441 agaaccatcg gctgatacat tctgaacaag aatatctact
//
LOCUS       DAJVUP010000112        13477 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.112, whole genome shotgun sequence.
ACCESSION   DAJVUP010000112 DAJVUP010000000
VERSION     DAJVUP010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13477
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.112"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..429
                     /locus_tag="OQQ75_002934"
     CDS             <1..429
                     /locus_tag="OQQ75_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977183.1"
                     /translation="AIAFKNIQAGDGKKFTLSSSNNSTKNATFNLWGASTRPVVAELG
                     NEAGWHFYSQRNTDNSVIFSVNGQIQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYE
                     KAGHAITGLRIIGEVDGDDEAIFRPIQKYINGTWYNVAQV"
     gene            398..961
                     /locus_tag="OQQ75_002935"
     CDS             398..961
                     /locus_tag="OQQ75_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000930007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1977184.1"
                     /translation="MAHGITSHRCKLCSILKNIKSGNPKTKEQYQLTKNFDVIWLWSE
                     DGKNWYEEVNNFQDDTIKIVYDENNIIVAITKDAPTLNPEGFSVVEIPDITANRRADD
                     SGKWMFKDGTVVKRIYTADEQQQQAESQKVALLSEAESVIQPLERAVRLNMAMDEERT
                     RLESWERYSVLVSRVDTANPEWPQKPE"
     gene            complement(990..1523)
                     /locus_tag="OQQ75_002936"
     CDS             complement(990..1523)
                     /locus_tag="OQQ75_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000972171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1977185.1"
                     /translation="MMHLKNITAGNPKTKEQYQLTKQFNIKWLYSDDGKNWYEEQKNF
                     QPDTLKMVYYHNGVIICIEKDVSAINPEGASVVELPDITANRRADISGKWLFKDGVVI
                     KRTYTEEEQRQQAENEKQSLLQLVRDKTQLWDSQLRLGIISDENKQKLTEWMLYAQKV
                     ESTDTSSLPVTFPEQPE"
     gene            2302..2901
                     /locus_tag="OQQ75_002937"
     CDS             2302..2901
                     /locus_tag="OQQ75_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000905087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1977186.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTKTDRPG
                     LKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGR
                     FFFHVMGALAEMERELIVERTLAGLAAARARGRTGGRRPKLTKEQHEQIARLIKNGHD
                     RKQLAIIYGIGTSTIYRYHPVGDIQTEETTGQTQENENR"
     gene            complement(2930..3418)
                     /locus_tag="OQQ75_002938"
     CDS             complement(2930..3418)
                     /locus_tag="OQQ75_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001761054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977187.1"
                     /translation="MMMIYGMFVFELRTLPHQQLQQNKSWRHVKNERVNRSASWQYIG
                     AGDDRIVLSGVLYPEITGGEVSLSLLTTQAYTGRPWPLIDGVGQIYGMYVLTETNTTR
                     SEFDRYGKAKKIEFSLTLERCDEDLRERLQSSSFSDMLSGFKDKVTSSLNSAASSVKG
                     LF"
     gene            complement(3431..6238)
                     /locus_tag="OQQ75_002939"
     CDS             complement(3431..6238)
                     /locus_tag="OQQ75_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000853438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1977188.1"
                     /translation="MKTLDIRVAFSAVDRLTRPAENARRLMGQFGDSIQRTQGAIKNL
                     ERQARSFERARDAVSKADAGIVKARRQLNALNQLQRTGTVLSEKQQKLMQQLSTRLER
                     LNESRTREIQKMRELGGELKRHGISLTGSDNTIQQAIRRTEQYNNQLERERQALARVT
                     RARERYSRAQETAGKLKTGGALAIGAAAAGGYAAGRFLQPAIGFGKEMSRVQALTRID
                     QNSPQFKALREQALKLGSETQFTAGDAASGQAFLAMAGFTPQAIQAALPGVLSMATAG
                     GMDLGETADIGSNILTQFGLSADQMDRVGDTLTAAFTRTNTDLRALGETMKYAGPVAG
                     KLGISLEQAAAMAGVLANMGIRGSDAGTAMRASLARLASPPKAAAEALKELGVSVSDA
                     GGKMRPMEDVLADLYKATRKYGEVDRVSFFKDIAGEEAFTSFMALVDAAGDGSLPKLR
                     KELEGARGEAERTAKVMANNLDGDLKSLSSAWEGLRIRIADLIDGPLRSVTQWLTRVV
                     SKVTALAQAHPALTRQLLIAGGALLAMTATVGSLSLAIGVLAGPLAKLRLGFSLLTGS
                     MNAVRVLPALWGMVTGSVSLLGGAIGALFSPVGLIVAALAGAAVLIWKYWDPIRAFFA
                     GVFSGIMERLTPLRETFERFGPVFDAIGSGISQVFNWFKSLLSPMESSKETLDKCTSA
                     GEIFGNVLGGALQLVLTPAKMLLDTLAWILEKLGVLPDEAERARKKIEDAQRAAILQD
                     KVALLQGDLAKINPPKPVENGNGTGGDNPKDNKPLTDSNTGTLRRLSKIADNTGKLVE
                     ETKKRIGPGDIVFKNLPRALAVRGEWQERKIAQVSKPAPAINITPVVPAPLPPALVPV
                     VAASSRPVAEAIRSPVASVPVTSRNREPVAFGFGGEIHVHLHNVVTQNPRELAKLVGE
                     MVRAEMERRARAGRGCFYDKD"
     gene            complement(6276..6380)
                     /locus_tag="OQQ75_002940"
     CDS             complement(6276..6380)
                     /locus_tag="OQQ75_002940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000333494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1977189.1"
                     /translation="MCFEHIEDLVADIAAIFNWSPAEIFMMTPGEVVS"
     gene            complement(6389..6763)
                     /locus_tag="OQQ75_002941"
     CDS             complement(6389..6763)
                     /locus_tag="OQQ75_002941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000651574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977190.1"
                     /translation="MKDIDTETRNNTVADNVTAVEDMAVERGVKLTRPIERGGEKITY
                     VEITGAIEQAGSLRGLSLSDVLNLKADTMFTLLPRVTSPRLDEVMIKKMSSRDFIQLC
                     AVAVNFMSEPDSGAKSVQETAA"
     gene            complement(6819..7329)
                     /locus_tag="OQQ75_002942"
                     /pseudo
     CDS             complement(6819..7329)
                     /locus_tag="OQQ75_002942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310671.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
     gene            complement(7329..8513)
                     /locus_tag="OQQ75_002943"
     CDS             complement(7329..8513)
                     /locus_tag="OQQ75_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HCS1977191.1"
                     /translation="MSETRFHGARVTENTDLVTAINDVDSSVIGIVATADDADAKLFP
                     LNKPTLLTRVNDVLGKCGTTGTLYRALKAIADQVSTKVIVVRVAEHKEEDGKTQDQLV
                     IGGSEDDGSYTGMYALLVAEQDESIGYRPRILAAPELDTEAVTKSLCVIADKLRAFVY
                     ASCHGCNTMAEAITYRQKFNEREVMLLWPDFIAYNPKNGKNETFPAPAYACGLRAYID
                     HEQGWHKSLSNVPVKNVLGMSRHVFWSLQAEDSDANSLNNKEITTIIRRNGFRFWGNR
                     TPETNAYIFEVYTRTAQVLADSIAEAQFETIDSPLTPANVKDVISAIRAKLDSLVTAG
                     KLIGAECWYDVVDNSTTDLRQGRVRIRYKYTPVPPLEDMELYQTFTDEYFEPAFAVLG
                     GA"
     gene            8671..9780
                     /locus_tag="OQQ75_002944"
                     /pseudo
     CDS             8671..9780
                     /locus_tag="OQQ75_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494339.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
     gene            10029..13148
                     /locus_tag="OQQ75_002945"
     CDS             10029..13148
                     /locus_tag="OQQ75_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1977192.1"
                     /translation="MIGQFLSATEILAKNYVRNKMVKNPFYSNLKWNFIEKNIIRLTS
                     SPVKSVLCISAFSFVLLYVGYLNELFIKNNLLHYFPFRHSLTEWQTTILSGQLTIIGI
                     VYPLVIGLVSVLFQKKADRKIAQTAYQRYSGFMLAGLSGLFLSGFILLSVLIKTVFGS
                     YLYGIACLISILWLLINIVLSIWFFIVSLEILDDVKRQIIIKRYIAFEIVMPHICNKI
                     SAKLRLYPIYQKHNYSNLEITQADYKGEYISVASSYSKEDELSLYHRPFQLTLNLINY
                     QLKKKNHFASFVIGDNRTKETESTGKILFSVKNIKPDSLLIKILKQCFYRAPIKGGDF
                     SVSLTMQAITADTYMYLRDSDLISFDNAISALINNFNNLCDLYFFQDDNTNNNFLLIT
                     TELFERSFQYEFSDEVYKISNNSMDKINLSERFFELCLWSGVRIINNRKHLISNELCI
                     YMGITRSQWSILTEWFRNNQSLLNASLRSRYNRILRTYITVWEQYQESINFRFCNTEN
                     SDLFELFCKTQLQELPSMIIDATQTRDPSTIDTAVDLINRWQHSMNIDSHSVEKYSYK
                     GQLFNPVFFISKKLNFNSDREWFNIAIINALTDMRICTCLYLTSRINTSDKLMTHYIK
                     LILEGKLIDQTGGYETPTEEIDNASQLIKILIRICLWTWSENMEHNGWMNSLARRLRD
                     YDKTDMVMGRVYSNVFDCGFIDMEQSWVQLLLIFSKKNDSVSKEIKEAIENNYITYRE
                     KQRLIGVLSKICNSIEYTQIKLTLTLDDLQTKKENLRKLLQEHINMLKKDLDMRLQDA
                     AIDVHRLDSTARKTSEHLRKRIKKTLPLSLFKSIDFKQASDCFTKHKISIKIDKEPYA
                     EGIESIPYINEGDIQADLILKDIQRIILSNLFSTGCSQHTVIEDFNMLIDHIKSSADL
                     AGKLVLVMSKEIFQQYNRMLFDNPNLRELMRKNDDGSMNITTESGTRKVYFLPFVNQP
                     FSLVVKDNYFTKLIIREYDNNKLVNVTSENIKSDSDKFKLTLNYELNIVFEGNADLKI
                     AHSQRVTSE"
     gene            13284..>13477
                     /locus_tag="OQQ75_002946"
     CDS             13284..>13477
                     /locus_tag="OQQ75_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001512982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1977193.1"
                     /translation="MFRCPLCGASARIRTSRPENDSNTVRQKYYQCNNLECGVCFSTL
                     EAFHKFTSKHASPIHSSEGIP"
BASE COUNT         3709 a         3315 c         2997 g         3456 t
ORIGIN      
        1 gctattgctt ttaaaaatat tcaggccggg gatggtaaaa aattcacgct atccagctcc
       61 aacaactcca caaagaatgc aacgtttaat ttatggggtg cttcaacccg tccagtagtt
      121 gcagagttag gcaatgaggc aggatggcat ttctatagcc agcgaaatac agataactcg
      181 gtaatatttt ctgttaacgg tcagatacag cccagcaact gggggaattt tgattcacgc
      241 tatgtaaaag atgttcgcct gggtacgcgt gttgttcaat tgatggcgcg tggtggtcgt
      301 tatgaaaaag ccggacacgc aattaccgga ttaagaatca ttggtgaagt agatggcgat
      361 gatgaagcca tcttcagacc aatacaaaaa tacatcaatg gcacatggta taacgtcgca
      421 caggtgtaaa ttatgcagca tattaaaaaa tattaagtcc ggaaatccaa aaacaaaaga
      481 acaatatcag ctaacaaaga attttgatgt tatctggtta tggtccgaag acggtaaaaa
      541 ctggtatgag gaagtaaata actttcagga cgacaccata aagattgtat acgacgaaaa
      601 taatattatt gttgccataa ccaaagatgc cccaacgctt aatcccgaag gctttagtgt
      661 cgttgagatt ccagatataa cagccaatcg tcgtgccgat gattcaggga agtggatgtt
      721 taaggacgga actgtggtta agcggattta tacagcagac gaacagcaac aacaggccga
      781 atcacaaaag gtcgcgttgc tttctgaagc tgaaagcgtt attcagccac tggaacgcgc
      841 tgtcaggctg aatatggcga tggatgagga acgcacacga ctggagtcat gggaacgcta
      901 cagcgttctg gtcagccgtg tggatacagc aaatcccgaa tggccacaaa agcctgagta
      961 aaaattaagg cccaatatcg ggccttctct cattctggtt gttcgggaaa cgttactggc
     1021 aggctggagg tgtctgtaga ttcgactttc tgcgcataga gcatccactc ggttaatttt
     1081 tgtttattct cgtcggaaat gatgcccagt cgtagctgtg agtcccatag ctgggtttta
     1141 tccctgacaa gttgcaacag gctttgcttt tcattttccg cttgttgcct ctgctcttcc
     1201 tcggtataag ttcgctttat cactacgcca tctttgaaca accatttccc cgaaatatca
     1261 gcccggcgat ttgctgtaat atcaggtaat tcaacgacgc ttgcgccttc cggattaatt
     1321 gctgaaacat ccttttcaat acaaataata acgccgttat ggtaatagac cattttcaaa
     1381 gtgtctggct ggaaattctt ttgttcctca taccagtttt ttccatcatc tgaataaagc
     1441 catttgatgt taaattgctt tgttagctgg tattgctctt ttgttttagg gttgccagca
     1501 gtaatgtttt ttaagtgcat catcgttaaa tactccccgc gttataccac gtcccattaa
     1561 tgcaatactg aattggcctt gcctgtgttg tatcaattaa ttcatcacgg tttccgttaa
     1621 ctgaacccgt aacgacataa cctgacctgt cagaccagcc gggaccattc catgtctgaa
     1681 cagatgacag accgccaagg cgaatacctg taataaacct tgagttacat tctgcccgcg
     1741 tatatgcacc aacatctccc gctgaaggtt ttcgtgtcgt ggtatagaaa tctgaccaac
     1801 ctaattcaac cccataacca tcacgagccg acctgtagga aatgccacca tttttataat
     1861 tcacacggaa ttgtacggca ggacagctac cagcatttat attaaagtga agaattaatg
     1921 cagatgcacc accaatcagg gcgttatatg caccactatc ccaattccat ccaacggatg
     1981 tatcaccatt aacagtatta cctgtttgtc ggagtgcaaa tgcattgaca tttttggcac
     2041 taattgagat atcgctagaa ccatcaaaac caactccagc aatttttcgt gctgttttca
     2101 gctttgttgc agtagcggca ttgccggaca gttccccaga aaggccaccg ctgaatgttt
     2161 gtcgattggt ccaggtattc gctgtactga gtaacggtat tttctccccg cttgtgccga
     2221 gttctcgtaa accgaggttt taaataatgg ccgtttctgg cctgcatggc atgatttgcg
     2281 cttttggacg ggagattcag tgtgctgatt ggctatgtaa gggtatcaac aaatgaccag
     2341 aatacagacc tgcaacgaaa cgctcttgtt tgtgcaggat gtgaacaaat atttgaagat
     2401 aaattaagcg ggacaaagac agaccgaccg ggattaaaac gcgctttaaa gcgccttcaa
     2461 aaaggtgaca cgctggttgt ctggaaactg gatcgcctcg ggcgaagcat gaaacatctg
     2521 atttctctcg tcggggaact acgggagcga gggattaatt ttcgcagtct gaccgacagc
     2581 atagacacat cttctccaat ggggcgtttt ttcttccacg tgatgggtgc cctggctgaa
     2641 atggaacgtg aattaattgt tgaacgtaca ctggccgggc tggcggcagc gcgcgcaagg
     2701 gggcgcacag gcggacgtcg accgaagctg acaaaagaac agcatgagca aatagcaagg
     2761 ctaatcaaaa acgggcacga cagaaaacaa ctggcaataa tttacggcat tggcacatcg
     2821 acgatttatc gttatcaccc tgtaggcgat atacagactg aagaaacaac cgggcagact
     2881 caggaaaatg aaaaccgcta atctgaccat tagcggtttt tgtgttaaat cagaacagcc
     2941 ctttaactga actggccgcg ctgttaagag atgatgtcac cttatctttg aagccggaca
     3001 gcatatcact gaacgatgag gattgcaggc gctcccgcaa atcctcatca cagcgttcaa
     3061 gagtcagtga aaattctatc tttttcgcct taccgtagcg atcaaactcg gagcgggtcg
     3121 tattcgtttc agtcaggaca tacatgccgt aaatctgccc gacgccatca atcaaaggcc
     3181 agggtcgtcc tgtatacgcc tgcgtagtca gcagcgacag cgacacttcg ccacctgtaa
     3241 tttcaggata aagcacacca gaaagaacga tgcgatcatc acctgcaccg atatactgcc
     3301 agcttgctga acggttaacg cgttcatttt tcacatgccg ccagcttttg ttttgctgta
     3361 actgctgatg cggcagcgtg cgcagctcaa aaacaaacat gccgtagatc atcatcatgg
     3421 ccatgactcc tcaatcttta tcgtaaaaac agccacgccc ggcacgggcg cgccgttcca
     3481 tttctgccct gaccatttca ccgaccagtt tcgccagttc gcggggattc tgcgtaacaa
     3541 cgttatgcag atgaacatga atttcaccac caaatccgaa ggcaacaggc tcccggttac
     3601 gggaagttac aggaactgat gccactggag atcgtatagc ctccgccacc gggcgggagc
     3661 tggccgcaac aacagggacc agcgccggag gcagcggagc cggaaccacg ggtgtgatat
     3721 taattgcggg ggcaggctta ctgacctgcg caatcttccg ctcctgccac tccccacgaa
     3781 cagcaagtgc tcggggcagg tttttaaaga caatatcgcc ggggccaatg cgttttttcg
     3841 tctcctcaac cagcttacct gtgttatcag caattttgct gagtctgcgc agcgtaccgg
     3901 tattgctgtc tgtgagcggt ttattgtctt tggggttatc acctccggtg ccattgccat
     3961 tttccacagg cttcggcgga ttgattttcg ccagatcccc ctgaagcaag gcaaccttgt
     4021 cctgaagaat ggccgcacgc tgtgcgtctt cgattttctt gcgcgccctt tccgcttcat
     4081 ccggaagcac accaagcttt tcaagtatcc acgccagcgt atccagcaac atttttgcag
     4141 gtgtcagaac aagttgtaac gcaccgccaa gaacgttacc gaatatctcg ccagcactgg
     4201 tacatttatc cagagtttcc ttgctggact ccatcggtga cagcagcgat ttaaaccagt
     4261 taaacacctg gctgatccca ctcccgattg cgtcaaaaac aggaccaaac cgttcaaagg
     4321 tttcgcgcaa cggggtcagc ctttccataa tcccgctgaa caccccggca aaaaatgccc
     4381 tgatgggatc ccagtatttc cagataagaa cggcagctcc ggcaagcgca gccacgataa
     4441 gaccaaccgg actgaacaac gccccgatag cgcctcccag taaagaaacg gaacccgtca
     4501 ccattcccca tagtgctggc agaaccctga cagcattcat tgatccggtc aggagggaaa
     4561 aaccaagacg cagttttgcc agcgggccag caagcacacc aatagccagc gacaacgagc
     4621 caaccgttgc agtcattgcc agcaatgcac cgcctgcaat cagtagctgg cgcgtcagtg
     4681 cgggatgggc ctgcgccagc gccgtcacct ttgataccac acgcgtgagc cactgcgtga
     4741 cagaacgcag cggaccgtca atcagatctg caatgcggat gcgcaaccct tcccatgcac
     4801 tgctgagtga tttcagatcg ccgtcaaggt tgttggccat aacctttgcc gtgcgttcag
     4861 cctcaccgcg cgcgccttca agttcttttc tcagtttggg taaggagccg tcacctgccg
     4921 catcaacgag ggccataaat gatgtgaaag cctcttctcc ggcaatgtcc ttaaagaacg
     4981 atacccggtc aacttccccg tatttgcggg tagctttata aaggtcagcc agcacatcct
     5041 ccatcgggcg cattttgccc ccggcatccg agacagacac gccaagctct ttcagcgcct
     5101 ctgctgccgc ctttggcggt gatgccagac gagccaggct ggcacgcatt gccgtaccag
     5161 catcactccc cctgataccc atattcgcca gcacgcccgc catcgctgcg gcctgctcca
     5221 gagatattcc cagcttaccc gccaccggac ctgcatattt catggtttca cccagtgcgc
     5281 gaaggtcagt gttggtacgg gtaaacgctg cggtgagtgt gtcgccgacc cggtccatct
     5341 ggtcagcaga aagaccgaac tgcgtcagaa tatttgagcc aatatccgcc gtctcaccga
     5401 ggtccatacc gccagccgtt gccatgctca gtacgccagg gagcgcagcc tgaatggcct
     5461 gtggtgtaaa gccagccatt gcaagaaatg cctgtccact ggcggcatcg cctgcggtga
     5521 actgcgtttc agagccaagt tttaacgcct gctcacgcag cgccttaaac tgcgggctgt
     5581 tctggtcgat tcgcgtcagt gcctgaacgc gggacatctc tttgccgaac ccgatcgcag
     5641 gctgcaaaaa acgcccggca gcatagccgc ccgccgctgc cgcaccaatt gccagcgcac
     5701 cacctgtttt cagttttccc gctgtttcct gcgcgcgcga ataccgctca cgcgcccgtg
     5761 ttacacgcgc aagcgcctgc cgttcgcgtt caagctggtt gttgtactgt tcggtgcgtc
     5821 tgatggcctg ctggatggtg ttatcgctgc ctgtcaggga aatgccgtgg cgtttcagct
     5881 ctccgccaag ctcccgcatt ttctgaattt cccgtgtgcg cgattcattc aggcgttcaa
     5941 gccgggtgct taactgctgc atcagctttt gttgtttttc gctgagcact gtacccgtgc
     6001 gttgtaactg attaagggcg ttaagctggc gtcgtgcttt cacgatgcca gcatccgctt
     6061 tactgacagc gtcacgggcg cgctcaaatg atcgcgcctg acgctcgaga tttttgatcg
     6121 ccccctgcgt tcgctggatg gagtcaccaa actgccccat caggcggcgg gcgttttcgg
     6181 caggccgggt cagcctgtca acggcgctga aagcgacccg gatatcaaga gtcttcattg
     6241 tctgcattcc cgctacgaag tgccgcccgc tcacgtcagc taaccacttc gccgggcgtc
     6301 atcatgaaga tttcggcggg cgaccagtta aaaatggcgg caatatccgc caccagatct
     6361 tcgatgtgct caaagcacac cagggtgatt acgctgccgt ctcctgcacg ctcttcgcgc
     6421 cagagtctgg ctcgctcata aaatttacag ccacagcgca caactgaata aaatcgcgtg
     6481 acgacatttt tttaatcatc acttcatcca gtcgtggcga ggtcacgcga ggcaacagcg
     6541 tgaacatggt atccgctttc agattcagca catcagacag cgacagacca cgcagggatc
     6601 cagcctgctc aatagccccg gtgatctcca catacgtgat tttttcgcca ccacgctcaa
     6661 ttggtcgggt cagttttacg ccacgttcga cagccatatc ctcaactgcc gtcacattat
     6721 ccgccacggt gttattccgg gtttcagtat cgatgtcttt catctgttgt ctccttttca
     6781 gtcagaggcg acgcactgcg ccgccagcat attacttatc agccaagccc aagcgcggaa
     6841 cggatgcgat cgggcacaat gtccttgccg tccttccggt aaatgaagtt cagcaggtca
     6901 atctcccaca acgggcgatc gttaacactc agcttgtagt aggtgtttta atggcgtaag
     6961 tgtgtgatgt ggcttcgccc tgtttggctt cccccatatc aatttccgtc acacgtccgc
     7021 gcatttcgac ttcatacagg tcgctttctg catcggtgta gtattcaccc gcaaaacgca
     7081 gcagcgtgcc gtcaatcgtg ccgccatact taaggaacag ctcacgaact gcgcccccat
     7141 gacaaagctc gcatcaagcg cggagtcgtc cagaccgaga tcaatactta ccgcacccat
     7201 catgccacca ccccggtagc tgtcggtttt gcgcgtcagc ttaggcagag tgacggacgt
     7261 cacattaccc acttcgtttt caccatccac aaacagcgta aaaaagcgaa gatgttttgg
     7321 cacagccatc aggcacctcc cagcaccgca aatgcgggtt caaagtattc atcagtaaac
     7381 gtctggtaaa gctccatgtc ttccagtggc ggaacgggcg tatatttgta gcgaatacgc
     7441 acacgtccct gacgtaaatc cgtggtgctg ttatccacca cgtcatacca gcactccgcg
     7501 ccaatcagtt tcccggcagt caccagtgaa tccagttttg ccctgatggc actgataaca
     7561 tccttcacat tcgcaggcgt cagtggactg tcgatggttt caaactgcgc ttccgcaatt
     7621 gaatcagcca gcacctgtgc ggttcgggta tacacctcaa agatgtaggc gttcgtttcc
     7681 ggtgtgcggt taccccagaa gcggaacccg ttgcgacgaa taatggtcgt gatttctttg
     7741 ttgttgaggc tgttggcatc gctgtcttcg gcctgcaacg accagaacac atgcctcgac
     7801 atccccagca catttttaac cggaacgttg gacagcgatt tgtgccatcc ctgttcatgg
     7861 tcaatgtacg cacgaaggcc gcacgcatag gcaggcgcgg ggaacgtttc gtttttgcca
     7921 tttttcgggt tgtaggcgat gaagtccggc cataagagca tcacctcacg ttcgttgaat
     7981 ttctggcggt aggtaattgc ctcggccatc gtgttacagc catgacatga ggcatacaca
     8041 aacgcgcgca gtttatctgc aatcacgcac agggattttg ttaccgcctc cgtgtccagc
     8101 tccggcgcgg ccagaatacg cggacggtat ccgatgcttt catcctgctc tgcaacaagc
     8161 agcgcataca tccccgtata gctgccgtca tcctcagaac caccgataac cagttgatcc
     8221 tgcgtctttc cgtcttcttc tttgtgttca gccacgcgaa cgacgatcac ctttgtgctc
     8281 acctggtctg cgatggcctt aagcgcacga taaagcgtcc ccgttgtccc gcattttccc
     8341 agcacgtcat tgacgcgggt cagcagtgtg ggcttgttca gcgggaacag cttcgcgtcc
     8401 gcatcatccg ccgttgccac gataccgata acgctggaat caacatcgtt aatcgctgtt
     8461 accaggtcgg tattctccgt aacacgggca ccatgaaaac gagtttcact catagcttca
     8521 gccccttgta tccgttaaat gattcagcaa caatcatcac ccaccacgcg cgtaatctca
     8581 cccctgcgcc gttctcccgc cacggcgaca acaaaaagca gtaaccccct ccgcacgcac
     8641 atgcgaccat gccgcacagg gagggagcag atgaccgaca ccaccatgca attgctcagt
     8701 cagggcacgg cccccgtgaa aatgccggat tttgatattc tctcggaggg taaaacgctg
     8761 tcaggcgtgg cggagcgcct gatgagcctg taactgaccg acaaccgggg atttgaggcg
     8821 gaccagctca ccatcacgct ggatgatgcg gatggtcagt tgcagctacc gccacggggc
     8881 gcgcgtctga cggttctcat tggctggaaa ggggaaccgc tgacagaaaa aggcacttac
     8941 attgttgatg aaatcgctca cgaaggaccg ccggacaggc tgactgtttc agccagaagc
     9001 gcagattttc gggatgaatt taacgttaaa cgtgaggtgt cctggcatga tgtgaccgtt
     9061 gagcgtgtgg tatccgccat cactcatcgg tacggtctga aaccgcaaat cagcgaaatg
     9121 ctgatggata tcgaaatcga ccacgccgac cagaccgaag aaagcgacat gtcctttctt
     9181 acgcgcatgg cggaaatgct gggagcaatc gccacggtaa aaagcggcaa tctgttattc
     9241 atcatgccag gtggtggcgt gaacgcacag gggcagccgt tgccctcgtt cgccattaca
     9301 cgcagcagcg gcgatcgcca tcagttccgc attgctgacc gcgaggcgta tacgggggta
     9361 cgcgcctact ggcttgatct taattacggg aaaaagaaaa aagtcagcgt gaaacgccgc
     9421 aaaccgccaa aacccaaaaa ggagaaaagc agcagtcggg aaggcgacta tatggaaggt
     9481 gcggaaggca acgtgtttgt gttacgcaag acttatcaga acgagcaggc agcaagacgc
     9541 gcagcggcgg caaagtggca gcagctacaa cgcggagccg catcattctc catcacgctg
     9601 gcgcgtggtc gtgcagaact ctatcccgaa atgcatggca cagtgacagg ctttaaaagc
     9661 gagattgatt atcaggactg gactattgca aaagccgagc acaccattga taacagcggc
     9721 tttaccacgc agcttgaact tgaagcaaaa atcccggaat ggatagcaga aacagaataa
     9781 atctcttaaa aatattattt ttgagatgtg cttctacact gacagtaaga acaaaagata
     9841 atgtatcagc ccactagatg tcagaggttg gggcatcaac cagatgctaa caataatacg
     9901 gatgtttttc ccacatgaca gaggaagtca agtataatct tcacagtcca tcccgtccaa
     9961 gggaatatga ctcaatagta aaagttccag tttagttagt agacccacac tttatagaag
    10021 agtaattcat gattggacaa tttttaagtg caacagagat tttagcaaag aactatgttc
    10081 gtaataaaat ggttaaaaat ccattttatt cgaatttaaa atggaatttt attgaaaaaa
    10141 acatcataag attaacatcc tcaccggtta aatcagtact ttgcatatca gctttttcat
    10201 ttgtactact ttatgttgga tatttaaacg aattatttat aaaaaataat cttttacatt
    10261 atttcccgtt taggcattca ttaaccgaat ggcaaacaac cattttaagt ggccaattga
    10321 caattattgg tattgtatac ccccttgtta taggtttagt aagtgtctta ttccaaaaaa
    10381 aggcagatag aaaaatagcc caaactgctt atcagcgtta ctcaggattc atgcttgctg
    10441 gactcagcgg gcttttctta tcaggattta tacttctcag tgtactaatt aaaactgtct
    10501 ttggaagtta tctttatggt atagcttgtc taatcagcat attatggctt ttgataaaca
    10561 tagttctttc tatttggttc tttatcgtga gtcttgaaat tcttgatgat gtaaaacggc
    10621 aaataattat aaagcgatac attgccttcg aaatagtaat gccccatatt tgtaacaaaa
    10681 tctcagccaa gcttaggtta taccctatct atcaaaaaca taactattca aatttagaaa
    10741 tcacgcaagc cgattacaaa ggagaataca tatctgtggc tagcagttat tctaaggaag
    10801 atgagttaag tttatatcac cgtccttttc aacttactct taatcttatt aattaccaac
    10861 taaaaaagaa gaatcatttt gcgtcatttg tcattggtga taatcgtaca aaagaaacag
    10921 aatccacggg taagatactt tttagcgtta aaaatatcaa accagacagc ttattaataa
    10981 aaatacttaa gcaatgtttt tatagggctc cgattaaagg aggagatttt tccgtaagtc
    11041 ttacaatgca ggctataaca gcagatacgt atatgtatct gcgggattct gatctcatta
    11101 gttttgacaa tgctatctct gcattaatta ataactttaa taatctctgc gatttgtatt
    11161 tttttcaaga tgataatacc aacaataact tcttactgat cactacagaa ttatttgaac
    11221 ggagttttca atatgagttt tcagatgaag tttataaaat atcaaataat tccatggata
    11281 aaattaatct ttctgaaaga ttttttgaat tatgtctttg gagcggagtg cgtattatca
    11341 ataatagaaa acatcttatc agcaatgaac tttgtatcta tatgggaatt actcgttcac
    11401 aatggtcaat attaacagaa tggttccgaa acaaccaatc actcttaaat gcctcgcttc
    11461 gttcacgtta taatcgtata ttaagaacct atatcactgt ttgggagcaa tatcaagaaa
    11521 gcataaactt tcgtttctgc aatacagaga attcagattt atttgaatta ttttgcaaaa
    11581 cgcaactaca agaacttcca tcgatgatta ttgatgcaac acagactcgc gatccttcta
    11641 ctattgatac agccgtcgat cttattaacc gatggcagca ctcaatgaat attgacagcc
    11701 attcggtaga aaaatacagt tacaaaggcc agctttttaa cccggttttt ttcatatcca
    11761 aaaaactaaa cttcaattca gacagagagt ggttcaatat tgccatcata aatgcgttga
    11821 ctgacatgcg tatatgcaca tgtctttatc tgacatcaag aatcaatact tctgacaaac
    11881 taatgacaca ttacattaaa cttattttag agggtaaact tattgaccaa accggtggat
    11941 atgaaactcc cactgaagaa attgataatg caagccaact aatcaagata ttaattagaa
    12001 tctgcctgtg gacatggtct gaaaatatgg agcacaatgg gtggatgaat agtttagcaa
    12061 ggcgtttacg tgactatgat aaaacagaca tggtgatggg cagagtttac agtaatgttt
    12121 ttgactgtgg atttattgat atggaacaat catgggttca gctattatta attttttcta
    12181 aaaagaacga tagcgtatca aaagaaataa aagaagcaat agaaaacaac tatataacat
    12241 atcgtgagaa gcaacgactc attggagtat tatcaaaaat ttgtaactcc atcgaataca
    12301 ctcaaatcaa gctgacttta acattggacg atctccaaac aaaaaaagaa aacttaagaa
    12361 agttgcttca agagcatatt aacatgctaa agaaagatct tgatatgaga cttcaggatg
    12421 ctgccataga tgtacatcga ctagatagca ctgcacgtaa aacatcagaa catcttcgta
    12481 aacgcatcaa gaaaacgctc cctctttcac ttttcaaatc tattgatttt aagcaggcta
    12541 gcgattgttt cacaaaacat aagatatcta ttaagataga taaagaaccg tatgccgaag
    12601 gaatagaatc catcccttat atcaatgaag gtgatattca agcagactta attctcaagg
    12661 acatccagag aataatactt tcaaatttat ttagcactgg ctgttcgcaa cataccgtaa
    12721 tagaagattt caatatgttg attgatcaca taaaatcatc tgctgacttg gctggcaaac
    12781 tggttcttgt gatgagtaaa gagatctttc agcaatataa tcgtatgctt ttcgataatc
    12841 ccaacctcag agaactaatg agaaaaaatg atgatggctc tatgaacata actactgaat
    12901 ccggtacccg taaggtttac ttcttaccat ttgttaatca accattttct cttgtggtaa
    12961 aggataacta cttcactaaa ttaattatta gagaatatga taataataag ttagtaaatg
    13021 tcacttcaga gaatatcaaa agtgactcag ataaattcaa gctaactctt aactatgagt
    13081 tgaatatagt atttgaagga aacgctgatt taaaaatagc tcactcgcaa agagtgacat
    13141 cagaataata tctttgacgg cgctccttag agtgccgttc gtttattaac taatgctaaa
    13201 aatcattata tagagaaagt catgtttaaa tcttagagaa tacaacctag aatagtgtaa
    13261 gcactacaat aagagaggtc gctatgttcc gttgtccgct ttgtggcgca tctgcccgta
    13321 tccgcaccag tcgtccggaa aatgattcaa acaccgtgag acaaaagtat tatcagtgta
    13381 acaatctaga atgcggcgta tgtttctcaa cactggaagc cttccacaaa ttcacttcaa
    13441 agcacgcctc ccccattcac tcatcagagg gcatccc
//
LOCUS       DAJVUP010000113        13357 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.113, whole genome shotgun sequence.
ACCESSION   DAJVUP010000113 DAJVUP010000000
VERSION     DAJVUP010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13357
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.113"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(161..1084)
                     /gene="dmlR"
                     /locus_tag="OQQ75_002947"
     CDS             complement(161..1084)
                     /gene="dmlR"
                     /locus_tag="OQQ75_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310535.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DmlR"
                     /protein_id="HCS1977194.1"
                     /translation="MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLE
                     QTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISS
                     FGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARK
                     LATNYRILCASPEFIAQHGAPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGHHAIKV
                     TGPLSSNHGEIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVS
                     RLATSAKVRITVEFLRQYFAEHYPNFSLEHA"
     gene            1187..2272
                     /gene="dmlA"
                     /locus_tag="OQQ75_002948"
     CDS             1187..2272
                     /gene="dmlA"
                     /locus_tag="OQQ75_002948"
                     /EC_number="1.1.1.83"
                     /EC_number="1.1.1.85"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional
                     D-malate/3-isopropylmalate/tartarate dehydrogenase"
                     /protein_id="HCS1977195.1"
                     /translation="MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFDLSFEQMG
                     WASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQ
                     YINLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQES
                     VFTRRGVDRILRYAFELAQSRPRKTLTYATKSNGLAISMPYWDERVEAMAENYPEIRW
                     DKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFP
                     SLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIA
                     HGPKTPDMKGNATTPQVADAICKIILR"
     gene            2522..4132
                     /gene="yeaV"
                     /locus_tag="OQQ75_002949"
     CDS             2522..4132
                     /gene="yeaV"
                     /locus_tag="OQQ75_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter YeaV"
                     /protein_id="HCS1977196.1"
                     /translation="MMSNVKKKDVPLISISLVAILFIAAALSLFPQQSADAANAIYTF
                     VTRTLGSAVQVLVLLAMGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSST
                     LYWGVAEWAYYYQTPGLNIAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFH
                     VRKNKGLSLSGIIAAITGVRPQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSA
                     LTGLPDNFTVQAFVILLSGGIFCLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPT
                     EFITNSIINAIGLTTQNFLQMSLFTDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTR
                     VSRGRKIKEVIWGLILGSTVGCWFFFGVMESYAIHQFINGVINVPQVLETLGGETAVQ
                     QVLMSLPAGKLFLAAYLGVMIIFLASHMDAVAYTMAATSTRNLQEGDDPDRGLRLFWC
                     VVITLIPLSILFTGASLETMKTTVVLTALPFLVILLVKVGGFIRWLKQDYADIPAHQV
                     EHYLPQTPVEALEKTPVIPAGTVFKGDN"
     gene            4164..5288
                     /gene="yeaW"
                     /locus_tag="OQQ75_002950"
     CDS             4164..5288
                     /gene="yeaW"
                     /locus_tag="OQQ75_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaW"
                     /protein_id="HCS1977197.1"
                     /translation="MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFA
                     KSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGK
                     AKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPN
                     ATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTSANWKNIVDNYLECYHCGPAHPG
                     FSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPI
                     KGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQK
                     GLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD"
     gene            5344..6309
                     /gene="yeaX"
                     /locus_tag="OQQ75_002951"
     CDS             5344..6309
                     /gene="yeaX"
                     /locus_tag="OQQ75_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaX"
                     /protein_id="HCS1977198.1"
                     /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVI
                     VQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTP
                     NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV
                     QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAAD
                     TLHFEQFAIEDKTGDAFTLVLARSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG
                     TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL"
     gene            complement(6363..7478)
                     /gene="rnd"
                     /locus_tag="OQQ75_002952"
     CDS             complement(6363..7478)
                     /gene="rnd"
                     /locus_tag="OQQ75_002952"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310540.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HCS1977199.1"
                     /translation="MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD
                     GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL
                     SAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA
                     KLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD
                     WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLTLVE
                     KAQTLPEEALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL
                     NWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ"
     gene            complement(7559..9244)
                     /gene="fadD"
                     /locus_tag="OQQ75_002953"
     CDS             complement(7559..9244)
                     /gene="fadD"
                     /locus_tag="OQQ75_002953"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HCS1977200.1"
                     /translation="MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVN
                     MGEVMTFRKLEERSRAFAAYLQQGVGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV
                     NVNPLYTPRELEHQLNDSGASAVVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAK
                     GTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT
                     GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELG
                     GQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGG
                     MPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLV
                     DDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRI
                     VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKAPSL
                     TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA"
     gene            complement(9449..10030)
                     /gene="yeaY"
                     /locus_tag="OQQ75_002954"
     CDS             complement(9449..10030)
                     /gene="yeaY"
                     /locus_tag="OQQ75_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein YeaY"
                     /protein_id="HCS1977201.1"
                     /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGRSPTPQQDLVRV
                     MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN
                     GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
                     DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE"
     gene            complement(10070..10765)
                     /gene="tsaB"
                     /locus_tag="OQQ75_002955"
     CDS             complement(10070..10765)
                     /gene="tsaB"
                     /locus_tag="OQQ75_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HCS1977202.1"
                     /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD
                     ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA
                     WRKNGATRVLAAIDARMGEVYWAEYQRDENGIWRGEETEAVLKPELVHERMQQLSGEW
                     VTVGTGWQAWPDLGKESGLVLRDGEVLLPATEDMLPIACQIFAEGKTVAVEHAEPVYL
                     RNNVAWKKLPGKE"
     gene            complement(10823..12733)
                     /locus_tag="OQQ75_002956"
     CDS             complement(10823..12733)
                     /locus_tag="OQQ75_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HCS1977203.1"
                     /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE
                     AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG
                     RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL
                     VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE
                     ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
                     QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA
                     AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW
                     IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGSAR
                     QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV
                     SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD
                     EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA
                     RAVRFLAIPSSR"
     gene            12865..13209
                     /locus_tag="OQQ75_002957"
     CDS             12865..13209
                     /locus_tag="OQQ75_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1977204.1"
                     /translation="MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLA
                     QIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP
                     KYKVEIKIVAAV"
BASE COUNT         3195 a         3553 c         3332 g         3277 t
ORIGIN      
        1 tccagtaatt cagaaccccg tattcagcga acacattaac ctctttaatt atctttcgat
       61 catgcgcgat taaaggtgaa tatgctaacc aatctgtagc ggcttagaaa ggagaaaatc
      121 aggttttaac ccgatatcaa cccgataatt gaatcattaa tcaggcatgc tccagtgaaa
      181 aattcgggta gtgctcggca aaatactggc gtaaaaattc taccgttatc cgcactttcg
      241 ctgacgtcgc cagccttgaa acataaacgg cccagacgtt cgctggctgg taatattccg
      301 gtagcacttg cactaaatga ccactggcaa tgttttcgct aacatcccac caggaacgca
      361 gagcaatccc ctgcccatcg agacaccact gatggacaat ttctccatga ttagacgaca
      421 gtgggccggt gactttaatc gcatggtggc cttctttatt gcgtaattgc cagacaccaa
      481 aaggatgatc gcgctcttta atgaccaggc acggcaatgc agaaagatcg gttaaatgtt
      541 tcggcgcgcc atgttgcgca ataaattccg gcgacgcgca gagaatgcgg taattggtcg
      601 ccagtttgcg ggcgattaaa ttaggggcga tgtcatcgcc aatgcgaata tcgagatcga
      661 caccttcatt gaccaaatcg accagccggt cttccacatc aaaacgtaat tccagttgcg
      721 gatacgcctt cgccagcgct gataacgccg gagccaccac ctgtcgtcca aaaccaaagc
      781 tgctgataat acgcagcatc ccctgtggca cctgacgcac gtcagaaagt tcgtccatca
      841 tctgaccgac atcctgcaaa atccgctgcg cccattcata aatccgctct ccttcttcgg
      901 taatggtgac gcggcgggtg gtgcggtgta acaacaccac gtttagcgtt tgctccagca
      961 aggcgatgcg cttgctgacg aacgccggtg aaacgcccag ttcttccgcc acggcggcaa
     1021 aaccagcccg acgagccacc agcataaaga cgcgcaaatc attcagcagc ggtaaattat
     1081 tcatgattcg tgttttatgt ttcaccagtt acggggatta attccttttc cgtcaattat
     1141 aggatggtga tgttgtcaat tttgatggtc aggaagtgag aacccaatga tgaaaacgat
     1201 gcgtattgct gcgatcccgg gagacgggat tggtaaagaa gtccttcctg aagggattcg
     1261 cgtgttacag gctgccgctg agcgctgggg cttcgacttg agttttgagc aaatggggtg
     1321 ggcgagctgc gagtattaca gccatcacgg taaaatgatg ccggacgact ggcatgagca
     1381 acttagccgt ttcgacgcca tctattttgg tgccgtcggc tggccggata ccgttccgga
     1441 ccatatttcg ttgtggggtt cgctgctgaa atttcgtcgt gaattcgacc agtacatcaa
     1501 cctgcgcccg gttcgtctct ttcctggcgt tccctgcccg ctggcgggaa aacagcctgg
     1561 cgacatcgat ttttacgtgg tcagggaaaa caccgaaggc gaatattcct cgctcggcgg
     1621 tagagtgaat gaaggtacag agcatgaagt cgtcattcag gaatcggtat ttacacgtcg
     1681 tggtgtcgat cgcattttgc gttatgcctt cgaacttgcg caaagccgcc cacgtaagac
     1741 gctaacttat gccactaaat cgaacggttt agccatcagc atgccgtact gggatgagcg
     1801 agtggaagca atggccgaga attacccgga gatccgctgg gacaagcagc atattgatat
     1861 tctctgcgcg cgttttgtga tgcagccgga acgcttcgat gtggtggtgg cgtccaattt
     1921 gtttggcgat atcctttccg atcttggccc ggcctgcacc ggcaccattg gcattgcccc
     1981 atccgccaac ctgaatccgg aacgcacttt cccgtcgctc ttcgagcctg tccacggttc
     2041 cgcgccggat atctacggga aaaatattgc taaccctatc gccacgattt gggccggggc
     2101 aatgatgctc gattttctcg gcaatggcga tgagcgtttc cagcaagcgc ataacggtat
     2161 tctggcagca attgaagaag tgattgctca cgggccgaaa acacctgata tgaaaggcaa
     2221 tgccaccacg ccacaggttg ccgacgcgat ttgcaaaatt attttgcgtt aaggtcaaac
     2281 cagtttattt gaaccgcgtc actgacgcgg ttttttattc gttctttgca gtaaataacc
     2341 tgcgtcattt caccttttat tgtttccgtt tcgtgtttta tggctttccg cattcttaat
     2401 tgtttaattt atgtaatatt caaataatca atttgttaaa cacaacatac aactcattac
     2461 cctgcaaata attacaactg gcaaaagcca gagacgggct tttatgccca ggagatgact
     2521 catgatgagc aatgttaaga aaaaagatgt gccgctgata agcatcagcc tggtggccat
     2581 tcttttcatc gcagctgcat taagcctttt cccacaacaa tcggccgacg cggccaacgc
     2641 aatatacact tttgttacgc gtacgttagg ttccgccgta caggtattgg ttttgctggc
     2701 aatgggactg gtgatttatt tagccaccag taaatacggc aatattcgtc ttggcgaagg
     2761 aaaaccggaa tacagcacgc tctcctggct gtttatgttt atttgtgccg gtttaggttc
     2821 ttctacgctt tattgggggg ttgctgaatg ggcctattat tatcaaacac ctggattaaa
     2881 tatcgcaccg cgttcacaac aggcactcga atttagcgtt ccctactctt tcttccactg
     2941 gggcatcagc gcctgggcaa cttatacgct ggcctcatta atcatggctt atcactttca
     3001 tgtgcggaaa aacaaaggtc tgagcctttc cggcattatt gctgctatta ccggcgttcg
     3061 cccgcaaggc ccatggggaa aactggttga tttgatgttc ctgatcgcca ctgtcggcgc
     3121 actgactatt tcccttgttg tcaccgcagc aacctttact cgtggacttt ccgcactgac
     3181 aggtttaccc gacaacttca ccgtgcaggc atttgtgatc ctgctttctg gcggcatttt
     3241 ttgcctaagc tcgtggattg gtatcaacaa cggtttgcaa cgtctgagca aaatggttgg
     3301 ctggggcgcg ttcctgctgc cattactggt gctgattgtc ggcccaaccg aatttattac
     3361 caacagcatc atcaatgcca tcggcctgac cacgcaaaac ttcctgcaaa tgagcttatt
     3421 caccgatccg cttggcgatg gttcatttac ccgcaactgg accgttttct actggctgtg
     3481 gtggatctca tacacccctg gcgtagcaat gtttgtcacc cgcgtttccc gcggtcgtaa
     3541 gattaaagaa gttatctggg gactgatcct cggcagcacc gtcggttgct ggttcttctt
     3601 cggcgtaatg gaaagctatg ccattcatca gtttatcaat ggcgtaatca acgtcccaca
     3661 ggtgctggaa acactgggcg gcgaaacagc tgtacagcaa gttctgatgt cgttgccagc
     3721 cggtaaattg ttcctcgccg catacctggg cgtgatgatt attttccttg cctcgcatat
     3781 ggatgcagtg gcctacacca tggcggcgac cagtacgcgt aatctccagg aaggtgacga
     3841 tcctgaccgt gggctgcgtc ttttctggtg cgtggtgatc actctgatcc cgctttccat
     3901 cttgtttacc ggtgcttcgc tggaaacgat gaaaaccacc gtcgtgctca cagcccttcc
     3961 cttcctcgtc attttactgg tgaaagtcgg cggatttatt cgctggctga aacaggatta
     4021 cgccgacatt ccggctcatc aagttgaaca ttatctcccg cagacaccgg ttgaagccct
     4081 ggaaaaaaca ccagtgatcc ctgcgggaac cgtattcaaa ggcgacaact gagcgccatc
     4141 atcctaacga taaaggtatc cctatgagca atctgagccc tgactttgta ctacccgaaa
     4201 atttttgcgc taacccgcaa gaggcgtgga ccattcctgc ccgtttttat accgatcaga
     4261 acgcgtttga acacgaaaaa gagaacgtct tcgccaaaag ctggatttgc gtcgctcaca
     4321 gcagcgaact ggcgaatgcc aatgattatg tgacgcgtga gatcattggc gaaagcatcg
     4381 tgctggtacg cggtcgtgat aaggttttgc gcgcgttcta taacgtgtgt ccgcaccgtg
     4441 gtcatcagtt gttgagcggt gaaggaaaag caaaaaatgt gattacctgc ccgtatcacg
     4501 catgggcatt caaactcgat ggcaatctgg cccatgcacg taactgcgaa aacgtcgcca
     4561 atttcgatag cgacaaagcg caactggttc cggtgcgtct ggaagaatat gccggattcg
     4621 tcttcatcaa catggacccc aacgccacca gcgtagaaga tcagttaccc ggtctgggcg
     4681 cgaaagtgct ggaagcctgc ccggaagtcc acgatctgaa actggcggcc cgctttacca
     4741 cccgcacgtc tgccaactgg aagaacattg tcgataacta tctcgagtgc tatcactgtg
     4801 gtccggcgca tccaggtttc tccgactccg tacaggttga tcgttactgg cacaccatgc
     4861 acggtaactg gacgctgcaa tacggtttcg ccaaaccgtc cgaacagtcg tttaaatttg
     4921 aagagggtac ggatgcggca ttccacggtt tctggctgtg gccgtgcacg atgctgaacg
     4981 tcaccccgat caaagggatg atgacggtca tttatgaatt cccggtggat tctgaaacta
     5041 ccctgcaaaa ctacgatatt tacttcacca atgaagagtt aaccgacgag caaaaatcgc
     5101 tgattgagtg gtatcgcgat gtgttccgtc cggaagattt acgtctggtt gaaagcgtac
     5161 agaaagggct gaaatcgcgt ggctatcgtg gtcaggggcg catcatggcc gacagtagcg
     5221 gtagtggcat ttccgaacat ggtatcgccc atttccataa tctgctggcg caggtgttta
     5281 aggactaatg acatcggcgg cggtattttc cgctgctggg ctgatttttg atggagtaca
     5341 gcaatgtcag actatcaaat gtttgaagta caggtgagcc aggttgaacc ccttaccgaa
     5401 caggtgaaac gcttcacgct ggtggcaacc gatggcaaac cgctgcctgc gttcaccgga
     5461 ggaagtcacg tcattgtgca gatgagcgat ggtgataacc agtacagcaa tgcgtattca
     5521 ctactgagtt cgccgcatga cacctcttgt tatcagattg ccgttcggct ggaggaaaac
     5581 tcgcgcggcg gttcccgctt tttgcatcag caggtaaaag tgggcaatcg gttaacgatt
     5641 tcaacgccta ataacctgtt tgcgctaatt ccctcagcca gaaagcatct gtttatcgcg
     5701 ggcggtattg gtatcacccc tttcctgtcg cacatggcag agctgcaaca cagcgacgtc
     5761 gactggcagc tacattactg ctcgcgaaat ccagaaagtt gcgcatttcg tgatgagcta
     5821 gtccagcatc cgcaggctga gaaagttcac ttgcatcact catcaaccgg aacacgactg
     5881 gaattagcgc gattattggc ggatatcgaa cctggcacac acgtttatac ctgtggtccc
     5941 gaggcgctaa atgaagcggt aagaagtgaa gctgcgcgtc tggacatcgc cgccgatacg
     6001 ctgcactttg agcaatttgc tatcgaagac aaaaccggcg atgcctttac cctggtgctt
     6061 gcccgttccg gaaaagagtt tgtggtgccg gaagagatga ctattttgca ggttattgaa
     6121 aataataaag ccgcgaaagt ggaatgttta tgtcgtgaag gggtatgcgg aacctgcgaa
     6181 acagcaatac tggaaggtga agctgaccat cgggatcagt attttagcga tgaagagcgt
     6241 gccagccagc aaagtatgtt gatctgttgt tcgcgtgcga agggtaaacg cctggtgttg
     6301 gatttgtagt ttgccaaagc cggatgtggc gctgagcgcg cccagtccgg cttcggaaga
     6361 ttttactgcg gatattcctg caataaattg tgtaatgctt ccgccatcag ctcaccacgc
     6421 cagccggaaa tcagctccgg caaattgttc tgcggtttca gtttccagtg ccagttcagc
     6481 agttggttga tttgccgacg cgatgccagc aattcggcgc tgatcttatg cgtttcgctc
     6541 acgtcagtaa tcagcgactt aatcgcttta aacgctttac gataaccagg catgtccatc
     6601 aggttaagca tcggctgcgg taaggcctct tccggcaatg tctgcgcttt ttccaccagc
     6661 gtcagcagcg ttttaccgtg aaagcggatt tcgctaccgg ataaacccag gctgtccagt
     6721 tcgcctaaac ttcccggcat ataacgcgcg accgaccaca aatgctcttc acgcacgaca
     6781 aagttcaccg ccagatcacg ctctcgcgcc ttgcgcagtc gccagtcggc taacagttgc
     6841 agacaggcca gttggcgtgt gcgtaactgc caggcattgg tgatatcacg ccaggcatct
     6901 tccggcgcaa cgacttcctg acgacgcatt tgcatcaggc ggcattcatc cagcgccgca
     6961 ggtagccagc cggaggcctc cgtttctacc ataagcttgg cggtgatcgg taacagatac
     7021 cagacatccg ccgctgcgta ttcacactga cgttcggtca gcggtctggc cagccagtcg
     7081 gtgcgcgatt cactcttgtc cagcgtaacg ccggaatact cttccaccat ggaagcgaaa
     7141 ccccatgaca tcgggcgtcc gcagaaggca gaaaggattt gcgtgtcaat caagggttgt
     7201 ggtaattcgc caaagacatt gaggaacact tccagatctt cactgcctgc atggagaaat
     7261 tttgtgatgg acggatcgcg caggatcgct ttcagcggtg accagtcggt gatcccgaga
     7321 ggatcaatta gcgccagatg ctcgccatcg aaaagttgaa tcaaccccag ctgcgggtaa
     7381 taagtgcgcg tacgaacaaa ttcagtatcc agggctatcg ccggaaaggc acggacggct
     7441 tcacacaaag aagccagcgc atcgtccgtg gtaatcattt ggtaattcaa attgttttct
     7501 ctttagtggg cgtcaaaaaa acgccggatt aaccggcgtc tgacgactga cttaacgctc
     7561 aggctttatt gtccactttg ccgcgcgctt cgtcacgtaa ttctcgtcgc aaaatttttc
     7621 cgacgttaga tttcggtaac tcatcacgaa actccaccag cttcggtact ttgtatcccg
     7681 tgagctgacg gcggcaaaaa gtcaccagtg actcttcggt aagcgatgga gcttttttca
     7741 ctacgaagat tttcaccgct tcaccactgg agccggaagg tacgccaaca gccgcgactt
     7801 cctgtacgcc aggatgctgc atgacgacat cttcaatctc gttgggatag acgttaaaac
     7861 cggaaaccag aatcatgtct tttttacgat cgacaatgcg caggaatcct tcttcatcca
     7921 ttaccgcgat gtcgccggtg tgtaaccagc catttttgat gatttcatcg gtagcatcgg
     7981 gacgctgcca gtaacccagc atcacctgcg gtcctttgac acaaagctca cccggttgac
     8041 ctggtggtac ttcattatca tcatcatcca ccagtttggc ttccgtcgac ggcaccggca
     8101 aaccgatgct accactatga taatcaatat catatgggtt aacgctgacc agcggcgcac
     8161 actcggtaag gccatagcct tccagcagat actgtccggt cagtttcacc caacgctctg
     8221 ccaccacttg ctgcactggc atcccaccgc ctgcggaaag atgcagactg gagaaatcca
     8281 gctgctggaa ctctttattg ttcagcaacg cattgaacaa ggtgttaacg ccagtgatag
     8341 cggtaaacgg atatttcgct aactctttta ccaaccctgg aatatcacgc gggttagtga
     8401 taagcaggtt ctgcccaccc agttcgataa acagcaggca gttaatggtc agggcaaaaa
     8461 tgtgatacag cggcagtgcc gttactacca gttctttacc tggatgcagc aacggcccat
     8521 aggtggcgtt gacctgttcc aggttcgcca gcatattgcg gtgagtcagc atcgcgcctt
     8581 tcgccacacc tgtggtgccg ccggtgtatt gcaggaaggc taaatcttcc ggcaccagtt
     8641 cgggtttgac gtactgcatc cggtagccgt tatgcagtgc gctacgaaat gaaatggcat
     8701 ctggcagatg gtatttcggc accaaacgct tgatgtattt aacaacgaaa ttgactaccg
     8761 tgccttttgc cgtagatagc tgatcgccca tacgggtcag aattacgtgc tgaacggcgg
     8821 ttttatcaac cactttttcc agtgtgtgag caaagttaga cacgataaca accgccgatg
     8881 cgccgctatc gttaagctga tgctcaagct cacgcggggt atacaacggg ttaacgttta
     8941 cgacgatcat cccggcacgc aaaatgccaa acagcgccac cggatattgc aataaattag
     9001 gcatcatcaa cgcaacgcga tcgcctttct tcagccccac cccttgttgc aaataagcgg
     9061 caaacgcgcg actgcgttct tccagcttgc ggaaggtcat cacctccccc atattcacaa
     9121 acgcaggctg atcggcgtag cgcgcgaccg actgctcaaa catatctacc agagattgat
     9181 aacggtcagg gttgatctcc gtcggaacgt ccgcgggata acggttaagc caaaccttct
     9241 tcaattcttc acctctaaaa tgcgtgttcg tcgtcatcgc aaccccaaat gatatacata
     9301 ccgttaacat aatattaact catcatacca gcttgataat tacccaacga aaaggttgcg
     9361 aagcgcgtca ctatttattt ttatctttac cgtaagaatg cagaaacagc ggaccagccg
     9421 ctgtttcttt ttctttaaaa acaagcaatt attcagttac aactgtttgt actctcgcgg
     9481 gaccgggatt ataccagccc catccgccgt agccataggg ccagccacga ccgccataaa
     9541 accatggatc aatcggctga ggcggcataa tcacctgctg ggttaaatgc caacgtttgt
     9601 aacccgttac ttgcatcacc ataaatttat agggcgtatt gccgattttg ccgtcaaccg
     9661 caccagtgat tggcccgact accgtaacca gttgtccacg gaaatccacc gggtccagaa
     9721 aaccgttcac atcggcataa atgcgaccgc gagaaggttc tcccagcgtc ggtctggctc
     9781 cgctgtccag cggtacggta gcaatttcca ggcgggtttt cccttgctgg ttttgtaccg
     9841 caaccacttt gccaccaaag cgtgcctcct gaccaacgta cagctgcggc gcactcatca
     9901 cccgaactaa atcttgttgc ggcgtgggac tgcggccttt aatggcgtcc ggcacagtga
     9961 cacaaccgct cagcattagc gcaaacgtac ctgccagtat gcctttgata acattctttt
    10021 gaaccgccat gatgcgactc ctttttttct cagagcatac tcttaagatt cattctttgc
    10081 ccggaagttt cttccatgcg acgttgttac gtaaataaac cggttcggca tgttccaccg
    10141 ccaccgtttt accctcggca aatatctgac acgcaatcgg cagcatatct tccgtcgctg
    10201 gcagtaaaac ttctccgtcg cgcaaaacca gcccgctctc tttaccgaga tccggccagg
    10261 cttgccagcc cgtccctacc gttacccatt cgccggaaag ctgttgcatt cgttcatgaa
    10321 cgagttcggg tttgagtacg gcttcggttt cttcaccgcg ccagataccg ttttcatcac
    10381 gctgatattc ggcccagtaa acttcgccca tccgcgcatc aatggcagcc agcacgcggg
    10441 ttgcgccgtt tttgcgccac gccccttgcg ccattgtcat tagcgtggag acgccaatca
    10501 tcggcagctc tgcgccaagt gccagccctt gcgcaatgcc aataccaatg cgcacgccgg
    10561 taaagctacc ggggccgcgc ccgtaagcca gagcgttaat atcagtcagg gaagttccgc
    10621 tggtggtcag gatatcctgc accatcggta agattcgttg agtatgttca cgagggcaaa
    10681 gctcaaaatg agcgttgaca gtaccgtcgt tccacagggc gacagagcag gcctctgtcg
    10741 cggtatcgat agccagaatt cgcatgggtc ttcgtgctta gatcaataaa aaggcgcgca
    10801 tcataccata ctccgtaaca aattacctgg aggatggtat cgcaaggaaa cgaaccgcac
    10861 gggcaatgtc acgggtgcgc ggcgcgggcg gcagactggc gagaaacgtc gcgccgtaag
    10921 ggcgcatcac cagccgattg tcacaaatca ccaaaacccc gcgatcgtcg gcgtcgcgaa
    10981 tcagtcgccc taccccctgc ttgagagtaa tcaccgcatc cggcagttgt acttcatcga
    11041 acgggtcgcc accgcgcaaa cggcaatctt ccatgcgcgc ttttaacagc gggtcatccg
    11101 gtgaggtaaa cggcaacttg tcgataatca ccaatgacaa tgtatcgcca cgcacgtcca
    11161 ccccttccca gaaactactg gttgccacaa gaagcgcgtt accggcgctg acaaattgct
    11221 gcaacagttg ccctttgctg gtttccccct gcaacaaaac gggaagcgtc atggtagcgc
    11281 ggaactgctc ggccagatca cgcatcatgg cgtgcgaggt acaaagcata aaacaacgac
    11341 cgttgttagc ttcgatgatc ggtcgcagca ttgccgctaa ctggcgagca gaacctggct
    11401 ggttggtttg cggcagattg cgcggcacac agagtaacgc ctggcggctg taatcaaacg
    11461 ggcttggcaa tagcaacgac tccgcctgtt ctatcccaag ccgcgaggtg aaatgatgca
    11521 gatcgtcgtt caccgacagc gttgctgagg tgaagatcca gctaccaggc ttttgcgcca
    11581 ttaactcttt gaatttatcc gccacgctga gcggcgtgag agccagagta aaatggcgcg
    11641 aagtgcattc gtaccagtag ctgtagcccg gctgattgat ctcttttagc cgcttcagcc
    11701 gtgtgcgata caacgtagcg cgctcaaatg ccgcatccag caaggcggaa cgccccagtg
    11761 acagtttcgc cacgtcataa caaagttcca gggtgtcatc gagcagtaaa aatgcccgct
    11821 gaatttgcgg attagctaac agctcacgca ggttaccgcg ataacctggc tcaccgagtt
    11881 gcagacgaaa atcctgcgca ctctgggcaa gacgatcagc gcacttttgt aactgctggg
    11941 tgtcttttaa ttcggtgcgg taggcgatgg tgatgtcttt tgccaggtcg agcagttgtc
    12001 gactggagag tgactgacca aaatactggc tggcaatgtc cggtagctgg tgggcttcgt
    12061 cgaagatcat gacgtccgct tccgggatca gttcgccaaa tccactctct ttaaccacca
    12121 tatccgccag aaagagatga tggtttacca ccaccacatc ggcgtccatc gcttttttac
    12181 gtgctttgac cacaaagcaa tctttataca tcgggcagtc gctgccaaga cagttgtcgt
    12241 tggtgctggt aaccagcggc cacgcctgtg aatcttccgc cacgctgacg caggtgctga
    12301 tatcaccatc gactgtttga ttagaccagg agcgcagcag gatcacatcg cttaagattt
    12361 gtaccggcag atcgcccccc gccagcgcct gctgttcgag acgttcgagg cagaggtagt
    12421 ttgagcgccc tttcagcagc gccacgttgc ccgtatattt caatgccttt gagactgttg
    12481 gcaaatcgcg gctgtagagc tgatcctgca acgcttttga gccggtcgag ataatgactt
    12541 tctttttcgc ccgcagcgca ggagccaggt aagcgtaggt tttgcccgta ccggttcctg
    12601 cttccaccac cagcggctgg cctttttcta tcgcctgggt gacggctacc gccatctgtc
    12661 gctgtggttc tcgcggctta aagcctggta tcgctttcgc cagctgaccg tctggtgcaa
    12721 aatcgtccgt cacactaccc cctgttgatt tgaacgggga ttatgtcagg atgagggcgc
    12781 tttcgccagt tgaagtggtg acggcaacct cacattgtgg cagtctttgc agcacgaaaa
    12841 tggaagtata atgaggacaa aatgatgact atcgttcgta tcgatgctga agcccgctgg
    12901 tctgatgtag taatccacaa caacacgctc tactacactg gtgtaccgga aaacctcgac
    12961 gccgatgctt ttgagcaaac cgccaacacg ctggcgcaga ttgacgccgt gctggaaaaa
    13021 cagggcagca ataaatcgag cattctggat gccaccattt tcctggctga taaaaacgac
    13081 ttcgcggcga tgaataaagc gtgggatgcc tgggttgtgg cgggtcatgc gccggtgcgc
    13141 tgcacggtgc aagcggggct gatgaacccg aagtataaag ttgaaattaa gattgtggct
    13201 gcggtgtaag ctttatcgaa gcaaaataag tcagacgatc atttatcgat aatactggtc
    13261 ggttttacat aaatcgacca gagattaaga tattactgtt gatgctcctg ctaattcatt
    13321 atttattttt ataatttcaa ttttagctat aaagcta
//
LOCUS       DAJVUP010000114        13097 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.114, whole genome shotgun sequence.
ACCESSION   DAJVUP010000114 DAJVUP010000000
VERSION     DAJVUP010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.114"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            176..1150
                     /gene="cysB"
                     /locus_tag="OQQ75_002958"
     CDS             176..1150
                     /gene="cysB"
                     /locus_tag="OQQ75_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HCS1977205.1"
                     /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL
                     GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT
                     QARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM
                     LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP
                     RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRR
                     STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK"
     gene            1445..1609
                     /locus_tag="OQQ75_002959"
     CDS             1445..1609
                     /locus_tag="OQQ75_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmiA family putative membrane protein"
                     /protein_id="HCS1977206.1"
                     /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV
                     VALLIWKVWG"
     gene            1612..1779
                     /locus_tag="OQQ75_002960"
     CDS             1612..1779
                     /locus_tag="OQQ75_002960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977207.1"
                     /translation="MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFI
                     ELFAEDDQPKQ"
     gene            1893..1988
                     /locus_tag="OQQ75_002961"
     CDS             1893..1988
                     /locus_tag="OQQ75_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977208.1"
                     /translation="MINTNMKYWSWMGAFSLSMLFWAELLWIITH"
     gene            2152..4827
                     /gene="acnA"
                     /locus_tag="OQQ75_002962"
                     /pseudo
     CDS             2152..4827
                     /gene="acnA"
                     /locus_tag="OQQ75_002962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415792.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
     gene            complement(4891..5481)
                     /gene="ribA"
                     /locus_tag="OQQ75_002963"
     CDS             complement(4891..5481)
                     /gene="ribA"
                     /locus_tag="OQQ75_002963"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HCS1977209.1"
                     /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT
                     PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI
                     RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE
                     AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK"
     gene            5651..6415
                     /gene="pgpB"
                     /locus_tag="OQQ75_002964"
     CDS             5651..6415
                     /gene="pgpB"
                     /locus_tag="OQQ75_002964"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase B"
                     /protein_id="HCS1977210.1"
                     /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV
                     TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE
                     PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP
                     SGHTMFAASWALLAVGLLWPRRRTLTIAILLLWATGVMGSRLLLGMHWPRDLVVATLI
                     SWALVAVATWLAQRICGPLTPPAEENREIAQREQES"
     gene            6564..6872
                     /gene="lapA"
                     /locus_tag="OQQ75_002965"
     CDS             6564..6872
                     /gene="lapA"
                     /locus_tag="OQQ75_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA"
                     /protein_id="HCS1977211.1"
                     /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL
                     LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE
                     "
     gene            6879..8048
                     /gene="lapB"
                     /locus_tag="OQQ75_002966"
     CDS             6879..8048
                     /gene="lapB"
                     /locus_tag="OQQ75_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HCS1977212.1"
                     /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN
                     FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT
                     YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
                     IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNRARVSI
                     MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV
                     EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA
                     KESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL"
     gene            8241..8978
                     /gene="pyrF"
                     /locus_tag="OQQ75_002967"
     CDS             8241..8978
                     /gene="pyrF"
                     /locus_tag="OQQ75_002967"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HCS1977213.1"
                     /translation="MTLTASSSSRAVTNSPVVVALDYHNRDDALSFVDKIDPRDCRLK
                     VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG
                     GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLADLGVTLSPADYAERLAALTQK
                     CGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSDAGDQRRIMTPEQALAAGVDYM
                     VIGRPVTQSVDPAQTLKAINASLQRSA"
     gene            8978..9304
                     /gene="yciH"
                     /locus_tag="OQQ75_002968"
     CDS             8978..9304
                     /gene="yciH"
                     /locus_tag="OQQ75_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415798.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HCS1977214.1"
                     /translation="MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKG
                     KGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK
                     VKLAGG"
     gene            complement(9430..9648)
                     /gene="osmB"
                     /locus_tag="OQQ75_002969"
     CDS             complement(9430..9648)
                     /gene="osmB"
                     /locus_tag="OQQ75_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmB"
                     /protein_id="HCS1977215.1"
                     /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG
                     GAVLTDGSTLGTLGGAAVGGVIGHQVGK"
     gene            complement(9917..10666)
                     /locus_tag="OQQ75_002970"
     CDS             complement(9917..10666)
                     /locus_tag="OQQ75_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1977216.1"
                     /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL
                     SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA
                     RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
                     SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVE
                     RFNRVITDSKIRASDLMHLEHSKLTVHVVDI"
     gene            complement(10756..10929)
                     /locus_tag="OQQ75_002971"
     CDS             complement(10756..10929)
                     /locus_tag="OQQ75_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977217.1"
                     /translation="MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVA
                     ESTPDIPKAPWEI"
     gene            complement(11076..13061)
                     /gene="pdeR"
                     /locus_tag="OQQ75_002972"
     CDS             complement(11076..13061)
                     /gene="pdeR"
                     /locus_tag="OQQ75_002972"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1977218.1"
                     /translation="MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTL
                     QLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAV
                     ARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLF
                     MSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKSEIFLIC
                     SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDN
                     FKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMA
                     SRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF
                     CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPER
                     GLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQT
                     IFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGY
                     SSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKE
                     DAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA"
BASE COUNT         3333 a         3083 c         3294 g         3387 t
ORIGIN      
        1 tcgcgaaagc ggcccttttt tattgcatat tattttttct tcacacctat acactaaggc
       61 tataaatgat atagtggtta tagttagcac cttttttatt attaaatcgt attagtcacc
      121 cgccaggtgt gacgaaaaaa cgatgttctg atggcgtcta agtggatggt ttaacatgaa
      181 attacaacaa cttcgctata ttgttgaggt ggtcaatcat aacctgaatg tctcatcaac
      241 agcggaagga ctttacacat cacaacccgg gatcagtaaa caagtcagaa tgctggaaga
      301 cgagctaggc attcaaattt tttcccgaag cggcaagcac ctgacgcagg taacgccagc
      361 agggcaagaa ataattcgta tcgctcgcga agtcctgtcg aaagtcgatg ccataaaatc
      421 ggttgccgga gagcacacct ggccggataa aggctcactg tatatcgcca ccacgcatac
      481 ccaggcacgc tacgcattac caaacgtcat caaaggcttt attgagcgtt atcctcgcgt
      541 ttctttgcat atgcaccagg gctcgccgac acaaattgct gatgccgtct ctaaaggcaa
      601 tgccgatttc gctatcgcca cagaagcgct gcatctgtat gaagatttag tgatgttacc
      661 gtgctaccac tggaatcggg ctattgtagt cactccggat cacccgctgg caggcaaaaa
      721 agccattacc attgaagaac tggcgcaata tccgttggtg acatatacct tcggctttac
      781 cggacgttca gaactggata ctgcctttaa ccgcgcaggg ttaacgccgc gtatcgtttt
      841 cacggcaacg gatgctgacg tcattaaaac ttacgtccgg ttagggctgg gggtaggggt
      901 cattgccagc atggcggtgg atccggtcgc cgatccggac cttgtgcgcg ttgatgctca
      961 cgatatcttc agccacagta caaccaaaat tggttttcgc cgtagtactt ttttgcgcag
     1021 ttatatgtat gatttcattc agcgttttgc accgcattta acgcgtgatg tcgttgatgc
     1081 ggctgtcgca ttgcgctcta atgaagaaat tgaggtcatg tttaaagata taaaactgcc
     1141 ggaaaaataa tttcttgcgt tattttcggc accttttatg tagcgaaggt gccggaatat
     1201 attctctttt gttacttatt tttataccgt gcacaatatt tttatccctc atatttatag
     1261 ggtaaattac ctgtaaagta gtgtctaatt acccgcctcg caaattccag ttttcaaata
     1321 tctatttcag gtcaaaagat tgaattattc actggagacg attcgtaaat tcgctggatt
     1381 tttgactaaa gtttctttag gatttgtctc atcgtatgat taattacacc aatcgttcaa
     1441 cgtcttgctg ataagtgatg gcgattatat gaggttagca atgccttctg gaaatcagga
     1501 accccgccgc gatcctgaat taaaacgtaa agcctggctg gcggtttttc ttggttctgc
     1561 acttttctgg gtggttgtcg cactgctgat ttggaaagtg tggggataac tatggtcggt
     1621 caggagcaac tggagtcgtc accattatgc cagcatagtg acaatgaaac agaaacgaaa
     1681 cgggaatgtt ccgtcgttat tccagatgac tggcaactaa catcgcagca gcaagccttt
     1741 atagaactgt ttgctgaaga tgatcagccg aaacaataat tatcatcatt cttattaccc
     1801 atttttaatg aattaaaggg cttttaatac accgcagcaa taacagcttg agttatctca
     1861 acacaaaata ataaccgtta agggtgtagc ctatgatcaa cacaaatatg aaatattggt
     1921 cctggatggg cgcgttttct ctgtcgatgc tcttctgggc cgaactcctc tggatcatta
     1981 ctcactgatc cttgaccccg ctgcggcggg gttgtcattt gctttgccac aaggtttctc
     2041 ctcttttatc aatttgggtt gttatcaaat cgttacgcga tgtttgtgtt atctttaata
     2101 ttcaccctga agagaatcag ggcttcgcaa ccctgtcatt aaggaggagc tatgtcgtca
     2161 accctacgag aagccagtaa ggacacgttg caggccaaag ataaaactta ccactactac
     2221 agcctgccgc ttgctgctaa atcactgggc gatatcaccc gtctacccaa gtcactcaaa
     2281 gttttgctcg aaaacctgct gcgctggcag gatggtaact cggttaccga agaggatatc
     2341 cacgcgctgg caggatggct gaaaaatgcc catgctgacc gtgaaattgc ctaccgcccg
     2401 gcaagggtgc tgatgtagga ctttaccggc gtacctgccg ttgttgatct ggcggcaatg
     2461 cgcgaagcgg ttaaacgcct cggcggcgat actgcaaagg ttaacccgct ctcaccggtc
     2521 gacctggtca ttgaccactc ggtgaccgtc gatcgttttg gtgatgatga ggcatttgaa
     2581 gaaaacgtac gcctggaaat ggagcgcaac cacgaacgtt atgtgttcct gaaatgggga
     2641 aagcaagcgt tcagtcggtt tagcgtcgtg ccgccaggca caggcatttg ccatcaggtt
     2701 aacctcgaat atctcggcaa agcagtgtgg agtgaattgc aggacggtga atggattgct
     2761 tatccggata cactcgttgg tactgactcg cacaccacta tgatcaacgg ccttggcgtg
     2821 ctggggtggg gcgtgggtgg gatcgaagca gaagccgcaa tgttaggcca gccggtttcc
     2881 atgcttatcc cggacgtagt gggctttaaa cttaccggta aattacgtga aggtattacc
     2941 gccacagacc tggttctcac tgttacccaa atgctgcgca aacatggcgt ggtggggaaa
     3001 ttcgtcgaat tttatggtga tggtctggat tcactaccgc tggcggatcg cgccaccatt
     3061 gccaatatgt cgccagaata tggtgccacc tgtggcttct tcccaatcga tgctgtaacc
     3121 ctcgattaca tgcgtttaag cgggcgcagc gaagatcagg ttgagttggt cgaaaaatat
     3181 gccaaagcgc agggcatgtg gcgtaacccg ggcgatgaac cgatttttac cagtacgtta
     3241 gaactggata tgaatgacgt tgaagcgagc ctggcagggc caaaacgccc acaggatcgc
     3301 gttgcactgc ccgatgtacc aaaagcattt gccgccagta acgaactgga agtgaatgcc
     3361 acgcataaag atcgccagcc ggtcgattat gttatgaacg gacatcagta tcagttacct
     3421 gatggcgctg tggtcattgc tgcgataacc tcgtgcacca acacctctaa cccaagtgtg
     3481 ctgatggccg caggcttgct ggcgaaaaaa gccgtaactc tgggcctcaa gcggcaaccg
     3541 tgggtcaaag cgtcgctggc accgggttcg aaagtcgttt ctgattatct ggcaaaagcg
     3601 aaactgacac cgtatctcga cgaactgggg tttaaccttg tgggatacgg ttgtaccacc
     3661 tgtattggta actctgggcc gctgcccgat cctatcgaaa cggcaatcaa aaaaggcgat
     3721 ttaaccgtcg gtgcggtgct gtccggcaac cgtaactttg aaggccgtat ccatccgctg
     3781 gttaaaacta actggctggc ctcgccgccg ctggtggttg cctatgcgct ggcgggaaat
     3841 atgaatatca acctggctgc tgagcctatt ggtcatgatc gtaaaggcga cccggtttat
     3901 ctgaaagata tctggccatc ggcacaggaa attgcccgtg cggtagaaca agtctccaca
     3961 gaaatgttcc gtaaagagta cgcagaagtt tttgaaggca cagcagagtg gaaggaaatt
     4021 aacgtcacac gatccgatac ctacggttgg caggaggatt caacctatat tcgcttatcg
     4081 cctttctttg atgaaatgca ggcaacacca gcacctgtgg aagatattca cggtgcgcgg
     4141 atcctcgcaa tgctggggga ttcagtcacc actgaccata tctctccggc gggcagtatt
     4201 aagcccgaca gcccggcggg tcgatatcta caaggtcggg gtgttgagcg aaaagacttt
     4261 aactcctacg gttcgcggcg tggtaaccat gaagtgatga tgcgcggcac cttcgccaat
     4321 attcgcatcc gtaatgaaat ggtgcctggc gttgaagggg ggatgacgcg gcatttacct
     4381 gacagcgatg ttgtctctat ctatgatgcc gcgatgcgct ataagcagga gcaaacgccg
     4441 ctggcggtga ttgccgggaa agagtatgga tcaggctcca gccgtgactg gacggcaaaa
     4501 ggtccgcgtc tgcttggtat tcgtgtggtg attgccgaat cgtttgaacg aattcaccgt
     4561 tcgaatttaa ttggcatggg catcttgccg ctggaatttc cgcaaggcgt gacgcgtaaa
     4621 acgttagggc taaccgggga agagaagatt gatattggcg acctgcaaaa tctacaaccc
     4681 ggcgcgacgg ttccggtgac gcttacgcgc gcggatggta gccaggaagt cgtaccctgc
     4741 cgttgtcgta tcgacaccgc gacggagttg acctactacc agaacgacgg cattttgcat
     4801 tatgtcattc gtaatatgct gaagtaacaa gtatttgctt gccggttatt ttgcttccgg
     4861 caagcaaatt aattccacaa tgcgagaggg ttatttgttc agcaaatgac ccattttctc
     4921 ggctttggta tcgagataat gttcgttatt ggggttacga cctacaatca atggtacgcg
     4981 ttcaacaata ttaatccctg cttcggtcag aatttcgact tttttcgggt tattggttaa
     5041 caagcggact tcattgacgc caaggagttt gaacatatca gcgcaaagag tgaagtcgcg
     5101 ctcatcagcg gcgaagccta actggtggtt agcctctacg gtatcgtaac cttgatcctg
     5161 cagtgcgtaa gcgcggattt tattcagcag accaatgtta cgaccttcct gacggtgata
     5221 cagcaaaata ccacggcctt cctcggcaat ttgcgtcaat gccgcttcga gctggaagcc
     5281 acaatcgcag cgcaagctga acagggcgtc accggtcaga cattcggaat ggacgcgcgc
     5341 aagtaccggg gtatgcccgg aaatatcgcc atagactagc gcgacatgat cgtgtccggt
     5401 tgccagttct tcaaatccca ccatcaggaa atcgccccat ggggttggca gtttggcttc
     5461 tgccacacgt ttaagctgca tgaaattctc cagataatgc tggttctgta ttggcttatt
     5521 ttgccataac gagaaggggt tcacctaatc acgacgcgtc gatcgttcac ggaatggcac
     5581 aaatctgtca atttttcctg gaactggcgt tttcagttat gattgtggga cttatcaaaa
     5641 aggagaggcc atgcgttcga ttgccagacg taccgcagtg ggagctgcac tattgcttgt
     5701 catgccagta gccgtatgga tttctggctg gcgttggcaa cctggagaac aaagttggct
     5761 actaaaagcg gctttttggg ttactgaaac tgtcacccag ccctggggcg tcattacaca
     5821 tttgatttta ttcggctggt ttctctggtg tctgcgtttt cgcattaagg ctgcctttgt
     5881 attatttgcc attctggcgg ccgcaatcct tgtgggacaa ggcgttaaat cctggatcaa
     5941 agacaaagtc caggaaccac gaccttttgt tatctggctg gaaaaaacac atcatattcc
     6001 ggttgatgag ttctacactt taaagcgagc agaacgcgga aatctagtga aagaacagtt
     6061 ggctgaagag aaaaatatcc cacaatattt gcgttcacac tggcagaaag agacggggtt
     6121 tgcctttcct tccggtcaca cgatgtttgc tgccagttgg gcactgctgg ccgttggttt
     6181 gctgtggccg cgtcggcgaa cgttaaccat tgctatcttg ctgctctggg caacgggagt
     6241 catgggaagc cgcctgctgc tcgggatgca ttggccacgc gatctggtag tagctacatt
     6301 gatttcgtgg gcgctggtgg cggtggcaac gtggcttgcg caacgaattt gtgggccatt
     6361 aacaccacct gcggaagaaa atcgcgaaat agcgcaacga gaacaagaaa gttaacgctg
     6421 gttgattttc cgaatttagc ccttaaatca tcaacaatgc gcgtggatgc catttcgcag
     6481 acggcgcgaa aatggtactt taaagggcta ttgcggtaag ttgaccataa tttattcgct
     6541 ctaaccacat aacgggaagt aatgtgaaat atttactcat tttcttactg gtgttagcga
     6601 tcttcgtgat ttcggtcacg ttgggtgcgc agaacgatca acaggtgacg tttaattatc
     6661 tgttagcgca aggggagtac cgtatttcca cattgctggc ggtattgttt gctgcggggt
     6721 ttgctatcgg ttggttgatt tgtggcctgt tctggctgcg agttcgtgtt tccctggcgc
     6781 gcgctgaacg taaaataaag cgactggaaa accagctttc acccgcgact gacgtggctg
     6841 tagtgccgca ctcgtcagcg gcgaaggaat aactttctat gctggagttg ttgtttctgc
     6901 ttttgcctgt agccgctgcc tatggctggt atatgggccg cagaagtgcg caacaaaaca
     6961 agcaagatga agccaaccgc ttgtcgcgtg attacgtagc gggggttaac ttcctgctta
     7021 gtaatcaaca ggataaagcg gtagacctgt ttctcgatat gcttaaagag gatacaggca
     7081 ccgttgaagc ccaccttacg ctcggaaacc tgttccgttc gcgtggcgaa gttgatcgcg
     7141 ctattcgcat ccatcagacc ctaatggaaa gcgcctcgct gacctatgaa cagcgtctgt
     7201 tggcgattca acaactaggg cgtgattaca tggccgccgg gttatacgac cgcgcggaag
     7261 acatgttcaa tcagctgacc gatgaaactg acttccgcat tggcgctctg caacagttgc
     7321 tacaaatcta ccaggctacc agtgagtggc agaaagcaat tgatgttgcc gaacgcctgg
     7381 tgaagctggg taaagataaa cagcgcgtcg aaattgccca tttctactgt gagttagccc
     7441 tgcagcatat ggccagcgac gatctcgatc gtgccatgac cttgctaaaa aaaggggcgg
     7501 cggcagataa aaacagagcc cgcgtatcca tcatgatggg acgcgtgttt atggcgaaag
     7561 gagaatacgc caaagccgtc gaaagtttgc aacgcgtgat atcccaggac agagaactgg
     7621 tcagcgaaac gctggaaatg ttgcaaacct gctatcagca gttgggtaaa actgccgaat
     7681 gggcagaatt cctgcaacgc gcggtggaag agaacaccgg tgccgatgct gaattgatgc
     7741 ttgctgatat catcgaagcg cgcgacggta gtgaggccgc acaggtctat attacgcgcc
     7801 agcttcagcg tcatccgacc atgcgtgtgt tccataagtt aatggattac cacttaaatg
     7861 aagcggaaga agggcgtgcc aaagagagcc tgatggtgct gcgtgacatg gttggcgaaa
     7921 aggtacgtag taagcctcgt tatcgctgcc agaaatgtgg ttttaccgca tacaccctct
     7981 actggcattg tccgtcttgt cgggcctggt caaccattaa accgattcgc ggtcttgatg
     8041 gcctgtaatt tttaaaaaaa tccgacttta gttacaacat gctagttatt gatgttccat
     8101 tgtgctccgg caacgacgga gcagaaaaag cctgccaggg gaaaaatcgc aactgttaat
     8161 tttttatttc cacgggtaga atgctcgccg tttacctgtt tcgcgccact tccggtgccc
     8221 atcatcaaga aggtctggtc atgacgttaa ctgcttcatc ttcttcccgc gctgttacga
     8281 attctcctgt ggttgttgcc cttgattatc ataatcgtga tgacgcgctg tcctttgtcg
     8341 acaagatcga cccacgcgat tgtcgtctga aggtcggcaa agagatgttt acattgtttg
     8401 ggccacagtt tgtgcgcgaa cttcaacagc gtggttttga tatctttctt gacctgaaat
     8461 tccacgatat tcctaacact gcagcgcacg ctgtcgctgc tgcagctgac ttaggcgtgt
     8521 ggatggtgaa tgttcatgcc tctggtgggg cgcgtatgat gaccgcagcg cgtgaggcac
     8581 tggttccgtt tggcaaagat gcaccgcttt tgattgctgt aacagtgttg accagcatgg
     8641 aagctagcga cctggccgat cttggcgtga cactgtcacc tgcagattat gcagaacgtc
     8701 tggcggcact gacgcaaaaa tgtggccttg atggtgtggt gtgttctgct caggaagctg
     8761 tgcgctttaa acaggtattc ggtcaggagt tcaaactggt tacaccgggc attcgtccgc
     8821 aggggagtga tgctggtgac cagcgccgca ttatgacgcc agaacaggcg ttggcggctg
     8881 gtgttgatta tatggtgatt ggtcgcccgg taacgcaatc ggtagatcca gcgcaaacac
     8941 tgaaagcgat caacgcctct ttacagcgga gtgcatgatg agtgattcca acagccgtct
     9001 ggtctactca acggaaaccg gacgtattga tgagccaaaa gcggccccag tacgccctaa
     9061 aggcgatggt gtggtgcgta ttcagcgtca gaccagtgga cgtaaaggta agggcgtttg
     9121 cctgattacc ggtatcgatc tcgatgatgc cgaactgaca aaacttgcag cggaactgaa
     9181 gaaaaaatgc ggctgcggcg gagcagttaa agatggagtt attgaaatcc agggcgataa
     9241 gcgtgattta ttaaaatcac tacttgaagc gaaagggatg aaggtaaaac tcgcaggcgg
     9301 ttaacataaa aagccacgga tatatccgtg gctttcgaat attttactgt gtgtattatt
     9361 cagttatttc gtactgaaca aaatcaagcg tattataatt gcgagtcgat aatcgacatt
     9421 tatttacgat tatttaccga cctggtgacc aataacacca ccgacagctg caccacctaa
     9481 tgtacccaac gtactgccat cggtcagtac tgcaccgcct aatgcccctg cacccgcgcc
     9541 gattgcggtg ttgcggtccc gtttagacca gttagaacag gcactcagag acattgccaa
     9601 agtaattgcc agaacagccg cggtcatttt tttgctcgtt acaaacataa tactctctcc
     9661 tgaatttatg attcacggaa gtaagctctc tataactata atagctaaga ataagcctgg
     9721 tgaaattatt ccgtgaaatc tgctcgcgcg cagggttata tcacgcaggt gataatgact
     9781 tcctgttata tcgctgataa taattttata tcttaagcgt gttaataaca ggtaaatagt
     9841 cttaattatc aaccaggaat catcttagag cggatgattt gccaaactgc aaatcatccg
     9901 tagagaaggg aaatggttaa atgtcaacga cgtgaacggt gagtttactg tgctcaagat
     9961 gcatcagatc gctggcgcgt attttcgaat cggtaatcac gcgattgaat cgctcaacgg
    10021 gaccgatgga gtatgaatgt acagcaccaa atttcgagct gtcagtcagg actatcactt
    10081 cgcactcttt ttccagcacg gcattgacca catcggtacg catcatatcg cgaccggtga
    10141 atccagtttc aggttgccag ccatcaatac caataaatgc tttgctgaaa tgcacctgct
    10201 ggatgcactg gcgtgtcaac gggccaacca tactttcgct ttttttctgg tacacgccac
    10261 cgagcaaaat gacttcacaa ggcgcgtctt tcagcaaatg cgcgatgtag ctgctgaccg
    10321 tgatgatagt gacatttttc ttctgctccc ccagagtccg ggcgagcagg gcattgctgc
    10381 tgccattttc gataaagatg gtttcgcccg gttgaaccag tgacgcggca aactcggcga
    10441 gttcacgctt cagcgtatag ttgctcatca tacgggtttc gacgtcatca ctatcaagcg
    10501 aaactgcaaa gccatgtgca cggcggaggt aactcagttt ttcgagggtg ttgagatcct
    10561 ggcgaatggt aacttcagaa actccagtgg cttttgccag atcggttacg ctaacctgac
    10621 cctggtcaat gaccatctgt agaatagttt gttgtcggga attcatcgct gtaattctta
    10681 taacgttata atactaaata aaaaaatact gacgcgccgg gcatcctcaa ataggaaaac
    10741 ctgaaggcac gattgttaaa tctcccacgg tgccttcggg atgtctggcg tagattcagc
    10801 aacctggcgc aagagttctg ctttaagtat ctcgagatta tggatcgcag agtggtaatc
    10861 gcctgccaca aggatatcta acacaatatc aatacgttcg gcaacgcgct gggcatcaaa
    10921 ttcagacatc aaggacatcc ttatagcaaa agtggaaaat gaataatgca aaaattgccg
    10981 ctaaaagaga agtgtttaac agcaacggct aattatcatc caggaatacg atatataatg
    11041 acgggatata gcgctaagta tatatattca tctacttatg cgcgcttcag atagcgttta
    11101 taccagcgtt cgaaggcgac ggcgggcatc ggtttggcaa acaaaaatcc ttgccgctca
    11161 ttgatcccgt tcttggttaa aaaagcatct tcctttgcac tctctacacc ttcggcgatc
    11221 acctgaagat tcaatgcctg ggccacagcg acgatcgccc ggaccagtga ctgcgagaca
    11281 ggttgtttgt gaatatctcg aacaaaaacc tggtcaagtt tgatggcatc gatcggaaag
    11341 cgcgccagtt gcgaaagtga agagtagccg gtaccaaaat catccagatg cacttgcgca
    11401 cctagttggc taaattgttg aataacagac agtgccagtt catcattctc aatcagacaa
    11461 ctctctgtca gttcaacatc tatagggcag tattcaaaat tgagttcctg gagaacctgt
    11521 ttcagggcgg tgaaaatggt ttgatcggcg agctgacgtg cagaaatatt taccgccact
    11581 cgcaggttta tgcctttatc ccgccacttt gccacctggc gtacgacatc gagaatcacc
    11641 caacggccta aaggcacaat tagccctgac tcttcggcgt aggaaatgaa gtccaacggt
    11701 ggaatcaacc cacgttcagg tgactgccaa cgtactagtg cttccagact gcgcacttcg
    11761 ccacgccagg tgattttcgg ttgatagtga ataaccaact gatcgttttc cagtgcttta
    11821 cgcaagttgg tatccagcca gagatattca aatacccgtt gattcatttc tggggtaaaa
    11881 acgcaaaatt gtcctcgtcc gccttccttc gctgtgtaca ttgctgtgtc ggcgtgacga
    11941 ataatagccg tgctgtctga accatgttcg ggagagagtg caatacctac tgaacagctg
    12001 gtataaactt caattaaacc aatgcgaaag gggagccgta agcgggtcaa aattcgtgat
    12061 gccattgctt ccagcgcgct ttgtgaggtg ttggatgcca gtaccagaaa ctcatcccca
    12121 cctggacgcg ccaacacctg gtcatgttcg agacagctta aaatagccaa tgacacgtcg
    12181 cgtaataact ggtcaccaaa caaatgccca taggcgtcgt tgaccttttt gaaattatcc
    12241 aaatcaagat acacaacccc aactttattg ttatctgcat gattaatagc gtgatcgatt
    12301 aaatcctgca ttgcgttacg attcggcagt ccggtgatac tgtcggtatt tgccagaata
    12361 cgcagtcgct cctgagcgcg gcgctcttcg gtaatgtcgg tgccggaaca gattaaaaaa
    12421 atctcgcttt tgccactgcc gctgtggaca aatttattgc gaaacagaaa cagccgctgg
    12481 cctttacatg ttggtatcca cagttcgact tcatatgcat tgccgcttcg aaaaaataca
    12541 cggttattgc gcctggatgc cgcagcttca cgacggctca taaacagttt aaacacgctt
    12601 tggccaatga cgtcgtgttc tttcaaccca gtgtaatctt cacataaccg attgaagcgt
    12661 tggatattcc cccggctgtc gagaatcact attgcggaat gtgcttcaga aactacctgc
    12721 tcagcaaagg aaagcccgtg tgataaatca cgagcaactg ccggtgtgtc atgccatgca
    12781 gacgcgttgc cagcccattc ccgtttattg atttttcgtc ctaccagatg cacagaaaga
    12841 tcgctctcat cgacggtcag actcatcatc aggctggagg tgatgaccgt catttccctg
    12901 atgcgagcag cctgttcggc agataactgc aaagtacgat caggttctgt ggtttcggtg
    12961 gtagaaaagc gcaaaacatc gctgctttcc gtcaaccgcc agtatggatt gtgcgatccg
    13021 agaaagttgt acaacgttgt ggactcccta acggttttca tgatgcatat cctccggtta
    13081 aataaaagga acaacat
//
LOCUS       DAJVUP010000115        13094 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.115, whole genome shotgun sequence.
ACCESSION   DAJVUP010000115 DAJVUP010000000
VERSION     DAJVUP010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13094
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.115"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            4..1632
                     /locus_tag="OQQ75_002973"
     CDS             4..1632
                     /locus_tag="OQQ75_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001338794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin family protein"
                     /protein_id="HCS1977219.1"
                     /translation="MFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMS
                     GGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIA
                     TAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAED
                     LSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLIQETERRRRERNEVEQDVEV
                     AVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRI
                     LAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQS
                     QAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAE
                     KEAAEMQAAAIVKLAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPA
                     VIEKSVEPMKSIDGIKIIQVDGLNRGSAAGDANTGNVGGGNLAEQALSAALSYRTQAP
                     LIDSLLNEIGVSGGSLAALTSPLTSTTPVAENVE"
     gene            1871..1930
                     /locus_tag="OQQ75_002974"
     CDS             1871..1930
                     /locus_tag="OQQ75_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1977220.1"
                     /translation="MMKLVIILIVLLLVSFAAY"
     gene            2247..2306
                     /gene="ibsE"
                     /locus_tag="OQQ75_002975"
     CDS             2247..2306
                     /gene="ibsE"
                     /locus_tag="OQQ75_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsE"
                     /protein_id="HCS1977221.1"
                     /translation="MMKFVIILVVLLLLSFPTY"
     gene            complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="OQQ75_002976"
     CDS             complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="OQQ75_002976"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HCS1977222.1"
                     /translation="MKVTLSEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN
                     TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP
                     TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASV
                     QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK
                     LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA
                     GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA
                     ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP
                     LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG
                     GEVLVLNFEDGCSTTNIIKKIQQDKKG"
     gene            complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="OQQ75_002977"
     CDS             complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="OQQ75_002977"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HCS1977223.1"
                     /translation="MKPLSSPLQQYWQTVVERLPEPLAEKSLSAQAKSVLTFSDFVQD
                     SVIAHPEWLTELESQSPQADEWQHYAAWLQEALSNVSDEAGLMRELRLFRRRIMVRIA
                     WAQTLALVTEESILQQLSHLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM
                     GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF
                     VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR
                     AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ
                     LIRGGREPSLQSRSLLPTLSVIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT
                     QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE
                     QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLM
                     PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA
                     SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ
                     LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNDREGRG
                     FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFN
                     TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ
                     LTAHFDAVRREIMMLPREGKTLQTEVREMREKMRAHLGNKHRNRFDIKADEGGITDIE
                     FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL
                     ALQELPGHVSEDCFTAERDLVRASWQKWLVEE"
     gene            complement(6770..8071)
                     /gene="ygiF"
                     /locus_tag="OQQ75_002978"
     CDS             complement(6770..8071)
                     /gene="ygiF"
                     /locus_tag="OQQ75_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic triphosphatase"
                     /protein_id="HCS1977224.1"
                     /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP
                     DNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEV
                     WPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELE
                     LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK
                     ADVEQGLEAALELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHTLMLFGGIVPRKA
                     STHLRDLLTQCEATIASAVSAVTAVYSTKTAMAKLALTEWLVSKAWQPFLDAKAQSKM
                     SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQ
                     AWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR"
     gene            8313..8933
                     /locus_tag="OQQ75_002979"
     CDS             8313..8933
                     /locus_tag="OQQ75_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HCS1977225.1"
                     /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHY
                     RLVGTVNAGEEVTLLQTDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQV
                     KTLTDKLTNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASV
                     QLDDKQRTIIMQWFMYGGGVLGLGLLLGLVLPHLIPTRKRKERWMN"
     gene            8997..10235
                     /gene="cca"
                     /locus_tag="OQQ75_002980"
     CDS             8997..10235
                     /gene="cca"
                     /locus_tag="OQQ75_002980"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused tRNA nucleotidyltransferase/2',3'-cyclic
                     phosphodiesterase/2' nucleotidase/phosphatase Cca"
                     /protein_id="HCS1977226.1"
                     /translation="MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGR
                     DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD
                     NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLM
                     REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA
                     PARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA
                     GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQR
                     VEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREEL
                     TRRRIAAVASWKEQRCPKPD"
     gene            complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="OQQ75_002981"
     CDS             complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="OQQ75_002981"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1977227.1"
                     /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT
                     AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA
                     VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI
                     GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF
                     LTTGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF"
     gene            complement(11304..11672)
                     /gene="folB"
                     /locus_tag="OQQ75_002982"
     CDS             complement(11304..11672)
                     /gene="folB"
                     /locus_tag="OQQ75_002982"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional dihydroneopterin
                     aldolase/7,8-dihydroneopterin epimerase"
                     /protein_id="HCS1977228.1"
                     /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS
                     DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV
                     ARAANVGVIIERGNNLKENN"
     gene            11777..12394
                     /gene="plsY"
                     /locus_tag="OQQ75_002983"
     CDS             11777..12394
                     /gene="plsY"
                     /locus_tag="OQQ75_002983"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HCS1977229.1"
                     /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT
                     NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF
                     KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP
                     QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE"
     gene            complement(12407..>13094)
                     /gene="ttdR"
                     /locus_tag="OQQ75_002984"
                     /gene_synonym="dan"
     CDS             complement(12407..>13094)
                     /gene="ttdR"
                     /locus_tag="OQQ75_002984"
                     /gene_synonym="dan"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TtdR"
                     /protein_id="HCS1977230.1"
                     /translation="LVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ
                     VHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQS
                     LQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIM
                     LRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
                     GKPDEGYQVM"
BASE COUNT         3162 a         3683 c         3283 g         2966 t
ORIGIN      
        1 tggatgttta ccgcgattat tgccgtatgc attctgttta ttattggaat tattttcgcc
       61 aggctctatc gtcgcgcttc ggcagagcaa gcttttgttc gtactggttt aggtgggcaa
      121 aaagtggtga tgagcggtgg cgcaatcgtg atgccgatct ttcatgaaat aatccccatc
      181 aatatgaata ctctgaagct ggaagtcagc cgctcaacca ttgatagcct gattacgaaa
      241 gatcgtatgc gtgtcgatgt agtagtcgct ttctttgtac gggtaaaacc gtctgtagaa
      301 ggcatcgcca ctgcggcgca gacgttgggg caacgcacgc tatcaccaga agacttacgt
      361 atgttggttg aagataaatt tgtcgatgcc ctccgtgcaa cagctgcaca aatgaccatg
      421 catgagttac aggatacccg cgagaacttc gtgcagggag tacaaaatac tgtcgcagaa
      481 gacctgtcga aaaacggtct tgagctggaa agcgtttcac ttaccaactt taaccagacc
      541 tcgaaagaac atttcaatcc gaacaatgcc tttgacgccg aaggtttaac caaactgatt
      601 caggagacgg agcgccgtcg tcgcgaacgt aacgaagttg aacaggatgt agaagttgcg
      661 gtgcgtgaga aaaaccgtga tgcactttcg cgcaagttgg agattgaaca acaagaagcg
      721 tttatgacgc ttgagcagga gcagcaggtt aaaacccgta ctgccgaaca gaatgcacgt
      781 attgcggctt ttgaagctga acgtcgtcgt gaagcagagc agacgcgaat tctggctgaa
      841 cgacaaattc aggaaacgga gatcgagcgc gagcaggccg tccgctcaag aaaggttgag
      901 gctgaacgtg aagttcgtat taaagagatc gaacagcagc aggtcaccga aatcgccaac
      961 cagacgaaat cgatcgctat tgccgccaaa tcggaacaac agtcccaggc agaagcgcgt
     1021 gctaaccttg cactcgcaga agcagtaagt gcgcaacaaa acgtagaaac cactcgccag
     1081 accgcagaag ccgatcgtgc taaacaagtt gccctaatcg ctgccgcgca ggatgcagaa
     1141 accaaagcgg ttgaactgac cgtgcgggcg aaagcagaaa aagaagccgc agagatgcag
     1201 gcggcggcta tcgttaagtt agccgaagct acacgtaaaa agggtctggc ggaagcagaa
     1261 gcacaacgtg cgctgaacga tgctatcaac gtactttctg atgaacaaac cagccttaaa
     1321 ttcaaactgg ccttgttgca ggcgctacct gcggtaatag aaaaatccgt tgagccgatg
     1381 aaatctattg acggtatcaa gattattcag gtcgatggtc tgaatcgtgg cagcgctgcg
     1441 ggtgatgcaa acacgggtaa tgtggggggc ggaaacctgg cggaacaagc attatcagcc
     1501 gctctctctt accgcacaca ggcaccgctg attgactcct tgctcaatga aattggcgtt
     1561 tcaggcggct cactggcggc attgacttca cccttaacct caacaactcc cgtcgccgaa
     1621 aacgtagaat aaattttcag ctatgaacgt ccctggcaca aaaagccggg gattttttat
     1681 atctgcgttc cgctaaaaac tgcaaatgat caggtcgttg caacgttttg cgtgaccgct
     1741 cggggaaggc aaaactgcct ctgggaaagc gttgcgcgag gtccggcgct catcaacaat
     1801 cggggagtca gcaaagggct gaaacgggaa agcccctccc gaggaagggg ccttacagaa
     1861 ggaaagggtt atgatgaagc tcgtcatcat actgattgtg ttgttactcg taagtttcgc
     1921 agcttattaa cagccaatca gaggggggag aaatcctccc tcacccttgt tcctttactt
     1981 taggttgaaa aaaaatcagc gtcaagaagg tttcattaac acatatccct agcccaaaaa
     2041 gccggggatt ttttatatct gcgttccgct aaaaggtgca aatgctcagg acgttgcagc
     2101 gttttgcgtg accgctcggg gaaggcaaaa ctgcttcagg gaaagcgttg cgcggggtcc
     2161 ggcgctcatc aacaatcggg gagtcagcaa ggggctgaaa cgggaaagcc cctcccgagg
     2221 aaggggcctt atagaaggaa agggttatga tgaagttcgt catcatactg gttgtgttgt
     2281 tactgttaag tttcccgact tactaacaac tgatcagagg ggggagaaat cctcccttac
     2341 ccttgttcct ttactttagg ttgaaaaaac aacagcgtca ataggcctgc ctgctacgaa
     2401 gcgagatctg tgaaccgctt tccggttagc cttttttatc ctgttggatc ttcttgatga
     2461 tgttagtggt cgagcaaccg tcttcgaagt tgagcaccag cacttcgccg ccgttggccc
     2521 agacttcttt actcccggcg atctcttctg gtttatagtc gccgcccttc accagtaaat
     2581 ctggcaggat cccggcgatc aagcgctgcg gcgtgtcttc ttcaaacgac accacccagt
     2641 cgaccgcttc cagtgcgccc agcacaatca tacgctgttc gagcgggtta acggggcggg
     2701 aatccccttt cagccgtttg gtggaggcat cgctgttcac agcgacaatc agacggtcac
     2761 ccagtttgcg agcatttgcc agataggaga cgtgcccggc atgcaggatg tcaaagacac
     2821 cgttggtcat taccaccttt tcgccgcgtt tacgcgctgc cgctacggcc agcttcagtt
     2881 cctcttcggt catcacgcca aagccggtat ctgcgcgccc acgcactgca ttttccagct
     2941 cgatcggcga aaccgtggag gttcccagtt tgccgaccac cacgccagcc gccgcattgg
     3001 caaagaagca ggcttcttcc agcgaattac ccgctgccag cgttgccgcc aggacgccaa
     3061 tcaccgtgtc gcccgcaccg gtaacgtcat acacttcctg cgcctgggtt ggcatatgca
     3121 gcggcgcttt acccggttgc agcagcgaca taccctgttc ggaacgggtc actaacagag
     3181 ccgagagttc gtaatcggca atcagtttca tgccgcgctc aacaatctct tcttcggtct
     3241 tacatttacc gacaacagct tcaaattccg agagattcgg cgttaacagc gtagcgccgc
     3301 ggtagcgctc aaaatcggta ccttttggat caatcagcac cggaacgccc gctttacgcg
     3361 ccagttggat catctgctgt acgcttgcca gcgcaccttt ggcgtagtca gaaagcacca
     3421 gcgcgccaat cgaactcagc gcctgattaa tccgctcgtg cagcggctgc ggatcaacgc
     3481 cttcgaaacc ttcttcgaaa tccagacgga tcagctgttg gttgcgggaa agtacccgta
     3541 atttggtgat ggtcggatgc gtcggtacag aaacgaagtc gcatttgacg ttgacgtcgg
     3601 ccagagattt actcagcgcg cgcgctgcat cgtcaatgcc cgtcaacccg accaggcgtg
     3661 cattagcacc gagagaagcg atattcatcg ccacgttagc cgcgccgccc ggacgttctt
     3721 cgatggtatt cactttaacc acgggcaccg gcgcttccgg cgagatacgg ctggtgggac
     3781 cgtaccagta acgatccagc attacatcac caaccaccat cactcctgca cgttcaaact
     3841 ctgacagcgt tactttcatt cctgtctcct gagagattca aaatttgcgc gcgataatac
     3901 catacttcat tcttccacca gccacttctg ccagcttgcc cgcaccagat cacgctctgc
     3961 ggtgaagcaa tcctccgaca catggcccgg caattcctgt aatgccagat gatgaagttc
     4021 atcgcgcagc gtcgtgtaag cacgggtcag cgccatcgct tcctgctctt ccataatgtc
     4081 gttttgcgcc agcagctcca gaatacgcac gttgtctgac cagcgcgtta acttcggttt
     4141 ttcatgagcg tagcgcaaca ccagatattg ggtaataaat tcgatatcgg taattccgcc
     4201 ttcatcggct ttgatatcaa agcgattacg atgtttattg ccgagatgag cgcgcatttt
     4261 ctcgcgcatt tcccgcactt ccgtttgcag agttttacct tcacgcggca gcatcataat
     4321 ctcgcgacgc actgcgtcaa agtgcgcggt gagctgcgga tcgccgtaca ctacacgcgc
     4381 acgcaccagc gcctgatgct cccacgtcca ggcctcgttt ttctgataat cagcaaatgc
     4441 ttctgcggat gtcaccagca ttcccgccgc cccggacgga cgcagtcgtg catccacttc
     4501 atacaaaatg ccggaagagg ttcgcgtatt gaacagatgc ataatgcgtt gcgccagacg
     4561 cagataaaac tgtcgcccgt cgatttcccg ctcgccgtca gtcatcgcat ccattgggca
     4621 atcatggagg aagatcaggt caagatcgga actgtagcct aactcccagc cgcccagctt
     4681 gccgtagccg accaccgcaa aaccacggcc ttcgcgatcg ttgaggtgat ttggcttacc
     4741 gtagcgggcc accatttgaa cccacgcctg ctgaacgacg gcatctatca tagcctctgc
     4801 cagccaggtt aagtgatcgc tcactttcat caccggtagc gtaccagcga tatccgctgc
     4861 ggcgatgcgt aacagctgcg cctgtttgaa ctgacgcagc gcctcaagct gttgctcttc
     4921 gtcatcttcc ggcacgcgca gcaaatactg gcgcaactca tcgcggtagg catcggtcgc
     4981 cgtcggctgg taaagagtgt ttggatcgag caattcatcc agcaataatg gataacgcgc
     5041 cagctggctg gcaatcatcg gcgatgcggc acacagagaa atcaaatgtt taagcgccgc
     5101 agggaattca ctgagcaatt ctaaataggt ggtgcgggta acaatcccca ccagcaaggc
     5161 ggtaatgcgc gacagcgtaa cggcagcgtc ttcacgcgca cagacatcac ttagcagatg
     5221 tggcatcaga tggtcgagca cctgacgtcc tcgcggcccg atagtacgct tatccagctc
     5281 tttgcggaaa tcagcaatca gcgttaggac ctgtttgcga tcatcctcgc taagatgcgc
     5341 cagcactggc gtagtgtcat cttcctgcaa cgcatcctgc cacagctcac gccactgttc
     5401 cgacagcgac tcttcctgag tttcactttc gtcgtcgcca atcaattcat taaacacccg
     5461 gcgcacattg gtcatatgtg cggtcagcgc cccggtcagt tgcggccagt cagcaaagtc
     5521 catcgcccac gccagccgcg cacggttaag ctcatcagaa ggaagcgttt gggtttgttc
     5581 gtcgttaatg ctttgcagca ggttttccag acgccgcagg aacagatatg ccactcgcaa
     5641 ttgttcagca tcgttttcag aaagcagatg cagcgcggca atgacgctga gcgttggcag
     5701 taaagagcgc gactgcagcg acggttcgcg cccaccgcga atgagctgga acacctgaac
     5761 gataaattca atttcgcgaa tgccgcctgc gccgagtttg atattgtcgg tcaaaccacg
     5821 tcgacgcact tcacgggcaa tcatcccttt catgttgcgc agcgactgaa tcacgctgaa
     5881 atcgatgtaa cgacggaaaa caaacgggcg cagcatcgca cgcaactcgt tagcatagac
     5941 gccttcgcta tcgcccataa tccgcgcctt gaccatcgcg taacgctccc agtcgcgccc
     6001 ctgctcctgg taataatcct ccaacgcggc aaagctcagc accagcgggc cactttcgcc
     6061 aaacggacgc agccgcatat ccacgcgata gacgaagcca tcctgcgttg gttgatccaa
     6121 cactttaatc agccgctgcc ccatgcgggt aaaaaactgc gcgttatcca gttcccggcg
     6181 tccgccctgc gtacaaccat gttccggcca ggcaaaaatc agatcgatat ctgaggagaa
     6241 attcagttcc ccaccgccca gcttacccat gcctaaaatc agcagcggtt gcgcttcgcc
     6301 ctgcgcattg cacggcgttc cccactcgcg gcagcaagcg tcatacagcc agtcacgcgc
     6361 ggcgacaatc agcgtctccg ccagatggct gagctgctgc aatatgctct cttcagtaac
     6421 caaagccagc gtttgcgccc aggcgatgcg caccataatg cgccgccgga atagccgcag
     6481 ctcgcgcatt aacccggctt cgtcactcac attgctgagc gcctcctgca accatgccgc
     6541 gtaatgctgc cattcatcag cctgcggcga ttggctttcc agttccgtca gccactctgg
     6601 atgcgcaatc acgctgtcct gcacaaaatc actgaaagta agtactgact tcgcctgtgc
     6661 gctaagtgat ttctcggcta aaggctctgg cagccgctca acaacggtct gccagtactg
     6721 ctgtaacggt gaagagagcg gcttcataag cgattttatc cttgcctgat taacgttttc
     6781 cgctgtgcaa ccagaacggt tcctgattgt ttgcctcatt acggaaatgt tcaatttcaa
     6841 tgcgttgccc ggtcgcaata gcgtgacgca gcccctgcca gttctccagc caggcttgcg
     6901 cgacgacagg atcatagtaa cccgccagca acagtattga gtcaatatca cgcgtcagac
     6961 gtggcaactg gtcacggtag cgatcgccca acggctggca gaaaacgctt ttcagttcag
     7021 cggcatggcg ggaaagatgg atatcggcaa agcgtttgaa ggaatcgctc attttactct
     7081 gcgctttggc atctaaaaac ggctgccagg ctttgcttac cagccattcg gtcaacgcca
     7141 gcttcgccat tgccgttttg gtagagtaga ccgccgtcac ggcagaaacc gcagaagcga
     7201 tggtcgcttc gcattgagtc agcaaatcgc gtaagtgagt gctcgctttg cgcggcacaa
     7261 taccaccgaa cagcatcagt gtatgacgga ccagaccaat ggctgccagc acctgttctt
     7321 tcgccgcatc gttgccgcgt acccacagtt cttcatgata ctgccattgc gctaacgcca
     7381 gctcgagcgc cgcttccagc ccctgttcca catcggcttt tgccgcaaca tgcaaaatgg
     7441 tggtcggttt gatttcacgc gccggattgc cctgcgccag atgatagcca cgcgccgctt
     7501 tgctcaggct gccctggcgt aatccggttt gcgataccag ttggttcgcc agtttcagca
     7561 ccgcgcgcgt gtcgccgcta agcagttcca gttccagctc acagataggt tcagcaaatt
     7621 cccccgcttt cacctccccc tgatcgagag cgatttcaat tcggctgtca tcgaccgcca
     7681 ccagccattt ttcgcgataa aaatcggtgc tgaacagcgg ttgtacgcgg gaagcgagat
     7741 cggcgggcaa ttcgccgttc ggccagactt ccgtcggtaa ctgcgccagg tcgagcgtcg
     7801 gttcgctcaa cgccacgtta tattccgggc gctggtgtaa gccgcctgtc actcttcctg
     7861 caactttcat ggtcatctca tagcgaccgt tttcgccacg aatacgtaag cccatatcgt
     7921 gcccacgcag ccagttatcc ggcgtttcgt agtaaatatt cagcaactgc acggggtcat
     7981 ggtgctcgcc gcccagcgta ttgagatggt cacgcaacgc ctcaacggca ctgtgattaa
     8041 caataaactt taattcgatt tcctgagcca tggcctttac ttatcggtta tgtcacataa
     8101 gtgacgatga acggcgaact taatgcgatc ttttttgtca gtagatagta ttttgcgcca
     8161 aattgccatg caacgggcaa tttgacgggc gtaaaagttt gaagcagtgg caagacctga
     8221 cacagaggat tccgattgat gtcgaatgct ttgcgtagcg acactgatgc cactactatc
     8281 gttccacttt ccatgacaat aacgacagcc tgatgccaaa attacgcctg atcggattaa
     8341 ctttactcgc acttagcgcc actgccgtct cacacgctga agaaacgcgc tatgtttctg
     8401 atgaactgaa tacctgggtc cgtagcggtc cgggagatca ttatcgcctc gtgggcacgg
     8461 ttaacgccgg cgaggaagtg accttattac aaactgacgc caacaccaat tatgcccagg
     8521 tgaaagacag ctctggccgt accgcctgga tcccgttgaa acaacttagc actgagccaa
     8581 gcctgcgctc ccgtgtgcca gatctggaaa atcaggtcaa aaccctgacc gataaactca
     8641 ccaatatcga taacacctgg aatcagcgca ccgcagaaat gcagcaaaaa gtggcgcaga
     8701 gcgacagcgt gatcaacgga ttaaaagaag aaaatcagaa attgaaaaac gagctgattg
     8761 tcgcgcagaa aaaggtcgat gccgccagcg tacagctgga tgacaaacag cgcaccatca
     8821 tcatgcaatg gtttatgtat ggcggtggcg tgctggggct tggcttgctg ctcggtctgg
     8881 tactgccaca cctgatccca acgcgcaaac gcaaagagcg ctggatgaac taaatcgcct
     8941 tcttcgttgc actgtcttat tattaggaat tgtgtatttg acgaagggat gatggcgtga
     9001 agatttatct ggtcggtggt gctgttcggg atgcattgtt agggctaccg gtcaaagaca
     9061 gagattgggt ggtggtcggc agtacgccac aggagatgct cgacgcgggc taccagcagg
     9121 taggccgcga ttttcctgtg tttctgcatc cgcaaacgca tgaagagtat gcgctggcac
     9181 gtaccgaacg gaaatccggt tccggttaca ccggttttac ttgctatgcc gcaccggatg
     9241 tcacgctgga agatgatctt aagcgtcgcg atctgaccat taatgcgctg gcccaggacg
     9301 ataacggcga gattatcgac ccgtacaacg gtctgggcga tctgcaaaat cgtctgttgc
     9361 gccatgtttc ccccgctttt ggcgaagatc cgttacgcgt tctgcgcgtg gcgcgttttg
     9421 ctgcgcgtta tgcccacctc ggttttcgta ttgccgatga aactctgacg ctgatgcgcg
     9481 agatgaccca tgcgggtgaa ctggaacacc tgacgcctga acgggtatgg aaagagacgg
     9541 aaagcgccct caccacccgc aatccccagg tgttcttcca ggtactgcgc gattgcggtg
     9601 cacttcgcgt tttattcccg gaaattgacg ccctgtttgg cgttccggcc cctgccaggt
     9661 ggcatccgga aatcgacacc ggtattcata ccttaatgac gctctcaatg gcggcgatgc
     9721 tgagtccgca ggttgatgtc cgtttcgcaa ctttatgcca cgatctcggt aaaggactga
     9781 cgccgccaga actttggccg cgtcatcatg ggcatggccc ggcgggtgtt aagttagtgg
     9841 aacaactatg ccagcgtctg cgcgtgccaa atgaaattcg cgatttagcc agactggtgg
     9901 ctgagtttca cgatctcatc cacaccttcc caatgctgaa cccaaaaacc atcgtcaaat
     9961 tatttgattc catcgatgcc tggcgtaaac cgcagcgtgt cgagcaactg gcgctgacca
    10021 gcgaggctga cgtacgcggc agaaccggtt ttgaatcagc ggactacccg caaggccgtt
    10081 ggttgcgcga agcctgggaa gtggcgcagt cagtgccgac aaaagcggtc gttgaagcgg
    10141 gatttaaagg tgtggagatt cgcgaggagc tgacccgacg gcggattgcg gcggtagcca
    10201 gttggaagga acaacgttgc ccaaagcctg actgagtata aaactaaacg ttaacacgaa
    10261 ccatcccctc gccccttcgg ggagagggtg aggggaacag accagcaccg gtgcgaacaa
    10321 tcacccccac cccggccctc tccctacaga gcgagggaga aaaccaggcc tgctcccgaa
    10381 ccttttctca atcaaaagaa cacgacgtac accgcagccg ccacaataaa gcgataaatg
    10441 gcgaacggga taaacgaaat gcgcttaatc aattgcagga aggttttaat cgctatcagc
    10501 gccaccacaa aagcggtgat aaacccaacg gcaaacatcg ggatatcgcc ggttgtcagg
    10561 aagccccagc ttttgtagag atcgagcgcc gttgcgccca tcatcatcgg taccgccagc
    10621 aggaacgaga actcggaagc agcgtaacgg ctcacgccca tcagcatccc acctgaaatg
    10681 gtggccccgg aacgggagaa acccggccac agcgccagac actggaaaca gccaatcata
    10741 aacgcctgac gataggtcat atcatcaaga cccggcgcac gcggctcttt cggcttcagg
    10801 cattcggcgg caatcagcaa caaaccgcca acgaccagtg catacatcac atttatcggg
    10861 ttaaacaatg acttaatcgt gtcgtggaac aacagcccca gtaccaccgc cggaatcatc
    10921 cccagcaaaa tgtggatcag cgttaaacga cctttgcttt ctccttcgtg ctgcaacggg
    10981 cggccaaagt ggatgccaat caggccaaac agacgccgcc agaacatcac tactaccgcc
    11041 agaattgatc ctaactggat cacaacttca aaggttttcg ccgtgtcgcc ctcgaacccc
    11101 aacaagtgac cgacaataat catatggccc gtgctggata ccggcagaaa ttctgtcaat
    11161 ccttcgacca cacccaatat tgccgctatc agcagcgagt gcatatcgct catcaataaa
    11221 cccctaaatt attaaaatgt accgcttgtc cggactactg cagtaagacc aggttataac
    11281 cgtttggttt aacagctgta aaattaatta ttttctttca gattattgcc acgctcaatg
    11341 attacaccaa cattcgccgc ccgcgccact gcgcctggct tgctgagttt gatgcgcacc
    11401 cacggcgagt tgaagcgtgc taacagcagc tccgccacct cttcagccac gcgttccacc
    11461 agcgcaaaac gcgccccctc gacgtggctg accaccgttt ctgcaatgtc agcgtaactg
    11521 aggcaatccg ccacatcatc acttttcgcc gctttacggt tatcccatgc catttcgata
    11581 tcgaacacta acttctgttc gatggtctgt tcccagtcgt aaacaccaat agtggtgatt
    11641 accgaaagtt gctctataaa tacaatatcc atcacgtcct gcctgctttt tggctaaccg
    11701 gataccactt ccggcgaaat gtgcgtatta tccacagatt catcgttgaa cacgaatttt
    11761 caaaacggaa cagcttatga gtgcaatcgc gcctggaatg atcctcatcg cgtacctctg
    11821 cggctccatt tccagtgcca ttctggtttg ccgcttgtgt gggctgcccg atccgcgaac
    11881 cagcggctcc ggcaatccag gcgcaaccaa tgtgttacgt atcggtggca agggagcagc
    11941 cgtagcagta ctgattttcg acgttctgaa aggaatgttg cccgtctggg gcgcgtatga
    12001 attaggtgtc agccccttct ggctaggctt aattgccatc gccgcctgtc ttggacacat
    12061 ctggcccgtt ttcttcggat ttaaaggagg aaaaggcgtt gctaccgctt ttggtgccat
    12121 cgcacccatt ggctgggatc tcaccggagt aatggcggga acctggttac tgaccgtgct
    12181 attgagcgga tactcgtcgc tgggagcgat tgtcagtgca ctgattgctc cgttttatgt
    12241 ctggtggttt aagccacaat tcaccttccc agtttcgatg ctctcttgcc tgatcctgct
    12301 gcgtcatcat gacaacatcc agcgtctgtg gcgtcgtcag gagacaaaaa tctggacgaa
    12361 attcaaaaga aagcgcgaaa aggatcccga gtgatttctg gtggatctac atgacctgat
    12421 agccttcatc gggcttgccc agccgttgct ggcaccatgc cgccagaaat tccacgcaga
    12481 cacgtaattt catgctgcga tagagcggct cccggtaaac agcccagata ttggcgcttt
    12541 gtgcatactc cggcaatact tgcaccagtt tgccactctc cagaaacggc aacacatccc
    12601 actcggaacg cagcataatc cctttgccct ccagcgccca ttgcaacact atctcgccgc
    12661 tattggagga aagatgcccg ctaaccttca ccgatttttt ctcctgaccg ttccccaact
    12721 cccatattcc gtgggtcata tcgcgctctt tggtcaccag acagtcatga cgacttaatt
    12781 cctgtaatga ttgtggctgc ggatattttt gcagatactc aggtgctgcg cataatattc
    12841 ttttattttt cgttaacaga tgcgcaatat aataatcagg aatttcgtca ttaatacgaa
    12901 tatccagatc aatattatcc tgcactaaat caatttgccg atcgaacaat tcaaaatgca
    12961 cctgtaactc aggataattg cgcataagtt cggtaatggc tggcgcaata tggctgcgcc
    13021 caaaaccaaa actgcaacca atacgaatca tcccctccgg gcgcgttttg atttgcgtga
    13081 cgtcatcgac cagt
//
LOCUS       DAJVUP010000116        13065 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.116, whole genome shotgun sequence.
ACCESSION   DAJVUP010000116 DAJVUP010000000
VERSION     DAJVUP010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13065
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.116"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..180
                     /locus_tag="OQQ75_002985"
     CDS             <1..180
                     /locus_tag="OQQ75_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1977231.1"
                     /translation="SLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNR
                     RLSESVPCMPHKKAG"
     gene            201..902
                     /gene="mlrA"
                     /locus_tag="OQQ75_002986"
     CDS             201..902
                     /gene="mlrA"
                     /locus_tag="OQQ75_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MlrA"
                     /protein_id="HCS1977232.1"
                     /translation="MGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIK
                     RWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYP
                     AQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARRKQGKDALVVGW
                     NIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQL
                     TSWQEQGHDIFPLGI"
     gene            962..1069
                     /locus_tag="OQQ75_002987"
     CDS             962..1069
                     /locus_tag="OQQ75_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohO"
                     /protein_id="HCS1977233.1"
                     /translation="MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG"
     gene            complement(1050..1781)
                     /gene="yehW"
                     /locus_tag="OQQ75_002988"
     CDS             complement(1050..1781)
                     /gene="yehW"
                     /locus_tag="OQQ75_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehW"
                     /protein_id="HCS1977234.1"
                     /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE
                     SFAALALAHFWLVGISSLFVVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV
                     LAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLR
                     KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL
                     LVALAAIIADRLFERLVQALSQHAK"
     gene            complement(1786..2712)
                     /gene="yehX"
                     /locus_tag="OQQ75_002989"
     CDS             complement(1786..2712)
                     /gene="yehX"
                     /locus_tag="OQQ75_002989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter ATP binding
                     protein YehX"
                     /protein_id="HCS1977235.1"
                     /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL
                     KMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL
                     QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE
                     PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN
                     PLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVCREERAEGEALAEEMTLRDALS
                     LFVARGCEVLPVVNTQGQPCGTLHFQDLLEEA"
     gene            complement(2705..3862)
                     /gene="yehY"
                     /locus_tag="OQQ75_002990"
     CDS             complement(2705..3862)
                     /gene="yehY"
                     /locus_tag="OQQ75_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehY"
                     /protein_id="HCS1977236.1"
                     /translation="MTYFRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQL
                     WPQTIWMLVGVGCAWLTACFIPGKKGSICALILAQFVFVLLVWGAGKAATQLAQNGSA
                     LARTSLGSGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL
                     SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNV
                     IQTVPSVALFGLLIAPLAALVTAFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVV
                     GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIG
                     AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLTDALFDLLIALLKVKRND"
     gene            complement(3869..4786)
                     /gene="osmF"
                     /locus_tag="OQQ75_002991"
     CDS             complement(3869..4786)
                     /gene="osmF"
                     /locus_tag="OQQ75_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein OsmF"
                     /protein_id="HCS1977237.1"
                     /translation="MPLSKVWAGSLVMLAAVSLPLQAASPVKVGSKIDTEGALLGNII
                     LQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQ
                     QGYEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTF
                     KLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQISGVNAAMA
                     YGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTL
                     QQLNASIAVEGLDAKKVAADYLKQKGWTK"
     gene            complement(5038..7335)
                     /gene="bglX"
                     /locus_tag="OQQ75_002992"
     CDS             complement(5038..7335)
                     /gene="bglX"
                     /locus_tag="OQQ75_002992"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HCS1977238.1"
                     /translation="MKWLCSVGIAVSLALQPALADDLFGNHPFTPEARDAFVTELLKK
                     MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRL
                     KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD
                     VSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG
                     GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD
                     QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS
                     GKVTMEELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
                     ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAV
                     GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDMVVAV
                     VGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA
                     ILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP
                     NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKRE
                     GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD
                     AEPGKFNVFIGTDSARVKKGEFELL"
     gene            7531..9246
                     /gene="dld"
                     /locus_tag="OQQ75_002993"
     CDS             7531..9246
                     /gene="dld"
                     /locus_tag="OQQ75_002993"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1977239.1"
                     /translation="MSSMTTTDNKAFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG
                     DALAVVFPSSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTL
                     RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG
                     GSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH
                     DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ
                     QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT
                     DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL
                     LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD
                     EVEDILALDIALQRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH
                     ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN
                     WQEVE"
     gene            complement(9285..10217)
                     /gene="pbpG"
                     /locus_tag="OQQ75_002994"
     CDS             complement(9285..10217)
                     /gene="pbpG"
                     /locus_tag="OQQ75_002994"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311048.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HCS1977240.1"
                     /translation="MPKFRVSLFSLALMLAVPLAPQAVAKTAAAITASQPEIASGSAM
                     IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY
                     SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR
                     FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNH
                     LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW
                     IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND"
     gene            complement(10391..10978)
                     /locus_tag="OQQ75_002995"
     CDS             complement(10391..10978)
                     /locus_tag="OQQ75_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014170891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HCS1977241.1"
                     /translation="MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICA
                     FIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS
                     LAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE
                     EGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF"
     gene            11148..11726
                     /locus_tag="OQQ75_002996"
     CDS             11148..11726
                     /locus_tag="OQQ75_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416640.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1977242.1"
                     /translation="MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLV
                     VLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFM
                     YGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
                     KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA"
     gene            complement(11856..12617)
                     /locus_tag="OQQ75_002997"
     CDS             complement(11856..12617)
                     /locus_tag="OQQ75_002997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1977243.1"
                     /translation="MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTA
                     REVVSHGVRAEIVQLDLGKLPEGAQALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFD
                     EWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL
                     GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIA
                     SLVAWLCSEGANYTTGQSLIVDGGFMLANPQFNPE"
     gene            complement(12670..>13065)
                     /locus_tag="OQQ75_002998"
     CDS             complement(12670..>13065)
                     /locus_tag="OQQ75_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001583680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HCS1977244.1"
                     /translation="QQMGVTAGLTLPIFDSGRLNANLDIAKAESNLSIASYNKAVVEA
                     VNDVARAASQVQTLAEKNQHQAQIERDTLRVVGLAQARFNAGIIAGSRVSEARIPALR
                     ERANGLLLQGQWLDASIQLTGALGGGYKR"
BASE COUNT         3141 a         3662 c         3301 g         2961 t
ORIGIN      
        1 tcacttgccg caggagctaa tcctagtttt atcgcaagcc agatgggcca cacaaacgca
       61 caaatggtat tcaatgttta cggagcatgg atgaaagaca acaatcacga acagatagaa
      121 cttcttaaca gaagactatc tgaaagtgtc ccatgcatgc cccataagaa agcggggtaa
      181 aataaaaact tgcaaaatca attggtttac ctttaatccc tgtcacgtta cgcgcgtggc
      241 agaggcgtta cgggttgctg aaaccgcaac ggacagacgg cggtcatcga ctgttcaacg
      301 atgccgatat tgaccggatc cgcgagatca aacgctggat cgacaacggc gtgcaggtca
      361 gcaaagttaa aatgctgctc agtaatgaaa atgttgatgt gcagaacggc tggcgcgatc
      421 agcaagaaac attactgacc tacctgcaaa gcggcaatct gcatagcctg cgaacgtgga
      481 tcaaagagcg cggtcaggat taccccgccc agacactcac cacacatctg tttattcctc
      541 tgcgccgacg gcttcagtgc caacaaccga ctctccaggc gctgctggcg atcctcgacg
      601 gcgtactgat caactacatc gccatttgtc tggcttcggc acgtagaaaa cagggtaaag
      661 atgcgctggt ggttggctgg aatattcagg ataccacccg tctgtggctg gagggctgga
      721 ttgccagtca acaaggatgg cgcattgatg tcctcgccca ctcgctcaat caactacgcc
      781 ctgaactatt cgaaggccgt acattgctgg tgtggtgcgg tgaaaatcga acctccgccc
      841 aacagcagca actcaccagt tggcaagaac aaggccatga tattttccca ctcggcattt
      901 aatgattcgt taacaaatgc gctttactgt acaatccttt cgttaacata aggagtgcaa
      961 tatgcgcata gctaaaattg gggtcatcgc cctgttcctg tttatggcgt taggcggaat
     1021 tggtggcgtc atgctcgcag gttatacctt tattttgcgt gctggctaag cgcctgcacc
     1081 agcctttcaa acaggcggtc tgcaatgatc gccgccagtg ccaccagtaa cgccccctgg
     1141 atcacatacg cggtattaaa tccgctaagc ccgatgatga tgggcgtacc cagcgtgctg
     1201 gcccctaccg ttgaggcgat cgtcgccgta ccaatgttga taatcaccga agttcgcacg
     1261 cccgccagaa tcaccggagc cgccagcggt agctcgacct tacgcagtcg ctgaccacga
     1321 ctcattccca tacctttcgc aacttctgtc acgctggcat caatcgctcc cagcccggca
     1381 agtgtcgcct gcaggacggg cagcacaccg taaaggatca aggcgataat cgctggttgc
     1441 agaccaaagc cgatcaccgg aacggcaatc gccagcactg cgacaggcgg aaaagtctgt
     1501 ccaacggcgg caatagtttc caccagtggg cgaaattccg cgccccacgg gcgagtgaca
     1561 gcaattccgg caccagtgcc aatgatcacc acaaacaaac tcgaaattcc caccagccag
     1621 aaatgagcca gtgccagagc tgcaaaactt tcttgctgat aaacgggtcg tggcagttgt
     1681 gggaacaagg cagcaaacag cggctggctg taaggcagcc agaaaatcag tgccacaaac
     1741 aaagcaatga gccagaacag cggatcgcgc aacatcttca tacgcttacg cctcctccag
     1801 cagatcctga aaatgcagcg tgccgcaagg ctggccctgc gtgttcacca ccggcagcac
     1861 ctcgcatccc cgcgcgacaa acagggagag cgcatcgcgt agcgtcatct cttctgccag
     1921 tgcctcacct tctgcccgtt cttcgcgaca cacgtaatcc gccacactac gtaacgaaag
     1981 caggcgcaca cccagttcgc tgcgcccaaa aaactggcgg acaaaatcgt ttgccggacg
     2041 agtcagcatc gtcagcggat tgccctgctg caccacttca ccgtgatcca tcaataccag
     2101 atgttctgcc agccgtagcg cctcatcaat atcatgagtg accagcacaa tggtacgccc
     2161 cagcaaacgg tgaatgcgcg tcatctcttg ttgcaacgcg ccgcgcgtta ccgggtccag
     2221 tgcgccaaaa ggttcatcca tcagtaagac ttgcggatcg gcagccagtg cgcgcgccac
     2281 tcccacacgt tgctgctgac caccggaaag ctgatgcgga taacgctcac gtaaatttga
     2341 ctccagcccc agtagcgcca ttaattcgtc gatacgatcg tcaatccgcg cccgcgacca
     2401 tttttgtaat tgcggcacgg tagcgatgtt ttgcgccacg ctccagtggg ggaacaggcc
     2461 aatagattga atggcatagc ccatccggcg gcgcaactcc agtactggca gcgagcgaat
     2521 ttcttctccg gcaaagcgga tcactccgct gtcatgctcc accaggcggt taatcatttt
     2581 cagggtggtg gatttgccgg agccagatgt gccaatcagc accgaaaaac tcccttcctg
     2641 aaaattgaga ttgagatcgt taacggcttt ttgtgcgccg aacagtttgc tgacatggct
     2701 aaattcaatc attacgtttc accttcagca gtgcgataag caaatcgaac agcgcgtcgg
     2761 taagcaccgc cagaacaatt accgggatca cccccagcaa cactaaatca atggcgctgc
     2821 ttagcagccc ctggaaaacc agcgcaccaa aaccgcctgc gccgattaac gccgcaatca
     2881 ccgccatacc tacagtttgc accatcacca cccgcaggct gcgcagaaat accggtaacg
     2941 ccagtggtaa ctgaacatgc aggaatcgct gcgccccgct catgcccatc gctctggcac
     3001 tctccagcac atcgcgcggg atctggttca aaccgactac cacgccgcgc accagcggca
     3061 gcaaggcata gagcaccagc gcaatcagtg cgggtgtcat tccggttcct gctatgccga
     3121 gcttccccag ccacggaaag gccgtcacca gcgcggcaag cggcgcaatc aacaggccaa
     3181 agagcgccac cgaaggcacg gtctgaatga cattgagcag agaaaaaatt gccccctgcc
     3241 gagcagtgga aaagtagcac cagatgccca acggcacacc aatcactaac gcaggcagca
     3301 ccgcaccaaa cagcaacgtc agatgttgtg ccagcgcgtc gtcaaacaca tcctgacggt
     3361 tggcgtattc tttcattagt gagagatcgt taagcgtgcc ggagtacagc aaccacagcg
     3421 gaataatggc aatctgcata tgcaacaacc agcgccacag cggatgcgtg gagattcggc
     3481 ggatggcatc gctacaggcc agcaatgcca gcgccgcagc cagccagaaa ccactgccga
     3541 ggctggtacg cgccagcgca ctgccatttt gcgccagttg tgtcgccgcc tttcccgcgc
     3601 cccacaccag caatacgaag acgaattgcg ccagaatgag tgcacaaatg ctgccttttt
     3661 taccgggaat aaaacaggcc gtcagccagg cgcaaccaac gcccaccagc atccagatcg
     3721 tttgcggcca cagctgccag agatgacgcc cctcacccga aactaaacga ttaggcgcgt
     3781 aactgataaa cggcagcgcc gctgcgattg ccgtcagcaa cagcagcagc gccagaacag
     3841 gattaatacg gaaataagtc acgggaaatt acttcgtcca ccctttttgt ttcaggtagt
     3901 cggcagccac ttttttggca tccagtcctt ccacagcaat gctggcattc agttgctgca
     3961 atgtttttgc atcgaggctg gcgaagactg gctgtagcca ctgtgccatt tgcggatact
     4021 ccttcaacac cgactcacgc accactggtg caggcgcgta gataggttgc acaccttgcg
     4081 gatcgcttaa ggtttgcagc cccagcgccg ctaccgggcc gtcagtgccg taagccattg
     4141 cagcattaac gccagagatt tgctgggcag cggctttgat cgtcaccgcc gtgtcgccac
     4201 cagccagtga cagcaactga tcctgaccga gcttaaagcc ataggctttt tcaaacgcgg
     4261 gtaacgcatc ggcgcgttcg ataaactctg ccgaggctgc cagtttgaag gtgccgccct
     4321 ctttcagata acgactcagg tcggcaagcg aagtgagttt atttttctct gccacatcct
     4381 gacgcacggc gatagtccag gtgttatttg caggcgcggg cgtcagccag attaacttgt
     4441 tgtgctccga atcgagcttt ttgactttct cgtaaccttg ctgcgcgttt ttccacgctg
     4501 catcgttttc atctttaaag aagaaagcgc cattgccggt atattccgga tagatatcca
     4561 gttcaccgga agtaatcgcc ccgcgcacca caggagtcgt tccgagttgc actttattca
     4621 ccgtcggtac gccgtggctt tccagcacct gcaagatgat gttgccgagt agcgcgcctt
     4681 cggtatcgat ttttgaaccg actttaacgg gggaagccgc ctgtagcggc aggctcacgg
     4741 ctgccaacat aaccagtgaa cctgcccaga cctttgagag tggcatgatg ctttcctcat
     4801 tcttttactg ttgttttcag cgaattaaga gaaaagcata gttgataatg acagagttag
     4861 cctgagcgga aggattcagt tgcagaatca gataaatact taaagggcat attttgcccg
     4921 gcgtttcttg ccggatgcgg cgtaaacgcc ttatccggcc tacaaaggtc gaaaattcag
     4981 caagttaaga tatgaacatc aggcaaaggg cgcaaacgtc gcgcccttac taaagcatta
     5041 cagcaactca aactcgcctt tcttaacgcg tgcggaatca gtgccgataa agacattgaa
     5101 cttgccaggc tcggcgtcat atttcatctg ttgattccag aacttcagcg cctcgatatc
     5161 aatcgggaag ctgacagtct gagtttcgcc cggtttcagg gtgattttct caaagccttt
     5221 cagctgcttc actggacggc tcatggaagc cgtcacatcc tgcaagtaca tctgtactac
     5281 cgtggcccct tcgcgtttac cggtgttcgt cacctgcacg ctggccgtca ctttgccgtc
     5341 acgcttcatg gtcggcgcag aaagtttcac atcagagacg gtgaaagtgg tatagctcag
     5401 accatagccg aacggataaa gcgccccgtt agcttcatca aaataacgcg aagtgtattt
     5461 gttcggcttg tcggcattat acggacgacc ggtgttcaga tggctgtagt acaccgggat
     5521 ctgcccgaca gaacgcggga aggacatcgg cagcttgccg gacgggttgt aatcgccaaa
     5581 caacacatcg gcaattgcat taccgccttc agtccccgca aaccaggttt ccagaatcgc
     5641 atcagcctgc tgatcttctt tcaccagcgc cagcggacgc ccgttcatca gcaccagcac
     5701 cagcggttta ccggtggctt tcagcgccgc aatcaagtca cgttggcttt gcggaatagt
     5761 gatatcggta cggctggagg cctcgtgcgc catcccctgt gcttcaccga ccacagccac
     5821 caccatatca gattgtttcg ccgtctgcac cgcttcatca atcatctctt gcggcgagcg
     5881 cggatcgact ttgaccgctt cttcatactg attcaggaaa tcgataatgc ctttgtcact
     5941 ggtaacgttc gcccctttgg catacagcac tttaccgttt tcaccgacgg catttttaat
     6001 cccggtcagt acggtcacgg attgatcggc aacaccggct gcggaccagc tgcccatcac
     6061 gtcgcgttta ctgtccgcca gtggcccaac caccgcaatg gtggccgatt ttttcagcgg
     6121 taacgtttcg agacggtttt tcagcaacac caggctttcg cgcgccactt cacgtgcttc
     6181 tttacggtgc aggcggcttt cggcattggt atccaccggg tcagactctt tcggccccaa
     6241 atggctgtat gggtcgttaa acaatcccat atcatattta acgttcagta catggcgggc
     6301 agcatcgtcc agctcttcca tcgtcacttt gccggatttg atcaacccag gcagatactt
     6361 cgagtaatac tcgtcgctca tactcatgtt gattccggat ttcagcgcca cgcgcaccgc
     6421 atcttccggg tctgccgccg tgccatgttt aatcagctct ttgattgcac cgtgatcgga
     6481 aacggtgatg cctttaaagc cccactggtc gcgcagaaca tctttcagca gccaggaatc
     6541 ggaggtggct ggcgtgccgt tcagcgagtt cagcgccacc atcaccgcgc cgctgcctgc
     6601 gtccagcccc gctttgtacg gcggcatata atcattaaac aggcgctgcg gactcatatc
     6661 gacggtgttg tactctttac cgccttctac cgcgccgtat gcggcaaagt gtttgacgct
     6721 ggtcatcacc gagtagcgat ctgccgggct tttaccctgc atcgcttcca ccatggtttt
     6781 acccattgtt gaggtgagat acgtatcttc gccaaaacct tcggaagcac gtccccagcg
     6841 cggatcgcgc gagacatcga ccatcggtgc ccaggtcata ttcaggccat catctgccgc
     6901 ttcataagca gagacacgtc cgaccgtttt cactgcatcg aggttaaaag acgaggccag
     6961 accgaggcta atcgggaaca ccgtgcgctg accgtgcagc acgtcgtaag caaagaaaag
     7021 aggaattttc aggcggctta attccatcac ctgatcctgc atggcgcgga tatcctgacg
     7081 ggttacggtg ttgaaaatcg ccccaacctg accgtctttg atcatctcgc ggatcgcctc
     7141 tttcgggtta tccgggccga cgctgattaa gcgcagctga ccaattttct catcaactgt
     7201 cattttctta agcaattcgg tgacgaacgc atcccgcgct tcgggcgtga atggatggtt
     7261 gccgaataaa tcatccgcca gtgctggctg cagggccaga ctcaccgcga ttcctactga
     7321 acatagccat ttcatatgga tttttcttcc tctgttgccc gacgaggcag cgaaaatggt
     7381 gcaaaaaccg tagtttgcca taagcatgat ggagagagaa aaagaatgct cagtttattg
     7441 tctgaatttt caaaatattc actcgctgaa ttgtcataca aggcgctatt ctagtttgtg
     7501 atattttttc gccaccacaa ggagtggaaa atgtcttcca tgacaacaac tgataataaa
     7561 gcctttttga atgaacttgc ccgtctggtc ggtcattcac acctgctcac cgatcccgca
     7621 aaaacggccc gctatcgcaa gggcttccgt tctggtcagg gcgacgcgct ggctgtcgtt
     7681 ttccctagct cactactgga attgtggcgg gtgctgaaag cctgtgtcac cgccgacaaa
     7741 attattctga tgcaggctgc caatacaggc ctgaccgaag gatcgacgcc aaacggtaac
     7801 gactatgatc gcgatatcgt gatcatcagc accctgcgtc tcgacaagct gcacgttctt
     7861 ggcaagggcg aacaggtgct ggcctatccg ggcaccacgc tctattcgct ggaaaaagcc
     7921 ctcaaaccgc tgggacgcga accgcactca gtgattggat catcgtgtat aggcgcatcg
     7981 gtcatcggcg gtatttgtaa caactccggc ggctcactgg tgcaacgtgg cccggcgtat
     8041 accgaaatgt cgttattcgc gcgtataaat gaagacggca aactgacgct ggtgaaccat
     8101 ctggggattg atctgggcga aacgccggag cagatcctta gcaagctgga tgatgatcgc
     8161 atcaaagatg acgatgtgcg tcacgatggt cgtcacgccc acgattatga ctatgtccac
     8221 cgcgttcgtg atattgaagc cgacacgccc gcacgttata acgccgatcc tgatcggtta
     8281 tttgaatctt ctggttgcgc cgggaagctg gcggtctttg cagtacgtct agataccttc
     8341 gaagcggaaa aaaatcagca ggtgttttat atcggcacca accagccgga agtgctgacc
     8401 gaaatccgcc gtcatattct ggctaacttc gaaaatctgc cggttgccgg ggaatatatg
     8461 caccgggata tctacgatat tgcggaaaaa tacggcaaag acaccttcct gatgattgat
     8521 aagttaggca ccgacaagat gccgttcttc tttaatctca agggacgcac cgatgcgatg
     8581 ctggagaaag tgaaattctt ccgtccgcat tttactgacc gtgcgatgca aaaattcggt
     8641 cacctgttcc ccagccattt accgccgcgc atgaaaaact ggcgcgataa atacgagcat
     8701 catctgctgt taaaaatggc gggcgatggc gtcggtgaag ccaaatcgtg gctggtagat
     8761 tatttcaaac aggccgaagg cgatttcttt gtctgtacgc cggaggaagg cagcaaagcg
     8821 tttttacacc gtttcgccgc tgcgggcgca gcaattcgtt atcaggcggt gcattccgat
     8881 gaagtcgaag acattctggc gttggatatc gctctgcagc gtaacgacac cgagtggtat
     8941 gagcatttac cgccggagat cgacagccag ctggtgcaca agctctatta cggccatttt
     9001 atgtgctatg tcttccatca ggattacata gtgaaaaaag gcgtggatgt gcatgcgttg
     9061 aaagaacaga tgctggaact gctacagcag cgtggcgcgc aataccctgc cgagcataac
     9121 gtcggtcatt tgtataaagc accggagacg ttgcagaagt tttatcgcga gaacgatccg
     9181 accaacagta tgaatccggg gatcggtaaa accagtaagc ggaaaaactg gcaggaagtg
     9241 gagtaaaaat tacggatggc atagtatcgc catccgtcat tcacttaatc gttctgtgcc
     9301 gtctgccccg ccgccgccat ttgggcggct ttttgttttt tatagctcaa cgctgctgct
     9361 ggaacaggca tcactttacc ggtttcaatc caggtacgca ggcggctggc atcggcaaaa
     9421 tgggtatatt tgccaaacgc atccatcact accagcgcca ccggtttatt attgataacc
     9481 gtacgcatca ccagacaatg gcccgccgca ttggtaaaac cggttttggt taactgaata
     9541 ttccagttat cgcgatacac cagatggtta gtattgcgga acggcagcgt atacgtcggg
     9601 ttagagaagg ttgccatatc ttcccgggta gtacttaact gcccgatcaa cggatattgt
     9661 ttgctggcaa tgagcagttt ggttaagtca cgggcagttg aaacgttatg caccgacaat
     9721 ccggtaggtt caacaaagcg cgtgttgttc attccgagcg atttcgcttt cgcattcatt
     9781 gccttaataa aggctttgta accaccggga taatggtgtg caaggcttgc cgccgcgcgg
     9841 ttttctgaag acatcagcgc cagcaacagc atatctttac ggctgatttc gctattcagt
     9901 cgtacgcgcg aatagacccc tttcatctcc ggcgtctggc tgatatccac ttttagtttt
     9961 tcatccagcg gcagtcgtgc atccagcaca accatcgcgg tcattaattt gctgatagac
    10021 gcaatcggac gcaccagatc cgggtggttc gagtagatca ctttgttggt attcagatca
    10081 acaatcatcg cgctaccgga ggcaatttca ggttgtgaag cggtgatagc ggctgccgtt
    10141 ttcgcaacgg cctgcggtgc caaaggcaca gccagcatca gggccaggct aaataaagaa
    10201 actcgaaatt tcggcatgat gagcattcag atagtggttc acgcgcacag gttgcgcacc
    10261 gccggagtaa ggatttactg aggctagcga cgccatcata acgagcaaaa agtgcgatcg
    10321 tcaaaggaga atcgtgagga aatgctgcat tgctgacatt tacgccagca atgcaacgtc
    10381 aaagaacttt ctagaacaaa cgataaccgt agccccatag tataacggtt agggcgagca
    10441 gcacttccag taccagcacg ccaatcgcca gcgtcgaact agagaagcta aggccttcct
    10501 ctttgttgat attcaggaag ctcggaatac caaggtaaag caggtagccg gtgtaaaaca
    10561 gcgccaccgt gccgaccagc gcacacaacc agaccagtgg ataaagcgcc accaaaccgc
    10621 ttaaaaacag cggagttgca acgtagcccg cgaagaccat gcagtgcgca agtgacggac
    10681 gctgcggata attacgcgcc atccaccaga tgacccgccc cattaccgca accccagcca
    10741 gcataacgcc ataaaacagg acagccagcg ccagtccggt aaaccaggat aacttcagga
    10801 tagtgccatc gccaaaattc cagccaatct gtgtagtgcc aatgaaggcg caaatcaccg
    10861 gaatcgccgc catcagcaaa acgtggtggg tgtaatggtg agaaatcgtt tcgttttcgc
    10921 gattaatcac ctgcatttca cgatcgggat gggaaaacag tccccagaca tggctcatac
    10981 cgcccccttg ttgtgagttc atgaacctga cagttcaagt ataagtcagc ttgtgattat
    11041 tttttgttcg ctcatgtaat ttgcaccgtc tgatgtacgt cctttttcag cgtgaatgat
    11101 ttccagggtg tatgcttaca ggcaaccaaa gggagacaga ctggcctatg gatctcaata
    11161 cactcatctc acaatatggt tatgccgcgc tggtgatcgg tagcctggcg gaaggtgaaa
    11221 ccgtgacttt gctgggaggc gttgcggcac atcaggggct attaaagttc ccgctggtgg
    11281 tactttctgt ggcgcttggc ggcatgattg gcgaccaggt gctttatctg tgcgggcggc
    11341 ggtttggcgg caagctgtta cgccgtttct cgaaacatca ggataaaatt gagcgggcgc
    11401 agaaacttat ccaacgccat ccgtatctgt ttgtcattgg tacgcgcttt atgtatggct
    11461 ttcgggtgat tggcccgacg ctgattggtg ccagccagct gccgccgaaa atctttctgc
    11521 cgctgaatat tctcggcgca tttgcctggg cgttgatttt taccactatt ggttacgctg
    11581 gtggtcaggt gattgcgccg tggttgcaca atctcgacca gcatttgaag cactgggtct
    11641 ggttgattct ggtcgtggtt ctggtggtgg gcgtgcgctg gtggctgaaa cggcgcggga
    11701 agaaaaagcc ggatcatcag gcgtaaaacc attgccctgg gtaaggcgtt cgcgccgcat
    11761 ccgacatccg gtgcaccatg cctgatgcga cgcttgtgcg tcttatcatg cctaccaaaa
    11821 ttttacccat tgaaataacc acgcacctca ctgcgctatt ctgggttgaa ctgcggattc
    11881 gccaacataa agccgccatc cactatcaac gactgcccgg tggtgtaatt tgcgccctct
    11941 gagcacagcc acgctaccag gctggcaatc tcatgcgttg cgccaaaacg ccgcagagga
    12001 atcgaaggct ccgcgtcggg cttcacgtcg ctgtcatcca tgccattcat tggcgtggcg
    12061 atcgccccag gcgcgactgc gttcaccaaa atcttatgcc tgaccagctc cagcgccatc
    12121 gctttggtta acccaccgag cgcatgttta gcggctgtgt aggcgctggc atccggcagc
    12181 ggcgtatgtt catgtaccga tgtaatgttg atgatgcgac cgccctgccc ttgtttcacc
    12241 atctggcggg ccgcaatttg tgagcataaa aatgcaccat cgacatcaac ggtaaaaatc
    12301 ttgcgccact catcgaaagc catatcaaga aacggcgctt tggtcattgc gcccgcatta
    12361 ttcaccagca catcaatacg ccccagccgt tgaatgagtt tctccagcgc ctgcgcacct
    12421 tctggcagtt taccgagatc cagctgcacg atctccgcac gtacgccgtg gctaactacc
    12481 tcacgcgcgg tatcttttgc cccttcttca tctgagtgcc aggtaatgcc aatatcaaac
    12541 ccttgctgcg ccagtaataa cgcgcactct ttgccgatcc ccgaatcgga ggcggtaata
    12601 atcgcaacct gtgccatcga gttctccact taacgctgaa taaacgttaa gtatagaagg
    12661 cgcatatcat cagcgtttgt aacccccgcc caacgcacca gtgagttgaa tggaggcatc
    12721 cagccactgc ccttgcaata acaggccatt ggcccgctca cgcagcgcgg ggattctggc
    12781 ttcgctgacg cgggaaccag caatgatgcc cgcgttaaag cgcgcctgcg caagacctac
    12841 cacacgcaag gtatcgcgct caatttgcgc ctgatgctgg tttttctccg caagtgtctg
    12901 aacctgactg gctgcccgcg ccacgtcatt caccgcttca accaccgctt tgttgtagct
    12961 ggcgatagac aagttgcttt cggcttttgc gatatcgaga ttggcgttaa gacgaccact
    13021 atcgaaaatg ggtagcgtca ggcctgccgt aacgcccatt tgctg
//
LOCUS       DAJVUP010000117        12990 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.117, whole genome shotgun sequence.
ACCESSION   DAJVUP010000117 DAJVUP010000000
VERSION     DAJVUP010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12990
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.117"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(16..522)
                     /gene="mug"
                     /locus_tag="OQQ75_002999"
     CDS             complement(16..522)
                     /gene="mug"
                     /locus_tag="OQQ75_002999"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HCS1977245.1"
                     /translation="MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQA
                     GFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQ
                     ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
                     QALVVRGR"
     gene            647..722
                     /locus_tag="OQQ75_003000"
     tRNA            647..722
                     /locus_tag="OQQ75_003000"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:680..682,aa:Ile,seq:cat)
     gene            complement(776..1540)
                     /gene="nfeF"
                     /locus_tag="OQQ75_003001"
     CDS             complement(776..1540)
                     /gene="nfeF"
                     /locus_tag="OQQ75_003001"
                     /EC_number="1.16.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent ferric chelate reductase"
                     /protein_id="HCS1977246.1"
                     /translation="MNNSPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDG
                     FTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAID
                     FFIHDGGGASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLET
                     LSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYF
                     IWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK"
     gene            1828..2451
                     /gene="nfeR"
                     /locus_tag="OQQ75_003002"
                     /gene_synonym="yqjI"
     CDS             1828..2451
                     /gene="nfeR"
                     /locus_tag="OQQ75_003002"
                     /gene_synonym="yqjI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NfeR"
                     /protein_id="HCS1977247.1"
                     /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG
                     GRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP
                     TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ
                     NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD"
     gene            complement(2605..4125)
                     /gene="aer"
                     /locus_tag="OQQ75_003003"
     CDS             complement(2605..4125)
                     /gene="aer"
                     /locus_tag="OQQ75_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerotaxis sensor receptor Aer"
                     /protein_id="HCS1977248.1"
                     /translation="MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFT
                     LQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPM
                     VREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLP
                     LRWRARGVMTLMFILLAAMLWFVAAPVVTYFLCVLVVLLASACFEWQIVRPIENVARQ
                     ALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAK
                     GTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSIIASNAAVQGGEAM
                     TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
                     VRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS
                     HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH"
     gene            4542..5921
                     /gene="ygjG"
                     /locus_tag="OQQ75_003004"
     CDS             4542..5921
                     /gene="ygjG"
                     /locus_tag="OQQ75_003004"
                     /EC_number="2.6.1.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417544.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine aminotransferase"
                     /protein_id="HCS1977249.1"
                     /translation="MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKE
                     HVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPV
                     VVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKL
                     AKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAM
                     RTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTG
                     MGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFG
                     GNPLACAAALATINVLLEQNLLAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMA
                     IEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALA
                     AMRVSVEEA"
     gene            complement(5963..6295)
                     /locus_tag="OQQ75_003005"
     CDS             complement(5963..6295)
                     /locus_tag="OQQ75_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-binding protein"
                     /protein_id="HCS1977250.1"
                     /translation="METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGEKTLQ
                     TVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERM
                     MPAGVRVV"
     gene            6514..7497
                     /gene="ebgR"
                     /locus_tag="OQQ75_003006"
     CDS             6514..7497
                     /gene="ebgR"
                     /locus_tag="OQQ75_003006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator EbgR"
                     /protein_id="HCS1977251.1"
                     /translation="MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEK
                     LEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTN
                     CYEHSGLPDIKNVTGILIVGKPTPALRAAACALTDNICFIDFHEPGSGYDAVDIDLAR
                     ISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSS
                     SSGYELAKQMLAQEDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTAR
                     FTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR"
     gene            7681..10773
                     /gene="ebgA"
                     /locus_tag="OQQ75_003007"
     CDS             7681..10773
                     /gene="ebgA"
                     /locus_tag="OQQ75_003007"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit alpha"
                     /protein_id="HCS1977252.1"
                     /translation="MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPL
                     SGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVP
                     FVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEF
                     DISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRT
                     DFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASF
                     AFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYV
                     MLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGL
                     FVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNES
                     GYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPR
                     IICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGD
                     YGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTT
                     LDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSR
                     TRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKM
                     SGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQ
                     SDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFT
                     MGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRW
                     TALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLG
                     SNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ
                     "
     gene            10770..11219
                     /locus_tag="OQQ75_003008"
     CDS             10770..11219
                     /locus_tag="OQQ75_003008"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit beta"
                     /protein_id="HCS1977253.1"
                     /translation="MRIIDNLEQFRQIYASSKKWQRCVEAIENIDNIQPGVAHSIGDS
                     LTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLK
                     GCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK"
     gene            11282..12715
                     /locus_tag="OQQ75_003009"
     CDS             11282..12715
                     /locus_tag="OQQ75_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1977254.1"
                     /translation="MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFF
                     LATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTS
                     LLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLM
                     LLLTLSYILLAGTALVGGVQPADPITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVY
                     VNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAY
                     FGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPA
                     RAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLD
                     HLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFA
                     WWKYSKYIKGLTAEERHIEATPASNVD"
     gene            12849..>12990
                     /locus_tag="OQQ75_003010"
     CDS             12849..>12990
                     /locus_tag="OQQ75_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977255.1"
                     /translation="MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTS
                     SPS"
BASE COUNT         3130 a         3489 c         3249 g         3122 t
ORIGIN      
        1 tttcggtggc gttttttatc gcccacgcac taccagcgcc tggtccagct cgcgatacgc
       61 ttcaaccagt ttctctagtg aaacgcgact taaaccgctg ggatttggca gcacccaaat
      121 ctgcgtcgaa ccaatggtga gcgtttgttt cccccactgt gcaccgcgct ggctgaatcc
      181 ctgttcatat gcttgtttgc ccagaatcgc caacgcctgc ggctgataat cttcaatttt
      241 ttcaatcagc ttacgcccac ctgcgtgcag ctcctgcttt gaaacttcat tggcttgcac
      301 cgttggacgg tctaccagtt tggtgacgcc acaacgataa tccagcagat gctgtgcctc
      361 ctgcggcttc aactgacggt cggtaaaccc ggcctgatat atcaccttcc agaagcgatt
      421 tgctggatga gcaaagggaa aaccagtccc ggcggatgaa agcccagggt tgataccgca
      481 aaacacgacc cgtaaccctg gagccaaaat atcctcaacc atatttactc ctttctaaca
      541 tcaccaggaa aagtataacg gattgaaaat acattgttta taaaaacagc aggcgcacgg
      601 taatggctgg attgcgacac ggagttactt tataatccgc taccatggcc ccttagctca
      661 gtggttagag caggcgactc ataatcgctt ggtcgctggt tcaagtccag caggggccac
      721 cagatatagc aaaggctgac gagaaatcgt cagccttttt ctttttatat ctcagttact
      781 ttgcgtgcca gtaagccgct gcacgtaccc gctgtgggtc atactgttcc gcttcaaagc
      841 ggcggcttaa attcttaacg actttacctt cgccggttat ccagatgaag taatcatcgg
      901 cagggatttg catctgcgcc agacgcgcat ctaccgcctg ctcatcatgt gccagccatt
      961 cgatattaaa accatcaagg tgcgcgagat aatcctgaca ggcgttatcc cgcacgctaa
     1021 ccagcgcact aacttgcggt ttaacggcaa gtttgctcaa cgtttccagg cggcggcgca
     1081 gtgcgggcat tccggattca tcgcagacat acagctgata cgcgtaatct tccggcacca
     1141 ccagcgaacc gcgcggacca gccaccgtaa gtttatcgcc cggttgcgcc tgcatcgccc
     1201 agccgctggc gcccccaccg tcgtgaataa agaaatcgat cgccagttca tggcgtagtt
     1261 cgtcatacag cggcgtatag tcacgcgacg gtgggcgtgg tccttccggc cagacgatgc
     1321 cctcttccgt taccgttggc ggcacaaagt gagcgtcagg ttgaggaaag aagagtttgc
     1381 tgtgatcgtc aaagccgcgc gatgtaaaac cgtccagcgc ctcgccgccg aggacaatgc
     1441 gctgaaaacc ggcgctgatg cgctcaacgc gtaacacagt cagttcacgg aagcgcagat
     1501 cattgcgaac gcgctgcggg tagcgggggg agttattcat tgttatcgcc ttcgtgatgg
     1561 taatcagata tatctaaata attttcgtaa atgataatga ttgttaatca tgataaatgc
     1621 aagcgattag tagaactgat atgtctatag tctgataaga cgaaccgcct cttctcaggc
     1681 atcattactc aacgccggat gcggcgtgaa cgccttatcc ggcctacgtg tgagatgagt
     1741 ccacatttaa aaatcatttt tattcttgca agagtgctca tatcagatat aaattagata
     1801 tatctaatca agaaaaagga ggctgatatg agccatcatc acgaagggtg ttgtaaacat
     1861 gaaggccagc cacgccatga gggctgctgc aaaggtgaga agtcagaaca cgagcactgc
     1921 ggacacggtc accagcatga acacggtcaa tgctgcggtg gtcgccacgg tcgcggcggc
     1981 ggtcgtcggc aacgtttctt tggtcacggt gaattgcgtc tggtgattct ggatattctc
     2041 tcgcgcgatg acagccacgg ttacgaattg attaaagcga ttgagaatct aacccagggg
     2101 aattacaccc caagcccggg cgtcatctac ccaacgctgg attttctgca ggagcagtcg
     2161 ctgattacca tccgcgaaga ggaaggtggt aagaagcaga ttgcgctgac cgaacaaggc
     2221 gcgcagtggc tggaagaaaa ccgcgaacag gtggagatga ttgaagaacg catcaaagcg
     2281 cgttgcgttg gcgcggcgct gcgccagaac ccgcaaatga agcgggcgct ggataatttt
     2341 aaagcggtgc tggatttacg cgtcaaccag agcgatatca gtgatgcaca aataaaaaag
     2401 atcattgcgg tgatcgaccg cgccgctttt gatattacgc aactggatta atcgccgcat
     2461 ccgccagtgg cgcggtgcaa ttgccggatg cgacgcttga cgcgccttat ccggcctaca
     2521 cccactacac accccgcagg cctgataaga tgcgccagca tcgcatcagg cattgtgctc
     2581 caaccgccgg atccggcata ccgattaatg cagcaccgtc accgcgtctt ccagtcggct
     2641 ggcgcggtgt ttcaccatcg ccgacacctg cgcactctct tccaccagct cagcattttt
     2701 ctgggtgatc aggttaagct catccactgc acgggtcagg ctggaaagcc catcggcctg
     2761 ttccagcgtt gaatggctaa tctgggcgat caactgggtg acgtttttca cctgtgccac
     2821 aatatcttcc atcgtccgtc cggcggcgtg tacctgctgc gaaccggatt gcaccttatc
     2881 agcactggca tcaatcagct tgcgaatatc gttggcagca ttagcgctgc ggctggctaa
     2941 atgacgcact tcccctgcca ccactgcaaa acctttgccc tgttcgccgg cacgcgccgc
     3001 ttccaccgcc gcattcaggg ccagaatatt ggtctgaaac gcaatatcgt taatcagcga
     3061 agtaatggtg ccaatgcgct gggtactgtc ggcgatatcg tccattgtct tgatcaccgt
     3121 ggtcatcgcc tccccaccct gcactgccgc attactggcg atgatagaaa gtttatcggc
     3181 agccgacgcc gtggcagagt tctgtttcac cgacgccgcc atttggttca tggtcgccac
     3241 cgtttgctga acgttatcaa ctgtctgctg ggtatgttcg ttcagttcat cggtgccttt
     3301 cgccagcgtc tcactgccat ttctgacact ggacacctgg cttgagacat cgttaattag
     3361 ccaacggcac atcaggccaa gctgccctac cgcgcgtaat gtcagcccca gctcatcgct
     3421 gcgattcagg tgctcaacac tattacgctc tccggtcgcc accttcagtg cctgacgggc
     3481 gacattttct atcgggcgca caatctgcca ttcaaaacaa gcgcttgcca acaataccac
     3541 taacacacag aggaaatacg tcaccaccgg ggcagcaaca aaccaaagca tggccgccag
     3601 caagataaac atcagggtca tcactccacg cgcccgccag cgaagcggta atgaaggcag
     3661 tttacccagc cagcctttac gcaccaccag gcctttatga atacgcttac tggtacgtcc
     3721 ggcgttcagc gctttgtaca gcggctccac cgccgcaatc tcttcatccg tcgcccgggt
     3781 acgaatcgac atatagccac tgatttttcc ctcgcgcacc atcggtaccg cattggcccg
     3841 cacccaataa tggtcgccat ttttgcggcg atttttcacg atgccgctcc agggctcccc
     3901 ttttttcagg gtgaaccaca tatccgcaaa cgccgctttt ggcatatccg ggtgacgcac
     3961 catgttgtgc ggctgccctt gtaactcttg caaggtaaag ccgctcacct gcacaaaagt
     4021 gtcattagca tgagtgatat agctttgcag atcggtagtg gacatcagag tggtatcgtc
     4081 cgccagcggg gtattttgct gggtgacata cggatgagaa gacatgttcg cgtcctatgc
     4141 aggttatatg gttgttaact tcttgtcaga gtttatgtcg gccccgctgc ggttatcttt
     4201 aaccgattaa tttgatttag atcgcaattt gcgattaaag cacaaatcta attccttgat
     4261 ttaaaatact ttcactctgt tactatacga aaacgttaat tatcttgccc aaaatcaggc
     4321 aattatcgcc ctgaaaacgt gcatttgcac agcaatcatc aaatccatac ccgacaaaaa
     4381 ccgtgcaaaa taacaacgaa tgttaacaaa tagcattaaa tactgcgcaa atgataacca
     4441 catttgtgtt tatcccgatt ttcgcgatcg cagccggagt ggcgcaatcc ctgcaatact
     4501 taaatcggta tcatgtgata cgcgagcctc cggagcatat tttgaacagg ttaccttcga
     4561 gcgcatcggc tttagcgtgc agcgcccacg ccctgaatct cattgagaag cgaacgctgg
     4621 atcatgagga gatgaaagca cttaaccgag aggtgattga atacttcaaa gagcatgtca
     4681 atccggggtt tttagagtat cgcaaatctg ttaccgccgg cggggattac ggagccgtag
     4741 agtggcaagc gggaagttta aatacgcttg tcgacaccca gggacaggag tttatcgact
     4801 gcctgggagg ttttggaatt ttcaacgtgg ggcaccgtaa tccagttgtg gtttccgccg
     4861 tacagaatca acttgcgaaa caaccgctgc acagccagga gctgctcgat ccgttacggg
     4921 cgatgttggc gaaaaccctt gctgcgctaa cgcccggtaa actgaaatac agcttcttct
     4981 gtaatagcgg caccgagtcc gttgaagcag cgctgaagct ggcgaaagct taccagtcac
     5041 cgcgcggcaa gtttactttt attgccacca gcggcgcgtt ccacggtaaa tcacttggcg
     5101 cgctgtcggc cacggcgaaa tcgaccttcc gcaaaccgtt tatgccgtta ctgccgggct
     5161 tccgtcatgt gccgtttggc aatatcgaag ccatgcgcac ggctcttaac gagtgcaaaa
     5221 aaaccggtga tgatgtggct gcggtgatcc tcgaaccgat tcagggtgaa ggtggcgtaa
     5281 ttctgccgcc gccgggctat ctcaccgccg tacgtaagct atgcgatgag ttcggcgcac
     5341 tgatgatcct cgatgaagta caaacgggca tggggcgcac gggcaagatg ttcgcctgcg
     5401 agcatgagaa cgtacagccg gatatcctct gccttgccaa agcgctcggc ggcggcgtga
     5461 tgccgattgg cgcgaccatc gccactgaag aggtgttttc agttctgttc gacaacccat
     5521 tcctgcatac caccaccttt ggcggcaacc cgctggcctg tgcggcggcg ctggcgacca
     5581 tcaatgtgtt gctggagcag aacttactgg ctcaggctga gcaaaaaggc gatatgttgc
     5641 tggacggttt ccgtcaactg gcgcgggaat atcccgatct ggtacaggaa gcgcgtggta
     5701 aagggatgtt gatggcaatt gagtttgttg ataacgaaat cggctataac tttgccagcg
     5761 agatgttccg ccagcgcgta ctggtggccg gaacgctcaa taacgccaaa acgatccgca
     5821 ttgaaccgcc actgacactg accattgaac agtgtgaact ggtgatcaaa gcggcgcgta
     5881 aggcgctggc ggccatgcga gtaagtgtcg aagaagcgta atatcaaatc ggatggcgat
     5941 acgacgtcgc catccgatct ttttatacga cgcgtacgcc cgcaggcatc atccgctccg
     6001 gcgttaacaa cacgctttca ctgccgtcat cggtttccgc acacaacagc atgcattccg
     6061 acgtttcacc acgcattttc gctttttgca gattgcataa gaccaccacc gttttcccca
     6121 tcagctcttc ttcgctgtag tacggcacca ggctggtcac ggtttgcagt gttttttccc
     6181 ccacatcaac ctgtacgatg tacagcttgt cggcgttttc atggcgtttc acttccacaa
     6241 tctttccgac gcgcatttcc agacgtgcaa aatcagcgta agccacggtt tccattgttt
     6301 ccttccttcg ggtaaaattt tactaaacta tagcaaaagt ttttctcaat cctgtaggct
     6361 aaaaatggag aatgcaggcg tgatcacatt cgtgagccgc tgtgttaccg ttacagcgtc
     6421 aaagaaacgc gctttattta ctgaaaacag gtgacccgat aagtacttcc tctacaatgg
     6481 gggcgcacat cagggaaagt aaaaaaggta aacatggcaa cactaaaaga catcgcaatc
     6541 gaagctggcg tatccctggc gacagtatcc agggtcttaa atgacgatcc gacattgaat
     6601 gtgaaagaag agacgaaaca tcgcattctc gagatcgccg aaaagctgga gtacaagacc
     6661 agtagtgccc gcaaactcca gacaggtgca gtcaaccaac accatattct ggctatctac
     6721 agctaccaac aggagctgga gatcaacgat ccttactatc tggcgatccg ccacggcatt
     6781 gaaactcagt gcgaaaagct gggcattgag ctcaccaact gttatgaaca cagcggatta
     6841 ccagacatta aaaacgtcac cggtatttta attgtcggca aacccacgcc cgcccttcgc
     6901 gccgccgcct gtgcgttgac cgacaatatc tgttttatcg actttcacga acccggcagc
     6961 ggttacgatg cggtggatat cgatctggca cgcatcagta aagaaatcat cgacttctat
     7021 atcaatcagg gcgttaatcg tattggtttt attggcggtg aagatgagcc aggcaaagcg
     7081 gatattcgtg aggtcgcctt tgcggaatat ggccgactga aacaagtggt acgcgaagag
     7141 gatatctggc gcggaggctt ttccagttcg tcgggttatg aactggcaaa acagatgctg
     7201 gcgcaggaag actatccgaa ggcactgttt gttgcttccg attccattgc tatcggcgta
     7261 ctgcgggcaa ttcatgaacg aggcctgaac atcccacagg atatttcgct tatcagcgtt
     7321 aacgatatcc ccaccgcgcg atttaccttt ccgccgctct ccaccgtgcg catccattcc
     7381 gagatgatgg gaagtcaggg cgttaacctg gtgtatgaaa aagcccgcga tggtcgcgcg
     7441 ctgccgctgt tagtcttcgt tcccagcaaa ttaaaactgc gcggcacgac ccgttaaatc
     7501 cccttacaca ctgtccggca atcgtttttg ccggacagtg ctgccgttta ttttcgtgat
     7561 ccagttaaag taaatgcatt tatctgctac tttttagtaa aaattttact aaactcccca
     7621 gcaattacac aaactaccat caccatgaat ggttccgatt tctctctacc gggaggccct
     7681 atgaatcgct gggaaaacat tcagctcacc cacgaaaacc gacttgcgcc gcgtgcgtac
     7741 tttttttcat atgattctgt tgcgcaagcg cgtacctttg cccgcgaaac cagcagcctg
     7801 tttctgccct taagcggtca gtggaatttc cacttttttg accatccgct gcaagtacca
     7861 gaagccttca cctctgagtt aatggctgac tgggggcata ttaccgtccc cgccatgtgg
     7921 caaatggaag gtcacggcaa actgcaatat accgacgaag gttttccgtt ccccatcgat
     7981 gtgccgtttg tccccagcga taacccaacc ggtgcctatc aacgtatttt caccctcagc
     8041 gacggctggc agggtaaaca gacgctgatt aaatttgacg gcgtcgaaac ctattttgaa
     8101 gtctatgtta acggtcagta tgtgggtttc agcaagggca gtcgcctgac cgcagagttt
     8161 gacatcagcg cgatggttaa aaccggcgac aacctgttgt gtgtgcgcgt gatgcagtgg
     8221 gcggactcta cctacgtgga agaccaggat atgtggtggt cagcggggat cttccgcgat
     8281 gtttatctgg tcggaaaaca cctaacgcat attaacgatt tcactgtgcg taccgacttt
     8341 gacgaagcct attgcgatgc cacgctttcc tgcgaagtgg tgctggaaaa tctcgccgcc
     8401 tcccctgtcg tcacgacgct ggaatatacc ctgtttgatg gcgaacgcgt ggtgcacagc
     8461 agcgccattg atcatttggc aattgaaaaa ctgaccagcg ccagctttgc ttttactgtc
     8521 gaacagccgc agcaatggtc agcagaatcc ccttatcttt accatctggt catgacgctg
     8581 aaagacgcca acggcaacgt tctggaagtg gtgccacaac gcgttggctt ccgtgatatc
     8641 aaagtgcgcg acggtctgtt ctggatcaat aaccgttatg tgatgctgca cggcgtcaac
     8701 cgtcacgaca acgatcatcg caaaggccgc gccgttggaa tggatcgcgt cgagaaagat
     8761 ctccagttga tgaagcagca caatatcaac tccgtgcgta ccgctcacta cccgaacgat
     8821 ccgcgttttt acgaactgtg tgatatctac ggcctgtttg tgatggcgga aaccgacgtc
     8881 gaatcgcacg gctttgctaa tgtcggcgat atcagccgta ttaccgacga tccgcagtgg
     8941 gaaaaagtct acgtcgagcg cattgttcgc catatccacg cgcagaaaaa ccatccgtcg
     9001 atcatcatct ggtcgctggg caatgaatcc ggctatggct gtaacatccg cgcgatgtac
     9061 catgcggcga aagcgctgga tgacacgcga ctggtgcatt acgaagaaga tcgcgatgct
     9121 gaagtggtcg atattatttc caccatgtac acccgcgtgc cgctgatgaa tgagtttggt
     9181 gaatacccgc atccgaagcc gcgcatcatc tgtgaatatg ctcatgcgat ggggaacgga
     9241 ccgggcgggc tgacggagta ccagaacgtc ttctataagc acgattgcat tcagggtcat
     9301 tatgtctggg agtggtgcga ccacgggatc caggcacagg acgaccacgg caatgtctgg
     9361 tataaattcg gcggcgacta cggcgactat cccaacaact ataacttctg tcttgatggt
     9421 ttgatctatt ccgatcagac gccgggaccg ggcctgaaag agtacaaaca ggttatcgcg
     9481 ccggtaaaaa tccacgcgcg ggatctgact cgcggcgagt tgaaagtcga aaataaactg
     9541 tggtttacca cgcttgatga ctacaccctg cacgcagagg tgcgcgccga aggtgaaacg
     9601 ctcgcgacgc agcagattaa actgcgcgac gttgcgccga acagcgaagc ccccttgcag
     9661 atcacgctgc cgcagctgga cgcccgcgaa gcgttcctca acattacggt gaccaaagat
     9721 tcccgcaccc gctacagcga agccgggcat tctatcgcca cttatcagtt cccgctgaag
     9781 gaaaacaccg cgcagccagt gcctttcgca ccaaataatg cgcgtccgct gacgctggaa
     9841 gacgatcgtt tgagctgcac cgttcgcggc tacaacttcg cgatcacctt ctcaaaaatg
     9901 agtggcaaac cgacatcctg gcaggtaaat ggcgagtcgc tgctgacccg cgagccaaag
     9961 atcaacttct tcaagccgat gatcgacaac cacaagcagg agtacgaagg gttgtggcag
    10021 ccgaatcatt tgcagatcat gcaggaacat ctgcgcgact ttgccgtaga acagagcgat
    10081 ggtgaagtgt tgatcatcag ccgcacagtt attgcaccgc cggtgtttga cttcgggatg
    10141 cgctgtacct acatctggcg catcgctgcc gatggccagg ttaacgtggc gctttccggc
    10201 gagcgttacg gcgactatcc gcacatcatt ccgtgcatcg gtttcaccat ggggattaac
    10261 ggcgaatacg atcaggtggc gtattacggt cgtggaccgg gcgaaaacta cgccgacagc
    10321 cagcaggcta acatcatcga tatctggcgc agcaccgtcg atgccatgtt cgagaactat
    10381 cccttcccgc agaacaacgg caaccgtcag catgtccgct ggacggcact gactaaccgc
    10441 cacggcaacg gtctgctggt ggttccgcag cgcccaatta acttcagcgc ctggcactat
    10501 acccaggaaa acatccacgc tgcccagcac tgtaacgagc tgcagcgcag tgatgacatc
    10561 accctgaacc tcgaccacca gctacttggc ctcggctcca actcctgggg cagcgaggtg
    10621 ctggactcct ggcgcgtctg gttccgtgac ttcagctacg gctttacgtt gctgccggtt
    10681 tctggcggag aagctaccgc gcaaagtctg gcgtcgtatg agttcggcgc agggttcttt
    10741 tccacgaatt tgcacagcga gaataagcaa tgaggatcat cgataactta gaacagttcc
    10801 gccagattta cgcctctagc aagaagtggc aacgctgcgt tgaagcgatt gaaaatatcg
    10861 acaacattca gcctggcgtc gcccactcca tcggtgactc attgacttac cgcgtggaga
    10921 cagactccgc gaccgatgcg ctatttaccg ggcatcgacg ctattttgaa gtgcattact
    10981 acctgcaagg gcagcaaaaa attgaatatg cgccgaaaga gacattacag gtagtggaat
    11041 attatcgtga tgaaactgac cgtgaatatt taaaaggctg cggagaaacc gttgaggtcc
    11101 acgaagggca aatcgttatt tgcgatatcc atgaagcgta tcggtttatc tgcaataacg
    11161 cggtcaaaaa agtggttctc aaagtcacca tcgaagatgg ttatttccat aacaaataac
    11221 aactacggcg gcaaaaggag tttgccgcca ccgctaccct acacattttc ggagatgtgt
    11281 tatgtctgat accaaacgta atacaatcgg caaattcggc ttgctctcgc tgacttttgc
    11341 tgccgtttac agctttaaca acgttatcaa taataatatt gagcttggac tggcctcggc
    11401 accgatgttt ttcctcgcga cgatttttta ttttattccc ttctgtctga tcatcgcaga
    11461 atttgtttcg ttaaataaaa actcagaagc cggtgtctac gcgtgggtaa aaagttcgct
    11521 gggcggacgt tgggcattta ttactgccta tacctactgg ttcgtaaacc tgttcttttt
    11581 cacctcactg ttgccgcgcg ttattgctta tgcttcgtat gccttcctcg gatacgaata
    11641 tattatgacg ccggttgcca ccaccattat cagtatggtg ctgttcgcct tctccacctg
    11701 ggtttccacc aacggggcga aaatgttggg gccaattacc tccgtcactt caacgctgat
    11761 gctgctgtta acgctctcct acattttact ggcaggtacg gcgctggttg gcggcgtaca
    11821 gcctgctgac cccatcaccg ttgacgcgat gatcccgaac ttcaactggg cgttcctcgg
    11881 cgttaccacc tggatcttta tggccgcagg tggcgcggag tccgtcgctg tgtacgttaa
    11941 cgacgtcaaa ggcggttcga aatcgttcgt taaagtgatc atcctcgccg ggatttttat
    12001 cggcgtactg tattccgtct cctcggtgct gattaacgtc ttcgtcagca gcaaagagtt
    12061 gaaatttacc ggcggatcgg tgcaggtatt ccatggcatg gcggcgtatt ttggtctacc
    12121 ggaagcgttg atgaatcgct ttgtcggtct ggtgtccttt accgcgatgt tcggttccct
    12181 gctgatgtgg accgcaacgc cggtgaaaat tttcttctcc gaaatcccgg aaggcatctt
    12241 tggtaagaaa accgtcgaac tgaacgaaaa cggcgttccg gcgcgcgcag cgtggatcca
    12301 gttcctgatc gtcatcccgc tgatgattat cccgatgctc ggttccaata ccgtgcagga
    12361 tctgatgaat actattatta atatgaccgc cgcagcgtcc atgcttccgc cgttattcat
    12421 catgctggct tacctgaatt tacgcgccaa attagatcac ctgccacgcg atttccgtat
    12481 gggctcccgc cgcaccggta ttatcgttgt ttcaatgctg attgcgatat ttgccgtagg
    12541 gtttgtcgct tcgacattcc cgactggcgc gaatattctg accatcattt tttataacgt
    12601 cggcggtatt gttatcttcc ttggctttgc gtggtggaaa tacagtaaat atataaaggg
    12661 attaacggct gaagagcgcc atattgaagc gacgccagcc agcaatgttg attaagcaga
    12721 ataataaaaa atgagcaggc attttccctc ttcctggatg aggagaggga aaatagtttc
    12781 tgcctttata tttttataat tacaacgata aaaggctgta ctttttcttt agctcatgga
    12841 ttaacacaat gaaattaatc actgcaccat gcagagcatt acttgctctg ccgttttgct
    12901 acgccttttc tgcggcagga gaagaagcac gtccggcaga acatgacgac acaaaaacac
    12961 ccgcaattac ctcgacatct tctccttcat
//
LOCUS       DAJVUP010000118        12986 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.118, whole genome shotgun sequence.
ACCESSION   DAJVUP010000118 DAJVUP010000000
VERSION     DAJVUP010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12986
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.118"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..605
                     /gene="mxiE"
                     /locus_tag="OQQ75_003011"
     CDS             <1..605
                     /gene="mxiE"
                     /locus_tag="OQQ75_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type III secretion system transcriptional
                     activator MxiE"
                     /protein_id="HCS1977256.1"
                     /translation="NIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALVEHSHAEKCIH
                     FYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLVLYLLRTIEKE
                     KEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVFLHNQTITSAA
                     MNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
     gene            592..2292
                     /gene="mxiD"
                     /locus_tag="OQQ75_003012"
     CDS             592..2292
                     /gene="mxiD"
                     /locus_tag="OQQ75_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system secretin MxiD"
                     /protein_id="HCS1977257.1"
                     /translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
                     VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKMTLLVGLIWYKDGNAL
                     YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
                     LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
                     NNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
                     VKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
                     SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
                     LVGERNSSLEHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
                     EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTRNISN
                     IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
                     "
     gene            2311..3378
                     /gene="mxiC"
                     /locus_tag="OQQ75_003013"
     CDS             2311..3378
                     /gene="mxiC"
                     /locus_tag="OQQ75_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system gatekeeper subunit
                     MxiC"
                     /protein_id="HCS1977258.1"
                     /translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
                     IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
                     LDQDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVESLTKIINEIISGSEKSVNAG
                     INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
                     EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
                     QLLLTLLYIFQYPSESEQILTSVIDVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
                     EIAINILRELVTSAYKKELSR"
     gene            3391..5451
                     /gene="mxiA"
                     /locus_tag="OQQ75_003014"
                     /gene_synonym="virH"
     CDS             3391..5451
                     /gene="mxiA"
                     /locus_tag="OQQ75_003014"
                     /gene_synonym="virH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein MxiA"
                     /protein_id="HCS1977259.1"
                     /translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
                     IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
                     GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
                     HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
                     NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
                     GTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKISANDMEGLIERIRSQFFIDY
                     GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
                     SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
                     QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
                     LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
                     VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
                     LKTI"
     gene            5464..5865
                     /gene="spa15"
                     /locus_tag="OQQ75_003015"
                     /gene_synonym="spaK"
     CDS             5464..5865
                     /gene="spa15"
                     /locus_tag="OQQ75_003015"
                     /gene_synonym="spaK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone Spa15/SpaK"
                     /protein_id="HCS1977260.1"
                     /translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
                     IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
                     VIKDDYVHDGIVFAEILHEFYQRMEILNEVL"
     gene            5869..7161
                     /gene="spaL"
                     /locus_tag="OQQ75_003016"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
     CDS             5869..7161
                     /gene="spaL"
                     /locus_tag="OQQ75_003016"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system ATPase SpaL"
                     /protein_id="HCS1977261.1"
                     /translation="MSYIKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
                     IIARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
                     TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFAS
                     AGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
                     SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
                     SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
                     QKGQFPAIDSLKSISRVFTQVVDEKHRIMATAFRELLSEIEELRTIIDFGEYKPGENA
                     SQDKIYNKISVVESFLKQDYRLGFTYEQTMELLGETIR"
     gene            7254..7592
                     /gene="spa13"
                     /locus_tag="OQQ75_003017"
                     /gene_synonym="spaM"
     CDS             7254..7592
                     /gene="spa13"
                     /locus_tag="OQQ75_003017"
                     /gene_synonym="spaM"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858283.1"
                     /note="Not similar to SpaM from Salmonella T3SS; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein Spa13"
                     /protein_id="HCS1977262.1"
                     /translation="MEALDKRIIYFLQLENDLEPVGAQSVSQLFNTRRKIAIVKKHII
                     QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
                     SQEDMKYGIR"
     gene            7579..8457
                     /gene="spa32"
                     /locus_tag="OQQ75_003018"
     CDS             7579..8457
                     /gene="spa32"
                     /locus_tag="OQQ75_003018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle length
                     regulator Spa32"
                     /protein_id="HCS1977263.1"
                     /translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
                     SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
                     DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
                     LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
                     MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
                     NKNNSTGYNEQSEEEC"
     gene            8451..9332
                     /gene="spa33"
                     /locus_tag="OQQ75_003019"
                     /gene_synonym="spaO"
     CDS             8451..9332
                     /gene="spa33"
                     /locus_tag="OQQ75_003019"
                     /gene_synonym="spaO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000944309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctQ family type III secretion system ring
                     protein Spa33"
                     /protein_id="HCS1977264.1"
                     /translation="MLRIKHFDANEKLQILYAKQLCERFSIQTFKNKFTGSESLVTLT
                     SVCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSSVFSIPELSDKITF
                     RITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDLLHHLLEFCLGSSNVRLA
                     TLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSESNGESDHTEVSLAL
                     FNYDDINVKVDFILLEKKMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELV
                     SIEDGYGIEISSWMVKE"
     gene            9337..9987
                     /gene="spa24"
                     /locus_tag="OQQ75_003020"
                     /gene_synonym="spaP"
     CDS             9337..9987
                     /gene="spa24"
                     /locus_tag="OQQ75_003020"
                     /gene_synonym="spaP"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa24/SpaP"
                     /protein_id="HCS1977265.1"
                     /translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
                     QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQY
                     LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
                     FIVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINVPA"
     gene            10002..10262
                     /gene="spaQ"
                     /locus_tag="OQQ75_003021"
     CDS             10002..10262
                     /gene="spaQ"
                     /locus_tag="OQQ75_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaQ"
                     /protein_id="HCS1977266.1"
                     /translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQE
                     QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
     gene            10262..11032
                     /gene="spa29"
                     /locus_tag="OQQ75_003022"
                     /gene_synonym="spaR"
     CDS             10262..11032
                     /gene="spa29"
                     /locus_tag="OQQ75_003022"
                     /gene_synonym="spaR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858288.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa29/SpaR"
                     /protein_id="HCS1977267.1"
                     /translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
                     IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
                     IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
                     FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
                     IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
     gene            11039..12067
                     /gene="spa40"
                     /locus_tag="OQQ75_003023"
                     /gene_synonym="spaS"
     CDS             11039..12067
                     /gene="spa40"
                     /locus_tag="OQQ75_003023"
                     /gene_synonym="spaS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     switch protein Spa40/SpaS"
                     /protein_id="HCS1977268.1"
                     /translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
                     FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
                     VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
                     SQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKRE
                     YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
                     ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
                     LEQVENTH"
     gene            12080..12322
                     /locus_tag="OQQ75_003024"
     CDS             12080..12322
                     /locus_tag="OQQ75_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977269.1"
                     /translation="MCYMGVNFCNKIGIDQSEFEIESSIINSIANEVLNPISFLSNKD
                     IINVLLRKISSECDLVRKDIYRCALELVVEKTPDDL"
BASE COUNT         4172 a         1842 c         2531 g         4441 t
ORIGIN      
        1 aaaatataaa attcagtgat aatgtgaact atcattatcg ctttaacatt aatagttgtg
       61 caaaatttct tgctttttgg gactatttca gtggtgctct agtagagcat agccatgctg
      121 aaaaatgtat tcatttctat catgagaatg atcttcggga tagttgtaat accgaatcga
      181 tgcttgataa gttaatgtta agattcatct tttcatctga ccagaatgta agtaatgcac
      241 tggctatgat acgaatgact gagtcatatc atttggttct ttatcttctg agaactattg
      301 agaaagaaaa ggaggtaaga ataaagagtc tgacagagca ttatggtgtg tcggaggctt
      361 attttagatc tttatgtaga aaagctttag gggcaaaagt caaagaacaa ctgaacactt
      421 ggcggttagt aaatggttta ttagatgtat ttttgcacaa tcaaacaatc acttctgctg
      481 ccatgaataa tgggtatgca tcaacatccc atttttcaaa tgagataaaa acacgactag
      541 gcttttctgc aagagaatta tcgaatatta cttttttagt gaaaaaaata aatgaaaaaa
      601 tttaatatta aatctttgac tctcttgatt gtattgttac cattgatagt taatgctaat
      661 aatattgact ctcatttatt agaacaaaat gacatagcga aatatgttgc tcaaagtgat
      721 acggtaggat ctttttttga acgtttttct gcgttattaa attatcctat tgttgttagc
      781 aaacaagctg caaaaaagag aatatctggg gagtttgatt tatctaatcc agaagaaatg
      841 cttgaaaaaa tgacattact tgtgggactc atatggtata aagatggaaa tgcattatac
      901 atatatgact ctggagaatt aataagcaaa gttattttgc tggagaatat atcacttaat
      961 tatcttattc agtatctgaa ggatgctaac ctttatgatc acagatatcc tataagagga
     1021 aacattagtg ataaaacatt ctatatatct ggtcctccgg cattggttga actggtagct
     1081 aatacagcaa ctttgcttga taagcaggtt tcttctattg ggacagataa agttaatttt
     1141 ggggttataa aattaaaaaa tacatttgtt agtgacagaa cttataatat gagaggggag
     1201 gatattgtca tcccaggggt ggctactgtt gtagaacgtt tattaaataa tggtaaggct
     1261 ctgagtaaca gacaagccaa aaatgatccg atgccaccct ttaatattac acagaaagta
     1321 tctgaggata gtaatgactt ttcatttagt tcagttacca atagttctat attagaggat
     1381 gtatcactta ttgcatatcc agaaaccaat tctatattag tcaaaggtaa tgatcagcaa
     1441 atacagatta ttcgcgatat tatcactcag ttagatgtag ccaaacgaca tatagaatta
     1501 tcattatgga taatcgatat tgataaatct gaattaaata accttggcgt taattggcaa
     1561 ggaacggctt catttggtga ttcgtttggt gcatcattta atatgagctc atcagcatcg
     1621 ataagcactt tggacggcaa taagtttatt gcttcagtta tggcattaaa tcagaaaaag
     1681 aaagcaaatg tagtttcaag gccggtgatt ttgacacaag agaatattcc ggctatattt
     1741 gataataaca ggacttttta tgtgtcatta gttggtgagc gcaattcttc gttggagcat
     1801 gttacgtatg gaacattgat aaatgttata cctcgctttt catctcaggg acaaattgag
     1861 atgtctttaa cgatagagga tggaacagga aatagtcagt caaattacaa ttataataat
     1921 gaaaatacat ctgtccttcc agaagttgga aggaccaaaa tcagtacaat agcgagagtt
     1981 ccacaaggca aaagtttgtt gataggtggt tatacgcatg aaacgaactc taacgaaata
     2041 gtatctattc cttttctctc ctctattcct gtaatcggta atgtgttcaa gtataaaaca
     2101 aggaatatca gtaatattgt aagggttttt ctgattcaac cccgtgagat aaaggagtca
     2161 agttattata atactgcaga atataagagc ctcatatctg aaagagaaat acaaaagact
     2221 acacaaataa tcccatctga aactactttg ctggaagacg aaaaatcatt ggtttcatac
     2281 ttaaattact aactataaag taggtgatgt atgcttgatg ttaaaaatac aggagttttt
     2341 agctctgcat tcattgataa gttgaatgca atgacaaatt cagatgatgg agatgagact
     2401 gctgatgcag agcttgattc tggcttggct aatagcaagt atattgactc atctgatgag
     2461 atggcttccg ctctttcgtc atttataaac agaagagacc ttgagaaact gaaaggaaca
     2521 aatagtgata gtcaggaacg tattttagat ggggaagaag atgaaattaa tcacaagatt
     2581 tttgatttaa agagaacttt aaaagataac cttcctctag atcaggattt tatagacaga
     2641 ctaaagagat attttaaaga tccaagtgat caagtcttag cattaaggga acttttgaat
     2701 gaaaaagatc ttactgctga acaagtcgaa tcattaacta aaattattaa tgagataata
     2761 tcaggtagtg aaaaaagtgt taatgctgga ataaattcag ctatacaggc taaattattt
     2821 ggcaacaaaa tgaaacttga accacagctt ttgcgtgcat gttatcgtgg ttttatcatg
     2881 gggaacatat caacaacaga tcagtatata gaatggcttg gtaattttgg ttttaatcac
     2941 agacatacaa ttgtgaattt tgtagagcag tcactgattg tagacatgga ttctgagaaa
     3001 ccgagctgta atgcttatga gtttggtttt gtgttatcta aattaattgc aattaagatg
     3061 attagaactt cagatgtaat ttttatgaag aaactggaat cctcaagctt gctaaaagat
     3121 ggcagtttaa gtgcagagca gctattgcta actttattat atatttttca atatccaagt
     3181 gaaagtgagc aaattcttac ttctgttata gacgtatcac gagccagtca tgaggattct
     3241 gtagtgtatc aaacatatct atcttctgtt aatgaaagtc ctcatgatat atttaaaagt
     3301 gaaagtgaaa gagaaattgc gatcaatatt ctacgagagc ttgtcacaag tgcatacaag
     3361 aaagagcttt ctagataaca ggagatgaaa gtgatccagt cttttcttaa gcaagtaagt
     3421 actaagcctg aattaattat attagtgctt atggttatga tcattgctat gttgatcata
     3481 ccattaccta cataccttgt tgatttttta atagggctta atattgtact tgctattctc
     3541 gtttttatgg gatcatttta tattgaaaga atattgagtt tttctacatt cccttcggtt
     3601 ttgttgataa cgacattatt tcgtctcgct ttatcaataa gtactagtcg actaatttta
     3661 gttgatgcgg atgcgggtaa aattattact acatttggcc agtttgtcat tggtgatagt
     3721 ctggctgtag gttttgttat tttttcaata gtaactgttg tgcagttcat tgttataaca
     3781 aaaggatctg aaagggttgc ggaggtagct gctcgctttt ctcttgacgg tatgccgggg
     3841 aaacaaatga gcattgatgc ggatttaaag gctggaatta ttgatgccgc aggagctaaa
     3901 gaaagacgca gtattctgga acgtgagagt caattgtatg gttcatttga tggagcaatg
     3961 aagttcatta aaggtgatgc aattgctggc atcattatta tttttgtcaa tttaatagga
     4021 ggtatttctg ttggtatgag tcaacatgga atgtctctat ctggtgcatt atctacttat
     4081 accatactaa ctattggtga cggattggtc tctcagattc ctgctctgtt aatttctata
     4141 agtgcaggat ttatcgttac aagagttaat ggtgatagcg ataatatggg acgtaacata
     4201 atgtcccaga tatttgggaa tccttttgtt ctcattgtta catcagctct tgccttggcg
     4261 atagggatgt tgccaggttt tccgtttttt gtttttttcc tgatagcagt tactttgacg
     4321 gctttattct attataaaaa ggtcgtagaa aaagaaaaaa gtctgtctga gtctgattct
     4381 agtggctata ctggtacatt tgatattgat aatagccatg actcatcttt ggcaatgata
     4441 gaaaatctgg atgctattag ttcagaaacc gttcctttaa ttttattatt tgccgaaaat
     4501 aagataagtg caaatgatat ggaaggtctt attgaaagga taagaagtca gttctttatt
     4561 gattatggtg tcaggcttcc aactatttta tatagaacaa gcaatgagct taaggtcgat
     4621 gatattgttt tgttaataaa tgaggtgcgt gccgatagtt ttaatatata ctttgacaaa
     4681 gtgtgtatta cagatgaaaa tggagatata gatgctctag gtattcctgt tgtttcaact
     4741 tcatataatg aacgtgttat ttcttgggta gacgtttcat atacagaaaa tctaactaat
     4801 attgatgcta aaattaaaag tgctcaagat gaattttatc accagttgtc acaagcttta
     4861 ttaaacaaca taaatgagat ttttggtata caagaaacaa aaaatatgtt agatcagttt
     4921 gaaaatcggt atcctgatct attaaaggaa gtcttccgac atgtgactat acagagaatt
     4981 tctgaggtat tacaaagatt gcttggagaa aatatttctg ttcgcaattt aaaacttatt
     5041 atggagtctt tggcgctttg ggctcccaga gaaaaagatg tcataacatt agttgaacat
     5101 gtccgtgcat cactttctag gtatatttgt agtaaaatag ctgtttctgg tgagattaaa
     5161 gttgtgatgc tttccggata tattgaggat gcaataagaa aagggataag gcaaacctct
     5221 ggtggctctt tcttgaatat ggatatagag gtttcggatg aggtaatgga aactttagca
     5281 catgctttga gagaattgag aaatgcaaaa aaaaatttcg ttcttttggt atcagtagat
     5341 atacgtaggt ttgttaaaag acttatagat aacagattta agagtatact cgttatatcg
     5401 tatgctgaga ttgatgaagc atataccatt aatgtattaa agactattta gtgaggttta
     5461 aatatgagta acattaattt agttcaatta gttagagata gtcttttcac gattggttgt
     5521 cctccatcaa ttattacaga tttagacagc cattcagcga ttaccatttc tttggatagt
     5581 atgcctgcta ttaatatagc tcttgtcaat gagcaggtta tgttatgggc taatttcgat
     5641 gcaccaagtg atgtaaaact tcagtcatct gcttataaca tattaaattt aatgttaatg
     5701 aactttagtt atagcattaa tgagctggta gagcttcatc gttctgatga gtacttacag
     5761 ttaagagttg ttattaaaga tgactacgtt cacgatggga ttgtttttgc agagattctg
     5821 catgagtttt atcagaggat ggaaatctta aatgaggtct tataatcaat gagctatata
     5881 aaattgctca ctcaattatc ttttcctaat agaatctcgg ggccaatctt ggaaacaagt
     5941 cttagcgatg tttcgattgg tgagatttgt aacattcagg ctggaattga aagtaatgaa
     6001 attattgcaa gagctcaggt tgtaggattt catgatgaaa aaacaatatt aagcttgatt
     6061 ggaaattctc gtggactttc acggcaaacg ttgattaagc ccactgccca gtttcttcat
     6121 acgcaagtcg gccgtggatt attgggagca gtagtcaatc ctttagggga ggttactgat
     6181 aagtttgctg ttacggataa cagtgaaatt ctttatcgac ctgtagataa tgctcctccg
     6241 ctatatagtg aaagggctgc aattgagaag ccttttttaa caggtgttaa ggttattgat
     6301 tctttactca cgtgtggtga aggacagcga atggggattt ttgcgtcagc tggttgtggc
     6361 aaaacttttc tcatgaatat gctcattgaa catagtggtg ctgatatata tgttattggg
     6421 ttaattggtg agcgaggtcg agaggttaca gaaacggttg attatttgaa aaactctgag
     6481 aaaaaaagca ggtgtgtttt agtatatgca acttcggatt actcttcggt tgatcgttgt
     6541 aatgctgcat atatagccac tgctatagcc gaatttttta ggactgaagg acataaagta
     6601 gcgcttttta ttgattcatt aacaaggtat gccagagcat tacgtgatgt ggccttagcc
     6661 gctggagaat cacctgccag aagaggctat ccggtttcgg tttttgatag cttacccaga
     6721 cttcttgaaa ggccaggaaa gttaaaggca ggtggctcta ttactgcatt ttacactgtt
     6781 cttttggagg atgatgattt tgctgatcca ttagctgaag aggtaagatc cattttagat
     6841 ggacatatat atttgagcag aaatctagcc caaaaaggac aatttcctgc aattgattcc
     6901 ttaaaaagta taagcagggt atttacacag gttgttgatg aaaaacatcg tattatggcc
     6961 actgcatttc gggagctact ttctgaaata gaagagctaa ggacaattat tgactttggt
     7021 gaatacaaac cgggggagaa tgcctctcag gataaaatct acaacaaaat atctgttgtt
     7081 gagagttttc tgaagcaaga ttatcgactc ggttttactt atgagcagac aatggagctt
     7141 cttggtgaaa caattagata aggttttaaa aatcaaagat aaatatcaac ggtctgttaa
     7201 attaattgaa gcacacatat taacactaaa aaaaaaactc tttgtatcga gatgtggagg
     7261 cattagataa aaggattata tacttcctgc aactggagaa tgacttggaa cctgtaggcg
     7321 ctcagagtgt tagtcagctt ttcaatacaa gacgtaagat cgctatagta aaaaagcata
     7381 ttatccaata tcagtctgaa cgaattcttc taaagggaag aattgaagaa attcaaaaag
     7441 atattgatga ggcaaatgct tctaaaagaa aactgcttca taaagagagt aaaatatgta
     7501 aacggattgg cttgattaaa agaaataact ttgccaaaca gttgatactt gatgagttat
     7561 cacaagagga tatgaagtat ggcattagat aatataaacc taaattttag tagtgacaaa
     7621 cagatagaaa aatgtgagaa actatcttca atagataata ttgatagtct cgttttgaag
     7681 aagaagagga aggttgaaat tcctgagtac tctttaattg catctaacta ttttactatt
     7741 gataagcact ttgaacataa gcatgataaa ggagaaattt atagtggcat taaaaatgcg
     7801 ttcgaactta gaaacgaacg agcgacatat tctgatattc cagaatcaat ggccattaaa
     7861 gaaaatattt tgataccaga tcaagatatc aaagcaaggg aaaaaataaa tatcggcgat
     7921 atgaggggga tcttttcata taataagagt ggaaatgcag acaagaactt cgaaagaagt
     7981 catacttctt ctgtaaaccc tgataatctg ctagaatctg ataatagaaa tggtcaaatt
     8041 ggtttaaaaa atcatagctt gtctattgat aagaatattg ctgacatcat ttctttacta
     8101 aatggaagtg ttgctaaatc atttgagctg cctgtaatga ataaaaatac tgcagacata
     8161 accccatcca tgtcattgca agaaaaatca atagttgaaa atgataaaaa tgtttttcaa
     8221 aaaaatagtg aaatgactta ccactttaaa cagtgggggg ctggacattc tgttagtatt
     8281 tcagtggagt ctggttcttt tgttctaaaa ccgtcagatc aatttgtagg aaataaactt
     8341 gacttaattt tgaaacaaga tgctgagggt aattacagat ttgatagcag tcaacataat
     8401 aaggggaata aaaataatag tacaggatat aatgaacaga gtgaagaaga atgctaagaa
     8461 ttaaacattt tgacgctaac gaaaaactac agattttata tgcaaagcaa ctctgcgagc
     8521 gtttttcgat tcagacattc aaaaataaat ttacaggcag tgaaagttta gtcactctta
     8581 cttccgtgtg tggggattgg gtaattcgta ttgatacatt atcttttttg aaaaaaaaat
     8641 acgaggtatt ttcaggattt tctacacaag aatctttact gcatttatca aaatgtgtct
     8701 ttatagagtc gtcatctgta ttttcgattc cagaactgtc tgataagatt actttccgga
     8761 tcacgaatga aatccagtat gcaactactg ggagtcattt atgctgtttt tcctcttctt
     8821 taggtattat ttattttgac aagatgccgg tattacgtaa tcaagtttct cttgacttat
     8881 tgcatcatct tttagagttt tgcttaggtt catctaatgt aaggctggct actttaaaaa
     8941 gaattcgtac tggtgatata atcatagttc agaaacttta taatttatta ttgtgtaatc
     9001 aagttattat tggggattat attgtgaatg ataataatga ggcaaaaatt aatctgtcag
     9061 aaagtaatgg tgagtcagat cacacagaag tttctttggc attattcaat tatgatgata
     9121 tcaatgtaaa agtggacttt atccttttag aaaaaaagat gacaatcaat gaactaaaaa
     9181 tgtatgtaga aaacgaatta ttcaagtttc ccgatgacat agttaaacat gtaaatatta
     9241 aagtaaatgg ttctttggtt gggcatgggg aacttgtttc tattgaggat ggttatggta
     9301 tcgagattag ttcttggatg gtaaaggagt aatctcatgc tgagtgatat gtccctcatc
     9361 gctacacttt ctttttttac gctattacca tttttagttg ctgctggtac ttgttatata
     9421 aagttttcta ttgtttttgt aatggtacga aatgcacttg gtttgcagca ggttccatca
     9481 aatatgactc tcaatggtat tgcattgatt atggctttgt tcgtgatgaa acccattatt
     9541 gaagctggtt atgaaaatta tctaaatggc ccgcaaaaat ttgatacaat atcagatatt
     9601 gtccgttttt ctgattctgg cttgattgaa tacaagcaat acttgaaaaa gcatacagat
     9661 cttgagttgg cacgtttttt ccaaaggtct gaagaagaaa atgctgattt aaagagtgca
     9721 gagaataatg attattcatt gttttccctc ttgcctgcat atgcgctaag tgaaattaaa
     9781 gatgcgttca aaataggttt ttatttatat ttgccattta ttgttgttga tcttgttatt
     9841 tcaagcattt tacttgcact tggtatgatg atgatgagtc caatcacaat atcagtacca
     9901 ataaaacttg tattatttgt tgcgcttgat gggtggggga tcctgtctaa ggccttgatt
     9961 gaacaatata tcaatgttcc tgcttagatg atggaggtaa tgtgtctgat atagtttata
    10021 tgggtaataa ggctctttat ttaatcctta tcttttcctt atggccagta ggtatagcta
    10081 cggttattgg attaactatt ggtttattac agacagtgac tcaacttcaa gagcagacac
    10141 ttccttttgg tataaagctt ataggtgtct caatatcttt gctacttctt tctggatggt
    10201 atggtgaggt tttattgtct ttttgtcatg aaataatgtt tttaattaag agtggggttt
    10261 gatggacatt tcaagctggt tcgaaagtat tcatgtgttt ttaatactcc tgaacggcgt
    10321 tttttttaga ttggctccat tatttttctt tcttccattt ttaaataacg gtataatttc
    10381 tccatctatt agaatacctg tgatttttct tgttgcatca ggattaatta cttctggtaa
    10441 ggtagacata ggttcttctg tttttgaaca tgtttatttc cttatgttca aggaaataat
    10501 tgttggcctc cttctctctt tttgcttgtc tcttcccttt tggatatttc atgctgttgg
    10561 tagtattatt gacaaccagc gtggggcaac gcttagtagt tcaattgatc ctgccaatgg
    10621 tgttgatacg tctgaattgg caaaattttt caatcttttt tctgcagttg tatttctata
    10681 cagtggtgga atggtcttta ttttagaatc catacaattg tcttataata tatgcccgtt
    10741 attttctcaa tgttctttcc gtgtctcaaa tatcttaaca tttctgactt tattggcaag
    10801 tcaggctgtt attttagcca gtcctgttat gatagtattg ttactatcag aagtattact
    10861 tggtgtatta tcgagatttg ctccgcagat gaatgctttt tccgtatcat taactattaa
    10921 aagtttactt gcaatattta ttattttcat ctgttcttct actatttact tttctaaagt
    10981 tcaatttttc ctcggtgaac ataaattttt cacaaatcta tttgttagat aaaatattat
    11041 ggcaaataaa acagaaaagc cgacacctaa aaaactaaag gatgccgcaa aaaaaggaca
    11101 gtcatttaaa tttaaggatt taacgacagt tgttattatt ctggtaggga catttactat
    11161 aatatcattc ttttccttaa gtgatgtaat gctcttatac agatatgtaa taattaatga
    11221 cttcgaaatt aatgagggta aatacttttt tgcagtggtt attgtctttt ttaagataat
    11281 tggcttccca ctttttttct gtgttctttc ggctgtgttg ccaacattgg ttcaaacaaa
    11341 gtttgttctt gcgactaaag ctatcaagat tgatttttca gtattaaacc ctgttaaagg
    11401 gttaaaaaaa atatttagta taaagacaat aaaagaattt ttcaaaagca ttctgcttct
    11461 tattattcta gcattaacaa cctatttctt ttggattaat gaccgaaaaa taattttttc
    11521 tcaggtgttt tctagtgttg atggcttata tcttatttgg ggggggctat ttaaggatat
    11581 aatattattt ttcttagcat tttctatttt tgttattatt cttgactttg tgattgagtt
    11641 cattttatac atgaaagata tgatgatgga taaacaggag ataaaaagag aatatataga
    11701 gcaagaggga cactttgaga caaagtcgag aaggcgtgag ttgcatatcg agattctttc
    11761 agagcagact aaatctgata tacgtaattc aaaattagtg gtaatgaacc cgactcatat
    11821 tgcaattggt atttatttta atccagaaat agcgcctgca ccttttattt ctctcattga
    11881 aactaaccag tgtgccttgg ctgtcagaaa atatgcaaat gaagttggta taccaactgt
    11941 gcgtgatgtg aaattagcta gaaaactata taaaacacat acaaaatata gttttgttga
    12001 ttttgaacac ttggatgaag tcctacgtct tattgtttgg cttgagcagg ttgaaaacac
    12061 tcattaataa gtaaaggaga tgtgttatat gggagttaat ttctgtaata aaataggtat
    12121 tgatcagtct gaatttgaaa tagaatcttc catcattaac tccattgcta atgaggtatt
    12181 gaacccaata tctttcctta gcaacaagga tataataaat gttttactca gaaagatttc
    12241 atctgaatgt gacctggtta gaaaagacat ttatcgttgt gctcttgagt tggtcgttga
    12301 aaaaacacct gatgatttat aatcattcat aataactctt ttgttgatat aaatattttt
    12361 gttgaagata tttatgtagt cacaggatca attgtagaaa attgttatgt ttttgttagg
    12421 aactgaacta aataatatat gataagacag caaaaacgac tgaccataat ccttctttta
    12481 ttaggagttg ataagagaga ctattcatcc tgtaatgtta aaactctgtt atatagtatt
    12541 cgcgattatg caaagtctgt aaatgatcat gagatactaa ccgagagtaa tcgtttatta
    12601 tctcattgca tttcagatag taacggagct ttctttaaaa gtagtaaata cgttcccctt
    12661 aagtacttac gtaaaaggag aatagcacga aagataccaa atgattagca ctttgctagt
    12721 aagcttgctg gtaaactata ttgaccgttg ggtttgtttt gagactgtaa tttaaattgt
    12781 gtaattgcct gtttttgata tgtttactcc aacaacggag acaggtaaat tatggacgaa
    12841 aagaagctta aagcccttgc ggctgaactg gctaaaggcc tcaaaactga ggccgacctc
    12901 aatcagtttt cccgtatgct gacgaaatat cccggctctt aaaacgatag tggctcaggc
    12961 tttcattttt cagcgttccc cagaag
//
LOCUS       DAJVUP010000119        12941 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.119, whole genome shotgun sequence.
ACCESSION   DAJVUP010000119 DAJVUP010000000
VERSION     DAJVUP010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12941
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.119"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(233..1573)
                     /gene="fadL"
                     /locus_tag="OQQ75_003025"
     CDS             complement(233..1573)
                     /gene="fadL"
                     /locus_tag="OQQ75_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708225.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid transporter FadL"
                     /protein_id="HCS1977270.1"
                     /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG
                     EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA
                     WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR
                     LNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTPQGQALAATANGIDS
                     NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG
                     LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST
                     SGNTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF
                     WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF"
     gene            1945..2229
                     /locus_tag="OQQ75_003026"
     CDS             1945..2229
                     /locus_tag="OQQ75_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HCS1977271.1"
                     /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTL
                     AALTEKARSVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR"
     gene            2409..3719
                     /gene="fadI"
                     /locus_tag="OQQ75_003027"
     CDS             2409..3719
                     /gene="fadI"
                     /locus_tag="OQQ75_003027"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HCS1977272.1"
                     /translation="MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV
                     VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS
                     FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLF
                     SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS
                     DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT
                     DGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTM
                     SDLTLIDMHEAFAAQTLANIQLLGSERFACEVLGRAHATGEVDDSKFNVLGGSIAYGH
                     PFAATGAWMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE"
     gene            3719..5863
                     /gene="fadJ"
                     /locus_tag="OQQ75_003028"
     CDS             3719..5863
                     /gene="fadJ"
                     /locus_tag="OQQ75_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadJ"
                     /protein_id="HCS1977273.1"
                     /translation="MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIK
                     QLRENKELRGVVFISAKPDNFIAGADINMIGNCKTVQEAEALARQGQQLMAEIHALPI
                     PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG
                     VSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKDRPSSRPLPVRERI
                     LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL
                     AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGLP
                     VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI
                     IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSP
                     VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR
                     MLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV
                     SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQGRLSAPQVSERCVM
                     LMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA
                     TQYGSRFTPCERLVEMGARGESFWKTTATDLQ"
     gene            6066..6551
                     /gene="sixA"
                     /locus_tag="OQQ75_003029"
     CDS             6066..6551
                     /gene="sixA"
                     /locus_tag="OQQ75_003029"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HCS1977274.1"
                     /translation="MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVE
                     IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS
                     VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA
                     I"
     gene            7226..7486
                     /locus_tag="OQQ75_003030"
     CDS             7226..7486
                     /locus_tag="OQQ75_003030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1977275.1"
                     /translation="MSKFVKTAIAAAMVMGVFTSTATIAAGNNGTARFYGTIEDSVCS
                     IVPDDHKLEVDMGDIGAEKLKNNGTTTPKSFQIRLQDCVFDT"
     gene            7493..7789
                     /locus_tag="OQQ75_003031"
     CDS             7493..7789
                     /locus_tag="OQQ75_003031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1977276.1"
                     /translation="MTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSY
                     KSGMGIDQKIVKDTSTNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQITYL"
     gene            7871..10513
                     /gene="yfcU"
                     /locus_tag="OQQ75_003032"
     CDS             7871..10513
                     /gene="yfcU"
                     /locus_tag="OQQ75_003032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher protein YfcU"
                     /protein_id="HCS1977277.1"
                     /translation="MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKG
                     DTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDASKSYACLTPELV
                     AQFGLKEDVAKNLQWSHDAKCLKSGQLEGMEIKADLSQSALVISLPQAYLEYTYPDWD
                     PPSRWDDGISGIVADYSINAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNY
                     QHTRSNDDDEFSGDETQKKWEWSRYYAWRALPSLKAKLALGEDYLRSDIFDGFNYVGG
                     SVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSV
                     SGTLHIRIEEQNGQVQEYDISTASMPYLTRPGQIRYKIMMGRPQEWGHHVEGEFFSGA
                     EASWGIANGWSLYGGALGDENYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGK
                     GSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYLDASDSGMVRTGNDKEM
                     YTATYNQNFRDAGVSVYLNYTRHTYWDREEQINYNIMLSHYFNMGSIRNVSISMTGYR
                     YEYDNQADKGMYISLSMPWGDNSTVSYNGNYGSGTDSSQVGYFSRVDDATHYQLNVGT
                     SDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMG
                     GTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVNNYYRNQAYIDLNRLPENAEAT
                     QSVVQATLTEGAIGYRKFAVISGQKAMAVLRLSDGSHPPFGAEVKNDNEQTVGLVDDD
                     GNVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLLLPCQHKGNVAPITSPAV
                     KPAIQEQTQRVTPTEPPTSISVNQ"
     gene            10533..11285
                     /locus_tag="OQQ75_003033"
     CDS             10533..11285
                     /locus_tag="OQQ75_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS1977278.1"
                     /translation="MFNLTNTAKIVVPALALLATAVSFSSHTSVTPDRTRLVFNESDK
                     SISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDI
                     NKLPADRESVFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
                     TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPV
                     LTYINDYGARMPLYFKCTGNSCQVDEEQSRKG"
     gene            11301..11810
                     /locus_tag="OQQ75_003034"
     CDS             11301..11810
                     /locus_tag="OQQ75_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001733155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1977279.1"
                     /translation="MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPP
                     PCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETV
                     LSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
                     TMTMVVDYQ"
     gene            11807..12295
                     /locus_tag="OQQ75_003035"
     CDS             11807..12295
                     /locus_tag="OQQ75_003035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1977280.1"
                     /translation="MKKFLLLLLCAGCGAVLAAEDDITFDGTLMSPPACSISGGQTIE
                     VQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVP
                     GFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD
                     YQ"
     gene            12292..12831
                     /locus_tag="OQQ75_003036"
                     /pseudo
     CDS             12292..12831
                     /locus_tag="OQQ75_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416836.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
BASE COUNT         3260 a         3081 c         3435 g         3165 t
ORIGIN      
        1 tatcctggaa atgcagaaaa gtaaactctt tgagaaggac gagcagaacg cctgaaaata
       61 tgcctttccc ttcaggtttg tctgtggata ccgcttattg atttgaaagg gcaagctgcc
      121 aacaggctgt ttgcaaaact caggaggtaa gcaatgagga cactactttc ggtgaagtgg
      181 gggagttaaa gtcacctgct atgcaggtga ctttatccag gcgaacgcgt tatcagaacg
      241 cgtagttaaa gttagtaccg aacagccagg ctttaccttc agactcgaac tggtatgggc
      301 cttcgttaat tttcacgctc tgaccgtgca tataagaaac accaacgtcg actgaagcat
      361 ctttattaaa tgcgtaagtc gtacctgcac tcagccagaa acggtcctgg tccggaatgg
      421 agatagaacg attctgagcc ggaactgggc tgtcatcaaa ggcgataccg gtacggaagg
      481 tccagttatc atcgtagtaa taagtggtac ccaacgcgat gcggtaagca tctttaaagc
      541 cttcatgttt ctggaacagc gtgttgccac tggttgaggt cgctttcagc tgctggaact
      601 gactccagct ggtgtaagcc aggctatagt gaatcgccca ctgtggatca acacggttat
      661 aacctgacac ttcccacatt tcaggcaggt tcagcgtcag ataacccgat tgcgttgcgc
      721 cacctgtcgc ggtaggaatt ggcaaaccgt agttattaaa cgcacgatta agatcgctgc
      781 tgtagttacc tttgaagtca attttcactt cagaacggta ggtcagtgca tagcggttat
      841 ttttatccag ttcatacagg attccggcgt tccagccaaa gccccactgg ttaccgttca
      901 gatgagcgat tttggtatta ctgtcgatac cgttggcggt agctgccaat gcttgccctt
      961 gaggagtttg cccggcagga gattgcataa tctgaccagc aaccaactgc cccagatcgc
     1021 ctgcgaaacg ttcaattttc gcgcgagcgt agacggcgtt gaaaccaaga ccaaagctcc
     1081 atgcattatt taagcgatac gcaccgctta agttcaggtt catggtttca aggtcagttg
     1141 tacccccgac agagccgcct gcataagtat cattaaactc tgttgccaga ccatagttag
     1201 aggtaataga agcgccccaa ccaaattggt cgttaatcgg tgcaacaaag tgcatgttcg
     1261 gaacccatgc cgtaggcgcg atgttatcgg ctttcaggct acgaccagac ggagacgttc
     1321 cgctgatatt cacatccggg tcaatataaa ccgcacccgc agaaaatgtc gggcggtcaa
     1381 acatggtaat caatgcgggg ttacggctaa cgttacctgc atcatcggca attgcgcctt
     1441 cccctgaata agcccggccc aggccagagg aagaaaattc gtttaactga aagcctgccg
     1501 accaggcctg ggtggagata agtgccactg cgactgcgag agcagacttt gtaaacaggg
     1561 ttttctggct catgaccata acctcaatga tttattttta tacaaactat gttacgtgct
     1621 gtaacaggag cgcgaagtgt agggtctgag gtacatctta gaaatcagac cagtggcgag
     1681 agtataggtc ggaccagctg gaatgttgca agtatgtttc catctttttt caaatatgat
     1741 ctaagaaacg cgatccagct ggcaaaattt ggaggttgcg cactcgcgga ttcgggtgaa
     1801 ttttgtttta gatcattttt aagtgtgatt tcggtcactt atccgatttt gcagaattaa
     1861 caactggagc agcactttcc ggaagcgtaa aatatccaca acgtttatct ggcaccttgg
     1921 gtgcacatac agaggaaatc aacgatgagt aaatgtagtg ctgatgaaac cccggtttgc
     1981 tgctgtatgg atgttggcac cattatggac aactccgact gcaccgcgtc ttacagccgc
     2041 gtgtttgcaa accgcgcaga agcagaacaa acgctggcgg cgttgactga aaaagcccgt
     2101 agcgtggaat ccgaaccgtg caaaatctcc ccgactttca ctgaagagtc tgacggtgtg
     2161 cgcctggata tcgatttcac ttttgcctgc gaagctgaaa tgctgatctt ccagctgggt
     2221 ctgcgttaat tcctctcggg tacgttcgcc cctgtcagtt gctggcaggg gcgttttctt
     2281 ttctttctcc tgtcttcact gtgtcatagc tcccactttc ctttttctcc gcttggctaa
     2341 atgtaaaaaa atggttaaga ctataatcag gtcagaccac tttatttatt tttttacagg
     2401 ggagtgttat gggtcaggtt ttaccgctgg ttacccgcca gggcgatcgt atcgccattg
     2461 ttagcggttt acgtacgcct tttgcccgcc aggcgacggc ttttcatggc attcccgcgg
     2521 ttgatttagg gaagatggtg gtaggcgaac tgctggcacg cagcgagatc cccgctgaag
     2581 tgattgaaca gctggtcttt ggtcaggtcg tacaaatgcc tgaagccccc aacattgcgc
     2641 gtgaaattgt tctcggtacc ggaatgaatg tgcataccga tgcttacagc gtcagccgcg
     2701 cttgcgctac cagtttccag gcggttgcaa acgtcgcaga aagcctgatg gcgggaacta
     2761 tccgagcggg gattgccggt ggggcagatt cctcttccgt attgccaatt ggcgtcagta
     2821 aaaaactggc gcgcgtgctg gttgatgtca acaaagctcg aaccatgagc cagcgcctga
     2881 aactcttctc tcgcctgcgt ttgcgcgatt taatgcccgt accgcctgca gtagcagaat
     2941 attctaccgg cttgcggatg ggtgacaccg cagagcaaat ggcgaaaacc tacggcatca
     3001 cccgagaaca gcaagatgca ttagcgcacc gttcgcatca gcgtgccgct caggcatggt
     3061 cagacggaaa actcaaagaa gaggtgatga ctgcctttat ccctccttat aaacaaccgc
     3121 ttgtcgaaga caacaatatt cgcggtaatt cctcgcttgc cgattacgca aagctgcgcc
     3181 cggcgtttga tcgcaaacac ggaacggtaa cggcggcaaa cagtacgccg ctgaccgatg
     3241 gcgcggcagc ggtgatcctg atgactgaat cccgggcgaa agaattaggg ctggtgccgc
     3301 tggggtatct gcgcagctac gcatttactg cgattgatgt ctggcaggac atgttgttcg
     3361 gtccggcctg gtcaacaccg ctggcgctgg aacgtgccgg tttgacaatg agcgatctga
     3421 cattgatcga tatgcacgaa gcctttgcag ctcagacact ggcgaatatt cagttgctgg
     3481 gtagtgaacg ttttgcttgt gaagtactgg ggcgtgcaca tgccactggc gaagtggacg
     3541 atagcaaatt taacgtgctt ggcggttcga ttgcttacgg gcatcccttc gcggcgaccg
     3601 gcgcgtggat gattacccag acattgcatg aacttcgccg tcgcggcggt ggatttggtt
     3661 tagttaccgc ctgtgctgcc ggtgggcttg gcgcggcaat ggttctggag gcggaataat
     3721 ggaaatggca tcagcgttta ctcttaatgt tcgtctggac aacattgcta tcatcaccat
     3781 cgacgtaccg gatgagaaaa tgaataccct gaaggcggaa tttgcctcgc aggtgcgcgc
     3841 cattattaag caactccgtg aaaacaaaga gttgcgcggc gtggtgttta tctccgcgaa
     3901 accggacaat tttatcgccg gagcagacat caacatgatc ggcaactgca aaacggtgca
     3961 agaagcggaa gctctggcgc ggcagggcca acagttgatg gcggagattc atgctttgcc
     4021 cattccggtt atcgcggcta ttcatggcgc ttgcctgggt ggtgggctgg agttggcgct
     4081 ggcgtgccac ggtcgcgttt gtactgacga tcctaaaacg gtgctcggtt tgcctgaagt
     4141 acaacttgga ttgttacccg gttcaggcgg cacccagcgt ttaccgcgtc tgataggcgt
     4201 cagcacaaca ttagagatga tcctcaccgg aaaacaactt cgggcgaaac aggcattaaa
     4261 gctggggctg gtggatgacg ttgttccgca ctccattttg ctggaagtcg ctgttgagct
     4321 ggcgaagaag gatcgcccat cttcccgccc tctacctgta cgcgagcgta ttctggcggg
     4381 gccgttaggt cgtgcgctgc tgttcaaaat ggtcggcaag aaaacagaac acaaaactca
     4441 aggcaattat ccggcgacag aacgcatcct ggaggttgtt gaaacgggat tagcgcaggg
     4501 caccagcagc ggttatgacg ccgaagctcg ggcgtttggc gaactggcga tgacgccaca
     4561 atcgcaggcg ctgcgtagta tcttttttgc cagtacggac gtgaagaaag atcccggtag
     4621 tgatgcaccg cctgcgccat taaacagcgt gggaatttta ggtggtggct tgatgggcgg
     4681 cggtattgct tatgtcactg cttgtaaagc ggggcttccg gtcagaatta aagatatcaa
     4741 cccgcagggc ataaatcatg cgctgaagta cagttgggat cagctggagg gcaaagttcg
     4801 ccgtcgtcat ctcaaagcca gcgaacgtga caaacagctg gcattaatct ccggaacgac
     4861 ggactatcgc ggctttgccc atcgcgatct gattattgaa gcggtgtttg aaaatctcga
     4921 attgaaacaa cagatggtgg cggaagttga gcaaaattgc gccgctcata ccatctttgc
     4981 ttcgaatacg tcatctttac cgattggtga tatcgccgct cacgccacgc gacctgagca
     5041 agttatcggc ctgcatttct tcagtccggt ggaaaaaatg ccgctggtgg agattattcc
     5101 tcatgcgggt acatcagcgc aaaccatcgc cactacggta aaactggcga aaaaacaggg
     5161 caaaacgccc attgtcgtgc gtgacaaagc cgggttttac gtcaatcgca tcttagcgcc
     5221 ttacattaat gaagctatcc gcatgctgac caaaggtgaa cgggtagagc acattgatgc
     5281 cgcgctagtg aaatttggtt ttccggtagg tccaatccaa cttttggatg aggtaggaat
     5341 cgacaccggg actaaaatta ttcctgtact ggaagccgct tatggagaac gttttagcgc
     5401 gcctgcaaat gttgtttctt caattttgaa cgacgatcgc aaaggcagaa aaaatggtcg
     5461 gggtttctat ctttatggtc agaaagggcg taaaagcaaa aaacaggtcg atcccgccat
     5521 ttacccgctc attggcgcac aagggcaggg gcgactctcc gcaccgcagg tttctgaacg
     5581 gtgtgtgatg ttgatgctga atgaagcagt acgttgtgtt gatgagcagg ttatccgtag
     5641 cgtgcgtgac ggggatattg gtgcggtatt tggcattggt tttccgccat ttctcggtgg
     5701 accgttccgc tatatcgatt ctctcggcgc gggcgaagtg gttgcaataa tgcaacgact
     5761 ggccacgcag tatggttccc gttttacccc ttgcgagcgt ttggtcgaga tgggcgcgcg
     5821 tggggaaagt ttttggaaaa caactgcaac tgacctgcaa taagaaggtc aaagctatat
     5881 gaatccgcgc tgaatggcgg agtattggtc aaaatgtaaa cgcatattga ctatacttac
     5941 gccattgagg taaaaaacag cgtttcattc ggtgaatgga taaggcacaa tgccggccac
     6001 cgttttcttt ctctggtttc agatgaaaga aaatgggcga atctggttaa caaaagcggt
     6061 gcaatatgca agtttttatc atgcgtcacg gcgacgcagc cctcgatgcc gccagtgatt
     6121 cggttcgtcc tctgaccact aatggttgtg acgaatctcg cctgatggcg aactggctga
     6181 aaggtcaaaa agtggaaatc gaacgcgttc tggtgagccc gttcctgcga gccgagcaaa
     6241 cactggaaga agtaggggat tgtctgaacc tgccttccag tgcagaagtt ctgccggagt
     6301 taacgccctg cggcgatgtt ggtctggtca gtgcctattt gcaggcgttg accaatgaag
     6361 gtgttgcttc ggtactggtg atctctcact taccgttagt cgggtatctg gttgccgagt
     6421 tatgtccggg cgaaacgccg cctatgttta ccacctcggc cattgccagc gtaacgcttg
     6481 atgaaagcgg aaacggtaca ttcaactggc agatgagccc gtgtaatctg aagatggcaa
     6541 aagctatctg atgtgttcca aattatgccc aatgaggtag attcattggg cataattgct
     6601 catcaggcag cggatatctg tcaacctcac tactatcgaa gactctcctt atctataaat
     6661 aaaacacttt ctacattcat tcggaaatta ttcttctgca cgtatcttga ttttgcccaa
     6721 agttacatgt tgaaatgaat aatgtctgtt tgacactcat tgtcatttat taatacagat
     6781 aatagagttg aataatcagg caggatgtaa ttgaaacttg attaaattct ggctatagtg
     6841 tttatatatt atattgtcaa aagtggataa atgccaatcg cattatatgt tcattgtttg
     6901 ttttttaagc tgttgatatt cattattgat atactttcta ttttttctaa atacttattc
     6961 cgtatttttt aaggatgtcc ttaagataat ctttcttctg tcaatatatt aattaaatct
     7021 acatttactc tttagtaaaa ttaaattgca tcaggggtgt ggaaacatca ctatgcggcc
     7081 ccacaccaac gaatacaatt ttctacgacc tgttcttttt ggatcgcatg ccgtattcaa
     7141 tggctgggta taaacattgg ctattgactg aatcaatgta ttgcaatgtt tatattttta
     7201 attatttata gtttaaggac aaataatgag taagtttgtt aaaacagcta ttgctgcggc
     7261 aatggtgatg ggcgtgttca cctctacggc aacaatcgct gcgggtaaca acggtactgc
     7321 acgtttttac ggcaccattg aagactcagt gtgttctatc gttccggacg atcacaaact
     7381 ggaagttgat atgggtgata tcggtgccga aaaactgaaa aataacggca ccaccacgcc
     7441 gaaaagtttc cagattcgtc tgcaagattg cgtatttgat acttaggaaa caatgaccac
     7501 tacctttact ggtaccgttt cttctgcaaa tagcggcaat tattacacca ttttcaatac
     7561 cgataccggt gcggcattta acaatgttag cctggcgatc ggtgactctc tgggtacctc
     7621 ttacaaaagc ggcatgggta ttgaccagaa aatagtgaaa gacacttcta ctaataaagg
     7681 caaagcgaag cagacactga actttaaagc ctggctggtc ggcgcagctg atgcgccaga
     7741 tctgggtaat ttcgaagcaa ataccacctt ccagattact tacctgtaag gcataccccc
     7801 atagcgacac tgctatgggg gatttaaatg gattttgacc gaacaagaat aaaaacggat
     7861 agaaacgtgt atgcctgacc attctctttt tcgattacgg attcttccgt ggtgcattgc
     7921 gctggcaatg tcagggagtt atagtagtgt ctgggctgaa gacgacattc agtttgattc
     7981 ccgttttctg gaattaaaag gcgacacaaa aattgatctg aagcgttttt ccagccaggg
     8041 atatgttgag cccggaaaat acaatttaca ggttcaacta aataaacagc cattggcgga
     8101 agagtacgat atttactggt atgctggtga agatgacgcg agcaaaagct atgcttgtct
     8161 gacaccggaa ctggtagcgc agtttggttt aaaagaagac gtggcgaaaa atctgcaatg
     8221 gagccacgat gctaaatgcc tgaaatccgg tcaactggaa ggcatggaaa ttaaggctga
     8281 tttaagccag tccgcattag tcatttcact gccacaggct tacctcgaat atacttatcc
     8341 cgactgggat ccgccttcac gttgggatga cggcatctcc gggatcgtcg cggactacag
     8401 catcaacgca caaacccggc acgaagaaaa tggcggtgat gatagtaacg agatcagcgg
     8461 caacgggacg gtcggggtta acctggggcc gtggcgtatg cgtgctgact ggcagactaa
     8521 ctatcaacat actcgcagta atgatgacga tgaattcagc ggcgatgaaa ctcaaaaaaa
     8581 atgggagtgg agtcgctact atgcctggcg ggcgttacca tcattaaaag ccaaactggc
     8641 gctgggcgag gattacctca gatccgatat ttttgatggt tttaactatg ttggtggtag
     8701 tgtcagtact gacgatcaaa tgttgcctcc caatctgcgc ggctacgcgc cagacatttc
     8761 cggcgtggca cacaccacag caaaagtgac cgtcagccag atggggcgtg tgatttacga
     8821 aacgcaggtt ccggctggac cgtttcgtat tcaggatctt ggtgattctg tctccggtac
     8881 gttgcatatt cgcattgaag aacagaacgg ccaggtgcag gaatatgaca tcagcaccgc
     8941 ctcgatgcca tacctcactc gtccaggtca gattcgctat aagatcatga tgggccgtcc
     9001 gcaagagtgg ggacaccatg tcgagggtga atttttttct ggtgctgaag cttcctgggg
     9061 gatcgctaac ggctggtcgt tatatggcgg cgcactggga gatgaaaact atcagtctgc
     9121 ggcgcttggc gtcggtcgcg atttgtctac attcggcgcg gtcgcgtttg atgttactca
     9181 ctcgcacacc aaactggata aagacaccgc ttatggcaaa ggttcgctgg acggtaactc
     9241 cttccgtgtg agttattcca aagactttga ccagctcaac agccgcgtta cttttgctgg
     9301 atatcgcttc tcggaagaga actttatgac catgagcgag tatctggatg ccagtgacag
     9361 cggaatggta cgcacgggca acgacaaaga gatgtacacc gccacttata accagaactt
     9421 ccgcgatgcg ggtgtttcgg tttatctcaa ctatacccgc catacctact gggatcgcga
     9481 ggagcagata aactacaaca tcatgctctc gcactatttc aatatgggca gtattcgtaa
     9541 tgtcagcatc tcgatgactg gctaccgtta cgagtatgac aaccaggccg acaaaggcat
     9601 gtacatttcg ctcagtatgc cgtggggcga caacagtacc gttagctata acggtaacta
     9661 tggcagtggg acggacagca gtcaggtcgg ttatttcagc cgtgtcgatg acgcgactca
     9721 ctatcagttg aacgtcggca ccagtgacaa acacaccagc gttgacggct attacagcca
     9781 tgatggttcg ctggcgcagg ttgacctcag tgcgaactac catgaagggc aatacacctc
     9841 tgcgggcttg tcgttacagg gcggcgcaac gcttactgcc cacggtggcg cacttcaccg
     9901 tacccagaat atgggcggga cacgcttgtt gattgatgcc gatggcgttg ccgatgttcc
     9961 ggtggaaggt aacggggctg ctgtttatac caatatgttt ggtaaagccg tcgtttctga
    10021 cgtcaataac tattaccgca atcaggcgta tatcgacctc aacagattgc ctgaaaacgc
    10081 tgaagcaacc cagtcggtgg tgcaagccac gctaactgaa ggtgccattg gctaccgtaa
    10141 atttgctgtc attagcggac aaaaagcgat ggcggtgctg cgcctgagcg acggcagcca
    10201 tcctccgttt ggcgcagaag taaaaaatga taacgagcag acagtgggcc ttgtcgatga
    10261 tgacggcaat gtttatctgg ctggggtgaa acctggcgaa cacatgagtg tgttctggag
    10321 tggtgttgcg cattgcgata tcaacctgcc ggacccgctg cctgccgatc tgtttaacgg
    10381 cttgttacta ccatgccagc ataaaggcaa tgtagcacct atcacttcgc cggcggtcaa
    10441 accggcgatt caggaacaga cacagcgggt gacgccaacg gaacctccga cttcaatttc
    10501 agtaaaccag taacgtgatt aaggaatgat ccatgtttaa tctgactaac actgcaaaaa
    10561 tcgttgtccc ggcactggcg ctgctggcga cagcggtcag tttctccagc cacacttcgg
    10621 tgacgcccga caggacacgg ctggtgttta acgaaagcga caagtccatc agcgtcacgc
    10681 tgcgcaacaa cgatcccaca ctgccttatc tggcgcagag ctggatagag gatgcaaagg
    10741 gcaacaaaat cagctctccg cttgcggtgc ttccgccagt gcagcgcatc gatgcgatga
    10801 tgaacggcca ggtgaaggtg caggggctgc cggatatcaa caaactgccg gccgaccgcg
    10861 agagcgtgtt ctatttcaac gtgcgcgaaa ttccgccgaa atcaaataaa ccgaacacac
    10921 tgcagattgc gctgcagacg cgtatcaaac tgttctggcg accgaaggcg ctggagaaca
    10981 ccagcatgaa aagtccgtgg cagcataagg tgacgctcat ccgtaacggc caggacttca
    11041 ccgtcaataa cccgacgccg tactacgtga tcatcagcaa cgccagcgct aaaaaaggcg
    11101 gcaacccgcc ggcgggattc acaccgctga tgatggagcc gaaaacctcc gcaccgctga
    11161 atgcgaagat ggacagcgtg ccggtgctga cttacatcaa cgactacggc gcgcggatgc
    11221 cgctgtactt caaatgcacc ggcaacagct gccaggtgga tgaagagcag agccgcaaag
    11281 gctgatgccg ggagggactt atgagtcaca agtttgtagc gggcgcaggg ttgctggtgc
    11341 tggccggatg gggcatcagc ggtttggctg ttgctggcag tgatatcaaa caggtggatc
    11401 tgacgctgcg aatcctagtc gatggaccgc cgccttgctc cgtgaaggga agcgctgtga
    11461 aatttggcaa tgtgataatc aacaggatcg atggtaccaa ttaccaacag gatgcgaaat
    11521 acaccctcaa ctgcggtaat aaagtcagcg atgacttacg gatgcagctc aaaggcaata
    11581 ccgccgtgat caacggagaa acggttctca gcacggatat cgccggcctg ggggtgcgga
    11641 tagaaaacgc cgccgacaac tccctgtttg cagttggtga aaataactgg acgcctttta
    11701 atgtcaacac tcagcctcag ctgaaagcgg tgccggtaaa acagagcggg gtgcaactga
    11761 ctccgtcgga gtttaacgcc acgatgacca tggtggtgga ttaccaatga aaaaattcct
    11821 gctcctttta ctgtgcgctg gttgcggggc tgtgctggcg gcggaagatg acatcacatt
    11881 cgacggtacg ctgatgtcgc cgcccgcctg tagcatcagc ggcgggcaaa ccatcgaagt
    11941 gcaatttcgc gatctcatta tcgacagcat tgatggcaat tatggtcgtc agaaagtgga
    12001 ctacgaactg agctgcgact cggatgtccg cgatcccgag tggaatatga cactctcctg
    12061 gacggggact gccacctcct acaacgactc tgctattgag acggatgtac cgggcttcgg
    12121 aattgagctt cagcatgacg gtcagcgttt taagctcaac gagccgcttt ccattaacgc
    12181 caccgatttt agccagaagc caaagctgga ggcggtaccg gtcaaagcgg ctgatgcggt
    12241 gctgacggac acgacctttt ctgcttacgc aaccttacgg gtggattacc aatgaaaaca
    12301 gcacacattt attcacccgg ttatgcgctg ttagcaggcc tgctgctgac cgccagcaca
    12361 ggagcacagg cagtcgacaa caacctgcat ttttacggca acctgctgag taaatcctgc
    12421 acgctggtgg tggatggtgc caacctggca gaaatccatt ttcccaccgt cagcaaccgg
    12481 gatttgatgg tatctgggca gtccgcgcat ctgccggttg tgtttaagct gaaagactgc
    12541 aaagggccgg cgggatacaa cgtcaaagtc acgctgagcg gcaccgaaga cagcggtcag
    12601 ccgggttttc tggcagtcga tgacacctcc accgcgcagg gcgtggggat agggatggaa
    12661 acgctcgacg gcaagcgggt ggatattaac aacaccaccg gggcgacctt tgcgcttacc
    12721 aacggcaaca atgatattaa tttccgggcc tggatctagg cgaaaagcgg tcgtgatgta
    12781 accatcggtg atttcaccgc cagcctgaca gcaacttttg agtatattta aaatgaaaat
    12841 ccttcgtcat gttttatgtc ttttattgct gttaatgttc aatacatgcg gccaggcggc
    12901 gacgaaagtt ggtgagttat atgtgccagc tggtgccagt t
//
LOCUS       DAJVUP010000120        12914 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.120, whole genome shotgun sequence.
ACCESSION   DAJVUP010000120 DAJVUP010000000
VERSION     DAJVUP010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.120"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..880)
                     /gene="rarD"
                     /locus_tag="OQQ75_003037"
     CDS             complement(<1..880)
                     /gene="rarD"
                     /locus_tag="OQQ75_003037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HCS1977281.1"
                     /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI
                     WSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA
                     SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS
                     FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMLLNLLLIA
                     AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI
                     WVALAIFVMDAIYTQRR"
     gene            complement(932..1399)
                     /locus_tag="OQQ75_003038"
     CDS             complement(932..1399)
                     /locus_tag="OQQ75_003038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312777.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HCS1977282.1"
                     /translation="MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAF
                     KNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTI
                     DLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG"
     gene            1564..2433
                     /gene="pldA"
                     /locus_tag="OQQ75_003039"
     CDS             1564..2433
                     /gene="pldA"
                     /locus_tag="OQQ75_003039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HCS1977283.1"
                     /translation="MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQ
                     EHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGIL
                     GPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY
                     NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLK
                     IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQ
                     TRVGVGVMLNDLF"
     gene            2566..4395
                     /gene="recQ"
                     /locus_tag="OQQ75_003040"
     CDS             2566..4395
                     /gene="recQ"
                     /locus_tag="OQQ75_003040"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026263.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HCS1977284.1"
                     /translation="MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL
                     VVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE
                     QQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
                     EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM
                     EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA
                     DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA
                     EAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG
                     RQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDY
                     GHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSL
                     QLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEM
                     AEQMPITASEMLSVNGVGMCKLERFGKPFMALIRAHVDGDDEE"
     gene            4459..5079
                     /gene="rhtC"
                     /locus_tag="OQQ75_003041"
     CDS             4459..5079
                     /gene="rhtC"
                     /locus_tag="OQQ75_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine export protein RhtC"
                     /protein_id="HCS1977285.1"
                     /translation="MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG
                     ITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAP
                     APQIELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVET
                     LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR"
     gene            complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="OQQ75_003042"
     CDS             complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="OQQ75_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HCS1977286.1"
                     /translation="MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIA
                     GLQTGLAIHIVLVGVGLGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSL
                     ASTQSRRHLFQRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDII
                     VMIGYATLAQRIALWIKGPKQMKALNKIFGSLFMLVGALLASARHA"
     gene            5872..6894
                     /gene="pldB"
                     /locus_tag="OQQ75_003043"
     CDS             5872..6894
                     /gene="pldB"
                     /locus_tag="OQQ75_003043"
                     /EC_number="3.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase L2"
                     /protein_id="HCS1977287.1"
                     /translation="MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVR
                     FVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADP
                     HLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIA
                     LTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRY
                     RRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNR
                     MHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSG
                     NRSTEV"
     gene            6902..7702
                     /gene="yigL"
                     /locus_tag="OQQ75_003044"
     CDS             6902..7702
                     /gene="yigL"
                     /locus_tag="OQQ75_003044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar/pyridoxal phosphate phosphatase YigL"
                     /protein_id="HCS1977288.1"
                     /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGR
                     HHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDII
                     TNVYRDDEWFMNRHRPEEMRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPL
                     EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMND
                     AEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS"
     gene            7778..8677
                     /gene="bioP"
                     /locus_tag="OQQ75_003045"
     CDS             7778..8677
                     /gene="bioP"
                     /locus_tag="OQQ75_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="HCS1977289.1"
                     /translation="MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFL
                     PFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIY
                     DIMNKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKR
                     LMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIG
                     YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTLITGALVILASLWVH
                     RKWVAPRSSQTADDRRRDCALSE"
     gene            complement(8565..9518)
                     /gene="metR"
                     /locus_tag="OQQ75_003046"
     CDS             complement(8565..9518)
                     /gene="metR"
                     /locus_tag="OQQ75_003046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MetR"
                     /protein_id="HCS1977290.1"
                     /translation="MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRL
                     GFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQ
                     WLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD
                     YEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSV
                     DNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP
                     VTEAFIRSARNHACDHLPFVKSAERPTYDAPTVRPGSPARL"
     gene            9754..12015
                     /gene="metE"
                     /locus_tag="OQQ75_003047"
     CDS             9754..12015
                     /gene="metE"
                     /locus_tag="OQQ75_003047"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HCS1977291.1"
                     /translation="MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELR
                     ARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRG
                     RAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLEEVDEALALGHNVKPV
                     LLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELP
                     QAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDGVAEL
                     HKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSV
                     ETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAV
                     EKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKG
                     NLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW
                     VQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE
                     DVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEA
                     FRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDY
                     PNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAAL
                     ANMVQAAQNLRRG"
     gene            complement(12300..12545)
                     /locus_tag="OQQ75_003048"
     CDS             complement(12300..12545)
                     /locus_tag="OQQ75_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HCS1977292.1"
                     /translation="MITETEINVLKVMAEKDINWNWMNLDRTLSIRQIPGFGNVVNIV
                     NKLANEGLVIIEDSGHKSMPHYHVTEKGYNFVKSENK"
     gene            complement(12535..>12914)
                     /locus_tag="OQQ75_003049"
     CDS             complement(12535..>12914)
                     /locus_tag="OQQ75_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977293.1"
                     /translation="FNPDLAGGPIENLTTDGVTINREGIAIVEKHIARFGHDPINEVM
                     INRLKDIEKGKIPPEQVDLNFYTHECREYQRYCNLGWETGQPDGDAGYALWNHTHTAT
                     LEDYKLKGELNDLYHQDALDYDN"
BASE COUNT         3051 a         3261 c         3442 g         3160 t
ORIGIN      
        1 ttctacgctg cgtataaatc gcatccatca caaaaattgc cagcgccacc caaataaagg
       61 cgaaggtcac catcttatcg gcacccggtt tttcaccata aaacgtcact gccaacagga
      121 acatcagcgt cgggccaata tactggaaga agcctaacgt ggagagacgc aggcgtgtag
      181 cagctgcggt aaaacacaac agcggtacgg tggtgacaat accggcggcg atcagcagca
      241 aattcagcaa catcgggttt tgccccatat ggctggttga gctgtcggca atagcaaaca
      301 gataaatcgc cgccacgggc agcagccaca tggtttcgat taacatgccg gtttgcgctt
      361 caacggcaat tttcttgcgt accagtccgt agaaggcaaa actaaacgcc agccccagcg
      421 cgatgattgg cagcgaacca aaagtccaca actgaaccaa cacgccacat atcgccagaa
      481 tcaccgccag ccattgcatc cggcggaatc gctcgccgag gaaaatcatc cccagcacaa
      541 tgttcaccag cgggttaata aagtaaccaa ggctcgcttc cagcatatgg tgattgttca
      601 ccgcccagat aaacagtagc cagttgccac caatcagcac ggcagagact gccagcataa
      661 aaattttctg tggcgtctga atcagcgttt ttaaatagga ccactggcgg caaatgctca
      721 tcagcaccac cataaagaaa aacgaccaga tcacgcgatg cgtcaggatc tcatcggcgg
      781 gcacgtagta aatcagcttg aagtatgctg gcgcaatacc ccaaataaaa taagcggcaa
      841 gagcgagtaa tacgccctgc cgcgtttgtt ttgcatccat cgggaatact catttttaat
      901 tggtaacagc agtttacctg cttttatgtc ttcaacctac catataggtg gcggtggcac
      961 tggcaatata aagctgttct tcattgtgta attcaacgcg ggcgacggcg actttattgc
     1021 ctgcacgcaa caggctactg gtagcagtaa aacgctcgcc cctgcctggg cgcagataat
     1081 caacgcgaag atcaatggtc cccatccgcg atagccgctg gcgtagttca tcttcactga
     1141 tggtttcgtg gcgggttaag gtacttccca cgcacaccag accggcggcg acatccagcg
     1201 ccgacgcaat gactccgccg tgcaaaatgc tttgcgccca gttacccacc atcatcggct
     1261 gatttttaaa ggccagctgt gcgaactctt tttcgtaacg ctccagctcc atccctaacg
     1321 cgcggttaaa tggcatgtga taaacaaaca tctcacccac taatttcagg gcttgttcag
     1381 cggtcagtac ggcagacata tcatccttac acttcattgg ttaatgaaat gttgatttta
     1441 tgcttctttg ttgttggttt ctactttagg aagggataac taacggcaat ggagttaagt
     1501 atgtaaaata gcccgcagaa aaacattcac cttatcaata attcgttacg gagaacacga
     1561 ccgatgcgga ctctgcaggg ctggttgttg ccggtgttta tgttgcctat ggcagtatat
     1621 gcacaagagg caacggtgaa agaggtgcat gacgcgccag cggtgcgtgg cagtattatc
     1681 gccaatatgc tgcaggagca tgacaatccg ttcacgctct atccttatga caccaactac
     1741 ctcatctaca cccaaaccag cgatctgaac aaagaagcga ttgccagtta cgactgggcg
     1801 gaaaatgcgc gtaaggatga agtaaagttt cagttgagcc tggcatttcc actgtggcgt
     1861 gggattttag gcccgaactc ggtgttgggt gcgtcttata cgcaaaaatc ctggtggcaa
     1921 ctgtccaata gcgaagagtc ttcaccgttt cgtgaaacca actacgaacc gcaattgttc
     1981 ctcggttttg ccaccgatta ccgttttgca ggttggacgc tgcgcgatgt ggagatgggg
     2041 tataaccacg actctaacgg gcgttccgac ccgacctccc gcagctggaa ccgcctttat
     2101 actcgcctga tggcagaaaa cggtaactgg ctggtagaag tgaagccgtg gtatgtggtg
     2161 ggtaatactg acgataaccc ggatatcacc aaatatatgg gttactacca gcttaaaatc
     2221 ggctatcacc tcggtgatgc ggtgttgagt gcgaaaggac agtacaactg gaataccggt
     2281 tacggcggcg cggagttagg cttaagttac ccgatcacca aacatgtgcg cctttatact
     2341 caggtttaca gcggctatgg cgaatcgctc atcgactata acttcaacca gacccgtgtc
     2401 ggtgtaggag ttatgctaaa cgacttgttt tgatgaacgg ttgagtggtt ggcaaatctg
     2461 gaacccagca tccaggatta ccctctcaga gactaaaagc attgcagttt ctcgcgcagg
     2521 cgctgaaaat agcgcctgtt tttatttcag gcaatcgggg tgaatgtggc gcaggcggaa
     2581 gtgttgaatc tggagtccgg agctaaacag gttttacaag aaacctttgg ctaccaacag
     2641 tttcgccccg gccaggaaga aattatcgac actgtgcttt ccggtcgcga ttgcctggtc
     2701 gtcatgccca ccggtggcgg aaaatccctt tgctatcaaa ttcctgcctt attgctaaac
     2761 ggccttaccg tggttgtttc accgctgatt tcgttgatga aagatcaggt ggatcaactg
     2821 caagccaacg gcgtggcggc ggcgtgcctt aactcgacgc aaacccgcga gcagcaactt
     2881 gaagtgatga caggctgccg caccgggcaa attcgtctgc tttatatcgc cccggaacgc
     2941 ctgatgctgg ataactttct tgagcatctg gcgcactgga atccggtgtt attagccgtt
     3001 gatgaagcgc actgtatctc ccaatggggc cacgatttcc gcccggaata tgccgcgctt
     3061 ggtcagttac gccagcgttt cccgaccctg ccgtttatgg cgctgactgc cacagccgac
     3121 gacaccacgc gccaggatat cgtgcgcttg ctggggctga acgatccgct gattcaaatc
     3181 agcagttttg accgtccgaa tattcgctac atgctgatgg agaagttcaa accgctcgat
     3241 cagttgatgc gctacgtgca ggaacagcgc ggtaagtcag gcattatcta ctgcaacagc
     3301 cgcgcgaaag tagaagacac cgctgcgcgc ctgcaaagca agggaattag cgcggcggcc
     3361 tatcatgctg ggctggaaaa taatgttcgc gccgacgtgc aggaaaaatt tcagcgcgat
     3421 gacctgcaaa ttgtggtggc gacggtggcg ttcggcatgg gcatcaataa accaaacgtt
     3481 cgcttcgtgg tccactttga tattccgcgc aatatcgaat cctattatca ggaaaccggt
     3541 cgcgccgggc gtgatggcct gcccgcggaa gcgatgctgt tttacgatcc ggccgatatg
     3601 gcgtggctgc gccgttgcct ggaagagaag ccgcaggggc agttacagga tatcgaacgt
     3661 cataaactca atgcgatggg cgcttttgcc gaagcgcaaa cttgccgtcg tctggtattg
     3721 ctgaactatt ttggcgaagg gcggcaagag ccgtgcggga actgcgatat ctgcctcgat
     3781 ccgccgaaac agtacgacgg ttcaaccgat gctcagattg ccctttccac cattggtcgt
     3841 gtgaatcagc ggtttgggat gggttatgtg gtggaagtga ttcgtggtgc taataaccag
     3901 cgtatccgcg actatggtca tgacaaactg aaagtctatg gcatgggccg tgataaaagc
     3961 catgaacatt gggtgagcgt gatccgccag ctgattcacc tcggcctggt gacgcaaaat
     4021 attgcccagc attctgccct acaactgaca gaggccgcgc gcccggtgct gcgcggcgaa
     4081 tcctctttgc aacttgccgt gccgcgtatc gtggcgctca aaccgaaagc gatgcagaaa
     4141 tcgttcggcg gcaactatga tcgcaaactg ttcgccaaat tacgcaaact gcgtaaatcg
     4201 attgccgatg aaagtaatgt cccgccgtac gtggtgttta acgacgcaac cttgattgag
     4261 atggctgaac agatgccgat caccgccagc gaaatgctca gcgttaacgg cgttgggatg
     4321 tgcaagctgg aacgctttgg taaaccgttt atggcgctga ttcgtgcgca tgtcgatggc
     4381 gacgacgaag agtagtcagc agcataaaaa agtgccagga tgaagactcc gtaaacgttt
     4441 cccccgcgag tcaaatgtat gttgatgtta tttctcaccg tcgccatggt gcacattgtg
     4501 gcgcttatga gccccggtcc cgatttcttt tttgtctctc agaccgctgt cagtcgttcc
     4561 cgtaaagaag cgatgatggg cgtgctgggt attacctgcg gcgttatggt ttgggcaggg
     4621 attgcgttgc ttggcctgca tttgattatc gaaaaaatgg cctggctgca tacgctgatt
     4681 atggttggcg gtggcctgta tctctgctgg atgggttacc agatgctacg cggtgcactg
     4741 aaaaaagagg ctgtatctgc gcctgcacca cagattgagc tggcgaaaag cgggcgcagt
     4801 ttcctgaaag gtttactgac caatctcgct aatccgaaag cgattatcta ctttggctcg
     4861 gtgttctcat tgtttgtcgg tgataacgtt ggcactaccg cgcgctgggg catttttgcg
     4921 ctgatcattg tcgaaacact ggcgtggttt accgtcgttg ccagcctgtt tgccctgccg
     4981 caaatgcgcc gtggttatca acgtctggcg aagtggattg atggttttgc cggggcgtta
     5041 tttgccggat ttggcattca tttgattatt tcgcggtgat gccagacgcg tcttcagagt
     5101 aagtcggata aggcgtttac gccgcatccg acattatttt tcacgcatgc ctcgccgatg
     5161 ctaacagcgc tcccaccagc ataaacaacg agccgaaaat cttattcagc gccttcatct
     5221 gctttggtcc tttaatccat agagcaatcc gttgagcaag ggtggcgtaa ccgatcatca
     5281 caataatatc gactacaata gtggtgacgc cgagcacgat atactgcatc agttgcggct
     5341 gctgtggcat gatgaattgc ggaaatagcg ccgccagaaa cacaatactt ttgggattgg
     5401 tgagattcac aaaaactgcg cgctggaaca aatgtcgacg cgattgagta gaggccagcg
     5461 atttaaggtc aattgcacca gcggcgcgcc actgctggat tcccagccaa atcaagtaag
     5521 ccgcgcctgc ccacttcaac acttcaaacg caatcactga gcgggaaaat agcgtcccca
     5581 aacccacgcc aaccagcaca atatgaatcg ccagtccggt ctgaagccca gcaatagacg
     5641 ccaccgcgcc gcgataaccg tggttgagcg aggtggtcat agtgttgatt gcaccagagc
     5701 ctggcgacag gcttaaaatg atcgatgtca gcaggtaggc aaaccaccat tctaaggtca
     5761 tgatgaactc ccggtgtgtc tatttttgtg ccacaatacg ctactgtcgc agcgttgtgt
     5821 caggcacgct aaaaaaaacg attttacgtg gtttaagagg cagattaccc gatgtttcag
     5881 cagcaaaaag actgggaaac aagagaaaac gcgtttgctg cttttaccat gggaccgctg
     5941 actgatttct ggcgtcagcg tgatgaagca gagtttactg gtgtggatga cattccggtg
     6001 cgctttgtcc gttttcgcgc acagcaccat gaccgggtgg tagtcatctg cccggggcgt
     6061 attgagagct acgtaaaata tgcggaactg gcctatgacc tgttccattt ggggtttgat
     6121 gtcttaatca tcgaccatcg cgggcaggga cgttccggtc gcctgttagc cgatccgcat
     6181 ctcgggcatg ttaatcgctt taatgattat gttgatgatc tggcggcatt ctggcagcag
     6241 gaggtccagc ccggtccgtg gcgtaaacgc tatatactgg cacattcgat gggcggtgcg
     6301 atctccacat tatttctgca acgccatcca ggtgtatgtg acgccattgc gctaactgcg
     6361 ccaatgtttg ggatcgtgat tcgtatgccg tcatttatgg cacggcagat cctcaactgg
     6421 gccgaagcgc atccacgttt ccgtgatggc tatgcaatag gcaccgggcg ctggcgcgcg
     6481 ttgccgtttg ctatcaacgt actgacccac agcagacagc gatatcgacg taacttacgc
     6541 ttctatgctg atgacccaac gattcgcgtc ggtgggccga cctaccattg ggtacgcgaa
     6601 agtattctgg ctggcgaaca ggtgttagcc ggtgcgggtg atgacgccac gccaacgctt
     6661 ctcttgcagg ctgaagagga acgcgtggtg gataaccgca tgcatgaccg tttttgtgaa
     6721 ctccgcaccg ccgcgggcca tcctgtcgaa ggaggacggc cgttggtaat taaaggtgct
     6781 taccatgaga tcctttttga aaaggacgca atgcgctcag tcgcgctcca cgccatcgtt
     6841 gattttttca acaggcataa ctcacccagc ggaaaccgct ctacagaggt ttaaatttct
     6901 tatgtaccag gttgttgcgt ctgatttaga tggcacgtta ctttctcccg accatacgtt
     6961 atccccttac gccaaagaaa ctctgaagct gctcaccgcg cgcggcatca actttgtgtt
     7021 tgcgaccggt cgtcaccacg ttgatgtggg gcaaattcgc gataatctgg agattaagtc
     7081 ttacatgatt acctccaatg gtgcgcgcgt tcacgatctg gatggtaatc tgatttttgc
     7141 tcataacctg gatcgcgaca ttgccagcga tctgtttggc gtagtcaacg acaatccgga
     7201 catcattact aacgtttatc gcgacgacga atggtttatg aatcgccatc gcccggaaga
     7261 gatgcgcttt tttaaagaag cggtgttcaa atatgcgctg tatgagcctg gattactgga
     7321 gccggaaggc gtcagcaaag tgttcttcac ctgcgattcc catgaacaac tgctgccgct
     7381 ggagcaggcg attaacgctc gttggggcga tcgcgtcaac gtcagtttct ctaccttaac
     7441 ctgtctggaa gtgatggcgg gcggcgtttc aaaaggccat gcgctggaag cggtggcgaa
     7501 gaaactgggc tacagcctga aggattgtat tgcgtttggt gacgggatga acgacgccga
     7561 aatgctgtcg atggcgggga aaggctgcat tatgggcagt gcgcaccagc gtctgaaaga
     7621 ccttcatccc gagctggaag tgattggtac taatgccgac gacgcggtgc cgcattatct
     7681 gcgtaaactc tatttatcgt aatcgttctt tatttggtca gttgtcaacc tgatacttcg
     7741 ctacaatgga tactcgttaa tcaaagagtt ttccattgtg gcgctactta tcatcaccac
     7801 gattctgtgg gccttctcct ttagctttta tggcgagtac cttgcggggc acgtcgatag
     7861 ctattttgcg gtgctggtgc gcgttggcct ggcggcactc gtttttctgc cgtttctgcg
     7921 tacccgtggc aatagcctga aaacagtcgg cctgtatatg ctggtgggcg cgatgcagct
     7981 cggcgtgatg tatatgctga gtttccgcgc ttatctctat ctgacggttt ccgaactgct
     8041 gctgttcacc gtactgacgc cgctctacat cacgctgatt tatgacatca tgaataagcg
     8101 ccgtctgcgc tggggatatg cttttagtgc cttgttggcg gtgattggtg ccgggattat
     8161 tcgctatgat caggtcaccg accatttctg gactggcttg ttgctggtgc aactctccaa
     8221 tatcactttt gccatcggca tggtgggtta caaacgcctg atggaaactc gcccgatgcc
     8281 gcagcataac gcctttgcgt ggttctatct tggcgcgttc ctggtggcgg taattgcatg
     8341 gttcttgctg ggaaatgcgc agaaaatgcc gcaaaccacg ttgcaatggg gcattctggt
     8401 gtttcttggc gtggtggctt ccgggattgg ctactttatg tggaactacg gcgcgacgca
     8461 ggtggacgcc ggaacgctgg gaattatgaa taatatgcac gttccggcag ggctgctggt
     8521 aaacctggct atctggcacc aacagccgca ctggccaacg ttgattacag gcgcgctggt
     8581 gatcctggcc tcactgtggg tgcatcgtaa gtgggtcgct ccgcgctctt cacaaacggc
     8641 agatgatcgc aggcgtgatt gcgcgctgag cgaataaacg cttccgtaac tggctgacgc
     8701 tgctcgccat cgcgcacggc ggcgtacagt cggctccaca agccttcgcc cagggttttg
     8761 gtcaccacca gaccctggcg ctcaaaactc tctactaccc aatgcggtag cgcggcaata
     8821 cccatccgcg cggcaaccat ctgaatcaac aataaggtgt tatcgacgct tttcagtgac
     8881 ggactgacgc ctgccggctg aagaaaatgc cgccagacat ccagtcgact acgctgcacc
     8941 ggataaatta atagcgtctc gctggcgaga tcttccggtg taatacgcgt ttttgccgcc
     9001 agtggatggt caggtgctaa caccagacgc acttcatagt cgaacatcgg cgaataatgc
     9061 agaccactgc gcggcagaat atcggacgtc attaccagat ccagctctcc ctgttgcaag
     9121 gcgggctgcg ggtcaaatgt cacgcccgat ttaaagtcca tctcgacctg cggccagttc
     9181 ttatggaaat tttctaacgc gggcgtcagc cactgtatac agctatggca ctcaatggca
     9241 atgcgcagac gcgtctgctg cggttcattg caggcttgca gtgcctggct aatttgtggc
     9301 agcacctggt ttgccagttg caacaggatt tctccctgcg gtgtaaagcg aagcggctgg
     9361 cttttacgca caaatagccg gaagccaagg cgttgttcca gatcgctaaa ctggtgagac
     9421 agggcggatt gcgtttgatg caacgtcgcc gcagcggctg cgagtgagcc gcagttccgc
     9481 aacgcttgta gcgttttcag atgttttact tcgatcatga aagtccttca cttcggcatg
     9541 aataatttgc gcttgaggaa tatacagtaa ccgccaatta tggatgtgta aacatctgga
     9601 cggctaaaat ccttcgtctt ttaaatttat ggtgcgttgg ctgcgtttct ccaccccggt
     9661 cacttacttc agtaagctcc cggggatgaa taaacttgcc gccttcccta aattcaaaat
     9721 ccataggatt tacatataat tagaggaaga aaaatgacaa tattgaatca caccctcggt
     9781 ttccctcgcg ttggcctgcg tcgcgagctg aaaaaagcgc aagagagtta ttgggcaggg
     9841 aactccacgc gtgaagaact gctggcggta gggcgtgaat tgcgtgctcg tcactgggat
     9901 caacaaaagc aagcgggtat cgacctgctg ccggtgggcg attttgcctg gtacgatcat
     9961 gtactgacca ccagtctgct gctgggtaac gttccggcgc gtcatcagaa caaagatggt
    10021 tcggtagata ttgacaccct gttccgtatt ggtcgtggac gtgcgccgac tggcgaacct
    10081 gcggcggcag cggaaatgac caaatggttt aacaccaact atcactacat ggtgccggaa
    10141 ttcgttaaag gccaacagtt caaactgacc tggacgcagc tgctggagga agtggacgag
    10201 gcgctggcgc tgggccacaa cgttaagcct gtgctgctgg ggccggttac ctggctgtgg
    10261 ctggggaaag tgaaaggtga acagtttgac cgcctgagcc tgctgaacga cattctgccg
    10321 gtttatcagc aagtgctggc agaactggag aaacgcggca tcgagtgggt acagattgat
    10381 gaacccgcgc tggtactgga actaccacag gcgtggctgg acgcatacaa acccgcttac
    10441 gacgcgctcc agggacaggt gaaactgctg ctgactacct attttgaagg cgttacgcca
    10501 aatctcgaca cgattactgc gctgcctgtt cagggactgc atgtggacct tgtacatggt
    10561 aaagatggcg ttgctgaact gcacaagcgc ctgccttctg actggctgct gtctgcggga
    10621 ctgatcaatg gtcgtaacgt ctggcgcgcc gatcttactg agaaatatgc gcaaattaag
    10681 gacattgtcg gcaaacgtga tttgtgggtg gcatcttcct gctcgttgct gcacagcccc
    10741 atcgacctga gcgtggaaac gcgtcttgat gcagaagtga aaagctggtt tgccttcgcc
    10801 ttacaaaaat gccatgaact ggcactgctg cgcgatgcgc tgaacagtgg tgacacggca
    10861 gctctggcag agtggagcgc cccaattcag gcgcgtcgtc actctactcg tgtacataat
    10921 ccggcggtag aaaagcgtct ggcggcgatc accgcccagg acagccagcg tgcgaatgtc
    10981 tatgaagtgc gtgctgaagc ccagcgtgcg cgttttaaac tgccagcgtg gccgaccacc
    11041 acgattggtt ccttcccgca aaccacggaa attcgtaccc tgcgtctgga tttcaaaaag
    11101 ggcaatctcg acgccaacaa ctaccgcacg ggcattgcgg aacatatcaa gcaggccatt
    11161 gttgagcagg aacgtttggg actggatgtg ctggtacatg gcgaggccga gcgtaatgac
    11221 atggtggaat actttggcga gcacctcgac ggatttgtct ttacgcaaaa cggttgggta
    11281 cagagctacg gttcccgctg cgtgaagcca ccgattgtta ttggtgacgt tagtcgcccg
    11341 gcaccgatta ccgtggagtg ggcgaagtat gcgcaatctc tgactgataa accggtgaaa
    11401 gggatgctga ctggcccggt gaccattctc tgctggtcgt tcccgcgtga agatgtcagc
    11461 cgtgaaacca tcgccaaaca aattgcgctg gcgctgcgtg atgaagtggc ggacctggaa
    11521 gccgcaggaa ttggcatcat ccagattgat gaaccggcgc tgcgcgaagg tttaccgctg
    11581 cgtcgtagcg actgggatgc atatctccag tggggcgtgg aggccttccg tatcaacgcc
    11641 gccgtggcga aagatgacac acaaatccac actcacatgt gttattgcga gttcaacgac
    11701 atcatggatt ccattgcggc actggatgca gacgtcatca ccatcgaaac ctcgcgttcc
    11761 gacatggagt tgctggagtc gtttgaagag tttgattatc cgaatgaaat cggtccaggc
    11821 gtctatgaca ttcactcgcc aaacgtaccg agcgtagaat ggattgaagc cttgctgaag
    11881 aaagcggcaa aacgcattcc ggcagagcgc ctgtgggtca acccggactg tggcctgaaa
    11941 acgcgcggct ggccagaaac ccgcgcggca ctggcgaaca tggtgcaggc ggcgcagaat
    12001 ttgcgtcggg gatgatgaat attaacgagt cactgtaaat tgcagtacga tgaaagaggc
    12061 aaaactgcct gataccaggc ctacataatt tatgcaattt attgaatttt tgagttttgt
    12121 tggccggaca aggcgttcac gccgcatccg gcatgaacaa cgcgcacttt gccaataatc
    12181 tgatggcttc catcaccgga agccattttg ctatctgcgc ccgttcagat acagaaataa
    12241 ccgaatcatt tttacgcaaa atataatcct gagcgatttg ttcagtaatc aacgctacgt
    12301 tatttattct cacttttcac gaaattgtat cccttttcag taacgtggta gtgaggcata
    12361 gacttatgtc cgctatcctc aataataacc aaaccctcgt tagctaattt gttaacaatg
    12421 ttaacaacat taccgaatcc tggaatttgc cttatggata gtgtgcgatc gagattcatc
    12481 cagttccagt ttatatcttt ctcagccata actttcagta cgttaatttc agtttcagtt
    12541 atcatagtca agtgcatcct ggtggtataa gtcattaagt tctcccttaa gtttataatc
    12601 ttctagagta gcagtatgcg tatgattcca gagtgcatag cctgcgtcac catcaggttg
    12661 tcctgtttcc caaccaagat tacagtaacg ctgatattcc cgacactcat gagtatagaa
    12721 gttaagatct acttgttctg gggggatttt tcctttctca atgtctttca gtctattgat
    12781 catcacttca tttatagggt catgaccaaa tctggctatg tgtttttcaa caatagcgat
    12841 accttccctg ttgattgtta cgccatctgt cgtcagattt tctattggac caccggcaag
    12901 gtcgggatta aatg
//
LOCUS       DAJVUP010000121        12908 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.121, whole genome shotgun sequence.
ACCESSION   DAJVUP010000121 DAJVUP010000000
VERSION     DAJVUP010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12908
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.121"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1566
                     /locus_tag="OQQ75_003050"
     CDS             <1..1566
                     /locus_tag="OQQ75_003050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha amylase C-terminal domain-containing
                     protein"
                     /protein_id="HCS1977294.1"
                     /translation="IRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQ
                     PEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIR
                     AKISKDIESGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDE
                     WENLHALKEKRLNGMPKTTPKSGQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIE
                     RSITPPLKNYNERLHNTNLFNPKYQKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSA
                     IDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFL
                     FNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNKGCST
                     YQQLYNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNE
                     EVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIILPGKVFTLRGGTLNINIPGRSALL
                     LGKTGEPPNYLYL"
     gene            1902..2879
                     /gene="csiD"
                     /locus_tag="OQQ75_003051"
     CDS             1902..2879
                     /gene="csiD"
                     /locus_tag="OQQ75_003051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation induced protein CsiD"
                     /protein_id="HCS1977295.1"
                     /translation="MNALIAVQNNAVDSGQDYSGFTLIPSAQSPRLLELTFTEQTTKQ
                     FLEQVAEWPVQALEYKSFLRFRVGKILDDLCANQLQPLLLKPLLNRAEGALLINAVGI
                     DDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH
                     NDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYFRHPLARRPMRFAAPP
                     SKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVP
                     VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYATHHYQTHQ"
     gene            2899..4167
                     /gene="lhgO"
                     /locus_tag="OQQ75_003052"
     CDS             2899..4167
                     /gene="lhgO"
                     /locus_tag="OQQ75_003052"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417146.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HCS1977296.1"
                     /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTG
                     HNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERM
                     RALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
                     RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFI
                     ICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKR
                     EGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLS
                     LSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSK
                     VQTLLASQSNPGRTLRATRSVDALHAAFNQ"
     gene            4190..5625
                     /gene="gabD"
                     /locus_tag="OQQ75_003053"
                     /pseudo
     CDS             4190..5625
                     /gene="gabD"
                     /locus_tag="OQQ75_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311549.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
     gene            5639..6905
                     /gene="gabT"
                     /locus_tag="OQQ75_003054"
                     /pseudo
     CDS             5639..6905
                     /gene="gabT"
                     /locus_tag="OQQ75_003054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417148.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
     gene            7143..8504
                     /gene="gabP"
                     /locus_tag="OQQ75_003055"
     CDS             7143..8504
                     /gene="gabP"
                     /locus_tag="OQQ75_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005114089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GABA permease"
                     /protein_id="HCS1977297.1"
                     /translation="MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG
                     PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW
                     VLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV
                     IAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAE
                     IVTIAAAESDTPEKHIARATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV
                     LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP
                     YVAVLLSTGAAFLTVVVNYYVPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE
                     GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTDLLAIGIICTVPIMAA
                     GIS"
     gene            8563..9225
                     /gene="csiR"
                     /locus_tag="OQQ75_003056"
     CDS             8563..9225
                     /gene="csiR"
                     /locus_tag="OQQ75_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CsiR"
                     /protein_id="HCS1977298.1"
                     /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
                     EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGSDEWEA
                     DVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR
                     YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMA
                     GN"
     gene            complement(9226..9675)
                     /gene="kbp"
                     /locus_tag="OQQ75_003057"
     CDS             complement(9226..9675)
                     /gene="kbp"
                     /locus_tag="OQQ75_003057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium binding protein Kbp"
                     /protein_id="HCS1977299.1"
                     /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDAD
                     KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK
                     SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE"
     gene            complement(9759..9917)
                     /locus_tag="OQQ75_003058"
     CDS             complement(9759..9917)
                     /locus_tag="OQQ75_003058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HCS1977300.1"
                     /translation="MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIH
                     AFWVQTRD"
     gene            10100..10399
                     /locus_tag="OQQ75_003059"
     CDS             10100..10399
                     /locus_tag="OQQ75_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1977301.1"
                     /translation="MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL
                     TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP"
     gene            10409..10933
                     /gene="ygaP"
                     /locus_tag="OQQ75_003060"
     CDS             10409..10933
                     /gene="ygaP"
                     /locus_tag="OQQ75_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YgaP"
                     /protein_id="HCS1977302.1"
                     /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS
                     VLEQSGLPPKLRREQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDRIDGWKRAGLP
                     VAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG
                     MARLLDKMPWNQRA"
     gene            complement(10980..11384)
                     /gene="stpA"
                     /locus_tag="OQQ75_003061"
     CDS             complement(10980..11384)
                     /gene="stpA"
                     /locus_tag="OQQ75_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein StpA"
                     /protein_id="HCS1977303.1"
                     /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE
                     EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV
                     NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI"
     gene            12051..12500
                     /gene="alaE"
                     /locus_tag="OQQ75_003062"
     CDS             12051..12500
                     /gene="alaE"
                     /locus_tag="OQQ75_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-alanine exporter AlaE"
                     /protein_id="HCS1977304.1"
                     /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS
                     RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV
                     VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA"
     gene            complement(12537..12881)
                     /locus_tag="OQQ75_003063"
     CDS             complement(12537..12881)
                     /locus_tag="OQQ75_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaC family protein"
                     /protein_id="HCS1977305.1"
                     /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM
                     GRTALVIHPTLKERSSTLADPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL
                     ERYLNGLFGEAS"
BASE COUNT         3218 a         3164 c         3295 g         3231 t
ORIGIN      
        1 atcagggaaa atatgtctga gtttgcacgt tgccattatg ggtatataca aatccctcca
       61 gtgacaactt tccgcgccga cggaccagaa actcccgaag aagaaaaagg ttactggttt
      121 catgcttatc aacccgaaga tctttgtacc atccataacc caatgggaga tttgcaggat
      181 tttatcgcat tggttaaaga tgctaaaaaa tttggtatcg atatcattcc tgattataca
      241 tttaacttta tgggaatcgg gggtagtggt aaaaatgacc tggattatcc ctctgctgat
      301 atacgagcga agatcagtaa agatatagaa agcggtatcc ctggctattg gcaaggtcag
      361 gttttgattc cattcattaa agatccagta acaaaagaac gtaaacaaat ccatccagaa
      421 gatatacatc tcactgcaaa agacttcgaa gcaagtaaag ataacatctc taaggatgaa
      481 tgggaaaacc tccatgcatt aaaagaaaag cgtttaaatg gaatgcctaa aacaacaccc
      541 aaaagtggcc aggttattat gttgcaaaat caatacgttc gagaaatgcg aaaatatggc
      601 gtacgaggtt tacgttatga tgcggcaaaa cactcaaaac atgaacaaat agagaggtcg
      661 ataaccccac cgcttaaaaa ttataatgag cggttacaca atactaattt atttaaccca
      721 aaatatcaaa aaaaagccgt tatgaattac atggaatacc tggtaacttg tcagttggat
      781 gaacaacaaa tgtcatcact gctttatgag agagatgatt taagtgccat tgatttttct
      841 ttactcatga aaacgataaa agccttttca tttggtggag atctccaaac ccttgcatca
      901 aaaccgggtt ccacaatctc aagtatccca tcagaaagac ggatattgat taacattaac
      961 cacgattttc ctaacaatgg taatcttttc aatgactttc tatttaacca tcaacaagat
     1021 gaacaattag caatggcata tatggccgct ctcccgttca gcagaccttt agtttactgg
     1081 gatggccaag tattaaaatc aacgactgaa attaaaaatt atgatgggtc cacgcgtgtc
     1141 ggcggtgagg cgtggcttaa taaaggttgc tctacctatc agcagctcta caatgaattc
     1201 cacgcattat atatagataa agcaggaata tggagcgcat ttgagggtgt atttgcaact
     1261 aaaaacgttc tggcctttag tcgtggggat tctgtgaaca ttaatcactc tcctcatgat
     1321 gggctagtta taataaataa aggaaacgaa gaagttgaag gtacctggcc taacaaattg
     1381 caacctggaa tatacaaaaa catggggagt aatagcgtta acattattat taataatacc
     1441 cgaaaaatta tcctccctgg taaagtattt acgcttagag gcggaactct aaatatcaat
     1501 attcctgggc gtagcgctct tcttttaggg aaaacaggag aaccgccgaa ctatctctat
     1561 ttataattta atgttatatc tgccccgata aaacggggca gataatatgt ttagtttact
     1621 aacggtcatt ttgcagtgaa gccatttact gttttttatc gaccagataa tctgttctct
     1681 aatgttaact ccccctaacc tgttgcttta gttattcatt tcctgtctca ctttgcctta
     1741 ataccctacg ttaaatgtta ctaatttgtt gtttttgatc acaataagaa aacaatatgt
     1801 cgcttttgtg cgcatttttc agaaatgtag atatttttag attatggcta cgaaatgagc
     1861 atcgccatgt caccctacat ctcataagag gatcgcttct gatgaatgca ctgatcgccg
     1921 tacaaaataa cgctgtcgat tcaggccagg actatagcgg attcactctc atcccgtcgg
     1981 cgcaatcccc gcgtctgctg gaactcacct tcaccgaaca gacgaccaaa cagtttctcg
     2041 aacaggttgc cgaatggccc gtgcaggcgc tggagtacaa atcgtttctg cgttttcggg
     2101 taggcaaaat tcttgacgat ctgtgtgcga atcagctgca accattgctg ttgaagcccc
     2161 tgctaaaccg tgctgaaggt gcgctgttga tcaatgcggt gggtatcgat gatgtggcgc
     2221 aggcagatga gatggtgaag ctggcaacgg cggtagcgca tctgattggt cgctcaaatt
     2281 tcgatgcgat gagcggtcag tattacgcgc gtttcgtggt gaaaaatgtc gataactcag
     2341 acagctatct gcgtcagccg caccgcgtga tggaactgca caacgacggc acgtatgtcg
     2401 aagagatcac cgattacgtg ctgatgatga aaatcgatga gcaaaacatg cagggtggaa
     2461 attcgttgct gctgcatctc gatgactggg aacatctgga ccactatttc cgccatccac
     2521 tggcgcgtcg cccgatgcgc tttgccgcgc cgccgagcaa aaacgtcagc aaagatgttt
     2581 tccatccagt gttcgacgtt gatcaacagg gtcgcccggt gatgcgctat atcgaccagt
     2641 tcgtccagcc aaaagatttt gaagaaggcg tgtggttgag cgagctttcc gatgccattg
     2701 aaaccagcaa aggcattctt tctgtacccg ttcccgttgg caaattcctg ttgataaaca
     2761 acctgttctg gctgcacggt cgcgaccgct ttactccgca cccggatctg cgccgtgaac
     2821 tgatgcgtca gcgtggctat ttcgcttacg ccactcacca ctaccagacg catcagtaag
     2881 cgcaaaggaa ttgagcggat gtatgatttt gtgattattg gcggcggcat catcggcatg
     2941 tcgaccgcca tgcaactgat tgatgtttat ccggatgccc gcattgcgtt gctggaaaaa
     3001 gagtccggcc cggcctgtca ccagacgggc cacaacagcg gcgtgatcca tgccggggtc
     3061 tattacacgc ccggcagcct gaaggcgcag ttttgcctgg cgggaaaccg cgccaccaaa
     3121 gccttttgcg atcaaaacga cattcgctat gacaactgcg gcaagatgct gatcgccacg
     3181 tccgatctcg aaatggaacg gatgcgcgcg ttgtgggaac gcacggcggc gaacggtatc
     3241 gagcgcgagt ggttaaacgc cgaggaactg cgcgagcgcg aaccgaatat caccgggctc
     3301 ggcggcattt ttgtgccgtc cagcggcatt gtcagctatc gcgaagtcac agcggcaatg
     3361 gcaaaaatct tccaggccag aggcggtgag attatttata acgccgaagt cagcgccctc
     3421 agtgagcata aaaacggcgt ggtcgtccga acccgtcagg gcggcgaata tgaagcatcg
     3481 acgctgatta gctgttccgg gctgatggct aaccggctgg tgaaaatgct cggcctcgaa
     3541 ccgggtttta ttatctgccc gttccgtggc gagtatttcc gccttgcgcc ggagcataac
     3601 cagattgtta accatctgat ttaccccatc cctgacccgg caatgccgtt tttgggcgtg
     3661 catctcaccc gcatgatcga cggcagcgtg accgtcgggc caaacgcggt gctggctttt
     3721 aaacgcgaag gctatcgcaa gcgcgacttc tcatttagcg acacgctgga aattttaggc
     3781 tcgtcgggga ttcgccgggt gctgcaaaac catctacgct caggactggg cgagatgaaa
     3841 aactcgctgt gcaaaagcgg ctatctgcgg ctggtgcaaa agtattgtcc ccggctttcg
     3901 ttaagcgatc tccagccctg gcccgccggt gtgcgggcgc aggcggtatc gccggacggc
     3961 aagctgattg acgattttct gtttgtcacc accccgcgca cgatccacac ctgcaatgcg
     4021 ccctccccgg cagcgacatc agcaattcct attggtgcgc atattgtcag caaggtacaa
     4081 acgctgttgg caagccagag taaccccgga cgcacgctgc gagcgacacg tagtgtggat
     4141 gccttacacg ccgcatttaa tcaataacct ttgaaaacag gacgtaacaa tgaaacttaa
     4201 cgacagtaac ttattccgcc agcaggcgtt gattaacggg gaatggctgg acgccaacaa
     4261 tggcgggatc atcgacgtca ccaatccggc gaacggcgac aagctgggta gcgtgccgaa
     4321 aatgggcgct gatgaaaccc gcgccgctat cgacgccgcc aaccgcgccc tgcccgccag
     4381 gcgtgcgctc accgccaaag aacgcgccaa cattctgcgc aactggttca atttgatgat
     4441 ggagcatcag gacgatttag cgcgcctgat gaccctcgaa cagggcaaac cactggccga
     4501 agcgaaaggc gaaatcagct acgctgcctc ttttattgag tggtttgccg aagaaggcaa
     4561 acgtatttat ggcgatacca ttcccggtca tcaggccgat aagcgcctga ttgttatcaa
     4621 gcagccgatt ggcgttaccg cagctatcac gccgtggaac ttcccggcgg cgatgattac
     4681 ccgtaaagcc ggtccggcgc tggcggcagg ctgcaccatg gtgctgaagc ccgccagtca
     4741 gacaccgttc tctgcgctgg cgctggcgga gctggcgatt cgcgcgggca ttgcggctgg
     4801 cgtgtttaac gtggtcaccg gttcggcagg cgcggtcggt aatgaactga ccagcaaccc
     4861 gctggtacgc aaactgtcgt ttaccggttc gaccgaaatt ggccgacagt taatggaaca
     4921 gtgcgcgaaa gacatcaaaa aagtgtcgct ggagctgggc ggcaacgcgc cgtttatcgt
     4981 ctttgacgat gccgatctcg ataaagccgt ggaaggcgcg ctggcctcga aattccgcaa
     5041 cgccgggcaa acctgcgtct gcgccaaccg tttggcgtgt atgaccgctt tgccgaaaaa
     5101 ttgcagcagg cggtgagcaa actgcacatc ggcgacgggc tggataaagg cgtcaccatc
     5161 gggccgctga tcgatgaaaa agcggtagca aaagtggaag agcatattgc cgatgcgctg
     5221 gagaaaggtg cgcgtgtggt ttgcggcgct aaagcggatg aacgcggcgg caacttcttc
     5281 cagccgacca ttctggtgga cgtgccggcc aacgccaaag tgtcgaaaga agagacgttc
     5341 ggccccctcg ccccgctgtt ccgctttaaa gatgaagccg atgtgattgc gcaagccaat
     5401 gacaccgagt ttggccttgc cgcctatttc tacgcccgtg atttaagccg cgtcttccgc
     5461 gtgggcgaag cgctggagta cggcatcgtc ggcatcaata ccggcattat ttccaatgaa
     5521 gtggccccgt tcggcggcat caaagcctcg ggtctgggtc gtgaaggttc gaagtatggc
     5581 atcgaagatt acttagaaat caaatatatg tgcatcggtc tttaactgga gaatgcgaat
     5641 gaacagcaat aaagagttaa tgcagcgccg cagtcaggcg attccccgtg gcgttgggca
     5701 aattcacccg attttcgctg accgcgcgga aaactgccgg gtgtgggacg ttgaaggccg
     5761 tgagtatctt gatttcgcgg gcgggattgc ggtgctcaat accgggcacc tgcatccgaa
     5821 ggtggtggcc gcggtggaag cgcagttgaa aaaactgtcg cacacctgct tccaagtgct
     5881 ggcttacgag ccgtatctgg agctgtgcga gattatgaat cagaaggtgc cgggcgattt
     5941 cgccaagaaa acgctgctgg ttacgaccgg ttccgaagcg gtggaaaacg cggtaaaaat
     6001 cgcccgcgcc gccaccaaac gtagcggcac catcgctttt agcggcgcgt atcacgggcg
     6061 cacgcattac acgctggcgc tgaccggcaa ggtgaatccg tactctgcgg gcatggggct
     6121 gatgccgggt catgtttatc gcgcgcttta tccttgcccg ctgcacggca taagcgagga
     6181 tgacgctatc gccagcatcc accggatctt caaaaatgat gccgcgccgg aagatatcgc
     6241 cgccatcgtg attgagccgg ttcagggcga aggcggtttc tacgccgcgt cgccagcctt
     6301 tatgcagcgt ttacgcgctc tgtgtgacga gcacgggatc atgctgattg ccgatgaagt
     6361 gcagagcggc gcggggcgta ccggcacgct gtttgcggtg gagcagatgg gcgtggcgcc
     6421 ggatcttacc acctttgcga aatcgatcgc tggcgggcgt caccgggcgc gcggaagtga
     6481 tggacgctgt tgcaccgggc ggtctgggcg gcacctatgc cggtaacccg attgcctgcg
     6541 tggctgcgct ggaagtgttg aaggtgttcg agcaggaaaa tctgctgcaa aaagccaacg
     6601 atctggggca gaagctaaaa gacggattgt tggcgatagc cgaaaaacac ccggagatcg
     6661 gcgacgtacg cgggctggga gcgatgattg ccatcgagct gtttgaagat ggcgatcaca
     6721 gcaaaccgga cgcaaaactc accgccggga tcgtggcacg cgcccgcgat aagggcctga
     6781 ttcttctctc ctgcggcccg tattacaacg tgctgcgcat ccttgtactg ctcaccattg
     6841 aagacgctca gatccgtcag ggtctggaga ttatcggtca gtgttttgat gaggcgaagc
     6901 agtagcaccg tccccatgca ggaggcgacg ctgcgcgtct tgtccggcct acgagaatcc
     6961 aggtcggata aggcgtttac gccgcatccg acaatctgta cgtgaacagg aataaatcta
     7021 tgtcggccgg ataatgcgga gccgctctcc ggcaaaaaga atcaataaca attaaacgcg
     7081 tgacccggcg cgggaaatgt cggggcgctc tcccaagtga cacactttcg agaggattca
     7141 ggatggggca atcatcgcaa ccacatgagt taggcggcgg gctgaaatca cgccacgtca
     7201 ccatgttgtc tattgccggt gttatcggcg caagtctgtt tgtcggttcc agcgtcgcca
     7261 tcgccgaagc gggcccggca gtattactgg cctatctgtt cgccgggcta ctggtggtta
     7321 tgattatgcg gatgttggcg gaaatggcgg ttgccacgcc cgataccggt tcgttttcca
     7381 cctatgccga taaagccatt ggtcgctggg cgggctatac catcggctgg ttgtactggt
     7441 ggttttgggt actggttatc ccgctggaag ccaacatcgc cgccatgatc ctgcactcgt
     7501 gggttccagg cattcccatc tggttatttt ccctcgtcat tacccttgcc ttaactggca
     7561 gtaatttatt aagcgttaaa aactacggcg aatttgagtt ctggctggcg ctgtgcaaag
     7621 tcatcgctat cctggccttt attttccttg gtgcagtcgc aattagcggt ttttaccctt
     7681 atgccgaagt gagcgggatc tcaagattgt gggatagcgg cggctttatg cccaacggct
     7741 tcggtgcggt attaagcgcg atgttgatca ccatgttctc gtttatgggc gcagaaattg
     7801 tcaccattgc cgccgcggaa tccgacacgc cggaaaaaca tattgcccgc gccactaact
     7861 cggttatctg gcgtatttct atcttctatt tgtgctctat ttttgtcgtc gtggcattaa
     7921 ttccgtggaa tatgcccgga ctaaaagccg tcggttctta tcgctcggta ctggaattgc
     7981 tcaatattcc ccatgcgaaa ttaatcatgg actgtgtgat attactttcc gtaaccagct
     8041 gcctgaactc ggcgctgtat accgcttcca ggatgctcta ctccttaagc cgtcgcggag
     8101 atgcgcctgc ggtaatgggt aaaatcaacc gcagtaaaac cccgtacgtg gcggtgttac
     8161 tctccaccgg cgcggcattc ttaacggtgg tggtgaacta ttacgtgcct gcgaaggtat
     8221 ttaaatttct gatcgacagc tccggcgcta tcgccctgct ggtttattta gtcatcgccg
     8281 tttcacagtt gcggatgcgc aaaattctgc gagcagaagg aagcgaaatt cgcttgcgca
     8341 tgtggcttta tccctggctc acctggctgg tcatcggctt tattaccttt gtgttggtag
     8401 tgatgctatt ccgcccggcg caacagttag aagtgatctc caccgactta ttagcaatag
     8461 ggattatctg taccgtgcca attatggcgg ctggaataag ctgataatgt ggcaaaaaac
     8521 acccgttcat aatacgcgct gataataatc aggagtcaca ccatgaccat tacgtctctg
     8581 gatggctatc gctggctgaa gaacgatatt attcgcggta attttcaacc ggatgaaaaa
     8641 ttacggatga gtttgctgac atcgcgttat gcacttggcg ttgggccgtt gcgggaagca
     8701 ctttctcaac tggtggcgga acggctggtc acggtggtga atcaaaaagg gtatcgggtg
     8761 gcgtctatgt cagagcagga gctgctcgat attttcgatg cccgcgccaa tatggaagcg
     8821 atgttagtga gtctggcgat tgcccgcggt agcgatgagt gggaggcaga cgttctcgca
     8881 aaagcgcatc tgctcagtaa gctggaagcc tgtgacgcca gcgagaaaat gcttgatgag
     8941 tgggatctgc gtcatcaggc gtttcataca gcaattgtgg cgggctgtgg ttctcactat
     9001 ttgctgcaaa tgcgtgaacg gttgtttgat ctggcggcgc gctatcgatt tatctggctg
     9061 cggcgaacgg tgctttcggt agaaatgctg gaggataaac acgatcagca ccagaccctg
     9121 actgcggcgg tactggcgcg agataccgcg cgcgccagtg agttaatgcg ccagcattta
     9181 ctgacgccaa ttcccattat ccagcaggcg atggctggca attaactact cttccggaat
     9241 acgcaacact tgccccggat aaattttatc cgggcttttt agcatcggtt tattcgcttc
     9301 gaagatttta ttgtacagat tagcgttacc gtagacctgt ttggaaatgg cactcagagt
     9361 gtcgccagac ttaacggtat aaaactggct ggcagtggct ggtgtcgccg ttttcacctg
     9421 atcatcaaca ctggcaatac cggaaatatt ccccaccgca acaaggattt tctccttcgc
     9481 ctcctgactc aggccgtcac cagtgaccgt cgctttgccg tcggcaattt gaatgttcac
     9541 tttatcggca tcaggtatac cggttttgct cagatgctcc tgcaccttct tcgcctgatc
     9601 gtctttatcg tgctgacctg taaccgcgtc ccagagtttt tctccggcat ctttcacaaa
     9661 attgaacaga cccatagcta cctcattcgt taacggaaac actcagaaag tgtagcagag
     9721 gaacgcggcg cgttaacgcc gcggggggga gcacaggttt aatcgcgggt ttgcacccag
     9781 aacgcgtgaa tcaaaccggg gatataccca agcagtgtca gcagaatatt aataatgaac
     9841 gcccaaccga accctttacc gagcagcacg ccgagcggcg gcagaatgat ggtgatgacg
     9901 attctccaga aacccatatg tactccctat aagaaaatta ctcattgttt aaaaagagat
     9961 tttatctctt aagcgtagta attttagcgg agcctgccag tttcagctta cgcttttact
    10021 ctcatttacg ctgctgaggc tggtatatgt tgcattttta gtttagagtt tacttaattt
    10081 agaaaatact taaataaata tgactgaact cgcgcaatta caggccagtg ccgaacaggc
    10141 agcggcctta ttgaaagcaa tgagccatcc taaacgattg ctgattctgt gcatgcttag
    10201 cggttccccc ggcaccagcg cgggagagct gacgcgcatt accggactga gtgcctctgc
    10261 gacatcacag catctcgctc gtatgcggga cgaagggctt atcgacagcc aacgggatgc
    10321 ccaacgcatt ctatattcca ttaaaaatga ggcggtaaat gccattatcg ccaccctgaa
    10381 aaatgtctat tgtccgtaag gagtcactat ggctttgaca accatttcgc cgcatgatgc
    10441 acaagaatta atcgcacgcg gcgcaaagtt aatcgatatt cgtgacgctg atgaatatct
    10501 tcgtgaacat attcctgaag cagatctggc tccattatcc gtgctggaac agtcaggtct
    10561 tccacctaaa ttacgtcgcg agcaaattat attccactgc caggcaggta aacgcaccag
    10621 taataacgcc gataaattag cagcgattgc cgcccccgca gaaatatttt tactcgaaga
    10681 taggattgat ggctggaaaa gagctggatt gccagtagcg gtaaataaat ctcaaccctt
    10741 gccgttaatg cgccaggtgc agatcgctgc gggtggttta atattaatcg gcgttgtact
    10801 gggttatacc gtaaatagcg gtttcttctt attaagtggc tttgttggtg ccgggttact
    10861 gtttgcagga atcagcggtt tttgtggaat ggcaaggttg ttagataaga tgccgtggaa
    10921 ccaacgagct tgagaagcga cgccggacgc gccctagcag cgacatccgg cctcagtaat
    10981 tagatcagga aatcgtcgag agatttacct tctgccagcg cctgagcaat tggcttcggt
    11041 gtacggccct gaccggtcca ggtcttagtt tcaccgttaa catcagtgaa tttatatttc
    11101 gccggacgcg gctggcgttt tttaccagca cgtggtgcag cagcagagct attacccaat
    11161 aactcttccg ggttaattcc gtcagctttc atcagctcca gccaggtgct aattttttcc
    11221 tgacgctcag ccagttcacg ctgctgctgt tcttcttctt cacgtctttc tttagtgaca
    11281 accctgaatt tttcgagcat ttcttcaaga acgtcaatgg agaattcgcg agccatcgca
    11341 cggagggttc gaatgttatt taaactttgt aacattacgg acataataaa gaaaaccttt
    11401 taacgccaaa acaaaaaagt atttcgtcgc gtagtgtaag cgatcactta ttatatttcc
    11461 acaaaattta atctatttac agtcctgcgc gagattattt cagctgttat tttctgaaac
    11521 tctcagaata atttcaagat tatatattag ccattttgat gagtaattta ggttattggt
    11581 gaacagagtg gcgctctctg ctcgctaact ccgcaagcct gataaaaccg aagtgaataa
    11641 aaatgcaata taacagaata aaagaaaaca cccctcactg gtgctttctg ctgttaatgt
    11701 acattttctg gcatcaaaaa tgctgtaaat gacccggtca cgacaaacac cgaattctct
    11761 acgcttatag cgttacctca cccccaaact ttcattagtg aaattaaagg caaggtcata
    11821 tccaattgat ttaattgaaa ataaatcata tcggcatgta aaaatccaca atgtacaaaa
    11881 aacgagctgt tacggaatat tttatctaca aaaactgact aaataaaagt ttttcactaa
    11941 ttgattagtc atagccagcg atatacgcta tgcgaaaatg cagatggcaa tgagatccac
    12001 tgctttcatc tccattaaca tcccattacg ctttattaag gagcattagc atgttctcac
    12061 cgcagtcacg cttgcgtcat gcagttgcag atacgttcgc gatggttgtt tactgttctg
    12121 tcgtgaacat gtgtattgaa gttttcctct ccggaatgag cttcgaacag tctttttatt
    12181 ccagattggt agcgattccg gtgaacatct taattgcatg gccatacggt atgtaccgcg
    12241 atctgtttat gcgcgcggca cgcaaagtta gcccgtcggg ctggataaaa aatctggctg
    12301 atatcctggc ttatgtgacg ttccagtcac cggtgtatgt ggcgatcttg ttagtggtgg
    12361 gcgcagactg gcatcagatt atggcggcgg tcagttcaaa catcgttgtt tcgatgttga
    12421 tgggggcggt ttatggctac ttcctcgatt attgccgccg actgtttaaa gtcagccgtt
    12481 accagcaggt aaaagcctga ctcttctttt cgcgactggc atcgccagtc gcgtctttaa
    12541 ctggcttcgc caaataaacc attcaaataa cgttcaagcg caacacgcga actgaagcca
    12601 tgcgggatac cgtaatgctc gtgtcgctcg cctgctaaat agagcggaaa ttgctggtaa
    12661 tgatcgcaag ttttaatatc ggaagcgggg tcagccagtg ttgaactgcg ttcttttaat
    12721 gttggatgaa ttaccagagc ggtacgtccc attcgcgctt cgcgattaac atagacataa
    12781 ttttccccac ggcggtaacc atacgctttc tgggttacca catcgacagt aaaaccgact
    12841 ttttcaagta cgcgcgccac ctcgtctggt cgtaaataca tatttgatcc tcgttatttt
    12901 caaccgcg
//
LOCUS       DAJVUP010000122        12900 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.122, whole genome shotgun sequence.
ACCESSION   DAJVUP010000122 DAJVUP010000000
VERSION     DAJVUP010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12900
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.122"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(75..1697)
                     /gene="eutB"
                     /locus_tag="OQQ75_003064"
     CDS             complement(75..1697)
                     /gene="eutB"
                     /locus_tag="OQQ75_003064"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HCS1977306.1"
                     /translation="MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQA
                     QTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL
                     RESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAYEDDCVT
                     RLIQDDVNETAYNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSEVVAAVAKICSN
                     ADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRDDVQSIAAQIYEGLSFGVGDAV
                     IGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRRGAPGGLIFQS
                     ICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANFGADQV
                     TMEARNYGLARHYDPFIVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMGCDC
                     CYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTTAFHDTATVRQLLNL
                     RPSPEFERWLESMGIMANGRLTKRAGDPSLFF"
     gene            complement(1687..2522)
                     /gene="eutJ"
                     /locus_tag="OQQ75_003065"
                     /pseudo
     CDS             complement(1687..2522)
                     /gene="eutJ"
                     /locus_tag="OQQ75_003065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311343.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
     gene            complement(2533..3936)
                     /locus_tag="OQQ75_003066"
     CDS             complement(2533..3936)
                     /locus_tag="OQQ75_003066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HCS1977307.1"
                     /translation="MNQQDIEQVVKAVLLKMQSSDTPPAAVHEMGVFASLDDAVAAAK
                     VAQQGLKSVAMRQLAIAAIREAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTP
                     GVECLSPQVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVIFAP
                     HPAAKKVSQRAITLLNQAIVAAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGE
                     AVVEAARKHTNKRLIAAGAGNPPVVVDETADLARAAQSIVKGASFDNNIICADEKVLI
                     VVDSVADELMRLMEGQHAVKLTAEQAQQLQPVLLKNIDERGKGTVSRDWVGRDAAKIA
                     AAIGLNVPQETRLLFVETTAEHPFAVTELMMPVLPVVRVANVADAIALAVKLEGGCHH
                     TAAMHSRNIENMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR
                     TFVRLRRCVLVDAFRIV"
     gene            complement(3948..4235)
                     /gene="eutN"
                     /locus_tag="OQQ75_003067"
     CDS             complement(3948..4235)
                     /gene="eutN"
                     /locus_tag="OQQ75_003067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutN"
                     /protein_id="HCS1977308.1"
                     /translation="MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAI
                     DNIGAGTGEWVLLVSGSSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK"
     gene            complement(4342..4635)
                     /gene="eutM"
                     /locus_tag="OQQ75_003068"
     CDS             complement(4342..4635)
                     /gene="eutM"
                     /locus_tag="OQQ75_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
                     /protein_id="HCS1977309.1"
                     /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM
                     VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL"
     gene            complement(4674..5690)
                     /gene="pta"
                     /locus_tag="OQQ75_003069"
     CDS             complement(4674..5690)
                     /gene="pta"
                     /locus_tag="OQQ75_003069"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1977310.1"
                     /translation="MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPIL
                     VANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTD
                     PLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSFIFLMLPQYSGP
                     ALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANV
                     QQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIG
                     YNIAQRLGGYRAVGPLIQGLAVPMHDLSRGCSVQEIIELALVAAVPRQTEVNRESSLQ
                     TLVE"
     gene            complement(5680..6489)
                     /gene="eutT"
                     /locus_tag="OQQ75_003070"
     CDS             complement(5680..6489)
                     /gene="eutT"
                     /locus_tag="OQQ75_003070"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001425897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization cob(I)yrinic acid
                     a,c-diamide adenosyltransferase EutT"
                     /protein_id="HCS1977311.1"
                     /translation="MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLR
                     IKFIDEQGRLFVDDEQQKPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKM
                     VAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGC
                     QAIVGLSDEDLHRLSHQPLRYLDHDHLVLEASHGRDAALLNLLRTKVRETETVAAQVF
                     ITRSFEVLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQIQQRLGERNDY"
     gene            complement(6486..7187)
                     /gene="eutQ"
                     /locus_tag="OQQ75_003071"
     CDS             complement(6486..7187)
                     /gene="eutQ"
                     /locus_tag="OQQ75_003071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutQ"
                     /protein_id="HCS1977312.1"
                     /translation="MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFT
                     ITECDESIPVTASVPASVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQ
                     SLEQGAMQPSFKSVTGKGGIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAG
                     FMQWENAFFPWTLNYDEIDMVLEGVLHVRHEGQTMIAKAGDVMFIPKGSSIEFGMTSS
                     VKFLYVAWPANWQSL"
     gene            complement(7162..7641)
                     /gene="eutP"
                     /locus_tag="OQQ75_003072"
     CDS             complement(7162..7641)
                     /gene="eutP"
                     /locus_tag="OQQ75_003072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutP"
                     /protein_id="HCS1977313.1"
                     /translation="MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDT
                     PGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD
                     MPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE"
     gene            complement(7654..7989)
                     /gene="eutS"
                     /locus_tag="OQQ75_003073"
     CDS             complement(7654..7989)
                     /gene="eutS"
                     /locus_tag="OQQ75_003073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HCS1977314.1"
                     /translation="MDKERIIQEFVPGKQVTLAHLISHPGEELAKKIGVPDAGAIGIM
                     TLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLN
                     YTLCEMTKS"
     gene            complement(8281..10560)
                     /gene="maeB"
                     /locus_tag="OQQ75_003074"
     CDS             complement(8281..10560)
                     /gene="maeB"
                     /locus_tag="OQQ75_003074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxaloacetate-decarboxylating
                     malate dehydrogenase"
                     /protein_id="HCS1977315.1"
                     /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA
                     APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA
                     GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH
                     DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV
                     CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK
                     MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV
                     GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI
                     APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG
                     EEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK
                     EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV
                     VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG
                     IEPRVALLSHSNFGSSDCPSSSKMRQALELVRDRAPDLMIDGEMHGDAALVEAIRNDR
                     MPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV
                     RRIVNMVALAVVEAQTQPL"
     gene            10849..11799
                     /gene="tal"
                     /locus_tag="OQQ75_003075"
     CDS             10849..11799
                     /gene="tal"
                     /locus_tag="OQQ75_003075"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1977316.1"
                     /translation="MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL
                     SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSF
                     DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGISAAEELEKEGINCNLTLLFSF
                     AQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYE
                     TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS
                     EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL"
     gene            11819..>12900
                     /locus_tag="OQQ75_003076"
     CDS             11819..>12900
                     /locus_tag="OQQ75_003076"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416960.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1977317.1"
                     /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL
                     KHNPTDPTGYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI
                     GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
                     ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH
                     DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL
                     GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGDLPK
                     DWEKTTQKYINELQANPAKIATRKAS"
BASE COUNT         2875 a         3695 c         3353 g         2977 t
ORIGIN      
        1 tcccattgac gccatcacgc tgcgtacaat ttcttcaatc tgtttttgat ccatgatgtg
       61 ttatctccgc gtcatcagaa gaacagtgac ggatcgcccg cccgtttggt caggcgaccg
      121 tttgccataa tgcccatgct ttccagccag cgttcaaact ctggtgacgg gcgcaggttg
      181 agtaactgac gcacagtggc ggtatcgtgg aatgcggtgg tctggtagtt gagcatgatg
      241 tcatcaccca gcggcatccc catgatgtag ttgcagcctg cggtggcgag caggatcatc
      301 aggttttcgt tgaggttctg gtcagcgtca gcgtggttgg tgtagcagca gtcacagccc
      361 atagagatgc cgctcagctt gcccataaag tgatcttcta agccagcacg gataatctgg
      421 cggtcgttgt agagatactc cggcccaata aagccgacca cggtgttgac gataaacgga
      481 tcgtaatgac gcgccagccc atagttacgt gcttccatcg tcacctggtc agcgccgaag
      541 ttagcgccag cggatagcgc agagccttgt ccggtttcga agtagaggca gttttccccg
      601 gcgatacggt tgaactctgc acccactgcg cgcgcttcgt cgagcatcgc cagttccacg
      661 ccaaactctt tcagcccttt ttcgctgcca cagatactct ggaaaatcag tccgccaggc
      721 gcgccgcgac gaatcgcttc gatctgggtg gtgacgtgcg ccagtacgca gccctgagtt
      781 gggatgttga atttgtcgat cacgccataa atggtatcca gcacgcggct taagttttcc
      841 acgtcgtcag ttaccgggtt gacgccgatc accgcatcgc ccaccccgaa ggaaagccct
      901 tcgtagattt gcgcggcgat actttgcacg tcgtcacgag tgtcatttgg ctgcaaacgg
      961 gcgctgaagg tgcccggaat accgatggtg gtattggcct ttttgattac cggcattttc
     1021 ttcgcgccgt agatcaggtc cgcgttggag caaatcttcg ctaccgccgc gaccacttcc
     1081 gaggtcagcc ctttgcgggt aaaggcaatg tcgtccacgc tagtttcatc gctcagcaca
     1141 tactcacgca gttcgctgat gctccagttt ttaatctggt tgtaggccgt ttcgttaaca
     1201 tcgtcctgaa tcagccgcgt cacgcagtca tcttcatagg caatcagcgg caagcgcggt
     1261 tgcagaacgc tggtttctga catctctgcc agcgtgctat ccgggttcgt caccagcaac
     1321 gccacggctt tcgccgcatc cagcaccgag ccgccgccaa atgcgatcac cccatcacag
     1381 cctgactcac gcaactgcgc cacggctgca cacacgtcgg tgatgcacgg ttcgcccacc
     1441 ggacatggcc agagcgtcat ggcgatgcct ttaacagcca ggctgcgcgt cagcccggcg
     1501 gtcatccctg cctgatgcaa aaagctgtct gccatcacga acagatgttt cagcccacgc
     1561 gtttgcgctt gctgtccgca actgctcacc gagcccggac cgcaaagcgt caccggtgga
     1621 acgctaaatg tttttacccg ttgcagattc agggtatcga acgcctgaaa gagcgcggtc
     1681 tgcaattcat tttgcatata gcccctccgc tttctctcgc ccactactgg cgatcgccag
     1741 cggggtcata aacaaactgt gctgcggtaa atgcacctgt aacgccggga attgtttgcg
     1801 aaacagttcc gccacgcccg gttgcataca agagccgccc gccagccata aatcagtaat
     1861 gccctgccct tcaatatgcc gggcgacaat gtccgccatt ttttcgtaca ccggtttcac
     1921 cgtaggccaa atctcttcac cgtgaccgcg cttgtactgc tccgcctctt ccagcgaaat
     1981 acggcgattt ccggcgagag tcagagagat gtgatgtccg ccggttgctt catccgccga
     2041 gtacgtcacc ttgccctttt tcacgatggc aatgccggta gtgccgccgc cgatatccac
     2101 tacaccggcg ttgtccagtt gcagcagctc cgcaactgcg gttggctcat ccagcacatg
     2161 gccacttcca gtccagcaga ctccagcacg ttgatggaaa tacgcgggtc cgtacctgga
     2221 ggaaatgaag tcgccgcatg gctaaaacgg cgaccgaatt gctgctcgag cgtgtcgaga
     2281 tggcgacgaa caatggtgac agcgccgaag aaatcccaga cgatgccgtc gcggaccaca
     2341 tcggcccagt cgaggcatac cgccaccggc tgaccgtcgc ggtcgacaac catcgacacc
     2401 acatcgcagg tgcccagatc cacccccagc cacagcggag attccgtcgc ggcgggcgtc
     2461 tggttacaca gcgttgccgc cgtttgcaga cgtggggtga gccattgttc gtcgtgcgcc
     2521 atctgttact ccttaaacaa tgcgaaacgc atcgactaat acacagcgac gcagacggac
     2581 aaacgtacgc gcgctggtta ccccttcacc ggttggcgtg gtgatggtca tggtggtcca
     2641 gccttccccg cccagcccca gcccggcaat gcacggtccg ttcttaacga aaatgctggt
     2701 atcaatagca ttcgccatct ggttcatgtt ttcgatgttg cgcgagtgca ttgccgccgt
     2761 gtggtggcaa ccgccttcca gtttcaccgc cagcgcaatg gcatccgcca cgttggcgac
     2821 gcgcacgacg ggcagcaccg gcatcatcag ttcggtcacg gcaaacggat gttctgcagt
     2881 ggtttccaca aacagcaaac gcgtttcttg cggcacgttc aggccgattg ccgccgcgat
     2941 tttcgccgca tcgcgaccaa cccagtcacg gctgacggtg ccttttccgc gctcgtcgat
     3001 atttttcagc aacaccggtt gcagctgctg cgcctgttct gcggtcagtt tcaccgcgtg
     3061 ctggccttcc atcagacgca tcagttcatc ggctacgcta tcaacaacaa tcagtacctt
     3121 ttcgtcggca caaatgatgt tgttatcgaa agaagcgcct ttgacgatgg actgagcggc
     3181 acgggcgagg tcggcggttt catccaccac taccggcggg ttgccagcgc ctgcggcaat
     3241 cagacgttta ttggtgtgtt tacgcgccgc ttctactacc gcttcgccgc cggtcaccac
     3301 cagaaggccg atgcccggaa acttgaacaa acgctgcgcg gtttcgatat ccggatttgc
     3361 cacagtaacc agtaagtttt ccggcccgcc tgcggcaaca atcgcctggt tgagcagcgt
     3421 gatcgcccgc tgggagactt ttttcgccgc cggatgcggg gcaaaaatga cgctgttgcc
     3481 cgcggcaatc aggctgatgg cgttattaat tacggttgcc gccgggttag tggacggagt
     3541 taccgaagcc accacgcccc agggcgcgtt ttcaattaaa gtcaggccgt tgtcgccggt
     3601 cagcacctgc ggagagagac actcaacgcc tggcgtgccg cgcgcctgag cgacgttttt
     3661 ggcaaattta tcttcaacgc ggcccatgcc ggtttcactg acggcaagtt ccgctaaatc
     3721 tctggcgtgt ttttcgcctg cctcacgaat ggcagcaatg gctaactggc gcattgccac
     3781 gctttttaac ccttgctggg cgactttggc tgccgcaacg gcgtcatcca gggacgcgaa
     3841 aacgcccatc tcatgaacgg cggcgggcgg cgtgtcactg ctttgcattt tcagcagtac
     3901 cgctttcacc acctgttcaa tatcctgttg attcatgatg ttctgcctta tttgtggaaa
     3961 attacctgac cgccagacac cacctcatcg acaatgccaa tcacgcacag atcgaccggt
     4021 gacgtttcgc ttttatgcgc ctggcgggcg gaactgccac tcaccagtaa cacccactcc
     4081 ccggttcccg cgccaatatt gtcgatggcg acggcgcatt gcccgtcagg attaccttgt
     4141 ggatcaatca tttccaccat cagcaatttg tcatgcgcca gtccgtgatg gcgtacggta
     4201 caaacaattt gtccagtgac gactgccagt ttcatacccg cctccgtggc gtatttcagg
     4261 taaaagctcc ccctaccctc cgcagaaggt aaaatgaaaa aggagagagc gtaacgcccg
     4321 aatcgacgtc acacagggtg attacaggtt gctgctatcg cctttcaggc cgatcgggaa
     4381 gacttcttcc aggtcgccgt gcggacgcgg gataacgtgt acagatacca gctcgccgat
     4441 acgctgtgcc gctgcggcac ctgcatcggt cgcggcttta caggctgcaa catcaccacg
     4501 aaccatggca gtacacaggc cgccgccaat ctgcttaaca ccaaccagct tgacgcgcgc
     4561 agctttcacc atcgcgtcag aagcctcaat cagtgcaacc aggccccggg tttcgatcat
     4621 tcctaatgct tccattgtgc tttcctcttt atcagggtcc agaacgggac cgttcattca
     4681 accagtgttt gtaaactgct ttcgcggttc acttctgtct gacgcggcac agctgccacc
     4741 agcgccagct cgataatttc ctgcacgcta caaccacgag agagatcgtg catcggcacg
     4801 gcaagtcctt gtatcagtgg cccgacggca cgatatccgc cgagtcgttg tgcgatgttg
     4861 taaccaatat ttccggcttc cagcgacgga aaaaccatca cattggcctt gccctgtagc
     4921 gggctggcag gcgctttttg cgccgccact tccggcacga aggcggcgtc aaactgtaac
     4981 tcgccatcca ccaccagctt tggtgcgcgc tcacggacga tttctgtcgc ctgctggacg
     5041 ttagcaacac aggggtgacg ggcgctacca ttgctggaaa acgacagcat cgccacgcgc
     5101 ggctcttctc cggtgatggc gcgccaggtt tcggcactgg caagcgcgat atccgccagc
     5161 tgcgccgccg tcggctgtgg caccacgctg caatcggcaa agcccaacgc cgggccgctg
     5221 tactgtggca acatcaggaa aatgaaagag agcgttttac agcctggctg caagccgata
     5281 atgcgtaatc cggcacgcag cacatttgcc gtggaagaga ggttgcctgc gatacagaca
     5341 tccgctttac cggcgctgac cattgctgcg gcgaacatca gagggtcggt aagtttttcc
     5401 agcgcatccg gcggcgtttt ttcgcccgcg cgggccagcc agcgatgagc aaattcttcc
     5461 cgcattgcga ggttgccatg cggatcaatc acctgtagcc cgtccatcgc cacgccgtga
     5521 ctgagcgcaa actgacgaag ttcaaacgga ttggcgacca gaatgggcgt tgccagacct
     5581 tgttgatgta aatattgcgc ggctttcagc acacgttgat ctaacgcatc cggaaaaacc
     5641 actctggcgg gcgctcgcaa cgccagttca cgacaacgtt caataatcat tgcgttcccc
     5701 cagtcgttgt tggatctgct tcaccgttag cggctgcttc gttacgctca ggatcatcat
     5761 cacgtagacc gtgctggaaa ggcggttcag cgcctgcaaa atgtccgggc gtaatacttc
     5821 aaagctgcgg gtgataaaga cctgcgccgc tacggtttcg gtttcccgca ctttggtgcg
     5881 tagcagattg agcaacgcag catcgcgccc gtggctggct tccagcacca gatgatcgtg
     5941 gtcgagatag cgcagcggct gatgagaaag ccgatgcaga tcttcgtcag aaagcccgac
     6001 aatcgcctgg cagcccagcg gttcccccag cgcatcggcg cgcataatgt tgccaagacg
     6061 cgaacggata tccgccagcc acggctgcca cggttccgcc agttcaattt gcagccacac
     6121 tgccagcgca atggtgctgt cgagaaccgc gcgaaaaccc agacgcggat cgcttttggc
     6181 gaccattttt tccgccgaca ggtgagtcag cgtatccggc ttttttgcca ccggctggcg
     6241 gcacagttcg cagcacgcct gcggatgttc atcgctactg gtcagcccat gaacgggctg
     6301 cggcttctgc tgttcatcgt caacaaacag gcggccctgc tcgtcaataa acttgatgcg
     6361 cagatggcgg ctttccagca actcccgggc agagggcgtc aggcgactgt ccgcagggag
     6421 atggatctct gcgccttcgc tgagcgtatg gttcgctctt agccatgctt cggtgatgaa
     6481 atctttcata gggattgcca gttagccggc caggcgacat acaggaattt cacgctggat
     6541 gtcataccaa attcgatgct ggagcctttc gggataaaca tcacgtcgcc tgctttggcg
     6601 atcatggttt ggccttcgtg gcgaacatgc agcacccctt ccagcaccat gtcgatttcg
     6661 tcgtagttca gggtccacgg gaagaatgcg ttctcccact gcataaaacc ggcggccatg
     6721 ctgctgccgt cgtctccggt cacaagatca gtcaagccca cgcaatgcgg ctctgcgccg
     6781 tcgaaacgac caaacttgac gctgctgcca tcaatcactt tgatgccgcc tttgccggtc
     6841 accgatttga agctcggctg cattgcgccc tgctccagcg actgtttttc cttcatcact
     6901 ttttccatca gctgtgcgac caggctttcg gtaaactggc cttccggcag ctgggcaatg
     6961 atggtttcgc ggatgcgctg gctttcggtt ttgtcggctg gcacgctggc gggcacggac
     7021 gccgttaccg ggatcgattc atcacattcg gtgatggtaa aacccagtag atccgccact
     7081 tcacgggctt ccggggtaat aatgctggcg cgcagaacca cggacattgc ctgttcgccg
     7141 cgcgcgtgtg cttcacgaat atcattcgct gtgatgagtt ttttcacctg cttcctcctg
     7201 tttggtgaga gatgccagat aatccaccag ttgctgcacg ctttgcgggt cgtggctgtt
     7261 tagctcgaaa atcggctctt cgaaacccgt ctcaagcaat aactttcgcg ttgcggcgac
     7321 gtcagcatct ggcatgtccg ttttactgat gacggcaatt tgccgtttgc tgacgccaat
     7381 atccagcaac ccggcaggca accgactttc cgggtcattt gcgccatgga catagatcag
     7441 catgtctaca tcctgtagcg tggtaattaa ggcgtgatac cagcggggat ggctaaaata
     7501 ttcacccggc gtatcaatat cgcccttatc attaaattcc acggcctgtg tttttctggc
     7561 gagggtataa ttcccctgca acgcattaaa taacgttgtt tttcctgccc cgacactacc
     7621 cacaaacgca attcgtttca tgaatgcctc gtattaactt ttggtcattt cacaaagcgt
     7681 ataatttaat aagcgaccta aaccgctgac ggtttgtgat aacgcttctt ctactgcgcc
     7741 caccgagcca taaatcacca atgcaccgct gaagcggtcg agaaaaccga tatgcacatc
     7801 agcggctttc agcgctaaat caccggcgat catcgccgtt tcgccgggag ttagcgtcat
     7861 aatgccaatt gcgcccgcat ccggaacgcc gattttcttc gccagttcct caccgggatg
     7921 cgagatgaga tgcgccagtg tgacctgttt gccgggcaca aattcctgaa tgatgcgttc
     7981 tttatccatg agtcgccgcc tgtgaaaaac tttcgtgtat cgtgacaatt tttcgtcaga
     8041 gtaaataaca aaattcggca agcgcgttta aaaggtgagg tagatcacta agaatggaga
     8101 gatattcgct gtggtgcata aactttcata tgcaacgcat gaatataaat aaaataatat
     8161 cgagatatta tatagactgc ttttttatta ttcgcaaact cagtaataag ctttactaat
     8221 atattgcagc caaaccgctt accctgaata ttcagggtaa gcgtgagagt taaaaaagaa
     8281 ttacagcggt tgggtttgcg cttcaaccac ggccagcgcc accatgttga cgatacgacg
     8341 caccgatgcg atcggcgtta acacgtgaac cggtttcgcc acgcccatca gcaccggacc
     8401 gacagtcaca ccttccgagc tggaaacgcg cagtaagttg taactaatgc gggcagcttc
     8461 catgttcggc atcaccagaa tattggcaga acctttcaaa gggctgtccg gcatacggtc
     8521 gttgcgaatc gcttccacca gcgctgcatc gccgtgcatt tcaccatcaa tcatcagatc
     8581 tggcgcacga tccctgacca gttccagcgc ctgacgcatt ttgctcgacg acgggcagtc
     8641 agaagaacca aagttggagt gcgacaacag agcaacgcgc ggctcaatac caaaacgacg
     8701 gacagtttct gccgccatca aggtgatctc cgccagctct tctgcgtctg gttcgtcatt
     8761 gacgtaggta tcggcaataa aggtgttacc actcggcagc agcagcgcgt tcattgcacc
     8821 tgcggtgtga acgccatcgc gataaccaaa gacatttttc accacgctaa aatgttcatg
     8881 ataatcgccc accgtaccgc agatcattgc atcggcttcc ccacgctgaa ccatgatcgc
     8941 gccgatcact gtcgggttac tgatcagcgc ccgctgcgcc tgttcctgag tgacaccgcg
     9001 acgcttcatg atctggaagt attcggtcca gtactcttta aagcgcggat cggattcgtt
     9061 attgacgatc tcaaaatcaa cgcccgcttt gatctgcaag cccagtttct gaatgcgcat
     9121 ttcgatcacg ttcggacgac cgataaggat cggtttcgcc agtcccagcg ttaccagttc
     9181 ctgagtggca tgcagaacgc gcgcctcttc cccttctggc agaacaacgc gcttcggcgc
     9241 tttgcgagcc tgggagaaaa tcggcttcat aaacaggttg gttttgtaaa cgaactcagt
     9301 cagcttgtcg atgtagacgt cgaaatcagc aatcggacgc gtcgccacgc ccgactccat
     9361 cgcggcttta gcgaccgcag gagcgatctt aacgatcaag cgcggatcaa acggttttgg
     9421 aatgatgtat tccggaccaa agctcagatc ctgatcgcca tacgctgaag ccaccacttc
     9481 gctctgttcc gcatgggcga gttctgcaat cgcacgtacc gccgccagtt tcatctcttc
     9541 gttgatggcg gttgcgccaa cgtccagcgc gccacggaag atgaacggga agcacaggac
     9601 gttgttcacc tggttcggat agtcagaacg accggtgcaa atgatggcat ccggacgcac
     9661 ttctttcgcc agcggcggca gaatttccgg ttccgggttc gccagcgcca ggatcattgg
     9721 cgcacgagcc attttcttca ccatttcctg ggtcagcact ttcgggccgg aacatccgag
     9781 gaaaatatcc gcgccttcaa tcacatcatc gagggtacgt ttgccgtcgt ccaccaccgc
     9841 atatgcggct ttggtttccg ccatgtttgg ctcacggccc tgatagataa cgccttttga
     9901 atcgcaaacc acgatgttat gtttttgcag acccagcgct accagcaggt tcatacaggc
     9961 gattgctgcg gcacccgcgc cggaaaccac catccgcacg tcggagatgt ttttctccac
    10021 cacgcgcaag ccgttgagga tggcggcagt gctgatgatt gccgtgccgt gctgatcgtc
    10081 gtggaatacc ggaatattca tccgctcgcg cagtttctgt tcaatataga aacattctgg
    10141 cgctttaatg tcttcgaggt tgattccgcc gaaggtcggt tcgagcgcag cgacaacttc
    10201 aataaatttg tccgggtcga gttcatcaac ttcaatgtca aatacatcaa tcccggcgaa
    10261 tttcttaaac agaacgccct tgccttccat caccggtttg ccagccagcg cgccaatgtt
    10321 gcctaacccc agcaccgccg taccgttaga gatcaccgcc accaggttac cgcgcgcggt
    10381 atatttgtag gcttttaacg ggtctttttc gatttcaaga caaggtgcgg caacgcctgg
    10441 tgagtaggcc agcgccagat cgcgctgcgt tgccagaggc ttggttggag aaacctggat
    10501 tttccctgga actggaaatt catggaaatc aagtgcactt tgttttaact ggtcatccat
    10561 ttggttgttc ctttcacgta acgttcacaa ataaagtgtg tgggcaacag cccctgccca
    10621 caacgtggcg cacattatta ccccgccgga gtctacagac tttgagcaag tccaaactct
    10681 caccattaat ataatgtttt ggtaataatc ctataacact gatgttacct gcttaatcca
    10741 gcaataccat gcctgtctgc tatgcttttt tgatgcgttt agcgaaattt ctcagaagtg
    10801 tgaattaacg cactcatcta acactttact tttcaaggag tatttcctat gaacgagtta
    10861 gacggcatca aacagttcac cactgtcgtg gcagacagcg gcgatattga gtccattcgc
    10921 cattatcatc cccaggatgc caccaccaat ccttcgctgt tgctcaaggc tgccggatta
    10981 tcacaatatg agcatttaat agacgatgct atcgcctggg gtaaaaaaaa tggcaagacc
    11041 caggaacaac aggtggtcgc agcgtgtgac aaactggcgg tcaatttcgg tgctgaaatt
    11101 ctcaaaatcg tacccggtcg cgtgtcaaca gaagttgatg cacgcctctc ttttgataaa
    11161 gaaaagagta ttgagaaggc gcgccatctg gtggacttgt atcagcaaca aggcgttgag
    11221 aaatcacgca ttctgatcaa actggcttcg acctgggaag gaattagcgc ggcagaagag
    11281 ctggaaaaag aaggtattaa ctgcaacctg acgctgctgt tttcttttgc ccaggcgcgg
    11341 gcctgtgcgg aagcaggcgt ttttctgatt tcgccgtttg tcgggcgtat ttatgactgg
    11401 tatcaggcac gcaagccgat ggacccgtat gtggtggaag aagatccggg cgttaaatcg
    11461 gtgcgcaata tctacgacta ctataagcaa caccactatg aaaccattgt gatgggcgcg
    11521 agcttccgtc gcaccgaaca aatcctcgcc ttaaccggct gcgatcgact gactatcgca
    11581 ccgaatttgc tgaaggagct gcaggaaaaa gtttcgccag tggtacgtaa attaatccca
    11641 ccttctcaga cgttcccacg cccagctccc atgagcgaag cggagttccg ttgggagcac
    11701 aatcaggatg cgatggcggt agaaaaactg tctgaaggca ttcgtctgtt cgccgttgat
    11761 caacgcaaac tggaagatct tcttgccgcc aaactataaa ccagccacgg agtgttatat
    11821 gtcccgaaaa gaccttgcca atgcgattcg cgcactcagt atggatgcgg tacaaaaagc
    11881 caactctggt catcccggcg cgccgatggg catggctgat attgccgaag tgctgtggaa
    11941 cgattttctt aaacataacc ctaccgaccc aaccgggtat gatcgcgacc gctttattct
    12001 ttccaacggt cacgcgtcga tgctgctcta cagtttgctg catctgaccg gttacgacct
    12061 gccgctggaa gagctgaaga acttccgtca gttgcattcg aaaaccccag gccacccgga
    12121 gattggttat acgcccggtg ttgaaaccac caccggtcca cttggacaag gtttggcgaa
    12181 cgccgtcgga ctggcgatag cagagcgtac actggcggcg cagtttaatc agccggatca
    12241 tgaaattgtc gatcacttca cctatgtgtt tatgggcgac ggctgcctga tggaaggtat
    12301 ttcccacgaa gtctgttcgc tggcgggcac gctaggactg ggcaagctga ttggttttta
    12361 cgatcacaac ggtatttcga ttgatggaga aaccgaaggc tggtttaccg acgatacggc
    12421 aaaacgtttt gaagcctatc actggcatgt gatccatgaa atcgacggtc acgatccgca
    12481 ggcggtgaag gaagcgatcc ttgaagcgca aagcgtgaaa gataagccgt cgctgattat
    12541 ctgccgtacg gtgattggct ttggttcgcc gaataaagca ggtaaggaag aggcgcacgg
    12601 cgcaccactg ggggaagaag aagtggcgct ggcacggcaa aaactgggct ggcaccatcc
    12661 gccatttgag atccctaaag agatttatca cgcctgggat gcccgtgaaa aaggcgaaaa
    12721 agcgcagcag agctggaatg agaagtttgc cgcctataaa aaggctcatc cgcaactggc
    12781 agaagagttt acccgacgga tgagcggtga tttaccgaag gactgggaga aaacgactca
    12841 gaaatatatc aatgagttac aggcaaatcc ggcgaaaatc gctacccgta aggcttcgca
//
LOCUS       DAJVUP010000123        12856 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.123, whole genome shotgun sequence.
ACCESSION   DAJVUP010000123 DAJVUP010000000
VERSION     DAJVUP010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12856
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.123"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1630
                     /locus_tag="OQQ75_003077"
     CDS             <1..1630
                     /locus_tag="OQQ75_003077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001299181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS1977318.1"
                     /translation="SLLFQPTDSAAEDFMKSHVEPTIRDVPALLELAPWFGRKHRDNT
                     LTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIE
                     GSVWPKSIRGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDASPFGL
                     KWEKNKPESVFYLCEHHGCVIHQSELDQSNGRWICENTGMWTRDGLTFFSAADNEIPP
                     PRSITFHIWTAYSPFTTWVQIVYDWLDALKDPNGLKTFVNTTLGETWEEAVGEKLDHQ
                     VLMDKVVRYTAAVPSRVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDE
                     EETLLRVDVAINKKYRHADGTEMTISRVCWDTGGIDGEIVYQRSKKHGVFRVLPVKGA
                     SVYGKPVITMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPADEATSYAIRFPDDP
                     EIFSQTEAQQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQL
                     DLAVLAKSREEETTRPTLKELAAKLSGGVNGYSR"
     gene            1614..1820
                     /locus_tag="OQQ75_003078"
     CDS             1614..1820
                     /locus_tag="OQQ75_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977319.1"
                     /translation="MVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLDELN
                     RAINDAESVLGTTRRRRRPLGVRL"
     gene            1817..3409
                     /locus_tag="OQQ75_003079"
     CDS             1817..3409
                     /locus_tag="OQQ75_003079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1977320.1"
                     /translation="MKRTPVLIDVNGVPLRESLSYTGGGAGFGGQMAEWLPPSQSADA
                     ALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRPNWRWLGMRETAAK
                     SFVDEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTESTQ
                     LFRTRFKAVSPKRVDTPGHGIGNRFLRAGVEVDRYGRAVAYHICEDDFPRSGSGRWER
                     IPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDSLQATQLQSAIVKAMYA
                     ATIESDLDTEKAFEYIAGAPQGQKDNPLINILDKFSTWYDTNSVTLGGVKIPHLFPGD
                     DLKLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRY
                     FMGRRKFIASRLATQMFSCWLEEALLRGIIRPPRARFDFYQARSAWSRAEWIGAGRMA
                     IDGLKEVQESVMRIEAGLSTYEKELALMGEDYQDIFRQQVRESAEREKAGLSRPVWIA
                     QAYQQQIAESRRPEEETTPRET"
     gene            3399..4904
                     /locus_tag="OQQ75_003080"
     CDS             3399..4904
                     /locus_tag="OQQ75_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HCS1977321.1"
                     /translation="MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQ
                     QQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTG
                     YDGIVACLQQAMADSQVRGILLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTA
                     CSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGN
                     QFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVDAVTGTEAAVFEGQSGIEAGLA
                     DELINASDAISVMATALNSNVRGGTMPQLTATEAAVQENQRVMGILTCQEAKGREQLA
                     TMLAGQQGMSVEQARAILAAAAPQQPVASAQSEADRIMACEEANGREQLAATLAAMPE
                     MTVEKARPILAAAPLADAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLA
                     AGSGKAEPVSASTTALFEHFMANHSPAAVRGGVSQTSADGDADVKMLMAMP"
     gene            4941..5288
                     /locus_tag="OQQ75_003081"
     CDS             4941..5288
                     /locus_tag="OQQ75_003081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS1977322.1"
                     /translation="MVTKTITEQRAEVRIFAGNDPAHTATGSSGISSATPALTPLMLD
                     EATGKLVVWDGQKAGSAVGILVLPLEGTETVLTYYKSGTFATEAIRWPDSVDEHKKAN
                     AFAGTALSHTALP"
     gene            5346..6374
                     /locus_tag="OQQ75_003082"
     CDS             5346..6374
                     /locus_tag="OQQ75_003082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HCS1977323.1"
                     /translation="MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDRI
                     TGKTPVAAYVSPIVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLN
                     DPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGDQFDTVEVDFGRSEGN
                     NIEQADGKKWSEQDRDTFDPTHDIDLYCDQASGLVNIAIMDGTVWRLLNGFKLFREKL
                     DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPEGMLVLG
                     NTAAEGIRCYGAIKDAQALSEGVVASSRYPKHWLTVGDPSCEFTMTQSAPLMVLPDPD
                     EFVVVQVK"
     gene            6426..6809
                     /locus_tag="OQQ75_003083"
     CDS             6426..6809
                     /locus_tag="OQQ75_003083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-packaging protein FI"
                     /protein_id="HCS1977324.1"
                     /translation="MATKEENLNRLRQLAGLLGREADMSGSAADIAQRVSEWEEELAV
                     SPEGIMHSDESGADQNHTDDGEQLNNTDAPDDVKAVRVRKCLQVMGYCPETGRPVELA
                     LRGMRVLVPSSLATAMIQHGTAEYA"
     gene            6802..7155
                     /locus_tag="OQQ75_003084"
     CDS             6802..7155
                     /locus_tag="OQQ75_003084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977325.1"
                     /translation="MRDFQNAFDAALAGVDSTIVEVMGLCAQFTSGAQCGSEVQGVFD
                     DPESLGFAGGGVRIEGSSPSLFVRTDTVRAVRRGDTLTINGEIFWVDRVSPDDGGSCY
                     LWLNRGQPPAVNRRR"
     gene            7171..7704
                     /locus_tag="OQQ75_003085"
     CDS             7171..7704
                     /locus_tag="OQQ75_003085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977326.1"
                     /translation="MAIKGLDQAIDNLSRVRKNAIPAASAMAINRVATTAINQSSSQV
                     ARETKVRRKLVKERSRLKRATVRNPNARIIVNRGDLPVIKLGIRMLGRRPNSILKAGQ
                     HRYQRAFIQRLKNGRWHVMQRVAGKNRYPIDVVKIPMAAPLKQAFDENVDRIRRERLP
                     KELAYALKQQLRIAIKR"
     gene            7701..8096
                     /locus_tag="OQQ75_003086"
     CDS             7701..8096
                     /locus_tag="OQQ75_003086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977327.1"
                     /translation="MKHTDIRAAVLDALEQHEHGATLFDGRPVVFDEEDFPAIAVYLT
                     DAEYTGEELDADTWRATLHIEVFLPAQVPDSELDQWMESRIYPAMTAIPALAGLITTM
                     VTQGYEYRRDDDMALWSSADLTYSITYEM"
     gene            8104..8856
                     /locus_tag="OQQ75_003087"
     CDS             8104..8856
                     /locus_tag="OQQ75_003087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977328.1"
                     /translation="MATPNPLEPVKGAGTTLWVYNGKGDAYANPLSDDDWQRLAKVKD
                     LTPGEMTAESYDDNYLDDEDADWTATGQGQKSAGDTSFTLAWKPGEEGQKGLIGWFES
                     GDVRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGKPSVAEERSKITP
                     VSAIKVTPTSGTVAKGKTTTLTVSFEPESATDKTFRAVSADPSKATISVKDMTITVNG
                     VATGKVQIPVVSGNGQFAAVAEVTVTEAGAAG"
     gene            8870..9301
                     /locus_tag="OQQ75_003088"
     CDS             8870..9301
                     /locus_tag="OQQ75_003088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS1977329.1"
                     /translation="MFLKTEQFEYNGVSVTLSELSALQRIEHLALLKRRAEQAESCGN
                     LQVSVEDLVRTGAFLVAMSLWHNHPQKTQSPSMNEAVMKIEQEVLTTWPADAIARAED
                     VVLCLSGMIEAVRPDTDITEVAKNNTLTDDDFSAGKSSTAS"
     gene            9328..9741
                     /locus_tag="OQQ75_003089"
     CDS             9328..9741
                     /locus_tag="OQQ75_003089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
                     /protein_id="HCS1977330.1"
                     /translation="MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTY
                     AVLSLFFCDPDMHPSDFSLLVSRHEEEQVERPDEDKMLMQKAAGLAGGVRFGGDGGRD
                     ILSSADVADVMVDDAALMMASAGIPGGVRYVPAGW"
     gene            9722..12295
                     /locus_tag="OQQ75_003090"
     CDS             9722..12295
                     /locus_tag="OQQ75_003090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1977331.1"
                     /translation="MSQPVGDLVIDLSLDAVRFDEQMSRVRRHFSGLDTDARKTASAV
                     EQGLSRQALAAQKAGISVGQYKAAMRTLPAQFTDIATQLAGGQNPWLILLQQGGQVKD
                     SFGGMIPMFRGLAGAITLPMVGVTSLAVATGALVYAWYQGDSTLSAFNKTLVLSGNQS
                     GLTADRMLTLSRAGQAAGLTFNQARESLAALVNAGVRGGEQFDAINQSVARFASASGV
                     EVDKVAEAFGKLTTDPTSGLMAMARQFRNVTAEQIAYVAQLQRSGDEAGALQAANDIA
                     TKGFDEQTRRLKENMGTLETWADKTGKAFKSMWDAILDIGRPESSADMLASAQKAFDE
                     ADKKWQWYQSRSQRRGKTSSFRANLQGAWDDRENARLGLAAATLQSDMEKAGELAARD
                     RAEREASQLKYTGEAQKAYERLQTPLDKYTARQKELNKALKDGKILQADYNTLMASAK
                     KDYESTLKKPSGVKVSAGERQEDRAHAAMLALETELRTLEKHSGVNEKISQQRRDLWE
                     AENQYVVLKEAATKRQLSEQEKSLLAHEKETLEYKRQLAELGDKIEHQKRLNELAQQA
                     ARFEQQQSAKQAAISAKARGLTDRQAQRESEEQRLREVYGDNPAALAKATSALKNTWS
                     AEEQLRGSWMAGMKSGWGEWAESATDSFSQVKNAATQTFDGIAQNMAAMLTGSEQNWR
                     GFTRSVLSMLTEIFLKQAMVGIVGSIGSAIGGAFGGGASASTGTAIQAAAANFHFATG
                     GFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYATGGYVGGTGSPAQMR
                     RSEGIRFEQNNNVVIQNDGTNGLPGPQMLKAVYDMARKGARDEIQAQMRDGGLFSGGG
                     R"
     gene            12292..12621
                     /locus_tag="OQQ75_003091"
     CDS             12292..12621
                     /locus_tag="OQQ75_003091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1977332.1"
                     /translation="MKTFHWKVKPGMDVASAPSVRKVRFGDGYSQRAPAGLNADLKTY
                     SVTLSVPRWEATALESFLAEHGGWKSFLWTPPYEWRQIKVTCAKWSSRVSMLRVEFSA
                     EFEQVVN"
     gene            12621..>12856
                     /locus_tag="OQQ75_003092"
     CDS             12621..>12856
                     /locus_tag="OQQ75_003092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1977333.1"
                     /translation="MQDIRQETLNECTRAEQSASVVLWEIDLTEVGGERYFFCNEQNE
                     KGEPVTWQGRQYQPYPIQGSGFELNGKGTSTRPTL"
BASE COUNT         2941 a         3061 c         4129 g         2725 t
ORIGIN      
        1 cagccttctt tttcagccca cggactcagc tgctgaagat tttatgaaat ctcatgttga
       61 gccaacgata agggatgttc ctgcattgct ggagctggct ccatggttcg gaagaaaaca
      121 ccgcgataat acgctcaccc tgaagcgttt ttcctccggt gtgggtttct ggtgtctggg
      181 gggagcggca gcaaaaaact accgtgaaaa atccgtggat gtggtttgtt atgacgagct
      241 ttcctcgttc gaaccggatg ttgaaaaaga gggttcgcca accctgctgg gggataaacg
      301 tattgagggc tctgtatggc caaaatccat tcgcggctcg acgcctaaaa tcaaaggctc
      361 ctgccagatc gaaaaagccg ctaacgagtc ggcacatttc atgcgttttt atgtgccctg
      421 tccgcactgt ggggaggagc agtatctgaa atttggcgat gatgcctcgc ctttcggtct
      481 taagtgggag aagaataagc cagaaagtgt tttctacctt tgtgagcatc atggctgtgt
      541 gatccatcag tctgagcttg accagagtaa cgggcggtgg atctgtgaaa acacgggcat
      601 gtggactcgt gacggtctga catttttcag cgccgcggat aatgaaattc cgccgccgcg
      661 ctccatcaca ttccatatct ggacggcgta cagtccgttc accacctggg tacagattgt
      721 ctatgactgg ctggatgcac tgaaagatcc caacggcctg aaaacctttg tgaacaccac
      781 gctgggcgag acctgggaag aggccgtggg cgaaaaactc gatcaccagg tgctgatgga
      841 taaggttgtg cgttacacgg ctgcggtgcc ttcccgggtg gtttatctga cggcgggcat
      901 tgactcgcag cgaaaccgtt ttgagatgta tgtctgggga tgggctccgg gagaggaagc
      961 ctttctggtg gataaaatca tcattatggg gcgtcccgat gaggaagaga cgctgttacg
     1021 tgtggatgtg gcgatcaaca aaaaataccg ccatgcagac ggaaccgaaa tgaccatttc
     1081 ccgtgtctgc tgggacaccg gggggatcga tggcgaaatt gtctatcaga ggtcaaaaaa
     1141 acacggtgtt ttccgggtgc tgccggtaaa aggtgcatct gtttatggca agccggtgat
     1201 caccatgcca aaaacccgca atcagcgggg cgtgtatctg tgcgaagtgg ggacggacac
     1261 cgcaaaagaa attctctatg cccgtatgaa agccgatccc acgcctgcgg atgaagccac
     1321 gtcgtatgcc atccgttttc ctgatgatcc ggagattttt tcgcagacag aggcgcagca
     1381 actggtggcg gaagagcttg tggagaagtg ggaaaaagga aagatgcgtc tgctgtggga
     1441 taacaaaaag cggcgtaacg aagcgctgga ctgcctggtg tatgcctacg cggcattacg
     1501 tgtgtccgtg caacgctggc agcttgatct ggctgtactg gcaaaatccc gggaagaaga
     1561 gacgacccgg ccaaccctta aagaactggc agcgaagctg tccggaggag tgaatggtta
     1621 cagtcgctga actgcaggcg ctgcgtcagg cgcgccttga tttattaacc ggtaaacggg
     1681 tggtgtctgt ccagaaagat ggtcgcagaa ttgaatatac ggcagcttct ctggatgagc
     1741 ttaaccgggc gatcaatgat gcggagtcgg tactggggac aacccgccgt cgccgtcgtc
     1801 cgctgggagt gaggttatga aacgaacgcc tgtcctgatt gatgtgaacg gcgttccgct
     1861 tcgggagagc ctcagctaca ccggtggcgg tgcaggattt ggcgggcaaa tggcagagtg
     1921 gttgccaccc tcgcagagtg ccgatgcggc cctgctgccc gcgttgcgtc tggggaatgc
     1981 ccgtgcagat gatctggtgc gcaataacgg aatagcggcc aatgcggtgg ccctgcataa
     2041 ggatcacatt gtcgggcata tgtttctgat tagctaccgt ccgaactggc gctggctggg
     2101 gatgcgggag accgcggcaa aaagttttgt cgatgaggtg gaggcggcct ggtcagaata
     2161 cgcagaaggg atgtttggtg agatcgacgt ggaagggaaa cgcacgttta cggaatttat
     2221 ccgtgaaggt gtgggcgttc atgcgtttaa cggcgaaatc tttgtgcagc cggtctggga
     2281 tacggagagt acgcaactgt ttcgtacgcg ttttaaagcc gtgagtccga aacgggtgga
     2341 cacgccagga cacggtatcg ggaaccgttt tctgcgggcc ggtgtggagg ttgatcgata
     2401 tggccgtgcc gttgcgtacc atatctgtga ggatgatttt cctcgctccg ggagtggacg
     2461 atgggaacgg atcccgcgtg aactacccac cgggcgtccg gccatgctgc atattttcga
     2521 gccggtggag gacgggcaga cccgtggagc caatcagttt tacagcgtta tggaacggct
     2581 gaagatgctg gattccctgc aggcaacaca gcttcagtcg gccatagtga aggcgatgta
     2641 tgcagcgacg attgaaagtg accttgatac cgaaaaggcc tttgaatata tcgccggtgc
     2701 gccgcagggg cagaaggata atccgcttat taatattctg gataagttct ccacctggta
     2761 tgacacgaat agcgtgacgc tgggcggtgt caaaattccg caccttttcc ccggtgatga
     2821 tctgaaactt cagaccgcgc aggattcaga caatggattt tcggcgcttg aacaggcgct
     2881 gctgcggtat atcgccgccg gtcttggcgt ttcctacgaa cagttgtccc gtgattactc
     2941 gaaggtcagt tactcaagtg cccgcgcatc cgccaatgag tcgtggcgct attttatggg
     3001 gcggcgaaaa tttattgcgt cccggctggc cacgcagatg ttttcctgct ggctggaaga
     3061 ggcacttctt cgggggatta ttcgtccgcc acgggcacgg tttgattttt atcaggcgcg
     3121 atcagcctgg tcacgggctg agtggattgg agccggaaga atggccattg acgggctcaa
     3181 ggaggttcag gaatcagtga tgcgcattga ggccggactg agcacgtatg agaaagagct
     3241 ggcgctgatg ggcgaggatt atcaggacat tttccgccag caggtcaggg aatctgcaga
     3301 gcgggaaaaa gccggactct cacgtccggt gtggatagcg caggcgtatc agcagcagat
     3361 agcggagagt cgcaggccgg aagaggagac aacaccacgt gagacgtaat ctttcacaca
     3421 ttattgcagc agcattcaat gaaccgctgc ttctggagcc cgcctatgcg cgggttttct
     3481 tttgcgcgct ggggcgcgag atgggggcag caagtctttc ggtaccgcaa cagcaggtac
     3541 agcttgatgc tcccgggatg ctggctgaaa cggacgagta catggccgga ggtaaacgac
     3601 cggcccgtgt ttaccgggtg gtgaacggta ttgcggtact gccggtgacc ggcacgctgg
     3661 tgcaccggct gggggggatg cggccatttt ccggaatgac tggctatgac ggcattgtcg
     3721 cctgtcttca gcaggcaatg gcagatagcc aggtgcgggg catactgctg gacattgaca
     3781 gtccgggcgg gcaggccgcc ggcgcgtttg actgcgctga catgatttac cgcctccggc
     3841 agcagaagcc ggtttgggca ctgtgtaatg acacggcctg ttctgcggcc atgctgctgg
     3901 cgtcggcctg ctcccgacgg ctggttaccc agacatcccg tatcggttcc attggcgtga
     3961 tgatgagcca tgtcagctat gccggtcatc tggcgcaggc cggtgtggat atcacgctga
     4021 tttactcagg ggcgcacaag gtggatggca atcagtttga agcgttgccg gcagaggttc
     4081 gccaggacat gcagcagcgg attgatgcgg cgcgccggat gtttgccgaa aaagtggcga
     4141 tgtttaccgg tctgtctgtt gatgcagtca cgggaacaga ggccgctgtt tttgaaggtc
     4201 agtccggcat tgaggccggg ctggcggatg aattaatcaa tgcgtcggat gccatcagtg
     4261 tgatggccac ggcgctgaac agtaatgtca gaggaggcac tatgccgcaa ttaactgcaa
     4321 cggaagccgc cgtgcaggag aaccagcgag tgatggggat cctgacatgc caggaagcga
     4381 aaggacgtga acagcttgcc acgatgctgg cagggcaaca gggcatgagc gttgaacagg
     4441 cccgggcgat tctggccgcg gcggcaccgc agcagccggt ggcatccgcg cagagtgaag
     4501 ccgatcgcat tatggcgtgt gaagaagcga acggtcgtga acaactggcg gcaacgctgg
     4561 cggcgatgcc ggagatgacg gtggaaaaag cccgcccgat cctggcggct gcaccactgg
     4621 cggatgccgg gccctcactt cgtgatcaga tcatggccct ggatgaggca aaaggggcag
     4681 aagcgcaggc tgaaaaactg gcggcctgcc cgggaatgac cgtggagaac gcccgggctg
     4741 tgctggctgc gggatcaggt aaggccgaac cggtctctgc atccacaacc gccctgtttg
     4801 aacatttcat ggcgaatcat tcaccggcag cggtgcgggg tggcgtgtca cagacgtcag
     4861 cagacggtga tgcggacgtg aaaatgctca tggccatgcc atgaagtcag tgctgaccat
     4921 caatatgagg ttttaacaaa atggtgacga aaaccatcac tgaacagcgt gcggaagtac
     4981 gtatttttgc cggtaatgat ccggctcata ccgccacagg cagcagcggg atttcttctg
     5041 caacaccggc tctgacgccc ctgatgctgg atgaagccac cgggaaactg gtggtctggg
     5101 atggacagaa agccggtagt gcggttggca tactggtact gccgcttgaa ggcacagaga
     5161 cggtgctgac ctattacaag tcggggacct ttgcgacgga ggcaatccgc tggcctgaca
     5221 gtgtggatga acacaaaaag gcaaatgcct ttgccggcac agccctgagt cacacggctc
     5281 tgccgtaaca cgttatcagg ccaccatggc ggcctgactg atttctgaat gaaaggaact
     5341 gatttatggg attgtttacg acccgccagt tactcggtta taccgaacaa aaagtgaaat
     5401 ttcgtgcgct gtttctggag ctgtttttcc gccgtacggt gaatttccac accgaagagg
     5461 tgatgctgga cagaattacc ggaaaaacgc cggtggcggc ctatgtctcc ccgatcgttg
     5521 aaggaaaagt gcttcgccat cgcggtggtg aaacccgcgt gttacgtccg ggctacgtca
     5581 agcccaaaca cgaatttaat taccagcagg cggttgagcg ccttcctggt gaagatccgg
     5641 ctcagctgaa cgacccggcc taccgtcgtc tgcgtatcat taccgataac ctcaaacagg
     5701 aagagcacgc cattgtccag gtggaagaaa tgcaggcggt gaatgccgtg ctgtatggca
     5761 aatacaccat ggaaggggat cagtttgata ctgtcgaggt ggatttcggg cgctctgaag
     5821 gaaataacat tgagcaggct gacggtaaaa aatggtctga gcaggaccgt gatacgtttg
     5881 atccgacgca tgatattgac ctctactgcg atcaggccag cggccttgtg aatatcgcca
     5941 ttatggacgg tacggtctgg cgtctgctga atggctttaa gctgttccgc gaaaaactgg
     6001 atacccgtcg cggctcaaat tcacaactcg aaacggcagt gaaagatctg ggcgcagtgg
     6061 tgtccttcaa ggggtattac ggcgatctgg ccattgtggt ggcgaaaacg tcttatgtgg
     6121 cagaggacgg taccgaaaaa cgttatctgc cggagggcat gctggtgctg gggaatacgg
     6181 cggcagaggg gattcgttgc tatggtgcca ttaaggatgc acaggcgttg tctgaaggag
     6241 tggtggcttc ttcccgttac ccgaaacact ggctgaccgt gggcgatccg tcctgtgaat
     6301 tcaccatgac gcagtccgct ccgctgatgg tgctgccgga tccggatgag tttgtggtgg
     6361 tacaggtgaa ataatccgtg agcgggggcg aaatgccccc gtgtcttttt tcacaggagg
     6421 ctgagatggc aacaaaagaa gaaaatctga atcgtcttcg tcaactggct ggcctgctgg
     6481 ggcgcgaggc ggatatgtcg gggagtgctg cggatattgc tcaacgtgtg tctgagtggg
     6541 aagaggagct tgctgtttcc ccggagggca ttatgcactc tgatgagagc ggggctgatc
     6601 aaaatcacac agacgatggt gagcagttga acaacacgga tgctccggat gatgttaaag
     6661 ccgtccgggt acggaagtgc ctgcaagtaa tggggtattg cccggagaca ggtcgtcccg
     6721 ttgagctggc gttacggggt atgcgtgttc tggtgccatc atcactggca acggccatga
     6781 tacagcacgg aacggctgaa tatgcgtgat tttcagaatg cctttgatgc tgccctcgcc
     6841 ggggtagaca gtacgatcgt tgaagtgatg gggctctgtg cgcagttcac ctcgggggca
     6901 cagtgtggca gcgaagttca gggggttttt gatgatccgg agtcgctggg gtttgccggt
     6961 ggcggggtcc gtattgaagg aagcagcccg tcattatttg tgcggacgga tacggttcgt
     7021 gccgtgcggc gtggtgacac gctgaccatt aatggtgaga tattctgggt ggatcgtgtt
     7081 tctccggatg acgggggcag ctgttatctc tggctcaacc gtggtcaacc acccgcagtt
     7141 aaccggcgac gataaacgca gggtgaaatt atggcgataa aagggcttga tcaggcgatt
     7201 gacaatctga gccgggttcg taaaaacgcc attccggcgg cttcagcaat ggccattaac
     7261 cgcgtggcca caacggcgat taatcagtct tcatcacagg ttgcccggga gacaaaggtt
     7321 cgccggaaac tggttaagga acggtccaga ctgaaacggg cgacggtcag aaatccgaat
     7381 gccagaatta tcgttaaccg cggtgatctc cctgtgatta agctggggat caggatgctg
     7441 gggcgtcgcc cgaacagcat acttaaagcc ggtcagcatc ggtatcagcg ggcatttatt
     7501 cagcgattaa aaaatggtcg ctggcatgtc atgcagcgtg tggccgggaa aaaccgttac
     7561 cccattgatg tggtgaaaat cccgatggcg gccccactga aacaggcatt tgatgagaat
     7621 gttgaccgta tccggcgtga acgcctgcct aaagaactgg catacgcgct gaaacaacaa
     7681 ctgaggattg caataaaacg atgaaacaca ctgacattcg tgccgcagtg ctggatgcac
     7741 tcgagcagca tgaacacggg gcgacgctgt ttgatggtcg ccccgttgtt tttgacgaag
     7801 aggattttcc tgcgatcgcg gtttatctga cggatgcaga gtataccggt gaagagctgg
     7861 atgcagatac ctggcgggcc acgctgcata ttgaggtgtt tttaccggca caggtaccgg
     7921 attcagagct tgatcagtgg atggaaagcc ggatttaccc ggcgatgacc gcgatcccgg
     7981 cactggcagg actgattacc acgatggtta cgcagggcta tgagtatcgt cgtgatgacg
     8041 atatggcgtt atggagttct gcagatctga cttattccat tacatacgag atgtgaggac
     8101 gatatggcaa caccaaatcc ccttgagccg gtaaaaggtg ccggtaccac tctgtgggtt
     8161 tacaacggca agggtgatgc ttatgcaaac ccgttgtcag acgatgactg gcagcgactg
     8221 gctaaggtga aggatctgac gccgggcgag atgacggcag aatcctacga tgataactac
     8281 ctggatgatg aagacgcgga ctggaccgcg accgggcagg ggcagaaatc tgcaggtgat
     8341 accagtttta cgctggcctg gaaaccggga gaggaaggcc agaaagggct tataggctgg
     8401 tttgaaagcg gcgatgtccg ggcctataaa atccgttttc cgaatggcac ggtggatgtg
     8461 tttcgtggct gggtcagcag tatcggtaag gccgtgacgg cgaaagaagt gatcacccgc
     8521 acggtgaaag tcactaacgt gggtaaacct tctgtagcgg aagaacgcag caaaattacg
     8581 ccggtcagtg cgattaaggt gacgccgaca tccggtacgg tggcaaaagg gaaaacaacc
     8641 accctgacgg tttcttttga gccggaaagt gcaaccgaca agacgttcag agcggtttcc
     8701 gccgatccgt cgaaagccac cattagtgtg aaagatatga caattacggt aaacggcgtg
     8761 gcgacaggta aggtgcagat ccctgtggtg agcggaaatg gtcagttcgc cgcagtggct
     8821 gaagtcaccg ttactgaagc gggcgctgca gggtaaacgg aggtaataca tgtttctgaa
     8881 aacagaacaa tttgaatata acggtgtgtc tgtcacgctt tccgaattgt ctgcgctgca
     8941 gcgtatcgag catcttgccc tcctgaaacg gcgtgcagaa caggcagaat cctgcggcaa
     9001 cctgcaggta agcgtggaag atctcgtcag aaccggcgcg tttctggtgg cgatgtccct
     9061 gtggcataac catccacaga aaacgcagtc accgtcaatg aatgaggccg tgatgaagat
     9121 agagcaggaa gtgctcacca cctggcctgc cgatgccatt gcccgggcgg aagacgtggt
     9181 gttgtgcctg tccgggatga tcgaagctgt tcgtccggat actgatatta ctgaagtggc
     9241 gaaaaataac acgctgactg atgatgattt ttctgcggga aagtcttcga cggcgagctg
     9301 aactttgccc tcagactggc gcgtgagatg gggagacccg actggcgcgc catgcttgcc
     9361 gggatgacat ccaccgaata tgccgactgg caccgttttt accgcacgca ttattttcag
     9421 gatacccagc tggatatgca tttttccggg ctgacgtacg ctgtactcag cctgtttttt
     9481 tgcgatccgg atatgcatcc ctctgatttc agtctgcttg tctcccggca tgaggaagag
     9541 caggtggaga ggccggatga ggacaaaatg ctgatgcaga aagcggcagg acttgccgga
     9601 ggcgtccggt tcggtgggga cggagggcgc gatattttat cgtctgcgga tgtggcggat
     9661 gtcatggtgg atgatgccgc attaatgatg gcttcagcgg ggattccggg aggtgtgaga
     9721 tatgtcccag ccggttggtg atcttgttat tgacctgagt ctggatgctg tccgtttcga
     9781 tgagcagatg agccgggtaa ggcgtcattt ttcaggtctg gataccgacg ccagaaaaac
     9841 cgccagtgct gttgaacagg gcctgagccg ccaggcgctg gctgcacaaa aagccgggat
     9901 ttccgtcggg cagtataaag cggccatgcg aaccctgccc gcacagttta cggatatcgc
     9961 cacgcagctt gcaggtggtc agaatccctg gctgatcctg ctgcaacagg gcggtcaggt
    10021 gaaggactcc ttcggcggga tgatccccat gttcaggggg cttgccggtg cgatcaccct
    10081 gccgatggtc ggggtcacct cgctggcggt ggcgacaggt gcgctggtgt acgcctggta
    10141 ccagggagat tccacgcttt cagcgtttaa taaaaccctg gttctttccg gtaatcagtc
    10201 cggactgact gccgatcgta tgctgactct ctcaagagcc gggcaggcag cagggctgac
    10261 gtttaaccag gcgagagagt cactggcagc cctggtgaat gccggtgtgc gtggtggtga
    10321 acagtttgat gccatcaacc agagtgtcgc gcgttttgcg tctgcatccg gtgtggaggt
    10381 ggataaagtc gctgaagcct tcgggaagct gaccactgac ccgacgtcgg gactgatggc
    10441 gatggcgcgc cagttccgta acgtgacggc agagcagatt gcgtatgttg cacagctgca
    10501 gcgttccgga gacgaggccg gggcattgca ggcggcgaac gatatcgcca cgaaaggctt
    10561 tgatgagcag acccgtcgcc tgaaagaaaa catgggaaca ctggagacct gggcggataa
    10621 aacagggaag gcattcaaat cgatgtggga tgccattctg gatatcggtc gtcctgaatc
    10681 ctcagcggat atgctcgcca gtgcgcagaa ggcatttgat gaggcggata aaaaatggca
    10741 gtggtaccag agtcggagcc agcgccgggg aaagacctcc tcttttcgtg cgaaccttca
    10801 gggggcatgg gatgaccggg aaaatgcccg tctgggtctg gcagcggcca cgctgcagtc
    10861 ggatatggaa aaagccggtg aactggcggc aagggaccgg gctgagcgtg aggcgtcaca
    10921 gctgaagtat accggagagg cgcagaaggc gtatgagcgc ctgcagacgc cgctggataa
    10981 atataccgcc cgtcagaaag agctgaataa ggccctgaaa gacggaaaaa tcctgcaggc
    11041 ggattacaac acgctgatgg cgtcggcaaa aaaggattat gaatcgacgc tgaaaaagcc
    11101 gtcaggtgtg aaggtgtctg ccggtgagcg ccaggaagac cgggcgcatg cagccatgct
    11161 ggcgcttgaa accgagctca ggacgctgga aaaacacagc ggtgtgaatg agaaaatcag
    11221 ccagcagcgc cgggatttat gggaagcgga aaatcagtat gtggtcctga aagaggccgc
    11281 cacgaaacgg cagttatctg agcaggaaaa atccctgctg gctcatgaga aagagacgct
    11341 ggagtacaaa cgccagctgg ctgagctggg agacaagatt gaacaccaga agcggctgaa
    11401 tgagctggca cagcaggcgg cgcggtttga acagcagcag agcgcgaagc aggcggcaat
    11461 cagcgcaaaa gcccgcggcc tcactgaccg tcaggcgcag cgggagtcgg aagagcagcg
    11521 ccttcgtgag gtgtacggtg ataatccggc tgcgctggcg aaggccacat ctgcactgaa
    11581 gaacacctgg tctgcggagg agcagcttcg tggaagctgg atggccggga tgaagtccgg
    11641 ctggggcgag tgggcggaaa gtgcgacgga cagtttttcg caggttaaaa acgcggccac
    11701 gcagaccttt gacggtattg cacagaatat ggcggcgatg ctgaccggca gcgaacagaa
    11761 ctggcgtggt ttcacccgtt ctgtgctgtc catgctgaca gagatttttc tgaagcaggc
    11821 gatggtgggg atagtcggga gtatcggcag cgccattggc ggtgctttcg gtggtggtgc
    11881 gtctgcctcc acggggacgg ccattcaggc tgcggcggcg aacttccatt tcgcgaccgg
    11941 gggatttacg gggacggggg ggaaatatga acctgcgggg attgttcatc gcggggagtt
    12001 tgtcttcacg aaggaggcga ccagccggat tggcgtggga aatctttacc ggctgatgcg
    12061 cggctatgcc accggcggtt atgtcggtgg caccggaagt ccggcgcaaa tgcggcgttc
    12121 agagggtatc agatttgagc agaacaacaa cgtggtgatt cagaacgacg gtacgaatgg
    12181 tctgccaggt ccacagatgc tgaaggcagt gtatgacatg gcccgcaagg gtgcccgtga
    12241 tgaaattcag gcacagatgc gcgatggtgg tctgttctcc ggaggtggac gatgaagacc
    12301 ttccactgga aagtgaaacc cggtatggat gtggcttcag ccccttccgt caggaaagtg
    12361 cgctttggtg atggctattc ccagcgagcg cctgccgggc tgaatgccga cctgaaaacg
    12421 tacagcgtga cgctttctgt tccccgttgg gaggccacgg cgcttgagtc gtttctggct
    12481 gagcacgggg gctggaaatc ctttctgtgg acgccgcctt atgagtggcg gcagataaag
    12541 gtgacctgcg caaaatggtc gtcgcgggtc agtatgctgc gtgttgagtt cagcgcagag
    12601 tttgaacagg tggtgaactg atgcaggata tccggcagga aacactgaat gaatgcaccc
    12661 gtgcggagca gtcggccagc gtggtgctct gggaaatcga tctgacagag gtcggtggag
    12721 aacgttattt tttctgtaat gagcagaacg aaaaaggtga gccggtcacc tggcaggggc
    12781 gacagtatca gccgtatccc attcagggga gtggttttga actgaatggc aaaggcacca
    12841 gtacgcgccc cacgct
//
LOCUS       DAJVUP010000124        12723 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.124, whole genome shotgun sequence.
ACCESSION   DAJVUP010000124 DAJVUP010000000
VERSION     DAJVUP010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12723
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.124"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..200
                     /gene="ppiC"
                     /locus_tag="OQQ75_003093"
     CDS             <1..200
                     /gene="ppiC"
                     /locus_tag="OQQ75_003093"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004097481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HCS1977334.1"
                     /translation="ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL
                     EPTGPLHTQFGYHIIKVLYRN"
     gene            complement(287..1762)
                     /gene="ilvC"
                     /locus_tag="OQQ75_003094"
     CDS             complement(287..1762)
                     /gene="ilvC"
                     /locus_tag="OQQ75_003094"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HCS1977335.1"
                     /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG
                     CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
                     VNLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR
                     LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET
                     GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
                     ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPE
                     GAVDNAQLRDVNEAIRCHAIEQVGKKLRGYMTDMKRIAVAG"
     gene            1912..2802
                     /gene="ilvY"
                     /locus_tag="OQQ75_003095"
     CDS             1912..2802
                     /gene="ilvY"
                     /locus_tag="OQQ75_003095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HCS1977336.1"
                     /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG
                     QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAA
                     YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM
                     LENLAVVLIAPALPCPVRNQVSSEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPM
                     IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA
                     QKKRLHEPLIEAFWKILPNH"
     gene            complement(2799..4343)
                     /gene="ilvA"
                     /locus_tag="OQQ75_003096"
     CDS             complement(2799..4343)
                     /gene="ilvA"
                     /locus_tag="OQQ75_003096"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HCS1977337.1"
                     /translation="MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL
                     DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG
                     VKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHP
                     MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA
                     CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD
                     LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHILSGANVNFHGLRYVSERCELG
                     EQREALLAVTIPEEKGSFLKFCQLLGGRAVTEFNYRFADAKNACIFVGVRLSRGLEER
                     KEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
                     LNTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNPAF
                     RFFLAG"
     gene            complement(4346..6196)
                     /gene="ilvD"
                     /locus_tag="OQQ75_003097"
     CDS             complement(4346..6196)
                     /gene="ilvD"
                     /locus_tag="OQQ75_003097"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HCS1977338.1"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFT
                     QFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
                     GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG
                     GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIG
                     ILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFS
                     QDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG
                     PAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC
                     ALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELA
                     ARREAQEARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG"
     gene            complement(6261..7190)
                     /gene="ilvE"
                     /locus_tag="OQQ75_003098"
     CDS             complement(6261..7190)
                     /gene="ilvE"
                     /locus_tag="OQQ75_003098"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HCS1977339.1"
                     /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD
                     SHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIF
                     VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAK
                     AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL
                     PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG
                     RCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ"
     gene            complement(7210..7473)
                     /gene="ilvM"
                     /locus_tag="OQQ75_003099"
     CDS             complement(7210..7473)
                     /gene="ilvM"
                     /locus_tag="OQQ75_003099"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HCS1977340.1"
                     /translation="MMQYQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQN
                     INIELTVASPRSVDLLFSQLNKLVDVAHVAICQSTTTSQQIRA"
     gene            complement(7470..9116)
                     /locus_tag="OQQ75_003100"
     CDS             complement(7470..9116)
                     /locus_tag="OQQ75_003100"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HCS1977341.1"
                     /translation="MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLC
                     RHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAP
                     FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVASSGRPGPVLVDIPKD
                     IQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALRE
                     FLATTKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR
                     VTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPELQQPLNINDWQQYC
                     AQLRDEHAWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPE
                     NFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI
                     VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL
                     DTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS"
     gene            complement(9119..9169)
                     /locus_tag="OQQ75_003101"
     CDS             complement(9119..9169)
                     /locus_tag="OQQ75_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977342.1"
                     /translation="MNNSTKFCFSTFSTGN"
     gene            complement(9256..9354)
                     /gene="ilvL"
                     /locus_tag="OQQ75_003102"
     CDS             complement(9256..9354)
                     /gene="ilvL"
                     /locus_tag="OQQ75_003102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilv operon leader peptide"
                     /protein_id="HCS1977343.1"
                     /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA"
     gene            9706..11226
                     /locus_tag="OQQ75_003103"
                     /pseudo
     CDS             9706..11226
                     /locus_tag="OQQ75_003103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418214.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
     gene            complement(11250..11588)
                     /gene="maoP"
                     /locus_tag="OQQ75_003104"
     CDS             complement(11250..11588)
                     /gene="maoP"
                     /locus_tag="OQQ75_003104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ori organization protein MaoP"
                     /protein_id="HCS1977344.1"
                     /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE
                     LDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVE
                     GAEDYTDSDD"
     gene            11707..12546
                     /gene="hdfR"
                     /locus_tag="OQQ75_003105"
     CDS             11707..12546
                     /gene="hdfR"
                     /locus_tag="OQQ75_003105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator HdfR"
                     /protein_id="HCS1977345.1"
                     /translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG
                     VNLFTRHRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLWEC
                     MLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL
                     LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQ
                     IAMLNGCTWLPVSWARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLD
                     EVY"
     gene            complement(12642..12717)
                     /locus_tag="OQQ75_003106"
     tRNA            complement(12642..12717)
                     /locus_tag="OQQ75_003106"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12682..12684),aa:Trp,seq:cca)
BASE COUNT         2911 a         3461 c         3325 g         3026 t
ORIGIN      
        1 gtgccgattt cggcaagctg gcgaagaaac actccatttg cccatcaggc aaacgcggcg
       61 gtgatttagg tgaattccgc cagggtcaga tggttccggc gttcgataaa gttgtgttct
      121 cttgtccggt actggagccg accggcccgc tgcacaccca gttcggttac cacatcatta
      181 aggtgctgta ccgtaactaa tagcaaggcc ttctccagga gaaggccttg agtgttttct
      241 ccctctccct gtgggagagg gtcggggtga gggcatcagc gcgcacttaa cccgcaactg
      301 caatacgttt catatccgtc atatagccgc gcagtttctt acctacctgc tcaatcgcat
      361 ggcagcgaat cgcttcgttc acatcacgca gttgcgcgtt atctaccgca ccttccggaa
      421 tagctttacc cagatcgccc ggttgcagct ctgccataaa cggtttcagc aacggcacac
      481 aagcgtaaga gaacagatag ttaccgtact cagcggtatc agagataacc acgttcattt
      541 cgtacagacg cttacgggcg atggtgttgg caatcagcgg cagctcgtgc agtgattcat
      601 aatatgcaga ctcttcaatg atgccggaat cgaccatggt ttcaaacgcc agctcaacgc
      661 ccgctttcac catcgcgatc atcagtacgc ctttatcgaa gtactcctgc tcgccgattt
      721 tgccttcata ctgcggcgcg gtttcgaagg cggttttgcc ggtctcttca cgccaggtca
      781 gcagtttctt atcatcgttg gcccagtccg ccatcatacc ggaggagaat tcgccggaga
      841 tgatgtcgtc catatgtttc tggaacaggg gtgccatgat ctctttcagc tgttcagaca
      901 gcgcgtaagc acgcagtttc gccgggttag agagacggtc catcatcagg gtgatgccgc
      961 cctgcttcag cgcttcggtg atggtttccc aaccgaactg aattagtttt tctgcgtatg
     1021 ccggatcggt gccctcttcc accagcttgt cgaagcacag cagcgagcca gcctgcaaca
     1081 taccgcacag gatggtttgc tcacccatca ggtcagattt cacttccgca acgaaggacg
     1141 attccagcac gcccgcacgg tgaccaccgg ttgctgccgc ccatgcttta gcgatcgcca
     1201 tgccttcgcc tttcggatcg ttttccgggt gaacggcaat cagcgtcggt acgccgaatc
     1261 cacgtttgta ctcttcacgc acttcggtgc cagggcattt cggcgcaacc atgactacgg
     1321 tgatgtcttt acggatctgc tcgcccactt cgacgatgtt gaaaccgtgc gagtaaccca
     1381 gcgccgcgcc gtctttcatc agtggctgta cggtgcgcac tacgtcggag tgctgcttgt
     1441 ctggcgtcag gttaaccacc aaatccgcct gcgggatcag ttcttcgtaa gtgcccactt
     1501 taaaaccgtt ttcggtcgct ttacgccagg atgcgcgctt ctcggcaatc gcttctttac
     1561 gcagagcgta ggagatatcg agaccagaat cacgcatgtt caggccctgg ttcagcccct
     1621 gtgcgccaca gccgacgata accacttttt taccctgaag gtagctcgcg ccgtcggcga
     1681 attcgtcgcg ccccataaag cgacatttgc ccagctgtgc cagctgctgg cgcaggttca
     1741 gtgtattgaa gtagttagcc atggtgattc ctcgtgatgt tgtgcttctt attgttcggt
     1801 tcgcgtttgc gagattgaat tcactatatg acaggaaatt tattgcggaa attgatatat
     1861 tcacaacgtc acattgcaat ttctgcaacg tcaacattga gggctgctcc attggattta
     1921 cgcgatctga aaaccttcct gcatctggcg gaaagccgcc attttggccg cagcgcgcgg
     1981 gcgatgcacg ttagcccatc cacgctctca cggcagattc agcgcctgga agaagatctt
     2041 ggtcagccgc tatttgtgcg cgataaccgc acggtgacgc tgactgaagc gggcgaagag
     2101 ctgcgcgttt tcgcccagca aacgctgttg cagtatcagc agttgcgcca caccatcgat
     2161 cagcaagggc cgtcgctctc tggcgaatta catatcttct gctcggtgac cgctgcctac
     2221 agccatctgc caccgattct cgaccgcttc cgcgcggaac acccgtcggt ggagatcaaa
     2281 ctaaccactg gtgatgcggc agatgcgatg gaaaaggtag tcactggcga agcggatctg
     2341 gcgattgccg ggaaaccgga gactctgccc ggcgcagtgg cgttttcgat gctggagaat
     2401 ctggcagtag tgctgattgc gcccgcgctg ccctgcccgg tgcgtaacca ggtttcgtca
     2461 gagaagccgg actggtctac agtgccgttt atcatggccg atcagggacc ggtacgccgc
     2521 cgcattgaac tgtggtttcg acgcaataaa atcagcaacc cgatgattta cgccacggtt
     2581 ggcgggcatg aagcgatggt atcgatggtg gcgctcggct gtggcgtggc gctgttgccg
     2641 gaagtagtgc tggaaaacag ccccgaaccg gtgcgtaacc gcgtgatgat tttagagcgc
     2701 agcgatgaaa aaacgccgtt tgaactgggc gtttgtgcgc agaaaaagcg gctgcatgag
     2761 ccgctgattg aggcgttctg gaagattttg ccgaaccatt aacccgccaa aaagaacctg
     2821 aacgccggat tattggtttc gtcgtggcaa tcgtagccca gctcatttag ccgggtttcg
     2881 aaatccggtt catggtcgcc gagttcgaac gccgccagta cgcgcccgta gtcggtgcca
     2941 tggctgcgat agtggaacaa agaaatgttc cagtgcgtac ccagcgtgtt gaggaagcgc
     3001 agcagcgcgc ccggtgattc cgggaattcg aagctgtaga ggcgttcctg caacggatgt
     3061 gacggacgcc cgccgaccat atagcgcaca tgcaacttcg ccatttcgtc gtcggagaga
     3121 tccaccacgc tgtagccgcc gtcgttgagc atctgcaaaa tttctttgcg ctcttcgagg
     3181 ccgcggctca ggcgcacgcc gacaaagatg caggcgtttt tggcatcggc aaaacggtag
     3241 ttgaactcgg tgaccgctcg cccgccaagc agttggcaga atttgaggaa gctgcctttt
     3301 tcttccggaa tggtcaccgc caacaacgct tcacgctgtt cgcccagttc gcagcgttcc
     3361 gagacgtagc gcaggccgtg gaagttcacg ttggcaccgg aaagaatatg cgccagccgt
     3421 tcgccgcgaa tgttgtgctg ggcgatatat tttttcattc ccgccagcgc cagcgcgcca
     3481 gagggttccg ccaccgcgcg cacatcttcg aataaatcct tcatcgccgc acagatcgca
     3541 tcactatcga cggtgatgat gtcgtcgaga tactcctggc ataaacggaa ggtttcgtca
     3601 ccgatgcgtt ttaccgctac gccttcagca aatagcccta cgcgcggcag atcaaccgga
     3661 tgacccgcat ccagcgctgc tttcaggcag gcggagtctt ccgcttctac ggcgatcact
     3721 ttgatttgtg gcatcagttg tttgatcagc accgcaacgc ccgccgccag accgccgccg
     3781 ccgactggca caaatacgcg gtcgagatgg gcgtcctgct ggagcagttc cagcgccagc
     3841 gtgccttgcc cggcaatcac catcggatgg tcgaacggcg gcacccaggt gaacccctgc
     3901 tgctgtgaca gttcgatcgc tttagctttc gcttcgtcaa agttcgcgcc atgaagcagc
     3961 acttcgccgc cgaatccacg taccgcatcg actttgatgt cggcggtggc ggttggcata
     4021 acgatcaggg ccttcacgcc taaccgcgca gaagaaaacg cgacgccctg cgcgtggtta
     4081 cccgcagaag cagtgatcac gccgtgcgct ttttgttctt ccgtcaggcc cgccatcatg
     4141 gcgtatgcgc cgcgcagctt aaagctgtgc actggctggc gatcttcgcg cttcaccaga
     4201 atgacgttat caagacgcga cgacagtttt tccatttttt gtagcggcgt aacctgcgct
     4261 gcctcgtaaa ccggcgcgcg cagcactgct cttaaatatt cggcaccttc cggagcacca
     4321 gacaggggtt gcgagtcagc cattattaac cccccagttt cgatttatcg cgcaccgcac
     4381 ctttgtcggc gctggttgcc aggctggcgt aggcgcgcag ggcaaaggaa acctgacgtt
     4441 cacggttttt cggcgtccag gctttgtcac cccgagcttc ctgcgcttca cgacgcgccg
     4501 ccagttcggc atcgcttacc tgtaactgaa tgccacggtt cgggatgtcg atagcgatca
     4561 ggtcaccatc ttcaatcaga ccaatgctgc cgccgcttgc cgcttccggt gagacgtggc
     4621 cgatggaaag accagaggtg ccgccagaga aacgaccgtc ggtgatcagc gcacaggctt
     4681 taccgagacc cattgatttc aggaagctgg ttgggtagag catttcctgc atgccagggc
     4741 cgcctttcgg gccttcatag cggatcacca ccacatcgcc cgcgacaact ttgccaccga
     4801 ggatcgcttc taccgcgtcg tcctggcttt cgtacacttt tgccgggccg gtgaatttga
     4861 ggatgctgtc atcgacgccc gcggttttca cgatgcagcc gttttcagca aaattaccgt
     4921 agagcaccgc caggccgccg tctttgctgt aggcgtgttc cagcgagcgg atacagccgt
     4981 ttgcgcgatc gtcgtccagc gtatcccaac ggcaatcttg cgagaatgcc tgggtggtac
     5041 ggatacccgc agggccggcg cggaacatat tttttaccgc gtcatcctgg gtcagcataa
     5101 cgtcgtattg ctccagcgtt tgcggcaacg tcaggccgag cacgtttttc acatcacggt
     5161 tcagtaaccc cgcgcgatcc agttcgccga gaataccgat aacaccacca gcacggtgaa
     5221 catcttccat atggtatttc tgggtgctcg gcgcaacttt acacagctgt ggaaccttgc
     5281 gggaaagctt atcgatatca ctcatggtga agtcgatttc cgcttcctgc gccgccgcca
     5341 gcaggtgaag tacggtgtta gtcgatccac ccatcgcgat atccagcgtc atggcgtttt
     5401 caaacgccgc cttactggcg atattacgcg gcagtgcact ttcgtcgttt tgctcgtaat
     5461 aacgtttggt caattcaaca atgcgtttac cagcattaag gaacagctgc ttacggtccg
     5521 cgtgggttgc cagcagcgag ccgttgcctg gctgcgacaa acccagcgct tcggtcaggc
     5581 agttcattga gttagcggta aacatcccgg agcaggaacc gcaggttggg caggcggaac
     5641 gttcaacctg atcgctctgg gagtcagaaa ctttcgggtc tgcgccctgg atcatcgcat
     5701 caaccagatc gagtttgatt atctgatcgg acagtttggt tttcccggcc tccatcgggc
     5761 cgccggaaac aaagatcacc ggaatattca ggcgcaggga agccatcagc atccccgggg
     5821 taattttgtc gcagttagag atgcagacca tggcgtcggc gcagtgggcg ttgaccatat
     5881 actcaacgga atcagcgatc agttcgcgag atggaagtga ataaagcatc cccccgtggc
     5941 ccatggcaat cccatcatcc accgcaatgg tgttgaactc tttggcaacg ccgccagccg
     6001 cttcaatttg ttcggcgacc agtttaccga gatcgcgcag atggacgtga cccggtacaa
     6061 attgggtgaa cgagttcaca accgcgataa tcggcttgcc aaaatcggcg tcggtcattc
     6121 cggtggcgcg ccacagcgca cgagcacccg ccatattacg accatgagtg gtggtggcgg
     6181 aacggtactt aggcatactt tatttactcc cagtgtctgt ctcgtaaatg ggacggtgcg
     6241 tgccgtccca ttttttgtat ttattgatta acttgatcta accagcccca tttatcttcg
     6301 gtttcgccag tgaagaggcc gaagaaggct tgctgaatgc gtttggtaac cgggccacaa
     6361 cggccttcgc caacctgaat accgtctacg ctgcgcactg gcgtgatttc tgccgcagta
     6421 ccggacataa acacttcatc cgccaggtac agggattcgc gcgacagcac ctgctcacgc
     6481 acttcaattc ccagctcttt cgccagtttg atgatggcat cacgggtaat acccggcagc
     6541 gcggatgagg taaacggtgg ggtgaacagc acgccgtctt tcacttcaaa caggttttca
     6601 cctgcgcctt cagagatgta accgttcaca tccagcgcga taccttcctg ataaccgtgg
     6661 cggcgcgctt cgctacccac cagcagggaa gagaggtagt taccaccggc ttttgccgcc
     6721 gtcgggatgg tgtttggtgc tgcgcggttc caggaggaaa ccatcgcatc gatcccctgc
     6781 tccagcgctt ctgcgcccag atacgctccc cacgggaaag cagcgataat cacgtcggtt
     6841 gagtatcccg ctggcgggtt tactcccatg ccaacatcac cgacgaagat cagcggacgg
     6901 atataggcgc tggtgagatt atttttgcgg atcacgtcac gacaagcttc catcagctca
     6961 tcaatgctct gcgaaaccgg gaagcgatag attttggcgg agtcatgcag acgctgcata
     7021 tgctcacgat ggcggaatac aaccggtcct ttgtgcgagt cgtagcaacg gatgccttca
     7081 aaaaccgaag tgccatagtg cagcgcgtgc gacatcacat gcaccttcgc gtcttcccag
     7141 cgaaccatct ccccattgaa ccaaatgtaa tcagctttct tcgtggtcat ttttatattc
     7201 cttttgcgct caggcgcgga tttgttgtga tgtggttgtg ctctggcaga tggcaacgtg
     7261 tgcgacgtcc accagtttat ttaactgact aaacagtaag tcgaccgacc gtgggctggc
     7321 aacggtcaat tcgatattta tattttgtgc atcgctggcg gcggccatat tcattgagca
     7381 gacgtggaaa ccacgatgac gcaccacgcg taaaacacgt tctaaggttt ccggattgaa
     7441 gcgagccgat acattgacct gatattgcat catgataatt tctccaacat ttctgaatta
     7501 ctggcgccag gcggcaccag cggccagacg ttctcaagtt cgtcgattga gacatgaagc
     7561 aggtatggcc catcactgtt cagcatggtg tcgagtgccg cttcaacctg gtctttacgg
     7621 gtgatgtgtt ggccagggat gccgaaggcg ctggctaaca tgaggaaatc ggggttatca
     7681 gtaagggtgg tttcgctgta tcgttcctga aaaaacagtt gctgccattg tcgaaccatc
     7741 cctaaccgtt ggttatcgag taagacgatt ttcaacggta actgcttgcg ttttacggtg
     7801 cccagctctt gcacattcat catgaaagag ccgtcaccgg agatacagac gacggtatcg
     7861 ttcggtcgcg cgacttgtgc gccaaccgcc gctggtaaac caaaacccat agtgcctaag
     7921 ccgctggagg tgatgaaatt ttccgggcga gtgtgggcga tgtgttgcgc agcccacatc
     7981 tggtgctgcc ccacatctgt ggtcacgacg caatccgcag gtttacgatc cgacagttgt
     8041 tttaacaaca acggcgcgta gatagcgtcg ccgggatggt cgtaacgcca ggcatgttca
     8101 tcacgcagct gcgcgcagta ttgctgccag tcattgatat ttaacggctg ctgtaattct
     8161 ggtaacagag catttaaatc accttgtaat gccacatgtg cctgacgcag cttgttcatt
     8221 tctgccgggt cgatatccat atggataacg ctggcgtgtg gtgcgaaggt gttcagtttg
     8281 ccggtcaccc ggtcatcaaa acgtgcaccc acggcgatca gcaagtcgca ctcctgcacc
     8341 gcgaagttcg ccgctttggt gccatgcatt cccagcatgc ccagatagta cggataatct
     8401 gcttcaactg cgcccagccc tttcagcgtg caggtggcag gcatttttgt ggtagcgaga
     8461 aattctcgta aagcaggaac tgcctgcgcc atacccacgc caccaccaac gtacagcatc
     8521 ggtttttgcg cttttgccag catctggcgc gcttgctcaa cttcggcatg tgggaaagtc
     8581 acttcgtttt caacggtggt gaaccacggt tccaggtcac cgctggctag ctggatatct
     8641 tttgggatat cgaccagaac cggaccagga cgacctgagc tggcaacgtc gaatgcttca
     8701 gccataatgc gcggcaactc ttccagcgac tgcaccagaa agctgtgctt ggtacaggct
     8761 aacgacaatc ccaggacatc cacttcctga aatgcatcag tgccgataaa cggtgcggac
     8821 acttgaccgg tgatggcaac aacagggata gaatctaaca gtgcgtccgc aagcccggtt
     8881 atcaggttgg ttgcgcccgg accagacgtg gcgatacata cgccagtttt gccggtagca
     8941 cgggcataac cgatagccgc cattgccgca ccctgctcat gtcggcacag caagtgctcc
     9001 acgccgccgt catacaatgc atcgtaaacc ggcataattg cgccacccgg ataaccgaaa
     9061 acggtgttca caccctgtgc ccgcaacgca tgtaccaccc actgtgcgcc attcatagtt
     9121 agttccccgt gctgaatgtt gagaaacaga attttgtgct gttattcatt gtctgctcct
     9181 cggttatgtt tttaaggtca aaaaaaaccc ccggaccttt cggtgcgggg gtcttagttc
     9241 gttaaggctt gatttctaag cctttcctcg tccaagtgca gccccgcacg gtgggataat
     9301 aatcaccacc acgctaatca cgaccaggct aatcactcgt agaagggctg tcattttgtc
     9361 ttttcttgca tcttgttcga aggaatgcct aaagagttac cataggtttt gtaaatagta
     9421 caagatattt tttggccgat ttttatgatg cgtttaataa tttcaatata agttgttgtt
     9481 ttttaaaaat aaaatagtga gtaaaaaaat tcaatttcag tatgaatgtt gttcccttcc
     9541 tcgtagttca tcctttgtcc gctgcatttt tgcgagcatc attccaccgc cagaacaact
     9601 caacttcact tgcacaaata aacaggaatc agccactaaa attcacgaat tagcgggcta
     9661 cagcagcgat atcttatgca cataatggtg actcaaggag ggcttatgtc actgtcaatt
     9721 gttcataccc gcgcagccct gggagtaaat gcgcccccga tcactgttga ggtacatatc
     9781 agtaaaggtc tacccggctt aacgaaggtg ggcttaccag aaacaacggt aaaagaagct
     9841 cgcgatcgcg tgcgcagcgc cattatcaat agcggatatg aatatccggc gaaaaaaatc
     9901 accatcaacc tggctccagc tgatctgcca aaagaagggg gacgatatga tttacctatc
     9961 gccattgcgt tgctggcggc ctcagaacag cttacagcca ataagttaga tgaatatgga
    10021 ttagtcggag aactggcgct tacaggcgct ctgcgtggcg ttcccggcgc aatctccagt
    10081 acaactgaag ctattaagtc gggcagaaaa attatcgtcg cgaaagataa cgaagatgaa
    10141 gtggggctaa ttaacggtga aggatgcctg atagccgatc atctgcaagc tgtctgtgcg
    10201 tttctggaag gtaagcacgc tctcgaacgc ccgaaaccaa ctgatgcagt atcccgggcg
    10261 ctacaacatg atctcagtga tgttatcggt caggaacaag gaaagcgagg actggaaatt
    10321 accgccgctg gcgggcacaa ccttttactg attgggccgc cgggaacagg taaaacaatg
    10381 ctcgccagcc gtattaatgg cctgttgcca gatttaagca atgaagaggc actggagagt
    10441 gctgcgatat taagtctggt aaatgctgaa tcagtacaaa aacaatggcg gcagcgcccg
    10501 ttccgctcac ctcatcacag tgcatcgtta actgcgatgg taggcggtgg cgcaattcca
    10561 gggcccggtg aaatttcgct ggcgcataac ggcgtgcttt ttcttgatga gttacctgaa
    10621 tttgaaaggc gtacactgga tgccttgcga gagccgattg aatccgggca gatccatctt
    10681 tcacgcacgc gagcaaaaat aacctatcca gcccgtttcc agcttgtcgc ggcgatgaat
    10741 cccagcccta ccggacatta tcagggaaac cataaccgct gcacaccaga gcaaacgctg
    10801 cgttatctca accgactctc tggtcccttt ctcgaccgct tcgatctctc actggagatc
    10861 ccattaccgc ctcccggtat tttgagtaaa acggtagtgc cgggagaaag cagcgccacc
    10921 gttaaacaac gcgtaatggc cgccagagag cgccaattta agcggcagaa taaactgaac
    10981 gcctggctgg atagtccgga aatacgccaa ttctgcaaac ttgagagcga agatgcgatg
    11041 tggctggaag aaacgctgat ccatctgggg ttatcgattc gtgcctagca gcggttattg
    11101 aaagttgcac gaaccattgc tgatattgat cagtctgaca ttatcacacg tcaacatttg
    11161 caggaggcag ttagctatcg agcgattgac cgtttgctca tccatctgca gaaactactg
    11221 acataaaaaa gggcatttcg ccctttttat taatcgtcag aatcggtgta gtcttcagca
    11281 ccttcaacct gcggtttacc gccggaaagg gtgtgaaaac gttttggacg cttaatacgc
    11341 gtcatatact tggaccacac gcgttctgct tctgtcactg gctcacgttc gccacggcat
    11401 actgctacga agagtttctc ttcctcggta accggctcgc gtttgccaag atccaactca
    11461 ttgaaggcat aaccatgacg ctcaagcagt tgtgcctctt tgatggtgaa atcaccatga
    11521 cgagagaatc cacgtggata atgtttattg tcgaaatatc gattagtcgt cgtaaagctt
    11581 tccgccatcc tgcacgctcc taattctttg accgagctag ttatggcgcg gagtattagt
    11641 tacgcttgac agagtgtaaa acaaaacatt taaatcataa cgacaaataa ttttgcggag
    11701 agcactgtgg atacggaatt gttaaaaact ttcctggaag ttagccgaac gcgtcacttt
    11761 ggtcgagcgg ctgaatcgct ctatctgacc cagtcagcag tgagctttcg aatcagacaa
    11821 ctggaaaatc aactgggtgt gaaccttttc acccgccaca gaaacaatat ccgtttaacc
    11881 gctgccggtg aaaaactact gccttatgca gaaacgctca tgagcacctg gcaggccgcc
    11941 cgcaaggagg tggcgcatac ctcacgacat aacgagtttt ctatcggtgc cagcgcctca
    12001 ttgtgggaat gtatgcttaa tcagtggctg ggacgtttgt atcaaaatca ggatgcccat
    12061 acaggcttac agttcgaagc gcgaattgcc caacggcagt ctctggtaaa acagctgcat
    12121 gaacgccagc ttgatcttct tattaccact gaagcgccca aaatggacga atttagtagt
    12181 cagttgctgg gatatttcac tttagcgctt tataccagtg ccccttcaaa actaaaggga
    12241 gatcttaatt atctgcgact tgagtggggg ccagattttc aacagcatga ggcaggtttg
    12301 atcggtgctg acgaagtgcc cattctgaca accagttctg ctgaactggc acagcaacag
    12361 attgcgatgc ttaatggttg cacctggcta cccgtcagct gggcgcgtaa aaaaggcggc
    12421 ctgcataccg ttgtcgatag cacaacactt tcacggccgc tttatgccat atggctgcaa
    12481 aatagcgata aaaatgcgtt gattcgcgat cttttgaaaa ttaacgtgct ggatgaagtg
    12541 tattaatatg aatggctggc aaggatgccg gtagaaggat ttacttcgga gagggttatt
    12601 tcagataaaa aaaatcctta gctttcgcta aggatgattt ctggcagggg cggagagact
    12661 cgaactccca acacccggtt ttggagaccg gtgctctacc aattgaacta cgcccctaat
    12721 tag
//
LOCUS       DAJVUP010000125        12601 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.125, whole genome shotgun sequence.
ACCESSION   DAJVUP010000125 DAJVUP010000000
VERSION     DAJVUP010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12601
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.125"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            244..1341
                     /gene="mltA"
                     /locus_tag="OQQ75_003107"
     CDS             244..1341
                     /gene="mltA"
                     /locus_tag="OQQ75_003107"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HCS1977346.1"
                     /translation="MKGRWVKYLLMGTVVAMLAACSSKSTDRGQQYKDGKFTQPFSLV
                     NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI
                     DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA
                     LGDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR
                     GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA
                     SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG
                     PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG"
     gene            1418..2224
                     /gene="tcdA"
                     /locus_tag="OQQ75_003108"
     CDS             1418..2224
                     /gene="tcdA"
                     /locus_tag="OQQ75_003108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HCS1977347.1"
                     /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW
                     AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
                     TVVDDFVTPDNVAQYMSAGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID
                     PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSIGKLGVDCVFSTEALVYPQSDGT
                     VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG"
     gene            complement(2275..2718)
                     /gene="csdE"
                     /locus_tag="OQQ75_003109"
     CDS             complement(2275..2718)
                     /gene="csdE"
                     /locus_tag="OQQ75_003109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase sulfur acceptor subunit
                     CsdE"
                     /protein_id="HCS1977348.1"
                     /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQL
                     PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVLGLLAVLLTAVEGK
                     TAAELQAQSPLALFDELGLRGQLSASRSQGLNALSEAIIAAAKQV"
     gene            complement(2718..3923)
                     /gene="csdA"
                     /locus_tag="OQQ75_003110"
     CDS             complement(2718..3923)
                     /gene="csdA"
                     /locus_tag="OQQ75_003110"
                     /EC_number="3.13.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HCS1977349.1"
                     /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATRQFYS
                     LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA
                     RPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPR
                     SRILALSQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAF
                     SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMIHEVSFDGFTTQSAPWKLEAGTPNV
                     AGVIGLSAALEWLADYDINQAENWSHSLATLAEDALAKRPGFRSFRCQDSSLLAFDFA
                     GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV
                     DRALELLVD"
     gene            4115..4342
                     /locus_tag="OQQ75_003111"
     CDS             4115..4342
                     /locus_tag="OQQ75_003111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417289.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1977350.1"
                     /translation="MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTD
                     NDTGMISYKDANGNKQQINRTDVKEMVELDQ"
     gene            4693..5610
                     /gene="gcvA"
                     /locus_tag="OQQ75_003112"
     CDS             4693..5610
                     /gene="gcvA"
                     /locus_tag="OQQ75_003112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     regulator GcvA"
                     /protein_id="HCS1977351.1"
                     /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL
                     EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP
                     SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL
                     YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGP
                     IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA
                     ELGKIAAFRQWILAKAAAEQEKFRFRYEQ"
     gene            5629..6024
                     /locus_tag="OQQ75_003113"
     CDS             5629..6024
                     /locus_tag="OQQ75_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HCS1977352.1"
                     /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGL
                     EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT
                     PVGGVSFLAGWALMLVGAIRLKRKGVSHE"
     gene            6017..7117
                     /gene="rlmM"
                     /locus_tag="OQQ75_003114"
     CDS             6017..7117
                     /gene="rlmM"
                     /locus_tag="OQQ75_003114"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010435097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HCS1977353.1"
                     /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENSGYVIY
                     ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE
                     LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT
                     GYSYSNNNSPFYMGIPRLKFPAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL
                     GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC
                     DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA
                     QIQARQLYHDREEVTVHVRRIWAAVGGRRDER"
     gene            complement(7161..7892)
                     /gene="fucR"
                     /locus_tag="OQQ75_003115"
     CDS             complement(7161..7892)
                     /gene="fucR"
                     /locus_tag="OQQ75_003115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose operon activator"
                     /protein_id="HCS1977354.1"
                     /translation="MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQT
                     QGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDAS
                     STCWYLARQLPDINIQVFTNSHPICYELGKRERIQLISSGGTLERKYGCYVNPSLISQ
                     LKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEA
                     RIGHLDEVTHIISDERQVATSLVTA"
     gene            complement(7950..8372)
                     /gene="fucU"
                     /locus_tag="OQQ75_003116"
     CDS             complement(7950..8372)
                     /gene="fucU"
                     /locus_tag="OQQ75_003116"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HCS1977355.1"
                     /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIR
                     ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI
                     IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP"
     gene            complement(8374..9792)
                     /gene="fucK"
                     /locus_tag="OQQ75_003117"
     CDS             complement(8374..9792)
                     /gene="fucK"
                     /locus_tag="OQQ75_003117"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417283.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HCS1977356.1"
                     /translation="MKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENN
                     TWHQWSLDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISW
                     KCPRTAAVMDNIEQLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERTHAWFFI
                     SSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIG
                     TLQNSAAAMLGLPVGIPVISAGHDTQFALFGAGADQNEPVLSSGTWEILMVRSAQVDT
                     SLLSQYAGSTCELDSQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAP
                     SADGVKMQCDLLSCQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKA
                     SELLLVGGGSRNTLWNQIKANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEAR
                     AQIHYQYRYFYPQTEPEFIEEV"
     gene            complement(9789..11534)
                     /gene="fucI"
                     /locus_tag="OQQ75_003118"
     CDS             complement(9789..11534)
                     /gene="fucI"
                     /locus_tag="OQQ75_003118"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HCS1977357.1"
                     /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEK
                     LRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPT
                     RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL
                     RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID
                     QKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQG
                     NSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVV
                     ATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLIN
                     SGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF
                     LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRL
                     TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSA
                     WAAHGMDIEVLQERL"
     gene            complement(11567..>12601)
                     /gene="fucP"
                     /locus_tag="OQQ75_003119"
     CDS             complement(11567..>12601)
                     /gene="fucP"
                     /locus_tag="OQQ75_003119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HCS1977358.1"
                     /translation="ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA
                     NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ
                     LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRL
                     ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR
                     FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFS
                     LGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF
                     ARFRSQTATN"
BASE COUNT         3016 a         3157 c         3337 g         3091 t
ORIGIN      
        1 gagcccgacg agctaccagg ctgctccacc ccgcgtccgt ggatgcgcac tatactccgc
       61 tcgcgttttc atgcaacctt ttttttaccc cgatcacgga tttagcatga ttttgaacaa
      121 aaacaaacca ctaaagccta ttttttgtgc aaaatttgcg tcagggagag gctgctcatt
      181 tcattaaacg cggcggtttg ttatcttcgt tgcgccttat tttttaacct gaagaagaga
      241 acaatgaaag gacgttgggt aaagtacctt cttatgggca cggttgtggc aatgcttgcc
      301 gcctgctctt ccaaatcaac cgatcgcgga cagcaatata aagacgggaa atttacccag
      361 cctttctctc tggtgaacca gccagatgcc gttggcgcgc cgattaacgc cggtgatttt
      421 gccgagcaaa ttaaccatat ccgtaattcg tcaccgcgtc tgtatggcaa ccagagtaat
      481 gtttataacg cggtgcaaga gtggctgcgc gcaggcggtg atacccgcaa tatgcgccag
      541 ttcggcattg atgcctggca gatggaaggt gccgacaact atggtaacgt gcagtttaca
      601 ggctattaca cgccggtaat tcaggcgcgc catacccgcc agggcgagtt ccagtatcct
      661 atttaccgta tgccgccaaa acgtggtcgt ctgccgtctc gtgcggagat ctacgcgggg
      721 gcattgggcg ataaatacat cctcgcttac agcaactctc tgatggataa cttcattatg
      781 gatgtgcagg gtagtgggta tatcgacttt ggtgatggca gtccgcttaa ctttttcagc
      841 tatgcaggga aaaacggtca tgcctatcgc agcattggta aggtgctgat cgaccgtggc
      901 gaagtgaaaa aagaagatat gtcgatgcag gcgattcgtc attggggcga aacacacagt
      961 gaagccgagg ttcgcgagct gctggaacag aacccgtctt tcgtcttctt taaaccgcaa
     1021 tcttttgcac cggtgaaagg ggcaagtgcg gtgccgctgg ttggccgtgc ttctgttgcc
     1081 tccgatcgtt caattattcc gccaggtact accttgctgg cagaagtgcc gctgctggat
     1141 aataacggca aatttaacgg tcagtacgaa ttgcgtctga tggtggcgct ggatgtcggt
     1201 ggcgcaatca aaggccaaca cttcgatatc tatcaaggga tcgggccgga agccggacat
     1261 cgcgcaggtt ggtacaacca ctatggacgt gtctgggtgc tgaaaaccgc cccgggcgca
     1321 ggtaacgtct ttagcggctg atgtgttatt ctgtataccg tttttacgga tacgacaggg
     1381 tgagggataa cctcaccctt tttaattctg aggtgctatg tctgtggtaa ttagtgatgc
     1441 atggcgtcag cgttttggtg gcacagcgcg tctgtatggt gaaaaagcgt tgcaactgtt
     1501 tgctgacgcg catatttgtg tggttggtat cggtggtgtc ggttcctggg cggcggaagc
     1561 gctggcgcgc acggggattg gcgcaatcac gcttatcgat atggatgatg tgtgcgtcac
     1621 caataccaat cggcaaattc acgctctgcg cgataacgtc gggctggcaa aagcggaagt
     1681 catggcggag cgcattcgcc agattaaccc ggagtgccgt gtaacggtgg tggatgattt
     1741 cgtgacgccg gataacgtag cgcaatatat gagtgccggt tattcgtacg tgattgatgc
     1801 cattgatagt gtacgaccca aagcggcgct gattgcttat tgtcggcgca ataaaatccc
     1861 gctggtcacg accggtggcg cgggtgggca gattgacccg acgcagattc aggttaccga
     1921 tctggcgaaa acgattcagg acccgctggc ggcgaagttg cgcgagcgcc tgaaaagcga
     1981 ttttggcgta gtgaaaaaca gtataggtaa gctcggcgtg gattgcgtgt tttctactga
     2041 agcgctggtg tacccgcagt cagacggtac ggtgtgtgcg atgaaagcca cggcagaagg
     2101 gccgaagcgg atggattgtg catctggatt tggcgcggca acgatggtga ccgccacctt
     2161 tgggtttgtt gcggtttctc atgcgctgaa gaagatgatg gcgaaagcag cgcgtcaggg
     2221 ttaaacaatc aggtcggatg cgacgcgaac gtcttatccg acctggttct gtgcttaaac
     2281 ctgcttcgcc gcagcgataa ttgcctcgct taacgcattc aacccctggc tgcgtgaggc
     2341 gctaagctgc ccacgcaatc ccagctcatc aaacaatgcc agcggcgact gtgcctgtaa
     2401 ttcggcggcg gttttcccct caacggcagt caacaacacc gccaacaggc cgagcacaat
     2461 gcgcccttcg ctgtcgccaa agaagtgcat tttaccgttt tcagccacgg tatatcccag
     2521 ccagacgcgg ttttcgcatc cggcaatctc tttagcctgc gcttttaact cgtctggcaa
     2581 agccggaagc tgtttcccca acatgatcaa ctggcgatat ttatcttccc attgcgtcaa
     2641 cggtgcgaag gtattgcgta acgtttctgc ggttacggtt gtgccgaacg gatgtccggc
     2701 gaattgcggg tttgtcatta atccaccaat aattccagcg cgcggtcaac ggcattcacc
     2761 agcgcatcca catcactctt tgtattatat ggcgcaaaag aggcgcgcag tgtgccggtt
     2821 acgcctaatt ctgccagtag cggctgagca caatgttgcc cggcccgcaa ggcaataccg
     2881 tactccgcca gtagcgtcac catatcgctg tgatgaacgc cagcaaaatc aaaggccagc
     2941 aggctggaat cctggcagcg gaatgaacga aagcctggac gtttcgccag cgcatcttcc
     3001 gccagcgttg ctaagctatg gctccagttt tcggcctggt tgatatcgta atctgccagc
     3061 cattccagcg ccgcgcttaa tcctatgaca ccagccacat ttggcgttcc tgcttccagt
     3121 ttccacggcg cagattgagt cgtgaagccg tcaaaactca cttcgtgaat cattttgccg
     3181 ccacccagcc agggcgacat cgcttccagc agttctgatt tgccatacag cacgccgata
     3241 cccgtcgggc catacagttt gtgaccagag aaagcataga aatcgatatc cagttgctga
     3301 acatccgcgg ggaaatgcac cgccccctga gcaccatcaa ccatcaccac catccctgct
     3361 gaatgagcaa aggtaatcgc tcgcgccaga tccgggcaac cgccagtaac gttcgacatc
     3421 tgactcaacg ccagaatccg actacgggga gtaatcagtt ctggcaacaa atcgacatcc
     3481 ggcagtcgct gcgcattaag cggcaatttc accactttgg ctccagtttg ttgggcgacc
     3541 atcagccagg ggacgaggtt ggcgtggtgt tctgccacgc tgacaataat ctcatcgccc
     3601 ggttgcagac gcggacgcgc atagcattgt gccaccatgt tgatggattc agtggtgccg
     3661 cgcgtccaga cgatagtttt atcatccggt gcattcagta attgcgccac tttctctcgt
     3721 gcagcttcat aacgcgcggt caggcgttgg gcttcggcaa actggctgcg atggacgttt
     3781 ccggcgctca ggctgtaaaa ctgtcgagtg gcttcaacca cggcttcagg tttaagcgcg
     3841 gtcgcggcgc tgtcgagata gacgcccgca tcctgtagtg cgggaaactg ggcgcgaaac
     3901 tgcgcgggat taaaaacgtt catggtactc ctcggcttga tgcaccgatc gtgacgcaaa
     3961 attcactttg atacaaggag agtgctaacc atcagaatta tctggatatc ctggcgaagc
     4021 cgcgtaagta acatatgctg aatagtgtta ggcgttaatt ttagcctgtt aatcaatact
     4081 attaagattt attaatcgct ttaaggagaa gatgatgaaa aagactgccg caattatttc
     4141 tgcctgtatg ctgacttttg ccctgagcgc ctgttccggt tcgaactatg tgatgcacac
     4201 caatgacgga cgtaccatcg tctctgacgg caaaccacag actgataacg ataccggtat
     4261 gatttcgtat aaagacgcta atggcaacaa acagcagatc aaccgtactg acgtgaaaga
     4321 gatggtcgaa ctggatcagt aattcgcgat cgcaaggtaa aaaaaagcac cgcaattagg
     4381 cggtgctaca ttaatcacta tggacagaca gggtaaatgt acaggaagtg aaaaaaggta
     4441 gctttgctac catggtctga atcgcagacc aattgcaaac acaacaacac aacatcacaa
     4501 ccgtaagcca aaagttcacc agaacacgca ttccgataaa acttttcgtt ccggctcagg
     4561 aagtgccgcc actataggta tttgctggta gaagctcaac ggacaattta taatggctca
     4621 gattaaaaaa actaataggt tacatagtgt gatctaattg ttaaattcat ttaacatcaa
     4681 agtttaatag ccatgtctaa acgattacca ccgctaaatg ccttacgagt ttttgatgcc
     4741 gcagcacgcc atttaagttt cactcgcgca gcagaagagc tttttgtgac ccaggccgca
     4801 gtaagtcatc aaatcaagtc tcttgaggat tttttggggc taaaactgtt ccgccgccgt
     4861 aatcgttcac tcctgctgac cgaggaaggg caaagctatt tcctcgatat caaagagata
     4921 ttttcgcaat taaccgaagc gacgcgtaaa ctccaggccc gtagcgccaa gggggcgttg
     4981 acggtcagtt tactccccag tttcgccatt cattggttgg ttccgcgact ttccagcttt
     5041 aattcagctt atccgggaat tgacgttcga atccaggcgg ttgatcgtca ggaagataag
     5101 ctggcggatg atgttgatgt ggcgatattt tatggtcggg gcaactggcc ggggctacgg
     5161 gtggaaaaac tgtacgccga atatttattg ccggtgtgtt cgccgctact gctgactggc
     5221 gaaaaaccct tgaagacacc ggaagatctg gctaaacata cgttattaca tgatgcttcg
     5281 cgccgtgact ggcagacata tacccgacag ttggggttaa atcatatcaa cgttcagcaa
     5341 gggccaattt ttagccatag cgccatggtg ctgcaagcgg ctatccacgg gcagggagtg
     5401 gcgctggcaa ataacgtgat ggcgcaatct gaaatcgagg ccggacgtct tgtttgcccg
     5461 tttaatgatg ttctggtcag taaaaacgct ttttatctgg tttgtcatga cagccaggca
     5521 gaactgggta aaatagccgc ctttcgccaa tggatcctgg cgaaagccgc tgctgaacaa
     5581 gaaaaattcc gctttcgtta tgaacaataa tttacgtagg gtacgaccat gaccagccgt
     5641 tttatgctga ttttcgccgc cattagcggc ttcatttttg tggctctggg cgcttttggc
     5701 gcgcatgtgt taagtaaaac catgggggcc gttgagatgg gctggatcca gaccggcctc
     5761 gaataccagg cgtttcatac gctggcgatc ttaggtctgg cggtggcaat gcagcgtcgc
     5821 atcagtatct ggttttactg gagtagcgtt ttcctcgcgt taggcacggt gttgttcagc
     5881 ggcagccttt attgcctggc gctgtcccat ctgcgtttgt gggcgtttgt cactccggtt
     5941 ggcggcgtga gcttcctcgc gggctgggcg ttaatgttag ttggtgctat ccgtttaaag
     6001 cgcaagggcg taagtcatga ataaggttgt attgctgtgc cgtccgggct ttgaaaaaga
     6061 gtgcgccgca gaaattaccg ataaagccgg ccagcgggaa attttcggtt ttgcccgcgt
     6121 gaaagagaat tcgggttatg tcatttatga atgttatcaa cctgatgatg gcgataagtt
     6181 aatccgtgag ctgccgttca gttcattaat ttttgcccgc cagtggtttg tggtggggga
     6241 actcctgcag catttgccgc cagaagatcg tattaccccc attgtcggca tgttacaggg
     6301 cgtagtagag aagggcggtg aactgcgtgt tgaagttgcc gataccaacg aaagcaaaga
     6361 gttgctgaaa ttctgccgta aatttactgt tccgctacgc gctgccttgc gcgatgccgg
     6421 ggtgctggcg aactatgaaa cgccgaagcg tccggttgtg catgtattct ttattgcacc
     6481 aggctgctgc tataccggtt actcatacag caacaataat tcgccgttct atatgggcat
     6541 tccgcgcctg aaatttccgg cagaggcgcc gagtcgttcc acgctcaaac tggaagaggc
     6601 atttcatgtg tttattcctg cggatgagtg ggatgaacgc ctggcgaacg ggatgtgggc
     6661 ggtggattta ggcgcttgcc ctggcggctg gacctaccaa ctggtgaagc gcaacatgtg
     6721 ggtttattcc gtcgacaacg gcccgatggc gcaaagtctg atggataccg ggcaggtgac
     6781 gtggctgcgg gaagacggtt tcaaattccg tccgacacgc agcaatatct cctggatggt
     6841 atgcgatatg gttgaaaaac cggctaaagt tgcggcattg atggcgcagt ggctggttaa
     6901 tggctggtgc cgtgaaacca ttttcaatct caaactgccg atgaaaaaac gctacgaaga
     6961 agtatcacac aatctggcgt atattcaggc acagcttgat gaacatggca taaatgctca
     7021 gattcaggcg cggcagttgt atcacgatcg cgaagaagtg acggtgcacg tccgccgcat
     7081 ctgggctgcg gtgggtggtc gtcgcgacga gcgataacag gcaaggccgg ggcgtcgtct
     7141 tcggcctgct accctttccg tcaggctgtt accaaagaag ttgcaacctg gcgctcatca
     7201 gaaataatgt gcgttacctc atccagatgc ccgatgcggg cttcccctga acgattaaat
     7261 ttacttttat caatcaataa caacgattgc gcggcacgtt ttaatagcat cgatttgtaa
     7321 tcagcgttga tcgcattgga gtcccacagt gcgccgctgc tatcgatccc ttcacaagaa
     7381 aaaataaaca gatcgatttc cagcgattta agttgggaaa tcagcgaggg attgacgtaa
     7441 cagccatatt tgcgctcaag tgtgccgccg gaactgatca gttgaatgcg ttcgcgttta
     7501 ccgagttcat agcaaatcgg atggctattg gtgaagacct gaatgttgat gtcaggcaac
     7561 tggcgtgcca gataccagca agttgaactg gcgtctaagg ctatcaccat cccttcttca
     7621 atccacgcga gcgcctcgcg cgcgatatct gctttatgcg cataatggct tttcagcctg
     7681 atgtgaaagg gatcgccact gtcttgattt tgacggtgga tatatttagc gcgtccatga
     7741 ttgcgcagaa ttttaccctg cgtctgtaat tcattgagat cgcgacgaat ggtttcttta
     7801 ctgaccttta gctgttcaga gagagcttcc gtggtcaggc tggtatggtt cagcagcagg
     7861 tcgactatcg cttgctggcg tgccgctttc atatttttca ccccatcatt cgataaccgc
     7921 ccgcgtcatg cgggcgtacc ggtatgagat tacggtgtta cccctttttt taaaagaata
     7981 ttcccgtact tcgctcgttc gcctgtgata acgatcgcaa aggctttttg cgcccgttca
     8041 taaaacgcaa aacgattgat gcggatgatg tcaggacacg gggcttgtag tgaaagcgca
     8101 ttacggtaac gtcgttctac ttcaggatcg agagtgtcac cttctaccgc cgccatcatc
     8161 accagcggcg gtgcataact gtccagttca aataacggga taatcgcctg gagcaagtcg
     8221 ctcaccaaca ggccatcagc gcggatcacc tgcggtccca tcgaatgggc gggaaagtga
     8281 gcatcggaaa aaataatttc atctccatgt cccatctctg ccagcacttt caatagttcg
     8341 ggagaaatta acggcgaaat tgttttcagc atttcacact tcctctataa attcaggttc
     8401 agtttgcggg tagaaataac ggtactgata atgaatctgt gcgcgggctt cttcagggct
     8461 gttaaattcc cctacgccat accaaccgaa cagcgcagct cctgcgacgg tcgtttcggc
     8521 gtcgtcgaga acttttaccg gaatatcaag catattggct ttaatctgat tccacaatgt
     8581 gttgcgactt cctccaccga ctaacaataa ttcagaggcc ttaaagtgcc cgattttttc
     8641 cagcatctgt agattgcgct gtaattgcgc agttaaccct tccagcgccg cgcgatagaa
     8701 atgcccccgc gtggtattaa gcgtcactcc ttgccagcca gcgttctgac acgacaataa
     8761 atcacactgc atttttacgc catccgcgct aggcgcgata agacgagctt cttcaatcaa
     8821 catttgccag ggtgtttcag ccgtccagaa cagttttctc acccattcca gcacgccgga
     8881 tgccagccat tgcatacctg ggttatacaa ccctgcctgg ctatccagtt cgcaggtgga
     8941 accggcgtac tgacttaaca gcgaagtatc aacctgggcg ctacggacca ttaaaatttc
     9001 ccatgtaccg gaagagagca cgggttcatt ttggtcggca ccagcgccaa aaagggcgaa
     9061 ctgggtatcg tgacctgcgg aaatcaccgg tatgccaacg ggtaagccga gcattgctgc
     9121 ggcgctgttc tgtagcgtac caatctgttc acccgcttcc accagacgag ggaagagtcg
     9181 gcgtggaata ccagtggctt gtaaaatttg cggactgaaa tcgcgttgct ggatatccag
     9241 catctggctg gttccggcca tcgtgatatc agtagtgaat tcgccggtta aacggtggtt
     9301 aatcagcgac gaaataaaga accaggcgtg cgtgcgttcc agcagttgtg gatgattttc
     9361 tttcaaccac accaacttat ataacgtatt gaaactaaag gctccgacgc cagaaatagc
     9421 ctgcaaccgc tgtgcggaga tcaactgttc aatattgtcc ataaccgctg ctgttcgcgg
     9481 acatttccag ctaatgatcg gatagagcag attgccttgc ttatctacca gagcgccatc
     9541 cacaccaaag gtggtgacgg cgataccgcg gatgtggcat tcagtcagtt cactattgat
     9601 ttgccgacag caatcagcaa agcgttgcaa aatggcgtct aaagaccact ggtgccaggt
     9661 gttgttttcc atcgcgatat cgctggcatt aggcgttgag gcgcgggcaa caatttttcc
     9721 ctgccgatta accgcgatgg ccctgacatt ggtcgcgcca cagtcgagta ccaggataac
     9781 ttcttgtttc ataatcgctc ctgcaatact tcaatatcca tgccgtgcgc agcccaggca
     9841 gaaggacgat acactttggt ctcttcaacg ttgtgcatac ataccgggat acgcagcatg
     9901 gaggcgagag tgataaagtc agcgccaacg tggccgatgg tcagaacccc atggttagcg
     9961 ccccagttcg ccattaccga gtacacatcc gtaaacggcc ctttaccggt gaggcgcggt
    10021 gcaaaccagg tggttggcca ggttgagttg gtgcgtttgt tgaggatgtc atgcacatcc
    10081 ttcggcaatt ccacgctcca gccttccgcg atttgcagta ccggtcccag gcctttgatg
    10141 atgttgacac gagtcatggt gaacgggacg ccgccttcgg taaggaagcg ggaagagtaa
    10201 ccgccgccac ggaagtattc gtggatcgcc gggcaccatt cggtagcggc gaggcaagcg
    10261 tcagcctctt gctgagagat ttcccagtgc ggcttcatcg tcgggttacc ttcgctgtcg
    10321 cgttgtttac aggaaccgtc cagcgcagca gaacctgagt tgatcaaatg gatgatgccg
    10381 tgttctgcca gtccatcgag tttatgcccc gttacacgct caattgcttc tggtgaccag
    10441 taggtacgca catcggcaaa tacctgagcg gtgccggtga gctggtgacc cattagcatt
    10501 gccacgccgt taagactgtc gttttcggtc gccacgacaa agggttcgcg cacgccattc
    10561 cagtcaaatg aactgttgag gatcgcttcg gcggtgtcac cattgggata ttgatcggtc
    10621 cagtgacgtt gcccctggaa gcccgcagcg atggcgttgt agccaagtga ttcttccacg
    10681 cgaccaatat cggccagttt gctgttgcct tgcatcatgt cgcggataca catcgccatc
    10741 agtaaacttt cgcgcagaac tgcgcggctt tgctcggcat tgcgttgata ctgtttgtta
    10801 ttttcatctt cgccatagcg gaagttttta tcagcccagg ccagtgccat ttccagttcg
    10861 gcttcgtcgt aaatcttctg atcgatacgg cgacgcagtt cggtcatatc caccgcctgg
    10921 actttcattc ccagccagga ttcaaagaag ttgtgatcaa cgatggaacc ggcgataccc
    10981 atcgaaacgc cgcccagcga cagatagctt ttacctttca tgctggcgac ggccaaaccg
    11041 gcgcgggcaa agcgcagcag tttttcttca acatcggcag gaatcgatgt gtcatcggca
    11101 tcctgaacgt catgaccgta aatggagaat gccgggatgc ctttctggct gtgagctgcc
    11161 agagccgctg ccaggtaaac agcgccggga cgttcagtgc cgttaaagcc ccaaatggct
    11221 ttcgggcggg ttggatccat gtcgatggtt tcactgccat agcaccagca aggcgttacc
    11281 gtaatggtga ggcctacatt ctggctgctg aatttttctt cgcaagcagc ggcttcagcc
    11341 atacccgcga tacaggtatc ggaaatgaca cactcgacgg cagctccgca ggcatggcgc
    11401 agtttctcgg tcagcagtgc ggccgtagct ttcgccatat tcattgtttg ttcttcaagc
    11461 gactcacgaa cacccatgcg acgaccgtca ataaccgggc ggataccaat tttcggtaag
    11521 ctgatttttt tcattacaga ttcctcactt tattcggaaa atatgttcag ttagttgccg
    11581 tttgagagcg gaaacgggca aagataaaga tgaccgcgaa gcagagtgcg gggatcagtt
    11641 cagcagtggg gatgttgccc gccgcgtcac tgacaaaacc catgaccgga gtgacaatac
    11701 cgccgccaat aatggtcata acgatgaagg acgaaccgta tttggtgtcc tggccgagat
    11761 tcttaatgcc cagcgagaag attgttgggt actgaatcga cataaaggcg ctgcataaag
    11821 tcagggctat taagcccaca tgaccgccag cgaaggctga gatcaggcac agtgccatag
    11881 cgattaatgc gtaggcggcc aggactttgt gtggtgcgaa gcgactgatg agccaggtac
    11941 cggtgaaacg accaataaag aagcacacca tggttccggt taaatagtta gcggcaaagc
    12001 ctgcagtcat acctggaatt tcttctacag cgtagcgaat caaatagctc cagcaggccg
    12061 tttgtgcgcc aacgtagcag aattgcgcta atactgccca gcgccagtgg cgaatacgcg
    12121 ccaggcgaga aagcgatgcg gagaacgatc cttgtttggc gtcactgtga ttatcactct
    12181 gcaatgccgg gaatttcgtc agcatgatca gcagggcgac cagtaacacg atagccacga
    12241 tgatcatata aggtgtctgt accgataata ccaggctgtg tttatacgca ctcaattgct
    12301 ctggagacat tttatcgaga acgtcttgcg attgatgtgg cacgttagac aaaataagac
    12361 tttgcccaaa gacaaccgcg ataattgcgc caaacgagtt aaatgtttgc gcaagattta
    12421 agcggaagtg accactgctt tccggcccta ataccgtaac aaaagggttt gcggcagttt
    12481 ccagacaacc taatccggct gcaataataa ataggccaac taaaaataag gtgtagttca
    12541 ttatttctgc agcgggccag aataatgcag cgcccagggc atataaaaat aacccagtaa
    12601 t
//
LOCUS       DAJVUP010000126        12475 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.126, whole genome shotgun sequence.
ACCESSION   DAJVUP010000126 DAJVUP010000000
VERSION     DAJVUP010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12475
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.126"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(105..1196)
                     /gene="ychF"
                     /locus_tag="OQQ75_003120"
     CDS             complement(105..1196)
                     /gene="ychF"
                     /locus_tag="OQQ75_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HCS1977359.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV
                     PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH
                     VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
                     ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY
                     LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL
                     LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ
                     GAKEAGKMRAEGKDYIVKDGDVMNFLFNV"
     gene            complement(1313..1897)
                     /gene="pth"
                     /locus_tag="OQQ75_003121"
     CDS             complement(1313..1897)
                     /gene="pth"
                     /locus_tag="OQQ75_003121"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1977360.1"
                     /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK
                     FFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV
                     AKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK
                     LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ"
     gene            2175..2453
                     /gene="ychH"
                     /locus_tag="OQQ75_003122"
     CDS             2175..2453
                     /gene="ychH"
                     /locus_tag="OQQ75_003122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress-induced protein YchH"
                     /protein_id="HCS1977361.1"
                     /translation="MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH
                     GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS"
     gene            complement(2508..4187)
                     /gene="dauA"
                     /locus_tag="OQQ75_003123"
     CDS             complement(2508..4187)
                     /gene="dauA"
                     /locus_tag="OQQ75_003123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HCS1977362.1"
                     /translation="MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAI
                     PLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVIIYPVSQQFGL
                     AGLLVAALLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM
                     AHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCA
                     VMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIR
                     TLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATA
                     AIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE
                     AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP
                     VVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAF
                     QRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPISGRLAFFPNRRAAMADL"
     gene            complement(4312..5259)
                     /gene="prs"
                     /locus_tag="OQQ75_003124"
     CDS             complement(4312..5259)
                     /gene="prs"
                     /locus_tag="OQQ75_003124"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HCS1977363.1"
                     /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI
                     NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN
                     LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
                     VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP
                     LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH"
     gene            complement(5410..6261)
                     /gene="ispE"
                     /locus_tag="OQQ75_003125"
     CDS             complement(5410..6261)
                     /gene="ispE"
                     /locus_tag="OQQ75_003125"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HCS1977364.1"
                     /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE
                     LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG
                     GLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL
                     TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR
                     FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLS
                     PLHRAML"
     gene            complement(6261..6884)
                     /gene="lolB"
                     /locus_tag="OQQ75_003126"
     CDS             complement(6261..6884)
                     /gene="lolB"
                     /locus_tag="OQQ75_003126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HCS1977365.1"
                     /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ
                     DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN
                     VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI
                     TYSQNGKNWKVVYGGYDTKTHPAMPANMELTDGGQRIKLKMDNWIVK"
     gene            7098..8354
                     /gene="hemA"
                     /locus_tag="OQQ75_003127"
     CDS             7098..8354
                     /gene="hemA"
                     /locus_tag="OQQ75_003127"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041689438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HCS1977366.1"
                     /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG
                     VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR
                     VASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGA
                     SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER
                     AQILADEVGAEVIALSEIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL
                     VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA
                     WLRAQSASETIREYRSQAEHVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP
                     TKSLQQAARDGDNERLNILRDSLGLE"
     gene            8396..9478
                     /gene="prfA"
                     /locus_tag="OQQ75_003128"
     CDS             8396..9478
                     /gene="prfA"
                     /locus_tag="OQQ75_003128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HCS1977367.1"
                     /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ
                     LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELRKAKEKSEQLEQQLQVLLLP
                     KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK
                     EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN
                     PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA
                     RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME
                     GKLDMLIEPIIQEHQADQLAALSEQE"
     gene            9478..10311
                     /gene="prmC"
                     /locus_tag="OQQ75_003129"
     CDS             9478..10311
                     /gene="prmC"
                     /locus_tag="OQQ75_003129"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1977368.1"
                     /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE
                     TQLTDEQCQQLDALLTRRRDGEPIAHLTGGREFWSLPLFVSPATLIPRPDTECLVEQA
                     LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN
                     IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV
                     HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY
                     Q"
     gene            10308..10700
                     /locus_tag="OQQ75_003130"
     CDS             10308..10700
                     /locus_tag="OQQ75_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB family protein"
                     /protein_id="HCS1977369.1"
                     /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV
                     PPVVDTVLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ
                     ARIIAFPLALVVLYIIIKLATTKVPLLG"
     gene            10704..11513
                     /locus_tag="OQQ75_003131"
     CDS             10704..11513
                     /locus_tag="OQQ75_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HCS1977370.1"
                     /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL
                     AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLG
                     AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNI
                     SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI
                     RDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAHKHIVLH"
     gene            11549..12403
                     /gene="kdsA"
                     /locus_tag="OQQ75_003132"
     CDS             11549..12403
                     /gene="kdsA"
                     /locus_tag="OQQ75_003132"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HCS1977371.1"
                     /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV
                     TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA
                     QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
                     EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR
                     AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG
                     FEELDTSK"
BASE COUNT         3114 a         3161 c         3241 g         2959 t
ORIGIN      
        1 cattaccgac tcggtgaaat gaaaaatcca cgcaattgcg tggattttat atacttttgc
       61 gctcttcatg agatttagcg aaacctcatg agacaataaa ttaattagac gttgaaaagg
      121 aagttcatca catcgccatc tttcacgatg taatctttac cttctgcacg cattttgcct
      181 gcttctttcg cgccttgttc acctttgtaa gtgatgaaat cttcaaacga gatggtttgt
      241 gcacggataa agcctttttc aaaatcagta tggattttgc ccgctgcctg cggcgcggtt
      301 gctccaaccg gaatggtcca tgcacgcact tctttcaccc cagcggtgaa gtaagtttgc
      361 aggttcagca gcttataacc ggcacggatc acacggttca ggcccggctc ttccagccca
      421 agctcctgca taaactcgtc acgttcttcg tcgtccagtt cggcaatgtc tgcttcaaca
      481 gcagcacaaa ccggaaccac aacagaacct tctttcgccg cgatttcacg cacctggtca
      541 agatatgggt tgttttcaaa accgtcttcg ttgacgttgg cgatgtacat tgttggtttc
      601 agcgtcagga agctcaggta acgaatagcc gctttctctt cagcgcttaa atccagcgcg
      661 cgcagcatac ctgcattttc caactggggc aggcattttt ccaggaccgc cagctcagct
      721 ttcgcgtctt tatcgccacc tttggctttc ttctgtacgc gatgaatcgc acgttcgcag
      781 gtgtcgaggt ctgccagcgc cagttcggtg ttgataactt caatatcgtc agccgggtta
      841 actttgccgg aaacgtgaat gatgttgtca ttttcaaagc agcgaacaac gtgaccgatc
      901 gcttcggttt cacggatgtt ggtcaggaac tggttaccca gaccttcgcc tttcgatgcg
      961 ccttttacca gaccggcgat atcgacaaat tccatggtcg tgggaagcgt acgctgcggt
     1021 tttacgattt cagccagttg atccaggcga ggatcaggca ttggtacgac gcctgtgttc
     1081 ggctcaatgg tgcagaatgg aaagttggcc gcttcaatac cggctttggt cagcgcgttg
     1141 aacagggtag atttcccgac gttgggcaaa ccgacgatac cgcatttgaa tcccatgatt
     1201 taaatcacct taatatctta ataatcaacc tgttattgct aacagattgc agaaatggaa
     1261 ataactttgc ctattataca cggcactcgg caaaaatgcc gcagacaacg acttattgcg
     1321 ctttaaaggc gtgcaatcgg ttcgttgctt tggtcaagcc atctgtaaac cacatttcag
     1381 tacaacgcgc cgcttcgtca atggcttcat caattaactt ctgttcacta acaggcggtt
     1441 tgcctaacac aaaaccgaca actttatttt tatcgcccgg atgaccgatt ccgatgcgta
     1501 aacggtgaaa gttagggtta ttacccaatt tactgatgat gtctttcagt ccattgtgac
     1561 caccatggcc accgcccaat ttaaatttgg cgacgccagg aggcagatcc agttcgtcgt
     1621 gggccaccag aatttcgtcc ggattaatgc ggaaaaaact ggccatcgcc gcaacggctt
     1681 tgccgctgag attcataaat gtagtcggga ctaacaggcg gacatcttcg cctccaagag
     1741 tgactcgcga agtataacca aagaatttag cctcttcgcg cagcggagcg cgcaaacgct
     1801 ctgccagtaa gtcaacgaac caggcaccag cattatgtcg cgttgcggcg tattcagcac
     1861 cggggttcgc caggccgaca atcaatttaa tcgtcacgtt tttttgtcct gagtgtgtac
     1921 ataactggcg cgtagtttac tggttgcgac cccgcttgac aaaaaactgc gtatcaaatg
     1981 cagataacgt aataattgcc tgagtgggct attagaaagt caaggtgttc aggcgtttat
     2041 ttgtaaagtt ttgttgaaat aagggttgta attgtgatca cgcccgcaca taacccacag
     2101 ggtgttgtct atactttaca cataaggaag aggggtattc cctgttacaa cccagaaagt
     2161 tccggaggtg acatatgaaa cgcaaaaacg cttcgttact cggtaacgtg ctcatggggt
     2221 tgggtctggt ggtaatggtg gtcggcgtgg ggtattcaat cctcaaccag ttaccacagt
     2281 ttaatatgcc ccagtatttc gcacatggtg cagtgctaag tattttcgtc ggtgccattc
     2341 tctggctggc gggtgcccgt gttggcgggc atgaacaggt gtgcgaccgt tactggtggg
     2401 ttcgccacta tgacaaacgt tgccgccgta gcgataatcg ccgtcatagc taacaaataa
     2461 tgcagtttgc tgaccagtca gtttgcgctg actggtcaat ctcgtactta taaatccgcc
     2521 atcgccgcgc gacgattcgg gaagaacgcg aggcgtcccg agattggttg aatgcctgcg
     2581 cgagccatag tgcgcagtgg ctggaattcc acgttgcaca cgcgcagttc acatccttcg
     2641 ggcagacgct tcacaaaacg ctggaacgca tcaagaccac cagcatcaag taccggaacg
     2701 gcatcccact tcagaatcac aatccgtttg ccttcaagac gtgactccag gtccgtgaac
     2761 aagccttcag cagcagcaaa aaacagcggg ccaataacgc gcagtaccag aacatcgtct
     2821 ggaacatcta cgactaccgg tgccaggcga gtcatacgtg cgatacgacg cataaacagc
     2881 agcgatgcca gcacgatccc cacgctgatg gcaataacca tatcaaacag cacggtcagc
     2941 gacatgcaca gcagcatgac aatgatgtca tctttcggtg catgacgcag caagtcgacc
     3001 actttatgcg cttcactcat gttccacgcc accatcaaca gcagggctgc catagcggaa
     3061 agcggcagcc aggagagcag cggtgccagt accagcaggg caagaataac cagaatagag
     3121 tggatcaccg ctgagatagg ggaagttgcc ccggcacgga cgttagcggc agaacgcgcg
     3181 atggcagctg tagcggtaat accaccaaag aatggagcga taatattccc cagtccctgt
     3241 ccaaccagtt cgctgttcgc cttgtgtttc gtcccggtca taccatccag taccacggcg
     3301 cagagcagag attcgattgc gccgagcatt gccattgaga atgccgcagg cagcagtgtg
     3361 cgaatagaat cccaggttag cgtgaattct gaattaggca gatcccacgg cagcaccagt
     3421 tgcggcagca gttgcggaat accgttaccc tgagaaccat cggccaggac gtagtggaat
     3481 tgcgaaccga tggtagcaac atgtccgccg agcaggttaa caatccccat caccgcgcaa
     3541 ccagccagca aggccggaag gtgaccgggt aaacgaatgc ccagacgcgg ccaaaaaaca
     3601 agaataccta gcgtcacaat gccaatggca gcatcaccca cattaatggt cggcagcgcc
     3661 ataaataatg cgccgacttt ttgtagataa tgttccggga catgggccat ttgcagaccg
     3721 agaaaatctt taatctgcat ggtaccgatg gtgatcccga tacccgaggt gaaacctaag
     3781 gtgacggaaa ccggaatata ctcaatcagg cgaccaaagc gtgccagacc catcagaatc
     3841 aaaaagatcc ccgacagcaa ggccgcaacc agcagtcctg ccagtccaaa ctgttgcgac
     3901 acgggataga taattaccac aaatgccgca gtcggaccgg aaacgctaaa gcgtgaccca
     3961 cccgtcagag caatgacaat ccccgcaaca gctgcggtat ataaaccgta ctggggtgcc
     4021 acaccactac caatagccaa cgccatcgcc agcgggatag caataatccc gacggttatc
     4081 ccggcaatca ggtcacgggt aaaccgtgcg gcagtatatt tttctttcca gcaagcgtcg
     4141 atcagagcgc ggaaaggcat cacatgtgag gaaaatattt tgttcacaat aatgtttcat
     4201 ccgtgagcgc atcatctgtc aactaaatgg caggtgaagg aggcataggt catacaaatg
     4261 gatattacag acaaaaaaac ccgccgcagc gggtctttga gccgggttcg attagtgttc
     4321 gaacatggca gagatcgatt cttcgttgct gatacgacga atcgcttcgg ccagcatacc
     4381 tgacagggtc agagtacgca cgttcggcag tgatttgatt tcatcgctca gcggaatggt
     4441 atcgcagaca acgacttcat caattacaga gttacgcagg ttgttcgccg cgttgccaga
     4501 gaagatcggg tgagtcgcgt acgcaaatac acgtttagca ccacgttctt tcagagcttc
     4561 agcagcttta cacagcgtac cgccagtgtc gatcatatca tcgaccagta cgcagtcacg
     4621 acctgcaacg tcaccgatga tatgcatcac ctgggaaacg ttcgcacgcg gacgacgttt
     4681 gtcgatgatt gccatatcgg tatcgttcag cagcttagcg atagcgcggg cacgcacaac
     4741 gccgccgatg tccggagaaa ccacaattgg gttatccaga ttcagctgca gcatgtcttc
     4801 cagcaggatc gggctaccaa atacgttatc aaccggaacg tcgaagaaac cctgaatctg
     4861 ttcagcgtgc agatccactg tcagcacacg gtcaacaccg acgctggaga ggaagtctgc
     4921 aaccactttc gcagtgattg gtacacgagc ggaacggacg cgacggtcct ggcgcgcata
     4981 gccaaagtag gggataacag cggtgatacg acctgcggaa gcacgacgca gggcatcaac
     5041 cataacgact aattccatca ggttgtcgtt agtaggggca caagtggact ggatgatgaa
     5101 aatatcacca ccgcgtacat tttcattaat ttgtacgctg acttcgccat cgctaaagcg
     5161 acctacagcg gcgtcgccga gtgaagtgta caggcggttg gcaatacgtt gtgctagttc
     5221 cggggtggcg ttaccagcaa aaagcttcat atcaggcacg agaagaacct caggcatgcg
     5281 tccattggtg gaaagaatct gccgaaaact gtgcgggcca ggcatgatcc tttccaggca
     5341 gtgtattaaa gagcgcgatg caacgtctgg aacaaggtga cgttgtcacc gaaactcagc
     5401 ttgcccggct taaagcatgg ctctgtgcaa tggggaaaga ttaacgcctt tcgccacaaa
     5461 gccattgagc cattccgggg cttgctctag cacctggcgg gcttcagact ctgtatcaaa
     5521 ttcagcaaag acacaggccc ctgtcccagt caggcgcgac ggggcgtatt ctaacagcca
     5581 ggaaagcacc gcatcaacct cgcgaaaacg ttttcttgcg ataacctcgc aatcattgct
     5641 gaattcacat tttagcaacg tttctattga cctttttggc gtattgcgcg ggagttcagg
     5701 atctttaaaa atcaccggag tcggaatact tacaccaggg tgcgccacca gataccactt
     5761 ctctggcgga tccaccggcg ttagtatttc accaacgcct tcggcaaacg cggcatgccc
     5821 ccgaacaaag acaggaacat ctgcgcccag cgtcagcccc atttccgcca gctcatccat
     5881 gcttagcccg cattgccaga gatgatttaa tgccaccagg accgtcgcgg cattggatga
     5941 accaccgccg agaccgccgc ccatcggcaa acgcttgtca atgctgatat tcgcaccgct
     6001 tcccgtcgga agacgcccgc tgtctgccgc agttttcatc aacaatcgcg ctgcgcgaac
     6061 gatcaggtta tcttcatgtt ccacgccttc aacgggcgtt aacagacgaa tatccccatc
     6121 gtcacgaagc tcaatgctga tggtgtcgcc gtaatcaaga aactgaaaca gcgtttgcag
     6181 cgtgtggtaa ccatccgcac gctgaccggt aatgtataaa aacagattaa gttttgccgg
     6241 agagggccac tgtgtccgca ttatttcact atccagttat ccatttttaa cttgatgcgt
     6301 tgaccaccgt cggtgagttc catattggct ggcatcgcag gatgcgtttt ggtgtcataa
     6361 ccaccataaa caaccttcca gtttttgcca ttctggctgt aggtaatttc gctcaggcgg
     6421 tactggtcgt ccagtttgta gtcggttgca tcacccggta aacctaaaat ccactggcgc
     6481 aagctgttga gcggaattgg cattccggtc aatttgccaa tcatctcttc ggcgtcatcg
     6541 gcggtataac gctgaccttt attgtcgact aactgcacgt tacccggttg agcattcagc
     6601 tccagttccg tgctgcccaa tgggttagtg agcagcagac ggtagcgatc ctggccggtt
     6661 tgctgccaga aaaagcgggc gtacactttt tgttggtcag aaatataagc gaacgcgccg
     6721 cgagtctgat actgattaag attgcgcacg tcttgctgat gctgacgcca ttgtggcgaa
     6781 tccgggcttt tgccaggacc tttgggcgtg gtaacggaac aggcagtgag cacaagagca
     6841 gccagcggta gcaggcggat aagacgaaaa tcgggcaggg gcatagtgat gacaagtcct
     6901 tgagatacgt tgcagttata acccttaatg ctagcgttac cgtccgctat cgtctatgtt
     6961 caagttgtct taattgccag aatctaacgg ctttcggcaa ttactccaaa agggggcgct
     7021 ctcttttatt gatcttacgc atcctgtatg atgcaagcag actaactcta tcaacgttgg
     7081 tattatttcc cgcagacatg acccttttag cactcggtat caaccataaa acggcacctg
     7141 tatcgctgcg agaacgtgta tcgttttcgc cggataagct cgatcaggcg cttgacagcc
     7201 tgcttgcgca gccgatggtg cagggcggcg tggtgctgtc gacgtgcaac cgcacggaac
     7261 tttatcttag cgttgaagag caggataacc tgcaagaggc gttaatccgc tggctttgcg
     7321 attatcacaa tcttaatgaa gaagatctgc gtaaaagcct ctactggcat caggataacg
     7381 acgcggttag ccatttaatg cgtgttgcca gcggcctgga ttcactggtt cttggggagc
     7441 cgcagatcct cggtcaggtt aaaaaagcgt ttgccgattc gcaaaaaggt catatgaagg
     7501 ccagcgaact ggaacgcatg ttccagaaat ctttctctgt agcgaaacgc gttcgcactg
     7561 aaacagatat cggtgccagt gctgtgtctg tcgcttttgc ggcttgtacg ctggcgcggc
     7621 agatctttga atcgctctct acggtcacag tgttgctggt aggcgcgggc gaaaccatcg
     7681 agctggtagc gcgtcatctg cgcgaacata aagtacagaa gatgattatc gccaaccgca
     7741 ctcgcgaacg tgcccaaatt ctggcagatg aagttggcgc ggaagtgatt gccctgagtg
     7801 agatcgacga acgtctgcgc gaagccgata tcatcatcag ttccaccgcc agcccgttac
     7861 cgattatcgg gaaaggcatg gtggagcgcg cattaaaaag tcgtcgtaac caaccaatgc
     7921 tgttggtgga tattgccgtt ccgcgcgatg ttgagccgga agttggcaaa ctggcgaatg
     7981 cttatcttta tagtgtggac gatctgcaaa gcatcatttc gcacaacctg gcgcagcgta
     8041 aagccgcagc ggttgaggcg gaaactattg tcgctcagga aaccagcgaa tttatggcgt
     8101 ggctgcgagc acaaagcgcc agcgaaacca ttcgcgagta tcgcagccag gcagagcacg
     8161 ttcgcgatga gttaaccgcc aaagcgttag cggcccttga gcagggcggc gacgcgcaag
     8221 ccattatgca ggatctggca tggaaactga ctaaccgctt gatccatgcg ccaacgaaat
     8281 cacttcaaca ggccgcccgt gacggggata acgaacgcct gaatattctg cgcgacagcc
     8341 tcgggctgga gtagcagtac atcattttct ttttttacag ggtgcattta cgcctatgaa
     8401 gccttctatc gttgccaaac tggaagccct gcatgaacgc catgaagaag ttcaggcgtt
     8461 gctgggtgac gcgcaaacta tcgccgacca ggaacgtttt cgcgcattat cacgcgaata
     8521 tgcgcagtta agtgatgttt cgcgctgttt taccgactgg caacaggttc aggaagatat
     8581 cgaaaccgca cagatgatgc tcgatgatcc tgaaatgcgt gagatggcgc aggatgaact
     8641 gcgcaaagct aaagaaaaaa gcgagcaact ggaacagcaa ttacaggttc tgttactgcc
     8701 aaaagatcct gatgacgaac gtaacgcctt cctcgaagtc cgagccggaa ccggcggcga
     8761 cgaagcggcg ctgttcgcag gcgatctgtt ccgtatgtac agccgttacg ccgaagcccg
     8821 ccgctggcgg gtagaaatca tgagcgccag cgagggtgaa catggtggtt ataaagagat
     8881 catcgccaaa attagcggtg atggtgtgta tggtcgtctg aaatttgaat ctggcggtca
     8941 tcgcgtgcag cgtgttcctg ctacggaatc gcagggtcgt attcatactt ctgcttgtac
     9001 cgttgcggta atgccagaac tgcctgacgc agaactgccg gacatcaacc cagcagattt
     9061 acgcattgat actttccgct cgtcaggggc gggtggtcag cacgttaaca ccaccgattc
     9121 ggcaattcgt attactcact tgccgaccgg gattgttgtt gaatgtcagg atgaacgttc
     9181 acaacataaa aacaaagcga aggcgctttc agtgctcggt gctcgcatcc acgctgctga
     9241 aatggcaaaa cgccaacagg ccgaagcgtc tacccgtcgt aacctgctgg ggagtggcga
     9301 tcgcagcgac cgtaaccgta cttacaattt cccgcagggg cgcgttaccg atcaccgcat
     9361 caacctgacg ctctaccgcc tggatgaagt gatggaaggt aagctggata tgctgattga
     9421 accgattatc caggaacatc aggccgacca actggcggcg ttgtccgagc aggaataatg
     9481 gaatatcaac actggttacg tgaagcaata agccaacttc aggcgagcga aagcccgcgg
     9541 cgtgatgctg aaatcctgct ggagcatgtt accggcagag ggcgtacttt tattctcgcc
     9601 tttggtgaaa cgcagctgac tgacgaacaa tgtcagcaac ttgatgcgct actgacacgt
     9661 cgtcgcgatg gtgaacccat tgctcattta accggggggc gagaattctg gtcgttgccg
     9721 ttatttgttt cgccagcgac cttaattccg cgcccggata cggagtgtct ggtggagcag
     9781 gcactggcgc ggttgcctga acaaccttgc cgtattcttg atctcgggac gggtaccggg
     9841 gcgattgcgc ttgcgctggc tagcgagcgc ccggactgcg aaattatcgc tgtagatcgt
     9901 atgcctgatg ctgtctccct ggcacaacgt aatgcccagc atctggcgat caaaaatatc
     9961 cacattctgc aaagcgactg gtttagcgcg ctagccgggc agcagtttgc gatgattgtc
    10021 agcaatccgc cgtatattga cgagcaggac ccacatcttc aacaaggcga tgtccgcttt
    10081 gagccgctca ctgcgctggt tgcggcagac agtggaatgg cagacatcgt gcatatcatc
    10141 gaacagtcgc gtaacgcgct ggtatccggc ggctttctgc ttctggaaca tggctggcag
    10201 cagggcgaag cggtgcgaca agcatttatc ctcgcggggt atcatgacgt cgaaacctgc
    10261 cgtgactatg gtgataacga gcgcgtaacg ctcggccgct attatcaatg acaagttttt
    10321 ctacactgct tagtgttcat cttattagta tcgcgctttc tgttgggcta ttaaccttac
    10381 gtttctggct acgttatcag aagcatccac aggcatttgc tcgctggacg cgcattgtgc
    10441 cgccggttgt cgatacggtg ttattgttaa gcggcattgc gttgatggct aaagcgcaca
    10501 tcctgccatt ttccgggcag gcacagtggc tgactgaaaa gctgtttgga gttatcattt
    10561 atatcgtttt gggttttatt gcactcgatt atcgtcgtat gcacagtcag caggcgcgca
    10621 ttattgcctt cccgctggcg ttggtggtgc tgtacatcat cattaaactc gccaccacaa
    10681 aagtaccgtt actggggtaa gtcatgagat cgttagctga tttcgaattt aataaagcgc
    10741 cattgtgcga aggcatgatc ctggcttgcg aagcaatccg ccgcgatttt ccctcgcaag
    10801 atgtttacga cgaactggag cgtctcgtta gtctggcgaa ggaagaaatc agccagcttc
    10861 tgcctttaga agagcagctg gaaaaactga tcgcgctgtt ttacggcgac tggggattta
    10921 aagcctcacg cggcgtttat cgtctttccg atgcattatg gctggaccag gtgttaaaga
    10981 atcgacaggg cagtgcggta tcattaggtg cggttttatt atgggtcgcg aatcgtctcg
    11041 atttgccgct gctgccggtg attttcccta cgcagctgat attgcgcatt gaatgtccgg
    11101 atggcgaaat ttggctgatt aatcctttta acggtgaatc gttaagcgaa catatgctgg
    11161 acgtatggtt aaagggaaat atcagcccgt cggcggaact gttttatgaa gaccttgatg
    11221 aagctgataa cattgaggta atccgcaaat tgctggatac actcaaagcc tcgttgatgg
    11281 aagaaaatca gatggagctg gcgttacgca ccagcgaagc tttattacaa ttcaaccctg
    11341 aagatcccta tgaaattcgc gatcgcgggt tgatttatgc gcaactggat tgcgaacacg
    11401 ttgcgttgaa cgatttaagt tatttcgttg aacagtgtcc ggaagacccg atcagcgaaa
    11461 tgatccgtgc gcaaataaat aacatcgcgc ataaacatat tgtgctgcat taattaatcg
    11521 acattttact caagattaag gcgatcctat gaaacaaaaa gtggttagca ttggcgacat
    11581 caacgtagca aatgacctgc cgttcgtact gtttggcggt atgaacgtgc tggaatctcg
    11641 cgatctggcg atgcgcattt gcgagcacta cgtaactgtg acccagaaac tgggtatccc
    11701 ttacgtgttc aaagcctctt ttgacaaagc caaccgctcc tccatccact cttatcgtgg
    11761 accgggcctg gaagaaggga tgaaaatctt ccaagagttg aagcagactt ttggcgtgaa
    11821 aattatcacc gacgttcacg aaccaagtca ggcacagccc gttgctgatg tcgtggatgt
    11881 gattcagttg ccggcgtttc ttgctcgcca gactgacctg gttgaagcca tggcgaaaac
    11941 cggtgcggta attaacgtca agaaaccaca gtttgtcagc ccgggacaga tgggtaatat
    12001 cgttgataaa ttcaaagaag gcggcaacga aaaagtgatt ctttgcgatc gtggtgctaa
    12061 cttcggctat gacaacctgg ttgtcgatat gctgggcttc agcattatga agaaagtgtc
    12121 tggtaactcg ccggtgattt tcgacgtgac ccacgcactg caatgccgcg atccgtttgg
    12181 cgcagcttcc ggtggtcgtc gtgctcaggt ggctgagctg gcacgagccg gtatggcggt
    12241 aggtctggcg gggctgttta ttgaagcgca tccggatccg gaacatgcga aatgtgatgg
    12301 tccatccgcg ctgccgctgg ctaaactgga accgttcctc aagcagatga aagcgattga
    12361 tgatctggtg aaaggtttcg aagaactgga taccagcaag taatcttttt tgcttgaaaa
    12421 ataaagtctt agcgttctgc gttaagactt ttttcatggg tgccagatac aaaaa
//
LOCUS       DAJVUP010000127        12395 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.127, whole genome shotgun sequence.
ACCESSION   DAJVUP010000127 DAJVUP010000000
VERSION     DAJVUP010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12395
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.127"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(31..819)
                     /gene="phoH"
                     /locus_tag="OQQ75_003133"
     CDS             complement(31..819)
                     /gene="phoH"
                     /locus_tag="OQQ75_003133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HCS1977372.1"
                     /translation="MGRQKAVIKARREAKRVLRRDSRSHKQREEESVTSLVQMSGVEA
                     IGMARDSRDTSPILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK
                     DVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIG
                     KVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLP
                     RGVCSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS"
     gene            complement(1441..2712)
                     /gene="efeB"
                     /locus_tag="OQQ75_003134"
     CDS             complement(1441..2712)
                     /gene="efeB"
                     /locus_tag="OQQ75_003134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HCS1977373.1"
                     /translation="MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGT
                     LSPDARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLT
                     QGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM
                     TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHA
                     ARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQ
                     FRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLAN
                     PRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALE
                     EYVKPIGGGYFFSLPGVKDANDYLGSALLRV"
     gene            complement(2718..3845)
                     /gene="efeO"
                     /locus_tag="OQQ75_003135"
     CDS             complement(2718..3845)
                     /gene="efeO"
                     /locus_tag="OQQ75_003135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HCS1977374.1"
                     /translation="MTINFCRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPM
                     TITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMT
                     CGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA
                     IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHR
                     LEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKI
                     SGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKY
                     RTKDGFETYDKLTDADRNALKGPITAQAEDLAQLRGVLGLD"
     gene            complement(3903..4731)
                     /locus_tag="OQQ75_003136"
                     /pseudo
     CDS             complement(3903..4731)
                     /locus_tag="OQQ75_003136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309290.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
     gene            complement(5400..6908)
                     /gene="putP"
                     /locus_tag="OQQ75_003137"
     CDS             complement(5400..6908)
                     /gene="putP"
                     /locus_tag="OQQ75_003137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HCS1977375.1"
                     /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP
                     FVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE
                     YNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY
                     ETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEV
                     IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT
                     WMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAI
                     LAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAAN
                     PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWL
                     GLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES"
     gene            complement(7067..7276)
                     /locus_tag="OQQ75_003138"
     CDS             complement(7067..7276)
                     /locus_tag="OQQ75_003138"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977376.1"
                     /translation="MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQ
                     LTFLKGATAKNVRECNLMKNSVAEH"
     gene            7331..11293
                     /gene="putA"
                     /locus_tag="OQQ75_003139"
     CDS             7331..11293
                     /gene="putA"
                     /locus_tag="OQQ75_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional transcriptional regulator/proline
                     dehydrogenase/L-glutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1977377.1"
                     /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL
                     ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRP
                     ETEAVSMLLEQARLPQLVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQ
                     EGVALMCLAEALLRIPDKATRDALIRDKISNCNWQSHIGRSPSLFVNAATWGLLFTGK
                     LVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLE
                     EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH
                     PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPE
                     LAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGL
                     EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQY
                     EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTYETLLAYLVRRLLENGANTSF
                     VNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL
                     ANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPR
                     EVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAI
                     AEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS
                     VLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGS
                     TEVATLLQCNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG
                     QRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI
                     QTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYN
                     RNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF
                     GGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNAL
                     REWAANRPELQALCTQYGELAQAGIQRLLPGPTGERNTWTLLPRERVLCIADDEQDAL
                     TQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDS
                     DQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
                     "
     gene            complement(11333..11971)
                     /gene="rutR"
                     /locus_tag="OQQ75_003140"
     CDS             complement(11333..11971)
                     /gene="rutR"
                     /locus_tag="OQQ75_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator RutR"
                     /protein_id="HCS1977378.1"
                     /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI
                     AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL
                     EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ
                     HLIFIIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR"
     gene            12259..>12395
                     /locus_tag="OQQ75_003141"
     CDS             12259..>12395
                     /locus_tag="OQQ75_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
                     /protein_id="HCS1977379.1"
                     /translation="MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDF
                     AL"
BASE COUNT         2993 a         3433 c         3130 g         2839 t
ORIGIN      
        1 gttcgcccgg gctctgcacc gataacacac ttaactgtat gcatgcagcg tacgttggca
       61 aagtgccgaa cgtacgcaat cctcttttcc gaaccggacg atcccaacca tttcatcttc
      121 ttcgaaacgt tccagcgcgt cacttaatcc ggagcacacg ccgcgaggca aatcgcattg
      181 cgtgatatca ccgttgacga taaccgtcac gttctccccg aggcgggtta aaaacatttt
      241 catttgcgcg gcagtcacat tctgcgcctc gtcaagaatg acgactgcat tttcaaaggt
      301 acgtccacgc atataggcga acggcgcgat ttccaccttc cctatttccg gtcgcaggca
      361 gtactgcata aaggaagccc ctaagcgccg gaccagcacg tcgtagaccg ggcgaaaata
      421 gggagcaaac ttttctgcga tatcaccagg taagaagcca agatcttcat cggcttgcag
      481 aactggacgg gtgacgataa tcctgtcgac atccttatgt atcagggcct ctgccgcttt
      541 tgctgcgctg atccaggttt ttccgcaccc ggcttcgccc gtggcgaata tcagctgctt
      601 actctcaata gccttcagat agtgcaattg cgcttcattt cgcgcgagga tgggcgaggt
      661 atcgcgactg tcgcgggcca taccaatggc ttctacgccg ctcatctgca caagcgaggt
      721 gaccgattct tcttcacgct gcttatggct gcgcgaatcc cgtctcagca cacgttttgc
      781 ctcgcgacga gctttgatca ctgctttttg tcttcccatg gagagcacct tgagttgttt
      841 gtattcatca cacgcgccgt tggcagcgcg attatgcgca cgaacatcag agggttggct
      901 tccttgtaag ccatagtttg cttttggata aaatgccgaa aaacggctac gcgcaccgtt
      961 tacggcgtcg gtaacacatg aaaagaaagg atgaggttga aaatgcaaag tgacgagatg
     1021 actaccggag gagaaaactc cgcgagtggt ggcgcgttga ttatctaaaa catgtccagt
     1081 acaggacgtt accatccgcg atctccatag tgactgacta tcactgccgg gaacttccgc
     1141 tgctacttaa taagtacaac agatctcgca ttttattgca acaatatatt tacttatatt
     1201 taactataaa acactatttc agtgacatta gtttctactg gaaagatgac agagtgatga
     1261 cagtgatgaa aaaagctgtg tgctttcagc aggatttgca tcaggcatca gtgcacgatc
     1321 gccggatgcg gcgtgaacgc cttatccagc ctaccaaacc cgcactgatt gtaggcatga
     1381 taagacgcgc aagcgtcgca tcaggcatct gcgcacaaat gccttatccg cctaaaaaca
     1441 ttaaacccgc aataacgcgc ttccgagata atcgttcgcg tccttcactc ccggcagcga
     1501 aaaaaaataa ccgccgccga taggtttaac gtattcctcc agcgcttcgc cattgagcct
     1561 tttttgtact gtcaggaagc ctttttccag atcgtgttgg tagcagacaa acagcaaccc
     1621 catatccagt tgtccggagt tggtgacccc caacgaataa ctgtagccgc gacgcagcat
     1681 caggctggac tcactctccg ccgtgcgggg attcgccagc cggatatggc tgtccagcgc
     1741 gatcaccttc ccttccgggt cgctggcgta atcaggcaca tcatgctcat gctgcattcc
     1801 cagcggcgca ccggtttgct tatcacggcc aaaaatcgtc tgctgttctt tcagcggcgt
     1861 tctgtcccaa aattccactc gaaactgaat caagcgtact gcctgatagc tgccaccgat
     1921 tgtccacgca ggctcctgct gatctgccgt tacccacacc actttttgca tcaacttatc
     1981 attctggcta tcgggattgg cagtgccgtc tttaaagccc agcaaattaa tcggcgtctc
     2041 tttgccttta ctacgcgctg cgtgatcgga aataaaccct tcccgcttcc agcgcacgct
     2101 gagcaaatcc ggcgtgtgtt tgatgatatc gcgcagcgca tggatcaccg tgtcctgggt
     2161 gttggcgcaa atttgtagca acacatcacc atggcataac gccgcatcca gcgagtcgtt
     2221 ggggaaacgc gtcatcttct gcaacttttt cggcatctgt ggcgcaaggc caaaccgctc
     2281 atcaaacaat gagtgaccca ccgataacgt gatggtgaga ttatcgggcg caatgtagcc
     2341 gccaagaatg ccggaatcga gtggtggcag gcgcggattt ggcgtttctg gtgccgctcc
     2401 gccctgagtc agaaaagcaa aacgctgagt caacaagcga aacaaccgtt caagatcggc
     2461 tttatcgctg gcaagcacat caaacgccac cagcatcatt gcggcctgtt gtggcgtcag
     2521 gatccctgcc tgatgctcac cataaaacgg ctgtttctca ttgcgtgcat ccggtgaaag
     2581 cgtacccggc gcactttgcg ttttttgtgc atgagcgacc ggacaacttc ccgccagcgc
     2641 cagcgcacct atcactttca gtaaacgtcg gcgtgacggt tcattcacgc cgttttcatc
     2701 tttatactgc ataacgctta atccagtccc agcacaccgc gaagttgcgc cagatcttcc
     2761 gcctgcgcag taatcggtcc tttcagtgca ttccggtcgg catcggtcaa tttgtcgtag
     2821 gtttcaaaac cgtctttagt acggtatttc gccagaatgg tatcgacctt tttaaagttg
     2881 gcatcgactt ttgccagcag ttccgggttg gctttttgca gttgtggacg cagcaaatcg
     2941 acaattttct gcgagccttc aacgttagcc tggaaatccc acagatcggt gtggctgtag
     3001 cgatcttctt caccgctaat tttgctggct gccacttcct caatcagtcc ggctgcgccg
     3061 ccgaccactt ttgaaggtgg gaaagccagt tcactgatgc gtttttgcaa atcgaccaca
     3121 tctgtataaa gctgctcagc gtactgatcc atccctttgg tggtgttgtc gccaaacaat
     3181 gctttttcca gacggtggaa accagtgaat tttgggtcgg cggctttttg ctcgtaatca
     3241 tcttcacggg cgtcaatgct gccatccaga tcggagaaca gttcagcaat cggttcaatg
     3301 cgctcatagt gctggcgcgt cggcgcatac agtgctttcg ctttttcgat atcgccagct
     3361 ttaatcgcgt cggtaaaggc tttggtgtcg gtcaccagct gcgtggtttc cgccatgaca
     3421 tacgctttat atgcagtaat tgcaccacca agacttaaca gcgcatcact ttgcgccgca
     3481 tccgccgttg cctcaccttt gacgatcaac ttccctttcg ggttagtcag cagaccgcag
     3541 gtcatatcgt attcgccagg ctgtaaattc gccgtcattt tctggctaaa accaggggcg
     3601 atattttccc gctcttccac caccatcacg cctttgagga tctcccactc cagcgccttc
     3661 tggctatggt tctgaataat gaactgtgtt ttcccggcgt taaccgtaat ggtcatcggt
     3721 tcgcactgct tatccgtcac ggtcactttg acctgcggca catcagcggc gttagccata
     3781 aaagcagaag aaaacagcgc agccacgctc aactgcaatg cgttacggca gaagttaatg
     3841 gtcatgacga gactatccct ttaaagtatg ttgtaactaa gcaagagttt gcgtcgtatt
     3901 tgttacgcgg agcgagacgc tgtcgcccct gcgcgtggtg gcagagcaaa tgccaccagc
     3961 gccgggatga gataaataaa ccagacggcg acttcgctga cgctcggcgc ttcctgatag
     4021 ccaaaaatcc cttccatcag cgtgccaaac agcgagtgag ttgagagcac cgcactcata
     4081 tcgaaggcga tttcctgaaa gtggttccac aatccggctt catgaaatgc gcgaatggca
     4141 ccagctgcca gccctgcggc gacgaagaga ataaacaggc tggtccattt aaaaaatgca
     4201 ccaagattga ggcgaatacc gccccagtag agcagaaagc cgagcaccac ggctgtagca
     4261 agaccgagca ttgcacccag cggcggccag atcccgacat cttgttgaaa tgccgccagc
     4321 aggaaaaaga ccgactccag cccttccctt gcaacggcaa aaaagaccat catcaccagc
     4381 gcccagccat gatgatttcc acgctacaat gcactatcga ctgcctgttc cagttgcact
     4441 tacgttgcgc gacactttgc gcatccagaa aaccatccag gtaaggatca ccacggcgat
     4501 caccgccacg ataccttcaa acagttcctg ttctttttgc ggaaattcgc cggtggtttc
     4561 gttaatgaag atccccaggc ccaggcacaa cgcagcggca agcaacacgc caatccacat
     4621 cacaccaatc catcggcctc gctgggtacg cttaagatag ctggcaatca aactgacaat
     4681 cagcgcggct tcaagtcctt cgcgcaacat aatgagaaac ggaacaaaca tgccacccac
     4741 ccttaaacgt ttttctgagt caatctatgc aaagaaaagt aaatcgcagt gatagcgatt
     4801 atcattacgg taaagaaaaa tacaagcgga atgtttataa aatgatgttg gaatgtaaac
     4861 aaagagaggt aatgccaggg gatataaacg attattccag ggtagaaaga tgggattgtt
     4921 tgcaaagaac catgtgttct tgccggatgc cgcgtaaacg ccatatccag ccgacaaaac
     4981 tgtccagact caatgcatca gagcttccat gtaaaactga taagcgggtg tatcaagcaa
     5041 tttcgtccat ccgcgattat caaatctaac tttttgcccg gaacataata acagctcggg
     5101 tgttggtggc gtcaaaatcg ctgaagcgtt ccccgaaggc cgggacagcc cacatggatg
     5161 tgggctgagg gcgcgtctta caggacgtta cctcgcgccc gacccggtag ccgaagggga
     5221 taagctgaag gtaccgcgca gcggcgattt tgttcgccag agcccggggg tgcacagggg
     5281 gcggcggcga ttggccgccc cctgcgcgct ccctgcacca ttcaatttat atggcgaggc
     5341 acattaaggg agcgcaaccc gctgctgaag ccaaacaaaa ccgccgcagg ctaagtccct
     5401 tagctttcct gcaaccgtga cggcggagcc gaatgatagt gcgcatcggc ctcggcaaag
     5461 cgtttttgca tcgccgctga cggcgcttta cccagcaaac taaacactac aatcccgata
     5521 ctgccgaaga tgaagcccgg aataatttcg tacagtccca gccagccgaa ctgcttccag
     5581 acgataaccg tcagcgcacc gatgatcatc cccgccagtg caccgttacg cgtcatgcgt
     5641 gaccacatca ccgagaacag caccaccgga ccaaacgccg cgccaaagcc tgcccacgcg
     5701 tagctcacta agcccagcac gcggttttcc gggtttgccg ccagcgcaat cgccaccagc
     5761 gccaccacca gcaccatcac acgccctacc cacaccagct ctttctggct ggcatgttta
     5821 cgcagaaacg ctttgtataa atcttcggta atcgcactgg agcacaccag cagttggcaa
     5881 cttaaggttg acattaccgc cgccagaatt gccgacagca gaatcccggc aatccacggg
     5941 ttaaacagaa tttgcgccag ttcgataaac acgcgctcgg cgttctggtt taccgcgcct
     6001 gctaccgccg ggtgctcatt aaagtaagca atcccaaaga agccgacagc caccgcccct
     6061 gccaggcaga ggatcatcca ggtcatactg atacgacgcg catggacaat gctgtggtga
     6121 gaatccgccg ccataaaacg cgccagaatg tgcggctgcc cgaagtaacc cagcccccaa
     6181 cccatcagtg agataatggc aacaaagttc agacctttga gcatatcaac gttttcgatg
     6241 ctcttttgtt tgatcacttc cagcgagtca ccaaagccac cgacactgat aatgacgata
     6301 accggtgtca ggatcagggc aaaaatcatc aggctggcct gtacagtgtc agtccagctc
     6361 accgcgagga aaccgccaat aaaggtgtaa aggatcgtcg ccgcagctcc cgcccacaga
     6421 gccgtttcgt agctcatgcc aaaggtactt tcaaacagac gcgcgcctgc cacaatgccc
     6481 gaagcgcaat aaatggtgaa gaacagcaaa ataaccagcg cggagataat gcgcaaaatg
     6541 cggcttttat cttcaaaacg cccggtgaaa taatccggca atgttaaggc gttattattg
     6601 tattcggtat gcacacgcaa ccgcccggcc accagcttcc agttgatcca cgcgcctaat
     6661 gtcaggccaa tggcgatcca gctttcggaa atcccggaaa gaaaaaccgc gccaggcaac
     6721 cccattaaca gccagccgct catatccgac gcacccgccg ataatgccgt cacaaatggc
     6781 ccaagactac gaccgcccag aatatagtcg tcaaagtttt tcgttgatcg ccaggcgata
     6841 aacccaatca atatcatgcc aaagatatag acacaaaatg tcaccaacat cggtgtgcta
     6901 atagccatct aaagtctcca aaaaattatt atcggcaatg tcgaaacttg ccgttatatc
     6961 tgcaaccgga acggggtaac agagtttatt ttttaccagg gcgaccgtat cctgccggaa
     7021 gcgctggtta ttcacaatcg atttaacaca ccatttacat taaattttag tgctcagcga
     7081 cactattttt catcaggttg cactctctca cattttttgc ggttgcacct ttcaaaaatg
     7141 ttaactgccg cagagaaaaa gtctgagtta tttttttaat ccctgtcata tcaatttctt
     7201 ttattaacat ttcattcatt tttaagcttg ctacgcaggt cacatttaac atggttgcac
     7261 aaagttgcaa catcatggat atttcacgat aacgttaagt tgcacctttc agaacaacag
     7321 gagtaatggc atgggaacca ccaccatggg ggttaagctg gacgacgcga cgcgtgagcg
     7381 tattaagtct gccgcgacac gtatcgatcg cacgccacac tggttaatta agcaggcgat
     7441 tttttcttat ctcgaacaac tggaaaacag cgatactctg ccagagctac ctgcgctgct
     7501 ttctggtgct gccaatgaga gcgatgaagc accgactccg gcagaggaac cacaccagcc
     7561 attcctcgac tttgccgagc aaattttgcc ccagtcggtt tcccgcgccg cgatcaccgc
     7621 ggcctatcgt cgcccggaaa ccgaagcggt ttctatgctg ctggaacaag cccgcctgcc
     7681 gcagctagtt gctgaacagg cgcataaact ggcatatcaa ctggccgata aactgcgtaa
     7741 tcaaaaaaat gccagtggtc gcgcaggtat ggtccaaggg ttattgcagg agttttcgct
     7801 gtcatcgcag gaaggcgtgg cgctgatgtg tctggcggaa gcgttgttgc gtattcccga
     7861 caaagccacc cgcgacgcgt taattcgcga caaaatcagc aactgtaact ggcagtcaca
     7921 cattggtcgt agcccgtcac tgtttgttaa tgccgctacc tgggggctgt tgtttactgg
     7981 caaactggtt tccacccata acgaagccag cctctcccgc tcgctgaacc gcattatcgg
     8041 taaaagcggt gaaccgctga tccgcaaagg tgtggatatg gcgatgcgcc tgatgggcga
     8101 gcagttcgtc acgggtgaaa ccatcgcgga agcgttagcc aatgcccgca agctggaaga
     8161 gaaaggtttc cgttactctt acgatatgct gggcgaagct gcactgactg ccgcagacgc
     8221 acaggcgtat atggtttcct atcagcaggc gattcacgcc attggtaaag cgtctaacgg
     8281 tcgtggcatc tatgaaggtc cgggcatttc aatcaagctg tcggcgctgc atccgcgcta
     8341 cagccgcgcc cagtatgacc gggtaatgga agagctttac ccgcgtctga aatcactcac
     8401 cctgctggcg cgtcagtatg atattggtat taacatcgat gccgaagagg ccgatcgtct
     8461 ggagatctcc ctcgatctgc tggaaaatct ctgtttcgag ccggaactgg caggctggaa
     8521 cggcatcggt tttgttattc aggcttatca aaaacgctgc ccgttggtga tcgattacct
     8581 ggttgatctc gccacccgca gccgtcgccg tctgatgatt cgcctggtga aaggcgcgta
     8641 ctgggatagt gaaatcaagc gtgcgcagat ggacggcctt gaaggctatc cggtttatac
     8701 ccgcaaggtg tataccgacg tttcttatct cgcctgtgcg aaaaagctgc tggcggtgcc
     8761 gaatctaatc tacccgcagt tcgcgacgca caacgcccat acgctggcag cgatttatca
     8821 actggcaggt cagaactact atccgggtca gtacgagttc cagtgcctgc atggtatggg
     8881 cgagccactg tacgagcagg tcacagggaa agttgccgac ggtaaactta accgaccgtg
     8941 tcgtatttat gccccggttg gcacatatga aacgctgctg gcgtatctgg tgcgtcgcct
     9001 gctggaaaac ggtgctaaca cctcgtttgt taaccgtatt gccgacacct ctttgccact
     9061 ggatgaactg gtcgccgatc cggtcactgc tgtagaaaaa ctggcgcaac aggaagggca
     9121 aactggatta ccgcatccga aaattcccct gccgcgcgat ctttacggtc acgggcgcga
     9181 caactcggca gggctggatc tcgctaacga acaccgtctg gcctcgctct cctctgccct
     9241 gctcaatagt gcactgcaaa aatggcaggc cttgccaatg ctggaacaac cggtagcggc
     9301 aggtgagatg tcgcccgtta ttaaccctgc ggaaccgaaa gatattgtgg gctttgtgcg
     9361 tgaagccacg ccgcgtgaag tagaacaggc gctggaaagt gcggttaata acgcgccaat
     9421 ctggtttgcc acgcctccgg ctgaacgcgc ggcgattttg catcgcgctg ccgtgctaat
     9481 ggaaagccag atgcagcaac tgattggtat tctggtgcgt gaagccggaa aaaccttcag
     9541 taacgctatt gccgaagtgc gcgaagcggt cgattttctc cactactacg ccggacaggt
     9601 gcgggatgat ttcgctaacg aaacccaccg tccattaggg cctgtggtgt gtatcagtcc
     9661 gtggaacttc ccgctggcta ttttcaccgg gcagatcgct gccgcactgg cggcaggtaa
     9721 cagcgtgctg gcaaaaccgg cagaacaaac gccgctgatt gccgcgcaag ggatcgccat
     9781 tttgctggaa gcgggtgtac cccctggcgt ggtgcaattg ctgccaggtc agggggaaac
     9841 cgtgggcgcg caactgacgg gtgatgatcg cgtgcgcggg gtgatgttta ccggttcaac
     9901 cgaagtcgct acgttactgc agtgcaatat cgccagccgc ctggacgctc agggtcgccc
     9961 tattccgctc atcgctgaaa ccggcggcat gaacgcgatg attgtcgatt cttcagcact
    10021 gaccgaacaa gtcgtcgtgg atgtgctggc ctcggcgttc gacagtgcgg gtcagcgttg
    10081 ttcggcactg cgcgtgctgt gcctgcaaga tgagattgcc gaccacacgt tgaaaatgct
    10141 gcgcggtgca atggccgaat gccggatggg taatccgggt cgcctgacca ccgatatcgg
    10201 tccggtgatt gatagcgaag cgaaagccaa tattgagcgc catattcaga ccatgcgtag
    10261 caaaggccgt ccggtgttcc aggcggtgcg ggaaaacagc gaagatgccc gtgaatggca
    10321 aagcggcacc tttgtcgccc cgacgctgat cgaactggat gactttgccg aattgcacaa
    10381 agaggtcttt ggtccggtgc tgcatgtggt gcgttacaac cgtaaccagc taccagagct
    10441 gatcgagcag attaacgctt ccggctatgg tctgacgctt ggtgtccata cgcgtattga
    10501 tgaaaccatc gcccaggtca ctggctcggc ccatgttggt aacctgtatg ttaaccgtaa
    10561 tatggtgggc gcagtggttg gtgtgcagcc gttcggcggc gaagggttgt ccggtaccgg
    10621 gccgaaagca ggcggtccgc tctatctcta ccgtctgctg gcgaatcgcc cggaaagtgc
    10681 gctggcagtg acgctcgcgc gtcaggatgc agagtatccg gtcgatgcac agttgaaagc
    10741 cgcattgact cagccgctaa atgcactgcg ggaatgggca gcaaatcgtc cagaattgca
    10801 ggcgttatgt acgcaatatg gcgagctggc gcaggcagga atacaacgat tgctgccggg
    10861 gccgacgggt gaacgcaaca cctggacgct gctgccgcgt gagcgcgtgt tgtgtattgc
    10921 cgatgatgag caggatgcgc tgactcagct cgccgccgtg ctggcggtgg gcagccaggt
    10981 actgtggccg gatgacgcgc tgcatcgtca gctagtaaag gcattgccat cggcagtcag
    11041 cgaacgtatt caactggcga aagcggaaaa tataaccgct caaccctttg atgcggtgat
    11101 cttccacggt gattcggatc agcttcgcgc attgtgtgaa gccgttgctg cgcgggatgg
    11161 agcaattgtt tcggtgcagg gttttgcccg tggcgaaagc aatatccttc tggaacggct
    11221 gtatatcgaa cgttcgctga gtgtgaatac cgctgccgct ggcggtaacg ccagtttaat
    11281 gacgatcggt taaacaggta gccggaggat gttacaccct cctccggcat ctttaacgtg
    11341 gtcgaatccc ctcaataata atccgctgca cgttttcaac cgtttgattg aaaaatacct
    11401 catcgcgcaa cgttgcgcct gtcaccgcct ccacctgagg ggcgaaatcg gcgtaatgtt
    11461 gagtggaagc ccaaataata aaaatcaaat gctgcggatc aatcggcgcg agtttgccgc
    11521 ttttgaccca accggcaatc agcgccgatt tctcatcaat taatgccttc aaatcgcccg
    11581 tcagttcatc cattaacagc ggcgcgcctg ccagcatctc catacagaac aggcgcgaag
    11641 cctgcggata atcgcgtgag acttccagct tcagacggat gtactctttg atcgccgcca
    11701 gcggggcgaa atcttcacga aacgctttta acggtgccag ccagatatcg agaatctgcc
    11761 gcagcacggc aatatacagc gcctcttttg acggaaagta atacagcaga ttggtttttg
    11821 aaacacccgc caactctgcg atctgctcca gccttgtgcc gtgaaaaccg aattgtgaaa
    11881 aagtgtccag tgctgcgcta agaatcgctt ttttcttcgc gcttactgcg cgcgaacgtt
    11941 tacccgttgt tttcactgcg ccttgcgtca tgcgctctcc cctcttgtag attggcaaca
    12001 ggatagcaaa acccccgccc ggcctcgacc ttctgcactc tcatcgcgca cggatgcatg
    12061 ttttatgtgc aactgttttg accgtttagt ccacttttta ccagatattt tagataacac
    12121 aatgctaaca cattaataac attcactttt taaaaactgg catccgcttt gcaaacaagc
    12181 caatacgcgg ctgaaaagga tatgcaggat gcagcgcccc gtctgacttt cactttacga
    12241 gacgaagaga ggttgatgat gaaaattggc gtattcgtac ctattggcaa caacggctgg
    12301 ctcatttcga cccacgcgcc gcagtacatg ccgacctttg aactgaataa agccattgtg
    12361 caaaaagcgg agcattacca tttcgatttc gccct
//
LOCUS       DAJVUP010000128        12028 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.128, whole genome shotgun sequence.
ACCESSION   DAJVUP010000128 DAJVUP010000000
VERSION     DAJVUP010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12028
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.128"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..192
                     /locus_tag="OQQ75_003142"
     CDS             <1..192
                     /locus_tag="OQQ75_003142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1977380.1"
                     /translation="RGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGT
                     NTLLACCCLLRPEEVNSEY"
     gene            182..355
                     /locus_tag="OQQ75_003143"
     CDS             182..355
                     /locus_tag="OQQ75_003143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, GnsA/GnsB family"
                     /protein_id="HCS1977381.1"
                     /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKM
                     TGLESYDVKIKIM"
     gene            complement(404..1476)
                     /locus_tag="OQQ75_003144"
                     /pseudo
     CDS             complement(404..1476)
                     /locus_tag="OQQ75_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415512.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
     gene            complement(1548..4292)
                     /gene="torS"
                     /locus_tag="OQQ75_003145"
     CDS             complement(1548..4292)
                     /gene="torS"
                     /locus_tag="OQQ75_003145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415513.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system sensor histidine
                     kinase/response regulator TorS"
                     /protein_id="HCS1977382.1"
                     /translation="MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQA
                     LIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQ
                     GFDTTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQQLSQQIVAAADEIARLAQGQAN
                     NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVM
                     NLGLEQIQKNAPMLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALY
                     QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLL
                     LLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIG
                     RLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA
                     MSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG
                     GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI
                     TNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRG
                     GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGL
                     RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVD
                     GITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL
                     QLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIK
                     RAAHQLKSSCSSLGMRIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI
                     "
     gene            4375..5364
                     /gene="torT"
                     /locus_tag="OQQ75_003146"
     CDS             4375..5364
                     /gene="torT"
                     /locus_tag="OQQ75_003146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system periplasmic protein TorT"
                     /protein_id="HCS1977383.1"
                     /translation="MRVLLFLLLSLFMLSAFSADNLLRWHDAQHYTVQASTPLKAKRA
                     WKLCALYPSLKDSYWLSLNYGMQEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF
                     PDLQKQVANLPVIELVNALDDPLVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP
                     GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG
                     TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMIWQGELAVEQA
                     IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK"
     gene            complement(5337..6029)
                     /gene="torR"
                     /locus_tag="OQQ75_003147"
     CDS             complement(5337..6029)
                     /gene="torR"
                     /locus_tag="OQQ75_003147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TorR"
                     /protein_id="HCS1977384.1"
                     /translation="MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN
                     QPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK
                     PLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
                     AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ
                     HGECYFLAADVC"
     gene            6149..7321
                     /gene="torC"
                     /locus_tag="OQQ75_003148"
     CDS             6149..7321
                     /gene="torC"
                     /locus_tag="OQQ75_003148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HCS1977385.1"
                     /translation="MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTST
                     TEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQ
                     TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQM
                     KVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAK
                     GDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGD
                     VQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHG
                     APEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDIAGKAHGDKKEEK"
     gene            7321..9869
                     /gene="torA"
                     /locus_tag="OQQ75_003149"
                     /pseudo
     CDS             7321..9869
                     /gene="torA"
                     /locus_tag="OQQ75_003149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415517.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
     gene            9866..10465
                     /gene="torD"
                     /locus_tag="OQQ75_003150"
     CDS             9866..10465
                     /gene="torD"
                     /locus_tag="OQQ75_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HCS1977386.1"
                     /translation="MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLL
                     KSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQ
                     EIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTA
                     LWQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNK"
     gene            complement(10558..10863)
                     /gene="cbpM"
                     /locus_tag="OQQ75_003151"
     CDS             complement(10558..10863)
                     /gene="cbpM"
                     /locus_tag="OQQ75_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HCS1977387.1"
                     /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV
                     FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP"
     gene            complement(10863..11783)
                     /gene="cbpA"
                     /locus_tag="OQQ75_003152"
     CDS             complement(10863..11783)
                     /gene="cbpA"
                     /locus_tag="OQQ75_003152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curved DNA-binding protein"
                     /protein_id="HCS1977388.1"
                     /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA
                     RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF
                     GQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL
                     NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS
                     PWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP
                     PKPDENTAALWQQLADAQSSFDPRKDWGKA"
BASE COUNT         2891 a         3088 c         3182 g         2867 t
ORIGIN      
        1 cgtggagcct tttttatatc tgccttattt ttcttcaacg ctgtatgtat agtaagcgat
       61 aacctgttga ttattgaatc tttcggggag atggcttata acatttctta cctgaccagg
      121 gtaccgggaa ccaacacctt actggcgtgt tgctgtcttt taagaccaga agaggttaac
      181 agtgaatatt gaagagttaa aaaaacaagc cgaaacggaa atcgccgact ttatcgcgca
      241 aaaaatcgcc gagctgaaca agaatacagg gaaagaagtc tctgaaattc gcttcaccgc
      301 acgagaaaaa atgaccgggc ttgaaagtta tgatgtcaaa atcaaaataa tgtgattttg
      361 tgaacatcac cccgtgcgag gtgatgttcc gcttgttgct aatttagtga tcaatcattg
      421 gcgcttgtgg aattaagcgt cggtacaatt cctccggcac cgggctttgc catactcccg
      481 catacattgc gtaaccaatc accgcgaaca taatccccag aaccagtagc gtcattaacc
      541 agccagacaa cgcaaaagct tttttatttg ccgcaggttt ttgcagtgaa aaggtcaatg
      601 ttgaggctac cggacatgac tctacgcaag tcatacagcc ggtacattcc actgttcgta
      661 cctgaattaa tttatctacc gggatccgtg atgggcaatt ttttgcgcat ttgccacagc
      721 cgatacaact ttcggcattg cgacgaatct taaacggcga taatagcgaa accacgccca
      781 tcagcgcgcc atatgggcaa agataacgac accaggcatg gcgaataaac aggctggcaa
      841 tcagcaaaac ggtcacgctg attaatgtcg cggtccccat atgacgaaag aaatcgagca
      901 tttttacgtc catcaccacg ctgtagggcg acaacataaa atagtgaatc gcctgagcgg
      961 gcatcaataa cgcgatatag agaaaaaaac tcaacagcaa atacttcacg ccgcgcagag
     1021 gaatatccag ccagcgggga aggacacatt gccgaccaaa cagtttgtta ccgagatcgc
     1081 cgattaattc agaaagcgta ccaaccgggc ataaccatga gcaaaaggcc tttttgagta
     1141 atagactgat gacgataaaa gcgaccaata acagcatcgc ggagcgtgga cggacggtaa
     1201 ctgacctgtt gtaaggctat atttcagatt catcagaccg gcaatcggta gccagccttc
     1261 gatacctccc ggtctggcga caaatgtcgt gctacttgcc gtttcgtaat agcgcaccca
     1321 ataccagaac gtgatggcaa tataaatatt cattgccaac agtaataatt gcgtcgcttt
     1381 acgccaggtc gtggcattgc gccagtcatt ccacggtaat ttgccgcccg tcgtgcctgg
     1441 ccgccgctgc cagcgggttc tttttttctc tgccatgatt ttgtcagtcc gttaagttgc
     1501 ataccaaatg ccactatttt agttgttctt aactggctga tattgattca aatcgcgttc
     1561 aggtctttct tatgcaacca tgcttccaga gcggcaacac tgcgtgtaat ttcttcgtgt
     1621 ggaagggggg cagataatgg ctgctgctcc agttgtgcgc atagctggct ggcgatacgc
     1681 attcccaaac tcgagcaact gctttttagc tgatgcgcgg cacgctttat tttctcgcta
     1741 tcctgactgg cgcgggcaat gtcgatttca tcgagaagcg gcagggcatg ttgtgtaaat
     1801 aataccagcc attcgtggat cttctccgtc cccattaact gagcatcttc attgagttgc
     1861 gatacatcca gcgattgatc gttattgact tgcagttgga gatagtgcgc cagtaactga
     1921 ccgagcactt cacgcggcac cggtttaggg ataatcccgc ggaataatga actggtacgc
     1981 tggcgcagcg tttcgtcaat gacatgggcg ctaaagccaa tcaaaaccag cgacggatat
     2041 tgctgtgcca gttgtcgggc aagcgtaatg ccgtcgacat ccggcagatc aaaatccacc
     2101 agtgcggcag caaacggttc gctattttgc agtgtctcta aagcctgcgc ggcattgcca
     2161 acagcaacaa cctgcgcacc actggtgttc agcatctcaa cggtaattcg ctgggttagc
     2221 gggttatctt caattaacag caaacgtaaa ccgtcaagac gcaccgcctg attgactgtt
     2281 tttggcacgg gtgccgtggc aacacgtaac ggcaagcgta aacaaaaaca gcttccaacc
     2341 tccggcgtgc tggtggcgct cagttcgccg cccatcgcct gggccagacg gctactgata
     2401 gtcagtccca gcccggtgcc gccgcgtttg ccgcttacct gcacaaatgg ctggaagatt
     2461 tctgccagtt tcgcgggatc aataccgcag ccgctgtctt ccacttcgac cagccattgc
     2521 tcgccatcag tgcggctacg taaaacgatc tgcccttcgt cagtaaaacg cagggcgttg
     2581 ctcaacaggt tggttataac ctgacgaata cgtcgcggat cgcccattaa cgcggtcggt
     2641 acatcgtcgg caattgctgt tgccaggcga atcgggcgac ctttcacccg tccgctcatt
     2701 aattgcaggg tactttccag cagcgggcgc ggttcaaagg gctcatcgct gaccgaaaca
     2761 ttcttgccac ctgcttcgat agccgaataa tcgagaatat cgttgaggat ggtcagcaac
     2821 gattcgccag agtcggtaat cgcccgcaaa tcatcacgct gggcgttaag tgcggggtta
     2881 tctgccagca gttgagcagt gccgagaata ccgtacagcg gtgtgcggat ctcatggctc
     2941 atcgccgcca gaaaggccga ttttgcctgg ctggcttttt ctgcttccgc ccgtgcctgt
     3001 cggtgttcta tcaccagttc ctgcaattca gctgtacgcg ctttgacctg cgccgccagc
     3061 tgttcacggt ggcgattcag tgcatgaaca gtgctgcgaa acgcatccat cagccgcccg
     3121 atggtatcca gctcccgtac gccagcggtt tccgggaaag gggagtcaat atcaccgtcc
     3181 agcagccgtt gcagcgcctg cgtttgttcg gcaagtggac gcgtgactga gcgataaacc
     3241 acgcgccaaa ggatcagaat cagtgcgcaa agtgaaacca tccccagcaa taacaggctg
     3301 tattgcccgc gtgcactggc tttttccaga tgcgccagtc cgtgctgatt acgcagctca
     3361 atggtgtcga ccagctgact gacttcgcta ctaaactgcg cgaactgggc gatgttattt
     3421 tgtgcgagag tttgtaggtg attgctgatt tcactgtcct gctgatacag cgccagcaaa
     3481 tcgctatatt ggctaacggt agttaacgtt gttgcgacct gcgcacgaac acccggatct
     3541 tcaatgcgta tttgccgacg ttgcagaatt ttcaccgcat tattgagctg cttttccagc
     3601 attggtgcat ttttctggat ctgctccagc cccagattca tcaccatttg ctgcacccgc
     3661 agagcgctaa ggcgcagttc attcatctgg ttaacatact caagatcgat atcaatcagc
     3721 cgatcgagtg cactttcagc agcctgacgc tgatcttgtt cgatcaaatc gtaaatcccg
     3781 gcctgggtcg ctccagcgga agttgtcgca ttattcgcct gaccttgcgc caggcgtgcg
     3841 atctcatcgg cggcagcgac tatctgctga ctgagttgct gttgttgctg gcgtagttgc
     3901 agacgccgcc ccaccagttc cccttgctga cgtaacgaac gggagatctc ctgctcctgt
     3961 tgttcaatag cggtggtatc aaaaccttgt tcccgtaacg cttgcagcaa cgcattaatc
     4021 ttcaggcttt gtgcggtgag cattcgcccc tgcgcctgcc acatcttttc gttatcggca
     4081 ctggtcaggt tctgcgcggc gaaaagttcc caggcgctgg cttcgctcaa ctggcgcgcc
     4141 atattcatgg taggaatcaa tgcctgagtg ttgtcttttt ccacctggct gataaagcgc
     4201 aggttgtacc atcccaccag ggtactggtc agggttaaca gcgccatcag ggcaaagccc
     4261 atccagagtc ttcgggtcag ggttaaattc acggtcggtg cactttaggt gaaaaaggtt
     4321 gagtcgcaaa gcagaatgca tctagcataa agccttatta ttgattaggc tatcatgcgc
     4381 gtactgctat ttttacttct ttcccttttc atgttatcgg cattttcggc tgataacctg
     4441 ttgcgctggc atgatgcgca gcattacacg gtgcaagcct ctacgccgct taaagccaaa
     4501 cgcgcatgga aactgtgcgc gctttatccc agcctgaaag attcatactg gttatcgttg
     4561 aactatggta tgcaggaggc aggcggctac agccagttgg ctacccagca agcacaaatc
     4621 gaccagtgta aacagtgggg cgcagaggcc attttgctcg gtagtagcac tacgtcattt
     4681 cccgacctgc aaaagcaggt agcaaatctg ccggtgatcg aactggtaaa tgctcttgat
     4741 gatcccctgg tgaaaagccg cgttggtgta ccctggtttc agatgggcta tcaacctggg
     4801 cgatatttgg tgcaatgggc gcacggtaaa ccactgaacg tgctgttgat gcccggaccc
     4861 gataatgccg ggggcagtaa agagatggtc gagggttttc gcgcagccat tgccggaagc
     4921 ccggtgcgta ttgttgatat tgcgcttggt gataacgata ttgaaatcca gcgtaacctg
     4981 ttgcaggaga tgctggaacg ccacccagaa atcgacgtcg ttgccggaac ggccattgcg
     5041 gcagaggcgg caatgggtga agggcgtaac ctgaaaacgc cgcttaccgt ggtgtcgttt
     5101 tatctttcac atcaggtgta tcgcgggctg aagcggggaa gagtgattat ggctgccagc
     5161 gatcaaatga tctggcaggg ggaactggcg gttgagcagg ccatcaggca attacagggg
     5221 caatcggtgt ctgataatgt cagcccaccg attttagttc tgacgccgaa aaatgccgac
     5281 cgtgaacata ttcgccgctc gctgtcacca gggggatttc gtccggtcta tttttatcag
     5341 cacacatcag cggctaagaa ataacattca ccatgttgcg tcaccagtaa atccgcgctg
     5401 agtttatgac gtaaacgacg aattaacaca tcgacggtgc gcaggtcagg gttttccacc
     5461 cgacgcgcag aaagcatacg tagcagacgt tcacggctga gaatttcgcc cggattcgtc
     5521 acaaatgcca ccaacatttc atactctgcg cgggtcagtt taatcggctc gccatcccgc
     5581 tccagcgtat ggcgcgacac attcaggcaa taaccggcaa agcgatagca gttgtcctga
     5641 gtgtgcggtt gagcttgtcg cgcgaggtcg attcgccaga gcagattttt cacccgtact
     5701 accagttcgc gcagttccag cggtttggtg acgtaatcgt ctgcgcccat ttccagccca
     5761 acaatacggt caatccgatc gctgcgtccg gtaaccagaa taatccccac cgttgagcgt
     5821 tctcgcaggg cgcgggttaa catcaggcca ttttcatcgg gtaagttgat atccagcaga
     5881 attaaatcta ccggctgatt ctgcataatt tcccgcagcc cggcaccgct cgctgtaacg
     5941 gaaacggtat acccctcctg agtgaagtaa gattgtaatc gcgcctgggt aaccggctca
     6001 tcttcaacaa taacaatgtg atgtggcatc agagggtttt actcattctg ttcatattct
     6061 gccgtaagcc gttcatcctg accagtgccg ctgttcatat ttgctcatta agatcgcttc
     6121 actaaaccat aattttacag gggctattat gcggaaactc tggaacgcgc tacgccgacc
     6181 cagtgctcgt tggtcggtac tggcgctggt cgcaattggg attgtgattg gcattgcgct
     6241 gattgtattg ccacacgttg ggatcaaagt caccagcaca accgaatttt gtgtcagttg
     6301 ccacagtatg caaccggtgt atgaagaata taaacagtcg gtgcatttcc agaacgcctc
     6361 cggcgtgcga gctgaatgcc atgactgtca tatcccgccg gatattccag gcatggtgaa
     6421 gcgcaaactg gaagcgagca atgatatcta ccagaccttt attgctcact ccattgatac
     6481 acctgaaaaa ttcgaagcca aacgcgcgga acttgccgag cgtgaatggg cgcgaatgaa
     6541 agaaaacaac tcggcaacct gccgctcctg ccataactac gatgcgatgg atcatgcgaa
     6601 gcagcatcct gaagcggcac gtcagatgaa ggtggcagcg aaagataatc aatcctgcat
     6661 cgactgtcat aaaggtattg cccaccagtt accggatatg agtagcggct tccgtaagca
     6721 gttcgatgag ctgcgcgcca gtgctaatga cagtggtgac acgctgtact ctattgatat
     6781 taagccaatt tatgcggcga aaggcgataa agaagcctct ggttctctgc tgcctgcttc
     6841 ggaagtgaaa gtccttaaac gtgacggcga ctggctgcaa attgaaatta ccggctggac
     6901 ggaaagcgcc ggacgtcagc gtgtactcac ccaattccca ggtaaacgca tctttgttgc
     6961 ctcgattcgt ggtgatgtgc agcagcaggt aaaaacgctg gagaaaacca ccgttgccga
     7021 caccaatacc gagtggagca agttgcaggc cactgcgtgg atgaagaaag gtgatatggt
     7081 gaacgatatc aaaccgatct gggcttatgc ggattcgttg tacaacggca cctgtaacca
     7141 gtgccacggc gcaccggaaa tctctcactt tgatgctaac ggctggattg gcacgctcaa
     7201 cggcatgatt ggctttacca gtctcgataa acgtgaagaa cgcaccttgt tgaaatatct
     7261 gcaaatgaat gcgtctgaca tcgcaggtaa ggctcacggc gataagaagg aagaaaaata
     7321 atgaacaata acgatctctt tcaggcatca cgtcggcgtt ttctggcaca actcggcggc
     7381 ttaacagtcg ccgggatgct ggggccgtca ttgttaacgc cgcgcagtgc gactgcggcg
     7441 caagcggcgg atgtcatctc gaaagagggc attcttaccg ggtcgcactg gggggctatc
     7501 cgcgcgacgg tgaaggatgg tcgctttgtg gcggcaaaac cgttcgaact ggataaatat
     7561 ccgtcgaaaa tgattgccgg attgccggat tgccggatca cgtacacaac gcggcgcgta
     7621 ttcgttatcc gatggtacgc gtggactggc tgcgtaagcg ccatctcagc gatacctccc
     7681 agcgcggtga taaccgtttt gtgcgcgtga gctgggatga agccctcgac atgttctatg
     7741 aagaactgga acgcgtgcag aaaactcacg ggccgagtgc cttgctgacc gccagtggtt
     7801 ggcaatcgac ggggatgttc cataacgctt cggggatgct ggcgaaagct attgccttgc
     7861 atggtaatag cgttggtacg ggcggagatt actctaccgg tgctgcgcag gtgatcctgc
     7921 cgcgcgtagt cggttcgatg gaagtgtatg aacagcaaac ctcctggccg ctggtattgc
     7981 agaacagcaa aaccattatg ctgtggggct ccgatttgct gaaaaaccag caagcgaact
     8041 ggtggtgccc ggatcacgat gtttatgaat attacgagca actaaaagcg aaagtcgccg
     8101 ccggtgaaat tgaggtcatc agcatcgatc cggttgtcac atccacccat gagtatctgg
     8161 ggcgcgagca tgtgaagcac attgcggtta acccgcaaac tgacgtgccg ctgcaactgg
     8221 cgctggcgta tacgctgtac agtgaaaacc tgtacgacaa aaacttcctc gctaactact
     8281 gtgtaggttt tgagcagttc ctgccgtatc tgctgggtga gaaagacggt cagccgaaag
     8341 atgccgcatg ggctgaaaaa ctgaccggca ttgatgccga aaccattcgt gggctggcgc
     8401 ggcagatggc ggcgaacaga acgcaaatta ttgctggctg gtgcgtgcag cgtatgcagc
     8461 acggtgaaca gtgggcgtgg atgattgtgg ttctggcggc gatgctgggg caaattggcc
     8521 tgccaggtgg tggttttggt tttggctggc actacaacgg cgcaggcacg ccggggcgta
     8581 aaggcgttat tctgagtggt ttctccggct ctacgtcgat tccgcctgtt cacgacaaca
     8641 gtgactacaa aggctacagc agcaccattc cgattgcccg ttttatcgat gcgatcctcg
     8701 aaccggggaa agtgatcaac tggaacggta aatcggtaaa actgccgcca ctgaaaatgt
     8761 gtatttttgc cggaactaac ccattccatc gccatcagca gatcaaccgc attatttaag
     8821 gctggcgcaa gctggaaacg gttatcgcca tagataacca gtggacctca acctgccgct
     8881 ttgccgatat cgtactgcct gcgaccacgc agtttgagcg taacgatctc gaccagtacg
     8941 gcaaccactc caaccgtggc attatcgcca tgaaacaggt ggtgccgccg cagttcgagg
     9001 cgcgcaacga ctttgatatt ttccgcgagc tgtgccgtcg ctttaatcgc gaagaagcct
     9061 ttaccgaagg gctggacgaa atgggctggc tgaaacgcat ctggcaggaa ggtgtacaac
     9121 aaggcaaagg acgcggcgtt catctgccag cgtttgatga cttctggaat aacaaagagt
     9181 acgtcgagtt tgaccatccg cagatgtttg ttcgccacca ggcattccgc gaagatccgg
     9241 atctcgaacc gctgggcacg ccgagtggcc tgattgagat ctactcgaaa accatcgccg
     9301 atatgaacta cgacgattgt caggggcatc cgatgtggtt tgagaaaatc gaacgctccc
     9361 acggtgggcc cggctcgcag aagtatccgt tgcatctgca atctgtgcat ccggatttcc
     9421 gacttcactc gcagttatgt gagtcggaaa ctctgcgtca gcaatatacg gtagcgggta
     9481 aagagccagt attcattaac ccgcaggatg ccagcgcgcg cggtattcgt aacggtgatg
     9541 tggtacgcgt ctttaacgct cgcggtcagg tgttggcagg ggcagtagtt tctgaccgct
     9601 atgcacccgg cgtggcacga attcacgaag gggcatggta cgatccagat aaaggcggcg
     9661 agcctggtgc gctgtgcaaa tacggtaacc ccaacgtgct gaccatcgac atcggtactt
     9721 cgcagctggc gcaggcgacc agtgcgcaca ctacgctggt ggaaattgag aagtacaatg
     9781 gagcagtgga gcaggtgacg gcgtttaacg gccctgtgga gatagtggcg cagtgcgaat
     9841 atgttcccgc gtcgcaggtg aaatcatgac cacgctgaca gcacaacaga ttgcctgtgt
     9901 ttacgcctgg ctggcgcagt tgttctcccg tgaactggac gatgaacaac tgacgcaaat
     9961 cgccagtgcg cagatggcgg aatggttttc gttgctgaaa agcgaaccgc cgctggctgc
    10021 ggcggtgaat gagctggaaa actgtattgc cacgctgaca gtacgtgacg atgcccgtct
    10081 ggaactggcc gctgactttt gcggcctgtt tttgatgact gataagcagg cggcgctgcc
    10141 gtatgcatcg gcctacaaac aggacgagca agagattaaa cgcttgttag ttgaggcagg
    10201 gatggaaacc agcggcaatt tcaacgaacc ggcagaccat ctggcgatct atctcgagtt
    10261 gttgagtcat ctgcattttt cgctgggaga ggggaccgtt cctgcgcgaa gaatcgacag
    10321 tttgcggcaa aaaacactga cggcgctgtg gcaatggtta ccagagtttg ctgcgcgttg
    10381 ccatcagtat gacagctttg gtttttacgc ggcactaagc cagttattgc tggtgttagt
    10441 ggagtgcgac caccaaaaca aataacgtcg tttatgcgcc tgaaaagacg cgtttagcgt
    10501 cgcatcaggc attatggcgc agttgccgga tgcgtcatca catccggcaa acacacatca
    10561 cggatgagct acaaaccggg aaagccgctg gcgtagcagg cggttttcct gcttcaggtg
    10621 tgcaatatca tccattaacg tcagcgccac cgcgatcccc ggccagtcca gagccagttc
    10681 atgacgcagg cgtaccgcgc gttgcaccac aatggcggca tggtcgtcaa atacccaggt
    10741 tgtttcctgg atctcacgcg gttcaaccac ccccaaaccg acaatttcat tcaactcctc
    10801 ttcagagatg ccggtatgca ggcaaaattc ggtaatagta aaagtcaccg taacattagc
    10861 catcatgctt tcccccaatc tttacgtgga tcaaaagacg actgggcgtc tgccagttgc
    10921 tgccacagcg cggcagtgtt ttcatccggt ttcggcggca tcacgatttt cagtaccgca
    10981 tacagatcgc cggtctgttt tttgctcacc agacctttgc ctttaacgcg caatcgttgc
    11041 ccggcctggc tgcctggcgg gatagtcagc aaaatgcttt ctttcagtgt tggaacggtg
    11101 actttagcac ccagcgccgc ttcccacggg ctaaccggca ccacaatttc cagatcctgg
    11161 ccgacaatat cgaacagcgg atgtggcgca atatgaatca ccagccacaa atcgccattt
    11221 ggaccaccgt tttcgcccgg cgtcccctgg cctttcagac ggatgcgttg accattgccg
    11281 acgcccgccg ggatcttcac attcagcgtt ttcgggattt cctgttcgat catgccaaag
    11341 gcgttataaa ccggcaggtt atagctgatg gtacgcttat gctcagtcag cgtttcttcg
    11401 aggaataccg ccacttcgat ttcaatatcg tggccgcgtg cggcggggcg ttgacggctc
    11461 tggcgggcat gctgaccgaa aattgacgag aagatatcgt caaaatcttc ggcattaaaa
    11521 ctctgaccgt cgccatgatg gaactgacgg ttaaattgcg gatcgttgcg atgttgccac
    11581 atctgatcat actcagcgcg acgttgttca tcacttaaca cttcccaggc ttcagcgacc
    11641 tctttgaagc gggcttcggc atccggttct ttgctgacat caggatggta tttacgggcc
    11701 agtcgacgat aggcggtctt gattgtcttg agatcgtccg tcggtttcac gcccatgatg
    11761 gcgtaataat cctttaattc catagcgtta tctcgcgtaa atcaacacaa attgaaggaa
    11821 cccctgtaag gtaactccta taagtgtagg gtaatcctca aaatttcata tgccaacaca
    11881 gaatatgtta ttgaaatcat cgtggagagg aggtcgccat caatatgggt tgctgaacat
    11941 attttaaaca ggtgaaaaag ggtgagcgat ttttgatagt tgaaccaggc actttaagtt
    12001 taactagggc gtcattattt attaaatt
//
LOCUS       DAJVUP010000129        11956 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.129, whole genome shotgun sequence.
ACCESSION   DAJVUP010000129 DAJVUP010000000
VERSION     DAJVUP010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11956
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.129"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..328)
                     /locus_tag="OQQ75_003153"
     CDS             complement(<1..328)
                     /locus_tag="OQQ75_003153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1977389.1"
                     /translation="MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTA
                     LALFDLLKPNYVLTTQVEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVV
                     VVHENRG"
     gene            484..1524
                     /gene="gpr"
                     /locus_tag="OQQ75_003154"
     CDS             484..1524
                     /gene="gpr"
                     /locus_tag="OQQ75_003154"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HCS1977390.1"
                     /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES
                     QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM
                     WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG
                     KALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG
                     CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ
                     RGQSMAQMALSWLLKDDRVTSVLIGVSRAEQLEENVQALNNLTFSTEELAQIDQHIAD
                     GELNLWQASSDK"
     gene            complement(1564..2058)
                     /locus_tag="OQQ75_003155"
     CDS             complement(1564..2058)
                     /locus_tag="OQQ75_003155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HCS1977391.1"
                     /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN
                     IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDA
                     TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT
                     RHNH"
     gene            2249..3133
                     /gene="yghA"
                     /locus_tag="OQQ75_003156"
     CDS             2249..3133
                     /gene="yghA"
                     /locus_tag="OQQ75_003156"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS1977392.1"
                     /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGS
                     GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA
                     VLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN
                     VFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA
                     EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE
                     SSYVTAEVHGVCGGEHLG"
     gene            complement(3405..3830)
                     /gene="exbD"
                     /locus_tag="OQQ75_003157"
     CDS             complement(3405..3830)
                     /gene="exbD"
                     /locus_tag="OQQ75_003157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HCS1977393.1"
                     /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD
                     VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI
                     FFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK"
     gene            complement(3837..4571)
                     /gene="exbB"
                     /locus_tag="OQQ75_003158"
     CDS             complement(3837..4571)
                     /gene="exbB"
                     /locus_tag="OQQ75_003158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1977394.1"
                     /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK
                     SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLFNEAQNELELSEGSD
                     DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA
                     QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL
                     LQSRDLDLEASAAAHPVRVAQKLRAG"
     gene            4823..6010
                     /gene="metC"
                     /locus_tag="OQQ75_003159"
     CDS             4823..6010
                     /gene="metC"
                     /locus_tag="OQQ75_003159"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCS1977395.1"
                     /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFESMEAKKH
                     ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGD
                     HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT
                     MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA
                     MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW
                     LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLF
                     SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA
                     RIV"
     gene            6150..6809
                     /locus_tag="OQQ75_003160"
     CDS             6150..6809
                     /locus_tag="OQQ75_003160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1977396.1"
                     /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP
                     ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGW
                     LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS
                     GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGMLFVVIKKKYCN
                     A"
     gene            complement(6849..7748)
                     /gene="yqhC"
                     /locus_tag="OQQ75_003161"
     CDS             complement(6849..7748)
                     /gene="yqhC"
                     /locus_tag="OQQ75_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001407451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YqhC"
                     /protein_id="HCS1977397.1"
                     /translation="MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
                     VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLN
                     VDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
                     KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEAN
                     MSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSR
                     EFKRYFGVTPGEDAARMRAMQGN"
     gene            7942..9105
                     /gene="yqhD"
                     /locus_tag="OQQ75_003162"
     CDS             7942..9105
                     /gene="yqhD"
                     /locus_tag="OQQ75_003162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HCS1977398.1"
                     /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKT
                     GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTK
                     FIAAADNYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDK
                     QAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAE
                     GILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM
                     HGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFF
                     EQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR"
     gene            9210..10037
                     /gene="dkgA"
                     /locus_tag="OQQ75_003163"
     CDS             9210..10037
                     /gene="dkgA"
                     /locus_tag="OQQ75_003163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgA"
                     /protein_id="HCS1977399.1"
                     /translation="MANPTVIKLQDGNVMPQLGLGVWQASNEEVIIAIQKALEVGYRS
                     IDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYID
                     LYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ
                     IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI
                     RWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG"
     gene            10237..11163
                     /locus_tag="OQQ75_003164"
     CDS             10237..11163
                     /locus_tag="OQQ75_003164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjP/YqhG family protein"
                     /protein_id="HCS1977400.1"
                     /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRQIYQNYKSDASTPY
                     FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD
                     ADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA
                     ALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM
                     QIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQR
                     REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ"
     gene            11214..11471
                     /gene="yqhH"
                     /locus_tag="OQQ75_003165"
     CDS             11214..11471
                     /gene="yqhH"
                     /locus_tag="OQQ75_003165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YqhH"
                     /protein_id="HCS1977401.1"
                     /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE
                     QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE"
     gene            11551..>11956
                     /locus_tag="OQQ75_003166"
     CDS             11551..>11956
                     /locus_tag="OQQ75_003166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001603762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977402.1"
                     /translation="MRRWHTCFFILLFCGFSGNVLCKESINEAIERLYQPLTSNDDIP
                     ITDEFSLDLRSNMSATPGKMTPWLNNNLLCRCVDDAFVSAEIIQSTHLNGGRTHVLLQ
                     LVIKQNRTDIHRLLGLMLVRENDNHRWLIEDID"
BASE COUNT         3097 a         3025 c         2983 g         2851 t
ORIGIN      
        1 gtccacgatt ctcatgcacc accaccacgg ctggcgtttt gccgctcatt tttgcgggtt
       61 tcaccagata accccgtacc tcgccgtgac catttggcga aggatacgtg atgtactcag
      121 caacaatctc cgggtcggta aactctacct gagtcgtcag cacataattt ggcttgagca
      181 aatcaaacaa cgctaatgcc gtcatcccgc ccaccgcata cttcgccgca aggttgagga
      241 actcacgttt cgaaattttc ccgtgagcgt aatagtcgta gtaatccaac aactcttgtg
      301 ggaaatcttt ggcggttaaa cgcggcatcg ttgcattcct caactggtgt tttttaagca
      361 aagcataagc gcgtgttttt gcccagtttt tcgtcactct gtgagccaga ctacgggata
      421 cgcgctggcg aatcgctaaa ctagaaacat tgtttcgaaa ttgaacggtg gaaaggagag
      481 gtcatggtct ggttagcgaa tcccgaacgt tacgggcaga tgcagtaccg ctattgcgga
      541 aaaagtggtt tacgcctgcc cgcgttatcg ctcggtttat ggcacaattt cggtcacgtt
      601 aacgcgctgg aatcacagcg tgcaatcctg cgtaaagcgt ttgatttagg cattacgcac
      661 tttgatttag ccaacaatta cgggccgcct ccaggaagcg cagaagagaa ctttggtcgc
      721 ctgctgcggg aggattttgc cgcttatcgc gatgaactga ttatctctac caaggctggc
      781 tacgatatgt ggcccggccc ttacggctct ggcggttcac gtaaatacct gctcgccagc
      841 ctcgaccaaa gcctgaagcg tatggggctt gagtatgtcg atatctttta ctctcatcgc
      901 gtcgatgaaa atacgccgat ggaagaaacc gcctctgcgc tggctcatgc ggtacaaagc
      961 ggtaaggcgc tgtatgtcgg gatctcctct tactcgccag agcggacgca aaaaatggtc
     1021 gagttgctgc acgagtggaa aattccgctt ttaattcatc aaccttcgta caatttactg
     1081 aaccgctggg tggataaaag cggcctgctg gataccctgc aaaataacgg cgtgggctgt
     1141 attgccttta ctcctctggc tcagggattg ctgaccggaa aatatctcaa cggcattccg
     1201 caagattcac ggatgcatcg tgaagggaat aaagttcgtg gtctgacgcc gaaaatgctt
     1261 accgaagcca acctcaacag cctgcgctta ttgaatgaaa tggcacagca gcgtggacaa
     1321 tcaatggcgc aaatggcgtt aagctggttg ctgaaagatg atcgcgtgac gtcggtattg
     1381 attggtgtca gccgcgcgga gcaactagag gagaacgtgc aggcgctgaa taatctgaca
     1441 tttagcaccg aggagctggc gcagattgat cagcatatcg ccgatggcga gctgaatctg
     1501 tggcaggcgt cttccgataa atgacctgtt aataacgggc gcgcgaaccg cgcccgaatc
     1561 agatcagtga ttatgacgag tcagtcggtc aagatagccc atcacaaatg cagagagcac
     1621 aaacgtcaga tggataatga cgtaccacat cagtttgtta tccgggacat ttttcgcatc
     1681 cataaagacg cgcagtaagt gaatggaaga aattgccaca atcgacgctg ctactttgtt
     1741 tttcagcgac gttgcgtcca ttttccccag ccagttcagc ttctctttgt tctcggagat
     1801 atccagctgc gagacgaaat tctcataacc ggaaaacatc accatcacca gcaaaccgcc
     1861 aaccagcgtc atatccacca gcgacagcaa cacgaggatc aaatctgatt ccgccatcga
     1921 gaagatattc ggcagtacgt gaataatctc ctggaagaac ttcagcgcca gggcaactaa
     1981 cgccagcgaa aggccaaagt acacgggggc aagcagccag cgagaagcat acattgcatt
     2041 ttcaagaaaa cgttccatac attcctgtcg tgtagttaaa acgggcaaca gtatatcgca
     2101 attgagtaaa cagcacgcaa cagcaaatca acatatacgt taaacctttg tcgcataatt
     2161 ctgaggttta gggatcttcc tggttccctt atcaacgcat cgagagcgtc tacccttaaa
     2221 agacgttgaa cctgaaggga gaaaaacaat gtctcattta aaagacccga ctacgcagta
     2281 ttacactggt gaatatccca aacagaaaca accgacgcca ggcatccagg cgaagatgac
     2341 accggtaccg gattgcggcg agaaaaccta tgttggtagc ggtcgcctga aagatcgtaa
     2401 agcactggtg acagggggcg attccggaat aggtcgcgct gccgccatcg cttacgcgcg
     2461 tgaaggggct gacgtggcga tcagttatct tcccgtggaa gaagaagacg ctcaggatgt
     2521 gaaaaagatc attgaagaat gcggacgcaa agccgttctg ctgccaggcg atttaagcga
     2581 tgagaaattc gcccgttcgc tggttcacga agcgcacaag gcgttaggcg ggctggatat
     2641 tatggcgctg gtcgccggga aacaggttgc cattccggat attgcagacc tcaccagcga
     2701 acagtttcaa aagacctttg ccattaacgt tttcgcgctg ttctggctaa cccaggaagc
     2761 gatccccctg ctaccgaaag gtgcaagtat catcaccact tcgtcaatcc aggcatacca
     2821 gccaagtccg catttactgg actatgcggc tacgaaggcg gcgattctga actacagccg
     2881 tggcctggca aaacaggtcg cggagaaagg tattcgggtg aatattgtcg cgccaggccc
     2941 tatctggacg gcactgcaaa tttccggcgg acaaacgcag gataagatcc cgcagtttgg
     3001 tcagcaaacg ccgatgaagc gtgcggggca accggcggaa ctggcccctg tatatgttta
     3061 tctggcaagt caggagtcga gctacgtcac cgcagaagtg cacggtgtgt gcggcggcga
     3121 gcatttaggt taaaaaaatg cccggttgtg aaaagcaacc gggcatcatt gtgaattcac
     3181 tcttacctga tgtggcgaaa acgccttatc cgcctacaaa cgcatgaaga ttcaacatgt
     3241 tgcaatagat tttgtaggcc tgataagcgt agcgcatcag gcattgagca cctaatgccg
     3301 gatgcggcgt gaacgcctta tccggcctac aaacgcacga agattcaaca tgttgcaata
     3361 gattttgtag gcctgatgag cgtagcgcat caggcaattc tactttactt cgctttggcg
     3421 gtttcttcgc cgaccagacc tatcttcagg taacccgcct gatgcagcgt atccattacc
     3481 ttcatcaacg tctcgtaatc gacggtttta tccgctcgga agaagatggt ggtgtctttc
     3541 ttgccttcgg ttaacgcatt caacgccgta atcattgttt catcggtgac cggatcgtta
     3601 ccgataaaca tcgagttgtc tgccttcacc gacagataaa ccggtttttc cgggcgcggc
     3661 tgcggcgtgc tggtagaagc aggcaagttc accttcacat ctaccgtcgc taacggtgcc
     3721 gccaccataa agataatcag cagaaccaac atcacgtcga taaacggcgt cacgttgata
     3781 tcatgcattt cgccgttatc gtcgaggttt tcgttaagat gcattgccat cggatattat
     3841 cctgcgcgta atttttgtgc gacacgaacc ggatgcgcag cggcgctggc ttccagatcc
     3901 aggtcacggc tttgcagcaa caatacctgc gctgcaacat cacccagcat cgctttaaag
     3961 ccgccaatct ggcgtgcaaa tacgttatag ataacgaccg caggaatcgc tgccacgagg
     4021 ccgattgccg ttgctaacag agcttctgcg atacccggcg caacgactgc caggttagtg
     4081 gtctgcgttt gcgcgatacc aataaagctg ttcatgatgc cccagaccgt accaaacaga
     4141 ccaacgaacg gagaaatcgc gccgatggtt gccagatagc cgttaccgcg gcccatttga
     4201 cgacccactg cggcgacccg acgctccaga cggaagctgg tacgttcttt aataccttcg
     4261 ttatcgtcgc tgccttctga cagttccagc tcattctgcg cttcattgaa caaatgcagg
     4321 cttaagcttt tgctaccaaa atcagcggcg atatcgttgg cctggtttaa ggaacgcgct
     4381 tcagccagca gttgctgctc gcgctttagg cgacgcttct gattgaagaa ctctacgctc
     4441 ttactgaaga agattgccca ggtgactacg gaggccaaaa taagcccaat catcacgcac
     4501 ttaacgacaa tatcggcgtg ctgatacata ccccagacgg aaaggtctgt ctgcattaaa
     4561 ttattaccca ctgtgtatct ccaggacgca agtcacaaaa tctgcgcata ataatatcaa
     4621 aacgacgtcg aattgatagt cattctcatt actatttgca tactgccgta cctttgcttt
     4681 cttttccttg cgtttacgca gtaaaaaagt caccagcacg ccatttgcga aaattttctg
     4741 ctttatgcca attcttcagg atgcgcccgc gaatattcat gctagtttag acatccagac
     4801 gtataaaaac aggaatcccg acatggcgga caaaaagctt gatactcaac tggtgaatgc
     4861 aggacgcagc aaaaaataca ctcttggcgc ggtaaatagc gtgattcagc gcgcttcttc
     4921 gctggtattt gagagtatgg aagccaaaaa gcacgcgacg cgcaatcgcg ccaatggcga
     4981 gttgttctat ggacggcgcg gaacgttaac ccatttttcc ttacaacaag cgatgtgtga
     5041 actggaaggt ggcgcaggct gcgcgctatt tccctgcggg gcggcagcgg ttgctaattc
     5101 gattcttgct tttgtcgaac agggcgatca tgtgttgatg accaacactg cctatgaacc
     5161 gagtcaggat ttctgtagca aaatcctcag caaactgggc gtaacgacat cgtggtttga
     5221 tccgctgatt ggtgccgata tcgttaagca tctgcagcca aacactaaaa tcgtgtttct
     5281 ggaatcgcca ggctccatca ccatggaagt ccacgacgtt ccggcgattg ttgccgccgt
     5341 acgcagtgtg gtgccggatg ccatcattat gatcgacaac acctgggcag ccggtgtgct
     5401 gtttaaggca ctggattttg gcatcgatgt ttctattcaa gccgccacca aatatctggt
     5461 tgggcattca gatgcgatga ttggcactgc cgtgtgcaat gcccgttgct gggagcagct
     5521 acgggaaaac gcctatctga tgggccagat ggtcgatgcc gataccgcct atataaccag
     5581 ccgtggcctg cgcacattag gtgtgcgttt gcgtcaacat catgaaagca gtctgaaagt
     5641 ggctgaatgg ctggcagaac atccgcaagt agcgcgagtt aaccaccctg ctctgcctgg
     5701 cagtaaagga cacgaattct ggaaacgaga ctttacaggt agcagcgggc tgttttcctt
     5761 tgtgcttaag aaaaaactca gtaatgaaga gctggcgaac tatctggata acttcagttt
     5821 attcagcatg gcctactcgt ggggcgggta tgaatcgttg atcctggcga atcaaccaga
     5881 acatatcgcc gccattcgcc cacaaggcga gatcgatttt agcgggacct tgattcgcct
     5941 gcatattggt ctggaagatg tcgacgatct gattgccgat ctggacgccg gttttgcgcg
     6001 aattgtataa cattgccact tttggacaat tttgcagaca tttaattgtg aaaagtctta
     6061 aattgttgcg tccgggatca aggcgtcccg gacgaatcag gagtacaata ggcagataaa
     6121 ggcttaaacg ctgttccaca ggaaagtcca tggctgttat tcaagatatc atcgctgcgc
     6181 tctggcaaca cgactttgcc gcgctggcgg atcctcatat tgttagcgtt gtttactttg
     6241 tcatgtttgc cacgctgttt ttagaaaacg gcctgctgcc cgcctcattt ttgccaggcg
     6301 acagcttgtt gatactggca ggcgcattga ttgcccaggg ggttatggat tttctgccta
     6361 cgattgcgat tctgaccgcc gcagcaagtc tgggctgctg gctaagttat attcaggggc
     6421 gctggttagg gaataccaaa acggtgaaag gctggctggc acagcttcct gctaaatatc
     6481 accagcgcgc cacctgcatg tttgaccgcc acggtctgct ggcgctgctg gctggacgtt
     6541 ttcttgcatt tgtccgtacg ctgctgccaa ccatggcggg aatttccggt ctgccaaacc
     6601 gtcgcttcca gtttttcaac tggttaagtg gattgctgtg ggtcagcgtg gtaaccagtt
     6661 ttggctatgc cttaagtatg attccgttcg ttaaacgcca tgaagatcag gtaatgacgt
     6721 tcctgatgat cctgccaatt gccttgttaa ccgctggctt gttaggcatg ctgtttgtgg
     6781 tgattaaaaa aaaatactgt aacgcctgac gattttcccc gttcccggct gctgtaccgg
     6841 gaacgtattt aattcccctg catcgcccgc attcttgccg catcttcccc cggcgtcaca
     6901 ccgaagtaac gtttaaactc acggctaaat tgcgatgcgc tttcatagcc gacgcgcatc
     6961 gctgctgcgc tggccttcat gccgtcatgg atgatcatca tccgcgcctt atgcagacgg
     7021 taattcttca aatactgcaa cggcgaggtg ctggtgacag acttaaaatt atggtggaac
     7081 gccgatacgc tcatgttggc ttctgccgcc agttgctcga cgctcaggtt ttcggtgtat
     7141 ttattctcaa tccgtttcag cacgcggcta atcagactga agtgagtctg gcgactgacc
     7201 agcgccagta acgcgccgcc gcaaggtccg gtcagcacgt agtacagaat ttcgcggatg
     7261 atctgtttgc cgagaatacg cgcatccagt ggtcgctcca tcacgtcgag taaccgctcc
     7321 gccgcgcata aaatctcttc tgataacgtg gcggagttaa tcccgctggc tgccatcgac
     7381 ggctggaaat gctcatcttc gccaatgtcc atcaacagtt cctgtaactg caaaatatcg
     7441 acattgagac gcaaccctgc cagcggcacc tctgacgtgg cataggtttc gcactcaaac
     7501 ggcaacggca ccgtcagcag caggtattca ttggcatcat aacgaaacac gcgttcattg
     7561 atataaccga ttttatgccc ggaaaagaga attatgatgc caggctcgta catcaccggt
     7621 gtacgtgcga aaggcgtctc accatacaac aaacgcacat cgggcaacag ttctgacaaa
     7681 ctattttctt tatttttcag tttattaact ttatccgcca gcaagcggca aatctcttca
     7741 cgtttcatat cgcgtaattt cttaggaata atgcggcaat ttgattgtgc gcaattttgt
     7801 agcatttctc cagcactctg gagaaatagg caagacattg gcagaaatga gcattgagag
     7861 ccagggcgct ggcgatcaca atgaaaaaca tcaggcagat cgttctctgc cctcatattg
     7921 gcccagcaaa gggagcaagt aatgaacaac tttaatctgc acaccccaac ccgcattctg
     7981 tttggtaaag gcgcaatcgc tggtttacgc gaacaaattc ctcacgatgc tcgcgtattg
     8041 attacctacg gtggcggcag cgtgaaaaaa accggcgttc tcgatcaagt tctggatgcc
     8101 ctgaaaggca tggacgtgct ggaatttggc ggtattgagc caaacccggc ttatgaaacg
     8161 ctgatgaacg ccgtgaaact ggttcgcgaa cagaaagtga ctttcctgct ggcggttggc
     8221 ggcggttctg tactggacgg caccaaattt atcgccgcag cggataacta tccggaaaat
     8281 atcgatccgt ggcacattct gcaaacgggc ggtaaagaga ttaaaagcgc catcccgatg
     8341 ggctgtgtgc tgacgctgcc agcaaccggt tcagaatcca acgcaggcgc ggtgatctcc
     8401 cgtaaaacca ctggcgacaa gcaggcgttc cattctgccc atgttcagcc ggtatttgcc
     8461 gtgctcgatc cggtttatac ctacaccctg ccgccgcgtc aggtggctaa cggcgtagtg
     8521 gacgcctttg tacacaccgt ggaacagtat gttaccaaac cggttgatgc caaaattcag
     8581 gaccgtttcg cagaaggcat tttgctgacg ctgatcgaag atggtccgaa agccctgaaa
     8641 gagccagaaa actacgatgt gcgcgccaac gtcatgtggg cggcgacgca ggcgctgaac
     8701 ggtttgattg gcgctggcgt accgcaggac tgggcaacgc atatgctggg ccacgaactg
     8761 actgcgatgc acggtctgga tcacgcgcaa acactggcta tcgtcctgcc tgcactgtgg
     8821 aatgaaaaac gcgataccaa gcgcgctaag ctgctgcaat atgctgaacg cgtctggaac
     8881 atcactgaag gttccgacga tgagcgtatt gacgccgcga ttgccgcaac ccgcaatttc
     8941 tttgagcaat taggcgtgcc gacccacctc tccgactacg gtctggacgg cagctccatc
     9001 ccggctttgc tgaaaaaact ggaagagcac ggcatgaccc aactgggcga aaatcatgac
     9061 attacgttgg atgtcagccg ccgtatatac gaagccgccc gctaagcttt ttacgcctca
     9121 aactttcgtt ttcgggcatt tcgtccagac ttaagttcac aacacctcac cggagcctgc
     9181 tccggtgagt tcatataaag gaggaacgta tggctaatcc aaccgttatt aagctacagg
     9241 atggcaatgt catgccccag ctgggactgg gcgtctggca agcaagtaat gaggaagtaa
     9301 tcatcgccat tcaaaaagcg ttagaagtgg gttatcgctc gattgatacc gccgcggcct
     9361 acaagaacga agaaggtgtc ggcaaagccc tgaaaaatgc ctcagtcaac agagaagaac
     9421 tgttcatcac cactaagctg tggaacgacg accacaagcg cccccgcgaa gccctgctcg
     9481 acagcctgaa aaaactccag cttgattata tcgacctcta cttaatgcac tggcccgttc
     9541 ccgctatcga ccattatgtc gaagcatgga aaggcatgat cgaattgcaa aaagagggat
     9601 taatcaaaag catcggcgtg tgcaacttcc agatccatca cctgcaacgc ctgattgatg
     9661 aaactggcgt gacgcctgtg ataaaccaga tcgaacttca tccgctgatg caacaacgcc
     9721 agctacacgc ctggaacgcg acacacaaaa tccagaccga atcctggagc ccattagcgc
     9781 aaggagggaa aggcgttttc gatcagaaag tcattcgcga tctggcagat aaatacggca
     9841 aaaccccggc gcagattgtt atccgctggc atctggatag cggcctggtg gtgatcccga
     9901 aatcggtcac accttcacgt attgccgaaa actttgatgt ctgggatttc cgtctcgaca
     9961 aagacgaact cggcgaaatt gcaaaactcg atcagggcaa gcgtctcggt cccgatcctg
    10021 accagttcgg cggctaacat gcaaattctc ccggtggcgg taatgttccg ctaccggact
    10081 tttcagaaat catttattcc cctcgcgtcc cgcccgttgt tactcttcct tgttcaggaa
    10141 tgccaaatat aaggacatca tcatgcagag ccggaagctc ttaaaagaac aactcatcta
    10201 tatccgggat aaacgcaacg gagaggtgaa aaacagatga aaataatact tctgttttta
    10261 gcagccctgg caagttttac cgtacacgcg cagcctcctt cacagaccgt agaacaaaca
    10321 gtccggcaga tttatcagaa ctataaatca gatgccagta cgccttattt cggtgaaacc
    10381 ggagagcggg cgataacttc agcgcgtatt caacaggcgc ttaccctgaa cgacaatctt
    10441 acgctgccgg gcaatattgg ctggctggat tatgatccgg tttgtgattg tcaggatttt
    10501 ggcgatctgg tgctagaaag cgttgcgata acccaaactg acgccgatca tgccgatgcc
    10561 gttgtgcgct ttcgtatctt taaagatgat aaagaaaaga ccacgcagac actgaaaatg
    10621 gtggcggaaa atggtcgttg ggtcattgac gatattgtca gcaatcatgg cagtgtctta
    10681 caagcagtta atagcgagaa tgaaaaaacg ctggccgctt tagcttcgtt gcaaaaagaa
    10741 cagccggaag cctttgttgc cgaactcttt gaacatattg ctgattatag ctggccgtgg
    10801 acgtgggtgg tttccgactc ttaccgccag gcggttaatg ccttctataa aaccaccttc
    10861 aagacggcca ataatcccga tgaagatatg caaatagaac ggcaatttat ttacgacaat
    10921 ccgatctgtt ttggcgaaga gtcgctattt tcacgcgttg atgaaattcg agtcctggag
    10981 aaaaccgccg attccgcccg cattcatgtt cgttttacgc tgaccaatgg caacaacgaa
    11041 gagcaagaac tggttttaca gcggcgcgaa ggcaagtggg aaatcgctga ttttatccgc
    11101 ccgaacagcg gcagcctact taagcagatt gaggcaaaaa ctgccgccag attaaagcaa
    11161 tgagctgaat taaataacaa ttagccggaa caataaataa aagggaacac tatatgaaaa
    11221 cgattttcac cgtgggagct gttgttctgg caacctgctt gctcagtggc tgcgtcaatg
    11281 agcaaaaggt caatcagctg gcgagcaatg tgcaaacatt aaatgccaaa atcgcccggc
    11341 ttgagcagga tatgaaagca ctacgcccac aaatctatgc tgccaaatcc gaagctaaca
    11401 gagccaatac gcgtcttgat gcacaggact attttgattg cctgcgctgc ttgcgtatgt
    11461 acgcagaatg ataaaaaaat ccccggcagc atgtcagttg ccgggttata ggctgtttgc
    11521 taaaaaaaag ccaaacataa ggacatgatt atgcgacgct ggcacacctg tttttttatt
    11581 ctgctgttct gtggcttcag cggaaacgtg ttgtgcaaag aatcgattaa tgaagcgata
    11641 gaacgtttgt accaaccatt gaccagtaat gacgatatac caataaccga tgaattcagt
    11701 ctcgatttgc gaagtaatat gagcgctact cctggcaaaa tgacaccctg gctgaataat
    11761 aatcttttgt gtcgctgtgt cgatgacgct ttcgtttctg cagaaataat ccaaagcaca
    11821 cacctaaatg gcggccgaac gcatgtactg ttgcagctgg ttatcaaaca aaatcgcaca
    11881 gatatccacc ggttactggg gctaatgctg gttcgtgaaa atgataatca tcgttggcta
    11941 atagaagaca tcgatg
//
LOCUS       DAJVUP010000130        11926 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.130, whole genome shotgun sequence.
ACCESSION   DAJVUP010000130 DAJVUP010000000
VERSION     DAJVUP010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11926
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.130"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            217..1326
                     /gene="livK"
                     /locus_tag="OQQ75_003167"
     CDS             217..1326
                     /gene="livK"
                     /locus_tag="OQQ75_003167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter substrate-binding protein LivK"
                     /protein_id="HCS1977403.1"
                     /translation="MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDM
                     EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK
                     PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID
                     FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYD
                     QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGA
                     NTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK"
     gene            1374..2300
                     /gene="livH"
                     /locus_tag="OQQ75_003168"
     CDS             1374..2300
                     /gene="livH"
                     /locus_tag="OQQ75_003168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010436488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivH"
                     /protein_id="HCS1977404.1"
                     /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG
                     EVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNS
                     KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVI
                     WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV
                     AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS
                     TEYKDVVSFALLILVLLVMPTGILGRPEVEKV"
     gene            2297..3574
                     /gene="livM"
                     /locus_tag="OQQ75_003169"
     CDS             2297..3574
                     /gene="livM"
                     /locus_tag="OQQ75_003169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     permease LivM"
                     /protein_id="HCS1977405.1"
                     /translation="MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIR
                     WQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVA
                     WPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY
                     GLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG
                     PNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSL
                     FVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQ
                     GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGG
                     LMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA"
     gene            3571..4338
                     /gene="livG"
                     /locus_tag="OQQ75_003170"
     CDS             3571..4338
                     /gene="livG"
                     /locus_tag="OQQ75_003170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivG"
                     /protein_id="HCS1977406.1"
                     /translation="MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGK
                     TTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL
                     VAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR
                     RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM
                     GISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA"
     gene            4340..5053
                     /gene="livF"
                     /locus_tag="OQQ75_003171"
     CDS             4340..5053
                     /gene="livF"
                     /locus_tag="OQQ75_003171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivF"
                     /protein_id="HCS1977407.1"
                     /translation="MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGK
                     TTLLGTLCGDPRAASGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA
                     MGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLL
                     LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS
                     DTGDALLANEAVRSAYLGG"
     gene            5450..6121
                     /locus_tag="OQQ75_003172"
     CDS             5450..6121
                     /locus_tag="OQQ75_003172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000803216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HCS1977408.1"
                     /translation="MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSL
                     AQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK
                     PVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
                     DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENRHLPGDRRRHVRRAGSGH
                     HDADL"
     gene            6051..6254
                     /locus_tag="OQQ75_003173"
                     /pseudo
     CDS             6051..6254
                     /locus_tag="OQQ75_003173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099274.1"
                     /note="with UgpEC is involved in the uptake of
                     glycerol-3-phosphate; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter permease"
     gene            6251..7096
                     /gene="ugpE"
                     /locus_tag="OQQ75_003174"
     CDS             6251..7096
                     /gene="ugpE"
                     /locus_tag="OQQ75_003174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HCS1977409.1"
                     /translation="MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAA
                     PMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAI
                     VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATTTF
                     LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWP
                     LLIITDVDLGTTVAGIKGMIATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGL
                     VDSEK"
     gene            7098..8168
                     /gene="ugpC"
                     /locus_tag="OQQ75_003175"
     CDS             7098..8168
                     /gene="ugpC"
                     /locus_tag="OQQ75_003175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol 3-phosphate ABC transporter ATP
                     binding protein UgpC"
                     /protein_id="HCS1977410.1"
                     /translation="MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKS
                     TLLRMVAGLERVTEGDIWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLK
                     IRGMGKQQIAERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDE
                     PLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGT
                     PVEVYEKPASLFVASFIGSPAMNLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKM
                     TLGIRPEHIVLSSQAEGGVPLVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGS
                     TLWLHLAENQLHLFDGETGQRV"
     gene            8165..8908
                     /gene="ugpQ"
                     /locus_tag="OQQ75_003176"
     CDS             8165..8908
                     /gene="ugpQ"
                     /locus_tag="OQQ75_003176"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1977411.1"
                     /translation="MSNWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKL
                     SKDGEIFLLHDDNLERTSNGWGVVGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAE
                     RCREHGMMANIEIKPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQLAA
                     PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKP
                     QRAAELLRWGVDCICTDAIDVIGPNFTAQ"
     gene            complement(8895..9335)
                     /locus_tag="OQQ75_003177"
     CDS             complement(8895..9335)
                     /locus_tag="OQQ75_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2756 family protein"
                     /protein_id="HCS1977412.1"
                     /translation="MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQ
                     TQQIQQKGMLNQQLKTQTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGG
                     MLNSNRNPDSSLNQQHMLPERRNGDMLNQPSTPQPDIPLKTIGP"
     gene            9455..11188
                     /gene="ggt"
                     /locus_tag="OQQ75_003178"
     CDS             9455..11188
                     /gene="ggt"
                     /locus_tag="OQQ75_003178"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HCS1977413.1"
                     /translation="MIKPTFLRRVAIAALLSGSCFSAVAAPPVSYGVEEDIFHPVRAK
                     QGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKN
                     GNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGT
                     MPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDK
                     LVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPIS
                     GDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADR
                     SEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAQPSSEIRPGKLAPYESNQTTHYS
                     VVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANA
                     VGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGMNVAEATNA
                     PRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYGASD
                     PRSVDDLTAGY"
     gene            complement(11226..11510)
                     /locus_tag="OQQ75_003179"
                     /pseudo
     CDS             complement(11226..11510)
                     /locus_tag="OQQ75_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417903.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YrhB family protein"
     gene            complement(11710..11865)
                     /locus_tag="OQQ75_003180"
     CDS             complement(11710..11865)
                     /locus_tag="OQQ75_003180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977414.1"
                     /translation="MEKLTTELHSLSEMDRRHVVSILAEIANGYDDFNDMLIYLEFYP
                     NHKILIS"
BASE COUNT         2707 a         2956 c         3387 g         2876 t
ORIGIN      
        1 caaaggcact tttttctgtt tatctatcaa taaattcaga atattatctg ttcttaatcg
       61 actgaaagat agggatttta atcactatta tcacaaaata ctgcgctaaa cccttaatca
      121 gacaggcaaa aacagtgcag tataaaaaaa gaacagtctg atttgttaac acataaaaac
      181 aaagcaacac aacatcacga atggggattt ttgactatga aacggaatgc gaaaactatc
      241 atcgcaggga tgattgcact ggcaatttca cacaccgcta tggctgacga tattaaagtc
      301 gccgttgtcg gcgcgatgtc cggcccgatt gcccagtggg gcgatatgga atttaacggc
      361 gcgcgtcagg cgattaaaga cattaatgcc aaagggggaa ttaagggcga caagctggtt
      421 ggcgtggaat atgacgacgc ctgcgacccg aaacaagccg ttgcggtcgc caacaaaatc
      481 gttaatgacg gcattaaata cgttattggt catctgtgtt cttcttctac ccaacctgca
      541 tcagatatct acgaagacga aggtattctg atgatctcac cgggagcgac caacccggag
      601 ctgacccaac gcggttatca acacattatg cgtactgccg ggctggactc ttcccagggg
      661 ccaacggcgg caaaatacat tcttgagacg gtgaagcccc agcgcatcgc catcattcac
      721 gacaaacaac agtatggcga agggctggcg cgttcggtgc aggacgggct gaaagcggct
      781 aacgccaacg tcgtcttctt cgacggtatt accgccgggg agaaagattt ctccgcgctg
      841 atcgcccgcc tgaaaaaaga aaacatcgac ttcgtttact acggcggtta ctacccggaa
      901 atggggcaga tgctgcgcca ggcccgttcc gttggcctga aaactcagtt tatggggccg
      961 gaaggtgtgg gtaacgcatc attgtcgaat attgccggtg atgctgccga aggcatgttg
     1021 gtcactatgc caaaacgcta tgaccaggat ccggcaaacc agggcatcgt tgatgcgctg
     1081 aaagcagaca agaaagatcc gtccgggcct tatgtctgga tcacctacgc ggcggtgcaa
     1141 tctctggcga ctgcccttga gcgtactggc agcgatgagc cgctggcgct ggtgaaagat
     1201 ttaaaagcta acggtgcaaa caccgtgatt gggccgctga actgggatga aaaaggcgat
     1261 cttaagggat ttgattttgg tgtcttccag tggcacgccg acggttcatc cacggcagcc
     1321 aagtgatcat cccaccgccc gtaaaatgcg ggcgggttta gaaaggttac cttatgtctg
     1381 agcagttttt gtatttcttg cagcagatgt ttaacggcgt cacgctgggc agtacctacg
     1441 cgctgatagc catcggctac accatggttt acggcattat cggcatgatc aacttcgccc
     1501 acggcgaggt ttatatgatt ggcagctacg tctcatttat gatcatcgcc gcgctgatga
     1561 tgatgggcat tgataccggc tggctgctgg tggcggcggg attcgtcggc gcaatcgtca
     1621 ttgccagcgc ctacggctgg agtatcgaac gggtagccta tcgcccggtg cgtaactcta
     1681 agcgcctgat tgcgctcatc tcggcaatcg gcatgtccat cttcctgcaa aactacgtta
     1741 gcctgactga aggttcgcgt gacgtggcgc tgcccagtct gtttaacggt cagtgggtgg
     1801 tggggcatag cgaaaacttc tctgcctcta ttaccaccat gcaggcagtg atctggattg
     1861 ttactttcct cgccatgctg gcgctgacga ttttcattcg ttattcccgt atggggcgcg
     1921 cctgccgtgc ctgcgcggaa gatctgaaaa tggcgagcct gcttggcatc aacaccgacc
     1981 gggtgattgc tttgaccttt gttattggcg cggcgatggc ggcagtggct ggcgtactgc
     2041 tcggtcagtt ctacggcgtc attaacccct atatcggctt tatggccggg atgaaagcct
     2101 ttaccgctgc ggtgctcggt gggattggca gcattccagg ggcgatgatt ggtgggctga
     2161 tcctggggat tgcggaggcg ctctcttctg cctatctgag tacggaatat aaggatgtgg
     2221 tttcatttgc cctgctgatt ctggtgctgc tggtgatgcc gaccggtatt ctgggtcgcc
     2281 cggaggtaga gaaagtatga aaccgatgca tattgcaatg gcgctgctct ctgccgcgat
     2341 gttttttgtc ctggcgggcg tctttatggg cgtgcaactg gagctggatg gcaccaaact
     2401 ggtggtcgac acggcttcag acatccgttg gcagtgggtg tttatcggca cggcggtggt
     2461 ctttttcttc cagcttttgc gaccggcttt ccagaaaggg ctaaaaagcg tttccggacc
     2521 gaagtttatt ctgcccgcga ttgatggctc cacggtgaag cagaaactgt tcctcgtggc
     2581 gctgttggtg cttgcggtgg cgtggccgtt tatggtgtca cgtgggacgg tggatatcgc
     2641 cactctgacc atgatctaca ttatcctcgg tctcgggctg aatgtggttg ttggtctttc
     2701 tggtctgctg gtgctggggt acggcggttt ttacgccatc ggcgcttaca cctttgcgct
     2761 gctcaatcac tattacggct tgggcttctg gacttgtctg ccgattgccg ggttaatggc
     2821 agcggcggcg ggcttcctgc tcggctttcc ggtgctgcgt ctgcgcggtg attatctggc
     2881 gatcgttacc ctcggcttcg gcgaaattgt gcgcatattg ctgctcaata acaccgaaat
     2941 taccggcggc ccgaacggaa tcagtcagat cccgaaaccg actttcttcg gccttgagtt
     3001 cagccgtacc gcccgtgaag gcggttggga cacgttcagt aatttctttg gcctgaaata
     3061 cgatccctcc gatcgcgtca tcttcctgta tctggtggcg ttgctgctgg tggtgctaag
     3121 cctgtttgtc attaaccgcc tgctgcggat gccgctgggg cgtgcgtggg aagcgttgcg
     3181 tgaagatgag atcgcctgcc gttcgctggg cttaagcccg cgtcgtatca agctgaccgc
     3241 ttttaccatc agtgccgcgt ttgccggttt tgccggaacg ctgtttgctg cgcgccaggg
     3301 ctttgtcagc ccggaatcct tcacctttgc tgaatcggcg tttgtactgg cgatagtggt
     3361 gctcggcggt atgggatcgc agtttgcggt gattctggcg gcaattttgc tggtggtgtc
     3421 gcgcgagttg atgcgtgatt tcaacgaata cagcatgtta atgctcggtg gtttgatggt
     3481 gctgatgatg atctggcgtc cgcagggctt gctgcccatg acgcgcccgc aactgaagct
     3541 gaaaaacggc gcagcgaaag gagagcaggc atgagtcagc cattattatc tgtgaacggc
     3601 ctgatgatgc gcttcggcgg cctgctggcg gtgaacaacg tcaatcttga actgtacccg
     3661 caggagatcg tctcgttaat cggtcctaac ggtgccggaa aaaccacggt ctttaactgc
     3721 ctgaccggat tctacaaacc cactggaggc accattttac tgcgcgatca gcatctggaa
     3781 ggtttaccgg ggcagcaaat tgcccgcatg ggcgtggtgc gtaccttcca gcatgtgcgt
     3841 ctgttccgtg aaatgacggt gattgaaaac ctgctggtgg cgcagcatca gcaactgaaa
     3901 accgggctgt tctctggcct gttgaaaacg ccatccttcc gtcgcgccca gagcgaagcg
     3961 ctcgatcgcg ccgcgacctg gcttgagcgc attggtttgc tggaacacgc caaccgtcag
     4021 gcgagtaacc tggcctatgg tgaccagcgc cgtcttgaga ttgcccgctg catggtgacg
     4081 cagccggaga ttttaatgct cgacgaacct gcggcaggtc ttaacccgaa agagacgaaa
     4141 gagctggatg agctgattgc cgaactgcgc aatcatcaca acaccactat cttgttgatt
     4201 gaacacgata tgaagctggt gatgggaatt tcggaccgaa tttacgtggt caatcagggg
     4261 acgccactgg caaacggtac gccggagcaa atccgtaata acccggacgt gatccgtgcc
     4321 tatttaggtg aggcataaga tggaaaaagt catgttgtcc tttgacaaag tcagcgccca
     4381 ctacggcaaa atccaggcac tgcatgaggt gagcctgcat atcaatcagg gcgagattgt
     4441 cacgctgatt ggcgcgaacg gggcggggaa aaccaccttg ctcggcacgt tatgcggcga
     4501 tccgcgcgcc gccagcgggc gaattgtgtt tgatgataaa gacattaccg actggcagac
     4561 ggcgaaaatc atgcgcgaag cggtagcgat tgtcccggaa gggcgtcgcg tcttctcgcg
     4621 gatgacggtg gaagagaacc tggcgatggg cggctttttt gccgaacgcg accagttcca
     4681 ggagcgcata aagtgggtgt atgaactgtt tccacgtctg catgagcgcc gtgttcagcg
     4741 ggcaggcacc atgtccggcg gtgagcaaca aatgctggcg attggtcgcg cgctgatgag
     4801 caacccgcgt ttgctgctac ttgatgagcc atcgctcggt cttgcgccga ttatcatcca
     4861 gcaaattttc gacaccatcg agcagctgcg cgagcagggg atgactatct tcctcgtcga
     4921 gcagaacgcc aaccaggcgc taaagctggc ggatcgcggc tacgtgctgg aaaacggcca
     4981 tgtggtgctc tccgataccg gcgatgcgct gctggcgaac gaagcagtga gaagtgcgta
     5041 tttaggcggg taataacacg ttgattgata aggagtcaaa agactccttt gagacaggtg
     5101 acaaatgtaa aattgcctga tgcgctgcgc ttatcaggcc tactgggtga gttgcaatat
     5161 attgaatttg cacgatcttg taggccggat aaggcgttta cgccgcatcc ggcatgaaac
     5221 gatgagtaat ctgtagagtt tgattcagac cttctatttt tccgcttatc cgtgccccat
     5281 ctcccatttt ccctcaccca cgccgtcacc gccttgtcat ctttctgaca ccttactatc
     5341 ttacaaatgt aacaaaaaag ttatttttct gtaattcgag catgtcatgt taccccgcga
     5401 gcataaaacg cgtgaattcg cgcattcggt acaacaagag agataaacga tgaaaccgtt
     5461 acattataca gcttcagcac tggcgctcgg actggcgtta atggggaatg cacaggcagt
     5521 gacgaccatt ccgttctggc attctatgga aggggaactg ggtaaagagg tggattctct
     5581 ggcccaacgt tttaacgccg aaaatccgga ttacaaaatt gtaccgacct ataaaggcaa
     5641 ctacgaacag aatttaagcg cggggattgc cgcatttcgt accggcaacg ctccggctat
     5701 tttgcaggtt tatgaagttg gcaccgccac catgatggca tcgaaagcca ttaaaccggt
     5761 atatgacgtg tttaaagagg cggggattca attcgatgag tcgcagtttg tgccgacggt
     5821 ttccggttac tactccgaca gcaaaacggg ccacttactc tcccagccat tcaacagctc
     5881 gactcccgtt ctctattaca acaaagacgc cttcaagaaa gcggggttag acccggaaca
     5941 gccgccgaaa acctggcagg atctggcgga ctatgccgcg aaactgaaag cctccggcat
     6001 gaagtgcggc tacgccagcg gctggcaggg ctggatccaa ctggaaaatc gacaccttcc
     6061 cggtgatcga cgccgccacg tccggcgggc cggttcaggc caccacgacg ctgatttata
     6121 agatctaccg cgaaggtttt accggactgg atctggcttc gtctgccgca cagtcggtgg
     6181 tgttgatgtt cctcgtcatc gtgctgacgg tggtgcagtt ccgctatgtt gaaagcaagg
     6241 tgcgttacca atgattgaga accgtccgtg gctgacgata ttcagccata ccatgctgat
     6301 cctcgggatc gcggtgattc tcttcccgct gtacgtggcg tttgtcgcgg cgacgctgga
     6361 taaacaggcc gtctatgccg cgccgatgac gctcatcccc ggcacacatc tgctggaaaa
     6421 tatccacaac atctgggtta acggggtagg tacgaatagc gcgccgttct ggcggatgtt
     6481 gcttaacagc tttgtgatgg cgttcagcat tacgctcggc aaaattaccg tctcgatgct
     6541 ctcggcattt gccattgtct ggtttcgttt tccgctacgt aacctcttct tctggatgat
     6601 ttttatcacc ctgatgctgc cggttgaagt acgtatcttc ccgacggtgg aagtcatcgc
     6661 caacctgaag atgctcgaca gctacgccgg tttaacgctg ccgctgatgg cctcggcgac
     6721 caccacgttt ctgtttcgcc agttctttat gacgctgccg gatgaactgg tggaagcggc
     6781 gcggatcgac ggcgcatcgc caatgcgctt cttttgcgac atcgtttttc cgctctccaa
     6841 aactaatctg gcggcgctgt ttgtgatcac ctttatttac ggctggaacc agtatttgtg
     6901 gccgttgttg attattaccg acgtggatct cggcaccacc gtggcaggga tcaaagggat
     6961 gatcgccact ggcgaaggca ccacggaatg gaactcagtg atggcggcga tgttgttaac
     7021 cctgatccca ccagtagtga ttgttttagt gatgcagcgt gccttcgtgc gcggcctggt
     7081 cgatagtgag aaataagatg gcaggactga aattacaggc agtaaccaaa agctgggatg
     7141 gcaaaaccca ggtcattaaa ccgctgaccc ttgatgtggc tgatggcgaa tttatcgtga
     7201 tggtcgggcc gtctggctgc gggaaatcga cgctgctgcg tatggttgcc gggctggagc
     7261 gggtgaccga aggcgatatc tggatcaacg accagcgcgt gactgaaatg gagccgaaag
     7321 atcgcgggat tgcgatggtg ttccagaact acgcgcttta tccgcatatg agcgtcgaag
     7381 aaaacatggc gtgggggctt aaaattcgcg gcatgggcaa gcagcaaatt gccgagcgcg
     7441 ttaaagaagc ggcgcgcatt ctggagctgg acggtctgct caaacgtcgc ccgcgtgagc
     7501 tatccggcgg tcagcgtcag cgtgtagcga tgggccgcgc gattgtgcgc gatccggcgg
     7561 tgttcctgtt tgatgagccg ctctctaacc tcgatgccaa gctgcgcgtg cagatgcgtc
     7621 ttgaactgca acagttgcac cgtcgcctga aaacgacttc actctacgtt actcacgatc
     7681 aggttgaagc gatgacgctc gcccagcgag taatggtgat gaacggcggc gttgccgaac
     7741 agattggcac accagttgaa gtctacgaaa agcccgccag cctgtttgta gcgagtttta
     7801 tcggcagtcc ggcgatgaac ctgctgacag gccgcgtgaa taacgaaggc acgcatttcg
     7861 aactggacgg cggtattgag ctgccgctaa acggtggcta ccgtcagtat gccgggcgta
     7921 aaatgactct cggcattcgc ccggaacata ttgtgctaag ctcgcaggca gaaggcggcg
     7981 taccgctggt gatggacacg ctggagatcc tcggcgcaga taacctggcg cacggacgct
     8041 ggggcgagca gaagctggtg gtgcgactgg cgcatcagga gcgcccgacg gcaggcagca
     8101 cgctgtggct gcatctggcg gaaaatcagc tgcatctttt tgatggtgaa acaggacaac
     8161 gagtatgagt aactggcctt atccccgcat cgtcgctcat cgtggcggcg gtaagctggc
     8221 cccggaaaac accctggcgg caatcgacgt cggggcaaaa tacggtcata agatgatcga
     8281 atttgacgcg aagttatcga aagatggcga gatcttcctg ctccatgacg acaatctcga
     8341 acgcaccagc aacggctggg gcgtcgtggg tgaactgaac tggcaggatt tactgcgcgt
     8401 ggatgcgggc agttggtaca gcaaagcgtt taaaggtgag ccgctgccgt tgctttcgca
     8461 ggtggcggaa cgctgtcgcg aacatgggat gatggcgaat atcgaaatca aacccaccac
     8521 tggcactgga ccattaacgg gcaaaatggt ggcgctggcg gcacgccaac tgtgggccgg
     8581 tatgacgccg ccgctgctgt catcgtttga gattgatgct ttagaagctg cacagctggc
     8641 ggcaccggaa ctgccgcgtg gtttattgct tgatgagtgg cgcgacgact ggcgcgaact
     8701 gaccgcgcgg ctgggctgcg tctctattca tctcaatcat aagttactcg ataaagcgcg
     8761 agtgatgcag ttgaaagacg ccggattacg gattctggtt tataccgtca ataaacccca
     8821 gcgcgcggca gagttgctgc gctggggcgt ggattgcatc tgtaccgatg cgattgacgt
     8881 gattggtccg aactttacgg cccaatagtt ttcaacggaa tgtcaggctg cggcgtgctg
     8941 ggctgattca gcatgtcgcc gtttctcctc tccggcagca tatgctgctg attcaacgaa
     9001 ctatccggat tacggttgct gtttaacatc ccgccgttgg tgttgggcag catttgctgc
     9061 cgggcgggat ttcgctcccc cggctgtgac tgcaacaccc gctgagaatt attgtttatc
     9121 tggttttcta aatgctgctg ttgcaactga gtttgcgttt tcagttgctg attcagcatc
     9181 cctttttgct ggatttgctg agtttgcatc tgggtttgca tccgctgctg gctgggtatc
     9241 tgataccccg gctggttagg gttgttcaga gtattaatgg gctgtgcaaa gccgacaaac
     9301 ggcaggagtg ccgtaagaat cagaagtcgt ttcatcgcgt atcctcctct gaagatatcc
     9361 tttaagttta ctcgcttccc gacaaaacga tgattaattc agagttatat accaggctta
     9421 gctggggttg ccccttaatc tctggagaat aacgatgata aaaccgacgt ttttacgccg
     9481 ggtagccatt gctgctctgc tctcaggaag ttgttttagc gccgtcgccg cgcctcctgt
     9541 ttcttacggc gtggaggaag atatcttcca tccggtacgc gcgaaacagg ggatggtggc
     9601 gtctgtcgat gccactgcca cccaagtggg ggtagatatt ctaaaggagg gcgggaatgc
     9661 cgttgatgcc gccgtggcgg tgggctacgc gctggcggta acgcatccgc aggcagggaa
     9721 tctgggcggt ggtggtttta tgctgatccg ctcgaaaaat ggcaatacca ccgctatcga
     9781 tttccgcgag atggcacccg ctaaagcgac ccgcgatatg ttccttgatg accagggcaa
     9841 cccggacagc aaaaaatcac tcacttcgca tctggcttcc ggcacgcccg gtacggtcgc
     9901 tggtttctcg ctggcgttgg ataagtacgg cactatgccg ttgaacaaag tggtgcagcc
     9961 cgcgttcaaa ctggcacgcg atggttttat cgttaacgat gctttggcag acgatctcaa
    10021 aacctacggt agtgaagtgt tgccgaatca cgaaaacagc aaagctatct tctggaaaga
    10081 gggcgaaccg ctgaaaaagg gcgacaagct ggtgcaggcg aacctggcaa agagcctgga
    10141 gatgattgcc gaaaacggcc cggacgaatt ctataaaggc acgatagcgg aacagattgc
    10201 ccaggagatg cagaaaaacg gtggcttgat cactaaagaa gatttagcgg cgtataaagc
    10261 ggtcgaacgc acaccgataa gtggcgatta tcgcgggtat caggtttact ccatgccacc
    10321 gccatcctcc ggcgggatcc atatcgtaca aatcctcaat attctggaaa acttcgatat
    10381 gaagaaatac ggctttggca gcgccgatgc gatgcaaatc atggcagaag cggagaaata
    10441 cgcctacgcc gaccgctcgg aatatcttgg cgacccggat tttgtcaaag taccgtggca
    10501 ggcgctgacc aataaagcct atgccaaatc tattgccgat caaattgata tcaataaagc
    10561 gcagccatcc agcgaaattc gccccggcaa gcttgcgcct tatgagagta atcaaactac
    10621 ccattactca gtggtggata aagatggtaa cgcggtggcg gtgacctata cgctgaacac
    10681 caccttcggt acgggcattg tcgcgggcga gagcggtatt ctgcttaata atcagatgga
    10741 tgatttctcc gctaaaccgg gcgtaccgaa cgtttacggg ctggtgggcg gtgatgccaa
    10801 cgccgtcggg ccgaataaac gtccgctgtc gtcaatgtca ccaacgattg tggtgaaaga
    10861 cggtaaaacc tggctggtca ccggtagccc tggcgggagc cggatcatca ctacagtgct
    10921 gcaaatggtg gtgaatagca tcgattatgg catgaacgtc gccgaagcga ccaatgcgcc
    10981 gcgtttccac catcagtggt tgccggacga gctgcgtgtc gaaaaagggt ttagcccgga
    11041 tacgctcaag ctgctggaag caaaaggtca gaaagtggcg ctgaaagagg cgatgggcag
    11101 tacacaaagc attatggttg ggccggacgg tgagttgtac ggcgcatccg acccgcgctc
    11161 ggtggatgat ttaacggcgg ggtactaagg ttagcggccc tcttcgtggg aagagggcta
    11221 ttttgtcagg gcaagccgaa ggtagccttt tttatttcgt aatcctgtag atattcttcc
    11281 agcggctttg ccgttcccag agaatgaatt tcaccactgt ctttatcaat aataaaaggt
    11341 gcgttaccag ctaagcgcgc ggcctcatct ccagtttcga gaaattctcg tgcttcgaaa
    11401 cagaaatacc agccctagct aaagcgtcca tgtagagtaa tgacgaccgg gagatctgca
    11461 tcatcaaggt aatggttcgc tttcgcgaat gcgtcgtgat aagtaatcat aattataata
    11521 aatattattg ttgagtgtta tattattatt cctgtgtgat acattgagca aagacgcgtt
    11581 catcttcgtc aaagatatta ttaaatgctg gttttgaaaa aagttcatcg gataagatat
    11641 agtcacgaaa taagtatctg ctaatatttt atgatttctt tttcagaacg tcgaacggga
    11701 ttttcttatt taagatatca gaatcttatg attcgggtaa aattctaaat aaatcaacat
    11761 gtcattaaaa tcatcatagc cattagctat ttcggctaaa atagagacta catgtcttcg
    11821 gtccatctca cttaaggagt gtagttccgt tgtaagtttt tccatagctt gcactgctaa
    11881 atttcgaaca aggaattttc tgctggtaat ctctaaaaag atggca
//
LOCUS       DAJVUP010000131        11885 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.131, whole genome shotgun sequence.
ACCESSION   DAJVUP010000131 DAJVUP010000000
VERSION     DAJVUP010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11885
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.131"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(39..353)
                     /locus_tag="OQQ75_003181"
                     /pseudo
     CDS             complement(39..353)
                     /locus_tag="OQQ75_003181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418152.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
     gene            complement(468..866)
                     /locus_tag="OQQ75_003182"
     CDS             complement(468..866)
                     /locus_tag="OQQ75_003182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HCS1977415.1"
                     /translation="MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGL
                     GAILSTWLSNQQSNQSVSGEQLESAPGTNAVSDLGQKLGVDTSTASSLLAEQLPKIID
                     ALSPQGEVSSQANNDLLSAGMELLKGKLFR"
     gene            complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="OQQ75_003183"
     CDS             complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="OQQ75_003183"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HCS1977416.1"
                     /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET
                     EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY
                     EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR
                     DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS
                     QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT
                     RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
                     LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT
                     LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL
                     HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ
                     TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI
                     TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYK
                     GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFTTLMGDAVEPRRAFIEENALK
                     AANIDI"
     gene            complement(3549..4622)
                     /gene="recF"
                     /locus_tag="OQQ75_003184"
     CDS             complement(3549..4622)
                     /gene="recF"
                     /locus_tag="OQQ75_003184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HCS1977417.1"
                     /translation="MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY
                     TLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG
                     HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQ
                     RNAALRQVTRYEQLRPWDKELIPLVEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF
                     SFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL
                     LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA
                     EHVIDMSDENSKMFTVEKGKITD"
     gene            complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="OQQ75_003185"
     CDS             complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="OQQ75_003185"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006177590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HCS1977418.1"
                     /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL
                     TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG
                     RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF
                     ETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI
                     GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE
                     KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE
                     NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL"
     gene            complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="OQQ75_003186"
     CDS             complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="OQQ75_003186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HCS1977419.1"
                     /translation="MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN
                     RFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVA
                     QTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADN
                     PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNA
                     IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIN
                     GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVR
                     ELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
                     DLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
                     SHDIKEDFSNLIRTLSS"
     gene            7427..7507
                     /locus_tag="OQQ75_003187"
     CDS             7427..7507
                     /locus_tag="OQQ75_003187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977420.1"
                     /translation="MTIDKNWLNRSNKDPGRSLRFTHQPV"
     gene            7737..7877
                     /gene="rpmH"
                     /locus_tag="OQQ75_003188"
     CDS             7737..7877
                     /gene="rpmH"
                     /locus_tag="OQQ75_003188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HCS1977421.1"
                     /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV
                     SK"
     gene            7894..8253
                     /gene="rnpA"
                     /locus_tag="OQQ75_003189"
     CDS             7894..8253
                     /gene="rnpA"
                     /locus_tag="OQQ75_003189"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014172301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HCS1977422.1"
                     /translation="MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGH
                     PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS
                     EALEKLWRRHCRLARGS"
     gene            8217..8474
                     /gene="yidD"
                     /locus_tag="OQQ75_003190"
     CDS             8217..8474
                     /gene="yidD"
                     /locus_tag="OQQ75_003190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HCS1977423.1"
                     /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA
                     LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH"
     gene            8477..10123
                     /gene="yidC"
                     /locus_tag="OQQ75_003191"
     CDS             8477..10123
                     /gene="yidC"
                     /locus_tag="OQQ75_003191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HCS1977424.1"
                     /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA
                     GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET
                     SPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT
                     FTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPPHLDTGSSNFALHTF
                     RGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT
                     ANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW
                     FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKTQYTSMAKMRMLQPKIQA
                     MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP
                     FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW
                     FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS"
     gene            10229..11593
                     /gene="mnmE"
                     /locus_tag="OQQ75_003192"
     CDS             10229..11593
                     /gene="mnmE"
                     /locus_tag="OQQ75_003192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HCS1977425.1"
                     /translation="MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPR
                     YADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPG
                     LRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV
                     EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMK
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE
                     ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR
                     NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH
                     LQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSF
                     CIGK"
     gene            11836..>11885
                     /gene="tnaC"
                     /locus_tag="OQQ75_003193"
     CDS             11836..>11885
                     /gene="tnaC"
                     /locus_tag="OQQ75_003193"
                     /inference="COORDINATES: protein motif:HMM:NF019665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase leader peptide"
                     /protein_id="HCS1977426.1"
                     /translation="MNILHICVTSKWFNID"
BASE COUNT         2719 a         3254 c         3070 g         2842 t
ORIGIN      
        1 ggacaggggt atcgcttagt ttttcaattt cctatacgtg aaccgacttc gcgagagagt
       61 ttttccagga aacgatagtc gtcataactg agagcagttt gcgccacggt gctaccatca
      121 gcggccttct gtaccagcgc gccgttataa gtaatgcagt agtcgcccgg ctgttccata
      181 tgcagctctt tcaggtagtt gtgaacgcct gcataagggc gacccgtcgt tagcacgaca
      241 ttcacgccac gggcgcgagc tgcggcaatc gcatttttaa cggcgggtga aatggtgtga
      301 tcgggcagca gaagggtgcc atccatatcg atagcaatga gtttgatagc catgagttcc
      361 ccaggtagat tagttcctga cccatgctaa cgcgattccg ctcaaaaatc agtacaacac
      421 ccgagggaaa agggggatgc aacgcgggtt gcatgctccc catttgctta gcggaagagt
      481 ttccctttca gcagttccat acctgcggaa agcagatcgt tattggcttg tgaagacact
      541 tcaccttgcg gtgagagcgc atcaataatc ttcggcaatt gttctgccag taaactggaa
      601 gccgtactgg tatccacgcc aagtttttgc ccgagatcgg acaccgcatt tgtgccgggc
      661 gccgattcca gttgctcgcc gctaactgat tgattgctct gctgattact caaccaggtt
      721 gagagaatgg cccctaagcc gccactttgc agtttttcca gcagcacctg aatgccgccc
      781 tgctcctcaa cccaacttaa aatagcctga tatttccccg catcgccttt cagaaaggca
      841 ccgacaactt catcaaaaag ccccatgata atcacctgta aagcgttacg tgttgaccca
      901 aaaagtatag atctgcggga tgataattgc ggattgcaga aataaaaagg gcggagatga
      961 tctccgccct ttttttatag cttcttgccg gatgcggcgt taacgtctta cctggcctac
     1021 aaaatcatta aaattcaata cattgcaaga ttttcgtagg cctgataagc gtagcgcatc
     1081 aggcacgctc gcatggttaa cgccattaaa tatcaatatt cgccgctttc agggcgttct
     1141 cttcaataaa cgcacgacgc ggttctacgg cgtcgcccat cagcgtggtg aacaacaggt
     1201 cagcggcaat cgcatcctta acggtaacgc gcagcatacg acgactttcc gggtccatgg
     1261 tggtttccca cagctgttcc gggttcatct cgcccagacc tttataacgc tggatggaga
     1321 gaccgcgacg agactctttc accagccagt ccagcgcctg ctcgaagctg gctaccggct
     1381 gacgacgctc gccacgttcg ataaatgcat cttcttccag caagccacgc agtttctcac
     1441 ccagcgtgca gatacgacga tattcgccac cagtgataaa ttcgtgatcc agcggatagt
     1501 cagtatccac accgtgggta cgcacgcgaa caatcggctc gaacaggttt tgttcggcat
     1561 tggtgtggac atcaaacttc cactggctgc cgtgctgttc tttgtcgttc agttcgctga
     1621 ccagcgcgtt cacccagcgg gtaacggtct gctcatcaga gaggtcggct tccgtcagcg
     1681 tcggctgata gataagctct ttcagcattg ctttcggata acgacgctcc atgcggttga
     1741 tcattttctg cgtcgcgttg tactcagaca ccagtttctc taacgcttcg ccagccaatg
     1801 ccggtgcgct ggcgttggtg tgcagcgttg cgccgtccag cgcgatagag atctggtact
     1861 gatccatcgc ttcgtcgtct ttaatgtact gttcctgctt gcctttcttc actttgtaca
     1921 gcggcggctg agcgatgtag acgtgaccgc gttcaacgat ttccggcatc tgacgataga
     1981 agaaggtcaa cagcagcgta cgaatgtgcg agccgtcgac gtccgcatcg gtcatgatga
     2041 tgatgctgtg ataacgcagt ttgtccgggt tgtactcgtc acgaccgata ccacagccaa
     2101 gcgcggtgat aagcgtcgcc acttcctgag aagagagcat cttatcgaag cgcgctttct
     2161 caacgttgag gattttaccc ttcagcggca gaatcgcctg gttcttgcgg ttacgcccct
     2221 gcttcgcaga gccgcccgcg gagtcccctt ccaccaggta cagttcggaa agcgccggat
     2281 cgcgttcctg gcagtctgcc agtttgcccg gcaggcccgc taagtcgagc gcacctttac
     2341 ggcgggtcat ttcacgcgcg cgacgcgccg cttcacgggc acgggcagca tcgataattt
     2401 tgccaaccac gattttcgcg tcggttgggt tttccagcag gtattctgcc agcagttcgt
     2461 tcatctgctg ttcaaccgcc gatttcacct cagaagaaac cagtttgtct ttggtctggg
     2521 aggagaattt cgggtccggc acttttacgg aaacgaccgc aatcaggcct tcacgcgcat
     2581 cgtcaccggt ggcgctgact ttggcttttt tgctgtagcc ttctttgtcc atgtaggcgt
     2641 tcagggtacg ggtcatcgcc gcacggaagc ctgccaggtg agtaccgccg tcacgctgcg
     2701 gaatgttgtt ggtaaagcag tagatgtttt cctggaagcc atcgttccac tgcaacgcca
     2761 cttcgacgcc aataccgtct ttttcggtgg agaagtagaa gatattcgga tggatcggcg
     2821 ttttgttctt gttcagatat tcaacgaacg ccttgatgcc gccttcatag tggaagtggt
     2881 cttctttgcc gtcacgcttg tcgcgcagac gaatggaaac gccggagttg aggaacgaca
     2941 actcacgcag acgtttcgcc agaatttcat attcgaactc ggtcacattg gtgaaggttt
     3001 cgaggctggg ccagaaacgc accatggtgc cggttttttc agtctcgccg gtaaccgcca
     3061 gcggagcctg cggtacaccg tgttcgtaga tctgacggtg aattttaccc tcgcgctgga
     3121 taaccagctc cagtttttgc gacagggcgt ttactaccga aacaccaacg ccgtgcagac
     3181 cgccggacac tttataggag ttatcgtcaa atttaccgcc tgcgtgcaga acggtcatga
     3241 tcacttccgc cgccgatacg ccctcttccg ggtgaatacc ggtcggaatg ccgcgcccgt
     3301 catcctgtac agagacagag ttatcggcgt gaatggtgac gataatttct ttacagtgac
     3361 ccgcgagcgc ttcgtcgata gcgttatcta ccacctcgaa taccatgtgg tgcagaccgg
     3421 tgccgtcatc cgtgtcgccg atatacatac ccgggcgctt acgcaccgca tccagccctt
     3481 tcaggacttt gatactggag gagtcataag aattcgacat caacgtttct cgctcattta
     3541 tacttgggtt aatccgttat tttacccttt tccacggtaa acatcttcga attttcgtcc
     3601 gacatgtcta taacgtgttc agcactgatc gcgctgacaa agacctgtga ttgcgtcgct
     3661 tttaagcggc tggcaagcag cccgcgacgc tcatcatcaa gctcagaggc aaaatcatct
     3721 atcaggtaga gacaccgccg cccgctttca cgggtgagga actctccttg cgccagacgt
     3781 aaggcgcaca tcaacagctt aagctgccca cgcgataagg tatcttccac cggcgcaccg
     3841 tcggcgcgaa tgcgtaagtc cgctttatgc gggccatgcg cggtgtaggt tagctggcga
     3901 tcgcgttcaa aattacgttc cagcacctca gcatattctg tctctttctc ccagccgcgc
     3961 tggaaagaga aagtcagaga aaactcaggg agaaattgct tacaagtatc ggccatatca
     4021 gccgcgatac cggcgctata ctccgcgcgc caggtgctga tttgctccac cagcgggatc
     4081 agctctttat cccacgggcg tagctgttcg taacgtgtca cctggcgcag cgccgcattg
     4141 cgctgcttga gcaatcgctt gagattgctc caggcggtga aaaatccggg ttcgttgtga
     4201 aagcatgccc agtcgagaaa tgctcttctg tatttggggc cgccgttgag taaagtaaac
     4261 ccttctggcg ttatcagctg catcggcatc aggtgcgcca gctccgcgac tttatgcccg
     4321 tcagtaccgt cgatgcggac tttgctgtcg ccttgtttgt ctttggttaa gccaatcgcc
     4381 gtctcgcgct cttcgccctg taatcgccca tggagaacaa atgcctcctg ctcatggcga
     4441 atgacgcgac caatctgcaa actgcgaaac gcccgaccat ggccgagcgt atagatggct
     4501 tccagcacac tggttttgcc actgccgttg gcacctacca gaaagttaaa gccgggagat
     4561 aaggcgagat ccgcggtttc gatattgcgg aaatcgcgga tcaacaagcg ggtgagggac
     4621 attacagtct cattggcatg acaacataag ccgcgctctg gctggccgca tcttcaatct
     4681 gcacgctgga aaccgaatcg gtcagcatca tgcggacgtt ttcgcatttc agcgcgttca
     4741 gaacatccag cacatagctg acgttgaagc cgatttccat ctccgcaccg ctataggtaa
     4801 cgtcgaggat ctcttccgct tcttcctgtt ccgggttgtt ggcagtgatt ttcagctggt
     4861 tttcgctgac ataaagacgt acgccgcgga atttctcgtt agagagaatt gccgcacggg
     4921 caaacgcctg cttgagcaga tcgcagccag cttccagatg tttgtccggg ttcttcggta
     4981 gaacgcggcg gtaatccggg aagcgaccat ccaccagttt ggaggtgaag ataaagtcgc
     5041 caacgtgggc acgaatgtta ttgctgccaa tctgcacgcg cagcggattg tcgccgccgt
     5101 cgagcatacg catcagttca atcacgcctt tacgcggcac gatcaccgaa tggcttggca
     5161 aagattgacc aattggcatt gaacagactg ccagacggtg accatcggtc gctacggtgc
     5221 gcagttcttc gccttcggtt tcaaacagca taccgtttaa gtaatagcga acatcctgat
     5281 gcgccatcga aaactgggtc gcttcaatca gacgcttcat cgtcgcctgc ggcagggtaa
     5341 attcgacttc gctctgccag tcatcgaggt tcgggaaatc cgccgctggc agggtagaca
     5401 gcgaaaaacg gctacgcccg gagcgcacca gcatccgttc accttccagc tgcacggcaa
     5461 tttccgcgcc ttcaggcaga ccacggcaga tatcaaagaa tttgcgcgcc ggaacggtcg
     5521 ttgctcctgg ctcgtgtggc tgaaccagcg caacacgtgc caccatttcc atctcgagat
     5581 cagtaccggt cagcgacaac gtaccgtcag caacctgtaa cagcagatta ccgagaatcg
     5641 gtagcgtagg acgaccacct aacggaccgc tcacctgttg tagcggtttt aataaatgct
     5701 cacgttctac ggtaaatttc ataggtttac gatgacaatg ttctgattaa atttgaaaaa
     5761 tcttctttga tatcgtggct ctcttcacgc aactgctcga tcttacggca ggcatgaagc
     5821 accgtcgtgt ggtcacgacc accaaacgca tcgccaatct ccggcagact gtggttagtc
     5881 agctctttcg ccagcgccat cgccatctgg cgcggacgcg ccaccgagcg ggatcgacgc
     5941 ttggaaagga gatccgcgac tttgatcttg tagtactccg ccaccgtctt ctgaatattg
     6001 tcgatggtga ccagtttttc ctgcaatgcc agcaagtcgc gcagcgcctc acgcacgaag
     6061 tcgatggtga tcgcccgtcc ggtaaagttg gcattggcaa tgacgcggtt cagcgcccct
     6121 tccagctcac gtacgttaga tcgtagacgc ttggcgataa agaacgccac ttcgcccggc
     6181 aaacgaatgt cgttttcgtc ggcctttttc atcaggatcg ccacacgggt ttccagctct
     6241 ggcggttcga tcgccacagt cagtccccaa ccgaagcggg atttcaaacg atcctcaacg
     6301 ccgttgatct ctttcggata gcgatccgag gtgagaatga tctgttgatt accttccagc
     6361 agggcgttga aggtatggaa aaactcttcc tgagatcgtt ctttattagc aaaaaactga
     6421 atatcgtcga tcagcagtgc atctacggaa cggtagtagc gtttaaactc ttcgatcgcg
     6481 ttgttttgca gggctttaac catgtcctga acaaagcgct cggagtgcat ataaaccact
     6541 ttggcattcg gcttgcgcgc cataatgccg ttacccaccg catgcagcag gtgagtttta
     6601 cccagacccg tgccgccata aaggaacaac gggttatagg caccgccagg gttatccgcc
     6661 acctggcgag ccgccgcgcg cgccagttgg ttagatttac cttcaacgaa gttatcaaac
     6721 gtgtgtttga cgtttacgtt agaacgatag gtcggttctg ccggggccgg gacgttatcc
     6781 caacctgagc gcgtagaagg cgcagcacgt tgcggctgcg tttgcgccac ctgtgcaggg
     6841 gccgcgacgt tgctcgtcac tgccgcttgt ggcgtttgcg tcaccggttt ggtgccgact
     6901 tcaaaacgca gctgtggggc atccgctccg cagaaactgg ttagcagtcc attgatatta
     6961 ttaaggtact tgtcccgtac ccaatcgagg acaaaacggt ttggcgcgta cagggccagc
     7021 gtgttatcgc tcagttccgc ctgcaatggg cgtatccaca tactgaattc tgtggctggt
     7081 aactcatcct gcaatcgggc aagacactgc tgccaaagcg aaagtgacac ggcggactcc
     7141 actcgaacaa aagtcgataa tgactaaggc tgaaacattc atgattgttg acgtacgtcg
     7201 aaaagaccct gcttgagggt gacgcacgaa ccgctgtctg cggttatatg cccgatcaag
     7261 atcctgcaaa acgatcggga ccgcggatca tagcctaaac tgcgcaagag atcttctgtt
     7321 tctcacagat tttcccgatt tatccacagg actttccaga actcgctaag tgtaaacgat
     7381 cctgccgcga ggcgggcacg atttacgccg catattgaaa aatttaatga ccatagacaa
     7441 aaattggctt aatcgatcta ataaagatcc aggacgatcc ttgcgcttta cccatcagcc
     7501 cgtataatcc tccacccggc gcgccatgct ggtttccact ggtgtgaggt cgtacatttt
     7561 ccctgcgaaa aggtgcggaa aagcgcggta aataaggaaa gagaattgac tccggagtgt
     7621 acaattatta caatccggcc tctttaatca cccatggctt cggtgtccat cgtttcattt
     7681 ttcggcggat atccaataaa gccattgaat ttattcaagt ttaggtagaa atcgccatga
     7741 aacgcacttt tcaaccgtct gtactgaagc gcaaccgttc tcacggcttc cgtgctcgta
     7801 tggctactaa aaatggtcgt caggttctgg cacgtcgtcg tgctaaaggc cgcgctcgtc
     7861 tgaccgtttc taagtaataa agctaacccc tgagtggtta agctcgcatt tcccagggag
     7921 ttacgcttgt taactcccag tcaattcaca ttcgtcttcc agcagccaca acgggctggc
     7981 acgccgcaaa ttaccattct cggccgcctg aattcgctgg ggcatccccg tatcggtctt
     8041 acagtcgcca agaaaaacgt tcgacgcgcc catgaacgca atcggattaa acgtctgacg
     8101 cgtgaaagct tccgtctgcg ccaacatgaa ctcccggcta tggatttcgt ggtggtggcg
     8161 aaaaaagggg ttgccgacct cgataaccgt gctctctcgg aagcgttgga aaaattatgg
     8221 cgccgccact gtcgcctggc tcgcgggtcc tgatagccct cattcgggtc tatcaacgcc
     8281 tgattagtcc gctactcggg ccgcattgtc gtttcactcc aacctgttca agctacggaa
     8341 ttgaggcatt gcgcaggttt ggagtgataa aaggcagttg gttgacggtg aaacgcgtat
     8401 taaaatgcca ccctttacac cctggtggtg acgatcccgt cccgcccgga ccatttgata
     8461 ccagagaaca ctaacgatgg attcgcaacg caatctttta gtcatcgctt tgctgttcgt
     8521 gtctttcatg atctggcaag cctgggagca ggataaaaac ccgcaacctc aggcccaaca
     8581 gaccacgcag acaacgacca ccgcagcggg tagcgccgcc gaccagggcg taccggccag
     8641 tggccagggg aaactgatct cggttaagac cgacgtgctt gatctgacca tcaacacccg
     8701 tggtggtgat gttgagcaag ctctgctgcc tgcttacccg aaagagctga actctaccca
     8761 gccgttccag ctgctggaaa cttcaccgca gtttatttat caggcacaga gcggtctgac
     8821 cggtcgtgat ggcccggata acccggctaa cggcccgcgt ccgctgtata acgttgaaaa
     8881 agacgcttat gtgctggctg aaggtcaaaa cgaactgcag gtgccgatga cgtataccga
     8941 cgcggcaggc aacacgttta ccaaaacgtt tgtcctgaaa cgtggtgatt acgctgtcaa
     9001 cgtcaactac aacgtgcaga acgctggcga gaaaccgctg gaaatctcca cctttggtca
     9061 gttgaagcaa tccatcactc tgccaccgca tctcgatacc ggaagcagca acttcgcact
     9121 gcacaccttc cgcggcgcgg cgtactccac gcctgacgag aagtacgaga aatacaagtt
     9181 cgataccatt gccgataacg aaaacctgaa catctcttcg aaaggtggtt gggtggcaat
     9241 gctgcaacag tatttcgcga cggcgtggat cccgcataac gacggtacca acaacttcta
     9301 taccgctaat ctgggtaacg gcatcgccgc tatcggctat aaatctcagc cggtactggt
     9361 tcagcctggt cagactggcg cgatgaacag caccctgtgg gttggcccgg aaatccagga
     9421 caaaatggca gctgttgctc cgcacctgga tctgaccgtt gattacggtt ggttgtggtt
     9481 catctctcag ccgctgttca aactgctgaa atggatccat agctttgtgg gtaactgggg
     9541 cttctccatt atcatcatca cctttatcgt tcgtggcatc atgtacccgc tgaccaaaac
     9601 gcagtacacc tccatggcga agatgcgtat gctgcagccg aagattcagg caatgcgtga
     9661 gcgtctgggc gatgacaaac agcgtatcag ccaggaaatg atggcgctgt acaaagctga
     9721 gaaggttaac ccgctgggcg gctgcttccc gctgctgatc cagatgccaa tcttcctggc
     9781 gttgtactac atgctgatgg gttccgttga actgcgtcag gcaccgtttg cactgtggat
     9841 ccacgacctg tcggcacagg acccgtacta catcctgccg atcctgatgg gcgtaacgat
     9901 gttcttcatt cagaagatgt cgccgaccac agtgaccgac ccgatgcagc agaagatcat
     9961 gacctttatg ccggtcatct tcaccgtgtt cttcctgtgg ttcccgtcag gtctggtgct
    10021 gtactatatc gtcagcaacc tggtaaccat tattcagcag cagctgattt accgtggtct
    10081 ggaaaaacgt ggcctgcata gccgcgagaa gaaaaaatcc tgattcggtg agttttcgct
    10141 aaaataaggg cggtcagttg accgcctttt ttcttttcgt agggcggata agcaccgcgc
    10201 atccgccaca caaagcaaca ggaacatcat gagcgataat gacactatcg tagcccaggc
    10261 cacgcctccg ggacgtggcg gcgttggcat cctgcgcatc tccggcttca aagcccgtga
    10321 agttgccgaa accgtgctgg gtaaactgcc taagccgcgc tacgccgatt atcttccgtt
    10381 taaagacgcc gacggcagcg tgctcgatca ggggattgcg ctatggttcc ctggcccgaa
    10441 ctcgttcacc ggcgaagatg tgctggaact gcaaggtcat ggcggtccgg tgatcctcga
    10501 cctgctgtta aaacgcattc tgaccattcc cggcctgcgg attgctcgcc ctggtgagtt
    10561 ttccgaacgc gcgtttctta acgataaact tgacttagcc caggccgagg cgattgccga
    10621 tcttatcgac gccagttcgg aacaggcggc ccgttcggca cttaactcgc tgcaaggcgc
    10681 attctccgca cgggttaatc atctggtaga agccctcacc cacttgcgca tttacgtcga
    10741 agcggcaatt gatttccccg atgaagagat cgatttcctc tccgacggaa aaattgaagc
    10801 ccagctcaat gacgttattg ccgatcttga tgcagtgcgt gctgaagcac gtcagggtag
    10861 tttgttgcgc gaagggatga aagtggtgat tgccggacgt cctaacgccg gtaaatcgag
    10921 cctgttaaac gcgctggcgg ggcgtgaagc ggcaatcgta accgatatcg ccggaactac
    10981 gcgtgacgtg ctgcgtgagc atatccacat tgacggaatg ccgctgcata tcatcgatac
    11041 cgccgggcta cgtgaagcca gtgacgaagt agaacgtatt ggtatcgagc gcgcgtggca
    11101 ggaaattgaa caggccgacc gcgtgctgtt tatggtcgat ggcaccacaa cagacgccgt
    11161 ggatccggca gagatctggc cggaatttat tgcccgtctg ccagcgaaac tgccgatcac
    11221 cgtggtgcgc aataaagccg atatcaccgg cgaaacgctg ggaatgagtg aagtgaacgg
    11281 tcacgcgtta attcgtctct cggcaaggac tggtgaaggc gtggacgtgc tgcgtaacca
    11341 tctcaaacag agcatgggct ttgacaccaa catggaaggc ggcttcctgg cgcgtcgtcg
    11401 ccacctacag gcgctggaac aggcagcgga acatctacaa cagggcaaag cgcaactgtt
    11461 gggagcctgg gcaggtgaac tgctggcgga agagttgcgt ctggcacagc agaacttaag
    11521 cgaaatcacc ggggaattta cttcagacga cctgctgggg cggattttct ccagcttctg
    11581 tattggtaag taaccgcgct tacgaagccg tattctgact gtcagatgcg gcttcgcttc
    11641 attgttagca ctcctgttat tcctcaaccc tttttttaaa cattaaaatt cttacgtaat
    11701 ttataatctt aaaaaaagca tttaatattg ctccccgaac gattgtgatt cgattcacat
    11761 ttaaacaatt ttagaataga caaaattctt gagtattata ctgtagcctc gtgtctttcg
    11821 aggaataagt gcattatgaa tatcttacat atatgtgtga cctcaaaatg gttcaatatc
    11881 gacaa
//
LOCUS       DAJVUP010000132        11820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.132, whole genome shotgun sequence.
ACCESSION   DAJVUP010000132 DAJVUP010000000
VERSION     DAJVUP010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.132"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..124)
                     /locus_tag="OQQ75_003194"
     CDS             complement(<1..124)
                     /locus_tag="OQQ75_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310472.1"
                     /note="osmotically-inducible lipoprotein E; activator of
                     ntr-like gene protein; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1977427.1"
                     /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKK"
     gene            326..1153
                     /gene="nadE"
                     /locus_tag="OQQ75_003195"
     CDS             326..1153
                     /gene="nadE"
                     /locus_tag="OQQ75_003195"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HCS1977428.1"
                     /translation="MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV
                     LGISGGQDSTLAGKLCQMAINELRQETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ
                     PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGT
                     DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDR
                     PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK"
     gene            1383..2270
                     /gene="cho"
                     /locus_tag="OQQ75_003196"
     CDS             1383..2270
                     /gene="cho"
                     /locus_tag="OQQ75_003196"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease Cho"
                     /protein_id="HCS1977429.1"
                     /translation="MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGES
                     DTMLLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ
                     QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIA
                     DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW
                     PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGYKILCKPL
                     LSGNYEITELDPANDQRAS"
     gene            complement(2230..2805)
                     /gene="ves"
                     /locus_tag="OQQ75_003197"
     CDS             complement(2230..2805)
                     /gene="ves"
                     /locus_tag="OQQ75_003197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="environmental stress-induced protein Ves"
                     /protein_id="HCS1977430.1"
                     /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA
                     ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPLQPFAFAADQVVKAKLTEGQM
                     SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFD
                     GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ"
     gene            complement(3008..3478)
                     /gene="spy"
                     /locus_tag="OQQ75_003198"
     CDS             complement(3008..3478)
                     /gene="spy"
                     /locus_tag="OQQ75_003198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-independent periplasmic protein-refolding
                     chaperone"
                     /protein_id="HCS1977431.1"
                     /translation="MRKLTALFVASTLALGAANLAHAAAPADAKPMMHHKGKFGPHQD
                     MMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIVSDTFDKAKAEAQIAK
                     MEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE"
     gene            complement(3808..4776)
                     /gene="astE"
                     /locus_tag="OQQ75_003199"
     CDS             complement(3808..4776)
                     /gene="astE"
                     /locus_tag="OQQ75_003199"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HCS1977432.1"
                     /translation="MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQG
                     ALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDM
                     NRMFGGRWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGV
                     LPQRDIPWDEKFLTWLGAAGLEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFG
                     QNDLRQFAVTASAIAALLSGESVGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFM
                     PFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS"
     gene            complement(4769..6112)
                     /gene="astB"
                     /locus_tag="OQQ75_003200"
     CDS             complement(4769..6112)
                     /gene="astB"
                     /locus_tag="OQQ75_003200"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HCS1977433.1"
                     /translation="MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQ
                     GLLKMKTLADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSS
                     ASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFS
                     VHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREAS
                     EAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLAN
                     LRARVNGFMAIEVPATQVSVSDAVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGY
                     LNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFN
                     ALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGGGNG"
     gene            complement(6109..7587)
                     /gene="astD"
                     /locus_tag="OQQ75_003201"
     CDS             complement(6109..7587)
                     /gene="astD"
                     /locus_tag="OQQ75_003201"
                     /EC_number="1.2.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
                     /protein_id="HCS1977434.1"
                     /translation="MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACR
                     AARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKLRWEAATEVTAMI
                     NKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL
                     AGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLF
                     TGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQR
                     CTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAW
                     QQLEAMGGRTLLAPRLLQLETSLLTPGIIEMTGVAGVPDEEVFGPLLRVWRYDSFEEA
                     ILMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGN
                     HRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR"
     gene            complement(7584..8618)
                     /gene="astA"
                     /locus_tag="OQQ75_003202"
     CDS             complement(7584..8618)
                     /gene="astA"
                     /locus_tag="OQQ75_003202"
                     /EC_number="2.3.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HCS1977435.1"
                     /translation="MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAI
                     KTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWHNYRVGTLVHASKELN
                     VYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV
                     AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS
                     QEAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVE
                     VAEGQPAQGDFPACLVANENYHHFRVVLARTDPATERLILTAAQLDALKCHAGDRVRL
                     VRLCAVEKTA"
     gene            complement(8615..9835)
                     /gene="astC"
                     /locus_tag="OQQ75_003203"
     CDS             complement(8615..9835)
                     /gene="astC"
                     /locus_tag="OQQ75_003203"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylornithine/acetylornithine transaminase"
                     /protein_id="HCS1977436.1"
                     /translation="MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDF
                     AGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFC
                     NSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAP
                     LPPDIRHAAYNDINSASALIDDATCAVIVEPIQGEGGVVPASNAFLQGLRELCDRHNA
                     LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGDFPVGALLTTEECASVMTVG
                     THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRG
                     LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR
                     FAAACEHFVSRGSS"
     gene            10281..11087
                     /gene="xthA"
                     /locus_tag="OQQ75_003204"
     CDS             10281..11087
                     /gene="xthA"
                     /locus_tag="OQQ75_003204"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HCS1977437.1"
                     /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL
                     EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN
                     VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
                     IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK
                     GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR"
     gene            11254..>11820
                     /locus_tag="OQQ75_003205"
     CDS             11254..>11820
                     /locus_tag="OQQ75_003205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1977438.1"
                     /translation="MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSG
                     LFGYSLYILLFIIATLFLLLGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARW
                     LGRDLLLKYVGHSHTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWP
                     YTLISALTTLPGIVIYTVMASDLANEGIT"
BASE COUNT         2851 a         3214 c         2926 g         2829 t
ORIGIN      
        1 cttttttgac gtctttcacc acaggctgta caaactggtc tttggtacga tcataagccg
       61 tacaacccgc cagcatggtt aataccgccg ctgcactcag aattcctgcc atattcttgt
      121 tcatattccg tcctcttgtt tatcagcgtg ttagataagc ctggaataca ttgggcgctt
      181 tttcaagccc gtgaacgaaa cggctccgct ttcagaggat tcctgtatga cgttttatcc
      241 accattcaac ccgctgtcgc ttgtcgtttc agtagcgacg ggttagcttt aaggaagttt
      301 tgtcttttct gtctggaggg gttcaatgac attgcaacaa caaataataa aggcgctggg
      361 cgcaaaaccg cagattaatg ctgaagagga aattcgtcgt agtgtcgatt ttctgaaaag
      421 ctacctgcaa acttatccgt tcattaaatc actggtgctc gggatcagcg gcggtcagga
      481 ctccacgctt gccggtaagc tgtgccagat ggcgattaat gagctgcgcc aggagaccgg
      541 caacgaatca ctgcaattta ttgccgtacg cctgccctat ggtgttcagg ccgacgaaca
      601 agattgccag gatgccattg cctttattca accggatcgc gtattaaccg ttaatatcaa
      661 gggcgcggta ttggccagcg aacaggcgct gcgcgaagcg ggcattgaac tgagcgattt
      721 tgtccgtggc aatgaaaaag cgcgtgagcg gatgaaagca caatatagca ttgcgggtat
      781 gaccagcggt gtcgtggtgg gcaccgatca tgcagcagaa gctattaccg gattcttcac
      841 taaatatggt gacggcggta cggacattaa tccgctgtat cgtctcaaca aacgtcaggg
      901 taaacagtta ctggcggcat tagcttgccc ggaacacctt tataagaaag cgccaacggc
      961 cgatctggaa gatgatcgcc cttctctgcc agatgaagtg gcactcggcg tgacctatga
     1021 caatatcgac gactatctgg aagggaaaaa cgtacctcaa caggtcgcca gaacaataga
     1081 gaactggtat ctgaaaaccg aacataaacg ccgtccgcca attaccgttt tcgatgattt
     1141 ctggaaaaag taataatttg cacatattgg attgtgcgaa aaagagtaat ttgttcacgc
     1201 cggatgcggc gtgaacgcct tattcgacct ataaaactat gcaaattcaa tacattgcag
     1261 gagtcgaata ggcctgacag gcgtagcacg tcagacggtg taacctttgt catcgacccg
     1321 cctctttttt aatcgcttcc cgcctgttac actggataga taaccagcat tcggagtcaa
     1381 cagtggtacg gcgtttaact tctccgcggc tcgaatttga agctgcggca atttatgaat
     1441 atcccgaaca tttacgttca ttccttaatg acttacccac ccgaccaggg gtgtatctgt
     1501 ttcatggtga aagtgacacc atgctgctct atatcggcaa aagcgttaac atccgcagcc
     1561 gcgtcctttc tcatttacgt accccggatg aagccgccat gctacggcaa tcccgacgga
     1621 tcagctggat atgtaccgcc ggtgaaatcg gcgctctgct ccttgaagcg cgattaatca
     1681 aagaacaaca gccgctgttt aataaacggt tgcgccgcaa tcgtcagctc tgtgccctgc
     1741 aattaaatga aaagcgcgtc gatgtggtgt atgccaaaga ggtggatttt tcacgagccc
     1801 ccaacctgtt tggcctgttt gccaataggc gcgcagcttt gcaagcattg cagaccatcg
     1861 ctgatgaaca aaaactttgt tatggcctgc tgggactgga accgttaagt cgcggtcgtg
     1921 catgttttcg ttcagcgcta aaacgttgcg ccggagcatg ctgcggtaaa gagagccatg
     1981 aggaacatgc gctacgcttg cgccagtctc tggagcgttt gcgggtggtg tgttggcctt
     2041 ggcaaggggc ggtggcgctg aaagaacagc acccggaaat gactcaatat catattattc
     2101 aaaactggct gtggctgggg gcggttaatt cgctggaaga cgcgacaacg ttaattcgga
     2161 cacccgccgg gtttgatcac gacggttata aaattctttg taagccgctg ctttccggta
     2221 actatgaaat tactgaactt gatccggcga atgaccagcg agccagttga tttcactgaa
     2281 caacagttta ccttgcggtt gtaaaagccg cagggtgtgc ctgccatcga accagcacgc
     2341 gccctggtcg gtagtgagca atttatcgcc cagttgccac gccccgttaa tcacaaacac
     2401 caccccgccg cgtgagccaa aggtagtaaa cgtacgttcg gcaattctga ctttcgcctt
     2461 acagacatcc aggcgtgtca tgatgttgaa atccatcgac atctgccctt ccgtcagttt
     2521 cgcttttacc acctggtccg ctgcaaaggc aaaaggctgt aacggtttta aggtatggtt
     2581 aaagcggtct gcgctttcaa ggagcatctc gccgccttcc agcaacgtca ctatcctttc
     2641 catgccggga aacaaagaaa actccccatt cgccgcgatg gatgcaatgc tggcacgcca
     2701 gtaaaaatca cgttttgccg gtgggaaagt gcaaatttcg cgcgtttcac cggcagcatt
     2761 tcgccacaga ttcaccgaca ttttacgcat atcaaagtat tccatactcg ctcccggccc
     2821 gttcttttca ttgttatcgt tcaggtaacc gtggatggtt atcggcaact cgggtgattt
     2881 acgttagtgg tgatcaggct ttttttacaa ctgtttgaga agagaaaaga aaaccgccga
     2941 tcctgtccac cgcattactg caaggtagtg gacaagaccg gcggtcttaa gttttttggc
     3001 tgaaagatta ttcagcagtt gcaggcattt taccttttgc cgctggacgt tctgtcagac
     3061 gcttctcaaa attagcatta aattgctttt tctgttccgg cgtcaggatg ttgtaaattt
     3121 tgttctgggt ttccatgtgc gccagcatgt tagctttgcg ctgttcttcc atttttgcga
     3181 tctgcgcttc agcttttgct ttatcgaagg tatcgctgac aatgatgtca tgcattgcgc
     3241 ggcgttcttc cagcggcgga cgtttcatct ggtcacgctg gcctttcatg atttcgcgga
     3301 tctgctgttt ctgcgcgtcg gtcaggttca ggtctttgaa catcatgtcc tgatgcggac
     3361 cgaacttgcc tttgtggtgc atcatcggct tcgcgtcagc cggtgctgcg gcatgggcca
     3421 ggttagccgc gccaagagcc agggtagagg caacaaacag tgcagttaat ttacgcatat
     3481 tctatatcct tcctttcagt tatttattac ggctttctta agtagcgtgc cgtgttgaca
     3541 agattaactt tactgacttt agcgtcaatt aatcagagca acggtaaaac aatgaaagtg
     3601 taaaaaacac ttttgcgcca attatggaga aaaaaagaaa atttgatgga gagtgatgag
     3661 agaatattac aacacaatga ttttgcagag attatgaaga actatactgg atgactggtg
     3721 ataaataaag caaataacca ggattaatct gtattaattt ataagaaagc aacttaatac
     3781 ccgcagaatg atttctgcgg gtaagtatta gcttattttt tcgagcatta atcccgcgcg
     3841 taatcccaac gctaccaacg gattagggaa taacacatac tctacatcat gggttacggt
     3901 aaaacgttcc tctccgtcct gcgccagcaa tgttcctttc tcaaacggca taaaattcag
     3961 cgtgtcactt gccatatgca tttcgaagga cggcgagtgg cgagtaattt gcgaaaccac
     4021 ccgataacgg agcggcggtg ttctcacgat accgacactc tcaccagata gcagcgcagc
     4081 aattgcgctg gcagttactg caaactggcg aagatcgttt tgcccaaagg gcaacgcttt
     4141 gccaagttcc agcgtacagg ccagcgcgcc aaaatgtctg gcgctgaaat gggtaaacgt
     4201 accaccaggt tcctgatgga acaccagcgc ctccagcccc gccgcaccca gccacgtcag
     4261 aaatttctcg tcccagggaa tgtcgcgttg cggtaataca ccgaactgcg gatgcaagga
     4321 gccacgaatt gcggtatgta gatcaaggtg ccagcgcaca gattctttgc cctggtcata
     4381 aaaatcttcc aggcactgtt ccagttcgcg cgcccgacag gtttctccgc tttcagcaaa
     4441 tagctgccaa cgaccgccaa acattcgatt catatcgcta tggcaataac gtttcccttg
     4501 cttcagcgca ggaggattcc cgaggatcac cagcaaccgc caacgtaacg ggatctcgcc
     4561 gtgagatatc gcgccaagca acgcgtccag catttccaca ggtgccgtct cattaccgtg
     4621 gatccccgca gaaatcacca gcgcgccttg cggtggcgtt aatggcgtca gttccagcac
     4681 accatcgccc agccagcgcc agcgaacgcc gttgatttct cgctcggtga taaccggttt
     4741 tttacccgtt aaggtcagag caagaaaatt atccattgcc ccctccctcg cgctggaacg
     4801 gataaaccga accgagattc agtaattggc tcaatacatc cagtgcttcc cgcccttcgc
     4861 gcagcaattg cgggtcggcc agatcggcag cagtaagacg atcgcggtag taacgatcca
     4921 cccagtcatt gagcgcatta aacaaggtat cgttcatcat caccgccgga ttcaccgccc
     4981 ggcgttcttc ttctgtcaat accacccgca accgcaggca cgccgggccg ccgccattcg
     5041 ccatgctttc acgtaagtca aagactttta gttcgctaat cgggttgtca gcggcaagga
     5101 gttcattgag ataaccccat actccggcgt gttcccgaca ctcctgaggc agcaccaaca
     5161 tcatggaacc atcatcgcgg ctcaacagtt ggctgttaaa cagataggta gacaccgcat
     5221 ccgacacgga aacctgagtt gccggaactt ctatcgccat aaaaccgttc acccgcgccc
     5281 gcaggtttgc cagtaactgt gactggcgag cgaacgcctg ttggtggcaa aacagcacct
     5341 ggcggttact tacggcaatc acgtcattat gaaaaacacc ctggtcgata acgtccgggt
     5401 tttgctgggc gaaaatcacc tgttggggat tcacctgatt aagccttgcc accgcctcgc
     5461 tggcttcgcg agtctgtcgc gccggataac gggaaggccg ggtatcattg ccttcttctc
     5521 gcccgtagac aaaaagttgc atacccggct caccgtaatg accgccgaga cgattgtggt
     5581 ttgccgcccc ctcatcaccg agcaacgcta cctgcggcaa cgccgaatgg acgctaaatt
     5641 tctcttcgtc gttaaaaata gcttttaaca gcgattcagt gacgggcgct tccagcgaac
     5701 ggtgaaattt attgttcagg ttggcaacgg tgagatgcac tttgccatcc agcgtatcgg
     5761 cagatggcgc gatcgttgcc gcattggcta cccacattgg cgaagcggag ctgacgctgg
     5821 aaagccagtg cggtgcctgg cgtgcaactt tttccagtac ctgctcatcg ctaccactga
     5881 atcccaactg acgcagcacc ggaataaacg gacgctcgtg cggcgggatc acggcctggg
     5941 ggaatcctgc atcggcaagg gttttcattt tcagtaagcc ctgtttcgcc gccagtcgcg
     6001 ggttagacac ctgaaaacgg tgacgggtag aggcttcatt accaaacgac aggccagcgt
     6061 aatgatgcgt cagccctacc agcccgtcga aattaacttc ccaggcgttc atcgcaccac
     6121 ctcatcggaa aaatccagcc cggggttaag cgttgcgggc aaagttaacg agtccgactc
     6181 caggctcgcc ataggccatg cgcagtaatc tgcggcatac caggcgctgg ggcgatggtt
     6241 accggatgca ccaatgccgc cgaatggcgc ggtactggca gcaccagtaa gcggtttgtt
     6301 ccagttaaca atccccgccc gcgcctccag caacagttga tcgaattttt cccgttcggg
     6361 ggaaaccaga ccgcaagaga gtccgaagcg agtgttattc gccattagaa tcgcttcctc
     6421 gaaagaatca taacgccaga cgcgcaataa cggtccgaac acctcttcat ctggtacgcc
     6481 agcaacgcct gtcatttcaa tgatccccgg cgtcagcaac gatgtctcta attgtaataa
     6541 gcgcggcgca agcagggttc gtccgcccat cgcttccagt tgctgccagg cagtaaccac
     6601 ctgctgtgcg gcctgttcag aaatcagccc gccaataaac ggctgcggtt cgtcatccca
     6661 gttgcccggc gttaatcgct ggctgacggc aaccagacga gcaagaaacg catcgccctg
     6721 cgctccgctt ttgagcaata aacggcgggc gcaggtgcag cgttgcccgg ctgtgacaaa
     6781 cgccgactga atggtcagat ggacagccgc gtcgatatcc gccacctcat cgataattag
     6841 cggattatta ccgcccatct caagggcgag aattttctcc ggctgaccgg agagctggcg
     6901 atgcagctgg tagccggtat tggcgcgacc ggtaaacagc aaaccgtcga gatcctccag
     6961 cgcactcagc gcctgacccg tttcacgccc gccctgcacc aggttcagca cgcccggcgg
     7021 caagccagcc tgctgccata aacgcattac cgcttcgcca ctccacggtg tcagttcgct
     7081 gggtttaaag ataatggtgt tacctgccag caatgccgga acgatatgtc cgttcggcaa
     7141 atgaccaggg aaattatacg gcccaaacac cgccagcacg ccgtgcgggc gatgtcgcag
     7201 gctcgccgca ccgtccggca tttcactacg ctgctcgccg gtacgaacgt gatacgcctt
     7261 aattgatatc gcgattttat tgatcatcgc cgtcacttcg gttgccgctt cccagcgcag
     7321 cttacccgtt tctctggcaa taatcgcggt taattcggct ttattgcttt ccagcaatcc
     7381 ggcaaagcgt tcgacaacga cctgacgttc agccaatgag agccgcgccc agcgcggaaa
     7441 cgccgcacgg gctgcccgac aagcctgttc gacctgagcg gcatcggcat cattgccttg
     7501 ccataacacc tcgcccgata ccggattacg cttcacacgc gatgcgccct ggcccgttat
     7561 ccagtcaccg ttaatccata aagtcatgct gttttctcca ctgcgcacag gcgcaccaga
     7621 cgaacgcgat cccctgcgtg gcatttgagg gcatccagtt gtgcggcggt taaaatcaaa
     7681 cgctcggttg ccggatcggt acgcgccagc accacgcgga aatggtgata attttcattg
     7741 gcgaccaggc aggccggaaa atcgccctgc gcaggctgcc cttctgccac ttccaccagc
     7801 cgacttttac ggatggcgcg cacgcggtcg atgtcacact caagcgttgg cccgccgtcg
     7861 aagatgtcga tatagttgcg gtaacgaaaa ccttctttct ccagcaccgc gcgggcaggc
     7921 gcggtttgcg gatgtacctg accgatgacg tcctgggctt cctgggataa aaagtgggta
     7981 tagatcggat gtttcggcat cagttctgca ataaatgcct tttgcccggt gccgcagaga
     8041 aaatcggcgc ggctaaaatc catcgaaaag aagcgtttac cgaggctttg ccagaacggt
     8101 gaatagccgt gttcgtcaat caccccgcgc atttcagcaa ccactttgtc attaaacttg
     8161 tcgcgaaaag ccgccataaa cataaagcgc gatttcgaca gcaaatagcc gttgccctct
     8221 ttgcgccagt ccgggtcgag aaacagcgtg cacagctcgc tgctgccggt gtgatcgtta
     8281 ctaagaaaca gcgtcggcaa tgcgttatag acattcagct cttttgaggc gtgaaccaac
     8341 gtgccgaccc gatagttgtg ccagggatcg ttcagcccaa ccgccacctc aatggcgcaa
     8401 atccccgcca cggtgcctgt ctcgctatct tccagcacga acacatagcc ctgctcgctt
     8461 ttgggcagtt cgccttgcca ggttttgatt gccctttcga tacgcgcgga aagcgtggct
     8521 tcattagcgg gaagcgacgt caggccgccg cccgttttgc tggcaagctg catcagcgcc
     8581 gagacatctg agcgctcaac gggacggatg accatcatga tgaacctcgg ctaacaaaat
     8641 gttcgcaagc agctgcaaag cgatccagtc cggtcgtcac ctcttcttcg ctgacattga
     8701 gcgcaggcgc aaaacgcacc acgttgccac ccgcaatcag taccataacg cctgctttcg
     8761 ccgcctcctg agagatctgt ttcgcttgtc cggcgtaatc ggcattcagt acacagccaa
     8821 tcaacaaacc taagccgcga acttcactga acaaaccgta gcggtgatta atggtattaa
     8881 gacgctcaac aaaccagtcg tgacgctgtt taacgccatt aagcatctct ggtgtgttga
     8941 tgagctccag cactttgccc gccaccgccg aggccagcgg attgccgcca taggtggtgc
     9001 catgagtgcc aacggtcatc acgctggcgc actcttcggt tgttaacaac gcaccgaccg
     9061 ggaaatcgcc gcccagcgct ttggcggtag ttaacagatc aggtgtcacg ccgtagtgca
     9121 tataggcata cagttccccg gtgcgcccga cgccggtttg tacttcatca aaaatcaaca
     9181 gcgcattgtg gcggtcacac aattcacgca gaccttgtaa aaacgcgttg ctggctggca
     9241 ccacaccgcc ttccccctgg atgggttcga caatcaccgc acaggtggcg tcgtcaatca
     9301 gcgcgctggc agagttaata tcgttatatg cagcatgacg gatatctggt ggcagtggcg
     9361 caaaatcctg tgaataggct ggctgcccac ccgcactgac agtaaacagc gtgcgaccat
     9421 gaaacgcatt tttaaacgcc atgataccgc tcttatggct gccgtagcgg tcgtgagcga
     9481 atttacgcgc cagttttagc gccgcttcgt tggcttccgc accggagtta caaaagaaga
     9541 cgcgatcggc aaacgtggcg tcgatcaatt ttttcgccag tcgcagtacc ggctcgttgg
     9601 tgtaaccgtt gccggtatgc cagaacttac tcgcctgttc gttcagcgct tcacgcagtt
     9661 ccggatgcgc atggcccagc gcgttcaccg caatgccacc cgcgaagtcg atatactctt
     9721 tcccctgctg atcccacaag cgcgaacctt cgccacgtac cggtataaag ggtgccggag
     9781 cgtaaacagg tatcatccat tcatcaaagt tttcacgcgt aattggctga gacatagcga
     9841 cctctacagt aaataattcg ttatttatat gttaacaata agtaatgttt gcgctgtaaa
     9901 tgtagattgc agggttcgtg ccagccagtg ataaaagtgc ataaacggcg gaggctaact
     9961 ggaaatcaag gagttataac caaaccatat gcatttaaag tgcatataaa gtgaatacgt
    10021 ttgcgatgtg ggtgaataaa aagaataaaa aacgcaatgt tatgcagaag taaaatataa
    10081 ttctggaatt gtgatcattg acgaaattta ctggaaatta ctgcgccatt ctgacgcagc
    10141 gcgcaccaaa agcgggcatt ttttgcgcca tcgttgacat cattaacaac catcgatcaa
    10201 atcacttaac aacaggcggt aagcaacgcg aaattctgct accatccacg cactctttat
    10261 ctgaataaat ggcagcgact atgaaatttg tctcttttaa tatcaacggc ctgcgcgcca
    10321 gacctcacca gcttgaagcc atcgtcgaaa agcaccaacc ggatgtgatt ggcctgcagg
    10381 agacaaaagt tcatgacgat atgtttccgc tcgaagaggt ggcgaagctc ggctacaacg
    10441 tgttttatca cgggcagaaa ggccattatg gcgtggcgct gctgaccaaa gagacgccga
    10501 ttgccgtgcg tcgcggcttt cccggtgacg acgaagaggc gcagcggcgg attattatgg
    10561 cggaaatccc ctcactgctg ggtaatgtca ccgtgatcaa cggttacttc ccgcagggtg
    10621 aaagccgcga ccatccgata aaattcccgg caaaagcgca gttttatcag aatctgcaaa
    10681 actacctgga aaccgaactc aaacgtgata atccggtact gattatgggc gatatgaata
    10741 tcagccctac agatctggat atcggcattg gcgaagaaaa ccgtaagcgc tggctgcgta
    10801 ccggtaaatg ctcttttctg ccggaagagc gcgaatggat ggacaggctg atgagctggg
    10861 ggttggtcga taccttccgc catgctaatc cgcaaacagc agatcgtttc tcatggtttg
    10921 attaccgctc aaaaggtttt gacgataacc gtggtctgcg catcgacctg ctgctcgcca
    10981 gccaaccgct ggcagaatgt tgcgtagaaa ccggcatcga ctatgaaatt cgcagcatgg
    11041 aaaaaccgtc cgatcacgcc cccgtctggg cgaccttccg ccgctaattt agcagctctc
    11101 ctggctcaaa ctgggtcagg agaattaacc ttgagaaaaa tcaacaaact gtcagtaatg
    11161 atttgttgcc tgccgtcctt tgttataccg tcactgcgtt tttagttgtc tgaccacttc
    11221 tctattatca agtttgatat aggaaactcc acgatgaatg ctgagcgtaa atttcttttc
    11281 gcctgtctta tttttgcgct ggtcatttac gctatccacg ctttcggttt attcgatctg
    11341 ctcaccgatt taccccactt acagacactc attcgccaga gcggattgtt cggttatagc
    11401 ctctatattc tgttattcat cattgccacc ctctttctgt tactaggaag catactggtg
    11461 atcgctggag gaatagtttt tggcccgctc ttagggacac tactctcatt aattgccgcc
    11521 acgctggcct cctcgtgctc attcctgctg gcgcggtggc tgggacgtga tttactgctg
    11581 aaatacgtgg gccatagcca taccttccag gccattgaaa aaggcattgc gcgtaacggt
    11641 attgattttc ttattctgac ccgcttaatc ccgttgtttc cttacaatat tcaaaattac
    11701 gcttacggat taaccaccat cgccttctgg ccttataccc ttatttcggc actcacgacc
    11761 ctgcccggta ttgttattta taccgtgatg gcaagcgatc tcgccaatga aggcattacg
//
LOCUS       DAJVUP010000133        11777 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.133, whole genome shotgun sequence.
ACCESSION   DAJVUP010000133 DAJVUP010000000
VERSION     DAJVUP010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11777
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.133"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(12..662)
                     /gene="hxpA"
                     /locus_tag="OQQ75_003206"
     CDS             complement(12..662)
                     /gene="hxpA"
                     /locus_tag="OQQ75_003206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpA"
                     /protein_id="HCS1977439.1"
                     /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH
                     GKQAITSLRHFMAGKSEADIAAEFTCLEHIEATETEGITALPGAIALLNHLNKAGIPW
                     AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV
                     AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ"
     gene            complement(673..1167)
                     /locus_tag="OQQ75_003207"
     CDS             complement(673..1167)
                     /locus_tag="OQQ75_003207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbU family protein"
                     /protein_id="HCS1977440.1"
                     /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM
                     RELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEAR
                     YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACLRQYHLSANEINQ
                     IINA"
     gene            complement(1251..1706)
                     /locus_tag="OQQ75_003208"
     CDS             complement(1251..1706)
                     /locus_tag="OQQ75_003208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HCS1977441.1"
                     /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT
                     RYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI
                     LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL"
     gene            2044..3246
                     /gene="ackA"
                     /locus_tag="OQQ75_003209"
     CDS             2044..3246
                     /gene="ackA"
                     /locus_tag="OQQ75_003209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HCS1977442.1"
                     /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI
                     KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS
                     VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE
                     SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS
                     AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL
                     LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGI
                     GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA
                     QDASRLTA"
     gene            3321..5465
                     /gene="pta"
                     /locus_tag="OQQ75_003210"
     CDS             3321..5465
                     /gene="pta"
                     /locus_tag="OQQ75_003210"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1977443.1"
                     /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR
                     TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA
                     EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG
                     GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL
                     GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL
                     LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT
                     NTWQTSLSLQSFNQEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF
                     RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV
                     ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG
                     LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL
                     AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP
                     LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG
                     MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ"
     gene            5655..7175
                     /gene="yfcC"
                     /locus_tag="OQQ75_003211"
     CDS             5655..7175
                     /gene="yfcC"
                     /locus_tag="OQQ75_003211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative basic amino acid antiporter YfcC"
                     /protein_id="HCS1977444.1"
                     /translation="MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQ
                     EVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTS
                     GSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSL
                     GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ
                     GIAGVPVLSGSGLRIVVWVIATMIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQAD
                     VEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRL
                     NGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAI
                     SGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQITVLAFQFG
                     DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH"
     gene            complement(7208..7750)
                     /gene="yfcD"
                     /locus_tag="OQQ75_003212"
     CDS             complement(7208..7750)
                     /gene="yfcD"
                     /locus_tag="OQQ75_003212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase YfcD"
                     /protein_id="HCS1977445.1"
                     /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV
                     HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE
                     HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
                     LALWMKRNAKNEAVETETAE"
     gene            complement(7808..8359)
                     /gene="yfcE"
                     /locus_tag="OQQ75_003213"
     CDS             complement(7808..8359)
                     /gene="yfcE"
                     /locus_tag="OQQ75_003213"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311211.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HCS1977446.1"
                     /translation="MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRN
                     ALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFL
                     THGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGML
                     DNDVLSVIALNDQSIIAQVAINP"
     gene            complement(8415..9047)
                     /gene="yfcF"
                     /locus_tag="OQQ75_003214"
     CDS             complement(8415..9047)
                     /gene="yfcF"
                     /locus_tag="OQQ75_003214"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase"
                     /protein_id="HCS1977447.1"
                     /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE
                     HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA
                     RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASVAMAEHLLALGQPNLFGEW
                     CIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG"
     gene            9183..9830
                     /gene="yfcG"
                     /locus_tag="OQQ75_003215"
     CDS             9183..9830
                     /gene="yfcG"
                     /locus_tag="OQQ75_003215"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GSH-dependent disulfide bond oxidoreductase"
                     /protein_id="HCS1977448.1"
                     /translation="MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL
                     RISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLF
                     WQVGELGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS
                     IADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS"
     gene            9887..10249
                     /gene="folX"
                     /locus_tag="OQQ75_003216"
     CDS             9887..10249
                     /gene="folX"
                     /locus_tag="OQQ75_003216"
                     /EC_number="5.1.99.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate 2'-epimerase"
                     /protein_id="HCS1977449.1"
                     /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK
                     ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK
                     LHALRYADSVSMTLSWQR"
     gene            10270..11163
                     /locus_tag="OQQ75_003217"
     CDS             10270..11163
                     /locus_tag="OQQ75_003217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HCS1977450.1"
                     /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR
                     VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINAS
                     DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL
                     LRTGVVLAPDGGILGKMLPPFRLGLGGPIDSGRQYLAWIHIDDMVNGILWLLDNELRG
                     PFNMVSPYPVRNEQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRL
                     EEAGFAFRWYDLEEALADVVR"
     gene            complement(11211..>11777)
                     /gene="rpnB"
                     /locus_tag="OQQ75_003218"
     CDS             complement(11211..>11777)
                     /gene="rpnB"
                     /locus_tag="OQQ75_003218"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS1977451.1"
                     /translation="AGYKELPLVIPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSS
                     AFPLVDITVVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLK
                     ALFNYVLQTGDAQRFRAFIGEIAERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQ
                     EMLDRGLDRELVMMVTRLSPDDLIAQSH"
BASE COUNT         2818 a         3123 c         2945 g         2891 t
ORIGIN      
        1 gatcaggtgt ttcactgaat aataacatcg ccatttagct gtttggtcac agtaatttgc
       61 tccagactgt ggaggaccaa atcgacctca ttcaggcgcg gggtatctgc cggagcgtta
      121 accgcaatga catggcaacc cgccgccagg ccagaaagca cgccagcggg agcatcttcc
      181 gccaccacac actcctgcgg cgcaagcccc agcagctgcg cacctaacag atacgcatca
      241 ggttctggtt ttccgcgctt cactcgctca gcggttacaa acacctctgg tgcgggaagc
      301 ccagctattt tatggcgcgc tcgcgctacc ggcatggagc cagaagtcac aatggcccac
      361 ggaatacctg ctttattcaa atgattgagt aaggcgattg cccccggaag cgcggtaata
      421 ccttcggttt ccgtggcctc gatgtgctcc agacacgtaa actcggcggc aatatcagcc
      481 tcggatttgc ccgccataaa atggcgcaaa gaggtgatcg cctgtttacc gtgaatgaaa
      541 gccagcacct cttccggcgc taacccatga cgtctggccc agttgctcca cgcccgttct
      601 accgcaggca gggaatccac cagcgttcca tcaagatcaa acagaaaacc tttgcaccgc
      661 acgcgggcct cctcaggcgt tgataatttg attaatttcg ttggcgctca aatggtactg
      721 acgcaggcag gcatgccaca cattaagcat gcgctgatat ttttcccaca ttggcgtctg
      781 ggcgttaaaa ccatgagtcc cagcgtcaaa atgggtatag cgcccttcca cattaaccat
      841 aaagcggaca taaccgaggt aacgtgcttc agtggcggcg tcaaagccga ggaaggtgac
      901 acgacgttca tcgatggatt gctggtcctg caaattagac caggaaacat gcaacgcatg
      961 atacatctcc ataatgtcga tgatagtgcg gcaggtttct tctttcagct cgccaaactc
     1021 gcgatccaat tcacgcatct gtaatccgta accacgctca ataattgttt gcaggcgacg
     1081 gtaacgttca gcatttgccg gatcgagcat agtcatcatc ttgtactgat tagacaaaat
     1141 aagacgttgc gcgttggtca tttccattgt tgactcctgt atcactctac tacggtgaaa
     1201 aaaaaagaag gctgagtatg ccttctttta tatgcgtaat caggggtcaa ttacaaatca
     1261 tcaaggaaag ttttatccag ttgtttgaag gcgcgcttaa gcgtgtcagc taatgcctgg
     1321 taatcaggct tgccttcaac gggtgccaac acctgtccag actcctgcaa tttaccgcga
     1381 acttcataaa accagttgag gatagcaggg ggtaatggcg ttacagaacg cttgcccagc
     1441 caccataatc cctgcatggg taaacttaag gcgaacagcg cagtggcaac tgccggccca
     1501 agctgaccgc ccagggcaat ctgccagcag agagtaaata cggcgatcgg cggcataaaa
     1561 cggatcgcat aacgcgtcat cttgataacg cgattttcga caaagaccgg ggcaaggcgt
     1621 ttttccagcg gccacgtctt tgagtaatgc tgtccccggc gaaacaagct aaaaaaatta
     1681 acagaacgat tatccggcgt tgacatgctt cacctcaact tcacatataa agattcaaaa
     1741 atttgtgcaa attcacaact cagcgggaca acattcaaaa cattttgtct tccataccca
     1801 ctatcaggta tcctttagca gcctgaaggc ctaagtagta catattcatt gagtcgtcaa
     1861 attcatatac attatgccat tggctgaaaa ttacgcaaaa tggcatagac tcaagatatt
     1921 tcttccatca tgcaaaaaaa atttgcagtg catgatgtta atcataaatg tcggtgtcat
     1981 catgcgctac gctctatggc tccctgacgt ttttttagcc acgtatcaat tataggtact
     2041 tccatgtcga gtaagttagt actggttctg aactgcggta gttcttcact gaaatttgcc
     2101 atcatcgatg cagtaaatgg tgaagagtac ctttctggtt tagccgaatg tttccacctg
     2161 cccgaagcac gtatcaaatg gaaaatggac ggcaataaac aggaagcggc tttaggtgca
     2221 ggcgccgctc acagcgaagc gctcaacttt atcgttaata ctattctggc acaaaaacca
     2281 gaactgtctg cgcagctgac tgctatcggt caccgtatcg tacacggcgg cgaaaagtat
     2341 accagctccg tagtgatcga tgagtctgtt attcagggta tcaaagatgc agcttctttt
     2401 gcaccgctac acaacccggc tcacctgatc ggtatcgaag aagctctgaa atctttccca
     2461 cagctgaaag acaaaaacgt tgctgtattt gacaccgcgt tccaccagac tatgccggaa
     2521 gagtcttacc tctacgccct gccttacaac ctgtacaaag agcacggcat ccgtcgttac
     2581 ggcgcgcacg gcaccagcca cttctatgta acccaggaag cggcaaaaat gctgaacaaa
     2641 ccggtagaag aactgaacat catcacctgc cacctgggca acggtggttc cgtttctgct
     2701 atccgcaacg gtaaatgcgt tgacacctct atgggcctga ccccgctgga aggtctggtc
     2761 atgggtaccc gttctggtga tatcgatccg gcgatcatct tccacctgca cgacaccctg
     2821 ggcatgagcg ttgacgcaat caacaaactg ctgaccaaag agtctggcct gctgggtctg
     2881 accgaagtga ccagcgactg ccgctatgtt gaagacaact acgcgacgaa agaagacgcg
     2941 aagcgcgcaa tggacgttta ctgccaccgc ctggcgaaat acatcggtgc ctacactgcg
     3001 ctgatggatg gtcgtctgga cgctgttgta ttcactggtg gtatcggtga aaatgccgcg
     3061 atggttcgtg aactgtctct gggcaaactg ggcgtgctgg gctttgaagt tgatcatgaa
     3121 cgcaacctgg ctgcacgttt cggcaaatct ggtttcatca acaaagaagg tacccgtcct
     3181 gcggtggtta tcccaaccaa cgaagaactg gttatcgcgc aagacgcgag ccgcctgact
     3241 gcctgatttc acaccgccag ctcagctggc ggtgctgttt tgtaacccgc caaatcggcg
     3301 gtaacgaaag aggataaacc gtgtcccgta ttattatgct gatccctacc ggaaccagcg
     3361 tcggtctgac cagcgtcagc cttggcgtga tccgtgcaat ggaacgcaaa ggcgttcgtc
     3421 tgagcgtttt caaacctatc gctcagccgc gtaccggtgg cgatgcgccc gatcagacta
     3481 cgactatcgt gcgtgcgaac tcttccacca cgacggccgc tgaaccgctg aaaatgagct
     3541 acgttgaagg tctgctttcc agcaatcaga aagatgtgct gatggaagag atcgtcgcaa
     3601 actaccacgc taacaccaaa gacgctgaag tcgttctggt tgaaggtctg gtcccgacac
     3661 gtaagcacca gtttgcccag tctctgaact acgaaatcgc taaaacgctg aatgcggaaa
     3721 tcgtcttcgt tatgtctcag ggcactgaca ccccggaaca gctgaaagag cgtatcgaac
     3781 tgacccgcaa cagcttcggc ggtgccaaaa acaccaacat caccggcgtt atcgttaaca
     3841 aactgaacgc accggttgat gaacagggtc gtactcgccc ggatctgtcc gagattttcg
     3901 acgactcttc caaagctaaa gtaaacaatg ttgatccggc gaagctgcaa gaatccagcc
     3961 cgctgccggt tctcggcgct gtgccgtgga gctttgacct gatcgcgact cgtgcgatcg
     4021 atatggctcg ccacctgaat gcgaccatca tcaacgaagg cgacatcaat actcgccgcg
     4081 ttaaatccgt cactttctgc gcacgcagca ttccgcacat gctggagcac ttccgtgccg
     4141 gttctctgct ggtgacttcc gcagaccgtc ctgacgtgct ggtcgccgct tgcctggcag
     4201 ccatgaacgg cgtagaaatc ggtgccctgc tgctgactgg cggctacgaa atggacgcgc
     4261 gcatttctaa actgtgcgaa cgtgctttcg ctaccggcct gccggtattt atggtgaaca
     4321 ccaacacctg gcagacctct ctgagcctgc agagcttcaa ccaggaagtt ccggttgacg
     4381 atcacgaacg tatcgagaaa gttcaggaat acgttgctaa ctacatcaac gctgactgga
     4441 tcgaatctct gactgccact tctgagcgca gccgtcgtct gtctccgcct gcgttccgtt
     4501 atcagctgac tgaacttgcg cgcaaagcgg gcaaacgtat cgtactgccg gaaggtgacg
     4561 aaccgcgtac cgttaaagca gccgctatct gtgctgaacg tggtatcgca acttgcgtac
     4621 tgctgggtaa tccggcagag atcaaccgtg ttgcagcgtc tcagggtgta gaactgggtg
     4681 cagggattga aatcgttgat ccagaagtgg ttcgcgaaag ctatgttggt cgtctggtcg
     4741 aactgcgtaa gaacaaaggc atgaccgaaa ccgttgcccg cgaacagctg gaagacaacg
     4801 tggtgctcgg tacgctgatg ctggaacagg atgaagttga tggtctggtt tccggtgctg
     4861 ttcacactac cgcaaacacc atccgtccgc cgctgcagct gatcaaaact gcaccgggca
     4921 gctccctggt atcttccgtg ttcttcatgc tgctgccgga acaggtttac gtttacggtg
     4981 actgtgcgat caacccggat ccgaccgctg aacagctggc agaaatcgcg attcagtccg
     5041 ctgattccgc tgcggccttc ggtatcgaac cgcgcgttgc tatgctctcc tactccaccg
     5101 gtacttctgg tgcaggtagc gacgtagaaa aagttcgcga agcaactcgt ctggcgcagg
     5161 aaaaacgtcc tgacctgatg atcgacggtc cgctgcagta cgacgctgcg gtaatggctg
     5221 acgttgcgaa atccaaagcg ccgaactctc cggttgcagg tcgcgctacc gtgtttatct
     5281 tcccggatct gaacaccggt aacaccacct acaaagcggt acagcgttct gccgacctga
     5341 tctccatcgg gccgatgctg cagggtatgc gcaagccggt taacgacctg tcccgtggcg
     5401 cactggttga cgatatcgtc tacaccatcg cgctgactgc gattcagtct gcacagcagc
     5461 agtaatctcg tcatcatccg cagctttgcg ctgcggatat ctgaaccgga aataatcact
     5521 atttccggtt ttttattctc ttaatctgca ttaatccttt ctgattatct tgcttaactg
     5581 cgctgcatca atgaattgcg ccatttcact ttgcatactt accactttgt tttgtgcaag
     5641 ggaatatttg cgctatgtcc gcaatcactg aatccaaacc aacaagaaga tgggcaatgc
     5701 ccgatacgtt ggtgattatc ttttttgttg ctattttaac cagccttgcc acctgggtag
     5761 ttccggtggg gatgtttgac agtcaggaag tgcagtatca ggttgatggt caaacaaaaa
     5821 cacgcaaagt cgtagatcca cactcatttc gcattctgac taacgaagca ggcgaacctg
     5881 agtatcaccg cgtacagctg ttcacgacgg gcgatgaacg cccgggcctg atgaacttcc
     5941 cgtttgaagg attaacctca ggatcgaaat acgggacagc tgttggcatc atcatgttta
     6001 tgctggtgat tggcggcgcg tttggcattg tgatgcgtac aggaaccatt gataacggta
     6061 tcctggcgct tattcgccat acccgcggga atgaaattct ctttattcct gcgctgttta
     6121 ttctgttttc acttggcggc gcggtatttg gtatgggaga agaggccgtc gcctttgcca
     6181 ttatcatcgc accgctaatg gtccggctgg gctatgacag tattaccacc gtcctggtga
     6241 cctatattgc cacgcaaatc ggttttgcca gttcgtggat gaacccgttt tgtgtggtcg
     6301 ttgctcaggg gattgccggc gttccggtgc tttctggctc cgggttgcgc atcgtggtgt
     6361 gggttatcgc cactatgatt ggcctgatct ttaccatggt gtacgcctca cgagtgaaaa
     6421 agaatcctct tctgtcacgc gtgcatgagt ccgaccgctt ctttcgtgaa aagcaggcgg
     6481 atgttgaaca acgtccgttt acctttggtg actggctggt attgattgtc ctgaccgccg
     6541 taatggtctg ggtgatttgg ggcgtgatcg ttaatgcctg gtttattcca gaaattgcca
     6601 gccagttctt caccatgggt ctggtgattg gcatcatcgg cgttgttttc cgccttaacg
     6661 gcatgacggt taataccatg gcttcatcct ttaccgaagg ggcgcgaatg atgatcgccc
     6721 ctgccctgct ggtgggtttc gccaaaggga ttttgctgct ggtcggtaat ggtgaagcgg
     6781 gtgatgccag cgtgttaaat accatcctca acagcattgc caatgccatt agcggtctgg
     6841 acaacgcggt cgcggcctgg tttatgttgc tcttccaggc ggtatttaat ttcttcgtga
     6901 cgtccggttc tggtcaggcg gcgttaacca tgccgttact ggcaccgctt ggcgatctgg
     6961 tcggtgttaa ccgtcagatt accgtgctgg cattccagtt tggtgatggc ttcagtcaca
     7021 tcatttaccc aacctcagct tcgttaatgg caactctcgg tgtgtgcagg gtggacttcc
     7081 gtaactggct gaaggtgggc gcgaccctac ttggactgct gtttattatg tccagcgtcg
     7141 tagtgatcgg cgctcagttg atgggctacc actaaaaatg ttaagagccg caattgcggc
     7201 tcttttttca ttctgccgtt tcagtctcta cggcttcatt tttggcattg cgcttcatcc
     7261 acaacgccag cgctttcagc gagtctggag tgaactcatc gcagcgtgcg gtgatttctt
     7321 ccggcgtcag ccagcaaact tcactgactt catcttcctg tagggcgaag ggaccgtgag
     7381 agacgcagct gaacaacgcg ccccagacac ggcaattttt atcttcgaaa tagaactgcc
     7441 cgtgctcggc aaaggggaca ccggcaatgc ccaactcttc ttccgcttcg cgacgcgcgg
     7501 attccagcag ttgctcatcg gcctgaacca caccgcctgc ggtcgcatct aacatgccgg
     7561 gtaaaaagtc ttttgtctcg gtacgacgct ggaccagaat tttgcccatg ccatcatgca
     7621 cgacgatgta agttgcacga tgacgcagac actgtgcccg catttgttcc cggctggctt
     7681 gtgcaatgac ttcgttctct tcattgacaa tatccaccca ttcagtactt gccaaacgac
     7741 gctgttccat tatcaggaaa ccttcttttt ctggcgctct tacggcgcat tttgagttgt
     7801 gggtaaatta cggattaatc gcgacctgcg caatgatact ttgatcattg agtgcgatta
     7861 cactaagtac gtcattatcc agcatgccat aactcgccgg attaccgcct ttcggaatac
     7921 tcaccgagcc ggggttgaag tggaaaatct ccccccgctg ttctgccact ggcagatggg
     7981 tatgaccgta caccagcaca tcgttctggt ttaaagcagg tagattttcc gggccaaaaa
     8041 gatgaccatg cgtcaaaaac agacgttgtt tttccagtaa tacctgttgc cacggcgcgg
     8101 ttatcgggaa atgcagcagc atttgatcca cttcgctgtc gcagttgccg cgcacagcga
     8161 taaccttatg tgccacttca ttaagccgtt cagcgacttt ggctggcgcg taaccctccg
     8221 gtaaagcatt acgcgggccg tgattcaaca cgtcgccaag gatcaccagc cactgggcac
     8281 cgctttgggc aaacaactcc agaacacgtt ccgtcgccgg taacgaccca tgaatgtccg
     8341 atgcaaacat cagtttcatc actcactcct cgtcgaaaaa acgtaagcta tgatactgga
     8401 ttctgtcgtt gctatcagcc agattgcttc gccgaaagtg caataaaacg ctggacagac
     8461 gctcgctgcc actggaatgt cgcataatcc accaggcgtt ctggcacctc atcgccatgt
     8521 agtaccaggc ggttaatcat tagcgccaga tcagtatcag caatgcacca ttcaccaaat
     8581 aaattcggct gacccagtgc taacaaatgt tctgccatcg cgacactggc ttttccctcg
     8641 gccgttagtg gcgctttttt cgcccccgca aagacaacat ccgtcggacg ctcttcgcgg
     8701 atgggcatca gatcgctgcg cagccaggcc tgaatctgtc gtgcacgcgc acgattttct
     8761 aaatcaagcg gataaatacg ttcccaggtc ggtggcgcaa atcgatcttc cagatactcc
     8821 gcaatggcag aagattcact caactcaaaa tcatcgattt gtaataacgg cacacggcgt
     8881 gtctgaccgt aaccttgcca cgtcggctgc aaatgttcac cgctgtcgag gtcgatggtc
     8941 ttgatatgaa acgacaggcc tttttcctgc aacgccaccc aagcggataa cacataaggg
     9001 gagaaaaagt gggcatctga ccaaagcgtg atagcgggtt tactcattat gtcctcggca
     9061 ataaaggagg ctggctatca aactatagag cctttttgtc actgtcacgt gacgaatact
     9121 cacgtaagtc gccgcgcttt ctatacttgt ggtgttcaga tgattaaaca accggagctg
     9181 caatgatcga tctctatttc gccccgacac ccaatggtca caaaattacg ctgtttctcg
     9241 aagaagcaga gcttgattat cgcttgatta aggtagacct ggggaaaggc ggtcagtttc
     9301 gtccggaatt tttgcgcatt tcgcccaaca acaaaattcc ggcaattgtt gatcattctc
     9361 ctgccgatgg cggcgaaccg ctaagcctct ttgaatctgg tgccattttg ttgtatctgg
     9421 ctgagaaaac ggggctcttt ttgagtcatg aaacgcgtga acgcgccgcc acattacagt
     9481 ggttattctg gcaggtaggc gaactggggc cgatgcttgg gcaaaatcat cattttaatc
     9541 acgcagcccc ccaaaccatt ccttacgcta ttgaacgtta tcaggttgaa actcagcgtc
     9601 tttaccatgt actaaacaag cggctggaaa actcgccctg gctgggaggc gagaactaca
     9661 gcattgcgga tattgcctgc tggccgtggg ttaatgcctg gactcgccag cgaattgacc
     9721 tcgcaatgta tccggcagtc aagaactggc atgagcggat ccgttcgcgc cctgccaccg
     9781 ggcaggcact gctaaaagca caactcggtg atgagcgttc ggatagttaa cagaaacagg
     9841 ttctcgtgta ttatttcatc ctaagtaaaa caacggagaa cctgcaatgg cacaacctgc
     9901 cgctattatt cgtataaaga accttcgttt acgtacgttt atcggaatta aggaagaaga
     9961 aattaacaac cgtcaggata ttgttatcaa tgtgacgatc cactaccccg ccgataaagc
    10021 gcgcactagc gaagatatca acgatgcgct gaattatcgc accgtaacga aaaacattat
    10081 tcagcatgta gagaataacc gtttctcttt gttggaaaaa ttaactcagg atgtgctcga
    10141 tatcgcacgt gaacatcact gggtgacgta tgctgaagtg gagatcgata aactgcacgc
    10201 gctgcgctac gccgattcgg tatccatgac cttaagctgg cagcgttaac cgccatatcg
    10261 ggaggctgca tgaacatagt gatcaccgga gggacgggat taattggtcg ccatttgatt
    10321 ccgcgtttgc tggagctggg ccatcaaatc acggtagtga cgcgtaaccc acagaaagcc
    10381 agttccgttc tcggccctcg ggtgacgcta tggcaagggc tagccgatca aagcaacctc
    10441 aacggcgttg atgcggtaat caacctggcc ggagaaccga ttgctgataa acgctggact
    10501 cacgagcaaa aagagcgtct ctgccaaagc cgctggaata tcacgcaaaa actggtcgat
    10561 ttgattaatg ccagcgacac gccgccgtcg gtactcattt ccggctcggc aacgggctat
    10621 tatggcgact taggtgaagt ggtggttacc gaagaggaac cgccgcataa cgaatttact
    10681 cataaactct gcgcccgctg ggaagagatt gcctgccggg cgcaaagtga caaaacgcga
    10741 gtgtgcctgc tgcgaaccgg cgtggtactg gcaccggacg gcggtattct cggtaaaatg
    10801 ctgccaccgt ttcgtcttgg cctgggcggg ccgattgact ctggtcggca gtatctggcc
    10861 tggattcata ttgatgatat ggtcaacggt attctctggc tgctggataa cgagctccgc
    10921 gggccattta atatggtttc gccctacccg gtacgcaatg aacaatttgc ccatgcgctc
    10981 ggtcacgcgc tgcatcgccc ggccattttg cgcgtccccg cgaccgccat tcgactgtta
    11041 atgggcgaat cttcagtact ggtattaggt ggacaacgcg cgctgcctaa acggctggaa
    11101 gaagcgggtt ttgcgtttcg ctggtacgat ttagaagagg cgctggcgga tgtcgttcgc
    11161 tgatgtggtt tacagcaaac atccgccagt taactcccgg tgttacagga ttagtggctt
    11221 tgcgcgataa gatcgtctgg tgaaagtcgg gtcaccatca taactaactc tctgtctaaa
    11281 cctctatcca gcatctcctg agcaatacgc agggcttctt cgtgtttgcc ctgcattgcg
    11341 ccttcttcac gtaatctgtc agcaatggtc atcagtttct ccttttcttg tggtgcgcgt
    11401 tccgctatct caccaataaa tgcacgaaaa cgctgggcat cccctgtttg taatacgtaa
    11461 ttaaacaggg cttttagctg tctgtcatta gtgttccctg taactagcag cgaaacaatt
    11521 tggtcgacta atcccaacag atcgcgctga cgaatatgtt tctgaattaa ctccaacagc
    11581 gccattttgc ggtgttgcat aatctcgtca tccggcacca cggtaatatc caccaacgga
    11641 aacgctgatg aatatatttt gcgggctata gcaggctcgg caaattcatc aagccagcag
    11701 agtgaataag gataaggact tctgcaacca tgataaaaca gcatcgggat caccaatgga
    11761 agctctttat agcccgc
//
LOCUS       DAJVUP010000134        11775 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.134, whole genome shotgun sequence.
ACCESSION   DAJVUP010000134 DAJVUP010000000
VERSION     DAJVUP010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11775
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.134"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            30..1415
                     /locus_tag="OQQ75_003219"
     CDS             30..1415
                     /locus_tag="OQQ75_003219"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000398460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HCS1977452.1"
                     /translation="MEGGWNEGGKGISIADVMTAGAHGVPREVTEGVIDGLNYPNHEA
                     IDFYHRYKTDIQLFAEMGFKCFRTSIAWTRIFPQGDEQEPNEEGLQFYDDLFDECLKQ
                     GMEPVVTLSHFEMPYHLVTKYGGWRNRKLIDFFIRFASTVFTRYKEKVKYWMTFNEIN
                     NQVNFSESLCPFTNSGILYSPEEDINEREQIMYQAVHYELVASALAVQTGKSINPEFN
                     IGCMIAMYPIYPLTCVPNDMMMATKAMHRRYWFTDVHARGYYPQHMLNYFARKGFNLD
                     ITPEDNAILASGCVDFIGFSYYMSFTTQFSPDNPQLDYVEPRDLVSNPYIDTSEWGWQ
                     IDPAGLRYSLNWFWDHFQLPLFIVENGFGAVDQRQADGTVNDHYRIDYFASHIREMKK
                     AVVEDGVDLIGYTPWGCIDLVSAGTGEMKKRYGMIYIDKDNEGKGTLERIRKASFYWY
                     RDLIANNGENI"
     gene            complement(1472..1690)
                     /gene="marB"
                     /locus_tag="OQQ75_003220"
     CDS             complement(1472..1690)
                     /gene="marB"
                     /locus_tag="OQQ75_003220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance protein MarB"
                     /protein_id="HCS1977453.1"
                     /translation="MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEQ
                     PPFDLNHMGTGSDKSDALGVPYYNQHAM"
     gene            complement(1722..2105)
                     /gene="marA"
                     /locus_tag="OQQ75_003221"
     CDS             complement(1722..2105)
                     /gene="marA"
                     /locus_tag="OQQ75_003221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707445.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     MarA"
                     /protein_id="HCS1977454.1"
                     /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR
                     MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV
                     PPHKYRMTNMQGESRFLHPLNHYNS"
     gene            complement(2125..2559)
                     /gene="marR"
                     /locus_tag="OQQ75_003222"
     CDS             complement(2125..2559)
                     /gene="marR"
                     /locus_tag="OQQ75_003222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance transcriptional
                     regulator MarR"
                     /protein_id="HCS1977455.1"
                     /translation="MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFK
                     VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT
                     SGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVLP"
     gene            2771..3436
                     /gene="marC"
                     /locus_tag="OQQ75_003223"
     CDS             2771..3436
                     /gene="marC"
                     /locus_tag="OQQ75_003223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter MarC"
                     /protein_id="HCS1977456.1"
                     /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS
                     LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP
                     EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP
                     PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK
                     TYH"
     gene            complement(3461..4651)
                     /gene="ydeA"
                     /locus_tag="OQQ75_003224"
     CDS             complement(3461..4651)
                     /gene="ydeA"
                     /locus_tag="OQQ75_003224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose MFS transporter"
                     /protein_id="HCS1977457.1"
                     /translation="MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFH
                     MQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFT
                     VLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIV
                     GQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLT
                     VVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASAL
                     VSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVA
                     MALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLE
                     EQTQ"
     gene            complement(4801..5915)
                     /gene="yneK"
                     /locus_tag="OQQ75_003225"
                     /pseudo
     CDS             complement(4801..5915)
                     /gene="yneK"
                     /locus_tag="OQQ75_003225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707449.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein YneK"
     gene            complement(5993..6874)
                     /locus_tag="OQQ75_003226"
     CDS             complement(5993..6874)
                     /locus_tag="OQQ75_003226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1977458.1"
                     /translation="MDLTQLEMFNAVAEAGSITQAAAIVLRVPSNLTIRLRQLETELG
                     VDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAV
                     RIPATLAEFNHRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINHTAIDGIPVYR
                     EELMIVTPQGHAPVIRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESY
                     HGMLACVVAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLE
                     AFIQLLDVPDSAKQGYQ"
     gene            6975..8363
                     /gene="sad"
                     /locus_tag="OQQ75_003227"
     CDS             6975..8363
                     /gene="sad"
                     /locus_tag="OQQ75_003227"
                     /EC_number="1.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="HCS1977459.1"
                     /translation="MTITPATHAISINPATGEQLSVLPWAGANDIENALQLAAAGFRD
                     WRETNIDYRAEKLRGIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAE
                     HGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLK
                     HAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGA
                     AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFII
                     EEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLL
                     LGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITVAKDAEHALELANDSEFG
                     LSATIFTTDETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHE
                     FCNIQTVWKDRI"
     gene            8427..9353
                     /gene="glsB"
                     /locus_tag="OQQ75_003228"
     CDS             8427..9353
                     /gene="glsB"
                     /locus_tag="OQQ75_003228"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HCS1977460.1"
                     /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA
                     ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV
                     QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS
                     EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA
                     IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI
                     AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY"
     gene            9353..9712
                     /locus_tag="OQQ75_003229"
     CDS             9353..9712
                     /locus_tag="OQQ75_003229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HCS1977461.1"
                     /translation="MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAAD
                     FVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQR
                     YIVAVIYHWLVVQMNQP"
     gene            9851..11269
                     /locus_tag="OQQ75_003230"
     CDS             9851..11269
                     /locus_tag="OQQ75_003230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1977462.1"
                     /translation="MHVHPISTFRLFQEGHLLRNSIAIFALTTLFYFIVAELRLVHEL
                     SLFWPLNGVMAGVFARYVWLNRLHYYAISYVAMLVYDAITTEWGLVSLVINFSNMMFI
                     VTVALLVVRDKRLGKNKYEPVSALRLFNYCLIAALLCAIVGAIGSVSIDSLDFWPLLA
                     DWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF
                     PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPEMFSARLGIA
                     TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTV
                     MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP
                     VDGLLMAEKIRKGVELQPFTWQQKTLYLMVSIGVGSGRASYRTLTDDFNKLMVEADTC
                     LYRSKKDGRNRTSTMRYGEEVV"
     gene            11496..11735
                     /locus_tag="OQQ75_003231"
                     /pseudo
     CDS             11496..11735
                     /locus_tag="OQQ75_003231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="catalyzes the formation of D-tagaturonate from
                     D-altronate; incomplete; partial in the middle of a
                     contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase"
BASE COUNT         2987 a         2658 c         3027 g         3103 t
ORIGIN      
        1 tatggggcgg cgcggtagcc gcgcatcagt tggaaggtgg ctggaatgaa ggaggaaaag
       61 gcatcagtat cgctgatgtg atgactgctg gcgctcacgg ggtgccgcgt gaagtgacag
      121 aaggcgttat cgacgggctt aattatccca atcatgaagc aattgatttt tatcatcgct
      181 ataaaacaga tattcagtta tttgccgaga tgggattcaa atgctttcga acttccattg
      241 cctggacacg aatctttccg caaggtgacg aacaggagcc gaatgaagag ggtttacaat
      301 tttatgatga tctgttcgat gaatgcctta agcagggaat ggaacctgtg gtgacgcttt
      361 cacattttga gatgccttat catctggtga caaaatatgg tggctggcga aaccgtaaac
      421 tgatcgactt ttttatccgc ttcgcatcaa cggtcttcac gcgctataaa gaaaaagtaa
      481 agtactggat gacgtttaac gaaatcaata atcaggtgaa tttcagcgaa agcctgtgtc
      541 catttactaa ttccggtatc ttgtattcgc cagaggaaga tatcaatgag cgcgaacaaa
      601 taatgtacca ggcggtacat tacgagttag ttgccagtgc cctggcggta cagactggaa
      661 aatcgatcaa tcctgaattt aacattggct gtatgatcgc catgtatccc atctatcctc
      721 tgacgtgtgt acccaacgat atgatgatgg ccacgaaagc aatgcatcgt cgttactggt
      781 ttactgatgt tcatgctcgt ggatattatc cgcaacatat gctgaattac tttgccagga
      841 aaggattcaa cctcgatatc acaccagaag ataacgcgat tcttgccagt ggttgtgtcg
      901 actttatcgg ctttagctac tacatgtctt ttacgacaca attttcgccc gataacccgc
      961 aactggatta tgttgaacca cgagatttgg tcagcaaccc ttatatcgat acatccgaat
     1021 ggggatggca aattgatccg gcagggctac gttattcact caactggttc tgggatcatt
     1081 tccagttgcc gctgtttatt gtcgaaaatg gatttggtgc ggttgaccag agacaagctg
     1141 acggcacggt gaacgatcac tatcgcattg attactttgc ttcccatatt cgggaaatga
     1201 aaaaagccgt agttgaagat ggtgttgact taattggcta caccccgtgg ggctgcattg
     1261 acctggtttc tgccggaaca ggggaaatga aaaagcgcta cggaatgatt tatatcgata
     1321 aagacaacga agggaaggga acgctggaac ggatacgtaa agcgtcgttt tactggtatc
     1381 gggatctcat cgccaacaat ggcgaaaata tttgagactt gaggaagata ttacggagat
     1441 gtcaggctct gtgatcagag cctgacaata actacatagc gtgttgatta taatagggca
     1501 cgccgagcgc atccgactta tcactgccag tacccatgtg atttaaatca aacggtggtt
     1561 gttcctgcga tgggggaaca accacgacat tggcacaaga agtaacaact ggctgcgtgg
     1621 tttgttccgc aacgccctgc gcggaaaaga gaataagcgc agctgctatt gcggatgaaa
     1681 gtggtttcat gattgcctca gtgacgttgt cacgttatca actagctatt gtaatgattt
     1741 aatggatgta aaaagcgcga ttcgccctgc atattggtca tccggtattt atgtggcgga
     1801 acatcaaagt aatttttgaa ggttcgggtc agagtttgtt gcgactcgaa gccatatcgt
     1861 tctgccagat agagtatcgg ctcgttactt tccttcagct tttgcgcgat ttccgtcatc
     1921 ttacggctgc ggatgtattg gcctaatgaa tgaccggttt cttttttaaa catccgttgc
     1981 aggtgccatt tagagtaacc tgaacgctct gacactttct ccagtgacag tggcgattcc
     2041 aggttgtcct cgatccagtc caaaatgcta tgaatggtaa tagcgtcagt attgcgtctg
     2101 gacatcgtca tacctctttt ttgtttacgg caggactttc ttaagcaaat gctcaagtgt
     2161 tgccacttcg tccgccgtca ggttttttgt taattcttga tgcaggtcct ggccaactaa
     2221 ttgatggcat tgttcgcata ttgccgcgcc gctggtggta agttttacca gtacgccgcg
     2281 cttatcattc gggttcggca acctttcaac ccagccttta cagaccaggc gatccagcat
     2341 acgggtcagt gctccaaggt cgacagacaa cacttttttc agttcaaccg gagtaataca
     2401 cgccgcgcag cggatagagc agagcacctt aaactgtgcc gcggtaatat ccagcggaga
     2461 cagatactcg ttaagcagac gatctttctt ctgattaacc atatggatta agcgacccaa
     2521 tggaataatt tcattgaaca gatcgctggt acttttcaca ttagttgccc tggcaagtaa
     2581 ttagttgcag ggggtaatat tgcccaggca agtataagtc aaataaatga attgaccgat
     2641 gccacgtttt gctaaatcgg ttcaagtttt ggtcaatgcg atgcaaggtt agctaaagag
     2701 tgacacttta tccttgttta ccccttatac ttttcgctga taacccagat acactggata
     2761 acaaccacca atgttagatt tgtttaaagc aattggcctg gggctggtgg tgttactgcc
     2821 gttagctaac ccattaacaa ctgtcgcgtt atttcttggc ctggcaggca acatgaacag
     2881 tgccgaacgt aatcgtcagt cgttgatggc ctcggtgtac gtatttgcca tcatgatggt
     2941 ggcgtattac gccgggcaac tggtgatgga tacatttggc atttcgattc ccggtctgcg
     3001 aattgcaggc ggcttaatcg tcgcgtttat cggttttcgg atgctctttc cgcaacagaa
     3061 agcgattgat tcaccggagg cgaaaagcaa gtcggaagag ctggaagatg aacccagtgc
     3121 caatattgcc tttgtgccgc tagcaatgcc aagtaccgct ggtccgggaa ccatagcgat
     3181 gattattagc tcggcgtcca cagtgcgtca gagttcaacc ttcgctgatt gggtactgat
     3241 ggttgcgccg ccgctgatct ttttcctggt ggcggttatt ttgtggggaa gcctacgcag
     3301 ctccggcgca attatgcggc tggtgggcaa gggtggcatt gaagcgatct cccgtctgat
     3361 gggattcctg ctggtatgta tgggtgtgca gtttattatt aacggcatcc tggaaatcat
     3421 taaaacgtac cattaaaaaa ggcccgaatg ggcctttcaa ctattgcgtc tgttcttcga
     3481 gtgtcactgg ccagcggcga aatataatga ttgaccatat taacgcggca aaagcaggca
     3541 ccgcgcccac ataaccaatc atcgacattg accagtgcaa actcacctga ttacctacca
     3601 acgcacccgc cccgattcca atattaaata tgccggagaa tagcgccatc gcgacgtcgg
     3661 tagcatctgg tgccagcgcc agcactttaa cctgcatacc aagcccgatg atcatcatcg
     3721 cgatccccca gaaaatactc agcaccccga ggtgtatttc actgttcgcc gcaggtagca
     3781 gcagtgccag acacaccagc aacagcgcaa tcgccgtact caccaacgca gacgcatact
     3841 gattacccag tttaccgaaa atcacgctgc caataatgcc cgcaccaccg agtaataaca
     3901 gtaatgccgt ggcaaagttg gcgctgaatc ccgcaatgtt ttgcacaaaa ggctcgatat
     3961 agctgtatgc cgtgtaatgg gcggtgacaa ccaccacagt taacaaataa atgctcatca
     4021 atgccgggcg gcggaacaat agcgggaggc ttttcaatga accggaatgc tcactgggca
     4081 gtaagggaag taacttaatc aggcacaaaa gggtgataag cgccccaata ccaatcgcga
     4141 agaaggtcat tcgccaaccg aaatactgcc ccacaatgcg cccgagaggt aaacctaaga
     4201 ccatcgccag tgctgtaccg gtggcaatta aactcaaggc ctgtgcccgc ttcccggccg
     4261 gagccatacg gatcgccaga gacgccgtaa tcgaccagaa aatcgcatgt gcaaaagcca
     4321 caccaatgcg actgatcacc agaacggtaa agctccacga taaaaacgac agtacgtggc
     4381 tggcaataaa caccacaaac aggcagatca gtaatttgcg ccgttcaacc tgactggtca
     4441 ttaacataaa aggcaatgac attagcgcta ctacccatgc gtaaatggtc aacatgatgc
     4501 cgacctgagc ggtttgcatg tgaaaacttt gcgcaatgtc agagagcagg ccaacaggga
     4561 caaattcggt ggtgttgaag atgaaggcgg cgactgccag cgtaacgacc cgtagccacg
     4621 ccactttgcg ggaaacagtg tttgttgtca taacagatta tcgggtgagt tgcgaaaaag
     4681 tgatgaaatg atcttaaaac ggttaatgat gtgaatacaa tgcatttgtg atctggatcg
     4741 cgttttccgt ttctctgacg ctgattctgt tccgcgtcag agagtcggta acatcacggt
     4801 ttaatgacgt tcagggaggt ctggcgtttt ggcggttgcg ggtataggtg gtctgacagg
     4861 ggagcgaggc ctgtttttca ccaggtcttc gtgagtaact tttggcggcg tttcattttt
     4921 tacaaacagt ttgagggtcc tgcgcgccat atgcttgata attttatcat cacttaatga
     4981 tgctggcatc aacacgtcat tcagatcact ttcattggga ttcataaatt ggtgatagtg
     5041 caataacata ttggcgaaaa ataaaaaaaa gtcctgaaaa tgaggagatt cttgttctgc
     5101 taaaagggat aaaaagcaga tgcagacttc gggtagtaca tgtttgttag aacctaatga
     5161 atccatcagg ctttgcaata aatcctcttt taattcgccg tctgttatgt cgagaatggc
     5221 ggtgatcaag ttaggatctt tattgacgaa ccatctgtga acctcagagt tactccataa
     5281 tcgggggagt atgacaaaat taccgcgaga gataaaattc aggacaagca aatcaaactg
     5341 gcgtaagtaa tctgcagcgg tatggtgatc cggaggcagg ggttcaatat gtggtgtatg
     5401 cgcttttttg atggggacgc caaggtggat cattggaaat tgttcaataa aatcattcag
     5461 aaacagaaag agcacacgct cgacgccggt gtgaaatacg cgccccatag tgacaggctt
     5521 tgggttggga gcgcaaaaat attaatttct ccatcatggc gaaaattatc taaataaata
     5581 gggtttaaat ttattactac ctgaaattca atattttctt tgtgtcttcc attcttgacg
     5641 ggataagtga gtttaaactg aaccttttca ttgtatagtg tgtcgttacc ccgaaaagaa
     5701 gtcctctgaa tatatgataa gttatcaagg ttgttaaata tcttttttgt ggctgagttg
     5761 gtgtttaaag acgtgcgcca ctcttcatca catattatgg tactgagtgc atcaataaaa
     5821 ttctttaaaa cttcttttac ctgaggtgca atattacgta cgggaaaatc atcaggaaga
     5881 aatatgtaat tactgatgct tactggcgta accatatttg ccccatatag tcataagtca
     5941 tcggaacatc actatatagg gcatttgagc tgcaagaact atcaaaaata gctcattggt
     6001 aaccctgttt tgccgagtca ggcacatcca gtagttgaat aaatgcctca agcggacgcg
     6061 ttttcgcacc acgacgccag accagccagg ttgttaacca acgccattgc tcagctaacg
     6121 gccacgcttc aacctggtga tgccccggca tactttccag catagagcgt ggaataagcg
     6181 caatgcctgc tcctgcgacc acacaggcca acatcccgtg atacgactcc atctcgtgaa
     6241 tagttcccgg agcggcaccg tcagcatgaa accagctctc gaagtggcga cgatacgaac
     6301 aattggcgcg gaaggcataa atgttactgc cgttaacctg actggcgcgg attactggcg
     6361 catgaccttg tggcgtgacg atcatcagct cctcgcggta taccggtatc ccgtcaatgg
     6421 cagtatggtt aatgggccca tcaataaatg ccgcattcag ttttccctcc agcactcctt
     6481 ccagcatagt gccggaaggg ccggtggaaa gtgaaaactg aattttggga taacgatggt
     6541 tgaattccgc cagcgtggcc ggaatgcgca ctgctgcggt gctttccagc gaaccaagag
     6601 aaaataaacc ttgcggctca tcgccagcga caacgctccg cgcttcatcc actaacgcga
     6661 gaatttgttg gctatagcgt aaaaagttat gcccggcagg agagagacgt aaacgctgat
     6721 tctcgcgaat aaacagatct acccccagtt ctgtttccag ctggcgtaga cggatagtga
     6781 gattcgacgg cacgcgaagc actattgctg ctgcctgggt tatgctgcca gcttcggcaa
     6841 ccgcgttgaa catctccagt tgggtcagat ccataatatt ctcgattcgt gaataagtgg
     6901 cttaatatta ttcattttaa agcaagagta aatctgcgta tcttcatacc atgactcata
     6961 aaggagatac cccgatgacc attactccgg caactcatgc aatttcgata aatcctgcca
     7021 cgggtgaaca actttctgtg ctgccgtggg ctggcgctaa cgatatcgaa aacgcacttc
     7081 agctggcggc agcaggcttt cgcgactggc gcgagacaaa tatagattat cgtgctgaaa
     7141 aactgcgtgg tatcggtaag gctctgcgcg cccgtagcga agaaatggcg caaatgatca
     7201 cccgtgaaat gggcaaacca atcaatcagg cgcgcgctga agtggcgaaa tcggcgaatt
     7261 tgtgtgactg gtatgcagaa catggtccgg caatgctgaa ggcggaacct acgctggtgg
     7321 aaaatcagca ggcagttatt gagtatcgac cgttggggac gattctggcg attatgccgt
     7381 ggaactttcc gttatggcag gtgatgcgtg gcgcggttcc catcattctt gcaggtaacg
     7441 gctacttact taaacatgcg ccgaatgtga tgggctgtgc tcagctcatt gcccaggtgt
     7501 ttaaagatgc gggaatcccg caaggcgtat atggctggct gaatgccgac aacgacggtg
     7561 tcagtcaaat gattaaagat tcgcgcattg ctgctgtcac ggtgaccgga agtgttcgtg
     7621 cgggagcggc tattggcgca caggctggag cggcactgaa aaaatgcgta ctggaactgg
     7681 gcggttcgga tccatttatt gtgcttaacg atgccgatct ggaactggcg gttaaagcgg
     7741 cggtagccgg acgttatcag aataccggac aggtttgtgc agcggcaaaa cgctttatta
     7801 tcgaagaggg aattgcttct gcatttaccg aacgttttgt ggcagctgcg gcagccttga
     7861 aaatgggcga tccccgtgat gaagagaacg ctctcggacc aatggctcgt tttgatttac
     7921 gtgatgagct gcatcatcag gtggagaaaa ccctggcgca gggtgcgcgt ttgttactgg
     7981 gcggggaaaa gatggctggg gcaggtaact actatccgcc aacggttctg gcgaatgtta
     8041 ccccagaaat gaccgcgttt cgggaagaaa tgtttggccc tgttgcggca atcaccgttg
     8101 cgaaagatgc agaacatgcg ctggaactgg ctaatgatag tgagttcggc ctttcagcga
     8161 ccatttttac caccgacgaa acacaggcca gacagatggc ggcacgtctg gaatgcggtg
     8221 gggtgtttat caatggttat tgtgccagcg acgcgcgagt ggcctttggt ggcgtgaaaa
     8281 agagtggctt tggtcgtgag ctttcccatt tcggcttaca cgaattctgt aatatccaga
     8341 cggtgtggaa agaccggatc tgacgcgaca tattcagctc tgatatactc gcaggtcttt
     8401 tcagacctgc ggtccaggag tagaaagtgg cagtcgccat ggataatgca attttagaaa
     8461 acatcttgcg gcaagtgcgg ccgctcattg gtcagggtaa agtcgcggat tatattccgg
     8521 cgctggctac agtagacggt tcccgattgg gtattgctat ctgtaccgtt gacggacagc
     8581 tttttcaggc cggagacgcg caagaacgtt tttccattca gtctatttcc aaagtgctga
     8641 gtctcgttgt cgccatgcgt cattactccg aagaggaaat ctggcaacgc gtcggcaaag
     8701 atccgtctgg atcaccgttc aattctttag tgcaactgga aatggagcag ggtattccgc
     8761 gtaatccgtt tattaatgct ggtgcgctgg tggtctgcga tatgttgcaa gggcgattaa
     8821 gcgcaccacg gcaacgtatg ctggaagtcg tgcgcggctt aagcggtgtg tctgatattt
     8881 catacgatac ggtggtagcg cgttccgaat ttgaacattc tgcgcgaaat gcggctatcg
     8941 cctggctgat gaagtcgttt ggcaatttcc atcatgacgt gacaaccgtt ctgcaaaact
     9001 actttcatta ctgcgctctg aaaatgagct gtgtagagct ggcccggacg tttgtctttc
     9061 tggctaatca ggggaaagct attcatattg atgaacctgt ggtgacgcca atgcaggcgc
     9121 ggcaaattaa cgcgctgatg gcgaccagtg gtatgtacca gaacgcgggg gagtttgcct
     9181 ggcgggtggg gctaccggcg aaatctggcg ttggtggcgg tattgtggcg attgttccgc
     9241 atgaaatggc catcgctgtc tggagtccgg aactggatga tgcaggtaac tcgcttgcgg
     9301 gtatcgccgt ccttgaacaa ttgacgaaac agttagggcg ttcggtttat taatgcagtc
     9361 tctcgatcca ctcttcgcgc gtttatcccg ttcaaaattt cgctctcgct ttcgtctggg
     9421 catgaaagag cgtcagtatt gcctggagaa aggcgcgcca gtcatcgaac aacatgcggc
     9481 ggattttgtc gctaaacgtc ttgctccggc attaccggct aatgacggta agcaaacacc
     9541 catgcgcggg catccggtgt ttatcgctca gcacgccacc gcgacctgct gtcgcggttg
     9601 tctggctaag tggcataaca ttccgcaggg tgtttcgtta agcgaagaac aacaacgtta
     9661 tatcgtggcg gtaatctatc actggctggt tgtacagatg aatcagccat gagaattgcg
     9721 gaaaacgata aaatagcatt cccagggtac ctttatttgc cgccgctgtt agcgaacatg
     9781 ctatccttta tgagaattta cttattacgt tgagataatt gccacccgca attgtatgga
     9841 cagataatta atgcatgtac accccatttc aactttccgt ttgttccagg aaggtcatct
     9901 gctacgtaat agcatcgcta tttttgcgct aaccacgctg ttctatttta ttgttgcaga
     9961 gttacggctg gttcacgaac tttctctttt ctggccgctg aatggcgtaa tggcgggggt
    10021 gtttgcccgc tatgtctggc ttaatcgact gcattactat gcgatcagtt atgtggcgat
    10081 gctggtttat gatgccataa ccaccgaatg gggactggtt tcactggtta tcaatttctc
    10141 caatatgatg tttattgtta ccgtcgcctt actggtcgtg cgggataagc gtctggggaa
    10201 aaataagtat gagccagtaa gtgccttacg gctatttaat tactgtctga ttgccgcatt
    10261 attatgcgct attgtcgggg cgattggttc ggtcagtatt gatagtctgg atttctggcc
    10321 tttgcttgcg gactggttca gtgagcaatt ctcaacgggc gtgttgatcg tgccttgtat
    10381 gctgacgttg gctattcctg gagtgctgcc gcgctttaaa gcagaacaga tgatgcccgc
    10441 catcgcgctt attgtgtcgg ttattgcctc ggtagtcatt ggcggagcgg ggagtctggc
    10501 gttcccgctg cctgcattaa tctggtgtgc agtgcgctat acgccgcagg taacatgtct
    10561 gttgaccttt gtcaccggtg cggtggaaat cgtactggtg gcaaattcgg tgattgatat
    10621 ctcggtcggt tcgccgttct ccattccgga aatgttctcc gcacgtctcg gtattgccac
    10681 gatggcgata tgcccaatta tggtttcttt tagcgtggca gcgatcaatt cgctaatgaa
    10741 gcaagttgcg ctgcgagccg actttgattt tctgactcag gtttactcac ggtccggtct
    10801 ttatgaggcg ctgaaaagtc catcgctgaa acagacacaa catctgacgg tcatgctgct
    10861 tgatatcgac tatttcaaaa gcattaacga taactatgga catgaatgtg gcgataaagt
    10921 gttaagcgtg tttgcccggc atattcagaa gattgtcggt gataaggggc tggtggcgcg
    10981 catgggcggc gaagaatttg ctgttgcagt gccgtcggtg aatcctgtcg atggtctgct
    11041 aatggcggaa aaaatccgta aaggcgttga actgcaacca ttcacctggc aacaaaaaac
    11101 gctttatctc atggtaagta ttggcgtcgg tagtggtcgc gcatcgtacc gaacgctgac
    11161 cgatgatttt aataaattga tggtcgaagc cgatacgtgt ctgtatcgct cgaagaaaga
    11221 tgggcgcaac cgtaccagca ctatgcgtta cggtgaggaa gttgtctgac atctttattc
    11281 attccgcgcg atttgaatgc aatgtgttct accactttat gatccaggaa aaggcgtatt
    11341 tcctcgatta aaccatgatc cgcgccacac ttttctcata aaactgctca ttaatcatca
    11401 ggagttgatc aaaacagggg ttcggcgtat taaattttgc taacctgtcg caccaattca
    11461 agcgggttgt atgactaatc agaagggaac ccattgtgaa aacactaaat cgtcgcgata
    11521 ttcccggtgc acagtatcca gaacgtatca ttcagtttgg tgaaggtaac ttcctgcgcg
    11581 cctttgttga ctggcaaatc gatctcctga atgagcacac cgatctgaat tctggcgtgg
    11641 tcgttgttcg tccgattgaa acttcattcc cgccgtcact gagcacgcag gatggtctgt
    11701 acaccaccat tatccgtggc ctgaatgaga aggggtgaag tggtcaacaa aaactggcca
    11761 ccgagttaga gtttt
//
LOCUS       DAJVUP010000135        11755 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.135, whole genome shotgun sequence.
ACCESSION   DAJVUP010000135 DAJVUP010000000
VERSION     DAJVUP010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11755
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.135"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            447..1103
                     /gene="pphA"
                     /locus_tag="OQQ75_003232"
     CDS             447..1103
                     /gene="pphA"
                     /locus_tag="OQQ75_003232"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS1977463.1"
                     /translation="MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPW
                     RDLLISVGDVIDRGPQSLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGD
                     WFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQ
                     VLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ
                     "
     gene            complement(1104..1295)
                     /locus_tag="OQQ75_003233"
     CDS             complement(1104..1295)
                     /locus_tag="OQQ75_003233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebW family protein"
                     /protein_id="HCS1977464.1"
                     /translation="MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCF
                     PIEDFIDGFWRPAQEYGDF"
     gene            complement(1400..1636)
                     /locus_tag="OQQ75_003234"
     CDS             complement(1400..1636)
                     /locus_tag="OQQ75_003234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1480 family protein"
                     /protein_id="HCS1977465.1"
                     /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAW
                     DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA"
     gene            complement(1754..3193)
                     /gene="rsmF"
                     /locus_tag="OQQ75_003235"
     CDS             complement(1754..3193)
                     /gene="rsmF"
                     /locus_tag="OQQ75_003235"
                     /EC_number="2.1.1.178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase
                     RsmF"
                     /protein_id="HCS1977466.1"
                     /translation="MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVN
                     TLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEA
                     SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHA
                     NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN
                     QEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD
                     LFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKD
                     REAGQIRQAAAGVGLNWDENLRLWQRDKELWLFPVDIEALIGKVRFSRLGIKLAETHN
                     KGYRWQHEAVIALATPDNVNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPI
                     GLAKRIGSRLKNSYPRELVRDGKLFTGNA"
     gene            complement(3273..5906)
                     /gene="yebT"
                     /locus_tag="OQQ75_003236"
     CDS             complement(3273..5906)
                     /gene="yebT"
                     /locus_tag="OQQ75_003236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416348.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding membrane homeostasis protein YebT"
                     /protein_id="HCS1977467.1"
                     /translation="MSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQD
                     RSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDAL
                     REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNNGD
                     LMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKG
                     SRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAH
                     SQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTL
                     LRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDV
                     LTLTLTAPESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSK
                     FVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENS
                     LSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNL
                     LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILY
                     ASETAARAVSGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLY
                     PEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPYINVEPGRGNPRRDFELQEATIT
                     DSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY
                     QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGK
                     HFLLQESEPKEWREWGTALPK"
     gene            complement(5875..7158)
                     /gene="yebS"
                     /locus_tag="OQQ75_003237"
     CDS             complement(5875..7158)
                     /gene="yebS"
                     /locus_tag="OQQ75_003237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity lipid transport subunit YebS"
                     /protein_id="HCS1977468.1"
                     /translation="MALNTPQITPTKKITVRSIGEELPRGDYQRCPQCDMLFSLPEIN
                     SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV
                     MQGIWQMTKQGDTITGAMVFFCVIGAPLILVSSIAYLWFGNRLGMNLRPVLLMLERLK
                     EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERYY
                     PQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVL
                     LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT
                     LLLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA
                     FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD"
     gene            7288..7785
                     /gene="msrC"
                     /locus_tag="OQQ75_003238"
     CDS             7288..7785
                     /gene="msrC"
                     /locus_tag="OQQ75_003238"
                     /EC_number="1.8.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine (R)-S-oxide reductase"
                     /protein_id="HCS1977469.1"
                     /translation="MNKTEFYADLNRDFNALMAGETSFLTTLANTSALLYERLTDVNW
                     AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDA
                     ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF
                     ASVAG"
     gene            7882..8580
                     /gene="proQ"
                     /locus_tag="OQQ75_003239"
     CDS             7882..8580
                     /gene="proQ"
                     /locus_tag="OQQ75_003239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707288.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HCS1977470.1"
                     /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD
                     RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ
                     LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK
                     PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN
                     SGMSLIVRAEHLVF"
     gene            8600..10648
                     /gene="prc"
                     /locus_tag="OQQ75_003240"
     CDS             8600..10648
                     /gene="prc"
                     /locus_tag="OQQ75_003240"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HCS1977471.1"
                     /translation="MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATV
                     SERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGD
                     ELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEA
                     ELNALWDSKVKFDELSLKLAGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF
                     AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAI
                     SVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLT
                     RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDL
                     RSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFS
                     ASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI
                     QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTA
                     FGPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRL
                     ARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK
                     "
     gene            10840..11721
                     /gene="htpX"
                     /locus_tag="OQQ75_003241"
     CDS             10840..11721
                     /gene="htpX"
                     /locus_tag="OQQ75_003241"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014229823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HCS1977472.1"
                     /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGF
                     GGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAP
                     DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN
                     TFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFS
                     RHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH
                     PPLDKRIEALRTGEYLK"
BASE COUNT         3019 a         2893 c         3036 g         2807 t
ORIGIN      
        1 gcaagaacgt gccacggctg gctgatggat gttcgatagc gtgagtttga atgaaaatca
       61 gccggagatg attttacata attgctacgg aattattcaa tacaggaatt gcttgcgtct
      121 gcatggattg acctgaaatt ttcccgaaaa tttctctaaa aaactcgaaa aaaatggtaa
      181 ctggttgaat gtattaatat gcaatggtac gtgtcaggga ttaaaagatg aacgtaaatt
      241 tattcaacgc attaatttta aagggtttta ttgtttgttg acgaaaacag gaatcgtgtt
      301 cggtctcttt ttatctgtta aaagccagaa gcatttcctt cgctgacttt atagtcaacc
      361 ataacacaca ctctactgtc tgagtccagc gttttttaac attcttgtta agattatgtg
      421 atctttagca cgggaggaaa atattgatga aacagcctgc gcccgtttat cagagaattg
      481 cgggtcatca atggcgacat atctggcttt ctggcgatat acacggttgt cttgagcagt
      541 tgcgccgcaa attatggcat tgtcgttttg atccgtggcg agatttactt atctcagtgg
      601 gagacgttat cgatcgtggg ccgcaaagtt tacgttgtct gcagttactg gaacaacatt
      661 gggtttgtgc ggtaagaggc aatcatgaac agatggcgat ggatgcgctg gcatcccagc
      721 agatgtcttt gtggttgatg aatggcggcg actggtttat tgcgctggca gataatcaac
      781 agaaacaagc gaaaacggcg ctggaaaaat gtcagcattt gccctttatt cttgaagtac
      841 acagtcgcac cggcaagcat gttattgctc atgcggatta tccagatgat gtttatgaat
      901 ggcaaaagga cgttgatttg catcaggtct tgtggagccg ctcgcgatta ggtgaacgcc
      961 aaaaagggca gggaattaca ggtgctgatc atttctggtt tggtcataca ccgttgcgac
     1021 atcgcgtgga tattggcaac ctgcattata ttgataccgg tgctgtcttt gggggcgaac
     1081 tgactcttgt gcaattgcaa tgattaaaaa tcaccgtact cctgtgcagg tcgccagaaa
     1141 ccatctataa aatcctcaat cggaaaacaa ccgccctggc ggatccgttg atcgctcata
     1201 gaataaagac actgctgttc cgtgttgtag acatccacaa caatatcttc acaaccgcca
     1261 tccaggtagc aaacaaaaag taccagcgcg aacatttcat ccccgaagtg tggtgccgta
     1321 ccgttaagtt taggagagat tttacaacgg gggaataacc aggacaaata acccgccatg
     1381 ccgacgggtt ctttttggat caggcaagac gcataatcca ggcatcagat tgttgatcgt
     1441 aacgggtacg gtaaaggaca gagtgttcgc catttagcag ggcagggata ctggtttcag
     1501 catcccaggc atcgagttgc atacataaat cggggtcaga tttacaagga atggttaacg
     1561 ttcgatcacc cggcgattca ccgtgtaatt cgccgtcgtc gatttcaaaa gcgcctatgc
     1621 gcacactggt tttcatcttc gtgctctcca tttagctgcc ggttgtggta cgaccagtcc
     1681 gatcgcacca tttttcagcc tagttgaggc agccgaatgt gccagtcaaa aagtgcgctt
     1741 tttttgtgcg ctgtcaggcg ttaccggtaa aaagtttccc atcgcgcacc agttcacgcg
     1801 gatagctgtt tttcaatcgc gaaccaatcc gtttggctaa accaatcggt tgatgctgga
     1861 aagtaaccaa cacgtcatcc gccactggcg cggcttgcgg gtaaacatcg cgcccgcgat
     1921 accactcctc cgcttcctgc ggtgtcagtt caaaagcgtt cacattgtcg ggggtggcaa
     1981 gggcaataac tgcttcatgc tgccagcgat aacctttgtt gtgcgtttcg gcaagtttaa
     2041 tccccaagcg agaaaatcgg actttaccga tcagggcttc aatgtccacc gggaacaacc
     2101 acagttcttt gtcacgctgc cagaggcgca ggttttcatc ccagtttaag ccaacacctg
     2161 cagccgcctg gcgaatttgt ccagcttcgc gatctttcac cgggctgaac ggaaaattac
     2221 cgactttgta tttgggggcg ggtaaggcgg gaatcgcctg agttttacgc agacgagcaa
     2281 cgaagaagcc ttcgcagtcg taaatttgtg ggaaaacatg caaaaagcct tcttcggtca
     2341 gcgctttgtt tgcaccaggg aagagatcgc caagtggtaa aaactctact gcgtcggggt
     2401 aagtctcttt cagccacagg caaacggctt cgttttcttc ctggtttaag gtacaggtcg
     2461 agtaaaccag cgtaccacca ggacgtaatg catgaaaggc gctgtcgata agctcccgtt
     2521 gtgtagctgc gatttcctga ttgctttctg gtgaccagtt ttttagcgca tcgggatctt
     2581 tacgcaccac gccttcgccg gagcagggag cgtccagcaa aatggcatca aacatttctg
     2641 gcactgccgc accaaacacg cggccatcaa aatgtgtgag cgcaacatta ctgatgccac
     2701 agcggctgat attggcatgt aacactttta cccgactggc ggaaaactca ttggcaagga
     2761 ttgccccttc gttattcatc cgcgcggcaa tttgcgtcgt ttttgagcct ggcgcagcag
     2821 cgacatccat cacccgctgt ggtgcattac cgtcagcaaa caaggcggcg acgggcaaca
     2881 ttgaactggc ttcctgaata taaaacaggc cacttaaatg ctcggcggta ctacccaatg
     2941 gcaatgcatc ttcattgtcg cgttcaatcc agaaaccttc ttcacaccac ggaattggcg
     3001 taagcgtcca gccataagga gcggttaatt gcaggaaatc agcaacggag attttcagcg
     3061 tattaacgcg aatgctgcgg cgcaacgggc gctgacaggc ggcaagaaaa tcatcaaatg
     3121 agagcgtcga aggcatagct tcgcgcattt gtgtcagaaa cgcgtccggg aaataaacgg
     3181 tgtgttgggc cacgagcatg taccactggc aaaaaaacag gcgcgcagtt tagcataaac
     3241 gctccggcgc aggcacgccg gagcagtggg cattatttgg gaagcgcagt tccccattca
     3301 cgccactctt tcggttcact ttcctgcaac aggaagtgtt tgccttcctg ggctttcggt
     3361 gccagtggcg tacccggagg cgtggcgaag gcgatgccgc cacggataaa ctggttaaag
     3421 gtgccggttt tcactacgcc gcccgtcaga ccaaagtcca gactgtaacc cgatgccaac
     3481 cagaagacgg aattgttacg caccaggtgt tgatagcgtt tactgatgcg catcgcaatc
     3541 atcacgcgat ctgacaatgt ccccagcgtc attccggtaa ccgtacctac ttccagacca
     3601 cggaacagca caggcgtacc aatacctaac gaaccggctt ccggtgcttc gacaataatg
     3661 cttaagccat ccaggtaacg cgaatcagta atagtagctt cttgcaactc aaagtcacgg
     3721 cgaggattac cccgacctgg ttcgacattg atatacggct ggaggatagt atctagatgc
     3781 tcaacgcccg tggctgaaat ttgcggtgtg accaccgaga agcgcgtacc gccgcgggcg
     3841 aaggtctgga catactccgg atagagcacc gcctttgcct gtacttcatt gcgcgcggta
     3901 atcagatcca gcgtctggat ttgcccgata tcaataccga gatagcgaat tggcatcccg
     3961 accgccagtt ttccggcatc gaaagcgtga agcgtaatct gcccactaac cgcacgggcc
     4021 gctgtttcgg aagcatacag aattcgtttg tcgcctttac gctgactggc gctggcaccg
     4081 ctgaggttat cgaagctaat ggctcccttt aatgctctgg agagcgggga tgcctgtacg
     4141 gtcaggccac taccattcag ctgaactttc gccccgcctt ctgcccagaa cacgctattg
     4201 ctggtcagaa ggttgcgata ctccggctta atatgcagat cgatatcaaa cgcgttagct
     4261 cgcggacgca cggtaatcac ttcaccaact tcaaatttac ggtacagcac taccgatcct
     4321 gcctgcacat ccggcagcgt ctctgcactc aaactcacgg ttgtggtggg taaatcgcta
     4381 aggctgttct ccagcgcttt ttccagattg gcatacagtg gatagctggc tttcatctca
     4441 cctttatcgc ctggcagaat acgtatcccg ccgttaatcc attctgaggc gctggcacca
     4501 agaaactcaa cgccatccag ccccaccttc acgtcgacac ggctgttgac gacaaatttg
     4561 ctatcgcctt ttaccagttc gcgatgctga ggctcgatgg cgacggtaaa ggtaacgcct
     4621 ttgctggtga gtttacgatc aataacctgg cctacctgca cgccgtgaag aatgagcggc
     4681 tgacccgtat caataccgta actttccggc gcggtcaggg tcagcgtcag aacatcaggt
     4741 tcatgcagca gtgctttttc gcctggcaca acaacgaact ctttgcgtgg ctcgccatcg
     4801 ccgggtacca actcgaaggt tttgccagtc agcagggcgc tgagattggc atcgctaagg
     4861 gataatttcg gattacgtaa ttcgatgcgg gtattttcac gaagcagggt aacgacgctg
     4921 ggatcaactg tcatttcccc agtgacttta ccaccaggat ttaaatccag tttagttagc
     4981 tgtccgactt ccagtccctg atacattaat ggcgtcgagt cggcggttaa tccggcccca
     5041 ctcggcagtt ccagtttgat tattacgcca cgctggctat gggcgaggtc ttcatacaga
     5101 ccaaaggtat cttccgcctc ggcaggtttc gactcttctg gtgaatcgaa ggcaatcgca
     5161 ccgttaacca gtgccgccag gctttccagt ttcaccttcg cgccactgat actgacattg
     5221 gcatcaacgc cggaaacgtt ccagaaacgg ctaccttttt tcaccagatc ggtaaaacgc
     5281 cgctcgatca ggacatcaat caccacgcct tgtttgttgg gattgatggc atagtcgtag
     5341 acttttccca ccgggatctt gcggaaatag accaatgaac cgctgttcag cgaaccgaga
     5401 tcgggggctt gcaggtggat catcagatcg ccattgttca gccgatattt cggttgggta
     5461 tcgagtgcga caaagtgatc ctgctcttta cctgtacccg gcatcatgcc gatatagttc
     5521 ccaccgacga gggcgtccag cccggagaca cctgccaacg atgcttttgg cgtcaccagc
     5581 cagaattgag tctcttcgcg cagcgcatct ttcatatcgg acttgatgct gaccttgact
     5641 tcaatcttac gaagatcgtc gctgaggctg atatcctgca ctgttccgac ttcaacgccc
     5701 tgataacgaa caggcgtacg gcccgggaca ataccatccg ccgacataaa gtcgatggtg
     5761 acggtattac ttcggtcctg ataactgtcc caaatcagcc aaccggcaat cattagcgcg
     5821 atgaaaggca gcagccagaa aggtgagata cggcgtttat ttttaatctg cgcttcagtc
     5881 gtcgaagcgg gcgtttcctg actcatgtgc atcccaaagt aagcggctgt ccagccattc
     5941 cacagcaaga atagtcaaaa ttacggctgc gccaaaataa aacgcagccg gtcccatagt
     6001 aaaagcgagg atctgatcgc gattaatcag cgacatggtt aaagatatga caaacaggtc
     6061 gagcatcgac cagcgtccaa tccaggtcac catccgcagt aacagaatgc gtgtgcgtaa
     6121 accttgctgg catttaaaat gaatgctcaa cagtaaagtg aacatgacga tcactttagt
     6181 aaacggtacc agaatactgg cgataaacac gattccggcg accgcaatgt tgctacttgc
     6241 cagcgacata atcccggaaa gaatcgtatc ttcctgccgg ccaccattca gataaatgat
     6301 agaaataggc aataggttgg ctggtaacaa caaaacgatt gacgctaaca gcgccgccca
     6361 gcatttttgc aaactatgac gacgacgcag gcgtagcggg atatggcaac gcgggcagcg
     6421 accacgctga tcaggatagc cggtaaaatg gcacccaaga cagacacgaa gtttctcgtc
     6481 cctacgcgta gcggggcgct gcggataata tcgctcccac agctcctcaa cattaagatg
     6541 tgacaacgtc accgtcgtta aaatcaccaa cgccacaaaa gagaacaagc cgacacccgc
     6601 ctggatatgg gcataatcct gtacctttat agaagcaacg ccaatgccga ccaggtagat
     6661 atccagcatt acccactctt taagacgctc aagcatcagc agtaccggac gtaaattcat
     6721 tcccagtcgg ttaccaaacc ataaatatgc tatggaggac accagaatga ggggggcacc
     6781 aataacgcag aaaaagacca tcgcccccgt tatcgtatcg ccctgtttgg tcatttgcca
     6841 gatgccttgc atgacgtttg cgtcgatacg aatacctaac agccagatat gcaacagcgg
     6901 ttcgccccag gcaaacggca tcagcaacag catggtgaaa gccattgccg ccaggcgcgt
     6961 tagcgaccag tcgcgcccgt cgcgaatttt tgcctgacag cgcggacaat aggcactctg
     7021 atgagaattt atctcgggca ggctaaacag catgtcacat tgcgggcaac gttggtaatc
     7081 accacgcggc agttcctcgc cgattgacct cactgttatc ttttttgtcg gcgtaatttg
     7141 tggtgtgtta agagccatga cgtgccaaat gtaataagaa ttaacattaa tcttaaccca
     7201 tgatgggaat gatcttgagc attaacgcat ttaatgctta ttttaatagg ctggcagttc
     7261 caggtaagac aaacaagtga ttatataatg aacaaaacag aattttacgc ggatttaaat
     7321 cgcgacttta acgcgctgat ggcgggagaa accagttttc tgacaacgct tgcgaacacc
     7381 agtgcgttgt tatacgagcg tctcactgac gtaaactggg caggttttta tttgcttgag
     7441 gacgatacac tggtactcgg accatttcag ggcaaaattg cctgtgtccg gatacccgtc
     7501 gggcgcgggg tgtgcggcac tgcggttgcc cgcaatcaag tgcagcgtat cgaggatgtt
     7561 cacgcgtttg acgggcatat tgcctgtgat gcggcgagta attctgaaat tgttctgccg
     7621 ctggtggtga aaaatcagat tattggtgtt cttgacatcg atagtaccgt cttcggtcgc
     7681 tttacagacg aggacgagca aggcttacgt cagcttgtgg cacagcttga aaaagtgctt
     7741 gcaacgacgg attacaaaaa attctttgcg agcgtcgcag gataatcaac ggataacgta
     7801 gcatttactg gtagcgtcat tataatgacg cctgttcatg cctgcgcttg ttggctacgt
     7861 ccgttgtaat caggaaattt catggaaaat caacctaagt tgaatagcag taaagaagta
     7921 atcgcgtttc tggccgaacg ttttccccac tgtttcagtg cggaaggtga agcgcgtccg
     7981 ctgaaaatcg gtatttttca ggatttggtc gatcgtgttg ccggggaaat gaacctgagc
     8041 aaaacgcaat tacgatccgc tttacgtctc tacacttcga gctggcgtta tctttacggt
     8101 gttaaacccg gcgcaacgcg tgtcgatctt gacggcaacc catgcggtga gctggacgag
     8161 caacatgtag agcatgctcg caagcagctt gaagaagcga aagcgcgtgt tcaggcacag
     8221 cgtgctgaac agcaggcgaa aaaacgcgaa gctgccgcag ctgctggtga gaaagaagac
     8281 gcaccgcgcc gcgaacgcaa gccacgtccg accacgccac gccgcaaaga aggcgctgaa
     8341 cgtaaacctc gtgcgcaaaa gccggtagag aaagcgccaa aaacagtaaa agcacctcgc
     8401 gaagaacagc acaccccggt ttctgacatt tcagctctga ctgtcggaca agctctgaag
     8461 gtgaaagcgg gtcaaaacgc gatggatgcc accgtattag aaatcaccaa agacggcgtc
     8521 cgcgtccagc tgaattcggg tatgtctttg attgtgcgcg cagaacacct ggtgttctga
     8581 aacggaggcc gggccaggca tgaacatgtt ttttaggctt accgcgttag ctggcctgct
     8641 tgcaatagca ggccagacct tcgctgtaga agatatcacg cgtgctgatc aaattccggt
     8701 attaaaggaa gagacgcagc atgcgacggt aagtgagcgc gtaacgtcgc gcttcacccg
     8761 ttctcattat cgccagttcg acctcgatca ggcattttcg gccaaaatct ttgaccgcta
     8821 cctgaatctg ctcgattaca gccacaacgt gctgctggca agcgatgttg aacagttcgc
     8881 gaaaaagaaa accgagttag gcgatgaact gcgttcaggc aaactcgacg ttttctacga
     8941 tctctacaat ctggcgcaaa agcgccgttt tgagcgttac cagtacgctt tgtcggtact
     9001 ggaaaagccg atggatttca ccggcaacga cacttataac cttgaccgca gcaaagcgcc
     9061 ctggccgaaa aacgaggctg agttgaacgc gctgtgggac agtaaagtca aattcgacga
     9121 gttaagcctg aagctggcag gaaaaacgga taaagaaatt cgtgaaaccc tgacacgccg
     9181 ctacaaattt gccattcgtc gtctggcgca aaccaacagc gaagatgttt tctcgctggc
     9241 aatgacggcg tttgcgcgtg aaatcgaccc gcataccaac tatctttccc cgcgtaatac
     9301 cgaacagttc aacactgaaa tgagtttgtc gctggaaggt attggcgcag tgctgcaaat
     9361 ggatgatgac tacaccgtta tcaattcgat ggtggcaggt ggtccggcag cgaagagtaa
     9421 agctatcagc gttggtgaca aaattgtcgg tgttggtcaa acaggcaagc cgatggttga
     9481 cgtgattggc tggcgtcttg atgatgtggt tgccttaatt aaagggccga agggcagtaa
     9541 agttcgtctg gaaattttac ctgctggtaa agggaccaag acccgcactg taacattgac
     9601 ccgtgaacgt attcgtctcg aagaccgcgc ggttaaaatg tcggtgaaga ccgtcggtaa
     9661 agagaaagtc ggcgtgctgg atattccggg cttctatgtg ggtttgacag acgatgtcaa
     9721 agttcaactg cagaaactgg aaaaacagaa tgtcagcagt gtgatcatcg acctgcgtag
     9781 caatggcggt ggggcgttga ctgaagcggt atcgctctca ggtctgttta ttcctgcggg
     9841 tcccattgtt caggtccgcg ataacaacgg caaggttcgt gaagacagcg ataccgacgg
     9901 gcaggtgttc tataaaggcc cgctggtggt actggttgac cgtttcagtg cttcggcttc
     9961 agaaatcttt gccgcggcaa tgcaggatta cggtcgtgcg ctggttgtgg gtgaaccgac
    10021 gtttggtaaa ggcaccgttc agcaataccg ttcattgaac cgtatttacg atcagatgtt
    10081 acgtcctgaa tggccagcgc tgggttctgt gcagtacacg atccagaaat tctatcgcgt
    10141 taacggcggc agtacgcaac gtaaaggcgt aacgccagac atcatcatgc cgacgggtaa
    10201 tgaagaaacg gaaacgggtg agaaattcga agataacgcg ctgccgtggg atagcattga
    10261 tgccgcgact tatgtgaaat caggcgattt aacggccttt gggccggagc tgctgaagga
    10321 acataatgcg cgtatcgcga aagatcctga gttccagaac atcatgaagg atatcgcgcg
    10381 cttcaacgct atgaaggaca agcgcaatat cgtttctctg aactacgctg tgcgtgagaa
    10441 agagaataat gaagatgatg cgacgcgtct ggcgcgtttg aacgaacgct ttaaacgcga
    10501 aggtaaaccg gagttgaaga agctggatga tctaccgaaa gattaccaag agccggatcc
    10561 ttatctggat gagacggtga atatcgcact cgatctggcg aagcttgaaa aagccagacc
    10621 cgcggaacaa cccgctcccg tcaagtaata tcaatcaggc acaagaaatt gtgcctgatt
    10681 ttttaacagc ggcaagatgc cgtaaatcag atgctacaaa atgtaaagtt gtgtctttct
    10741 ggtgacttac gcactatcca gacttgaaaa tagtcgcgta acccatacga tgtgggtatc
    10801 gcatattgcg ttttgttaaa ctgaggtaaa aagaaaatta tgatgcgaat cgcgctcttc
    10861 ctgctaacga acctggccgt aatggtcgtt ttcgggctgg tactgagcct gacagggata
    10921 cagtcgagca gcgttcaggg gctgatgatc atggccttgc tgttcggttt tggtggttcc
    10981 ttcgtttcgc ttctgatgtc caaatggatg gcattacgat ctgttggcgg ggaagtgatc
    11041 gagcaaccgc gtaacgaaag ggaacgttgg ctggtcaata ctgtagcaac ccaggctcgt
    11101 caggcaggga tcgctatgcc gcaagtggct atctaccatg cgccggacat caacgctttt
    11161 gcaaccggtg cgcgccgtga tgcctctctg gttgctgtca gcaccggttt gctgcagaac
    11221 atgagcccgg atgaagccga ggcggtaatt gctcacgaaa tcagccacat cgccaatggt
    11281 gatatggtca ccatgacgct gattcagggc gtggtgaaca ccttcgttat ctttatttcc
    11341 cgtattctgg cgcagcttgc cgcgggtttt atgggcggaa atcgtgatga aggtgaagag
    11401 agcaacggca acccgctgat ctactttgcg gttgcaacgg ttctggaact ggtgtttggt
    11461 attctggcga gcattatcac catgtggttc tcgcgtcatc gtgaattcca tgctgatgcc
    11521 ggttcggcaa aactggttgg tcgcgagaaa atgattgccg cgctgcagcg cctgaaaacc
    11581 agctatgaac cgcaagaagc aaccagcatg atggctttct gcattaatgg taagtcgaaa
    11641 tcgctcagtg agttgttcat gactcacccg ccgctggata aacgaattga agctctgcgt
    11701 acgggtgaat acctgaagta atatgaagta aatactaaaa agtgcgtcct gatcg
//
LOCUS       DAJVUP010000136        11576 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.136, whole genome shotgun sequence.
ACCESSION   DAJVUP010000136 DAJVUP010000000
VERSION     DAJVUP010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11576
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.136"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..985)
                     /locus_tag="OQQ75_003242"
     CDS             complement(<1..985)
                     /locus_tag="OQQ75_003242"
                     /EC_number="3.4.21.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310582.1"
                     /note="PtrB; oligopeptidase that cleaves peptide bonds
                     following arginine and lysine residues; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
                     /protein_id="HCS1977473.1"
                     /translation="MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQEN
                     SYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQS
                     AFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNL
                     ETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYE
                     EKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLD
                     HYQHRFYLRSNRHGKNFGLYRTRLRDEQQWEELIPPRENIMLEGFTLFTDWL"
     gene            complement(1194..1853)
                     /locus_tag="OQQ75_003243"
     CDS             complement(1194..1853)
                     /locus_tag="OQQ75_003243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HCS1977474.1"
                     /translation="MANWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLV
                     ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT
                     ERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG
                     VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLA
                     E"
     gene            complement(2180..2536)
                     /locus_tag="OQQ75_003244"
     CDS             complement(2180..2536)
                     /locus_tag="OQQ75_003244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310584.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YebF"
                     /protein_id="HCS1977475.1"
                     /translation="MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIA
                     ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY
                     QVSVDCKAGMAEYQRR"
     gene            complement(2603..2897)
                     /gene="yebG"
                     /locus_tag="OQQ75_003245"
                     /pseudo
     CDS             complement(2603..2897)
                     /gene="yebG"
                     /locus_tag="OQQ75_003245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310585.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein YebG"
     gene            3031..4209
                     /gene="purT"
                     /locus_tag="OQQ75_003246"
     CDS             3031..4209
                     /gene="purT"
                     /locus_tag="OQQ75_003246"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HCS1977476.1"
                     /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY
                     ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEERLNVV
                     PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS
                     SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC
                     APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCSDEVI
                     FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN
                     VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG
                     "
     gene            complement(4265..4906)
                     /gene="kdgA"
                     /locus_tag="OQQ75_003247"
                     /gene_synonym="eda"
     CDS             complement(4265..4906)
                     /gene="kdgA"
                     /locus_tag="OQQ75_003247"
                     /gene_synonym="eda"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HCS1977477.1"
                     /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL
                     EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK
                     AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP
                     TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL"
     gene            complement(4943..6754)
                     /gene="edd"
                     /locus_tag="OQQ75_003248"
     CDS             complement(4943..6754)
                     /gene="edd"
                     /locus_tag="OQQ75_003248"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HCS1977478.1"
                     /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN
                     LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG
                     QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG
                     LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP
                     GTCTFYGTANTNQMVVEFMGMQSPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM
                     PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA
                     RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL
                     DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV
                     FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT
                     DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE
                     PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF"
     gene            complement(6989..8464)
                     /gene="zwf"
                     /locus_tag="OQQ75_003249"
     CDS             complement(6989..8464)
                     /gene="zwf"
                     /locus_tag="OQQ75_003249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HCS1977479.1"
                     /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTR
                     IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRL
                     GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN
                     DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG
                     IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR
                     SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY
                     LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG
                     LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD
                     SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE"
     gene            8802..9671
                     /gene="hexR"
                     /locus_tag="OQQ75_003250"
                     /gene_synonym="yebK"
     CDS             8802..9671
                     /gene="hexR"
                     /locus_tag="OQQ75_003250"
                     /gene_synonym="yebK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HCS1977480.1"
                     /translation="MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEA
                     NVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA
                     MATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS
                     DDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLARE
                     ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES
                     RFDKQLLNLSDDR"
     gene            9799..11241
                     /gene="pyk"
                     /locus_tag="OQQ75_003251"
     CDS             9799..11241
                     /gene="pyk"
                     /locus_tag="OQQ75_003251"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HCS1977481.1"
                     /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP
                     EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK
                     GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK
                     GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA
                     KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL
                     NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM
                     ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA
                     LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGY
                     LMSGDLVIVTQGDVMSTVGSTNTTRILTVE"
     gene            complement(11301..11519)
                     /locus_tag="OQQ75_003252"
     CDS             complement(11301..11519)
                     /locus_tag="OQQ75_003252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001499009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977482.1"
                     /translation="MEYQADYYITINDSIKTWVQTQYSKDSGLPMAVIGHSVAEEAGM
                     RRLASYLDLHSGYPCIHFTGGCDYDWIE"
BASE COUNT         2804 a         2982 c         2892 g         2898 t
ORIGIN      
        1 ccagccagtc ggtaaacagc gtaaaccctt ccagcatgat gttttcgcgt ggcggaatta
       61 actcttccca ctgttgctca tcacgcaggc gggtacggta taagccaaag tttttgccgt
      121 ggcggttgga acgcagataa aaccgatgct ggtagtgatc aaggctgtat tcgtgatctt
      181 tgcggcgcgg cagaaaaaca aacggctcgg catcggccat ttccgcgtcc agcaggcgaa
      241 cttcactggt ggtggcgctg gccaaatgaa tgactacata gtgcttcgag gtcgttttat
      301 gcaggctgac gtaataggta tcgtcttttt cttcgtagat cagtttatct tgcgatgctg
      361 gcgtaccgat ggcgtgacgc cagacctgat aaggcagcag cgtcaccgga tgcttgcgaa
      421 catagtagaa agtccaggag tcatttgccc agacaaagct gggttcaacg ttatccagca
      481 gttccgggta ccagttacca gtttccagat tacgaaaacg aatgccgtac tggcgtcggg
      541 aaagaaaatc ttctgccagc gccataatgg tgttatcggg cgtaatcgcc attccgccca
      601 tcgaataaaa ctcactatga gctgcgcgct tattggcatc gagcaatgtt tcccactcat
      661 cccactcttc actgaatgcc gattgacgct ggtagatagc atattcacag cctggttcat
      721 aaatatgccg atagcggtag ccatttttga tgtagggcgc agaaacttct cgttgcggaa
      781 tgcggtcgat gatttccttt aagatgcgat cctgcaaggc ttgttgtgag gccatcaccc
      841 gatgaccgta actattttct tgttgcaggt agtccaggac ttctggctga gaacgcgtat
      901 cgtcccgcag ccagtagtaa ttatcgatgc gcgtatcgcc atgaagcgtc atggcgtggg
      961 gaatgcgggc ggcttttggt agcatgttat tgttctttct ggttgaaaca tcttataagg
     1021 gtggcaaaac tcaccgggga tgcaagcgaa acaggggagt cattgcttag atgatgacag
     1081 gtaatggcgc ggatatcgaa tgttatgcag acagagaaaa tcagcctgtt caaatggctg
     1141 tgcgattctg gatagcccga aatagtcaac ttcaggctat ccagagagcg gaattattcc
     1201 gccaaagtgc gtttttgctg ttcgagatcg cgttcaatgc cgtcacgaac atcctggggg
     1261 attttcagcg cgtcacccag tgcattcagg taactgcgtt ccataaaatg gtcaatatca
     1321 atagccgcgc aactcaggaa atagatttcc agcgcctctt cttcattgcg gaccccggta
     1381 gccaagcgtt gtggatccag cggttgttcg attgcctgct caatgagtac acgcccctgc
     1441 tcttccacgc cggcttcacg caattgctgg tcgattgccg cacgttcttt ggcatcaata
     1501 tgaccatcac ttttagcggc aaagaccagc gcaaggatca aacgttctgt acgctcatcc
     1561 agcggcgtac tttgcgcgcc aaactgcggt tcgtcctgat gcgccgcgcg aattttatct
     1621 ttgtatttat tccacagcac cgtacccgct accgctccgc cgccaaccag taacgcgttg
     1681 gtgccatatt tcgtaagaag tttacgtgct gatttatttg cgaccagcag cccagccagt
     1741 ccgcctaatg cgcctggcac taacagtttg cccaatccct gatccgcaga cgaggagata
     1801 gaagaactgc tttgcccaag cagggattgc agttgattta accagttagc catatttgct
     1861 cctcaataac catttttagt gcctgtagca tagcggatga ggatgtcaga aaatgtatat
     1921 cgagacaaaa gatgcgcaaa taagcggggc ggtaggccgt tattcaaaga aattcgcgcc
     1981 aggtaaggta tttactgtat atcaggtgat aagggtattt taggtgaaag tagtttgtcg
     2041 ttttgagtgg cattgtttga tgctgattgc ccgatgcgac gctgttgcgt cttctcaggc
     2101 ctacgattgt ggtgcgttct ggggcggaca aggcactcgc gccgcatccg ccaacggtca
     2161 atcgaattat cagaagccat taacgccgct gatattccgc cattcccgct ttgcagtcca
     2221 cgctgacctg gtaatgaata tcggcacttt taccacgcac ggttagcggt actgaccatt
     2281 tatcatcttt accctgaatg tcctgcaaac tgacccaagc cacgggatcg gcctgaccga
     2341 caattttttg atcatctgcc caacgcgcca cgcgattttg ttgataatca cgttttacgc
     2401 tcgcggcaat tccggcagca tccagacctt cacactttgg gaaagtgacc gacttgctgg
     2461 tttcattatt ggcagcgaaa actgatgcgc aggcagaaac caacaacagc cctaaaaacg
     2521 cccctctttt tttcatgttt ttctccatag cacaatgatt caggagaaag catggtacaa
     2581 attgtcagga gcgcaagttg cttcaggccg cgtgtgaggc atcttcctct tcggattcag
     2641 caccgacgac ctgtgggtgg ggacggtaat ttgccggttt tcagaatggt gctcagcaca
     2701 tctttttgtt ctgccagcca tagcgaaagg gcttcacgtt gctcgtcttc catttgcact
     2761 ggagaattag tcagccaggt gtcaagcaga tccgccgtat caagcatttt gtcataagca
     2821 tcggcttcct ttttgctggt aaacgacatt ttctcttcgc cctcacgaat gactacgtat
     2881 ttaacttcaa ccgccatttg cagcctctca taataactgt gattttatac agtatatttc
     2941 ttttcggttg agaaatcaaa atcaacaata aagacacacg caaacgtttt cgtttatact
     3001 gcgcgcggaa ttaatcaggg gatattcgtt atgacgttat taggcactgc gctgcgtccg
     3061 gcagcaactc gcgtgatgtt attaggctcc ggtgaactgg gtaaagaagt ggcaatcgag
     3121 tgtcagcgtc tcggcgtaga ggtgattgcc gtcgatcgct atgccgacgc accagccatg
     3181 catgtcgcgc atcgctccca tgtcattaat atgcttgatg gtgatgcatt acgccgtgtg
     3241 gttgaactgg aaaaaccaca ttatatcgtg ccggagatcg aagctattgc caccgatatg
     3301 ctgatccaac ttgaagagga aagactgaat gttgtcccct gcgctcgcgc aacgaaatta
     3361 acgatgaatc gcgagggtat ccgtcgcctg gcggcagaag agctgcagct gcccacttcc
     3421 acttatcgtt ttgccgatag cgaaagcctt ttccgcgagg cggttgctga cattggctat
     3481 ccctgcattg taaaaccggt gatgagctct tccggcaagg ggcagacgtt tattcgttct
     3541 gcagagcaac ttgctcaggc atggaagtac gctcagcaag gcggtcgcgc cggagcgggc
     3601 cgcgtaattg ttgaaggcgt cgttaagttt gacttcgaaa ttaccttgct aaccgtcagc
     3661 gcggtggatg gcgtccattt ctgtgcaccg gtaggtcatc gccaggaaga tggcgactac
     3721 cgtgaatcct ggcaaccaca gcaaatgagc ccgcttgccc ttgaacgtgc gcaggagatt
     3781 gcccgtaaag tggtgctggc actgggcggt tatggtctgt ttggtgtcga gctgtttgtc
     3841 tgtagtgatg aggtgatttt cagtgaggtc tcccctcgtc cacatgatac cgggatggtg
     3901 acgttaattt ctcaagatct ttcagagttt gccctgcatg tacgtgcctt cctcggactt
     3961 ccggttggcg ggatccgtca gtatggtcct gcagcttctg ccgttattct gccacaactg
     4021 accagtcaga atgtcacgtt tgataatgtg cagaatgccg taggcgcaga tttgcagatt
     4081 cgtttatttg gtaagccgga aattgatggc agccgtcgtc tgggtgttgc gctggcgacc
     4141 gctgagagtg ttgttgacgc cattgaacgc gcgaagcacg ccgccggaca ggtaaaagta
     4201 cagggttaaa cccggcaaaa aaacgctaca aaaatgcccg atcgtagatc gggcgttttg
     4261 acttttacag cttagcgcct tctacagctt cacgcgccag cttagtaatg cggtcgtaat
     4321 cgcccgcttc cagcgcatct gccggaacca gccaggaacc accgatgcac agcacgcttt
     4381 tcagcgccag gtagtcacgg tagttagccg gagaaatacc acccgtcggg cagaaacgga
     4441 cctgggagaa cggacccgcg atcgcctgca gggctttcac gccgccgtta gcttcagccg
     4501 ggaagaattt gaactctttc aaaccgtagt ccatacccag catcagttcg gaaacagtgc
     4561 tgatccccgg aattagagga atagtccctt cggtagcagc tttcagcagc ggctcggtca
     4621 gacccgggct aattgcgaac tgtgcacccg cttcagtgac ttctgccagc tgctgtggat
     4681 tcagcaccgt accggcaccc acaatcgctt caggcacttc tttggcgata gcacggatag
     4741 cgtcaactgc acactcggta cgcagagtca cttccagaac gcgcacccca ccagcaacca
     4801 acgcttttgc catcggcact gcgtgttcca gtttttttac cacgataacc ggtacaaccg
     4861 ggccggtggt caggattgat tctgcacttg ttttccagtt tttcatcaga gttttctctc
     4921 gcctgattac aaatttgtcg tcttaaaaag tgatacaggt tgcgccctgt tcggcaccgg
     4981 acagtttttc acgcaaggcg ctgaataatt cacgtcctgt ccccacgcgt gacgcgctca
     5041 ggtcaggaat gtgcggttcg cgagcagcca gttccgcttc gtctaccagc agcgtcagtt
     5101 cgcctgtctg tccattcaca cgaatgatgt ccccgtcgcg cacttttgcc agcagcccgc
     5161 catcgtaggc ttctggtgtt acgtggatag ctgacggcac tttacctgaa gcgccggaga
     5221 gtcgtccatc ggtaactaac gcaattttga aacaccggtc caataataca ccaagtggcg
     5281 gcatgagttt atgtaattct ggcattccgt tcgcttttgg cccctgatga cggacaacaa
     5341 cgacacaatc gcggtccagc aaacccgctt caaaggccgg cataacgtca tgctggcttt
     5401 caaaaacaac cgctggcgct tcaatcacct ggttctcaac cggcacggca gaggttttca
     5461 taaccgcacg gcccaggtta ccgcttaaca cttttgtccc accatgatga gagaaaggtt
     5521 gttcgaagga agcgatcaca ttgctgtcga gtgatttttc cgccccttcc cgccagtcca
     5581 gttcaccatt attcagccat ggttcaaggg tataacgaga cagaccaaag cctgccaccg
     5641 tattgacatc ttcatgcagc aggcctgctt tgagcagttc acgcaccaga accggtacgc
     5701 cacctgccgc ctggaagtgg ttaatatcgg ccggaccgtt cgggtagaga cgtgccatca
     5761 gcggtacaac atcagaaagg tcagagaagt catcccagtt aatctgaata ccggccgcgc
     5821 gcgccatcgc caccaggtgc atggtgtggt tagtggaacc accggtcgcc agcagtgcaa
     5881 cgataccgtt caccaccact ttctcatcga tcatcttacc gatcggcatc cattcattac
     5941 cattaccggt catgcgtgta acctgacgcg cagcggcagc ggtcaaagca tcgcgcagcg
     6001 gagaatccgg atgaacaaaa gaagagcctg gcgactgcat ccccataaat tccaccacca
     6061 tctggttggt gttggcagta ccgtagaaag tacatgttcc cggcgcatgg taagacgcgg
     6121 cttctgactc cagtaaggcc atgcggtcca ctttaccttc ggcataaagc tggcgaatac
     6181 gcactttttc tttatttggc aaaccgcttg ccatcggtcc agacggcaca aacaccgcag
     6241 gcaaatgacc aaacgacagg gctgccatcg tcagacccgg gacaatcttg tcgcacacac
     6301 cgaggaacag agcaccatca aacatgttat gggacagccc caccgccgca gacatcgcta
     6361 tcacttcgcg gcttagcagc gacaattcca ttccatcctg cccctgggtg acaccatcac
     6421 acatcgccgg aacaccgccc gcaacctgac caaccgcatt cgcttcatgc agggctttac
     6481 gaatgatttc tggatagtgt tcataaggct ggtgcgcgga gagcatgtcg ttataggagg
     6541 tgatgatggc gatattgtta cgcaacatgc ttttcaaaga ggctttgtct tctggctggc
     6601 aggcagcgaa accgtgtgcc aggttaccgc atgccaactg cgaacgatga acggtcgacg
     6661 ttttcgcttg ttctatccgg gcgagataag cagagcgagt ctcgcgcgaa cgttcaatga
     6721 ttcgatttgt tacgcgtaac aattgtggat tcataaaggc tcctgaaatt gagttgtcag
     6781 agcaggatga ttcacaacgc gtttcattca gaggatttat gagtgaaacg cctgtaaccg
     6841 gagctcatag ggcaaaaacg tttcagtcag tgtaataaaa aaagcctcgt gggtgaatcc
     6901 gcacgaggcc tgaaagtgta aaaattgttc tacaatctgt gcaagatcat gttaccggta
     6961 aaataaccat aaaggataag cgcagatatt actcaaactc attccaggaa cgaccatcac
     7021 gggtaatcat cgccaccgag gcaacgggtc cccaggttcc ggcctgatac ggtttcggcg
     7081 catcattgtc catcgcccac gcctcagtaa tggagtctac ccatttccag gcttcttcca
     7141 cttcatcacg acgtacaaac agtgcctgaa taccacgcat ggtttccagc agcagacgtt
     7201 cataggcatc cgccagatgc gtctgattaa aggtttctga atagctcaga tccagcttgg
     7261 tgatttgcag gttatgtttg tggtcaaggc caggaacttt attcagtacc tggatatcca
     7321 cgccttcatc aggttgcaga cggatagtca gtttattctg cggcagatcc tgccacgact
     7381 ctttaaacag attcagttca ggtgttttga aatagaccac gacttcagaa catttggtcg
     7441 gcagacgttt accagtacgc aggtagaatg gcacaccggc ccagcgccag ttatcaatgt
     7501 cgacgcggat cgccacgaag gtttctgtat tgctgctctt gttcgcaccc tcttcttcca
     7561 gatatcccgg cacttttttg ccctgggcga agcccgcagt atattgccca cgtacggttt
     7621 tttcgcgtac gttggagcgg tcgatgcggc gcagggactt cagtactttc actttttcat
     7681 cgcggatgct gtctgcgctc aggtcagatg gcggagacat cgcaatcatg cagagaattt
     7741 gtagcaggtg gttctgaatc atgtcacgca tctgaccggc tttatcaaaa tagccccagc
     7801 gcccttcgat ccccacttct tctgccacgg taatctcaac atgatcaatg gtgcgattgt
     7861 cccagttatt cacaaacagg gagttagcaa aacgcagcgc caacaggttc agcaccgttt
     7921 ctttaccaag atagtggtcg atacggtaaa cctggcactc ctcgaagtat tcgccaacct
     7981 gatcattgat ttcctgcgag gtcgccagcg acgtccccag cggtttctcc atgactacgc
     8041 gtgccggttt agcattcagt tttgcctcgc caagcccttt gcaaattgcg ccaaaagtgc
     8101 tgggcggcat ggcaaagtag ttaatggtga tacgattttt ttgatccagc atcgcgccga
     8161 gacggttgaa tgcagcagtg tcattgacat cgagattaca aaaatccaga cgtgcactca
     8221 gggtgtccca taaaccttca tcaatggttt ctttcatgaa agtttcgagc gcctcgcgga
     8281 caactttggt atatgccgct ttatcccagt cagcacgccc tacgccgata atccgggtgt
     8341 ccgggttgag ctgaccggct ttttccagtt gatacaggga aggcagcaat ttacgacgcg
     8401 caaggtcgcc tttcgcgccg aaaatgacca ggtcacaggc ctgggctgtt tgcgttaccg
     8461 ccatgtcatt ctccttaagt taactaaccc ggtacttaag ccagggtata cttgtaattt
     8521 tcttacggtg cactgtactg cttttacgag cttgcgaaaa ctgtaaacgc ttatccaccc
     8581 gtgcgattac gggaaaagcg cgcaaagcgc ggcaaaactg ataaaaaaat catcgttttc
     8641 cattcggtaa aaatctgaca ctgatcatgt tatgaaaaaa aataacaact tttttatctg
     8701 cttttgtcat taacacggca cacaggcgta atatctgaca aaactgcatt tcgatttctt
     8761 tcagtgcgga aatcgtcatt acccgtgagt ctctttacat catgaatatg ctggaaaaaa
     8821 tccagtctca gctggaacat ttgagcaaat cagagcgcaa agttgccgag gtcattctgg
     8881 cttcgcccga taacgcgatc cattcgagta ttgctgctat ggcactggaa gccaatgtta
     8941 gcgaaccgac ggtgaatcgt ttctgtcgca gcatggacac gcgcggtttt cctgatttta
     9001 aacttcatct ggcacagagt ctggcgaatg gcactcccta tgttaatcgc aatgtcaatg
     9061 aagatgacag cgttgaatca tacacaggga aaatatttga gtccgcaatg gcaacgcttg
     9121 atcatgtccg tcattcactg gataaatctg ccatcaaccg cgccgtcgac ttgctcactc
     9181 aggcaaaaaa aatcgccttt ttcggattag gctcttcagc cgccgttgcc cacgatgcga
     9241 tgaataagtt ctttcgtttt aatgttccgg tggtgtactc cgatgatatc gtgctgcaac
     9301 gcatgagttg tatgaattgt agcgacggag acgtggtggt gctgatttct cacactggaa
     9361 gaacaaaaaa tctggtcgag ctggcgcagc tggctcgcga aaacgacgca atggtgattg
     9421 ccctcacctc tgcgggtacc ccgctcgccc gggaagcaac gctggcaatt accctcgacg
     9481 taccggaaga tactgacatt tatatgccca tggtttctcg acttgcacag ctgaccgtga
     9541 tagatgtgct ggcgacagga tttactttgc gacgcggtgc aaaattcaga gataacttga
     9601 agcgggtcaa ggaagcgctg aaggaatcgc gttttgataa gcagttactt aatttaagtg
     9661 acgatcgcta aaaacgactg tcactgtcct aatcttatac gacatccgaa tgagattaat
     9721 ttatcgccat cgcggcgtta tttcattcgg atttcatgtt caagcaacac ctggttgttt
     9781 cagtcaacgg agtattacat gtccagaagg cttcgcagaa caaaaatcgt taccacgtta
     9841 ggcccagcaa cagatcgcga taataatctt gaaaaagtta tcgcggcggg tgccaacgtt
     9901 gtacgtatga acttttctca cggctcgcct gaagatcaca aaatgcgcgc ggataaagtt
     9961 cgtgagattg ccgcaaaact ggggcgtcat gtggctattc tgggtgacct ccaggggccc
    10021 aaaatccgtg tatccacctt taaagaaggc aaagttttcc tcaatattgg ggataaattc
    10081 ctgctcgacg ccaacctggg taaaggtgaa ggcgacaaag aaaaagtcgg tatcgactac
    10141 aaaggcctgc ctgctgacgt cgtgcctggt gacatcctgc tgctggacga tggtcgcgtc
    10201 cagttaaaag tactggaagt tcagggcatg aaagtgttca ccgaagtcac cgtcggtggt
    10261 cccctctcca acaataaagg tatcaacaaa cttggcggcg gtttgtcggc tgaagcgctg
    10321 accgaaaaag acaaagcaga cattaagact gcggcgttga ttggcgtaga ttacctggct
    10381 gtctccttcc cacgctgtgg cgaagatctg aactatgccc gtcgcctggc acgcgatgca
    10441 ggatgtgatg cgaaaattgt tgccaaggtt gaacgtgcgg aagccgtttg cagccaggat
    10501 gcaatggatg acatcatcct cgcctctgac gtggtaatgg ttgcacgtgg cgacctcggt
    10561 gtggaaattg gcgacccgga actggtcggc attcagaaag cgttgatccg tcgtgcgcgt
    10621 cagctaaacc gagcggtaat cacggcgacc cagatgatgg agtcaatgat tactaacccg
    10681 atgccgacgc gtgcagaagt catggacgta gcaaacgccg ttctggatgg tactgacgct
    10741 gtgatgctgt ctgcagaaac tgccgcaggg cagtatccgt cagaaactgt tgcagccatg
    10801 gcgcgcgttt gcctgggtgc ggaaaaaatc ccgagcatca acgtttctaa acaccgtctg
    10861 gacgttcagt tcgacaatgt ggaagaagct attgccatgt cagcaatgta cgcagctaac
    10921 cacctgaaag gcgttacggc gattattacc atgaccgaat cgggtcgtac cgcgctgatg
    10981 acctcccgta tcagctctgg tctaccaatt ttcgccatgt cgcgccatga acgtacgctg
    11041 aacctgactg ctctctatcg tggcgttacg ccggtgcact ttgatagcgc taatgacggc
    11101 gtagcagctg ccagcgaagc ggttaatctg ctgcgcgata aaggttactt gatgtctggt
    11161 gacctggtga ttgtcaccca gggcgacgtg atgagtaccg tgggttctac taataccacg
    11221 cgtattttaa cggtagagta atctcacctg ccccggccgc tgatggccgg ggtatttagc
    11281 aacacataaa ttaggactac ttattcaatc caatcataat cacagccccc tgtaaaatga
    11341 atacagggat agcctgaatg gagatctaaa tagcttgcaa gacgtcgcat acccgcttcc
    11401 tctgcaacac tatgtccaat aactgccatc ggtaagccac tatctttgga gtattgtgtc
    11461 tgcacccatg ttttaattga atcgttaatc gtaatataat aatcagcctg atattccata
    11521 tattgtattg gatcacaaaa acagcctgcc ccaatgccaa cagttctgac tactct
//
LOCUS       DAJVUP010000137        11514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.137, whole genome shotgun sequence.
ACCESSION   DAJVUP010000137 DAJVUP010000000
VERSION     DAJVUP010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.137"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            101..307
                     /locus_tag="OQQ75_003253"
     CDS             101..307
                     /locus_tag="OQQ75_003253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000387479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HCS1977483.1"
                     /translation="MEAIRKIIFRQEVKKIIHIKADSTLQSMINAGEFPQGFRVGLRR
                     RGWYEDDVLAWQKEREQEARGTAA"
     gene            322..987
                     /locus_tag="OQQ75_003254"
     CDS             322..987
                     /locus_tag="OQQ75_003254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001329530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977484.1"
                     /translation="MTNTKKAAPIWSRLSEQLTRCALCVYDPKHKHGDDSRYQAGGQC
                     NQSGSVRCHTCNERFSLYSLRNCSRAKAHGANLSDSCSIFLRRLFRAGDNVLVNSLSV
                     IVLSCIAMRRNTSHHGADSFYPLGSMPRRFSSVRPNSLSQLARLMPSLCASLSNCSFS
                     SGEIRILNCGDCPSPLGLLSRLIIDKWSPIELAFPLLGGHLNTRALKKAKPRKCHYHS
                     QGF"
     gene            1013..1213
                     /locus_tag="OQQ75_003255"
     CDS             1013..1213
                     /locus_tag="OQQ75_003255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000226783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS1977485.1"
                     /translation="MVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARS
                     RCPSGCVAVFAARIRQGETYAQ"
     gene            1203..1424
                     /locus_tag="OQQ75_003256"
     CDS             1203..1424
                     /locus_tag="OQQ75_003256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001372127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977486.1"
                     /translation="MHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFAL
                     ECIRYIATRSLNDAKNILVADCENGGGYA"
     gene            1417..1650
                     /locus_tag="OQQ75_003257"
     CDS             1417..1650
                     /locus_tag="OQQ75_003257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977487.1"
                     /translation="MRDDRFNSLKQEFPGVPDDAADALSSMPELIRAAFFLLSTREYK
                     STGLDVLNIAADYAEYVAEARYRRKFPEDVSHA"
     gene            1643..1876
                     /locus_tag="OQQ75_003258"
     CDS             1643..1876
                     /locus_tag="OQQ75_003258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977488.1"
                     /translation="MRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSR
                     IATALITLLEPVIMELQEIDLLHDRYKEQHTGE"
     gene            1882..2181
                     /locus_tag="OQQ75_003259"
     CDS             1882..2181
                     /locus_tag="OQQ75_003259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HCS1977489.1"
                     /translation="MKLKYSGLTASGNTHPKFTRGDIYRDQYGGTVMIKGVEERRVTY
                     RREGYEYDCVMPVYQFRRDFSLVQTAPHNVPTSNARARANIQKLKTMINGFRGKK"
     gene            2178..3578
                     /locus_tag="OQQ75_003260"
     CDS             2178..3578
                     /locus_tag="OQQ75_003260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1977490.1"
                     /translation="MKSAPNLKKQPYDKMTEVIIFAGSDAWAHAKQWQEQDGRLAGDN
                     VPPVVLADDQLDELADLRIIDEGRYCVRLYKAGHIRPSNINAIAHKLAAAGVTDANYY
                     PEGMHSHMRENWREYLERVRGKEPVEEKNHQRKTTLPMSVGSTGYDTQLDYVVKGIIP
                     AVSLCSIYGASGSYKSFLAGSWACHVATGRQWGGRRVAHGAVLYVVGEGGIGVPRRVK
                     AWEVVHDEQVKNLYLVNRPIFPAAPLDVDEMVIAARQVERETGKPVRMIILDTLARCF
                     GGNDENDSRDMGAFIRGCDELKRRTGATVLVVHHSGKDETKGARGSSAFRASLDAEYR
                     IRREDAGSKALVISCTKMKDAEELKEAAYDLRVVELFTDADGELITSLVVVDDPRPPV
                     ELERIEEAGNKTENHTALWGCIRSRTQNGDKCTIPLLRDDMKKLGYEMKNFRRWLYKL
                     EKDGVISIDGDDVAPL"
     gene            3779..4030
                     /locus_tag="OQQ75_003261"
     CDS             3779..4030
                     /locus_tag="OQQ75_003261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977491.1"
                     /translation="MTQKRRDRTEPKYKALDMTEHTLKVAIRTIDRHTREGYAKEHPD
                     LISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEVEL"
     gene            4027..4437
                     /locus_tag="OQQ75_003262"
     CDS             4027..4437
                     /locus_tag="OQQ75_003262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS1977492.1"
                     /translation="MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQ
                     ATLWLSVIAFGKQADFLAKHQKGDVASVSGTMQVSQWTGQNGETRQGWQVIADSVISA
                     RAARPGGNRRKTTGTQGNQPPAGGDDPYGDDISF"
     gene            4448..4720
                     /locus_tag="OQQ75_003263"
     CDS             4448..4720
                     /locus_tag="OQQ75_003263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
                     /protein_id="HCS1977493.1"
                     /translation="MVHDRIAEELEAKGFYRRAAARWGEVMQLVETDKERHHITMRRL
                     ECSRKAQRAPEPPDNFGDLKKAVDRTYAEMGIDGAGDEIWRNYQDS"
     gene            4846..5070
                     /locus_tag="OQQ75_003264"
     CDS             4846..5070
                     /locus_tag="OQQ75_003264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309616.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977494.1"
                     /translation="MPMKFDEILKQRDKYHADNMETMSINDYRAFLETGALIEKDQHG
                     FVRCALSGEMLAVNPEQIDALIEFLKEIRD"
     gene            5322..5528
                     /locus_tag="OQQ75_003265"
     CDS             5322..5528
                     /locus_tag="OQQ75_003265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000796968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977495.1"
                     /translation="MAEEKKGGVSVYISPEIVEVLKQRHKKNYEAGVAAGLDPLMTPE
                     PSIGSLVRSYLLAALGMHKNYGGE"
     gene            5528..6583
                     /locus_tag="OQQ75_003266"
     CDS             5528..6583
                     /locus_tag="OQQ75_003266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HCS1977496.1"
                     /translation="MAGKATALNTNQLFMYLNRGDIADFKFSPLFTTLFFPNVATFST
                     QNIMLDTLDIEEVTMSAFCSPMVGSQVQRDKGYETSTIKPGYMKPKHEIDPTKTIMRM
                     AGEDPAQLNDPTYRRMRLITGNMRRQINAIKARVEWLAVNAVTTGKNIIEGEGIERYE
                     IDWKIPEKNIIEQSDGKKWSEHDKDIYDPIYDIELYADQAGCPANVMIMGAEVWRTLR
                     SFKKFRELYDLSRGSESAAEMACKNLGEVVSFKGYLGDIALIVYSGKYTDSDGTEKYF
                     LEPDLLVLGNTNNKGLVAYGAIMDQEAVRTGATQNMYYPKNWIEDGDPAIEYVQTHSA
                     PQPVPADIRKFVTVKIG"
     gene            6620..6898
                     /locus_tag="OQQ75_003267"
     CDS             6620..6898
                     /locus_tag="OQQ75_003267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004977729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS1977497.1"
                     /translation="MQAVSRYQRHWYILPLMLVDNGEFKPWDGQESGKAVYLTSYLVD
                     TSKQKSAQCYKTGIFNIAAVNWPESVDTDAKKCAAFAGSGVSVQPLAR"
     gene            6911..7324
                     /locus_tag="OQQ75_003268"
     CDS             6911..7324
                     /locus_tag="OQQ75_003268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HCS1977498.1"
                     /translation="MATNESIMALPLASKFKAEARAMADRGLSTYEAVYQLNKLEEQD
                     KPRADAIMALHEHKDYQPLLRAMANVPCIDVDTAKNILNMTIEQERPKVAPELTAAFE
                     NFMDMHSPQTVSAGMAYDGRNPGDDGDIDRILKTI"
     gene            7486..7920
                     /locus_tag="OQQ75_003269"
     CDS             7486..7920
                     /locus_tag="OQQ75_003269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977499.1"
                     /translation="MIDKACFVSQQEIAEHFKVNRTTIRAWTKQGMPYLNADRGKSGG
                     YHIGHTLLWSSGKSRLEAIRYHVETSALEKIMFARLLSSERDEYSSEETEHRFDEGLQ
                     IYGYSPEDVSKARNKMAGFLAGWRHAVSVRRASMEQSADTEQ"
     gene            8201..8482
                     /locus_tag="OQQ75_003270"
     CDS             8201..8482
                     /locus_tag="OQQ75_003270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977500.1"
                     /translation="MTEAEILGLIRRAGGISQQTDEQATQPDSVTAENYARVVAEVMR
                     RDGIQLNDVDMRNIRIRVLEMLAYNRRVALYRETEKITYHWKKPERLRR"
     gene            complement(9157..>11514)
                     /gene="yejO"
                     /locus_tag="OQQ75_003271"
     CDS             complement(9157..>11514)
                     /gene="yejO"
                     /locus_tag="OQQ75_003271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311108.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter YejO"
                     /protein_id="HCS1977501.1"
                     /translation="NGGYQYIEMNGTAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVY
                     GAANDPTIKGGRLIVEKDGITVLAAIEKGGLLEVKEGGLAIAVDQKAGGAIKASTRVM
                     EAFGINRLGQFEIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTATG
                     VDKKAGGKLIVSTNALEVSGTNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTIL
                     DEHATMQSLGKDTGTKVQANAVYDLGRSDQNGSITYSSKAISENMVINNGRANVWAGT
                     MVNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSV
                     WAIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGN
                     GNFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTL
                     GNAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTV
                     RERLGSVKSVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTI
                     RGLFFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKM
                     SNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADV
                     GNTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNHVKVNDDGKFNNDVAG
                     TPGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF"
BASE COUNT         3137 a         2753 c         2914 g         2710 t
ORIGIN      
        1 ggtgtatacc gtttaaaaac ggtgggaact gtttttaccc atatccgatg atttaccgta
       61 tttgtcaccg gaatacaccg gattcacaag gtaaatcacg atggaagcaa tcagaaaaat
      121 tatctttcgc caggaagtaa aaaaaattat ccacatcaag gcagacagca cgctgcaaag
      181 catgatcaac gccggagaat ttccgcaggg ttttcgcgtt ggtttacgcc gtcgcggatg
      241 gtatgaggat gatgtgttgg cctggcagaa agaacgcgaa caggaagcac gcggaacggc
      301 tgcttaacgg gtatcacaga tatgacaaac acgaaaaaag cggccccgat atggagccgc
      361 ctttctgaac aattaacccg ctgcgcctta tgtgtatatg atcccaaaca taagcacggg
      421 gatgatagcc gctatcaggc tggtgggcaa tgcaatcagt ctggttcagt tcgttgccat
      481 acctgcaatg agcgcttttc cctatactct ttaaggaatt gctcaagggc aaaagcacat
      541 ggtgcgaatc tttctgattc atgctctatc tttctgcgcc gtcttttccg tgccggtgat
      601 aatgttttgg tcaattcttt atcggtcatt gtgttgtcct gcatagcaat gcgccgtaat
      661 acctcacacc acggcgctga tagtttttat cctttgggtt ctatgccgcg ccgctttagt
      721 tcagtgcgcc ccaactcttt aagccagttg gctaggctta tgccgtcgct ctgtgcttct
      781 ttgtcgaatt gctcttttag ctctggagaa attcgcattc tgaattgtgg ggattgcccg
      841 tcccctttag ggcttttatc gcgtttgatt attgacaagt ggtcacctat tgaattagcc
      901 tttccattgt taggtggcca ccttaacaca agagcactta aaaaagcaaa gccccgcaag
      961 tgtcattacc actcgcaggg cttctaacca acaacgtaaa ctaggagccg ttatggttgc
     1021 cgtaaatcat ataccacacc ttgtacacac acaaacggcc tttgtgtggc gttttctggc
     1081 cctgagtgcc ggagaatctc aaatcatcca cgtaaccgcc tggacggaac gcgaagcgcg
     1141 tagccgttgc ccgtccggtt gtgttgctgt attcgccgcc cgtattcgtc agggggaaac
     1201 ctatgcacaa taaaaccaca ccgaacgcag cagccgccgc actcactacg ctgatgcacg
     1261 cgcttattga tattgaatgc actgcagagc ttgcgcaggg agaagaacag aaagaccgga
     1321 cacagttcgc cctggaatgt atccgataca tcgcaacgcg gtcgctgaat gacgctaaaa
     1381 atattcttgt tgctgattgt gaaaatgggg ggggttatgc gtgatgatcg ttttaattcc
     1441 ctgaaacagg aatttcccgg cgttcctgat gatgcggctg atgcgctttc gtcaatgcca
     1501 gaacttatta gagcggcttt tttcttactt tccacgagag aatataaatc aacggggctt
     1561 gatgtactga atatcgccgc cgattatgcg gaatatgtgg cagaggcgcg ttacagaaga
     1621 aaatttcctg aggatgtaag ccatgcgtga tatttaccac gaaacaatag accgcgcatt
     1681 tcttgcactt tctcacagtg aaaacatgct ggaaatattg cgcatatggc ttgaaacact
     1741 tggcgacaat gaacgcgaca aacaaaaatc aagaattgcc acggcattaa taacgcttct
     1801 tgagcctgta ataatggaac tgcaagaaat agatctattg cacgacagat ataaagaaca
     1861 gcacaccgga gaataaaaat aatgaaactt aaatattctg gcttaactgc cagtggcaac
     1921 actcacccta aatttacgcg cggtgatatt taccgcgacc agtacggcgg cacggtaatg
     1981 attaagggcg tggaagaacg gcgtgtaacc taccgccgtg aaggttacga atatgattgc
     2041 gtgatgcctg tttatcagtt ccggcgtgat ttttctctgg tacagaccgc gccgcataac
     2101 gtgcccacca gcaacgccag ggcacgggca aacatccaga agctgaaaac catgattaac
     2161 ggattcaggg gcaagaaatg aaaagcgcac cgaacttaaa aaaacagcct tacgacaaga
     2221 tgaccgaagt cattattttt gcgggtagtg atgcctgggc acatgcaaaa cagtggcagg
     2281 aacaggacgg gcgactggct ggcgataatg tgcctcccgt tgtgctggct gatgatcaac
     2341 tggatgaact ggcagacctg agaatcatcg acgaggggcg ctattgtgtc cggctgtaca
     2401 aggcaggcca catcaggcca tcaaatatta atgccattgc gcacaagctg gcggcggcgg
     2461 gtgtaactga tgcgaattat taccccgaag ggatgcacag ccatatgcgg gagaactggc
     2521 gcgaatacct ggaacgggtg cgcgggaaag agccggtgga agaaaaaaac caccagcgaa
     2581 aaaccacgct accgatgagc gttggatcta ccggatacga cacgcaactg gattacgtgg
     2641 ttaaggggat tattccggcg gtatcgctat gcagcatata cggggctagc gggtcctata
     2701 aatcattcct tgccggatcg tgggcgtgcc atgttgccac tggtcgccag tggggaggcc
     2761 gcagggttgc acatggtgcg gttctctatg tggttggtga aggcggtatc ggcgttccgc
     2821 gtcgtgtaaa agcctgggag gttgtgcacg atgagcaggt gaaaaatctg tatctggtaa
     2881 accgccccat ctttccggct gccccgcttg atgttgatga aatggttatc gctgcccgtc
     2941 aggtggagcg ggaaacgggt aaacctgtac gcatgattat tctggatacg ctggcgcgtt
     3001 gctttggtgg gaatgatgaa aatgattccc gtgatatggg ggcgtttatc cgtggttgtg
     3061 acgaactgaa acgacgcaca ggggccacgg tgctggtggt tcaccattcc ggcaaggatg
     3121 agacgaaagg cgcgcgcggt tccagtgcat ttcgtgcttc gctggatgct gaataccgga
     3181 tacgcaggga ggacgcagga agcaaagcgc tggttatctc atgcaccaaa atgaaggacg
     3241 cggaggaact caaagaagcc gcatatgact tacgcgtggt ggagcttttt accgacgctg
     3301 acggtgaatt aatcacgtcg ctggtggtgg tggatgatcc gcgccctcct gttgaactgg
     3361 agcgcatcga ggaggcaggg aacaagacgg aaaaccatac cgcgctatgg gggtgcatcc
     3421 gttcacgcac acagaacggc gacaagtgca cgatcccgct gttacgtgat gacatgaaaa
     3481 agctggggta tgaaatgaaa aacttccggc gctggctgta caagctggaa aaagatgggg
     3541 ttattagtat cgatggggat gatgtagcgc cgctataaaa gtgaggagca aaagcgaggg
     3601 ggatagaaag agggccaaaa ttagcccgct ctccctcact tttcgacctg tatacatcct
     3661 caaaagtgag gggtaaaaaa atacttataa aacacacaca tagaaaaacc gaaaatccca
     3721 actgcgacga agtgagacgc ttgaaaaagt gaggcgaaaa agtgagaggt tgcgagaaat
     3781 gacccaaaaa cgcagagaca gaacagagcc aaaatataaa gcgttagaca tgactgagca
     3841 caccttaaag gtggcaatca gaacgataga ccgccacacg cgggaaggat acgcgaagga
     3901 acatcccgac ctgataagcg cattcatgac cacggcggcg gcaaactttg ccacgctgac
     3961 agaacgggag attgccgaag cggaacaggt aacaaccatc aacgttaaaa ccggagaggt
     4021 ggaattatga cggcacagat agccgcttac gggcggctgg tggacgaccc gcaggtaaaa
     4081 cagaccagca agggcacacc gatgacgctg gcgcgtatgg cggtatcttt gccatgcagc
     4141 caggcacagg acggacaggc gacgttatgg ttatcggtca tcgcatttgg caaacaggcc
     4201 gacttcctgg ctaaacatca aaaaggcgat gttgccagcg tatccggcac gatgcaggta
     4261 agccagtgga ccggacagaa cggagaaacg cggcagggct ggcaggttat cgcagacagc
     4321 gtaatcagtg cccgcgcggc acgtccaggc gggaacagac gcaaaaccac aggcacacag
     4381 ggtaatcagc caccagcggg aggcgatgac ccttacggtg atgatatttc gttctgaggg
     4441 ggtgacgatg gtacatgacc gcatagcgga ggaactggag gcgaaaggct tttaccggag
     4501 ggcggcggcg cgatggggtg aagtcatgca gctggtggag acagacaagg aacggcatca
     4561 catcacgatg cgacggctgg aatgttcaag gaaggcacag agggcaccgg agccgccgga
     4621 taatttcgga gacctgaaaa aggcagtcga tcgcacttat gccgaaatgg gtatagatgg
     4681 tgctggtgat gaaatatggc gcaattacca ggacagctaa tcaaacagcc ggagaaatcc
     4741 ggcttttttg caccagttga aacggtatgg cgcattaccg ggttttcgtc acggtcaggc
     4801 atagttacta tctgaaacaa acagacacaa cagaggaaaa aaacaatgcc gatgaaattt
     4861 gatgagatat taaaacagcg tgataaatac catgctgaca acatggagac gatgagcatc
     4921 aatgattacc gcgcattcct ggagacgggc gcactgattg aaaaggatca gcatggtttt
     4981 gtgagatgtg ctctatccgg tgaaatgctg gcggtaaatc ctgaacagat agatgcattg
     5041 atagaatttc tgaaagagat cagagactga tccagcacac agcacacata gccggagcaa
     5101 tccggctttt ttgcgcccaa aaaaagcccg ataaggtcag agggttctta tcgggctttt
     5161 gcatatgagg tttttggatg cactggcgtt cgtgatcggg ataatcattt cataatttgc
     5221 aacataactc aatattattg cataaaatgc aattctgatt ataatcagga ctggataaac
     5281 atccagttat gattttttta gtcgaagagg aatttcttac tatggctgaa gagaaaaaag
     5341 gcggtgtttc ggtgtacata agccccgaaa tcgtggaggt gctcaagcag cgccacaaaa
     5401 aaaactatga ggctggcgtg gcggctggac tggatccgct gatgacgccg gagccgtcga
     5461 taggttcact tgtacgctct tatttacttg cggcgcttgg gatgcataaa aattatgggg
     5521 gtgaataatg gcaggcaaag caacggcact taacactaac cagcttttta tgtacctgaa
     5581 tcgcggggat attgcggatt ttaaattcag ccctctgttt accacgctgt ttttcccgaa
     5641 cgtggcgaca ttcagcacgc aaaacatcat gctggatacc ctggacattg aagaagtcac
     5701 catgtcggcg ttttgttcgc ctatggtggg tagccaggtt cagcgcgata aagggtacga
     5761 aaccagcaca atcaaacctg gctacatgaa gccaaagcac gaaatcgatc caacgaaaac
     5821 catcatgcgc atggctggag aagatccggc acagcttaac gaccctacct atcgccgtat
     5881 gcgcctgatt actggcaaca tgcgccgcca gataaacgcc attaaggcac gcgtggaatg
     5941 gctggcggtg aatgcggtaa cgaccggaaa aaacatcatt gagggcgaag gcatagaacg
     6001 ctatgaaatc gactggaaga taccggaaaa aaacatcata gagcagtccg acggcaaaaa
     6061 atggtccgag catgataaag atatttacga tccaatctat gacatcgaac tatacgcaga
     6121 tcaggcaggt tgccccgcca acgtcatgat tatgggcgct gaggtatggc gcacgttacg
     6181 cagctttaaa aaattccgtg aactgtacga tctttcccgt ggttcagaat ccgccgcaga
     6241 aatggcctgt aaaaacctgg gcgaagtggt gagctttaaa ggctatctgg gcgatattgc
     6301 tcttattgtc tattccggca aatacactga cagcgacggc accgaaaaat atttccttga
     6361 gcctgatttg ctggtcctgg gcaacaccaa caataaaggg ctggtggcct atggtgcgat
     6421 tatggatcag gaagcggtaa gaacgggcgc aacgcaaaac atgtactacc cgaaaaactg
     6481 gattgaggac ggcgatccgg cgattgagta cgtgcagaca cacagcgcac cgcagccggt
     6541 tccggcagat attcgcaaat ttgttaccgt caaaattggt taacggggga ttatatggac
     6601 actccatata ttgagttatt tgcaggcagt cagcaggtat caacgacact ggtacatttt
     6661 gccgctgatg ctggtggaca atggcgagtt taagccgtgg gatggtcagg aatctggcaa
     6721 ggctgtttat ctgacttcgt acctcgtgga cacgtcaaag cagaaatcag cacagtgtta
     6781 caagacgggg atattcaata ttgccgccgt taactggcct gagagcgtcg acaccgatgc
     6841 gaaaaaatgc gccgcctttg cgggttctgg cgtatccgtt cagccgctgg cccgataagc
     6901 agggggaacg atggcaacga atgaaagcat catggcgcta ccgctggcga gtaaatttaa
     6961 agccgaagcg cgggcaatgg ctgacagagg tttatcaacc tacgaggccg tatatcaact
     7021 caacaaactg gaagagcagg acaagccgcg cgctgatgcg attatggcgc ttcatgagca
     7081 taaagactat cagccgctgt tgcgtgcaat ggcaaacgtg ccttgtatcg atgttgatac
     7141 ggctaaaaac atcctgaaca tgaccataga gcaggaacgc ccgaaggttg caccagagct
     7201 taccgcagcc tttgaaaact ttatggacat gcacagccca caaaccgtat cagctggcat
     7261 ggcatacgat ggcagaaacc caggcgatga cggcgacatc gatcgcatac tgaaaaccat
     7321 ctgagacaag gccggagaaa tccggctttt ttgcgggtcc ttcctggaat tatggcccgt
     7381 tacggggcgg cgacctcgcg ggttttcgct atttatgacg tttttccgtg aaggtgacac
     7441 caccaccact tgattaatat ttaaccatgc agttaaggta acattatgat tgataaagct
     7501 tgttttgtaa gtcagcagga aatagctgaa catttcaagg ttaacagaac cactattcgc
     7561 gcatggacca aacaggggat gccgtatctt aatgcggatc gcggaaagtc tggcggttat
     7621 cacatcgggc atacattgct ttggtcttca ggtaaaagcc gtcttgaggc catcagatat
     7681 cacgtagaaa ccagtgcgct ggaaaaaatt atgtttgcca ggctgctttc atctgagcgt
     7741 gacgagtact ccagtgaaga aacagaacat cgatttgatg aaggtttgca gatttacggc
     7801 tattcaccgg aagatgtgag caaggcacga aataaaatgg ctggctttct ggctgggtgg
     7861 cgtcatgccg taagcgttcg ccgtgccagc atggagcaat cagccgatac agaacagtaa
     7921 agccgataac ttgttaatca ctcgcagcaa tgcatgtgat ttgtgcacac tttcggttaa
     7981 ctggttcgat gtccggtttt agtgtctgtt ttttgcgcat gtccggttca tggaaagcat
     8041 gtttttatat ttttcatatg gttaacttgt agagaaaccg gacatggatc ccgaaaaatt
     8101 ttcataaata gtgaaaacgc gcgaggtcgc cgccccgtaa cgggtccata attccaggaa
     8161 ggacccgacg acaccagaca atcagaacga taggtgcaca atgacagaag ccgaaatact
     8221 gggattaatc cgccgtgctg gtggaatcag ccagcagact gacgaacagg ccacgcagcc
     8281 ggacagcgtg acagccgaaa attatgcgcg tgttgttgct gaggtgatgc gccgtgatgg
     8341 tatccagctt aatgatgtgg atatgcgcaa catacggatc cgcgttcttg aaatgctggc
     8401 ctacaatcgc cgcgtggcac tgtatcggga aacggagaaa attacatacc actggaagaa
     8461 gccggagcgg ttgcggcggt aactggttga tattttcgaa attcgccagc ggcgaacatc
     8521 ggggaaacca gcctaacccg ttgatatttt cgggaacctc aaattgagga ggtcggaaac
     8581 ataacccgtc atattctgga tgctgataat taccacgcag cccattaagg cctaacccgt
     8641 tgattctttc ggaaacagcc attggcgtaa tccggcgcgg taacttgctg aacttaaagc
     8701 aaagcgcaaa attgcgctgg ctggtgggca tgatgccgat atggtgatcc ccataacgga
     8761 aatatccacc agcacggcaa cggcagaata gccacaacac agaaaaacca cgaatatggg
     8821 gtttttgtta tggcatgggc atgatgaccg cccctgctct gaatggtgga aatcaccacg
     8881 cagatcatcc accagcttcg tttttataaa ttaaacatcc gggaaaatcc gaccctgaat
     8941 tgtgcatttt ttcagcaaat cattttagtt atacgtttgg ttatacggtt taaaagttga
     9001 atcatataca ttattttaaa tcatgaagtt acacgctcaa ttaaactact ctcgtgaatc
     9061 ccaagaaaaa accaaccttt acggttggtt tttttatatc tgcaattaat ttgataaaca
     9121 gaccgtgaca catcacagcc tgtttatttt ctgttatcag aacgtccaga ccactcccgc
     9181 ctgagtattc cacggcgatt ctacccctgc gccattgcca tagctgactg acaaatgacc
     9241 gcttaacgtc ggggtaaacg atgaccttat cccagcctga taaacgccag gggttccagc
     9301 cacatcatta ttaaatttgc catcgtcatt aactttcaca tggttagaat cggcgtattc
     9361 ctgacgtacg gcggctttca gccagggttc cagcgtcgta ccattttgca ggtccatgtg
     9421 atagcttacc gccgttcccg cttcagcgcg taatatccgg gtatttccca catcagcgcg
     9481 catgccgttt gataacgtgt agtcctgacc atctgtggta aagccggtaa aggccagata
     9541 gggtctaaca ctccacaatc cgtcaaccca acggaacccg ctctcaacat gagcacccgc
     9601 gccgttacta ttgtaatcgc caaacgctgt tgccccatta ctcatcttgc catggatggt
     9661 gttggcaaaa cggtcaactt tcaccacccc atcaacatag gcaccgttct gatgctccca
     9721 accggcataa gcccccaggg tatagctatc gatattacct tttccgccgc gatcaaaacc
     9781 aatatcagaa tgagagtaac caaagaacaa gccgcgaatt gtactgcttt cttcacggga
     9841 gaaacggcta tcgataccga gcgtcaggcc cgtcaatgtt tgctcaaaac cagctcccgc
     9901 atcagtggtc acgttgttgc gggtgttaat tgccgaactc cacatcgccg tatcgtaact
     9961 aacgcttttt acgctaccaa gacgctcacg cacggtgtcc agttctgcat caaataccag
    10021 cggttgtgcg gccgccatat tcagcacatc agtggttgaa ggggtaattt gcgcgcgatt
    10081 ctctgccaaa ctccagctat ggttgccatt atccagcaag gtatattcat acgtaccgat
    10141 atcaacaacg cctccggcat tgcccaacgt aaatgcagca tcaccgccgc ccgttgttac
    10201 cagtgtaagg ctatctcctg ctgccgggct ggcaccggtg tccgtcacga atattttgaa
    10261 atcacctgtt gcctgaccgg tgacgttgag ctgatcgctc tgatgattag ccatatcggt
    10321 acgcatataa aaattgccgt ttcccgacag ggtattggtg gtcaacgtaa tgaaattttc
    10381 cgcacttgcc gtcactgatg aacgagtcac tggctcatcc atcataatca catttgcgtc
    10441 agacatcgca aggttggcta agttgaggag ggtgttttgg ttcgtcgtag tgatatcggc
    10501 aatgatggcc catacgctat tttcgagcga aacgtccgct ttgctggtat ccacggcacc
    10561 atgcgttcta aaagaagcgc cctcagaaac cactacctta cccaccaaca tagcgggtgc
    10621 ataatttatt tgcggcttca tgacctcaag aatgccatca ttccctctga ctgacacgtt
    10681 aaccattgtg ccagcccaga cattagcgcg gccattgttg ataaccatat tttcagagat
    10741 ggctttagag gaatacgtga tacttccatt ctggtctgat cgaccgagat catataccgc
    10801 atttgcctgc actttcgtac cagtatcctt tcccagcgat tgcatagtgg catgctcatc
    10861 aaggatagta tcaatggcct gcgtgtcctc cataacaatg agcccggaac catcatccag
    10921 ttcataattt tttgacacac catcttttat actaaattgg cctttactgt ttgtaccact
    10981 cacttccagc gcattcgttg agacaattaa ttttccgcct gcttttttat caacgccagt
    11041 tgcagtcccg ccatccataa cctccagtaa gccgccacta tctacagtag tattataagc
    11101 gaagtcattt tcttcaactc gcaaacttcc gccgttttcc aacagcatat tgttagcaat
    11161 accattcttg atttcgaact gaccgagacg gtttattccg aatgcctcca tgacccgcgt
    11221 gcttgcttta atagcaccgc ctgctttctg atctaccgca atcgctaatc ccccctcttt
    11281 aacctccagt aatcctccct tttcgatagc ggcaaggacg gtaatcccat ctttttcaac
    11341 gattaagcgc ccgcctttaa tcgtgggatc attcgctgcg ccataaacct gtagcacacc
    11401 attattgagg gtagtctggt ttgccgcgcc acccatttga acaatttgat aaccgtcatt
    11461 taatactgag tattctgcgg taccattcat ttcaatgtac tgataccctc cgtt
//
LOCUS       DAJVUP010000138        11472 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.138, whole genome shotgun sequence.
ACCESSION   DAJVUP010000138 DAJVUP010000000
VERSION     DAJVUP010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11472
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.138"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..148
                     /locus_tag="OQQ75_003272"
     CDS             <1..148
                     /locus_tag="OQQ75_003272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1977502.1"
                     /translation="LQDAVDLEIATEEENSLLEAWKKYRVLLNCVDTSTAPDIEWPEE
                     PDTM"
     gene            complement(264..512)
                     /locus_tag="OQQ75_003273"
     CDS             complement(264..512)
                     /locus_tag="OQQ75_003273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1977503.1"
                     /translation="MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(740..805)
                     /locus_tag="OQQ75_003274"
                     /pseudo
     CDS             complement(740..805)
                     /locus_tag="OQQ75_003274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
     gene            1027..2712
                     /gene="btsS"
                     /locus_tag="OQQ75_003275"
     CDS             1027..2712
                     /gene="btsS"
                     /locus_tag="OQQ75_003275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulatory system sensor histidine
                     kinase BtsS"
                     /protein_id="HCS1977504.1"
                     /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF
                     LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM
                     GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA
                     IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS
                     TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISST
                     YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR
                     LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK
                     AVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV
                     NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA
                     GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLQLPWRDEA"
     gene            2709..3428
                     /gene="yehT"
                     /locus_tag="OQQ75_003276"
     CDS             2709..3428
                     /gene="yehT"
                     /locus_tag="OQQ75_003276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310963.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BtsR"
                     /protein_id="HCS1977505.1"
                     /translation="MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVH
                     KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP
                     IDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM
                     SGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR
                     NGLTVPVSRRYLKSLKEAIGL"
     gene            3475..3945
                     /locus_tag="OQQ75_003277"
     CDS             3475..3945
                     /locus_tag="OQQ75_003277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1456 family protein"
                     /protein_id="HCS1977506.1"
                     /translation="MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKE
                     DEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTD
                     DILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS"
     gene            complement(3986..4447)
                     /locus_tag="OQQ75_003278"
     CDS             complement(3986..4447)
                     /locus_tag="OQQ75_003278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416627.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HCS1977507.1"
                     /translation="MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAIT
                     YVYKGDKVLKQSSETKIQFASISATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYA
                     QENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK"
     gene            complement(4572..6572)
                     /locus_tag="OQQ75_003279"
     CDS             complement(4572..6572)
                     /locus_tag="OQQ75_003279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HCS1977508.1"
                     /translation="MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHEN
                     GALIATFSDGVRTQLANGQALKEAQCSCGASGMCRHRVMLVLSYQRLCATAQPTGKEE
                     EWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSS
                     IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEG
                     KTCRQYVQQLSQALWLSGISQPLIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDA
                     FHARASHYHAGECLRQLAALNSRLNCAQEMARRDSVGEVPPVPWRTVVGSGIAGEAKL
                     DHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSF
                     QAGALAGGQIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALR
                     EYLRQRPPACIRPLNQVDNLFILPVAECISLGWDSGRQTLDAQVISGEGEDNLLTLSL
                     PASACSPFAVERMAALLQQTDDPVSLVSGFVSFVEGQLTLEPRVMMTKTRAWALDAET
                     APVAPLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAISQAELLANDLTAV
                     GFYRLAHVLVQFRNTESEARVEAMNNGVLLCEQLFPMLQQQG"
     gene            complement(6569..7705)
                     /locus_tag="OQQ75_003280"
     CDS             complement(6569..7705)
                     /locus_tag="OQQ75_003280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HCS1977509.1"
                     /translation="MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEW
                     LYGRDPERLQRGERSGGLGGSNLTTPEWFNSIHTLFPQQVIERLESDAVLRYGIEDVV
                     TNLDVLERMQPSESLLRAVLHTKHLMNPEVLAAARRIVRQVVEEIMARLAKEVRQAFS
                     GVRDRRRRSFIPLARNFDFKSTLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLV
                     LLVDQSGSMVDSVIPSAVMAACLWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQ
                     LGGGTNIASAVEYGRQLIEQPAKSVIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGL
                     AALDSTATPCYDRDTAQALVNVGAQIAAMTPGELASWLAENLQS"
     gene            complement(7698..9977)
                     /locus_tag="OQQ75_003281"
     CDS             complement(7698..9977)
                     /locus_tag="OQQ75_003281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977510.1"
                     /translation="MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRV
                     DELFLAHQLPVAIYSYCQYQDGAAPGRGAWTPFAEFSPEWQALQAARRIQAQTYFIDL
                     PCWAQSEEVDDSPDTQEESQALLLRATRMDNSDTLWDHLFEDESQQIALPSALAHYFA
                     QLRGDFPGDALNRQREAFMARWIAWAVQRNNGDVLVVCGGWHAPALAKMWRECPQEIN
                     KPELPSLANAVTGCYLTPYSEKHLDVLAGYLSGMPAPVWQNWCWQWGLQQAGEQLLKT
                     VLTRLRQHNLPASIADMAAAHLHAMALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPL
                     PWSYRGVIHPDTDPILLTLIDTLAGDGFGKLAPSTPQPPLPKDVTCELERTAISLPAE
                     LTLNRFTPDGLAQSQVLHRLAILEIPGIVRQQGSTLTLAGNGEEHWKLTRPLSQHAAL
                     IEAACFGATLQEAARHKLEADMLDAGGIGSITTCLSQAALAGLASFSQQLLEQLTLLI
                     AQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCAAIDRTLWLCESNGRPDEK
                     EFHAHLHSWQALCHILRDLHSGVNLSGVSLSAAVALLERRSQAIHAPALDRGAALGAL
                     MRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPAFIAGFSSHLNQLS
                     DANFINALPDLRAVMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQAIAHH
                     QQLEQQALASLQHWGVFHV"
     gene            complement(9988..11076)
                     /locus_tag="OQQ75_003282"
     CDS             complement(9988..11076)
                     /locus_tag="OQQ75_003282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310954.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HCS1977511.1"
                     /translation="MSPQNNHLQRPPAAVLYADELAKLKQNDNAPCPPGWQLSLPAAR
                     AFILGDSAQNISRKVVISPSAVERMLVTLATGRGLMLVGEPGTAKSLLSELLATAISG
                     DAGLTIQGGASTTEDQIKYGWNYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITR
                     TPLEVQDCLLGMLSDRVMTVPELTGEASQLYAREGFNIIATANTRDRGVNEMSAALKR
                     RFDFETVFPIMDFAQELELVASASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEK
                     KTSMDTLTAIMSTAEAVNVAHAVGVRAWFLANRAGEPADLVDCIAGTIVKDNEEDRAR
                     LRRYFEQRVATHKEAHWQAYYQARHRLP"
BASE COUNT         2746 a         2917 c         3010 g         2799 t
ORIGIN      
        1 acttcaggat gctgtagatc tggagatcgc aacggaggaa gaaaactcgt tgctggaagc
       61 ctggaagaag tatcgggtgt tgctgaactg tgttgataca tcaactgcac ctgatattga
      121 gtggccggaa gaaccagaca caatgtaagc gaaaaagaaa aaccgcagac acgacgtatg
      181 caggacgtgc tgcggttggc tggtaaactt tcgatagtgc gagtattgaa tgatttccag
      241 ccgttaccga ttttacgtgt ttattagtga acaaaccact cgtcagcaga ctcccaggta
      301 tctttcagag tctcctgaac aaatgttttt gcagaatcct tatctgcggt gcgtgtaaca
      361 gaaaggccat cgttgctggt ggcttttacg atcacctcta catcgtcata acgtttactg
      421 atgcgtcggg ttaattcttc ctttaacgca tccacagcac cgtttggcat tttagtgatt
      481 ttttctttag cgatacagat ctcaacacgc ataacaccct cttgtaactg tagttatgta
      541 caggtgttat ttttatctgt atggataacc agtatcaatt tctgatattg tttatggggc
      601 atcaatgggg catgtatggg acacttttta tcggcgaaat tcgtcgaagt tcgtcgacat
      661 ggtaaacgaa tcatctatcc aacccttgaa aaacggcgct cctggacgat cttcgtcgat
      721 tttttaaaat gttgcgtcac gcgcgtaacg tgacagggtt aatatcacaa agcaacgcca
      781 cttcaccaat tgtgtaaagc gccatcgtct cacccttgct cgcgaggtcc cggtttaact
      841 ttagacgcag ttttgcgaac caggtagttt tgcccgtttt ttgtgcatct atagggtgat
      901 tttatttttg ccaggcgatt ttgagtgatc gtactcacga attctcattt ttctgcaaga
      961 gttcaaagaa agttaaacgc aggcaatgta tgttacgcgt tttaaaggga agtgtggttt
     1021 gcgggtatgt acgattttaa tctggtgttg ctgctgcttc agcagatgtg cgttttttta
     1081 gtcattgcgt ggttaatgag taaaacgcca ttattcatac cgttaatgca ggtcacggtt
     1141 cgtctgccgc ataaatttct ctgctacatc gtcttttcca tcttctgcat catgggcacc
     1201 tggtttgggt tgcacattga cgattctatt gccaataccc gtgcgatagg cgcggtaatg
     1261 ggcggcttac tcggcggtcc ggtcgtcggt gggctggttg gcctgaccgg cgggttacat
     1321 cgatattcga tggggggcat gaccgcgcta agttgcatga tctcgaccat cgttgaagga
     1381 ttgctcggcg gcctggtaca cagcatcctg attcgtcgcg ggcgtactga taaagtcttt
     1441 aaccccatta ccgccggtgc cgtcacgttc gtcgctgaaa tggtgcaaat gttgatcatc
     1501 ctggcgatcg cccgacctta tgaagatgcg gtgcgtctgg tgagtaatat tgctgcacca
     1561 atgatggtca ccaataccgt cggcgcggcg ctgtttatgc gtatattgct cgataaacgc
     1621 gcgatgtttg aaaaatacac ttcggctttt tctgccactg cgctgaaagt ggctgcctcg
     1681 acggaaggca ttttgcgcca ggggtttaac gaagtgaaca gcatgaaagt ggcacaggtg
     1741 ctgtatcagg agctggatat tggtgcagtc gcgattaccg atcgagagaa attgctggcc
     1801 tttactggaa ttggtgacga ccaccattta cccggcaaac cgatttcttc gacttacacc
     1861 ttaaaagcga ttgaaaccgg tgaagtggtc tacgctgatg gcaacgaagt accttatcgt
     1921 tgctctttgc atccgcaatg caaactgggg tcgacgctgg taattccgtt gcgtggtgaa
     1981 aatcagcggg tgatgggcac catcaaattg tatgaagcca aaaaccgttt attcagttca
     2041 ataaaccgca cgctgggcga ggggattgcg caactgcttt cggcgcagat tcttgccggg
     2101 caatatgagc ggcaaaaagc gatgctcacc cagtcagaaa tcaaactgct tcacgcccag
     2161 gtgaatcctc attttttgtt taatgcgctt aacaccatta aagcggtgat ccgccgcgac
     2221 agcgaacagg ccagccagct ggtgcagtat ctttccactt ttttccgcaa aaacttaaag
     2281 cggccttcgg agtttgttac tctcgccgac gaaattgaac atgtgaacgc ttatctgcaa
     2341 attgaaaagg cgcgcttcca gtcgcggttg caggtcaaca ttgctattcc gcaagaatta
     2401 tcccagcagc aattgcccgc gtttaccctg caaccgatag tggaaaacgc cattaaacat
     2461 gggacatcac aactgctgga tacagggcga gtggcaatca gcgcccgacg tgaggggcaa
     2521 catttgatgc tggagatcga agacaatgcc ggtttgtatc aaccggtaac caatgccagt
     2581 gggctgggga tgaatctggt ggataagcgt ttacgtgaac ggtttggcga tgactatgga
     2641 ataagcgtcg cctgtgagcc tgatagttac acccgaataa cgttacaact accatggagg
     2701 gacgaggcat gattaaagtc ttaattgtcg atgatgaacc gttagcacgg gagaacctgc
     2761 gtgtattttt gcaggagcag agcgatattg aaatcgttgg agagtgttca aacgccgtgg
     2821 aagggatcgg cgcggtgcat aaactgcgcc cggatgtgct gtttctcgat atccagatgc
     2881 cgcgcatcag tggtctggaa atggtgggga tgcttgaccc ggaacatcgc ccgtatattg
     2941 tttttctcac tgcgtttgac gaatacgcta ttaaagcctt tgaagaacat gcctttgatt
     3001 atctgctgaa gccaattgat gaagcgcgac tggagaaaac gctggcgcga ttgcgtcagg
     3061 agcgcagcaa gcaggatgtt tcgctgttac cggaaaatca acaggcgctg aaatttatcc
     3121 cttgtacggg gcatagtcgg atttatttgc tgcaaatgaa agatgtggca tttgtcagca
     3181 gtcggatgag cggtgtctac gttaccagcc acgaagggaa agagggcttt accgaattga
     3241 cattacgtac cctggaaagt cgtacaccac tactgcgctg ccatcgtcag tatctggtta
     3301 acctcgcgca tttacaggag attcgtctgg aagataacgg ccaggccgag ttgattttgc
     3361 gtaatggctt aaccgtgccg gtcagccgcc gttatctgaa aagcttaaaa gaggcgattg
     3421 gcctgtaaaa gactgctaaa atggcttttt gcctcatcaa cacctgaagg cctcatgcta
     3481 agtaacgata ttctgcgcag cgtgcgctac attttgaaag ccaataataa tgacctggtg
     3541 cgtattctgg cgctgggtaa tgtcgaagcc accgcggaac agatcgccgt ctggctacgt
     3601 aaagaagacg aagagggttt tcagcgttgt ccggacattg ttttgtcgtc attcctcaat
     3661 ggcctgattt atgaaaaacg cggcaaggat gagtctgctc cggcactgga gccggaacgt
     3721 cgcattaata acaacatcgt gctgaaaaaa ttacgcatcg cgttttcgct gaaaaccgat
     3781 gacattctgg ctatcctcac cgaacagcag ttccgcgttt cgatgccgga aattacagcg
     3841 atgatgcgcg caccggatca taaaaacttc cgcgaatgcg gcgatcaatt tttacgttat
     3901 tttctgcgtg gactggcagc gcgccagcat gtgaagaaaa gctaagacgg gtatggcggc
     3961 catacgaaac atggccgccg acagattatt tcacttcttt aaaaccagcg gctttcatca
     4021 ccagttccat ttgcgccata gtgatacctt ttttggcatc ttcagcagaa acgttgattc
     4081 ctgaaatacc ctgcagggct ttaaaatcca ctttttccat atcgatagtc acgttttcct
     4141 gcgcgtaggt atcggtatag gttaattttt cttcaacacc cgcgatgttt ttgtatttgg
     4201 cgcttaacgg ctcaagtgtc ttggcagcat cttctttggt ggttgcacta atggaggcaa
     4261 attgaatttt ggtttcagaa gattgcttaa gcaccttgtc acctttgtag acataggtaa
     4321 tggcaatttc agtgccgttc agattggcgc tgaatttctt cgattcttct ttgtcaccgc
     4381 agccagcaag agagaaaacc agaacagatg caacaacgag ggaaaacagc ttattgaaag
     4441 ccttcatgta aaactccatt ttatttaatc aagaaactgg tgactctcac caggggctat
     4501 ataggatatg cctaataccg tggcgtgagc agtccggaac tggagtagaa ctcttagtaa
     4561 aaagcactat ttcatccttg ttgctgaagc atggggaata attgttcgca aagcaaaaca
     4621 ccgttattca ttgcttctac ccgtgcctcg ctttctgtat tacgaaattg taccaacaca
     4681 tgtgccagcc gataaaaacc caccgcggtg aggtcattcg ccagcaactc tgcctgacta
     4741 atagcgctct gttcctgata gcgccagccg ttatggagca gttgaataag taacgcctgg
     4801 cagcgcatca gcaactgatg agcggtagac ggcacaggca aaacgctggc agaaggtagc
     4861 ggtgccacag gcgcagtttc cgcgtccagc gcccaggcac gggtttttgt catcatcacc
     4921 cgtggttcca gtgtcaattg cccctctaca aagctgacaa agccagaaac cagactcacg
     4981 gggtcgtctg tttgttgcaa aagcgccgcc atgcgttcaa cggcaaaagg agaacaggca
     5041 gatgccggaa gggataacgt cagcagatta tcttcacctt cgccgctgat tacctgcgca
     5101 tccagcgtct ggcggccgct gtcccaaccg agtgaaatac actcagcgac cggcagaata
     5161 aataagttat ccacctgatt aagaggccgt atgcaggcgg ggggacgctg gcgtaaatat
     5221 tcccgcaaag ccacaatgcc cggctggcgt aacggcgcgc tcaacatttg ccaggcgtct
     5281 ggcgacagcg gcacaacgct gcttaagcgg ttgcgggtag ctaacagcag ctcgccatcg
     5341 gcactgcgtt ttgctgcttg tgaaacaatt tgcccacccg ccagtgcgcc agcctgaaaa
     5401 ctaaacagcc gacgcgtagc tgccggtgag ttttcctgtt cacttcgcgg ccaactacgc
     5461 gaaagatgca aaatactgcc ggtgtcggga tcggtaaacc agatgcgtaa accataatgc
     5521 tcaatatcct gccagcaacg catacctaaa gacaccagcc gcagatgatc aagctttgct
     5581 tctccggcaa tgccagagcc aacgaccgtg cgccacggca caggaggaac ttcaccaaca
     5641 ctgtcgcgcc gggccatctc ttgtgcgcag tttaatcgac tgtttaatgc cgcaagctga
     5701 cgtaagcatt ctccggcatg atagtggctg gcgcgggcgt ggaaggcatc aacgctggcg
     5761 cgcagttgcc gtagcgattc actcacccat cgccagctgc agcgttccgc tgcttgctgc
     5821 gcgcggctga aagcggcctc gtagtgaata agcggctggc tgatgccgct cagccataat
     5881 gcctggctta gttgttgaac atattgacga cacgttttgc cttcttcgct ggcaaacgga
     5941 tcgtcagatg atgtgacgtg ttcgctgcgc atctgccaga ttaaatgagt caattccgct
     6001 tgctgcgctt ttgcctggac aaaggcctgt actgccagta cgacatgttc gcaaagtgtg
     6061 ccttcaatac aatcacaacg ggcgaaacga atactgctgc gggaataaaa acgcacatcg
     6121 ctcatcggta agcgggcaga gggaatttca cccggcgcac agaacaactc aatggtgatg
     6181 cctttagcga ccagcgcctg tgcgcgtttg cgggtggcat cgggaagggt agccagttct
     6241 tccagccaga ttgccggatc ccattcctct tcttttcccg taggctgggc ggtagcacaa
     6301 agtcgttgat aacttaacac cagcatcacg cgatgacggc acataccgct ggccccgcag
     6361 ctgcactgag cctctttcag tgcctggccg ttcgccagct gggtacggac accgtcactg
     6421 aaggtggcga ttaaagcgcc gttctcatgg ctgatctccg ggacgttgcc attttccagt
     6481 tccttaagac tgcgcttaac aaaaccggca ttgcttaacg ccgtcagggc ctgcggtgtc
     6541 agttctaata attccggacg tagtgaattc atgactgaag attctccgca agccatgatg
     6601 ccagctcgcc cggtgtcatg gcggctattt gtgcgccgac attaaccagc gcctgggccg
     6661 tatcgcggtc atagcaaggt gttgctgtgc tatcgagcgc tgccagtccc agcactttga
     6721 tgccgctctg gacacacttt ttcacctgat gcgtcagtaa tgatgatgaa cccccttcgt
     6781 aaaaatcgct cacgaggata atgacgcttt tcgctggttg ttcaataagt tgccgaccat
     6841 actccacggc actggcgata ttggtcccgc cgcccaactg tactttcatt aataactcta
     6901 ccggatcggc aacgtctgcc gtgagatcaa cgacgcttgt gtcaaacgcc accagatggg
     6961 tacgaatgcc gggtaactgc cacaaacagg ccgccatcac cgcagagggg atcaccgaat
     7021 cgaccatcga gccgctttga tcaaccagta agaccagttg ccattgttcg ctttggcgtt
     7081 taatgcggct gttaaagcgg ggggattcga tatacaactt gccgtgttgc gggtgccagt
     7141 gttgcaggtt ggcgcgcaga gtacttttga aatcaaagtt tcgcgccagt ggaataaatg
     7201 agcggcgacg gcgatcgcgg acaccagaaa aagcctgacg aacttccttt gccagtcgcg
     7261 ccataatttc ttcaacaacc tggcgcacaa tcctgcgggc ggcagccagt acttcggggt
     7321 tcatcagatg tttggtgtgc aaaacggcgc gtagcaggct ttcggaaggc tgcatacgtt
     7381 ccagcacgtc gagatttgtc accacatctt caatgccgta gcgcagtacg gcatcgcttt
     7441 ccagccgctc aatcacctgt tgcggaaaca gcgtgtggat actgttgaac cactcaggag
     7501 tggtgagatt tgagccacct aatccaccag agcgttcacc acgctggagc cgttcaggat
     7561 cgcgcccata cagccactcc agcgcgtgat ctatctgccg ggcgttgtca tccagcccac
     7621 aaagcgtcgt ttctgccgct tcgccaagaa ttaatcgcca gcgttgtagc tcacgggtgg
     7681 tcagaagatc gttcagttca gacatggaaa actccccagt gttgcagcga tgccagtgcc
     7741 tgctgttcga gttgttgatg atgtgcaatg gcttgcggtg gacaatgcaa cggcatttgc
     7801 agtgccgaaa cgggaagttg cgccagttga taatgctcaa gcacctgatg cgccagcgtc
     7861 ccgcgttctc gtggcggtag ccaggccatc accgcgcgta aatcgggcag ggcattgata
     7921 aaattggcat cactcagttg attcaaatgg ctgctgaaac cggcgataaa tgcaggttga
     7981 caggccagtt gatgacgggc taatgccagc aaaccgtgca gcgcctcgcc ggattgtgcc
     8041 ggggataact gcgccagcat cgtcagcgcc gcttcggcac tggcgttggg atgttccaga
     8101 cgcattagtg cgccaagagc cgcgccgcga tccagcgccg gggcatgaat cgcctgactg
     8161 cgtcgctcca gtaaggctac cgccgcagaa agcgaaacgc cggataaatt aacgccgcta
     8221 tgtagatcgc gcagaatatg gcaaagcgct tgccagctat gcaggtgagc gtgaaactcc
     8281 ttttcatccg gtctgccgtt agattcacac agccacagcg tgcgatcgat agccgcgcat
     8341 aacgtcgttt gtaatatctg cgcgccttgc ataccgctaa tttcatccag ccgccataag
     8401 gcatatagca cttccagcgc ctggcccatt tcggcaaatt gattttcctg ggcgattaat
     8461 aatgtgagtt gctccagtaa ttgttgactg aaggacgcca gacccgctaa cgccgcctgg
     8521 ctaagacatg tggtgatact gccgatgcca cccgcgtcca gcatatcggc ttctaattta
     8581 tggcgtgcgg cttcctgaag tgttgcacca aagcatgcgg cctcaatcaa tgccgcatgc
     8641 tggctaagcg ggcgggttaa tttccagtgt tcttcaccgt tgcctgcaag tgtcagtgta
     8701 cttccctgct ggcgtacaat cccagggatc tccagtattg ccagccgatg taacacctga
     8761 ctttgcgcca gcccatcggg ggtaaagcga tttaaggtaa gctccgccgg aagagagatt
     8821 gcggtacgtt ccagttcgca ggtgacatct tttggcagag gcggttgtgg cgtggaaggg
     8881 gcaagtttac cgaatccgtc acccgctaat gtgtctatca acgttagcag aatcggatcg
     8941 gtatcgggat gaataacgcc gcgatagctc cacggcaacg gtgcattcag ggcttcttta
     9001 atcagcgagc ctgctatggc atccagccag tcagtgcgta acggtagtgt atgaccgcgc
     9061 aactgtgcca gtgccattgc atgcagatgt gcggcagcca tatccgcgat cgaagcaggc
     9121 aagttgtgct ggcgcaaacg ggtgagaacc gtttttagca gttgttcacc ggcctgctgt
     9181 aagccccact gccagcacca gttttgccag accggggcag gcataccgga aaggtatcct
     9241 gccagcacat caaggtgctt ttcactgtag ggggtgagat aacaacctgt aacggcattt
     9301 gccagcgagg gcaattctgg cttgttaatt tcctgcggac attcgcgcca catttttgcc
     9361 agtgcaggag cgtgccagcc accgcagacg actaacacgt cgccattatt tcgctgcacc
     9421 gcccatgcaa tccagcgagc cataaaggct tcgcgctgac gattgagtgc atcgccgggg
     9481 aaatcgcccc gcagttgggc aaaatagtgc gccagcgcag agggtaatgc aatttgctgg
     9541 ctttcatctt cgaacaagtg atcccacagg gtgtcgctgt tatccatgcg ggtggcacgc
     9601 agcagcaagg cctggctttc ctcttgcgta tcaggcgaat cgtccacttc ttcactctgc
     9661 gcccagcaag gcaaatcgat gaagtaagtt tgtgcctgaa tacgacgtgc ggcttgtagc
     9721 gcctgccact ccggcgaaaa ttcagcaaat ggcgtccagg caccacgccc gggggctgca
     9781 ccgtcctgat actggcaata actgtaaata gctaccggaa gctggtgggc taaaaacagt
     9841 tcgtctaccc ggtcattaaa atcagccggg ccttcaatca atacgtatcg tggccgctgg
     9901 ctttcgatta acgatttcac cagccgggcg caggccggac tatgatgccg gatgccgaca
     9961 attaacggct cgctcatgca tctttcctca cggcaggcgg tggcgggctt gataataagc
    10021 ctgccagtga gcttctttat gtgtggcgac tcgttgttcg aagtaacggc gcagacgagc
    10081 gcgatcttct tcgttatctt tgacgatggt tccggcaatg cagtccacca ggtcggctgg
    10141 ctcacctgcg cgattcgcta aaaaccaggc gcggacgcct acggcgtggg ccacgttcac
    10201 ggcttcagcg gtggacataa tcgctgttag tgtatccatt gacgttttct tttcgccgtt
    10261 ggcacgcaga tcgcggaagg tgcggaccag taactccagt accgcgtcag gcactttatg
    10321 cggaataccg ctatgagcca gcaaacgcgc cgaagcactg gcgaccagtt ccagctcctg
    10381 ggcgaaatcc ataatcggaa agacagtttc aaaatcgaag cgacgcttta gcgcagcact
    10441 catttcattg acgccgcgat cgcgggtatt ggcagtggca ataatattaa agccttctcg
    10501 cgcatagagc tgactggctt caccagtgag ttccggcacc gtcatcaccc tgtcagaaag
    10561 catacctaac agacagtctt gcacttccag cggtgtacgc gttatctctt caaaacggac
    10621 gattttgccg tcgcgcattc cctggtaaag cggggcaggg accagcgctt ccgttgatgg
    10681 accatgattg ataagcaggg cgtagttcca gccgtacttg atttgatctt cggtagtaga
    10741 tgcgccgccc tggatggtta acccggcatc gccgctaata gcggttgcca gtaattcaga
    10801 caggagagat tttgcggtgc caggttcccc caccaacatc aaaccgcgtc cggtggcaag
    10861 agtgactaac atacgttcga cagcggaggg actaatcacc actttacggc taatattttg
    10921 cgcgctatcg ccaaggataa aagcacgggc cgcaggcaaa cttaactgcc aaccgggcgg
    10981 gcaaggtgcg ttatcatttt gttttaattt tgccagttca tcggcgtata acacagcagc
    11041 aggcggacgc tgcagatgat tattctgcgg tgacatatat tcatccctga aatgtattaa
    11101 tgaaataaac gatattttac gcgcaataaa tgtttggcgc attagttgtt tgatcgaaaa
    11161 atatctggaa agcagatcac agtaaataaa aaaacctgct ggtgaggcag gttcttttat
    11221 ttactacttt caggcctaac accacagcct gtgcaacatc gtgttccaac gaacgaatta
    11281 taaccacggc tggaccccgt tgcaattaag ataatgagat ttataatcca gaccgttggg
    11341 acgttgcgcc ggatcgaatc tatttcaagt cctggctacc ggacgggtgg tgctgcaggt
    11401 ggtgccctga tccggagtgc aacatcgtgg tccaacatac gtaaaccagt atcgacaggc
    11461 agtgtaaggg ta
//
LOCUS       DAJVUP010000139        11432 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.139, whole genome shotgun sequence.
ACCESSION   DAJVUP010000139 DAJVUP010000000
VERSION     DAJVUP010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11432
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.139"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..391)
                     /gene="ychE"
                     /locus_tag="OQQ75_003283"
     CDS             complement(<1..391)
                     /gene="ychE"
                     /locus_tag="OQQ75_003283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YchE"
                     /protein_id="HCS1977512.1"
                     /translation="MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN
                     KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED
                     KQNKQEKSETAVRESIGVVPLALPLMAG"
     gene            869..3544
                     /gene="adhE"
                     /locus_tag="OQQ75_003284"
                     /gene_synonym="adhC"
     CDS             869..3544
                     /gene="adhE"
                     /locus_tag="OQQ75_003284"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HCS1977513.1"
                     /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD
                     ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGILSEDDTFGTITIAE
                     PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA
                     GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP
                     VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG
                     KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH
                     EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA
                     RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN
                     MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
                     ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF
                     EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD
                     YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL
                     KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA
                     NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL
                     LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ
                     ILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA"
     gene            3668..4564
                     /locus_tag="OQQ75_003285"
                     /pseudo
     CDS             3668..4564
                     /locus_tag="OQQ75_003285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904641.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
     gene            complement(4846..5463)
                     /gene="tdk"
                     /locus_tag="OQQ75_003286"
     CDS             complement(4846..5463)
                     /gene="tdk"
                     /locus_tag="OQQ75_003286"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HCS1977514.1"
                     /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF
                     GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE
                     VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA
                     GRPYNEGEQVVIGGNERYVSVCRKHYKEALQVGSLTAIQERHRHD"
     gene            6068..6481
                     /gene="hns"
                     /locus_tag="OQQ75_003287"
     CDS             6068..6481
                     /gene="hns"
                     /locus_tag="OQQ75_003287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator H-NS"
                     /protein_id="HCS1977515.1"
                     /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE
                     SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE
                     NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ"
     gene            complement(6625..7533)
                     /gene="galU"
                     /locus_tag="OQQ75_003288"
     CDS             complement(6625..7533)
                     /gene="galU"
                     /locus_tag="OQQ75_003288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HCS1977516.1"
                     /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY
                     VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV
                     TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD
                     ETGHSQIMVEQVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY
                     VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF
                     VEYGIRHNTLGTEFKAWLEEEMGIKK"
     gene            complement(7735..8748)
                     /gene="rssB"
                     /locus_tag="OQQ75_003289"
     CDS             complement(7735..8748)
                     /gene="rssB"
                     /locus_tag="OQQ75_003289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RssB"
                     /protein_id="HCS1977517.1"
                     /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL
                     ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV
                     EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDATVDNPAAAAKLLQEL
                     QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL
                     LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI
                     LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML
                     SAE"
     gene            complement(8840..9745)
                     /gene="rssA"
                     /locus_tag="OQQ75_003290"
     CDS             complement(8840..9745)
                     /gene="rssA"
                     /locus_tag="OQQ75_003290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HCS1977518.1"
                     /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS
                     LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQCREIMPETEI
                     ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN
                     PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGESLPWHARLKERLG
                     SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH
                     AAIAAGQLAVERKMDELLPLVRTNI"
     gene            9858..10316
                     /locus_tag="OQQ75_003291"
     CDS             9858..10316
                     /locus_tag="OQQ75_003291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HCS1977519.1"
                     /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ
                     DADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE
                     GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ"
     gene            10366..11208
                     /gene="purU"
                     /locus_tag="OQQ75_003292"
     CDS             10366..11208
                     /gene="purU"
                     /locus_tag="OQQ75_003292"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HCS1977520.1"
                     /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR
                     TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL
                     MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVNHEGLSRNEHDQKMADAIDAYK
                     PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH
                     YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR
                     TIIL"
BASE COUNT         3058 a         2849 c         2604 g         2921 t
ORIGIN      
        1 gccccgccat caacggcaac gccaatggca ccacaccaat gctttcacgt accgcggttt
       61 ctgatttttc ttgcttgttc tgtttatcct cgccaagctt gccgctgatc atcgacatcg
      121 ctatcgtcac caccaggatg cccccggcga tacggaacga atcaattgat ataccaaaaa
      181 gttgcagaat cgtgtcgccg agaaaaagcg agatccacaa gataatggcc acagacaggt
      241 tggctgtaag gttagttttg tttcgcgctg ccgctgtctg ataactggtc atgctgataa
      301 agacgggaat aatccctacc gggttgacca gcgcaaataa cccgatgaaa aatttgaagt
      361 aaacgggaaa atcaaaaaag gtctgaatca cggttagctc cgaagcaaaa gccggataat
      421 gttagccata aataaggttg aaaagacgcg ctgacaatac gccttttgac agcatttttc
      481 acctcctaac tacttaaaat tgctatcatt cgttattgtt atctagttgt gcaaaacatg
      541 ctaatgtagc caccaaatca tactacaatt tattaactgt tagctataat ggcgaaaagc
      601 gatgctgaaa ggtgtcagct ttgcaaaaaa tttgatttgg atcacgtaat cagtacccag
      661 aagtgagtaa tcttgcttac gccacctgga agtgacgcat tagagataat aactctaatg
      721 tttaaactct tttagtaaat cacagtgagt gtgagcgcga gtaagctttt gattttcata
      781 ggttaagcaa atcatcaccg cactgactat actctcgtat tcgagcagat gatttactaa
      841 aaaagtttaa cattatcagg agagcattat ggctgttact aatgtcgctg aacttaacgc
      901 actcgtagag cgtgtaaaga aagcccagcg tgaatatgcc agtttcactc aagagcaagt
      961 agacaaaatc ttccgcgccg ccgctctggc tgctgcagat gctcgaatcc cactcgcgaa
     1021 aatggccgtt gccgaatccg gcatgggtat cgtcgaagat aaagtgatca aaaaccactt
     1081 tgcttctgaa tatatctaca acgcctataa agatgaaaaa acctgtggta ttctgtctga
     1141 agacgacact tttggtacca tcactatcgc tgaaccaatc ggtattattt gcggtatcgt
     1201 tccgaccact aacccgactt caactgctat cttcaaatcg ctgatcagtc tgaagacccg
     1261 taacgccatt atcttctccc cgcacccgcg tgcaaaagat gccaccaaca aagcggctga
     1321 tatcgttctg caggctgcta tcgctgccgg tgctccgaaa gatctgatcg gctggatcga
     1381 tcaaccttct gttgaactgt ctaacgcact gatgcaccac ccagacatca acctgatcct
     1441 cgcgactggt ggtccgggca tggttaaagc cgcatacagc tccggtaaac cagctatcgg
     1501 tgtaggcgcg ggcaacactc cagttgttat cgatgaaact gctgatatca aacgtgcagt
     1561 tgcatctgta ctgatgtcca aaaccttcga caacggcgta atctgtgctt ctgaacagtc
     1621 tgttgttgtt gttgactctg tttatgacgc tgtacgtgaa cgttttgcaa cccacggcgg
     1681 ctatctgttg cagggtaaag agctgaaagc tgttcaggat gttatcctga aaaacggtgc
     1741 gctgaacgcg gctatcgttg gtcagccagc ctataaaatt gctgaactgg caggcttctc
     1801 tgtaccagaa aacaccaaga ttctgatcgg tgaagtgacc gttgttgatg aaagcgaacc
     1861 gttcgcacat gaaaaactgt ccccgactct ggcaatgtac cgcgctaaag atttcgaaga
     1921 cgcggtagaa aaagcagaga aactggttgc tatgggcggt atcggtcata cctcttgcct
     1981 gtacactgac caggataacc aaccggctcg cgtttcttac ttcggtcaga aaatgaaaac
     2041 ggctcgtatc ctgattaaca ccccagcgtc tcagggtggt atcggtgacc tgtataactt
     2101 caaactcgca ccttccctga ctctgggttg tggttcttgg ggtggtaact ccatctctga
     2161 aaacgttggt ccgaaacacc tgatcaacaa gaaaaccgtt gctaagcgag ctgaaaacat
     2221 gttgtggcac aaacttccga aatctatcta cttccgccgt ggctccctgc caatcgcgct
     2281 ggatgaagtg attactgatg gccacaaacg tgcgctcatc gtgactgacc gcttcctgtt
     2341 caacaatggt tatgctgatc agatcacttc cgtactgaaa gcagcaggcg ttgaaactga
     2401 agtcttcttc gaagtagaag cggacccgac cctgagcatc gttcgtaaag gtgcagaact
     2461 ggcaaactcc ttcaaaccag acgtgattat cgcgctgggt ggtggttccc cgatggacgc
     2521 cgcgaagatc atgtgggtta tgtacgaaca tccggaaact cacttcgaag agctggcgct
     2581 gcgctttatg gatatccgta aacgtatcta caagttcccg aaaatgggcg tgaaagcgaa
     2641 aatgatcgct gtcaccacca cttctggtac aggttctgaa gtcactccgt ttgcggttgt
     2701 aactgacgac gctactggtc agaaatatcc gctggcagac tatgcgctga ctccggatat
     2761 ggcgattgtc gacgccaacc tggttatgga catgccgaag tccctgtgtg ctttcggtgg
     2821 tctggacgca gtaactcacg ccatggaagc ttatgtttct gtactggcat ctgagttctc
     2881 tgatggtcag gctctgcagg cactgaaact gctgaaagaa tatctgccag cgtcctacca
     2941 cgaagggtct aaaaatccgg tagcgcgtga acgtgttcac agtgcagcga ctatcgcggg
     3001 tatcgcgttt gcgaacgcct tcctgggtgt atgtcactca atggcgcaca aactgggttc
     3061 ccagttccat attccgcacg gtctggcaaa cgccctgctg atttgtaacg ttattcgcta
     3121 caacgcgaac gacaacccga ccaagcagac tgcattcagc cagtatgacc gtccgcaggc
     3181 tcgccgtcgt tatgctgaaa ttgctgacca cctgggtctg agcgcaccgg gcgaccgtac
     3241 tgctgctaag atcgagaaac tgctggcatg gctggaaacg ctgaaagctg aactgggtat
     3301 tccgaaatct atccgtgaag ctggcgttca ggaagcagac ttcctggcga acgtggataa
     3361 actgtctgaa gatgcattcg atgaccagtg caccggcgct aacccgcgtt acccgctgat
     3421 ctccgagctg aaacagattc tgctggatac ctactacggt cgtgattatg tagaaggtga
     3481 aactgcagcg aagaaagaag ctgctccggc taaagctgag aaaaaagcga aaaaatccgc
     3541 ttaatcagta gcgctgtctg gcaacataaa cggccccttc tgggcaatgc cgatcagtta
     3601 aggattagtt gaccgatcct taaactgagg cactataacg gcttccacaa cagggagccg
     3661 ttttcttatg ccacttctca atgatctgct cgatttcagt gaccatccgc ttatgcctcc
     3721 gccctctgca caactatttg cagaacacct tcccaccgag tggatacaac actgcctgac
     3781 gctttctgct catgcgaccg ttcgccgccg tcgtttaccg ggggacatgg ttatctggat
     3841 ggtggtgcaa tgagccaatt accgatgttg ttcgccgtct gaacctgagc gcggatggcg
     3901 aagcggggat gaacctgctg gcccgcagcg ctgtcaccca agcgcgtcag cgcgtggggg
     3961 ccgccccagt ggaatggctc ttccgccaga ccgcacagac aggggcgcgg aacgttacct
     4021 gaaggatgac tggcacggcc tgcaactttt tgccattgat ggcgcacagt tcaggacacc
     4081 tgataaaccc gagctgcgtg aatattatgg gtctgccaac acatccacta agcggcagaa
     4141 cgcctacccg gttatgcgtc tggtggcctt aatgaacctg ggaagtcaca ttctgctgaa
     4201 tgccgtgacc gcaccttacc ggcagagcga aactgtgctg gcccactcca tgctcgccac
     4261 catcccggat aactctatta cgttgtttga taagcttttt tacagcgaag acctgctgct
     4321 aacgctgaac cagaagggtt gtaaccgcca ctggctactg cctgcgtgga agaatatcgc
     4381 atcagaaatg atagagctgg gaaacacggc gtcaccaggg accatcccga aacgactgga
     4441 gcatcttcgg ggtgctctgg aagtggtgtt cataacaaaa cgcccccgac catcaaggcc
     4501 gaggtcggtt aagatatcaa aaacccgtta tcctgtgaaa catagtgccg ctcctcttaa
     4561 gtgaacggca ttgcccttct ggggccgtat tttttgttta cccaaagcaa cttttccata
     4621 aaccgacagc attagccttc atcatatttg cgacgatgta taacgcctaa atacagggat
     4681 attgtacttt acaggtcaca agtcaacgtc ggtgcttaag agccctgtga ggcgtatagc
     4741 ggcgttaaaa aactgccgag aagggtatat agcccggaag aagtgcgtaa aacgaactga
     4801 caggataaaa gtgccctgct caccctgtca gtaaagaaat tcttattaat cgtggcgatg
     4861 cctttcctga atagccgtta atgagccgac ttgtaacgcc tctttatagt gtttacggca
     4921 tacagaaacg tatcgttcat taccaccaat taccacctgc tcaccttcgt tataaggtct
     4981 gcctgcttga tcaagacgca gcaccatgct tgctttacgg ccacaaaaac agatggtttt
     5041 taattcaacc agtttgtcgg accatgccag taagtattgg ctgccaataa ataattcacc
     5101 tcgaaaatcg gtacgtaaac cataacaaag tacgggtata tcgagttgat cgacaacctc
     5161 cgataattca tatacttgtt gtctggttaa aaactggcat tcatcaacca gtacgcaatg
     5221 aattgcctgc tgttcatgtt ccgcacgaat ctcatcaaat aatgatgaat tttggttaaa
     5281 taattttgca ggcgatgaca aacctatacg cgaactgact ttcccggcac caaagcgatc
     5341 atcaatttct gccgtatata cgacagtgcg catgccgcgt tcttggtaat tgtatgaaga
     5401 ttgcaacaat gctgtagact tacccgcatt cattgcggaa tagtagaaat atagctgtgc
     5461 catcagccac aggccctcaa tgatatgaaa taaagttggc tggagtttat cataattcgt
     5521 cagtttttca gctcaacagt atgcacagaa gtgggtatat gcgttctccc ttacgaagcc
     5581 ttgcataatc cttctgagct atcattacaa ctgcctcgct tgttataagc gggtaaatga
     5641 ctgctggtaa ctattcacaa tctttaacct gttgcgcaag taatagccct ctgttgacct
     5701 ccaggagata gtgcaatact aagtccatgc tcttattgcg actgttctac ttttcatcat
     5761 tcgcttaata gggaattctc gtaaacacaa ctaatacaga agactgaaag gccgtcagcc
     5821 tacgataatc tccccataaa atgtgacatg aatcaggaag ttttaacctc acgtgctgcg
     5881 aaatcatcgg tgtaaatagg gctatatgcc gcgtcttttc tggctaattt tatgaaaaga
     5941 tatttattgg cggcacaaaa taaagaacaa ttttgaattc cttacattcc tggctattgc
     6001 acaactgaat ttaaggctct attattacct caacaaacca ccccaatata agtttgagat
     6061 tactacaatg agcgaagcac ttaaaattct gaacaacatc cgtactcttc gtgcgcaggc
     6121 aagagaatgt acacttgaaa cgctggaaga aatgctggaa aaattagaag ttgttgttaa
     6181 cgaacgtcgc gaagaagaaa gcgcggctgc tgctgaagtt gaagagcgca ctcgtaaact
     6241 gcagcaatat cgcgaaatgc tgatcgctga cggtattgac ccgaacgaac tgctgaatag
     6301 ccttgctgcc gttaaatccg gcaccaaagc taaacgtgct cagcgtccgg caaaatatag
     6361 ctatgttgac gaaaacggcg aaactaaaac ctggactggc cagggccgta ctccagctgt
     6421 aatcaaaaaa gcaatggatg agcaaggtaa atccctcgac gatttcctga tcaagcaata
     6481 atcttttgta gattgcaatt gctaaaaatc ccgccatcgg cgggattttt tattgtccgg
     6541 tttaagacaa tttaataaga ataagctata aaaaaacggc gtcgattgtt caacgccgtt
     6601 tcgtggataa caccgatatg gatgttactt cttaatgccc atctcttctt caagccaggc
     6661 tttaaattcc gtgccaaggg tgttatgacg aataccgtat tcaacgaagg cctgcatgta
     6721 acctaattta ttaccgcagt catggctctt ccctttcata tgataggctt ccaccgtttc
     6781 tttttcgatc agcatatcaa ttgcgtcggt gagctgaatt tcatcaccag ctcccggagg
     6841 ggtttttgcc agcaacggcc aaatatccgc gctaagtacg taacgaccca caatagcgag
     6901 attagacggc gcaacatccg ctttcggttt ttctaccaca ccaaccatcg gtacactttc
     6961 acccggcgct aattcaacgc ctttgcaatc cacaacgcca tatgcggtca catcagcaac
     7021 ctgttcaacc atgatctggc tatgacccgt ttcatcaaag cggcggatca tctctgccag
     7081 gttatcctgt gacaaatcgg attcatattc atccagaata acatcaggca aaataacagc
     7141 taccggttca tcacccacta ccgggtgagc acacaatacc gcgtgtccca ggcctttcgc
     7201 cagcccctga cgaacttgca taatagtcac gtgcggcgga caaatagact gcacttcatc
     7261 aagcagttga cgttttacac gtttttccag cattgcttcc agttcaaaac tggtatcaaa
     7321 gtggttttca atcgagtttt tagatgagtg cgtaaccagc acaatttcag taatgccagc
     7381 cgcaatacat tcattcacga cgtattgaat taatggctta tcgacaagtg gcagcatctc
     7441 tttcgggatg gctttcgtcg ccggcaacat cctggttcct aatcccgcaa cggggataac
     7501 ggcttttttg actttcgtat taatggcagc catttaaatt ctcctggact gttcgtgttt
     7561 tgaacgtgtt catatttctg tatcgcatcc cagtatatca gcaccccgaa ggggctaagt
     7621 tctgaaaagg aggcgagtta gcataattaa gacaattact tatacgaatg gcgacgatag
     7681 taccaccagc cgacattagc aggtaatgca aatttagtcc gcgttatcgt ttgctcattc
     7741 tgcagacaac atcaagcgca gtcgaccacc ggttccccat atttggcatt gccaggcatc
     7801 gcatcgctgg ctcaattgat tcaaataagc gttacctaaa gtgcctaacg gaacaccatt
     7861 actgatttgc acctggtgtt cgccggtatt taacgtcgca ttcagacccg cagaaaccag
     7921 aatgagattt ttcagttcgc gatgataata gccaactaat agcggaaact gccccggcag
     7981 attggcctga cggagtaaat ggtttacctg cttcaataac gcgcccagct ctggcaaccg
     8041 ttgattttgg tgtgcaagct gttcctgtaa taatccgtta aacaatgcgc gtaataacaa
     8101 ggcagcaagt acgccattat gtccagctcg ggtgacatca aggcaataaa atgccagatc
     8161 gttttccgaa agtgcggcaa tatcaagcac caggccgggt ttgtccgcgg caaccaattg
     8221 acgataatta acccggcaat gggaaatcac ctgctgaacc ggcggttgta gttcctgtaa
     8281 taatttcgcc gctgcggcag ggttatcaac cgttgcatcc caatcgcgaa aaagcctttc
     8341 ctcttcctca acgcgcgaat taaacatgct gggatagaga caggcaaaaa ccatctcgcg
     8401 caagcgattc agatctttaa ctggtttcag caaaacatct tcaacgccca gacgtaacgc
     8461 tttggcaata tctgccatat tttcagtggc agatatcacc agaactgggg tctggtcgcc
     8521 tctgttacgt atatgctcca gcagtttaag cccgttcatt cgtggcatcg cgatatcaca
     8581 tatcatcagg tctggagtga aacctcccag caactcaagg gcatccaccc catcagccgc
     8641 cagtaccgtt gtcgctccca atgaggaaaa ccatgaatcc agaagcgagc gaaatacctg
     8701 ctcatcttca acaatgagaa tctgttttcc gaccaatggc tgcgtcatgt tctctcccct
     8761 gactggcttt actcaatagt ggcatgctat tgccacctgc gcctgtcaga attaacttaa
     8821 gtgtagataa aaattctggt caaatgttgg tgcgtaccaa cggcaaaagt tcgtccattt
     8881 tcctttccac tgccagctgt ccggccgcaa tggcagcgtg cgcgcgatgg aaatcaagcg
     8941 tagatatttg cgggcaaaca ggttgaatca gaatatcggg cggatcacct gccatgcggt
     9001 tccttttaag gcggttctcc agcacctgga tagaagtggt cataatctct gttgccgttg
     9061 gcgctgtcac cgcccgacgt gttgttatac tgcctaacct ttctttcaga cgcgcatgcc
     9121 acggcaaaga ttcaccattc tcgctatttt cttcactgac attaaaggag agcaaatctt
     9181 gttgcatcaa atgagcatcg tgctgcaggt cgaccgctat cacaatatca gcccccaatg
     9241 cacgcgtgag ggaaatagga attgggttaa ctactgctcc atcaaccagc cagtagccgt
     9301 tatgtgcaac aggtgccatg agtcctggaa tactgcatga tgcgcgaata gcaagatgga
     9361 gatcgccttc agtaaaccat aattcacgtc ccgtacttaa attggtggca acagccgcaa
     9421 agcgacggga acaattttcg atctctgttt ccggcattat ttcgcggcat tgattgaaga
     9481 cacgctcgcc gcgcagtaac ccaccgcgct gccaggagag atccatcagg cgtaaaacat
     9541 cccaataact gaaagaggtc acccaatctt ccagcgcaga taatcgatcg catgcatagg
     9601 cagcgcccac cagcgaacca attgaacatc ctgcaacgat atcaatttca atacccactt
     9661 tttttagcgc attaataacg ccaatatgcg accaacctct cgccgcgcca gatcccagcg
     9721 ccagccctat ttttatcttt ctcattattc ccgcaagatt cccctggaat gcaatcgtag
     9781 ccacatcgct actgctcggt taacatagtg ctactcaggc ggttaatacg ccgttattgt
     9841 ttccagggag attatttgtg tctcagcttt gtccctgtgg tagtgctgtc gagtatagcc
     9901 tatgttgcca cccttatgtg tctggtgaaa aggttgcacc tgatccagaa catctcatgc
     9961 gttcgcgtta ctgcgctttt gtgatgcaag acgcagatta tttaataaag acctggcatc
    10021 cctcttgtgg agcagcggcg ttacgtgccg aattgatggc cggatttgcg catactgaat
    10081 ggttgggatt gaccgtattt gaacattgtt ggcaggacgc cgacaatatc ggatttgtca
    10141 gttttgttgc tcgatttacc gaaggtggca aaacaggtgc aataattgaa cgttcgcgat
    10201 ttttgaaaga aaacggtcaa tggtactata ttgacggtac acgtccgcag tttggtcgca
    10261 acgatccctg cccttgtggt tcaggtaaaa aatttaaaaa gtgctgcggc caataatggt
    10321 tgacggtacg gtttagcaaa cactctcaac aaggtttttc cagcaatgca ttcactccaa
    10381 cgtaaagttc tgcgtactat ttgtccggac caaaaaggtc tgatcgcacg tattaccaat
    10441 atttgctaca agcacgagtt aaatatcgta cagaacaatg aatttgttga tcaccgtacc
    10501 gggcgctttt ttatgcgcac ggaactggaa gggattttta atgattccac cctgctggcg
    10561 gatctcgata gcgcattgcc agaaggctcc gtgcgtgagc tgaatcctgc cggtcgtcgc
    10621 cggatagtga ttctggtcac taaagaagcg cattgccttg gcgatttgtt gatgaaagcc
    10681 aattacggcg gcctggatgt cgaaatcgcg gcagttattg gtaaccacga tactttacgt
    10741 tctctggttg agcgttttga tattccgttt gagctggtaa accatgaagg gttaagccgc
    10801 aacgagcacg atcaaaagat ggcagacgcc attgatgctt ataaacctga ctatgtggtg
    10861 ctggcgaagt atatgcgggt attaacgccg gaatttgtgg cacgcttccc gaataaaatc
    10921 atcaatattc accattcatt cctgcctgcg tttatcggcg cacgtcctta tcaccaggcc
    10981 tatgaacgtg gtgtgaagat tattggcgca accgctcact atgtgaatga caatctggac
    11041 gaaggcccaa tcatcatgca ggacgttatt catgtcgatc atacctacac agctgaagat
    11101 atgatgcgcg caggtcgtga cgtcgagaaa aacgtcttaa gtcgtgcgct atacaaagta
    11161 ctggcacagc gcgtctttgt ttacggtaat cggacgatta ttctttaatc gccagcaaaa
    11221 ataactggtt acctttaatc cgttacggat gaaaattacg caaccagttc atttttctca
    11281 acgtaacact ttacagcggc gcgtcatttg atatgatgcg ccccgcttcc cgataaggga
    11341 gcaggccagt aaaaagcatt accccgtggt ggggttcccg agcggccaaa gggagcagac
    11401 tgtaaatctg ccgtcatcga cttcgaaggt tc
//
LOCUS       DAJVUP010000140        11385 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.140, whole genome shotgun sequence.
ACCESSION   DAJVUP010000140 DAJVUP010000000
VERSION     DAJVUP010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11385
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.140"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..911
                     /gene="gap"
                     /locus_tag="OQQ75_003293"
     CDS             <1..911
                     /gene="gap"
                     /locus_tag="OQQ75_003293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS1977521.1"
                     /translation="INDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVY
                     AEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNV
                     NDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVDGPRG
                     KDLRASRAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVSILGK
                     KATAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLV
                     KTVAWYDNEYGFVTQLIRTLEKFAKL"
     gene            complement(953..2393)
                     /gene="aldA"
                     /locus_tag="OQQ75_003294"
                     /pseudo
     CDS             complement(953..2393)
                     /gene="aldA"
                     /locus_tag="OQQ75_003294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310048.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
     gene            complement(2548..3390)
                     /locus_tag="OQQ75_003295"
     CDS             complement(2548..3390)
                     /locus_tag="OQQ75_003295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001027928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HCS1977522.1"
                     /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVLYQADCVILAG
                     NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATIL
                     ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALFNQAVERVHTAIVVQDPTMQRRTM
                     ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR
                     LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLRQKLPVCEPLV
                     CKRA"
     gene            complement(3662..7564)
                     /gene="hrpA"
                     /locus_tag="OQQ75_003296"
     CDS             complement(3662..7564)
                     /gene="hrpA"
                     /locus_tag="OQQ75_003296"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HCS1977523.1"
                     /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ
                     AIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET
                     GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF
                     SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP
                     RRPDLKIIITSGTIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ
                     AIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR
                     VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
                     ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
                     FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE
                     AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG
                     EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI
                     ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR
                     IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI
                     DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF
                     YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN
                     LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV
                     RRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKIT
                     FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE
                     QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK
                     LPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELN
                     DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK
                     RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK
                     EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG"
     gene            7765..8370
                     /gene="azoR"
                     /locus_tag="OQQ75_003297"
     CDS             7765..8370
                     /gene="azoR"
                     /locus_tag="OQQ75_003297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HCS1977524.1"
                     /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA
                     ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS
                     TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF
                     LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVAA"
     gene            complement(8421..9737)
                     /locus_tag="OQQ75_003298"
     CDS             complement(8421..9737)
                     /locus_tag="OQQ75_003298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310040.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2/dual specificity phosphatase
                     family protein"
                     /protein_id="HCS1977525.1"
                     /translation="MITERRNVLLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDI
                     PSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCG
                     FLLYPLKFSFIRPEVSGVTGWPFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAER
                     WRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIK
                     IALPYVVGAGSCIVLMELMVMIQLWWPVWLCWPVLSLLIIGRGYGGLGAITTGKDSQG
                     KLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGAFPRHIPAQNAVLDVTF
                     EFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSA
                     LVVAAWLLCYGHCKTVDEAISYIRARRSHIVLKEDHKAMLKLWENR"
     gene            complement(9727..11385)
                     /locus_tag="OQQ75_003299"
                     /pseudo
     CDS             complement(9727..11385)
                     /locus_tag="OQQ75_003299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415928.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional alpha/beta hydrolase/class I
                     SAM-dependent methyltransferase"
BASE COUNT         2843 a         3091 c         2707 g         2744 t
ORIGIN      
        1 ctattaatga tctcacttcc ccaaaaattc tcgcctacct gctgaaacat gattcaaact
       61 acggaccatt cccctggagc gttgatttta cggaagattc acttatcgtt gatgggaaaa
      121 gtatcgcggt ttacgccgaa aaagaggcta aaaatattcc gtggaaagcg aaaggtgcag
      181 aaatcattgt cgaatgtact ggcttttata cctccgccga gaaatcgcag gcgcatcttg
      241 atgctggtgc gaagaaggtg ttgatttccg cccctgccgg tgaaatgaaa actatcgttt
      301 ataacgtcaa tgacgacact ctggatggca acgacaccat tgtttccgtg gcgtcatgca
      361 ccactaactg tcttgcgccg atggccaaag ccttgcatga cagtttcggg atagaagtcg
      421 gcacgatgac gaccattcat gcctatactg gcacccagtc actggtggat ggcccacgtg
      481 gtaaagattt acgtgcttca cgcgcagcgg cagaaaatat cattccccac actacggggg
      541 cggcaaaagc cattggtctg gagatcccgg aactgagcgg caaactgaaa ggtcatgcgc
      601 aacgcgtgcc ggtgaaaaca ggttcggtca ctgaactggt atcgattctc ggaaaaaaag
      661 cgactgccga agaggtgaat aacgcactta aacaagcaac caccaataac gagtcatttg
      721 gttataccga tgaagaaata gtctcttccg atatcattgg cagccatttc ggttcggtgt
      781 ttgatgccac gcaaacggaa attaccgccg tgggcgattt acaactggtg aaaacggtcg
      841 cctggtacga taacgaatat ggcttcgtca cgcagcttat tcgcaccctc gaaaaattcg
      901 ctaaactctg acgcgcacag gcggaggaaa aaacctccgc ctcttttact cattacgact
      961 gtaaataaac cacctgggtc tgcagatatt catgcaggcc atgtttacca tctgcgccgc
     1021 caataccgga tttacgccat ccggcgtgga agccttgcat agcttcgaag ttttcacggt
     1081 tgatgtaagt ttcaccaaac ttcagccctt taatggcttt catcgcgacg ttcagatttt
     1141 gggtatagat ttgatgaggt caggccgtaa tcactgtcat tagccattga gatagcctct
     1201 tccagcgtgt caaatgcgac caccggcaga accgggccaa aggtttcctc atgcataatc
     1261 gacatttcct ggcgaacatc cagcagcaat gtcggcggat aataatatcc tttcccctct
     1321 accgctttgc cacccaacgc cactctcgcc ccttcttcta ctgcgcgcgc cactttttgc
     1381 tcaacccttt ccaacgccgc ggcgttaatc aacggcccca tcgcaatgtc gttgcgttca
     1441 gcggggttac caaattgaac cgcctgcatc gcttcaccca gccgattgac gaactgatca
     1501 taaatgcctt tctgtacata aacacgttct gcacagttac acacttgccc actattaatg
     1561 acgcgtgaat caacgatggc tttgactgcc agttcaagat cggcatcgtc cattacgata
     1621 gctggtgctt taccccccaa ttccagacac actttggtga tgtttttcgc cgcagtcgcc
     1681 atgatcttct cacctgcaga gacgctgcct gtcatactga ccattgcgac ctttgggtta
     1741 cccgccagtt cttgcccaac ggtttcacca cgccccagta caaggttaaa cacgccgcgc
     1801 ggaaggccta tttcatcgac gattttggcg aatgcaatcg cattgtttgg cgtaaattca
     1861 ctaggtttaa tgacgatggt attaccggtc aaaagagcgg gagccatttt gcgggcaatg
     1921 aggaagaacg ggaagttcca cggcagaatg ccggtagtca caccaagcgc acgtttaaac
     1981 aaaagaatat tttctcctgg acgatcgctt tgaataatct cgccctcgta acgccgtgcc
     2041 cactccgcca tgtaatcgat atagtcggca gtaaaagcca cttcgacttc agccagctgc
     2101 tggatcttgc ccccttcttc aacaatcagc gcactgattt cactggcgcg ttcgcggatc
     2161 ccggcggaga ttttgcgcaa ccaactggcg cgttcaatag caggcaacgc ttcccattct
     2221 ggttgtgcac gttctgctgc atcgattgcc ttacgggcat cctcggcctg accatcgggt
     2281 atgcgggaaa tgacagcctc tgtagcaggg tttaccacat caatccatgc gtctccacgc
     2341 caggtaacaa actgtccatc gatatacata ggatgttgaa cgggtactga catgggcgac
     2401 tcctgtgatt tatatgtttg ttcttggtaa atacattgtt aattaacatc aatcatcata
     2461 gagacggcat cgtgaaagga caattctgtg aagggcttca taaaaacaag tgtaaaagga
     2521 ataaaaggca gaaataaaag tcaggagtca tgcccgtttg caaacaagtg gttcacaaac
     2581 gggcaatttt tgacgtaacg agcgactttc catcgcctcg atgagcaccg catcgtgttt
     2641 aagcgtttgc catgcatgga tgacttctgc cggaaaatca acgtgaacga taaaatctcg
     2701 cccgcgggga ccgtagccat cgctatcatc gcgtaaacgc ggcagctcgc cagtgagtag
     2761 tgagagataa cgctcaaccg gccataatcc ttgtaactga ttaataaaga ttacactgtc
     2821 tgcgttattt cctaactgag gaacgaatcc gggataactt aaccagcgtg gcgcatcggg
     2881 attgtcccca gtcatacggc ggaacgtcgc catcgtgcgc cgctgcatgg tggggtcctg
     2941 aacaacgata gccgtatgaa ctcgttctac ggcctgatta aatagcgcga tgctaaagcg
     3001 tgcgttttca ccgcagtttg ttgactggtc ttcaatccag attttttcat gcggaatgtg
     3061 ccagaactga tgagcgatat ccgccaggat ggtcgcttct gctctgccag tggtgcggat
     3121 agtgttgtag tgcggatgct gtgcgatggc gctatacaaa aaagttgtcg agtgaccgat
     3181 accaccacta atcagtaaag gaatttgctg atcgcgagca atcttacatg ccgcgtcgat
     3241 agtcggcata accgcattgc ctgcaaggat cacgcaatcg gcctgataca gcacctcacc
     3301 ggagaaatca tcctgcgcca gccactgtcc gataacattt atggcatcta tagttgccgg
     3361 cgaaagcgtc ggaaacgggg taatgttcat ggttcctcct tatcgttccc ttaagaatac
     3421 tgcgtgagat aatagtgaga agctgagcac tctgaaagga ggaagtcgta tgtccttaac
     3481 cgccactccg caagcctgac atatctttta aggaaatgct gtagataaac attattcatc
     3541 ttgcagcaga gaattgtatt tttctgaatt cctgaatttt tacccttacc gttttagaat
     3601 taataaaaaa cccggcgcta aatgcttacc gggttttaga tttattaggc aaatagcagg
     3661 gttaaccgct aatctgctcc atcgcctgca aaatacgctt atctgaaatc ggataaggcg
     3721 taccaagttg ttgagcgaag taactaacgc gcagctcttc tatcatccaa cggatctctt
     3781 tcacgtcttc atcctcacga cgtgcaggcg gcagtttgtt gatccattgc tgccacgcct
     3841 gctggacgtt ttcgactttc agcatctgtg cacgatcgcg atgtggatca accgccagtt
     3901 tttccagtcg tttttcaatc gcctgcaaat atcgcagcgt gtcgcccagc cgtttgaagc
     3961 cgttaccagt gacaaaaccg cgatatacca acccgcccat ctgcgcttta atgtcagaaa
     4021 gccccagtgc catggtcata tccacccgcc ctttcagacg tttgttgata ttgaacactg
     4081 ccgtaagaat ttgctcgacc tgcttcgcaa tatctaccac cgtgtcgttc agttcggcac
     4141 gcactttctc atgcagcgca gcaaagcctt cttccgtcca gaccgggcca ccattggcgt
     4201 cgatcagttg atccacaccg caggagatac agtcgtcgat cagctccagc actttgccat
     4261 acgggttgaa gtacagtccc agcttggctt tgttcggtaa cttttcatgt aaatacttga
     4321 tcggcgaggg aatatttagc agcagtagac ggcgaagacc attccacatt gcctgttttt
     4381 gctccagcgg gttatcaaac agtttgatcg ccacgctgtc gcgttcatcc accagcgccg
     4441 gccacgcctt cactttatag ttgccacgct tctgttcgta actttccggc agctgaccaa
     4501 aactccagat atgtaagccg ctctgctcga taccgtcatc cgccaccgcg gacagcgttt
     4561 cctgcacttt gcctttcagc gcatctttca gatcttgtag cgagcgccct tcttttagct
     4621 tcttgttttt gtcatccacc acgcggaagg tgattttcag gtgatcgggc acctgatccc
     4681 agtgccagtc ttcgcggtca acggtaacgc cggtcatccg ccgtaactcg cgctcaaggc
     4741 tgtcgagcaa cggtaactcc agcggtgtga cgcggcctaa aaacgcttcg gcgtagtttg
     4801 gtgcaggcac aaaattacgg cgtaccggtt tcggcaacga tttaatcaga gcaatcacca
     4861 attcgcggcg cagaccgggg atctgccatt caaacccgct ttcctcaacc tggttaagta
     4921 acggcagcgg aatatgtacg gtcacaccgt ccgcgtctgc gcctggctca aactgatagc
     4981 tcaaacgcag cttgagattg ccctgatgcc agaagttcgg gtaatccagc ttgctgattt
     5041 tttccgcccc ttctttgatc aacatgctct tttcaaagtt gagcaaatca ggcgtttcgc
     5101 ggctgacttt tttccaccag ctatcgaagt gacgagcgga gattacatcg tggctgatgc
     5161 gctggtcgta gaactcaaac agcgtttcgt catcaaccag aatatcgcgg cgacgtgatt
     5221 tgtgttccag ctcttccact tcggcccgca gtttcaggtt ttcacggaag aatgcgtgac
     5281 gcgtctgcca gtcaccttcc accagcgcat ggcgaataaa gagttcacga cataacgccg
     5341 gatcgatctg gctgtagttg accttgcgcg cggcaacaat cggcaaacca taaacagtga
     5401 ctttttccgt tgccatcacc gcgccctgcg cccgttccca gtgcggttcg ctgtaggtac
     5461 gtttaatcaa atgctgagcg acaggctcca cccattccgg gtcgatacgc gcagcaatgc
     5521 gcccccacag gcggctggtt tctaccagtt ccgccaccat tacccatttc ggcggttttt
     5581 tgaataaacc agaaccgggg aagatggaga aacgcgcgtt acgtgcgccg gtatattctt
     5641 gtttatcggc atctttcatg ccgatatggg aaagtaaacc cgtcagcaac gcaatgtgaa
     5701 tttcgcgata ctccgccggt tcgctgttaa ccggaatgcc aagttctttc accacctgac
     5761 gcaactgggt gtagatatcc tgccattcgc gcacgcgcag atagttgaga taatcggtac
     5821 gacacaggcg acggaaggcg tttgaagaaa gcgccttttg ctgctcgcca agataattcc
     5881 acagatttac aaacgcgagg aagtcggatt ctttgtcgtg gaagcgacga tgtttttcgt
     5941 ccgatgcctg ctgtttgtcc atcggccgct cacgcgggtc ctgaatggag agcgcggacg
     6001 tgataatcat cgcctcacgc acgcagccat gtttctgcgc ttccagcacc atacgcgcca
     6061 gacgaggatc gaccggcagt tgcgagagct ggcgaccgag cggcgtcagt ttataggcgc
     6121 tggcctgttc atccgtggtg atcgcgccca gttcttcgag cagacgcacg ccatcctgga
     6181 tattgcgttt atccggtgct tcgacaaacg ggaacgcagc gatatcgccc agccccagcg
     6241 cggtcatctg caaaataacc gaggccaggt tggtacgcag aatctccgga tcggtaaact
     6301 ccgggcgcga gaggaaatcg tcttcggaat agagacgaat acagatccct tcggacacac
     6361 gaccacaacg gcctttacgc tgattggcag acgcctgtga aatgggttca atcggcaaac
     6421 gctgcacttt ggtgcgatag ctgtagcggc tgatacgcgc cgtaccgggg tcgataacgt
     6481 atttaatccc cggtacagtc agcgaggttt ccgcgacgtt ggtcgccagc acaatgcgtc
     6541 gcccgctgtg cgactggaac acgcggttct gttcgctatt cgaaagccgc gcataaagcg
     6601 gcaagatttc ggtatggcgt aagttcagct tgttcagcgc atcggcggta tcgcgaattt
     6661 cccgctcgcc gctcataaag atcagaatgt cgccagggct ttcctggctc agttcgtcta
     6721 cggcgtcaaa aatcgcctgc aactgatcgc gctcggtgtc atcggcttct tcaacaatcg
     6781 ggcgatagcg cacttccacc ggataggtcc gaccggagac ttcgataatc ggcgcattat
     6841 taaagtggcg agaaaagcgt tccgggtcga tagtcccgga agtgataatg atttttaggt
     6901 caggacgccg cggcagcaac tctttcaaat agccgagcag aaaatcgata ttcaggctgc
     6961 gttcgtgtgc ttcgtcaata atgatggtgt cgtactgcat cagcaggcgg tcttgctgga
     7021 tctccgccag caggataccg tcggtcatca gcttgaccat cgtgttatca cttacgtgat
     7081 cgctgaaacg cactttgtaa ccgatgcaac cgcctggctc cgttttcagc tcttccgcaa
     7141 tacggttcgc caccgttctt gccgccagac gacgcggctg ggtatggccg atcagtcctt
     7201 taatcccgcg ccccagctcc atacagattt tcggtagctg ggtcgtttta ccggaaccgg
     7261 tttccccggc gacgatcacc acctggtgat cacgaatcgc ttcgagaata tcctgttttt
     7321 tctgactaac tggcaaattg tccggataag tgatttccgg tcgtgccgct tcacgcagca
     7381 ggactttccc tgccgcctgg tcaatctctt tcgccatctc ctggaaaatg gcctgttgtg
     7441 catcaggatt tttaaccttc ttaacaccat gcagacggcg agaaaaacgc agtctgtcgc
     7501 gcagcatcaa cgaatccagc cgctgctgca aagcagtaaa ggtcaatttt tgttgttctg
     7561 tcataacgtt agtgggcagt agtctgcctg attaattttc ttttaaatga tagatataga
     7621 gtaccacatc gcggctttct atgcgttgtt caataaattc gaacataggc ttcgatttat
     7681 tgcgctatct ctgtggcagg attgtgaata aagtgtcagc aagcaacggg gcatcgccaa
     7741 ttcaaacatc tataaggaaa caccatgagc aaggtattag ttcttaaatc cagcatcctg
     7801 gcagggtact ctcagtctaa tcagttgtcc gattattttg ttgaacaatg gcgcgaaaag
     7861 cactccgctg atgaaatcac cgttcgcgac ctggctgcaa atccgattcc ggtactggat
     7921 ggcgaactgg ttggcgctct gcgtccgagc gatgcgccgc tgactccgcg tcagcaggaa
     7981 gctctggcgc tttccgatga gctgattgcc gagctgaaag cccacgacgt tatcgttatt
     8041 gcggcaccga tgtataactt caacatctca actcagttga aaaactattt tgacctggtt
     8101 gcacgcgcag gcgttacttt ccgctatacc gagaacggtc cggaaggtct ggtaacgggt
     8161 aaaaaagcca tcgttattac cagccgcggt gggatccaca aagatggacc aacggacctg
     8221 gtgacgccgt atctgtccac gttcctcggc tttatcggca ttaccgatgt gaaatttgtc
     8281 ttcgccgaag ggatcgcata cggtccggaa atggcagcga aagcgcagtc tgacgcgaaa
     8341 gcggccatcg acagcattgt tgctgcataa ccggacacga tcttgatgtg gactgtagtt
     8401 cagtccacat ctcaatccac ttacctgttt tcccataatt tcagcatcgc tttgtgatct
     8461 tccttaagca caatatgcga acgtctggct cgaatataac taatcgcttc atcaacggtt
     8521 ttacagtgtc cgtaacataa caaccatgcc gccactacca gcgcactgcg cgataatccc
     8581 aacgcgcaat ggaccagaac gctgccttgc tcttcgcgta atgtttccag catcgccacg
     8641 gcctgtcgga gctccccctc ttccggaacc accagatcca gcatcggtac acagaaatag
     8701 agtcgatctt ttgtcgctcg tccccgaggg aattcaaagg tgacgtccag aaccgcattc
     8761 tgtgccggaa tatgtcgtgg aaacgcccct aaataaacac cagcagtaat tttgctcacc
     8821 ggctccaggc gacgacaaaa ccaacgcata gacagccaca tcccgatgcg ccagggcaat
     8881 gtcagccagt aaacggcggg cgggagtttc ccctgactat ctttccctgt tgttatcgcg
     8941 ccaagcccac cgtacccacg gccaataatg agtagcgata atactggcca acataaccag
     9001 actggccacc ataactgaat catcaccatt agctccatca acacaatgca cgagcccgcg
     9061 cctacgacat atggcagtgc tattttgatt cgacgttgat caggtttctg ataattccaa
     9121 cgacgatcga cgggcaccat ccagtcaatc aacataccta ccgccagccc tgtgatgaca
     9181 tcaataaaat gatgctgcca ggtcgtcaga gtagaaatag cgatgagtaa aaaccatccg
     9241 ccacagactt tacgccacct ctcagccaga tgctgacgaa agtgacgcca aagtagccag
     9301 cagagaataa tatgcagcga aggagactgg ttataaggca gatcaaacag ttcaagttgc
     9361 gaaaatggcc atcccgtcac cccactcact tcaggacgga taaaactaaa cttcagcgga
     9421 tagagcaaaa aaccgcagca ggccattacc gttgccagaa taagccggtg gacaagtcgg
     9481 cgctgttcga atgtcgtgct acaaacgaac agcgaaaatc catataaaag atccagactc
     9541 cagtaaggaa caatagtcca gggaagaaaa gggatcgccg tttcccaacc gaatacctga
     9601 ctggggatat catggctgtt aaggtcctga accgcggtga actgattaag agatccatag
     9661 gtgaagaaaa aaaacggggc cagcaacaat aaccagccag cgccttgtag caatacgttc
     9721 cgacgttcag ttatcacgac gcaccgccat cgaaaccgta aaaatacccc actcatcaat
     9781 ccgttgtgtg catttatcaa atccggcatc acgcacgagt gaatccatct ccccttgcga
     9841 acgcacgcgc attacccacg gtttaccatc tttatgactg gttaacaccc cggcaatcat
     9901 ctccagttga gggtgccacg gctgcccggt gtagatgaga atgccgaccg gttcgatggc
     9961 attggcaaga cctgcgagtg agttttttac ctgctcattt tcgggaaaaa gctcatacag
    10021 tccagagaca attgccagcg taggccgcgg agttaacgcg ctgagttcct ccgggttaaa
    10081 cgcatcgccc tgttcaaaac gcacccgccc agacattccc cgttgggcaa tcatctcttg
    10141 cccctgtgca acatttaact cgctgtaatc acgtaacaaa atatcgctta cggcaggctc
    10201 gtttgccagc gcatccagta catagcgccc atgccctgcg gcaatgtcaa ccacgcggac
    10261 ggctaaacct ttggcgtgga gatcggcaac ggcttgttta atcagtattt gtaaatgggt
    10321 tttgcgctgg cgaataccgc gccagccaac actgttcagg tagattttgt cgattaagcg
    10381 cccgaatgcg ttactacctt gcggttgatt ttgatagaca taatccagcg aactgcctga
    10441 atcaaagccg gtgctcattc cgagatgcag gcccgcagag tgcgtcccga acaatttcat
    10501 cgcctttcgc ataaagcgat acgctaaatc aaccggcgat aatagcacgg gtccaccaga
    10561 aagtagccgc cattgatccg ctgatggtcc tgtgcagtct tcatgctgat aatcaaattt
    10621 ttgcgatttg ttagcatata aacgactaat aaagctttgc attttttcaa atgccagcgc
    10681 cctgttctct tcacccaacg tgtcgtgata aaagcctggc agcagatgca gctctttcag
    10741 agggctacgt aatctctgat aaaaatcaat ctgcggttgg cgatgcacca catagtcatc
    10801 acctgatatc agaagttgcg tggggagcgt aatcgccgcc gcatctctaa taatacgttc
    10861 agacgtttta tagagatcga gcaagatatt gacggcaatc gcccgtgtga tcagcggatc
    10921 attattgaaa ctcgccaccc gttgccgatc gtgggtcaaa tagcgtcctt tcacatagga
    10981 attaataaaa aacagaccac gcagacgatg ccataacgcc agcgcaggac gtgccagcgg
    11041 cacatacaat ttaaccttaa aggccggaga agccagcacc agcccgcgaa ttgcaggcgc
    11101 ataatcatga acctatgtgg caaccagcac tgcgccgacg ctttgcgcga tcacaaccac
    11161 ctcttccagt ccaacctagc tgtcgctggc agcaaaacgg acaaattcat cgacatcctg
    11221 cactgaacgc gcaagagatg ggctataacc acgcggcccc gaagtttttc catgcccccg
    11281 agcatcccat gcataaaaag cagtatctgg catcgccagt tcatcaacga tatgttgtag
    11341 acgaccagaa tgttcatggc cacgatgaaa taagacaatg acctt
//
LOCUS       DAJVUP010000141        11330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.141, whole genome shotgun sequence.
ACCESSION   DAJVUP010000141 DAJVUP010000000
VERSION     DAJVUP010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.141"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            86..523
                     /locus_tag="OQQ75_003300"
     CDS             86..523
                     /locus_tag="OQQ75_003300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001524956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HCS1977526.1"
                     /translation="MKTIKPESIALFCLLSGDVDLAKHLADILPITCFVGEDWQQDFQ
                     PLDGGPVQSLSDSYSDYSVLLLIAAESEISVPEWLAHSEGTTVILIAEHNARLLTGPA
                     GGAVALIHYLNEICHSRETAVNDAFCRTLTRGSLAIPQCHLLS"
     gene            657..1201
                     /gene="cobU"
                     /locus_tag="OQQ75_003301"
                     /pseudo
     CDS             657..1201
                     /gene="cobU"
                     /locus_tag="OQQ75_003301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416497.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
     gene            1198..1941
                     /gene="cobS"
                     /locus_tag="OQQ75_003302"
     CDS             1198..1941
                     /gene="cobS"
                     /locus_tag="OQQ75_003302"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HCS1977527.1"
                     /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL
                     GAISGLVFMVLQAWCGVPLAALFSVLVLALMTGGFHLDGLADTCDGVFSARSRDRMLE
                     IMRDSRLGTHGGLALIFVVLAKILVLSELALRGEPILALLAAACAVSRGTAALLMYRH
                     RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL
                     LKRTLGGQTGDTLGAAIELGELVFLLALL"
     gene            1953..3032
                     /gene="cobT"
                     /locus_tag="OQQ75_003303"
     CDS             1953..3032
                     /gene="cobT"
                     /locus_tag="OQQ75_003303"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HCS1977528.1"
                     /translation="MQTLADLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALAI
                     QLAGMPGLNGVPHVGKKAVLVMCADHGVWEEGGAISPKEVTAIQAENMTRGTTGVCVL
                     AAQAGANVYVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRHQAEKLLLDVICYT
                     RELAKNGVTLFGVGELGMANTTPAAAIVSTITGRAPEEVVGIGANLPTDKLANKIDVV
                     RRAITLNQPNPQDGVDVLAKVGGFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALAAC
                     QMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACA
                     IYNNMGELAASNIVLPGNTTSDLNS"
     gene            3094..4029
                     /gene="ldtA"
                     /locus_tag="OQQ75_003304"
     CDS             3094..4029
                     /gene="ldtA"
                     /locus_tag="OQQ75_003304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1977529.1"
                     /translation="MMRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVP
                     DHNTQPLETFAAQNGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVN
                     VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYA
                     KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY
                     LFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLR
                     AFISGQEVDVNRANAALQRRSGMPVPISSGSRQMF"
     gene            complement(4085..4160)
                     /locus_tag="OQQ75_003305"
     tRNA            complement(4085..4160)
                     /locus_tag="OQQ75_003305"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4125..4127),aa:Asn,seq:gtt)
     gene            4487..4858
                     /locus_tag="OQQ75_003306"
                     /pseudo
     CDS             4487..4858
                     /locus_tag="OQQ75_003306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416493.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            4857..5291
                     /locus_tag="OQQ75_003307"
                     /pseudo
     CDS             4857..5291
                     /locus_tag="OQQ75_003307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310806.1"
                     /note="Catalyzes the hydrolysis of AMP to form adenine and
                     ribose 5-phosphate using water as the nucleophile;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
     gene            5634..6350
                     /locus_tag="OQQ75_003308"
     CDS             5634..6350
                     /locus_tag="OQQ75_003308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1977530.1"
                     /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN
                     TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN
                     VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGSDPDHIFEILLEAEVDVRD
                     VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL
                     VDALEDDDDVQKVYHNVANL"
     gene            complement(6806..6881)
                     /locus_tag="OQQ75_003309"
     tRNA            complement(6806..6881)
                     /locus_tag="OQQ75_003309"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6846..6848),aa:Asn,seq:gtt)
     gene            complement(6982..8625)
                     /gene="yeeO"
                     /locus_tag="OQQ75_003310"
     CDS             complement(6982..8625)
                     /gene="yeeO"
                     /locus_tag="OQQ75_003310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416491.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic metabolite efflux MATE transporter YeeO"
                     /protein_id="HCS1977531.1"
                     /translation="MLRHILTAKNLLSNPIFKFPNCLPFLSTVCCICRQFVGENLCSF
                     ADSPSLFEMWFHFLQLRSALNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIF
                     MENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLG
                     KRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKVLALTYLEL
                     TVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFV
                     GAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVE
                     SVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVG
                     QIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALF
                     MPIWSASWGLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMF
                     ADWAVRAVLFYWRMVTGRWLWKYPRSEPQKCEKKPVVSE"
     gene            8630..8705
                     /locus_tag="OQQ75_003311"
     tRNA            8630..8705
                     /locus_tag="OQQ75_003311"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8663..8665,aa:Asn,seq:gtt)
     gene            8867..10129
                     /locus_tag="OQQ75_003312"
     CDS             8867..10129
                     /locus_tag="OQQ75_003312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1977532.1"
                     /translation="MSLNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRF
                     SGKESRVSLGAYPLVSLAEARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVA
                     LAWHKTNKKWSPDYAARILASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEV
                     ASRTRQQLCNIMRYAVQQGFTENNLAQHLEGVTAPPVKNHYPALPLERLPELFERIGD
                     YQQGRQLTRLAVVLTLHLFIRSSELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRG
                     AKMRTPYIVPLSRQAIAILKQIKEISGHLELVFPGDHNPYKPMSENTVNRALRLMGYD
                     TKTDVCGHGFRTMACSALVETELWSRDTVERQMSHQERNSVRAAYIHRAEHLDARTAM
                     MQWWSDYLDVSREGYVAPYIYARRHKAA"
     gene            complement(10848..>11330)
                     /locus_tag="OQQ75_003313"
     CDS             complement(10848..>11330)
                     /locus_tag="OQQ75_003313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase domain-containing protein"
                     /protein_id="HCS1977533.1"
                     /translation="MAAALELSRLMGLRSQEVVQSAQSLRTWKQSLERGEPRLTVVFG
                     TKGGRPRETVILDAVAIRKALDNALVVAEDRHGRLIDKPDLKSAMKYWHSQASRLGLT
                     GTYSPHSLRYAWAQDAIRHYLAQGFSEKEALAMTAMDLGHGDGRGRYVAQVYGRKDTD
                     "
BASE COUNT         3009 a         2646 c         2760 g         2915 t
ORIGIN      
        1 gggctgcatt caaggtgtgg caatattgtt tcatggctta tcaaccagag cgccattaca
       61 ggaaattaag tggagggcga gaggcatgaa aacgataaaa cccgaatcga tagctctttt
      121 ttgcctctta tctggagatg tggatctggc gaaacatctg gctgatatat tgccaataac
      181 ctgttttgtt ggtgaggact ggcagcaaga tttccagcct cttgatggtg ggcctgtgca
      241 atcgttatca gattcgtata gcgattattc agtgctgcta ttgatagcag ctgaaagcga
      301 gatatccgta ccagaatggc tcgctcattc tgagggaacg acggtaattt tgattgcaga
      361 acacaatgcc cgtttgctga ctggtccggc tggtggggct gtagcattaa tccattatct
      421 gaatgaaatc tgtcattcca gagaaaccgc tgtcaatgac gcattttgtc ggacgttaac
      481 acgaggaagt ctggctattc cgcaatgcca tcttctttcg taatggattg agaatgctgg
      541 atttttaatt atattacgcg cagtattaat cgcgtaaatg ttttgcggtc agcaacggtg
      601 ggggatccat tgttctgttc aatgaatacc atcatacaat tgaatcagga gtcggtatga
      661 tgatttcggt gacggggggc gtacggagcg ggaagagtcg ccacgcagag gcgcttattg
      721 gggactcttc acaggttctg tatacgccac ctcgcaaatc cttgatgatg agatggctgc
      781 acggatagaa catcatcggc aaggccgccc gacgcactgg cacacagtgg agcgctggca
      841 acatcttgat gaattaattc atgcagacat taacccgcat gaggctgtat tgctggaatg
      901 cgttaccacc atggtgacta atctgttgtt tgattatggc ggcgataaag accctgatga
      961 atgggattat caggcgatgg aacaggcgat taatgctgag attcagtcgt tgattgctgc
     1021 ctgccaacgt tgtcccgcaa aggttgtatt agtgactaac gaagtgggaa tggggattgt
     1081 gccggagagt cgtctggcac gacattttcg tgatattgcc gggcgggtaa atcagcagct
     1141 ggccgctgcg gcaaatgaag tatggttggt ggtttcgggt attggagtaa aaatcaaatg
     1201 agtaaattat tttgggcgat gctctctttt attacgcgtc tgcctgtacc gcgtcgctgg
     1261 tcccagggac tggatttcga gcattattct cgcggtatta ttacttttcc tttaattgga
     1321 ttattgcttg gcgcgattag cgggctggtc ttcatggtgc tgcaggcatg gtgtggcgta
     1381 ccactggcgg cactgtttag cgtacttgtg ctggcgctga tgaccggggg attccacctg
     1441 gacggcctcg ccgatacctg tgatggcgta ttttctgcac gtagccgcga tcgcatgttg
     1501 gaaatcatgc gtgatagccg tttaggcacc cacggcggtc tggcattgat ttttgttgta
     1561 ctggcaaaga ttctggtatt aagcgagttg gctctgcgtg gcgaaccgat ccttgcattg
     1621 ctggcggcag catgtgcggt cagccgcggg actgccgcat tattgatgta tcgtcatcgt
     1681 tatgcccggg aagaaggact tggcaatgtg ttcattggca aaattgatgg gcgacaaacc
     1741 tgcgtcacac tcggcttagc cgctattttt gctgccgtat tattgccggg tatgcatggt
     1801 gtggctgcta tggtggtgac gatggtggcg attttcatcc tcggtcagct tctcaaacgt
     1861 acgctgggcg ggcaaaccgg cgatacgctg ggagctgcta tagagcttgg tgaactggtc
     1921 ttcctgctgg cactgctata aagagacgtg acattcaaac acttgccgat ttactgaata
     1981 cgatccctgc tatcgatcct gccgctatgt cgcgtgcaca acggcatatc gacgggttac
     2041 tcaaacctgt tggtagcctg ggaaggctgg aggcgcttgc catacaactg gcaggaatgc
     2101 cggggttgaa tggcgttccg catgtgggca aaaaagcggt actggtcatg tgtgccgatc
     2161 acggcgtctg ggaggaaggg ggcgctattt ccccaaaaga agtgacagcc attcaggctg
     2221 aaaatatgac ccgcggaaca accggcgtgt gtgtgctggc agcacaagcg ggcgctaacg
     2281 tctacgtaat tgatgttggt attgatactg ctgagcctat ccccgggctt atcaacatgc
     2341 gtgttgctcg aggtagtggc aatattgctt cagctccggc aatgagtcgc catcaggcag
     2401 aaaagttgct tttggacgtc atatgttata cgcgggagct ggcaaaaaac ggtgttacgc
     2461 tgtttggtgt aggtgaactg gggatggcaa acacgacacc ggcagcggca atagtcagca
     2521 caatcactgg ccgggctcct gaagaagtgg ttgggattgg cgcaaacctg ccgacagata
     2581 aactggctaa taaaattgat gttgtgcgcc gggcgattac gttgaatcaa ccaaatccgc
     2641 aggatggcgt tgatgtcctg gcaaaagtgg gtggatttga tttggtcgga atggctggcg
     2701 tgatgttagg cgctgcgtcc tgcggtttac ccgtgttgct ggatggattt ctttcttatg
     2761 ctgctgcgct cgcagcctgt cagatgtctc ctgcaatcaa accgtatctc attccttctc
     2821 acctgtcggc agaaaaagga gcgcgtatag cgctgtcgca tttggggctg gagccttatc
     2881 tcaatatgga gatgcgttta ggtgagggga gtggcgcagc tctggcgatg cccatcatcg
     2941 aagctgcctg tgcgatatat aacaacatgg gcgaacttgc tgccagtaat attgttctac
     3001 cggggaatac gacttctgat ttgaacagtt aaaaacgaaa agtctgataa aagctatact
     3061 taacggatag ctttcgcgac ttaggaaagg gacatgatgc gtcgtgtaaa tattttttgc
     3121 tcatttgctc tgctttttgc cagccatact agcctggcgg taacttaccc attacctcca
     3181 gagggtagcc gtttagtggg gcagtcgtat actgtaactg ttcctgatca caatacccag
     3241 ccgctggaga cttttgccgc acaaaacggg caagggttaa gtaacatgct ggaagcgaac
     3301 ccgggtgctg atgttttctt gccgaagtcc ggctcgcaac tcaccattcc gcagcaactg
     3361 attttgcccg ccactgttcg taaagggatt gtggttaacg tcgctgagat gcgtctttat
     3421 tactacccac cagacagtaa tactgtggaa gtctttccta ttggtatcgg ccaggctggg
     3481 cgagaaaccc cgcgtaactg ggtgactacc gttgaacgta aacaagaagc tccaacctgg
     3541 acgccaacgc cgaacactcg gcgcgaatat gcgaaacgag gggagagttt gcccgcattt
     3601 gttcctgcgg gccccgataa tcccatgggg ctgtacgcga tttatattgg caggttgtat
     3661 gccatccatg gtaccaatgc caattttggt attgggctcc gggtaagtca gggctgtatt
     3721 cgtctgcgca atgacgatat caaatatctg tttgataatg ttcctgttgg gacgcgtgtg
     3781 caaattatcg accagccagt aaaatacacc actgaaccag atggctcgaa ctggctggaa
     3841 gttcatgagc cgttgtcgcg caatcgtgca gaatatgagt ttgaccgaaa agtgccattg
     3901 ccggtaaccc catctttgcg ggcgtttatc agcgggcaag aagttgatgt aaatcgcgca
     3961 aatgctgcgt tgcaacgtcg atcgggaatg cctgtgccaa ttagttctgg ttcaagacag
     4021 atgttttaag agcgttggta attagaaagc aaaaagcctg ctagaaagca ggcttttttg
     4081 aatttggctc ctctgactgg actcgaacca gtgacatacg gattaacagt ccgccgttct
     4141 accgactgaa ctacagagga atcgtgtgaa cggggcgcat attaatggca gtgcatggtg
     4201 atgtcaaagg gtgaaatgca tttttttgtt tgtttgctgt caatttcaac aaagtggtga
     4261 gctttcaatc ttattgggta atgaaccatc gtggtgcata ccctcctttt atagggcagg
     4321 ggaacgcgac agctgattaa aggagcaaat gacgaatcta tcataatctc ttatttgaca
     4381 gttggttagc ttgtacatca acgccaaaat aaaactggca agcatcttgc aatctggttg
     4441 taagtaatgg cggcacttgg gccgattctt aaaaaccgga ggcaacatga acttcagacg
     4501 cctgaaatac ttcgtaaaaa ttgtagatat tggtagcctg acccaggctg ctgaagtatt
     4561 gcatatcgca caaccagcgc tcagccagca ggttgccaca ctggaaggtg agttaaatca
     4621 acaacttttg atccgtacaa agcggggcgt tacgccaaca gacgccggaa aaattctcta
     4681 tacccatgcg cgggccattt tacgtcagtg tgaacaggcc caactggcgg tgcataacgt
     4741 tggtcaggca ttatcggggc aagtctcgat tggctttgca ccaggaaccg ctgcgtcatc
     4801 catcaccatg cccttattac aggcggttcg cgctgaattt ccggagatcg ttatctatcc
     4861 cgagcattgc tgaagtgcaa cgtgcgcttt atgacgccac caagctggtg agcggcaggc
     4921 ccggtgagga agtcaaacag cggctacgta ctggtactgt ggtaaccaca gatgacagga
     4981 actgggaatt acgttactca gcttctgcac ttcgttttaa cttaagccgg gccgtagcaa
     5041 ttgatatgga aagtgcaacc attgccgcgc aaggatatcg tttccgcgtg ccatacggga
     5101 cactactgtg tgtttcagat aaaccgttgc atggcgagat taaacttccc ggccaggcta
     5161 accgttttta tgaaggcgct atttccgaac atctgcaaat tggcattcgg gcgatcgatt
     5221 tgctgcgcgc agaaggcgac cgactgcatt cgcgtaaatt acgaaccttt aatgagccgc
     5281 cgttccgata ataagttctg aaccttctta tcagaaatag atgtgaagga gtaagtaaga
     5341 cacctggcaa atagcctgca ataatcgtgg gctgtttgct tccttgggcg gatacgtgtt
     5401 ttattatcgt cttaatgatt tccacatatt aaaagcaagt atgctttcaa aacacaatta
     5461 taaaaaatcc cgccaacaat ataagttttt ataaaattaa atataagatt atggctttag
     5521 aatattttta tttctaatag acgagatttt tcctgttatg atataatatg ccgaattaac
     5581 acatgttaac gatttaccag taatgtaaat aaattttcga ggagatcatt ccagtgggac
     5641 gtaaatgggc caatattgtt gctaaaaaaa cggctaaaga cggtgcaacg tctaaaattt
     5701 atgcaaaatt cggtgtagaa atctatgctg ctgctaaaca aggtgaaccc gatccagaat
     5761 taaacacatc tttaaaattc gttattgaac gtgcaaagca ggcacaagtt ccaaagcacg
     5821 ttattgataa agcaattgat aaagccaaag gcggcggaga tgaaacgttc gtgcagggac
     5881 gttatgaagg ctttggtcct aatggctcaa tgattatcgc cgagacattg acttcaaatg
     5941 ttaaccgtac gattgctaac gttcgcacaa ttttcaataa aaaaggcggc aatatcggag
     6001 cggcaggttc tgtcagctat atgtttgaca atactggtgt gattgtattt aaaggatcag
     6061 accctgacca tatttttgaa attttacttg aagctgaagt tgatgttcgt gatgtgactg
     6121 aagaagaagg taacattgtt atttataccg aacctactga ccttcataaa ggaatcgcgg
     6181 ctctaaaagc agctggaatc actgagttct caacaacaga attagaaatg attgctcaat
     6241 ctgaagttga gctttcccca gaagatttag aaatctttga agggcttgtt gatgcccttg
     6301 aagatgacga cgatgtacaa aaagtttatc ataacgtcgc aaatctctaa ttatatatta
     6361 aagaaatctg tctttatggc agatttcttt aatctcatat aatccttata aaaaatataa
     6421 tgttcaactc gtcatattgc ttataaaaaa tcctcgttcc cagagaaata atatttatta
     6481 taattccagt tcttcttttt ctgattacag aaggcaaagt gacaattacg catagtttcc
     6541 cgataaagac gcgacagcta catcccgcat aaggcatttt tctctttatc cttgtacggt
     6601 acttcatgga acagagtttt tgaccttgcg aatcgtgatg tctgttgggg aggggcaatt
     6661 tgctcactga agcgtgagac tcgattaagc gcacgaaaca cagaaatcaa aaatcccggg
     6721 cactttttta caaggtaacc gggtaaaaat aatttttatt ttttaactgt tttgagactc
     6781 atagagatgt ctcaaaacta aaatttggct cctctgactg gacttgaacc agtgacatac
     6841 ggattaacag tccgccgttc taccgactga actacagagg aatcgtgaga acgaggcgaa
     6901 tattagcgat gcccacccac aatgtcaaag cctgttattt aaatttgaaa tcgtttgctg
     6961 aaataatctg cattttgtcg tttattccga cacaactggc tttttttcac acttttgcgg
     7021 ttcggatcga gggtatttcc acagccaacg tccagtaacc attcgccagt aaaacagcac
     7081 ggcccgcaca gcccagtcgg caaacattcc catccagaca ccaaccacac cccagccaag
     7141 catgatgccc agcacataac cgacgacaac ccggcaaccc cacatgctca acatagaaac
     7201 ccacatggcg taacgggcat cgcgagcacc tttaaatcca gcgggtagcc cccatgaggc
     7261 ggaccaaata ggcataaata aagcatttag ccaaatcaga atcacaacga catgtttaac
     7321 ctgtggatcc tgggtgtaaa acgatgccat aaccccggca aagggagccg ttagccaggc
     7381 gatggccgtt aatccaagag tggaaagcca gaacacatgc cgcaactgaa tctctgcttg
     7441 cgctatctgc cctaccccca accttcggcc tgtaatgatc gtagaagcag agccgagcgc
     7501 acttccgggt aagttgataa gagccgcaat tgaaaacgcg ataaaatttc cggcaataac
     7561 actggtcccc atcccggcaa cgaacatttg ggttaataac cgaccactgg taaataacac
     7621 tgattcgaca ctcgcgggaa taccaatccc catgacttcc cagataatgc taaaattcag
     7681 cggtttaaaa tagctcttta acgaaatcct tagcgcagga ttaaaaccaa tcgccagcac
     7741 ccacaaaatt gcaactgcgc caatataacg agaaatggtt aaacccagcc ctgccccgac
     7801 aaatcccagt cccggccagg agaaaaggcc gtaaatcaat atgccgctaa taataatatt
     7861 aagaatattc aggctaccgt taatcaatag cggtattttc gtattccctg caccacgaag
     7921 tgccccgcta ccaataagag tgatggcagc tgctggataa ctgagtaccg tcagctccag
     7981 ataagtcaac gccagtactt taacttctgt cgtggcatca cccgcgacga aatcaataat
     8041 ttgttcgcca aaatgatgaa taagcgttgc caacagtacg gcaaacaacg tcatgatcac
     8101 caatgactgc cgcgtcgcca ccctcgctcg tcgtcgatcc cgcttaccga gactaaatgc
     8161 cacaacgaca gtagtaccaa gatcgatagc agcaaaaaaa gccataatga ccatattgaa
     8221 gctgtccgcc aatcccacgc cggccatcgc atcttttccc agccagctga ccagaaaagt
     8281 gctcagaacc cccatcaaca ggacacaggc attctccatg aagataggaa cagcaagcgg
     8341 ggttatctcg cgccagaaca acactttgta gctcttgcgt ttagcgtgcc agcgagtgcc
     8401 gtgaacaacc tggcgtaaag cagaggagat attcaaagcc gaccttaatt gcagaaagtg
     8461 aaaccacatt tcaaataatg agggagaatc agcaaagctg caaagatttt cgccaacaaa
     8521 ttgtctgcaa atgcaacaaa ctgttgatag aaacggcaaa cagttgggga atttaaaaat
     8581 cgggtttgac aaaagatttt tcgccgttaa gatgtgcctc aacagcgatt cctctgtagt
     8641 tcagtcggta gaacggcgga ctgttaatcc gtatgtcact ggttcgagtc cagtcagagg
     8701 agccaaattc cgattcttac gctatcttat tagtccttat ttgatattga ttcaataagt
     8761 tagcgtgaaa atctttccag atgtgtattc agttttccct ccgcatccgg ttaatttggt
     8821 ggtcagattt gggggcaggt tggttcgatt ctggagtgac ccccaaatgt ctttaaacga
     8881 ttcaaaaatc cgtaacttaa aaccctcttc aaaacccgta aaactgtctg attcgcacgg
     8941 tctgtatctg ctggtcaatc agggcggttc gcgtatctgg tatctcaagt atcgcttcag
     9001 tggtaaagag tcccgcgtca gtctgggcgc atatcctctg gtttcacttg ctgaagcaag
     9061 acaacgacgt gacgatatcc gtaagctact gacgcagaat attaaccccg cccaccagcg
     9121 catgtctgat aaagccgcag cgtcaccgga aaagtatttt aaagccgtgg cgcttgcatg
     9181 gcacaaaacc aacaaaaaat ggtcgcctga ttatgccgcg cgcatcctcg ccagcatgga
     9241 aaatcatatc tttccggcga ttggtcatct gcctgtcact acgctgaaaa cgcagaattt
     9301 cactgcgtta ctgcgggtta ttgaggataa aggttttctg gaagtcgcgt cccgaacccg
     9361 gcagcaactc tgcaacatca tgcgttacgc cgtacagcag ggattcaccg aaaacaacct
     9421 ggcgcagcat ctggaaggcg tcaccgcgcc gccggttaag aatcactatc ccgccctgcc
     9481 gctggagcgg ttgcccgaat tgtttgagcg cattggcgac tatcagcagg gacggcagct
     9541 tacgaggctg gcggtggtgt tgactctcca cctgtttatc cgttccagcg agctgcgctt
     9601 tgcccgctgg ggtgagatag atttcagaaa caaaatctgg accatccccg ccacaaggga
     9661 agcgattgag aaagtccgtt tctctggccg tggcgcaaaa atgcgtactc catatatagt
     9721 gccgctttct cgtcaggcta tcgccattct gaagcagata aaggaaatct ccggccatct
     9781 ggaactggtg ttccccggcg accataaccc gtataagccg atgagcgaaa acactgtcaa
     9841 ccgggcgttg cgtcttatgg gctatgatac caaaactgat gtctgtgggc atggattccg
     9901 gacaatggcg tgtagcgcat tagtggaaac tgaactctgg tcacgggata ccgtggagcg
     9961 gcagatgagt catcaggagc gcaacagcgt tcgggcagcg tatatccacc gggctgaaca
    10021 tctcgacgcc cgtacagcca tgatgcagtg gtggtcggat tatctggatg taagtcgcga
    10081 ggggtacgtt gcgccgtata tttatgcgcg gcggcataag gcggcctgag acagtggcta
    10141 tataatttgt taaaaatgaa aaagcagatc ctgattgaat ccggatctgc tttttacatt
    10201 aggcaatcgc tgccagacaa tctgcaccag aaacgccata actgcaccag ttcagtacca
    10261 ccgcttacct gcgccagtct gccgtcgcct gtctgtgtca ggactgcgcc agatcttatc
    10321 gaataaacat caaactgcgc cagtgttacg gccctttcag ccctttggcc ttttccggtc
    10381 tggcgctgtt acccttagcc gccccttacc ctttccggcc tttttccttt gctggcgcaa
    10441 tcgccagaaa aatcgtcaag ctgcaccaga agcctgccaa taggtcatac cgttcagaag
    10501 catcgttatt gagaggaaac cgtacaaaaa atttctacgt agaaattttt tcggtggata
    10561 acgatgaata aagagtattt tataatgtga tggctatcaa aaatcgacca tccaaaaata
    10621 attcattgtt cattgattta taatgaataa ccatgaattt aatagtcgat gattattgtt
    10681 tttatcagta ttgataggaa agtatacaaa aaattttggc cccaaaattt tttgtacgaa
    10741 aaccgatgaa taacgcgaaa ttaataggaa accatccaaa attatttggg gcaaataatt
    10801 ttgcccgaaa accgatggat aactcgatct tttcaaagca acggctatca atcagtatcc
    10861 tttcttccgt aaacctgcgc cacataccgc ccgcgcccgt cgccgtgtcc caaatccatc
    10921 gccgtcattg ccagcgcttc tttctcactg aatccctgcg ccagataatg acgaatggca
    10981 tcctgcgccc acgcatagcg caacgagtgc ggggaatatg tgccagttaa cccgagacgt
    11041 gacgcctggc tgtgccagta tttcatcgcg cttttcaggt cgggtttatc tatcagcctg
    11101 ccgtggcgat cttctgccac aaccaacgca ttatccagcg cttttctgat agcgacagca
    11161 tccagaataa cggtttctcg cggacgcccg cctttggtgc cgaacaccac ggttaaacgg
    11221 ggctcacccc gctccagcga ttgcttccac gttcttaatg actgcgcact ttgcaccacc
    11281 tcctgcgaac gtaatcccat cagccttgag agttccagcg ccgctgccat
//
LOCUS       DAJVUP010000142        10976 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.142, whole genome shotgun sequence.
ACCESSION   DAJVUP010000142 DAJVUP010000000
VERSION     DAJVUP010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10976
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.142"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..109)
                     /locus_tag="OQQ75_003314"
                     /pseudo
     CDS             complement(1..109)
                     /locus_tag="OQQ75_003314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            386..1261
                     /locus_tag="OQQ75_003315"
     CDS             386..1261
                     /locus_tag="OQQ75_003315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001224622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HCS1977534.1"
                     /translation="MRKFILISMITLASVSLGACRQNATIKQDAPGQKAFLIDGQIYD
                     LHSGKIISSSELLADLATARHLIIGEKHDNAEHHQIELWLIQNLLIQRPQGSVLLEML
                     TSDQQPRVNQVKCWLKDNPVVRDSRVQELLNWQKGWSWEMYGDIVMQLLRGPYPLLNA
                     NIGREQMLALYKKNEFPKGKKSTAPVVQEALRETIIAMHEGNLESQQLTSMLSVQQQR
                     DRYMARQLLSAPVPSLLIAGGYHASKNMGVPLHMEDLATGTHPVVLMLAEKGMNITVD
                     HADYVWFVAPDTTKR"
     gene            1269..2045
                     /locus_tag="OQQ75_003316"
     CDS             1269..2045
                     /locus_tag="OQQ75_003316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000981087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HCS1977535.1"
                     /translation="MMNILHFPQSVKWSSWFICSLLLHGLIFLTFIWRFSEVQPAMSP
                     APAIMLQWAEIIEAPSSPLSLPVGIAQQESAVTEEKQQTEDRQQRPVTEDSDATIEIT
                     RKKKSSDGEKKKTRPPRKIKAQTSDSNPTAVSSNAAPQALVESSRIAAPFNSDSTKRD
                     NSEASWESRVKGHLNRYKRYPGDARKRARTGTAVVTFTVNTEGTIVSSFLEISSGTLS
                     LDREAIAVLERAQPLPKPPPEILEGGLFKVKMPITFKLKE"
     gene            2214..4475
                     /locus_tag="OQQ75_003317"
     CDS             2214..4475
                     /locus_tag="OQQ75_003317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS1977536.1"
                     /translation="MNVIKLAIGSGILLLSCGAYSQSISEKTNSDKKGAAEFSPLSVS
                     VGKTTSEQEALEKTGATSSRTTDKNLQSLDATVRSMPGTYTQIDPGQGAISVNIRGMS
                     GFGRVNTMVDGITQSFYGTSTSGTTAHGSTNNMAGVLIDPNLLVAVDVTRGDSSGSEG
                     INALAGSANMRTIGVDDVIFNGNTYGLRSRFSVGSNGLGRSGMIALGGKSDAFTDTGS
                     IGVMAAVSGSSVYSNFSNGSGINSKEFGYDKYMKQNPKSQLYKMDIRPDEFNSFELSA
                     RTYENKFTRRDITSDDYYIKYHYTPFSELIDFNVTASTSRGNQKYRDGSLYTFYKTSA
                     QNRSDALDINNTSRFTVADNELEFMLGSKLMRTRYDRTIHSAAGDPKANQESIENNPF
                     APSGQQDISALYTGLKVTRGIWEADFNLNYTRNRITGYKPACDSRVICVPQGSYDIDD
                     KEGGFNPSVQLSAQVTPWLQPFIGYSKSMRAPNIQEMFFSNSGGASMNPFLKPERAET
                     WQAGFNIDTRDLLVEQDALRFKALAYRSRIQNYIYSESYLVCSGGRKCSMAEVIGNDW
                     EGISDEYSDNMYIYVNSASDVIAKGFELEMDYDAGFAFGRLSFSQQQTDQPTSIASTY
                     FGAGDMTELPRKYMTLDTGVRFFDNALTLGTIIKYTGKARRLSPDFEQDEHTGAIIKQ
                     DLPQIPTIIDLYGTYEYNRNLTLKLSVQNLMNRDYSEALNKLNMMPGLGDESHPANSA
                     RGRTWIFGGDIRF"
     gene            4544..5719
                     /gene="senB"
                     /locus_tag="OQQ75_003318"
     CDS             4544..5719
                     /gene="senB"
                     /locus_tag="OQQ75_003318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterotoxin production-related protein TieB"
                     /protein_id="HCS1977537.1"
                     /translation="MNIFTLSKAPLYLLISLFLPTMAMAIDPPERELSRFALKTNYLQ
                     SPDEGVYELAFDNASKKVFAAVTDRVNREANKGYLYSFNSDSLKVENKYTMPYRAFSL
                     AINQDKHQLYIGHTQSASLRISMFDTPTGKLVRTSDRLSFKAANAADSRFEHLRHMVY
                     SQDSDTLFVSYSNMLKTAEGMKPLHKLLMLDGTTLALKGEVKDAYKGTAYGLTMDEKT
                     QKIYVGGRDYINEIDAKNQTLLRTIPLKDPRPQITSVQNLAVDSASDRAFVVVFDHDD
                     RSGTKDGLYIFDLRDGKQLGYVHTGAGANAVKYNPKYNELYVTNFTSGTISVVDATKY
                     SITREFNMPVYPNQMVLSDDMDTLYIGIKEGFNRDWDPDVFVEGAKERILSIDLKKS"
     gene            6178..6528
                     /locus_tag="OQQ75_003319"
     CDS             6178..6528
                     /locus_tag="OQQ75_003319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1977538.1"
                     /translation="MPSGRHTARIRTGHDSGTVSPFVHSTLSPLVPVYPVFITVIADH
                     DKPQPSGCLLESQGSLCPICRQRITHETGWNVHHKVKKVMGGGEELSNLVLLHPNCHR
                     QLHSCEAGSLKKGL"
     gene            6671..6892
                     /locus_tag="OQQ75_003320"
                     /pseudo
     CDS             6671..6892
                     /locus_tag="OQQ75_003320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6913..6975)
                     /locus_tag="OQQ75_003321"
                     /pseudo
     CDS             complement(6913..6975)
                     /locus_tag="OQQ75_003321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
     gene            7426..8838
                     /gene="ospC1"
                     /locus_tag="OQQ75_003322"
     CDS             7426..8838
                     /gene="ospC1"
                     /locus_tag="OQQ75_003322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC1"
                     /protein_id="HCS1977539.1"
                     /translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
                     KNLKDSANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
                     LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
                     GICTKRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTKHHTVDFGANAYIIDHDSP
                     YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
                     LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
                     VKIREISLEEAVTASNYEEINKQVTNKKIALQTLFLSITNQKEDVALYILSNFEITRQ
                     DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
                     NAEMIKLLLKYGATSDNKYI"
     gene            complement(8942..9090)
                     /locus_tag="OQQ75_003323"
                     /pseudo
     CDS             complement(8942..9090)
                     /locus_tag="OQQ75_003323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            9166..10863
                     /gene="ospD3"
                     /locus_tag="OQQ75_003324"
     CDS             9166..10863
                     /gene="ospD3"
                     /locus_tag="OQQ75_003324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspD3"
                     /protein_id="HCS1977540.1"
                     /translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
                     SFLLNLNCQVTDHSGKLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
                     EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
                     NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
                     VDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
                     AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
                     ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
                     AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
                     LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
                     PNGVSGLIIAFQNRNFEAIKTYMGIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
BASE COUNT         3399 a         2326 c         2323 g         2928 t
ORIGIN      
        1 ctccgttgta atgtgccagc cgggaggccg ctatcggcgg cttcttcaga taacgaccca
       61 ggtagcgcgc cgtattcctc ccgccggcca ttttcttcga catgtacatc aggcgcggaa
      121 ctcatcgggg cgcgggaatg aaatcccatt cagactccgg atagattcaa gcaagcccac
      181 ttatcgtcaa aatcggtgtt gcaaaaacgg gagtgaccat agatccgttt tccaagcgga
      241 ccccataata tcggctggta aacatcactc gctagtgcat tctttttgtt ggtaatgata
      301 attatttaca tttattcttt gatgttttat cataattaat gttttatcaa taaatatatg
      361 gaaatatatt gtttcagatg ggaatatgag aaagttcatc cttatttcta tgataacgtt
      421 agctagtgtt agtctgggag cctgcagaca gaatgccacc ataaagcagg atgcgccagg
      481 gcagaaagct ttcctgattg acgggcagat ttacgatttg cacagtggca aaattatttc
      541 tagcagcgag cttttggcgg atcttgctac cgctcgacat cttattattg gtgaaaaaca
      601 cgataatgcc gagcatcatc agattgagct ttggcttatt caaaatctgc tcatccagcg
      661 accacagggg agtgtgttgc ttgagatgtt gacgtcagac caacagcccc gagttaacca
      721 agttaaatgt tggctgaaag ataatcctgt ggttcgagat agccgtgttc aggaactact
      781 taactggcaa aaagggtggt cctgggagat gtatggcgac atcgtcatgc agctattacg
      841 tgggccttac ccgctgctca atgccaacat tggccgggag cagatgttgg cactgtacaa
      901 aaaaaacgaa tttcctaaag gaaaaaaatc cactgcacct gtggtacaag aagctctgcg
      961 tgaaaccatc atagctatgc atgaaggcaa ccttgaaagc cagcaactga cgtcaatgct
     1021 ctctgttcag cagcagcggg atcgctacat ggcccgccag cttctgagtg ccccggtacc
     1081 gtcgttgttg attgcaggtg gttatcacgc gtcaaaaaac atgggcgtac cgttacacat
     1141 ggaagatctt gccaccggca cccatccagt ggtgttgatg cttgcagaaa aaggaatgaa
     1201 catcacagta gatcatgctg actacgtgtg gtttgtagcg ccagatacaa caaaaaggta
     1261 aaccatggat gatgaatatt ctccacttcc cacagtcggt aaaatggagc agctggttta
     1321 tctgttctct actgcttcat ggactgattt tccttacgtt tatctggcgt ttttccgaag
     1381 ttcagcccgc tatgtctcct gcaccggcga tcatgctgca atgggcagaa attatagagg
     1441 ctccttcttc tccactttcg cttccggtgg gaatcgctca acaggagtcc gcagtgacag
     1501 aagaaaagca acaaactgag gacagacaac aacgtcctgt cactgaagac agtgatgcaa
     1561 ccattgaaat aactaggaag aaaaagtcat ccgatggaga aaagaaaaag acacgtccac
     1621 ctcgtaagat aaaggctcaa accagcgaca gcaaccccac agccgtttcc agtaatgctg
     1681 cacctcaggc tctggtcgaa tcgtcccgta ttgctgcgcc ttttaacagt gactcaacaa
     1741 agcgagataa ttctgaggca tcttgggaaa gcagagtaaa aggccacctt aaccgttata
     1801 aacgttaccc tggcgatgcc agaaaacgtg cacgaaccgg cacagccgtt gtgactttta
     1861 ccgtaaacac ggaaggcact attgtcagta gtttcttgga aatctcgtca ggaacccttt
     1921 ctcttgaccg cgaagctatt gctgttttag aacgcgctca accacttccc aaaccaccgc
     1981 ctgaaatatt ggagggagga ttatttaaag taaaaatgcc gattaccttt aagttgaagg
     2041 agtaaaggga taattggccg ttcaagttca tttaactgaa atttaatttt catttttatg
     2101 ctgaacattt tatcaaactt ttccactgtc gaaaaaatca aaaagacagt agatcataat
     2161 taataaacaa atagttatac ttatctttat taatattata tccaaggaaa tttatgaacg
     2221 ttataaaact ggctatcggc tcaggcatat tattgctcag ctgcggtgct tactcacaat
     2281 ccatcagtga aaaaactaat tccgacaaaa aaggagcggc agaattcagt ccgctcagcg
     2341 tttctgtcgg gaagacgacc agtgagcagg aagctctcga gaaaacaggc gcgaccagtt
     2401 cccggacaac ggacaaaaac ctgcaatcac ttgacgcaac agtgcgtagt atgcctggta
     2461 cttatactca aatagatcct ggtcagggag caatcagtgt gaatattcga ggcatgagcg
     2521 gatttggtcg tgtaaacact atggtcgatg gtattaccca gagtttttac ggaacctcta
     2581 cctccggaac aacggcgcat ggttcaacta acaatatggc tggcgtactt atagatccta
     2641 acttactggt agcagttgat gttacacgcg gtgacagcag tggctctgaa gggatcaacg
     2701 cccttgccgg tagtgcaaat atgcgtacta ttggcgttga cgatgtaata tttaacggta
     2761 atacatatgg ccttcgttca cgtttctctg tcggtagtaa tgggctggga cgcagcggaa
     2821 tgatcgccct tggtggaaaa agcgacgctt ttacggatac gggaagcatt ggcgttatgg
     2881 ctgctgtgag tggcagttct gtgtactcta atttctcaaa tggttctgga attaacagca
     2941 aagagtttgg ttatgataaa tatatgaagc agaaccccaa atcccaactg tataaaatgg
     3001 atatcagacc agacgaattt aacagcttcg aactttccgc tcgaacctat gaaaataaat
     3061 ttacacgtcg tgatataacc agtgacgact attacattaa atatcattac accccttttt
     3121 ctgaattaat tgactttaac gtaacggcca gtaccagtcg cggtaatcaa aagtatcgtg
     3181 atggctcgct gtatactttc tacaaaacct cagcgcaaaa tcgttctgac gcgctggata
     3241 tcaacaatac cagccggttc actgtcgcgg acaatgaact ggagtttatg ctgggcagca
     3301 aactgatgcg tacccgctat gaccggacca ttcactcagc ggcgggcgac ccgaaagcga
     3361 atcaggaatc gatcgagaac aatccgttcg caccctccgg ccagcaggat atttcagcgc
     3421 tgtataccgg gctgaaggtt acgcgcggca tctgggaggc agatttcaat ctcaactaca
     3481 cacgtaacag gatcacaggg tacaagcccg cctgcgattc acgcgttatc tgcgtgccac
     3541 agggtagcta cgatattgac gataaagagg gtggcttcaa cccttcagtt cagctttctg
     3601 ctcaggtaac accatggctt cagccgttca ttggctacag caaatccatg cgcgccccga
     3661 acatccagga gatgttcttc tctaattcag gaggcgcatc catgaaccca ttcctgaagc
     3721 ctgaacgtgc agaaacctgg caggcgggtt ttaacattga taccagagat ttactggtcg
     3781 aacaggatgc cctgcgcttt aaggctctgg cgtaccgcag caggatccag aactacatct
     3841 acagcgagtc ttatctggtt tgttctggag gtcgtaaatg cagtatggct gaggtgattg
     3901 gcaatgactg ggagggcatt agcgatgaat acagcgacaa tatgtacatc tacgttaact
     3961 cggcaagcga cgttattgca aagggcttcg aactggagat ggattatgat gcaggttttg
     4021 cttttggccg actctctttc agccagcagc aaacagacca gccaacctcc atcgccagca
     4081 cctactttgg cgcaggggat atgaccgaac tgcccagaaa atacatgacg ctggatactg
     4141 gtgttcgctt cttcgataac gcgttgaccc tgggcactat cataaaatac acaggcaagg
     4201 ctcgtcgcct gtcgcctgat tttgagcagg acgaacatac cggcgcaata atcaaacagg
     4261 atttgccgca gatcccaacg attatcgatc tctatggtac ttacgagtac aaccgcaacc
     4321 tgacactgaa actttcggta caaaacctga tgaacagaga ttattcggag gcgctgaata
     4381 agctcaacat gatgccaggt cttggtgacg agagccaccc agccaattcc gcgcgtggca
     4441 gaacatggat atttggcggg gacattcgtt tctgatgaca atttccgcca ggttcagaca
     4501 atacgttttc tctcttatgt caattttatt gcaggaacga aaaatgaata tttttacttt
     4561 atccaaagca ccgctatact tgttaatttc actattttta cccacgatgg ccatggctat
     4621 cgatccacct gaacgcgaac tttcgcgatt tgccctgaaa acgaattacc ttcagtcccc
     4681 tgatgaaggc gtctatgaac tggcgtttga taatgccagt aaaaaggtgt ttgcagcagt
     4741 caccgatcgt gtaaatcgtg aagccaataa aggctatctg tattcgttta attcagattc
     4801 gctgaaagtc gaaaataaat acacgatgcc ataccgggca ttttcgctgg cgataaatca
     4861 ggataaacat cagctctata tcggacacac ccagtcagcg tccctgcgta tcagtatgtt
     4921 tgacacccca accggtaaac tggtaagaac cagcgacagg ttaagtttta aagcggcaaa
     4981 cgctgcagat tcgcgttttg agcatttgcg ccatatggtt tacagccagg attccgatac
     5041 cctgtttgtg agttatagca atatgctgaa aacggccgag ggcatgaagc ctctgcataa
     5101 gctgttaatg ctcgacggga cgacgcttgc cttaaaaggc gaggttaagg atgcttacaa
     5161 aggtacagcg tatggtctga cgatggatga aaaaacacag aaaatctacg ttggcggaag
     5221 agattacatc aacgaaattg atgcgaaaaa tcagacgctg ctgcgtacca tcccgttgaa
     5281 agatccgaga ccacaaatca caagtgtgca gaatctggcg gtggactccg cttctgaccg
     5341 tgcctttgtg gtggtattcg accatgacga tcgttccggt acaaaagatg gcctctatat
     5401 ttttgactta cgcgacggta aacagcttgg ctatgtgcac acaggagccg gagctaacgc
     5461 ggtgaaatac aatccgaaat ataacgaact gtatgtcacc aacttcacta gcggcaccat
     5521 cagcgtagtg gatgccacca aatacagcat cacccgtgaa tttaacatgc cggtctaccc
     5581 aaaccagatg gtgttgtcgg acgatatgga taccctttac attggcatca aagaaggctt
     5641 taaccgcgat tgggatcctg atgtgtttgt ggaaggagct aaagaacgta ttctgagcat
     5701 tgatttgaaa aagtcgtgat cgggggaaaa aacatgggat aaaaactccg ttattccact
     5761 aaactggccg gactaggaaa agcaaacatc tctgtcctgc cggtacgcct gttacgccgc
     5821 tccatgaggc tgaggaatct ccagaaaacg agacaggcac agcattgtac gatcaactga
     5881 tttgtgccaa taattcaatg aaatcacagc tatgcctgtt cacgtatagg aaattgaaaa
     5941 actaagcgat accactgtcc gcgtcttatg cctcgtgcgg taagctgttt ttcacatcac
     6001 gccggtgttt ttttctttct gtggacggtt ttaatactgt aatcggccgt tttttatact
     6061 taccccgatt cccgggcgca cttatcctgc atcaccccgg gatatacctc agcagactga
     6121 tatcccgcgc gtttttcttc agcccctcca cattcagtcc cgcgatgacc cggcggtata
     6181 ccatccggcc gccacacagc acgcattcga acgggtcacg actcaggaac tgtttcacca
     6241 tttgtgcata gcacactttc gccactggtt ccggtttatc ctgtttttat aacggtaatt
     6301 gcagaccatg acaaaccgca gccgtcaggc tgcctactcg agtcacaagg ctctctgtgt
     6361 ccgatatgcc ggcagcgcat tacccatgaa actggctgga acgtacacca taaggtgaag
     6421 aaagttatgg ggggcggtga agaattatct aaccttgtct tgttacatcc aaattgccat
     6481 cgacagttac acagttgtga agccggctct ctcaaaaagg gcttataaag gcttgagcgg
     6541 tgtaccggga aaccggtatg caccgttctt aggggagggc agtccagcaa tgaactgtcc
     6601 ttacccgaca aacatccaaa acgaacggaa cgtgctggaa tccgcatata acccgttgta
     6661 aagtgaggaa atggacacct cacttgctca tgagaacgcc cgcctgcggg cactgttgca
     6721 gacgcaacag gacactatcc accagatggc tgaatacaac cgcctgctct cacagcggat
     6781 ggcggcttat gcttccgaaa tcaaccgact gaaggcgctg gttgcgaaac tgcagcgtat
     6841 gcagttcggt aaaagcccag aaaaacttcg cgcaaaaacc gaacggcaga ttccattttc
     6901 acgggcgatc tacgccacac aggctctggg ttgcagtgac tgctccatta aggcgatttt
     6961 gaactcataa gggaagtaac aaaaaaactg caaaagtaca ataattatat atggccaaac
     7021 taacctctat taaaaaaaca tcagtttttc acacttagtt gagcttcatg aaaaaatcat
     7081 cgaggatttc attgcagaat acacattcca ctaactggaa gcactccata agaggaatca
     7141 gagaaagtat cgttttttta tagtaaaatt cattgctgtt caataaaatt gatataatta
     7201 ttaaattatg gaaataattt cacaaaaaag attaacttga gttcttaagc atcggatttt
     7261 agatattttg aaatatctgg catcacataa catcaaaagt atataatacc cttatctaat
     7321 tacatgcagt atattgtata tatactcaaa aattgtaatt cataccctac tatatcttgt
     7381 ggggaaagat attaattaaa actgttttca tataaggttc attttatgaa tatatcagaa
     7441 acactgaact cagcaaatac ccaatgcaat atagattcta tggataacag attacataca
     7501 ttgtttccaa aagtgacatc agtgcgaaac gctgcacaac aaactatgcc agatgaaaaa
     7561 aatttaaaag atagtgcaaa tattattaaa gatttcttta ggaaaactat agcagcacaa
     7621 agttatagta gaatgttctc tcaaggctct aactttaaat ctttaaatat agcaattgat
     7681 gcaccatcag acgctaaagc ctcatttaag gctattgagc accttgacag attatcgaag
     7741 cattatatat ctgaaataag ggaaaaactt catcctcttt ctgcagagga actcaatttg
     7801 ctttcgctaa ttattaattc tgatttaatc ttcagacatc aaagtaattc tgatttgtct
     7861 gataaaattt taaacattaa gtcattcaat aaaattcagt ctgaaggaat atgcacaaaa
     7921 cgaaacacat acgctgatga tataaaaaaa atagctaatc atgactttgt gttttttggc
     7981 gttgaaatct ctagccatca gaaaaaacac cccctgaata caaaacatca cactgttgat
     8041 tttggtgcaa atgcgtatat cattgatcat gactctccat atggatatat gacattaacc
     8101 gatcactttg ataatgctat tccacctgtt ttttaccatg agcaccaatc atttttagat
     8161 aaattttcag aggttaataa agaagttagt cgatacgtac atggaagtaa aggaattata
     8221 gatgtaccaa tattcaatac taaagatatg aagttagggc tcggattata cctgattgac
     8281 tttattagaa aaagtgaaga ccaaagcttc aaggagtttt gctatggaaa aaatcttgcc
     8341 cctgtggatc tggatagaat cataaacttt gtttttcagc cagagtacca tatacctagg
     8401 atggtaagta cagaaaactt caaaaaagtt aagattagag aaatatcctt agaggaggct
     8461 gttacagcat ctaattacga agaaattaac aagcaggtca ctaacaaaaa aattgctctc
     8521 cagactcttt ttctttcgat tactaatcaa aaagaggatg tcgccttata tatattatct
     8581 aattttgaga taactagaca agatgttatt tccataaagc atgagttgta tgatattgag
     8641 tatctactta gcgctcataa ttcaagctgt aaagtacttg agtattttat caataaggga
     8701 ttggttgatg taaacacaaa gttcaaaaaa actaatagtg gggattgtat gttggataac
     8761 gcaataaaat atgagaatgc agaaatgata aaactattat tgaaatatgg tgcaacatct
     8821 gacaataaat atatttaatc aaaattgaat atcgtttagc aaaaggcagt atttgcacaa
     8881 aatatcgata tattgtttat tgtcagtatg gctcaatgtg ataatagttg gaaagtttga
     8941 tgggtttcgc cccgttgtag cggtagtcga gctggaaggt cttcaggcac tgcttacagc
     9001 gatagagcag cccccctgaa ctggaatggc cgttccggat accccctgag tttcagagta
     9061 acggggacaa accacatcaa tctttgccat caatcatcca aagggcaaag agtacaacaa
     9121 cactaagtct gcgtcacaac ccatcaatga aaggaatata tacatatgcc atcagtaaat
     9181 ttaatcccat caaggaaaat atgtttgcaa aatatgataa ataaagacaa cgtctctgtt
     9241 gagacaatcc agtctctatt gcactcaaaa caattgccat atttttctga caagaggagt
     9301 tttttattaa atctaaattg ccaagttacc gatcactctg gaaaacttat tgtctgtcga
     9361 cacttagctt cctactggat agcacagttt aacaaaagta gtggtcacgt ggattatcat
     9421 cactttgctt ttccggatga aattaaaaat tatgtttcag tgagtgaaga agaaaaggct
     9481 attaatgtgc ctgctattat ttattttgtt gaaaacggtt catggggaga tattattttt
     9541 tatattttca atgaaatgat ttttcattcc gaaaaaagca gagcactaga aataagtaca
     9601 tcaaatcaca atatggcatt aggcttgaag attaaagaaa ctaaaaatgg gggggatttt
     9661 gtcattcagc tttatgatcc caaccataca gcaactcatt tacgagcaga gtttaacaaa
     9721 tttaacttag ctaaaataaa aaaactgact gtagataatt ttcttgatga aaaacatcag
     9781 aaatgttatg gtcttatatc cgacggtatg tctatatttg tggacagaca tactccaaca
     9841 agcatgtcct ccataatcag atggcctaat aatttacttc accccaaagt tatttatcac
     9901 gcgatgcgta tgggattgac tgagctaatc caaaaagtaa caagagtcgt acaactatct
     9961 gacctttcag acaatacgtt agaattactt ttggcagcca aaaatgacga tggtttgtca
    10021 ggattgcttt tagctttaca aaatgggcat tcagatacaa tcttagcata cggagaactc
    10081 ctggaaactt ctggacttaa ccttgataaa acggtagaac tactaactgc ggaaggaatg
    10141 ggaggacgaa tatcgggttt atcccaagca cttcaaaatg ggcatgcaga aactatcaaa
    10201 acatacggaa ggcttctcaa gaagagagca ataaatatcg aatacaataa gctgaaaaat
    10261 ttgctgaccg cttattatta tgatgaagta cacagacaga tacccggact aatgtttgct
    10321 cttcaaaatg gacatgcaga tgctatacgc gcatacggtg agctcattct tagcccccct
    10381 ctcctcaact cagaggatat tgtaaatttg ctggcctcaa ggagatatga caatgttccc
    10441 ggacttctgt tagcattgaa taatggacag gctgatgcaa tcttagctta tggtgatatc
    10501 ttgaatgagg caaaacttaa cttggataaa aaagcagagc tgttagaagc gaaagattct
    10561 aatggtttat ctggattgtt tgtagccttg cataatggat gtgtagaaac aattattgct
    10621 tatgggaaaa tacttcacac tgcagacctt actccacatc aggcatcaaa attactggcg
    10681 gcagaaggcc caaatggggt atctggatta attatagctt ttcaaaatag gaattttgag
    10741 gcaataaaaa cttatatggg aataataaaa aatgaaaata ttacacctga agaaatagca
    10801 gaacacttgg acaaaaaaaa tggaagtgat tttctagaaa ttatgaagaa tataaaaagc
    10861 tgaatattat ctcgtggtga tacactgaat ttgaggtaac cggctcattt aaaccgtctg
    10921 gtctgttacc tccggttcca caaaaataat gtccatcatt ttgaagtgga cactat
//
LOCUS       DAJVUP010000143        10930 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.143, whole genome shotgun sequence.
ACCESSION   DAJVUP010000143 DAJVUP010000000
VERSION     DAJVUP010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10930
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.143"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            119..748
                     /locus_tag="OQQ75_003325"
                     /pseudo
     CDS             119..748
                     /locus_tag="OQQ75_003325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004129194.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
     gene            745..1359
                     /locus_tag="OQQ75_003326"
     CDS             745..1359
                     /locus_tag="OQQ75_003326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS1977541.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1416..2873)
                     /gene="pepD"
                     /locus_tag="OQQ75_003327"
     CDS             complement(1416..2873)
                     /gene="pepD"
                     /locus_tag="OQQ75_003327"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1977542.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            3134..3592
                     /gene="gpt"
                     /locus_tag="OQQ75_003328"
     CDS             3134..3592
                     /gene="gpt"
                     /locus_tag="OQQ75_003328"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1977543.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3684..4928
                     /gene="frsA"
                     /locus_tag="OQQ75_003329"
     CDS             3684..4928
                     /gene="frsA"
                     /locus_tag="OQQ75_003329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS1977544.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            4986..5387
                     /gene="crl"
                     /locus_tag="OQQ75_003330"
     CDS             4986..5387
                     /gene="crl"
                     /locus_tag="OQQ75_003330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HCS1977545.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5426..6481)
                     /gene="phoE"
                     /locus_tag="OQQ75_003331"
     CDS             complement(5426..6481)
                     /gene="phoE"
                     /locus_tag="OQQ75_003331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HCS1977546.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF
                     GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN
                     LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF
                     DFGLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK
                     LNINNDDIVAIGMTYQF"
     gene            6769..7872
                     /gene="proB"
                     /locus_tag="OQQ75_003332"
     CDS             6769..7872
                     /gene="proB"
                     /locus_tag="OQQ75_003332"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HCS1977547.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            7884..9137
                     /gene="proA"
                     /locus_tag="OQQ75_003333"
     CDS             7884..9137
                     /gene="proA"
                     /locus_tag="OQQ75_003333"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HCS1977548.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            9252..9327
                     /locus_tag="OQQ75_003334"
     tRNA            9252..9327
                     /locus_tag="OQQ75_003334"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9285..9287,aa:Thr,seq:cgt)
     gene            complement(10382..10816)
                     /locus_tag="OQQ75_003335"
     CDS             complement(10382..10816)
                     /locus_tag="OQQ75_003335"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1977549.1"
                     /translation="MGYDSRLDRLATTSWHSFFNNITARGEIMEPYSLTLDEACHFLK
                     ISRPTAINWIRTGRLQATRKDPTKNKSPYLTTRQACIAALQSPLHTVQVSAGDGITEE
                     RKCHSSAEVKYGTPVSHCRTVKDLNSLLEQRTKGRRQNSMTS"
     gene            complement(10732..>10930)
                     /locus_tag="OQQ75_003336"
     CDS             complement(10732..>10930)
                     /locus_tag="OQQ75_003336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000206055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977550.1"
                     /translation="SLEVEPDERESYELFMEKHFGGLVDSRRAKNGDNEYMAWDMTLG
                     WIVWQQRAGIHFSTISQQEVK"
BASE COUNT         2600 a         2699 c         2824 g         2807 t
ORIGIN      
        1 ctattagcgg ttaccagcgc cccaccagac ccggtgacat caccccccgg atcatggacg
       61 actgggggca gtaatcatgc cgggtctggc tggctaacac cccattataa ggggtacgaa
      121 taaagtaacg gggcagtcta ttttacagcg gcatattgcc tcgttctcgc atcatggttt
      181 gcctcaaggc agtgacgacg cgctacggta tattgcggaa catgacgatg cgctggcgtt
      241 tgcgtgtatt aatcgccaga tgatcgcttt gcgcataatg caacaagtta aggccacggg
      301 aagtccggtt ctggatgtgg cgcataactt tgttagcgcg tgtcaaatcg gcgatcaaca
      361 gggctggttg catcgtaaag gtgccacgcc ggatgacaac ggtctggtga ttattcccgg
      421 ttcacgtggt gattactcct ggattgtaca gcctgttgcg aacgaaaaaa cgctccactc
      481 gctggcgcat ggggcagggc gtaaatgggg gcgcaccgag tgtaaatggc gtctggcagc
      541 gaaatacacg gtgacgcaac tctcgcggac tgaacttggc agtcggataa tttgtcgcga
      601 taaacaactc atctttgaag aagcgccaca agcctataaa tcggctgaaa gcgtggtgca
      661 atgtctggtg caggccggtt taattattcc tgtcgcgcgg ctgcgtccgg tgctaacgct
      721 caaaaacagt ggagggaaaa aaggatgatc ttgctacaac tctcctcagc gcaggggccg
      781 gaagaatgtt gtctcgcagt gaaaaaggcg ctggacaggc taattaaaga agctgcccga
      841 caagacgtcg cggtaacggt gttggaaaca gaaacgggcc gctactctga cacgctgcgt
      901 tcagctctgg tttctctgga tggcgataac gcatgggcat taagcgaaag ctggtgtggc
      961 actattcagt ggatttgtcc gagtccgtat cggcctcatc atgggcgcaa aaactggttt
     1021 ctgggcattg ggcgttttac cgctgatgag caggagcaat ccgatgcgat ccggtatgag
     1081 acgctgcgtt cgtcggggcc gggcggtcaa catgtcaata aaaccgactc ggcggtacgc
     1141 gccacgcatt tggcatccgg tattagcgtg aaggttcagt cagagcgtag tcagcatgct
     1201 aacaagcggc tggcacgatt gctgattgcc tggaagctgg agcagcagca acaggaaaat
     1261 agcgcggtgc tgaaatcgca gcggcgaatg ttccatcacc agattgaacg tggcaacccg
     1321 agacggacat ttacagggat ggcttttatc gaaggataat gaaggatgaa actgccggaa
     1381 ggcgattaaa cgccatccgg cagcaaatca aataattact tcgccggaat ttctttcagc
     1441 agttcagtca gcagtgtcca gtaatgacct acgctttcga tgtgaacttg ctcatccgga
     1501 gagtgtggac cggtgatagt tggcccgata gaaaccatgt ccatttccgg atacggtttt
     1561 ttgaacagac cacattccag gcccgcgtgg ataatctgga tgttcggcgt cttgttgaac
     1621 aggcgctgat aggtttcacg taccagatgc atcaccggag aattagcgtc cggctgccag
     1681 ccaggatatg cgcctttcgc ttcggttttc gcgccagcca gtttacccag cgaatccagc
     1741 atgctcacca cgtagtcttt accgctgtcg atcagtgaac ggatcaggca gtgaatttct
     1801 acgttattgt cagtcatggt caccacaccg acgttcaggg aggtttcaac cacacctttg
     1861 gctacatcgg agttgcggat cacaccgttc ggggtggcgt tcagcagacg aataaaggta
     1921 tcgcgagatt tcgcaatcag ggcagcttta tcgttcgcta cagagtccag caacaaggcc
     1981 agatttttct ctttctctgc cagctcgttt ttcaggatct cctgataggt attcaccaga
     2041 gatttcagtg cgtcgacttt atcagctgcg acagcaatgg tcgcaaaggc ttcacgcggg
     2101 atggcgttac gcagtgtgcc gccgttgaaa tcgataaggc gcaggtccag ttcttctgca
     2161 tgacccgcca ggaagcgcac cagcagtttg ttggcattac ccaggccaac gtggatttca
     2221 ccgccggagt gaccgccttt cagacctttt aaggttaact tgaaggtttc aaaaccagct
     2281 ggaaccgctt cacgatctaa atgcaggttg gaggtgaagt cgataccccc cgcacaaccc
     2341 atgtagattt caccttcttc ttcggagtcg gtgttaatca gaatatcagc ctgcaaccag
     2401 ttgctctgta agccaaaagc accgtccata ccggcttctt cggtcatggt cagcagcact
     2461 tccagcggac cgtgaaccac gttttcgtca gccagaaccg ccagtgcaga ggccatacca
     2521 atgccgttat ccgcacccag cgtggtgccg cgcgctttaa cccattcgcc atcaatataa
     2581 ggctggatag gatctttcgt gaagtcatgc acggtgtcgt tatttttctg cggcaccata
     2641 tcgaggtggg cctgtaagac gaccggttta cgattttcca tacctgcggt agcaggttta
     2701 cgaatcagga tattacctac ctgatcgcgt tcgacatgga aacctttctc ttttgcccaa
     2761 ccaacaatgt attcagcgag ttgctcttca tgataggacg ggtgcggaat agaacagatt
     2821 ttggcaaaaa tatcccacag cggctgtgga gataattgag acagttcaga cacgttaagt
     2881 ctccttgtcg atcacccgca aaacagtatt gcaggtcaca gggttagcag aaaatgttgt
     2941 caacacaaga caggcttgcg agatatgttt gagaatacca ctttatcccg cgtcagggag
     3001 aggcagtgcg taaaaagacg cggactcatg tgaaatactg gtttttagtg cgccagatct
     3061 ctataatctc gcgcaaccta ttttcccctc gaacactttt taagccgtag ataaacaggc
     3121 tgggacactt cacatgagcg aaaaatacat cgtcacctgg gacatgttgc agatccatgc
     3181 acgtaaactc gcaagccgac tgatgccttc tgaacaatgg aaaggcatta ttgccgtaag
     3241 ccgtggcggt ctggtaccgg gtgcgttact ggcgcgtgaa ctgggtattc gtcatgtcga
     3301 taccgtttgt atttccagct acgatcacga caaccagcga gagcttaaag tgctgaaacg
     3361 cgcagaaggc gatggcgaag gcttcatagt tattgatgac ctggtggata ccggtggtac
     3421 tgctgttgcg attcgtgaaa tgtatccaaa agcgcacttt gtcaccatct tcgcaaaacc
     3481 ggctggtcgt ccgctggttg atgactatgt tgttgatatt ccgcaagata cctggatcga
     3541 acagccgtgg gatatgggcg tcgtattcgt cccgccaatc tccggtcgct aatcttttca
     3601 acgcctggca ctgccgggcg ttgttctttt taacttcagg caggttacaa tagtttccag
     3661 taagtattct ggaggctgca tccatgacac aggcaaacct gagcgaaacc ctgttcaaac
     3721 cccgctttaa acatcctgaa acctcgacgc tagtccgccg ctttaatcac ggcgcacaac
     3781 cgcctgtgca gtcggctctt gatggtaaaa ccatccctca ctggtatcgc atgattaacc
     3841 gtctgatgtg gatctggcgc ggtattgacc cacgtgaaat cctcgacgtc caggcacgta
     3901 ttgtgatgag cgatgctgaa cgtaccgacg atgatttata cgatactgtg attggctacc
     3961 gtggtggcaa ctggatttat gagtgggcca cccaggcgat ggtgtggcaa caaaaagcct
     4021 gtgcggaaga agatccgcaa ctcagtggtc gacactggct gcatgcggct acgttgtaca
     4081 acattgccgc ctatcctcat ctgaaaggag atgacctggc cgagcaagcg caggctttat
     4141 caaaccgcgc ctatgaagag gccgcccagc gtctgccggg cacgatgcgg cagatggagt
     4201 ttaccgtacc cggcggtgcg cccatcaccg gctttttgca tatgccgaaa ggcgatggcc
     4261 cgttcccgac agtattaatg tgtggtggtc tggatgcgat gcagacggac tattacagcc
     4321 tgtatgaacg ttattttgcg ccgcgcggca ttgtgatgct gactattgat atgccgtcgg
     4381 tgggcttttc ttcaaaatgg aagctcaccc aggactccag cctgttgcat cagcacgtct
     4441 taaaggcgct gcctaacgta ccgtgggtgg atcacactcg cgtcgcggcc tttggtttcc
     4501 gtttcggcgc taacgttgcc gtgcgtctgg catatcttga atcgccgcgt ctgaaagcgg
     4561 ttgcctgtct tggtccggta gttcataccc tgttgagtga ttttaagtgc cagcaacagg
     4621 tgccggaaat gtatcttgac gttctggcga gtcgtttggg gatgcatgat gcttccgacg
     4681 aagcgttacg cgtggagctg aatcgctatt cattaaaagt gcaaggattg ctgggacgtc
     4741 gctgcccaac gccaatgtta tcaggctact ggaagaacga tccgttcagc ccggaagagg
     4801 actcacgctt aatcacctca tcatctgctg acggtaaatt attagagatc ccatttaacc
     4861 cggtgtatcg gaattttgac aaaggtcttc aggaaatcac cggctggatc gaaaaacgct
     4921 tgtgttaaaa atttgctaaa ttttgccaat ttggtaaaac agttgcatca caacaggaga
     4981 tagcaatgac gttaccgagt ggacacccga agagcagatt gatcaaaaaa tttaccgcac
     5041 taggcccgta tattcgtgaa ggtaagtgcg aagataatcg attctttttc gattgtctgg
     5101 ctgtatgcgt caacgtgaaa ccggcaccgg aagtgcgtga attctggggc tggtggatgg
     5161 agctggaagc gcaggaatcc cgttttacct acagctacca gtttggtctg ttcgataaag
     5221 caggcgactg gaagagtgtt ccggtaaaag atactgaagt ggttgaacga ctggagcaca
     5281 ccctgcgtga gtttcacgag aagctgcgtg aactgctgac gacgctgaat ctgaagctgg
     5341 aaccggcgga tgattttcgt gacgagccgg tgaagttaac ggcgtgagtg aaatgtgccg
     5401 gatgcatcac atccggcaat atctattaaa actgatacgt catcccaatc gcgacaatat
     5461 catcattatt aatattcaat ttgttatcgc tatccagttg gttgatttta taatcaacaa
     5521 atgctgacat atttttgttg aaataatacg tagcaccgac gtcgatataa ttaaccagat
     5581 cttcaccacc gatgccctca atatctttcc ctttcgataa gacataaccc agcgatggac
     5641 gcagaccaaa gtcaaactgg tattgagcga ccgcttcaaa gttctgtgtc ttattggcaa
     5701 agccgccagt tattggcgtc attttgcgag tttcagaata gaaagttgcc agataaatat
     5761 tattggcatc gtatttcaga cctgttgccc atgcttctgc acgcttgcct gtgccacggc
     5821 tttgcaggtt ctgctcgttg gtgcgatctg agttggtata ggccccacta atggcgaaat
     5881 cgctgccgcc aaagtcatat gtcaatgacg tgccgaagcc atcgccgttt tgctttttaa
     5941 cgtcgcggtt ttcgtttttc ccttgatatt gcagggttaa gttcaggcca tcgataacgc
     6001 cgaagaagtc ggtgttccga tacgtcgcca gaccgctggc gcgtttggtc ataaagttgt
     6061 cggtctgcgc cgaggagtcg ccaccaaatt ccggaaacat atcggtccag gcttccacgt
     6121 catacaacgc gcccaggtta cgaccataat cgaaagaacc caaatcttta tatttcaacc
     6181 cggcaaaagc gagacgcgtt ttttgctgtg cagtatcact ctctgcttta ttaccggcaa
     6241 actctgcttc ccaacgacca taaccagtca gttgatcgtt aatttgtgtt tcgcctttaa
     6301 aaccaaaacg gatataactc tggtcgccat ctttactgtc gttatcactc atataatgca
     6361 tggctttaac tttgccatag acatccagtt tattaccgtc tttgttatat atttctgcgg
     6421 cctgtacgga tgcagatgcc acaatgccca tcaccactaa tgccagagtg ctctttttca
     6481 ttttcattcc tgattttaat taacgcgcga atattcagcg ggagagcccc gttgaaaaca
     6541 ggaaagtttt taacctgaga ttgttaaaga tatattacag attaataata ttcttaaaat
     6601 gtggtaattt attaaatctg taataaaagc gtaaacaact gccgctaggc ttgctgatcc
     6661 cgcgcaacaa aacgccatgc tttgctcgca gatggttggc aaccgacgac agtcctgcta
     6721 aaacgttcgt ttgatatcat ttttcctaaa attgaatggc agagaatcat gagtgacagc
     6781 cagacgctgg tggtaaaact cggcaccagt gtgctaacag gcggatcgcg ccgtctgaac
     6841 cgtgcccata tcgttgaact tgttcgccag tgcgcgcagt tacatgccgc cgggcatcgg
     6901 attgttattg tgacgtcggg cgcgatcgcc gccggacgtg agcacttggg ttacccggaa
     6961 ctgccagcga ctatcgcctc gaaacaactg ctggcagcgg tagggcagag tcgactgatt
     7021 caactgtggg aacagctgtt ttcgatttat ggcattcacg tcgggcaaat gctgctgacc
     7081 cgtgctgata tggaagaccg tgaacgcttc ctgaacgccc gcgacaccct gcgtgcgttg
     7141 ctcgataaca atatcgttcc ggtaatcaat gagaacgatg ctgtcgctac ggcagagatt
     7201 aaagtcggcg ataacgataa cctttctgcg ctggcggcga ttctggcggg tgccgataaa
     7261 ctgttgctgc tgaccgatca aaaaggtttg tataccgctg acccgcgcag caatccgcag
     7321 gcagaactga ttaaagatgt ttacggcatt gatgacgcac tgcgcgcgat tgccggtgac
     7381 agcgtttcag gcctcggaac tggcggcatg agtaccaaat tgcaggccgc tgacgtggct
     7441 tgccgtgcgg gtatcgacac cattattgcc gcgggcagca agccgggcgt tattggtgat
     7501 gtgatggaag gcatttccgt cggtacgctg ttccatgccc aggcgactcc gcttgaaaac
     7561 cgtaaacgct ggattttcgg tgcgccgccg gcgggtgaaa tcacggtaga tgaaggggca
     7621 actgccgcca ttctggaacg cggcagctcc ctgttgccga aaggcattaa aagcgtgact
     7681 ggcaatttct cgcgtggtga agtcatccgc atttgcaacc tcgaaggtcg cgatatcgcc
     7741 cacggtgtca gtcgttacaa cagcgatgca ttacgccgta ttgccggaca ccactcgcaa
     7801 gaaattgatg caatactggg atatgaatac ggcccggttg ccgttcaccg tgatgacatg
     7861 attacccgtt aaggagctgg ccgatgctgg aacaaatggg cattgccgcg aagcaagcct
     7921 cgtataaatt agcgcaactc tccagccgcg aaaaaaatcg cgtgctggaa aaaatcgccg
     7981 atgaactgga agcacaaagc gaaatcattc tcaacgctaa cgcccaggat gttgctgacg
     8041 cgcgagccaa tggccttagc gaagcgatgc ttgaccgtct ggcactgacg cccgcacggc
     8101 tgaaaggcat tgccgacgat gtacgtcagg tgtgcaacct cgccgatccg gtggggcagg
     8161 taatcgatgg cggcgtactg gacagcggcc tgcgtcttga gcgtcgtcgc gtaccgctgg
     8221 gagttattgg cgtgatttat gaagcgcgcc cgaacgtgac ggttgatgtc gcttcgctgt
     8281 gcctgaaaac cggtaatgcg gtgatcctgc gcggtggcaa agaaacgtgt cgcactaacg
     8341 ctgcaacggt ggcggtgatt caggacgccc tgaaatcctg cggcttaccg gcgggtgccg
     8401 tgcaggcgat tgataatcct gaccgtgcgc tggtcagtga aatgctgcgt atggataaat
     8461 acatcgacat gctgatcccg cgtggtggcg ctggtttgca taaactgtgc cgtgaacagt
     8521 cgacaatccc ggtgatcaca ggtggtatag gcgtatgcca tatttacgtt gatgaaagtg
     8581 tagagatcgc tgaagcatta aaagtgatcg tcaacgcgaa aactcagcgt ccgagcacat
     8641 gtaatacggt tgaaacgttg ctggtgaata aaaacatcgc cgatagcttc ctgcccgcat
     8701 taagcaaaca aatggcggaa agcggcgtga cattacacgc agatgcagct gcactggcgc
     8761 agttgcaggc aggccctgcg aaggtggttg ctgttaaagc cgaagagtat gacgatgagt
     8821 ttctgtcatt agatttgaac gtcaaaatcg tcagcgatct tgacgatgcc atcgcccata
     8881 ttcgtgaaca cggcacacaa cactccgatg cgatcctgac ctgcgatatg cgcaacgccc
     8941 agcgttttgt taacgaagtg gattcgtccg ctgtttacgt taacgcctct acgcgtttta
     9001 ccgacggcgg ccagtttggt ctgggtgcgg aagtggcggt aagcacacaa aaactccacg
     9061 cgcgtggccc aatggggctg gaagcactga ccacttacaa gtggatcggc attggtgatt
     9121 acaccattcg tgcgtaaata aaaccgggtg atgcaaaagt agccatttga ttcacaaggc
     9181 cattgacgca tcgcccggtt agttttaacc ttgtccaccg tgattcacgt tcgtgaacat
     9241 gtcctttcag ggccgatata gctcagttgg tagagcagcg cattcgtaat gcgaaggtcg
     9301 taggttcgac tcctattatc ggcaccattt aaatcaataa gttacacatc attagtacgt
     9361 tccttatttc ttgactggga caaatttggg accgatgggt tcagaatcga gtctatttgc
     9421 cgtgcgtgtt cggtaaggtg attaggtgcg aggtgagcat atcgacgaac catttcgata
     9481 gactcccagc ctcccatttc ctgtaacact gataacggga ctccggcttg aaccagccaa
     9541 cttgcccagg tgtgtctcaa gtcgtgaaat ctgaaatcat caatacctgc tcgtctcagc
     9601 gccgctttcc aggctgtgtt tgcgtcatac cgcatcttcc tgactgttgg cgctttcgtt
     9661 ccgtctggtt tggtacagct ttccttatac acaaataccc aacggtgatg attcccgatt
     9721 tgttttttca atacgcgaca tgcagtatca ttcagcgcaa cgccaattgc gcggtttgat
     9781 ttactctctt ccgggtttat ccatgccacc cggcgctgca tgtctatttg ttgccattca
     9841 aggttgatga tgttcgagcg tcttaagcct gttgcaagtg caaattcaac aacagacttt
     9901 aatggctccg gacattcatc aatcagcctt tgtgcttcat gaggctccag ccagcggatc
     9961 cgtttattct ttggttgagg cactttaata attggtgcct tatccagcat tttccattca
    10021 cgctctgcgg ctcttagcag ggcctttata aatgaaagat gcgtagcctt cgttgcaacg
    10081 gacgctggtt ttggcgtgta ttctggaaca ggtttccctt tttttctgca tgcttctgcc
    10141 ctgagtttcc agttttcctc atgacgccgg ttcgtcattt tctgcattgc tgaataaatt
    10201 tttgattcag taatgtctct tagttgcatt cctgcgaaat gttgaagcca gaatccgatc
    10261 cggcttttgt catcgtccag tgatttttta tgtgctttct cttcaagcca cctgacacac
    10321 gcttcctcga acgttatatc aggaatttca ccaagtttgc tgacccgcca tgcttcagcc
    10381 tttagcttgt catggagttc tgtcgcctgc cttttgtcct ttgttccaag agactgttta
    10441 aatcttttac cgttcggcaa tgtgaaactg gcgtaccata tttcacctct gcggaagagt
    10501 gacattttct ttcctctgtt atgccatcac ccgcgctcac ctggacagta tgcagcggag
    10561 actgaagcgc cgcaatgcag gcttgtcgtg ttgtgaggta aggagattta ttcttagtgg
    10621 gatctttgcg tgttgcctgc agacgccctg tgcgtatcca gttaatggca gtcggtctgg
    10681 atatcttgag aaaatgacag gcctcatcta gcgtgaggct gtatggttcc attatttcac
    10741 ctcttgctgt gatattgttg aaaaatgaat gccagctcgt tgttgccaga cgatccaacc
    10801 gagagtcata tcccatgcca tgtattcgtt atcgccgttt tttgctctcc gactatctac
    10861 taagccaccg aaatgttttt ccataaataa ttcataggat tcgcgttcat ctggctctac
    10921 ttccagagat
//
LOCUS       DAJVUP010000144        10911 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.144, whole genome shotgun sequence.
ACCESSION   DAJVUP010000144 DAJVUP010000000
VERSION     DAJVUP010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10911
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.144"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(240..2099)
                     /gene="gss"
                     /locus_tag="OQQ75_003337"
     CDS             complement(240..2099)
                     /gene="gss"
                     /locus_tag="OQQ75_003337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutathionylspermidine
                     amidase/synthase"
                     /protein_id="HCS1977551.1"
                     /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF
                     RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ
                     AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ
                     WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN
                     KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH
                     ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD
                     SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE
                     NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ
                     IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF
                     PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI
                     YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK"
     gene            2304..3170
                     /gene="yghU"
                     /locus_tag="OQQ75_003338"
     CDS             2304..3170
                     /gene="yghU"
                     /locus_tag="OQQ75_003338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HCS1977552.1"
                     /translation="MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
                     LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIP
                     ALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGG
                     FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGN
                     VVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDAS
                     DFETNTEDKRQG"
     gene            complement(3293..3541)
                     /gene="hybG"
                     /locus_tag="OQQ75_003339"
     CDS             complement(3293..3541)
                     /gene="hybG"
                     /locus_tag="OQQ75_003339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation factor HybG"
                     /protein_id="HCS1977553.1"
                     /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL
                     LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA"
     gene            complement(3554..3895)
                     /gene="hypA"
                     /locus_tag="OQQ75_003340"
     CDS             complement(3554..3895)
                     /gene="hypA"
                     /locus_tag="OQQ75_003340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1977554.1"
                     /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV
                     RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG
                     DSLIVKSIEVE"
     gene            complement(3888..4376)
                     /gene="hybE"
                     /locus_tag="OQQ75_003341"
     CDS             complement(3888..4376)
                     /gene="hybE"
                     /locus_tag="OQQ75_003341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-2 assembly chaperone"
                     /protein_id="HCS1977555.1"
                     /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD
                     FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV
                     SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE
                     NA"
     gene            complement(4369..4863)
                     /locus_tag="OQQ75_003342"
     CDS             complement(4369..4863)
                     /locus_tag="OQQ75_003342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HCS1977556.1"
                     /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA
                     GMELLGDMANRDHLIIADAIVSKKNTPGTMMILRDEEVPALFTNKISPHQLGLADVLS
                     ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE
                     AIHD"
     gene            complement(4863..6566)
                     /gene="hybC"
                     /locus_tag="OQQ75_003343"
     CDS             complement(4863..6566)
                     /gene="hybC"
                     /locus_tag="OQQ75_003343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 large subunit"
                     /protein_id="HCS1977557.1"
                     /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI
                     VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH
                     DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA
                     SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL
                     AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG
                     KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS
                     WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE
                     STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI
                     GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP
                     RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV
                     L"
     gene            complement(6563..7741)
                     /gene="hybB"
                     /locus_tag="OQQ75_003344"
     CDS             complement(6563..7741)
                     /gene="hybB"
                     /locus_tag="OQQ75_003344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase cytochrome b subunit"
                     /protein_id="HCS1977558.1"
                     /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD
                     LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG
                     GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
                     VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF
                     IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLS
                     LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL
                     VAFNPGGGYAYFPTREELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
                     "
     gene            complement(7731..8717)
                     /gene="hybA"
                     /locus_tag="OQQ75_003345"
     CDS             complement(7731..8717)
                     /gene="hybA"
                     /locus_tag="OQQ75_003345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 operon protein HybA"
                     /protein_id="HCS1977559.1"
                     /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDS
                     TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE
                     NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP
                     KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL
                     ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK
                     LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES"
     gene            complement(8720..9838)
                     /gene="hybO"
                     /locus_tag="OQQ75_003346"
     CDS             complement(8720..9838)
                     /gene="hybO"
                     /locus_tag="OQQ75_003346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 small subunit"
                     /protein_id="HCS1977560.1"
                     /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT
                     NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK
                     HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW
                     GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN
                     RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ
                     FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA
                     GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE"
     gene            complement(10027..10314)
                     /locus_tag="OQQ75_003347"
     CDS             complement(10027..10314)
                     /locus_tag="OQQ75_003347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2623 domain-containing protein"
                     /protein_id="HCS1977561.1"
                     /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY
                     EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN"
     gene            complement(10433..10911)
                     /locus_tag="OQQ75_003348"
                     /pseudo
     CDS             complement(10433..10911)
                     /locus_tag="OQQ75_003348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
BASE COUNT         2663 a         2994 c         2696 g         2558 t
ORIGIN      
        1 agcattaccg ggcaaagtga aatatcattt tttaacgata aaaagagtgt tatttcttgt
       61 gtatcagaca ataagcattc attcaaaacc tttagaaata atcaaaacac aggtattcca
      121 ctggttaata tattcacata tgaaatgaat aaatattaga acatataaat attgaatatt
      181 ttgattaatc cccgtactga ttattcttca taatcagtac ggggttgcta caacatgtat
      241 tactttttca ccacaattaa cggttcaata tcactctctt ttttgatgac cagtgattca
      301 tcaccgcgca aacacgtccc accgtagttg ccgcccacgg tgaaggtaca tacctgaatg
      361 tatttaccgt ccactttcgg caaacaccac agttgctgat agatgttttt ctgctcggca
      421 aatttaccgc tggttttgtc cagcacctct tcatgatggc tgaccaggtc gatattgcta
      481 ccacagcgac cggcaatcgg tttcactgcg taacctgttt tcaccaattc atcattaaca
      541 gtgaaatcgg tatccagcag gtaacgatgg tgcgggaaca gcgaccagag gatcggcaga
      601 atcgctttgt tgccggggat caccgtccac agcggctcaa agactagcac ttccgggcgc
      661 agcaatacgt cgataagacg cacttcgttt tgcggatgac cggtacggat tggcaccgca
      721 gcaaactcac ggtcgctaac ttcacgaatc tgatcaaacg cggtttccca cgcccaggtt
      781 ttccacacgc agttaaccag tcgcccttcc ccatcaatca gttgcccggc agcatcccag
      841 cccagttcat ccaatccacg caagatacgc gtttcaaagc ccgcctggtg cagcgcctgc
      901 tccataaact gcgcgtgata gttttcctcg atatctttgt cctgcatgat atggacaaac
      961 ggacgtgcac gactgtgttt ccaggcacca gccaattcgt taatcagccc ttccgccgga
     1021 ttgaagccgt tgcctttata gccctgctcc gcccaacgtt cgaggatcaa gcccgcttcg
     1081 gtatgacagg aggcggagtc ggcgttgtac tcgtaaacct tcaggccacg ctcatccatg
     1141 cagaaatcca tacgaccagt gatcatatgg tgacggcgac gctgccagga gagacgcaaa
     1201 cgtggccaga ggattttcgg aatgtcgaac agcgccagca ggttgtcatc tttcagtacc
     1261 ttgtcggttg cgtgaagata catcaggtgc agctcgttgg tggctttaat tagctcctgc
     1321 tcggcactct cggtaatggt gtagtaatga taaggatcct gattgatcac ctgaccgttg
     1381 gcctgcacat aggcgttttg cagcggatct ttttcatcca gccatttacc gtcaaactgg
     1441 cctttgtttt ccaggcgcgc tccgctgatt ttcagcagct cgcctgcaat ttccggctgc
     1501 ggtaagctgt attcagtatc ttccgtctgg atcatccagc ccagaatggt ggtgtcatca
     1561 aaagtgtctt tcagggtata gcagccgttt tcgaccacca tctccagctc acgcgtccac
     1621 tgttgccctt gcggcaacgg ggaatgaatc acgttctgtt ccgcaatacg gactttgttg
     1681 ccatgcaatt gggtaatgat ggcgacatgg ccagtgtctt taaattcacc gcctttatcc
     1741 cagataagaa gcgcacccgc gaccggcgca cgcggcgagc cgttaggaaa tgcctgcaat
     1801 ggcaggatgt tgtcattaac cacttctcgc aggaagcgca gcgagaaaat ctcccacgcc
     1861 atacccacgt cagtaaagac cacaccgtaa ttcagaaaga gaaaacggcg agcaaattca
     1921 acgcattgcc acttgtggcc catatattcg tcgtcgatat agctacggaa tacggcgtca
     1981 tcttcgtatt cctgcggatc gagagaactg taatctgaag agtagattgc taccccacct
     2041 ggggcgtagc ccaataatgt cccgaacggg gcatcctggc tggtcgttcc tttgctcatc
     2101 actttacctt taacaataca acctaagcag ttggcgtaat tgttgtgctc tgattacctg
     2161 ctcagcgaca ttaaccggac agaggtcaga ctaatcatac acctcatcgc agcggctggc
     2221 gcaaagggtt aaaaaattca cattctgtac agcaagtgac ctgccacact gcttcaacac
     2281 taccactcag aaggcaactc actatgacag acaatactta tcagcccgcg aaagtctgga
     2341 cgtgggataa atccgctggc ggcgcgttcg ccaatatcaa tcgcccggtt tctggtccga
     2401 cgcatgaaaa aacgctgccc gttggcaaac acccattgca actttattcg ctgggaacgc
     2461 cgaacggtca gaaagtaacg attatgcttg aggagctgct ggcgctgggc gttactggtg
     2521 cagagtacga cgcctggctg attcgtattg gcgatggcga tcaattctcc agcggctttg
     2581 tcgaagtgaa cccaaactcg aagatcccgg cgctgcgcga tcatacgcat aatccgccga
     2641 tctgtgtgtt tgaatctggt tcgatcctgc tttatctggc ggagaaattt ggctacttcc
     2701 tgccgcagga tttggcaaag cgtactgaaa cgatgaactg gctgttctgg ttacagggcg
     2761 cggcaccgtt cctcggcggt ggttttggtc acttttacca ttacgcaccg gtaaagattg
     2821 agtacgccat caaccgcttt accatggaag ccaaacgtct gctcgacgtg ctggataagc
     2881 aactggcgca gcataagttt gttgcgggcg atgagtacac cattgcggat atggcgattt
     2941 ggccgtggtt tggcaacgtg gtgttaggtg gtgtgtatga tgccgctgag tttcttgatg
     3001 cgggcagtta taagcatgta caacgctggg cgaaagaagt aggcgaacgt ccggcggtga
     3061 aacgtgggcg tattgttaac cgcaccaacg gaccgctgaa tgagcagttg catgagcgcc
     3121 atgacgccag tgatttcgag acgaatacgg aagataagcg tcaggggtaa gggttggtgt
     3181 tcgtcgcagc aagccatcca ggccggataa ggcgttcacg ccgcatccgg caatcgtgca
     3241 caatgcctga tgcgacgctg ccgcgtctta tcaggcctac gaaagctaat catcacgcgc
     3301 tggtaatgtc gtaatccatt tggcgcagtg cgtctaatgt ggctttggct tcatcttcgt
     3361 cgatgatgct catggcaaat ccgacgtgta ccagcaccca ctggcccagt agatcggcag
     3421 ggttaccttc acaaatcagg gcgatattca cgtcgcgctt gataccacat acttcaacct
     3481 gcgcaagctg gtgaatatct tcaccgacag ccagcacctg gcctggaacg ccaatacaca
     3541 ttattaactc cggttattca acttcaatac ttttgacgat cagcgaatcg ccggtatcga
     3601 cacgcaaccg ctcgccgtga cagagcggac actgcgcatc gtgctgatga atctccacca
     3661 cctggctgca atcccagcac caggcctggg cgggtttata gacgatatgt aaatcgcacc
     3721 cttgcgccac cgttccgtgg cagacaattt caaaactaaa acggacggcg ctctcctcaa
     3781 cgcaggagag cgcgccaatt tccagccaca cggcggtgac gcgcttaaca tcgtgctgct
     3841 ccgcctgccg ttggataatt tcaacggcgc tctggcaaag cgacaactca tgcattttcg
     3901 ccactcctgc gaccaaacag cagggcgcga cgccctgcgt gtggtacatc cggattcgtg
     3961 actggcagcg aaaggatcat tcgtgcgcag tcatccgtca ggcgttggcc ctcttcaatc
     4021 gacatactgt gcgaaagcgg tgacatcagc gaacaggaga ggtattgcga aacaccgtcc
     4081 agttcgccaa cggtaaaggt catggtgcca tacggcagtt gcagaccaat tttttcactc
     4141 actttgcgca gcggccagag ttgatccggg ccggggaaga taactgcact cagcatccac
     4201 ggggtgatca cacaccccgt ccactgacct tcgaacagcg taaaatcaga aacatacacc
     4261 ggcattgaag gatgcagaaa agagagatcg tgcatcgaac gccgggcaat ttcttcaaac
     4321 gctgcctgta cttgcgcctt cggggaggtc tggaaacctg ctatctcttc agtcatgaat
     4381 cgcctcccgt gggatggctt ccacgcctga ttcgcgcagc gcagccagaa cctgctcaag
     4441 cgcaggttca atcattgctt caaccgtcgg cgttaagccg atgtgtggct ccagcgattc
     4501 cgggatcacg ccgaccaggg tcagcttttt cggaaactca ccggtgaagc gcagggccga
     4561 caatacgtcg gccaggccaa gctgatgcgg agagattttg ttggtaaaca acgccggaac
     4621 ttcttcatcc cgcaggatca tcatcgttcc cggcgtgttc tttttcgaca caatggcatc
     4681 cgcaataatc agatgatcgc gatttgccat gtcgccaagc agctccattc ccgccgtgcc
     4741 gccatcgagg atctcaacat aatccggcag aatgtatcgt tgctctaacg cttcgacaat
     4801 ccgcacaccg atggcttcat cggtcagcaa aatattgccg acccctaaga ctaaaatacg
     4861 cattacagaa ccttcactga aaccacttcg ttgccgtcgg catccactac gtgtaccgca
     4921 caggccatgc acgggtcgaa ggagtgaatg gtacgcacca cttccagcgg tttattcgga
     4981 tcagcaaccg gtgtacccac cagcgactgc tcgtaaggac cgacgtcatc attgaagtta
     5041 cgcggaccag agttccaggt tgatggaaca actgcctggt agttactgat aataccgtct
     5101 ttaataacca tccagtgaga gagcataccg cgcggcgctt cgaggaagcc aacacctttg
     5161 aactcacccg ttgccggaat gttcggtttc acaaaggtgg tgtgatcgcc tttgccgata
     5221 ttggtgatca gtgcactgta ttgattttgc aggatatcct gcaattcgca gcagtgaacg
     5281 gtacgaccaa taatacggcc cagcgtggag tgcagctgcg ccacttccag cgtgttgcca
     5341 gtcagtttct gataaatcgc aacgatttca ttcagtttgt tctgggtaga ttcgcgacct
     5401 gccgccagtt tcaccagcat attagccagc ggacccactt ctaccgtttt gccgtagaaa
     5461 gtcggtgatt tcacccagga atatttcccg tcgtcagacc aaccatcata agccggaatg
     5521 gtggtacctt cccacggtgc ctgcggcgct tcgtctttat accaggagtg cttcgcgctt
     5581 tcctgaatgc ctttgatcag gtattcatcg gaatgagaag tgatcggacg atacgaggac
     5641 agatccgcat tctcaatgta gccgcccggg aacaggaagc tgccgttttt actgtcggtc
     5701 gggaattccg gcacgctcag gtagttcacc gcacctttac cgcgcgtcag ccattccggg
     5761 tagaacgcgg caataactgc ggtatcaacc ttataaacct gttcaacaaa gtcgctcagc
     5821 ttgtcgatga aagacttgat gtacatcagg cgctcaaggt tcagcacgcc caaaccgtcg
     5881 aggttgatcg ggttcgcgac accacctacc gccaggttct gaatgtgcgg cgttttaccg
     5941 cccagcagcg ccacgacgcg gttagcgtca cgctggcact ccagcgcctg caggtagtgc
     6001 gctaccgcaa tcaggttcac ttccggcggc agtttcatcg ccgggtgacc ccagtagcca
     6061 ttggcgaaaa tacccaactg accgctggca accagatctt tgatcttgtt ctgaacttta
     6121 gtgaactctt ccggactgtt cagatgccag gtcgaaacgc ctttcagcat ttcggaggct
     6181 ttggttgggt cagcttgcag tgcagaagtg atgtccaccc agtccagcgc cgaaagctga
     6241 tagaaatgaa cgatatggtc atgcgtggtg tgcgcagcca gaatgatgtt acggatgtat
     6301 tgcgcgttaa ccggaacgtc gatattcagc gcactttctg ccgcacgaac ggaagacagc
     6361 gcgtgagtgg tagtacatac gccacagata cgttgcacaa tcatccatgc atcgcgcgga
     6421 tcgcggtttt tcacgatctc ttccatgccg cgccacatgg taccggaagc ccatgctttc
     6481 gaaacgacgc cattttcgat ttcgcaatcg atgcgtaaat gcccctcaat acgggttacc
     6541 ggatcaatag taattctctg gctcatgctt tgctcgcctc atgacgatta tgatcgtttt
     6601 gttttaaagg aggaagtatc ggcagtagac gaatgagtac gatgtaagcg caaatctcaa
     6661 tagccacaaa accaatagaa atcaacagtt cttccctggt cgggaagtag gcgtaaccgc
     6721 cgcccgggtt gaatgccacc agcgaatagg tcagacgcca ggttgcacaa cctaacagtg
     6781 cgctcagtgc tgacaggaac agcatgcggg aatcattacg cagcttcgcc acacgcagaa
     6841 cgaccagcgg gaagagcatc agcaggactt caatccagaa catcacggag tagaagtcac
     6901 cggcaaacgc taacgacagc ttgtcgcgat agataagctc gccaaagcgc agcacgataa
     6961 aaatcgccag caacacactg atggtgttgg tcagcttgac gaacagactc ttttcatccg
     7021 gaccgttgcc acgcagaccc gcctgcacca gcgaaccttc aaagatgaca atcgagaagc
     7081 ccatgatgaa cgccgtcagc agcgagaaca gcggcaacat ttcatagctc tgccacaacg
     7141 gatgcacctt gtagcccgcc gagatcatca gtgaccccat tgaagactgg tgcatggtcg
     7201 gcaacagcgc gccaagtgca atgatgaaga acatcacctt gttcagacgc ttgagagaaa
     7261 ccttccagcc cagacgttca aacagtgccg gagcaaactc cagtgccatc acgccgatat
     7321 agatggtcat acagaccgcc gtctcgaaca gtaccgagtt cacgttgaag tgacccggaa
     7381 tgtagaagta cggcaggttc cagtagcgac ccacgtcgat agtgatcgac aagccaccca
     7441 gtgagtaacc aaacagactc gccaacagcg ccggacgcac cagcggatgg tattgcccac
     7501 ggttaaagac gtataccgcc cacgccagcg cccagccgcc acaggcaaag ccggtaccaa
     7561 tcagcaggtc aaacgcgatc cacacgcccc acgggaagcc gccgttcagg tcagagacag
     7621 agcccagacc gaacaccaga cgcttcacaa tcaggagcat acagatgacg attaacggtc
     7681 caaaaatcat gaccggttta ctgatgattt tgccgcccag cggttgtgga tcatgactca
     7741 tgatcgtctc ctccgtcgtg atggtcgttt ttggtgttgc gacgaaccag cacggttaag
     7801 cccgccagca cagccagtgg tagcatcatg cctttataca gggtgtgttg aatattttcg
     7861 gaacgcgcac cggtagaaag atcgtccagt ttcggcaggt cgagattttc ataaggcaca
     7921 cccgtcagta ccagaacctg agtaccgccg ccctctttct cgccgtacag atgcggataa
     7981 tatttcggca ccgtatgcag gtaagtgtcg ccagatttca gcgtctgacg cggatagtgg
     8041 tattcgctgc caggcttcag cgccagacgt tttttcgcct ccgccatcag ctcttcacgc
     8101 gtaccgaaaa tcaccgcgcc cgccgggcac acttctacgc agccaggcag accgccttta
     8161 tcgagacgtt ccacaccttt ctggttgcac agctcgcact tatgcagcgc accaaacggg
     8221 ttgttgtagt cgtacttcgg cacgttgtac ggacaggcga ccatgcagta acggcaaccg
     8281 gtgcacacgt ctttgtcgta atggacaatg ccggttttcg gatctttttt cagtgcagag
     8341 accgggcaca cagagacaca gttcggatcg acgcagtgca tacactgttt cttaatgtac
     8401 gcgtagccgt tctcctcctg gtctttgttg acccctgtgc cgctggtcca cacctgaatg
     8461 atgttattgg tatacggcga cagtttgtcg ttgttcgacc aggtctgttc cccttgcggg
     8521 ttacgttcag ggaagttgat atcctgacac ttggtgacgc aagcctggca gcctacgcac
     8581 aaggtcgagt cgtacaacat ccccagcgat cccggaattg gcgggcggtt ttcagcagcc
     8641 gcatgactga cagacggcag cgcgcccgtc agcaatgccc cgcaggaggc tgctttaata
     8701 aaattacgtc tgttcacggt tattctcccc gtgagtcagc gttatctttc ttttgctgac
     8761 gacccagttc acgcaccgcc atcacgctga caccggcaac cagcccaacc acaccgccga
     8821 gcaaaccaat agcgcctgca gagacgttac cgccctcttt agcgttaaca tccggtttct
     8881 gtgaacgcgg agtctgattt tcgacgttgg caagctgatg gatgccttta tggaagccga
     8941 taccttcttc gttacagcca tagcatgggt gaccaatcgc taccggccac acgccgccaa
     9001 catcgcagaa ttgcagcgtt gagcagttgc cgtaagtttc tggcccttta cagccgaggt
     9061 ggtacaggca ccagccttca cggtggcctt catcaccgaa ctctttggca aaacgaccag
     9121 catcgaagtg cgggcgacgt tcgcagtgtt cgtgaatcag acggccatag gcgaaggtcg
     9181 gacgattttt gtcatccagt ttcggcggtt tgccgtaagt gatgatgtgc gcaacggtcg
     9241 cgaggaagtt gtgcgggttc ggcgggcagc ccggaatatt gataacggtt ttgcctggca
     9301 gaacttcttg caggctgact gcgccagttg ggttaactcc agctgcggca acaccgcccc
     9361 acgcagagca ggaaccgata gcgataatcg ctgctgcgcc ttctgccgct ttgcggatgt
     9421 gatccacaat cggctcacca gcaaccatgc aataaatacc gttatctttt aatgggatgg
     9481 aaccatccac aaccaacaca tactgccctt tgtacttctc aagtgcgtta tgtttgttct
     9541 cttcgacctg atgaccgaag gcggcggaaa gcacttcgtg atactccaga gagatagtct
     9601 ccagcacgag gttttctacc gttggatgcg ttgcacgaag cagagattcc gtacaaccgg
     9661 tgcactcctg cgcgccaatc cagataactg gcggacgctg cgggttagta accgattcgg
     9721 ccatctctgc agcggctttg ctacttaacc ccatggtggc ggctaatgct gcacaaagct
     9781 tcatgaaatc acgacggtta atgccgtgag aatggatgag ggtgttatct ccagtcattt
     9841 atagttattc cgttgcgaag acctggcata tattttgcct caatcgcaaa atcaataatg
     9901 cgatcgatgc gccatttacc acacatttat tatggttatc gatatcatga tactgcggcg
     9961 gggcgctaaa acgaagggaa gaagcattag tgtaattaat taaagcaaga taatacgtat
    10021 gtttgatcaa ttttcgaggc gataaccggc cataaaaaag cgcaacgtag aacaggaatt
    10081 attctcacga aagaaatcca ttaccatctc tttatccagt ccatagcggc gcgtcagaat
    10141 acccgcttcc caggcgctaa gctggcgatc tccggtcttt tcgtacatcc ggtgtgagta
    10201 gcctaataca aaaccgcgtt tataatcggc acagaatttt gtcacattaa ccgcactgtc
    10261 ggcatgcgtt gcttttaatc ccgccattaa gcctttacca aaatggttat tcatcgttca
    10321 cctcattcgc tatatattat catatatagc aatattttag gcaaagaacg acttttgcgc
    10381 acgctatttt ttcatgcttg tttaagacgt aatcccgtaa gagataaacc catcaggaga
    10441 gatatttatc gaaccatttc agcgtccttt gccaggcaag atcggcggca gatttgtcat
    10501 aacgaggcgt ggaatcatta tggaatccgt gattaacccc cggatagata tacgcctcat
    10561 agaccttatt attggctttc aacgccgcct cataagcggg ccagccctcg ttgattcggg
    10621 tgtccagttc cgcgaagtgg agtagtaaag gcgcttcaat cttcgccaca tcggcagtgg
    10681 gtgcctgacg accataaaac ggcaccgcgc aggccagttc cggatacgcg acagccgccg
    10741 cgttcgatac accaccgcca tagcaaaatc cggtaatacc cacttatgcc tgtcgcttgc
    10801 ggatagcgtt gcataaactc aattgcggca aagaaatcat tcatcagttt ggttggatca
    10861 acctgctgtt gcagctcacg acctttatca tcatttcccg gataacctcc a
//
LOCUS       DAJVUP010000145        10893 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.145, whole genome shotgun sequence.
ACCESSION   DAJVUP010000145 DAJVUP010000000
VERSION     DAJVUP010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10893
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.145"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..174
                     /locus_tag="OQQ75_003349"
     CDS             <1..174
                     /locus_tag="OQQ75_003349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415678.1"
                     /note="interacts RssB preventing the degradation of the
                     stress sigma factor RpoS; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS1977562.1"
                     /translation="IILQEKEYPITIYNIAPFNKNLWSLLKSSQECPPGESKITNKCL
                     HNSCIIKICSICY"
     gene            complement(242..1492)
                     /gene="icd"
                     /locus_tag="OQQ75_003350"
     CDS             complement(242..1492)
                     /gene="icd"
                     /locus_tag="OQQ75_003350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000444467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HCS1977563.1"
                     /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA
                     MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP
                     LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY
                     AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI
                     ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV
                     IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL
                     FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD
                     FERLMEGAKLLKCSEFGEAIIENM"
     gene            1664..2317
                     /gene="rluE"
                     /locus_tag="OQQ75_003351"
     CDS             1664..2317
                     /gene="rluE"
                     /locus_tag="OQQ75_003351"
                     /EC_number="5.4.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309634.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2457) synthase RluE"
                     /protein_id="HCS1977564.1"
                     /translation="MRQFIISENTMQKTSFRNHLVKRFSSQRSTRRKPENQPTRVILF
                     NKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG
                     KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER
                     KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWREATE"
     gene            2327..2788
                     /gene="nudJ"
                     /locus_tag="OQQ75_003352"
     CDS             2327..2788
                     /gene="nudJ"
                     /locus_tag="OQQ75_003352"
                     /EC_number="3.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase NudJ"
                     /protein_id="HCS1977565.1"
                     /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL
                     VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID
                     CCRWVSAEEILKASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI"
     gene            2842..3948
                     /gene="mnmA"
                     /locus_tag="OQQ75_003353"
     CDS             2842..3948
                     /gene="mnmA"
                     /locus_tag="OQQ75_003353"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HCS1977566.1"
                     /translation="MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD
                     GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC
                     NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSH
                     EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQP
                     GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQG
                     HEHPRLMSVGLIAQQLHWVDREPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEVIFD
                     EPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV"
     gene            3984..4625
                     /gene="hflD"
                     /locus_tag="OQQ75_003354"
     CDS             3984..4625
                     /gene="hflD"
                     /locus_tag="OQQ75_003354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HCS1977567.1"
                     /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII
                     DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA
                     KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS
                     PQVPAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL"
     gene            4629..5999
                     /gene="purB"
                     /locus_tag="OQQ75_003355"
     CDS             4629..5999
                     /gene="purB"
                     /locus_tag="OQQ75_003355"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HCS1977568.1"
                     /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL
                     QKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKE
                     KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ
                     YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHI
                     AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW
                     GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ
                     RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT
                     MVDELK"
     gene            6167..6838
                     /gene="phoP"
                     /locus_tag="OQQ75_003356"
     CDS             6167..6838
                     /gene="phoP"
                     /locus_tag="OQQ75_003356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PhoP"
                     /protein_id="HCS1977569.1"
                     /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHL
                     PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP
                     FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET
                     LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY
                     LFELR"
     gene            6838..8298
                     /gene="phoQ"
                     /locus_tag="OQQ75_003357"
     CDS             6838..8298
                     /gene="phoQ"
                     /locus_tag="OQQ75_003357"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PhoQ"
                     /protein_id="HCS1977570.1"
                     /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF
                     DKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV
                     PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA
                     VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL
                     RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT
                     HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS
                     RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK
                     YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR
                     EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE"
     gene            8374..9495
                     /gene="roxA"
                     /locus_tag="OQQ75_003358"
                     /gene_synonym="ycfD"
     CDS             8374..9495
                     /gene="roxA"
                     /locus_tag="OQQ75_003358"
                     /gene_synonym="ycfD"
                     /EC_number="1.14.11.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309600.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[50S ribosomal protein L16]-arginine
                     3-hydroxylase"
                     /protein_id="HCS1977571.1"
                     /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLA
                     MESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRE
                     LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLL
                     QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYV
                     LQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSR
                     HELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALD
                     ALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG"
     gene            complement(9544..10770)
                     /gene="pepT"
                     /locus_tag="OQQ75_003359"
     CDS             complement(9544..10770)
                     /gene="pepT"
                     /locus_tag="OQQ75_003359"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HCS1977572.1"
                     /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE
                     MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD
                     IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNI
                     PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV
                     GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLAGMKGTVERADMH
                     YIIRDFDRKQFEARKCKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD
                     IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK
                     AVQVIVRIAELTAQRK"
BASE COUNT         2695 a         2787 c         2722 g         2689 t
ORIGIN      
        1 attatccttc aggaaaaaga atatcctatt actatttata acattgcacc attcaacaag
       61 aatttatgga gtttactcaa aagcagtcaa gagtgtcctc caggagaaag caaaataaca
      121 aataaatgtt tacataatag ttgcattata aaaatatgct cgatatgcta ttaataatat
      181 ccacataaat aaaacaacgg gcgtgttata cgcccgtttc aatatttaac tcatggagag
      241 attacatgtt ttcgatgatc gcttcaccaa actctgaaca tttcagcagc ttagcgcctt
      301 ccatcagacg ttcaaagtca taagttacgg ttttcgcgtt gatagcacct tccatacctt
      361 taacaattaa atcagccgct tcagtccacc ccatatggcg cagcatcatc tcagcggaga
      421 ggatgataga gcctggattt actttgtcct gaccggcgta tttcggcgca gtaccgtggg
      481 tggcttcaaa cagggcgcat tcgtcaccga tgtttgctcc aggagcgata ccgataccgc
      541 caacctgcgc tgccagggcg tcagaaatgt agtcaccgtt caggttcata caggcgataa
      601 catcatattc agccggacgc agcaggatct gttgcaggaa tgcatcagca atcacgtctt
      661 taatgacgat ctctttgccg gtgttcgggt ttttaacttt cagccacggg ccgccgtcga
      721 tcagttcacc gccaaactct tcacgcgcca gctggtagcc ccagtcttta aacgcgcctt
      781 cggtgaactt catgatgttg cctttgtgca ccagagtcac agagtcacga tcgttagcaa
      841 ttgcgtattc gatcgctgca cgaaccagac gtttggtgcc ttcttccgaa cacggcttaa
      901 taccgatacc acaatgttcc gggaagcgaa ttttcttcac ccccatctct tcacgcagga
      961 atttaatcac tttctcggcg tcggcagagt ctgctttcca ttcgataccc gcataaatgt
     1021 cttccgagtt ttcacggaag ataaccatat cggtcagttc agggtgttta accgggcttg
     1081 gagtgccctg atagtaacgt accggacgca ggcagatgta gagatccagt tcctggcgca
     1141 gggcaacgtt cagagagcga ataccgccac caacaggagt ggtcagcgga cctttaatgg
     1201 caacgcgata ttcacgaatc agatcaaggg tttcagcagg cagccagaca tcctgaccat
     1261 aaacctgtgt ggatttttca ccggtgtaaa tttccatcca ggagatttta cgctcgcctt
     1321 tataggcttt ctcgactgca gcgtcgacca ctttcagcat ggctggggtt acatctacac
     1381 cgattccatc accttcaatg taagggataa tcggattttc aggaacgttg agtttgccgt
     1441 tttgcagggt gatcttcttg ccttgtgccg gaacaactac tttactttcc attcacctct
     1501 ccttcgagcg ctactggttt gctcgtctgc caccacgttg catatgcgtt tgcgtcctgc
     1561 gatacggatg ctttagagca attttttgtt aatgatttgt aattggcttg tcaatactac
     1621 cctattgttt gccgtcatga aagatgcgcg ttattaggct ataatgcggc aattcataat
     1681 ctctgaaaat accatgcaaa aaacttcttt tagaaatcac ctggttaagc gattcagctc
     1741 gcaacgttct accaggcgta aacctgaaaa ccagcccacg cgtgtgatcc tgttcaataa
     1801 accctacgat gttcttccgc agttcaccga tgaagccgga cgcaaaacat taaaagaatt
     1861 catcccggtt cagggcgttt atgcagcagg tcgtcttgac cgcgatagcg aagggttact
     1921 ggtgctgacc aataacggcg cgttgcaggc gcgtttaacc cagccgggca aacgcaccgg
     1981 gaaaatctat tatgtgcagg tggaaggtat tcccacacaa gacgcacttg aagccttgcg
     2041 caatggcgta accttaaatg atggccctac cctgcccgcc ggcgcggagc tggttgacga
     2101 accagcgtgg ttatggccgc ggaatccacc aattcgtgaa cgcaaaagta ttcccaccag
     2161 ctggctgaag atcaccttat atgaaggacg taatcgccag gtgcgccgca tgaccgccca
     2221 tgttggtttc cccacgctgc gactgattcg ttatgcgatg ggtgattaca ctttggataa
     2281 ccttgccaat ggcgaatggc gagaagcaac agaataagga tgcacaatgt ttaaaccaca
     2341 cgttaccgtt gcttgcgtag tgcacgcaga gggtaaattt ttagtcgttg aagagacgat
     2401 taatggtaaa gcgttatgga accaacctgc cgggcatctg gaagccgatg aaaccttagt
     2461 ggaagctgcc gcccgtgagc tatgggaaga aaccggcatc agcgcgcaac cgcaacactt
     2521 tattcgtatg catcagtgga ttgcgccaga taaaacgccg tttttgcgtt tcctctttgc
     2581 cattgagctt gagcaaatat gcccgaccca gcctcatgac agcgatatcg actgctgtcg
     2641 ttgggtcagc gccgaagaaa ttttaaaggc gtcaaatctt cgttcgccgc tggtggcgga
     2701 aagtatccgt tgttatcaaa gcgggcaacg ctatccgctg gagatgattg gcgattttaa
     2761 ctggcctttt acaaagggtg tcatctaaaa ggctgcgtga tagaatacgc cgccttgaag
     2821 ttcaatgtcg tgagtgatcc aatgtctgaa accgcaaaaa aagtaatcgt cggcatgtcc
     2881 ggcggtgtcg attcctccgt ttctgcctgg ctgttgcaac aacagggata tcaggttgaa
     2941 ggcctgttta tgaagaactg ggaagaagac gacggtgagg aatattgcac agcggcagcg
     3001 gatctggctg atgcccaagc tgtctgcgac aagctcggca ttgaactgca caccgttaac
     3061 tttgctgccg agtactggga caacgtcttc gaactgttcc ttgccgaata taaagccggt
     3121 cgcacgccga atccggatat tctgtgcaac aaagagatca aatttaaagc tttcctcgaa
     3181 tttgccgccg aagatttagg tgccgattat atcgctaccg gtcattacgt acgtcgggcc
     3241 gatgtcgatg gcaagagccg cctgctgcgt ggtctggaca gcaataaaga ccagagctac
     3301 ttcctttata cgctcagcca tgagcagatt gcgcaaagcc tgttcccggt cggcgaactg
     3361 gaaaaaccgc aggtgcgtaa gattgctgaa gatcttggtc tggtcaccgc gaagaaaaaa
     3421 gactctaccg gcatttgctt cattggcgaa cgtaaattcc gcgagttcct gggccgttat
     3481 ctcccggcgc aaccgggcaa aatcattacc gtcgatggcg atgaaattgg tgagcaccag
     3541 gggctgatgt atcacactct cggtcagcgt aaaggtctgg gtatcggtgg caccaaagaa
     3601 ggcaccgaag aaccgtggta tgtggtggac aaagacgtcg aaaacaacat tctggttgtt
     3661 gcgcagggcc atgaacaccc gcggctgatg tctgtcgggt tgattgccca gcagttgcac
     3721 tgggtcgatc gcgaaccatt caccggtact atgcgttgct cggtaaaaac ccgctatcgc
     3781 cagaccgata tcccttgcac cgtcaaggcg ctggacgatg atcgcattga agtgattttc
     3841 gatgaaccgg ttgccgccgt gacgccgggc cagtctgccg tcttctataa cggtgaagtg
     3901 tgcctcggtg gcggtattat tgagcagcgt ctgccgctgc cggtctgatt attatcttta
     3961 cttaaaacaa ggaagcagtg aacgtggcaa agaattacta tgacatcacc ctcgccctgg
     4021 ccggtatttg tcagtcggca cgcctggtgc aacaactcgc tcaccagggg cattgtgatg
     4081 ccgatgcgct acacgtctca ctcaacagta ttattgatat gaaccccagc tcgacgctgg
     4141 cggtttttgg cggtagcgaa gccaacctgc gcgtcgggct ggaaaccctg ctcggcgtgc
     4201 tcaatgccag cagtcgccag ggcttaaacg ccgaattaac ccgctacaca ctcagcttga
     4261 tggtgcttga gcgcaaactc tcctcagcga aaggcgcgct cgacactctg ggcaaccgga
     4321 tcaacggcct gcaacgccag ctcgaacact tcgatttaca gtccgaaacg ctgatgagcg
     4381 cgatggctgc tatctatgtt gatgtgatca gcccgcttgg cccgcgcatt caggtcaccg
     4441 gttcccctgc tgtactgcaa agcccacaag tgccggcgaa agttcgcgca accctgctgg
     4501 caggcattcg cgccgccgtg ctctggcacc aggtcggcgg cggacgtctg caactgatgt
     4561 tttctcgtaa tcgcctgacc actcaggcaa aacaaattct tgctcattta accccggagt
     4621 tgtgatctat ggaattatcc tcactgaccg ccgtttcccc tgtcgatgga cgctacggcg
     4681 ataaagtcag cgcgctgcgc gggattttca gcgaatatgg tttgctgaaa ttccgtgtac
     4741 aagttgaagt acgttggctg caaaaactgg ccgcgcacgc agcgatcaag gaagttcctg
     4801 cttttgctgc cgacgcaatc ggttaccttg atgcaattgt cgccaatttc agcgaagaag
     4861 atgccgcacg catcaaaacc atcgagcgta ccactaacca cgacgttaaa gcggttgagt
     4921 atttcctgaa agaaaaagtg gcggagatcc cggaactgca cgcggtttct gaattcatcc
     4981 actttgcctg tacttcggaa gatatcaata acctctccca cgcattaatg ctgaaaaccg
     5041 cgcgtgatga agtgatcctg ccgtactggc gtcaactgat tgatggcatt aaagatctcg
     5101 ccgttcagta ccgcgatatc ccgctgctgt ctcgtaccca cggtcagcca gccacgccgt
     5161 caaccatcgg taaagagatg gcaaacgtcg cctaccgtat ggagcgccag taccgccagc
     5221 ttaaccaggt ggagatcctc ggcaaaatca acggcgcggt cggtaactat aacgcccaca
     5281 tcgccgctta cccggaagtt gactggcatc agttcagcga agagttcgtc acctcgctgg
     5341 gtattcagtg gaacccgtac actacccaga ttgaaccgca cgactacatt gccgaactgt
     5401 ttgattgcgt tgcgcgcttc aacaccattc tgatcgactt tgaccgtgac gtctggggtt
     5461 atatcgccct taaccacttc aaacagaaaa ccattgctgg tgagattggt tcttccacca
     5521 tgccgcataa agttaacccg atcgacttcg agaactccga agggaatctg ggcctttcca
     5581 acgcggtatt acagcatctg gcaagcaaac tgccggtttc ccgctggcag cgtgacctga
     5641 ccgactccac cgtgctgcgt aacctcggcg tgggtatcgg ttatgcgctg attgcgtatc
     5701 aatccaccct gaaaggcgtg agcaaactgg aagtgaaccg tgaccatctg ctggatgagc
     5761 tggatcacaa ctgggaagtg ctggctgagc caatccagac agttatgcgt cgctatggca
     5821 tcgaaaaacc gtacgagaag ctgaaagagc tgactcgtgg taagcgcgtt gacgccgaag
     5881 gcatgaagca gtttatcgac ggtctggcgt tgccagaaga agagaaagcc cgcctgaaag
     5941 cgatgacgcc ggcaaactac attggtcgcg ccatcaccat ggttgatgag ctgaaataaa
     6001 ctcgtatcag tgccggatgg cgatgctgtc cggcctgctt attaagatta tccgcttttt
     6061 attttttcac tttacctccc ctccccgctg gtttatttaa tgtttacccc cataaccaca
     6121 taatcgcgtt acactatttt aataattaag acagggagaa ataaaaatgc gcgtactggt
     6181 tgttgaagac aatgcgttgt tacgtcacca ccttaaagtt cagattcagg atgctggtca
     6241 tcaggtcgat gatgcagaag atgccaaaga agccgattat tatctcaatg aacatttacc
     6301 ggatattgcg attgtcgatc tcggattgcc agacgaggac ggtctgtcac tgattcgccg
     6361 ctggcgtagc aatgatgttt cactgccgat tctggtatta accgcccgtg aaagctggca
     6421 ggacaaagtc gaagtattaa gtgctggtgc tgatgattac gtgactaaac catttcatat
     6481 tgaagaggtg atggcgcgaa tgcaggcatt aatgcggcgt aatagcggtc tggcttcaca
     6541 ggtcatttcg ctaccaccgt ttcaggttga tctctctcgc cgtgaattat ctattaatga
     6601 cgaagtgatc aaactgaccg cgttcgaata caccattatg gaaacgttga tacgcaataa
     6661 tggcaaagtg gtgagcaaag attcgttaat gctccaactc tatccggatg cggagctgcg
     6721 ggaaagccat accattgatg tactgatggg acgtctgcgc aaaaaaattc aggcacaata
     6781 tccgcaagaa gtgattacta ccgttcgcgg ccagggctat ttgttcgaat tgcgctgatg
     6841 aaaaaattac tgcgtctttt tttcccgctc tcgctgcggg tacgttttct gttggcaacg
     6901 gctgcggtag tactggtgct ttcgcttgcc tacggaatgg tcgcgctgat cggttatagc
     6961 gtcagtttcg ataaaactac gtttcggctg ttacgtggcg agagcaatct gttctatacc
     7021 cttgcgaagt gggaaaacaa taagttgcat gtcgagttac ccgaaaatat cgacaagcaa
     7081 agccccacca tgacgctaat ttatgatgag aacgggcagc ttttatgggc gcaacgtgac
     7141 gtgccctggc tgatgaagat gatccagcct gactggctga aatcgaatgg ttttcatgaa
     7201 attgaagcgg atgttaacga taccagcctc ttgctgagtg gagatcattc gatacagcaa
     7261 cagttgcagg aagtgcgaga agatgatgac gacgcggaga tgacccactc ggtggcagta
     7321 aacgtctacc cggcaacatc gcggatgcca aaattaacca ttgtggtggt ggataccatt
     7381 ccggtggagc taaaaagttc ctatatggtc tggagctggt ttatctatgt gctctcagcc
     7441 aatctgctgt tagtgatccc gctgctgtgg gtcgccgcct ggtggagttt acgccccatc
     7501 gaagccctgg caaaagaagt ccgcgaactg gaagaacata accgcgaatt gctcaatcca
     7561 gccacaacgc gagaactgac cagtctggta cgaaacctga accgattgtt aaaaagtgaa
     7621 cgcgaacgtt acgacaaata ccgtacgacg ctcaccgacc tgacccatag tctgaaaacg
     7681 ccactggcgg tgctgcaaag tacgctgcgt tctctgcgta gtgaaaagat gagcgtcagt
     7741 gatgctgagc cggtaatgct ggagcaaatc agccgcattt cacagcaaat tggctactac
     7801 ctgcatcgtg ccagtatgcg cggcgggaca ttgctcagcc gcgagctgca tccggtcgcc
     7861 ccactgctgg acaatctcac ctcagcgctg aacaaagtgt atcaacgcaa aggggtcaat
     7921 atctctctcg atatttcgcc agagatcagc tttgtcggtg agcagaacga ttttgtcgag
     7981 gtgatgggca acgtgctgga taatgcctgt aaatattgcc tcgagtttgt cgaaatttct
     8041 gcaaggcaaa ccgacgagca tctctatatt gtggtcgagg atgatggccc cggtattcca
     8101 ttaagcaagc gagaggtcat tttcgaccgt ggtcaacggg ttgatacttt acgccctggg
     8161 caaggtgtag ggctggcggt agcccgcgaa atcaccgagc aatatgaggg taaaatcgtc
     8221 gccggagaga gcatgctggg cggtgcgcgg atggaggtga tttttggtcg ccagcattct
     8281 gcgccgaaag atgaataaat atgtccatac ttcacgcatt acgttaagca tccgttataa
     8341 tcggttgcag ataccagcct gtggatgctt aacatggaat accaactcac tcttaactgg
     8401 cccgattttc ttgaacgtca ctggcagaaa cgcccggtgg tgttaaaacg cggctttaat
     8461 aattttattg acccgatctc tccagacgag ttggcgggtc tggcgatgga aagcgaagtt
     8521 gacagtcgac tggtcagtca ccaggatggc aaatggcagg tcagccacgg cccgttcgaa
     8581 agctacgatc atctcggtga aaccaactgg tcattactgg tacaggcagt gaaccactgg
     8641 catgagccga ccgccgcgct gatgcgaccg ttccgtgaac taccggactg gcgtattgat
     8701 gatctgatga tttctttttc tgtacctggc ggcggcgtcg gcccgcatct cgatcagtac
     8761 gacgtgttta tcattcaggg taccggacgt cgtcgctggc gagtgggcga aaagctgcaa
     8821 atgaaacagc actgcccaca tccggatctg ttacaggtcg atccgttcga agccatcatc
     8881 gatgaagagc tggagcctgg tgatattctt tatattccgc caggattccc gcatgaaggc
     8941 tacgcgctgg aaaatgcgat gaactattcc gtgggctttc gcgcgccaaa tacacgggaa
     9001 ctgattagtg gatttgccga ttatgtgctg caacgtgaac tgggcggcaa ctactacagc
     9061 gatcctgatg ttccacctcg cgctcatcct gcggatgttc tgcctcaaga gatggataaa
     9121 ctgcgtgaga tgatgctcga attgatcaac cagccggaac actttaagca atggtttggc
     9181 gagtttatat cccagtcacg tcatgaactg gatatcgcgc cgccggaacc gccttatcag
     9241 ccagatgaaa tctacgatgc gctgaaacaa ggtgatgtgc tggtgcgcct gggtggtctg
     9301 cgcgtattgc gcattggcga cgacgtgtat gccaatggtg agaagatcga ttccccgcac
     9361 cgtccggcac tggatgcact cgccagcaac attgcgctga ctgcggagaa ttttggcgat
     9421 gcgctggaag atccgtcatt cctcgcgatg ctcgcggcgc tggtcaatag cgggtattgg
     9481 ttcttcgaag ggtaagtttg gatttaagcc ggatgcggca tcacatgccg catccctttt
     9541 cgcttacttc cgttgcgccg ttaactcggc aatacggacg atcacctgca ccgctttttc
     9601 cataccttcc agagtcacaa actcatgctt accatgatag ttgtaaccgc cagtgaacaa
     9661 gttcgggcac ggtaatccca taaacgacaa ctgcgcgccg tcggtaccgc cgcggatcgg
     9721 tttcagttcc ggttcaatat cgcagtcacg cattgcctgc tgggcgatat cgagaatatg
     9781 cggatgctca accactttct cgcgcatatt gtagtaactg tcttcaatca ccagttcaat
     9841 gtagcaatca ggatgtaacc ctttgcccac ttttttggcg atctccatca ttttacattt
     9901 acgcgcttca aactgtttac ggtcgaaatc acggatgatg tagtgcatat cggcccgttc
     9961 aacggtgcct ttcatgcccg ccaggtgata gaaaccttca tagccttctg tcatttccgg
    10021 gctttcatcc gccggaactt ccgcatgaat acgtgccgcc agcgacagcg catttaccat
    10081 cactcctttc gccgtgcccg gatgaacatt gttaccgaca attttgatat tgaccgatgc
    10141 ggcgttgaag ttttcaaact ccagttcgcc tacgccacca ccgtcaacag tgtaagccca
    10201 gcgggcatcg aaggcatcaa catcaaaatg tttcgcccct ttgcccactt cttcatccgg
    10261 ggtaaaggcg acgcgaatat caccatgcgg aatgtttttc tgttgcaata ccgccagcgc
    10321 ggtcatgatt tctgcaatac ctgctttgtc atcggcacct aacaaggttt taccatcggt
    10381 ggtaatcaat gtctgaccca gtagctgatg cagcaccggg aacataaccg gtgataaaac
    10441 ttcatcgccg atacccagcg caatatcgcc accgcgatag ttttcaacaa tttgcggatt
    10501 aacatttttg ccgctgcaat ccggtgaggt atccacatga gaaataaagc caatcgccgg
    10561 gatatcgcca gggacgttag ccggtaacgt cgccatcaaa gtgcccttct cacttaaggt
    10621 cacattgata agccccattt cttcgagctg ctctttcagc agatgcaata acttccattg
    10681 gccttccgtg ctgggaacct gtctcacccc tgcttttgat tgggtatcca gagacacgta
    10741 gttcaaaaat cgctcaagta gtttatccat gtagtcaccc tcactttttg tgacaacatt
    10801 attaagaagc aagaaaagac aaatattgcg tcaggtcact tttacccctg caagcgggaa
    10861 tatttatcag cattacctta atgaatataa agc
//
LOCUS       DAJVUP010000146        10650 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.146, whole genome shotgun sequence.
ACCESSION   DAJVUP010000146 DAJVUP010000000
VERSION     DAJVUP010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10650
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.146"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            311..1609
                     /gene="kgtP"
                     /locus_tag="OQQ75_003360"
     CDS             311..1609
                     /gene="kgtP"
                     /locus_tag="OQQ75_003360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HCS1977573.1"
                     /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC
                     SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM
                     MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF
                     YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL
                     DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM
                     HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVS
                     SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYV
                     ALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL"
     gene            complement(1606..1929)
                     /locus_tag="OQQ75_003361"
     CDS             complement(1606..1929)
                     /locus_tag="OQQ75_003361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417081.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiM family lipoprotein"
                     /protein_id="HCS1977574.1"
                     /translation="MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNE
                     YSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVW
                     QLTRH"
     gene            complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="OQQ75_003362"
     CDS             complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="OQQ75_003362"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HCS1977575.1"
                     /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI
                     ASAKQRICIVALYLEQDDGGKGILNALYKAKRQRPELDVRVLVDWHRAQRGRIGAAAS
                     NTNADWYCRMAQENSGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL
                     HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF
                     RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL
                     PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRLFLSR
                     LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD
                     PQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI
                     L"
     gene            complement(3444..6104)
                     /gene="pat"
                     /locus_tag="OQQ75_003363"
     CDS             complement(3444..6104)
                     /gene="pat"
                     /locus_tag="OQQ75_003363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysine acetyltransferase"
                     /protein_id="HCS1977576.1"
                     /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV
                     LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA
                     PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS
                     NTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV
                     SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA
                     VETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHV
                     AISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKH
                     HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR
                     ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE
                     AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQA
                     RIHGLLVQSMANRAGAQELRVVVGHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN
                     LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG
                     SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ
                     QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR
                     AISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVA
                     LARKLGFNVDIQLEEGIVGLTLNLAQREES"
     gene            complement(6136..6834)
                     /gene="tapT"
                     /locus_tag="OQQ75_003364"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
     CDS             complement(6136..6834)
                     /gene="tapT"
                     /locus_tag="OQQ75_003364"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
                     /EC_number="2.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311476.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-uridine aminocarboxypropyltransferase"
                     /protein_id="HCS1977577.1"
                     /translation="MTENTVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCS
                     TITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNP
                     DYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS
                     VDLSRLSAYRLREALAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKT
                     QHLGSITAEQLESV"
     gene            complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="OQQ75_003365"
     CDS             complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="OQQ75_003365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HCS1977578.1"
                     /translation="MNTVCTHCQSINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET
                     LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF
                     GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL"
     gene            7529..8566
                     /locus_tag="OQQ75_003366"
     CDS             7529..8566
                     /locus_tag="OQQ75_003366"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1977579.1"
                     /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRA
                     DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR
                     QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA
                     ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC
                     AHFGVKGVVVQDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTS
                     SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV
                     LLGEWWRQNKA"
     gene            complement(8614..9303)
                     /gene="ung"
                     /locus_tag="OQQ75_003367"
     CDS             complement(8614..9303)
                     /gene="ung"
                     /locus_tag="OQQ75_003367"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HCS1977580.1"
                     /translation="MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDV
                     FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPG
                     FTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV
                     FLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPI
                     DWMPVLPAESE"
     gene            9608..9991
                     /gene="grcA"
                     /locus_tag="OQQ75_003368"
     CDS             9608..9991
                     /gene="grcA"
                     /locus_tag="OQQ75_003368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007728348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HCS1977581.1"
                     /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVV
                     AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVIARTFTESL"
     gene            complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="OQQ75_003369"
     CDS             complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="OQQ75_003369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/O-acetylserine transporter"
                     /protein_id="HCS1977582.1"
                     /translation="MTPTLLSAFWTYTLITAMTPRPNNILALSSATSHGFRQSTRVLA
                     GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA
                     KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW
                     ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY"
BASE COUNT         2651 a         2703 c         2736 g         2560 t
ORIGIN      
        1 aaaggccatc cgtcaggatg gcctttttgc attggcgcag aaaaaatgac tgatgcgacg
       61 ctgcgcgtct tatactccca catatgccag attcagcaac ggatgcggtt tccccaactt
      121 gcctacttcc atacgtgtcc tccttaccag aatttatcct taagctcctc aataaccatt
      181 ttcctgctaa ctaaattcat ggttaatgtt gcataataat acgtaacaaa tgtataacat
      241 tttctttacc aaaagaaata aacaaaagtg accaacaaaa gcatcggatt acggcaggag
      301 acataatggc atggctgaaa gtactgtaac ggcagacagc aaactgacaa gtagtgatac
      361 tcgtcgccgc atttgggcga ttgtgggggc ctcttcaggt aatctggtcg agtggttcga
      421 tttctatgtc tactcgttct gttcactcta cttcgcccac attttcttcc cttccgggaa
      481 cacgacgact caactactac aaacagcagg tgtttttgct gcgggattcc tgatgcgccc
      541 aataggcggt tggctatttg gccgcatagc cgataaacat ggtcgcaaaa aatcgatgct
      601 gttatcggtg tgtatgatgt gtttcggatc gctggttatc gcctgcctcc caggttatga
      661 aactataggt acgtgggctc cggcattatt gcttctcgcg cgtttatttc agggattatc
      721 cgttggcgga gaatatggca ccagcgccac ctatatgagt gaagttgccg ttgaagggcg
      781 caaaggtttt tacgcatcat ttcagtatgt gacgttgatc ggcggacaac tgctagccct
      841 actggttgtc gtggttttac aacacaccat ggaagacgct gcactcagag agtggggatg
      901 gcgtattcct ttcgcgttag gagctgtgtt agctgttgtg gcgttgtggt tacgtcgtca
      961 attagatgaa acttcgcaac aagaaacgcg cgctttaaaa gaagctggat ctctgaaagg
     1021 attatggcgc aatcgccgtg cattcatcat ggttctcggt tttaccgctg cgggctccct
     1081 ttgtttctat accttcacca cttatatgca gaagtatctg gtaaatactg cgggaatgca
     1141 tgccaacgtg gcgagtggca ttatgactgc cgcattgttt gtattcatgc ttattcaacc
     1201 actcattggc gcgctgtcgg ataagattgg tcgccgtacc tcaatgttat gtttcggttc
     1261 gctggcagcc atttttaccg ttcctattct ctcagcattg caaaacgttt cctcgcctta
     1321 tgccgctttt ggtctggtga tgtgtgccct gctgatagtg agtttttata catcaatcag
     1381 tggaatactg aaggctgaga tgttcccggc acaggttcgc gcattaggcg ttggtctgtc
     1441 atatgcggtc gctaatgcta tatttggtgg ttcggcggag tacgtagcgt tgtcgctgaa
     1501 atcaatagga atggaaacag ccttcttctg gtatgtgacc ttgatggccg tggtggcgtt
     1561 tctggtttct ttgatgctac atcgcaaagg gaaggggatg cgtctttagt gacgggtcag
     1621 ttgccagacg gtatagccgg tgcttgcacc ggcgacatcc caggccaaat ccttccagct
     1681 ccagccgctc ccttcggggc ggctatccca aagctctttt gacgccccca aactgacaga
     1741 gaacatcaat ccaaacatgg cactgcgatc ccggctcatc ccctgatgct gtgaatattc
     1801 atttccggcg gcggaaagca tcgccgaggc gataaagtgt tgagctttat cctgcccgct
     1861 ccagctatcg ttagccatat ggctgcatcc agaaagtaac aatagcgaac agacaaaaag
     1921 aatacgcaaa acgtggcctc caaaaaacaa accccgtaca ggacggggtt gtgattacag
     1981 gatgcggcta attaatcggt cgatgcggat acggcgcaaa cggcggatga gtttacgaac
     2041 cttcaccgga taatcggcaa tactttgcag atcgcgatag tgcttaacga tggtggtatg
     2101 ctcgcggatc agctccagtt ctttctctcg ctgcggcgca agctccagtt gtggatcgtg
     2161 gatcaaaatg gcgttttcca gatccagacg ccaggcgcgc gggttcaggt tattaccggt
     2221 gatcaacatc cacttatcat caacccacat ccctttcagg tgataggtgt tgtcgtcatc
     2281 tttccataac cgaaccacta gctggtcagt attgacgtaa tactgcaaac ggctcaggaa
     2341 aagacgcaga ttgatctcat agagataagg caatgcgcca attatcttga aaggttcatc
     2401 ttccggaatg tagaagtcgt tcgcggtttt atcaccaaca ataatttcga cctttttccc
     2461 ttcgcgcagc aactggataa tattgcgcac aaggattgct ggcaggttga agtatggcgt
     2521 acagatggtt agtttctgct cggcacaagg cataagatgg aaaatggtct tgttcaacag
     2581 actcgatttc cccagcccca ctagcggcgt tacggaaagc tgatcgttgt cggcatcgcc
     2641 ctggaaatga taagcggcat cacgcagctc ctggcggaac agacgaatat cgttcttgat
     2701 ttccgggctt tttggccgat taacatcatc cagacgatta acgccgcggc cattcataat
     2761 attctgtgta acccattcaa acataatgtc tgacatctta cggttacgga taagatgata
     2821 acggtcgtag cgatatttat cgtgctgatg caggtaaaca tcgttcaggc tggcaccgct
     2881 ataaagtacg ctatcgtcga tgataaagcc tttaaagtgc agaacaccaa gggcttcacg
     2941 ggtattgatt ggaacgccat aaaccggaac atctacgccc gaattttcct gcgccatgcg
     3001 gcagtaccag tcagcgttag tgttagatgc cgcagcgcca atgcgtccac gttgtgcacg
     3061 atgccagtcg accagcaccc gcacatccag ttccggacgc tgccttttag ctttatacaa
     3121 cgcgttcaga atgcctttgc caccgtcatc ctgttcgaga tacagggcga caatgcaaat
     3181 gcgctgcttc gcgctggcta ttttttccag cagcgtctcc cggaagtcgg cgggagcgta
     3241 aaagaaatcg acatcatcaa ctgattgaga aatcttgggt agttgggcaa ggtgttgttg
     3301 atgtttatta cgcttaaatt ttgacaacat cacagtgcat ttcttctctg ttcattgaag
     3361 gatcctctgt gcaatgcaga cgacataagc gggcaataat aacaccagtc ccgattaagt
     3421 agtcaacatt tccagtacct tactcatgat tcctcgcgtt gggcaagatt tagcgtaagc
     3481 ccaacgatcc cctcttcgag ctggatatca acgttaaacc cgagcttgcg ggctagcgcc
     3541 accatgccac gattgtttgg catcgtaata ccattcagac gttgtagtcc gtgatctcgc
     3601 gtataggtaa tcaacttttc cattaagcgt cgacctaagc ctaacccttt gagatccgag
     3661 cgaaccagca cagcaaattc ggcatcgatg ttatcaggat cggaaatcgc acgcgtgacg
     3721 ccgaggatct cttccgtttg atcaatacgt cgtaccgcta caaacgccat ttcccgatcg
     3781 tagtcgatct gtgtcatgtt ggctaaatct tcatgggtaa attcgttgat ctcgctaaag
     3841 tagcggtaat aaagatcttc tttggtgact cgcgaaatga attgctgaag ttgtggctca
     3901 tcttctggca aaatcgggcg gaacaagcag cgttcaccgt ttttcaattc tacccattct
     3961 tccagctgat gcggataagg gcgcactgcc agccgactct cgttatcgcc ttcaaacggc
     4021 gagatatcca gcgtgacatc cagcgcggta aattcactgc cagaagccag caaaggatga
     4081 atatccagac gctgaatttc cgggcaatcg acaatcaagt tggaaacctg caccagaagc
     4141 tggctcaagc ctgcaacatc caatgggcgt agcgcactgc gcgcacgaat ctttttactt
     4201 ttgatcccct gaataaccag atagcgggcc aggttcatgt tcagcggcgg cagtgcgacg
     4261 acggcttgat cttcaggacg ccactccaca ccgccttcac ccagcatgat caacggcccg
     4321 aaaaccggat cgtgcccaac cacaacccgc aactcctgag cgccagcacg gttagccata
     4381 ctttgcacca acaggccgtg gatccgcgcc tgcggccagg ccatttttac gcgatcgaaa
     4441 atggcgtttg ccgcttgctg gacttcattg gctgtacgca agtacagcat gacgccctga
     4501 acttccgatt tatgtggaat atccggcgaa cgcaatttca gcgccaccgg ataaccaatc
     4561 tgttcggcaa tatgcaccgc ttcggtgcta tcgctggcaa tccaggtagg gagcgtgttc
     4621 atgccatacg cttgcaggat gggctgaact tcatgggtat cgagcgacgt agccccttcg
     4681 gcaatcgcct gttgcaacag aagatgcgct tctgcggtat tggaagtcag attgctgggc
     4741 aacgccggcg tttcgcgtag ttgcttctga ttacgccggt actccaccat atgcataaaa
     4801 gcagtgatgg ttccttccgg ggtacggtag gtcggcagcc cggcttcgct gaataaacgt
     4861 cgtgcctctt gcgaggagtg ctcgccgcac cagttcgtca gcaaagagac atatttgctg
     4921 cggggatgat gctttaccgc ttcaattaat acttgcgcgc tttctgttgc gggagcagcg
     4981 gcgctgggcg aatgaataac catcagcgcg tcaaaatcct ggctgtggag cagaatatcc
     5041 agcgttttaa tatagtgctc actgctggcg tcatcgcgta gatcgagcgg gttagatatt
     5101 gccacatgtt ctggcagtgc atcgcgcagt ttctggcagg tttcttcgct tagcgttgcc
     5161 agcttgccat tgcgtgacca taaggcatcc agcgccagcg cggcaggcgc agcaccgttg
     5221 ctgataatca tcagccggtc gccacgtagc gggcgcatat ggctaagggt ttccaccgcc
     5281 gaaaacagct cgtgggtgtc ctgtacccgc aacaaaccgg cacgctgaat agccgcatcc
     5341 catgccgggt ccattcctgc cgtggtgttg agcagtcgct gtgccgccgg gctacgtccg
     5401 cttttaatca ccagaatcgg tttattacgc gaggcactac gggccgccga aacaaagcgt
     5461 cgcgcgtcgc ttaactgttc gagatagagc aggatggcgc tggttttact gtcgcgtgcc
     5521 agatagtcaa gcaattcatc aacgtcgata tccaggctgt cgccgagcgc aataaagtag
     5581 gaaaagccca tcttacgctg ttgcgcccag tcgaggatgg tgttggagac ggcagccgat
     5641 tgcgaaataa acgccagctt gccgcgttta atcggcacag gcgaaaagct ggcattcaga
     5701 ccttgccagg gagccagtaa acccagactg tttggtccaa gcaggcgcat gttatggcgc
     5761 agggcgcagg cgcggagatc ttcgtgttgc gatgccgggg cggaaagaat aatgcaggtt
     5821 ttacagcctt tctcgccgag ctcttccaga agagcaagat tacggctggc attggtacat
     5881 aaaaccgcaa ggtcgggtgt aaagggcaag ctggcaatat ccggccaggc caacacaccc
     5941 aacaccgctt tccaggctgg cgtcaccggg agtaccggtc cgttaaagcc tcccgccagc
     6001 aggttacgca tcatcaggta acctgcgcga ttgggtttca tcgacgcgcc aattaccgct
     6061 atcgattttg gtcgcagtag tgcttccagt cctcgctgac tcataccggt ctcccgcaga
     6121 agtgaccgaa tgattttaaa cgctttctaa ctgttctgct gtgatgctac ccagatgttg
     6181 cgttttccct gccagatagc gtgttttaaa gcgggtaaaa tgctcgccta accctgctgc
     6241 cgccccggta tcgccggcca tatctaacag tgcgatggct acctcggcag tacaatattg
     6301 gccttcagcc agggcttcac gcaggcgata ggcagaaagc cgggaaagat cgacggaaat
     6361 gacgggaaga ttatccagat acggactttt acgaaacatc ttgcgagctt ccggccaggt
     6421 accatcgagc atgataaaca gcggtggctt accggcaggt ggtgtgaaga tcacttcccg
     6481 ttgctcatca gcatacgagg cgggaaagac caccattggc tgataatccg ggttttgtac
     6541 cagatccagc aaatcctgcg agggttcggt acgcgaccat tgaaacgcaa cggtatcagg
     6601 caaaatatca gcaatcagac gcccggtatt actgggcttc attggctcgg tgtcgaacat
     6661 cagcaaacag aagcgacttt ttgcttgtgc tggggtaatt gtcgaacaga gacataattt
     6721 ctctggcaaa agacagcgtt ggcagcgacg aacgcgatta ccgcgggcaa gaaaaggacg
     6781 tgttgcgcgc gcaatacgct cggcgcgtaa ctggagaaca gtgttttcgg tcataagaga
     6841 gcgtcgaaaa aacgccattg tcgcagagga gaaaacgggg cacaagatgc gccccggtaa
     6901 gattaaagag attcgttcag ccagctatcg aacggagctt tcggtactgc gccattaagc
     6961 atgtcgacaa cctgaccgtt tttgaaaatc atgatcgtcg gtatactacg aattccaaag
     7021 cgactgctca attcacgttc agcttcggta ttcactttca caaagcgcac tttaccgcta
     7081 cgctcttgcg cgacatcttc aaaaattggt gcgaaattac ggcaggggcc gcaccacggt
     7141 gcccagaagt cgatcaccac aggtagatca tccttcagca atttgtcgag tgtttcaccg
     7201 gtcgcattaa tcacctctcc gtcaaacaag tcgtgaccgc agcgtccgca ttttgccgca
     7261 tcttcgatcc gatcgtcggg aatgcgattg atggactgac aatgggtaca aacggtattc
     7321 ataactaacc tcgggatgag taaggagact tatcggcaac gacgccggta tgtttctaat
     7381 atgttacata ttatcgggga cattgttcca gacaacaatc tgttttattc aataggtatg
     7441 atagtcgcag gctttggtac gaaatcatgg agaaccgcgc ggacttcggg taatctgcgc
     7501 gcttcgcgca gcgctggtgg agaaaagcat gaacgatgaa atgaaaggta aaagcggcaa
     7561 ggtcaaagtg atgtatgtcc gcagtgatga tgattctgat aaacgtaccc acaacccgcg
     7621 taccgggaaa gggggcgggc gtccaggaaa atctcgtgct gacggtggcc gtcgccccgc
     7681 ccgcgatgac aaacagagtc agccccgtga ccgcaagtgg gaagattcgc cgtggcgcac
     7741 ggtttcccgc gcgccgggtg atgagacgcc ggaaaaggcc gatcacggtg gcatcagtgg
     7801 taaaagtttt attgatccgg aagtgttgcg tcgtcagcgt gcggaagaaa cccgcgtcta
     7861 cggcgaaaac gcctgtcagg cactgttcca gagccgtccg gaagcaattg ttcgcgcctg
     7921 gtttatccag agcgtaacgc cacgttttaa agaagccttg cgctggatgg cggcaaaccg
     7981 caaagcgtac catgtggtgg atgaagctga attgacaaaa gcgtcaggca cggaacatca
     8041 cggcggcgtt tgcttcctga tcaaaaagcg taacggtaca accgtgcagc agtgggtaag
     8101 ccaggcaggc gcgcaggatt gcgttctggc actggaaaac gaatctaacc cgcataacct
     8161 gggtggcatg atgcgcagct gcgcgcactt cggcgtgaaa ggtgtcgtgg tgcaggatgc
     8221 ggcactgctg gagtcggggg cggctatccg taccgcagaa ggcggcgcag agctcgttca
     8281 gtcgattact ggcgacaaca ttgttaacgt gctggatgat ttccgtcagg caggttacac
     8341 cgtagtgacc acttccagcg agcagggtaa accgctgttc aaaactagtc tgccagcgaa
     8401 aatggtactg gtgctgggtc aggaatatga agggttaccg gatgccgcac gcgatccgaa
     8461 cgatctgcgc gtgaagattg acggtacggg caacgttgcc gggctgaata tctctgtcgc
     8521 aaccggcgtt ttgcttggtg aatggtggcg tcagaataaa gcctgataaa tcagccgggt
     8581 ggcaactctg ccatccggca tttccccgca aatttactca ctctctgccg gtaatactgg
     8641 catccagtca atcggcgtct cgccacgttg ttccagccac tgatttgcca gcacaaaatg
     8701 gttgcagcca aagaatccac gatgcgccga aagcggcgac ggatgcggtg ctttcagtac
     8761 atgatggcgt tgcttatcta taatcgcccc tttcttttgc gcatgtgatc cccacaacaa
     8821 aaacaccacg ccttcgcggt gctggttaat caggctgatg actttatcag taaacgtctc
     8881 ccaaccgagg ctggcgtggg aatgcgcctg acctgcgcga accgtcaaca cagtattgag
     8941 cagcagaacg ccctgacgcg cccagctttc gagatagcca tgattagggc gggtgaagcc
     9001 cggaatagta ttttccagct ctttatacat attcaataat gacggaggaa tggcaatgcc
     9061 gggacgaacg gaaaatgcca gaccatgcgc ctgtcccggt ccgtgataag gatcctggcc
     9121 gagaatcacc actttaacgt cacccaactc ggtaaagcgg aacgcgttaa agacatcttt
     9181 ttgtggtgga tagatagtga cgccggactg ccgctcgctg gcgacggtct gaagggtatt
     9241 aagaaaataa ggttgttgct tctcttcagc cagcacgtca tgccaggtta attcgttagc
     9301 catctcgctc tcctgcgaat cttcaatccg cctagcttaa ctgcttcttt ctacagaaca
     9361 aaatcatgct cattttttag acttaaacga gtgcaaaaaa atgtaaattg gtaaaatttc
     9421 acacccgcat aagttgatgt aaaacaataa aatccattta cgaccacaat cgatgtgtgg
     9481 tttttattga tttaaatcaa agaatcaagg gtggttgagg agtatatata cactcaagca
     9541 acaatggttt taccaattag ccgcgacagg ctgaacaaat caaataattt tgccggggag
     9601 gcatcacatg attacaggta tccagattac taaagccgct aacgacgatc tgctgaactc
     9661 tttctggctg ctggacagcg aaaaaggcga agcacgttgc atcgttgcaa aagcaggtta
     9721 tgcagaagat gaagtggttg cagtaagcaa actgggtgac attgaatacc gtgaagttcc
     9781 agtagaagtg aaaccagaag ttcgcgttga aggtggtcaa cacctgaacg ttaacgttct
     9841 gcgtcgtgaa actctggaag atgcagttaa gcatccggaa aaatatccgc agctgaccat
     9901 ccgtgtatcc ggttatgcag ttcgctttaa ctctctgact ccggaacagc agcgcgacgt
     9961 tatcgctcgt acctttactg aaagcctgta aggcttaagt agcaagttac taagcggaag
    10021 agggcgacct cttccgcttt ttttcgttaa tagaaaatgc gtaccgcgca atagaccagc
    10081 aacagggcaa gcacgatatt taactggcga ccatactggc gaaacaatcg ctgaaacaga
    10141 tgccccgcca gcgcccagca cacattgcca aacgtcccaa tcatcgccag caaaacgctg
    10201 acgccaacta cccagcttag cgcctgtgtt tgcggcagaa caaacgtcga cagtgccgta
    10261 acaccgtaca aaatgatttt gacgttcaca aactgcaaag caaagctggc ccaaaagctg
    10321 attggttttg cctgaagtcc gtcttccttt gttgggctgg tggcgatttt ccacgccagc
    10381 cagacaatat atgccgcccc cgcccaactc aaaaggtgta ccgctgccgg gtcaatcact
    10441 gccagtgaaa atgaaatgcc cgcacacagt aacatcacaa tcaaaaatcc cagactcatc
    10501 cctgccagca cgcgggtact ttgacgaaat ccatgcgacg tagcagagct aagggcgaga
    10561 atattgttcg gtcttggcgt catagcggta atcagggtgt aagtccaaaa agcacttaaa
    10621 agggtcggtg tcacttgtta tctcctctgt
//
LOCUS       DAJVUP010000147        10464 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.147, whole genome shotgun sequence.
ACCESSION   DAJVUP010000147 DAJVUP010000000
VERSION     DAJVUP010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10464
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.147"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(28..1926)
                     /gene="espL1"
                     /locus_tag="OQQ75_003370"
                     /pseudo
     CDS             complement(28..1926)
                     /gene="espL1"
                     /locus_tag="OQQ75_003370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310454.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector EspL1"
     gene            2448..4376
                     /gene="thrS"
                     /locus_tag="OQQ75_003371"
     CDS             2448..4376
                     /gene="thrS"
                     /locus_tag="OQQ75_003371"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006894721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HCS1977583.1"
                     /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL
                     VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF
                     YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHAARETFANRGESYKVSIL
                     DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI
                     YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE
                     LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC
                     PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI
                     PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV
                     MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG
                     IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV
                     IEKLQQEIRSRSLKQLEE"
     gene            4380..4922
                     /gene="infC"
                     /locus_tag="OQQ75_003372"
     CDS             4380..4922
                     /gene="infC"
                     /locus_tag="OQQ75_003372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HCS1977584.1"
                     /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALE
                     KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQRVIQVKEIKFRPGT
                     DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES
                     FPTKIEGRQMIMVLAPKKKQ"
     gene            5019..5216
                     /gene="rpmI"
                     /locus_tag="OQQ75_003373"
     CDS             5019..5216
                     /gene="rpmI"
                     /locus_tag="OQQ75_003373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HCS1977585.1"
                     /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL
                     RPKAMVSKGDLGLVIACLPYA"
     gene            5269..5625
                     /gene="rplT"
                     /locus_tag="OQQ75_003374"
     CDS             5269..5625
                     /gene="rplT"
                     /locus_tag="OQQ75_003374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HCS1977586.1"
                     /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFTALVEKAKAALA"
     misc_feature    5742..5866
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            5748..5792
                     /gene="pheM"
                     /locus_tag="OQQ75_003375"
     CDS             5748..5792
                     /gene="pheM"
                     /locus_tag="OQQ75_003375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheST operon leader peptide PheM"
                     /protein_id="HCS1977587.1"
                     /translation="MNAAIFRFFFYFST"
     gene            6075..7058
                     /gene="pheS"
                     /locus_tag="OQQ75_003376"
     CDS             6075..7058
                     /gene="pheS"
                     /locus_tag="OQQ75_003376"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004851795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HCS1977588.1"
                     /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT
                     LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE
                     NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF
                     DTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI
                     SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH
                     PNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK"
     gene            7073..9460
                     /gene="pheT"
                     /locus_tag="OQQ75_003377"
     CDS             7073..9460
                     /gene="pheT"
                     /locus_tag="OQQ75_003377"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HCS1977589.1"
                     /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHG
                     VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD
                     FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEI
                     SVTPNRADCLGIIGVARDVAVLNQLPLVEPEIVPVGATIDDTLPITVEAPEACPRYLG
                     RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI
                     VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE
                     CAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVI
                     DITNEATLPKRATITLRRSKLDCLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS
                     WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ
                     EVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNR
                     VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV
                     LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF
                     ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL
                     FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD"
     gene            9465..9764
                     /gene="ihfA"
                     /locus_tag="OQQ75_003378"
     CDS             9465..9764
                     /gene="ihfA"
                     /locus_tag="OQQ75_003378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HCS1977590.1"
                     /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV
                     KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE"
     gene            complement(10068..10208)
                     /locus_tag="OQQ75_003379"
     CDS             complement(10068..10208)
                     /locus_tag="OQQ75_003379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hok/Gef family protein"
                     /protein_id="HCS1977591.1"
                     /translation="MSQKSLTAITFCVTAILIIWMLHGSLCEIRMSFWGAEFAAFLQC
                     KQ"
BASE COUNT         2751 a         2368 c         2667 g         2678 t
ORIGIN      
        1 taagttggca gcattaccaa tagttggtta taaatacgtc tttagttcat cagcactaaa
       61 actcaggctt tggctgatta catttatagc agcataatat gtttctacag ttttataatg
      121 attatgatga atggctatat gaacagctga catgttgtca tgatttttag cggccaacag
      181 tgtgaataac tgacgttgac taaaagaata tttttttgca aaaatattca gcgtcgatat
      241 ataagataac acgacgtctt cattaccctt gctcatggcg atgtataata caggggttcc
      301 atgtgctgta gcgcctttta ataaatccat gatgttagct ttgctcaact tgtatttaaa
      361 ggcgatgcca ttaattttag agaggaaccg tgtgacacac aaagggtgat tattttccat
      421 tgcagcaaac aaccctagtt caccatcacg tgttttcatt gctaaaatat ccatcactat
      481 ttttttgttt aaaagctctt gtgctattgg agtggttaat gcattcagaa agatatcgat
      541 tgtttcatcg aacccataca acatggagat atagagccca ggtgtttcgt tagcactttt
      601 agtttgcagt aatttaacca gattatcttc atgaatgata tgattgtata tcagtgactg
      661 aatttcttgc ataaatattt ttacgttgtc agtatgtccg ttcatcatag ccagaaataa
      721 agcaggtgta ccaacgctat tctgcgcagt tattatttca atgatttctt tttcagggag
      781 tatgggcaac tgtttgaata atgtaataag ctgttgagtc tggcctgtgg ccattattaa
      841 caacattgcc gatggatgta taggggcaaa tggcattcgt gatgcaatac ccgcgaaaat
      901 agcccctgga actcccacag gtaatagggg cagaatagca attgcacagt tgcgaacata
      961 cctatcagcc caggtctgag catcgggacc tgaactgatg aacttatcaa gcgaaagaaa
     1021 gccccgtgct gtcctgtggg tgcctctgac ggcaacgttg gtatcgttcg ggtcgtagac
     1081 ggacactaca tagtttaatt gtccatacac taactgcttt attcgtagcc ttactgacaa
     1141 agtatgattg tctatatata aaatcgcgga catatgactg acattgtttg ccatcattcg
     1201 acaaaagaaa atatctaaag cgaagccaaa atccttactc gcgataacgc gactccctgc
     1261 aggaggatgg cgaagtaatg ctctgaactc cgcatcccgg actaagggga catgctgctg
     1321 tatggattca acggaggagt aatgtttaat caggttgact ttgccttttc catttctcaa
     1381 tgaatcaagg gcgtattgca atgacagatg gcgacaaaaa atagcgtcag aaggagattg
     1441 caaaaaacat gcactaccat tgagatttac tgttggttgt atagtttttt ctctatggat
     1501 ttttttagac agtttcatac aatggttacg atcttcggca gttaactgtt cctgctcaat
     1561 ataatccagt atgcttcaca aatggttagc cttaataggc gtggtttcca gaaataaggg
     1621 aatgatttct tttttatagt gtaatgtaat aagtatattt tctgcatgga tgggtgaagt
     1681 ggcaaagtta atgataaaaa gggcagtgga gtaacaattt tgtgatattt ttcgacagtt
     1741 tgcggtaaat tcctgagtaa tacagtatga cagcatcgaa cttaagtcag aggtatcaag
     1801 tagggtgatg agttggcgcg caaattgatt aataagctct gatgaaggcg ttggtatgtc
     1861 gctatcgatg tgcaatctat gaggagactt ataatgagtt ctgataatga tatcgttttg
     1921 actcataatc tattcacctt atatatactg gaggttttga ggatgatgat taattattat
     1981 cgccagaacg aaatgtgcac gaaaaattgc tataagaatt gtgtcacttt tatcattgtg
     2041 atatgaccac ttcgtcatta atctcatgat cgtttaaata ctaccgccaa atcacgcaac
     2101 gaactttgct ggattcagtt tatgctgctg taaatccgct cgcagtaaac ctttcagacg
     2161 caccgtgatg ttatcagtgg ttctttaagc gttttgctgg tgtactcact acaaacgaat
     2221 tgcgaatcga atcaatgtga aacggaaagg tacaatctcc ctttttttag tgttaacatc
     2281 gttcaaccgg gtggaaggtg agaggttaat gtctttcatt tgtgtacctg attgcgaacc
     2341 aatttagcat ttgttggcta gatggtttcg caatgaactg ttaataaaca aatttttctt
     2401 tgtatgtgat ctttcgtgtg ggtcaccact gcaaataagg atataaaatg cctgttataa
     2461 ctcttcctga tggcagccaa cgccattacg accacgctgt aagccccatg gatgttgcgc
     2521 tggacattgg tccaggtctg gcgaaagcct gtatcgcagg gcgcgttaat ggcgaactgg
     2581 ttgatgcttg cgatctgatt gaaaacgacg cacaactgtc gatcattacc gccaaagacg
     2641 aagaaggtct ggagatcatt cgtcactcct gtgcgcacct gttagggcat gcgattaaac
     2701 aactttggcc gcataccaaa atggcaatcg gcccggttat tgacaacggt ttttattacg
     2761 acgttgatct tgaccgcacg ttaacccagg aagatgtcga agcactcgag aagcggatgc
     2821 atgagcttgc tgagaaaaac tacgacgtca ttaagaagaa agtcagctgg cacgcagcgc
     2881 gtgaaacttt cgccaaccgt ggggagagct acaaagtctc cattcttgac gaaaacatcg
     2941 cccatgatga caagccaggt ctgtacttcc atgaagaata tgtcgatatg tgccgcggtc
     3001 cgcacgtacc gaacatgcgt ttctgccatc atttcaaact aatgaaaacg gcaggggctt
     3061 actggcgtgg cgacagcaac aacaaaatgt tgcaacgtat ttacggtacg gcgtgggcag
     3121 acaaaaaagc acttaacgct tacctgcagc gcctggaaga agccgcgaaa cgcgaccacc
     3181 gtaaaatcgg taaacagctc gacctgtacc atatgcagga agaagcgccg ggtatggtat
     3241 tctggcacaa cgacggctgg accatcttcc gtgaactgga agtgtttgtt cgttctaaac
     3301 tgaaagagta ccagtatcag gaagttaaag gtccgttcat gatggaccgt gtcctgtggg
     3361 aaaaaaccgg tcactgggac aactacaaag atgcaatgtt caccacatct tctgagaacc
     3421 gtgaatactg cattaagccg atgaactgcc cgggtcacgt acaaattttc aaccaggggc
     3481 tgaagtctta tcgcgatctg ccgctgcgta tggccgagtt tggtagctgc caccgtaacg
     3541 agccgtcagg ttcgctgcat ggcctgatgc gcgtgcgtgg atttacccaa gatgacgcgc
     3601 atatcttctg tactgaagaa caaattcgcg atgaagttaa cggatgtatc cgtttagtct
     3661 atgatatgta cagcactttt ggcttcgaga agatcgtcgt caaactctcc actcgtcctg
     3721 aaaaacgtat tggcagcgac gaaatgtggg atcgtgctga ggcggacctg gcggttgcgc
     3781 tggaagaaaa caacatcccg tttgaatatc aactgggtga aggcgctttc tacggtccga
     3841 aaattgaatt taccctgtat gactgcctcg atcgtgcatg gcagtgcggt acagtacagc
     3901 tggacttctc cttgccgtct cgtctgagcg cctcctatgt gggcgaagac aacgagcgta
     3961 aggtaccggt aatgattcac cgcgcaattc tggggtcgat ggaacgtttc atcggtatcc
     4021 tgaccgaaga attcgctggt ttcttcccga cctggcttgc gccagttcag gttgttatca
     4081 tgaatattac cgattcacag tctgaatacg ttaacgaatt gacgcaaaaa ctatcaaatg
     4141 cgggcattcg tgttaaagca gacttgagaa atgagaagat tggctttaaa atccgcgagc
     4201 acactttgcg tcgcgtccca tatatgctgg tctgtggtga taaagaggtg gaatcaggca
     4261 aagttgccgt tcgcacccgc cgtggtaaag acctgggaag catggacgta aatgaagtga
     4321 tcgagaagtt gcaacaagag attcgcagcc gcagtcttaa acaattggag gaataaggta
     4381 ttaaaggcgg aaaacgagtt caaacggcgc gccctaaccg tatcaatggc gaaattcgcg
     4441 cccaggaagt tcgcttaaca ggtctggaag gcgagcagct tggtattgtg agtctgagag
     4501 aagctctgga gaaagcagaa gaagccggag tagacttagt cgagatcagc cctaacgccg
     4561 agccgccggt ttgtcgtata atggattacg gcaaattcct ctatgaaaag agcaagtctt
     4621 ctaaggaaca gaagaaaaag caaagagtta tccaggttaa ggaaattaaa ttccgtcctg
     4681 gtacagatga aggcgactat caggtaaaac tccgcagcct gattcgcttt ctcgaagagg
     4741 gtgataaagc caaaatcacg ctgcgtttcc gcggtcgtga gatggcgcac cagcaaatcg
     4801 gtatggaagt gcttaatcgc gtgaaagacg atttgcaaga actggcagtg gtcgaatcct
     4861 tcccaacgaa gatcgaaggc cgccagatga tcatggtgct cgctcctaag aagaaacagt
     4921 aaggccttca agtagcactg tctgtggagc cttcgggctt cacaggcttt gttcgccttt
     4981 gtttcgttta ttaacaatgc gaagtggaag ttattaaaat gccaaaaatt aagaccgtac
     5041 gcggtgctgc taagcgcttc aaaaaaaccg gtaaaggtgg ttttaagcac aagcacgcta
     5101 acctgcgtca cattctgacc aaaaaagcga ccaaacgtaa acgtcacctg cgtccgaaag
     5161 ccatggtttc caaaggcgat ctgggcctgg taatcgcgtg cctgccgtac gcataagccg
     5221 ttaacgtttt taacttttta attagaatat agatacagga gagcacatat ggctcgcgta
     5281 aaacgtggtg ttattgcacg cgcacgtcac aagaaaattt tgaaacaagc taaaggctac
     5341 tacggtgcgc gttctcgcgt ataccgcgtt gccttccagg ctgttatcaa agctggtcag
     5401 tatgcttacc gtgaccgtcg tcaacgtaag cgtcagttcc gtcaactgtg gattgcacgt
     5461 atcaacgcag cagcacgtca gaacggtatt tcttacagca aattcatcaa tggcctgaaa
     5521 aaagcctctg ttgaaatcga ccgtaagatc ctggctgata tcgcagtatt cgacaaagta
     5581 gcgttcaccg ctctggttga aaaagcgaaa gcagctctgg cataagccag ttgaaagagg
     5641 gagctagtct ccctcttttc gtttcaacgc catcaaaaca ttgactttta tcgccgtagc
     5701 cttttcaata aaggtctttt gaagagtacc aaaaggtaac gcaagcaatg aatgctgcta
     5761 ttttccgctt ctttttttac tttagcacct gaatccagga ggctagcgcg tgagaagaga
     5821 aacggaaaac agcgcctgaa agcctcccag tggaggcttt ttttgtatgc gcgttttgaa
     5881 aaataaaaag ccagtctatc aggcgtaatt gtcgcagcca gtctggatac ggccagcgcg
     5941 gagaaaccgg agcgtattta agtacgtgag aatttcgagc actgcccggg accaaaatgg
     6001 caagtaaaat agcctgatgg gataggctct aagtccaacg aaccagtgtc accactgaca
     6061 caatgaggaa aaccatgtca catctcgcag aactggttgc cagtgcgaag gcggccatta
     6121 gccaggcgtc agatgttgcc gcgttagata atgtgcgcgt cgaatatttg ggtaaaaaag
     6181 ggcacttaac ccttcagatg acgaccctgc gtgagctgcc gccagaagag cgtccggcag
     6241 ctggtgcggt tatcaacgaa gcgaaagagc aggttcagca ggcgctgaat gcgcgtaaag
     6301 cggaactgga aagcgcagcg ctgaatgcgc gtctggcggc ggaaacgatt gatgtctccc
     6361 tgccaggtcg tcgcattgaa aacggcggtc tgcatccggt tacccgtacc atcgaccgta
     6421 tcgaaagttt cttcggtgag cttggcttta ccgtggcaac cgggccggaa atcgaagacg
     6481 attatcataa cttcgatgct ctgaacattc ctggtcacca cccggcgcgc gctgaccacg
     6541 acactttctg gtttgacact acccgcctgc tgcgtaccca gacctctggc gtacagatcc
     6601 gcaccatgaa agcccagcag ccaccgattc gtatcatcgc gcctggccgc gtttatcgta
     6661 acgactacga ccagactcac acgccgatgt tccatcagat ggaaggtctg attgttgata
     6721 ccaacatcag ctttaccaac ctgaaaggca ctctgcacga tttcctgcgt aacttctttg
     6781 aggaagattt gcagattcgc ttccgtcctt cctacttccc gttcaccgag ccttctgcag
     6841 aagttgacgt catgggtaaa aacggtaaat ggctggaagt gctgggttgc gggatggtgc
     6901 atccgaacgt gctgcgtaac gttggcatcg acccggaagt ttactctggt ttcgccttcg
     6961 ggatggggat ggagcgtctg actatgttgc gttacggcgt caccgacctg cgttcattct
     7021 tcgaaaacga tctgcgtttc ctcaaacagt ttaaataagg caggaataga ttatgaaatt
     7081 cagtgaactg tggttacgcg aatgggtgaa cccggcgatt gatagcgatg cgctggcgaa
     7141 tcaaatcact atggcgggcc tggaagttga cggtgtagaa ccggttgccg gtagcttcca
     7201 cggcgtggtc gttggtgaag tggttgagtg tgcgcagcat ccgaacgctg acaaactgcg
     7261 tgtgacaaaa gtgaatgtcg gcggcgatcg cctgctggac atcgtctgtg gtgcgccaaa
     7321 ctgccgtcag ggcctgcgtg tggcggtagc taccattggt gctgttctgc cgggtgattt
     7381 caaaattaaa gcggcgaaac tgcgtggcga accgtctgaa gggatgctgt gctccttctc
     7441 tgaactggga atttctgacg atcacagcgg cattatcgaa ctgcctgcag atgcgccgat
     7501 tggcactgac atccgcgaat acctgaaact cgatgacaac accatcgaaa tcagcgtaac
     7561 gccaaaccgt gccgactgct taggtatcat tggtgttgcg cgtgacgttg ccgtgctgaa
     7621 tcagctgccg ctggttgaac cggaaatcgt tccggttggt gcgaccatcg acgacacgtt
     7681 gccgattaca gtcgaagcgc ctgaagcctg cccgcgctat cttggccgtg tggtaaaagg
     7741 cattaacgtt aaagcgccaa ctccgctgtg gatgaaagaa aaactgcgtc gttgcgggat
     7801 ccgttctatc gatgcagttg ttgacgtcac caactatgta ctgctcgaac tgggccagcc
     7861 gatgcacgct ttcgataaag atcgcattga aggcggcatt gtggtgcgga tggcaaaaga
     7921 gggcgaaacg ctggtgctgc ttgatggcac tgaagcgaag ctgaatgctg acactctggt
     7981 catcgccgac cacaacaagg cgctggcgat gggcggcatc tttggtggcg aacactctgg
     8041 cgtgaatgac gaaacgcaaa acgtcttgct ggaatgcgct ttcttcagcc cgctgtctat
     8101 caccggtcgt gctcgtcgtc atggcctgca tactgatgcg tctcaccgtt atgagcgtgg
     8161 cgttgatccg gcactgcagc acaaagcgat ggaacgtgcg acccgtctgc tgatcgacat
     8221 ctgcggtggt gaggctggtc cggtaattga tatcaccaac gaagcaacgc tgccgaagcg
     8281 tgcaaccatc actttacgtc gtagcaaact ggattgcctg atcggccatc atattgctga
     8341 tgaacaggta actgacattc tgcgtcgtct cggctgcgaa gtgaccgaag gcaaagacga
     8401 gtggcaggca gttgcgccga gctggcgttt cgatatggag attgaagaag atctggtcga
     8461 agaagtcgcg cgtgtttacg gctacaacaa catcccggat gagccggtac aggcaagcct
     8521 gattatgggt actcaccgtg aagctgacct gtcgctcaag cgcgtgaaaa cgctgctcaa
     8581 cgacaaaggc tatcaggaag tgatcaccta cagcttcgtt gatccgaaag tgcagcagat
     8641 gatccatcca ggcgttgaag ccttactgct gccaagcccg atctctgttg aaatgtcagc
     8701 aatgcgtctt tctctgtgga ccggcctgct ggcaaccgtg gtgtacaacc agaaccgtca
     8761 gcagaaccgt gtgcgcattt tcgaaagcgg tctgcgtttc gtaccagata ctcaggcacc
     8821 gttgggcatt cgtcaggatc tgatgttagc cggtgtgatt tgcggtaacc gttacgaaga
     8881 gcactggaac ctggcaaaag agaccgttga tttctatgat ttgaaaggcg atcttgaatc
     8941 cgttctcgac ctgaccggta aactgaatga ggttgagttc cgtgcagaag cgaatccggc
     9001 actgcatccg gggcaatccg cagcgattta tctgaaaggg gaacgtattg gttttgttgg
     9061 agttgttcat cctgaactgg aacgtaaact ggatcttaac ggtcgcactc tggtgttcga
     9121 actggagtgg aacaagctcg cagaccgcgt ggtgcctcag gcgcgcgaga tttctcgctt
     9181 cccggcgaac cgtcgtgaca tcgcggtggt ggtcgcagaa aacgttcccg cagcggatat
     9241 tttatccgaa tgtaagaaag ttggcgtaaa tcaggtagtt ggcgtaaact tatttgacgt
     9301 gtaccgcggt aagggtgttg cggaggggta taagagcctc gccataagcc tgatcctgca
     9361 agataccagc cgtacactcg aagaagagga gattgccgct accgtcgcca aatgtgtaga
     9421 ggcattaaaa gagcgattcc aggcatcatt gagggattga acctatggcg cttacaaaag
     9481 ctgaaatgtc agaatatctg tttgataagc ttgggcttag caagcgggat gccaaagaac
     9541 tggttgaact gtttttcgaa gagatccgtc gcgctctgga aaacggcgaa caggtgaaac
     9601 tctctggttt tggtaacttc gatctgcgtg ataagaatca acgcccggga cgtaacccga
     9661 aaacgggcga ggatattccc attacagcac ggcgcgtggt gaccttcaga cccgggcaga
     9721 agttaaaaag ccgggtcgaa aacgcttcgc ccaaagacga gtaatctgat ctaactaaaa
     9781 aggccgctct gcggcctttt ttctttcaat aactaattga tttataatgt tttatatctc
     9841 ttcgttccac gatgcgtcca catttagtgg ggggagggga gtaagcccgc tacattgtgg
     9901 gctttgtctt atagtctgat cactgtttca agtcggtgag gacaccaaaa agaacccccg
     9961 cagtttttac gctgcgggtt tgttgttcat gtctgtgaga tagggtgcct tatcgacctt
    10021 accctggcaa ccgattgacg ggggattgct cccccgtcgc ggtttcctta ctgcttacac
    10081 tgtaagaacg ccgcaaactc cgctccccag aagctcatcc gtatttcgca cagcgaaccg
    10141 tgcagcatcc agatgatgag gattgccgtc acgcagaacg tgatggccgt aagcgatttt
    10201 tgcgacatag cgcttgctcc tttttcgggg aggcgctaac ctatcacttg cttagggtag
    10261 acggttaggg cctcggttaa acaaaaatgt tttccggggc ctttccacat ctggccttca
    10321 ggtattccct ccgaccatca gccgaaaggc acccgcgcgt aatctatcgc ttttttgtta
    10381 ctccggcaat tctgctcgtt aattctgagg taagggcaaa ctcatctgat tgtttcctct
    10441 gtgtgaagtt ggcagttcat gcca
//
LOCUS       DAJVUP010000148        10424 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.148, whole genome shotgun sequence.
ACCESSION   DAJVUP010000148 DAJVUP010000000
VERSION     DAJVUP010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10424
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.148"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            141..2009
                     /gene="kup"
                     /locus_tag="OQQ75_003380"
     CDS             141..2009
                     /gene="kup"
                     /locus_tag="OQQ75_003380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity potassium transporter Kup"
                     /protein_id="HCS1977592.1"
                     /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV
                     ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML
                     VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
                     GTAMVGKLFAPIMLTWFLILAGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIAL
                     GAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNP
                     FFLLAPDWALIPLLIIAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES
                     GQIYIPFVNWMLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARQNWHW
                     NKYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIVMTTWKSERFRLLRR
                     MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALMHNLKHNKVLHERVILL
                     TLRTEDAPYVHNVRRVQIEQLSLTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMME
                     TSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI"
     gene            2176..2595
                     /gene="rbsD"
                     /locus_tag="OQQ75_003381"
     CDS             2176..2595
                     /gene="rbsD"
                     /locus_tag="OQQ75_003381"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HCS1977593.1"
                     /translation="MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMAL
                     TQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIR
                     YTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF"
     gene            2603..4072
                     /gene="rbsA"
                     /locus_tag="OQQ75_003382"
                     /pseudo
     CDS             2603..4072
                     /gene="rbsA"
                     /locus_tag="OQQ75_003382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418205.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
     gene            4077..5042
                     /gene="rbsC"
                     /locus_tag="OQQ75_003383"
     CDS             4077..5042
                     /gene="rbsC"
                     /locus_tag="OQQ75_003383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HCS1977594.1"
                     /translation="MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTIN
                     NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVA
                     AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL
                     FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNK
                     IKIIVYSLCGLLASLAGTIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV
                     GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ"
     gene            5067..5953
                     /gene="rbsB"
                     /locus_tag="OQQ75_003384"
                     /pseudo
     CDS             5067..5953
                     /gene="rbsB"
                     /locus_tag="OQQ75_003384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312720.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
     gene            6079..7008
                     /gene="rbsK"
                     /locus_tag="OQQ75_003385"
     CDS             6079..7008
                     /gene="rbsK"
                     /locus_tag="OQQ75_003385"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HCS1977595.1"
                     /translation="MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKG
                     ANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV
                     NGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK
                     TIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIR
                     TVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIR
                     FAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR"
     gene            7012..8004
                     /gene="rbsR"
                     /locus_tag="OQQ75_003386"
     CDS             7012..8004
                     /gene="rbsR"
                     /locus_tag="OQQ75_003386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon transcriptional repressor RbsR"
                     /protein_id="HCS1977596.1"
                     /translation="MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELN
                     YAPSALARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ
                     RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
                     SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG
                     DFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDI
                     ELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILMERGSA"
     gene            complement(7970..9397)
                     /gene="mdtD"
                     /locus_tag="OQQ75_003387"
     CDS             complement(7970..9397)
                     /gene="mdtD"
                     /locus_tag="OQQ75_003387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtD"
                     /protein_id="HCS1977597.1"
                     /translation="MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRS
                     PLAMQSAIISYTLTVAMFIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQL
                     VVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVT
                     WATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELF
                     GEKIVASWIALTVIVTSIGLLLLYILHARHTPNPLISLDLFKTRTFSIGIVGNIATRL
                     GTGSVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGI
                     TVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGN
                     SVLAVTQQLSISLGVAVSAAVLRVYEGMEGTTTVEQFHYTFITMGIITVASAAMFMLL
                     KTTDGNNLIKRQRKSKPNRVPSESE"
     gene            complement(9420..10112)
                     /locus_tag="OQQ75_003388"
     CDS             complement(9420..10112)
                     /locus_tag="OQQ75_003388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HCS1977598.1"
                     /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELG
                     EQFGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQ
                     VIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKKNFRRERWIEVDMAW
                     HEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAF
                     KTCQALLRSPDK"
BASE COUNT         2550 a         2515 c         2751 g         2608 t
ORIGIN      
        1 aaggggggta tttttctttg agccaggtta atgtggccgc atttaggagt acgattttgc
       61 cgttaatcgt gcatactgtg cgcttttttg tgggccaagg gactaagcac acatttcata
      121 tttcaacgaa agactagtct atgagcactg ataataagca atcattgccc gcgattaccc
      181 tcgcggcgat tggagttgtc tacggcgata ttggtaccag cccgttatat acacttcgtg
      241 aatgtttgtc cggccagttt ggttttggcg ttgaacgcga tgccgtgttt ggctttttat
      301 cgctgatctt ctggctgcta atctttgtgg tttccattaa atatctcacc ttcgtgatgc
      361 gggcagataa cgccggtgag ggggggatcc tgacgttgat gtcgcttgcc gggcgtaata
      421 cgtcggcgcg aaccacatca atgctggtga ttatggggct aatcggcggc agctttttct
      481 atggtgaagt cgtcataaca cccgctattt cggtgatgtc agccattgaa ggtctggaaa
      541 tcgtcgcccc gcagctggat acctggatag ttcccctctc aattatcgtt ctcactttat
      601 tatttatgat tcaaaaacat ggcacggcta tggtcggtaa gctgtttgcg ccgatcatgc
      661 tgacctggtt tttgattctg gcaggactgg ggttacgtag cattattgct aacccggaag
      721 tgctgcatgc gctgaatcca atgtgggcgg tgcatttctt ccttgaatac aaaacggttt
      781 cttttattgc attaggggca gtggtgttgt cgattacggg ggtcgaggcg ctgtatgctg
      841 atatggggca ctttggtaag ttccctattc gcctggcgtg gttcaccgtc gtattacctt
      901 ccttgaccct taattacttc ggtcagggag cgctgttgtt aaagaacccg gaagcgatta
      961 agaacccgtt cttcctgttg gcaccggact gggcgctgat cccgctgctg atcatcgccg
     1021 cactggcgac ggtaattgcc tcgcaggcgg ttatctctgg cgtcttctca ttgacgcgtc
     1081 aggcggtacg tctgggatat ttgtcgccga tgcgcattat tcacacctcc gaaatggagt
     1141 cagggcaaat ctatattccg tttgtgaact ggatgctcta tgtcgcggtc gtgattgtga
     1201 ttgtcagctt tgagcactcc agcaacctgg cggcggcgta cgggattgcg gtgaccggaa
     1261 ccatggtgct gacgtctatt ctctcgacta ccgtggcacg tcagaactgg cactggaata
     1321 agtattttgt tgcgctgatc ctgattgctt tcctttgtgt cgatattcca ttgttcaccg
     1381 ctaacctcga taaactgctc tccggcggtt ggttgccatt gagcctcggt acggtgatgt
     1441 ttatcgtgat gaccacctgg aagagcgagc gtttccgctt gctgcggcgg atgcatgaac
     1501 atggtaactc tctggaagcg atgattgctt cgctggagaa atcaccgcct gttcgcgtgc
     1561 ccgggaccgc ggtgtatatg tcgcgtgcaa tcaacgtcat tccctttgcg ctgatgcata
     1621 accttaaaca taacaaggta ttgcatgagc gggtgattct gttaactctg cgtaccgaag
     1681 acgcgccata tgtccataat gtccgtcggg tacagattga acaactgtcg ctcactttct
     1741 ggcgcgtggt ggcaagttat ggttggcgag aaacgccaaa cgtggaagaa gttttccacc
     1801 gctgcggtct ggaaggatta agttgccgga tgatggaaac ctccttcttt atgtcgcatg
     1861 agtcgttgat cctcggcaaa cgcccgtggt atttgcgtct gcgcggcaag ctgtacttgc
     1921 tgctgcaacg taatgcgctg cgtgcaccag atcaatttga aatcccgcca aacagggtta
     1981 tcgaactggg tactcaggtc gaaatctaac gccagacgcc tcctttctcc ataagggggc
     2041 gtttttgttt tcatggttaa tcaccatgta aaacgtttcg aggttgatca catttccgta
     2101 acgtcacgat ggttttccca actcagtcag gattaaactg cgggtcagcg aaacgtttcg
     2161 ctgatggaga aaaaaatgaa aaaaggcacc gttcttaatt ctgatatttc atcggtgatc
     2221 tcccgtctgg gacataccga tacgctggtg gtgtgtgatg ctggtttacc catccccaaa
     2281 agtacaacgc gtatcgatat ggcattaacc cagggtgtac cttcttttat gcaggtgctg
     2341 ggcgtcgtta caaatgaaat gcaggtcgag gctgccatta tcgcggaaga gatcaaacaa
     2401 cataatccgc aactccacga aacgttgctc actcaccttg agcagctgca aaaacaccag
     2461 ggaaatacca ttgaaattcg ttacaccacg catgaacaat tcaaacaaca aaccgcagaa
     2521 agtcaggcgg taattcgcag cggagaatgt tctccgtatg cgaatatcat tctctgtgct
     2581 ggcgtgacgt tctgaggccg tcatggaagc attacttcag cttaaaggca tcgataaagc
     2641 cttcccgggc gtaaaagccc tctcgggcgc tgcgttaaat gtctatccgg gccgcgtgat
     2701 ggcgctggtg ggcgaaaacg gcgcgggtaa atccaccatg atgaaagtgc ttactggtat
     2761 ctatgctcgc gatgccggca cgcttttatg gctggggaaa gaaacgacat ttaccgggcc
     2821 gaaatcttcc caggaagccg ggattgggat tatccatcag gaactgaacc tgatcccgca
     2881 gttgaccatt gccgaaaaca ttttcctcgg tcgtgagttt gttaatcgct ttggcaaaat
     2941 tgactggaaa accatgtatg ccgaagcgga taaattgctg gctaaactta acctgcgctt
     3001 taaaagcgac aagctggtgg gcgatctttc catcggtgac cagcaaatgg ttgaaatcgc
     3061 caaagtgctg agctttgagt cgaaagtcat cattatggat gaaccgaccg atgcgctgac
     3121 cgataccgaa accgaatccc tgttccgcgt catccgcgaa ctaaaatcgc aaggccgcgg
     3181 tattgtctat atctcccacc gcatgaaaga aatcttcgag atttgcgatg ccgttaccgt
     3241 ttttcgtgac gggcaattta ttgctgagcg cgaagtggca tcactgaccg aagattcgct
     3301 gattgagatg atggtgggtc gcaagctgga agatcaatat ccacacctgg acaaagcgcc
     3361 gggagatatc cgcctgaaag tcgataatct ctgcggacct ggcgttaacg atgtctcttt
     3421 tactttacgc aaaggcgaaa ttcttggcgt ctctggtttg atgggcgcag gtcgtaccga
     3481 actgatgaaa gtgctctacg gcgcactacc gcgcaccagc ggttacgtca ccctggatgg
     3541 gcatgaagtc gttacccgtt caccgcagga tggcctggca aacggcattg tgtatatctc
     3601 cgaagaccgt aaacgtgacg gtttagtgtt gggcatgtca gtaaaagaga acatgtcgct
     3661 gacagcgctg cgctacttca gccgcgctgg cggcagtttg aagcatgccg atgaacagta
     3721 ggctgtgagt gatttcattc gtctgtttaa tgtgaaaaca ccgtcgatgg aacaggcaat
     3781 tggtctgctt tccggtggca atcagcaaaa agtgttgatc cttgatgaac ctacccgtgg
     3841 cgtagatgtc ggcgcgaaaa aagagatcta tcaactgatt aaccagttca aagccgatgg
     3901 cttgagcatc attctggtgt catcggagat gccagaagta ttaggcatga gcgatcgcat
     3961 catcgtcatg catgaagggc atctcagcgg ggaatttact cgtgagcagg ccacccagga
     4021 agtgttaatg gctgccgctg tgggcaagct taatcgcgtg aatcaggagt aaaaaaatga
     4081 caacccagac tgtctctggt cgccgttatt tcacgaaagc gtggctgatg gagcagaaat
     4141 cgcttatcgc tctgctggtg ctgatcgcga ttgtctcgac gttaagcccg aactttttca
     4201 ccatcaataa cttattcaat attctccagc aaacctcggt gaacgccatt atggcggtcg
     4261 ggatgacgct ggtgatcctg acttcgggca tcgacttgtc tgtaggttct ctgttggcgc
     4321 taaccggcgc agttgctgca tctatcgtcg gcattgaagt caatgcgctg gtggctgtcg
     4381 ctgctgctct cgcgttaggt gccgcaattg gtgcggtaac cggggtgatt gtagcgaaag
     4441 gtcgcgttca ggcgtttatc gctacgctgg ttatgatgct tttactgcgc ggcgtgacca
     4501 tggtttatac caacggtagc ccagtgaata ccggctttac tgagaacgcc gatctgtttg
     4561 gctggtttgg tattggtcgt ccgctgggcg taccgacgcc agtctggatc atggggattg
     4621 tcttcctcgc ggcctggtac atgctgcatc acacgcgtct ggggcgttac atctacgcgc
     4681 tgggcggcaa cgaagcggca acgcgtcttt ctggtatcaa cgtcaataaa atcaaaatca
     4741 tcgtctattc tctttgtggt ctgctggcat cgctggccgg gaccattgaa gtggcgcgtc
     4801 tctcctccgc acaacccacg gcggggactg gctatgagct ggatgctatt gctgcggtgg
     4861 ttctgggcgg tacgagtctg gcgggcggaa aaggtcgcat tgttgggacg ttgatcggcg
     4921 cattaattct tggcttcctt aataatggat tgaatttgtt aggtgtttcc tcctattacc
     4981 agatgatcgt caaagcggtg gtgattttgc tggcggtgct ggtagacaac aaaaagcagt
     5041 aataacgact acaggacatc ttgaatatga acatgaaaaa actggctacc ctggtttccg
     5101 ctgttgcgct aagcgccacc gtcagtgcga atgcgatggc aaaagacacc atcgcgctgg
     5161 tggtctccac gcttaacaac ccgttctttg tatcgctgaa agatggcgcg cagaaagagg
     5221 cggataagct tggctataac ctggtggtgc tggactccca gaacaacccg gcgaaagagc
     5281 tggcgaacgt gcaggactta accgttcgcg gcaccaaaat tctgctgatt aacccgaccg
     5341 actccgacgc agtaggtaat gctgtgaaga tggctaacca ggcgaacatc ccggttatca
     5401 ctcttgaccg ccaggcaacg aaaggtgaag tggtgagcca cattgcttct gataacgtac
     5461 tgggtggcaa aatcgccggt gattacatcg cgaagaaagc gggtgaaggt gccaaagtta
     5521 tcgagctgca aggcattgct ggtacatccg cagcccgtga acgtggcgaa ggcttccagc
     5581 aggccgttgc tgctcacaag tttaatgttc ttgccagcca gcagattttg atcgcactaa
     5641 aggtttgaac gtaatgcaga acctgttgac cgctcatccg gatgttcagg ctgtattcgc
     5701 gcagaatgat gaaatggcgc tgggcgcgct gcgcgcactg caaactgccg gtaaatcgga
     5761 tgtgatggtc gtcggatttg acggtacacc ggatggcgaa aaagcggtga atgatggcaa
     5821 actagcagcg actatcgctc agctacccga tcagattggc gcgaaaggcg tcgaaaccgc
     5881 agataaagtg ctgaaaggcg agaaagttca ggctaagtat ccggttgatc tgaaactggt
     5941 tgttaagcag tagttttaat caggttgtat gacctgatgg tgacataaat acgtcatcga
     6001 cagatgaacg tgtaatataa agaaaagcag ggcacgcgcc accctaacac ggtggcgcat
     6061 tttatggaca tcccgaatat gcaaaacgca ggcagcctcg ttgttcttgg cagcattaat
     6121 gctgaccaca ttcttaatct tcaatctttt cctactccag gcgaaaccgt aaccggtaac
     6181 cactatcagg ttgcatttgg cggcaaaggc gcgaatcagg ctgtggctgc tgggcgtagc
     6241 ggtgcgaata tcgcgtttat tgcctgtacg ggtgatgaca gcattggtga gagcgttcgc
     6301 cagcagctcg ccactgataa cattgatatt actccggtca gcgtgatcaa aggcgaatca
     6361 acaggtgtgg cgctgatttt tgttaatggc gaaggtgaga atgtcatcgg tattcatgcc
     6421 ggcgctaatg ctgccctttc cccggcgctg gtggaagcgc aacgtgagcg tattgccaac
     6481 gcgtcagcat tattaatgca gctggaatca ccactcgaaa gtgtgatggc agcggcgaaa
     6541 atcgcccatc aaaataagac tatcgttgcg cttaacccgg ctccggctcg cgaacttcct
     6601 gacgaactgc tggcgctggt ggacattatt acgccaaacg aaacggaagc agaaaagctc
     6661 accggtattc gtgttgaaaa tgatgaagat gcagcgaagg cggcgcaggt actgcatgaa
     6721 aaaggtatcc gtactgtact gattacttta ggaagtcgtg gtgtatgggc tagcgtgaat
     6781 ggtgaaggtc agcgcgttcc tggattccgg gtgcaggctg tcgataccat tgctgccgga
     6841 gataccttta acggcgcgtt aatcacggcg ttgctggaag aaaaaccatt gccagaggcg
     6901 attcggtttg cccatgctgc agctgcgatt gccgtaacac gtaaaggcgc acaaccttcc
     6961 gtaccgtggc gtgaagagat cgacgcattt ttagacaggc agaggtgacg cttggctaca
     7021 atgaaagatg ttgcccgcct ggcgggcgtt tctacctcaa cagtttctca cgttatcaat
     7081 aaagatcgct tcgtcagtga agcgattacc gccaaagttg aagcggcgat taaagaactc
     7141 aattacgcgc catcagccct ggcgcgtagc ctcaaactca atcaaacaca taccattggc
     7201 atgttgatca ctgccagtac caatcctttc tattcagaac tggtgcgtgg cgttgaacgc
     7261 agctgcttcg aacgcggtta tagtctcgtc ctttgcaata ccgaaggcga tgaacagcgg
     7321 atgaatcgca atctggaaac gctgatgcaa aaacgcgttg atggcttgct gttactgtgc
     7381 accgaaacgc atcaaccttc gcgtgaaatc atgcaacgtt atccgacagt gcctactgtg
     7441 atgatggact gggctccgtt cgatggcgac agcgatctta ttcaggataa ctcgttgctg
     7501 ggcggagact tagcaacgca atatctgatc gataaaggtc atacccgtat cgcctgtatt
     7561 accggtccgc tggataaaac tccggcgcgc ctgcggttgg aaggttatcg ggcggcgatg
     7621 aaacgtgcgg gtctcaacat tcctgatggc tatgaagtca ctggtgattt tgaatttaac
     7681 ggcgggtttg acgccatgcg ccaactgtta tcacatccgc tgcgtcctca ggccgtcttt
     7741 accggaaatg acgctatggc tgttggcgtt taccaggcgt tatatcaggc agagttacag
     7801 gttccgcagg atatcgcggt gattggctat gacgatatcg aactggcaag ctttatgacg
     7861 ccaccattaa ccactatcca ccaaccgaaa gatgaactgg gggagctggc gattgatgta
     7921 ctcatccatc ggataaccca gccgaccctt cagcaacaac gattacaact tactccgatt
     7981 ctgatggaac gcggttcggc ttagatttac gctgtctttt gatcaaatta ttaccatcgg
     8041 ttgttttcag aagcatgaac attgctgctg aagcaacagt aataatgccc atcgtgataa
     8101 acgtatagtg gaattgttcg acagtcgttg tgccttccat cccttcataa acgcgaagga
     8161 cggccgcact tacagcaacg cctaaactaa tcgacagttg ctgcgtgacc gccagaacac
     8221 tgttaccgct gctggcgttg tcatcggtca gatcggcaag tgtgatggta ttcatcgcgg
     8281 taaattgcgt cgacatagcc atccctaata taaacaacgg caagatcagc atccatatcg
     8341 ccattgccgg tgattgcaaa gagaactgag cgatcattag cccaataatc accgtgatcc
     8401 ccactaacgt atggcgatag cccagacgac gtaagacttg ggtaaccatc gattttgcaa
     8461 taatggaacc taacgctgtc ggtgccatca tacagccggc aataaacgcc tgataaccaa
     8521 atcctacctg taacatcaat ggcataagga acggtacact accggtcccc agacgggttg
     8581 caatattgcc tacgataccg atcgagaaag tgcgggtttt aaataaatct aatgaaatta
     8641 atgggtttgg cgtgtgtcgc gcatggagaa tatagagaag cagtaacccg atgctggtga
     8701 caattaccgt caaggcaatc cagctggcga caatcttttc cccgaatagc tctattccgc
     8761 ttgagaagag aacaaggctg aggccaaaca gcaaaaagcc agtgatatcg aatctgcgtc
     8821 gtgcggtggt gaaattgggc atatgtttgc gcgcgtaaag aaggcccgca atacctatgg
     8881 ggatattgat taaaaatatc cagtgccagg ttgcccaggt gaccagcacg ccgccaagaa
     8941 cggggcctaa aattggcccc accagacccg gcatggcgac aaaattcaat acaggaagaa
     9001 gttcattacg aggataagca cgcagtaagg ccagccgagc aacaggcatc atcattgcgc
     9061 cgcctatccc ctgaataacc cggaagacaa ccagctgtgg tagcgaatta gaaagtgcgc
     9121 aggccagaga acccaacgtg aacagactca cggcaagggt aaaaatgcga cgcgtaccga
     9181 agcgatcggc tagccatccg cttaccggaa taaacatcgc caccgtcagc gtataactga
     9241 tgatggctga ttgcatcgcg agaggagaac gattaaggct atgagcgatt gcgggtaagg
     9301 cggtattcag aatagtggca tcaagtgcct gcatgaagaa ggccatcgcc gcgatccacg
     9361 gcaaacccgc catactacgc ttctttttat cgctcattca atgtcctgtt atcgggttat
     9421 cacttatcag gtgagcgtag cagcgcctga caagttttaa atgccgcgtc gccatcgctt
     9481 tggataatcg catcgacaat cgcctggtgc agatccagct ttatcactgt gtcgctggta
     9541 attgacgtga agtaagtgtg ataaaccgaa tggaatagcg aggcgaatga ggtcaaaaac
     9601 ggattggcgc tcatttcata gatatgctca tgccaggcca tatcgacttc gatccagcgt
     9661 tcacggcgaa agttcttttt taatgccgcc atttcggcca ttaacgtatt gagatgcgcc
     9721 ttctgttccg cggtgccaac cgttgctgcc agtaggcagg cttgcggctc cagacagata
     9781 cgcataacca gaaagtgatc gatgacctga tgaaagttct cttctgtcat ccaccaggta
     9841 agcaattcct gatcaagaaa attccagttt gattgtggca tgacccgggt accaattcgc
     9901 ggtcgcggta aaaccatccc ttttgccgtt aacgttttga ccgcttcgcg taccgctgta
     9961 cgactcactc caaattgctc gcccagctca atctcaccag gcaaaatggt gccgggttca
    10021 tattcacctt ttaagatgcg ttgcgccagc ttctcagcca gaacatacga aaggtttttc
    10081 tgtgcagcta actgttgtgc gcttaaaggc attactaatc ttcctttttc tttttattcc
    10141 tccttagtat gccaccagga agtgtgatta cggttgcaaa aacggcaaat tgcttgtttt
    10201 atggcacatt aacggggctt ttgctgaaaa agtgcgcggt cagaaaatta ttttaaattt
    10261 cctcttgtca ggccggaata actccctata atgcgccacc actgacacgg aacaacggca
    10321 aacacgccgc cgggtcagcg gggttctcct gagaattccg acagagaaag caaaaataaa
    10381 tgcttgactc tgtagcggga aaacgtatta tgcacacccc gcgc
//
LOCUS       DAJVUP010000149        10373 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.149, whole genome shotgun sequence.
ACCESSION   DAJVUP010000149 DAJVUP010000000
VERSION     DAJVUP010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10373
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.149"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(40..1035)
                     /gene="gapA"
                     /locus_tag="OQQ75_003389"
     CDS             complement(40..1035)
                     /gene="gapA"
                     /locus_tag="OQQ75_003389"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006322611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS1977599.1"
                     /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM
                     LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT
                     DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK
                     VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE
                     DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK"
     gene            1377..1790
                     /gene="msrB"
                     /locus_tag="OQQ75_003390"
     CDS             1377..1790
                     /gene="msrB"
                     /locus_tag="OQQ75_003390"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HCS1977600.1"
                     /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY
                     HCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL
                     GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING"
     gene            1832..2104
                     /locus_tag="OQQ75_003391"
     CDS             1832..2104
                     /locus_tag="OQQ75_003391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707337.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaC family protein"
                     /protein_id="HCS1977601.1"
                     /translation="MNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL
                     VMLWQARHNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK"
     gene            complement(2265..2906)
                     /gene="pncA"
                     /locus_tag="OQQ75_003392"
     CDS             complement(2265..2906)
                     /gene="pncA"
                     /locus_tag="OQQ75_003392"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HCS1977602.1"
                     /translation="MPHRALLLVDLQNDFCAGGALAVPEGDSTVEVANRLIDWCQSRG
                     EAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLNQ
                     KAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFT
                     VLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG"
     gene            complement(2917..3933)
                     /gene="ansA"
                     /locus_tag="OQQ75_003393"
     CDS             complement(2917..3933)
                     /gene="ansA"
                     /locus_tag="OQQ75_003393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HCS1977603.1"
                     /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP
                     EMPDFTIHEYTPLMDSSDMTPDDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS
                     FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR
                     TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY
                     PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG
                     KVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL
                     TPDD"
     gene            complement(4100..5956)
                     /gene="sppA"
                     /locus_tag="OQQ75_003394"
     CDS             complement(4100..5956)
                     /gene="sppA"
                     /locus_tag="OQQ75_003394"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707347.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HCS1977604.1"
                     /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ
                     VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN
                     TIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY
                     YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD
                     DMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSAQGLLEGLTKTGGDTAKYA
                     LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN
                     GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA
                     RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV
                     HTDGVSTSPLADVSITRALPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ
                     GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG
                     SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANVR"
     gene            6117..6668
                     /locus_tag="OQQ75_003395"
     CDS             6117..6668
                     /locus_tag="OQQ75_003395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H nitroreductase"
                     /protein_id="HCS1977605.1"
                     /translation="MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQP
                     WHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKV
                     PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
                     GTPQLKASTSINVPDPTPFVTYF"
     gene            6785..7828
                     /gene="selD"
                     /locus_tag="OQQ75_003396"
     CDS             6785..7828
                     /gene="selD"
                     /locus_tag="OQQ75_003396"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HCS1977606.1"
                     /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV
                     GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA
                     IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE
                     RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN
                     IEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYDAIPKLPGVEEYIKLGAVPGGTER
                     NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGEL
                     VPARGGRAMVEIR"
     gene            7833..9794
                     /gene="topB"
                     /locus_tag="OQQ75_003397"
     CDS             7833..9794
                     /gene="topB"
                     /locus_tag="OQQ75_003397"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HCS1977607.1"
                     /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH
                     LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG
                     DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
                     SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA
                     KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV
                     TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR
                     YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSA
                     INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL
                     GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ
                     DKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT
                     RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG
                     SADKKKAAPRKRSAKKSPPADEVGSGAIA"
     gene            9921..>10373
                     /locus_tag="OQQ75_003398"
     CDS             9921..>10373
                     /locus_tag="OQQ75_003398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977608.1"
                     /translation="MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGF
                     YLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQ
                     AKGIEPLSIEKLQALQLITPYRFYHKQWSETLEFWPRKPEPGKDTFQYH"
BASE COUNT         2612 a         2536 c         2736 g         2489 t
ORIGIN      
        1 accgaagtcg ctctttttag atcacagttt catctcaact tatttggaga tgtgagcgat
       61 caggtccaga actttgttgg agtaaccggt ttcgttgtcg taccaggata ccagtttcac
      121 gaagttgtcg ttcagagcga taccagcttt agcatcgaac acggaagtgc aaacttcgcc
      181 gttgaaatcg gtagatacta cgtcatcttc ggtgtagccc agaacgcctt tcatttcgcc
      241 ttcagcagcg gctttaacgg cagctttgat ctgctcgtaa gttgcagctt tttccagacg
      301 aacggtcagg tcaactacgg atacgttcgg ggtcggaacg cggaacgcca taccagtcag
      361 tttgccattc agttctggca gtactttacc tacagcttta gcagcaccgg tagaggacgg
      421 gatgatgttc tgggaagcgc cgcggccgcc gcgccagtct ttgtgagacg ggccatcaac
      481 ggttttctga gtagcggtag tagcgtgaac ggtggtcatc agaccttcga tgatgccgaa
      541 gttatcgttg ataactttag ccagcggagc caggcagttg gtggtgcagg aagcgttgga
      601 aacgatgtcc tggccagcat atttgtcgaa gttagcgcct ttaacgaaca tcggagtgtt
      661 gtctttagac ggaccagtca taaccacttt cttcgcacca gcggtgatgt gtttacgagc
      721 agtttcgtca gtcaggaaca gaccagttgc ttcagcgaca acgtcaacac caacttcgtc
      781 ccatttcagg ttagccggat cacgttcagc ggtaacacgg atttttttac cgttaacgat
      841 cagatgaccg tctttcactt caacggtacc gtcgaaacgg ccgtgagtgg agtcatattt
      901 cagcatgtat gccatgtaat cagcgtctaa caggtcgttg attgcaacga tctcgatgtc
      961 agaacgtttc tgagcagcac ggaaaacaat gcgaccgata cggccaaaac cgttgatacc
     1021 tactttgata gtcatatatt ccaccagcta tttgttagtg aataaaaggt tgcctgtaaa
     1081 attacaaaaa ccttacgcag cgtcaagcgg aatcgtgtca atcattgcga caaatcaatc
     1141 ctgtgcctaa gcattatgcg actgactcgc ctcactcttc ctttgggctt gaaaccacat
     1201 ggggtcggcg ccccgaattt taaagggcaa ttacgataaa aatgtgattt tcatcacgat
     1261 ttaggtgcag ccatttcgtc gagatcaagt ttaggacaaa attttgccag ttggtgttaa
     1321 tgttttgtta gaatcagtca cgtaatgtga gcacgattaa agtgagatgt gagcaaatgg
     1381 ctaataaacc ttcggcagaa gaactgaaaa aaaatttgtc cgagatgcag ttttacgtga
     1441 cgcagaatca tgggacagag ccgccattta cggggcgttt actgcataac aagcgtgacg
     1501 gcgtatatca ctgtttgatc tgcgatgccc cgctgtttca ttccgaaacc aagtatgatt
     1561 ccggctgtgg ctggcccagt ttctacgaac cggtgagtga agaatccatt cgttatatca
     1621 aagacttgtc acatggaatg cagcgcatag aaattcgttg cggtaactgt gatgcccatc
     1681 tggggcatgt ctttcccgac gggccgcaac caacaggcga acgttattgt gttaactctg
     1741 cttctttacg cttcactgat ggcgaaaacg gcgaagaaat caacggttga aaaaacgatt
     1801 cagcaactta ttccacagga gcggaaaaat tatgaatctt gatgacatta tcaacagcat
     1861 gacgcctgag gtataccagc gtttgtcgac cgccgttgaa ctggggaaat ggcctgatgg
     1921 cgttgcgttg accgaggaac aaaaagagaa ttgcctgcaa ctggtgatgc tgtggcaagc
     1981 ccgccataat accgaagcac agcatatgac aattgacaca aatggtcaga tggtcatgaa
     2041 gagcaaacag cagttaaaag aagattttgg tatctcagca aagcctattg ctatgtttaa
     2101 gtgaatgagt tatctagtat ttaagcctgt tattaaggga gggcaaatat acttgttcgg
     2161 acgtcgtgtt ttagctgcaa gtaggttaaa tgcaacactg acaagtatta tctggcctac
     2221 aatgtcattg aggaaatgta ggccagagat gaattcaact aatattaccc ctgtgtctct
     2281 tcccagtctg ccagcgtata tagcgttgcc ccagctgctg acatctccat aaacgcgtgt
     2341 gcactgtcct ggggctggat attcacgcca cgacaaccat cggtaatcac gttcacctta
     2401 taacctaact gtaacgcgtc cagcacggta aacttcacgc aatagtcagt agccaggccc
     2461 ataacgatca attcatcgat ttcatgatcg cgtaaccagt catcgagaga ggttttctgc
     2521 cgacggccgt tatcaaaaaa ggcactgtaa ctgtcaacta aaggattttc gcctttatgg
     2581 aacaccgctg cgatcgcttt ttggttcagt aacggatgta attgtgcgcc ttcactgttc
     2641 tgcacacagt gatctggcca gaaggtttgt ggcaaaccgt cgagttggcc tggcgtataa
     2701 ggctctacac cgtgctgact ggcaaaactg ccgtgattcg ccggatgcca gtcctggctg
     2761 gcgataaccg cttctccgcg cgactggcac cagtcaataa ggcggttagc aacctccacc
     2821 gtactgtcac cttccggtac ggcgagcgcg ccaccagcac agaaatcatt ttgtaaatcg
     2881 accagtaaca gggcgcgatg gggcattgca gtctccttaa tcatccggcg tcagttcgcc
     2941 gcgcaggttt tggctcatgg ccttgcgaat ggtttcagta tccagttcct ggctcagcag
     3001 gtaatgcagt ttggttagcg tggcttctac agtcatatct gcaccgccaa taacgccggc
     3061 atgggcgagg gcgttaccgg tggcataacc acccatattc actttaccgg acatacattg
     3121 tgtcaggttg accaccacaa taccgcgatc gctggcttct tgtaattcct gcaggaaggc
     3181 tttgttttgt ggcgcattac ccacgccata ggagcgcaga atcaatgctt tcactggttg
     3241 gcgcagaaaa ttgcgcacga catcagcaga aatccccgga taaatcgtca ctacgccaat
     3301 tggttgtggc gtgattggat gaacgattaa ttccccttca ccgtgcgggg cgggtggcgt
     3361 attcaaacga cgaatatgga taccagcttc cagtaacgga ggaaggtttg gagaggcaaa
     3421 cgcatcaaaa ccatcggcat gggctttggt agtgcggttg ccgcgataca atcggttatt
     3481 gaaaaagagc gttacttcgt tgatcggata attcgccgca acgtacaacg cattcagcag
     3541 attaatttgt ccgtcagagc gtaactcagc cagcgggatt tgtgaccctg tcacaatgac
     3601 cggtttaccg agattctcga gcatgaacga cagcgcagag gcggtatacg ccatcgtgtc
     3661 ggtaccgtgt agaatgacaa aaccatcata gtcgtcatag tgcgctttaa tatcttcagc
     3721 aatatgctgc cagtcatccg gcgtcatatc agaagaatcc atcaacggcg tatattcatg
     3781 aatggtgaaa tctggcatct ccgggcgatg gaattccggc atcagcgcca gttggcgttg
     3841 tagatgacct gacaccggaa tataaccctg ctcggaacgc tgcatcccga tggtcccgcc
     3901 cgtgtaggcg acgtaaattg atttcttttg catgatattg atatgaatga tatcgaaaga
     3961 gcaaaagtat atacgtgagg caggaggagc gcacctgata ctatgcggat aaggaaatat
     4021 ggggcgagac agcgggaaga ggattcgtcg aggtaaaaaa taatgtggcc gacgatctgt
     4081 cggccactca gtacaagact taacgcacgt tggcgcaggt caggcaaaac gcataacggt
     4141 tttgtgggtc gttaaacgcg gccagcttgt cgctttcact tttaacggta gaggctaccg
     4201 aggcaagcgg tgcaggtaac atggcctgga acgcatctgg caacattgcc cggacagaac
     4261 cagacatgtt gtccatcact ttgtcgaaga aggtcggttc atcaacgtag tattccagat
     4321 gccactgttt cacttttgcg agctctgctg ctttggcaac cgcatcatcg aaatccccga
     4381 gactatcgac cagcccgtta gcttttgcat cctgaccggt ccagacgtgg ccctgggcga
     4441 ttttatcaat ttgctccggc gtcgaatgac gcgcatcagc aaccagcgtg ataaagcgtt
     4501 tatagccatt ctcaatgctt aattgcatca tctgctgcgc ttccggcggc agtgccctgg
     4561 tgatagaaac atccgccagc ggtgaagttg agacaccatc agtatgaaca ccaatcgaat
     4621 ccagactatt ttctacggtg gtgatcacgc cgaagatacc gatagaaccg gtcagggtgc
     4681 tggggttagc cacaatgtaa ttagctggcg tggaaatcca gtaaccacca gatgccgcca
     4741 tgccgcccat cgatacaacc acaggcttac ccgctgcccg ggctgctgcc agttcagcgc
     4801 gaatcacttc agacgcggta acgctgccgc ctgggctatt aacacgcagg acaatcgctt
     4861 tcactttcgg gtcaaggcga gcgtcgcgga tttgtgccgc agtggtatca ccgccaacat
     4921 tcccctgagt ttcctcgcca tccataattg cgccattagc gaagacgaca ccgatgctgt
     4981 caccggtatc tgccggcgtt ttcaatgcgt aatcgtaata actgatggcg cgataatttt
     5041 tatcagtctt actccagccg aactctttgg tcagagcttt ttcgatttcg gcactcgatg
     5101 ccagtgcatc gaccagcttg ttttccagtg catatttcgc ggtatcgcca ccggttttgg
     5161 ttaaaccctc aagcaaccct tgcgcgctag ggaatacctg ctgagcaggg atctgccggt
     5221 tagcggcaac agtattcaga tagttttgcc acagctcacc aatccagcgg ctgtcagctt
     5281 cgcgggctgc cggtgacata tcatcacgaa taaacggttc aacggcagat ttatacgtac
     5341 ccacgcggaa cacatgggtg gaaactttca gcttatccag caacgatttg tagtacagac
     5401 cgttggtagc aaaaccgtgc agatcaacca cgccttgcgg tgacagccaa attttattgg
     5461 cgaaactggc gagataatat tgcccctggc tgtagttctc gccaacggca taaaccggtt
     5521 tcccgctgtc acgaaactct ttcagggctt tgccgatgta ctgcatagac ggctggtcgc
     5581 cgcctgcgaa gtttttcaga tccatcacga taccggtgat attgtggtcg tccttcgcct
     5641 ggcgaatggt gttgacgata tcaaacagtg agttttcctg cagacgatcg gaactggcac
     5701 caagcagctg gcggcttaat ttactaaacc gctgagaact gtcgggttta tcgacgatca
     5761 caccggaaat gtccagcagc agtgcgccac gactggccgt ttctttcgaa tcaccaccac
     5821 tgacctgcat ccagatcccc acaccaacca gtacgaggaa aataaagaac aggttaagta
     5881 ccatttcacg gacgaaattc agcagacgcc acgtccattt aaaaaatccg gcaataaatc
     5941 gccaaagggt tcgcatgtat tctcccaact taaggtcaca cctgtcacag gcgcaataga
     6001 tgtggttatc gtaatgaccc aaccgacact tgtcagcagg aattgcggac tgtgctgtaa
     6061 caaaatccac tctcgtgtta attttgtgaa taaatatcac gacaggagtt aatcaaatgg
     6121 atgcactcga actattgatc aatcgccgta gcgcctcccg cctggctgaa cccgcgccaa
     6181 cgggtgaaca actgcaaaac atcctgcgtg cgggtatgcg tgcgccggac cataagtcca
     6241 tgcaaccgtg gcattttttt gtgattgaag gggaagggcg cgagcgtttc agcgccgtac
     6301 tggaacaggg ggcgattgct gccggtagtg atgacaaagc tatcgacaaa gcccgtaatg
     6361 cgccgttccg cgcaccgctc atcatcacgg tggtggcgaa atgcgaagaa aatcataaag
     6421 tcccgcgatg ggaacaggaa atgtctgccg gatgcgcggt catggcgatg caaatggcag
     6481 ccgttgccca gggatttggc ggcatctggc gcagtggcgc attaactgaa agtccggtag
     6541 tgcgtgaagc attcggttgc cgtgagcagg ataaaattgt cggttttctc tacctcggca
     6601 cgccgcagtt gaaagcatct acgtcgatta acgtcccgga cccgacgccg tttgtaactt
     6661 atttctgata attgtcgcga aactgtctgg attgtgagca aaggcgcagg aattcagaca
     6721 ctctcactta tcacttcacg gaatgagggt taccataccc ggattgcatt gacaggagat
     6781 gtccatgagc gagaactcga ttcgtttgac ccaatacagc cacggagctg gttgcggctg
     6841 taaaatttcc ccaaaagtgt tggaaaccat cctgcacagt gagcaggcga agtttgttga
     6901 tccgaatttg cttgtgggta atgagacccg cgacgatgcg gcggtgtacg atctgggcaa
     6961 tggcaccagc gttatcagta ccaccgactt ctttatgccg atcgttgata atcctttcga
     7021 ttttggccgc attgcggcga ctaacgccat cagcgatatc ttcgcgatgg ggggcaaacc
     7081 gattatggcg attgcgatcc tcggctggcc gattaacaaa ctttccccgg aaattgcccg
     7141 cgaagtaacc gaaggtggac gctatgcatg ccgtcaggcg ggtattgcgc tggctggcgg
     7201 tcactccatc gatgcgccgg agccgatttt tggtctggcg gtaacgggga tcgtaccgac
     7261 cgagcgggtg aagaaaaaca gcaccgcaca agccggatgc aaactgttcc tgacgaaacc
     7321 gctggggatc ggcgttctta ccacggctga gaaaaaatca ctgctgaaac cagaacatca
     7381 gggactagcg acggaagtga tgtgccggat gaacatcgca ggcgcgtcct ttgccaacat
     7441 cgaaggcgta aaagcgatga ccgacgttac gggctttggt ctgctgggcc atttgagcga
     7501 aatgtgtcag ggcgcaggtg tgcaggcgcg cgttgactat gacgcgatcc caaaattgcc
     7561 gggggttgaa gagtacatta agttgggcgc agtgcctggc ggcaccgaac gtaactttgc
     7621 cagctacggt catctgatgg gtgaaatgcc gcgtgaagtg cgcgatttgc tgtgcgatcc
     7681 gcaaacttct ggcggtttgc tgctggcggt catgccggaa gcagaaaatg aggtcaaagc
     7741 tacagccgcc gagtttggca ttgaactgac ggcaattggc gaactggtgc cagcgcgcgg
     7801 cggtcgtgcc atggttgaga ttcgttaatt caatgcggtt gtttattgcc gaaaaaccga
     7861 gtctggcgcg cgccattgct gatgtcctgc ccaaaccgca ccggaaaggc gatggcttta
     7921 tcgagtgcgg taatggtcag gtggtgacct ggtgtatcgg tcacctgctt gagcaggcgc
     7981 agccagacgc ctacgacagc cgctatgcgc gctggaatct tgcggatttg ccgattgtcc
     8041 cggaaaagtg gcaattacag ccccgaccct ccgtgaccaa acaacttaac gtcatcaaac
     8101 gcttcctgca tgaagccagc gaaatcgttc acgccgggga cccggatcgt gaagggcaac
     8161 tgctggtgga tgaagtgctg gactatctgc aactggcacc ggaaaagcgc cagcaggtgc
     8221 agcgttgctt gataaacgac ctgaacccgc aggcggttga gcgggcgatc gaccgtcttc
     8281 ggtccaacag tgagtttgtg ccattgtgcg tttctgcgct ggcgcgagcg cgtgccgact
     8341 ggctgtacgg catcaatatg acccgtgcgt ataccattct cggtcgcaat gccggttatc
     8401 agggcgtact ttccgtggga cgcgtgcaga cacccgtgct cgggctggtg gtgcgccgcg
     8461 atgaagagat tgaaaacttc gtggcgaaag acttctttga agtcaaagca catatcgtga
     8521 cacctgccga tgagcggttt accgctatct ggcaaccgag cgaagcgtgt gaaccgtacc
     8581 aggatgaaga agggcgcttg ttacatcgtc cactggcgga gcatgtggtt aaccgcatta
     8641 gtggtcaacc agcaattgtc accagctata acgataaacg ggaatcagaa tccgcgccgc
     8701 tgcctttttc gctttcggcg ttgcagattg aagcggcaaa acgctttggt ctgagcgcgc
     8761 agaacgtgct tgatatctgc cagaagctgt acgaaacgca caagctaatc acttatccgc
     8821 gttccgattg tcgctatttg ccagaagaac attttgccgg acgccacgcg gtgatgaatg
     8881 ccatcagcgt tcatgcacca gatctgttgc cgcaaccagt ggtagatcca gatatacgca
     8941 accgctgttg ggatgacaaa aaggtcgatg cacaccacgc catcatcccg accgcacgga
     9001 gttctgcgat caacctgacg gagaacgaag cgaaggtcta taacctgatt gcccgtcagt
     9061 acttgatgca gttctgcccg gatgcggtgt tccgcaagtg tgttatcgaa ctggacattg
     9121 ccaaaggcaa atttgtcgct aaagcgcgtt ttcttgctga agcaggctgg cgcacgctgt
     9181 taggcagcaa agagcgcgat gaagaaaacg acggtacgcc attgcctgtg gtggcgaaag
     9241 gcgatgagtt gctgtgtgaa aaaggtgaag tggtagagcg gcaaacccag ccgccgcgcc
     9301 attttaccga tgcaacactg ctttcggcga tgaccgggat cgcgcgcttt gtgcaggaca
     9361 aagatctgaa aaagatcctt cgtgcgaccg atggtctggg gacagaagca acccgtgccg
     9421 ggattattga actgctgttc aagcgtggtt ttctgaccaa aaaagggcgc tatatccact
     9481 ctaccgacgc cggaaaagcg ttattccatt cgctgccaga aatggcgacg cgaccggaca
     9541 tgaccgcgca ctgggaatcg gtgctgacgc aaatcagcga aaagcagtgt cgctatcagg
     9601 actttatgca gccgctggtg gggacgctat atcagcttat tgatcaagcc aaacgtacgc
     9661 cggtgcggca gtttcgcggc attgtggctc cgggcagtgg tggcagtgct gataagaaaa
     9721 aggctgcacc gcgtaaacgt agtgcgaaaa aaagtccgcc agcagatgaa gtcggaagcg
     9781 gggcgatagc gtaagcgagt gaatctttcg tgctattcga gtcatattct gaaatatcca
     9841 gcgaatcaag aaaattcgtt ggatattttt ttgcatggat aaaattatcg cctctaaagt
     9901 atgtaataac agggaatgtg atgaaaaaag ttttattaca aaaccatcct gggagcgaga
     9961 agtattcttt taatggctgg gaaatattta atagtaattt tgaacggatg attaaagaaa
    10021 ataaggccat gctgctttgt aagtgggggt tttatttaac atgtgttgtc gctgtaatgt
    10081 ttgtgttcgc agcgataaca tccaacggtt tgaatgaaag aggcctgatt accgcgggat
    10141 gctcttttct ttatctatta attatgatgg ggcttattgt tcgggccggt tttaaagcaa
    10201 aaaaagaaca actgcattat tatcaggcta aaggtattga gccgctcagt atcgagaagt
    10261 tacaggcgct acaattgatc acaccttatc gattctatca taagcaatgg tctgaaacgc
    10321 tggagttctg gccgcgaaag cctgaacctg gcaaagatac cttccaatat cat
//
LOCUS       DAJVUP010000150        10364 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.150, whole genome shotgun sequence.
ACCESSION   DAJVUP010000150 DAJVUP010000000
VERSION     DAJVUP010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10364
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.150"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            303..1916
                     /gene="trg"
                     /locus_tag="OQQ75_003399"
                     /pseudo
     CDS             303..1916
                     /gene="trg"
                     /locus_tag="OQQ75_003399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415938.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein Trg"
     gene            complement(1954..2876)
                     /locus_tag="OQQ75_003400"
                     /pseudo
     CDS             complement(1954..2876)
                     /locus_tag="OQQ75_003400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310054.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            3093..4436
                     /locus_tag="OQQ75_003401"
     CDS             3093..4436
                     /locus_tag="OQQ75_003401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1977609.1"
                     /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL
                     ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA
                     GGPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR
                     QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEYRLIADVVCFP
                     GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF
                     AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP
                     DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHLGDDPQPLIERGWVVAQPITYEDFLPVS
                     AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL"
     gene            4661..6316
                     /gene="opgD"
                     /locus_tag="OQQ75_003402"
                     /gene_synonym="mdoD"
     CDS             4661..6316
                     /gene="opgD"
                     /locus_tag="OQQ75_003402"
                     /gene_synonym="mdoD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein OpgD"
                     /protein_id="HCS1977610.1"
                     /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR
                     FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD
                     AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG
                     FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW
                     FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP
                     MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP
                     KGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLDNIVC
                     FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFPEGWAPGEHYPEK
                     WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD
                     STDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS"
     gene            6456..6680
                     /locus_tag="OQQ75_003403"
     CDS             6456..6680
                     /locus_tag="OQQ75_003403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415943.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HCS1977611.1"
                     /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGFDGRGY
                     NAEVVRMKKQKLQLKDEMLKILQQESVKGV"
     gene            6743..7279
                     /gene="rimL"
                     /locus_tag="OQQ75_003404"
     CDS             6743..7279
                     /gene="rimL"
                     /locus_tag="OQQ75_003404"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12-serine
                     acetyltransferase"
                     /protein_id="HCS1977612.1"
                     /translation="MTETIKVSESLELHAVAESHVTPLYQLICKNKTWLQQSLNWPQF
                     VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE
                     SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE
                     FLNDAYDDVNLYARIIDS"
     gene            complement(7274..8254)
                     /locus_tag="OQQ75_003405"
                     /pseudo
     CDS             complement(7274..8254)
                     /locus_tag="OQQ75_003405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707644.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8378..9370
                     /gene="tehA"
                     /locus_tag="OQQ75_003406"
     CDS             8378..9370
                     /gene="tehA"
                     /locus_tag="OQQ75_003406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HCS1977613.1"
                     /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL
                     VILAMIIWGLLTSAFITRLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR
                     PLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATMPGLYLPTVANNFISAMACGALG
                     YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV
                     NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS
                     GSENGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE"
     gene            9367..9960
                     /gene="tehB"
                     /locus_tag="OQQ75_003407"
     CDS             9367..9960
                     /gene="tehB"
                     /locus_tag="OQQ75_003407"
                     /EC_number="2.1.1.265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
                     /protein_id="HCS1977614.1"
                     /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN
                     SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST
                     VVLMFLEAKTIPGLIANMQRCTKLGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY
                     EGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK"
     gene            10263..>10364
                     /locus_tag="OQQ75_003408"
     CDS             10263..>10364
                     /locus_tag="OQQ75_003408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
                     /protein_id="HCS1977615.1"
                     /translation="MRTTSFAKVAALCGLLALSGCASKITQPDKYSGF"
BASE COUNT         2655 a         2418 c         2616 g         2675 t
ORIGIN      
        1 tcgtctttct gattcccggt tagcctgaaa acagaaagtc tcaggcaccc gcaggcatcc
       61 tatgaggttt ccttagggac gaaaataatc acttcacgaa attgcgtgct gttttccaga
      121 atttttcgtc attcggatta gccagtttag ccattcgtta ctctcttcat tccaatagca
      181 ttaattttct ctgcaataat tgttgtaaaa atgtgacgca aagaggtttt tggtcataag
      241 taattaccgt caagtgccga tgactttcta tcaggagtaa acctggacga gagacaacgg
      301 taatgaatac aactccctca cagcgattag gttttttgca tcacatcagg ctggttccgt
      361 tatttgcctg cattcttggc ggtatcttag ttctattcgc attaagttct gctctggcag
      421 gccgatcgcg atcagcgtga tgttactgcg gagattgaga ttcggaccgg gttagcgaac
      481 agttcagatt ttttgcgttc agcccggatc aatatgattc aggccggggc tgcgagtcgt
      541 attgcggaaa tggaagcaat gaagcgaaat attgcgcaag ccgaatcgga gattaaacag
      601 tcgcagcaag gttatcgtgc ttatcagaat cgaccggtga aaacacctgc tgatgaagcc
      661 ctcgacactg aattaaatca acgctttcag gcttatatca cgggtatgca acctatgttg
      721 aaatatgcca aaaatggcat gtttgaagcg attatcaatc atgaaagtga gcagatccga
      781 ccgctggata atgcttatac cgatattttg aacaaagccg ttaagatacg tagcaccaga
      841 gccaaccaac tggcggaact ggcccatcag cgcacccgcc tgggtgggat gttcatgatt
      901 ggcgcgtttg tgcgtgccct ggtcatgacg ctgataacat ttatggtgct acgtcggatc
      961 gtcattcgtc cactgcaaca tgccgcacaa cggattgaaa aaatcgccag tggcgatctg
     1021 acgatgaatg atgaatcggc gggtcgtaat gaaatcggtc gcttaagtcg tcatttacag
     1081 caaatgcagc attcactggg gatgacagta gggactgttc gacagggcgc ggaagagatt
     1141 tatcgtggca ccagcgaaat ttcagctggc aatgcggacc tgtcatctcg caccgaagaa
     1201 caagcggcgg ctatcgaaca aactgccgcc agcatggagc aactcactgc gacggtgaaa
     1261 cagaatgcgg ataacgcgca tcatgccagc aaactggcgc aagaggcttc tattaaagcc
     1321 agcgatggcg ggcagacgga gtaaaaacga tgggcgctat ctccacgagt tcgaagaaaa
     1381 tttctgagat caccgccgtc atcaacagta ttgctttcca gacgaatatt ctggcactga
     1441 atgctgccgt tgaagccgcg cgagcgggtg agcaagggcg tggatttgcc gttgtcgcca
     1501 gcgaagtacg gacactcgca agtcgcagcg ctcaggcggc gaaagagatt gaaggcttga
     1561 tcagtgaatc agtcaggtta attgacctgg ggtcggatga ggtggcaacg gccgggaaaa
     1621 ccatgagcac tattgttgat gccgtcgcga gtgtcacaca tatcatgcag gaaatcgccg
     1681 ccgcctcgga tgaacaaagt agaggcataa cgcaggttag ccaggcgatt tctgaaatgg
     1741 ataaggtgac gcaacagaat gcttctctgg tagaagaggc ctcagcggcg gcggtgtccc
     1801 ttgaagaaca ggcggcacga ttaactgagg cggtggatgt attccgtctg aacaaacatt
     1861 ctgtgtcggc agaacctcgc ggagcgggtg aaccagttag tttcgctacg gtgtgaaaat
     1921 gttcaaggag ggatcgacag atcccttcac ctttcagaac ggcattgatt ttcgaatagc
     1981 gttaatcatc aactggcaac cagaagagaa catcgcatct acgcgggtca gtattccaat
     2041 cggttcgcct gcaccatgtc ccggaacagg ctgggccacc agcgtggcat gacgcaggtc
     2101 gtcttttacc gcgccagaag ggacaaacca cacgtagtcg tattcaaccg taagttgacg
     2161 agatagcgaa gcagacagcg tttcgataca acccgaagga attttacatc cctggctctg
     2221 tactaatgca tctgaatgct ggcgtggcgc agtgccttct ggtgatacaa cgaccggcca
     2281 tttcagcact cggcttagcg ttacgttctc ctgaagtagc gggtgattag ggcggacaac
     2341 cagcttcagc gattcaagaa acagcagttc gtaattaagc ccggtcatca gttcaggatc
     2401 tgacatccga ccaatgccga tatcgatttc cccggttttc aaacccgcca gaatcatagg
     2461 gttactcatt gtcgcaactt gcaaggtcgt ctctttttgt tgctgatgaa actgacctat
     2521 aaccgaaggt aatatcccca gtgccgcagt aggtagtgca ccaatcctga cgacatcatt
     2581 attaagacct tctttacgat gaagcgactg tccggcagtg ttgatggcgt caagaactct
     2641 gactgcatgc gttaaaaatt gttcgccggg taaggtaagt tgcgccccct gacgaccacg
     2701 ctcaaacaag cgagcgcccg tcagctgcta cagttcattc aatgtcttag agagcgcagg
     2761 ttgactcaaa ttaagggttt cagccgcgcc cccaaagttc cttgttgtgc gacagctacg
     2821 aatgtatgaa ggtggcgcaa acggatgcgc tgactaaaca gactattttt ttccataagc
     2881 gatgttaaaa acgaagcggt gtcgctgaca agtgaagttg tttgattatg ataacttgat
     2941 tgcaaaatat aattaacaat taaagcaatt gtgttacagc aaaatggata atattgatgt
     3001 tttcgcggcg agatcacagt ttgtaaattc ttcccgccag agtgaatgcg gttacctaca
     3061 ctccagatta ctgaccactg gaggcagaca ctatggcgaa cagcatcacg gcggatgaga
     3121 ttcgggaaca gttttcgcag gcaatgtcag ccatgtacca gcaagaagtt ccgcagtacg
     3181 gcacgctgct ggaactggta gctgatgtga atctggctgt gctggaaaac aatcctcaac
     3241 tgcacgaaaa aatggtaaat gcagatgagc tggcgcgact gaatgttgaa cgtcatgggg
     3301 cgattcgcgt tgggactgca caagagcttg ctactcttcg gcggatgttt gccattatgg
     3361 ggatgtaccc ggtgagctat tacgatctct cgcaggcagg ggggccggta cattcgacag
     3421 catttcggcc cattgatgat gcttctctgg cgcgtaatcc cttccgcgtt tttacctcct
     3481 tactccgcct tgagcttatc gagaacgaaa ttttgcgcca gaaagcggcg gagattctgc
     3541 gtcagcgcga tatcttcacc ccacgttgtc gacaactgtt agaggaatat gagcagcagg
     3601 gcggttttaa cgaaacacag gcacaggaat ttgtgcaaga ggccctggaa acgtttcgct
     3661 ggcaccagtc agcaacggta gatgaagaaa cctatcgcgc cttgcacaac gaatatcggt
     3721 tgattgctga tgtggtctgt tttcctggat gccatatcaa ccacctgacg ccacgtacgc
     3781 tggatattga ccgggtgcag tcgatgatgc ctgaatgcgg aattgaaccc aaaattctca
     3841 tcgaggggcc gccgcgccgc gaggtaccga ttttactacg ccagaccagc tttaaagcac
     3901 tggaagagac ggtgttgttt gcggggcaga aacagggcac gcataccgcg cgctttggtg
     3961 aaattgagca gcgtggcgtg gcattaacgc cgaaagggcg acaactgtat gatgatcttc
     4021 tgcgtaacgc tggaaccggg caggataatc tcactcacca aatgcattta caggaaacct
     4081 tccgcacttt tcctgacagt gagtttttaa tgcgtcagca agggttggca tggttccggt
     4141 accgtctgac gccttcgggt gaggcgcatc gtcaggcgat tcatcttgga gacgatccac
     4201 agcctttaat tgaacgtggt tgggtagtgg cgcaacccat cacctatgaa gatttcttgc
     4261 ccgttagcgc ggcggggatc ttccagtcaa atctgggtaa tgaaacgcag acacgcagtc
     4321 acggtaatgc cagtcgcgaa gcatttgagc aggcgttggg ttgtccggtt ttggatgagt
     4381 tccagcttta ccaggaagcg gaagaacgca gtaaacgtcg ctgtggtttg ctttaaattc
     4441 tgaccatccg cctttgcaaa aatttgcctg attttacaaa cgaatcaggc tcatcccatc
     4501 gacataaaaa aaatgccgat ttatgcatat tctctcagtt caacaattgg attattaata
     4561 aatattgtct agagtgagcg gtcataaata agcactttct tgccgctgaa aacgaccagc
     4621 gcgggaccat tcacaacacc agaaggactc actttcaggt atggatcgta gacgatttat
     4681 taaaggttca atggctatgg ccgccgtgtg cggtaccagc ggcattgctt ctcttttttc
     4741 tcaggcggca ttcgcggcag attctgatat tgccgacggg caaacccagc gttttgactt
     4801 ctccattcta cagtcaatgg cgcacgactt agcgcaaaca gcgtggcgtg gtgcgcctcg
     4861 tccgttacct gacacgctgg cgacaatgac gccgcaggct tataacagta ttcaatacga
     4921 cgccgaaaaa tcgctctggc ataacgttga gaaccgtcaa ctggacgctc agttcttcca
     4981 tatgggaatg ggattccgtc gccgcgttcg tatgttttct gtagatccag caacacatct
     5041 ggcgcgtgaa attcactttc gcccggagtt gttcaaatac aacgatgcgg gtgttgatac
     5101 aaaacaatta gaagggcaaa gcgatctcgg ctttgccggt tttcgcgtgt ttaaagcccc
     5161 cgaactggcg cgccgtgatg tagtatcatt tctcggcgcg agttatttcc gcgccgttga
     5221 tgatacatat caatacggtt tgtcggcccg cggcctggcg atcgacactt acaccgacag
     5281 taaagaagag ttccccgact ttaccgcctt ctggtttgat acggtaaaac cgggggcaac
     5341 tacctttacc gtttatgcgt tgctcgatag cgccagcatt actggtgcct ataagttcac
     5401 tatccattgt gagaaaagtc aggtgattat ggatgtggaa aatcacctgt atgcgcgcaa
     5461 agacattaaa cagctgggca ttgcgccgat gaccagtatg ttcagctgcg gtactaatga
     5521 acgtcggatg tgcgatacaa ttcatccgca aattcatgac tctgatcgtc tgtccatgtg
     5581 gcggggcaac ggcgagtgga tttgccgtcc gctgaataat ccgcaaaaat tgcagttcaa
     5641 tgcttacacc gacaacaacc cgaaagggtt tggtttattg caactggatc gtgacttctc
     5701 ccattatcag gacattatgg gctggtataa caaacgccca agtctgtggg tggaaccgcg
     5761 taacaagtgg ggtaagggca ccatcggcct gatggaaatc ccaacaacgg gcgaaacgct
     5821 ggataacatt gtctgtttct ggcagccaga aaaagctgta aaagcaggtg atgagtttgc
     5881 attccagtat cgtctgtact ggagtgcgca accgcctgtt cattgcccat tagcgcgcgt
     5941 tatggcgacg cgtaccggca tgggcggttt cccggaaggt tgggcgccag gtgaacacta
     6001 tcccgaaaaa tgggcgcgtc gttttgccgt cgatttcgtt ggtggtgatc tgaaagctgc
     6061 cgcgccaaaa ggcattgagc cggtgattac gctttccagt ggggaagcga agcaaatcga
     6121 aattctctat attgaaccca tcgatggtta tcgtattcag tttgactggt atccgacttc
     6181 ggactccact gatccggtcg atatgcggat gtatctacgt tgtcaggggg acgctatcag
     6241 tgaaacatgg ctgtatcagt atttcccgcc agcgccggat aaacgtcagt atgttgacga
     6301 ccgcgtgatg agttaatcgt tttttcttcg gcaccttctt cgggaggtgc cgtctggtta
     6361 aacacgatcc cgctcgcatt tttccctaag ttaaatgagt aatctgatgg tgtgtatttc
     6421 agatacacct tgtcagccac taacagggag tgcgtatgtt tccagaatac cgagatttaa
     6481 tatcccgtct gaaaaacgaa aatcctcgct ttatgtcctt gttcgataaa cacaataaac
     6541 ttgatcatga aattgccaga aaggaaggtt tcgacggtcg agggtacaat gcggaagtgg
     6601 tccgcatgaa aaaacaaaag ctacagttaa aagatgagat gctcaaaatc ctgcagcagg
     6661 agagcgtcaa aggggtgtaa actttcctaa gccgccagcc aggcggcttt tttaacaaca
     6721 gcatggattg actggagata agatgactga aacgataaaa gtaagcgaat cacttgaatt
     6781 acatgctgtt gcggaaagtc acgtcacacc tctttatcag ttaatctgta aaaataaaac
     6841 ctggttacag cagtcgctaa actggccgca gttcgttcag agtgaagagg acacgcgaaa
     6901 aacggtgcag ggtaatgtga tgttgcatca acgcggctat gccaaaatgt tcatgatttt
     6961 caaagaagat gaacttatcg gcgttatctc gtttaatcgt attgaaccac tgaataaaac
     7021 tgctgaaatc ggctactggc tggacgaatc tcatcagggg caggggatca tttctcaggc
     7081 gctgcaggca ttgattcatc attacgctca gtctggtgaa cttagacgct tcgtgatcaa
     7141 atgtcgggtg gacaatccgc aaagcaacca ggtcgctttg cgcaatggtt ttatccttga
     7201 aggttgcctg aaacaggctg agttcctgaa tgatgcctat gatgatgtga acttatacgc
     7261 gcgtattatc gattcataat aaccctgcca gcggcgttcg cgtaatgcgc tcctcgccgt
     7321 taatgacttt tggaccacgg acatgaaccg tgtcgccatc aaaggcttca acgacggcgt
     7381 ggtcggttaa ctccacatgg ttttcaatta tcaccgcacc tgaaatacgg ctctcacctt
     7441 gtattacaac gtgctcgtcg agcagaatcg gttcaccacg taccacggca tttccgccaa
     7501 tcaagacatg atgttttaac acacaattac cttccacaat ggcatattcc gccacctgcg
     7561 aactgtaatg aatcgtcgga atggcatctt cttctatgcc agctttcacc tgcgcgtgac
     7621 cgtagacttt agcgcaatcg catagccaga cgttgttctc ttcattacct tcaacactgg
     7681 caaaatcaaa aacttcggcg cgatgttcaa taaaagcata ccggacgacg gcatcgccat
     7741 aaatttgtgc ctggtggaca atacgcgagg cgctaaccct tgcgcgatca taaatttgga
     7801 gcaggagttg atggtcgggc gttaagcctt gtgcggcgac gatcatagaa tgttgatcaa
     7861 ttaaggcgtg accaaatatt ctacattgcc cgtaaactaa tgagtcatga atggtgacac
     7921 tgtcacttat atatgcaccc tgactgattt cactattatc gatccagacg ttatccgttg
     7981 cgtaaacctc tccccacagc acgctggtgc cggtgatacg cgtattacca gaaatcaccg
     8041 ttccgccgaa cgcaatagca ttctggtcgt aaatccagca atttccttcc tatgctaaca
     8101 ccgtttcgcg atcgatccag ccgccagcgg ttcctgctat cacatcgtta aaatcgctaa
     8161 tggcgataat ctgccgtaat aacacacttt ttttagtgcc atcttcctga taactaaagg
     8221 ctcgctgttc ttcacttaga cgatatttgc gcatagcgtt ttctcacagg tgacttacta
     8281 tgaccgtagc aaattctgcg gctctggcta tgctcgagaa aattccataa aatgcatttc
     8341 aaatatactt tataaattaa acaaaatgag taagaagatg cagagcgata aagtgctcaa
     8401 tttgccggca ggctactttg gtattgtgtt ggggacgata gggatgggat ttgcctggcg
     8461 ctatgccagc caggtttggc aggtcagcca ctggttaggg gatgggctgg tgattctggc
     8521 gatgatcatc tggggattat taactagcgc atttattacc cgactcatac gctttccgca
     8581 tagcgtgctg gcggaagttc gccatccagt gctgagcagt tttgtgagtt tgtttccggc
     8641 aacgacgatg ctggtggcga ttggttttgt tccgtggttt cgcccactgg cggtgtgcct
     8701 gttcagtttt ggtgtcgtgg ttcagttggc ttatgccgcc tggcaaactg cgggattatg
     8761 gcgcggatct caccctgaag aagctaccat gcctggactg tatctgccga cagttgccaa
     8821 caactttatc agcgcaatgg cctgtggtgc gttgggctac accgacgccg gtctggtgtt
     8881 tttaggcgca ggcgttttct catggctaag ccttgaaccg gtgatattgc agcgtctgcg
     8941 cagttcggga gaattaccca cggcactgcg gacatcactc ggcattcagc tcgctcctgc
     9001 gctggtggcc tgtagtgcct ggttgagcgt caacggcggc gagggtgata cgctggcgaa
     9061 aatgcttttt ggttatggac tgctgcaact gctgtttatg ctacgtctga tgccatggta
     9121 tctctcccag ccatttaatg cttcattctg gagtttctcg ttcggcgtat ctgcactggc
     9181 aaccaccggt ttgcatctgg ggagtggcag cgaaaatgga tttttccata cgctggcggt
     9241 accgctgttt atctttacca attttattat tgcaatactg ctcatccgta cttttgcgct
     9301 tctgatgcag ggaaaattgt tagtcagaac cgagcgcgct gttttaatga aagcagagga
     9361 caaagaatga tcattcgtga cgaaaactat tttactgata aatatgaatt aacccgcaca
     9421 cactctgaag tactggaagc ggtgaaagtg gttaaaccgg gtaaaacgct ggatctgggc
     9481 tgtggcaatg gtcgtaacag tctttacctg gcagccaatg gttatgatgt tgacgcatgg
     9541 gataaaaatg ccatgagtat cgccaatgta gagcgcatta aatccattga aaatctggat
     9601 aatttacaca cccgagtcgt tgatctgaat aacctcacat ttgatagaca gtacgatttt
     9661 attctttcga ctgtggtact gatgttcctt gaggctaaaa ccatcccagg gctgattgcc
     9721 aatatgcaac gttgcactaa acttggtggt tacaacctga ttgtggcggc gatggatacc
     9781 gctgattatc catgtaccgt cggcttcccg tttgccttca aagagggaga attacgtcga
     9841 tattacgaag gctgggagag ggtgaaatac aatgaagacg tcggcgagct gcaccgcacc
     9901 gacgccaacg gtaatcgtat taaactgcgt ttcgccacga tgctggcacg taaaaaatga
     9961 cccgctaaga ataaggcgcg tgaaaattcc ccacgctgag atgatttact gttcttcttt
    10021 tcggtaagca tattttttat cgaagggatg tgaaattaat cacagtagtc gaagtttttt
    10081 agcagcttaa cttactgaaa tttaactact gatgattgac ttagcccctt tttcggcatt
    10141 gactatgtcg tctgaaaagg ggctgaaaaa tttattttca ccaacacttt ttttgccaca
    10201 acacgaagcg gcgctttttg ctataactta aaaagtaata taatcatctc aggaaactat
    10261 tcatgcgtac cacatcattt gcgaaagttg cagctttatg cggcttgttg gctctgtctg
    10321 gttgtgcctc taaaatcacc cagccagata aatattctgg tttt
//
LOCUS       DAJVUP010000151        10330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.151, whole genome shotgun sequence.
ACCESSION   DAJVUP010000151 DAJVUP010000000
VERSION     DAJVUP010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.151"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            121..987
                     /gene="folD"
                     /locus_tag="OQQ75_003409"
     CDS             121..987
                     /gene="folD"
                     /locus_tag="OQQ75_003409"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HCS1977616.1"
                     /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN
                     PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLP
                     AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL
                     NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG
                     DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL
                     QACVEYHDPQGE"
     gene            989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ75_003410"
     CDS             989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ75_003410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308617.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein YbcJ"
                     /protein_id="HCS1977617.1"
                     /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA
                     VETRKRCKIVAGQTVSFAGHSVQVVA"
     gene            1309..1830
                     /locus_tag="OQQ75_003411"
     CDS             1309..1830
                     /locus_tag="OQQ75_003411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1977618.1"
                     /translation="MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLS
                     FKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSL
                     LDSVTTGGKGVGWLWPWSDERFFAPWQMIKVAPFALSRYTTPYGHQVIISELMWVWLP
                     GMVLMGMLWWRRR"
     gene            complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ75_003412"
     CDS             complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ75_003412"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HCS1977619.1"
                     /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF
                     VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDA
                     LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL
                     DQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG
                     NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT
                     VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAG
                     GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG
                     LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE
                     DGPQGTTWRRK"
     gene            3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ75_003413"
     CDS             3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ75_003413"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase B"
                     /protein_id="HCS1977620.1"
                     /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV
                     INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV
                     VDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV
                     TVSE"
     gene            3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ75_003414"
     CDS             3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ75_003414"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HCS1977621.1"
                     /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE
                     AWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV
                     LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANS
                     KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA
                     WHTEGSMVKVTADDVELIHFPF"
     gene            4762..5271
                     /gene="purE"
                     /locus_tag="OQQ75_003415"
     CDS             4762..5271
                     /gene="purE"
                     /locus_tag="OQQ75_003415"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HCS1977622.1"
                     /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSA
                     HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD
                     SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL
                     ENPDPRGAA"
     gene            5268..6335
                     /gene="purK"
                     /locus_tag="OQQ75_003416"
     CDS             5268..6335
                     /gene="purK"
                     /locus_tag="OQQ75_003416"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HCS1977623.1"
                     /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS
                     VITAEIERWPETVLTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAD
                     RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSG
                     EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG
                     YMGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVV
                     NNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA
                     LIPLLPPEYASGVIWAQSKFS"
     gene            complement(6472..7363)
                     /locus_tag="OQQ75_003417"
                     /pseudo
     CDS             complement(6472..7363)
                     /locus_tag="OQQ75_003417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706399.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
     gene            complement(7360..8175)
                     /locus_tag="OQQ75_003418"
     CDS             complement(7360..8175)
                     /locus_tag="OQQ75_003418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HCS1977624.1"
                     /translation="MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHR
                     QGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPP
                     SHPQPLAAAWMQRAEETGLFGPLAMAASDPLTAELRQFRHCFQAALNGVKTDWRHWLG
                     KGPGLTPSHDDTLSGMLLAAWYYGALDARAGRPFFACSDNLQLVTTAVSVSYLRYAAQ
                     GYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP"
     gene            complement(8186..9445)
                     /locus_tag="OQQ75_003419"
     CDS             complement(8186..9445)
                     /locus_tag="OQQ75_003419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009029994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HCS1977625.1"
                     /translation="MFTSVAQANAAVIEQIRRARPHWLDVQPAFSLISELNEGKTLLH
                     AGPPMRWQEMTGPMKGACVGGCLFEGWAKDEAQALAMLEQGEVNFIPCHHVNAVGPMG
                     GITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLS
                     AALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEV
                     IDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT
                     APVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAR
                     AVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ
                     IGAGTVRAPLACFEQALEALAESMGIG"
     gene            complement(9455..10330)
                     /gene="fdrA"
                     /locus_tag="OQQ75_003420"
                     /pseudo
     CDS             complement(9455..10330)
                     /gene="fdrA"
                     /locus_tag="OQQ75_003420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415051.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
BASE COUNT         2273 a         2938 c         2773 g         2346 t
ORIGIN      
        1 aaccttcgca agaggtcgct tcacgcgata aatctgaaac gaaacctgac agcgcgcccc
       61 gcttctgaca aaataggcgc atccccttcg acctacgtaa cagatggaat cctctctctg
      121 atggcagcaa agattattga cggtaaaacg attgcgcagc aggtgcgctc tgaagttgct
      181 caaaaagttc aggcgcgtat tgcagccgga ctgcgggcac caggactggc cgttgtgctg
      241 gtgggtagta accctgcatc gcaaatttat gtcgcaagca aacgcaaggc ttgtgaagaa
      301 gtcgggttcg tctcccgctc ttatgacctc ccggaaacca ccagcgaagc ggagctgttg
      361 gagcttatcg atgcgctgaa tgccgacaac accatcgatg gcattctggt tcaactgccg
      421 ttaccggcgg gtattgataa cgtcaaagtg ctggaacgta ttcatccgga caaagacgtg
      481 gacggtttcc atccttataa cgtcggtcgt ctgtgccagc gcgcgccgcg tctgcgtccc
      541 tgcaccccgc gcggtatcgt cacgctgctt gagcgttaca acattgatac cttcggcctt
      601 aacgccgtgg tgattggcgc atcgaatatc gtcggtcgtc caatgagcat ggaactgttg
      661 ctcgcaggtt gcaccactac cgtgactcac cgtttcacta aaaatctgcg tcaccacgta
      721 gaaaatgccg atctgttgat cgttgccgtc ggcaagccgg gctttattcc tggtgactgg
      781 atcaaagaag gcgcaattgt gattgatgtc ggcatcaacc gtctggaaaa tggcaaagtt
      841 gtgggcgacg tcgtgtttga agacgcggct aaacgcgcct catacattac gcctgttccg
      901 ggcggcgttg gcccgatgac ggttgccacg ctgattgaaa acacgcttca ggcgtgcgtt
      961 gaatatcatg atccacaggg tgagtaacat ggcgacattt tctttaggta aacatccgca
     1021 cgttgagctg tgcgatttgc tgaaactgga aggctggagc gaaagcggcg cgcaggcgaa
     1081 aatcgcgatt gccgaaggcc aggtgaaagt cgacggtgcg gttgaaacgc gcaaacgctg
     1141 caaaatcgtc gccggtcaga cagtgagttt tgcaggtcac agcgtacagg ttgttgcctg
     1201 atccctttcc cggcctgtat caacaggccg gttctctttt cagacttttg ccctctacgc
     1261 cccgttcatc catgctgata gcatcgacat tttgccgaag cgaccatcat gccaaccgtt
     1321 attacgcacg ccgccgttcc cctatgcatt ggtttagggt tgggttcgaa agtcatccct
     1381 ccgcgtctgt tatttgccgg aatcatcctg gcgatgctgc ccgacgccga cgtattgtcg
     1441 tttaaatttg gcgttgctta cggcaatgtt tttggtcatc gcgggtttac ccattcgctg
     1501 gtgtttgcgt ttgttgtccc gctgttatgt gtgctgattg gacgccgatg gttcagggct
     1561 gggcttattc gctgctggct gtttttaacc gtctcgttgc tatcgcacag cttgctggat
     1621 tcggtaacca ctggcggtaa gggcgttggc tggctgtggc cgtggtcaga tgaacgcttt
     1681 ttcgctccct ggcagatgat taaagtcgcg ccgtttgcat tgtctcgtta caccacgccg
     1741 tacgggcatc aggtgataat ttctgaattg atgtgggtgt ggttgccggg gatggtgctt
     1801 atgggaatgt tgtggtggcg caggcgataa ccggatgcga aaactcgcat ccggcaacag
     1861 cgcaattact tacgacgcca ggtggtccct tgcgggccat cttccagcac gatccccatc
     1921 tcgttaagac ggtcacgcgc cgcatctgcc gccgcccagt ctttcgcttt acgggcatcc
     1981 agacgctgtt gaattaacgc ttcaatctca gccacttcgc tgtcgtctgc ctgcgcgccg
     2041 ctttgcagga acgcttccgg ttcttgctcc agcaggccca atacagcgga aagtttacgc
     2101 aggtgagatg ccattgcatt cgccgctgcc atatcttctg ctttcagacg gtttacttca
     2161 cgcgccatat caaacagtac ggaataggct tccggggtgt tgaaatcgtc gtccatcgct
     2221 tcaataaagc gcgcttcaaa cgcttcgcca ccggcaggcg caacggtttt atctgtgccg
     2281 cgcagcgcag tgtagagacg ctccagcgcc gcacgcgtct gcttcaggtt ctcttcgctg
     2341 tagttcaact ggctgcgata gtggcccgac atcaggaagt aacgcacggt ttccgcgtcg
     2401 tagtatttca gcacatcgcg cacggtaaag aagttaccca gcgatttgga catcttctcg
     2461 cggtcaacca tcaccattcc ggagtgcatc cagtagttca catactgacc atcatgggca
     2521 caggtggact gcgcgatttc gttctcgtgg tgcgggaaca tcaggtctga accgccgccg
     2581 tggatatcaa agtggttacc cagctgcttg cagttcatgg ccgaacattc aatgtgccag
     2641 ccaggacgac ccgcgcccca cggagacggc cagctcggtt cgccctcttt cgacatcttc
     2701 cacagaacga agtccatcgg gttgcgtttg tcatcaacca cgtcaacgcg cgcgccagcc
     2761 tgcagctggt cgagatcctg acgcgacagc acgccataag tcggatcggt cgggacgtcg
     2821 aacatcacgt cgccgttgtc agccacataa gcgtgacctt tggcgatcag ttgttcagtg
     2881 agttcaataa tttctgcgat atggtgcgtc gcgcgcggct ccatatccgg gcgcagaatg
     2941 ttcaaagcat caaaatcttt gtgcatttcg gcgatcatgc gatccaccag cgccacaaag
     3001 ctttcgccat tttcattggc gcgtttgatg attttgtcgt cgatatcggt aatgttgcgc
     3061 acatacttca gcttatagcc gaggaaacgc agatagcgcg caaccacgtc aaaagcaaca
     3121 aaggtacgcc cgtgaccgat atgacagaga tcgtaaacgg tgattccaca cacgtacatg
     3181 ccgacttccc cggcgtgaat aggcttaaat tcctcttttt ggcgtgtcag agtattgaag
     3241 atttttagca tcgaagattc cgtttagaca tgtgtgggta attgagttgc gtataatacc
     3301 catatttccc gcgcgaatca gcatacattg cgtgatgatc cgatcgtgcg gttatgctat
     3361 aacaccaccc tatatatgac ccgaaccggg ttgaagcacc aatcaaacgg aacaggatgc
     3421 aaaaatggtt actttccaca ccaatcacgg cgatattgtc atcaaaactt ttgacgataa
     3481 agcacctgaa acagttaaaa acttcctgga ctactgccgc gaaggttttt acaacaacac
     3541 cattttccac cgtgttatca acggctttat gattcagggc ggcggttttg aaccgggcat
     3601 gaaacaaaaa gccaccaaag aaccgatcaa aaacgaagcc aacaacggtc tgaaaaatac
     3661 ccgtggtacg ctggcaatgg cccgtactca ggctccgcac tctgcaactg cacagttctt
     3721 catcaacgtg gttgataacg acttcctgaa cttctctggc gaaagcctgc aaggttgggg
     3781 ctactgcgtg tttgctgaag tggttgaagg catggacgtg gtagacaaaa tcaaaggtgt
     3841 tgcaaccggt cgtagcggta tgcaccagga cgtgccaaaa gaagacgtta tcattgaaag
     3901 cgtgaccgtt agcgagtaat cgtggcgaca ctctttattg cagatcttca tctctgcgtg
     3961 gaagaaccgg cgatcaccgc cggttttctg cgttttttag cgggggaagc tcgcaaggcc
     4021 gacgcgctgt atattcttgg cgatctgttt gaagcgtgga ttggcgacga cgatcccaat
     4081 ccactccatc gccagatggc ggcagcgatc aaagcggtgt ccgattccgg cgttccctgt
     4141 tatttcattc atggcaaccg tgattttctg ctcggcaaac gctttgcccg tgaaagtggc
     4201 atgacgttat tgccggaaga aaaggtgctc gaactttatg gccgccgggt gttgattatg
     4261 catggcgaca cgctgtgcac cgatgacgcg ggttatcagg cttttcgcgc caaagtccac
     4321 aaaccctggc tgcaaatgct attcctcgcc ctgccgttgt ttgtgcgcaa acgcattgcc
     4381 gcgcgaatgc gcgcgaacag caaagaagcc aacagcagta aatcgctggc gatcatggac
     4441 gttaaccaaa acgcagtggt cagtgcgatg gaaaaacatc aggtgcaatg gctgatccac
     4501 gggcataccc atcgcccggc ggtgcatgaa cttatcgcca accagcaacc tgcttttcgc
     4561 gtggtactgg gtgcctggca tacggaaggt tcgatggtga aagtcacggc ggatgacgtt
     4621 gagctgattc attttccgtt ttaaaaaaac cacaactttg ctgatttcac agccacgcaa
     4681 ccgttttcct tgctctcttt ccgtgctatt ctctgtgccc tctaaagccg agagttgtgc
     4741 accacaggag ttttaagacg catgtcttcc cgcaataatc cggcgcgtgt cgccatcgtg
     4801 atggggtcca aaagcgactg ggctaccatg cagttcgccg ccgaaatctt cgaaatcctg
     4861 aatgtcccgc accacgttga agtggtttct gctcaccgca cccccgataa actgttcagc
     4921 ttcgccgaaa gcgccgaaga gaacggttat caggtgatta ttgcgggcgc aggtggcgca
     4981 gcgcacctgc caggcatgat tgccgccaaa acgctggtgc cggtgctggg cgtgccagta
     5041 cagagcgccg cactgagcgg tgtcgatagc ctctactcca tcgtacaaat gccgcgcggc
     5101 attccggtgg gtacgctggc gattggtaaa gctggcgcgg caaacgcggc attactggca
     5161 gcacaaattc tcgcgactca cgataaagag ctacaccagc gtctgaatga ctggcgcaaa
     5221 gcccagaccg acgaagtgct ggaaaatccg gacccgcgag gtgcggcatg aaacaggttt
     5281 gcgtcctcgg taacgggcag ttaggccgta tgctgcgtca ggcaggcgaa ccgttaggca
     5341 ttgctgtctg gccggtcggg ctggacgctg aaccggcggc ggtgcctttt caacaaagcg
     5401 tgattaccgc tgagatcgaa cgctggccgg aaaccgtatt aacccgcgag ctggcgcgtc
     5461 atccggcctt tgtgaaccgc gatgtgttcc cgattattgc tgaccgtctg actcagaagc
     5521 agcttttcga taagctccac ctgccgaccg cgccgtggca gttacttgcc gatcgcagcg
     5581 agtggcctgc ggtgtttgat cgtttaggtg aactggcgat tgttaagcgt cgcactggtg
     5641 gctatgacgg tcgcggtcaa tggcgtttac gcgccaatga aaccgaacag ttaccggcag
     5701 agtgttacgg cgaatgtatt gtcgagcagg gcattaactt ctctggtgaa gtgtcgctgg
     5761 ttggcgcgcg cggctttgat ggcagcaccg tgttttatcc gctgacgcat aacctgcatc
     5821 aggacggtat tttgcgcacc agcgtcgctt ttccgcaggc caacgcacag cagcaggcgc
     5881 aagccgaaga gatgctgtcg gcgattatgc aggagctggg ctatatgggc gtgatggcga
     5941 tggagtgttt tgtcaccccg caaggtctgc tgatcaacga actggctccg cgtgtgcata
     6001 acagcggtca ctggacacaa aacggtgcca gcatcagcca gtttgagctg catctgcggg
     6061 cgattaccga tctgccgtta ccgcaaccag tagtgaataa tccgtcggtg atgatcaatc
     6121 tgattggtag cgatgcgaat tatgactggc tgaaattgcc gctggtgcat ctgcactggt
     6181 acgacaaaga agtccgtccg gggcgtaaag tggggcatct gaatttgacc gacagcgaca
     6241 catcgcgtct gactgcgacg ctggaagcct taatcccgct gctgccgcca gagtatgcca
     6301 gcggcgtgat ttgggcgcag agtaagttca gttaagcagg tgctcatttg attgccggat
     6361 gcggcgtaaa cgccttatcc ggcttaccgc tccggtaccc attgtaggcc tgataagacg
     6421 cgtcaagcgt cgaatcaggc atggtgcacc gattgccgga tgctctcatc actacagcga
     6481 aatacaggtc cccgcttcgc ccgccagcgt ctcttcaatt cgcgataacg ccccaatcca
     6541 cgcgggttta ctacggcttc tgacataacc actcaccgcc gttaccttcg gccccatcga
     6601 accatcggct ttggcaaatg gcgctaactc atccggtgtg gcatggcgaa tggcacgttg
     6661 ctgcggcgtt ccccagtttt catataccgc atcagcatcg gtgaggatca ccagtccatc
     6721 ggcattaatc tgctcggcga gcaacgcagt ggcgagatct ttatcaatca ccgcttcact
     6781 ccctgcccca tcttccgtca caggcacacc gccgccgcca ctgcaaatca ccacatgccc
     6841 ctctttgagc aacaactcga tggcttcgct gtcgagaatt ttacgcggtt gcggagacgc
     6901 caccacccgg cgcaaatatt taccatcacg tttcatctgc cagccgtaag ccgcttccag
     6961 tgcctcttgt tcttctggct gataaaccgg accaataaat ttctctggct gcaaaaacgc
     7021 cggatcatca ggcgaaacct caatgcgcgt cagcaccgtc gtaacaggcg gtatctgcgg
     7081 ctgtgcgctc aagctctgcg ccagcatata gcctcatccc ctggctttcc gccaccagca
     7141 catccagcgg atacggttct acctctttcc acgccagatt ctgtaacgcc agcagcccca
     7201 cctgcggccc gttgccgtga acaatcgcca gccgataaga acgggccagg cgtgccagcg
     7261 cgggtacagc actggcgata ttgcgatatt gattttccgc cgtcagcgcc tcaccgcgct
     7321 ggagtaaggc gttgccccca agagctacaa ccagtgtttt catggttttc cttgtaataa
     7381 ttgttggcca agccagaacc ccagcagcgt atctgcccct gacgtatgcc ccagcgccag
     7441 cagcgaatca atcgcaacag cggtacgttt cgggcaactc agagcatgga caaagtgcag
     7501 gagtggcgag gcgaaatatc cttgcgcggc ataacgtaaa taactgacgc tcaccgctgt
     7561 ggtaacgagt tgaagattgt cggaacaggc aaaaaacggg cgaccggcgc gcgcatctaa
     7621 agcgccataa taccaagccg ccagcagcat tccgctcaac gtgtcatcat gacttggcgt
     7681 taatccgggg cctttaccca gccagtgccg ccagtcggtc ttaacgccat tgagcgcggc
     7741 ctgaaaacag tgacgaaact ggcgtaattc agcggtcagc ggatcgcttg ccgccatcgc
     7801 cagtggtccg aaaagtccgg tttcctccgc gcgttgcatc catgcagctg caagcggttg
     7861 aggatgcgaa ggcggcgtaa tacgcagcaa acaataacgc tgtggctgtt taaccgtgaa
     7921 acgcccgagg cgaatccctt gagccacaac ctgtggtcgt tcattgccgc ataatccacc
     7981 gcataacgca tcgaattgcg cgcggcgaag cacccatcct ccggggccga aaccactacc
     8041 ctgacgatgc agcgttaaca gttcgccgct ttccgtcatc aggttaatcg cccgccgcca
     8101 cactcccgct aaccgccagg actggcgata attcggtgcg ctactgctgg caagcagagg
     8161 atggatgatc gtcattgcgc gttcctcaac caatccccat gctttcagcc agtgcttcca
     8221 gcgcctgttc aaagcacgcc agcggtgccc gcacggtgcc tgcgccaatc tgcccgatcc
     8281 ccgcctcttt atgggcgata ccggtattga tgagtggcgt aatgccggtt tctaccacgc
     8341 gacgaatatc cagccccagg cacgcgccct gaaaatccca gcctgggatc tgcaactgca
     8401 tattgcgttc aaggtaaatt tccgccatct cttcagatac cgccctggcc gcttccatgc
     8461 cacccgcacc gacaaagcgc gttacgccag gcgctgcgat cattgccgca cctccgatac
     8521 caaaggtttc ggtaatcgcg ctatcgccca tatccgggtt cgcctgctcc tgcgagaagc
     8581 cggtgaaaaa cagaccttgc ggagtgttta caggcgcagt aaaccagcgt tcacccagcc
     8641 cgcttacccg aatcccgaac atattgccgt tgcgggtcat agccgtaacg atgctgcctg
     8701 cgcggatcat cgcgccagca tccatcgccg ccttgcagta ggccatcgcg aggttgagga
     8761 agaactgatc ggtcacgctg aggaaatcga tcacttccgc aatgtgctgt ttatcatgat
     8821 cgaggcgagc aatttgtggg gccagcgtac gcattaacag tgctgaggaa gcaatattgc
     8881 gttgatggaa ctcatcgccc atcgtaatgc cctgcgccat catcgccgtg agatcgatac
     8941 cgcgctccat gcgccccagc gccgcgctta atactggcat taacacatcg cgcatccagc
     9001 gatggcgagt caggacatct tcgccgtaag cgccaaaacg catcactttg ccgatacctt
     9061 cgttgaggtt gcagtacgcc cggttgccgt cggtcacgtt ctcgaccacc agcatcggca
     9121 tactggcaga agtaatgccg cccattggcc cgacggcatt cacatggtga caaggaatga
     9181 agttcacttc cccctgctcc agcatcgcca gtgcctgcgc ttcatctttc gcccagcctt
     9241 cgaacagaca tccgcccacg cacgcccctt tcatgggtcc ggtcatctcc tgccagcgca
     9301 ttggcggccc ggcgtgaagc agtgttttgc cctcgtttag ttcgctgata agtgaaaaag
     9361 ccggttgcac atccagccag tgtggacgag cacgacgaat ttgttcgata accgcagcat
     9421 tggcttgcgc cactgatgta aacatgggaa ccccttattg caaacgttct aataaacgag
     9481 ccagtttttt attgccgccg gcgactggcg accattggta atgcacaacc ggtttgctgg
     9541 cgctttgtag ctccagcgca aagctgcgta atccgatgtt aatcacggcg acgttttcca
     9601 gtaatgacgg tgtatgttgc tgtgcggcag gcgagagcgg ataaattaac gctgccgcca
     9661 gcaaggtggc ttccggcagc gaactcacta ccgcgatccc cgcatcttcc agcgtggcga
     9721 tttgctgcga gcggcattgc gggtcacgtt cagtgcctgt caccgtggca atggcataca
     9781 gtggttgatt atctgaacgc gcggcacagg ctttttgcta ggcgcttacc agcgaggcgg
     9841 caggatcggc agtcgcaccg aagccaatca cgacatcaag tagcaatacg cgcacttgtg
     9901 gtttagcgcc gagatcggca attaactggt tgcgtaaggc tgggtcgatc atcggatggg
     9961 gacgcccgac ggtgtagaaa tcatcgccga ggtcaataat ctggtgacca tcggcgtcga
    10021 gcatcatgcc gtgatgatgg gtatcgtcgg cttccacgcc aaggtgtcca gcaagtaatc
    10081 ccgccgcttc ggcagccagc gtaccgccgg tatacaaacc gcaaataaat ccgctgctga
    10141 caggcgctat tgcgttacgt cgcgccgtga cgcgtgaaag caggcaagcc aggcgtgcgg
    10201 cctcatccag cgaggaggca aaccagacat tctcgtcgcg ggccaccgcc ggggtataac
    10261 ctaaaaacag cgccaccatc ggtttgccgg ttgctttcat ggcattaaca attttcagac
    10321 gcacagcttc
//
LOCUS       DAJVUP010000152        10213 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.152, whole genome shotgun sequence.
ACCESSION   DAJVUP010000152 DAJVUP010000000
VERSION     DAJVUP010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10213
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.152"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(497..859)
                     /locus_tag="OQQ75_003421"
     CDS             complement(497..859)
                     /locus_tag="OQQ75_003421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibL family ribosome-associated protein"
                     /protein_id="HCS1977626.1"
                     /translation="MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT
                     LEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTA
                     LGREMGLQEMAGFSKTAF"
     gene            1144..1353
                     /locus_tag="OQQ75_003422"
     CDS             1144..1353
                     /locus_tag="OQQ75_003422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977627.1"
                     /translation="MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPD
                     ESVPLYLQRLEYYRRLYRPKQVEGQ"
     gene            complement(1365..1952)
                     /gene="mtlR"
                     /locus_tag="OQQ75_003423"
     CDS             complement(1365..1952)
                     /gene="mtlR"
                     /locus_tag="OQQ75_003423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol operon repressor MtlR"
                     /protein_id="HCS1977628.1"
                     /translation="MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRS
                     FLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI
                     NRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSL
                     YAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK"
     gene            complement(1952..3100)
                     /gene="mtlD"
                     /locus_tag="OQQ75_003424"
     CDS             complement(1952..3100)
                     /gene="mtlD"
                     /locus_tag="OQQ75_003424"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709374.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1977629.1"
                     /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH
                     SYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKG
                     LVKRKEQGNESPLNIIACENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRI
                     VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPSMELTDNLMAFVERKLFTLNT
                     GHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK
                     ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHF
                     RSEDDPQAQELAALIADKGPQAALAQISGLDANSEVVSEAVTAYKAMQ"
     gene            complement(3330..5243)
                     /gene="mtlA"
                     /locus_tag="OQQ75_003425"
     CDS             complement(3330..5243)
                     /gene="mtlA"
                     /locus_tag="OQQ75_003425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HCS1977630.1"
                     /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLT
                     NETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMI
                     AGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKM
                     LAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIE
                     ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG
                     GMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILL
                     KTSKVKEEDDIEAATRRMQDMKAESKGTSPLSAGDVTNDLSHVRKIIVACDAGMGSSA
                     MGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT
                     NFLDSGLYTSLTERLVAAQRHTENEVKVKDSLKDSFDDSSANLFKLGAENIFLGRKAA
                     TKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT
                     GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT
                     SVDEVLELLAGRK"
     gene            5780..6142
                     /locus_tag="OQQ75_003426"
     CDS             5780..6142
                     /locus_tag="OQQ75_003426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3302 domain-containing protein"
                     /protein_id="HCS1977631.1"
                     /translation="MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAI
                     HTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIASLSDRISRL
                     EHQLAAEKKTDYSTFPEI"
     gene            6145..7281
                     /locus_tag="OQQ75_003427"
     CDS             6145..7281
                     /locus_tag="OQQ75_003427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1977632.1"
                     /translation="MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLI
                     LLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQAR
                     VDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
                     ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLE
                     QTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGD
                     DAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPGTDGVQGTIELDPND
                     DIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH"
     gene            complement(7741..8178)
                     /locus_tag="OQQ75_003428"
     CDS             complement(7741..8178)
                     /locus_tag="OQQ75_003428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977633.1"
                     /translation="MADKAILWALISASTKEERKACSLSYFACKAAEAELGLAYMAAN
                     DNKEFLTSLSNIMRYKIDAGLSESYTCYLLSKGKIIRPYLKNLNPLQLAADCIETVNK
                     IKDKNKKIIDINSVNICSDDKNIKLRVNSTIMAIDDSIKCIDE"
     gene            complement(8886..9347)
                     /locus_tag="OQQ75_003429"
     CDS             complement(8886..9347)
                     /locus_tag="OQQ75_003429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HCS1977634.1"
                     /translation="MKACLLLFFYFSLIDQLHGADVKIKENESVMGSTAMTYDLSEEK
                     LMKLKYKSQHGDSEASFRLYQYYCFTKNNIDKQLRFLERSASQGNVTAQFNYGVFLSD
                     TNPTLSEYYNLNRAIYWMEFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP"
     gene            complement(9359..>10213)
                     /locus_tag="OQQ75_003430"
     CDS             complement(9359..>10213)
                     /locus_tag="OQQ75_003430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1977635.1"
                     /translation="VAQMQSQMDPVYTPARKIHLYHCDHRGLPLALISTEGATAWCAE
                     YDEWSNLLSDENPHHLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKG
                     GWNFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIES
                     ATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTSKGQNSFASQLAKELHTNVIGPDT
                     LWTWWGRGTNGKLKMDTVLTAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQGT
                     PEKPSDIR"
BASE COUNT         2612 a         2424 c         2326 g         2851 t
ORIGIN      
        1 tgtccattgt attattggtg atttatgttg ctttacatta atgacagtga tgtgtgtcga
       61 ttaaatattg ttttaagcat tcatcataaa aatgtatcat tcgtttcaaa agatgtctgt
      121 gtttgtatga atatattatt ttcgtggatt ctaatgatga ttattaataa atgtcaaata
      181 tgaaagaaac catgtctggg aaaaaattta cagataattt attgtatgaa tatgatgatt
      241 aaaatttcac aattaaatcc gaaaaaaaga gacgtaactg cttgttaatt aataaatgat
      301 atcttctata tatttttatt gtttataggt ggctatttcg gtaaaaatgc attttcagaa
      361 tatcaaccag cggtaaatcg acgtaaaggg agtgaattgt ttggtaatta ggcgagtaga
      421 caggagagtc cccgcattga ccagctaagg caagccagat gcgggttgat atgatcgaac
      481 cagtcgtctg aggcgcttaa aacgcagtct tagagaatcc agccatctcc tgcaggccca
      541 tttcacggcc cagcgcggtc attgggtgca caaccaccag tccgcgaaca cttttcttca
      601 gcttgcccat atcagcctgc tcttttttgg taattgcgcg ctgaaacggc atcttcatca
      661 gcttctgtgc ttctttactc agtttttggc tatgaacctc acgcaggcga gcaatttctg
      721 cttccagcgt ggctttctct ttttccagct cggcatattt gtctgcggct tcaaccagcg
      781 acagatcggc ctgctggtgg cggatggcgt ccaggcgatc gctgagacgt ttgatttcgt
      841 ttttttcgac ttctttcatg tgatggcttc tgataaagat aaatttatag cccctagtat
      901 gcgcgaccag gtgctttgtt cacaactgat gacattgtaa tagttctgca acgtaatcat
      961 taacatgctc aaaaactacg caattcgttg attaattaag aaatctatag aaaaaagata
     1021 ataaacagca gcggatgatt attgaggatt cagcacgttt tccttaatgt catctttacc
     1081 gggaacctaa actaaaattg gtggccgcgc attcccggcg cggggtaata cggagatatc
     1141 atcatgggca aattaggtga aaacgttccg cttcttatcg ataaagccgt agatttcatg
     1201 gcatcaagcc aggcgttccg ggagtatctg aaaaaacttc ctccccgtaa cgcgattccg
     1261 tccggaatac ccgatgaaag cgtgccgtta tatctacaac gtctggagta ttatcgtcgg
     1321 ctttatcggc cgaagcaggt agaggggcag taagcagacg ttgcttactt ttgaaaggct
     1381 ttttttaagc tgattttgga aatcagctca gtcagtgaaa ggaccattgt tgatcgcaca
     1441 gcctgttgat agcgctgaat ttgcattgca tacaaactgg agtctgctgg ttcaaactgt
     1501 ggcggcggtg gtaacgccgc cacgcagtgc agttcaccaa agggtccaag gatttcgtcg
     1561 tcggtaaagg cgtactcgtt gccgtcgtga tttagctctt cacgcaatgc catcagcagt
     1621 tccgcatctt cgtattcctg gcggttaatg acgcccaacc cgtaaatgag ttttaaacgc
     1681 acagaaagat cgcccagcgg accgtcgccg tcgagtaacg gttctacagc atacttcacc
     1741 gcgtaatcgt ctttgcggaa tacctgaagc accagaagat ttaccgcctc ggtcaaaagc
     1801 tcgacggcgg tgatcagaaa gcttcgcacg gttttgccag cattcagacg ctcaagcaca
     1861 cggttttcaa aggcctgggt ttgttccatt gttgcctgca tatctgacaa tctgttattc
     1921 gggcgcaggg tgtcctgcgc ctggtccacc attattgcat tgctttataa gcggttaccg
     1981 cctcggatac aacctcactg ttggcatcaa gaccggaaat ctgtgccagc gccgcctgcg
     2041 gacctttgtc agcgatcagt gctgccagtt cctgagcctg cggatcatct tcactgcgga
     2101 agtgcattgc accagcaatc ccctgaatca gattcttgtg cggaaggctg tattccagcg
     2161 taccgagcag tggcttgatc agacggtcgc cagcactcag tttacgcagc ggctgacggc
     2221 ctacgcgctc tacatcatct ttcagatacg ggttctcaaa acgaccgagg attttctgga
     2281 tgtacgccgc atgtttgtct gcgtcaaagc cgtagcgctt gatcagtacc gcaccacttt
     2341 cttccatcgc accttttacc accgcgcgga ttttctcgtc gagaatagcg tcacgaatgg
     2401 tctgatgacc ggccagtttt ccgaggtacg cggttatagc atgacccgtg ttcagggtga
     2461 agagtttacg ttcgacaaat gccatcaggt tgtcggttaa ctccatgctt gggatgttcg
     2521 gcagtgcgcc tttgaactgc gttttatcga caatccattc gctgaaagtt tctaccgtca
     2581 cttccagcgg atcgttagtt gccgaagccg aaggcggtac gatgcggtca acggcggaat
     2641 cgacaaagcc aacgtgttct tctacccacg ctttggcgtc ttccggcagg gcgttcatca
     2701 catggccttt cagctgcgtg gtaccgcgta ccatgttttc acaggcgatg atgttcagcg
     2761 gggattcatt accttgttct ttgcgtttca ccagcccttt ggcgatagcc ggagcaatac
     2821 gttccagcac aaccgggcca acggcggtag tgactaaatc gacctgagca atcagatcaa
     2881 cgacatcatc accaatgctg ctgacagcat tgacgccgga aacggtatct acctgctcgg
     2941 tttcaccaac cacatgaacc tgatagctat gacgggcatt cagggcatca agtaccacct
     3001 gattgacatc ggcaaacgtc agttggatac ccgcgtctgc cagcagttta ccgataaagc
     3061 cacgaccgat attacctgcg ccaaaatgta atgctttcat agtattaacc ttcatcaatg
     3121 tttttacccg agagggctgg ggtgaggctt ttccctcacc caaaccctct ccgtgaggag
     3181 aggggcagcg ccggatgcgg cgtaagcgcc ttatccggcc tacaagaacg tgcaaattca
     3241 acaaatcgtg atgcatcctg taggcctgat aagcgtagcg catcaggcaa ttaaccccac
     3301 cttctccatg tggagagggt gggattggat tacttacgac ctgccaacag ttccagcact
     3361 tcatccacgc tggtggtgtg tgccagacgc tcgatgacgg actcatcatc cagtgcattg
     3421 gtcaggctgg tgataacctg aatgtgctcg ttgttacggg ctgcaatacc aatcaccaga
     3481 cgggcaatgt catcttcctc ttcaccgaag cgcacgcctt ccgggtactg gcagaacacc
     3541 acgcccgttt tcagtacgcg atctttcgct tcaaccgtac cgtgtggcac cgcgatagac
     3601 tcacccagat aagtcggggt cagtttttca cgatccagca tcgcctgaac gtattccggc
     3661 tcaacgtaac cgcctttcac cagctgctcg ccagcaaaac gaatcgcttc ttctttggtt
     3721 gctgctttgc gaccgaggaa gatgttctcc gcgcccagtt tgaacaggtt agcactggaa
     3781 tcgtcaaagc tgtctttcag actgtctttc actttcactt cgttttcagt atggcgctgg
     3841 gcagcaacca gacgttcggt taggctggtg tacaggccgc tgtcgaggaa gttggtcagc
     3901 gaaatatgct gtgcctgcgg aacctggcgc atagcgcgtt cggtcaggtc acggtgagtg
     3961 atgacgaggt ccacatctgg cggcaggttg ttgatcgcgc tgttagtgac cgaaatctgc
     4021 gacagacctg catcctgaat tttcttacgc agcacgcctg cgcccatcgc acttgaaccc
     4081 ataccggcat cacaggcaac gatgatttta cgtacgtggc tcaggtcgtt agtcacatcg
     4141 cccgcagaca gcggagatgt gcctttagac tcagctttca tgtcctgcat acgacgagtt
     4201 gctgcttcaa tatcatcttc ttctttcact ttgctggttt tcagcaaaat agcagagaca
     4261 acgaaggaga cagccatcgc cgcacacaca cccgcgatgt tagcgaaata agcccctttt
     4321 ggtgtcatcg ccagtacagc aaggatagaa cccggagatg ccggagaaac cagaccaccg
     4381 cccaggatag tcagcgtgaa cacgccagtc ataccgccga ggatgactgc gaggatcaga
     4441 cgcggattca tcagcacata cgggaagtag atttcgtgga taccacccag gaagtggatg
     4501 attgccgcac cgcccgcaga ctgtttagcg ctaccacgac caaagaacat gtacgccagc
     4561 agcacgccca tacctggacc tgggttagct tcaatcagga agaagattga tttacccagt
     4621 tcatgggact gctgaatacc cagcggcgag aagataccgt ggttaatggc gttgttgagg
     4681 aacaggattt tcgccggttc aacaaagata gacgccagcg gcagcatgtc atggacaacc
     4741 atgaagttaa cgcccgcagc cagcattttg gacagggctt caacaatcgg gccaatgccg
     4801 aggaatgcca gaatagcgag gatcatcccg atgatgcctg cggagaagtt attcaccagc
     4861 atctcaaaac cggatttgat cttaccgtct acccagcggt cgaagtgctt aatgcaccag
     4921 ccgcccagcg gacctgcaat catagaaccg aggaacatcg gcatgtctgc gccgacgata
     4981 acgcccatgg tggtgatggc accgactacg ccgccacgtt cgccgcctac cagcttacca
     5041 ccggtataac cgatcagcag cggcaggaga taagtgatca tcggcccgac cagcttcgcc
     5101 agcgtctcgt tcgttaacca ccctgttgga ataaataacg cggtgatgat accccacgcg
     5161 ataaacgcgc cgatatttgg catcaccatg ttgctgagga aacgaccaaa gctttgcact
     5221 ttgatcttaa tatcggatga cataaaaaca ccccttctta tgtttgctgt cgcgcaggct
     5281 ggaagcccga ggttttttgt taatgtggcg gcagaggtag ccggaccttg tagatactgc
     5341 gaaatctggc actgaatcgg ttaactgtcc agtcgacggc cttttgtgtg atattaatca
     5401 cataaatata ggaggtagag aggtaattga cgtgacgttc atcacaaaac gcttgtgtaa
     5461 aaaagcaaca aggcggcgat tttcgctaaa aatggcattt aaatgtgagt agtatcacat
     5521 ttttgttttg atggtttgtt gaatctttgt gatctgaatc acaagatatt ttcttacggc
     5581 gttcacctga tgtgatctac agcatgttat gccttcgtca tacaatcgtt atgtaactaa
     5641 gcaactcatc acctctaaaa attattcttt ggtgttatgg cgagaatcgc gaacccggat
     5701 tattgtcaaa atatcagcct gactcccttc tggctgccag cccaaaaaca acactgataa
     5761 acgtgaatcc gaggcagata tgtttctaaa ctatttcgcg ttgggagtgc tgatcttcgt
     5821 ctttctggtg attttttatg gaatcatcgc gatacatgac atcccttatc tgattgccaa
     5881 aaagcgcaat cacccccatg ccgacgctat tcatacggcg ggctgggtga gcctgtttac
     5941 tctgcatgtt atctggccgt ttctgtggat ctgggcgacg ctctatcaac cggagcgtgg
     6001 ctggggtatg cagtcacatg ttgcgtcgca ggagaaagcg actgacccgg aaatcgcctc
     6061 actttctgac cgaatttccc ggctggagca tcaactcgcc gccgagaaaa agactgacta
     6121 ttccacgttc ccggagatct aattatggat ctattgattg ttttaactta cgtggcgctg
     6181 gcgtgggcgg tctttaaaat cttccgcatt ccggtaaatc agtggacgct ggcgacggcg
     6241 gcgctgggag gcgtgtttct ggtgagtggt ttgattttgt tgatgaacta caaccaccct
     6301 tacactttta ccgcgcaaaa ggcagtgata gcgatcccta tcacgccaca ggtgacggga
     6361 attgttactg aagtcactga caagaataat cagcttattc aaaagggcga ggtgcttttt
     6421 aagctcgacc cggttcgtta ccaggcgcga gttgacagac ttcaggctga cctgatgacg
     6481 gcgacgcata atataaagac gctgcgtgcg cagctcactg aagcgcaggc caacaccacc
     6541 caggtttcag cggagcgcga ccgtctgttt aaaaattatc aacgttactt gaaaggcagc
     6601 caggcggcgg tgaatccgtt ctcggaacgt gacatcgacg atgcgcggca aaatttcctc
     6661 gcgcaggatg cgctggtgaa aggctcggtg gcggagcagg cgcagatcca gagccagctc
     6721 gacagtatgg ttaacggcga gcaatcgcag attgtgagct taagagcgca acttactgaa
     6781 gcaaaatata accttgagca gactgtcatt cgcgcgccga gcaatggcta cgttactcag
     6841 gtactgatcc gcccaggtac atacgcagct gccttgccgc tgcgtccggt gatggtcttc
     6901 atccccgagc aaaaacggca aattgtcgcc caatttcggc aaaactcgct gttacgtctg
     6961 aaacccggcg atgatgcgga agtggtgttt aacgcgctac ctgggcaggt gtttcacggc
     7021 aaactgacta gtattttacc tgtcgtgcca ggcggttctt atcaggcgca ggggggattg
     7081 caatcattaa cggtcgtgcc cggcacggac ggtgtgcagg gaaccattga actggaccct
     7141 aacgatgata tcgatgcctt acccgacggc atctacgccc aggtggcggt ttactccgac
     7201 catttcagcc atgtttcggt gatgcggaaa gtgctgctaa gaatgaccag ctggatgcat
     7261 tatctttatt tggatcattg agggggaggg gggagattat ggaactttgc tccttgtaag
     7321 gactaattat ttttgcatat tacttcatta gctgcgatga tttttcttta atattcatta
     7381 tgttaataag ttctggatga gtgtgctctc attggatttt ttatccgtct tgttctgccg
     7441 caggatgaga ctatacatcg tcgagatcgc aatgatgata tgagttgttc ctcctgcgac
     7501 ggctctaatc aaaaaagagc aggagtgctt ttccatctat tgcgatgatg gctttattat
     7561 ctgaaggatg acagtcacat ttaaaaaata tttaatctat agatcacaat gtagggtcat
     7621 ggaatatatg tatacaacta ttttcttctt cacttttaat tatcgtattc attataaaac
     7681 taagttaaaa aaactcctgg agagtgagtt attaatatat ttttaaataa aattaagtta
     7741 tcattcatcg atgcatttta tagaatcatc aatggccata atagtactat taactctcaa
     7801 ttttatattt ttatcatcac tacaaatatt aactgaattt atatcaatga tttttttatt
     7861 cttatctttt attttattta ctgtttcaat gcaatcagcg gcaagttgga gtggatttag
     7921 atttttcaga tatggtctta tgatctttcc cttacttaat aaatagcatg tataggattc
     7981 ggaaagtcca gcatctattt tgtacctcat tatattagat aaggatgtga gaaattcctt
     8041 gttatcattc gcagccatat atgccagtcc gagttcagcc tctgcggcct tacaggcaaa
     8101 atagcttagt gaacacgctt ttcgttcctc tttagtactg gctgatatta gtgcccataa
     8161 tattgctttg tctgccaaat ctaactctct ctgaaattgt cttgcagtaa ctgcactcgc
     8221 agaaatagag aaaaaaatac aattgttaat aaccttgcca tattttttta gtccgtaact
     8281 gttaatgtgc tatctggctc tgaaaatatt aactcattta atttttgcat gtcattagat
     8341 aaaccagtta tacaaccctc ggaacagaat cgaggtccta aagacggacc aaaagcgttt
     8401 aaacaactat gtattgaaaa tccattgcga ttataagttc ctgtattaac tgacggtact
     8461 aatcgtatgc cgtcaggttt tctattgctt gctcccgggt cattaacatt ccaactccat
     8521 aggccttgag gtattggcca tctatttata aatgtgtaca acggggatta tttttacatt
     8581 gcatattatt accagaagcg actggaatac taagcacatc ataaaaatta tcatcacatg
     8641 gtatatctga aacacacgaa agcataccta aagttatgct gtataaacag gtggctaatc
     8701 ccaaggggat cgattccaga aatcgggttc aacggatact gataaaaatt ccacctacct
     8761 tccagcccaa tcggagcctg agtgttatac cgcccctgct gcggttaatg ttaccgataa
     8821 tagttatagt acagccctga ttcatcatca tactactgct gcggcagtct gatgaactat
     8881 tgcttttacg gattctcctt attcttcctt ctatccattc gctttagctt tttgagctct
     8941 tgaagtttgc tctttgcatc aatattaccg ttatttacag cgaattccat ccaataaata
     9001 gctctattca aattataata ttctgataat gttggatttg tatctgataa aaagacccca
     9061 taattaaact gcgctgtaac attcccctga gatgctgatc tttccaagaa tcgcaattgt
     9121 ttatcaatat tatttttagt aaagcagtaa tattgatata gtcgaaatga tgcctctgaa
     9181 tcaccatgtt gtgatttata cttcagtttc atcagctttt cttcacttaa atcataggtc
     9241 attgctgtag atcccatcac actttcgttt tcttttattt tcacatcagc accatgcaat
     9301 tgatcaataa gagaaaaata aaaaaatagt aacaagcatg ctttcataca tctacaacct
     9361 atcttatatc actgggtttt tctggcgtac cttgcatatt agaaatgggg tgcccagatg
     9421 gcccatatgt tatccaatta ccaaggtctt ttgttgttat agccattaga tccttatttg
     9481 aattaaggtt cgttggtgct gttagcactg tatccatttt taacttacca ttagttcctc
     9541 gcccccacca cgtccatagc gtgtcaggtc ctattacatt tgtatgtaac tctttagcta
     9601 attggctagc aaatgaattt tgtcctttac ttgtattaca agaaaataac caaactgtca
     9661 tcccatcttt ataattccca tcaaatttaa ttagatatgc tagatcttta gctgtcatga
     9721 tactgcgcgt tgcggattca atagatgtgg gggtaccatg ccccccgatt gtgaaaacgc
     9781 ctgggatatt aatctcatca gctacagaat ggataagatc actttcgggg tataaattta
     9841 tatcaaccaa accttgcgga tctacattta tgaccggatt caacggatac tgataaaaat
     9901 tccatccccc cttcagccca atcggatcct gagtgatata ccgcccctgc agcgggtcat
     9961 aatagcggtg gcggttgtaa tacaggccgg actcctcatc atactgctga cccggcaggc
    10021 gaatgagctg ctgcagatga tgcgggttct catcactcag caggttgctc cattcatcat
    10081 attctgcgca ccacgctgtt gccccttccg tgctgatgag cgccagcggc aggccgcgat
    10141 ggtcgcagtg gtacaggtgg atttttcgcg ccggcgtgta caccgggtcc atctggcttt
    10201 gcatctgcgc cac
//
LOCUS       DAJVUP010000153        10117 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.153, whole genome shotgun sequence.
ACCESSION   DAJVUP010000153 DAJVUP010000000
VERSION     DAJVUP010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10117
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.153"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            205..357
                     /gene="hokA"
                     /locus_tag="OQQ75_003431"
     CDS             205..357
                     /gene="hokA"
                     /locus_tag="OQQ75_003431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokA"
                     /protein_id="HCS1977636.1"
                     /translation="MPQKYGLLSLIVICFTLLFFTWMVRDSLCELHIKQGRYELAAFL
                     ACNLKE"
     gene            complement(545..757)
                     /gene="cspA"
                     /locus_tag="OQQ75_003432"
     CDS             complement(545..757)
                     /gene="cspA"
                     /locus_tag="OQQ75_003432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone/antiterminator CspA"
                     /protein_id="HCS1977637.1"
                     /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS
                     LDEGQKVSFTIESGAKGPAAGNVTSL"
     gene            complement(1038..1328)
                     /locus_tag="OQQ75_003433"
     CDS             complement(1038..1328)
                     /locus_tag="OQQ75_003433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator"
                     /protein_id="HCS1977638.1"
                     /translation="MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKG
                     TGLKIDDFARVLGISVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME"
     gene            1761..2471
                     /locus_tag="OQQ75_003434"
     CDS             1761..2471
                     /locus_tag="OQQ75_003434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3053 domain-containing protein"
                     /protein_id="HCS1977639.1"
                     /translation="MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNT
                     VMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ
                     DYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQTDDLKPVFDQAFTKVVTTP
                     ADALQPLIPVAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLP
                     AQHQAFNQAWTTAVTATQ"
     gene            complement(2521..3495)
                     /gene="ghrB"
                     /locus_tag="OQQ75_003435"
     CDS             complement(2521..3495)
                     /gene="ghrB"
                     /locus_tag="OQQ75_003435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312465.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrB"
                     /protein_id="HCS1977640.1"
                     /translation="MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFA
                     EAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTET
                     VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMAL
                     AQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLF
                     GAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS
                     MANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD"
     gene            complement(3599..4258)
                     /locus_tag="OQQ75_003436"
     CDS             complement(3599..4258)
                     /locus_tag="OQQ75_003436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family lipoprotein"
                     /protein_id="HCS1977641.1"
                     /translation="MKKRVYLIAAVVSGALAVSGCTTTPYTGEREAGKSAIGAGLDSL
                     VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS
                     GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
                     NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP
                     L"
     gene            4411..6744
                     /gene="bisC"
                     /locus_tag="OQQ75_003437"
     CDS             4411..6744
                     /gene="bisC"
                     /locus_tag="OQQ75_003437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418007.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin sulfoxide reductase"
                     /protein_id="HCS1977642.1"
                     /translation="MANSSSRYSVLTAAHWGPMLVETDGETVFSSRGALATGMENSLQ
                     SAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQHKRIR
                     EAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV
                     GGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKL
                     ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYA
                     VFASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGE
                     QKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDK
                     IPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL
                     VVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDF
                     DVFAELSERWEKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQL
                     IEMPENPDSERFIRFADFCRDPQAHPLKTASGKIEIFSQRIADYAYPDCPGHPMWLEP
                     DEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALARGIQD
                     GDTVRLWNARGQILAGVVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDL
                     PSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS"
     gene            complement(6713..7153)
                     /locus_tag="OQQ75_003438"
     CDS             complement(6713..7153)
                     /locus_tag="OQQ75_003438"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1977643.1"
                     /translation="MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAY
                     LANAQNWVWEEDSKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLML
                     EVYQKNQPAINFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL"
     gene            complement(7150..7713)
                     /gene="tag"
                     /locus_tag="OQQ75_003439"
     CDS             complement(7150..7713)
                     /gene="tag"
                     /locus_tag="OQQ75_003439"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HCS1977644.1"
                     /translation="MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGL
                     SWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY
                     LQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTT
                     ICYSFMQACGLVNDHVVGCCCYPGNKP"
     gene            7871..8569
                     /locus_tag="OQQ75_003440"
     CDS             7871..8569
                     /locus_tag="OQQ75_003440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1977645.1"
                     /translation="MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGHS
                     TERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQ
                     VTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSSLGWRVDSRLGDLRPWAQI
                     SYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN
                     NSDYLYTMGVSARF"
     gene            8797..9999
                     /locus_tag="OQQ75_003441"
     CDS             8797..9999
                     /locus_tag="OQQ75_003441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1977646.1"
                     /translation="MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAP
                     VSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMML
                     WLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE
                     TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWM
                     LAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDK
                     IARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFG
                     LNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQ
                     KMLREAHI"
BASE COUNT         2427 a         2435 c         2592 g         2663 t
ORIGIN      
        1 ttttttagga ttatatcaag gagaagaaac aaacttatta agctagaata gctacgggtg
       61 cttgagactg tttgtctcag gtattcaccg aaaggcagac agagaaaagc cccacctgac
      121 tataaatcaa agtgaggcta ccctatgcct gaacaccata aggttagcct cttactcgtt
      181 ggaaatcaac acagggggct gggaatgccg caaaaatacg gattactttc attaatagtg
      241 atttgtttca cgcttttatt tttcacctgg atggtaagag attcactgtg tgaattgcat
      301 attaaacagg ggcgttatga gctggcggca tttttagcct gcaatttaaa agagtaagag
      361 tcttcggcgg gaaattattc ccgcctttct tacggcgttg cgcattctca ttgcacccac
      421 atttattctt cacaaaaata ataatagatt ttactacgcg atcgattatt tatttcctga
      481 aaaaaaataa aaaaaatccc cgccaaatgg cagggatctt agattctgtg cttttaagca
      541 gagattacag gctggttacg ttaccagctg ccgggccttt agcgccgctt tcgatggtga
      601 aggacacttt ctgaccttcg tccagagatt tgtaaccatc gttctggata gcagagaagt
      661 gtacgaacac atctttagag ccatcgtcag gagtgatgaa gccgaagcct ttgtcagcgt
      721 tgaaccattt tacgatacca gtcattttac cggacatagt gtattacctt taataattaa
      781 gtgtgccttt cggcgatatg gcgtgcttta cagattttga agcgttaaag gaatgtgcac
      841 tacgaggggt atcaacgata actcttgaag ggacttgcct tactacactg ctttaatggt
      901 ctgtacgtca aaccgttgat gtgcattaag ccacgcattg gcgggtgatg caacaattat
      961 ttttcatatt tatgattaat cggttggaaa acggtcctgt catcaggacc gtaaacagca
     1021 ataaagtgga taaaagtcta ttccatcaac tgcttactta atgccgggtt ggcttgaatc
     1081 aaacgcatca attttagttc ggcacttgaa ggcttcacgc gtctggattc ccattccttt
     1141 accatggcga ctgatatgcc caaaacccgg gcgaaatcat cgatttttaa ccctgtccct
     1201 tttcgtaact gctcaatttc ggtacaggac gttgttctgt gcgtcagggt aattttctgc
     1261 gtttcatctt taaaaacaat ctgttccagg ctgctcaaca gctcatgcat tggatcttta
     1321 tattccattg aaaactcctc aaatcacact gcgggatcgt gaattgcatc gaagctcatt
     1381 aagaatagtc gggaaaagca gacacagcgg ggtgaagtca gggcatgctc tggctatgat
     1441 tcgattcagc cagtcattta gcgtgactta tagccaccta acgatctgat aaatgccgat
     1501 atatctctta ccactcctgt tttgtaaaga tttcgaaaat ctaaagttct gcgaaggcgt
     1561 aaatctcggg ctacaaaaaa gcaacggcaa tatcattttt taacaatgaa acaacaaatt
     1621 aaccttgttt cattttctcc atgattttac caggaagatt acgtagaaag ggtatcctgc
     1681 aagcctgtcc tggactatcc ttgtcacgtc agacacgcgt gtgtcgttgt gcgctttttt
     1741 tgggtgaaag gagtaagaaa atggcgacag gaaagtcctg ctctcgctgg tttgcgcctc
     1801 ttgcggcgtt attaatggta gttagcctga gtgggtgttt tgataaagaa ggcgatcagc
     1861 gtaaagcgtt tatcgacttc ctgcagaata cagtgatgcg tagcggtgaa cgtctaccaa
     1921 ccctgactgc cgatcagaaa aaacagtttg gtccttttgt ctctgattac gcgattctgt
     1981 atggttattc tcagcaggtg aatcaggcga tggattccgg tctgcgcccg gtcgtagaca
     2041 gcgttaacgc aattcgcgta ccgcaggatt acgttacgca aagcggtccg ctgcgtgaaa
     2101 tgaacggttc gctgggtgtg ctggcgcaac aactgcaaaa tgcgaagttg caggccgatg
     2161 ctgcgcactc tgcgctaaaa cagaccgatg atttgaaacc ggtctttgat caggcattca
     2221 ccaaagtggt aacgacgcca gctgatgcat tgcaaccgtt gattccggtt gcacaaactt
     2281 tcacgcaaca actggtgatg gttggagact acattgctca acaaggtact caggtgagct
     2341 ttgtagcaaa tggtatccag ttcccgactt cgcagcaggc aagtgaatat aacaaactga
     2401 ttgcgccgtt accggcacaa catcaggcgt ttaatcaggc ctggactaca gcagttactg
     2461 caacccaata aagagtaaaa gcccgagcga ttatcgggct ttacttcacg cagtcgcggc
     2521 ttagtccgcg acgtgcggat tcacacagtt cttctcaacc tttccttgta acgcatcaat
     2581 caaattatcc acggcacagg cggccatgcc ataacgcgtc tcatgggtgg cagatccaat
     2641 atgcggtact gcgacgacgt tggccattga gagcaacggc gaatctacgg acagtggctc
     2701 ttgttcgaag acatccagcc cggcggcgtg aatttcgcct ttctgcaatg ctgcgatcag
     2761 tgcattttcg tcaaccaccg ggccacgtcc ggcattaatg aaaatggcgg agggtttcat
     2821 tttggcgaat tgttctgcgc caaacagatg atgcgtctca tcagttaacg gcaggatcag
     2881 gcaaacgaaa tctgactctt gtaacagagt atccaaatcg cagtagcggg cgttgaagcg
     2941 ttcttctgct tctttatggt ggcggcgcgc gttatagagg atgggcatgt tgaagccaaa
     3001 gtgcgcacgt tgtgccagcg ccatgccgat ccgtcccatc ccgacaatgc ccagtgtttt
     3061 atggtgaacg tcagtgccgt accagtccgg gcctatgctc gcggtccatt cgcctgcttt
     3121 tacccgttct gctacctcca caacccgacg agcggtagac aacaccagcg ccatcagcgt
     3181 atcggcgacg gtttctgtta atacggttgg cgtgtgcatc agcagaattt ttcgggcggt
     3241 aagcgcatcg acatcaaaat tgtcatagcc gacggagatc gttgatgtgg cacgcagttt
     3301 cggcattttt tccagcaatg cggcatctac attctcgttt gaacccagta aaccttcagc
     3361 ttcggcaaaa attgctgcat tttgttcgac ggtttgtggg ctgaggtttg ccacctggtg
     3421 aacggtgaaa tgctcttgca ggcgttgcag taaatcatca ggtaaggctt tgtagaggat
     3481 aacggacggc ttcatgcttc tctccattca ctgataaggc gctcacctta gcctgaaata
     3541 tgatgaagga aaactgaaga atgccaggtg atttctgcat cacctggcat gaaagggatt
     3601 acagcgggct taaggtaatt tctacacggc ggttttgcgc cttaccttct gcggtgctgt
     3661 tgctggcgat tgggttagcc gggccaaggc cctgagtacg gatgcggctg gcgtccacgc
     3721 cctgggtgat caacgcgctg gcaacggaat ccgcacgctg ctgggagaga cgcatgttca
     3781 ggtcgtgacc ccccgtgctg tcggtataac caatcacgtt aaccgccgtt ttcggatact
     3841 ctttcagcac cattgccacg ccggtcaggg tgttagcgcc tgccggtttc agggtcgcgc
     3901 tgctgctgtc gaaggtcaca ttgttcggca tattgaggat aatgttatcc ccgctgcggg
     3961 ttacgctaac accagtgccg cgcattttgt cacgcagctt cgcttcctgc acatccatgt
     4021 aataacccac gccgccgccc agagctgcgc ctgctgctgc gccaatcagc gcgcctttac
     4081 cgcgatcttt cttcgaagaa gagagcgcac caatacccgc gcccacgaga gagtccagac
     4141 ctgcgccgat agcagatttg cctgcttcgc gttcgccggt gtaaggggta gttgtgcagc
     4201 cagataccgc cagagcgcca ctcactacgg cggcaataag ataaacacgt ttcttcattg
     4261 ttaatcctta ataacctttt tattctttgc cacgggttcc gtggcgggag attatgccgc
     4321 gtgaacatga agattattcc tgggaatact cggaaatttg taagtaatat ttaactgctc
     4381 aatacatcta acctttcagg agtcttcggt ttggccaact catcctcacg atattccgtt
     4441 ctgactgccg cccactgggg gcccatgctg gttgaaaccg acggcgaaac cgtgtttagc
     4501 tcgcgtggcg cgttagccac aggaatggaa aactccttgc agagcgcggt tcgcgaccag
     4561 gttcacagca atacgcgggt acgatttcca atggtgcgca aaggctttct cgcgtcaccg
     4621 gaaaacccgc aaggcattcg tgggcaggat gaatttgttc acgtgagttg ggatgaggcg
     4681 ctggatctta ttcaccaaca acataaacgc attcgtgagg cttatggtcc ggcatcgatt
     4741 tttgctggtt cctacggctg gcgttcaaac ggcgtgctgc ataaggcctc gacattatta
     4801 caacgctata tggcgctggc aggcggttat accgggcatc tgggggatta ttcgaccggt
     4861 gcggcacagg cgatcatgcc gtatgtcgtg ggtggcagcg aagtttatca acagcaaacc
     4921 agttggccgc tggtgctgga acatagcgat gtcgtggtgt tgtggagtgc taacccactc
     4981 aatacgctga aaattgcgtg gaatgcatct gatgagcagg ggctttctta cttttccgca
     5041 ctgcgtgaca gcgggaaaaa gctgatctgt attgatccaa tgcgatcgga aaccgtcgat
     5101 ttctttggcg ataaaatgga gtgggtggca ccgcacatgg gcaccgatgt tgcgctgatg
     5161 ctggggatcg cccatacgct ggtggaaaat ggttggcacg acgaagcgtt tctggcgcgt
     5221 tgcaccacag gttatgccgt cttcgcctct tatttgctgg gcgagagtga cggaatagcc
     5281 aaaaccgccg aatgggcggc agggatttgt ggggttcacg cagcgaaaat tcgcgagttg
     5341 gcggctcttt tccaccaaaa cacgaccatg ctgatggctg gctggggaat gcagcgccaa
     5401 cagcttggtg agcaaaaaca ctggatgatc gtcacgctgg cggcaatgtt ggggcaaatc
     5461 ggcacacccg gcggcggttt tggtctttct tatcattttg ccaatggtgg taatcccacg
     5521 cggtgttctg cggtgctctc ttccatgcag ggtagcttgc cgggtggcag cgatgcggta
     5581 gataaaatcc ctgttgcccg tattgttgaa gcactggaaa accctggctg cgcataccaa
     5641 cacaatggca tgaatcgcct cttcccggat attcgcttta tctggtgggc gggtggcgcc
     5701 aacttcaccc atcatcagga cactaatcgc ctgatacgag cttggcaaaa accggagctg
     5761 gtagttatct ccgaatgctt ctggacggcg gcggcaaaac acgcggatat cgttctgcct
     5821 gcgactacct cttttgagcg taatgatctc accatgaccg gcgattacag taatcagcat
     5881 ctggtgccga tgaagcaagt ggtgccgcca cgctatgaag cgcgtaatga ttttgatgtt
     5941 tttgccgagt taagtgaacg ctgggagaag ggcggttatg cacgttttac ggaaggaaaa
     6001 agtgagttgc aatggctgga aacgttttat aacgttgccc gacagcgcgg ggcaagccag
     6061 caggttgaat tgccgccatt tgctgagttc tggcaagcca atcagttaat tgagatgccg
     6121 gaaaacccgg acagcgagcg gtttattcgc ttcgctgatt tttgccgcga tccgcaggcg
     6181 catccattaa aaaccgccag cggtaagatt gaaatcttct cgcagcgtat tgccgattac
     6241 gcttatccgg attgcccggg gcatccaatg tggctggagc cggacgaatg gcagggcaat
     6301 gccgaaccgg aacagttaca ggtactttct gctcatccgg cgcatcgtct gcacagccag
     6361 ctgaattaca gttctctgcg cgaattgtat gcggtggcaa atcgtgagcc tgtcaccatt
     6421 catcctgacg atgccctggc gcgcggcatt caagatggcg atactgttcg gctgtggaac
     6481 gcacgcgggc aaattcttgc cggagtggtc attagcgagg gaattaaacc tggcgtgatt
     6541 tgtattcacg aaggggcatg gccggatttg gatttaaccg ctgacggtat ttgtaaaaac
     6601 ggcgcagtca acgtgctgac caaagatctc cccagctcgc ggctggggaa tggctgtgcg
     6661 ggtaatacgg cgctggcatg gctggaaaaa tacaacggtc cggaactgac acttacagcg
     6721 tttgaaccac cggccagctc ataatccagg tgggtagttg ggtttcatcc tgccatgcgc
     6781 aatcgacaat gtgaaaaccc tgcgcctggt aaaaatttat cgccggttga tttttttgat
     6841 aaacctccag catcaggtgg ggatggcgct gctgcacata ttgcatcagc gccttaccaa
     6901 taccgcgcct gacggccttc ggtgcgacaa acatcgctgc cagaaatcgg ccttccataa
     6961 tgctgacaaa accgagaagc ttactgtctt cttcccagac ccagttttgc gcattggcaa
     7021 gatacgcatc ccgcaccagc ggaatgcaat cacgccagta attcgctttt ataaagggat
     7081 gtccccaggt tgtactttcc agccacagtt cgaggatcgc ggggagttct gaacgttgcg
     7141 cttcccgaat catggtttat ttcccggata gcaacagcag ccaaccacat gatcattcac
     7201 cagcccacat gcctgcataa aggagtaaca gattgtggta ccgacaaact taaaaccacg
     7261 ttttttcagt gctttagata gggcgtcgga ggcgggcgta gatgtgggga tttcgctcaa
     7321 cgttgtggct tgtgtcacct gtggctgatg atttacaaac gaccagacaa agtcggcaaa
     7381 cggttcgccg ttctgttcca tttgcaggta cgcccgcgca ttaccaataa ttgcctgaat
     7441 tttcccgcga tggcggataa tcccggcgtc ctgtaccagt ctttcgacat cctcttcctg
     7501 cattgctgcg accttcaccg gatcgaactg atgaaagcag gcgcgatagt tttcgcgttt
     7561 tttgaggacg gtgatccacg ataacccagc ctgctgccct tcaaggcaga tcatttcgaa
     7621 cagtttttta ctgtcagttt caggcacgcc ccactcatta tcatggtagg caatataaag
     7681 cgggtcctga ctcacccagc cgcaacgttc catactttcc ctcgctatgt acccgatcgt
     7741 aaaaatttca gccgcttttc ttgacgcatc ggtgaaaaag tcaatattta atacagggct
     7801 actatgcccg atatccttca tacaatgaca ataatattgc cgaattcggc tcttccctgg
     7861 agtcgtgtta atgatcataa aaaaaagcgg tggtcgctgg cagctaagcc tgctggcgag
     7921 cgtggtaatc agcgcctttt ttctcaacac agcttacgcc tggcaacaag aatatatcgt
     7981 tgatacgcaa cccggacatt ccacagagcg ttacacctgg gatagtgatc atcaacctga
     8041 ttacaacgat attttgtcgc aacgtattca aagtagccaa agggcgctgg gactggaagt
     8101 caatctggcg gaagaaactc ctgtggatgt gaccagcagt atgagtatgg gctggaattt
     8161 tcctttatat gaacaggtta caaccggccc ggtcgcggca ttacattacg atggcacaac
     8221 cacctcgatg tataacgagt ttggcgacag tactaccacg ctgaccgatc cgttatggca
     8281 tgccagcgtg agtagcttag gctggcgtgt tgactcccgg cttggcgatc tccgaccctg
     8341 ggcgcaaatc agctataacc agcaatttgg cgagaatatc tggaaggcgc aatcaggcct
     8401 gagccggatg acggcgacaa accagaacgg caactggctg gatgtcaccg taggcgctga
     8461 tatgttgctc aatcaaaata ttgccgccta tgccgcgcta actcaggcag aaaataccac
     8521 taataatagc gactatctgt atacgatggg ggttagcgcc agattttaac gtaacagtca
     8581 caattgaaac cattgaataa caatagttgt ggtgatagtg ggtgctaact tacaaataat
     8641 aaatttggtg aataattgtc gcgtcattca ttcctgaact aaggcatttc attccgttct
     8701 gatggcattt catgccgttt ttccccaggc ataaaatgca cttcgttatg gttgtcggca
     8761 gagatttttc ctttttatta ctgcaggaat actgccatga caccttcaaa ttatcagcgt
     8821 acccgctggc tgacactcat cggtactatc attacccagt ttgcgctggg gtcggtttat
     8881 acctggagcc tgtttaatgg cgcgctttct gccaagctgg atgcgccggt aagccaggtc
     8941 gctttctctt tcggcttgtt aagtctgggg ctggcaattt catcttctgt tgcggggaaa
     9001 ttacaggaac gttttggcgt taaacgcgtc actatggctt ccggcatttt gctaggatta
     9061 ggcttcttcc tgacagcgca ttctgacaac ctgatgatgc tgtggttaag cgccggtgtg
     9121 ctggtcggtc tggcggatgg cgcgggttac ctgctgacgc tctctaactg cgtgaagtgg
     9181 ttcccggagc gtaaaggtct gatctccgcg ttcgctatcg gttcttatgg tcttggtagc
     9241 ctgggtttca aatttatcga cacgcagctg ctggaaacgg tgggtctgga aaaaacattt
     9301 gtgatttggg gagcgattgc gctggtgatg attgttttcg gcgcaacgtt aatgaaagac
     9361 gcaccaaaac aggaagtgaa aaccagcaat ggtgtggtgg agaaagatta cacgctggca
     9421 gagtcgatgc gtaaaccgca gtactggatg ttagcggtaa tgttcctgac tgcctgcatg
     9481 agcggcctgt acgtgattgg ggtagcgaaa gatatcgccc aaagtctggc acaccttgat
     9541 gtggtttccg cagccaatgc agtaacggtt atttccatcg ctaacctttc aggtcgtctg
     9601 gtgctgggca ttctgtctga caaaattgcc cgtatccgtg ttatcaccat tggtcaggtg
     9661 atttcgctgg tgggtatggc ggccctgctg tttgcaccat taaatgcagt gacgttcttt
     9721 gcagcgattg cctgcgtggc atttaacttt ggcggcacta ttaccgtctt tccatcactg
     9781 gtcagtgagt tcttcggcct caataacctg gcgaaaaact acggtgtgat ttacctcggt
     9841 ttcggtatcg gtagcatttt tggttcgatt atcgcctcac tgtttggcgg tttctatgtg
     9901 accttctacg tgattttcgc cctgctgatt ctgtcattgg cgctttctac gacgattcgt
     9961 cagccagagc agaaaatgtt gcgtgaggcg catatttaga aatatgttgc tactgaaata
    10021 aatacgagga gggagacttc aaagtctccc ttttttatgg acgcatatta aaagaacaat
    10081 aatattcata ccacaaatat attttattta tatatta
//
LOCUS       DAJVUP010000154        10066 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.154, whole genome shotgun sequence.
ACCESSION   DAJVUP010000154 DAJVUP010000000
VERSION     DAJVUP010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10066
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.154"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..186
                     /locus_tag="OQQ75_003442"
     CDS             <1..186
                     /locus_tag="OQQ75_003442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310303.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977647.1"
                     /translation="QICEMFGRVQRDPFWVKNIMSPSKLREKWDELVIRLGRSPVQRC
                     VNHISEPDTEIPPGFRG"
     gene            227..649
                     /locus_tag="OQQ75_003443"
     CDS             227..649
                     /locus_tag="OQQ75_003443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HCS1977648.1"
                     /translation="MAKVFTQEEREKIKGQVVELVRQSGRETLRQLEVKTGATRYLMS
                     VLARELVASGDVYNSGYGLFPSEQARKDWQNARKKLSRAKLKEPSAVDPDLIWSLPDG
                     EIRRYDRRQNIICRECRKSEVMQRILAFYQGNARYLLK"
     gene            902..1801
                     /locus_tag="OQQ75_003444"
     CDS             902..1801
                     /locus_tag="OQQ75_003444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMEK domain-containing protein"
                     /protein_id="HCS1977649.1"
                     /translation="MIDPLIRNLQSDIALLQLYIAQRKQAGFHDMERIIESLTIFMFR
                     ALKMGELVNMNQIKVNFPAIDLADNKNMIAVQVTTNASPAKIKKTIESFEETNEIGES
                     LKDKYSTLYIFGFCKASRYLTPSYCKIIDPSYFVNELCDKADEDMVQDMIDAIRRHHD
                     YTSLHPWSDKDSLEIILNIINRNAIKHRMSCEGSLSDMLTGLKEINEVITKGTIQRKQ
                     RSKSISDFKDQSMVKFMRGVMDDLSVIQAIVNKSKVNQGDMVYISHEDMINIDKLKAK
                     IASDSSEIARLNNIDITLNVVDL"
     gene            complement(2116..2769)
                     /locus_tag="OQQ75_003445"
     CDS             complement(2116..2769)
                     /locus_tag="OQQ75_003445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HCS1977650.1"
                     /translation="MNYKINGINIRSENAAKPHTMPSNYLCKQIESTNKNGNALDFGC
                     GKLRYSEQLVNKFETVTFLDSRRQLERVQIIRGVQTTIPDYVINNYKNANIVSYENID
                     KITNHYDFILCANVLSAIPCESTIHKVLSAIRELLKSDGEALIVNQYKSSYFKRYESG
                     IKHLHGYIYQNSRNAFYYGLLDVDTVSKICSDNNLEIIKSWSKAGSSYVVVGKHIHI"
     gene            complement(2786..3478)
                     /locus_tag="OQQ75_003446"
                     /pseudo
     CDS             complement(2786..3478)
                     /locus_tag="OQQ75_003446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000892866.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4221..4376
                     /gene="hokD"
                     /locus_tag="OQQ75_003447"
     CDS             4221..4376
                     /gene="hokD"
                     /locus_tag="OQQ75_003447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS1977651.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     TAYEPEE"
     gene            4593..4844
                     /locus_tag="OQQ75_003448"
     CDS             4593..4844
                     /locus_tag="OQQ75_003448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977652.1"
                     /translation="MMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALIN
                     FVDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE"
     gene            4911..5189
                     /locus_tag="OQQ75_003449"
     CDS             4911..5189
                     /locus_tag="OQQ75_003449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977653.1"
                     /translation="MARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPPCTEEQADW
                     LIQCYRRRGCEVKKALSLDYRHWIISVRLPYSERPPRPSRTFQQRIWR"
     gene            5191..6237
                     /locus_tag="OQQ75_003450"
     CDS             5191..6237
                     /locus_tag="OQQ75_003450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS1977654.1"
                     /translation="MRVLLRPVLVPELGLVIVKPGRESMPVFHNTRVLVEPEPKSMRN
                     LSSGVVPAVRQPLAEDKSLLPFFSDERVIRAAGGAGALSDWLLRHVKSCQWPHGDYHH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLGQLAHQNLSAWMIDVILHAMNGSQERE
                     LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR
                     TKNLAPLSHAHQQNPPQEETVVSIAVDPESPESFMKRPKRRRWVNEKYTRWVKTQPCA
                     CCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLI
                     FRFLDHAFATGVLG"
     gene            6250..6624
                     /locus_tag="OQQ75_003451"
     CDS             6250..6624
                     /locus_tag="OQQ75_003451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HCS1977655.1"
                     /translation="MLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQ
                     RLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQ
                     RVPGGRLGVKIYPIMLEGQVKK"
     gene            6621..7442
                     /locus_tag="OQQ75_003452"
     CDS             6621..7442
                     /locus_tag="OQQ75_003452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
                     /protein_id="HCS1977656.1"
                     /translation="MKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNR
                     AEMGFSAFLGKMGISMNDRERATELLTEYALSRCDRVAALRKLPAEIKPAVMRIMASY
                     AFEDYARSAASKKQCSCCHGKKFIESEVFTNKIQYPDGKPPVWAKCTKGVYPSYWEEW
                     KKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGC
                     ERLPSTEAFNAICKVTSAITLDTWKKSVKRFYDTLVVRFDIEEAWAERQLKRVTR"
     gene            7669..7909
                     /locus_tag="OQQ75_003453"
                     /pseudo
     CDS             7669..7909
                     /locus_tag="OQQ75_003453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8017..9066
                     /locus_tag="OQQ75_003454"
     CDS             8017..9066
                     /locus_tag="OQQ75_003454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001575625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1977657.1"
                     /translation="MLNTVKISSCELINADCLEFIRSLPENSVDLIVTDPPYFKVKPE
                     GWDNQWKGDDDYLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRERFSVLNH
                     IIWAKPSGRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALKQHVMA
                     PLISYFRDARAALGITAKQIADATGKKNMVSHWFSASQWQLPNESDYLKLQSLFARVA
                     EEKHQRGELEKPHHQLVDTYTSLNRQYVELQSEYKHLRRYFGVTAQVPYTDVWTHKPV
                     QFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELET
                     GRFEQTVREVQDLIV"
     gene            9116..9191
                     /locus_tag="OQQ75_003455"
     tRNA            9116..9191
                     /locus_tag="OQQ75_003455"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9149..9151,aa:Ile,seq:cat)
     gene            9201..9277
                     /locus_tag="OQQ75_003456"
     tRNA            9201..9277
                     /locus_tag="OQQ75_003456"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9235..9237,aa:Arg,seq:tcg)
     gene            9367..9453
                     /locus_tag="OQQ75_003457"
     CDS             9367..9453
                     /locus_tag="OQQ75_003457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3927 family protein"
                     /protein_id="HCS1977658.1"
                     /translation="MVDFSSRIMSVLSDGVLVAGVWLLLSRC"
BASE COUNT         2792 a         2081 c         2468 g         2725 t
ORIGIN      
        1 caaatttgtg aaatgtttgg tcgggtacag cgggatccgt tctgggtaaa aaacatcatg
       61 agcccgtcaa agctccgcga aaaatgggac gaactggtca tccgcctggg gcgttcacct
      121 gtacagcgtt gtgttaatca tatttctgaa ccggatacag aaattccgcc tggtttcaga
      181 ggataagttt tgatttcagg tcatgaggta attttaaggg ggacttgtgg caaaagtttt
      241 tacacaagaa gagcgggaaa aaattaaagg gcaggtggtg gaactcgtgc gccagagcgg
      301 tcgtgagacg ttacggcaac tggaagtcaa gacaggtgcg acaagatatc tgatgagcgt
      361 tctcgcaaga gagctggttg ccagcggcga tgtatacaac tctggttacg ggttattccc
      421 gtctgaacag gcgcgtaagg actggcaaaa tgcccgtaaa aagctctcaa gggcaaagct
      481 gaaggaacca tctgcggttg atccggacct tatctggtca ttacctgacg gagaaatacg
      541 tcgctacgac aggcgtcaga acataatctg tcgcgagtgc cggaagagtg aagttatgca
      601 gcgcatacta gcattctatc agggaaatgc tcgatattta ttgaagtgat gagattaaag
      661 tttattagtt cagatattga ttggctcttt tgtggagtag ggtagagtta gtgtgtttgt
      721 ctgcttggtg ccagcagcgg atatgtttaa caacagaaag cattcagcat ggttagtgga
      781 tttgcaaagt ggattaggat ttgagaaact ttgatgaagt tgtaaagctt gtttctataa
      841 aaatagaaat ttaactaata gttaaacaca cctccagctt cattgaaaag gattattagc
      901 tatgattgat ccacttatta gaaacttaca gagtgatatt gcactactcc agctttatat
      961 cgcgcaacgc aaacaggcag gctttcatga catggaaaga ataattgagt cattgaccat
     1021 ctttatgttt cgcgcgctga aaatgggtga actggtaaac atgaatcaga ttaaagttaa
     1081 ttttcccgcc attgatttag ctgataataa aaacatgata gcagttcaag ttactacgaa
     1141 tgcaagtcca gcaaaaatta aaaaaactat cgaatctttt gaggaaacaa atgaaatagg
     1201 agagagtctg aaagataaat actctacttt atatattttt ggtttttgta aagcctcaag
     1261 atacctaact ccaagttatt gtaaaataat cgaccccagc tatttcgtga atgaactttg
     1321 cgataaagca gatgaagata tggtccagga tatgattgac gccattcgac gccatcatga
     1381 ttatacatca ttacatccat ggagtgataa agattcactc gaaattatac tcaatattat
     1441 taatcgcaat gcaataaaac atcggatgag ttgcgaaggc agtctgtctg atatgctcac
     1501 tggtttaaaa gaaattaatg aagtaattac aaaaggaaca attcaacgta agcaacgttc
     1561 aaaatcgata tctgacttca aagatcaaag catggtgaaa tttatgagag gtgtaatgga
     1621 tgatttgtct gttattcaag ccatagtgaa caaatctaaa gttaaccaag gtgatatggt
     1681 ttatataagc catgaagata tgattaatat tgataaatta aaagctaaaa tagcaagtga
     1741 ttcatcagag attgcaaggc taaataatat tgatataaca ctaaatgttg ttgatttata
     1801 attgtcgatt tagcaaaaca gagaatgctt tgaaagtttc accgagaaat atttattgtg
     1861 aacctcctta ttgtttatcg acttttactc tccgctcatt gcagtactgt cggagaaggc
     1921 tactatgtac aagaagcagc taacataagc gagcatcact attgatatta ggaagagtat
     1981 ataaaaactt catgctgaac cttacaaaag tagataaacc ggcaatggcc taagtggcag
     2041 ggtcatgttg atccggcact gccgagctaa taattaacaa gcaaatcact ctttctaata
     2101 atttgttgaa ataaactaaa tatgtatatg tttaccaaca accacatatg aactacctgc
     2161 tttgctccat gattttatta tttctaaatt attatctgag catattttac ttacagtatc
     2221 cacatctaat aaaccatagt agaaagcatt acgagagttt tggtatatat acccatgcaa
     2281 atgtttaata ccgctctcgt acctcttgaa ataagaactt ttgtattgat tgacaatcag
     2341 tgcttcacca tcactcttta ataattctct aatcgcactg aggactttgt gaattgtgga
     2401 ttcacatgga attgcggaaa gcacgtttgc gcaaagtatg aaatcataat gatttgttat
     2461 tttatctata ttttcataag aaacaatatt agcattctta tagttattta tcacgtaatc
     2521 tggaatcgtg gtttgtacac ctctgataat ttgcactctt tctagttgtc ttctggaatc
     2581 taaaaatgtc acagtttcaa atttatttac taattgttct gaatatctaa gttttccaca
     2641 tccaaaatca agggcattgc catttttatt agtgctttca atctgtttac agagatagtt
     2701 agatggcata gtgtgcggtt tcgctgcatt ttctgaacgt atgtttattc catttatttt
     2761 gtaattcaaa atcaacctcg tttaaaaaaa tattgttatt gttaaagaat tcttttattt
     2821 tgctatcagg tatttgtctt acttggcttt ctgttcttgg tttaactgat gctatgaaaa
     2881 taaggaagtc aaatgcgaca agagaaataa tccacaacca aagattaatt aaagagccag
     2941 taacagagaa tatatttgtt aatttggcga tacttattat taaaatagta acaaatgcga
     3001 ttactgtatg ttcaaagaaa acccaaaagt aataaacttt gttccagaaa agttcaacgt
     3061 aatgtttgtc ttttaactct ttaacttctg ggtaatacag tttactcatt accttgtgag
     3121 attcatcagt agttaatttt ctcgtaacgc ctgcaatttt tgctaatggt ttaataatta
     3181 aatgactatc ccacatcttc cttattccaa taatttttgc tacattatta tgtagatcta
     3241 aagctccact aattactgac caaaaaactg aagatgcaat tggtaatatg ccaaaggtta
     3301 atatccattt aataaattcc tcgtagtctt taacgggggg gatatacttg gcattaatgc
     3361 caaccaatgg catgtagcca taaatgacta atgataggta aaatataaat gtagtaataa
     3421 aagtcgcctt atggagcata ggcaacattt cattataact ctttggtggt tctaacattt
     3481 tactctccaa acattcaaaa aaaagctaat cttctataat aacgaaattc agctggcaca
     3541 attaaagatt aattgccacc aatttcttga ttttataatt ttatctaaat gtttttgatt
     3601 aatctagtcc taaaagaaac ctactgcata aatatttatg ctgatgaccc actccctgtt
     3661 cgttaacaca tagcaacgtt agtaatgcat cctaagtgat caatattttt gctagcttca
     3721 tctgctcgct caaagggaac tataatgttg gcttgcgtgt gacttggcat gtttaaagaa
     3781 gtgctggtgg tgactggttg ctgttttcca tttccacaga acaaaatcat agaaactata
     3841 cccagtagtt gtattgaatc actgacgaga cagcctcata tttatcagga ctggtgtacg
     3901 tccaatacag gaggttgtgg tgctggttct caaatgtgcg ctggctattg ctgctgtaat
     3961 ggcaatttat tgtcttgctg ttgttcttat ggatcacctt tctgattgat ttcatattgg
     4021 cgaggtaacg gtagttaagt agaattgctg cgggtgcttg aggctatctg cctcgggcat
     4081 caacaccaaa ggcagataga gaaaagcccc agttaacatt acgcgtccgg caagacgctt
     4141 aacattaatc tgaggccata tctatgctct acacacgtag gttagcctct tacgtgccga
     4201 aaggcaagga gaagcaggct atgaagcagc aaaaggcgat gctaatcgcc ctgatcgtca
     4261 tctgtttaac cgtcatagtg acggcactgg taacgaggaa agacctctgc gaggtacgaa
     4321 tccgaaccgg ccagacggag gtcgctgtct tcacagctta cgaacctgag gagtaagaga
     4381 cccggcgagg gagaaatccc tcgccacctc tgatgtggca ggcatcctca acgcacccgc
     4441 acttaacccg cttcggcggg tttttgtttt tattttcaac gcgtttgaag ttctggacgg
     4501 tgccggaata gaatcaaaaa tacttaagta gcgcgcaggg ataagaggga tggtccctta
     4561 aaggggagag ctaattatcc ggaaggattc tgatgatgaa catcgaagaa ctgcgtaaaa
     4621 ttttttgtga agatggcctc tatgctgtgt gcgttgaaaa tggaaatatt gttagtcatt
     4681 accgcattgt gtgtttgcaa aaaaatgggg ctgcgttaat taattttgtg gatgcccgag
     4741 tgacggacgg atttatcttg cgcgacggtg agtttgtcac ttcattacag gcattgaaag
     4801 agatcggaat aaaagctggc ttttctgctt tttcagaaga ataaactcat ctacaatctt
     4861 gcgcggggct gaactcccgc tgagtaacac cgtgccaccg gagaaaaccg atggcacgca
     4921 acgcaaaata ttacaatcat gataattcga ccgttcttgc ccacacgcac gagcggtatt
     4981 ctcatgcatt taagtcagac tggtaccagc atcccccatg cactgaagaa caggccgatt
     5041 ggctcattca gtgttaccgc aggcgcggat gcgaggttaa aaaagccctt agcctcgact
     5101 accgtcactg gataatctcc gtcaggctcc cttactccga acggccaccg cgtccgtccc
     5161 gcacattcca gcaacgtatc tggaggtaac gtgcgggtat tacttcgacc tgttctggta
     5221 ccggaactcg ggctggtgat cgttaagccg ggccgtgaat ccatgccggt attccacaat
     5281 acccgggtac tggtggagcc ggaaccgaaa agcatgcgta atctgtcgtc cggggtcgtt
     5341 cctgccgttc gccagccgct ggcggaggat aaatcattac tgccattttt cagcgacgaa
     5401 cgagtgattc gtgctgctgg tggcgctggc gcattgtctg actggttact gcgccatgtt
     5461 aaatcctgcc agtggccaca cggcgattat caccacagtg aaaccgtcat tcaccgttat
     5521 ggtaccggcg caatggtgtt gtgctggcac tgcgacaacc agctgcgcga ccagacctcc
     5581 gaatcactcg ggcaacttgc tcaccaaaac ctgtctgcat ggatgattga cgtcatactc
     5641 catgcaatga atggctcgca ggaacgggaa ttatcgctgg ctgaattatc ctggtgggcg
     5701 gtccgcaatc aggtggcgga cgcgctaccg gaagcggtat tacgtcgttc gctggggttg
     5761 cgtgcggaaa aaatccgctc aatgtaccgt gaaagcgaca tcgtaccggg agagcagacc
     5821 gccaccagca tactgaagca gcgcacaaaa aatcttgcgc cgctgtctca cgcccaccag
     5881 caaaacccgc cacaggaaga gacggtggtc agcattgccg ttgatcctga gtctccggaa
     5941 tctttcatga aacgacctaa acgtcgccgc tgggttaacg agaaatacac acgctgggtg
     6001 aagacacagc cgtgtgcgtg ttgtggtaag ccagccgacg atccccatca cctgattggt
     6061 catggtcagg gcggaatggg gacaaaatct cacgatattt tcacgctacc gctgtgtcgg
     6121 gagcatcaca acgagcttca tgcggatcct ctggcgttcg aagaaaagca tggttctcag
     6181 gttgatttaa tttttcgttt tcttgatcac gcctttgcaa ctggcgtgct tgggtaaaag
     6241 aggtgactga tgctcataga tttggtttta ccttacccgc cgacggtgaa cacttactgg
     6301 cgacgccgtg gcagcacata ttttatctcg gaggagggaa agcgttatcg ccgggctgtg
     6361 gcgcttattg ttcgccagca gcggctgaaa ttaagcctgt ccggaaggct ggcgataaag
     6421 gtgattgcag agccaccgga taagcgtcgt cgcgacctgg acaatattct gaaagcacca
     6481 ctggatgcgc tgacgcatgc cggacttctc atagacgacg agcagtttga tgaaatcaat
     6541 attgtgcgcg gtcagcgcgt tcctgggggg cggctgggcg tgaagattta ccccataatg
     6601 cttgaagggc aggtcaaaaa atgaaactgg aagatttacc gaaatactac tccccaaaat
     6661 cccccggcct gactgatgca tcggcctcaa cgtcgaaaga tgcgctgagt atcactgatg
     6721 tgatggccgc gcagggcatg acacagaatc gggctgagat ggggttttct gcgttccttg
     6781 ggaaaatggg cattagtatg aatgacagag agcgggcaac agaattgctg acagaatatg
     6841 cactcagtcg gtgtgatcgc gtggcggcgt taagaaaact cccggcagaa ataaaaccgg
     6901 cagtgatgcg tattatggct tcgtatgcgt ttgaagatta tgcccgtagc gcggcgagca
     6961 aaaaacagtg ctcctgctgt cacggaaaaa aatttattga aagcgaggtt tttacaaaca
     7021 agatccagta tccggatggt aagccgccgg tatgggcaaa gtgtacgaaa ggtgtgtatc
     7081 cgtcttactg ggaagaatgg aaaaaagtca gggaggtggt aaaagttgcc tgtccggagt
     7141 gtggcggaaa gggtgaggtt tccaccgcct gtaaggattg ccgtgggcgt ggtgtcgcca
     7201 ttcatcgtga agagtcggta aaacgtggta tgcctgttat cagagactgc cagcgttgtg
     7261 gtggtcgtgg ctgtgaaaga ctaccatcaa cggaggcatt taatgccata tgcaaagtga
     7321 cgagtgctat cacgcttgat acgtggaaaa aatcagtgaa acgcttttac gatacgttgg
     7381 tggttcggtt tgacattgaa gaggcatggg cggagcggca gttaaagagg gtaacgcgat
     7441 agtgttgttg atttttcccg aatctgtggt aaatttgctc taacgatggg cgttttatgc
     7501 ctgacgttag aagatttttt acaccccgcc gcctggcggg ttttttatga ctgaaatcgc
     7561 gtcagtatag taaacgcgct ggtggcggtg aatacctgtc tttcagcttg ctggcttttt
     7621 cgacaagagt tattggtgtg tcacgttaac cggaaaaggg aaaaagacat gctaaaacag
     7681 caggatatga cagaaaccgc cagagtggtg tttaatgaat taagcgttac cgaaccggcg
     7741 acagtcgggg agatagcgca gaatacttac ctttcacgcg aacgctgcca gttaatactg
     7801 acccagctgg ttatggcgga tctggcagac tatcagttcg gttgttacag acgccttccg
     7861 cagtgaaggc ttttttattt gtggtaaatg ggcggctggt gggtgttagg ggcacccacc
     7921 agccatctgc tcatgcgttg ggttcacaag caaacctcag gcccactgct ttgcgcaaaa
     7981 gcagaatgag cctatcagag acaggcttaa tgatccatgc ttaatactgt aaaaatatcc
     8041 agttgtgagt taatcaacgc cgactgcctg gaatttatcc ggtcgttacc cgaaaattct
     8101 gttgacctga tagtcacgga cccgccgtac tttaaagtga agcctgaggg ctgggataac
     8161 cagtggaagg gcgacgatga ttacctgaag tggctggacc agtgtctggc gcagttctgg
     8221 cgggtgctga aacctgccgg aagtctttac ctgttctgtg gtcatcgcct ggcatctgat
     8281 atcgaaatca tgatgcgtga acgcttcagt gtgctgaacc atattatctg ggcgaagccg
     8341 tccggacgct ggaacggatg caacaaggaa agcctgcggg cgtatttccc cgccacagag
     8401 cgcattctgt tcgcggaaca ttatcagggg ccgtatcgtc cgaaagatgc cgggtatgcg
     8461 gcgaagggca gtgcactgaa acagcatgtg atggccccgc tgatttctta ctttcgtgat
     8521 gcgcgcgcgg ccctggggat aacggcaaaa cagattgcag atgccacagg aaagaaaaac
     8581 atggtgtcgc actggttcag tgccagtcag tggcagctac cgaacgaaag cgattatctg
     8641 aaattacagt cgctgtttgc ccgggtggca gaagagaaac atcagcgcgg tgaactggaa
     8701 aagccccacc accagctggt ggatacgtat acgtcactga accggcagta tgtggagctg
     8761 cagagtgaat ataagcatct gcggcggtat tttggtgtga cggcgcaggt gccgtacacg
     8821 gatgtgtgga cacataaacc ggtgcagttc tatcccggga aacatccgtg cgaaaaaccg
     8881 gcagaaatgc tgcagcagat aatcagcgca agcagtcgtc cgggtgacct ggttgcagat
     8941 ttttttatgg gctcaggttc aacggtaaaa gcggcactgg cgctcgggcg tcgtgcgatt
     9001 ggcgttgagc tggagaccgg acgttttgag cagacagtca gggaagttca ggatttaatc
     9061 gtttgaaacg gatgagattg cagaattaat tacgcaccat tattattctg ctcccggccc
     9121 tttagctcag tggtgagagc gagcgactca taatcgccag gtcgctggtt caaatccagc
     9181 aagggccacc atatcacata ccaccattag ctcatcggga tagagcgcca gccttcgaag
     9241 ctggttgcgc ggggttcgag ttctcgatgg cggtccattt atcggtattc tgcgttgtta
     9301 gctcagccgg acagagcaat tgccttctaa gcagctgtgg ttgcactcct gttgtttctg
     9361 gtggtgatgg tggacttcag cagccggata atgtcggtgc tgtctgatgg tgttttggtg
     9421 gcgggtgtgt ggttgttgct ttcccgttgc tgaaaaagaa agcatcaggc gattagcagg
     9481 gtatcagtta cccgttgaaa tttttaaata cctcacaatt ccacagcttg atgattgtct
     9541 ggctgccgga gaatttgtta aaaattacat cgcatggtga atccccctca gcggcggggc
     9601 atctggcaaa gtgtatgatc cagagaacat gcaaattcag tagacaggct gaatttaccg
     9661 ggaggcccct ggcaccatgc gacagacaga aattaggcta tacttcagcc cctctccgga
     9721 ggggcttttc tgtgcaggat gtgtcacagt ttcctgaatt ctgagtactg tcctgttact
     9781 cagggtgcta tattttctga cgtgatgaaa gtctgccgga aggcggaacg tatcggaaat
     9841 gacccagtag agaaaacgtt gactcagata ccgatgctga gttaccggga aaccggcatc
     9901 acatgaccgc tatccttcca ggctcgctcc ggcgggcctt tttactgcag aaaacagttt
     9961 tcccgtaaaa tgccacgttg ctcataattc aggctggcga ttattgtctg gccggcggga
    10021 agtttgttaa aaaatttcgc atggtgaatc cccctgtgcg gagggg
//
LOCUS       DAJVUP010000155        10003 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.155, whole genome shotgun sequence.
ACCESSION   DAJVUP010000155 DAJVUP010000000
VERSION     DAJVUP010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10003
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.155"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..236
                     /locus_tag="OQQ75_003458"
     CDS             <1..236
                     /locus_tag="OQQ75_003458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1977659.1"
                     /translation="TLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLV
                     YEKTYTAELSSIAGTPIEAGPFDTVVLFKINYN"
     gene            388..1434
                     /locus_tag="OQQ75_003459"
     CDS             388..1434
                     /locus_tag="OQQ75_003459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HCS1977660.1"
                     /translation="MPVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIFSMRG
                     ITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAANWPIVLAILLVTLLSSAIVGWLL
                     VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTCM
                     MLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCMLRLPSGTMLIPMLAGAVLQ
                     SGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQILLSIFALLAICAGM
                     AWGLTRFMHIDFMTAYLATSPDGLDTVAVIAAGSNADMALIMAMQTLRLFSILLTGPA
                     IARFISTYAPKRSA"
     gene            complement(1431..2222)
                     /gene="nei"
                     /locus_tag="OQQ75_003460"
     CDS             complement(1431..2222)
                     /gene="nei"
                     /locus_tag="OQQ75_003460"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease VIII"
                     /protein_id="HCS1977661.1"
                     /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQH
                     VTHVGTRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL
                     LYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD
                     QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE
                     NKHHGALFRFKVFHRDGELCERCGGIIEKTTLSSRPFYWCPGCQH"
     gene            complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="OQQ75_003461"
     CDS             complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="OQQ75_003461"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HCS1977662.1"
                     /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACV
                     REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH
                     VKPHGMLYNQAAKEAQLADAIARAVYACDPALVLVGLAGSELIRAGKQYGLTTREEVF
                     ADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQHGRVKSITGEWATVTAQTVCLH
                     GDGEHALAFARRLRSTFAEKEIVVAA"
     gene            complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="OQQ75_003462"
     CDS             complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="OQQ75_003462"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpC"
                     /protein_id="HCS1977663.1"
                     /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV
                     GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL
                     KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLNVGIGGLEGRLLKDGDRLPIGKSKRDFM
                     EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSPQSNRMGYRLQGQILKR
                     TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ
                     PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN"
     gene            complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="OQQ75_003463"
     CDS             complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="OQQ75_003463"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HCS1977664.1"
                     /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVV
                     EAIPGMNNITVILRNPESLALDAIELLQRWWEESEALEPESRFIEIPVVYGGAGGPDL
                     AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
                     GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
                     "
     gene            complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="OQQ75_003464"
     CDS             complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="OQQ75_003464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radiation resistance protein YbgI"
                     /protein_id="HCS1977665.1"
                     /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA
                     SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA
                     HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT
                     GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT
                     ERGGIRALSEWLNENTDLDVTFIDIPNPA"
     gene            5601..7082
                     /gene="dtpD"
                     /locus_tag="OQQ75_003465"
     CDS             5601..7082
                     /gene="dtpD"
                     /locus_tag="OQQ75_003465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide permease DtpD"
                     /protein_id="HCS1977666.1"
                     /translation="MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYND
                     THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF
                     LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGSFSLMYAAGNVGSIIAPIACGY
                     AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV
                     LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF
                     SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE
                     SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL
                     FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY
                     SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES"
     gene            complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="OQQ75_003466"
     CDS             complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="OQQ75_003466"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HCS1977667.1"
                     /translation="MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWAT
                     HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFY
                     NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK
                     RLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN
                     GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL
                     IWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL
                     NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD
                     AAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQP
                     IVDHKEARLRTLAAYEEARKGA"
     gene            complement(8539..9048)
                     /locus_tag="OQQ75_003467"
     CDS             complement(8539..9048)
                     /locus_tag="OQQ75_003467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HCS1977668.1"
                     /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF
                     LAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGY
                     FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV
                     INLRHSGVL"
     gene            complement(9333..9707)
                     /locus_tag="OQQ75_003468"
     CDS             complement(9333..9707)
                     /locus_tag="OQQ75_003468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977669.1"
                     /translation="MFTKLSIAILLAFSAYVHAETSAPIFFEDVGSIDSWFSIKYQKY
                     ENVKDEQYPEILIYYGVKGSGINRVDGWFFSCAKAGRTCSLIFMADFGESRYFKPAKI
                     AMNKNNLIIRTSDVEIAFKITK"
     gene            complement(9692..>10003)
                     /locus_tag="OQQ75_003469"
     CDS             complement(9692..>10003)
                     /locus_tag="OQQ75_003469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000171008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1977670.1"
                     /translation="LQPGELSGKEFSKLTCGSIFEASKNDGAKDLDNGSCPSGYHKAQ
                     LFIRPHNFIGMGGDYHWYRQDANGEWSDKQGVGAIRFRGKDPFPPIDYPEKCGTIFLP
                     N"
BASE COUNT         2322 a         2721 c         2411 g         2549 t
ORIGIN      
        1 aaacgttggt tgaagaagat aaagcattgt tgattggtaa tggtctgaag ctacgtttgc
       61 tggatgaaaa cgcctcgcct tataccttca ataaatatgc tgaatacgcc gatttcacca
      121 gcgacatgtt ggtctacgaa aaaacctata cagctgaact ttcgtccatt gcaggtaccc
      181 ccatcgaggc tgggcccttc gatacagtgg tgctttttaa aattaactat aactgatttg
      241 ccatgatgcc ctttgcagcc ggaaagggca tctctttcag aaaattgctg attttcctct
      301 tttccttgat tactgttatt ttttcctggc ccggctttct ttatgctgta tcgatacacc
      361 aaagagaaaa taatgaggga gcgaaggatg ccagttttgc agtggggaat gttatgtgtg
      421 ctatcacttc tcctttctat tggtttcctc gcggtacatc tcccggcggc gctattactt
      481 gggccgatga tcgccgggat catcttcagt atgcgcggaa ttactctgca acttccccgc
      541 tccgcttttc tcgccgcgca ggccattctt ggctgcatga ttgcgcaaaa cctcactggt
      601 tcgattctca ccacgctggc cgccaactgg ccgatcgtgc ttgctatttt actggtgacg
      661 ctgctttcca gcgccatcgt gggttggtta ttggtgcgct atagctcact gcctggaaat
      721 accggtgcct ggggttcttc tccaggcggc gcagcggcaa tggtcgctat ggcgcaagat
      781 tacggcgcag atattcgcct ggtggcgttt atgcaatatc tgcgagtgct gttcgtcgcg
      841 ggggccgctg ttctggtcac ctgcatgatg ctgggtgata acgctgaagc ggttaaccag
      901 caaatcgtct ggttcccgcc agtgagcatt aatctcctgc ttacgatttt gctcgcagtc
      961 gttgccggta cggcgggatg catgctgcgt cttccttccg gcacgatgct catcccgatg
     1021 ctggcgggcg cagtgctcca gtctggtcag ctcatcacca tcgaactacc ggaatggctg
     1081 ctggcgatgg cgtatatggc aattggctgg cggattggtc ttggtttcga taaacaaatc
     1141 ttactgcggg cactacgccc actaccgcaa atcctgctgt cgatttttgc tctgctggct
     1201 atttgtgcag gtatggcgtg gggactgacc cggtttatgc atattgattt tatgactgcc
     1261 tacctcgcca ccagtcccga cgggcttgat accgtggcgg tcatcgccgc agggagcaat
     1321 gccgatatgg cgcttattat ggcgatgcaa accctgcgcc tgttcagtat tttgctgacg
     1381 gggccagcca ttgcgcggtt tatttcaacc tatgcgccga agcggtcggc ctagtgctgg
     1441 cagcctggac accagtaaaa cgggcgcgag gacaacgtgg ttttctcaat gatgccgcca
     1501 cagcgttcgc acagttcgcc atcacgatga aaaaccttaa agcgaaacag cgccccatga
     1561 tgcttattct catccacctg cccccgcgta gcgtaagaaa accgaggaat ctccagtaac
     1621 gcgtgtgcga gtgcatccag ttgcgccgca ttgagatctt tcgctttatg atttccagtc
     1681 aacccaacct gccagaggat ctccacccgc aaataattgc caagcccagc cagaaacgcc
     1741 tgatcgagca gtaatcctgc aaactgacgg ttacgaaagc gcggtgacaa taaccgttcc
     1801 tttaccacct ccggcgtcag attcggatcc agcacatcgg gaccaacgcg ttgtaaaaac
     1861 ggatgcgtgg tcagttgttc cggcctcaac atctcaatat ccgaggcgct ataaagcaga
     1921 atggttttgt cagccgtttg cagttttacc cgcaatactc gcgtggtctg cggctcttcg
     1981 ccggtatcaa ccacgcgcca gacgccgtaa agctgattat ggctgtagag cgttaagtcg
     2041 ttggaaaaat gagttaacaa cgccttacca cgcgttccca catgggtaac gtgttgaccg
     2101 ataagttgtg attgataagt ttttaactgc gggaaggcaa accagacatc agttagtggt
     2161 ttgcctttga tcgccgcctc caggttatcc gctgcacggc ggatctccgg gccttcaggc
     2221 atggtgatat ccttttttca ttctttatta atcggggtta tgctgcgaca acaatctcct
     2281 tttcggcaaa tgtagagcgt agtcggcggg cgaacgccag tgcgtgctcg ccgtcgccat
     2341 gcaggcagac tgtttgcgcc gtgaccgttg cccattcgcc ggtgatactt ttgactctgc
     2401 cgtgttgcac catctctagc gtttgcgcca gcgcctgttc ttcgttttca atcaacgcgc
     2461 ctggctgact tcgcggcacc agcgagccgt cagcctgata accgcgatcg gcaaacactt
     2521 cctcgcgcgt tgtcaggcca tattgcttgc ctgcacgaat cagctcgctt cctgccagcc
     2581 caacgagaac caatgctgga tcgcaagcgt ataccgctct ggcgatggcg tctgccagtt
     2641 gtgcttcttt cgccgcctgg ttgtacaaca tgccgtgcgg tttgacatga cgcattacgc
     2701 cgccttgcgc acgggcaatc gttgccagcg cgccaatttg atacagcgtc tgggcgtaaa
     2761 cggtttctgg cggcagctgc atggcgctgc gaccaaaatt ttccctgtcg ggaaaactcg
     2821 ggtgagcgcc aatcgcgaca ccatttttta ttgcttcacg cacgcaagcc tgcatggttt
     2881 gggcatcgcc tgcatgaaat ccacaagcaa tattggcaga ggaaaccagc gttaatagct
     2941 ctgcgtcgct ggcgcagcct tcgcccagat cggcgttcag gtcaattttc attgtgtagc
     3001 cgccacgcta attgttcgaa ataacgttgt tgatcttgcc gcgctttcag tgcctcttcc
     3061 agtgaacact ggacaaaatg aatcggctga ccgagcggaa tttgcgccag atggtacata
     3121 tcagcctcaa tgatacaggc aatacgcggg taaccaccgg tggtctgtgc gtcgttcatc
     3181 aacacaatcg gctgcccgtt atgcggcacc tgcaccacac ccggtaacaa accgtgagat
     3241 aacagttcgc gatcggtggt gcgttttaaa atttgcccct gtaagcgata gcccatgcgg
     3301 ttactttgcg ggctaagctg ccagggcgaa cgccagaatg catcctgcga ggcgcgatcg
     3361 aactcatgat attccggccc cggcaaggcg cgaatgcggt tgccccacag cagctgttta
     3421 acgccctgcg cttccataaa atcacgcttc gatttgccaa tcgggagtcg gtcaccatcc
     3481 ttcagtaaac ggccttccag cccgccaatc cccacgttga gatcggtgct gcatgacccc
     3541 attaccggcg gaacatcaat accacccgcg accgccagat aactgcgcat gccgtgctgc
     3601 gggcgtttaa gcgttaaacg ctggcctgct ttcatcggca agcgccagcc ggtccagacg
     3661 gcgttatcat ccagccgcgc ttcgcaaccg gcacccgtca gagcaaacca cccatcagtt
     3721 tcgaactcaa ccgttaactg accgagcgtg atctccagcg cgggggcatt ggcgtcatta
     3781 cccaccagca ggttagcaat gcgtaacgca ggcatatcca gtgcgccgca gtggctgata
     3841 cccgactggc gaaaaccgtg acgaccgcca tcctgcacag tggtatacat gcccgcacga
     3901 ataatcttca gcatactccc tccttctgcg gtacaaagcg cacgctgtct cccggacgta
     3961 ataagatggg ttcgtcacgc gccggatcaa acaggctgag tgaggtatga ccaatcaact
     4021 gccagccacc cggcgttgcc agcggataaa caccagtctg cggcccgccg atcccgacag
     4081 aacctgccgg aacgagcaag cgcggttcag cgcgccgtgg cgtgtgtagt tgttccggca
     4141 aactcccgag atacgggaag cccggttgaa aacctaaaaa ccagaccacg tattccacgg
     4201 aggagtgcaa ttcaacaacc tgtttttcgc tcaacccgca atgcgccgcg accaccgcca
     4261 aatccggtcc gcctgcacca ccgtaaacca ccggaatttc aataaagcga gactcaggtt
     4321 ccagggcctc gctctcctcc caccagcgtt gcaaaagctc tatggcatcc agcgccagcg
     4381 actcaggatt acgcaaaatc accgtgatat tgttcatgcc gggaatggct tcaaccacat
     4441 tcggcatatc caccagacgc tgcgccagtc gccagatccg tttctggcta gccagcgtca
     4501 ccggcggttc cagttccagc actaccgccg tttcacctat cagataacaa cgcgctcgtt
     4561 gcactttcga tccctctgat tattcgttat gcaggattag gaatatcaat aaaggtcaca
     4621 tcaagatcgg tattttcatt cagccactcg ctcaatgcgc gaataccacc acgttcagtg
     4681 gcatggtgac ctgcagcata aaaatgcaat ccctgctcgc gggctgaatg aatggtctgt
     4741 tcagaaactt cgccagtaat aaaagcatcc acgccaaaac gcgcggcgct atcgataaaa
     4801 ctttgcccgc cgcccgtgca ccaggcgacg cgctggacca cctcaggtcc ggtatcgcca
     4861 caccataacg gcttacgtcc cagacgcgct tcaatccagg aggctagttc cagtcccggc
     4921 acaggcatgg tcagctctcc ccacggcacc aacggctcaa tttcgcccat gaccgtgatc
     4981 cccagtaacg ccgccagctg tgcgttattg cccagctcag gatgtgcgtc aagcggcaaa
     5041 tgccagccat acaggttgat atcattcgcc agcaacgttt ttaaacggtt acgcttcatt
     5101 ccgcgaatga ccggagactc tcctttccag aagtagccat gatgcacaat gaccgcatcc
     5161 gcgcccagac gcactgcctc atcgagcaaa gcctggctgg cggtgacacc ggtaacaatt
     5221 ttttgcaccg tctctttgcc ttccacctgc aaaccattcg gcgcgtaatc actaatcgcc
     5281 gcgctgttca gtttttcgtt aatcagttgt tccagttcgg tgtttttcat cttcgcgcct
     5341 tccgtattct gatagctaca ccgttaacat agcgttacct cgcctgttcg tcgatagcca
     5401 atcttttgac atattaataa acaaacccga cgccaaaaga cgcaaattgt ttatatcatc
     5461 acgcttcagc taatgtatat ttatgcaatc agacagcata ttgcataaat aatcagatct
     5521 gtatcaaagt tttaacttta aggaaacaca agcacgccgc gcaactatta cgtgacgttg
     5581 ccgtcaattg tggaattatt atgaataaac acgcatcaca gccgcgcgct atttactatg
     5641 tcgttgcgct gcaaatctgg gaatatttta gcttttacgg catgcgtgcc ctgctgattc
     5701 tctatctcac caatcaacta aaatacaacg atactcacgc ctacgagtta tttagcgcct
     5761 actgttcgct ggtgtatgtc acgccaatcc tcggtggctt tttggcggat aaagttctcg
     5821 gcaatcgcat ggcggtgatg ctgggggcgt tattgatggc gatcggtcat gtggtgttgg
     5881 gtgccagtga gatccatccg tcattcctct atctgtccct ggcgataatt gtttgtggct
     5941 atggtctgtt taaatccaat gtcagttgcc tgctcggcga gctgtatgag ccaaccgatc
     6001 cgcgtcgtga tggcagtttc tcgctgatgt atgcagcggg taacgtgggg tctattatcg
     6061 cacctattgc ctgtggctac gcccaggaag agtacagctg ggcgatgggc tttggcctgg
     6121 cggcggtggg tatgatcgcg ggtctggtca ttttcttatg tggcaatcgt catttcacac
     6181 atacccgcgg cgttaataaa aaagtactgc gtgcgacaaa ctttctcctg cctaactggg
     6241 gatggctgct ggttctgctg gtggcaacgc ctgcgctgat taccgtattg ttctggaaag
     6301 agtggtcggt atacgcctta attgtcgcga ctattattgg cctgggtgta ctggcaaaaa
     6361 tttatcgcaa agcagaaaac cagaaacagc gtaaggagct ggggctgatt gtgacgctca
     6421 ccttcttcag tatgttgttc tgggccttcg cacaacaggg cggcagctcg attagccttt
     6481 atatcgaccg cttcgttaac cgcgatatgt ttggttatac cgttccgact gctatgttcc
     6541 agtcgattaa tgccttcgca gttatgctgt gcggtgtgtt cctggcgtgg gtggttaaag
     6601 aaagcgtcgc aggtaatcgt accgtgcgca tctggggaaa atttgctctt ggtctcggcc
     6661 tgatgagcgc cgggttctgc attctgacct taagcgcccg ctggtccgca atgtatggtc
     6721 actcttctct gccactgatg gtattaggcc tggcggtgat gggctttgcg gaactgttta
     6781 tcgacccggt tgccatgtcg caaattacgc gcattgaaat ccccggtgtg accggcgtat
     6841 taaccggcat ttatatgctg ctttccggcg cgattgcgaa ctatctcgcg ggcgtgattg
     6901 ccgatcagac atcgcaggct tcgtttgatg cttccggggc gatcaactac tccatcaatg
     6961 catatattga agtatttgat caaattacct ggggcgcact ggcgtgtgta ggactggtac
     7021 tgatgatttg gctgtatcag gcgctgaaat tcagaaaccg cgcgctggcg ctggagtcat
     7081 aataggccag caccatacct gataaaacgc tcgctgcgtt ttatcaggct cctttcctcg
     7141 cttcttcgta cgctgccagc gttcgcagcc ttgcctcttt gtgatcaact atcggttgcg
     7201 gataatccag catcacacct gctttctgcg cccacttcca cggctcatgc accgctttcc
     7261 ctggtacatc gcgcagctcc ggtaaccatc gacgaataaa ctcgccctca cggtcaaatt
     7321 tctcgccctg ggttgtcggg ttgaaaatac gaaaatacgg cgctgcatcg gttccggttg
     7381 aagcggccca ctgccagcca ccgttattgg ctgccaaatc accatcaatc agctgcgaca
     7441 tgaaatatcg ctcgccttcg cgccagtcga tcaacaaatc tttcaccaga aaactggctg
     7501 taatcatccg tagccggtta tgcatccagc cagtgctgtt aagctgacgc atggcagcat
     7561 cgacaatcgg gtatcccgtt ttgccttcct gccaggcctg taaatgtgcg ggattgctct
     7621 gccactgcac acgatccgtc caggcaataa acggacaatg tttacacaac gaggggtaat
     7681 acgtcatcag atgacggtag aactcgcgcc agatcagctc actaagccag acactaccgg
     7741 ccccaccgtc cagcgcctgc ggctgttccg ccaacaagcg atgcaaacac tggcgaggcg
     7801 ataacccgcc cgttgccagg ctggcggaca aacgactggt gccttccact gccggaaaat
     7861 ctcgttgttg ctcatattct ccggcaccgt tctggcaaaa ctggcgtaat tgcgcaatcg
     7921 ccgctttttc ttccaccggg aaatgcgcag tatcgaaaga ctgacgagga taattcagcg
     7981 taatggatgg cgagggctct atcgatccgc tactacgaac ttttggcgca gcgacgcact
     8041 ccggcatccc ttcccgcagc cgtttcagcc aggcattctt aaaaggcgta aagactttgt
     8101 acatctcgtg attaccggtc atcaccgcgc caggcggcag gatcacgctg tcatcaaatc
     8161 cttcacacac cacgttacgc agcgctcttt caacttccac atcccgcgcc cgctcattca
     8221 cttcatactg atagttataa aacaggtggg taacgctgtt ttccgcgcac acctgtttaa
     8281 ctatttcgac actggcgaca aagtcatcca cttcacggaa caataaagga ataccttttt
     8341 ccgcaagcgc tatttgtagc ccattcagtt gagcattgat aagttcagcc tgacgcggcg
     8401 acatgttatg cgtcgcccac tggcgtggtg tagcgatata caacgccagc acgcgtgcag
     8461 acgaattgct gcaggcggca gccagtgcga gattatcgtg caaacgtaaa tcctggcgaa
     8521 accagaccag atgggtagtc ataaaactcc tgaatggcgc aagttaatca cacgcggcca
     8581 aagttcgaaa taacgctgcc ctgaaagcca ggcgtcagga taaagcgcca tatagtgttt
     8641 gatacgcatc agcggcgcaa gaagtggttg ctcgccacgg cgataactgt cgataagcgc
     8701 agccagctgc tggcgttctg tggaatcaat atgcgggcga aaataaccct gaacgtgcat
     8761 caaaacattg gtgtgatcgc gcgggttggc ggggtgagaa agcaaaacaa ctacgcgttg
     8821 gcggtactgg ttgtaatagt catccagatt ttgccactgg tgaatatcag ccacgaacgg
     8881 gccaagtttg cggtactccg gctgagaatg cgccagaaag acgagtttat agcggctgtg
     8941 ataatcgaga agcgccccgc gcgttaagcc atgttctttc agtcgatgta actcatgaag
     9001 ggcaaagata cggattaggg tgctgtcatc aaatcgttgt agattcatta ctgctcctga
     9061 acggtataaa ggagtaagtg tagacgatgg taaatgaatt ttatggggca gagtttttgc
     9121 ggggaagtat tttgttggta aaaatattat caacttcatc tgagcgagaa ttattctact
     9181 atttcccgag ctgcattcat tttttgtatt ttttattttt agaaaataac agttctcaaa
     9241 gcttaattac ctcactatta attgtatttc aaactaacaa tcgcactcca ttttctctct
     9301 ttaaaaaaca taaacactgt taaaacaaat atttatttcg ttatcttaaa tgctatttct
     9361 acatcactcg tccttataat caaattattc ttattcatag ctatttttgc aggtttaaaa
     9421 tagcggcttt caccaaagtc agccatgaaa attagactac aagttctccc agcctttgca
     9481 catgagaaaa accacccatc aactctattt attcctgaac ctttaacacc ataataaatc
     9541 agaatttctg ggtattgttc atccttcacg ttttcatatt tttggtattt aattgaaaac
     9601 caagagtcta tactgccaac atcttcaaaa aatattggag ctgatgtttc cgcatgaaca
     9661 tatgcagaaa atgctaacaa aatggcaata cttagtttgg taaaaatatc gttccacact
     9721 tttcaggata atctattggg gggaagggat cttttcctct aaatctaatt gctcccactc
     9781 cttgtttgtc agaccattcg ccatttgcat cctgacgata ccagtgataa tcccctccca
     9841 tgcctataaa attgtgagga cgaataaaca attgagcttt atggtaacca gatggacaac
     9901 tcccattatc taaatccttg gcaccatcat tttttgacgc ttcaaaaata ctaccgcaag
     9961 tgagtttaga aaactctttt ccagataatt ctccaggttg taa
//
LOCUS       DAJVUP010000156        10001 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.156, whole genome shotgun sequence.
ACCESSION   DAJVUP010000156 DAJVUP010000000
VERSION     DAJVUP010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10001
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.156"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(266..1609)
                     /gene="gdhA"
                     /locus_tag="OQQ75_003470"
     CDS             complement(266..1609)
                     /gene="gdhA"
                     /locus_tag="OQQ75_003470"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HCS1977671.1"
                     /translation="MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPK
                     YRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVN
                     LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
                     DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF
                     TEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTK
                     EKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVGAAHQ
                     LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG
                     WKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI"
     gene            1845..2117
                     /locus_tag="OQQ75_003471"
     CDS             1845..2117
                     /locus_tag="OQQ75_003471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnjH family protein"
                     /protein_id="HCS1977672.1"
                     /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP
                     CTQCCVYQDQNYSEGAVIKAEEILLQCQRDDKTLSTNPLLWRRVKP"
     gene            complement(2083..2490)
                     /gene="nudG"
                     /locus_tag="OQQ75_003472"
     CDS             complement(2083..2490)
                     /gene="nudG"
                     /locus_tag="OQQ75_003472"
                     /EC_number="3.6.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP pyrophosphohydrolase"
                     /protein_id="HCS1977673.1"
                     /translation="MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVELDES
                     QQQALVRELNEELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALV
                     WCSPEEALQYPLAPTDIPLLEAFMALRAARAAD"
     gene            2577..3188
                     /locus_tag="OQQ75_003473"
     CDS             2577..3188
                     /locus_tag="OQQ75_003473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416272.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HCS1977674.1"
                     /translation="MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALP
                     FLALGWYLAALVVILLNRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFIL
                     AAPEQNALAGGWLLFAFISTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTET
                     ILLFVLGCLFPAWFAWIFGALCWMTTFTRVWSGYLTLKSLQRQ"
     gene            complement(3197..4504)
                     /gene="ynjE"
                     /locus_tag="OQQ75_003474"
     CDS             complement(3197..4504)
                     /gene="ynjE"
                     /locus_tag="OQQ75_003474"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YnjE"
                     /protein_id="HCS1977675.1"
                     /translation="MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAID
                     TRPSAFYNGWPQTLNGPSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKADAPVALY
                     GNDKDVDAVKTRLQKAGFTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEV
                     TAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKH
                     GIRHDTTVILYGRDVYAGARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKV
                     KAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGE
                     IAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRAS
                     ETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGPDSSK"
     gene            complement(4571..5224)
                     /locus_tag="OQQ75_003475"
     CDS             complement(4571..5224)
                     /locus_tag="OQQ75_003475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1977676.1"
                     /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF
                     SWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALP
                     STLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
                     FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR"
     gene            complement(5224..6759)
                     /locus_tag="OQQ75_003476"
                     /pseudo
     CDS             complement(5224..6759)
                     /locus_tag="OQQ75_003476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416269.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(6732..7898)
                     /locus_tag="OQQ75_003477"
     CDS             complement(6732..7898)
                     /locus_tag="OQQ75_003477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1977677.1"
                     /translation="MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDT
                     AINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGE
                     NFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRD
                     VTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDA
                     TFARVTAPLWQYLDALHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKI
                     ASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPVV
                     WDDPSVLDPQKLPDGQREILQSRMPQDLPPVLAEPHAGWVNALEQEWLRRYGTH"
     gene            complement(7908..8456)
                     /locus_tag="OQQ75_003478"
     CDS             complement(7908..8456)
                     /locus_tag="OQQ75_003478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HCS1977678.1"
                     /translation="MGLPPLSKIPFILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLV
                     SMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSTDKLLAVAD
                     WRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLS
                     ARFNSAMDIPAQGLCRIPEKRS"
     gene            complement(8456..9163)
                     /locus_tag="OQQ75_003479"
     CDS             complement(8456..9163)
                     /locus_tag="OQQ75_003479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1977679.1"
                     /translation="MMKMQSRKIWYYCITLIILLFAMLLAWALLPGVHEFINRSVAAF
                     AAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLS
                     WTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPF
                     DPISYAAGLTSIRFRSFFISTGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTV
                     VIFMAKKIWLERQKRND"
     gene            complement(9178..9855)
                     /gene="ydjY"
                     /locus_tag="OQQ75_003480"
                     /pseudo
     CDS             complement(9178..9855)
                     /gene="ydjY"
                     /locus_tag="OQQ75_003480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416265.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein YdjY"
     gene            complement(9860..>10001)
                     /locus_tag="OQQ75_003481"
     CDS             complement(9860..>10001)
                     /locus_tag="OQQ75_003481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1977680.1"
                     /translation="RFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKN
                     EG"
BASE COUNT         2386 a         2725 c         2583 g         2307 t
ORIGIN      
        1 atatctgctg ctatcgcaga aagttaacgg atgctgaact tgaagcgtgt tatcgttacg
       61 acaagcagtt ttgggagcac tacagtaaga aatgccgttg gcccataaga aatgttccct
      121 ggggagcatc atccgttaaa tactcataaa cgcctgaaat tttgccgggg gcgctgcgct
      181 tgcccggcct acattagagc gtaactgcaa tgaattgtgc ccatttgtag gcctgataag
      241 cgtagcgcca tcaggcattt acaacttaaa tcacaccctg cgccagcatc gcatcggcaa
      301 ccttcacaaa accggcaatg ttcgcgccct gcacgtagtt ggtttgctca ccttcaccac
      361 catgctcaac acaggcatgg tggatatcca gcatgatgtg atgcaaacgt gcgtcaactt
      421 tctcggcttt ccagcccagg cgcgcagcgt tttgcgccat ttcaaggcct gacgttgcta
      481 caccgccagc attagccgct ttacccggtg caaacagtac gcctgcctgc tggaacagtt
      541 cagtcgcttc gatggtggtc ggcatatttg ccccttcggc gacggcttta acgccattgg
      601 cgataagctg atgcgcggcg ccaacatcca gttcgttctg ggtggcgcaa ggcagggcga
      661 tatcaaccgg tacagaccac ggctgttggc cttcgagata gaccagacca aattctttgg
      721 cgtaatctgc cactcgacca tcgcggctgg ctttgatttc gataagacgt gccagtttct
      781 ctttcgtgaa tccgctttca tcaactacag tgccgctgga gtctgacgca gtgatcacac
      841 gagcaccaaa ttccatcgct ttttcgatag cgtactgggc gacgttgccg gagccagaaa
      901 cggaaacgcg catcccttca aaacccatac cgtggcgttt taacattgct tctgtgaaat
      961 aaaccagacc gtagccggta gcttccgggc gaataagact accgccaaat gaaaggccct
     1021 taccggtgaa gacgcaggcg gtattgttgg agagcttttt catcatcccc gccataaagc
     1081 cgacttcacg accaccaacg ccgatatcac ctgccggaac gtcagtatcc gcgcccagat
     1141 gacgataaag ctcggtcatc agcgcctggc agaaacgcat cacttcgctt tcgcttttac
     1201 ctttcgggtc aaaatcgcta ccgcctttac caccgcccat cggcagggta gtcagggcat
     1261 ttttgaaggt ttgttcgaag ccgaggaatt tgagaatgga gaggttaact gacggatgga
     1321 agcgcatacc gcctttgtac gggccgatgg ctgagctgaa ctgcacacgc catgcacggt
     1381 tgacctgtac ctggttgcga tcatcaaccc ataccacgcg aaactggatc acgcgctccg
     1441 gttcaaccag acgctccagt aatgacatct ggcgatattt tggattttgt tcaagaaaag
     1501 gccagagtgt ggtcattact tcacgaacgg cttgcgcgaa ctcggtttga ttcgggtcgc
     1561 gcttttggac atggttgagg aatgactcca gagaatatgt ctgatccata gatataaaac
     1621 ccttatatat taatacgatt gtgcttatgt tgtttatgtc atgtgctttt gcagttttcg
     1681 actataccat caagaatgtg acggtaagca agaaaaaaat gacccaggaa agcaaattaa
     1741 taacgagagt aatctcataa ccaaatgcga taactcagac gctaaagttt tgccacccgg
     1801 ctaccgttat cagttgcaga gacaataacg ttaaggagtt ccctgtgagt cgagcattgt
     1861 tcgccgtagt attagcattt ccattaattg cactggctaa cccgcattat cgtccggacg
     1921 tggaggtaaa cgtaccgcca gaagtgttca gttcaggcgg gcagtcagcg cagccctgta
     1981 ctcagtgctg cgtttatcag gatcaaaatt attctgaagg ggcggtaatt aaagccgaag
     2041 aaatactgct gcaatgccag cgggatgaca aaacccttag cactaatccg ctgctctggc
     2101 ggcgcgtaaa gccataaacg cctctaatag tggaatgtca gtaggggcca gcggatattg
     2161 cagcgcctct tcaggtgagc accagaccag cgcctgatgt tcatgtgcct gtaacgtccc
     2221 gtggaagtcg ggtacgtgcc aggcatgaag atggataatc cggcccgaaa cttctcgctg
     2281 atggctggca acatactcac ccacagttgc ttcgatgccc aattcttcgt ttaactcacg
     2341 caccagtgcc tgctgctggc tttcatccag ctcgacttta ccaccggcaa actcccataa
     2401 tcccgcctga tcgctctggg cggggcgttg cgcgagtaaa attttgccat cacgttcaat
     2461 gatggcggca acaacttcaa tcattttcat aaattacaca cgggcagata agcgaaaaat
     2521 gccataatat ccgcactgtt gctcaatcag aaaggcttta tatttaagga gtgcctgtgc
     2581 tagaccgcca tcttcatccc cggattaaac cgttgttgca tcagtgcgtg cgggttcttg
     2641 ataaaccggg cattacgcca gatggtttaa cattagtggg atttgccatc ggcgtgctgg
     2701 ctctgccgtt tctggcgctg ggctggtatc tggcggcgct agtcgtcatt ttgttgaaca
     2761 ggctgcttga tggtctggac ggtgcgctgg cgcggcgcag agagcttacc gacgcgggcg
     2821 gctttcttga tatttctctc gattttctct tttacgcgct ggtgccgttt ggctttattc
     2881 ttgctgcacc ggagcaaaat gcgctggcag gcggctggtt gttgtttgcg tttatcagca
     2941 cgggcagcag ttttctcgcc tttgctgcac tggcagcaaa acatcagatt gataaccccg
     3001 gttatgcaca taagtcgttt tactatctgg ggggattaac cgaaggcaca gaaacgatct
     3061 tactgtttgt gctgggatgt ttattccctg catggtttgc gtggatcttc ggtgcgttgt
     3121 gctggatgac gacctttacg cgggtgtgga gtgggtatct gacgctgaag tcgctccagc
     3181 gtcagtaatt gcaatgttat ttgctactgt ccgggccgcg ttcaccggtt gctaccggat
     3241 tttttggatc gctgctccat tcgtaccagc cgccgtcata cacggaaaca ttcttccaac
     3301 ccatggcgcg tgcgtacata aaggtttcgg acgcgcgcca gccggtgccg cagtagaatg
     3361 aaacttgctg ctctggtttg atattccacg ctttccacat agcggtaata tcatcggcgc
     3421 tgcgcatggt gccatccggg ttatgaaaat cttccatatg cgtcgagtcg ctaccagcgt
     3481 gtccccaacg tgctccggct atttcacctt ttggtttaat atagctgtaa ccgctggtcg
     3541 taccgataaa ttctggccac gaacgaatgc tcaccagcga tgcatcctgg cgatgcagca
     3601 gtccacgggc ctgttccata tcgagcatca actgcggttg tgccgggatc ttcacgccga
     3661 aatccggttc cgctttcact ttcggtggcg ttcctcgctc aacaggcagt cccgcgtcgg
     3721 accaggtttg ccagccgcca tccagcagac gcacatcttt cacgcctgcg tagagcataa
     3781 tttgcgccac acgcgctcca gcgtatacgt cacgcccgta cagaatgacc gtggtgtcat
     3841 ggcgaatgcc gtgttttgcc agcatcgctt ttagttgttc atcagaaact ttgttccaca
     3901 gcggttcgct ttccacttcg ttggtatcga tgtagtcagc accgggaata tggctgataa
     3961 ggtaaagctt aggagcgccc caggccgctt caatgacttt ccagtcaccg gcaggtttcg
     4021 ccgtaacctc tttaccttgt tgcaggtcgt gcagccattg cggataaacc agctgctcaa
     4081 agtgcggcag tttttgtaga cgggaaggtt cgcttagcgc gtcactcaga atggagatat
     4141 gcgtaaaacc tgctttttgc agtcgcgttt tgacggcgtc gacatctttg tcattaccgt
     4201 acagcgccac cggggcatcg gctttcaggt tatgttgctt gatccacgcg ttgagctgtt
     4261 cggtgctcat tttgtcgagc cagctggcag agaggtttaa ggcggcaggt tcatgaccag
     4321 aagggccatt taaggtttgt ggccagccgt tataaaacgc gctggggcga gtatctatcg
     4381 ctttgccatt ttgttgttga agctggtcaa gtgtaagagg cttcgccagt tcagcggccc
     4441 acgaagaagc gcaagccagc cctaaagcca ttgccagcgc ggtcatttga gaaacacgtt
     4501 tcatcgaaaa tcccgacatt gtagttttga gtgcgccatt ctgaactgac gcattgagaa
     4561 aaactttgcg ttatcgcagt ttgttgtaat tttctgacca ctgcgccata tccagaacag
     4621 aactatcagc aggaacatcc tggagatcgt gcgttacctg aacgacgggg atcgccagtt
     4681 cgcgaacttc gctgaacacc cactggcgaa aattatcgcg cagagccaca tcaagacggc
     4741 tgaatggctc atccaggagt aacgcttttg gctgagcgag aagggcgcgc agcagggcca
     4801 cccgcgctcg ctgaccgcct gataatgtcg cagggtcctg gtgataagtt tcagccagtc
     4861 ccgctcgatc aagcgcgtct ttcacggcat tgcgcctggc agtccccttg agcgtcgacg
     4921 gtagcgccag cagtaaattt tgcccgacgc tgaactggtc aaataacagt gcatcctgga
     4981 aaagaatgcc aatctgacgc tgtgcggtgg gtagcatgtc aatccgttgc tcattgagcc
     5041 atagctcacc tgtacaagaa aactgtccag ccagtgcacc aatcatccat gaaaacagag
     5101 tggattttcc acagccagac ggccccatta acgtgacgat gtcaccttta tcaaccgtaa
     5161 agttaacgtt tgtcagcaag cggctttctg gtaaacgtag cgaaacattt ttcacgcaga
     5221 gcattagcgg agtccttgtc tgacataacc tacccatttt gcgactaacg cggtcagggc
     5281 aaaaataata agcggtaaca acagttgcca taaagcctgg gcggcgagaa taccgttgct
     5341 gccgccgctg cttaatgcca ccgcctcagt ggtgagcgtc ggaaaacgcc ccgcgcccag
     5401 ccacagcgtc ggcatatact gcgcaatact gactgaaaat cccaccgcga aggcaatcag
     5461 cacagggcgc aacatgagtg tgcatttcac gtaaaagaag attttggccc gctaccagcc
     5521 cagtgtttgc gcaatcaaaa ttaaccgtga atcaatgcgc tgccaggcgg gttgcaggat
     5581 aaacagcatc cacggcatta cccacagcag atgcccccag accaccgccg tccagcttcc
     5641 atccaggttc agccatagcg ccagcgtgta ctggcccgcc accagtggca gagcgggcaa
     5701 tagaatgggc aaccatagcc acaactggcg acgctgtggc ccccattcca gccacagcag
     5761 taacaggagc aaagcgatga atgttgctac cagccccatt gtcagactgt tgatgagtgc
     5821 ttcactattg atcgtcgact gatccgcgag gatcgccagc agaaccacac acagcacacc
     5881 ggttaagggt aaaaaactcg ccagcgtagt gcctggtaat aaaggtgtgg caggcttgcg
     5941 aatgccatct acgcggggaa tagtgcgccg ccagctgcgc catagcagat agctcagcaa
     6001 aacgtaggcg gcgagtaaca gcatcagcag cagactggcg agtgcgcctt tcgtttgttg
     6061 atccgcgtcg ccctgagtta accactgcca gctaattact gccagcgtcg gtggattacc
     6121 tggcccaaga ataatcgcca catccacgac cgaaagcgac caggcaacaa tcgccagcat
     6181 cgccattgcc agcgaaggcg cgacggaggg caacagcagc cagttcaggc attgccagcg
     6241 gctgtagccc agcgaatcca gcacaatgac ctgctgcaac agccgttttt cgctcaatac
     6301 tgccgctaag atccacagca gaaatgcgct ttctttcact gcaagggtga ggcccagacc
     6361 gatgccaaat cggtccattg gcggagtgaa atacgggaaa tagtcatata gcagccctcc
     6421 gtcagcaaag agcagcaggg cgctggtggc aaaagccaca tggggaatgg cgagcagcca
     6481 cggcagacgg gcgcacatac gctgccattt cggcccaggc catagcgcca caatcaccag
     6541 cagggcaatc aacaatgccc cgaccgccgc gatggttgtc gacaccagcg ttgccagtaa
     6601 tgcatgcggt aactgtggat cggcaaataa cgcctgccag tgtgtcaacg acaacgcagg
     6661 cgatatcagc gtgagagctg ccgggatcag cggtgcataa atcaccgcca ccatcgccca
     6721 cagcaaaaag attaatgcgt accgtaacgg cgtaaccatt cttgttccag tgcattcacc
     6781 catcctgcgt gcggttcagc cagtaccggc ggcagatcct gcggcattct tgattgcaat
     6841 atttcgcgct gcccgtcagg cagtttttgc ggatcgagaa cagaaggatc gtcccagaca
     6901 acgggatctg ctttacgcag ttgcgcatcg ggtgagagca gaaaattggc aactaccttc
     6961 gccgcagcac tggcattcgc gttggctgga atggtgacga aatgcacgtt gccaatcatc
     7021 ccctcgcgaa agccaaaact gtaactgctt gccggcaaat cgccgctggc gattttttgc
     7081 tgcgcatgcg cggggttaaa ggtcagcgac aggcgcaatg tgccggcttt cagcagagca
     7141 tccatccgcg cgggcgaagg cgggaaatcc tttccttcgc gccacaaata cggatgcagt
     7201 gcatcaagat attgccacaa gggcgcagtg acacgggcga aagtcgcatc gtccggcgct
     7261 tcttttaatg cggcgggatc tggcgtcagc ataatcagca actgttcaag aaacgccgtg
     7321 ccggtaaagt ccggtgggcg cggataagta accgtgccgg gattggcttt agcaaactcc
     7381 agtaaggctt gcggcgtttg tggtggctgt ggcgtaacat cgcggcgggc gataaacgtc
     7441 agttgtgcgc cgccccaggg cgattccgca ccttgtgtcg gcactgaaaa atcttcccgc
     7501 accggcagct gtgtgtcgac atagcgccag ttgggcagag tctccgccca gcccgtttgt
     7561 aataaattgg cctcttttaa ggtgcggaag ttttcgccgt tcacccagag cagatccacc
     7621 gagccgcccg ttttacgacc ggcagcagct tcggtctgaa tgcgcttcac cgcgtctgcg
     7681 gcatccgcga gacgaacaat cttcaggttt atagcgtaat gggttttcat ctcgccgcta
     7741 acccagtcga gatagcggtt aattgcggta tcgccgcccc aggcgttaaa ccagacggtt
     7801 tgccctttgg cctcattttt aatttcctgc cagtcactgg catgtgttgc caaagaaaac
     7861 agcgataaca atcccagcaa ccacccacaa tggcgcatct tctctcctta agaacgtttt
     7921 tccggaatac ggcacagccc ctgagcggga atgtccatgg cagaattaaa acgagccgac
     7981 aggttttgca ggccgatcaa tgccgtcagt tcggtgagcg cctgagcgtc aaaatgcgca
     8041 gccagtcggg tacgcagggc atcatcgact gttggcggtg tgacgcttgc ggcttcggcg
     8101 tactccagcg ccagccgttc ttcatcgcta aagagcgggc tttgccgcca gtcagccact
     8161 gccagcagtt tatcggtgct gccggtacgc tcggcgactt tcatactggt gatatccaca
     8221 caaaactcac acaggcacat ttgcgcaatg cgcgcgctga caagcgatcg cactaccgga
     8281 tcgagcggtg agcgtttgcg ctccagccac ccaacaaaca ttgacaccaa ataaaagata
     8341 aacgggatcc gcccccacca gcgaatcggg cttagcacct cgccgtaatg gcgacgatgc
     8401 agccacgcct gcggacgtaa aatgaaagga attttgctaa gcggcggtaa acccatcagt
     8461 cattcctctt ctggcgctca agccatattt tcttcgccat aaaaatcacc acggtcaggg
     8521 caaacagaat aaacagtccg gtgacaaacc agaaagtacc gcctgttaac atgctgcccg
     8581 cccaggaata aacaatagtc gccggtaatt gaccaagccc ggtggagata aaaaacgagc
     8641 gaaaacgtat tgaagtcaga ccggcagcat agctgattgg atcgaaaggg acaaaaggca
     8701 ataaccgaca gaccaggatg gtgtgtttgc cgtagcgagt gaaaaagccg tccatactgt
     8761 caagcacggt tttgccggtt aatttttcca ccacttcgcg gcccatcact ctggcgataa
     8821 aaaagcacag cgccgcgccg gccatcgaac tggtccacga cagcaagccg ccccagaacg
     8881 cgccaaacag cgacgcattg gcaaaggtga tcaaaaacgc aggtagcggt gcagcaatgg
     8941 cctgtaaaat catcaacaag aacgagacaa ctgccgccag tgcgccgtaa gactgaataa
     9001 agcgttctat accctgttgg tccacggcgg caaacgccgc aacgctgcga ttgataaact
     9061 catggacgcc gggaagcagc gcccatgcga gcagcatagc gaacaacagg atgatgaggg
     9121 ttatacagta gtaccagatt ttacgcgatt gcatcttcat catcctttat cctggcttta
     9181 ttcggtgatt ttaaaggtaa ccgttgccag cgtgttatcc gccgggagaa ctgaggcatt
     9241 gcctttgaat ttcacttcgc cgcgtttttc caccgcacca taagtgtatg ttgcattgct
     9301 gacgatgccg accgggcagc tatccagaca caccagtcaa cccgttttct tctcttctgc
     9361 tgccgttaaa ttaccgccaa agcgcatgtc cagtttcttg ccattactgt caacaatcac
     9421 ttcatcgaag gaatacgctt ttgccgcccc ttgccagttg accgaaatat ccagtttgct
     9481 gcctgtgaca tgagtcgttt ctttattatc catcgtcatg ttttcgcccg gcgtaccacc
     9541 tgcctctttc agggcttcat aaaatgcttt cggggtcgca taagccataa acagcgattt
     9601 atgtccgttg gagccatctt taaacacaat accgtgacga gtgtcgtcgg tgaggaaacg
     9661 accattaatt tgcaccagca tggttaccgt atggttattg gcatcgacgc gcagcggttg
     9721 gctgttcgaa agtccgtcgt attccacttt tgccgccgaa ttctcttttt gatcgcagcc
     9781 gctaagcccg gcaacagcca gtaagcagag tgcagccagt ccttttttcc atgacactga
     9841 ataatgttgc gacatcgttc tatccttcat tttttgggtg agtaagcggg ctgcggcgcg
     9901 aagcagacag atccacatgt ttgtgtcggg cgtagagttt tgcgagctgg acgagaataa
     9961 acagcgccag gcccgccaga cagagttgta aaataaagcg c
//
LOCUS       DAJVUP010000157         9973 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.157, whole genome shotgun sequence.
ACCESSION   DAJVUP010000157 DAJVUP010000000
VERSION     DAJVUP010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9973
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.157"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            164..421
                     /locus_tag="OQQ75_003482"
     CDS             164..421
                     /locus_tag="OQQ75_003482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000177060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977681.1"
                     /translation="MTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFP
                     LAKKGEGRARLPSLYASFGKLGETPTHEDIIDNNRSINWPV"
     gene            complement(979..1746)
                     /gene="fecE"
                     /locus_tag="OQQ75_003483"
     CDS             complement(979..1746)
                     /gene="fecE"
                     /locus_tag="OQQ75_003483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter ATP-binding
                     protein FecE"
                     /protein_id="HCS1977682.1"
                     /translation="MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTL
                     LNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRN
                     PWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVV
                     LLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMA
                     QGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCLMR"
     gene            complement(1747..2703)
                     /gene="fecD"
                     /locus_tag="OQQ75_003484"
     CDS             complement(1747..2703)
                     /gene="fecD"
                     /locus_tag="OQQ75_003484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter permease
                     subunit FecD"
                     /protein_id="HCS1977683.1"
                     /translation="MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHY
                     YVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLL
                     MPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSR
                     PQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLG
                     VSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTG
                     ALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR"
     gene            complement(2700..3698)
                     /gene="fecC"
                     /locus_tag="OQQ75_003485"
     CDS             complement(2700..3698)
                     /gene="fecC"
                     /locus_tag="OQQ75_003485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter permease FecC"
                     /protein_id="HCS1977684.1"
                     /translation="MTAIKHPMLLWGLPVAALIIIFWLSLFCYSAIPVSGADATRALL
                     PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGTLLQTLTHNPMASPSLLGINSGAA
                     LAMALTSALSPTPIAGYSLSFIAACGGGVSWLLVMTAGGGFRHTHDRNKLILAGIALS
                     AFCMGLTRITLLLAEDHAYGIFYWLAGGVSHARWQDVWQLLPVVVTAVPVVLLLANQL
                     NLLNLSDSTAHTLGVNLTRLRLVINMLVLLLVGACVSVAGPVAFIGLLVPHLARFWAG
                     FDQRNVLPVSMLLGATLMLLADVLARALAFPGDLPAGAVLALIGSPCFVWLVRRRG"
     gene            complement(3695..4597)
                     /gene="fecB"
                     /locus_tag="OQQ75_003486"
     CDS             complement(3695..4597)
                     /gene="fecB"
                     /locus_tag="OQQ75_003486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter
                     substrate-binding protein FecB"
                     /protein_id="HCS1977685.1"
                     /translation="MLAFIRFLFAGLLLVISHAFAAMVQDEHGTFTLEKTPQRIVVLE
                     LSFADALAAVDVSPIGIADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDL
                     IIADSSRHAGVYIALQQIAPVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQH
                     KERMAQWASQLPKGTRVAFGTSREQQFNLHTQETWTGSVLASLGLNVPAAMAGSSMPS
                     IGLEQLLAVNPAWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVASVDSNTWARMRG
                     IFAAERIAADTVKIFHHQPLTVVK"
     gene            complement(4642..6966)
                     /gene="fecA"
                     /locus_tag="OQQ75_003487"
     CDS             complement(4642..6966)
                     /gene="fecA"
                     /locus_tag="OQQ75_003487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate transport protein FecA"
                     /protein_id="HCS1977686.1"
                     /translation="MTPLRVFRKTTPLVNAIRLSLLPLAGLSFSAFAAQVNIAPGSLD
                     KALNQYAAHSGFTLSVDASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSW
                     TLEPAPAPKEDALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRI
                     PGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPIS
                     LGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPK
                     ETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLL
                     QYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGF
                     YTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYVNESTHE
                     MRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQ
                     NNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVE
                     PEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQAR
                     YDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTF
                     NLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKN
                     IFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF"
     gene            complement(7053..8006)
                     /gene="fecR"
                     /locus_tag="OQQ75_003488"
     CDS             complement(7053..8006)
                     /gene="fecR"
                     /locus_tag="OQQ75_003488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fec operon regulator FecR"
                     /protein_id="HCS1977687.1"
                     /translation="MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQ
                     DNQWAWQQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSE
                     TGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTA
                     KDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNA
                     GESLQFSASEFGAVKPLDDESTSWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVA
                     GLRLSGTFPLKNTDAILNVIAQTLPVKIQSITRYWINISPL"
     gene            complement(8003..8524)
                     /gene="fecI"
                     /locus_tag="OQQ75_003489"
     CDS             complement(8003..8524)
                     /gene="fecI"
                     /locus_tag="OQQ75_003489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FecI"
                     /protein_id="HCS1977688.1"
                     /translation="MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQD
                     TFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPE
                     ERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA
                     VEHCLLFRLEYGL"
     gene            8822..9004
                     /locus_tag="OQQ75_003490"
                     /pseudo
     CDS             8822..9004
                     /locus_tag="OQQ75_003490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012767718.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            8998..9102
                     /locus_tag="OQQ75_003491"
                     /pseudo
     CDS             8998..9102
                     /locus_tag="OQQ75_003491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612091.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            9442..9699
                     /locus_tag="OQQ75_003492"
     CDS             9442..9699
                     /locus_tag="OQQ75_003492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm development YmgB/AriR family protein"
                     /protein_id="HCS1977689.1"
                     /translation="MHSDYYNMVFGEKLANILYEANSQFFYERNVIEEAVNALFCERE
                     IINNKNIIKKLMFFLSDVNHTKKDVVQSALNIIIDITSGDI"
BASE COUNT         2314 a         2657 c         2728 g         2274 t
ORIGIN      
        1 gaatataatg gtgggttacc accaaacgaa tcagaaaacc gatactggaa aaactctaac
       61 gcggaggcca gttttagttg accacaacag actacctgaa gggagccgcg gtcgcctagc
      121 agttgcagta gcaggagatc atccagccgc agtacaggtc acgatgactc tggttaatga
      181 taccggcttt gaccccgtat tttccggctc tatcgctgaa tcatggcgtc agcagccgtg
      241 cacaccatcc tattgttgtg actgggaggc tgccaccatg cttcgcgctt tccctctggc
      301 gaaaaaggga gaaggacggg cccgtctgcc ttcactttat gccagcttcg gtaagctggg
      361 tgagacaccg actcatgaag atatcattga taacaatcga tccatcaact ggcctgtata
      421 acgtggctgc cggtgattaa gaaagctgca cctacctaag tagtagcaaa cgcacacttt
      481 ttagaaaaat cgatggtcag aaactggatt agcaattccg ttccagggtt gcttttgatt
      541 tacgttggcg tctgatcatt gatttatcct caaaagccca acctcattgg taatgaacca
      601 gctccgtgaa tgtccgctct ggcacagagc gaaatttttt gatctccccc cctgaaatct
      661 aaacttagtc atgtcacgtt tttgggtttc taaaatttta acttcgcgtt tttcgttgcc
      721 gtaagggtta tacagaaatg tccgttaagc agagttcaaa attgattgcc gtgatcacga
      781 ctggtttgaa agccgcgccc aagcctgtac agctctggtt tgcgttgatt atgaacctgt
      841 cagcctaaag caagcggatg gacgatgagt attggtaatc tttcagagtc cggaaaagtt
      901 cagccccagt ctgaacaggc ttgctggcgc cagtccagtt tcattcagtc gtggtttggt
      961 tcttacggcc tgtgcaatct acctcattag gcacatcggc ctgccagata ccggctcggg
     1021 gtgtatttcc gcttccacgc tgaatactgt tctcagcaat cctggggtca tcacctcttc
     1081 tggtgtgcct tgcgccataa catgtccgtt tgccattacc accagttgat cgcagtaccg
     1141 gctagcctga ttaaggtcgt gcagcacagc gaccaccgtt ttcccctgag tccggagttc
     1201 gcccatcaac cgcatcaggt ccacctggtg attgatatca agataggtgg ttggctcatc
     1261 aagtaataca acgggcgtat tctgggccag gaccatcgcc agaaatgcgc gctggcgctg
     1321 accgccggaa agctcggtta accgacgaac ggcaagatga ttgatccggg tctggttcat
     1381 ggcgacatta actcgtgcat tgtcttcagc ggagagacgc ccccagagtg acagccaggg
     1441 attacgacca tacgaaacca gctcctggac tgtgatcccc tctggcgtta aatggtgctg
     1501 aggcagcagc gaaagcctgc gggccaactg gcgtgatgag agcatattta tgggattatc
     1561 gccgagaaat acggtgccag actgcggcat taaaagccgc gaaaaacagt ttaacagcgt
     1621 cgatttcccg caaccgttag ggccgatcag ggcggtgatc ttccccgttg gcagtgagag
     1681 tgaaacgtcg ttaagtacct tgtctgtccc gtaactgacc gtcagatttt cagttcgtaa
     1741 agtcatttat cgcattctca caagcaacca gacaaaccac ggcgcaccga taatggcggt
     1801 cagcacgcca accgggagct ccagtggggg atgaataatt ctcgccagca gatcggcaac
     1861 caccaacagc aacgcacctg tcagggctga aacaggcagc agtctgcggt gacgtccacc
     1921 ggtgatgcta cgcatcatat gcggcaccac gagaccaata aagctaatcg ggccgcaggc
     1981 ggccacgccg gtagatgtca tggcgacagc tagtaacaaa gcccagaatc gggtatgggg
     2041 caccgacaca ccgagcgtgg tggcgcgcgc atcgccgagt gcaaggaggt cgagatcgcg
     2101 gcaaaaactc aggctcagcg gcagaaataa aatcatcagc gggatggcaa tcttcacaaa
     2161 gctccagtca cggccccata agctgccggt cagccacagc agggcgttgt tcacatcctg
     2221 cgggcgcgag agcatcagat aatccgtcag gctggcccag catgcagaaa gcgccacgcc
     2281 ggtgagcgcc agcttcatcg gctggtgggt ctttgccagc atcttcagta atatcaaccc
     2341 cgccatgccg cccgcaaagg ccagcagcgg cagcaccatc acgggcagtg acggcataag
     2401 aagtagagcc cccacagagg ccaggctggc ggcatggtta acgccgagaa tatccggtga
     2461 tgccagaggg ttgcgcacaa tcccctgtat cagcacgccc gccacggcga gggctgcacc
     2521 gacaaacagt gccagcagca agcgcggcag tcggtactcc atcaatacat aataatgctc
     2581 gcgtccggcc tgccagtcgg tcagcagcgc gcgccacggc acggggatca ctcccatatg
     2641 gagtgataac agcgcacagc ccgccagggc aagggtgatg aaaataacca gcgcaatttt
     2701 catcctcgcc tcctcacaag ccagacaaag caagggctgc caatcagcgc cagcactgcg
     2761 cctgcgggca gatctccggg gaaggccagc gcgcgtgcga gtacatctgc cagcagcatc
     2821 agcgtggccc ccagcagcat gctcactggc agtacgttgc gctgatcgaa gcctgcccag
     2881 aagcgcgcca gatgtggcac cagcagaccg ataaacgcca ccggacctgc cacgctgacg
     2941 cacgcaccaa ccagaagcag cactaacata ttgatgacca aacgtagcct cgtcaggttc
     3001 actcccagcg tatgggcggt gctgtcgctg aggttgagca ggttcagttg attcgccagc
     3061 agtaacacga cagggactgc agtgaccacc accggcaaga gctgccagac atcctgccag
     3121 cgggcgtggg acactccgcc tgccagccag taaaagatgc cgtaagcatg atcttcggcc
     3181 agcagcaggg tgatgcgggt aaggcccata caaaaggccg acagcgcgat acccgcgagg
     3241 atcagtttgt ttctgtcatg ggtatgacga aatccgcctc ctgcggtcat gaccagcagc
     3301 cagctcacgc cgcccccgca tgccgcgatg aacgacagag aatagcctgc aatcggcgtc
     3361 ggactcagcg cgctggtaag cgccatagcc agcgccgcgc cgctgttaat gccgagcagt
     3421 gaaggagagg ccattgggtt gtgggtcagg gtttgcagca gcgtgcccgc gagcgccagg
     3481 cttgcgccga tcagaacggc gaccaggctt cgtggcaaac gaaggttttg caccagcgct
     3541 tctggtagcg ttggcgtgtg tccaggcagc agggcgcggg ttgcatctgc tccggaaaca
     3601 ggaatggccg agtagcaaaa cagactcagc cagaaaataa taataagtgc tgcaacggga
     3661 agcccccaca gcagcatcgg gtgttttatc gcggtcattt cacaacggta agcggctgat
     3721 ggtggaagat ttttaccgtg tcagcggcaa tacgctctgc agcaaaaata ccgcgcatcc
     3781 gcgcccaggt gttactgtcg accgaagcaa cctgctgctt ctgcgcggcg gttaacatct
     3841 gccagagcgg atcttgttgc cagcgtttaa caatgctctc ttcgcgatag tgggcaacca
     3901 gcagccaggc aggattgacc gccagcagtt gctccaggcc gatggacggc atggacgaac
     3961 ccgccatcgc agcgggaacg ttcagcccca gagaggccag cacgctgccg gtccaggtct
     4021 cctgagtatg caggttgaat tgctgttcgc gtgatgtgcc aaaggccacg cgtgtccctt
     4081 tgggaagctg gctggcccac tgcgccatcc tctctttatg ttgttccaga cgtgcctgca
     4141 tctctcgctt tttacccacc atttcgccga tgatagccgc agattgcaaa ttttcagcgt
     4201 aggtttcgtt gcgggactta agcagcagta ccggcgcgat ttgctgcaag gcgatgtaaa
     4261 cccccgcatg gcgactgctg tcggcaatga tcaggtctgg tttcagagcg gcaatggctt
     4321 ccaggctcgg ctgcgcgcgc gttccgacgg actgccacgg tttcaggtgc gcacgcactt
     4381 cgggcaggat gcgttttgca tcgttatcgt cggcaatacc gatcgggctg acgtccacgg
     4441 cggccagcgc atcggcgaac gagagttcca gcaccacaat ccgttgtggc gttttttcga
     4501 gtgtaaacgt gccgtgttcg tcctgaacca tggcggcaaa ggcgtggctg atcaccagca
     4561 gcaggcctgc aaaaagaaaa cggataaatg ccaacataat cacattccag ctaaaagccc
     4621 ggcaagccgg gcgttaacac atcagaactt caacgacccc tgcatataca gcgtgcgcgg
     4681 ctggcctgca tagatgcctt tgttgttgtc gtcataagag cggatgaagt agtcctggtc
     4741 gaagatgttt ttcacaccga atgccaggtt cagatctgcc atctgcgggc caaagtcata
     4801 cgccacgcgt gcaccccaga gcatgaagcc gggaatgcgg ccggtactgc cgtcggcgct
     4861 ctctttcacc gtattggcgt tatccgcaaa ctggctggac tggaaatcgc tgttcagatt
     4921 gaacgtccag tttcctggct tgtagtccac gcccagcgtg cctttatgtt tcggggagaa
     4981 tggtaccaga ttgccgtagg tgtcgccttt ctcgcggatt tccgcgttca catacgcata
     5041 gctggcgtag atggaaacgt tatcaagcgt tggcgttagc gtacccagat cgtaacgtgc
     5101 ctgcgtttcc agcccggtat ggcgcgtttt gccacgtgca gtgacggtgt cgttggtctg
     5161 gttggagtcg tactgattgt taaagttaat caggaacagc cccatttccg ccgtcagcgc
     5221 gccgtcgtcg tagcgggtac cgagttccca ggttcgcgct ttttccggtt ccacattgcc
     5281 gctttgcaca gccttgccaa tctggctgta ctgtacggtg ccgaacgagc cttcagtgtt
     5341 tgcataaaga ttccagctgt cagtcaggtg atagagcacg ttcaacgccg gaagcggtgc
     5401 gttatagctc acttcttcgt gcgtgcctgt gatggcgttg ttctggtatg actcgatatg
     5461 ttcgaaacgc atacccggcg tgatggtcca gttgccgatg tcgattttgt catccagata
     5521 ccaggcgtgc gcctcggtgc cggaacgcgt atcgcggtcg taagggcttg agccggacgg
     5581 caactgcccg ctgctggtgg cggtgtagta acgcatttca tgcgttgatt cattcacata
     5641 gcgatagccc acgcccactt cgtgcgcgga agggccgatc ataaagatct ggctgtagcg
     5701 tggctcaata ccgcgcaccc agtagttacg cggcgagagg gtgatgcgtt tgccttgctc
     5761 caggtagccg ctgcgcaggg tttgggtgta gaacccctga atgttgaatt tatgctggct
     5821 gtctggctgg aactggtagc ccaggctcgc cagcttgcga cgaccccaga agcggtcata
     5881 cgggcgggtg gattgccagc gatcggcgtc gtaatccgcg cgagacaggc caccgggcat
     5941 gtcggcttca ccgtcgtaat attgcagcag gctgttgaag gtgtgcacct catccggcgc
     6001 atatttgctt ttcagcatca ggtcgtcgat gcgggtggcg ctgtgctcgc gccagtcact
     6061 gccgcgcgtg ccggagtaga gcagcgcggt gccaaaaccg ttgtccgctg tgccgcccac
     6121 catcaggttg tgcgtctctt tcgggttgtt ttgtgaagag gttgggctga gctgaccttc
     6181 cacgcccgcc tcgataccaa agtcctgcgg aatggcacgg gtaacaaagt tcaccacgcc
     6241 gcccacgctc tgcggtccgt aacgcaccgc accaccaccg cgtaccacgt caatggcatc
     6301 catgttgccg agcgaaatgg gagccagtga aagctgcggc tgaccgtaag gggcgaaggg
     6361 gacggggatg ccgtccatca ggacggtcga gcggctggcg aggcgcgggt tcaggccccg
     6421 gatgccaaag ttcatcgcca ggtcgtggct gccggtgccg ttgttttccg gcgcgctgac
     6481 gccagggatg cggttaagta cctcacgcat ggtggttgcg ccggttttgg cgaaatcctc
     6541 acggcggatc acgtcacgcg cgccagcatg ttcaaatacg tcgttttcac gcgcatcacc
     6601 cagccagtcg ccgaccacgg tcagggcatc ttcttttggt gcgggcgcgg gctccagcgt
     6661 ccagctgtta tttcccagcg gttttacctg cagtccgctg ccgtccagca gttgttgcag
     6721 gccgctctcg acgtcgtaat cgccgtgcag gccgttgctc tgcttgccgc gcgtcaggct
     6781 ggcgtcaacc gagagggtaa atccgctgtg tgcggcatac tgattgagcg ctttatcgag
     6841 cgatcccggt gcgatattaa cctgtgcagc aaaagcggaa aacgagagac cggccagcgg
     6901 cagcaggctc aggcgaatgg cgttaaccaa aggtgttgtt ttacgaaaaa cgcgtaacgg
     6961 cgtcatacct tccccatcat catttttgtt gtgttcagct atgagtcgaa cgagaagggt
     7021 aaaaaggaca atcgaaataa gaattatttt ccttacagtg gtgaaatgtt tatccagtac
     7081 cgcgtaatag actgaatttt aacgggaagc gtttgcgcga taacgttcag gatcgcatcg
     7141 gtatttttca gcgggaacgt cccgctcagg cgcagcccgg caacggcggg atcgcagcgc
     7201 agcacgccgt tgcggtaacg ggttagcgtg gctatcacct cacccagcgg tttatcgctg
     7261 aagctcagga tgtccttcgt ccagcttgta ctctcgtcat ccagcggttt cactgcgcca
     7321 aactcagagg cgctgaactg caggctttca ccagcgttca cgatgcgttt ttgcgcgggg
     7381 gcactggcga gaagcacttc cacagcgtgc tgctgaacgt caagctgcgt gaaattatcc
     7441 tgctggcgga cggtaaattc tgtccctaaa gcagtgagct ggccctgacg ggtcaggaca
     7501 cggaaggggc gttgcagggc atctttcgcg gtagtaatgg cgatttcacc gtaccagagc
     7561 cggacggtgc gctgatgcgc atcaaaacgc acatccgccg cgctttgggt attcagcgtg
     7621 agcagggagc catcttccag ttgctgacgg ctgactgtgc ctttggcggt gcggtaatct
     7681 gcccgcagac cttcgccggt ttccgactgc cagagctgcc agcctccgcc agcgccgagc
     7741 aacagcagta atcctttcat cacgtgacgg cgggtgaggc gggtatcgtg caacgcccgg
     7801 ctggcaacgt cgccaggcac accgccaagc tggttgcgca ggttttcaac ctgctgccag
     7861 gcccactggt tatcctgatc ctgttcatac cactgttgcc agcgcgcttc ctgttgtggg
     7921 ctgacgcgct cgccgcttag cacggcatac cagtgggaag ctgaacgcag cgcctgacgg
     7981 cgggaatcgg ttaacaaagg attcataacc catactccag acggaacagc aggcagtgct
     8041 cgacggcttt cgccacgtat tttttcacgg agctgatgga aacaccgagt ttgtgcgcaa
     8101 tctcgctgta tgtcagacca tccagttgcg aaagcagaaa cgcttcacgt gttttgccgt
     8161 ttagcccgtc cagcatgctg tcgaggagtt gtagggtctc gagttggctt tcgcgttcct
     8221 caggtgaagg cgctcccccc tccggcataa gcgccagcat ctccagatac gctttttcca
     8281 gcgcgtttcg gcgaaacagg tccaccatca cgcgtttggc gatagtgcag aggaaggagc
     8341 gaggatcgcg gatcgtcgag agcgtttcgc tgaccattac ccgcaaaaaa gtgtcctggg
     8401 caatgtcatc tgcatcaaaa gcagactgga gtttgcgcgt cagccagctt ttcaaccagc
     8461 cgtgatgtgt gccataaagc gactcgaacg ttaaggaagc tgtggtagtg gcgcggtcag
     8521 acatgcggag tgcatcaaaa gttaattatc acgtagtcat attaatatga gaatggttat
     8581 cattacaatt ggaaataaaa ttgtttccaa tagacatttt taacatgttg tttttctaag
     8641 tgttataagg taggtataaa atgggatgga gcctctgctt ctgacatgtg tcggtcagaa
     8701 tgactcatga tgtggtctgc tattattgac atcctcactg ccctaaagga tggggatttc
     8761 ggtaatgatc ttacccagca atagtggaca cgcggctaag tgagtaaact ctcagtcaga
     8821 ggtgactcac aagacaaaac agtttcaacc agtaaaaaaa cgtaaacacc attcgcatga
     8881 atttcgtagt taagatctga agcttgcaga atgcatcggt gttactgccg gagtccgtga
     8941 acttagtctg catgaatcac cacagcttta catctgtcgc agtaaacagc aaaatcagca
     9001 aacttactta attatatcga gtgcgattac aatcgctggc gatggtacag ttggtgtggc
     9061 ggtctcagtc cggaacaatt tgaaaatcat aatctcactt aaaacggcat ccattttaca
     9121 aaagatggcc gtctgtgtat ttgtaatgaa taccttctac atgtttagag tgcataatcc
     9181 acgacaaggc gatatcctaa aaattagcta gcaggcaact ttgatggcat agataatgtt
     9241 tttagtaaaa aagagttgac tgaatataat acagcctctt cctacataag aaggaatgtg
     9301 ctcacaaaaa aaaaccatta gtctgcttcc tgttcttaca ataatcagta ttatgtattt
     9361 tatttatata gcaaaatatg cttgttacac ctgtcataat taggcatggt aaaattattg
     9421 actgaaccct gggggagaaa gatgcacagt gattattata atatggtttt tggtgaaaaa
     9481 ttggccaata ttttatatga agctaactct caattttttt acgagagaaa tgtcatagaa
     9541 gaggcagtca acgctttatt ctgtgagcgt gaaataataa acaacaagaa cataataaag
     9601 aagctgatgt tctttttgtc agatgttaat cacaccaaga aagatgttgt tcagagcgca
     9661 cttaatatta tcattgacat tacatcaggt gatatttgag attttacata aaagataatc
     9721 tctcaaggag tcttatctga aaacgaaata tatagtccct ctcgttttgt aatatcgatt
     9781 ggctttgttg aatcggttac gtaccccgga gccggtcata ttttcaggta atacacacgc
     9841 tttcagacat ttcggctttc gtcatttttg tatcatgggc atagcttctg ctacctgacc
     9901 atcataatca cgcagcttca gtgaagcagt gaccacctgt ttaacccggt gtatcgttat
     9961 gatcttatcc agc
//
LOCUS       DAJVUP010000158         9946 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.158, whole genome shotgun sequence.
ACCESSION   DAJVUP010000158 DAJVUP010000000
VERSION     DAJVUP010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9946
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.158"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            249..446
                     /locus_tag="OQQ75_003493"
     CDS             249..446
                     /locus_tag="OQQ75_003493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977690.1"
                     /translation="MEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSK
                     VMIISLFDSTVMPDKYRHNGK"
     gene            complement(396..1589)
                     /locus_tag="OQQ75_003494"
     CDS             complement(396..1589)
                     /locus_tag="OQQ75_003494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1977691.1"
                     /translation="MSPGIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTN
                     LSLSVWAALLMLGSMLFLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLM
                     ATSAITTAVGLGILIIARIAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC
                     GRLFGPLCAAAMLAIHPLAPLGLLMAAPVLALLMLLRLPGTPPQPTPECKSVSLKRDC
                     LPYLLCAILLAAAVSMMQLGLSPALTRQFVTDTTAISQQVAWLLGLSAVAALIAQFGV
                     VRPQRLTPVALLLSAGVLMSGGLAIMLSEQLWLFYPGCAVLSFGAALATPAYQLLLND
                     KLADGAGAGWLATSHTLGYGLCALLVPLVSKTGVAIALIMAALFATILFTIVSVFIWH
                     YRTIK"
     gene            1725..3449
                     /gene="iucA"
                     /locus_tag="OQQ75_003495"
     CDS             1725..3449
                     /gene="iucA"
                     /locus_tag="OQQ75_003495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001314127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucA"
                     /protein_id="HCS1977692.1"
                     /translation="MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELLIPLDE
                     QKSLHFRVAYFSPTQHHRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLC
                     ETFHQRVLESHVHTQQAIDARHDWAALREKALNFGEAEQALLTGHAFHPAPKSHEPFN
                     RREAERYLPDMAPHFPLRWFSVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDN
                     QWLFPLHPWQGEYLLQQGWCQALVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIK
                     FSLSVRLTNSIRTLSVKEVKRGMRLARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDL
                     NGNIMQESLFALRENLLVDQPKSQTNVLVSLTQAAPDGGDSLLVSAVKRLSDRLGITV
                     QQAAHAWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILVQMLGDLPVGFIYRDCQGSA
                     FMPHATDWLDSIGEAQAENIFTHEQLLRYFPYYLLVNSTFAVTAALGAAGLDSESNLM
                     ARVRASLAEVRDQVTHKTCLNYVLESPYWNVKGNFFCYLNDHNENTIVDPSVIYFDFA
                     NPLQAQEV"
     gene            3450..4397
                     /gene="iucB"
                     /locus_tag="OQQ75_003496"
     CDS             3450..4397
                     /gene="iucB"
                     /locus_tag="OQQ75_003496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(6)-hydroxylysine O-acetyltransferase"
                     /protein_id="HCS1977693.1"
                     /translation="MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGW
                     LCDALDQIFIAAPQLSAVALPWAEWREEPQALTLFGQVKSDIIHRTAFWQLPLWLSSP
                     ANRASGEMVFDAEREIYFPQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRW
                     MNDPRVEYFWEQSGSLEVQTAYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIG
                     RHYSWQPFDRGLHLLVGEQQWRGAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQR
                     LFRHLEPAGYRTIKEFDFPHKRSRMVMADRHHFFTEVGL"
     gene            4397..6139
                     /gene="iucC"
                     /locus_tag="OQQ75_003497"
     CDS             4397..6139
                     /gene="iucC"
                     /locus_tag="OQQ75_003497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucC"
                     /protein_id="HCS1977694.1"
                     /translation="MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGA
                     QWRFIAERGIWGWLWIDAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYAT
                     LLGDLQLLKARRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY
                     TNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPL
                     PVHPWQWQQKIATDFIADFVEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL
                     TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA
                     ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLD
                     AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLV
                     KEAFPEMDSLPQEVRDATSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQ
                     LLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEN
                     LQNPLWLVTQEYES"
     gene            6136..7473
                     /gene="iucD"
                     /locus_tag="OQQ75_003498"
     CDS             6136..7473
                     /gene="iucD"
                     /locus_tag="OQQ75_003498"
                     /EC_number="1.14.13.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent L-lysine N(6)-monooxygenase"
                     /protein_id="HCS1977695.1"
                     /translation="MKKSVDFIGVGTGPFNLSIAALSHQIEELNCLFFDEHPHFSWHP
                     GMLVPDCHMQTVFLKDLVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDY
                     LRWAAEDMNNLYFSHTVENIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVK
                     HVTQSCFHASEMNLRRPDLSGKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRN
                     NFNALDEAAFADEYFTPEYISGFSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELY
                     HRFEVLRKPRNIRLLPSRSVITLESSGPGWRLLMEHHLDQGRESLESDVVIFATGYRS
                     ALPQILPSLMPLITMHDKNTFKVRDDFTLEWSGPKENNIFAVNASMQTHGIAEPQLSL
                     MAWRSARILNRVLGRDLFDLSMPPALIQWRSGSRKKPQPEAASLTHYTANIQE"
     gene            7479..9674
                     /gene="iutA"
                     /locus_tag="OQQ75_003499"
     CDS             7479..9674
                     /gene="iutA"
                     /locus_tag="OQQ75_003499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709458.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric aerobactin receptor IutA"
                     /protein_id="HCS1977696.1"
                     /translation="MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAE
                     MAQTTWVIENAELEQQIQGGKELKDALAQLIPGLDVSSQSRTNYGMNMRGRPLVVLID
                     GVRLNSSRSDSRQLDSVDPFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMME
                     FEAGTKSGFNSSKDHDERIAGAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQ
                     TGLQHSNRLDIMGTGTLNIDESRQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPY
                     VSKGLNSDRIPGTERHLISLQYSDSDFLGQELVGQVYYRDESLRYYPFPTVNANKQAT
                     AFSSSQQDTDQYGMKLTLNSQLMDGWQITWGLDAEHERFTSNQMFFDLAQASASGGLN
                     NHKIYTTGRYPSYDITNLAAFLQSSYDINDIFTVSGGVRYQYTENRVDDFIDYTQQQK
                     IAAGKAISADAIPGGSVDYDNFLFNAGLLMHITERQQAWFNFSQGVALPDPGKYYGRG
                     IYGAAVNGHLSLTKSVNVSDSKLEGVKVDSYELGWRFTGDNLRTQIAAYYSLSNKSVE
                     RNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWSTGVNFNVLKTESKVNGQWQKYDVKE
                     SSPSKATAYINWAPEPWSLRVQSTTSFDVSDAEGNDINGYTTVDFISSWQLPVGTLSF
                     SVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRGRTFGLNYSVLF"
BASE COUNT         2388 a         2562 c         2645 g         2351 t
ORIGIN      
        1 atgtcagtga aaaagaaacc tggcgttggg ttgaaggata taataaagca acagaactgg
       61 ctcgccaatg ccctgatacc catgtattgt caatttctga tcgtgaaggc gatttttatg
      121 acctgtttga acgcgcagag cagactcccg gaataaaagc tgactggctt gtcagaatga
      181 aatttaataa cagagcaacg ctgaatatta atggtaaacg ggatcatagg ttgttgcacg
      241 aaagaatcat ggagattaca ccgcagcaac tggttgaatt cactatacct gatgggcggg
      301 ggcagcaagc cagaacactg cctgacatgc tttcatcaga cgcaggtcct ctctcatatc
      361 ctctgattta ctccagtaag gtgatgatca tatctttatt tgatagtacg gtaatgccag
      421 ataaatacag acacaatggt aaataatata gttgcaaata atgctgccat aatcagcgcg
      481 attgcgacac ctgttttcga taccagcggc accagcaaag cgcacagtcc atagccaagt
      541 gtgtgactgg tagcgagcca gcccgcgcct gcgccatcag ccagcttatc attcagtaga
      601 agttgataag cgggtgttgc cagagctgct ccaaatgaca gcactgcaca gcccgggtaa
      661 aacaaccata gctgttcgga gagcatgata gccagaccac cactcatcaa cactccggca
      721 ctcaggagca gggccaccgg agtcaggcgc tgcggacgga ctaccccgaa ctgcgcgata
      781 agcgcagcta ctgcggacag acccaacagc caggccacct gttggctaat ggcggtggta
      841 tccgtgacga actggcgagt aagggcaggc gaaagtccaa gctgcatcat gctcaccgcc
      901 gcagccagta atattgcgca aagcagataa ggcagacaat cccgcttcag actgacgctc
      961 ttgcactccg gtgtgggctg tggtggtgtg ccgggcaacc gcagcagcat cagcagcgcc
     1021 agcactggtg ctgccatcag tagccccagt ggcgccagag gatgaatggc cagcattgct
     1081 gccgcgcaca gcggcccgaa tagcctgccg caactcaggc cggagctgat ggttgccaga
     1141 gcggccatgc gattcccttc tccagctctc tgcaatgccc agacctgaca ggctggcacc
     1201 attgccgaca cggtcagccc gtaggcgatc cgggcgatga ttaatattcc cagtcccacc
     1261 gctgttgtta tggcgctggt agccatcagc acgcttccca gccctagcag ggtaaagctt
     1321 atgccatatc ctcccagagc ccacaacacc acaggtttac tgccagtacg ggaaatttgc
     1381 tttccccacc acggggacga tggcagaaac agcattgagc caagcatcag cagggcagcc
     1441 catacagaca gactcagatt tgtctgtatg accagaacag ggagcacaac cagcagaccg
     1501 ttctgtccga taccgagaag cccggcactg aacgcaagtg gccagcagga cagtgttttt
     1561 tggggcgtat cttcgatccc tggtgacatt ataatgcttc aactccatgt attaattgtg
     1621 tttatttgta aaattaattt atctgacaat aacatttatt gttgataatg agaatcatta
     1681 tcgacataat tgttattatt ttactgtgtg ggagctgttt gactatgacc ctgccctctg
     1741 aaaaaccagc cacagatgtg gctgcgcagt gcttcctgaa tgcactgatt cgtgaaacca
     1801 cagactggaa actgacagaa tacccgccag acgaattgct catcccgctg gatgagcaga
     1861 aatcgctcca tttcagagtg gcttatttct ccccaaccca gcatcaccgc tttgcatttc
     1921 ctgcacgtct ggtcacggca tcaggcagtt atcctgtcga ctttaccact ctctcccggc
     1981 ttattattga taagctacgc catcaactgt ttctgcccgt tcccctctgc gaaactttcc
     2041 accagcgcgt gctggaaagc catgtccata cgcaacaggc aattgatgcc cgtcatgact
     2101 gggccgctct gcgtgaaaaa gcgttgaatt ttggcgaggc tgagcaggcg ctgctgacag
     2161 gacacgcttt ccaccctgcg cctaagtctc atgaaccgtt taaccggcgg gaggctgaac
     2221 gctacctgcc tgatatggca ccccacttcc cactgcggtg gttttcggtg gataaaacgc
     2281 aaatcgccgg tgaaagtttg catctcaacc ttcaacagcg gctgacgcga tttgccgcag
     2341 agaatgcgcc tcagttactc aacgaattaa gtgacaacca atggctgttc ccgttgcacc
     2401 cgtggcaggg ggaatatctt ttgcagcagg ggtggtgcca ggcacttgtt gctaaagggc
     2461 tgattaaaga cttaggtgag gccggcacgt cgtggctgcc gaccacctct tcccgttccc
     2521 tctactgtgc caccagccgc gatatgatca agttctccct gagcgtacgg ctgaccaact
     2581 ccatccgtac tctgtccgtg aaagaagtga agcgtgggat gcgcctggca cgcctggctc
     2641 aaaccgacgg ctggcagatg ctacaggtcc gcttcccgac tttccgggta atgcaggagg
     2701 atggctgggc cgggctgctc gatcttaacg gcaacatcat gcaggaaagt ctgtttgccc
     2761 tgcgtgaaaa tctgctggtg gatcagccga aaagccagac taacgtactg gtctccctga
     2821 ctcaggccgc acctgatggc ggtgattcgc tgctggtttc ggcggtaaaa cgcctgagcg
     2881 atcgcctcgg tatcactgtg caacaggccg cccatgcatg ggtcgatgca tactgtcagc
     2941 aagtgctaaa gccgctgttt acggctgaag cggattacgg cctggtgctg ctggcgcatc
     3001 agcaaaatat tcttgtccag atgcttgggg atctgccggt cggatttatt taccgtgact
     3061 gtcagggcag cgcttttatg cctcacgcga cagactggct cgattctatt ggcgaggcgc
     3121 aggcggaaaa tattttcacc catgagcagt tgctgcgcta tttcccttat tacctgctgg
     3181 ttaactccac ttttgctgtg accgctgcgc tgggggctgc cgggctggac agcgaatcga
     3241 atctgatggc tcgtgtacga gcatcgctgg ctgaagtgcg tgatcaggtg actcataaaa
     3301 cctgtctcaa ctacgtgctg gaaagtccgt actggaacgt aaaaggtaac tttttctgtt
     3361 atctgaacga tcataacgag aacaccattg ttgacccttc ggtgatctat ttcgatttcg
     3421 ctaacccgct gcaggctcag gaggtctgaa tgtctgaggc aaacattatt cacagcagat
     3481 atggactgcg ctgtgaaaaa ctcgacaagc ccctgaatct tggctgggga ctggacaata
     3541 gcgcggtgtt gcactgtccc ggggagctgc cgacagggtg gctgtgcgat gcgctggatc
     3601 agatatttat cgccgcacca caactgtcag cagtggctct cccctgggcc gaatggcgtg
     3661 aggagccaca ggcgctgacg ctttttgggc aggtaaaaag cgacattatc catcgtactg
     3721 ccttctggca gttaccgtta tggttgagtt caccggcaaa ccgggcctcc ggtgaaatgg
     3781 tttttgatgc agagcgtgag atttatttcc cgcagcgccc accccgtcca cagggtgagg
     3841 tttaccgccg ttacgatcca cgtattcgca ggatgctgag tttccgcatt gccgatcccg
     3901 tttctgatgc agaacgtttc acccgctgga tgaatgatcc gcgcgttgag tatttctggg
     3961 agcaaagtgg ctcactggag gtacagaccg cctatctgga gcgccagctc accggtaaac
     4021 atgcattccc gctgattggg tgcttcgacg atcggccatt cagctatttc gaaatctact
     4081 gggcggcgga agaccgcatt ggtcgtcact attcgtggca gccctttgac cgtggcctgc
     4141 atctgctggt tggtgaacag caatggcgcg gggcccacta tgtgcaaagc tggctgcgcg
     4201 ggctgacaca ttacctgctg ctggatgagc cccgtacgca gcgcacagta ctggagccac
     4261 gcaccgataa ccagcgcctg ttccgccatc ttgagcctgc gggataccgg acaattaaag
     4321 agttcgactt cccacataag cgctcgcgca tggtgatggc ggatcgtcat cacttcttca
     4381 cggaggtcgg tctgtaatga atcacaagga ctgggatttt gttaaccgtc ggctggtggc
     4441 aaaaatgttg tctgagatgg agtatgagca ggttttccac gcggaatctc agggcgatga
     4501 ccactactgc attaacctgc cgggagcaca atggcgcttc atcgctgaac gtggtatctg
     4561 gggctggctg tggattgatg cccaaacgtt gcgctgcacg gacgaaccag tactggcgca
     4621 gacgctgctg atgcagctaa agccggtgct gtcaatgagt gatgccactg ttgcagagca
     4681 tatgcaggat ttgtatgcca cgctactggg cgacctgcaa ctgctgaagg cccgtcgcgg
     4741 actgagtgcc agtgacctga ttaatcttga tgccgatcgt ctgcaatgcc tgctgagcgg
     4801 tcatcctaaa ttcgttttta ataaaggtcg ccgtggctgg ggcaaagagg cgctggaacg
     4861 atatgcgcca gagtatacca acaccttcag actgcactgg ctggcggtaa aacgtgaaca
     4921 tatgatctgg cgctgcgata acgatctgga tattcagcag ttgttgactg ccgcaatgga
     4981 tccgcaggag tttacacgct tcagtcaggt ctggcaggaa aacgggctgg atcacaactg
     5041 gctaccgctg ccggtacatc cgtggcagtg gcagcaaaaa atcgccacag acttcatcgc
     5101 tgattttgtc gaaggcagga tggtgtctct cggcgagttt ggcgaccagt ggctcgccca
     5161 gcagtcgctg cgtaccctga ccaacgccag ccgccgggga gggctggata tcaagctgcc
     5221 gctgaccatc tacaacacct catgctaccg ggggatccct ggcagatata tcgctgccgg
     5281 accactggct tcacgctggc tgcaacaggt ttttgcgacc gacgccaccc tggtgcaaag
     5341 cggcgcagtg atccttggtg aaccggcggc aggctatgtg tcccatgaag gctatgccgc
     5401 gcttgcccgg gctccctatc gctaccagga aatgcttggt gttatctggc gggagaatcc
     5461 gtgccgctgg ctgaaaccgg atgaaagtcc tgttctgatg gcaacactga tggagtgcga
     5521 cgaaaacaat cagccgctgg caggcgcata tatcgaccgc tccggactgg acgctgaaac
     5581 ctggcttacg caattgttcc gggtggttgt ggttccgctg tatcacctgc tttgccgcta
     5641 cggtgtcgcg cttattgcac acggacaaaa tataacgctc gccatgaaag agggggtacc
     5701 acagcgtgtt ctgctgaaag acttccaggg cgatatgcgg ctggtgaaag aagcgtttcc
     5761 cgaaatggat tctttgcctc aggaggtgcg tgatgccaca tcccgtctga gtgcggacta
     5821 cttaatccat gatttgcaga cgggtcactt cgtgacagta ctgcgtttta tttcgccact
     5881 gatggttcgt cttggcgtac ctgaaaggcg attttatcaa ctgctggcag cagtgttgag
     5941 tgattacatg aacaaacatc cacaaatggc agagcgtttt gcgcttttct cactcttcag
     6001 gccacaaatc attcgcgtgg tgctgaaccc ggtaaaactg acctggccgg acctggatgg
     6061 cggcagtcgc atgctgccga attaccttga gaatctgcaa aatccgctgt ggctggtaac
     6121 tcaggaatat gaatcatgaa aaaaagtgtc gattttattg gtgtcgggac agggccattt
     6181 aatctcagca ttgctgcatt gtcacatcag atcgaagaac tgaactgtct cttctttgac
     6241 gaacatcctc atttttcctg gcatccgggt atgctggtac cggattgtca tatgcagacc
     6301 gtctttctga aagatctggt cagtgcagtt gcacctacaa atccctacag ctttgttaac
     6361 tatctggtga agcacaaaaa gttctatcgc ttccttacaa gcaggctacg tacagtatcc
     6421 cgtgaagagt tttctgacta tctccgctgg gctgctgaag atatgaataa cctgtatttc
     6481 agtcataccg ttgaaaatat tgatttcgac aaaaaaagtc gattgtttct ggttcagacc
     6541 agtcggggag aatattttgc ccgcaatatc tgccttggta caggaaaaca accttattta
     6601 ccaccctgtg tgaagcatgt gacacaatcc tgtttccatg ccagtgaaat gaatcttcgt
     6661 cggccggacc tgagtggaaa acggataacc gtggttggtg gaggacagag tggtgcagac
     6721 ctgttcctta atgcattacg cggggaatgg ggagaagcgg cggaaataaa ctgggtctca
     6781 cggcgtaata attttaacgc actggatgag gctgcttttg ctgatgagta ttttacacct
     6841 gaatatattt caggcttctc cggactgaag gaagatattc gccatcagtt actggatgag
     6901 cagaaaatga catcggatgg catcactgcc gattctttac tgaccattta tcgtgagttg
     6961 taccaccgtt ttgaagttct gagaaaacca agaaatatcc gtctgctacc cagtcgctcg
     7021 gtaataactc tggaaagtag tggtccgggc tggaggttat tgatggaaca tcatctggat
     7081 cagggcagag agagcctgga aagtgatgtg gtgattttcg ccacaggtta ccgttctgca
     7141 ttgccacaaa tacttccctc actgatgccc ttgatcacca tgcacgataa gaacaccttt
     7201 aaagtgcgtg atgacttcac tctggaatgg agtggcccga aagaaaataa catctttgcg
     7261 gtcaacgcca gcatgcaaac tcatggcatc gccgaacccc agctcagcct gatggcctgg
     7321 cgatctgcac gtattcttaa tcgcgtactg gggcgtgatt tattcgatct cagtatgccg
     7381 cccgcactga ttcagtggcg cagcggcagc cggaaaaaac cgcagccgga ggctgcttct
     7441 ttaactcact atacagcaaa tattcaggaa taacgatgat gcgcaaaaag tatatgcccc
     7501 gggctcttgg tccgctgctt cttgtcgtgc tgtcaccagc tgtcgcccag caaaatgatg
     7561 ataatgagat catagtgtct gccagccgca gcaatcgaac tgtagcggag atggcgcaaa
     7621 ccacttgggt tatcgaaaat gccgaactgg agcagcagat tcagggcggt aaagagctga
     7681 aagacgcact ggctcagtta atccccggcc ttgatgtcag cagccagagt cgaaccaact
     7741 acggtatgaa catgcgtggc cgcccgctgg ttgtcctgat tgacggtgtg cgcctcaact
     7801 cttcacgttc cgacagccga caactggact ctgtcgatcc ttttaatatc gaccatattg
     7861 aagtgatctc cggcgcgacg gccctgtacg gtggcgggag taccggaggg ttgatcaaca
     7921 tcgtgaccaa aaaaggtcag ccggaaacca tgatggagtt tgaggctggc acaaaaagtg
     7981 gctttaacag cagtaaagat cacgatgagc gcattgccgg tgctgtctcc ggcggaaatg
     8041 accatatctc cggacgtctt tccgtggcat atcagaaatt tggcggctgg tttgacggta
     8101 acggcgatgc caccctgctt gataacaccc agaccggcct gcagcactcc aatcggctgg
     8161 acatcatggg aaccggtacg ctgaacatcg atgaatcccg gcagcttcaa ctgataacgc
     8221 agtactataa aagtcaggga gacgacaatt acgggcttaa tctcgggaaa ggcttttccg
     8281 ccatcagcgg gagcagcaca ccatacgtca gtaaggggct gaattctgac cgcattcccg
     8341 gcactgagcg gcatttgatc agcctgcagt actctgacag tgatttcctg ggacaggaac
     8401 tggtcggtca ggtttactac cgcgatgagt cgttgcggta ctacccgttc ccgacggtaa
     8461 atgcgaataa acaggcgacg gctttctcct cgtcacagca ggataccgac cagtacggca
     8521 tgaaactgac tctgaacagc caactgatgg acggctggca aatcacctgg gggctggatg
     8581 ctgagcatga gcgctttacc tccaaccaga tgttcttcga tctggctcag gcaagtgctt
     8641 ccggagggct gaacaaccat aagatttaca ccaccgggcg ctatccgtca tatgacatca
     8701 ccaatctggc ggccttcctg caatccagct atgacattaa tgatattttt accgttagcg
     8761 gtggcgtacg ctatcagtat actgagaaca gggtagatga tttcatcgac tacacgcagc
     8821 aacagaagat tgctgccggg aaggcgatat ctgccgacgc cattcctggt ggttcggtag
     8881 attacgataa ctttctgttc aatgctggtc tgctgatgca catcaccgaa cgtcagcagg
     8941 catggttcaa tttttcccag ggggtggcat tgccggatcc ggggaaatat tatggtcgcg
     9001 gcatctatgg tgcagcagtg aacggccatc tttccctgac aaagagcgtg aacgtcagcg
     9061 acagtaagct ggaaggcgtg aaagtcgatt cttatgaact gggctggcgc tttaccggtg
     9121 acaacctgcg gactcaaatc gcggcatatt actcgctttc caataagagc gtggaaagga
     9181 ataaagatct gaccatcagt gtgaaggacg acaggcgccg tatttacggc gtggaaggtg
     9241 cggtggacta cctgatcccg gatactgact ggagtaccgg tgtgaacttc aatgtgctga
     9301 aaaccgagtc gaaagtgaac ggtcaatggc aaaaatatga cgtgaaggaa tcaagtccat
     9361 cgaaagcgac agcttacatt aactgggcgc cggaaccgtg gagtctgcgt gtacagagca
     9421 ccacttcttt cgacgtaagc gatgcagagg gtaacgatat taatggttac actaccgtcg
     9481 attttatcag tagttggcag cttccggtgg gaacactcag cttcagcgtt gagaacctct
     9541 tcgaccgtga ctataccact gtctggggac agcgtgcacc tctgtactac agcccgggtt
     9601 acggccctgc ttcactgtac gactacaaag gccggggccg aacctttggt ctgaactact
     9661 cagtgctgtt ctgacgggga tgcttttgca acaagggtat gctgtaaaca acatggtcct
     9721 tggtggccat gttgtttaca gccagtataa tatacagcct taacaagata ttccgtctcc
     9781 ggaatggact gttcaccact gaataacatt atttctgttt tatggatctt tgactgaaat
     9841 ttatcgcata tcctcatttc attgtccgtc tgaaaactaa ccttacaagt aagcgtcgtc
     9901 tcagcaccgt ctggcagatc ctgaaattcc tgagaggatg atctgc
//
LOCUS       DAJVUP010000159         9876 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.159, whole genome shotgun sequence.
ACCESSION   DAJVUP010000159 DAJVUP010000000
VERSION     DAJVUP010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9876
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.159"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(55..1338)
                     /gene="aroA"
                     /locus_tag="OQQ75_003500"
     CDS             complement(55..1338)
                     /gene="aroA"
                     /locus_tag="OQQ75_003500"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HCS1977697.1"
                     /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL
                     LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL
                     AAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG
                     NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ
                     HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF
                     ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI
                     YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS
                     LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA"
     gene            complement(1409..2497)
                     /gene="serC"
                     /locus_tag="OQQ75_003501"
     CDS             complement(1409..2497)
                     /gene="serC"
                     /locus_tag="OQQ75_003501"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HCS1977698.1"
                     /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK
                     EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW
                     AASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID
                     ETPDFGKDVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA
                     NIACPSILDYSIFNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL
                     YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM
                     RASIYNAMPLEGVKALTDFMVEFERRHG"
     gene            complement(2696..3388)
                     /locus_tag="OQQ75_003502"
     CDS             complement(2696..3388)
                     /locus_tag="OQQ75_003502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HCS1977699.1"
                     /translation="MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRG
                     VRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLE
                     DLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQIS
                     VYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANP
                     EWTKASRAKRVT"
     gene            3518..5278
                     /locus_tag="OQQ75_003503"
     CDS             3518..5278
                     /locus_tag="OQQ75_003503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HCS1977700.1"
                     /translation="MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVW
                     SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH
                     YPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR
                     QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE
                     IPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA
                     HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL
                     FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD
                     IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG
                     LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ
                     TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH
                     QSLLKAYEKLQRAKAAFWAK"
     gene            5684..6541
                     /gene="focA"
                     /locus_tag="OQQ75_003504"
     CDS             5684..6541
                     /gene="focA"
                     /locus_tag="OQQ75_003504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HCS1977701.1"
                     /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF
                     ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS
                     GRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT
                     FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP
                     MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV
                     IYLRENDHH"
     gene            6596..8878
                     /gene="pflB"
                     /locus_tag="OQQ75_003505"
     CDS             6596..8878
                     /gene="pflB"
                     /locus_tag="OQQ75_003505"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1977702.1"
                     /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL
                     AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQT
                     EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTI
                     RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS
                     FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW
                     ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS
                     IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG
                     VDEKLKMQVGPKSEPIKGDLLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE
                     ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ
                     FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR
                     RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR
                     KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF
                     NSLTKEQQQDVITRTFTQSM"
     gene            9070..9810
                     /gene="pflA"
                     /locus_tag="OQQ75_003506"
     CDS             9070..9810
                     /gene="pflA"
                     /locus_tag="OQQ75_003506"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HCS1977703.1"
                     /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD
                     THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT
                     CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK
                     NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK
                     LDGVKPPKKETMERVKGILEQYGHKVMF"
BASE COUNT         2529 a         2486 c         2353 g         2508 t
ORIGIN      
        1 atgtgccgac gttttgataa agaaatattt ggctatttat tgcccgttgt tcattcaggc
       61 tgcctggcta atccgcgcca actgctcgaa ataatccgga aatgttttgg ccgtacattt
      121 gggatcaaga atcgtcactg gtgtatctga caacgccacc agcgagaaac acatcgccat
      181 ccggtgatca ttgtatgtcg cgatctcggc aaagttcagt ttttccggtg gagtgatacg
      241 aatgtaatcg tgcccctctt ctacttccgc accgacttta cgcagttctg ttgccatcgc
      301 aaacaggcga tcggtttctt taacacgcca gttatagata ttgcgcagcg tggtggtgcc
      361 ttttgcaaat aacgccgccg tggcaatggt catcgccgca tcgggaatat ggttcatatc
      421 catatcaata gcgttcagtt caccacgcgt gcaggaaata taatcatcgc cccagcaaat
      481 ggtcgcgccc attttttcca gcacatcagc aaagcgaata tcaccctgca tactgttacg
      541 tccaataccg gtcactttta cagtgccgcc tttgattgct gctgctgcca gaaagtaaga
      601 agccgaagat gcatcgcctt cgaccaaata agtacccgga gactgataag actgtccgcc
      661 ttttacgaca aattgttgat agtgctgatt ttcaatttca acaccaaacg tcttcatcag
      721 attgagtgtg atgtcgatat aaggtttaga aaccagatcg cctttaatac gaatcaccgt
      781 atcttccggc gcaagaggcg cagtcattaa cagtgcggtg aggaattggc tggaaacgga
      841 gccatcaacg tcaacgttgc cgccagtaaa gccgccctgt aaacgcaacg gcggataatt
      901 ttcttgttcc aggtaagtga tcttcgcccc gcccaggcgc agcgcatcca ccagatgacc
      961 aatcgggcgt tctttcatac gcggctcacc ggtcagcaca atatcattgc tacccagaca
     1021 aagagctgcc gccagcggac gcattgccgt tccggcgtta ccgaggaaca actccagggc
     1081 accttctgcg tgtaatggac cgccgttacc gataatttcg caacgcgtac gatcggctga
     1141 aagcgtatag cttaccccta acgctgttaa tgcattcagc atatggcgca cgtcatcgct
     1201 atccagcaga ttggttaata ctgttttgcc gtgtgctaat gccgccagca ataaagcgcg
     1261 gttagaaacg ctcttggaac cgggcagatt aatagtgcca tcgacacgag cgatgggttg
     1321 taacgtcagg gattccatga actcaactct ctacaacaga aataaaaacc ccacaggctg
     1381 gctgtgggga ttaagcaaaa tttcggcatt aaccgtgacg gcgttcgaac tcaaccatga
     1441 agtctgtcag cgctttaacg ccttccagcg gcatggcgtt ataaatagaa gcgcgcattc
     1501 cgccgaccac acggtgacct ttcagtgcat gaaggccagc agcaaaagac tcttcaagga
     1561 acaatttgtc aagcgcactg tccgccaact ggaacggcac gttcatccgc gaacggttag
     1621 ctttcgccac gtcattgcgg tagaaatcgc tgttatcaat caccccatat agcagttctg
     1681 ctttttgctg attgatttta tccatttcag ctacaccgcc gttcgctttc agccatttaa
     1741 agaccagacc agatagatac caggcaaatg tcggcggcgt gttaaacatg gagccgttat
     1801 cgttgaagat ggaataatcc agtatcgacg gacacgcgat attcgctttg cccagcaaat
     1861 cttcacgaac gatgacgatt gtcaggccag ccgggccgat atttttctgc gcgccagcgt
     1921 aaatcacgcc ataacggctg acgtcaatcg gacgggaaag aatggttgaa gagaagtcgg
     1981 cggcgaccac cacatctttg ccgaagtctg gcgtttcgtc gatggcgata ccgtcgatgg
     2041 tttcattcgg gcagtaatgc atataagcag cattatcaga gagttgccat tcacgcattg
     2101 gcttaaccgc gcgcagacca tcaacagtca ctttggcgtc aaagacatta ggcgtgcagt
     2161 attttttcgc ttctttaatg gcacttgccg cccagtaacc ggcatcaaca taatctgcgg
     2221 tggttttatc accgagaata ttcagcggta ccgcagcaaa ctgaccgcga ccaccgccat
     2281 ggcagaataa taccttgtag ttggagggga cattaagaag atcgcgaaaa tccttctcgg
     2341 cttcctctgc aacctgaatg aactctttgc cacggtgact cacttccatc accgacgtac
     2401 caagaccgtt ccagtcgcgc agttcctgtt gagcctgttt aagcacctct gccggtagca
     2461 ttgccggacc agaactaaaa ttgaagattt gagccatttc ccctcaccac gttgcgttgc
     2521 tattaacccg cggtcaatcg attgcgacca caggtaatac attattcctg tggctatcgg
     2581 ttttatcatt cagtgacaca catcgcaatg agtaaaaccg ttgagggcaa aaatgaggct
     2641 tgcatcacac aaaagaatct ctcggattat tagcaaaaag ccgatgtttt tactgtcagg
     2701 tcacccgttt tgcccgactt gccttcgtcc attctggatt tgcacagcgc ggacataatt
     2761 gtttttcccc cgctttcata tgaatgattt cactacaacg aatacaggca tagtccgccg
     2821 actccggcac cactttgtaa cgctgcgtac aatcactggg taaaataagt aaacccggtt
     2881 tcaccttgtc atcttcaaag aaatagacac tgatttgccc gttggtttcg agaatcgcca
     2941 gacgtacctg ccccagctgc tccacgccac gcaatcgtag ctccataaag aactcaaatt
     3001 ccgtcatgtt ggagttattg agtttcgacc aggccagctc gccatcttca ataataacaa
     3061 ccggcttacc ttccagtaga tcttccagtt tttcactgtg cgccatcaac cacattacca
     3121 ggcggtataa caacgccaga gtgataaaga cgataagtac cggcaccatc ggcacatcat
     3181 cataaaacgc cacatctccc gccgctgaac ccagcgtgag aatgattaac acttcaaaca
     3241 gcgacatctg tcgcacaccg cgtcttccgg tcattttgag gaacaaaaaa accagtacaa
     3301 aggtataaag actacgtagt gcaacttcgc caaggaaatc aaaaggcact ttatcaaatg
     3361 ccatacggtg gagatcgaac gccttcattt ttatgctctt atcgtggttt attcgctaaa
     3421 agcatagtca acagttcatc ggcatggcgg cggtgatagc gcctttgaga taaaacccgt
     3481 attattgcgc gctttccgta cgactaaagt gattttcatg acgcaaacat ttatccccgg
     3541 caaagatgcc gctctggaag attccatcgc tcgcttccag caaaaacttt cagacctcgg
     3601 ctttcagatt gaagaggcct cctggctgaa tcctgtgcct aacgtctggt ctgtacatat
     3661 tcgcgacaaa gagtgcgcac tgtgttttac caacggtaaa ggcgcaacca aaaaagcggc
     3721 gctggcttct gcacttggtg aatatttcga gcgtctctca accaactact tttttgctga
     3781 tttctggctg ggcgaaacca tcgccaacgg tccgttcgtg cattatccca acgaaaaatg
     3841 gttcccactg accgaaaatg acgatgtgcc agaaggacta ctcgatgacc gtctgcgcgc
     3901 gttttatgat ccggagaatg aactgaccgg cagcatgctg attgacctac aatccggtaa
     3961 cgaagatcgt ggtatttgcg gcctgccgtt tacgcgtcag tccgacaatc agaccgttta
     4021 tattccgatg aatatcattg gtaacctgta cgtctccaac ggtatgtccg caggtaatac
     4081 ccgcaacgaa gcacgcgttc agggattgtc tgaagttttc gaacgctacg tgaaaaaccg
     4141 cattattgct gaaagcatca gcctgccaga gatcccggca gacgtgctgg cgcgttaccc
     4201 agcggtggtt gaagcgatcg aaacactgga agcagaaggt ttcccgatct tcgcatatga
     4261 tggttccctt ggcggccagt atccggtgat ttgcgtggta ctgttcaatc ctgctaacgg
     4321 tacctgcttt gcctctttcg gtgcgcatcc tgattttggc gtagcactgg aacgtaccgt
     4381 gaccgagctg ctgcaaggtc gtggcctgaa agatttggat gtgtttactc cgccaacctt
     4441 cgatgatgaa gaagtcgctg aacataccaa cctcgaaacg cactttatcg attccagcgg
     4501 tttaatctcc tgggacctgt tcaagcagga tgccgattat ccgtttgtgg actggaattt
     4561 ctccggcacc acggaagaag agtttgctac gctgatggct atcttcaaca aagaagataa
     4621 agaagtttat attgccgatt acgagcatct gggcgtttat gcttgccgta ttatcgtgcc
     4681 tggcatgtcc gatatttatc cggctgaaga tctgtggctc gcgaataaca gtatgggcag
     4741 ccatttacgt gaaacgattc tttcgctacc aggcagcgag tgggaaaaag aagattacct
     4801 gaacctcatc gagcaactgg atgaagaagg ttttgatgac tttacccgcg tgcgtgagct
     4861 gttgggtctg gcgaccgggt cggataacgg ttggtacacc ctgcgtatcg gtgaattaaa
     4921 agccatgctg gcgctggctg gtggcgatct ggaacaggct ctggtctgga ccgaatggac
     4981 gatggagttt aactcatcag tatttagtcc ggaacgcgcc aactattatc gctgcctgca
     5041 aacgttgtta ttactggcac aggaagaaga tcgccagccg ctgcaatatc tgaatgcgtt
     5101 tgttcgcatg tacggcgcag atgccgtgga agccgccagt gcggcaatga gcggcgaagc
     5161 ggcgttttac ggcctgcaac cggtagatag cgatctgcac gcgtttgctg cacatcagtc
     5221 gttgttgaag gcctacgaaa agctgcagcg cgccaaagca gcattctggg caaaataaaa
     5281 tcaaatagcc tacgcaatgt aggcttaatg attagtctga gttatattac ggggcgtttt
     5341 tttaatgccc cgctttacat atatttgcat taataaaata attgtaatta taaggttaaa
     5401 tatcggtaat ttgtatttaa taaatacgat cgatattgtt actttattcg cctaatgctc
     5461 ccttttaatt aactatttta gcggaggatg cggaaaaaat tcaactcatt tgttaatttt
     5521 taaaatttat ttttatttgg ataatcaaat atttactccg tatttgcata aaaaccatgc
     5581 gagttacgga cctataagcc aggcgagata tgatctatat caatttctca tctataatgc
     5641 tttgttagta tctcgtcgcc gacttaataa agagagagtt agtgtgaaag ctgacaaccc
     5701 ttttgatctt ttacttcctg ctgcaatggc caaagtggcc gaagaggcgg gtgtctataa
     5761 agcaacgaaa catccgctta agactttcta tctggcgatt accgccggtg ttttcatctc
     5821 aatcgcattc gtcttctata tcacagcaac cactggcaca ggcacaatgc ccttcggcat
     5881 ggcaaaactg gttggcggca tttgcttctc tctggggctg attctttgtg ttgtctgcgg
     5941 agctgatctc tttacttcca ccgtgttgat tgttgttgct aaggcgagtg ggcgcatcac
     6001 ctggggtcag ttggcgaaaa actggctaaa tgtctatttt ggcaacctgg tcggcgcact
     6061 gctgtttgta cttttaatgt ggctttccgg cgagtatatg accgcaaatg gtcaatgggg
     6121 actaaacgtc ctacaaaccg ccgaccacaa agtgcaccat acttttattg aggccgtctg
     6181 tcttggtatc ctggcaaacc tgatggtatg tctggcagta tggatgagtt attctggccg
     6241 cagcctgatg gacaaagcgt tcattatggt gctgccggtc gcgatgtttg ttgccagcgg
     6301 ttttgagcac agtatcgcaa acatgtttat gatcccgatg ggtattgtaa tccgcgactt
     6361 cgcatctccg gaattctgga ccgctgtcgg ttctgcaccg gaaaattttt ctcacctgac
     6421 cgtgatgaac ttcatcactg ataacctgat cccggttacg atcggtaata ttatcggcgg
     6481 tggtttgttg gttgggttga catactgggt catttacctg cgtgaaaacg atcaccatta
     6541 atggttgtcg aagtacgcag taaataaaaa atccacttaa gaaggtaggt gttacatgtc
     6601 cgagcttaat gaaaagttag ccacagcctg ggaaggtttt accaaaggtg actggcagaa
     6661 tgaagtaaac gtccgtgact tcattcagaa aaactacact ccgtacgagg gtgacgagtc
     6721 cttcctagct ggcgctactg aagcgaccac caccctgtgg gacaaagtaa tggaaggcgt
     6781 taaactggaa aaccgcactc acgcgccagt tgactttgac accgctgttg cttccaccat
     6841 cacctctcac gacgctggct acatcaacaa gcagcttgag aaaatcgttg gtctgcagac
     6901 tgaagctccg ctgaaacgtg ctcttatccc gttcggtggt atcaaaatga tcgaaggttc
     6961 ctgcaaagcg tacaaccgcg aactggatcc gatgatcaaa aaaatcttca ctgaataccg
     7021 taaaactcac aaccagggcg tgttcgacgt ttacactccg gacatcctgc gttgccgtaa
     7081 atctggtgtt ctgaccggtc tgccagatgc atatggccgt ggccgtatca tcggtgacta
     7141 ccgtcgcgtt gcgctgtacg gtatcgacta cctgatgaaa gacaaactgg cacagttcac
     7201 ttctctgcag gctgatctgg aaaacggcgt aaacctggaa cagactatcc gtctgcgcga
     7261 agaaatcgct gaacagcacc gcgctctggg tcagatgaaa gaaatggctg cgaaatacgg
     7321 ctacgacatc tctggtccgg ctaccaacgc tcaggaagct atccagtgga cttacttcgg
     7381 ctacctggct gctgttaagt ctcagaacgg tgctgcaatg tccttcggtc gtacctccac
     7441 cttcctggat gtgtacatcg aacgtgacct gaaagctggc aagatcaccg aacaagaagc
     7501 gcaggaaatg gttgaccacc tggtcatgaa actgcgtatg gttcgcttcc tgcgtactcc
     7561 ggaatacgat gaactgttct ctggcgaccc gatctgggca accgaatcta tcggtggtat
     7621 gggcctcgac ggtcgtaccc tggttaccaa aaacagcttc cgtttcctga acaccctgta
     7681 caccatgggt ccgtctccgg aaccgaacat gaccattctg tggtctgaaa aactgccgct
     7741 gaacttcaag aaattcgccg ctaaagtgtc catcgacacc tcttctctgc agtatgagaa
     7801 cgatgacctg atgcgtccgg acttcaacaa cgatgactat gctatcgctt gctgcgtaag
     7861 cccgatgatc gttggtaaac aaatgcagtt cttcggtgcg cgtgcaaacc tggcgaaaac
     7921 catgctgtac gcaatcaacg gcggcgttga cgaaaaactg aaaatgcagg ttggtccgaa
     7981 gtctgaaccg atcaaaggcg atctcctgaa ctacgatgaa gtgatggagc gcatggatca
     8041 cttcatggac tggctggcta aacagtacat cactgcactg aacatcatcc actacatgca
     8101 cgacaagtac agctacgaag cctctctgat ggcgctgcac gaccgtgacg ttatccgcac
     8161 catggcgtgt ggtatcgctg gtctgtccgt tgctgctgac tccctgtctg caatcaaata
     8221 tgcgaaagtt aaaccgattc gtgacgaaga cggtctggct atcgacttcg aaatcgaagg
     8281 cgaatacccg cagtttggta acaatgatcc gcgtgtagat gacctggctg ttgacctggt
     8341 agaacgtttc atgaagaaaa ttcagaaact gcacacctac cgtgacgcta tcccgactca
     8401 gtctgttctg accatcactt ctaacgttgt gtatggtaag aaaactggta acaccccaga
     8461 cggtcgtcgt gctggcgcgc cgttcggacc gggtgctaac ccgatgcacg gtcgtgacca
     8521 gaaaggtgct gtagcgtctc tgacttccgt tgctaaactg ccgtttgctt acgctaaaga
     8581 tggtatctcc tacaccttct ctatcgttcc gaacgcactg ggtaaagacg acgaagttcg
     8641 taagaccaac ctggctggtc tgatggatgg ttacttccac cacgaagcat ccatcgaagg
     8701 tggtcagcac ctgaacgtta acgtgatgaa ccgtgaaatg ctgctcgacg cgatggaaaa
     8761 cccggaaaaa tatccgcagc tgaccatccg tgtatctggc tacgcagtac gtttcaactc
     8821 gctgactaaa gaacagcagc aggacgttat tactcgtacc ttcactcaat ctatgtaatt
     8881 agatttgact gaaatcgtac agtaaaaagc gtacaataaa ggctccacga aagtggggcc
     8941 ttttttagca cgagagcctt ttttgtcagc tatctatact ttaaggtgac tgccaaaaca
     9001 gactcgacgt agccttcgag ctgcgcacca acacggcctc agatgggcca catctggaga
     9061 aacaccgcaa tgtcagttat tggtcgcatt cactcctttg aatcctgtgg aaccgtagac
     9121 ggcccgggta ttcgctttat cacctttttc cagggctgcc tgatgcgctg cctgtattgt
     9181 cataaccgcg acacctggga cacgcatggc ggtaaagaag ttaccgttga agatttgatg
     9241 aaggaagtgg tgacctatcg ccactttatg aacgcttccg gcggcggcgt taccgcatcc
     9301 ggcggtgaag caatcctgca agctgagttt gttcgtgact ggttccgcgc ctgcaaaaaa
     9361 gaaggcattc atacctgtct ggacaccaac ggttttgttc gtcgttacga tccggtgatt
     9421 gatgaactgc tggaagtaac cgacctggta atgctcgatc tcaaacagat gaacgacgag
     9481 atccaccaaa atctggttgg agtttccaac caccgcacgc tggagttcgc caaatatctg
     9541 gcgaacaaaa atgtgaaggt gtggatccgc tacgttgttg tcccaggctg gtctgacgat
     9601 gacgattcag cgcatcgcct cggtgaattt acccgtgata tgggcaacgt tgagaaaatc
     9661 gaactcctcc cctaccacga gctgggcaaa cacaaatggg tggcaatggg tgaagagtac
     9721 aaactcgacg gtgttaaacc acctaagaaa gagaccatgg aacgcgtgaa aggcattctt
     9781 gagcagtacg gtcataaggt aatgttctaa tttccccgta aagcggcaac tttattgagt
     9841 tgccgctttt ttattccgcg cttcattctg ctacag
//
LOCUS       DAJVUP010000160         9787 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.160, whole genome shotgun sequence.
ACCESSION   DAJVUP010000160 DAJVUP010000000
VERSION     DAJVUP010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9787
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.160"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(187..528)
                     /locus_tag="OQQ75_003507"
     CDS             complement(187..528)
                     /locus_tag="OQQ75_003507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HCS1977704.1"
                     /translation="MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGA
                     VPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVEGLKL
                     IESGDWLDRDK"
     gene            complement(531..4310)
                     /gene="tamB"
                     /locus_tag="OQQ75_003508"
     CDS             complement(531..4310)
                     /gene="tamB"
                     /locus_tag="OQQ75_003508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamB"
                     /protein_id="HCS1977705.1"
                     /translation="MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVP
                     GLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQ
                     VNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSG
                     LNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSR
                     PVLPEMTDLHLPLNLNIEEFKGEQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDS
                     NQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKVGGALREQLEIGVNLSGP
                     VDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMR
                     TAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTL
                     NGINTAKEFPEWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGN
                     SYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKV
                     RGTVEAPQLLADITARGLRWQELSVTQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNI
                     NLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTLVGPW
                     SLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDFAMLK
                     PFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTL
                     NLTAELRNNRAELGWTIRLTNNGQFDGQVLVTDPQGRRNLGGNVNIRNFNLAMINPIF
                     TRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMR
                     STLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFE
                     ATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNL
                     IVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGE
                     LLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSY
                     LLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQV
                     VVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF"
     gene            complement(4307..6040)
                     /gene="tamA"
                     /locus_tag="OQQ75_003509"
     CDS             complement(4307..6040)
                     /gene="tamA"
                     /locus_tag="OQQ75_003509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamA"
                     /protein_id="HCS1977706.1"
                     /translation="MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLS
                     TIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGV
                     PVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
                     SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEY
                     ESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYST
                     DVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGF
                     KRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMI
                     SRTRSCGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGT
                     LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQY
                     NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHG
                     LQFYIGLGPEL"
     gene            6246..6884
                     /gene="msrA"
                     /locus_tag="OQQ75_003510"
     CDS             6246..6884
                     /gene="msrA"
                     /locus_tag="OQQ75_003510"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HCS1977707.1"
                     /translation="MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNEPDGME
                     IAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD
                     PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAA
                     MLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA"
     gene            7207..8550
                     /locus_tag="OQQ75_003511"
     CDS             7207..8550
                     /locus_tag="OQQ75_003511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1977708.1"
                     /translation="MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINA
                     QRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSF
                     ILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANM
                     IFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTP
                     RENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA
                     LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG
                     DLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK
                     IPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA"
     gene            complement(8612..8818)
                     /locus_tag="OQQ75_003512"
     CDS             complement(8612..8818)
                     /locus_tag="OQQ75_003512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1107 domain-containing protein"
                     /protein_id="HCS1977709.1"
                     /translation="MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKV
                     KDKLHLSVMSEVNRQVMRLQTEMA"
     gene            9143..9697
                     /locus_tag="OQQ75_003513"
     CDS             9143..9697
                     /locus_tag="OQQ75_003513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HCS1977710.1"
                     /translation="MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDK
                     DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT
                     DDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQ
                     WAKDGALTQEEVQQVMDLLQKLLK"
BASE COUNT         2260 a         2683 c         2408 g         2436 t
ORIGIN      
        1 actcaccgtt caaagcgtgc ccccgtttta cccctgcaca tttgtgaacg ccagcagagt
       61 tttttatgcg attgcagata tggaaagcgg ctcggagaga aaagcaaaag atggaaaagt
      121 tacaaaaaaa aatcgcgaga tacatcgcat aaaacaacgc cacccgaagg tggcgtgctt
      181 ttattattac ttatccctgt ctaaccagtc gccgctttca attagcttta atccctcgac
      241 gggtcgttga taaacgtaca tccatgcact cccgtacggc gtctgaatca actggcgcgc
      301 gtattcaccg cccctggtgc gcaaggcatc aagttcggcc agcgtggcgt tgtcaatacg
      361 ataaacttca ccgtgtaccg ttccgttccc cggaactgcg cctggatagt ggcccaggct
      421 atacaactgg tagttatcga tactgaaatc gcccagtaac tgggcattgg tcatccagtg
      481 actgttgcct tgtttgtggc gtaaactgcc gtagacaaat attcgcattg ctaaaactcg
      541 aactgataga gcaaatccag tgcctggtct acaccagaca cggcttccag atatagctta
      601 ggcatcaggc gataacgtaa cgtgagtgtt gctatagagt caaatatacc cacgccgtat
      661 ttcacttgca ggcctggcaa tacatagccg ctgaccacta cctgggagga gtcgcctact
      721 ccctgggtgt cgagcgctaa attgcttacg ccaaacgtct cgccgatttt acccacaatc
      781 tggccacttt gcgcaacccc cagaccaatc agcatcgagg tcattgccgc actgtcgctc
      841 tgatcgctct ccagcccttg tccacgtagc aaataagaca atgcagcttg ttgcgacatc
      901 gccgggtcag agaagatctc cgctttcggt tcgtccgcca gaccagtgac gcgaactccg
      961 gcgattacgt cgtcttctgt agcatccggg ttacgaatag cttcaatatt aagatacggt
     1021 tgatctggcg gaccagagaa cagtagctca cccttacgca caatcagatc ctgaccatag
     1081 gcatggaagc gcccttcagg gatgttgatc tgcccgttca ggcccagccc ttgtttgtcc
     1141 tgaacgacgt taagatcgcc cgtcagccgc gctttcaggc caaaggcgtc aatgcgcaca
     1201 ttgttgccaa cgtggacaat caggttactg ttaatcggaa tcgacgccgt tttcggctct
     1261 tccggttgca ggttatcgtt aagcatcacc acatcgctgg agacgcctac tgcgctttcc
     1321 ggcagatcgt gcaccacgat gcgcgcccac gggacatcca cgcgaccatc gagggtaaac
     1381 aggtttggtg tagcctcgaa tacaacatct ggcgatacat ccattcgtac catcggcggc
     1441 acggtgatcc gcactttact gcctttcgcc gttactcgtg cccgccagtt ttcaatttgg
     1501 ctccagtcgg catcaccgtt caggtagatt tcaccctgct gggtccgtac tgtaccggca
     1561 agcgtcgagc gcataccgtt aaagttgacc gcaagctggc tcggctgcat atcaaacggc
     1621 ataaagttgc cgtcgatatc cacacccgta acctgaagct gaccaaacaa ctgcgggctt
     1681 tgcacatcac cacccagacg caagttggca ctcaccatcc ccgctgcttt ttccccacga
     1741 gtaaagatgg ggtttatcat cgcaaggttg aagttacgga tattgacgtt gccaccaaga
     1801 ttacggcggc cttgcggatc ggtcaccagc acctgtccat caaactggcc gttattggtc
     1861 aggcggatgg tccagcccaa ttcggcacgg ttgttacgca attccgccgt cagattcagt
     1921 gtctgaaacg ccaccggcag cgccgcatcg ttgacggttt gcgttacctg cacgttacgc
     1981 cccgaaaggg tgatactgcc ctgcggcagc ccctctttcg tggtgtccca ggcaacatcc
     2041 gctttacccg tgaagatacc gctggcctga gtggtttctg gcataaacgg tttcagcatg
     2101 gcgaagtcga agcggttgag attcaccacc gcacgccctt cggcccccgc atcgatagtt
     2161 tgcggcacgc acagttccgc attcgggtta agccagcagt gtggcccgat gctgattttt
     2221 tgctccttat tgcggtaatc cagcgcaata tcgcgggtca gcgaccacgg gccgaccagc
     2281 gtctggaagc gggtattgct aagagttccc ttccagcgtt cttctttgcg atcaaaactt
     2341 cctgccagat taagctgccc ggagacaggc tcgccctgaa tccgcaactg tagctcgtgc
     2401 tgcttttcgc tgcctttggc attcagggtg acgaggttga tatttacatc cggctgcgaa
     2461 atttgctcaa cgcgtacgtc gagtttcccg gcgatctgat cggtggattt aatgtcgcct
     2521 tccacgcgaa cctgcgtcac ggaaagttcc tgccagcgca ggccgcgcgc ggtgatatct
     2581 gccagtagtt gtggcgcttc caccgtgccg cgtactttca ccagcccttt cgctgtaccg
     2641 ccaagccccg gcagcgcgtt atccagcccc ggcgcgttga tggtggcatc aagattgaga
     2701 tcttttaccc ccagctcgcc tttcacttcg gcactgtttg gccccagttc cagatgaagc
     2761 ccagggatca tccactgcat ataactgttg cctttcagcg tgccgtcaac gttcactttg
     2821 ttctgtttga cgttaccggt cagcttcagt tctggcacct ccatctgcca ggtgccgccg
     2881 tacaggctac cgcgggtttt aatcaagcca ttgagtttcg acggccactc cgggaactct
     2941 ttggcggtgt taatgccatt aagcgttagc tcaccgcgcc aactaatggc ctgctgccag
     3001 tcgagcaacg ccttgagttc agttttccct tccagcgccg cgacggtgag tttgtcgaga
     3061 ttgacctgct gttcattacc tttggcatca agggtaatgg tggctggcgg gatctcctgt
     3121 cccttcactg ccgtacgcat agagagcgtg taatcggtca ttttgccggt aagtttcagt
     3181 ttcagatcat ccgcctgata ctgcttctca ccagtgaacg gccagtaaag ctgtttgctg
     3241 ttcacttcca cgttgagcgg caatccggct tccgccagtc gcgtctgggc gcgtaaatcc
     3301 atatccaccg gaccggaaag attaacgcca atctccagct gttcgcgcag cgcgccgccc
     3361 acttttagct tcactttttc acctttcaac ggctccacgt tcagtgtgct gttgagggtg
     3421 atatccaccg gccagttgtc tgacagctgc gccgtgccgc tggcgttgac gatcccctgg
     3481 ttggaatcga tatccagggc gtccagttta gtattgccgt caatgctgct cactttcagc
     3541 agcatggtgc gcacggtgat gtccgtgtcg cccgtcacgc gtaactgctc gcctttaaac
     3601 tcttcaatgt tcaggttaag cggcaaatgc aagtcggtca tttccggcaa taccgggcga
     3661 gaaaagagat ctttcagcgt ttcgccgagc ggcttttcat ccggctgcgg attttcaatt
     3721 ttcggttcga ccacttcttc ctgcgccact tccgccactt tcggcagagc aatcagcagg
     3781 cctttcagcg acgtcggttt cagggtcagg gttttctcct gccagttcag gccggaggtg
     3841 aagtccatca ccgacaccgt ggtgtcatca atcttgatgt tgacgttgtc cagcgccacc
     3901 cgtgtcaggg tgatgggata cggcgtggag agatccagcg gaccgctatc ttcctcttct
     3961 tcaacctgtt cagaaggagg cattttttta ctgtcgatgt tgacctgaat gtctttcagc
     4021 gccaggtcat taatacaaac gctactgttc cacaggcact caagaccgac cgccagatgc
     4081 agattacccg cttttaccgc cacgcctggc tgctcataac gaacgtcaga caaggtgaga
     4141 tcgcgccagc cgccggtgac cttgccaata tccagtcctg gcacccagcg atccgccgct
     4201 ttaaatacaa gatgcaggcc gctggtggtg cccaccagaa acgccaccga tcccagcaac
     4261 agtaagataa cgataaccac gccgaggctg atttttttcc ataaactcat aattctggcc
     4321 ccagaccgat gtaaaactgt aacccgtgtt cgtctttatc cgcgaccggt acggcaaaat
     4381 cgagtttgat tggcccgacc ggcgattccc agcgcacgcc gaccccggta ccggttttaa
     4441 agtcgctgcg gcgaatatcg cttaccgctt cgccactatc gacaaacacc gcgccccacc
     4501 attttccggt cacgttgtac tggtattcca gcgatccggt tatcaacttc gaggcccctt
     4561 tcaggtcacc gttggcgtat ttcggggcga tagatttgta tttgtagccg cgaatactgc
     4621 gatcgccccc ggcgaaaaaa cgcagatccg gcggtacttt gtcgaaatca ccggtttcaa
     4681 tccagcccag cgtgccgcgt gtaacgaaac gatggcgatc gtacagtgtg cggatccaga
     4741 cgttctgcgc ctggaaaacg gagaaatcga catctgagcc ccaggccgtg ttggagtagt
     4801 cgatagagta gcgttgcgag tcgccccagg ttggcatcag gccaccacaa gaacgcgtgc
     4861 ggctaatcat caccccagga taaaacagca tcgtggtgtt ggtaatttca ccctgagtaa
     4921 agtggtcgag actccagcgc aggttaatgg cacgctgcca accgctggag agatcccagt
     4981 agcgagaagc caccagcgta gtggagtcag attcggtatc gttcaggtca gtgcgcttaa
     5041 aaccgccctg caccaaataa tattgttcca gtggattctt cagcagcggc attttatagc
     5101 tgaagtcgag ggtctgttcc ggcgcggaaa tactggtact ggtggtcaaa ctgtgaccgt
     5161 atgagttcat ccacggcttt ttccacgtcg ctttcacgcg cggtcccacg tccgtagagt
     5221 aaccgacccc ggtttcgatg gtgttttctg ttcgcggcga aaccacgccc gtcaatggta
     5281 atactttcgt ttcgcgcgct ttatcaaatt gtggagccac caccaccgag ttaaaccagc
     5341 cggtagcaga aagtcggcgg ttcagttccg ccagatcttt cgattcatac tcatcgccct
     5401 ctttaaacgg caccagattt tgcaggtatt catcgcggat ttgtgatcct tcaaaggtca
     5461 catgcccaaa gcggtaacgt tcgccactgt tataatcaat atcccagaag gctttatgca
     5521 ggccgagcgc aatgcccagc tgcgctttgg taaattcgct atcgaaataa cctttacgca
     5581 acgcaatact ggttaaggac tttttgaaat tttcataatc gccctggttc agtaccgtac
     5641 caatagccgg gcgagtatcg agcaatttca aatagtcttt atcggtccgc gcgccgccgc
     5701 gcaataccac atcggtgccg ccaattaaca ccggcacacc tggcgtgact ttggcgatca
     5761 atacctgccg ccctttcttt ggcggtggac ggagatcaaa ttcaatggtc ggctggtaat
     5821 aacccagcgc tttcagacct tcacggatgg catcatcgac gcgtgcgcga aagcggcggt
     5881 ctggcgtcac ttcatcactt tcaatcgtag aaagctgcgc acgaacgttc ttttccagct
     5941 gtcccgataa cccctcgacc tgtagacgga cgttcgcggc gacggcagat ccgcttaagc
     6001 agagtaagct tacacagcat aactgtcgga tatagcgcac attttctcct gaatatcctt
     6061 ttttcctgcc cctggaacgc cgttaaacgg cttaacaaaa atccagtaat atggattaaa
     6121 aagcagacta aaccccaaat atttcttatg ttttacttta gacctattca cggtggttat
     6181 tgtgtgcaaa tacgcctctt gttacaacct taaccccaat gaccgatttt cgggagagcg
     6241 acaccatgag tttatttgat aaaaagcatc tggtttcccc cgccgatgcc ctgcctggac
     6301 gtaacacccc gatgcccgta gccacgctgc atgcggtcaa cggtcactca atgaccaatg
     6361 aacctgacgg aatggagatt gccatttttg cgatgggttg tttctggggt gtggagcgtc
     6421 tgttctggca gttacccggc gtttacagca ccgccgcagg ctataccggc ggctatacgc
     6481 caaatccgac ttatcgggaa gtgtgctccg gtgatacggg tcatgccgaa gcggtacgca
     6541 ttgtttacga tccttccgtc atcagctatg agcagttgct acaggtattt tgggagaatc
     6601 acgatcccgc ccagggaatg cgtcagggca atgaccacgg cacgcagtat cgttcagcga
     6661 tttatccgct gaccccagaa caggatgccg cagctcgcgc cagtctggaa cgttttcagg
     6721 cggcgatgct tgccgccgat gacgatcgtc acatcaccac ggaaatcgct aacgccacac
     6781 cgttttatta tgccgaagat gaccaccagc aatatctgca taaaaaccca tatggttact
     6841 gtggaattgg cggaattggc gtctgtctgc cgccggaagc atagcgttac gggtacaaat
     6901 gtagtttgtt gataaagtgc tctttgtcta tgcctgatgc ggcttaaacg acttaccagg
     6961 cctacaaaat cgtccaaatt caatatattg caaggactgc gtaggcctga tcggcatagc
     7021 gcatcaggca gtattgcatt tatcagcagt ctgaatttta accctctggc gactttacag
     7081 taccttacgc tatactagcc actgaaaatt ccggttcact ttcttcgaat cggctttcaa
     7141 tgtgtatttc acacaaatta atcaactttc ccttccgagg atctggcctg aaaggtcgga
     7201 taagatatgt taaacagtat tttagtcata ctctgcttga tcgctgtaag tgcgttcttc
     7261 tcgatgtccg agatctcgct tgccgcctca cgcaaaatca aacttaaact gctggctgat
     7321 gaaggcaata taaatgccca acgcgttctg aatatgcagg aaaatcccgg catgttcttt
     7381 accgtggtcc aaatcggtct gaacgcagtg gcgattctcg gcggtatcgt cggtgatgcg
     7441 gcattttctc cagcttttca cagcctgttc tcccgctata tgtcggcaga gctctctgag
     7501 caactgagct ttattctctc tttctcgtta gtgactggca tgtttatcct gtttgcggat
     7561 ttaaccccga aacgcatcgg tatgattgcg ccagaagcgg tggctttgcg tatcatcaac
     7621 ccgatgcgct tctgcctgta cgtttgcacc ccgctggtgt ggttcttcaa cggcctggcg
     7681 aacatgatct tccgtatttt caaactgcca atggtacgta aagatgacat cacttctgat
     7741 gacatctacg cggtagtgga agccggtgcg ctggcgggcg tgttacgtaa acaggaacac
     7801 gagctgattg aaaacgtctt tgagctggaa tcccgtaccg ttccgtcttc aatgacaccg
     7861 cgtgaaaacg tgatttggtt tgatctccac gaagatgagc aaagcctgaa gaataaggtg
     7921 gcggaacatc cgcactctaa gttcctcgtc tgtaatgaag atattgacca catcatcggt
     7981 tatgtcgatt ctaaagacct gctgaaccgc gtgctggcta accaaagcct ggcactgaac
     8041 agcggcgtac aaattcgcaa cacgctgatt gtgccggata cgttaaccct ttcagaggcg
     8101 ttggaaagtt ttaaaaccgc aggtgaagac ttcgcggtga tcatgaacga gtacgcgctg
     8161 gtggtgggga tcatcaccct caacgacgtg atgaccacgc tgatgggcga tctggtcggt
     8221 caggggctgg aagagcagat tgtcgcccgt gatgagaact catggctgat tgacggcggc
     8281 accccaattg acgacgtcat gcgcgtgctg gatattgacg agttcccgca gtcgggcaac
     8341 tacgaaacca tcggcggctt tatgatgttt atgctgcgta agatcccgaa acgcaccgat
     8401 tcggtgaaat tcgccggcta caaatttgaa gtggtggata tcgataacta ccgcatcgac
     8461 cagctgctgg tgacccggat cgacagcaag gccaccgccc tttcgccaaa actgcctgac
     8521 gctaaagata aagaagaaag cgtcgcgtaa cccccagaaa catcaacggc tcctgaatca
     8581 ggagccgtct tattactgca tagcactttg gttaagccat ctctgtttgc agacgcataa
     8641 cctgacggtt aacttcggac atcactgaca aatgcagctt atccttcact tttgggataa
     8701 gaatcttacc cttatcaaat tcaaaagcgc caacgtcctt gatgtataac cgtccacgga
     8761 acaggatctt tacgtacttc gccacctgaa gtgggttgta ccgttggaaa attttcattg
     8821 ttatctcctg ctgagtatta cgcctgtgcg gtgccacaat cggcccaact attatgagac
     8881 gcaaatttta atgcttagtg actatagact atccgggcaa tgtttccacc gcgtataact
     8941 ttttttacct aaaggttaca attattcaga attatctttt taccgaagcg cggtcttcag
     9001 tataagcatt catttttcat atgatttgtg cgcttgaccg caaactggca tcacacttgc
     9061 gggaaattcg ataaatagca catatgatta aaactcagat ccaagtggtc ggatcacctg
     9121 catatcataa gaaggaaaca ccatgaccct acgcaagatt ctggcactca cctgcctgct
     9181 gttgccgatg atggcttccg cacatcagtt cgaaaccggt cagcgagtgc cgccgattgg
     9241 cattaccgat cggggcgagt tggtgcttga taaagatcag tttagctaca aaacctggaa
     9301 cagcgcgcag ttagtgggaa aagtgcgagt actgcaacat attgctggtc gcacctctgc
     9361 aaaagagaaa aacgcgacgc tgattgaagc gattaaatca gcaaagttac cgcacgatcg
     9421 ttaccagacc accaccattg ttaacaccga cgacgcaatt ccgggttccg gcatgtttgt
     9481 gcgcagcagt ctggagagta ataaaaagct ttatccctgg tcgcagttta ttgtcgatag
     9541 caatggcgtc gcgcgcggtg cctggcagct ggatgaagaa agttccgctg tagtggtgct
     9601 ggataaggat ggtcgcgtgc aatgggccaa agacggggcg ctcacacagg aagaggtgca
     9661 gcaagtgatg gacctgctgc aaaagttgct caaataatgg caataacata aattctgcaa
     9721 aaataatttt cccctatcgt tatctatggg ataggggaat taggtctctg agctcttaca
     9781 ccgaact
//
LOCUS       DAJVUP010000161         9765 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.161, whole genome shotgun sequence.
ACCESSION   DAJVUP010000161 DAJVUP010000000
VERSION     DAJVUP010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9765
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.161"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..243)
                     /locus_tag="OQQ75_003514"
     CDS             complement(<1..243)
                     /locus_tag="OQQ75_003514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISKra4 family transposase"
                     /protein_id="HCS1977711.1"
                     /translation="MQLTLQIVITDESGSSRTEELMTIQKSGETRNDIGLSVSESKLL
                     LNTVQQSVVQLQADEYTQHHIRCPHCLAARRIKGKQK"
     gene            complement(280..852)
                     /locus_tag="OQQ75_003515"
     CDS             complement(280..852)
                     /locus_tag="OQQ75_003515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1977712.1"
                     /translation="MQYAYIRVSSADQNTARQEEALSKAGFQPDKICVEHASAKDTNR
                     PGLQELLGQLRPGDTLLVHSIDRLCRNMSDMCAVTTRLRDQGVTLIFLKEQLTFSAGT
                     NNPMQELQLHMMSAFSQFERALLKERQADGIAAKKARGEKTGRPGADIKKIQEIDALR
                     SRGVRLRIACDHAGLGVSTYYKLRHQMNNQ"
     gene            complement(989..1579)
                     /locus_tag="OQQ75_003516"
     CDS             complement(989..1579)
                     /locus_tag="OQQ75_003516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001366942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HCS1977713.1"
                     /translation="MKIYVIKIAVHGVSPMVWRRLRIAADTSLAALHFIFQIVQGWGD
                     DHLHQFHIYGKDYGISYEGGIGFVDNPFRVVIDDFAFDAGDRFTYEYNFFEHWLHDIR
                     VEAIYENSTLKAPFCISGHGMPGATAADEFDKTLAFLEAIVNADDETTVGEIRPFADD
                     LDAVRFNRHKINRQLSRLDLASPVLEPEVIWLGRRR"
     gene            complement(1669..1830)
                     /gene="relE"
                     /locus_tag="OQQ75_003517"
                     /pseudo
     CDS             complement(1669..1830)
                     /gene="relE"
                     /locus_tag="OQQ75_003517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416081.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     RelE"
     gene            complement(1830..2069)
                     /gene="relB"
                     /locus_tag="OQQ75_003518"
     CDS             complement(1830..2069)
                     /gene="relB"
                     /locus_tag="OQQ75_003518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin RelB"
                     /protein_id="HCS1977714.1"
                     /translation="MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERL
                     PFKQTLLSDEDAELVEIVKERLRKPKPVRVTLDEL"
     gene            2450..4447
                     /gene="betT"
                     /locus_tag="OQQ75_003519"
     CDS             2450..4447
                     /gene="betT"
                     /locus_tag="OQQ75_003519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004119118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline BCCT transporter BetT"
                     /protein_id="HCS1977715.1"
                     /translation="MSENDTTPKKSTSQVNKAVFFTSALLIFLLVAFAAVFPDVADKN
                     FKLLQQQIFTNASWFYILAVALILLSVTFLGLSRYGDIKLGPDHAQPDFSYHSWFAML
                     FSAGMGIGLMFFGVAEPVMHYLSPPVGTPETVAAAKEAMRLTFFHWGLHAWAIYAIVA
                     LILAFFSYRHGLPLTLRSALYPIIGDRIYGPIGHAVDIFAVIGTVFGVATSLGYGVLQ
                     VNAGLNHLFGVPINETVQVILIVVITGLATISVVSGLDKGIRILSELNLGLAVLLLAL
                     VLCLGPTVLLLKSFVENTGGYLSELVSKTFNLYAYEPKSSNWLGGWTLLYWGWWLSWS
                     PFVGMFIARVSRGRTIREFVTGVLFVPAGFTLMWMTVFGNSAIYLIMNQGATDLANTV
                     QQDVALALFNFLEHFPFSSVLSFIAMAMVIVFFVTSADSGAMVVDTLASGGVANTPVW
                     QRIFWALLMGVVAIALLIAGGLSALQTVTIASALPFSVILLISIYGLLKALRRDLTKR
                     ESLSMATIAPTAARNPIPWQRRLRNIAYLPKRSLVKRFMDDIIQPAMTLVQEELNKQG
                     TISHISDAAEDRIRLEVDLGNELNYIYEVRLRGYNSPTFALAALDNDEQQSEQHRYYR
                     AEVYLKEGGQNYDVMGWNQEQLINDILDQYEKHLHFLHLVR"
     gene            4511..5788
                     /locus_tag="OQQ75_003520"
     CDS             4511..5788
                     /locus_tag="OQQ75_003520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2254 domain-containing protein"
                     /protein_id="HCS1977716.1"
                     /translation="MISRWKWMLKQTFKKLWFRATLFAIVAIITALLSILFKSMIPES
                     VSVKVGAEAVDNILNILASSMLAVTTFSLSIMVTAYGSATTNVTPRATRLVVEDVTTQ
                     NVLATFIGSFLFSLVGIIALNMGAYGERGRVILFIVTLVVIALILITLLRWIQHLTSL
                     GRVGETTAKVEQAAIETFIARARNPCLGGYPWLENNEQPKGTVAVYPKKIGYVEYVDM
                     VKLSKLLTNDPRHVYLVAQPGSFIHPSTPVLYLSQGQESSISTDLLETIIVSDVRSFA
                     QDPRFCLSVMAEIACRALSPAVNDPGTAIDVIGRGVRILSAYAQNKSDEIEVKYPSVH
                     VAPLQNNDLLEDFFSPVARDGASMREIQIRVLKGLSMLSKGWPGIFAEAAQTLAFETL
                     EHATRADHIDSDRYLIKSIYYNLFSGEDSNKKP"
     gene            6405..7835
                     /locus_tag="OQQ75_003521"
     CDS             6405..7835
                     /locus_tag="OQQ75_003521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004714530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977717.1"
                     /translation="MSSELIAKPGTGVLSTDTTKFEGYLSYLGLPTENIIASLPERQI
                     IEKNLPTFIDSLPAEVKRDARYLSKFVAGAAIGLFDASLNYVWNEVVLNLREKVVVYG
                     LDMFFDAAVGGGRRELYSTEEDLSGLKDNTLINTCRKLELISDVVYTKLNHILTMRND
                     IGASHPNSYSINAFELLGWLQTCVQDILNDKPSASAIQIKSFLENLKRSTDVLDEATI
                     HSMERPLNDLSLQNTDNLLNSIFGIYTADSTGNVVRKNIALFAPHIWNKSSDNVKYKL
                     GVTLDGYKNNLHNEKHALGIEFFTFCDGNRYQSLDSRIISLDGHADDLLEARYAWDNF
                     YNEPPHMRKILSYLKTENDIPLERVHKLIKTVLICRVGKGIPYNTGVSPAGRPLYDQF
                     FGMLGDQNIINTVIAMHSNEVRVNLDNKYCQQHMVSVLTLLRANARSERIQEIIDFLI
                     ANQTILHKVHNDKRYRDLTKNHISFG"
     gene            7976..8578
                     /locus_tag="OQQ75_003522"
     CDS             7976..8578
                     /locus_tag="OQQ75_003522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1977718.1"
                     /translation="MNTSSWNKGRIVGQKRPLQISHIWGIRIRLELEGKTRDLALFNM
                     ALDSKLRGCDLVKLKVSDVAYGSSVSSRATVLQQKTGSPVQFEITKGTREAVTALIKL
                     GNLHSNDFLFRSRVGTNQHISTRQYNRIFHGWIAKLGLDDSLYSTHSMRRTKPYLIYK
                     KTKNLRVIQLLLGHRKLESTVRYLGIEVDDALEISESIEI"
     gene            complement(8675..9484)
                     /locus_tag="OQQ75_003523"
     CDS             complement(8675..9484)
                     /locus_tag="OQQ75_003523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000161640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin"
                     /protein_id="HCS1977719.1"
                     /translation="MTKISERWKHNGITEGYCNICGKYGLLTKDHVPPKCAITLGPVL
                     QKTVSEFFGIQEPVKPLNAKNGSYFRTICSHCNNKVLGGLDVAIENVTKSFKEQLSRY
                     MNGMNVYPFIRIPFDSISFTKAMIGHVLSATSVEDCKKEPVDSPFYTPLKDYVLGKNS
                     SFEETHDIYYWFYPHRMHISAQSVAFMNEGHVAFICALHFFPIGFIITMKNEGTYPAH
                     STKLELEDKFLTFNMTSINYEYTTFPFVNLKGNQMYAISNGHTCVSYPIIK"
BASE COUNT         2625 a         2182 c         2219 g         2739 t
ORIGIN      
        1 tttctgtttg cctttgattc tgcgcgcagc aaggcagtga gggcaccgga tatggtgttg
       61 agtatattcg tctgcctgca gctggaccac cgactgctgg accgtattca gcaacagctt
      121 ggattctgac accgataatc cgatgtcgtt ccgggtctcc cctgatttct ggattgtcat
      181 cagttcctcc gttcgactgg agcctgattc atcggtgatg actatctgga gcgtcagttg
      241 catcattgcc tcctgctgtg gtggatgact atctcccggc tactggttgt tcatctggtg
      301 acgaagctta taatatgtgg aaacgccaag gcccgcatgg tcgcaggcga tcctgagcct
      361 gacccctctg cttctgagtg cgtcaatttc ctggatcttt ttgatatcgg cgccggggcg
      421 ccctgttttt tcaccccgtg cttttttcgc ggcgatgccg tcggcctgcc tttccttcag
      481 taaggctcgt tcaaactggc tgaatgccga catcatgtgc agctgcagtt cctgcatcgg
      541 attgtttgtg ccggcgctga acgtcagctg ctctttcaga aaaataaggg taacgccctg
      601 gtcacgaagc cgggtggtga cagcgcacat atccgacata ttccggcaaa ggcgatcgat
      661 ggaatgaacc agaagcgtat caccagggcg taattgcccc aggagttcct gtaaccccgg
      721 gcggtttgtg tccttcgcgc tggcatgctc aacacaaatt ttatcaggct gaaaacccgc
      781 ctttgacaat gcctcttcct gacgggccgt attctgatcg gccgagctta ccctgatgta
      841 ggcatattgc acgcaaaacc tccggaaggt ctttaaacat catagagatt taaagaataa
      901 tccataaaca ctgatttagg gaggtttata gacatttttt cggggatctg agaggcatgc
      961 tgaaaacgta tacctttata gacatcagtc agcgacgacg gcccagccag ataacttcag
     1021 gctccagtac cggagatgca aggtcgagcc tgctcagttg ccggttgatt ttgtggcggt
     1081 tgaacctgac agcatccagg tcgtcagcaa aagggcggat ctcgccgacc gttgtttcat
     1141 catccgcatt aacgatagct tcaagaaacg ccagggtttt atcgaactca tccgcagctg
     1201 tggctccggg cataccatgg ccgcttatac aaaacggcgc tttcagcgta gagttttcat
     1261 aaatggcctc aacacgaatg tcatgaagcc agtgctcaaa gaaattgtat tcataggtaa
     1321 agcgatcgcc agcatcaaaa gcaaaatcat caatcacgac ccggaacgga ttatcgacaa
     1381 aaccgatgcc tccttcgtag gagataccgt aatctttgcc ataaatgtga aattgatgga
     1441 gatggtcgtc cccccagccc tgcactatct ggaaaatgaa gtgaagcgcg gccagtgacg
     1501 tgtcggcagc aattctcagc cgacgccaga ccatcggact gactccatga actgctattt
     1561 tgatgacgta gatcttcata gtcagcaggt attgttatga aatgatggtg gttattttaa
     1621 cccctgtaga tggcatcatt cgatggctgc cccgaggttt ttcatgctct ccatcttgta
     1681 acaatcaggc ataccacgga gcttgtttgc ttcaatccgg ggtgactcaa gtacttcaac
     1741 cagcttcttt ttcaactgtt cacgtaccgt cgagcccagc tttcgccatt cctttagtgc
     1801 ccgctcgtca aaatccagaa aatacgccat cagagttcat ccagcgtcac acgtactggc
     1861 ttaggcttac gaagccgttc tttcactatc tccacaagtt cagcatcttc atcactcagg
     1921 agtgtctgtt tgaacggcaa gcgttcattg tcagcgatat actcgagcat gagacgaagc
     1981 gcttcagaag gagttacgcc cattttttca agcgcggcgt aagaacgcgc tttaagttca
     2041 tcgtcaatac gcaggttaat gctacccatg tcttacacct cttgtaatta caaatgtcat
     2101 tacaagtatc gcactacaac atgcttaggg caagtcacga aggaagtcag aaagtagtcg
     2161 taagaacggt gatcactgtc cgctttgtgc caagagcaga cgctggtaat tcgtgcctaa
     2221 tatacttcac ttaacttata tcccagcttt gatacagatc atacaaatta aatgccccag
     2281 taattggcag gctgagtaac ttaaaactcc ttagaatata ggatgatttg tatcggcact
     2341 cattccacca tgcattccga ttaatcccgc atagccagtt gaactttgct actctgtgag
     2401 aggtagtacc ttctatccag tgcggattta attaatggaa taaatgatta tgagtgaaaa
     2461 tgatacaacc ccaaagaagt ctacaagcca ggttaacaaa gcggtattct ttacatctgc
     2521 tttgctaatt ttccttcttg tcgcctttgc cgccgtattc ccggatgtcg ccgacaaaaa
     2581 ttttaaacta cttcagcaac aaatcttcac gaatgccagc tggttctaca tacttgctgt
     2641 ggccctgatt ttactgagcg tcacgttcct tggactctca cgttacggtg atataaagct
     2701 gggcccagac catgcgcagc ctgatttcag ctaccactcc tggttcgcga tgcttttttc
     2761 ggcagggatg gggatcggcc tgatgttctt tggcgttgcc gaacctgtga tgcattatct
     2821 ttcgccacct gtcggcactc cagagaccgt tgcggcagcg aaggaagcca tgcgcctgac
     2881 gttcttccac tggggtctgc acgcatgggc aatttatgcc atcgtggcgc tgattctggc
     2941 ctttttcagt taccgtcacg gtctgccttt aacgctgcgt tctgcgctct atcccattat
     3001 cggcgatcgc atttacgggc ctataggcca cgcggttgat atcttcgccg tgataggcac
     3061 tgtctttggc gttgcaacat cgctgggtta cggtgtattg caggtgaatg ccggtttgaa
     3121 ccatcttttc ggcgtgccca tcaatgaaac ggtacaggtc attttgatcg tggtcatcac
     3181 ggggttagcg acgatttcgg tggtgtccgg cctggacaag ggaatacgca tcctgtctga
     3241 gcttaatctg ggcctggcgg tgttgctcct ggcgctggtc ttgtgcctgg gtcccactgt
     3301 gcttctgctg aagtcatttg tggaaaatac gggtggttat ctgtcggaac tggtgagtaa
     3361 aacgttcaac ctttacgcgt atgaacccaa gtcgagcaac tggctggggg gctggacatt
     3421 attatactgg ggatggtggc tttcatggtc gccgtttgta ggtatgttca ttgcacgcgt
     3481 ttcccgcggc aggacaattc gtgagttcgt gactggcgtg ttgtttgttc ccgccggctt
     3541 tacgctcatg tggatgacgg tgtttggaaa cagcgccatc tatctcatca tgaaccaggg
     3601 cgccactgac ctcgccaata ccgttcagca ggatgttgcg cttgccctgt ttaatttcct
     3661 ggagcatttc ccgttctctt ccgtgctgtc attcattgca atggcgatgg tcatcgtctt
     3721 ctttgtaacg tctgctgatt cgggggcaat ggttgtggat actctggcat caggtggggt
     3781 ggcaaacacg cccgtctggc agcgaatttt ctgggcattg ctcatgggcg ttgttgctat
     3841 tgccctgctg atcgcagggg ggctgagtgc gttgcaaacc gtaacgatag cgagtgcatt
     3901 gcccttctca gttatcttat taatatccat atacggactg ttaaaagccc tgcgtcggga
     3961 tttgaccaag cgtgaaagcc ttagcatggc gactattgct cctacggctg cacgtaaccc
     4021 aattccctgg cagagaaggt tacgcaatat cgcgtatttg ccgaagcgct ctcttgtgaa
     4081 acgttttatg gacgacatta tccaacccgc catgacgctg gttcaggagg aacttaacaa
     4141 gcagggaacg ataagccaca tcagtgacgc cgccgaggat cgtattcgcc ttgaagtcga
     4201 tttgggcaac gagctgaatt atatatatga agtgaggctt cgcgggtata actcaccgac
     4261 cttcgcgctc gctgcgctgg ataatgatga gcagcagagt gaacaacatc gatattatcg
     4321 cgctgaagtc tatctcaaag agggcggcca aaattatgat gtaatgggct ggaatcagga
     4381 acagctgatt aatgacatac tggaccagta cgaaaaacac ctgcacttcc tgcatctggt
     4441 tcgttaacag caacatgccg ccacagaggc ggcatttatt tatcccggct gcaatatgag
     4501 ggaatgcaga atgatttcac gctggaaatg gatgctgaag cagacattta aaaaactatg
     4561 gttcagggca acgttattcg caattgtcgc aataataacg gcccttttat caattctttt
     4621 taaatcaatg atacctgagt cggtttccgt gaaggttggt gcggaagcag tcgataacat
     4681 tctgaacata ctggcatcga gtatgctggc agtgaccaca ttttcgctga gcatcatggt
     4741 cacagcctac ggttcagcca ctactaatgt gactcccaga gctactcgtt tagttgttga
     4801 agacgtcacc acacaaaatg tactggccac cttcatcggt tcttttctct tcagtctggt
     4861 agggattatt gccctcaata tgggagctta tggagaaagg gggagagtca ttttattcat
     4921 tgtaacactg gttgtcattg ccttaatcct catcacattg cttcgctgga tacagcattt
     4981 gacctctctg gggagggttg gtgagacaac ggcaaaagta gaacaggcgg ccatcgaaac
     5041 atttattgcg agagcaagaa atccctgtct cggcggatat ccatggcttg agaacaatga
     5101 acagccgaaa ggaacggttg cagtttatcc gaaaaagatt ggctatgttg aatatgttga
     5161 tatggtgaaa ctcagcaagc tgctgaccaa tgatccccgt catgtatacc tcgtggcgca
     5221 gccgggcagt ttcatacatc cgtccacgcc agttttgtac ctgagtcagg gccaggagtc
     5281 atcaatcagc accgatttac ttgagacgat tattgtctcg gatgtacgtt catttgctca
     5341 ggacccccga ttttgtctta gcgtcatggc cgaaatagcc tgccgagccc tttcccccgc
     5401 agtgaacgat cctggaaccg ccattgatgt cattggcaga ggtgtacgta tactttccgc
     5461 ttacgcgcag aataaatctg atgaaataga agtgaaatat ccttctgtac atgttgcacc
     5521 acttcagaat aacgatctac ttgaagactt tttctcacct gttgcgcgcg atggtgccag
     5581 tatgagggaa attcagataa gggtccttaa aggactgtcg atgctgagta agggttggcc
     5641 tggaattttt gctgaagccg cacaaaccct agcatttgaa acattagagc atgctactcg
     5701 tgctgaccat atagattctg acagatatct aataaaatca atttattata atttatttag
     5761 tggcgaagat tctaataaaa aaccatagtt gcggagcaag cgatacggtt gttggcaagt
     5821 caagggcaaa gcattcgcgt gagagtgggc gtctgctttg tgccaaaagc gggcattggg
     5881 cgttgtggta aatgcctgat aatttcttct tttactagca caagccgctg gataattccc
     5941 atgtgtccag cttaagtaaa tcaagaacaa ctcgcgtact ggctgtataa agtttgccgg
     6001 acgcaaattt attgatttca gaaaaacctg ttgaaataga ggtatatcag cgttagtttg
     6061 atgtgagtaa agatcaggaa agaaggcaga aaaatgttcc acttgcgggc aaaaaagcct
     6121 tctattaaat tgttaaggct ttatgaagat cgtacattac gaatcgaatt caccatgggt
     6181 agggaacatg aaatgtccaa accctaagtg cgggagaaat gactcctgct tgattcggga
     6241 taggttgtac tcgcatgaag tatgtattgg atctaaaccc aaatactggt ggcgtttgct
     6301 cacaaatacc ttaacaagtt taggtatggg acgctcctaa cgtcgcgccc ctgctaaaag
     6361 cgttagctgt tctctagcct tcaaccagat aaggaaataa tcgtatgagt tcagaattga
     6421 ttgcaaaacc tggaacaggg gtactttcca cagatacaac aaaatttgaa ggatatttat
     6481 cctatcttgg tttgccgacc gaaaatataa ttgcctctct ccctgagcgc caaattattg
     6541 aaaaaaacct ccccacattc atagattctt tacctgctga ggtaaaaaga gatgctcgat
     6601 atttatcaaa gttcgttgct ggtgcggcta taggactatt tgatgcatcg ttaaattatg
     6661 tttggaatga agttgtactg aatttaaggg aaaaagtagt agtttatggc ctcgatatgt
     6721 tctttgatgc tgcagttgga ggaggacgta gagagcttta ttctaccgaa gaagatcttt
     6781 ctggtttaaa agacaacacc cttattaata cttgccgaaa acttgaatta atatctgacg
     6841 ttgtttacac caagctcaat catatattga ctatgaggaa tgacattggt gcttcgcacc
     6901 caaattcata ctccataaat gcttttgaac ttcttggctg gctccaaaca tgcgttcaag
     6961 atattttgaa cgacaaaccg tccgcgtctg ccatacaaat aaaatcattc cttgagaatc
     7021 taaaaagatc cactgatgtt cttgatgaag ccacaattca tagcatggaa agacctttga
     7081 atgatctgtc gcttcagaat actgacaatc tactcaatag tattttcggc atatatacag
     7141 ctgattcaac aggaaatgtt gtcagaaaaa atatcgctct ttttgctccg catatctgga
     7201 ataaaagcag tgataacgta aaatacaagc tcggcgtgac gctagacgga tacaagaaca
     7261 atcttcacaa cgagaaacat gctttaggta ttgagttttt tacgttttgt gatggtaatc
     7321 gttatcaatc attagactct agaattatat cactggacgg ccatgccgac gatctcttag
     7381 aggctaggta tgcttgggat aacttttata atgaaccccc tcatatgcgg aagattcttt
     7441 cgtatttaaa gactgaaaat gacatacctt tagagagggt tcataagctt ataaaaacag
     7501 ttttgatttg tcgtgttggt aaaggaatac catataatac tggtgtttct ccggcgggac
     7561 gacctttgta tgatcagttt tttggcatgc ttggcgatca aaacattatc aatacagtta
     7621 tagcaatgca ctctaatgaa gtgcgagtga atttagacaa caaatactgc cagcaacata
     7681 tggtaagcgt tttgactttg ttaagagcca atgctcgtag cgaaagaatt caagaaatta
     7741 tagatttttt gatcgccaac caaacgatcc tccataaagt acacaacgat aagagatata
     7801 gagatctaac taaaaatcac atcagttttg gctaacaaag cgctgcacac ggactaaatt
     7861 aagcttcgct cactgggacg ggctacagcc cgtcccttaa ccaaacgtta atgtctgcaa
     7921 ttcgctcata agggacaacc atactcaaat ctcccacatt gcaggagatt tgagtatgaa
     7981 cacttcatcg tggaacaaag gccgtatcgt aggccaaaaa agaccacttc agatatctca
     8041 tatctggggg atccgaatca ggcttgaact ggaaggtaag acgcgcgatt tggctctgtt
     8101 caatatggcc ctggacagta agctacgagg ctgcgatctg gtaaaactta aagtatctga
     8161 tgttgcatat ggtagctctg tttcaagcag ggcaacggtg ttgcagcaga aaaccggtag
     8221 ccctgtccaa tttgagataa ccaaagggac aagagaagct gttactgcat tgataaaact
     8281 tggtaattta catagtaatg acttcttgtt tcgatcccgg gtcggtacta accagcacat
     8341 atcaacccgg caatacaacc ggatttttca tgggtggata gcaaagcttg gtctcgacga
     8401 ttcgctttac agcacacatt ccatgagaag aacaaaacct taccttatct acaagaaaac
     8461 taagaatctc agggtgatcc aacttctgtt aggccatagg aaactggaaa gcacagtccg
     8521 ttatctgggc attgaagtcg atgatgcgtt agagatctct gaatcgattg aaatctaagg
     8581 ttgtcagggc tgcaatagca gccctgtgcc aacagcggac attatagatg gtatatgtag
     8641 aaagtgaaca tgcgtagatt gtatgattta gccgtcactt aattattgga taactcacac
     8701 aagtatgacc gttgcttatc gcatacattt ggtttccctt aagatttaca aatggaaatg
     8761 tcgtatactc ataatttata gaggtcatat taaatgtaag gaatttatct tcaagttcta
     8821 attttgtaga gtgggcaggg tatgttcctt catttttcat tgtgataata aaaccgatag
     8881 gaaaaaaatg taaagcacaa ataaatgcca catgtccttc gttcataaat gctacacttt
     8941 gagcggatat gtgcattctg tgtgggtaaa accagtagta aatatcatga gtttcctcaa
     9001 aacttgaatt tttacccaaa acataatcct ttaaaggtgt atagaagggg ctatctacgg
     9061 gttctttttt acaatcttca actgaagttg ctgatagcac gtgcccaatc atagccttag
     9121 tgaaagatat gctatcaaaa ggtattctaa tgaatggata tacattcata ccattcatat
     9181 atcgacttaa ctgttcttta aaggactttg ttacattttc aattgcaaca tcgagcccac
     9241 ctaatacctt attgttacag tggctgcaaa tggttctgaa ataagagcca tttttagcat
     9301 ttaatggttt aactggttcc tgaataccaa aaaattcgct aactgttttc tgcaaaacag
     9361 ggcctaaggt tatggcgcac tttggaggaa catgatcttt tgtgagcaag ccatatttcc
     9421 cacaaatatt gcaataacct tcagtaatgc cattgtgctt ccatcgttca ctaattttcg
     9481 tcatttttat tccctcagta gcataagcta tctatacgtt ttttaatcct atcaaagata
     9541 caacttaacg tcaggaaaat gatagtgttt atctaagtaa tacaattaac ttcaacgcgt
     9601 gacagtctgc ttttcgctct tagcggacat tagcataggc tatttaccat aacgcctcat
     9661 tacgcgtacc gctcagacgg cctgagcgcg tttctgacgt atccccgtta aaaacagtaa
     9721 caaaccaccc gaaaatgcac gccagaaacg ctacgtaaga atcta
//
LOCUS       DAJVUP010000162         9738 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.162, whole genome shotgun sequence.
ACCESSION   DAJVUP010000162 DAJVUP010000000
VERSION     DAJVUP010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9738
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.162"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..470
                     /locus_tag="OQQ75_003524"
     CDS             <1..470
                     /locus_tag="OQQ75_003524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001589353.1"
                     /note="type IV secretion system coupling protein; similar
                     to F plasmid TraD; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="HCS1977720.1"
                     /translation="QERPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPD
                     VPEVVSGEDVTQAEQPQQPVSPVINDKKSDSGVNVPAGGIEQELKMKPEEEMEQQLPP
                     GISESGEVVDMAAYEAWQQENHPDTWQQMQRREEVNINVHRERGEDVEPGDDF"
     gene            complement(479..877)
                     /gene="vapC"
                     /locus_tag="OQQ75_003525"
     CDS             complement(479..877)
                     /gene="vapC"
                     /locus_tag="OQQ75_003525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(fMet)-specific endonuclease VapC"
                     /protein_id="HCS1977721.1"
                     /translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELI
                     YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVGPFDQMIA
                     GHARSRGLIIVTNNTREFERVGGLRTEDWS"
     gene            complement(877..1104)
                     /gene="vapB"
                     /locus_tag="OQQ75_003526"
     CDS             complement(877..1104)
                     /gene="vapB"
                     /locus_tag="OQQ75_003526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin VapB"
                     /protein_id="HCS1977722.1"
                     /translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
                     ETWDEWFDGHSVSADFMDNREQPGMQERESF"
     gene            1186..6463
                     /gene="traI"
                     /locus_tag="OQQ75_003527"
                     /pseudo
     CDS             1186..6463
                     /gene="traI"
                     /locus_tag="OQQ75_003527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490592.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer relaxase/helicase TraI"
     gene            6483..7229
                     /gene="traX"
                     /locus_tag="OQQ75_003528"
     CDS             6483..7229
                     /gene="traX"
                     /locus_tag="OQQ75_003528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858383.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus acetylase TraX"
                     /protein_id="HCS1977723.1"
                     /translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
                     VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
                     AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
                     LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
                     AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
     gene            7284..7844
                     /locus_tag="OQQ75_003529"
     CDS             7284..7844
                     /locus_tag="OQQ75_003529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fertility inhibition protein FinO"
                     /protein_id="HCS1977724.1"
                     /translation="MTEQKRPVLTLKRKTEGTATVRSRKTIINVTTPPKWKVKKQKLA
                     EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRD
                     VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
                     YAGARLAKIRRQNRIKAELQAVLDEK"
     gene            7975..8187
                     /locus_tag="OQQ75_003530"
     CDS             7975..8187
                     /locus_tag="OQQ75_003530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HCS1977725.1"
                     /translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
                     VAPRTDWQQFARKRAEHCHRRCRGRG"
     gene            8431..8892
                     /locus_tag="OQQ75_003531"
     CDS             8431..8892
                     /locus_tag="OQQ75_003531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HCS1977726.1"
                     /translation="MRKYIPLVLFIFSWPVLSADIHGRVVRVLDGDTIEVMDSLKAVR
                     IRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQRDRYGRILGQVYAPDGMNIN
                     QFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDADPVPPWIWRHRK"
     gene            8938..9147
                     /gene="hha"
                     /locus_tag="OQQ75_003532"
     CDS             8938..9147
                     /gene="hha"
                     /locus_tag="OQQ75_003532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1977727.1"
                     /translation="MAKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSNSERESFNSAA
                     DHRLAELIIGKLYDRIPKEIWKYVR"
     gene            9186..>9738
                     /locus_tag="OQQ75_003533"
     CDS             9186..>9738
                     /locus_tag="OQQ75_003533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HCS1977728.1"
                     /translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
                     AERILSSGEYWQRQTTLLTEREVSFMKGLFRIVDMTRWYLCPQVRVADIVQLNGNIRP
                     RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
                     AGIPLLRSHDARKLLQMTGEWLNT"
BASE COUNT         2303 a         2393 c         3057 g         1985 t
ORIGIN      
        1 atcaggaacg accgaaggtc gctccggagt ttattccgcg tgacatcaac ccggaaatgg
       61 agaaccgtct gagtgccgta cttgccgcaa gggaagcaga aggtcgtcag atggccagcc
      121 tcttcgaacc ggatgtcccg gaggttgttt ccggagaaga cgtgactcag gctgaacagc
      181 cgcaacagcc ggtgtctcct gtcatcaacg ataagaagtc agattcaggt gtgaatgttc
      241 cggcaggggg gatcgagcag gagctgaaaa tgaaaccgga agaagagatg gaacagcaac
      301 tgccacccgg gatcagtgaa tccggtgaag tggtggatat ggccgcttat gaggcatggc
      361 agcaggaaaa tcatccggac acctggcagc agatgcagcg tcgtgaagag gtgaacatca
      421 atgtgcaccg ggaacgcggg gaggatgttg agccgggaga tgatttctga tgaacaggtc
      481 agctccagtc ttcagttctc aggccgccca cacgttcaaa ttcccgggtg ttattagtca
      541 caataatcag cccccgactg cgggcatgac ctgcgatcat ttgatcaaat ggcccgacag
      601 ggcgtccctg acgggcaagt tctgctctta tctggccggt gtgtgtggct gcagcagcgt
      661 cgtaatccag aacatcaatg cgggaaacaa atccctcgat cacagcgaga ttacgttcag
      721 gcatctggct tttttctgca ccatatatca gctccatcag ggtgaccgaa ctgatacaca
      781 ttctcccctg gttcaggtta aaacgctccc tgacgctggc gggtttgttc tttatcgtaa
      841 aaatgcagat gttggtatcg agcataaact tcagcatcag aatgactccc tttcctgcat
      901 gccgggctgt tccctgttat ccataaaatc ggcgctgacg ctgtgtccgt cgaaccattc
      961 gtcccatgtc tctccggctg gcgtaatgat tctggttcgt ccgacagcaa tcacttcaac
     1021 gcgttttacg ttttccggca atgcaaccgc ttttggcagt ctgaccgcct ggctgcggtt
     1081 gctgagaaat acggtggttt ccattatttg cctccttatg tggatatgtc ttgtgtatat
     1141 ccattgtggg attgatgccg ggatatgtca aagggatata cgtttatgat gagtatcgcg
     1201 caggtcagat cggccggaag tgccggtaat tattatacca acaaggataa ttactatgtg
     1261 ctgggcagca tgggagaacg ctgggccggc cagggggctg aacaactggg gctgcagggc
     1321 agtgtcgata aggatgtctt tacccgcctt ctggagggca ggctgccgga cggggcggat
     1381 ttaagccgca tgcaggatgg cagtaacagg catcgtcccg gctacgacct gaccttctcc
     1441 gctcccaaaa gtgtctccat gatggccatg ctcggggggg acaaacgtct tattgaagca
     1501 cataaccagg ccgtggattt tgctgtccgt catcatccgt gtggaggcac tggcctccac
     1561 acggatgatg acggacggac agtcagaaac ggtgctgacc ggtaatctgg tgatggcact
     1621 gtttaaccac gacaccagtc gcgatcagga accacagtta cacacgcatg cggtggtgac
     1681 taatgttacg cagcataacg gcgaatggaa gacactgagc agtgacaaag tggggaaaac
     1741 ggggttcatt gagaatgtgt acgctaatca gattgccttt ggcaggctct accgggaaaa
     1801 actgaaagag caggttgagg cgctgggcta tgaaactgaa gtggtcggta agcacggtat
     1861 gtgggaaatg ccgggtgtac cggtggaggc cttttccgga cgctcacaga ctatccggga
     1921 ggccgtcggg gaagacgcct cgctgaaatc ccgggatgtg gcggcgctgg atacgcgtaa
     1981 atccaaacag cacgtcgatc ctgaagtcag aatggccgag tggatgcaga cgctgaagga
     2041 aaccgggttc gacatccggg catatcgtga cgcagcggaa caacgggcat atacccgcac
     2101 gcagacaccc ggacccgctt cacaggacgg gccggatgtg cagcaggcgg tgacacaggc
     2161 cattgccgga ttaagtgaac gcaaagtgca gtttatgtat acggacctgc tggccaggac
     2221 ggtcggcata ctgccgccgg aaaatggtgt gattgaacgg gcacgcgccg gtatcgatga
     2281 ggccatcagc cgtgagcagc ttatccccct cgatcgtgag aaggggctgt tcacgtccgg
     2341 gattcatatg ctcgatgagc tgtcagtccg ggcactcagt cgtgacatca tgaaacagaa
     2401 ccgggtgacc gtacatccgg agaaaagtgt cccccggacg gccggttaca gctatgccgt
     2461 cagtgttctg gcacaggacc gtccgtcgct ggccattgtg tccgggcagg gcggtgcagc
     2521 cgggcagcgt gagcgggtgg ctgaactggt catgatggcc cgggagcagg ggcgggaggt
     2581 gcagattatc gctgctgacc gtcgctcgca gatgaacctg aagcaggatg aacggctgtc
     2641 cggtgaactg ataaccggac gtcgtcagtt gctggaaggc atggccttca cgccgggcag
     2701 taccgttatc gtcgaccagg gcgaaaaact ctccctgaaa gagacgttaa ccctgctgga
     2761 tggtgccgca cgtcataacg tacaggtcct gataactgac agcgggcagc gaaccggtac
     2821 aggcagtgca ctgatggcca tgaaggatgc cggggtgaac acatatcgct ggcagggggg
     2881 agaacagcga ccggccacca tcatcagtga accggaccgt tatgtccgct atgcccggct
     2941 ggccggagat tttgcggcca gcgtgaaagc cggagaagag agcgtggcac aggtcagcgg
     3001 agtacgggaa caggccatac tgacacaggc cattcgcagt gagctgaaaa cacagggcgt
     3061 gctcggacac ccggaggtaa ccatgaccgc cctgtcaccg gtctggctgg acagccggag
     3121 ccgttatctg cgggatatgt accgcccggg aatggtgatg gagcagtgga acccggagac
     3181 acgcagtcat gaccgctatg tgacagaacg tgtgacggcg cagagtcaca gcctgaccct
     3241 gcggaatgcg cagggcgaaa cgcaggtggt gcgtatttct tccctggaca gcagctggtc
     3301 gctgttccgg ccggaaaaaa tgccggtggc agacggtgag cgtctgaggg tgacagggaa
     3361 aattcccgga ctccgcgtct ccggcggtga ccgcctgcag gtggcatccg tcagtgaaga
     3421 tgcgatgacg gttgttgtgc cgggacgggc tgaaccggcc accctgcctg tgagcgattc
     3481 accgttcacg gcactgaagc tggagaacgg ctgggtggaa acgcccgggc attccgtcag
     3541 cgacagtgcg acggtttttg cctccgtcac acagatggca atggacaatg ccaccctgaa
     3601 cggtctggcc cgcagtggtc gtgatgtccg gctgtattcc tcactggatg aaacccgtac
     3661 tgcggaaaaa cttgcccgcc atccttcctt tacggtggtt tctgagcaga taaaggcgcg
     3721 tgccggtgag acattgctgg aaaccgctat cagtctgcag aaagccgggc ttcacacgcc
     3781 ggcacagcag gccattcatc tggcccttcc tgtgctggaa agtaaaaacc tggccttcag
     3841 catggtggac ctgctgacag aggcgaagtc gtttgctgca gaaggaaccg gttttgctga
     3901 cctgggaggg gaaatcaatg cgcagataaa acggggtggt ttactgtatg tggatgtggc
     3961 aaaaggctat ggcacaggcc tgctggtttc ccgtgcgtcg tatgaggcag aaaagagcat
     4021 tcttcgccat attctcgaag gtaaggaggc ggtcacgccg ctgatggaga gagtacctgg
     4081 cgaactcatg gagaaactga catcaggaca gcgcgccgcc gcccgtatga tactggaaac
     4141 gtccgaccgt ttcacggtgg tgcagggcta tgccggtgtg ggtaagacca cacagttccg
     4201 ggcggtgatg tcagccgtga acatgctgcc ggagagtgaa cgtccccgtg tcgtggggct
     4261 ggggcccaca caccgtgcgg tcggggagat gcgcagcgcc ggcgtggatg cacagacact
     4321 ggcgtccttt ctgcatgaca cgcagctgca gcagcgcagc ggagaaacgc cggatttcag
     4381 caacacgctg ttccttctcg atgagagctc tatggtgggc aataccgaca tggcacgggc
     4441 atacgccctg attgcggccg gtggcggtcg ggctgtggcc agcggtgaca cggaccagct
     4501 gcaggccatc gcgcccggtc agcctttccg tctccagcag acgcgcagtg ctgccgatgt
     4561 ggtcatcatg aaggagattg tgcgtcagac gccggaactg cgggaggcgg tatacagcct
     4621 gattaaccgg gatgtggaaa gggcgctgtc cgggcttgag cgtgtgaaac cgtctcaggt
     4681 gccacgtctg gagggcgcat gggcaccgga gcactccgtg acggagttca gtcacagcca
     4741 ggaagcgaaa ctggcagaag cgcagcagaa ggcgatgctg aaaggcgagg cttttccgga
     4801 tgtccccatg acactgtatg cagccattgt ccgcgactat accggcagga caccggaagc
     4861 acgggagcag acgctgattg tcacgcacct gaatgaggac cggcgcgtac tgaacagcat
     4921 gattcatgat gcacgggaaa aggccggaga actggggcag gtgcaggtca tggtgcctgt
     4981 cctgaacaca gcgaatatac gcgacgggga gctgcgtcgt ctctccacct gggagaataa
     5041 cccggatgcc cttgccctgg tggataatgt gtatcaccgg attgccggta tcagcaagga
     5101 tgacgggctg ataaccctgc aggatgcgga aggtaacacg cggctgattt cgccccggga
     5161 ggcggtggct gaaggcgtca cgctgtacac cccggacacc atccgggtgg ggaccggtga
     5221 caggatacgc ttcacgaaga gtgaccggga gcgcggttat gtggccaaca gcgtctggac
     5281 ggtgacagcg gtttccggtg acagtgtcac actttctgac ggtcagcaga cccgtgtgat
     5341 tcgccccggt caggagcggg cagagcaaca tattgacctg gcctatgcca tcaccgccca
     5401 tggtgcacag ggggcgagtg aaacctttgc catcgcgctt gaaggcacgg aaggtaaccg
     5461 gaaactgatg gccggctttg agtcagccta cgtggccctg tcgcgtatga agcagcatgt
     5521 gcaggtgtac accgataacc gtcagggctg gacggatgcc atcaacaatg ccgtacagaa
     5581 aggaactgcc cacgatgtgt ttgagccgaa accggaccgg gaggtcatga atgcagagcg
     5641 gctgttcagt acggcgcggg agctgcggga cgtggcggca ggccgtgccg ttctccgtca
     5701 ggcggggctg gccgggggag acagtcctgc acggtttatt gctccgggac gtaaatatcc
     5761 gcaaccgtat gtggcactgc cggcgtttga ccgtaacggc aagtccgccg gtatctggct
     5821 gaacccgctg accacggatg acggaaacgg gctgcgggga ttcagcggtg aaggtcgggt
     5881 aaaaggcagc ggggatgcgc agttcgtggc tctgcagggc agccgtaacg gagaaagcct
     5941 gctggctgat aatatgcagg atggcgtccg gattgcccgt gataatcctg acagtggtgt
     6001 ggtggtaaga atcgccggtg aaggccgtcc gtggaatccc ggtgccatca ccggtggccg
     6061 cgtgtggggg gatatcccgg acaacagcgt ccagccggga gccggaaatg gcgaaccggt
     6121 cacggcagag gtactggcac agcggcaggc tgaagaggcc atccgccgtg aaacggaacg
     6181 tcgcgcagat gaaattgtcc gtaaaatggc agagaacaaa cctgacctgc cggacggcaa
     6241 aacagagcag gctgtcaggg aaattgccgg gcaggagcgt gaccgggctg ccataactga
     6301 acgggaagcc gcgctgccgg agagtgtact gcgtgaacca caacgggtgc gggaagcggt
     6361 ccgggaagtt gcccgggaaa atttgctgca ggagcgtctg cagcagatgg agcgggatat
     6421 ggttcgtgac ctgcagaaag agaaaacccc gggcggagac tgatacagga agacaaacac
     6481 tgatgacaac ggataacacg aacacgacac gtaacgattc actggctgca cggaccgata
     6541 cctggttgca gtcatttctg gtctggtcac ccggacagcg ggatatcatc aaaacggtgg
     6601 cactggtgct gatggtactg gaccacatca atctgatatt ccagctgaag caggaatgga
     6661 tgtttctggc cgggcgagga gcctttccgc tttttgccct ggtgtggggg ctgaatctgt
     6721 cccgtcatgc gcatatccgg caaccggcca ttaaccggct gtggggatgg ggaattattg
     6781 cccagttcgc atattatctg gcaggctttc cctggtatga ggggaatatc ctgtttgcct
     6841 ttgcagtggc ggcacaggtg ctgacgtggt gtgaaacgcg cagtgggtgg cgtacagcag
     6901 cggccatact cctgatggcc ctgtgggggc ctttgtccgg caccagttac ggtattgccg
     6961 ggttgctgat gctggcagtc agcaaccggc tgtaccgggc ggaagacaga gcggaacgtc
     7021 tggcgctggt cgcctgcctg ctggctgtta ttccggcgct taaccttgcc accagtgatg
     7081 cagcggcggt ggccggtctt gtgatgacgg tgctgaccgt tggtctggtg ttgtgtgccg
     7141 gaaaatcatt accccgtttc tggcccggag actttttccc gacgttctat gcctgtcatc
     7201 tggctgtgct gggcgttctg gcgctgtgac gggtgtggta tctttggccg caagaggatg
     7261 attcgtcaga ggcagaacac agcatgacag agcagaagcg accggtactg acactgaagc
     7321 ggaagacaga gggaacagcg actgtccgca gccggaaaac catcatcaat gtcaccacgc
     7381 caccaaagtg gaaggtgaaa aagcagaagc tggccgagaa agcggcccgt gaagcagagc
     7441 tggcggcaaa aaaagcgcag gccagacagg cgctgtccat ttatctgaac ctgcccacgc
     7501 tggatgaggc tgtgaatacc ctgaagccct ggtggccggg attatttgac ggtgacacgc
     7561 cccggcttct ggcctgcggt atccgggacg tgttactgga agacgtggcg cagcggaata
     7621 tcccgctctc gcataaaaaa ctgcgcaggg cgctgaaggc catcacccgt tcagaaagct
     7681 atctgtgtgc catgaaagcc ggtgcctgcc ggtatgacac ggaagggtat gtgacggagc
     7741 atatttctca ggaggaggaa gcgtatgcgg gagcgcgtct ggcgaaaatt cgtcgccaga
     7801 accggataaa ggcagaactt caggccgtgc ttgatgagaa ataaaaaaag cctcccccag
     7861 agagaggagg cagggaaata aggcttaaaa ggaaataact tccgcttccg aaaggaagcc
     7921 agtccactga attatttatc acaataatac tgacaactaa agggggacaa gaaaatgaat
     7981 ggattcagaa acagttcacg gaacggccag gtctggcgtt accagcgtgc cggcgggcgg
     8041 gccgttattc tggaagtcag tggacgctgg atggaagcgg cagaagcatg gcgacgggct
     8101 gcctgtgttg cgcctaggac agactggcag cagtttgccc ggaaaagggc tgaacactgc
     8161 caccggcgct gccggggaag ggggtaacga aaaaagcagc cttcattact ccaggagtca
     8221 gaaggctgaa aggagtttat gagatttgct tcttaatatc cggtcgggca gtatgaccgg
     8281 acagttctga gtagcacaga gtcttttccg cattaagtcg attttttata ttttgtgatt
     8341 aatttcacaa aataaggtgt tattcaatgt gtgctgccct attcaggggg gctgaaatac
     8401 aggtgccatt tatctgatat ggagaataac atgaggaaat atattccact ggtattattt
     8461 atcttttcat ggccggtatt gtctgcagat attcatggac gggttgttcg tgtactggac
     8521 ggtgatacca tcgaggtcat ggactcactg aaggcggtgc ggatcaggct ggtaaatatt
     8581 gatgcaccgg aaaagaaaca ggattatggc cggtggtcaa cagacatgat gaaatcactg
     8641 gttgcaggaa aaacggttac cgtcacatat tttcagcgag atcgttatgg tcgtattctc
     8701 gggcaggttt atgcaccaga cggaatgaat attaatcagt ttatggtccg ggccggggct
     8761 gcctgggtat atgagcagta caacacagat cccgtgctac ctgtccttca gaacgaagcc
     8821 agacaacaaa aacgtgggct ctggtcagat gctgatccgg ttcccccctg gatatggagg
     8881 caccgtaaat aaagcgatgg caatcctatc attcatctgt tctcagcggg aataaaaatg
     8941 gcaaaaacaa aacaggaatg gctgtatcag ttacggcgat gttcatcagt caatacgctg
     9001 gaaaaaatta ttcataaaaa cagagacagt ttatcaaaca gtgaacgtga atcatttaat
     9061 tcagcagcag accaccggct agcggaatta atcatcggaa agttatatga caggatacca
     9121 aaagagatat ggaaatatgt aaggtaataa ttcagcaata attaattgcc aggagcagat
     9181 aaataatgaa gttgattatt tttattctca ttgttctgat tattgcagcg ctacttatcc
     9241 ggattatcct cagaagtgta aatcagcatt ctcctttgct gatgcaattg catgcggcag
     9301 gtatacggac cggtgatgca gagcgaatac tgtccagcgg tgaatactgg caacgtcaga
     9361 cgacgctgct gacagaaagg gaagtcagtt ttatgaaagg actgttcaga attgtggata
     9421 tgacgcggtg gtatctgtgt ccgcaggtac gggtcgcgga tatcgtccag ctgaacggga
     9481 atatccggcc acgatcacgc cagtggtggc agttattcag gatggtgtct cagtggcatg
     9541 ttgatgtggt tatcgttgag ctgcgttcgt tcagtattgt tgcagcagta gagctggatg
     9601 atgccagcca tttacgaccg gaacgcagac gccgggatat tcttctggaa gaggttctga
     9661 ggcaggctgg tattccgttg ctcagaagcc acgatgccag aaaactgctg cagatgaccg
     9721 gagaatggct gaatacaa
//
LOCUS       DAJVUP010000163         9657 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.163, whole genome shotgun sequence.
ACCESSION   DAJVUP010000163 DAJVUP010000000
VERSION     DAJVUP010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9657
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.163"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            123..743
                     /gene="fklB"
                     /locus_tag="OQQ75_003534"
     CDS             123..743
                     /gene="fklB"
                     /locus_tag="OQQ75_003534"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015742582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1977729.1"
                     /translation="MTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIAD
                     ALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTES
                     GLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE
                     ALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL"
     gene            1052..2464
                     /gene="cycA"
                     /locus_tag="OQQ75_003535"
                     /gene_synonym="dagA"
     CDS             1052..2464
                     /gene="cycA"
                     /locus_tag="OQQ75_003535"
                     /gene_synonym="dagA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine/D-alanine/glycine transporter"
                     /protein_id="HCS1977730.1"
                     /translation="MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLG
                     SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF
                     TGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
                     EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGF
                     QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV
                     VPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA
                     FAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILC
                     SYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWF
                     IALGLGWLFIGKKRAAELRK"
     gene            complement(2509..3171)
                     /gene="ytfE"
                     /locus_tag="OQQ75_003536"
     CDS             complement(2509..3171)
                     /gene="ytfE"
                     /locus_tag="OQQ75_003536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein YtfE"
                     /protein_id="HCS1977731.1"
                     /translation="MAYRDQPLGELALSIPRASALFRKYNMDYCCGGKQTLARAAARK
                     ELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE
                     RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
                     DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALA
                     GE"
     gene            complement(3279..4244)
                     /locus_tag="OQQ75_003537"
     CDS             complement(3279..4244)
                     /locus_tag="OQQ75_003537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1977732.1"
                     /translation="MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLI
                     ALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLP
                     VVIPVFANLLYSQRDGKLAWGKLAPALVCIGIGLACVNIAELNHGLPDFDWARYTSGI
                     VLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQ
                     TPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGL
                     LYTFLIRQQMPPLMTLSGIALLVVGVVIVVRAKPEKPLTESVSES"
     gene            complement(4352..5212)
                     /gene="qorB"
                     /locus_tag="OQQ75_003538"
     CDS             complement(4352..5212)
                     /gene="qorB"
                     /locus_tag="OQQ75_003538"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HCS1977733.1"
                     /translation="MIAITGATGQLGHYIIESLMKTVPASQIVAIVRNPAKAQALAAQ
                     GITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYT
                     SLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGA
                     AGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVT
                     YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDNSKTLSKLIGRPTTTLAE
                     SVSHLFNVNN"
     gene            5301..5681
                     /locus_tag="OQQ75_003539"
     CDS             5301..5681
                     /locus_tag="OQQ75_003539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HCS1977734.1"
                     /translation="MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREG
                     THRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEK
                     VAALADWIELNLPEVLAVRDERAA"
     gene            complement(5810..7753)
                     /gene="cpdB"
                     /locus_tag="OQQ75_003540"
     CDS             complement(5810..7753)
                     /gene="cpdB"
                     /locus_tag="OQQ75_003540"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HCS1977735.1"
                     /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD
                     TATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDVHPVYK
                     ALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDT
                     EVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGAD
                     VVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEEADIT
                     KGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAED
                     SKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQ
                     GDPDLAKLPVLSAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKAS
                     GKEVKEWLECSAGQFNQIDPNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYD
                     GECQMINANAERIKNLTFNGKPIDPNAMFLVATNNYRAYGGKFAGTGDRHIAFASPDE
                     NRSVLTAWIADESKRAGEIHPAADNNWRLAPIAGDKKLDIRFETSPSDKAAAFIKEKG
                     QYPMNKVATDDIGFAIYQVDLSK"
     gene            7943..8683
                     /gene="cysQ"
                     /locus_tag="OQQ75_003541"
     CDS             7943..8683
                     /gene="cysQ"
                     /locus_tag="OQQ75_003541"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HCS1977736.1"
                     /translation="MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAA
                     HTVIMDGLRTLTPDIPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI
                     ALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHAD
                     AELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGA
                     HVHDWQGKPLDYTPRESFLNPGFRVSIY"
     gene            8895..>9657
                     /locus_tag="OQQ75_003542"
     CDS             8895..>9657
                     /locus_tag="OQQ75_003542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977737.1"
                     /translation="MLPRIRHNNFIGAVELFVKSSHTKTHSNNFFNNIQHAFKKKDWV
                     SNYDSLLTLWEFFRCATQIDKDSYQVLSSKNETVKAMDKFLISFSLKDNGAEYTMTLR
                     GSGFEYEEIPITINEYNSFMDFKNREFPLEQNRRLYAWDILQKKQSDIPKRIKGYIHQ
                     AIGDVSLGYALLEDIVSKLKRGKFELQIPGGGIKECDGWYIYEKIIDDNFAIVIESLG
                     FALKIYGGDERFRNGSSVVLEDEDYSLIYNFLVNAG"
BASE COUNT         2340 a         2342 c         2469 g         2506 t
ORIGIN      
        1 cgggatattg ctattgtttc tttttccccg ggatttgtca tcattcctgt gacaaagttt
       61 tacccaaaga agtgtggctg atatgctgcc cgctactttt ataccctaag aaaggaaata
      121 cgatgaccac cccaactttt gacaccatcg aagcgcaagc aagctacggc attggtttgc
      181 aggtagggca acaactgagt gaatctggcc tggaagggct gctgccagaa gcactggttg
      241 caggtattgc cgatgcgctg gaaggcaaac atccggctgt tccggttgat gtggtgcatc
      301 gcgcgctgcg tgaaatccac gaacgcgccg atgccgttcg tcgtcagcgt ttccaggcga
      361 tggctgctga aggtgtgaaa tacctggaag aaaacgccaa aaaagaaggt gtgaatagca
      421 ccgaatctgg cctgcaattc cgcgtgatca accagggtga aggcgcaatt ccggcacgta
      481 ccgaccgcgt tcgtgttcat tacaccggta aactgatcga cggcaccgtg tttgacagct
      541 ccgttgctcg tggtgaaccc gctgaattcc cggttaacgg cgtgatccct ggctggattg
      601 aagcactgac tctgatgccg gtaggttcta aatgggaact gactatcccg caggaactgg
      661 catatggcga gcgcggcgca ggtgcatcca tccctccgtt cagcaccctg gtgtttgaag
      721 tcgaactgct ggaaatcctc taagcagcgc attctgttcc cctcgaacca gaggggagca
      781 ggcattcagc aataaaccct tcagtttgcc aaacggcgct attttgtgtt gcaaagaccc
      841 cgtaagcgtg tatttttgtg agatgtttcg cgttatcacc gtgatatgac actcacttta
      901 aacataaaat taacattaga tctaaatctt agtattcatc ccgcgtattg ttacctaata
      961 tcgatgagtc ccgatacaga ttcgtcgtat catagactga ctaaaggccg tagagcctga
     1021 acaacacaga caggtacagg aagaaaaaaa catggtagat caggtaaaag tcgttgccga
     1081 tgatcaggct ccggctgaac agtcgctacg gcgcaatctc acaaaccgac atattcagct
     1141 tattgccatt ggcggtgcca ttggtacggg gttgtttctg gggtctggca aaacgattag
     1201 ccttgccggg ccgtcgatca ttttcgttta tatgatcatt ggttttatgc tctttttcgt
     1261 gatgcgggca atgggggaat tgctgctttc gaatctggaa tacaaatctt ttagtgactt
     1321 cgcttccgat ttactcgggc cgtgggcagg atatttcact ggctggactt actggttctg
     1381 ctgggttgta accggtatgg cagacgtggt ggcgatcacg gcttatgctc agttctggtt
     1441 ccccgatctc tccgactggg tcgcctcgct ggcggtgata gtgctgctgc tgacgctcaa
     1501 ccttgccacc gtgaaaatgt tcggtgagat ggagttctgg tttgcgatga tcaaaatcgt
     1561 cgccatcgtg tcgctgattg tcgtcggcct ggtcatggtg gcgatgcact ttcagtcacc
     1621 gactggtgtg gaagcgtcat tcgcgcattt gtggaatgac ggcggctggt tcccgaaagg
     1681 tttaagtggc ttctttgccg gattccagat agcggttttc gctttcgtgg ggattgagct
     1741 ggtaggtaca acagctgcgg aaaccaaaga tccggagaaa tcactgccac gcgcgattaa
     1801 ctccattccg atccgtatca ttatgttcta cgtcttcgcg ctgattgtga ttatgtccgt
     1861 gacaccgtgg agttcggtag tcccggagaa aagcccgttc gttgagctgt ttgtgttggt
     1921 aggtttgcct gcggctgcca gcgtgatcaa ctttgtggtg ctgacctctg cggcgtcttc
     1981 cgctaacagc ggcgtcttct ctaccagccg tatgctgttt ggtctggcgc aggaaggtgt
     2041 ggcaccgaaa gcgttcgcta aactttctaa gcgcgcagta ccagcgaaag ggctgacctt
     2101 ctcctgcatc tgcctgctcg gtggcgtggt gatgctgtat gtgaatccta gcgtgattgg
     2161 tgcgttcacg atgattacaa ccgtttccgc gattctgttt atgttcgtct ggacgattat
     2221 cctttgctcg tacctggtgt accgcaaaca gcgtcctcat ctgcatgaga agtcgatcta
     2281 caagatgccg ctcggcaagc tgatgtgctg ggtatgtatg gcgttctttg tgttcgtggt
     2341 cgtgttgctg acactggaag atgacactcg ccaggcgctg ctggttaccc cgctgtggtt
     2401 tatcgcactg gggctgggct ggttgtttat tggtaagaag cgggctgctg aactgcggaa
     2461 ataaccgcat tatcatgctg gatggcgcaa tgccatccag cttttagatc actcacccgc
     2521 cagcgcgcgt gggaacagta cattgttttc cagactgatg tgatccatca ggtcatcaat
     2581 cagttcatta atgccgttat acatcgcttt ccaggtggtg caggcttctg gcggcggtgt
     2641 gacgttattg gtagtgtgtt tgatcacttc cagcagttcg cccgcttcat cgtgctcgct
     2701 ttccattacg ctgattggcc ccattgcctg gctgcccatg ccttgtttga tcatcgggaa
     2761 gaggatctgc tcttctttca tcatgtggct ggaaagctct tcatgcagca tggtcaggta
     2821 ttttgtcagc ccttttggca cgctcggttt gtcggcgtga acgcgctcga ctttagtcgc
     2881 ttgcaggatc agctccggca gttgctcgcg gtgacgatcg tggtagcgca cgatgatatg
     2941 gtcaatgatt tctgccagcg gggcgctacg ccagtctttc tcaatcggtt gttcagcaag
     3001 ctttgccagt tcagcttcaa tgacctcaac atccagttct ttacgtgccg ccgcgcgcgc
     3061 cagcgtctgc ttaccgccac agcagtaatc catattatat ttacgaaaca gagctgaagc
     3121 gcgaggaata gagagcgcca gttcacctaa aggttggtcg cgataagcca tagctgatac
     3181 ctcattctta ataagataag atgtatttta aatacatctt taaggcaaaa gctataaccc
     3241 ttacgtagca gaggcttatt taactcacag ccagtatgtc aactttctga gacagattca
     3301 gttaaaggct tttccggttt tgctctgact acaatgacca cgccaaccac taacagcgcg
     3361 ataccgctca gcgtcatcag cggcggcatt tgctggcgta tcaaaaaggt gtacagcaaa
     3421 cctgccagtg tttcgaaaac gatcagcggc ccgagaatca ctgtcggtaa tcgctggctg
     3481 gcgacgttcc agcagagtgc gccaacccat gagcaaagca cggctatcgc aaccatcaga
     3541 ctaataaaca ccagcggacg ggggccaaaa ggtagggaga agtccggcgt ttgcgtattc
     3601 agccagtaac aggcgacgag atagccgatg agagaaaccg gcagtgtgac cagcgcctgc
     3661 gccgtcgccc acatcatcgg atgtttgtcg ggattctccc gcagccagcg ggcgttgcgc
     3721 agggcatacc atgcccagca gaccacggaa actaacgcta gcacgatgcc tgaggtataa
     3781 cgtgcccagt caaaatcggg gagtccgtgg tttaactcag caatattcac acacgccagg
     3841 ccgatgccaa tacaaaccag tgccggggcg agttttcccc acgcgagttt gccgtcgcgc
     3901 tggctataaa gcagattggc aaaaacggga atcaccaccg gcagggtgcc gataatcatc
     3961 gtggaaacag gcgcaccagt acgttgaatg gcactggcaa ggcagaagta atagatgagg
     4021 ttgcccatca tagtgagcat caaggcggta agccagtcgc gacgcgccaa ctgacgcaga
     4081 cgcacgcgtc ccagccaggc aatgggcagc gcaattaacc ctaacgccag ataacgcccc
     4141 atcgactgca acatcgccgg gtattccggt acgatcaacg gcccgacaaa aataagcccc
     4201 cacatcaacc ctgctaacag ggcgtacagc acgccgctaa tcattactgg catccattgg
     4261 tctgtcagaa gaaagttcag gaagcagaca tgattgctcc cggcatcccg tcattattag
     4321 agaggatgcg ggaggatgcc actttaatta actagttatt aacattaaaa agatggctta
     4381 cgctttcggc taacgttgtc gttgggcggc caatcaattt gctaagcgtt ttgctgttat
     4441 caaacagacc acctttcgat gcgccaacgt cagaatccgc cagcatatcc gccagtccgt
     4501 cgggcagtcc gacgcttttc agtgccgcgg cgaaatcggc ttcgctcaga ttttgatagg
     4561 taacctgttt gccgctctgt ttggtcagct ctgccgctaa ctgtgtcaac gtccaggcac
     4621 tatcgcccgc cagttcgtaa accttgcctt cgtgaccggc ttcgctaatc acgcgtgccg
     4681 cagctgccgc ataatctgcc cgcgttgctg aggcgatttt gccatcgccc gccgcaccga
     4741 taaatacgcc gtgttccagt gctgccgggg cgctggcgag gtagttttcg ctgtaccagc
     4801 cgttgcgcag cagggtgtaa acgatgccag aatcagccaa cattttctcc gtctcaatgt
     4861 gctcatcggc gaggccgagc ggggaggtat ctgcatgtag caggctggta taagcgataa
     4921 atttcacgcc agccgccttt gcggcattaa taacattacg atgctgcggg gcacgttgac
     4981 ccacttcgct ggaagagatc agcagtagtt tttccactcc ctgaagtgca gatgtcagtg
     5041 cggcttcatc gccgtagtca gcctgacgca cggtaatgcc ttgtgctgcc agagcctggg
     5101 cttttgccgg attacgaacg atagccacta tttggctggc aggaaccgtt ttcatcaagg
     5161 attcaataat atagtgacca agttggccag tggcaccagt aatagcgatc atgggaagtc
     5221 tccatcgttt tgtcttgtgt ttaaatacgc taacacctaa acttactttt agtaagtacg
     5281 tacaaaaagg taagtatgaa atgagtcagg ttagcctgtc gcaacaactg aaagagggta
     5341 atctctttgc ggaacagtgc ccgtcgcgcg aggtgttgaa acacgtcacc agccgttggg
     5401 gggtgttgat tctggtggcg ctacgcgaag gtactcatcg ctttagcgac ctgcggcgca
     5461 aaatcggcgg ggtgagcgaa aagatgcttg cgcagtcgtt acaggcgtta gaacaggatg
     5521 gttttcttaa ccgtatcgcg tatccggtgg tgccaccgca tgtggaatat agcctcacgc
     5581 cgctgggcga gcaggtgagc gaaaaggttg ctgcactggc ggactggatt gagttgaatt
     5641 tgcccgaggt gttggcggtg cgggatgaac gtgcggcata actgccggat gcgctgagct
     5701 tatctggtct acggtgcatg gctggtaggg cggataagat gcgccagcat cgcatccgcc
     5761 aataaatgcc ggatgcggtt gataatttat agaccgaaaa agaagtgttt tacttactca
     5821 aatccacctg ataaatcgca aacccgatat catcggtcgc gactttattc atcggatatt
     5881 gccctttctc tttaataaac gctgcggctt tatctgacgg ggaagtttcg aaacggatat
     5941 ccagtttctt atcgccagct atcggtgcta aacgccagtt gttatctgcc gccgggtgaa
     6001 tttctcccgc acgtttcgac tcatcagcaa tccacgctgt cagcaccgag cggttctcat
     6061 ccggtgaagc aaaagcgata tgtctgtcgc ccgtaccggc aaatttgccg ccgtaagcgc
     6121 gatagttatt ggtggcaacg aggaacatag cgttcggatc aatcggcttg ccattaaagg
     6181 tcaggttctt aatccgctct gcattggcat taatcatctg gcactcgccg tcatagcggg
     6241 cgggttgggt aacatcaatc tgataattca caccatcaat aacatcaaag ttataagtgc
     6301 ggaaaccatc ccagttgatg agtgactgtg gtttcgtgct gttaggatca atctggttaa
     6361 actgtccggc ggagcactcc agccactctt tcacctcttt accgctggct ttcactacaa
     6421 tcagcgtatt ggggtagaga taaagatcgg cggcattacg gaaggtcaac tggccttttt
     6481 ccacctccac atagcttgcc gggtcatttt tgcgaccacc aactttaaac ggtgcggcag
     6541 ctgaaagcac cggcagtttt gccagatccg gatcgccctg aatgtaatgt tcgacatacg
     6601 ctttttgcgc gttgttcacg acttgcacgg tcggatcgtc ctgcaccagc gccagatagc
     6661 tatacatatt gtcggcagat ttaccgattg gcttgctgac gaactggcgt gtggcatcgt
     6721 gatcggcttt gagtgtttct accagcttgc tgtcttccgc cgcgagggat tttttattgg
     6781 cgatgtcgta aatcggccgt gcttccgctt tcgcctgcgt cacctgccat ttaccgctgt
     6841 cattactgag ttgtaagtcg accaccccaa gatgatcgcc ccacatgccc ggcattaccg
     6901 ccggaacacc attcagcgtg cctttggtga tatcagcctc ttcgatatca gcaaaatctt
     6961 tacccgggaa aacggcgtga gcatggccaa acataatggc gttaacgccc ggaatttcac
     7021 tgaggtaata aactgagttt tccgccatta ctttatacgg atcggcagac agcccggaat
     7081 gcgccagaac gacaacgaca tcggcacctt tctcgcgcat ttcaggcacg tatttgcgca
     7141 cggtttcggt aatatcattc accgtcactt ttccggataa attagcttta tcccagccca
     7201 tgatttgcgg cggcacgacg ccaatatagc caatcttcag cgtctgtttt tttccgtctt
     7261 tatcgaccac ttcggtatct ttaattaaat acggtgtaaa cattggctgt ttggttctgg
     7321 cgtcaatgac gttggcattt acataaggga atttcgctcc cgccagcgca tttttcaggt
     7381 aatccagacc gtagttaaat tcatgattgc cgagtgtacc gaccgtataa tccagcgtat
     7441 tcagcgcctt ataaaccgga tgaacatcac ctgcttttaa tcctttcgcc gacatgtaat
     7501 cggccagcgg actcccctga atcaaatcgc cgttatcgac cagtacgctg tttttcactt
     7561 cattgcgggc atcgttaatc aggcttgccg tacgtaccag tccgaatttt tccgtggcgg
     7621 tgtctttgta ataatcgaaa tccatcatgt tgctatgcag atcagtggtt tccatgatac
     7681 gcagatcgac cgtcgctgca ttcacactgg cggcaatcag cgtggccagg agcgttgcgc
     7741 taaacttaat catcagggac atccttttat catcgggaat acgaaagaaa agggagaata
     7801 aacgtcttac ttatagaaca gtgaagaatg ccacaatttt acgctttgaa aatgatgaca
     7861 ctatcacagt tggcgcattc attaacgata gggtataagt aaaacaataa gttaacaccg
     7921 ctcacagaga cgaggtggag aaatgttaga tcaagtatgc cagcttgcac ggaatgcagg
     7981 cgatgccatt atgcaggtct acgacgggac gaaaccgatg gacgtcgtca gcaaagcgga
     8041 caattctccg gtaacggcag cggatattgc cgcacacacc gttatcatgg acggtttacg
     8101 tacgctgaca ccggatattc cggtcctttc tgaagaagat cctcccggtt gggaagtccg
     8161 tcagcactgg cagcgttact ggctggtaga cccgctggat ggtactaaag agtttattaa
     8221 acgcaatggc gaattcaccg ttaacattgc gctcattgac catggcaaac cgattttagg
     8281 tgtggtgtat gcgccggtaa tgaacgtaat gtacagcgcg gcagaaggca aggcctggaa
     8341 agaagagtgc ggtgtgcgca agcagattca ggtccgcgat gcgcgcccgc cgctggtggt
     8401 tatcagccgt tcccatgcag atgcggagct gaaagagtat ctgcaacagc ttggcgaaca
     8461 tcagaccacg tccatcggct cttcgctgaa attctgcctg gtggcggaag gacaggcgca
     8521 gctgtacccg cgcttcggac caacgaatat ttgggacacc gccgctggac atgctgtggc
     8581 cgcagctgcc ggagcgcacg ttcacgactg gcagggtaaa ccgctggatt acactccgcg
     8641 cgagtcgttc ctgaatcctg ggttcagagt gtctatttac taaattcaga tggcagaaac
     8701 agtgtatttc ctgattctgc catcctgatt tctcccaacc taaaaagtta taaataaaaa
     8761 gagattgtat ttaaagtgca aaaattcaat tgctaataag ttacatttta ataatgagcg
     8821 ttttttgata gtttacttct ataatgagat atttaatggc gacataaaat aaccaaataa
     8881 aataaggtag ccatatgtta cccaggatca gacacaataa ttttattggt gcggtggagt
     8941 tattcgtaaa atcatcgcat acaaaaacac attcaaacaa tttttttaat aatattcagc
     9001 atgcatttaa gaaaaaagat tgggtttcga attatgatag cctgttaact ttgtgggagt
     9061 tttttcgttg cgcaactcag attgataaag atagttatca agtgctttca tcaaaaaatg
     9121 aaactgttaa agccatggat aagtttctta tcagtttcag ccttaaagat aacggtgccg
     9181 aatatacaat gacattgcga ggcagtggat ttgaatacga agaaatcccc ataacaataa
     9241 atgagtataa ctcattcatg gatttcaaaa accgtgaatt tccgttagaa caaaacagaa
     9301 gattgtatgc ttgggatatt ctgcagaaaa aacagtctga cataccgaaa aggattaaag
     9361 gttatattca ccaggcgatt ggtgacgtgt ctttaggtta tgccttattg gaggatatag
     9421 taagcaaatt aaaacggggt aaatttgaac tccaaatacc aggaggtgga attaaagaat
     9481 gcgatggatg gtatatttac gaaaaaataa ttgatgataa ttttgccata gtcatagaat
     9541 ctttgggctt tgcgcttaaa atctatggag gggatgaacg ttttcgtaat ggttcctctg
     9601 ttgttttgga ggatgaagat tactctctta tttataattt tctggttaat gcaggtt
//
LOCUS       DAJVUP010000164         9654 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.164, whole genome shotgun sequence.
ACCESSION   DAJVUP010000164 DAJVUP010000000
VERSION     DAJVUP010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9654
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.164"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..1093)
                     /gene="fdeC"
                     /locus_tag="OQQ75_003543"
                     /pseudo
     CDS             complement(1..1093)
                     /gene="fdeC"
                     /locus_tag="OQQ75_003543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308363.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="intimin-like adhesin FdeC"
     gene            2209..2310
                     /locus_tag="OQQ75_003544"
     CDS             2209..2310
                     /locus_tag="OQQ75_003544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977738.1"
                     /translation="MKENKVQQISHKLINIVVFVAIVEYAYLFLHFY"
     gene            2674..2937
                     /locus_tag="OQQ75_003545"
     CDS             2674..2937
                     /locus_tag="OQQ75_003545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HCS1977739.1"
                     /translation="MKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPY
                     VTIDVSSKSHPFYTGKLRTVASEGNVARFTQRFGRFVSTKKGS"
     gene            2937..3077
                     /gene="ykgO"
                     /locus_tag="OQQ75_003546"
     CDS             2937..3077
                     /gene="ykgO"
                     /locus_tag="OQQ75_003546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HCS1977740.1"
                     /translation="MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKK
                     KR"
     gene            complement(3112..3339)
                     /locus_tag="OQQ75_003547"
                     /pseudo
     CDS             complement(3112..3339)
                     /locus_tag="OQQ75_003547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414829.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4162..4704
                     /gene="ecpR"
                     /locus_tag="OQQ75_003548"
                     /gene_synonym="matA"
     CDS             4162..4704
                     /gene="ecpR"
                     /locus_tag="OQQ75_003548"
                     /gene_synonym="matA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECP biosynthesis operon DNA-binding
                     transcriptional regulator EcpR"
                     /protein_id="HCS1977741.1"
                     /translation="MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD
                     FVFINLNTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG
                     LSRDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV
                     YTHRRNAEAKLYSKIYKLVQ"
     gene            4730..5365
                     /gene="ecpA"
                     /locus_tag="OQQ75_003549"
                     /gene_synonym="matB"
     CDS             4730..5365
                     /gene="ecpA"
                     /locus_tag="OQQ75_003549"
                     /gene_synonym="matB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="common pilus major fimbrillin subunit EcpA"
                     /protein_id="HCS1977742.1"
                     /translation="MTHWDITSSIQLGKKCNEKKVLAIALVTVFTGMGVAQAADVTAQ
                     AVATWSATAKKDTTSNLVVTSLGSLAFQYAEGIKGFNSQKGLFDVAIEGDSTATAFKL
                     TSRLITNTLTQLDTSGSTLNVGVDYNGAAVEKTGDTVMIDTANGVLGGNLSPLANGYN
                     ASNRTTAQDGFTFTIISGTTNGTTAVTDYSTLPEGIWSGDVSVQFDATWTS"
     gene            5423..6091
                     /gene="ecpB"
                     /locus_tag="OQQ75_003550"
                     /gene_synonym="yagY"
     CDS             5423..6091
                     /gene="ecpB"
                     /locus_tag="OQQ75_003550"
                     /gene_synonym="yagY"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone EcpB"
                     /protein_id="HCS1977743.1"
                     /translation="MKKHLLPLALLFSGISPAQALDVGDISSFMNSDSSTLSKTIKNS
                     TDSGRLINIRLERLSSPLDDGQVISMDKPDELLLTPASLLLPAQASEVIRFFYKGPAD
                     EKERYYRIVWFDQALSDAQRDNANRSAVATASARIGTILVVAPRQANYHFQYANGSLT
                     NTGNATLRILAYGPCLKAANGKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKF
                     IPVK"
     gene            6117..8640
                     /gene="ecpC"
                     /locus_tag="OQQ75_003551"
                     /gene_synonym="yagX"
                     /pseudo
     CDS             6117..8640
                     /gene="ecpC"
                     /locus_tag="OQQ75_003551"
                     /gene_synonym="yagX"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414825.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher EcpC"
     gene            8630..>9654
                     /gene="ecpD"
                     /locus_tag="OQQ75_003552"
     CDS             8630..>9654
                     /gene="ecpD"
                     /locus_tag="OQQ75_003552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial adhesin EcpD"
                     /protein_id="HCS1977744.1"
                     /translation="MRVNLLITMIIFALIWPVTALRAAVSKTTWADAPAREFVFVENN
                     SDDNFFVTPGGALDPRLTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDM
                     WLENSPVSSPLTGLRCINWYAGCNMTTSLILPQTTDASGFYGATVTSGGAKWMHGMLS
                     DAFYQYMQQMPVGSSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANL
                     RLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSLSGLSCKMVNYTLQTNGLSNTSI
                     HIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSADSIYVFFSSNF
                     FKQMVNLG"
BASE COUNT         2625 a         2370 c         2257 g         2402 t
ORIGIN      
        1 caatacggat cacttcagat ttgcggtact caagaacgat gttgttatta cgctcaacca
       61 ggtcatagcg gctgcctgcc agcattcgac gctcgcgaat gctgtctgta tcgagttgtt
      121 tctccagagg ttcgccaatc cgataattaa cttccaggcc aaagcgagtg tcattctccc
      181 cactcttgcc ctgcttatgc ccggcactca gggtcagaag aggcacaggc gtgtaattca
      241 cttcagcgga aatcgcatgt ggatctttct ggcgtttatc tttgccaaac agcccaactt
      301 catcgccata atactgctca tacatcaggc ttgcgccaag ctgcggtcag gcgggtaaat
      361 agccctcagc acgaatatcc cagccattcg ccgggcgttc ctgataatcc tcaatatccg
      421 gcgatttttt ccagccagaa gcccgaatat aaccattggc gctcagtttc agataatcgc
      481 gccagtattc cgcaccaaca ccaatgcggg tatgactacg ggataaatca tggtcgataa
      541 aggtgttcac cccccccatt cagtcatttc ctgaaaaatg acgccagcca aaaccaatat
      601 ttgactgagt acgatcgtct gtacgatgta ttgccccctg agtgaacaac atatttgtcg
      661 gcgtatcata aatcggataa agcatttcca gcgaagaatc cttcagcgag aaatctttat
      721 cgacattcag tttgacgcgc gctgtaccat atttcccgag ccactcctgt atttcctggt
      781 tagctttagc ggtggccatt ccggtaataa aattacgtgt cgcatcgcta tctggctgac
      841 tgcttaaaaa tgtcccggca tttgcggcaa acgacgcgac atttttctcc acgttattat
      901 cagcagttac cgtagtattt cccatgctca accgtggctg aaccgcatgc tgcgcacgtg
      961 ccgccattac tggggtaaag gtgacagcga gtggaaaaag aacctgaaca gagatatttg
     1021 cccacgccac gcagcgggcc agaactgaat aacgaaatcg tggttgttta tgacctgttt
     1081 tataacgtga cattgagata atttcctgat gaacgaatta acgaacatag gcagacacaa
     1141 ataatggcgt ctgcttgtca gaaaaaccgg ggatttcccg gtttcctttt ccgcagaaaa
     1201 ggaaatacct ttatgtaaga aagtgcaccg ccacctgata tatccagtgt ctgtagccac
     1261 tcatcaggtg gttgggcgcg ggattatatt tttatttatg ggtaaaaatt tagctttttg
     1321 tgcaagtcat taaatagata cctaagttat atttcttact ctgcggacag tgaataattc
     1381 attattcaga ctgaataata atgacctgcc tttaattagc aactattgga aatacgtcga
     1441 agtaggtata tacgccagga taaaccgata tatttattat ggatattcat tttccttcat
     1501 cggactgtaa attgcgggga tatcgaactt acactactca tcgcaacact caaacagatt
     1561 tatgaatttc gttcataacc cctgacaaat cctgccgtct aatcgagctt ttccctttac
     1621 gttatgcttc tcatgaacga gaacacaact tattcatgaa ttaaccattc cggataaact
     1681 atggaatcaa attcaggcat cgaaaggaac tggctggttt ccgttaatag attaaatatc
     1741 tattactctc ccgagagtaa aactatcaaa tcaatgagta accgatacag cctcacaaat
     1801 tctttcagat aattaacccg tcactgcggc acgttctctc gtaaggcgtg cctgcagtgt
     1861 aatccagtat gtatccggca tagttgacgg tttaatagaa ctcaattcct ctccctggtc
     1921 accaacaacg atatcttgta taacacccca ggagatacga cattatgatg agatgcgata
     1981 tgctcctcag caccaatcaa cgccaggact gggccagtct tgagatcaga ctcattcccg
     2041 ggactgactt cagtcgacat atatcaatga cgttggtgca ataaaagata gccgatgtaa
     2101 tacatctatt caaatttgtg atacatgtca aaaaactggt tgaccaaact cgttatttat
     2161 ataagggcac ttacgaagtg cgctcttttt taaagcgagg aagtaccaat gaaagagaat
     2221 aaagtacaac aaatcagtca taaactaatt aatatcgttg tttttgtcgc aattgtagaa
     2281 tacgcctatt tatttctcca tttctattaa taacggcaat aaactgttca cttcagtgat
     2341 atttaaaata tgcattctct ccctttttgt aagtaattat tatatccgtg ggagaggaat
     2401 acacgctgtc aggtaatcaa tcatactgcg ataaatcatc ggccagtaaa gtggagataa
     2461 cctccattgt cgaaaaatcc atactctcag cgaaaccatc atcaatcact catccaggcg
     2521 tttatgggag cgtcgccaac ggctgttaac aatgccagac ttccccgttg cggaaattcc
     2581 acataccact aatggtcaca gggattgggt gttgaaatga tccggatgag catgtatctt
     2641 tatggttatg ctataacata acaggtaaaa atgatgaagc ccaatatcca tcctgagtat
     2701 cgtactgtgg tgttccacga caccagtgtt gatgagtact ttaaaatcgg ctcgactatc
     2761 aaaacagacc gtgagattga gctggatggc gtaacgtatc cgtacgtgac aattgatgtc
     2821 tcttctaaat cgcacccgtt ctatacaggg aagctgagaa cagtggcatc agaaggaaat
     2881 gttgcacgat tcacccaacg ttttggtcgt tttgttagca cgaaaaaggg gtcgtgatga
     2941 aagttcttaa ctctctgcgt accgcaaaag aacgccatcc agactgtcag attgtgaagc
     3001 gaaaaggacg gctatatgtg atttgtaaat ctaatccacg ttttaaggcc gttcaggggc
     3061 gtaagaaaaa acgttgattc aaaattcgac ggattaacga tatttgtctg attaataatc
     3121 agatcggatt aatgttggtg tgtttataac accaacatta attttcctgg ggatatattc
     3181 ttcctgttca tttgaggcca actgcctgac gtttctctac gaatattcca ttatcttaat
     3241 gttgacttgt tgaccagctt cgcccctgta tgctggcatc aactctcttt tagactgaac
     3301 acgccactca gtctcctccc tttgcggcgc agcctgcatt ttcactcaaa ctgttaagat
     3361 gataaatgtg gtaaatctgt tggtactaac ataaaaacgt ttacgccaca ggaacagtct
     3421 gatccaccgg taaccccgtc gccgacgttc gagtgccagt tagagtaacg cgcacagata
     3481 actgcactca gtgccctgac aaagaggcca tcgttcctgt gacagctggc agccttcgtt
     3541 taacttcact taatctggct cttgagggct taccgaacag atgacgtaca tacgcccgtt
     3601 caattttcca tcacttattg taatgaacac ctataaccat tttgtgcggc atgttaatcc
     3661 attaaaattt cttactgatt ggcaaatcat cttcaatgac agctcattat agttttatat
     3721 tctatccctt acccttaaaa cttgtttttt tactagtcca tcacacagcg cattaagact
     3781 attcctaaca cttcagggca aagttcctga ccaatataaa atgcaagtaa gaattgaacg
     3841 ttatattgcc aataacctta tgaaaccaaa tgtctttttc ttcttatcaa aaaagcaata
     3901 ttttcagttt ttctaaatat tgacttaacc attgaattcc ttttccgttc acatattgac
     3961 actcatcgaa aaaaaaacat aaatttaagc ccaatcgaaa ataattaaac ttaatctcgt
     4021 ttaaccttta ttgatatgta ctacgtatct tatttacttc cggtttacta aggaaactga
     4081 atgcacctgt aaaaattaca ggtttggaaa gtagtgacat ggcaaagtga ttacagtagg
     4141 gactatgagg ttaaaaacca tatggaatgt caaaaccgtt ctgataaata catctggtct
     4201 ccccatgacg cctacttcta taaaggacta tctgaactga ttgtggatat cgacagatta
     4261 atttatctgt cgttggagaa aattagaaaa gatttcgtgt ttatcaatct caatacggat
     4321 tctttatctg aatttataaa ccgtgataat gaatggttat ccgcggtaaa ggggaaacag
     4381 gtcgtattga ttgcggccag aaagtcagaa gccttagcta attattggta ctacaacagc
     4441 aatattaggg gcgtggtata cgctggactg agtcgtgata ttagaaaaga actggcctat
     4501 gtgattaatg gcaggttcct gagaaaagat attaagaaag ataaaatcac ggaccgggaa
     4561 atggaaatta tccgcatgac ggcccaggga atgcaaccta aatcgattgc cagaattgaa
     4621 aattgtagtg tgaagacagt gtatacccat cggcgtaatg ctgaggccaa gctgtactca
     4681 aaaatatata agttggttca gtaaactcca ggcaagttag ttttaaaaaa tgactcactg
     4741 ggacatcacg tcctcaattc aactcgggaa gaaatgcaat gaaaaaaagg ttctggcaat
     4801 agctctggta acggtgttta ccggcatggg tgtggcgcag gctgctgacg taacagctca
     4861 ggctgtagcg acctggtcgg caacagccaa aaaagacacc accagtaatc tggttgtgac
     4921 gtcactcggt agcttggcgt tccagtatgc cgaaggcatt aaaggtttta actcacagaa
     4981 aggtctattt gacgtggcta tcgagggtga ctcaacggct accgccttta aactgacctc
     5041 acgtcttatc accaacacat taactcagtt ggatacctca ggttccacac tgaatgtggg
     5101 cgtggattat aacggcgcgg cagtcgaaaa aactggcgat accgtgatga tcgataccgc
     5161 caacggcgta ctgggcggca accttagccc gctggctaac ggttacaatg ccagcaatcg
     5221 taccaccgca caggatggtt tcaccttcac catcatcagc ggcaccacca atggtaccac
     5281 cgcagtaacc gattacagca ctctaccgga aggcatctgg agcggcgacg ttagcgtaca
     5341 gttcgacgcg acctggacca gttaatctct ctgatgtacc agcaggggta gcccccctgc
     5401 tttattcctg gacggaattg ttatgaaaaa gcaccttctg cctctcgctc tgctgttttc
     5461 cggaatatct ccggcccagg cgctggatgt cggcgatata tcatcgttta tgaacagtga
     5521 cagcagcacg ctgagcaaaa cgatcaaaaa cagtaccgac agtggtcgcc ttatcaatat
     5581 ccgtctcgaa cggctctctt caccgcttga cgacgggcag gttatctcaa tggacaagcc
     5641 ggatgagttg ctactcactc ccgccagctt gctgctaccc gcccaagcca gcgaagtgat
     5701 ccgcttcttc tataagggac ccgcagatga aaaagagcgc tactaccgca ttgtctggtt
     5761 tgatcaggcc ctcagtgatg cgcagcgcga taatgccaac cgcagcgctg tggccactgc
     5821 ttccgcccgc atcggcacca ttctggtcgt cgcccctcgt caggcgaact accactttca
     5881 gtacgccaac ggctccctga caaatacagg aaatgcgacg ctgcggatcc tcgcctacgg
     5941 cccctgcctg aaagccgcca acggtaagga gtgtaaagag aattactacc tgatgccggg
     6001 caagtcgcgt cgttttaccc gcgtggacac tgcggataac aaaggacggg ttgcactttg
     6061 gcagggtgat aagttcattc ccgtgaaata gatagctgtg cagatggata acgacaatgc
     6121 ctttacgacg gttctcccca ggactgaaag cccagtttgc cttcggcatg gtctttttgt
     6181 tcgttcagcc cgatgccagc gctgctgaca taagtgcgca gcaaataggt ggggtgatta
     6241 ttccgcaggc cttcagtcag gcgcttcagg acggcatgag cgtcccgctc tatattcatc
     6301 tcgccggtag tcagggtcgc caggacgatc agcgaatcgg cagcgctttt atctggctgg
     6361 atgatggaca gctacgcatc cggaaaatac agctggaaga gagtgaagat aacgccagtg
     6421 tcagcgaaca aactcgacag cagctgatgg ctctggcgaa cgccccgttc aatgaggccc
     6481 ttaccatccc ctgactgaca acgcgcagtt ggatctcagc ttgcgccaac tgctgctgca
     6541 gctggtggtc aagcgcgaag cgctgggcac cgtactacgc tcacgtagcg aagacatcgg
     6601 gcagtccagt gttaacaccc tcagcagtaa tctgagctat aacttgggcg tctataacaa
     6661 ccagttgcgt aacggcggga gcaacacatc cagctatctg tcgctgaata acgttactgc
     6721 gctgcgcgaa catcatgtgg tgctcgacgg ctcgctgtac gggatcggta gcggtcaaca
     6781 ggacagtgaa ttatataaag cgatgtatga acgcgatttt gccggtcacc gatttgccgg
     6841 tggaatgctc gacacctgga acttgcagtc attagggccg atgaccgcca tttcagcagg
     6901 gaagatttac ggcctttcct ggggaaacca ggccagctcc accatcttcg acagcagcca
     6961 gtcagccacg ccagtgatcg cctttttacc ggcggcgggc gaagtacatc tcacccgtga
     7021 tgggcggcta ctaagcgttc agaacttcac tatgggcaat catgaagtgg atacccgggg
     7081 tctaccgtac ggtatttacg atgtggaagt tgaggtgatc gttaacggtc gcgtgatcag
     7141 caaacgcact caacgggtca ataagctgtt tagccggggc gcggcgtcgg tgcaccactg
     7201 gcgtggcagg tatggggcgg tagctttcat atggatcgct ggtcggaaaa cgggaaaaag
     7261 acgcgaccag ctaaagagag ttggctagca ggtgcctcga cctccggctc attgagtacg
     7321 cttagctggg cggcaacggg atatggatac gataatcagg cggtgggtga aacccgtctg
     7381 acgctgccgc ttgggggggc gatcaacgtt aacctgcaaa atatgctggc cagtgacagc
     7441 tcatggagca gcatcggcag catcagcgct actctaccgg gaggctttag ttcgctgtgg
     7501 gttaaccagg aaaaaacccg tattggcaat caattgcgac gtagcgatgc cgacaaccgt
     7561 gcaatcggcg gcacactcaa cctgaactca ctgtggtcga agctgggcac attcagcatc
     7621 agctacaatg atgaccgccg ttacaacagc cattattaca cggcagatta ctatcaaaat
     7681 gtctacagcg gtacctttgg ttcgcttggc ctgcgggccg gtattcagcg ctataacaac
     7741 ggcgacagca acgccaatac agggaaatat atcgctctcg atctctcgct accactgggc
     7801 aactggttta gcgcagggat gacccatcaa aacggctaca ccatggcaaa cctgtcagca
     7861 cgcaaacagt ttgatgaagg gaccattcgc actgttggtg ccaatctgtc acgtgccatc
     7921 tccggcgata ccggtgatga caaaaccctc agcggtgggg cgtatgcaca gttcgacgct
     7981 cgttacgcca gcggaacgct gaacgtcaat agcgcggcgg acggctacgt caataccaac
     8041 ttgaccgcca atggcagcgt cggctggcag ggtaaaaaca ttgctgccag cgggcggact
     8101 gatggcaacg ctggggtgat attcaacacc gggctggagg acgacggtca gatcagcgcc
     8161 aaaatcaacg ggcggatttt cccgcttaac ggcaagcgta actatctccc gctctctccc
     8221 tatggaagat atgaggtgga gttacagaac agcaaaaact cactcgacag ttacgatatc
     8281 gtcagcggcc gcaaaagtcg tctgactctc tatccaggca atgtcgctgt cattgagcca
     8341 gaggtgaagc agatggttac cgtctccggt cgtatccgtg cggaagacgg cacactgctg
     8401 gctaacgcac ggattaacaa ccatatcggc cgaacccgaa ccgatgaaaa cggcgagttt
     8461 gtcatggacg tggataagaa ataccccact atcgattttc gctacagtgg caataaaacc
     8521 tgcgaagtgg ctctggaact caaccaggcg cgcggtgccg tctgggtcgg tgatgtggtc
     8581 tgcagcggcc tctcatcgtg ggcggcggtg acgcagacag gagaagagaa tgagagttaa
     8641 cctactaata acgatgataa ttttcgcgct aatctggcca gtaactgcgc tcagagcggc
     8701 agtgagcaaa acaacctggg cggatgcacc ggcacgcgag tttgtgtttg tcgaaaacaa
     8761 ctcagacgac aactttttcg tcactcctgg cggggcgctg gatccgcgcc tgaccggtgc
     8821 caaccgctgg accggtttaa aatacactgg ttcaggaacc atctatcagc aaagcctcgg
     8881 ctacattgat aacggttaca acaccggcct ttataccaac tggaagtttg atatgtggct
     8941 ggaaaattcg ccggtttcat ctcctttaac tggcttacgc tgcatcaact ggtacgcagg
     9001 gtgtaatatg accaccagtc ttatcctgcc gcaaaccacc gacgccagtg gattttatgg
     9061 cgcgacggtg accagcggcg gcgcgaagtg gatgcacggc atgttgtcag acgcgtttta
     9121 ccagtatatg caacaaatgc ccgtcggcag cagctttaca atgaccatca atgcctgtca
     9181 gacctctgtg aactatgacg ccagcagcgg cgcgcgttgt aaggatcagg cctccggcaa
     9241 ctggtatgtt cgcaatgtca cccatacgaa agcagcaaat cttcggttaa taaataccca
     9301 ctcgctggcg gaggtattta tcaacagcga cggggtgccg accctgggcg aagggaacgc
     9361 cgactgccgg acacagacca tcggcagcct ttcaggatta agttgtaaga tggtcaacta
     9421 taccctgcaa acaaacggac tcagcaacac ctcaatccat atattcccgg cgatcgccaa
     9481 ctcgtcgtta gcctcggccg tcggggcgta cgatatgcag ttcagtctga atggcagttc
     9541 atggaaaccg gtgagcaata ccgcctatta ctacaccttc aacgagatga agagcgcaga
     9601 ctcgatctat gttttcttct cgagcaactt ctttaagcag atggtgaacc tcgg
//
LOCUS       DAJVUP010000165         9394 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.165, whole genome shotgun sequence.
ACCESSION   DAJVUP010000165 DAJVUP010000000
VERSION     DAJVUP010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9394
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.165"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1005
                     /locus_tag="OQQ75_003553"
     CDS             <1..1005
                     /locus_tag="OQQ75_003553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312656.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3748 domain-containing protein"
                     /protein_id="HCS1977745.1"
                     /translation="PKSEKYVFIHGPENPDETWYYDFHHRRGVIAEGGKVSNLDAMDI
                     TAPYTPGALRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQ
                     KQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKV
                     PELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPR
                     HWVRCNPQGTQIAFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWL
                     GFVLDNRIACAHAQSGEVEYLTESHANPPSADAVVFSPDGQWLAWMEGGQLWITETDR
                     "
     gene            complement(1007..1339)
                     /locus_tag="OQQ75_003554"
     CDS             complement(1007..1339)
                     /locus_tag="OQQ75_003554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418143.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1977746.1"
                     /translation="MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATM
                     IGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSHVEKSEANAQATNAVI
                     PPARMPDN"
     misc_feature    1579..1651
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01832"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ROSE (Repression Of Heat Shock gene Expression)
                     occurs in the 5'-region of heat shock genes and acts as an
                     RNA thermometer to modulate expression; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF01832"
     gene            1645..2058
                     /gene="ibpA"
                     /locus_tag="OQQ75_003555"
     CDS             1645..2058
                     /gene="ibpA"
                     /locus_tag="OQQ75_003555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpA"
                     /protein_id="HCS1977747.1"
                     /translation="MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDE
                     NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA
                     ENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN"
     gene            2170..2598
                     /gene="ibpB"
                     /locus_tag="OQQ75_003556"
     CDS             2170..2598
                     /gene="ibpB"
                     /locus_tag="OQQ75_003556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709512.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpB"
                     /protein_id="HCS1977748.1"
                     /translation="MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNH
                     YRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAEN
                     MEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS"
     gene            2794..4455
                     /locus_tag="OQQ75_003557"
     CDS             2794..4455
                     /locus_tag="OQQ75_003557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HCS1977749.1"
                     /translation="MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVG
                     HFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI
                     IGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY
                     AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHD
                     LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQ
                     EVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGD
                     ISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVP
                     GFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKS
                     GGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPP
                     ALAFANNLHPTSGAPALSYATVYPLVMFLRIITPQLLAVLFWSIG"
     gene            complement(4452..5168)
                     /locus_tag="OQQ75_003558"
     CDS             complement(4452..5168)
                     /locus_tag="OQQ75_003558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1977750.1"
                     /translation="MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRK
                     AIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMP
                     APPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
                     IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMF
                     RNASEYQVEYHLRRLHPEKS"
     gene            5463..7079
                     /locus_tag="OQQ75_003559"
     CDS             5463..7079
                     /locus_tag="OQQ75_003559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312650.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HCS1977751.1"
                     /translation="MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTD
                     PNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFI
                     NAMGMIWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK
                     KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGGWV
                     YTFLERILIPTGLHHFIYGQFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGG
                     FALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFI
                     SPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLIDQVLPQNWIPMFSNHADMMLTQIAI
                     GLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQA
                     AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVII
                     GLHVSQLREQLDSLINSHQSAENVAITEAV"
     gene            7079..8402
                     /locus_tag="OQQ75_003560"
                     /pseudo
     CDS             7079..8402
                     /locus_tag="OQQ75_003560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312649.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
     gene            complement(8533..8964)
                     /gene="tnpA"
                     /locus_tag="OQQ75_003561"
                     /pseudo
     CDS             complement(8533..8964)
                     /gene="tnpA"
                     /locus_tag="OQQ75_003561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313209.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            8972..>9394
                     /locus_tag="OQQ75_003562"
     CDS             8972..>9394
                     /locus_tag="OQQ75_003562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1977752.1"
                     /translation="MKRLQAFKFQLRPGGQQEREMRRFAGACRFVFNRALARQNENHE
                     AGNKYIPYGKMASWLVEWKNATETQWLKDAPSQPLQQSLKDLERAYKNFFQNRAAFPR
                     FKKRGQNDVFRYPQGVKLDQENSRIFLPKLGWMRYRNSR"
BASE COUNT         2195 a         2346 c         2471 g         2382 t
ORIGIN      
        1 ccgaagtcag agaaatatgt tttcatccat ggcccggaaa atcctgatga aacatggtat
       61 tacgatttcc atcatcgacg cggagtcatt gctgaaggcg gcaaggtgag caatctcgat
      121 gcaatggata ttaccgcgcc gtatacgcca ggagcgctgc gcggcggcag ccatgtgcat
      181 gtctttagcc cgaacggtga aagggtgagc tttacctata acgaccatgt aatgcatgaa
      241 ctcgatccgg cgctggattt gcgaaacgtc ggtgttgctg cgccgtttgg cccggtcaac
      301 gtacaaaagc agcatccgcg tgaatacagc ggtagccact ggtgcgtgct ggtgagtaaa
      361 accacgccca cgccgcagcc tggcagcgat gaaatcaatc gtgcttatga agaaggatgg
      421 gtaggaaatc acgcgctggc gtttattggc gacacacttt cgccaaaggg cgagaaagtg
      481 ccggagctgt ttatcgttga gttaccgcaa gatgaagctg gctggaaagc ggcaggtgat
      541 gcgccgttaa gtggaacgga aaccaccctg cccgcgccac cgcgcggcgt cgtgcagcga
      601 cgtttaacct ttacccacca tcgggcttat ccggggttag tcaacgtccc gcgccactgg
      661 gtgcgctgta atccgcaggg tacgcaaatc gcgtttttaa tgcgtgatga taacggcatt
      721 gtgcaactgt ggcttatctc gccacagggc ggcgagccgc gccagttaac ccataacaaa
      781 acggatattc agtctgcatt taactggcat ccgtcaggag aatggttggg ctttgtgctg
      841 gataatcgaa ttgcttgtgc ccatgcgcaa agtggcgagg ttgagtattt aaccgaaagc
      901 cacgccaatc caccttctgc ggacgccgtg gtcttctcgc cggatggtca atggctggcg
      961 tggatggaag gcggccagct gtggatcacc gaaactgatc gctaaatcag ttatcaggca
     1021 ttctggccgg tggaataacc gcattggtgg cttgcgcgtt ggcttcgctt ttttcaacgt
     1081 gtgagcgcac cgagctgtct ttgcggaaca catcccacgg cagtaaaagc gtgtccatca
     1141 cagcggtaaa cggcatatcg agaatcgcca gcgacttagt gccccagttg gtttcatcgt
     1201 cgccaatcat ggttgcgctg gcgcgggtgc cgggatacgt tccttctttc cctccggtat
     1261 gggacatcac gctggagcat cctccgagta atgtcattcc gctgcatatc atgaacgcta
     1321 acaacacatt tcttatcata ataaattcat ctgttgatcg tgggtgttgg cctgatgagt
     1381 tatagcgatc ccttgctgaa aataacatca tcattacgtc gcactgtggc ggctatcgca
     1441 ctttaacgtt tcgtgctgcc ccctcagtct atgcaataga ccataaactg caaaaaaaag
     1501 tccgctgata aggcttgaaa agttcatttc cagacccatt tttacatcgt agccgatgag
     1561 gacgcgcctg atgggtgttc tggctacctg acctgtccat tgtggaaggt attacattct
     1621 cgctgatttc aggagctatt gattatgcgt aactttgatt tatccccgct ttaccgttct
     1681 gctattggat ttgaccgttt gtttaaccac ttagaaaaca accagagcca gagtaatggc
     1741 ggctaccctc cgtataacgt tgaactggta gacgaaaacc attaccgcat tgctatcgct
     1801 gtggctggtt ttgctgagag cgaactggaa attaccgccc aggataatct gctggtggtg
     1861 aaaggtgctc acgccgacga acaaaaagag cgcacctatc tgtaccaggg catcgctgaa
     1921 cgcaactttg aacgcaaatt ccagttagct gagaacattc atgttcgtgg ggctaacctg
     1981 gtaaatggtt tgctgtatat cgatctcgaa cgcgtgattc cggaagcgaa aaaaccgcgc
     2041 cgtatcgaaa tcaactaatt ccctaaggcc gcctgacgcg gcctgacatc tccatgctcg
     2101 ccgtcaggga gcatatgcga atcttcggat ttgcaggtac ttactcgctt cttagaagga
     2161 gaaatgacta tgcgtaactt cgatttatcc ccactgatgc gtcaatggat cggttttgac
     2221 aaactggcca acgcactgca aaacgccggt gaaagccaga gcttcccgcc gtacaacatt
     2281 gagaaaagcg acgataacca ctaccgcatt acccttgcgc tggcaggttt ccgtcaggaa
     2341 gatttagaga ttcaactgga aggtacgcgc ctgagcgtaa aaggcacgcc ggagcagcca
     2401 aaagaagaga aaaaatggct gcatcaaggg cttatgaatc agccatttag cctgagcttt
     2461 acgctggctg aaaatatgga agtctctggc gcaaccttcg taaacggttt actgcatatt
     2521 gatttaattc gtaatgagcc tgaacccatc gcagcgcagc gtatcgctat cagcgaacgt
     2581 cccgcgttaa atagctaact agctattctc tttgccccgc cattctggtg gggctttttt
     2641 tgtctttctt cttcaacaat gcgttaaatt tcgactgttt aagatatttc ggcacgttct
     2701 ttcccgtgat aatgtgcgct ataaggcaaa tctgcttcac cgattcagcc ataatccgta
     2761 gcaattaaaa tgttatctca agagaaatgg acgatgagtg atatagcatt aacggtcagt
     2821 attctggctt tggtggcagt cgtcggtttg tttatcggca acgtcaaatt tcgcggcata
     2881 ggattaggta ttggcggcgt gctgtttggt gggatcatcg tcggccattt tgtttctcag
     2941 gcggggatga cattaagtag cgatatgctg catgttattc aggaatttgg cctgatcctg
     3001 ttcgtttata ccatcgggat tcaagtaggg ccgggcttct ttgcctcatt gcgcgtctcc
     3061 ggattacgcc tcaacctgtt tgctgttctg atcgtcatca tcggtggtct ggttaccgcc
     3121 atcctgcata aactgtttga tattccactg ccggtagtgc tggggatttt ctccggtgcg
     3181 gttaccaata cgccagcgct gggggcaggg cagcagatct tgcgcgacct gggtacacca
     3241 atggaaatgg tcgatcagat ggggatgagt tacgcgatgg cgtatccatt cggcatttgc
     3301 gggattttgt tcaccatgtg gatgttgcgg gttattttcc gcgtcaatgt cgagacagaa
     3361 gctcagcagc acgagtcttc acgcaccaat ggcggcgcgc tgatcaagac tatcaatatt
     3421 cgcgttgaga accctaacct gcatgattta gctattaaag atgtaccgat tctcaacggc
     3481 gacaaaatta tctgctcgcg tctgaaacgc gaagaaaccc taaaagttcc ttcgccagat
     3541 accattatcc aactgggcga tttgctgcat ctggtggggc agccagcgga tttacataat
     3601 gcgcaactgg tgattggtca ggaggtcgat acttcgctgt ccacgaaagg cactgatttg
     3661 cgcgtcgagc gtgtggtggt caccaatgaa aacgtgctcg gaaaacgtat tcgcgacctg
     3721 cactttaaag aacgctatga cgttgttatc tcgcgcctga accgtgccgg ggtcgaactg
     3781 gtcgccagtg gcgatatcag cctgcagttc ggcgatatcc tcaatctggt ggggcgtccg
     3841 tccgcaattg atgccgttgc caatgtgctg gggaatgcgc agcaaaaact gcaacaggtt
     3901 cagatgctgc cagtgtttat tggcatcggg cttggcgtat tgttaggttc tattcccgtc
     3961 tttgtgcctg ggttcccggc cgcgttgaaa ctggggctgg cgggcggtcc gctgattatg
     4021 gcgttgatcc tcgggcgtat cggcagtatc ggcaagctgt actggtttat gccgccaagt
     4081 gccaacctcg cgctgcggga gctggggatc gtgctgttcc tctcggtcgt tggtctgaaa
     4141 tctggtgggg attttgtgaa taccctggtc aatggcgaag ggctaagctg gattggttat
     4201 ggtgccctga tcaccgccgt tccgctgatt actgttggca ttctggcgcg gatgttagcc
     4261 aaaatgaatt acctgaccat gtgcgggatg ctggcaggtt ccatgaccga tcctccggcg
     4321 ctggcgtttg ctaataatct tcatccaacc agtggtgcgc cggcgctctc ttacgccact
     4381 gtctatccgt tagtgatgtt tctgcgaatt atcacccccc aattactggc ggtgctcttc
     4441 tggagtatcg gttaactctt ttccgggtgg agtcgccgta aatggtactc cacctggtat
     4501 tcgctggcat ttctgaacat cactgaataa ttcaaaaact ccccgctctc gctatatgac
     4561 aacgaggtga tccgcagcag tggcgtgtgt tccgctacct tcatttgccg cgccagcagt
     4621 ctatcggcga gcaccggcgt caggctttca taattaccgc caatcaaaat cccacactct
     4681 tgttcaatat attcaaactt cgacccttcc agatgttgca gcgaaagatt acggaacagt
     4741 ttaaccggca tatagctgtc ttccagcatc agcggtttcc cttccacaaa acgaacgcga
     4801 cgggagaagt agatctgctc gttgatttga atccgtaact ggctggcaat ggccggaggc
     4861 gcaggcatga tttcaaaaat cagcacctgg ctggtgaccg tttttccctg ccgttttaac
     4921 acctccacca gtccggtcag gctggcggtt tgatgcagca catctttgcg caccaggtaa
     4981 gtgccgctgc cgtggcggcg gaccaccagc ccccacgcta ccagcaggtc aatcgcttta
     5041 cggatggtca tccgggatac tgcaaattct tccgccaact ttttttcacc gggaagaagg
     5101 ctgtttagcg tgaaatccgc ggaattaagt cgaattctta accgctccgc aatgcttttg
     5161 tagatcatct ctagatctct tttttgcctg caagcccggg taatgcgccc acaagttctg
     5221 cttaatcgat tgaaaaaaca tcttttttta aagatgtgtt cgatgctgtg taccagtgct
     5281 cacagatgtc tactttttcg cgaaaacgta gatctctacc gcccaacgaa aagcatgaaa
     5341 gcgatcacga atcccattgg gtcgtcatgt tctgccgatc gcatcttcct atcctcgctc
     5401 caggcctgcc gcataaccaa tcaggcttcc tacttacaga attgagaaaa gaggatgtgg
     5461 aaatgctcag tcaaattcaa cgctttggcg gcgcgatgtt cacgccagtg ctgctgtttc
     5521 ccttcgccgg gattgtggtg ggtcttgcca tcttgctgca aaacccgatg tttgtcgggg
     5581 aatcactgac cgatccgaac agtttattcg cgcaaatcgt acacattatt gaagagggcg
     5641 gttggacggt attccgtaat atgccgctga tttttgctgt cggtttaccc attggccttg
     5701 ctaagcaagc gcaggggcgt gcttgtctgg cggtgatggt gagtttcctg acctggaact
     5761 atttcatcaa cgcgatggga atgatctggg gaagctactt cggcgtcgat ttcactcagg
     5821 acgcggtggc aggtagcggt ctgacaatga tggccgggat taaaaccctc gataccagca
     5881 ttatcggcgc aattatcatt tccggcattg tgacggcgct gcataaccgt ctgttcgata
     5941 aaaaactgcc ggtttttctc ggcattttcc aggggacgtc ttatgtggtg attatcgcct
     6001 tcctggtgat gatcccctgt gcctggctga cgttgctcgg ttggccaaaa gtacaaatgg
     6061 ggattgaatc tctgcaagcg ttcctgcgtt cggcgggtgc gcttgggggg tgggtttaca
     6121 ccttcctcga acgtattctg atcccaaccg gtttacacca cttcatctac ggacagttta
     6181 tctttggtcc ggcagctgtt gaaggcggca ttcagatgta ctgggcgcag catctgcaag
     6241 agttcagtct gagcgccgag ccgctgaaat cgttgttccc ggaaggcggt tttgccctgc
     6301 acggtaactc aaaaatcttt ggtgccgtgg gcatttcttt agcgatgtac ttcactgccg
     6361 caccggaaaa tcgggtaaaa gtggcgggct tgctgattcc cgcaacctta accgccatgc
     6421 tggtgggaat taccgaaccg ctggaattta ccttcctgtt catttcaccg ttgctgtttg
     6481 cggtacacgc cgtgctggcg gcctcaatgt cgaccgtgat gtatctcttt ggtgtggtgg
     6541 gcaacatggg cggaggtctg attgaccagg ttttaccgca aaactggatc ccgatgttca
     6601 gcaaccacgc ggatatgatg ctgacccaaa tcgccattgg gttgtgcttt accctgctgt
     6661 acttcgtggt tttccgcaca ctgattctgc aattcaacat gtgcacgccg ggacgtgaag
     6721 atgcggaagt gaaactctac tcaaaagccg aatacaaagc ctcgcgaggc caaaccaccg
     6781 ctgcagagcc aaaaaaagag ctggatcagg ctgccggtat cctgcaagcc ctgggcgggg
     6841 tcggcaatat ctccagcatt aacaattgcg cgacgcgttt acgtattgca ctgcatgaca
     6901 tgtcacaaac gctggatgac gaagtcttta aaaagctggg agcgcacggc gtcttccgta
     6961 gtggcgatgc cattcaggtg atcattggtc tgcatgtatc ccagctgcgt gaacagctcg
     7021 atagcttaat taattctcat caatcagcag aaaatgttgc cattacggag gcagtataat
     7081 gaccaaattc tcagtggttg tcgcaggcgg tggaagcacc tttacgccag gcatcgtgtt
     7141 gatgctcctg gcgaatcagg accgtttccc gcttcgtgca ctgaaatttt atgataacga
     7201 tggtgcgcgg caggaagtga ttgccgaagc ctgtaaagtc atccttaaag agaaagcgcc
     7261 ggacattgcg tttagttaca ccaccgatcc tgaagtggca ttcagcgacg ttgattttgt
     7321 catggcgcac atccgcgtcg gcaaataccc gatgcgcgaa ctggatgaaa aaatcccgct
     7381 gcgccacggc gttgttggtc aggaaacttg cggacccggc ggaatagcgt acggcatgcg
     7441 ttccattggc ggcgtcctgg aactggtgga ttatatggaa aaatattcac caaatgcctg
     7501 gatgctcaac tactccaacc cggcagcaat tgtcgcagaa gccacgcgtc gtctgcgccc
     7561 gaatgcgaaa atcctcaaca tctgtgacat gccaatcggt attgaaagcc ggatggcgca
     7621 aattgttggg ctgcaagatc gcaaacagat gcgcgtgcgc tactacggcc tgaaccactt
     7681 tggctggtgg acatcaattg aagatttgca gggcaacgac ctgatgcccc agctgcggca
     7741 atatgtctct aagcacggtt atgttccacc gcagcaagat acacatactg aagcgagctg
     7801 gaacgacacc tatgcaaaag cgcgggatgt ccaggcactg gacccggata cattgccgaa
     7861 cacctatctg aaatattatc tcttcccgga ttatgttgtt cagcattcca accctgaaca
     7921 tacccgcgcg aatgaggtga atggaacatc gcgagaaaca ggttttcgat gcttgccgcg
     7981 ccattacagc ggcaggaaat tcagcggcgg ccaagctgga gattgacgaa catgcgtcat
     8041 acatcgtcga tctggcggcg gcaattgcct tcaacactca ggagcggatg ttgctgattg
     8101 tgcctaacaa cggggcaatc cataactttg atgatgaagc gatggtcgag atcccgtgtc
     8161 tggtcgggca caacggacca gaaccactgg tggtcggcga tatcccgcag tttcagaaag
     8221 ggttaatgag tcagcaagtg gcggtggaaa aactggtcgt ggacgcctgg gaacagcgtt
     8281 catatcagca cctgtggcag gcgattacgt tatcgaaaac ggtaccgagc gcctcggtcg
     8341 ccaaagctat tctggatgag ttgctggagg ccaacaaagc gtactggcca gagttacgtt
     8401 aattgtgtgg actggcatcc gttgggtgct ggtccgtatt ctttagcacg gctgacggcg
     8461 cataaccaaa tttatccggt gcgccgtaaa accccgtcct tcagggcggg gatataaggc
     8521 gcggttttcc acctaaccag gtgtttgctg ttgttcaatg tattggcgga tgacggatat
     8581 tggcgcacct ccgcagctat tggcaaaata gccaggactc cacaaaacgc ctttgtagta
     8641 atacctgact gcaatatctg gtcgatctcg tcgcagtaac ctacccgata cgcctttgag
     8701 gctgtttacc agactggata tcgccagttt gggaggatag ttaattaaca aatggacgtg
     8761 atctggttcg ccatccattt aaaccagttc agcttcaaaa tcagcacata catttgaaaa
     8821 gtaagtgcgt agtttttctg tcgcgtcata gtcaaaaatc tgacgtcggt atttggtgac
     8881 aaagaccagg tgaacatgca tcaggaaaac acaatgcctt ccacgccgga tatcggtttc
     8941 ttttttcaca gaccaaagta tcatttggcc tgtgaaacga ctacaagcat ttaaattcca
     9001 gttaagaccc ggtggtcaac aggagcgtga aatgaggcgc ttcgcaggcg catgtcgttt
     9061 cgttttcaat cgtgctctgg cacgtcagaa tgagaatcat gaggccggta ataaatacat
     9121 cccttacggg aaaatggctt cctggctggt tgagtggaaa aatgccactg aaacgcaatg
     9181 gcttaaagat gccccgtcac agccattgca acagtcactg aaagaccttg agcgggctta
     9241 caaaaacttc ttccagaatc gggctgcttt tccccgattc aaaaagcggg gacagaatga
     9301 tgtattccgc tacccgcagg gcgttaagct cgatcaggaa aacagccgta tttttctgcc
     9361 gaaactgggc tggatgcgct accggaacag ccgt
//
LOCUS       DAJVUP010000166         9341 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.166, whole genome shotgun sequence.
ACCESSION   DAJVUP010000166 DAJVUP010000000
VERSION     DAJVUP010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9341
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.166"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..191
                     /locus_tag="OQQ75_003563"
     CDS             <1..191
                     /locus_tag="OQQ75_003563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977753.1"
                     /translation="AHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALRFNP
                     LATLPSGDKVAAAVGITP"
     gene            complement(296..832)
                     /gene="rcdA"
                     /locus_tag="OQQ75_003564"
     CDS             complement(296..832)
                     /gene="rcdA"
                     /locus_tag="OQQ75_003564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RcdA"
                     /protein_id="HCS1977754.1"
                     /translation="MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGS
                     MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAQGACQAITDMIYSSQVATPDN
                     MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD
                     RKPLSREEILRMVERVAG"
     gene            916..2124
                     /locus_tag="OQQ75_003565"
     CDS             916..2124
                     /locus_tag="OQQ75_003565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1977755.1"
                     /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV
                     SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS
                     PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA
                     LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGIPFYRDIQLL
                     LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID
                     RYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP
                     DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD
                     TKTQTAMENS"
     gene            2124..2939
                     /gene="ybjI"
                     /locus_tag="OQQ75_003566"
     CDS             2124..2939
                     /gene="ybjI"
                     /locus_tag="OQQ75_003566"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase"
                     /protein_id="HCS1977756.1"
                     /translation="MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVAS
                     GNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFTTVVEHLLTRPEV
                     EIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQ
                     VQKALHEAIGDIMVPVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGN
                     DIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ"
     gene            3025..3309
                     /locus_tag="OQQ75_003567"
     CDS             3025..3309
                     /locus_tag="OQQ75_003567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977757.1"
                     /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV
                     PQAVSVATVPQTVYVAPAPAPAYRPHPYARHLASVGEGMVIEHQIDDHHH"
     gene            complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="OQQ75_003568"
                     /pseudo
     CDS             complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="OQQ75_003568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdfA"
     gene            4865..5461
                     /gene="ybjG"
                     /locus_tag="OQQ75_003569"
     CDS             4865..5461
                     /gene="ybjG"
                     /locus_tag="OQQ75_003569"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1977758.1"
                     /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAAV
                     LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP
                     SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG
                     CLSAQIIWQAMGHKLYQRLQSWYRFCFALPIRKGWVRD"
     gene            5519..6277
                     /gene="deoR"
                     /locus_tag="OQQ75_003570"
     CDS             5519..6277
                     /gene="deoR"
                     /locus_tag="OQQ75_003570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor DeoR"
                     /protein_id="HCS1977759.1"
                     /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN
                     HSAPVVLLGGYIVLEPHSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT
                     TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT
                     LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA
                     RMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKLMY"
     gene            complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="OQQ75_003571"
                     /pseudo
     CDS             complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="OQQ75_003571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308946.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
     gene            7762..8387
                     /gene="gstB"
                     /locus_tag="OQQ75_003572"
                     /pseudo
     CDS             7762..8387
                     /gene="gstB"
                     /locus_tag="OQQ75_003572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308945.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase GstB"
     gene            complement(8384..>9341)
                     /gene="yliI"
                     /locus_tag="OQQ75_003573"
     CDS             complement(8384..>9341)
                     /gene="yliI"
                     /locus_tag="OQQ75_003573"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldose sugar dehydrogenase YliI"
                     /protein_id="HCS1977760.1"
                     /translation="RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS
                     RRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD
                     GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGI
                     RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG
                     EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT
                     EDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN"
BASE COUNT         2245 a         2427 c         2297 g         2372 t
ORIGIN      
        1 cggcgcactt catgatgtcg ggtggaaaca ttctggcctt acaaaaaatt ctcggacacc
       61 acgatataaa aatgactatg cgttacgcac atctggcacc ggatcatctg gaaacggcgc
      121 tccgtttcaa tcctctggca acgctgccaa gtggcgacaa agtggcggca gcggttggca
      181 ttaccccgta ataaccacca ctgaccacca acctaactta ttgtttttaa tctaacttat
      241 tgttttcatt aacccgttta cataaatggg ttttttgtta tctaaaattt atctactacc
      301 ctgcaaccct ctcaaccatc ctcaaaatct cctcgcgcga tagcggctta cggtcggtga
      361 caaaatgcag cgtcatcccc tcaataaacg catcaagcgc gcgggcggtt ccgggttcaa
      421 accattgttc gagcgtttgc tgactgcgct gcatccagtt ttgcattacc gtttttaata
      481 gcggttttcg gctagccagc gcgtagagct ggtacatcag ctccatatta tccggcgttg
      541 caacctgtga gctgtagatc atatcggtga tagcctggca tgcgccttga gcatcactaa
      601 catcgctaaa aaatgcctga tattgccggg acataatctc agtaaaactg ctgaacgcct
      661 ccagcaacaa ctcatcaatt cctgaaaaat agtaggtcat cgatcccaac ggtaccccgg
      721 caagggtagc aattttgcgg tgcgtaacag catgtattcc gtaaagtttc accgcctcca
      781 gcgtggcctg gataattttt tctcgccgtt gcggatcgtt agcgcgacgc atgtcatttc
      841 ctctgtctgc aattgtgtac aaatgtacac aaccttgcta atgttgtctt ccctcttctt
      901 attttgacgt gatctatgac cgtaaattct tcacgtaatg cattgaaacg ccgaacctgg
      961 gcgctgttta tgttcttctt tttgccaggc ctgttaatgg cgtcctgggc aacccgtacg
     1021 cctgctatcc gcgatattct ctctgtctcg atcgctgaaa tgggcggtgt tctctttggt
     1081 ctgtcgatcg gttcgatgag cggtattctc tgctcggcgt ggttagtgaa acgctttggg
     1141 acacgtaatg tcatcctggt cacgatgtcc tgcgcattga tcgggatgat gatattaagt
     1201 ctggcactct ggctgacatc gcccctgctc tttgccgttg gtctcggcgt ctttggggca
     1261 agttttggtt ctgcggaagt ggcgataaac gttgaaggtg ccgccgttga gcgagaaatg
     1321 aataaaacgg ttttgccgat gatgcacggt ttttatagcc tgggcacgct ggcaggcgct
     1381 ggtgtcggga tggcactgac ggcctttggc gttccggcaa cggtgcacat tttattggcg
     1441 gcgctggtag gtatcgcgcc tatttatatc gccattcagg caatccctga cggtacgggc
     1501 aaaaatgctg ccgatggcac ccagcatggc gaaaaaggca ttccttttta tcgcgatatc
     1561 cagttgctgt tgattggtgt tgtagtgctg gcgatggcct ttgccgaagg ttctgccaac
     1621 gactggttac ccttattaat ggttgacggt cacggtttta gccctacttc cggctcgctg
     1681 atttatgccg gttttaccct ggggatgacc gttggacgct tcactggcgg ttggttcatc
     1741 gaccgttaca gtcgcgttgc cgtggttcgg gccagtgcac taatgggggc gttgggtatt
     1801 gggctgatta tttttgtcga tagcgcctgg gtcgctgggg tgtctgttgt actctgggga
     1861 ctgggtgcct cgctgggctt cccgctgacc atttctgccg ccagcgatac cggccccgat
     1921 gcaccaaccc gcgtcagtgt ggtagcaacg accggttatc tggctttcct cgtcgggccg
     1981 ccgctgctgg gctatctcgg cgaacattat ggattacgta gtgcaatgct ggttgtactg
     2041 gcgctggtta ttctcgcggc tattgtcgcg aaagccgtcg ccaaacccga taccaaaacg
     2101 cagacggcga tggagaatag ttgatgagca ttaaattaat tgcggtagac atggatggta
     2161 ctttcttaag cgatcaaaaa acctataacc gtgagcggtt tatggctcag tatcagcaaa
     2221 tgaaagcaca aggcattcgc tttgtggtcg ccagcgggaa tcaatattat cagttgatct
     2281 ctttcttccc tgaaattgct aatgaaattg cctttgtggc tgaaaacggc ggctgggtag
     2341 tgagtgaagg caaagatgtt tttaatggcg agctgtcgaa ggatgccttt actactgtcg
     2401 tggaacattt gctgacgcgc ccggaagtgg aaattattgc ctgcggaaaa aatagcgcct
     2461 atacgctcaa aaaatatgac gatgccatga aaacggtggc ggaaatgtat tatcaccgtc
     2521 tggaatacgt tgataacttt gacaacttag aagatatttt ctttaagttt ggcctgaatc
     2581 tttccgatga actgattcca caagtacaaa aagcattaca tgaggccatc ggcgatatta
     2641 tggtgccagt ccacaccggc aacggcagca tcgatctgat tatccccggc gtacataaag
     2701 ccaatggcct tcgccaactg cagaaattat ggggaataga cgacagcgaa gtggtggtct
     2761 ttggcgatgg cggtaacgat attgagatgc tgcgtcaggc aggctttagt tttgcaatgg
     2821 aaaatgccgg cagcgcggtc gtcgcagcgg caaaataccg ggcaggctcc aataaccgtg
     2881 aaggcgtact ggatgtgatc gataaagtgc ttaaacacga agcgccattt gaccaataaa
     2941 aacggcagca cgcccggcaa cacaatacct gaatgaaggc tgcataattc gcggaaatta
     3001 acccgctgca ttatttcagg cgaaatgatt atgaaaaatt gtctactgtt gggcgcgctt
     3061 ttaatgggct ttactggtgt ggcgatggcg caaagtgtca ccgtcgatgt gccgagtgga
     3121 tacaaagtgg ttgtagttcc tgattcagtc agcgttccac aagcggtcag cgtcgcgact
     3181 gtgccgcaaa ccgtctatgt ggctcctgcg ccagctccgg cttaccgccc gcatccttat
     3241 gctcgccatc ttgccagcgt aggtgaaggg atggttatcg aacaccagat tgacgaccat
     3301 caccattaat tcgagaatgc ctgatcgcac aaagcagtca ggcatttttt tacccttcgt
     3361 gagaatttcc catctgttta tcttttaaaa agataaccat cagcgacagc cacaaaattc
     3421 cgttgacaag gttgaagaga ttaaactgtc cgttgccccc gttcagccag gcatgtttgc
     3481 tgatttcaat accaacggta aagatcagca tttgcagcat tcccatcgcc gcagaaaccg
     3541 tacctttact catatcgctg gcaaacaggg ttaatcgcac cagtcccgca ttcgccagac
     3601 caataccgaa agcataaata cttaacccgg cagtcatcca taaatacgcg tgcgatgaga
     3661 taaccgttgc cgcagcagcg accaacagac caatcataat cggccagccg cccataatta
     3721 tcagcgaacg tacggtgcgg cgcgaggtca gacgcgctaa cagcaagtta cccgcaatta
     3781 acgccccgaa aataggcact tgcagcaagc catattcata gctgctcaac tgctcgccgg
     3841 taatgatgat aatcggcgac tgggcgatcc acgccagcaa tggcaggcta acgaatccca
     3901 gcgccagcgc ccccgccaca aagcggccgt tcttcagcac cagcttatag tcacgaccga
     3961 gttctttcag tgacagtttc tcgcctatac gcgtggcggt ttcaggcata gctcgttgca
     4021 gaccgaaaaa ggagatcgct gccaatgcgg caaacaaaac aaacatcccc tcccagggca
     4081 gcacatggat ccacgccgcg cccaccagcg gaccaagtag cggagcaatc agcgccacgt
     4141 tcgccatcag cgcggtgatc ttgatacaaa ccgcctcttc gaaagattcc tgaattgcgg
     4201 cgtatcccac agcgccaatg aaacagaggc ttatgccctg caagaagcgc aacagagtga
     4261 attgttcaat gttttgcgcc agtaatattg ccagacaggt gatgataaac cacaccaccc
     4321 ccgccagcat caccggacgg cgaccaatac gatccgacag cggccccagg agccattgta
     4381 aaaacatccc gcccgccaga tatgcggtca ttgaagtagg aacccaatca atgcccgcct
     4441 gatattgttc caccacggcc aacataccgg gttgaatcat atctgccgat ataggttgaa
     4501 aattcgtaaa gcaccagaca gagagggaaa agtaacgcct gacgtccaag cctggcaccg
     4561 gaagctaatt tattttgcat gcaatttctt cgccaataat aatcgcgcag agtttaataa
     4621 aagcgcagct aacgagaaag cgaattttgt agctgaaacc acggttaagc acattcttac
     4681 attattgcga gtatagctac gctttcttta agttttattt aacctatgcc cgttacaatc
     4741 acccaccgta aacaggccgc ttgagggaaa taagacgatg ccgctttacc cagtttaacc
     4801 tgcactttat tctcaacgac ttgcctgtat tggctccctt ttaatcactt tgcgtcggga
     4861 agttatgctg gaaaatttga atctctctct attctctctt attaacgcga cgccagactc
     4921 ggctccgtgg atgatctcgt tggcgatttt tattgctaaa gatttgatta ccgtggtgcc
     4981 gctgctggcc gcggtgcttt ggttgtgggg gcttacagca caacggcaac tggtgataaa
     5041 aatcgctatc gcgctggcgg tcagcctgtt tgtgtcctgg acgatgggac atctttttcc
     5101 gcacgaccga ccctttgtcg aaaatatcgg ctataacttc ctgcatcatg cggcggatga
     5161 ctcattccca agcgaccacg gtacggtgat tttcaccttt gcactggcat ttttatgctg
     5221 gcatcgcctg tggtccggct cacttttaat ggtgctggcc gtcgtcattg cctggtcgcg
     5281 cgtttatctt ggcgtccact ggccgctgga tatgctcggt ggattgctgg caggtatgat
     5341 tggctgcctt agtgcccaga ttatctggca agcgatgggg cataaactct atcaacgtct
     5401 gcaatcgtgg tatcgcttct gttttgcatt accgatccgc aaaggctggg tgcgtgactg
     5461 atctctgcta aaaagtgtag tattgagcgg ctcgcttcaa taactattca gagggattat
     5521 ggaaacacgt cgcgaagagc gtatcgggca gctgctgcaa gaattaaaac gcagcgataa
     5581 gttacatctt aaagacgccg ccgccctgct tggggtttcg gagatgacga ttcgtcgcga
     5641 tctgaacaac cacagtgcgc ccgtcgtttt gctcggcggc tatattgttc tggaaccgca
     5701 tagtgccagc cattacctgt taagcgatca aaaatcccgc ctggtggaag aaaaacgccg
     5761 ggcggcaaaa ctggctgcga cactggtaga acccgatcag accctctttt ttgactgtgg
     5821 caccaccacg ccgtggatta ttgaagcgat tgataatgaa atccctttta ccgccgtttg
     5881 ttattcgcta aatacctttc tggcgctgaa agagaaaccc cattgccgcg catttctgtg
     5941 cggtggtgaa tttcacgcca gcaacgccat tttcaaaccc atcgattttc agcaaacgtt
     6001 gaataatttt tgcccggata tcgcttttta ttccgcggcg ggcgtgcatg tcagtaaagg
     6061 cgctacctgt tttaatcttg aagagttgcc ggtaaaacac tgggccatgt cgatggcgca
     6121 aaagcatgtg ctggttgtcg accacagtaa atttggcaag gtccgtccgg cgcgcatggg
     6181 tgacctgaaa cgctttgata ttgtggtgag tgattgttgc ccggaagatg agtatgtgaa
     6241 gtacgcgcag acgcaccgta ttaagttgat gtattaatga cgtataaccg gatgacgttt
     6301 cgcgccatcc ggttatcaga agattaagag aaccagctgc cgaaccactg atggaatttc
     6361 atcatcacga aatcccacat cctaccaaag aatccgccct cttccacatt ttccatcacg
     6421 atcagcggac gctgctcaat ggatttaccg ttaagctgga aatcaatggt cccgacaacc
     6481 tgaccttttt tcagcggtgc ggtaagctgc ggttccgtta acgtgtagct cgccttcagg
     6541 tttttcagct gcccacgcgg tatggtcact gagcccgctt cgcctgcccc gagattcact
     6601 tcgctcttat caccaaacca gacgcgctga gtcacaaagg tggcatcagg tttaattggc
     6661 gtcacggttt caaagaagcg gaaaccccag gtcaataatt tctcagactc atcggtcagt
     6721 tttcgccccc aacactacgg agattaaacg catatcgccc tgggtagccg aagcaaccag
     6781 attatatccc gcgcctgccg tggttcctgt cttcatgcca tcaacattca gattgctgct
     6841 ccacagcaga cggttacggt taggctgacg aattttgttg aaggtgaact ctttctcttt
     6901 atgaatggcg tactcttccg gcacatcgtg gatcaatgct ttacccagca atgccatatc
     6961 gcgcgcggta ctgaactgcc ccggcgcatc caggccgtgc accgtctgga aggtagtgtt
     7021 ggtcagaccc agttttttgg cataaccatt catcagacca ataaatgact cctggctccc
     7081 ggcaacgtaa tcggccagcg caatacaggc gtcattaccg gactggataa tcacatcttt
     7141 gttcaagtct gccaccgaaa cctgatcgcc cggtttgagg aacattaccg atgaaccacg
     7201 cagtgccgga tttcccgtcg cccaggcatc tttaccgacc gtcaccatat cggtgagttt
     7261 aatcttatcg gccttaagcg cctgcccaac cacatagctg gtcatgattt tagtcaggct
     7321 cgcgggatcc agtttctcat ccgcattgcc ttctgccagc actttaccgc tggcgtaatc
     7381 cattaaaatc catgcacgcg catccacgct cggcgcttca acggtttgtt cggccgcgaa
     7441 tgccgttggg gcaaaaagga ataaaaatgc agaacccgct gcaagaccac gaaggagaga
     7501 ggagtattgc gtcataaatg ccacccgagt atccattcaa aaaaaatacg ttatatcgcc
     7561 gtatgataag ttcggtgatt aataacgcac acacaaactt aaagaaaccg taagttggta
     7621 aagtttttaa agtttatgca atatcctgcc gcttcgctgc ttctggtgtc atttttttgc
     7681 cagctgttgc ttaaaagtta actttacttc accatcggag tcctgttcag cctgtggctg
     7741 cctgtcggaa aaggggtgag tatgattacg ctgtggggtc ggaataattc aaccaacgta
     7801 aaaaagtatt gctgacgctc gaagaactgg aactacctta tgagcaaatt ctcgcgggcc
     7861 gtgagtttgg gataaatcac gatgctgatt ttctggcgat gaaccctaac gggctggtgc
     7921 cgttgttgcg tgacgacgaa agtgatctca ttctttggga atcaaacgcc attgtccgct
     7981 atctggcggc acagtacggg caaaaacgcc tgtggatcga ctcaccggca cgtcgtgcgg
     8041 aagcggaaaa atggatggac tgggcaaacc agacgctcag taatgcccat cgagggatcc
     8101 tgatgggatt agtcagaaca ccaccggaag agcgcgatca ggccgccatt gatgccagtt
     8161 gcaaagagtg cgacgccctg tttgccctgc tcgatgcgga actggcaaaa gtaaaatggt
     8221 tctctggcga cgagtttggt gtgggcgata tcgctatcgc accgttcatc tacaatttgt
     8281 ttaacgttgg cctgacctgg acaccgcgtc caaatctgca acgctggtat cagcaactca
     8341 ctgaacgccc cgcagtgcgc aaagtggtga tgattcccgt tagctaattg cgtgggctaa
     8401 ctttaagtaa ttccccactg gactcgtcgg tgagaacgta taaataaccg tcgggtccag
     8461 tgcgaacatc acgaattcgc tgccctctgt ccgttaaaat acggccatct tctgtcactt
     8521 tgtcgccgtt gacgctcatc acaatgacat ctttatcttt cagcgcgcca ataaataatt
     8581 tttgctgcca ctgggggaat ttatcgctgt tatagaaggc catgccgctc acagcgggcg
     8641 aatctttcca gtaaaaaaca ggttgctcgg tcccggcgac gatctcccct ttcgcttccg
     8701 gtatcttaaa gcctgaatag ttgattcccc aggttgccag cggccagccg tagtttttgc
     8761 ctttttgcgg gatattaatt tcatcaccac cgcgcgggcc atgttcattc agccacagtg
     8821 cattactcca cggattcatc gccattcctt gcggattacg aatgccataa gaccagatct
     8881 cggcgcgcgc accggattcc tttataaaag gattatcatc cgggatttcg ccctgatcgg
     8941 tcagacgcac cagtttgccc tgtaatttat ccagatcctg cgccgtcggg cgctgattgt
     9001 tttcgcccag agcaataaaa agataacctt taccgtcgaa taccagccgc ccgccaaaat
     9061 ggttgccggt agacagtttt ggcatctggc ggaagacggt gcggaagtcg gtcacttttg
     9121 agagatcatc acttaagcgg ccataaccca cagcagttcc ggctttgcca tcatcgccaa
     9181 cttcggaata acttaaccag atgcggcgag actgagcaaa atcaggcgct aaaaccacgt
     9241 ccagcaggcc gccctgcccg tgcgcccaaa cgtccggaac tccggaaagc ggcgcagata
     9301 atccttttcc tgcttgccag tgacgcaact cgccgccgcg c
//
LOCUS       DAJVUP010000167         9089 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.167, whole genome shotgun sequence.
ACCESSION   DAJVUP010000167 DAJVUP010000000
VERSION     DAJVUP010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9089
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.167"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            52..936
                     /locus_tag="OQQ75_003574"
     CDS             52..936
                     /locus_tag="OQQ75_003574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707334.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HCS1977761.1"
                     /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG
                     AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP
                     WTLKSHHEDADGVALTFELTQSEETKKFCPHDFTLLAHFRVGKTCEIDLESHGEFETT
                     SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKEDVLTDGIQTFPDRTDRVYLNPQDCS
                     VINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQK
                     VTKEKPAHLAQSIRVAKR"
     gene            complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="OQQ75_003575"
     CDS             complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="OQQ75_003575"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal reductase YeaE"
                     /protein_id="HCS1977762.1"
                     /translation="MQQKMIQFSGDVSLPAIGQGTWYMGEDASQRKTEVAALRAGIEL
                     GLTLIDTAEMYADGGAEKVVGEALTGLRDNVFLVSKVYPWNAGRQKAINACEASLRRL
                     NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQ
                     CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHA
                     HNISSAQVLLARVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELTMLDKAYPAPK
                     GKTALDMV"
     gene            complement(1931..2677)
                     /gene="mipA"
                     /locus_tag="OQQ75_003576"
     CDS             complement(1931..2677)
                     /gene="mipA"
                     /locus_tag="OQQ75_003576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="scaffolding protein MipA"
                     /protein_id="HCS1977763.1"
                     /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT
                     DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL
                     DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGI
                     GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR
                     YTRLSDEVTDSPMVDKSWTGLISTGITYKF"
     gene            3113..5047
                     /gene="yeaG"
                     /locus_tag="OQQ75_003577"
     CDS             3113..5047
                     /gene="yeaG"
                     /locus_tag="OQQ75_003577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YeaG"
                     /protein_id="HCS1977764.1"
                     /translation="MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLM
                     AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK
                     KQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQI
                     LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDEN
                     NQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLL
                     TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR
                     ISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGES
                     LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVL
                     EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT
                     YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN
                     NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG
                     YTRKQVRLLCEWYLRVRKSS"
     gene            5160..6443
                     /locus_tag="OQQ75_003578"
     CDS             5160..6443
                     /locus_tag="OQQ75_003578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HCS1977765.1"
                     /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAMNKRSVT
                     DVDSGESISIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQ
                     GQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGV
                     PANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAE
                     LRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILL
                     YLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNP
                     AQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHL
                     QSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKD"
     gene            6590..8065
                     /locus_tag="OQQ75_003579"
     CDS             6590..8065
                     /locus_tag="OQQ75_003579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HCS1977766.1"
                     /translation="MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLF
                     MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNA
                     VIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVS
                     IFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYN
                     ADYSLYVVDYCPDNHTATRGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLA
                     SLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLT
                     NIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQ
                     QSIRPDDILARLEGEVFGLLFTELNSAQAKIIADRIRKNVELLTGFSNRYDVPEQMTI
                     SIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI"
     gene            8159..8245
                     /locus_tag="OQQ75_003580"
                     /pseudo
     CDS             8159..8245
                     /locus_tag="OQQ75_003580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            8246..>9089
                     /locus_tag="OQQ75_003581"
     CDS             8246..>9089
                     /locus_tag="OQQ75_003581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1977767.1"
                     /translation="MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQ
                     KADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHK
                     YPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDL
                     NDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQN
                     VMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGREVAK
                     FSVPL"
BASE COUNT         2392 a         2181 c         2108 g         2408 t
ORIGIN      
        1 cttcggtcgc tctttttttt acctgataaa atgaagttaa aggactgcgt catgattaag
       61 aaaatttttg cccttccggt catcgaacaa atctcccctg tcctctcccg tcgtaaactg
      121 gatgaactgg acctcattgt ggtcgatcat ccccaggtaa aagcctcttt tgcattacag
      181 ggcgcacacc ttctctcgtg gaaacctgcg ggtgaagaag aagttctgtg gttgagcaac
      241 aacacaccgt tcaaaaatgg cgtcgctatt cgcggtggcg taccggtttg ctggccgtgg
      301 tttggtccgg cggcacaaca aggtctgcct gcgcacggtt ttgcccgcaa cctgccgtgg
      361 acgctgaaat cacatcatga agatgctgat ggcgtagcgc tgacttttga attgacgcaa
      421 agcgaagaga cgaaaaaatt ctgtccgcac gactttacgc tgttagcgca tttccgcgtg
      481 ggtaaaacct gtgaaatcga tcttgaatca catggcgaat ttgaaaccac ctctgccctg
      541 catacctact ttaacgtggg tgatatcgct aaggtaagcg tcagtgggct gggcgatcgc
      601 ttcattgata aagtgaatga cgcgaaagaa gatgtactga ccgacggtat tcagaccttc
      661 cctgaccgta ccgatcgcgt gtatctgaat ccgcaagatt gcagcgtgat taatgatgaa
      721 gcgctgaatc gtattatcgc cgtaggccac cagcatcatc tgaacgttgt aggctggaac
      781 ccgggaccgg cgctttcaat tagcatgggc gatatgccgg atgatggcta caaaacattt
      841 gtttgtgtag aaacggctta cgcttcagaa acgcaaaaag tcaccaaaga gaaacctgca
      901 catctggcgc aatccattcg cgttgcgaaa cgttaatttg cgttaatgtt gtgtgccggg
      961 tgcgatgcat ccggcacgta tcaacatcac accatatcca gcgcagtttt tccttttggt
     1021 gccggatacg ctttatccag catggttaat tccgctgacg aaagttcgac ctcaagcaca
     1081 gccgcattct gttgaacatg ggcaatcgtg gccgcttttg gaatcgccat cacaccctga
     1141 tggctgatta ccctcgccaa caatacttgt gccgagctga tattgtgagc atgtgcaatt
     1201 tcgttgacta ccgcgttttt taacagtcca ttgcgcaacc gcccggcctg ggctaatgga
     1261 ctgtaagcca tcaccggcat ctgctgttgc tggcaccagg ggagtagatc gtactcaatc
     1321 cctcgtgaac cgagatggta aagcacctga ttagtggcac actgatttcc ccccggcagc
     1381 tgccagagtt cctgcatatc agcataatca aggttagaaa cgccccagcg gcggattttt
     1441 ccctgggcga tcaatttttc catcgctgca acagtctctt caaaagcgaa actgccagac
     1501 cagtgtaata agtagagatc gagataatca gtattgagac ggcgtaaact ggcttcgcat
     1561 gcatttatcg ctttttgcct gccagcattc cacggataga ctttagagac gagaaagacg
     1621 ttatcacgca gaccggttaa tgcttcccca accacctttt cggcaccgcc atcggcatac
     1681 atttcggcgg tatcaatgag ggttaaaccg agctcaatgc ccgcgcgtag tgcagcaact
     1741 tctgttttgc gctgactggc atcttcgccc atataccatg ttccctgccc tatggctggc
     1801 agtgagacat cgccactaaa ttgaatcatt ttttgttgca ttgtttcctc ccaggtattg
     1861 caccaccgta atgcaaaaca gggcgtgacg ccctgttttt atgcacaaaa tgccctggaa
     1921 agatgcatta tcagaatttg taggtgatcc cggtagaaat caggccagtc caggatttat
     1981 ccaccatcgg gctgtcagta acttcatcag acagacgggt atagcgcgcg gtaccgtaaa
     2041 cactccagtc gccgaggaag ttgtagctgg cgctcagctc caggtaaggg ctccagctgt
     2101 cgttcgggtt atagccacgc agaccgctgc gagcggactc tttgcgcgat acgccataat
     2161 agtattcgtt ctggttttcg ctgttccact gcacaccaat acccggagtc acggtcaggc
     2221 caccgttggt gtaacgatac aaccaggcca tatcccagac aatgccgttg ctgttatcca
     2281 gggtatcgcc agccagggtg gtacgcaggt aaccgtactg ggtaaagtga gcataagaca
     2341 gaccagccat catggtgctc ttacggtcat ccaggtgacg catttggtga tcgccactgt
     2401 ctttcgcttt gaagtaaagc ggcgaccagt aagcggtaat tgaaagttta tccgttgcgt
     2461 cattccacag gtagtaacca ccacctaagc cacggaacca gaagttatcg ccttcatagt
     2521 tgattaccgg tactgggtaa acatcggtat cgtaatcttt atatgggtgc tcaacgacac
     2581 ctacgcctgc gcccaaggaa aatttacctt cagcgtgcgc tacgcctgca gacgttgcga
     2641 taagcactcc aagtgccaga agtttgagtt tggtcacaat taatcattcc ttaaacaaat
     2701 gtttagcggg cgacaaagtt tacccgtcaa tacatcgaaa cccaaccttt ttacgttttc
     2761 attttttaaa gtaactgttt aattttcctg ccgcggatga caccgcgctt acagccaaat
     2821 gaatttagcg ttactggcga gcctggtctt tacattaatt atgcaaaatt tatggatgag
     2881 ttgttgatat gccattgaaa ttaagaaagc cgtgcaggca agttttccat ttgccatcta
     2941 cgcttaattt tgaaggtgta tcaccgggca cgttgttctc atcgtcgata aaatggcatg
     3001 agagttgctg tgttttagca agagacgtcg ttcagtttac ctcttccggg aggctctact
     3061 attcatatga acggctctta acctgtgcta aaaaacgaaa ggacggcata ccatgaatat
     3121 attcgatcac tatcgccagc gatatgaagc tgccaaggac gaagagttca cactgcagga
     3181 gtttcttacc acttgtcggc aagatcgcag tgcttatgcc aacgcggctg agcggctatt
     3241 gatggctatc ggtgagcctg tcatggtcga tacagcccag gaacccagac tttctcgact
     3301 cttttctaac cgggtcattg cacgttatcc ggcgtttgaa gagttttacg gcatggaaga
     3361 cgcgattgaa cagattgtct cttatctgaa acacgcggct caggggctgg aagagaagaa
     3421 acaaatcctg tatctgctgg ggcctgtggg tgggggtaaa tcatcgcttg ctgagcgact
     3481 gaaatcatta atgcagctcg taccgattta tgtattgagc gccaacggtg agcgtagccc
     3541 ggtcaacgat catccgttct gtcttttcaa tccgcaggaa gatgcgcaga ttctggaaaa
     3601 agagtatggc attcctcgcc gttatctcgg caccatcatg tcgccgtggg cggcaaaacg
     3661 cctgcatgaa tttggtggcg atatcactaa gttccgggta gtgaaggtct ggccgtcaat
     3721 tctgcaacaa attgctatcg ccaaaacgga acccggcgat gagaacaacc aggacatctc
     3781 cgcgctggtt gggaaagtcg atattcgtaa actcgaacac tacgcgcaga atgacccgga
     3841 cgcctacggc tattccggtg cgctgtgccg cgccaatcag gggatcatgg aattcgttga
     3901 gatgtttaaa gcaccgataa aagtgctgca tcccttgtta accgccactc aggaaggtaa
     3961 ctacaacggg acggaaggta tctccgccct gccgttcaac gggattattc tcgcccactc
     4021 gaacgagtcc gaatgggtca ctttccgtaa taacaaaaac aacgaagcct tcctcgaccg
     4081 tgtttacatc gtgaaggtgc cgtattgctt gcgcatttcc gaagagatca aaatctacga
     4141 gaaattgctt aatcacagtg aattgactca cgccccatgc gcccctggca cgctggaaac
     4201 actgtcacgt ttttccattc tttcgcgcct gaaagagcca gaaaactcca gcatttattc
     4261 aaagatgcgg gtttatgatg gcgaaagtct gaaagacacc gatcccaaag ccaagtcgta
     4321 tcaggaatat cgtgactacg ccggtgtcga tgaagggatg aacggtctgt cgacgcgttt
     4381 tgcgtttaag atcctctccc gcgtgttcaa cttcgatcat gtagaagtgg cggcaaaccc
     4441 ggtccatctg ttctacgtcc tggaacagca gatcgagcgc gagcagttcc cgcaagagca
     4501 ggcagaacgc tatctggagt tcctgaaagg ttatctgatc ccgaaatatg ccgagtttat
     4561 cggcaaagag atccagacgg cctaccttga atcctattcc gaatatgggc aaaacatttt
     4621 cgaccgttat gttacctacg cggatttctg gattcaggat caggagtatc gcgatccgga
     4681 taccgggcag ctgtttgacc gcgagtctct taacgccgag ctggagaaaa tcgagaaacc
     4741 ggcggggatc agtaatccaa aagatttccg caacgagatt gttaacttcg tactgcgcgc
     4801 cagagcgaat aacagcggac gcaatccgaa ctggaccagc tatgaaaaac tgcgcacggt
     4861 tatcgagaag aaaatgttct ccaataccga ggagctgttg ccggttatct cgtttaacgc
     4921 caaaacgtca accgacgagc agaagaaaca cgacgacttt gtcgaccgta tgatggaaaa
     4981 aggctacacc cgtaaacagg tgcgtttact gtgcgaatgg tatttgcgcg tacgtaaatc
     5041 gtcttaacaa ccctggcccg gtacacatgc taccgggcct acaacgacag cgaaccgtgg
     5101 gccagagaaa tggcaacaca ggcgtagcat acagttggca aatgtagtac ggggggcata
     5161 tgacctggtt tattgaccgg cgtctgaacg gcaaaaacaa aagcatggtg aatcgccagc
     5221 gttttttacg ccgttataaa gcgcaaatta aacagtcgat ctccgaggcc atgaataagc
     5281 gttcggtgac tgacgtcgac agcggcgaat ccatatccat tcccacggaa gatattagcg
     5341 aaccgatgtt tcatcagggg cgtggcggcc tgcgccaccg cgtacatccg ggcaatgacc
     5401 atttcgtcca gaacgaccga attgaacgtc cccagggtgg cggcggaggt tccggcagtg
     5461 gtcagggcca ggccagccag gatggtgaag gtcaggatga atttgtcttt cagatttcga
     5521 aagatgagta tcttgatctg ctctttgaag atttggcctt accgaatctg aaacaaaacc
     5581 aacaacgcca gctgaccgaa tataaaacgc atcgggcggg ttataccgct aacggcgttc
     5641 cagccaatat cagcgttgtg cgttccttgc agaactcact ggcgcgacgc acagccatga
     5701 cggcgggcaa gcgacgggaa cttcatgcgc tggaagagaa tttggccatc atcagcaaca
     5761 gtgaacctgc gcaactgctg gaagaggaac gtctgcgcaa agaaattgca gaattacgtg
     5821 ccaaaattga acgcgtccct tttattgaca ccttcgattt acgttacaag aactacgaga
     5881 agcggcccga tccctccagc caagcagtga tgttttgcct gatggacgtt tccggttcaa
     5941 tggatcaatc cactaaagat atggctaagc gtttttatat tctgctgtat ctgttcctca
     6001 gcagaacgta taagaacgtg gaagtcgtat acatccgcca tcatacccaa gcgaaagaag
     6061 tcgatgaaca tgagtttttc tactcgcagg aaacaggcgg caccattgtt tccagcgccc
     6121 tgaaactgat ggatgaggta gtgaaagagc gttataaccc ggcacagtgg aatatttacg
     6181 ctgcacaagc atcggacggc gataactggg ccgatgactc tccgctttgc catgaaatcc
     6241 tggcgaaaaa attattacct gttgttcgtt attacagcta tatcgaaatt acccgtcgtg
     6301 cacatcagac attgtggcga gaatatgagc atctgcaatc tactttcgac aactttgcga
     6361 tgcagcacat ccgcgaccag gatgatattt atccggtgtt ccgtgaactg tttcataaac
     6421 aaaatgcaac agctaaagac taaaactatc agccaggtca ttatcgcctg gctgattttt
     6481 agcttactgt aaattatctc atttattaca tacattagct tacaatcgct ttaaatatga
     6541 cagcataacc tttacataat ttagttccag aaaacaatca ttcggaaaaa tgattcagtc
     6601 aacacgtatt tccatggggt tattctttaa atatttttta tcgttaacga aaattgatcc
     6661 tggtcaaaac tatatatctc tgccatcaat aaaatccagc actcacattg ctctcctttt
     6721 tatggtttct atgggtacac aaaaattaaa agctcaaagc ttttttattt tcagtttatt
     6781 gctgacatta attttatttt gcattactac cttatataac gaaaacacaa atgtaaaact
     6841 catcccacag atgaattacc tgatggttgt tgtggctttg tttttcctta acgccgtcat
     6901 ttttcttttc atgttaatga aatatttcac taacaaacaa attttaccaa cactcatttt
     6961 aagccttgca ttcttaagtg gccttatcta tttagttgaa accattgtaa ttatccataa
     7021 accaattaac ggcagtacac tgatccagac aaagtcgaat gatgtttcta ttttctatat
     7081 tttccgccaa ctcagtttta tttgtttaac ctcgctggca ctcttttgtt atggaaaaga
     7141 caacatcctt gacaacaata agaaaaaaac gggaatcctg ttgctggcgt tgattccttt
     7201 tttagttttt ccccttctgg cacacaatct gagcagttat aacgctgact attctttgta
     7261 tgtcgtcgac tactgtccgg acaaccatac tgcgaccagg ggaatcaact atacaaaaat
     7321 attggtttgt ctgtgggcat ttttactgtt ctttattatc atgcgtacac gattagccag
     7381 cgaactatgg ccgttaatag cattattatg tctggcatcg ctatgctgca acttacttct
     7441 actgactctg gatgagtata attacaccat ctggtatatc agtcgcggga ttgaagtttc
     7501 cagtaaactg tttgttgtgt cttttctgat ttataacatt tttcaggagc tgcaactctc
     7561 cagcaaactg gcagttcatg atgtgctgac caatatttat aatcggcgct actttttcaa
     7621 cagcgtagag tcattattgt cgcgacctgt tgttaaggac ttctgtgtca tgctggttga
     7681 tattaatcag ttcaaacgca tcaatgccca atggggacat cgtgtgggtg ataaagtgct
     7741 ggtttcaatt gtcgatatta tccagcaaag catccgccct gatgatattt tagcgcgact
     7801 ggagggtgag gtgtttggct tgctatttac cgaactcaat agtgcccagg caaaaatcat
     7861 tgcggatcgt atacgtaaaa atgtcgaact cctgaccggc tttagtaaca gatatgatgt
     7921 tcctgaacaa atgaccatca gtattggcac ggttttttca acgggtgaca cgcgtaatat
     7981 ctcgcttgtc atgacggaag cagataaagc cttacgcgaa gcgaaaagcg aggggggcaa
     8041 caaagtgatt attcatcata tttaagtgca aaaatattca gagccatgct ttttgcgtgg
     8101 cttttgcata caatttatta ctattacccc taaatttccc ctccccagcg gcgcagagat
     8161 gagtataatt agcgcccctg tgccaggccg caatcgaact ttatctggtt ttctcgtttc
     8221 actaactgaa ggagtgccat ttatcatgaa attgcaccat agaatgctcc ggcattttat
     8281 cgccgcaagt gtcattgtgc tgacatcttc cttccttatt tttgaacttg tcgccagcga
     8341 cagagcaatg agtgcctatc tgcgctatat cgtgcagaaa gcagactcct cctttcttta
     8401 tgataagtat cagaatcaga gtattgccgc gcatgtgatg cgcgctctcg ctgctgagca
     8461 gtcggaagtg tcgccagaac agcggcgcgc catctgcgag gcttttgagt ctgccaataa
     8521 tacccatggc ttaaacctga ctgctcataa atacccgggc ttacgcggca cactacaaac
     8581 cgcatccact gactgcgaca caattgtgga agctgcagca ctattacccg cttttgatca
     8641 ggcagtggaa ggcaaccgcc accaggatga ttacggttca ggtcttggga tggccgaaga
     8701 gaaatttcac tattatctcg atctcaatga ccgctatgtc tatttttatg agccggttaa
     8761 tgttgaatac tttgcgatga ataactggtc cttcctgcag tcaggaagta ttggtatcga
     8821 tcgcaaagat attgaaaagg tatttaccgg gcgtaccgta ttgtcgagca tttaccagga
     8881 tcagcgtact aaacagaacg tgatgagttt gctgacgccg gtgtatgttg cagggcagct
     8941 aaaagggatt gtgctgctgg atattaacaa aaacaatttg cggaatatct tttacactca
     9001 tgaccgccct ctcctctggc gttttctcaa tgtcacgcta accgataccg attcggggcg
     9061 tgaagtggcc aaattcagtg tgccacttc
//
LOCUS       DAJVUP010000168         9045 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.168, whole genome shotgun sequence.
ACCESSION   DAJVUP010000168 DAJVUP010000000
VERSION     DAJVUP010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9045
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.168"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            195..1028
                     /gene="ppsR"
                     /locus_tag="OQQ75_003582"
     CDS             195..1028
                     /gene="ppsR"
                     /locus_tag="OQQ75_003582"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="posphoenolpyruvate synthetase regulatory
                     kinase/phosphorylase PpsR"
                     /protein_id="HCS1977768.1"
                     /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE
                     NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ
                     EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR
                     CGKTPTSLYLAMQFGIRTANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR
                     EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM
                     Y"
     gene            1184..2230
                     /gene="aroH"
                     /locus_tag="OQQ75_003583"
     CDS             1184..2230
                     /gene="aroH"
                     /locus_tag="OQQ75_003583"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroH"
                     /protein_id="HCS1977769.1"
                     /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK
                     ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG
                     WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA
                     IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT
                     IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR
                     QLEVCEDICQQIRNGSTAIAGIMAESFLREGTQKIVGGQPLTYGQSITDPCLGWEDTE
                     RLVEKLASAVDTRF"
     gene            2362..2553
                     /gene="hemP"
                     /locus_tag="OQQ75_003584"
     CDS             2362..2553
                     /gene="hemP"
                     /locus_tag="OQQ75_003584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HCS1977770.1"
                     /translation="MRYTDSRKLTPETDANHKTASPQPIRRITSQTLLGPDGKLIIDH
                     DGQEYLLRKTQAGKLLLTK"
     gene            complement(2557..3993)
                     /locus_tag="OQQ75_003585"
     CDS             complement(2557..3993)
                     /locus_tag="OQQ75_003585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HCS1977771.1"
                     /translation="MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNIELANTLSIP
                     SSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTM
                     DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
                     TAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLEDDEDKYRLW
                     FSDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSD
                     HQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLG
                     FMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDW
                     FARYRGRLQQDEVSDSERQQLIQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEAL
                     RNPFSDRDDDYVSRPPDWGKRLEVSCSS"
     gene            complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="OQQ75_003586"
     CDS             complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="OQQ75_003586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-FlhDC factor"
                     /protein_id="HCS1977772.1"
                     /translation="MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIP
                     TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAG
                     ELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFT
                     RVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHAL
                     QGCLWPAVPINQITTLVQR"
     gene            complement(5015..5479)
                     /locus_tag="OQQ75_003587"
     CDS             complement(5015..5479)
                     /locus_tag="OQQ75_003587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1977773.1"
                     /translation="MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS
                     WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDL
                     VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI"
     gene            complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="OQQ75_003588"
     CDS             complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="OQQ75_003588"
                     /EC_number="7.6.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter ATP-binding protein
                     BtuD"
                     /protein_id="HCS1977774.1"
                     /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA
                     RMAGMTSGKGRIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKT
                     RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVGLAAVVLQITPQANPAGQLLLLDEP
                     MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE
                     EVLTPPNLAQAYGMNFRRLDIEGHRMLILTI"
     gene            complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="OQQ75_003589"
     CDS             complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="OQQ75_003589"
                     /EC_number="1.11.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional thioredoxin/glutathione peroxidase"
                     /protein_id="HCS1977775.1"
                     /translation="MQDSILTTVVKDIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYE
                     QLENIQKAWADRGFVVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGE
                     GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGLVIQ
                     RFSPDMTPEDPIVMESIKLALAK"
     gene            complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="OQQ75_003590"
     CDS             complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="OQQ75_003590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter permease BtuC"
                     /protein_id="HCS1977776.1"
                     /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISLGDWF
                     TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI
                     AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM
                     TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE
                     ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL
                     PGCALAGASALLLADIVARLALAAAELLIGVVTATLGAPVFIWLLLKARR"
     gene            complement(8109..8438)
                     /locus_tag="OQQ75_003591"
     CDS             complement(8109..8438)
                     /locus_tag="OQQ75_003591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000997174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977777.1"
                     /translation="MNDDLERRVSCLESDVTEIKNNLITLTTRSESFATKSDVLEIRE
                     GLRLEMAESRQSLKSEMADLRQSLKVEMAEHRTELQKSFANQTWLLTGIVLSAMAVLV
                     AVVTVIK"
     gene            complement(8546..8908)
                     /locus_tag="OQQ75_003592"
     CDS             complement(8546..8908)
                     /locus_tag="OQQ75_003592"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977778.1"
                     /translation="MKFHLDELKRMATLDNFARFLNESSTNEKCLSCGDTDMYMYLTN
                     IVEVGPEPKTAEECDLGTFVMLDYIGPFTGYPGYEGHDRENIHNYEFRLTCNRCGFVH
                     RYSARAFMNWVGKQGDEK"
     gene            complement(8911..>9045)
                     /locus_tag="OQQ75_003593"
     CDS             complement(8911..>9045)
                     /locus_tag="OQQ75_003593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1977779.1"
                     /translation="MNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVRFNPLGGA
                     "
BASE COUNT         2389 a         2395 c         2050 g         2211 t
ORIGIN      
        1 gttgcgcaaa cctgctctat tcgacaattt ccacataaac catcggtata aacgaaacca
       61 taaaaatgaa atgctgtttt cataaaaaat aaaattgaag gttcatttta taaaccagac
      121 attacctcct acgcttctgt gcgtttttaa tttatgcttt catagaatta tgtctgcatc
      181 acgggaagaa caaaatggat aatgctgttg atcgccacgt tttttatatt tctgatggta
      241 cggcaataac tgcggaggta ttaggacacg cagtaatgtc acaatttccc gtcactatca
      301 gcagcattac gctgccgttt gtcgaaaatg agagccgtgc acgggcagtg aaggatcaga
      361 ttgacgcaat ttatcaccag acaggtgtgc gcccgctggt cttctactcc atcgtgttgc
      421 cggagattcg cgccatcatc ttgcaaagtg aaggcttttg ccaggatatc gttcaggcgc
      481 tggttgcccc gctacaacaa gagatgaaac tggatccaac gccgattgct catcgtaccc
      541 atggccttaa ccctaataat ctcaataaat atgatgcgcg cattgcggcg attgattaca
      601 cccttgccca cgatgacggc atttcgttgc gcaatctgga tcaggctcag gtgatcctgc
      661 tcggtgtttc tcgctgtggt aaaaccccca ccagtctgta tctggcaatg caatttggta
      721 tccgcacggc aaactacccc tttattgccg acgatatgga taatctggtg ctacccgcgt
      781 cgctcaaacc gcttcagcat aaattgttcg gcctgactat cgacccggaa cgtctggcgg
      841 cgattcgcga ggaacgtcgg gagaacagtc gctatgcctc gcttcgtcag tgcagaatgg
      901 aagtcgcgga agtggaagcc ttgtaccgta aaaatcagat cccgtggatt aacagtacca
      961 attattcggt agaagagatt gccaccaaga tcctcgatat catgggcctt agtcgccgaa
     1021 tgtactagag aactagtgcg ctggtttgtt ttttgttatc atgctaacca cccggcgagg
     1081 tgtgacacac ctcgcacttg aaatcagctg cgattggttt atcgtgatgc gcatcacttc
     1141 ccggtagtcc tgccgtagaa gcaacaaatt tctgagactt gtaatgaaca gaactgacga
     1201 actccgtact gcgcgtattg agagcctggt aacgcccgcc gaactcgcgc tacggtatcc
     1261 cgtaacgcct ggcgtcgcca cccatgtcac cgactcccgc cgcagaattg aaaaaatact
     1321 gaatggtgaa gataagcgac tgttggtcat tattggcccc tgctcgatcc acgatctcac
     1381 cgctgcaatg gagtacgcca cccgtctgca gtcgctgcgc aaccagtacc agtcacggct
     1441 ggaaatcgta atgcgcacct attttgaaaa accacgaact gttgtcggct ggaaagggct
     1501 aatctccgat ccggatttaa acggcagcta tcgggtaaat cacggtctgg agctggcgcg
     1561 caaattactt ttacaggtaa atgagctggg tgtccctacc gcgactgagt ttctcgatat
     1621 ggtgaccggt cagtttattg ctgatttaat cagttggggc gcgattggcg ctcgtactac
     1681 cgaaagtcag atccaccgcg aaatggcttc agcactctcc tgtccggtag gttttaaaaa
     1741 tggtaccgat ggcaacacgc ggattgccgt ggatgctatc cgcgcagccc gcgccagcca
     1801 tatgttcctc tcgccagaca aaaatggtca gatgaccatc tatcagacca gcggcaaccc
     1861 gtatggccac attattatgc gtggcggcaa aaaaccgaat tatcatgccg atgatatcgc
     1921 cgcagcctgc gatacgctgc acgagtttga tttacctgaa catctggtgg tggatttcag
     1981 ccacggtaac tgccagaagc agcaccgtcg ccagttagaa gtttgtgagg atatttgtca
     2041 gcaaatccgc aatggctcta cggcgattgc tggaattatg gcggaaagtt tcctgcgcga
     2101 aggaacgcaa aaaatcgtcg gcggtcagcc gctcacttac ggtcaatcca ttaccgaccc
     2161 gtgtctgggc tgggaagata ccgaacgcct ggtcgaaaaa ctcgcctctg cggtagatac
     2221 ccgcttctga atgcgtgccc attcctgatg ggatgggcat ttctgcgcaa cttgttgtct
     2281 tctcaacaca ttactgcttg ctctggcctg ccataatatt gataataaga atcattgtta
     2341 tatcaattat tattaatttt tatgcgttat acggatagca gaaaactcac gcctgaaacg
     2401 gatgccaatc acaagaccgc ttccccgcag cccatccggc gaattaccag ccagacactg
     2461 ttaggtccgg atggcaaact gattatcgat catgacgggc aagaatatct gctccgtaaa
     2521 actcaggctg gcaagctgct gttaactaag tagcctttaa ctcgagcagc tgacttccag
     2581 ccgtttaccc cagtcaggtg gacgactgac atagtcatca tctctgtcgc tgaaaggatt
     2641 tcgcaacgcc tcatgcaggc ggtgcaattc catcatatca cccttttctg ccgcttcaat
     2701 cgcccgttgc gccaaccagt tgcgcaatac cagagctggg ttaacgcttt gtatcagttg
     2761 ctgacgctca ctatcgctaa cctcgtcttg ttgcaaacgc ccccgataac gggcaaacca
     2821 gtcatcaaat gccgcacgat caataaactc atcacgtagc ggtgacgccg cgctgtgctg
     2881 ctcggtcaga ctcagcatgc ggaatgtgcg ggtataatcg ctgcgctctc gcgccatcag
     2941 actgaataat tcattcagta gcgcgttatc ctctttttgc tccgtcatga agcccagttt
     3001 ctgccgcatc cgttgtccat aatgcgtcaa caaaacctgc tgatagctgt ccagggcctc
     3061 attcagggca tctacggcaa caaatggtga caatgtctgc gccagacgct gtaaattcca
     3121 caacgcgaca gcaggttgat tatcaaagct ataacgccct tgatgatccg agtgattaca
     3181 aataaaaccg ggttcgtaat catcaagaaa accaaacggc ccgtaatcaa gcgtcagtcc
     3241 cagcagcgac atgttgtcgg tattcatcac cccatgtgca aagccgaccg tctgccattg
     3301 ggcaattaac gacgcggtac gtgcgacaac atcgctaaac cagagacggt atttgtcctc
     3361 atcatcttca agatgtgacc agtaatgacg aatagcaaag tcagctaact gacgaacctt
     3421 ttccgactcg cggcggtagt aaaaatgttc gaaatgacca aagcgcagat gacttggtgc
     3481 cacacgcatc agcatcgcgc ctggctccgc cgtttcccga tacactggcg aatcgctggt
     3541 gacgatactt aacgcgcggg tcgtcggaat gcccagataa tgcatcgcct cactggcgag
     3601 actttctcgt atcgtcgaac gtaaaaccgc ccgtccatca cccattcgcg aataaggcgt
     3661 caggccagca cctttcagat gccagtccat tgtagtgcca tcagcaagca gttgttcgcc
     3721 gagtaaaatg ccgcgcccat cacccagttg gcccgcccag acgccgaact gatgaccact
     3781 gtaaacctgc gccagtggtg acataccagg cagtagggct tcgccgcccc agacacctgc
     3841 gccattttta aacagcgacg atggaatact cagcgtgtta gccagttcga tattatgcca
     3901 aatcagccgg gcattattta aaggcgtagg ggaaagtgct gtataggttt ctggcaattc
     3961 atcgcgccag cgggtaacaa aagacagggt catagatcct cctgtttgat agtgtagacg
     4021 gttactctcg tcttaaacac cagcaaacag aagggttatc gctgaaccaa cgtcgttatc
     4081 tgatttatgg gaacggcagg ccacaggcat ccctggagag catggaaatc gaagggggta
     4141 atctgtgcca atatttctgc cgtatcaatg cctcccgcaa tgatgcaatt gcaacaaggg
     4201 gaaatttgcg cctggatcgc acgaataaac ggttcgaagg agcggtgcgt gatttgttgc
     4261 tgaataaaac ttttatccag catgacgcgg gtgaaaagac catcaaaaac cgctttcatt
     4321 gtgctattgc ctgctcccaa attacctaac acaaggggat acacttgcga taaggataaa
     4381 agaccgcgat tatcttttcc ttcattgaga tgcgggtaat tctcattaat caacagttca
     4441 ataaacggat attttaatag ttcgcctgcg taattatccc tctctaataa taatgtagcc
     4501 acttgtggcg ttaaattaag ccaggcaaag agtttatgtt gaataaaaaa atgttggcat
     4561 gattttagta attccaactg ctctgaaaat aattgccaat gttgctcctc ggtaagttgc
     4621 gctataaccc gactcgtcgg gatacgcacc gtgccatctt cactggagaa atgggtaatt
     4681 aactcaacgc cgacaaggac ttgctggtta tctcttatcg gcaggaaata gcaatcagaa
     4741 tgataaagat tctccaaaaa aatcttcatg gtaaccgtcc ctctcgaagg atgtttttca
     4801 gtatccggct aaaagggatg aggccataag acataacaat tacagaagga gtaactttca
     4861 tttgttccat gttaaccact ttttcagggg tcttttttta gattatcctg attataaacg
     4921 aataatccat ttacggaatt tttgtctgca aaatactact gtattcagga gtaaatggac
     4981 ggcgatgtat catcgccgtc catttttcga catactagat tcgtctcgcc tgccagaaat
     5041 ttttctgcca atagacatta tcaagtgagg aacgcatcac tcccttgctg gtagaggcgt
     5101 ggataaattg gttgttggta tcgtaaatac ctacatgcaa accattttgt ccggaccccg
     5161 ttttgaaaaa gaccaggtca cctggcagca acttgtcttt atcaatttgc gtgccaatag
     5221 aggcttgttg tttggtttca cggggcagct gcaaatcgaa acgatcgcgc atcgtcacaa
     5281 ccacaaatcc cgaacagtcc acaccgcgcc gcgtcatgcc accataacga tacggcgtgc
     5341 catgccagct ttgtagctgg tcgttcaaac cggcaataac ggtaatcgaa tcagaaagtc
     5401 tggcatttgg cggcggtgct ttatggtggc tacacccggc cagaaacagt gctgtgatca
     5461 aaataaggca gaaacgcatt ccgtacggtt cctctgtttt ttattcttgc attaatttag
     5521 cgtcgtaatt acccgatttt caagatacta atgaaatcag atggtcaaaa tcagcattct
     5581 gtgaccttcg atatccagac ggcgaaaatt catcccatag gcctgcgcca gatttggcgg
     5641 cgtgagcacc tcttctctgc gtccactggc cagcattttt ccacctttta gcaaccacgc
     5701 ccgatgcgca tgacgcaacg tgtggttgag atcgtgactg ctcatcacaa tcgccagtcc
     5761 ttgctgacac agcgcgctca gaattttgtc taacgcactt tgttgcgcaa catcaagact
     5821 gttcatcggc tcatcaagaa gcagcaattg gcctgcggga ttggcttgtg gtgtgatttg
     5881 caacaccacc gcagcaagac ctacgcgttg ccattcaccg ccggaaagtt gattggtgct
     5941 acgaccgagt ttgtcatcaa gagccagcgc ccctgcgaca tcattcagta gttcggtacg
     6001 cgttttatcg tgctgatgca gtgtcaggta gtgccagacc ggcattgcaa acggcggcgt
     6061 ctgctgttgt gaaagatagg cgcgatgcag cgcgagtttt gttgcggacc atgcttccag
     6121 gggttgcccc gcgaactgaa ttcttccctt accgctggtc attccggcca ttcgtgcaag
     6181 caaggtactc ttacccgcgc cattcggccc caccaggtgc aggatctccc cagcccgaac
     6241 ctcgccagaa agtggcccta ggcgggtaga ttccgcaaca tcctgtaact gcatcacaat
     6301 agacattatt ttgccaacgc cagtttaatg ctttccatca caatggggtc ttccggcgtc
     6361 atatccgggg aaaaacgctg gatgaccaat ccgtccctgc caactaaaaa tttctcaaaa
     6421 ttccataaaa tatcatcagg gtacagcggt gcacgacctt tgctgaccat acgggcatag
     6481 aatccgctct cttccggcgc gactgcggtc ggcgctgcgg caatcaattt ttgatacagc
     6541 ggatggcgtc cttcgccgtt aacttcaatc ttactgaaca tcgggaacgt caccccccat
     6601 gtggtggtac agtaagtttt aatctcttca tcgctgcccg gttcttgttc cagaaactgg
     6661 ttgcacggga atcccagcac cacaaaacct cgatcggccc aggctttctg aatattctcc
     6721 aactgctcat attgcggcgt taagccacac tttgaggcga cattgacaat caacagcaca
     6781 ttaccggcgt acttctccag cgtggtcact tcaccgtcga tatctttcac tacggtcgtc
     6841 agaatggaat cttgcatcgt ttctcctggg tgtggtcagt aaaaatctta gcttttaatc
     6901 atagaccgtc tttttgcggc taacgtcttg cttttaacaa taaccagata aacaccggcg
     6961 cacccaacgt tgcggtgacc acgccaataa gcagctctgc ggcagctaat gccaggcgcg
     7021 ctacaatatc ggccagcagc aatgcgctcg cccctgccag cgcgcagccg ggaagtaata
     7081 cgcgatgatc ggttaaacca cacaaccgaa gaatatgtgg gatcaccaga ccaataaagc
     7141 cgatagcacc cgccagcgcc acactgacgc caaccatcca gccggtcgcg gccaccagca
     7201 cattgcgcca gaaccacagg ggtaaaccca gttgccgcgc cgagatctcg ccaagtgcta
     7261 acatattcat cggcctggac tgacaacaga tccacaacaa cacggggatc aatgccagca
     7321 tcagccagct ttgccgccag tctacgccgc caaaaccgcc catcatccag tacatcagct
     7381 gacgtaaatc aacagaggtg gaaaagtaga tagcccacgt cattagtgcg ctacagataa
     7441 tccctaatgc aacgccagcc agcaataacc gactggtcga aagatgacga cgggcgaaac
     7501 gtaagagtat taaagtaatg ataagcgcgc cagcaatcgc acacagccct agcgcccagt
     7561 tggggagttg cccttgccca agcaataccg cggcgataag ccccacgcct gcgccgttag
     7621 agacgccaag tagtccaggt tctgccagag gattttcaaa caacgcctgc attacagcgc
     7681 cggatatagc cagcgccgca ccaaccaaca atacagccag cgtacgtggc aggcgaattt
     7741 gccagacgaa cagttcgcca cgaggagtaa accagtcacc tagcgagatc cattgttcac
     7801 cggcgcaaag gcttaaaaga agcgccagca gcatcaaaac tgacaggcat aataaccagc
     7861 gaatattttg tcgctgttgt tggcgggcaa gtgtcagcat ggtatccgtt ctgctgaagt
     7921 gtcatggcgt tgattttacg gtgactcttc gacagtgaaa agaaaaaagg ccgcagagcg
     7981 gccataaaca caagtaaaaa tcaacaagtt agataattat caaagactta cagacacaca
     8041 aaaacacagc caaccacaac aaataacagg gatgtggtca ctttgtggat catatcgccg
     8101 ccataaattt acttaataac agtaaccaca gccacaagca cggccatcgc agacaggaca
     8161 atacctgtga gtaaccaagt ctgatttgca aatgatttct gaagttcagt acgatgctca
     8221 gccatctcaa ctttcagaga ctggcgtaaa tcagccatct cagacttcag ggattggcgc
     8281 gattctgcca tctcaagcct caacccttcg cgaatctcca gtacatcaga tttggtagca
     8341 aaggattcgc ttcttgtggt gagagtaatc aggttgtttt tgatttcagt cacatcactt
     8401 tccaggcaac tgacccgccg ttcaaggtcg tcattcatgc catcacctcc atcattacca
     8461 cttcctgtta cttggttgtt ggatacatta taggcattct ctttcttttt tctgaaccgc
     8521 gaaatatgtg caacattctc tgccatcact tctcatcacc ctgcttgcct acccagttca
     8581 taaaggcccg ggccgagtaa cgatgaacaa acccacatct gttacaggta agtcggaatt
     8641 catagttatg gatattttcc cgatcatgtc cctcatatcc cggataccca gtaaatggac
     8701 cgatgtaatc aagcataaca aaagtgccta aatcacactc ctcagcagtt ttcggctcag
     8761 gccccacctc aacaatattc gtcaaataca tgtacatatc cgtatcgcca cacgacaaac
     8821 atttttcatt cgtagacgac tcattgagaa aacgcgcaaa attatcgagc gttgccattc
     8881 ttttaagttc atctaaatga aacttcactc ttaagcacct cctagtggat taaacctcac
     8941 cgcatcctgc aggtaatccg gcgcaagatg ggcataaatc atcgttgtct gaatctttgc
     9001 gtgccccaga attttctgga gcgtcagaat attgccgccg ttcat
//
LOCUS       DAJVUP010000169         8839 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.169, whole genome shotgun sequence.
ACCESSION   DAJVUP010000169 DAJVUP010000000
VERSION     DAJVUP010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8839
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.169"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(158..1129)
                     /locus_tag="OQQ75_003594"
     CDS             complement(158..1129)
                     /locus_tag="OQQ75_003594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000817038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family plasmid partition
                     protein"
                     /protein_id="HCS1977780.1"
                     /translation="MKRAPVIPRHTTHSQSTEDTSSPAPAAPMVDSLIARVGAMARGN
                     AISLPVCGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQ
                     TPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSA
                     YERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSA
                     RSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPASRVNLS
                     SRHQFAPGATALYKGDKMVLNLDRSRIPAECIEKIEAILKELEKPGV"
     gene            complement(1129..2295)
                     /gene="sopA"
                     /locus_tag="OQQ75_003595"
     CDS             complement(1129..2295)
                     /gene="sopA"
                     /locus_tag="OQQ75_003595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid-partitioning protein SopA"
                     /protein_id="HCS1977781.1"
                     /translation="MGLMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGE
                     AADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAE
                     DAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDL
                     HIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPA
                     DPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQ
                     FFDMLRDLLKNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRE
                     TDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR"
     gene            3036..4046
                     /locus_tag="OQQ75_003596"
     CDS             3036..4046
                     /locus_tag="OQQ75_003596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HCS1977782.1"
                     /translation="MTSENNSLLLNLQEVDKTTGEVVKLDVNSTSTVQPVALMRLGLF
                     VPTLKSTGKSKANRKNVTDATEELVQLAIAKSEGYTDVKITGSRLDMDTDFKVWLGII
                     RSMSEYGVKSDTLELSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETK
                     GWTTHLVQSAYYDINEDIVEIKAEPKLFELYHMDRRVLLRLKAIDALQRKESAQALYT
                     YIESLPQNPAPISMKRMRDRLNLTSNVYTQNHTVRKAMEQLRDIGYLDYTEFKRGRAT
                     YFSVHYRNPKLISSPVKVPRKEEEEKAPEQNYDEVIKALKAAGIDPLKLAEALSAMKP
                     EN"
     gene            complement(4852..5181)
                     /locus_tag="OQQ75_003597"
                     /pseudo
     CDS             complement(4852..5181)
                     /locus_tag="OQQ75_003597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371608.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
     gene            5299..6024
                     /locus_tag="OQQ75_003598"
     CDS             5299..6024
                     /locus_tag="OQQ75_003598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HCS1977783.1"
                     /translation="MAYSIGEFARLSGITATTLRAWQRRYGLLKPQRTEGGHRQYSDE
                     DVQQALKILDWVKKGVPIGQVKPLLERPTSRLTNNWLTLQQSMLQRLQDGKIESLRQM
                     IYDAGREYPRPELVANVLRPLRSQVSANVAAAMTLREILDGIIIAYTSFCLEGDKKAP
                     GDNILLSGWNLNDPCEVWLEALTRTGQGHRIDILPTPPATLAPEIFPDRHWLLVTRGK
                     LTAARKKQIEQWQQQVSLEVIIL"
     gene            6124..6534
                     /gene="uraH"
                     /locus_tag="OQQ75_003599"
     CDS             6124..6534
                     /gene="uraH"
                     /locus_tag="OQQ75_003599"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000750474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS1977784.1"
                     /translation="MKKTASLLMLTTLAFAPAAFSAPAGTLSVHILDQQTGMPPSDVT
                     VTLEKQQQDKWTPIASGKTDHDGRIKSLYPEDQDMQPGVYKVAFKTADYFHGKKLDSF
                     FPEIPVLFTVTRTNEKLHIPLLLSQYGYSTYKGS"
     gene            6637..7596
                     /locus_tag="OQQ75_003600"
     CDS             6637..7596
                     /locus_tag="OQQ75_003600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000208729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 and DUF1722 domain-containing protein"
                     /protein_id="HCS1977785.1"
                     /translation="MTTKPVLGISGCLTGSAVRFDGGHKRMGFVMDELAQWVSFRPVC
                     PEMAIGLPTPRPAIRLTLTDSGETQLRFSKPPHDDITQKMADFTADYLPKIGDLSGFI
                     VCAKSPSCGMERVRLYDENGNRGRKEGVGLFTAALLETYPWLPVEEDGRLHDPVLREN
                     FIERVFALHELNTLRAKGLTRRALLDFHSRYKLQLLAHHQAGYREIGPFVASLHEWED
                     LDAFFVAYREKLMTILKKPASRKNHTNVLMHIQGYFRNQLNSRQRVELRDVILHYRDG
                     LLPILAPLTLLKHYMAEYPDRYLMTQNYFDPYPDDLGLRLAVT"
     gene            7742..8830
                     /locus_tag="OQQ75_003601"
     CDS             7742..8830
                     /locus_tag="OQQ75_003601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1977786.1"
                     /translation="MITTLHIQNYRSIREMSLELEQLNIVFGPNGTGKSNIYKAIHLM
                     HSAAQGQFSQALANEGGILKVFWAGKTRSDQLRRMNLAVETETYEYELQVGFVEKLPY
                     PSQFQLDPVIKEESIWLSGQYRRPSSQLMKRKNQAVFLNNVHHEKVTHSGTLYENESV
                     FGQLGEPHLYPEVSQMRESLRNWRFYQEFSVSIGSAMRAPQVGFRSPVLASDGANLAA
                     AFQTIVEIGDELLLMRILDQAFPGCVFYSDNTGGRFRMMMQREGLSRPLEPAEFSDGT
                     LRFLCLAVALLSPRPPAFIALNEPENSLHPQMLPALASLIAEASRYSQIWLTSHSPEL
                     ANLIEKQRSFSLYQLSMVEGETKVERLG"
BASE COUNT         2235 a         2336 c         2254 g         2014 t
ORIGIN      
        1 cgacgcaggt gggaccgtgg tcccagggag ataacctgag cggcgataca ggtgggaccg
       61 tggtcccaga gagaatattc aggccagtta tgttttctgg cctgtgagaa aggaaatgaa
      121 gtaaagggag atcaccgtag actaaagcgt gtccgcatca gactcctggt ttctcaagct
      181 ccttaagaat ggcttctatt ttctctatac actccgcagg aatgcgggac ctatccaggt
      241 taagcaccat tttatcgccc ttatacaatg ctgttgcccc tggagcaaac tgatgacgtg
      301 agctcagatt aactcttgat gcgggagatt gtttcagtac ggatgttaaa agactaatga
      361 cctcttcagc ttcaaagatt agtcccgctt tcttctgatc gtggagagtc tcagcctgct
      421 gcttcagtaa ttcttcttta tctgcaaaag ccttctgaag ggcttcacct gaccgggcag
      481 acagttctcc aggatgtgca aacagggcaa caacggattt aggcaatttg gccgtattga
      541 tacagcgggt aatgatctta cgagagatgt tttccgcatc ggcaagcgca gaaatatttc
      601 ctgcaaactc attctgcagc cggcttgtat aacgcaggcc acgttcataa gcactcgtcg
      661 gccgataatc gttacccagt cgggacaatg cagccatctg ctcatcgtcc agttcaccaa
      721 ccagaacgcg ataatcactt tccgtcagga ttgcggcttt acggcgacgg ctgccgtcgg
      781 caatttctat gacatcagaa acccggcggc cgaaagctgg agtctgctga ccggtcagta
      841 aaaatgaagg aatgagatca tccagagcat cttcggtaag tagttcctga tcgcgctcat
      901 tgcctgacca tacgcgtgaa gcgctctcaa cagagtctcc ccggagcacc tcaagggtaa
      961 atttcacttc ccgtccacat accggaagag agattgcatt accgcgggcc atagcaccca
     1021 cgcgcgcaat taatgaatcc accatcggcg cggccggcgc cggtgatgaa gtatcttcag
     1081 tcgattgact atgtgtggta tgtcttggaa tgacaggagc acgcttcatt atctaatctc
     1141 ccagcgtggt ttaatcagac gatcaaaaat ctcattgcaa acaggctccc agatagagag
     1201 ggcattacgc caggcaccgg ttgaagaacg ttgatcaata gcctgttcaa aaacggttct
     1261 catacggatc tgacctttac cgacttcatc cgtttcgcgc acaacatttt taaggaccat
     1321 gcttccccag gcatcccgaa tttgttcttc catccacggg gactgtgagc cattattatt
     1381 actgtatttg gtaagcagaa tacggacatc tggctcgaag cctttaagat ccacgttctt
     1441 aagcaggtca cgaagcatat cgaaaaactg cagtgcggag gtgtagtcga acagctctgc
     1501 cggagtaggg acaatcagaa catcagcagc gcatacaaca tttatcgtac cgataccaag
     1561 gttgggtgca ctgtcgataa ctatcacgtc ataatcatga gcgacagttt caatggccag
     1621 acggagcatc aggtgcgggt cagcaggtaa tttgccttcg tcaaatttcc ccatcagctc
     1681 ggtttcaatg cggtgcagtg ccagacagga cgggatgata tcaaggccag gccagcaggt
     1741 gggctttata gcgtagctgg cgtcatcctt ttccccaaga taaaagggca ggagagtgtc
     1801 ctcagcatga atatgaagat cgggcaccca tccgtgatac atagaagcag ttccctgtgg
     1861 gtcattgcct tcaacaagca gaacacggag tcctttcaga gcaagatcct gagccaggtg
     1921 aacggatact gaggttttgt aaacaccacc tttgtgagct gcaacgccaa tcaccggcgg
     1981 aaacgcatct tcagcacggc gcagtcgtgt accaaataca tcccgcatgt gattgatttg
     2041 ttcgatggta taaccaacgc gttgctcaac tctcccacgg gtttccatat cagggtgcgg
     2101 cagccggcca gctttctcgg catccctgat agcctgagat gacacgccaa ctaaatctgc
     2161 cgcttcacca atcctccagc gccgggttat tttccgggct tccggactgt catcattaaa
     2221 ctgtgcaatg gcgattgctt tcgtcatttc atgaccagca cttatgcact ggttgagtgt
     2281 atccatgagt cccatactga acatccttta atcatcactt tgcattattt tattaaatct
     2341 tggaatttat tgcaaagcaa caataaaatc gcaaagcaca cgaaaaagtg caaagtgaac
     2401 cacattgggt aatgaaagaa cgcaggggat tacaaaagag tacataccgc agtcaatatt
     2461 aatcactgcc gctcgccgca gtaagcgatc tcacacagtg agaaagcggc gaggaagcgg
     2521 aaaatcacag aactcacaga ttgcacgtac gtcgggttgc taaagatgac tcgggatcag
     2581 ccagttataa tgaaattgac tgcggtatgt aatatattga ctatggtatg atgcttaccg
     2641 catctgtagg aaagacgact cagcataccg cagtcaatgt ttcattgttg tacctgtaga
     2701 tctcaatctt ccagagcgta ttcaggaaaa tcaggccagg ggtctggata tctggtgtgg
     2761 cgcttccggc cttgtatctg ggttattcat ggtctcgatc caataattga tcccaaggag
     2821 atcatagtga gatccaaaag agatccccgg atcgctccag catgcgctgt aactggcttt
     2881 aacgtctgtc tggatcgact gcggaatgta aaatgttgac tgttatatgc ataatctaat
     2941 actgtgatat gcaacggtat ttactgaggt atgtatatcc gttgactgcg atacgtatta
     3001 ctacatcctt ttgtggataa ccgttgagga tcaagatgac gagcgaaaat aatagcttac
     3061 ttctgaacct tcaggaagtt gataagacaa ccggtgaagt tgttaagctg gatgtcaaca
     3121 gcaccagtac cgtgcagcca gtagcgctca tgagactcgg tctcttcgtc ccaactctga
     3181 aatcaacagg gaagagcaag gcgaaccgga aaaacgttac agacgcgact gaggagcttg
     3241 tacagctggc cattgccaaa agcgaaggat acactgacgt taagatcacc ggttcgcgtc
     3301 ttgatatgga cacggatttt aaagtctggc tggggataat tcgctccatg tcggagtatg
     3361 gggtaaaaag tgacaccctg gaactgtcgt tcgtcgaatt cgttaagatg tgcggatttg
     3421 actcccgtcg ttcaaacaaa aaaatgcgcg atcgcatcag taattccctg tttaaactcg
     3481 cctcggttac gctgaagttc cagagcgaga ccaaaggatg gaccacccat ctggtgcagt
     3541 cagcctatta tgacatcaac gaggatatcg ttgagatcaa ggctgaacct aagctgtttg
     3601 agctttacca catggacaga agggtactgc tgcggctgaa agccattgac gccctgcagc
     3661 gcaaggaatc agcccaggcg ctttatacct acatcgaaag tcttccccag aatcctgcac
     3721 ctatttccat gaaacggatg cgtgaccggc tgaatctcac ctcaaatgtc tatacacaga
     3781 accacacggt gcgtaaggcg atggagcagc tgcgtgatat tggttatctg gattacaccg
     3841 agtttaaacg tggccgagcc acctatttca gcgtgcatta tcgcaacccc aaactcatca
     3901 gtagtcctgt gaaggttccg cgcaaagagg aagaagagaa ggcgccagag caaaattatg
     3961 acgaagtcat taaggcgctg aaggctgctg gcatcgatcc tcttaaactg gctgaagccc
     4021 tctcagcgat gaagccagaa aattgactgc gatatgcata tcatgactgc cgtatgccgc
     4081 taaggacatt ccattgactg tgatatgcat cacgcatacc gcagtcaata tttattctct
     4141 atcatgtctg cccggatcga acaatattga ctgtcatatg tgatttcggg tcatgatacg
     4201 cagatattga ctacggaatg cgggtttaat gggggtaatc cctggtctgt tcaccattcc
     4261 atgggggata acatgccaca gtcaattttt cagtaacgct ctatatccct tacgaaaatc
     4321 tcaatcgggt gctgagacgg tcatgttacc tgacggtatc cgttcccctg tgtactgcag
     4381 gtttagcccg gcaggatgag actgcagctg tctgtataac ccggcgccag cttcacactg
     4441 ttaaatgcga tcaggaaacg ggagccgaat ggcagaaagg tgttggctag ggaaggtgcg
     4501 aataagcagg ttatttcttc ccaagctgac tcgctgatta aaatttcgcg gatctgggcc
     4561 gatttttttc ccgcaaacac atcgaatcag cctatttagg ggtcagtttg gagatcggaa
     4621 atttttgtac gttaagcaca ttatttaacc aattcggata cgtaagtgat tgatttatcg
     4681 tcattggcta tcgcttttag gttgtcgctc ttgctgtatc gcatttaggt tatccgatta
     4741 agacaaaatc ccctgaaaac gctgtatagc gcgggagtac accctattgc tacaggtaag
     4801 cctgttcaaa aaacaggctt accgtacaat aattctctat atccaaactg accccaagaa
     4861 ggacaccttc agcgcggccg tggtcggttc gccggtaaag taggctttac cctcgctctc
     4921 attccacttg ttcttcacag ggtcgtagcc gcggttaagc acgctgatgc cgccgtcgct
     4981 gcgcttgccg taggtggcgg taacctgctc taggccgcgt tcaaagcggt tttccaggcg
     5041 agcgacttcg taccatttgc caagatagcg gctggcgtca aaaccggaaa tgggctgcac
     5101 gcccttcggt ggggtagggg atttacaggc taccagcgtc agggcaatgg caacaccggt
     5161 cacaacaggc catagcttca tgagaattcc tttcatttgc acggttggaa attaagtgta
     5221 gtgcaccgcg gcggcgcttc atcccatccg cgaaaattcg tagtatattg agagtattcc
     5281 tcaactctgg acacggacat ggcttactcc atcggcgaat tcgccagact cagcgggatc
     5341 accgccacca cgctgcgggc ctggcagcgg cgctacggct tactcaagcc tcagcgcacg
     5401 gagggcggcc accgccagta cagcgatgag gacgtccagc aggcgctaaa aatcctcgac
     5461 tgggtaaaaa aaggcgtccc gattggccag gtcaaaccgc tgctggagcg ccctacgtcg
     5521 cgcctgacca acaactggct cacgctgcag cagagcatgt tacagcgcct gcaggacggc
     5581 aaaatcgagt ccctgcgtca gatgatttac gacgcaggac gcgagtaccc aagaccagaa
     5641 ctggtcgcga acgtgctgcg tccgctgcgc agtcaggtgt cggcaaacgt cgccgccgcc
     5701 atgaccctgc gggagatcct cgacggcatc atcatcgcct acacctcgtt ttgcttggaa
     5761 ggcgataaaa aagcgccggg cgacaacatc ctgctcagcg gctggaacct gaatgacccg
     5821 tgcgaagtct ggctcgaagc cttaacccgc accgggcaag gccaccgtat cgatatttta
     5881 cccacgccgc ccgccacgct ggccccggag attttcccgg accgccactg gcttctggtc
     5941 acgcgcggta aactcaccgc cgcgcgcaaa aagcagatcg agcagtggca gcagcaggta
     6001 tcgcttgaag tgattatcct ctaatcattt tctcctgcgg gaatcttcac gaaaagttga
     6061 atattttccc gcgccacaaa tgctaacgtt ttcctgtgac cgacaacccc acaggaaaac
     6121 acaatgaaaa aaactgcctc tctgctgatg ctgaccaccc tggcctttgc ccctgccgcc
     6181 tttagcgccc ctgccggcac gctgagcgta cacattcttg accagcaaac cgggatgccg
     6241 ccatcggacg ttaccgtcac gctggaaaaa cagcagcagg acaaatggac cccaattgcc
     6301 agcggcaaaa ctgaccatga cggccgcatc aaatcgcttt atccggagga tcaggatatg
     6361 cagcccggcg tctataaagt ggcctttaaa accgcagatt acttccacgg gaagaagctg
     6421 gactccttct tcccggagat cccggtgctg ttcaccgtaa cccggaccaa cgaaaagctg
     6481 cacatccctc tcctgctgag ccaatacggt tattcaactt acaagggcag ttaagaaacg
     6541 ttgattttaa aggcaaataa aaaataattc cgctaatact tggacaaatt agttatgttg
     6601 tgtaagtttt aaagagaaga acgggaggac cacaccatga caacaaaacc tgtgctcggt
     6661 attagcggat gtttgaccgg gtctgccgtt cgcttcgacg gcggacacaa gcgtatgggc
     6721 tttgtcatgg atgaactggc ccagtgggtg agtttcaggc ccgtctgccc ggaaatggcg
     6781 attggcctgc cgacgccacg cccggccata cgcctgacgc tgacggacag cggcgaaacg
     6841 cagctccgct tcagcaagcc gccccatgat gatataacgc agaaaatggc cgactttacg
     6901 gcggactatc tgccaaaaat cggcgatctg tcgggattta tcgtctgcgc gaaatcgcca
     6961 agctgcggca tggaacgcgt gcggctatat gatgaaaacg gcaaccgggg ccgcaaggag
     7021 ggtgtcgggc tgttcaccgc cgccctgctt gaaacctacc cgtggctgcc cgtggaggaa
     7081 gacggtcggc tgcacgaccc ggtgctgcgg gaaaacttta tcgagcgggt atttgccctg
     7141 cacgagctga acacgctgcg cgctaaaggc ctgacgcgcc gcgcgctgct ggatttccac
     7201 agccgctata aattgcagct tctggcgcac catcaggcgg gctaccgcga gattggcccg
     7261 ttcgttgcgt cgctgcatga atgggaagat ctggacgcgt tcttcgtggc gtaccgcgaa
     7321 aagctgatga ccatcctgaa aaagcccgcc tcgcggaaaa accataccaa cgtgctaatg
     7381 catatccagg gctatttccg taaccagctg aacagccgcc agcgcgtcga gctgcgcgat
     7441 gtgatcctgc actatcgcga cgggctgcta cccatcctcg cgccgttgac gctactgaaa
     7501 cactacatgg ccgaataccc tgaccggtat ctgatgacgc aaaactactt tgatccctat
     7561 cctgatgatt tgggtctgcg tctggcagta acctgacgat aaaaatgcga aggcccgttt
     7621 gacccacaga ggcccaaagc agtaccccgt ttagacgaca ccctcactgt cgtctctttt
     7681 ttgcattcca cacaaaagac tgtaattatg tacaggattg taacgcaaaa agggactgcc
     7741 tgtgatcacc accctgcaca ttcaaaacta ccgctcgatt cgcgaaatgt cgctggagct
     7801 ggaacagctc aacatcgtct ttggcccaaa cggcaccgga aaatccaata tctacaaggc
     7861 gatccacctg atgcacagcg ccgcacaggg gcagttttcg caggcactgg cgaacgaggg
     7921 tgggatttta aaagtgttct gggcaggcaa aacccgcagc gaccagctgc ggcggatgaa
     7981 tttggccgtt gaaaccgaaa cctacgaata cgagctgcag gtaggctttg tcgaaaaact
     8041 gccttacccc tcacagtttc aactcgatcc ggtgatcaaa gaagagtcca tctggctgag
     8101 tggtcaatac cgccgcccgt cgtcacagct gatgaagcgt aaaaatcagg ccgtatttct
     8161 gaacaacgtg catcacgaga aagtcaccca cagcggcacg ctgtatgaga acgaatcggt
     8221 gttcggccag cttggcgagc cgcatcttta cccggaagtg tcgcagatgc gcgagtcgct
     8281 gcgtaactgg cgcttttatc aggagttttc tgtatcaatc ggctcggcca tgcgcgcgcc
     8341 tcaggtcggt ttccgctccc cagtgctggc cagcgacggc gcaaacctgg cggcggcgtt
     8401 tcagaccatc gtggaaattg gcgacgagct gctgctgatg cgcatcctcg accaggcctt
     8461 ccccggctgc gtgttttaca gcgacaacac cggcggacgc ttccggatga tgatgcagcg
     8521 tgaagggcta agcagaccgc tggagccggc ggaattctcc gacggcactc tgcgttttct
     8581 gtgcctggcg gtggcgctat taagcccgcg tccaccggcc tttatcgccc tcaacgaacc
     8641 ggaaaacagc ctgcatccgc agatgctgcc cgcgctggcg agcttaatcg ccgaggccag
     8701 ccgctactcg caaatttggc tgaccagcca ctcgccggaa ctggcgaatt taattgagaa
     8761 acagagatcg ttttcgctgt atcagctgtc gatggtggaa ggagaaacga aggtggagag
     8821 gctggggtag tctcccaga
//
LOCUS       DAJVUP010000170         8734 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.170, whole genome shotgun sequence.
ACCESSION   DAJVUP010000170 DAJVUP010000000
VERSION     DAJVUP010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.170"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ75_003602"
     CDS             244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ75_003602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit alpha"
                     /protein_id="HCS1977787.1"
                     /translation="MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAE
                     TSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVE
                     EATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPG
                     RSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPI
                     GSRHPNPKAAELELRLEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTG
                     CWAHRRGTLLVHADLTFENLSHTRSAL"
     gene            1152..1757
                     /gene="ttdB"
                     /locus_tag="OQQ75_003603"
     CDS             1152..1757
                     /gene="ttdB"
                     /locus_tag="OQQ75_003603"
                     /EC_number="4.2.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit beta"
                     /protein_id="HCS1977788.1"
                     /translation="MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELK
                     RPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGK
                     GGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRGKEF
                     GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK"
     gene            1806..3269
                     /gene="ttdT"
                     /locus_tag="OQQ75_003604"
     CDS             1806..3269
                     /gene="ttdT"
                     /locus_tag="OQQ75_003604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-tartrate/succinate antiporter"
                     /protein_id="HCS1977789.1"
                     /translation="MKPSTEWWRYLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVI
                     VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVFGFSNSV
                     IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA
                     RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL
                     IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETEL
                     QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLHIISWDDIVSN
                     KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRY
                     FFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG
                     SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL"
     gene            complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="OQQ75_003605"
     CDS             complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="OQQ75_003605"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001264383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HCS1977790.1"
                     /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP
                     ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW
                     NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
                     AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA
                     ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR
                     AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL
                     PAA"
     gene            4562..4777
                     /gene="rpsU"
                     /locus_tag="OQQ75_003606"
     CDS             4562..4777
                     /gene="rpsU"
                     /locus_tag="OQQ75_003606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HCS1977791.1"
                     /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE
                     RKRAKASAVKRHAKKLARENARRTRLY"
     gene            4888..6633
                     /gene="dnaG"
                     /locus_tag="OQQ75_003607"
     CDS             4888..6633
                     /gene="dnaG"
                     /locus_tag="OQQ75_003607"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1977792.1"
                     /translation="MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHN
                     EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG
                     SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF
                     APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF
                     GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY
                     GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ
                     LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLS
                     TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT
                     MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR
                     GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE
                     ERLELWTLNQELAKK"
     gene            6828..8669
                     /gene="rpoD"
                     /locus_tag="OQQ75_003608"
     CDS             6828..8669
                     /gene="rpoD"
                     /locus_tag="OQQ75_003608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HCS1977793.1"
                     /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
                     IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM
                     REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD
                     LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR
                     EKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM
                     MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS
                     EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK
                     KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
                     RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME
                     TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID
                     MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD"
BASE COUNT         2110 a         2330 c         2333 g         1961 t
ORIGIN      
        1 cctgcaagtc tttggctaaa ggccagctat tcagcatcgt taattatccg cagttgtgat
       61 aagcgcagtg tatttcgcaa aacattgcca ttccctgctc tggcgcaata ttcattctta
      121 ttttcgcgtt gattcacgaa ctgttaatta catattcacg gtggcaaaaa atataaaacc
      181 acatttttag tggtagttta tggcggtgaa tttttccaga caaatacaaa aactggagtt
      241 gccatgatga gcgaaagtaa taagcaacag gcagtgaata agttgacaga gattgtcgct
      301 aactttaccg ccatgatttc tacccgaatg cctgatgacg tggtggataa actaaaacag
      361 ctaaaggatg ccgaaacgtc gtcgatgggg aaaattatct accatacgat gttcgacaac
      421 atgcaaaaag cgattgacct gaatcgtcct gcctgtcagg acaccgggga gattatgttc
      481 ttcgttaaag tcggttcccg cttcccactg cttggcgagc tgcaaagcat actcaaacaa
      541 gccgtggaag aggcaaccgt caaagcgcca ctacgtcaca atgcggtaga aatttttgac
      601 gaagtaaaca ccggcaaaaa taccggtagc ggcgtaccgt gggtcacctg ggacatcatc
      661 cccgacaatg acgatgcgga aatcgaagtt tacatggcag gtggcggctg cacgctacct
      721 ggccgctcga aagtgttaat gccgtcagaa ggctacgaag gcgtggtgaa attcgtcttc
      781 gaaaatatct ccaccctcgc cgtaaacgcc tgtccaccgg tactggtggg cgtgggcatc
      841 gccacctcgg tggaaaccgc cgccgtactc tcgcgtaaag ccattttgcg cccgattggc
      901 agccgccatc ccaatccaaa agcggcagaa ctggagctac gcctggaaga aggactcaac
      961 cgtctgggga ttggtccaca agggctgact ggcaacagtt cagtgatggg cgtacatatc
     1021 gaatctgccg cccgccatcc gtcaaccatc ggcgttgctg tctctaccgg ctgctgggcg
     1081 catcgtcgcg gcacactgct ggttcatgcc gatctcacct ttgaaaatct gtctcacacc
     1141 cggagcgcgt tatgaaaaag atcctgacaa ccccgatcaa agctgaagat ctgcaagata
     1201 ttcgcgtcgg cgatgtgatc tacctgaccg gtacgctggt gacctgccgt gacgtttgtc
     1261 accgccgctt gatcgaactg aaacgtccga tcccttacga tctcaacggc aaagcgattt
     1321 tccacgctgg ccccatcgtg cgcaaaaacg gcgataaatg ggagatggtt tccgttggcc
     1381 cgacaaccag tatgcgtatg gaaagttttg aacgtgaatt tatcgagcag accggcgtga
     1441 aactggtggt tggcaaaggc ggaatggggc cgctgaccga agaaggctgc cagaaattca
     1501 aggcgctaca tgtgattttc ccggcaggct gcgcggtgct ggcggcaacc caggtggaag
     1561 agattgaaga agtgcactgg acagagctcg gaatgccgga gtcgctgtgg gtctgccggg
     1621 gcaaagagtt cggcccgctg attgtctcta ttgataccca cggcaacaat ctgatagccg
     1681 aaaacaaaaa gctgttcgcc gaacgccgcg atcccatcgt ggaagagatc tgcgagcacg
     1741 tccattacat caaataaccc tcccggagag gctcgccccc tctccttttt cgcaggcata
     1801 acacgatgaa accttccact gaatggtggc gataccttgc gccgctggcg gtcatcgcca
     1861 ttattgctct aattccggtt cccgcagggc tggagagtca tacctggctc tactttgccg
     1921 tttttactgg cgtgatcgtt ggactgatcc tcgaacccgt gccgggtgcc gtggtggcga
     1981 tggtgggtat ctccatcatc gccatactct ctccctggct gctgttcagc cccgaacagc
     2041 tcgcccagcc aggctttaag ttcaccgcca aatccctctc ctgggcagtt tttggttttt
     2101 ctaattcggt tatctggctc attttcgccg cctttatgtt tggcacaggc tatgaaaaaa
     2161 ccgggcttgg acgccgcatt gcgctgattc tggtgaaaaa gatgggacat cgcacgctgt
     2221 ttctcggcta tgcggtgatg ttctccgagc tgatcctcgc acctgtaaca ccgtccaact
     2281 cggcgcgtgg tgcggggatt atctatccca tcatccgtaa cctgccaccg ctctatcaat
     2341 cacaaccaaa cgacagcagt tcgcgcagca ttggctcgta catcatgtgg atggggattg
     2401 ttgccgactg cgtgaccagc gccattttct tgacggcgat ggcaccaaac ttgctgttaa
     2461 ttggactgat gaaaagcgca tctcacgcca cgctgagttg gggcgactgg ttcctcggga
     2521 tgttgccgct cagtattttg ctggtgctgc tggttccctg gctggcttat gtgctgtacc
     2581 cgccggtact gaagtctggc gatcaggtgc cgcgctgggc agagacggaa ctgcaggcaa
     2641 tgggcccgct ctgttcgcgt gaaaaacgga tgctggggct gatggtaggc gcgctggtgc
     2701 tgtggatttt cggcggtgat tatatcgatg ccgcgatggt cggttacagc gtggtggcac
     2761 tgatgctgct tctgcacatt atcagttggg acgacattgt cagtaataaa gcggcgtgga
     2821 acgttttctt ctggctggcc tcgcttatca ccctcgctac cggactcaac aacactggtt
     2881 ttattagctg gtttggcaaa ctgttagcag gcagcttaag cggttattcg ccaacgatgg
     2941 tgatggtggc gttgattgtg gtgttttatc tgctgcgcta ctttttcgcc agcgccacgg
     3001 cgtatacctc cgccctcgca ccgatgatga ttgccgctgc gctggcgatg ccggaaatcc
     3061 cgctgccggt gttctgccta atggttggcg cggcaattgg tctggggagc attcttacac
     3121 catacgccac cggacccagt ccgatttact acggtagtgg ttatctgcca acggcggatt
     3181 actggcgact gggggcgatt tttgggctga tattcctcgt gttgctggtg attaccggct
     3241 tactgtggat gcccgtggtg ttgctttaag tgaggacggt gccggaaatt gctctccggc
     3301 acccaatagt tttacgcagc cggtaactcc gccagcggcc agcgcggacg cacgctaacg
     3361 ccgagatccg ccgtcgcgcc tgctttaaac cgcaccattc cggcataggc gatcatcgcg
     3421 ccgttatcag tacaaaactc cggacgcgcg tagaacactt cgccgcggcg ttttttcatc
     3481 atttccgcca gcttcgcccg taacgtgcgg ttagcactca cgccgcccgc catgaccagt
     3541 cgcttaaagc ccgtctgatc caacgctcgc ttacacttaa tcatcaacgt atcgaccacc
     3601 gcatcttcaa aggcgcgggc gatatcagca cgcgtctggt cgtcggtgcc gttgtcacga
     3661 atcgtgttcg ccgcaaaggt tttcagacca gaaaagctga aatccagccc cggacggtcg
     3721 gtcatcggac gcgggaaaac aaagcgcccg gcagtaccct gagccgccat tttcgacagt
     3781 aacggtccgc caggataatc cagccccagc agcttcgcgg ttttatcaaa cgcttcaccg
     3841 gcggcatcat cgatagactc gccgagcagc tcgtactgac caatgccagt cacgctgatt
     3901 aactgcgtat gaccgccgga caccagcagc gcgacaaacg gaaattccgg cgggttatct
     3961 tccagcatcg gcgctaacag atgcccttcc atatggtgta ccgggattgc cggaacgttc
     4021 caggcaaacg ccagagaacg ccccacggtt gcgccaacca gcagtgcgcc gactaatcca
     4081 gggcctgcgg tataggccac agcatcaatg tcttttgccg ttaagccaga ctcctttagc
     4141 gccgcctgga tcaacggtac ggttttgcgc acgtgatcgc gggaggccag ttcaggcacg
     4201 acgccgccgt agtcagcgtg caatttcacc tgactataca attggttggc taacaaacct
     4261 ttttcatcgt cgtaaatggc gatgccggtt tcatcgcagg aagtttcaat acccagtaca
     4321 cgcatgactt gttttacctc gctttattac cgcgcagtgt aggaccaatg cgggttgatg
     4381 taaaactttg ttcgcccctg gagaaagcct cgtgtatact cctcaccctt ataaaagtcc
     4441 ctttcaaaaa ggccgcggtg ctttacaaag cagcagcaat tgcagtaaaa ttccgcacca
     4501 ttttgaaata agctggcgtt gatgccagcg gcaaaccgaa ttaatcaaag gtgagaggca
     4561 catgccggta attaaagtac gtgaaaacga gccgttcgac gtagctctgc gtcgcttcaa
     4621 gcgttcctgc gaaaaagcag gtgttctggc ggaagttcgt cgtcgtgagt tctatgaaaa
     4681 accgactacc gaacgtaagc gcgctaaagc ttctgcagtg aaacgtcacg cgaagaaact
     4741 ggctcgcgaa aacgcacgcc gcactcgtct gtactaattc cccgagagcg ttgctctccg
     4801 atcagaccga gttgtagttg taaggccgtg cttccgaaag gaatgcgcgg cttattttcg
     4861 tttatgaatt gctaaaaatc ggggcctatg gctggacgaa tcccacgcgt attcattaat
     4921 gatctactgg cacgcactga catcgtcgat ctgatcgatg cccgtgtgaa gctgaaaaag
     4981 cagggcaaga atttccacgc gtgttgtcca ttccacaacg agaaaacccc gtcattcacc
     5041 gttaacggtg agaaacagtt ttaccactgc tttggatgtg gcgcgcacgg caacgcgatc
     5101 gacttcctga tgaactacga caagcttgag ttcgtcgaaa cggtcgaaga gctggcagca
     5161 atgcacaatc ttgaagtgcc atttgaagca ggcagcggcc ccagccagat cgagcgccat
     5221 cagaggcaaa cgctttatca gttgatggac ggtctgaata cgttttacca acaatcttta
     5281 caacaacctg ttgccacgtc tgcgcgccag tatctggaaa aacgcggatt aagccacgag
     5341 gttatcgctc gctttgcgat tggttttgcg ccccccggct gggacaacgt cctgaagcgg
     5401 tttggcggca atccagaaaa tcgccagtca ttgattgatg cggggatgtt ggtcactaac
     5461 gatcagggac gcagttacga tcgtttccgc gagcgggtga tgttccccat tcgcgataaa
     5521 cgcggtcggg tgattggttt tggcgggcgc gtgctgggca acgatacccc caaatacctg
     5581 aactcgccgg aaacagacat tttccataaa ggccgccagc tttacggtct ttatgaagcg
     5641 cagcaggata acgctgaacc caatcgtctg cttgtggtcg aaggctatat ggacgtggtg
     5701 gcgctggcgc aatacggcat taattacgcc gttgcgtcgt taggtacgtc aaccaccgcc
     5761 gatcacatac aactgttgtt ccgcgcgacc aacaatgtca tttgctgtta tgacggcgac
     5821 cgtgcaggcc gtgatgccgc atggcgagcg ctggaaacgg cgctgcctta catgacagac
     5881 ggccgtcagc tacgctttat gtttttgccg gatggcgaag accctgacac gctggtacga
     5941 aaagaaggta aagaagcgtt tgaagcgcgg atggagcagg cgatgccact ctccgcattt
     6001 ctgtttaaca gcctgatgcc gcaagttgat ctgagtaccc ctgacgggcg cgcacgtttg
     6061 agtacgctgg cactgccatt gatatcgcaa gtgccgggcg aaacgctgcg aatatatctt
     6121 cgtcaggaat taggcaacaa attaggcata cttgatgaca gccagcttga acgattaatg
     6181 ccaaaagcgg cagagagcgg cgtttctcgc cctgttccgc agctaaaacg cacgaccatg
     6241 cgtatactta tagggttgct ggtgcaaaat ccagaattag cgacgttggt cccgccgctt
     6301 gagaatctgg atgaaaataa gctccctgga cttggcttat tcagagaact ggtcaacact
     6361 tgtctctccc agccaggtct gaccaccggg caacttttag agcactatcg tggtacaaat
     6421 aatgctgcca cccttgaaaa actgtcgatg tgggacgata tagcagataa gaatattgct
     6481 gagcaaacct tcaccgactc actcaaccat atgtttgatt cgctgcttga actgcgccag
     6541 gaagagttaa tcgctcgtga gcgcacgcat ggtttaagca acgaagaacg cctggagctc
     6601 tggacattaa accaggagct ggcgaaaaag tgatttaacg gcttaagtgc cgaagagcga
     6661 tcgggaagcc cccgacagcc gcactgagag gcagcggcaa atatataagt acgccctcgt
     6721 aattatcgtt ggcggtaaac aaccgttgga tttcagcgtt aacggctgaa ggacatcggg
     6781 tcaatcgccc aacaccaacc tcatgaaata agtgtggata ccgtcttatg gagcaaaacc
     6841 cgcagtcaca gctgaaactt cttgtcaccc gtggtaagga gcaaggctat ctgacctatg
     6901 ccgaggtcaa tgaccatctg ccggaagata tcgtcgattc agatcagatc gaagacatca
     6961 tccaaatgat caacgacatg ggcattcagg tgatggaaga agcaccggat gccgatgatc
     7021 tgatgctggc tgaaaacacc gcggacgaag atgctgccga agccgccgcg caggtgcttt
     7081 ccagcgtgga atctgaaatc gggcgcacga ctgacccggt acgcatgtac atgcgtgaaa
     7141 tgggcaccgt tgaactgttg acccgcgaag gcgaaattga catcgctaag cgtattgaag
     7201 acgggatcaa ccaggttcaa tgctccgttg ctgaatatcc ggaagcgatc acctatctgc
     7261 tggaacagta cgatcgtgtt gaagcagaag aagcgcgtct gtccgatctg atcaccggct
     7321 ttgttgaccc gaacgcagaa gaagatctgg cacctaccgc cactcacgtc ggttctgagc
     7381 tttcccagga agatctggac gatgacgaag atgaagacga agaagatggc gatgacgaca
     7441 gcgccgatga tgacaacagc atcgacccgg aactggctcg cgaaaaattt gcggaactac
     7501 gcgctcagta cgttgtaacg cgtgacacca tcaaagcgaa aggtcgcagt cacgctgccg
     7561 ctcaggaaga gatcctgaaa ctgtctgaag tattcaaaca gttccgcctg gtgccgaagc
     7621 agtttgacta cctggtcaac agcatgcgcg tcatgatgga ccgcgttcgt acgcaagaac
     7681 gtctgatcat gaagctctgc gttgagcagt gcaaaatgcc gaagaaaaac ttcattaccc
     7741 tgtttaccgg caacgaaacc agcgatacct ggttcaacgc ggcaattgcg atgaacaagc
     7801 cgtggtcgga aaaactgcac gatgtctctg aagaagtgca tcgcgccctg cagaaactgc
     7861 agcagattga agaagaaacc ggcctgacca tcgagcaggt taaagatatc aaccgtcgta
     7921 tgtccatcgg tgaagcgaaa gcccgccgtg cgaagaaaga gatggttgaa gcgaacttac
     7981 gtctggttat ttctatcgcc aagaaataca ccaaccgtgg cttgcagttc cttgacctga
     8041 ttcaggaagg caacatcggt ctgatgaaag cggttgataa attcgaatac cgccgtggtt
     8101 acaagttctc cacctacgca acctggtgga tccgtcaggc gatcacccgt tctatcgcgg
     8161 atcaggcgcg caccatccgt attccggtgc atatgattga gactatcaac aaactcaacc
     8221 gtatttctcg ccagatgctg caagagatgg gccgtgaacc gacgccggaa gaactggctg
     8281 aacgtatgct gatgccggaa gacaagatcc gcaaagtgct gaagatcgcc aaagagccaa
     8341 tctccatgga aacgccgatc ggtgatgatg aagattcgca tctgggggat ttcatcgagg
     8401 ataccaccct cgagctgccg ctggattctg cgaccaccga aagcctgcgt gcggcaacgc
     8461 acgacgtgct ggctggcctg accgcgcgtg aagcgaaagt tctgcgtatg cgtttcggta
     8521 tcgatatgaa caccgaccac acgctggaag aagtgggtaa acagttcgac gttacccgcg
     8581 aacgtatccg tcagatcgaa gcgaaggcgc tgcgcaaact gcgtcacccg agccgttctg
     8641 aagtgttgcg tagcttcctg gacgattaat cggtaggccg gatcaggcgt tacgccgcac
     8701 ccggcactag tccctctgca caaacgccac cttt
//
LOCUS       DAJVUP010000171         8726 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.171, whole genome shotgun sequence.
ACCESSION   DAJVUP010000171 DAJVUP010000000
VERSION     DAJVUP010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8726
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.171"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1217)
                     /gene="rhsC"
                     /locus_tag="OQQ75_003609"
     CDS             complement(<1..1217)
                     /gene="rhsC"
                     /locus_tag="OQQ75_003609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhs element protein RhsC"
                     /protein_id="HCS1977794.1"
                     /translation="MSGKPAARQGDMTQYGGSIVQGSAGVRIGTPTGVACSVCPGGVT
                     SGHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADI
                     RLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQ
                     ALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGR
                     TQTFHREAAGEFSGEITGVTDGAGRHFQLVLTTQAQRAEEARQQAISGGTEPSAFPDT
                     LPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAAVYDRSNTQVR
                     SFTYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDS
                     LNRREVLHTQGEAG"
     gene            1445..2053
                     /locus_tag="OQQ75_003610"
     CDS             1445..2053
                     /locus_tag="OQQ75_003610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HCS1977795.1"
                     /translation="MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFN
                     PLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMD
                     AGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
                     AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA"
     gene            2151..3542
                     /gene="selA"
                     /locus_tag="OQQ75_003611"
     CDS             2151..3542
                     /gene="selA"
                     /locus_tag="OQQ75_003611"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HCS1977796.1"
                     /translation="MTTETRSLYSQLPAIDRLLHDSSFLSLRDTYGHTRVVELLRQML
                     DEAREVIRDSQTLPAWCENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAE
                     AAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLM
                     LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNEN
                     TALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEP
                     MPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAAL
                     EATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLS
                     QIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRC
                     LEDEQRFLEMLLK"
     gene            3539..5383
                     /gene="selB"
                     /locus_tag="OQQ75_003612"
     CDS             3539..5383
                     /gene="selB"
                     /locus_tag="OQQ75_003612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HCS1977797.1"
                     /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY
                     WPQPDGRVPSFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT
                     GNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAEAKLFITAATEGRGIDALREH
                     LLQLPGREHASQHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRV
                     RALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQTHT
                     PLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVLRDISARNTLAG
                     ARVVMLNPPRRGKRKPEYLQWLASLARAQNDSEALAVHLQRGAVNLPDFAWARQLNGE
                     GMRELLQQPGYIQAGYSLLNAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMAL
                     PMEDEALVLLLIEKMRESGDILSHHGWLHLPDHKAGFSEEQQAIWQKAEPLFSDEPWW
                     VRDLAKETGTDEQAMRLTLSQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS
                     TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPEK"
     gene            5573..6724
                     /gene="yiaY"
                     /locus_tag="OQQ75_003613"
     CDS             5573..6724
                     /gene="yiaY"
                     /locus_tag="OQQ75_003613"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine dehydrogenase"
                     /protein_id="HCS1977798.1"
                     /translation="MASSTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDSMLTK
                     LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHD
                     CAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIK
                     MAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALK
                     AVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAYQLGGFYNLP
                     HGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKV
                     DIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVAIYRAAM"
     gene            6889..8427
                     /gene="aldB"
                     /locus_tag="OQQ75_003614"
     CDS             6889..8427
                     /gene="aldB"
                     /locus_tag="OQQ75_003614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase AldB"
                     /protein_id="HCS1977799.1"
                     /translation="MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQN
                     LTPVTGQLLCEVASSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLE
                     LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP
                     LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIVGDLLPPGV
                     VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI
                     FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI
                     RSGNPLDSVTQMGAQVSHGQLETILNYIDIGKKEGADVLTGGRRKLLEGELKDGYYLE
                     PTILFGQNNMRVFQEEIFGPVLAVTTFKTMEEALELANDTQYGLGAGVWSRNGNLAYK
                     MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP
                     LGLF"
BASE COUNT         1991 a         2263 c         2471 g         2001 t
ORIGIN      
        1 ccggcttcac cctgcgtgtg cagcacttca cggcggttca ggctgtcggt gatggtgatg
       61 cggtccttct catactgata cgtgtagctt aagcctgccg ggttaagctg ttctgtcacc
      121 cgcccgtcgc tgtcgtaacg gtaacggatt tccggccggc ccgtgtgacg gtgcgccacc
      181 atccggcccc ggtatttatc atcgtaagta aagctacgca cctgtgtatt gctgcggtca
      241 tacactgccg ccagttcgcc gcgcggcgtc cagccatagc gcaccagcgg cgcggcaggt
      301 aaattctccg ggtattccgg gtcgtgcgtc agccacacgg cagacagacg gatgccgttg
      361 tcccggccat attcggtgta acccggcagg gtatcaggaa aagcggacgg ttccgtcccg
      421 ccggaaatgg cctgctgccg ggcttcttct gcccgctgcg cctgcgtggt cagtaccagt
      481 tggaagtgac gcccggcacc atccgtcacg ccggtgattt cgccgctgaa ttcaccggcg
      541 gcttcgcggt ggaacgtctg tgtgcgcccg aagcggtcca ccagcccggt cagtacccgg
      601 tacggcggca gcggcgcagg cagcacctca tccgcttccg gcacccgctc acaccagccg
      661 agcagccacc acggcccctg cggactgttt gtcgccagat aacgatgcgg acttaagcgg
      721 agttcttccg gcagcgcctg ccagagtgcg gccagccggt gaccttcatc cagtttcgcc
      781 acgccgccgc gcaccagcca cagtgactcg ctgcggctgt aaccgtcctc accgggaaac
      841 aggtgctcaa aatacaggct tctgccgccg ttatcactga gtatcagtgt gttatcgcgc
      901 agctgtaagc ggatatccgc aggcattttc cagccggggc cgaggctccc caccggcgcg
      961 ggcgtttttg tccggtaact gctgtaggtg cgggagagga tgaacggcag cgggccgggc
     1021 agggcgatgt cggtttcacc gggaaggacc tttgcaccga gcaggggatt gaccggatgg
     1081 ccggacgtca ctccgccggg gcacaccgaa caggccacgc cggtgggggt accaatgcgc
     1141 accccggctg aaccctgaac aatgctaccg ccatactgcg tcatgtcgcc ctgacgcgct
     1201 gccggttttc cgctcatttc tcatccttgt tttatcgggt tatttgtctg ctgacaggca
     1261 aaaccctaca gatttataag aaagcctgaa gtgagatatc catcagagtg aaataattag
     1321 gaaaatattt atatcaccat gataaatatg tgatttattt ggaagtaaca aaccatcaac
     1381 attttctgcc ctttttccca tcaccaggcc atactgatat ttttcctcgc acaaaggact
     1441 cggcatgaaa ctcgtcggta gctacaccag cccgtttgta cgcaaacttt ctattctgtt
     1501 gttagaaaag ggcataactt tcgaatttat taatgaactg ccctataacg cggacaacgg
     1561 cgtggcgcaa tttaacccgt taggaaaagt gccggtgctg gtgaccgaag agggcgaatg
     1621 ctggtttgat tcgccgatca tcgctgaata tattgagtta atgaatgtcg ctccggcgat
     1681 gttgccgcgc gatccgctgg agtcgttgcg ggtgcgcaaa attgaggcgc tggcggatgg
     1741 cattatggat gccgggctgg tatcggtgcg tgaacaggcg cgtccggcgg cgcagcagtc
     1801 tgaagatgaa ttgttacgcc agcgggagaa aatcaaccgc agtctggatg tgctggaagg
     1861 atatctggtc gatggcacac tcaaaaccga tacggtcaat ctggcgacta tcgccattgc
     1921 ctgtgctgtc ggatatctca atttccgccg cgttgcgcca ggttggtgtg tcgaccgccc
     1981 acacttagtc aaactggtcg aaaacctgtt tagccgcgaa agttttgctc gcaccgaacc
     2041 gccaaaggct tgatgcgcga tatgtcctcc tgacccatct cacgttacaa tccgtggtta
     2101 tgttaaacgc ccttctccat gtgagagggc cttgattagc taggtttcct atgacaaccg
     2161 aaacgcgttc cctctatagt caacttccgg ctattgatcg cttattgcac gatagctcct
     2221 tcctttcttt gcgtgatact tatggtcaca cccgcgtggt ggaattgttg cgtcagatgc
     2281 tcgacgaagc gcgagaagtg attcgtgaca gccagacgct tcctgcgtgg tgtgaaaact
     2341 gggcgcaaga agtcgatgcc cggttgacga aagaggcgca gagcgcgctg cgtccggtga
     2401 tcaacctgac gggaaccgtg ctgcatacca accttggacg agctttacag gcggaagccg
     2461 cggtggaagc cgttgcgcag gctatgcgtt cgccagtgac cctcgagtac gatctggacg
     2521 acgctggacg cggacatcgc gatcgggcgc tggcgcaact gctgtgccgt attacggggg
     2581 cggaagatgc ctgtatcgtc aataacaatg cggcggcggt gttattgatg ttggcggcca
     2641 ctgccagcgg gaaagaggtg gtagtatctc gcggcgaatt ggtggagatt ggcggcgcgt
     2701 ttcgtattcc cgatgttatg cgtcaggcag gctgcaccct acacgaagta gggaccacca
     2761 accgcacgca cgcgaatgat tatcgtcagg cggtgaatga aaataccgca ctgttgatga
     2821 aagtacatac cagtaactac agcattcagg ggttcaccaa agcgatagat gaagcggaac
     2881 tggtggcgct cggcaaagag ctggatgttc ccgtagtgac tgatttaggc agtggctcgc
     2941 tggtcgatct tagccagtac ggtttgccga aagagccaat gccgcaggag ttgattgcgg
     3001 cgggcgtcag tctggtgagc ttctccggcg acaagttgtt aggcgggccg caggcaggga
     3061 ttatcgttgg taaaaaagag atgatcgccc gcctgcaaag ccacccgctg aagcgtgcat
     3121 tacgcgcgga taaaatgacc ctcgcggcgc tggaagccac gttgcgtctt tatttacacc
     3181 ctgaagctct gagtgaaaaa ttaccgaccc tgcgcctgct tacccgcagc gcagaggtca
     3241 ttcaaatcca ggcacaacgt ttacaggctc cccttgccgc acattacggc gcggagtttg
     3301 cggtacaggt tatgccatgt ctttcgcaga ttggcagtgg ttcgctgccg gttgatcgcc
     3361 tgccgagcgc ggcattaacg tttacacccc atgatggacg cggtagccac cttgagtcat
     3421 tagccgcccg ctggcgtgaa ttgccagtgc cggtgattgg tcgtatttat gacggacgat
     3481 tgtggctgga tttacgctgc cttgaagatg agcaacggtt tttggagatg ttgttgaaat
     3541 gattattgcg actgccggac acgttgacca cggcaaaaca accttattgc aggcgattac
     3601 tggcgtaaat gctgaccgtc tgccggaaga aaaaaagcgc ggcatgacca tcgatctcgg
     3661 ctatgcctac tggccgcagc cggatggtcg cgtgcctagt tttatcgacg tacccggtca
     3721 tgaaaagttt ctttccaaca tgctggcggg cgttggtggt atcgatcacg cgctgttggt
     3781 ggtggcgtgc gatgacggcg tgatggcgca gacccgtgag catctggcga ttttgcagct
     3841 gaccggtaac ccgatgctga cagtggcgct gaccaaggcc gatcgcgtgg acgaagcgcg
     3901 tgttgatgag gttgaacgcc aggtaaagga ggtgctgcgg gaatacggtt ttgctgaggc
     3961 aaaactgttt atcaccgcag caaccgaagg tcggggaatt gatgccctgc gcgagcatct
     4021 gcttcagtta ccaggacgtg aacacgccag ccaacatagt ttccgcctcg cgatcgaccg
     4081 cgcatttacc gtaaaaggtg ccgggctggt cgtcaccggt acggcgttaa gcggggaagt
     4141 gaaggtaggc gattcactct ggctgactgg tgtaaataaa ccgatgcgtg tacgtgcgct
     4201 gcatgcacaa aaccagccaa cagaaaccgc ccatgccggg cagcgtatcg cgcttaacat
     4261 cgcgggtgat gcggaaaaag agcagattaa ccgtggcgac tggctgcttg ccgatgcgcc
     4321 gccagagccg ttcacacggg tgattgtcga gcttcaaacc catacaccgc tgacccagtg
     4381 gcagccgctg catattcacc acgccgccag ccacgtcacg ggacgcgttt cactgctgga
     4441 agataacctt gctgaactgg tcttcgacac cccgttatgg ctggcagata acgaccgcct
     4501 ggtattgcgc gatatctctg cccgcaacac gctggccgga gcgcgcgtcg tgatgcttaa
     4561 cccgccgcgt cgcggtaaac gtaaaccaga gtatctgcaa tggctggctt ccctcgccag
     4621 ggcacagaat gatagcgaag cgttagccgt tcacctgcaa cgcggcgcgg ttaatcttcc
     4681 tgatttcgcc tgggcgcgcc agctcaacgg cgaagggatg cgcgaactgc tgcaacagcc
     4741 tggctatatt caggctggtt atagcttgtt gaatgcgccg gttgccgctc gctggcaacg
     4801 gaaaattctc gacacattag cgacttatca tgagcaacat cgcgatgaac ctgggcctgg
     4861 gcgcgaacgt ctgcgacgta tggcgttgcc aatggaagat gaagcgctag tactgttgct
     4921 gattgaaaag atgcgcgaaa gcggcgacat cctcagtcat cacggttggc tgcatctgcc
     4981 ggatcacaaa gcgggcttca gcgaagagca gcaggccatc tggcaaaaag cagagccgct
     5041 gtttagtgac gagccgtggt gggtgcgtga tctggcaaaa gagacgggta ccgacgagca
     5101 ggcaatgcgc ttgacgctaa gccaggcggc gcagcaagga ataattaccg cgatcgtcaa
     5161 agatcgttat taccgtaacg atcggattgt cgaatttgcc aatatgatcc gcgatctcga
     5221 tcaggagtgt ggttcaacct gcgcggcgga tttccgcgat cgcttaggcg taggccgaaa
     5281 gctggcaatt cagattctgg aatattttga ccgcattggc tttacgcgtc gtcgtggaaa
     5341 tgatcattta ttgcgcgacg cattattatt tccggaaaaa taaggaaatg attaattaat
     5401 ttttaaaata aattaataca aatttcttat gattttaaaa aaagcacatt gtttaatgaa
     5461 tacaatgtgc tttttattag attaattttg ataattaata ataatgatca tgttttcgaa
     5521 tgaaaatcct cagtaagctt cccacccttt tttacacttt caggagtgtg ttatggcatc
     5581 ttcaactttc tttattcctt ctgtgaatgt catcggcgct gattcattga ctgatgcaat
     5641 gaatatgatg gcagattatg gatttacccg taccttaatt gtcactgaca gtatgttaac
     5701 gaaattaggt atggcgggcg atgtgcaaaa agcactggaa gaacgcaata tttttagcgt
     5761 tatttatgat ggcacccaac ctaaccccac cacggaaaac gtcgccgcag gtttgaaatt
     5821 acttaaagag aataattgcg atagcgtgat ctccttaggc ggtggttctc cacacgactg
     5881 cgcaaaaggt attgcgctgg tggcagccaa tggcggcgat attcgcgatt acgaaggcgt
     5941 tgaccgctct gcaaaaccgc agctgccgat gatcgccatc aacaccactg cgggtacggc
     6001 ctctgaaatg acccgtttct gcatcatcac tgacgaagcg cgtcatatca aaatggcgat
     6061 tgttgataaa catgtcactc cgctgctttc tgtcaatgac tcctctctga tgattggtat
     6121 gccgaagtca ctgaccgccg caacgggtat ggatgcctta acgcacgcta tcgaagcata
     6181 tgtttctatt gccgccacgc cgatcactga cgcttgtgca ctgaaagccg tgaccatgat
     6241 tgccgaaaac ctgccgttag ccgttgaaga tggcagtaat gcgaaagcgc gtgaagcaat
     6301 ggcttatgcc cagttccttg ccggtatggc gttcaataat gcttctctgg gttatgttca
     6361 tgcgatggcg taccagctgg gcggtttcta caacctgcca cacggtgtat gtaacgccgt
     6421 tctgctgccc catgttcagg tattcaacag caaagtcgcc gctgcacgtc tgcgtgactg
     6481 tgccgctgca atgggcgtga acgtgacagg taaaaacgac gcggaaggtg ctgaagcctg
     6541 cattaacgcc atccgtgaac tggcgaagaa agtggatatc ccggcaggcc tacgcgacct
     6601 gaacgtgaaa gaagaagatt tcgcggttct ggcgactaat gccctgaaag atgcctgtgg
     6661 ttttactaac ccgatccagg caactcacga agaaattgtg gcgatttatc gcgcagcgat
     6721 gtaatcatca tttccacaac ggctggcaaa ttgtcagccg ctttttcaac tatctctgta
     6781 acccttgccc gtaaattcgt gatagccgtc gtaaagctgt taccgactgg cgaagatttc
     6841 gccagtcacg tctacccttg ttatacctca caccgcaagg agacgatcat gaccaataat
     6901 cccccttcag cacagattaa gcccggcgag tatggtttcc ccctcaagtt aaaagcccgc
     6961 tatgacaact ttattggcgg cgaatgggta gcccctgccg atggtgagta ttaccagaac
     7021 ctgacgccgg tgactgggca gctgctgtgc gaagtggcgt cttcgggcaa acgagacatc
     7081 gatctggcgc tagatgctgc gcacaaagtg aaagataaat gggcgcacac ctcggtgcag
     7141 gatcgcgcgg cgattctgtt taagattgcc gatcgaatgg aacaaaacct cgagctgtta
     7201 gcgacagctg aaacctggga taacggcaaa cccattcgcg aaaccagtgc tgccgacgtg
     7261 ccgctggcga ttgatcattt tcgctatttc gcctcgtgta ttcgggcgca ggaaggtggg
     7321 atcagtgaag ttgatagcga aaccgtggcc tatcatttcc atgaaccgtt aggcgtggtg
     7381 gggcagatta tcccgtggaa cttcccgctg ctgatggcga gctggaaaat ggctcccgcg
     7441 ctggcggcgg gcaactgtgt ggtgctgaaa cccgcacgtc ttaccccgct ttctgtactg
     7501 ctgctaatgg aaattgtcgg tgatttactg ccgccgggcg tggtgaacgt ggtcaatggc
     7561 gcaggtgggg aaattggcga atatctggcg acctcgaaac gcatcgccaa agtggcgttt
     7621 accggctcaa cggaagtggg ccaacaaatt atgcaatacg caacgcaaaa cattattccg
     7681 gtgacgctgg agttgggcgg taagtcgcca aatatcttct ttgctgatgt gatggatgaa
     7741 gaagatgcct ttttcgataa agcgctggaa ggctttgcac tgtttgcctt taaccagggc
     7801 gaagtttgca cctgtccgag tcgtgcttta gtgcaggaat ctatctacga acgctttatg
     7861 gaacgcgcca tccgccgtgt cgaaagcatt cgtagcggta acccgctcga cagcgtgacg
     7921 caaatgggcg cgcaggtttc tcacgggcaa ctggaaacca tcctcaacta cattgatatc
     7981 ggtaaaaaag agggcgctga cgtgctcaca ggcgggcggc gcaagctgct ggaaggtgaa
     8041 ctgaaagacg gctactacct cgaaccgacg attctgtttg gtcagaacaa tatgcgggtg
     8101 ttccaggagg agatttttgg cccggtgctg gcggtgacca ccttcaaaac gatggaagaa
     8161 gcgctggagc tggcgaacga tacgcaatat ggcctgggcg cgggcgtctg gagccgcaac
     8221 ggtaatctgg cctataagat ggggcgcggc atacaggctg ggcgcgtgtg gaccaactgt
     8281 tatcacgctt acccggcaca tgcggcgttt ggtggctaca aacaatcagg tatcggtcgc
     8341 gaaacccaca agatgatgct ggagcattac cagcaaacca agtgcctgct ggtgagctac
     8401 tcggataaac cgttggggct gttctgatat aagaagctgg tcgcattggg tattcattgc
     8461 ctgatgtgac gcttacgcgt cttatcatgc ctacgggaac ctgaccgtag gccggataag
     8521 gcgtacacgc cgcatccggc ataaacaaag cgcacgttgt tacaatttac gttttaaacc
     8581 tacgtgcgca ataatccaga ctacgccaac agaagtgcgt ttctggggcg tgttttgtca
     8641 ggagtttaat ctcgcgtttc gatggtgagc gggcgaacta ggccgtaaat caccattggt
     8701 gatccgaggc caatcagcaa taaacg
//
LOCUS       DAJVUP010000172         8599 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.172, whole genome shotgun sequence.
ACCESSION   DAJVUP010000172 DAJVUP010000000
VERSION     DAJVUP010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8599
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.172"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..184
                     /locus_tag="OQQ75_003615"
     CDS             <1..184
                     /locus_tag="OQQ75_003615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312842.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HCS1977800.1"
                     /translation="EAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQ
                     KGEVVGVDDQCKEHKE"
     gene            403..645
                     /locus_tag="OQQ75_003616"
     CDS             403..645
                     /locus_tag="OQQ75_003616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709694.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977801.1"
                     /translation="MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD
                     QYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW"
     gene            complement(975..1904)
                     /gene="fdhE"
                     /locus_tag="OQQ75_003617"
     CDS             complement(975..1904)
                     /gene="fdhE"
                     /locus_tag="OQQ75_003617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HCS1977802.1"
                     /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLREL
                     AENNPLDDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKH
                     WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFI
                     WAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC
                     ETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAV
                     ADDLASLVLDARMEQEGYARSSINPFLFPGEGE"
     gene            complement(1901..2536)
                     /gene="fdoI"
                     /locus_tag="OQQ75_003618"
     CDS             complement(1901..2536)
                     /gene="fdoI"
                     /locus_tag="OQQ75_003618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1977803.1"
                     /translation="MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLM
                     QIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVG
                     DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL
                     IVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE"
     gene            complement(2533..3435)
                     /gene="fdoH"
                     /locus_tag="OQQ75_003619"
     CDS             complement(2533..3435)
                     /gene="fdoH"
                     /locus_tag="OQQ75_003619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase O subunit beta"
                     /protein_id="HCS1977804.1"
                     /translation="MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKA
                     CQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMH
                     CSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKC
                     TLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAG
                     VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHY
                     VGVGPNRADEEENNLHEEKDEERK"
     gene            complement(3448..6498)
                     /gene="fdnG"
                     /locus_tag="OQQ75_003620"
     CDS             complement(3448..6498)
                     /gene="fdnG"
                     /locus_tag="OQQ75_003620"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5911..5913),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS1977805.1"
                     /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTR
                     ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFI
                     HSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLS
                     TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVANYYAPIR
                     SGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYD
                     KSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE
                     YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSM
                     MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNK
                     NKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENG
                     SIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNY
                     AIPHEPKSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIF
                     AGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL
                     LKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFET
                     PLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI
                     LQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIG
                     IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV"
     gene            6692..7525
                     /gene="fdhD"
                     /locus_tag="OQQ75_003621"
     CDS             6692..7525
                     /gene="fdhD"
                     /locus_tag="OQQ75_003621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HCS1977806.1"
                     /translation="MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVA
                     LVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSS
                     RRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
                     QPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSS
                     RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLS
                     N"
     gene            7679..>8599
                     /locus_tag="OQQ75_003622"
     CDS             7679..>8599
                     /locus_tag="OQQ75_003622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HCS1977807.1"
                     /translation="MKRNLLSSAIIVAIMALGLTGCDDKKAETETPPPANSQPAAPAP
                     EAPVAKAEAKPETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYVDWLKDFK
                     QGPTGEERTVYGIYGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNT
                     INEMDKYYTQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAEL
                     KNIEEREGKIFHYYSLAVMISAKQINNLISQEKFDVDAAMKKVSELETLVAQAKEADK
                     GGMNFSFINSAGQYQLEAKKYVRRIRDKVPY"
BASE COUNT         2049 a         2176 c         2275 g         2099 t
ORIGIN      
        1 agaggcaatt aaacggctga acaagcttcg gggctggcgt aaggtttcac gatctgcaat
       61 tttacgcgaa gcggttgagc aatatctgga gcggcagcaa tttccggtgc gtaaagcaaa
      121 gggaggcagg caaaaggggg aggtagttgg tgttgatgat cagtgtaagg agcataagga
      181 atgaaaaaaa tttttcattc ttgaatataa aaaaacagat gcccttattc tggtattaat
      241 acaaggctgt tttacttgaa cttataataa ctgcaactgt tacatcgtat ctggaaaacg
      301 cctcgcaaaa ataaaaaatg atgcgtaaat gagctttctt taaagattcg gcaagggtac
      361 ttttctctcc atagattcaa aaatgatatt ggcgagatat ttatgaactc tctggcaggt
      421 atagatatgg gcagaatttt actcgattta tcgaatgagg tgattaagca acttgatgat
      481 ctcgaggtgc agcgtaatct tcctcgtgcg gacctattaa gggaagcggt agatcaatac
      541 ctgataaatc aatcgcaaac agcaagaacc agtgttcctg gcatctggca agggtgtgag
      601 gaagatggtg tcgaatatca gcgtaagctg cgcgaggaat ggtaatggga aaaaatgatg
      661 tcaatcagat tgctgacaac gtgcgcgttg ttcatgccgg atgcggcgtg aacgccttat
      721 ccggcctaca aagtcatgca aattcaatat attgaagttt attggtaggc ctgataagcg
      781 cagcgcatca ggcaatcata cgcttgtcat cagtgacata cccataacct tatcgatgtg
      841 ttggagggaa gaacgaggca aacagacaat tgcggcatga tcttgaatgg gtaacgcgga
      901 atacgagaga tggtgtcgtc acaccctatg agctgtaatc cgggcgacca gcgccacccg
      961 gaaaacgtca gagattactc cccttcaccc ggaaacagga acgggttgat ggaactgcgg
     1021 gcatagcctt cttgctccat tcgcgcgtcc agtaccagag aagcgaggtc atctgccacg
     1081 gcttcaactt tcggttcttt ttcctgataa agaatcttca ggtaagtgcc gcagtcatcg
     1141 cagctttcgg ctttaatcgc ggcctgttcg tcatccagcg accagtaatg cagtttgccg
     1201 ctctgttcac agttgctgca ttttacgcgc actacgtgcc attcggtttc acacaggttg
     1261 cagtgcaggt aacgcagacc ctgagtggtg ccaatttgca ccatgctgga caccggcata
     1321 gaaccacaaa ccgggcaata ttgacgttgc tcgccgtatt cagcgcgggc tttgccgggg
     1381 atcagattgg ccatctgcgc ccagtagagc gacagtgcag cccagataaa cggcgcttta
     1441 tcgctgctga cggatgagaa atcagaggca aacagtgcgc tggccatatc ttccagctcc
     1501 tgagtcgatg ccttctccag attctcaatc actgccagcg ccgggccgct catttcaggt
     1561 ttcagctcag caatcagcgc catcagcagc ttttgccagt gcttatcacg cggcagaacg
     1621 tgaatatcca gcgggggctt gccctgtgcg ctggcttctt taatgcgcgc ggtcagatcc
     1681 atctccagcg gatggtcgta cagcaccact tcctgggcgt gggcgataag cgcagcaaag
     1741 cgcaggtaat catccagcgg attattttct gccagctcgc gcagacgctc ggcgcggcgg
     1801 ttgtataaat tcttgagccg agggaacaat aacggcggaa tcatatccgc cgtacgtttc
     1861 tcgctcgaac ccagctcatc ttgcgggatt atgcgaatac tcattcagct ttcttttccg
     1921 ttgtcttgcg gacctcacgg taccagcgcg ggtgatgttt cttcgcccag gcgctggtaa
     1981 cccatccttc caccatggcg gtaatcgtgc ctttcaccca aagggcggcg tagatatgca
     2041 ccatgataac cacaattaac gccactgcgg caaatgaatg cagcattaac gcgaatcgga
     2101 tcaccgggat tgagaaagca ggcgcaaaat aaggacgcca gataatcacg ccgctcacca
     2161 gcagcagaac caggaaaata atcgccgccc agaaaacgca tttctgaccg aagttataac
     2221 gcccggtgtc acctacttcc tcgttgacga cgatcttacg aatattcttc gcccaaaaga
     2281 tatcatcccg attgattagg ttgtgatgcc agtaacggaa aaacatgatg atgaacgagg
     2341 caaacataac cacgccgaca aacgggtgca gaattcgcgc cagctgcggt gtgcccatga
     2401 tttgcatcaa ccagttgaag gacgggaaca aaaagcccag cccgctcacc gccgctagga
     2461 tgaagcagaa ggcggtgatc cagtggttga tacgttccgg cgcggtgtag cgcacgatgg
     2521 tgtcacgtcg tttcatttgc gctcctcgtc tttctcttcg tgcagattat tctcttcctc
     2581 atccgcacgg ttcggaccga cacccacgta gtggaagata ctggctgcga aggtagccgc
     2641 aaagccaaca gctgcgagcg gtttccagat gcctttccag aatttcacgg tttcgctgat
     2701 ttccgggttc tccggcaagc catgatacag atttggcttg tcagcatggt gcagcacgta
     2761 cataacgtgt gtaccaccga cgcctgccgg atcgtacagg cccgcattgt cgtaaccgcg
     2821 ggttttcagc tccgccacgc gctcgctcgc cagcgttttc atcgactctt tcgtaccgaa
     2881 gtgaatcgcg cccgttgggc aggtcttcac gcaggctggt tcttgcccaa ccaccacgcg
     2941 gtcaacgcac agcgtacatt tgtagacgcg gttgtcttcc gggttgaggc gcggaatgtc
     3001 gaacggacag cccgcaatgc aataaccgca gccaatgcac tgctcggact ggaagtcgac
     3061 gataccgttg gcatactgaa taattgcacc ttccgccggg cacgctttca gacagcctgg
     3121 atcggaacag tgcatacagc cgtctttgcg gatcagccat tccagtttgt cgttctgctc
     3181 cacttccgag aagcgcatca ccgtccacga tttggcactt aaatcattgg ggttgtcgta
     3241 caccccaatg ttattgccga cggtatcgcg aatgtcgttc cactctgaac acgccacctg
     3301 acaggcttta cagccgatac aggtggtgac gtcgatgagt ttcgccactt cttcctggaa
     3361 gtcccgcgcc tgaggcgcgg gggtcagacc gttagtcgcg gaacgacgaa tgatatcttg
     3421 agattgataa gccatatgtc gtctccgtta caccttttcc acattcacaa ggaaggactt
     3481 aaactccggc gtctgcgtgt tcgcatcacc aacgaatggc gttaaagtat tggcaataaa
     3541 gcctttttta gctacgcctt catagcccca gtgaatcgga ataccgatgg tatcgatatc
     3601 tttgccgttc gctttcagcg tgcgaatacg tttggtcacc accgctttgg ctttgatata
     3661 gccacggttg gaggagactt tcacggtatc gccctgggca atgccaagtt tattcgccag
     3721 cgactccccg atttccacaa actgctctgg ctgcaaaatc gcgttcaaca gcgcgtgttt
     3781 ggtccagtag tggaagtgct cggtcagacg ataggtggtt ccgacatacg ggaacttatc
     3841 ggctttaccc aatgcttcgg cgtcgtcttt aaagatacgt gcagccgggt tcgagataac
     3901 gtttggatgc agcgggttag ttcccagcgg cgtttcaaac ggctcgtagt gttccgggaa
     3961 cggaccttcc gccatcttat cgagggcaaa cagacgcccc atgccttcct gctgcatgat
     4021 aaacggcccg acgccgctac ccggaggcgc tgcgctgtag tccggaatat cccagccggt
     4081 ccacttagtg ccgtcccatt tcagcaactg acgcttcgga tcccacgggt taccctgcgg
     4141 atctgcggag gcgcggttat acagaatgcg gcggttaagc ggccatgccc atgcccagcc
     4201 cagcgtgtta ccgaggccag acggatcggc gttatcacga cgcgccatct ggttgccttc
     4261 cggcgtccag ctaccggcga aaatccagca gccacaggag gttgtaccgt catcgcgcaa
     4321 ttgggcgaac gagctaagtt gttggccttt cttgacgata accgcaccgg ttgccggatc
     4381 ggtaatatcg gccagcgcct taccgttgct ctccatcgct acttcttccg acttcggctc
     4441 atgcggaatg gcgtagttcc aggtcatgtt cagcacctga tccgggttcg cgccaccctg
     4501 ttcggcatac atcttgcgca agcgcaggaa gataccggag aggatctcac cgtcagtcag
     4561 cgcaatcccc ggggcgtccg cacctttcca gtgccactgc aaccagcgac ctgagttaac
     4621 gattgaaccg ttctcttctg cgaagcaggt cgatggcaga cggaacactt cggtctggat
     4681 cttcgacgag tcaacttcgt tcagctcacc gtggttctgc cagaagttag aggtttcagt
     4741 gttcagcggg tcgatggtga cgaggaactt cagtttcgac agacaaccga tcactttgtt
     4801 tttgttcggg aatgaggcaa cagggttaaa accctggcag atatagccat tgaccttgcc
     4861 ctctttcatc atctcgaagt attgcaggac gtcgtagcct ttatcccact tcggcaacca
     4921 gtcaaagccc cagctatttt ccgccgtcgc tttatcacca aagaaggcct tcatcataga
     4981 gacgaagaat ttcgggtagt tgccccagta gtttacctgg ccttccagca gcggttttgg
     5041 cgtgttggcg gtaaggtagg tttgcagatc ggtctgcttc tcgcttggca gcgtcatgta
     5101 acctggcagg ctctgcgaca gcagccccag gtccgtcagc ccctgaatat tggagtgacc
     5161 gcgcagggcg ttaacgccgc cgcctgccat ccccatattg ccgagcagca gctggatcat
     5221 cgccatcgta cgaatgtttt gcgcaccaac ggagtgttgc gtccagccga gggcatacag
     5281 gaacgaggca gttttatcgt gagcactggt ttctgcgatg tattcgcaga ctttcaggaa
     5341 cgcgtctttt ggcgtaccac agatgttttc aaccacatct ggcgtgtagc gggaaacgtg
     5401 ctgtttcagc aagttccaca cgcagcgcgg atgttgcagc gtggtatcgc gtttggcgaa
     5461 gccgttttcg tccagttcgt aagtccagga ggatttatcg tacttgcgtt tttccgcgtc
     5521 atagccggtg aaaaggccat cttcaaagcc gtaatcctca cgcacgatca ggctggcgtt
     5581 ggtataggct tcggtgtatt cgcggttgaa tttttcattg ttcagcaggt acagcaatac
     5641 gcctgacagg aaagcaatgt cagtaccgga acgaataggg gcatagtagt tagctaccgc
     5701 cgccgtacgc gtaaagcgag gatcgatcac aatcagcttc gcgccgttgt gaattttggc
     5761 ttccatcgcc cagcggaacc cgaccgggtg agcttcagcg gcgttaccgc ccatcaccac
     5821 gacgaggttg gcgttcttga tgtcgaccca gtggttggtc atcgcaccgc gaccaaatgt
     5881 tggagcaaga cttgctaccg ttggtccgtg tcagacacgc gcctggttgt cgaccgcgag
     5941 catacccagc gcgcgggaga atttttgcgt taaatagccg gtttcgttac tcgacgcgga
     6001 agcacacagc atcccggtgg agagccagcg gttaacagtc acgccttcgg cgttttgcgc
     6061 aatgtagtta gcatcgcggt cttctttcat cagtttggcg atgcgatcaa acgcctcttc
     6121 ccaactgatt tgctgccatt tatcagaacc tggcgcacgg tattccggaa acttcagacg
     6181 gctttcggag tggatgaaat ccaccaggcc agcgcctttc ggacaaagtg caccgcggtt
     6241 gaccgggtga tccggatcgc cttcgatatg gaagatagat gctttggcgt tttttgctcc
     6301 gtcaccgagg ctgtacatca acagcccaca gcctacggaa caataggtgc aggtattacg
     6361 ggtttcgcgg gtgcgcagca gtttatactg ccgggtttcc gcgagtgcta cgctgggtgc
     6421 aaaacctagt gccgctgccg tggtgcctgc cataccgcca gcgcagatct taaagaactg
     6481 ccttctgctg acctgcatgg attgctcctt gtttcgacat tgtcacgtcc catttacatt
     6541 cgcttgctgc gtgtgcaggg agtgggagtt atttttcttt gcggaagggg ccgcaaaggt
     6601 ccagaattgg ctcgatttcc ctccatccag gaagggtttg taacagaata ccataatgtt
     6661 ggtgtgtgtg ttcttatctg gttaagagaa agtgaaaaaa acacagcgaa aagaaatcga
     6721 aaatgtgaca aatatcacag gtgttcgtca aattgagtta tggcggcgtg atgatttaca
     6781 acacccacgg ttagatgagg tcgcggaaga agttcccgtt gcgctggtct acaacggcat
     6841 ttcgcatgtg gtgatgatgg cgtcgcccaa agaccttgag tactttgcgc tcggtttttc
     6901 gctttccgag gggattatcg aaagtccgcg cgatatcttc ggcatggatg tcgttccttc
     6961 ctgtaatggt cttgaagtac aaattgagct ttccagccgc cgctttatgg ggttgaagga
     7021 gcgccgccgg gcgctggcgg gacgtacggg ctgtggcgta tgcggcgtgg agcaacttaa
     7081 tgacatcgga aaaccggtgc agccgctacc gttcacccag acgtttgatc tcaacaaact
     7141 ggatgatgca ttacgtcatc tcaacgattt tcagccagtg gggcaactga ctggttgtac
     7201 tcacgccgct gcctggatgt tgccatctgg cgaactggtc ggcgggcatg aagacgtggg
     7261 gcgccatgtg gcgctggaca aactgttagg ccgccggtca caagaagggg aaagctggca
     7321 gcaaggtgcg gtactggttt ccagtcgtgc cagttatgaa atggtgcaaa agtcggcgat
     7381 gtgcggcgta gagattttgt ttgcggtgtc tgccgcgacc acgcttgctg tagaagtggc
     7441 tgagcgctgt aatctgacac tggtaggttt ttgtaaaccg ggtcgggcaa cggtttatac
     7501 ccatccgcag cgtttgagca attaattaaa ataagtcctg cgatatatat taaattgcag
     7561 gacttattca tttcgtgaat tttattattt ttatttataa ataaaacgcg tgtagtggcg
     7621 ttttcttttt tcatttatta tgttcactct cttatctata tatttataag gcaattaaat
     7681 gaaaaggaat ttattatctt ccgctattat agtcgccatc atggccctcg gtctgacggg
     7741 ttgtgatgat aaaaaagccg aaacagaaac gcccccgcct gccaatagtc aacctgccgc
     7801 accagctcct gaagctcccg ttgcaaaagc agaagctaaa cctgaaacac ctgcgcaacc
     7861 ggtggtcgat gaacaagcgg ttttcgacga aaaaatggat gtctatatca agtgctataa
     7921 caagttacag atccctgtac agcgcagtct ggcgcgttat gttgactggc tgaaagattt
     7981 taaacagggg cctaccggtg aagagcgtac tgtttatggc atctacggca ttagtgaatc
     8041 caacctcgct gagtgtgaaa aaggcgtaaa aagtgctgtg gcgttaacgc ctgcgctgca
     8101 accaattgat ggcgtggcgg tgagttatat cgatgctgcc gtggcgttgg gtaataccat
     8161 taacgaaatg gataaatatt acacccagga aaattataaa gacgatgcgt ttgcgaaagg
     8221 gaaaacgctg caccagacat tcttaaaaaa tctggaagcc tttgaacctg tagcagaatc
     8281 ttatcatgcg gcgattcagg aaattaacga taagcgccag cttgcggaac tgaaaaatat
     8341 tgaagaaaga gaagggaaaa tattccacta ctattctctg gcagtcatga tttcagcgaa
     8401 acaaattaat aacctgatat cgcaagagaa gtttgatgtt gatgcggcaa tgaagaaagt
     8461 gtctgaactg gaaacgctgg tggcgcaggc caaagaagcg gataaaggcg gcatgaattt
     8521 ctcgtttatt aattcggcag gccagtatca actcgaggct aaaaaatacg ttcgccgcat
     8581 cagagataaa gtcccgtac
//
LOCUS       DAJVUP010000173         8454 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.173, whole genome shotgun sequence.
ACCESSION   DAJVUP010000173 DAJVUP010000000
VERSION     DAJVUP010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8454
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.173"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..200
                     /gene="csgC"
                     /locus_tag="OQQ75_003623"
     CDS             <1..200
                     /gene="csgC"
                     /locus_tag="OQQ75_003623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706954.2"
                     /note="involved in autoagglutination of curliated cells;
                     not involved in production of curli fibers; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HCS1977808.1"
                     /translation="LREGGSGQSQTKQEKTLSLPANQPIALTKLSLNISPEDRVKIVV
                     TVSDGQALHLSQQWPPSSEKS"
     gene            321..632
                     /locus_tag="OQQ75_003624"
     CDS             321..632
                     /locus_tag="OQQ75_003624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1977809.1"
                     /translation="MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDV
                     STQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEY
                     N"
     gene            728..1261
                     /gene="ymdB"
                     /locus_tag="OQQ75_003625"
     CDS             728..1261
                     /gene="ymdB"
                     /locus_tag="OQQ75_003625"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HCS1977810.1"
                     /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP
                     ALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYL
                     NSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD
                     EENAHLYERLLTQQGDE"
     gene            1203..2684
                     /gene="clsC"
                     /locus_tag="OQQ75_003626"
     CDS             1203..2684
                     /gene="clsC"
                     /locus_tag="OQQ75_003626"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsC"
                     /protein_id="HCS1977811.1"
                     /translation="MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPL
                     EKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDN
                     NTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
                     TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDV
                     PEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVDGTLPLIWAKTRLLSDDPAK
                     GEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTN
                     SLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKT
                     FSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDR
                     WGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL"
     gene            complement(2692..3849)
                     /gene="mdoC"
                     /locus_tag="OQQ75_003627"
     CDS             complement(2692..3849)
                     /gene="mdoC"
                     /locus_tag="OQQ75_003627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706958.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoC"
                     /protein_id="HCS1977812.1"
                     /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEP
                     SLWLTLFNDFIHSFRMLVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL
                     TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI
                     RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL
                     FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES
                     VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI
                     TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR"
     gene            4243..5778
                     /gene="mdoG"
                     /locus_tag="OQQ75_003628"
     CDS             4243..5778
                     /gene="mdoG"
                     /locus_tag="OQQ75_003628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoG"
                     /protein_id="HCS1977813.1"
                     /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPK
                     SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA
                     VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI
                     GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY
                     KFVVMPGRDTVVDVQSKIYLRDKVGKLGGAPLTSMFLFGPNQPSPANNYRPELHDSNG
                     LSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPS
                     AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED
                     KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS
                     IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP
                     ANE"
     gene            5771..8314
                     /gene="mdoH"
                     /locus_tag="OQQ75_003629"
     CDS             5771..8314
                     /gene="mdoH"
                     /locus_tag="OQQ75_003629"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HCS1977814.1"
                     /translation="MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWARED
                     DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF
                     WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL
                     PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ
                     LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK
                     HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR
                     WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA
                     TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF
                     VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP
                     VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL
                     AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF
                     HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF
                     WLAPIVFSLILSPFVSVISSRATVGLRTKHWKLFLIPEEYSPPQVLVDTDRFLEMNRQ
                     RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR
                     LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ"
BASE COUNT         2133 a         2005 c         2212 g         2104 t
ORIGIN      
        1 ccctgcgcga aggcggttca gggcaaagtc agacgaagca agaaaagacc ctctcattgc
       61 ctgctaatca acctattgct ttgacgaagt tgagtttaaa tatttccccg gaagatcggg
      121 tgaaaatagt tgttactgtt tctgatggac aggcacttca tttatcacaa caatggccgc
      181 cctcttcaga aaagtcttaa tttgttgaaa tgtcgagcat aagatgaatc tggagagaat
      241 ggtctgctgc gaatcagcca acctgaaagt atggataaca caaccctcaa ggatgactaa
      301 tcattgagga aatagaataa atgttcagac cttttttaaa ctctcttatg ctcggcagtt
      361 tgttttttcc ttttattgcc atcgcaggaa gcaccgcgca agggggcgtg atccattttt
      421 atggccaaat tgtggaaccg gcatgtgacg tcagcaccca gtcatcaccc gtagaaatga
      481 actgcccaca gaatggttct gttccgggaa aaacctattc cagcaaagcg ttaatgagcg
      541 gcaatgtcaa aaacgcgcaa gtagcctcag taaaagtgca gtatattgat aaacagaaaa
      601 agctggctgt aatgaacatc gaatataact aagtttctga acaacgcacg ttgctgagta
      661 gaaaaatgcg atttaaccaa aaagcctgct gtacacttaa gaaacaagaa ggtgttaagg
      721 aggcgttatg aaaacgcgta ttcatgttgt gcagggtgat attaccaaac tggccgttga
      781 tgtgattgtg aatgcggcta atccgtcatt aatgggaggc ggcggcgtcg atggggccat
      841 tcatcgcgca gcgggtccgg ccctgctgga tgcctgttta aaagtcaggc aacagcaggg
      901 cgattgccct acggggcatg ccgttattac gcttgcaggc gatcttcccg ctaaagccgt
      961 agtacacacc gtcgggccag tctggcgtgg tggtgaacaa aacgaagacc agcttttgca
     1021 ggatgcctat ctcaatagtc tgcgactggt ggcggcaaac agctatacgt cagtggcatt
     1081 tcctgcaatc agtactgggg tttatggtta ccctcgtgcg gcagcggctg aaatcgcagt
     1141 aaaaaccgtt tcagaattta ttacccgtca cgctttaccc gaacaggtat actttgtctg
     1201 ttatgatgaa gaaaacgccc acctctacga aagactcctt acccaacaag gagatgaatg
     1261 atttgccccg gctggcgagc gcggtgctgc cactgtgttc gcaacatccc ggtcagtgtg
     1321 gtcttttccc tctggagaaa agtctggatg cgtttgccgc ccggtatcgt ctggccgaaa
     1381 tggcagagca tacgctggat gttcagtatt acatctggca ggacgatatg tcgggtcggt
     1441 tactgttttc cgccctgtta gccgcagcaa agcgtggcgt tcgcgtccgt ttgttgctgg
     1501 acgacaacaa tacgcccgga cttgacgata ttttacgctt gcttgacagc catccccgca
     1561 ttgaagtccg gctttttaat cctttctcgt ttcgcttgct gcgtccgctt ggttatatca
     1621 ccgacttttc ccgtctcaat cgccgtatgc acaataaaag tttcactgtc gatggcgtgg
     1681 ttaccttggt gggaggacga aatattggtg atgcctattt tggggcaggg gaagagccac
     1741 ttttttcgga tttagatgtt atggcaatag gacccgtggt agaggacgtt gccgatgatt
     1801 tcgcccgcta ctggtattgc aaatcggttt cacccttaca gcaggtgctg gatgtcccgg
     1861 aaggtgaaat ggcggatcgc atcgagttac ccgcctcctg gcataacgat gccatgacgc
     1921 atcgttactt acgccaaatg gaatccagtc cgtttataaa tcatctggtt gatggaacgt
     1981 tgccgcttat ctgggcgaaa acacgtttat taagtgatga tccggcgaaa ggggagggca
     2041 aggcaaaacg gcattcactg ttaccgcagc gcctgttcga tatcatgggc tcacccagtg
     2101 aacgcatcga tattatctct tcctattttg taccgacacg cgcaggtgtg gcgcaactct
     2161 tacggatggt gagaaaaggg gtaaagattg cgatcctaac caattctctt gccgctaacg
     2221 atgttgctgt cgtccatgcc ggatacgcgc gctggcgcaa aaaattgctc cgctatggcg
     2281 tggaattata tgaactcaag ccgacgcgtg aacaaagtag tacgttacac gatcgcggca
     2341 taaccggtaa ttccggtgcc agcctgcatg ctaaaacctt tagcatcgat ggtaaaacgg
     2401 tgtttatcgg ctctttcaat ttcgatccac gttcgacatt gctcaatact gaaatgggct
     2461 tcgtgataga gagcgaaacg ctggcacagt taattgataa acgctttata cagagccagt
     2521 atgatgcggc ctggcagctc cgtctggaca ggtggggacg gatcaactgg gttgatcgtc
     2581 atgcaaagaa agagattatt ctcaaaaaag aacccgccac cagtttctgg aagcgggtta
     2641 tggtcagact ggcgtcgata ttgcccgtgg aatggttatt gtaaatgtgg cttaacgggc
     2701 tggtgcttta tcgttctcac gcttaacaac cggtttacca gaaaacaaaa acttcagtaa
     2761 cgggatgcgt aaatgaattt catacagaat tatcgcaatc cctactacga atatcaggcc
     2821 acagagaaaa ccaagccagt tggaggtgat gtgcggtgta atgtatgcgc cgaaaaacag
     2881 cgttaacggg tggtgaacca gatagataaa tagcgatgcg ttaacaaagt aagtcacccg
     2941 cgctgactgg aagttaagca aacggtggcc aaaggagaag accacattca ccatccacag
     3001 accgaggacc atggtgatca ccgactcggt ttcgtacatc caggcatcgc cactgccata
     3061 gcgttggttg agtaaataag cgacaaatgc caatgctgct gcaagggtac agccacgaga
     3121 cggcgtggta aacaaggctt taagatgagg gaaaatgaaa gccagtgcac cgaggataaa
     3181 gaacggcaaa taaaatagcg tttgcatgac aataaaattg aacatgccat tactcagaat
     3241 gggcggatac acaataaaaa tcgttcttct tattaccgca tagccgatgc cgaggcataa
     3301 aaaaatcacc gatagtttta ccatcgagaa ttttttattc gttttatcag aattttctaa
     3361 attatttctg atgcgtttaa atatccatac gcacagcgtc gtcatgacta ctaacaccag
     3421 taaaaaccac aggtgtgata ttaattccca ggccaacgta ttatatttgt catacaatga
     3481 cagcccaggc caactttccg ctttcccttt gacgtattgc agcataataa attgcggcaa
     3541 tgtcagtaag gggatggctg ttaacatcgg gatacctaca cgttcgacac gtactttcca
     3601 ccattttttc aagggatagc gtaaaaaaag catgtaggaa aagtagccgg atataacgaa
     3661 aaataccagc atgcggaacg agtggatgaa gtcattaaaa agggtcagcc acaatgacgg
     3721 ttcggcgcta ttcacatgcc atgtatggct cgaatagatt aaagaaatat gaaaagggat
     3781 ccctaacaac atcagccagg cgcggatgga gtcgaggaaa tattcacgtt gcgcgggtac
     3841 tggattcata tatggttaac taatctcgga tttttcgtct tatccctgtc gggttatgcc
     3901 tttaggcttg ttgccatagc gacaccgacc tgaccgcgcc aggcgcaggc ttcaaggttt
     3961 ttatgcatag cataatcgct accactaacc agaatggaag cgtctgtaag acggttgata
     4021 aataaaattg ctggcaaacc ctacacgaag tcgatgcttc tgtctttagg agaagcacgg
     4081 aaagtgaaaa cggttgcaat caggtgctta atccatgagc cagcgtgctg aacgataccg
     4141 ggattctgtt gtcggaatgg ctggttatcc attaaaatgg atcggatcga tataagcaca
     4201 caaaggggga agtgcttact aattatgaaa cataaactac aaatgatgaa aatgcgttgg
     4261 ttgagtgctg cagtaatgtt aaccctgtat acatcttcaa gctgggcttt cagtattgat
     4321 gatgtcgcaa agcaagctca atccttagcc gggaaaggct atgaggcgcc caaaagcaac
     4381 ttgccctccg ttttccgcga tatgaaatac gcggactatc agcagatcca gtttaatcat
     4441 gacaaagcgt actggaacaa tctgaagacc ccattcaaac tcgagttcta ccatcagggt
     4501 atgtacttcg ataccccggt caaaataaat gaagtgactg ccaccgcagt caaacgaatc
     4561 aaatacagcc cggattattt cactttcggc gatgttcagc atgacaaaga cacggtaaaa
     4621 gaccttggtt ttgccggttt taaagtgctt tacccgatca acagcaaaga taaaaacgat
     4681 gaaatcgtca gcatgctcgg ggccagctat ttccgcgtga ttggtgcagg tcaggtttat
     4741 ggcctttctg cccgcggcct ggcaattgat accgccttgc catcgggtga agaatttcca
     4801 cgcttcaaag agttctggat cgagcgtcca aaaccgactg ataaacgttt aaccatttat
     4861 gcattgcttg actcgccgcg cgcgacaggt gcttacaaat tcgtggttat gccagggcgt
     4921 gacacggttg tggatgtgca gtcgaaaatc tatctgcgcg ataaagtcgg caaactgggg
     4981 ggtgcaccgt taaccagtat gttcctgttt gggccgaacc aaccgtcgcc tgcaaataac
     5041 tatcgtccgg agttgcacga ctctaacggt ctctctatcc atgccggtaa tggcgaatgg
     5101 atctggcgtc cgttgaataa cccgaaacat ttagcggtta gcagcttctc gatggagaac
     5161 ccgcaaggct tcggtctgtt gcagcgcggt cgtgatttct cccgctttga agatctcgat
     5221 gatcgttacg atcttcgtcc aagcgcatgg gtgactccga aaggggagtg gggtaaaggc
     5281 agcgttgagc tggtggaaat tccaaccaac gatgaaacca acgataacat cgtcgcttac
     5341 tggacgccgg atcagctgcc ggagccgggt aaagagatga actttaaata caccatcacc
     5401 ttcagccgtg atgaagacaa actgcatgcg ccagataacg catgggtgca acaaacgcgt
     5461 cgttcaacgg gggatgtgaa gcagtcgaac ctgattcgcc agcctgacgg tactatcgcc
     5521 tttgtggtcg attttaccgg cgcagagatg aaaaaactgc cagaggatac cccggtcaca
     5581 gcgcaaacca gcattggtga taatggtgag atagttgaaa gcacggtgcg ctataacccg
     5641 gttaccaaag gctggcgtct ggtgatgcgt gtgaaagtga aagatgccaa gaaaaccact
     5701 gaaatgcgtg ctgcgctggt gaatgccgat cagacgttga gtgaaacctg gagctaccag
     5761 ttacctgcca atgaataaga caactgagta cattgacgca atgcccatcg ccgcaagcga
     5821 gaaagcggca ttgccgaaga ctgatatccg cgccgtacat caggcgctgg atgccgaaca
     5881 ccgcacctgg gcgcgggagg atgattcccc gcaaggctcg gtaaaggcgc gtctggaaca
     5941 agcctggcca gattcacttg ctgatggaca gttaattaaa gacgacgaag ggcgcgatca
     6001 gctgaaggcg atgccagaag caaaacgctc ctcgatgttt cccgacccgt ggcgtaccaa
     6061 cccggtaggc cgtttctggg atcgcctgcg tggacgcgat gtcacgccgc gctatctggc
     6121 tcgtttgacc aaagaagagc aggagagcga gcaaaagtgg cgtaccgtcg gtaccatccg
     6181 ccgttacatt ctgttgatcc tgacgctcgc gcaaactgtc gtcgcgacct ggtatatgaa
     6241 gaccattctt ccttatcagg gttgggcgct gattaatcct atggatatgg ttggtcagga
     6301 tttgtgggtt tcctttatgc agcttctgcc ttatatgctg caaaccggta tcctgatcct
     6361 ctttgcggta ctgttctgtt gggtgtccgc cggattctgg acggcgttaa tgggcttcct
     6421 gcaactgctt attggtcgcg ataaatacag tatatctgcg tcaacagttg gcgatgaacc
     6481 attaaacccg gagcatcgca cggcgttgat catgcctatc tgtaacgaag acgtgaaccg
     6541 tgtttttgct ggcctgcgtg caacgtggga atcagtaaaa gccaccggga atgccaaaca
     6601 ctttgatgtc tacattctta gtgacagtta taacccggat atctgcgtcg cagagcaaaa
     6661 agcctggatg gagcttatcg ctgaagtcgg tggcgaaggt cagattttct atcgccgccg
     6721 ccgtcgccgc gtgaagcgta aaagcggtaa tatcgatgac ttctgccgtc gctggggcag
     6781 ccagtacagc tacatggtgg tgctggatgc tgactcggta atgaccggtg attgtttgtg
     6841 cgggctggtg cgcctgatgg aagccaaccc gaacgccggg atcattcagt cgtcgccgaa
     6901 agcgtccggt atggatacgc tgtatgcgcg ctgtcagcag ttcgcgaccc gcgtgtatgg
     6961 gccactgttt acagccggtt tgcacttctg gcaacttggc gagtcgcact actggggaca
     7021 taacgcgatt atccgcgtga aaccgtttat cgagcactgc gcactggctc cgctgccggg
     7081 cgaaggttcc tttgccggtt caatcctgtc acatgacttt gtagaagcgg cgttgatgcg
     7141 ccgtgcaggt tggggggtct ggattgctta cgatctcccg ggttcttatg aagaattacc
     7201 gcctaacttg cttgatgagc taaaacgtga ccgccgctgg tgccacggta acctgatgaa
     7261 cttccgtctg ttcctggtga agggtatgca cccggttcac cgtgcggtgt tcctgacggg
     7321 cgtgatgtct tatctctccg ctccgctgtg gtttatgttc ctcgcgctct ctactgcatt
     7381 gcaggtagta catgcgttga ccgaaccgca atacttcctg caaccacggc agttgttccc
     7441 ggtgtggccg cagtggcgtc ctgagctggc gattgcactt tttgcttcga ctatggtgct
     7501 gttgttcctg ccgaagttat tgagcatttt gcttatctgg tgcaaaggaa cgaaagaata
     7561 cggcggcttc tggcgcgtta cattatcgtt gctactggaa gtgctttttt ccgtgctgct
     7621 ggctccggta cgcatgctgt tccatacggt cttcgttgtc agcgcgttcc ttggctggga
     7681 agtggtgtgg aattcaccgc agcgtgatga tgactccact tcctggggtg aagcgttcaa
     7741 acgccacggc tcacagctgc tgttagggtt agtgtgggct gttgggatgg cgtggctgga
     7801 tctgcgtttc ctgttctggc tggcaccgat tgtcttctcg ttgatcctgt caccgtttgt
     7861 ttcggtgatt tccagccgtg ccaccgttgg tctgcgaacc aaacactgga aactgttcct
     7921 gatcccggaa gagtattcac cgccgcaggt gctggttgat accgatcgct tccttgagat
     7981 gaatcgtcaa cgctcccttg atgatggttt tatgcacgcg gtgtttaacc cgtcatttaa
     8041 cgctctggca accgcaatgg cgaccgcgcg tcaccgcgcc agtaaggtgc tggaaatcgc
     8101 ccgtgaccgc cacgttgaac aggcgcttaa cgagacgcca gagaagctga atcgcgatcg
     8161 tcgcctggtg ctgctaagcg atccggtgac gatggcccgt ctgcatttcc gtgtctggaa
     8221 ttccccggag agatattctt catgggtgag ttattacgaa gggataaagc tcaatccact
     8281 ggcattgcgt aaaccggatg cggcttcgca ataaaaacgt agttgcctga tgcgctacgc
     8341 ttatcaggcc tacatcgttc ctgcaattta ttgattttgc aagattttgt aggttgggta
     8401 aggcgttcac gccgcatccg gcaaaaacaa cgagccaata aaaataccgg cgtt
//
LOCUS       DAJVUP010000174         8350 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.174, whole genome shotgun sequence.
ACCESSION   DAJVUP010000174 DAJVUP010000000
VERSION     DAJVUP010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8350
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.174"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..127)
                     /locus_tag="OQQ75_003630"
     CDS             complement(<1..127)
                     /locus_tag="OQQ75_003630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS1977815.1"
                     /translation="MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRW"
     gene            201..464
                     /locus_tag="OQQ75_003631"
                     /pseudo
     CDS             201..464
                     /locus_tag="OQQ75_003631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="melibiose:sodium transporter MelB"
     gene            complement(603..1232)
                     /locus_tag="OQQ75_003632"
     CDS             complement(603..1232)
                     /locus_tag="OQQ75_003632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HCS1977816.1"
                     /translation="MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLMEVTPVIIV
                     VPLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDK
                     LGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ
                     GADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG"
     gene            complement(1355..3001)
                     /gene="fumB"
                     /locus_tag="OQQ75_003633"
     CDS             complement(1355..3001)
                     /gene="fumB"
                     /locus_tag="OQQ75_003633"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS1977817.1"
                     /translation="MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEP
                     EALTLLAQQAFHDASFMLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVL
                     PTCQDTGIAIIVGKKGQRVWTGGGDEEALSKGVYNTYIEDNLRYSQNAALDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQEL
                     LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW
                     IEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG
                     RDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL
                     LQSHGGSMIMLAKGNRSQQVTDTCHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVNKQCANCTK"
     gene            complement(3079..4419)
                     /gene="dcuB"
                     /locus_tag="OQQ75_003634"
     CDS             complement(3079..4419)
                     /gene="dcuB"
                     /locus_tag="OQQ75_003634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuB"
                     /protein_id="HCS1977818.1"
                     /translation="MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQP
                     GKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTI
                     LCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLG
                     NVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREY
                     VYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMF
                     MLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLG
                     EMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYIL
                     PTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL"
     gene            complement(4990..5709)
                     /gene="dcuR"
                     /locus_tag="OQQ75_003635"
     CDS             complement(4990..5709)
                     /gene="dcuR"
                     /locus_tag="OQQ75_003635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DcuR"
                     /protein_id="HCS1977819.1"
                     /translation="MSNVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIF
                     NSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVD
                     YLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLT
                     PQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG
                     RPVYRYRIQAEHYSLLKQYCQ"
     gene            complement(5706..7337)
                     /gene="dcuS"
                     /locus_tag="OQQ75_003636"
     CDS             complement(5706..7337)
                     /gene="dcuS"
                     /locus_tag="OQQ75_003636"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DcuS"
                     /protein_id="HCS1977820.1"
                     /translation="MRHSLPYRMLLKRPMKLSTTVILMVSAVQFSVLLVVHLIYFSQI
                     SDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTD
                     MQSLRYSHPEAQRIGQPFKGDDILKALNGKENVAINRGFLAQALRVFTPIYDENHKQI
                     GVVVSGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEIS
                     TLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV
                     VDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRL
                     DGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYSLKTANNYKEEIGSLLGKI
                     KSPVIAGFLISKINRATDLGHTLILNSESLLPDSGSEDQVATLITTLGNLIENALEAL
                     GPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVK
                     QQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR"
     gene            7518..7748
                     /locus_tag="OQQ75_003637"
     CDS             7518..7748
                     /locus_tag="OQQ75_003637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4Fe-4S)-binding protein"
                     /protein_id="HCS1977821.1"
                     /translation="MDQALLDEGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLK
                     RKPWIMPDEVDVVTVVKVIDTCPSGALKYRHK"
     gene            7760..8032
                     /locus_tag="OQQ75_003638"
     CDS             7760..8032
                     /locus_tag="OQQ75_003638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1977822.1"
                     /translation="MEIREGHNKFYINDEQGKQIAEIVFVPTGENLAIIEHTDVDESL
                     KGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDIRS"
     gene            8259..>8350
                     /gene="ghoS"
                     /locus_tag="OQQ75_003639"
     CDS             8259..>8350
                     /gene="ghoS"
                     /locus_tag="OQQ75_003639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HCS1977823.1"
                     /translation="MEGKNKFNTYVVSFDYPSSYSSVFLRLRSL"
BASE COUNT         2064 a         2020 c         2129 g         2137 t
ORIGIN      
        1 cccatcttgt cattgtggaa aggccaacat ccatagcttt ggcggcatct gccaccgtgt
       61 atttctggtc aacaaccagt tgagcggatt cgcgtttaaa ctctgcgcta aaatttcttt
      121 ttttcattgg agcacctgtg ttgttctgag gtgagcatat cacctctgtt caggtggcca
      181 aattcagtgt gccacttcac attgcggttg tgttagggat gattggctat gtaccgaatg
      241 ttgaacagtc tacgcaagcc ctattaggta tgcagtttat tatgattgct ctaccaactc
      301 tgtttttcat ggtaacgctg attctctact tccgtttcta tcgcctcaat ggtgacacgc
      361 tgcgcaggat ccagatccat ctgctggata aatatcgcaa agtaccgccc gagcctgttc
      421 atgctgatat tccggtcggt gcagtgagtg atgtgaaagc ctgacgtgga caatagctaa
      481 cgaaaatggc ctgatgcgat atgtttatca ggccacgtct taatgtaatg ctttggattt
      541 gcaaattttg tagaccggat aaggaattca cgctgcatcc ggcatcaaca aagcgcacgt
      601 tgttatccgg ttatcaagcc aaagcgccgt agctggcggc aatgaaagcg agcgaggaat
      661 atcaccgtcg ttaatgcgcc aagcagcgcg cagaacatat cggattgcgt gtcccactgg
      721 tcgccctggg tgccgagaaa atcatccgct ccctgaccca ttgccagcgc cgcccaccac
      781 tcgattaatt catacattgc gcttatcgcc agcgccacgc agcagactag gaacgccacc
      841 attttacgtc cgcgcacgta catcccgcga acgagaattt ctcgtgccac cagtgcaggc
      901 accagcccct ggaaaaagtg ccccagcttg tcatacggat tacggctcaa ccccagccat
      961 tcctgcacct caaaaccaac ggggactttc gcgtaggtgt attgtccgcc gaccatcagg
     1021 atgatggcgt gaaggaaaat gagcgtatag agcagcggcg ttaacggata acgtctggcg
     1081 gtggcaagca gtagcggcac gacaataatc accggtgtca cttccatcag ccaggtgagt
     1141 ttgtcatggg ccgaaatgcc ggtataaatc aggattaatg ttagcgccag tgcgccggtg
     1201 ttaagaatta acggcttgag tgtgcgggtc atggtgagtt cgcaaatcag ggaaaatact
     1261 gactattcac cagcaagcgt gaaattacaa tcgcaaaaga ggtggcccag ggggatcacc
     1321 tggcagcatg ctgccaggcg ctgggccgaa gaggttactt agtgcagttc gcgcactgtt
     1381 tgttgacgat ttgctggaag aagtcgttac ctttgtcatc gaccaagata aacgccggga
     1441 aatcttctac ttcgattttc cagatagctt ccatacccag ctccggataa gcgacgcatt
     1501 ccagatgctt gatgctctgc tgcgccagta ccgccgccgg accgccgatg ctaccgaggt
     1561 agaagccgcc gtgtttatga cacgtgtcgg taacctgctg actgcggtta cctttcgcca
     1621 gcatgatcat gctgccgccg tgggattgca gcagatccac gtaggagtcc atacggcctg
     1681 cggtggttgg gccaagtgaa cctgatggat aaccggcagg ggttttcgcc ggacccgcgt
     1741 agtagatcgg gtgatctttg atgtactgcg gaagttcttt accggcgtca atcagctctt
     1801 tcagcttggc gtgtgcaata tctcggccca cgataatggt gccggtgagc gacaaacgag
     1861 tggataccgg gtattgcgaa agctgggcga ggatctcttt catcgggcgg ttaaggtcaa
     1921 ctttcaccgc ttcgccttca ccggcctggc gcagttcttg tggaatgtac tggcctgggt
     1981 tgtgttccag tttttcgatc cagatacctt cgcggttgat tttcgcttta atgttacggt
     2041 cagcggagca ggagacgccc atgccgaccg ggcaggatgc gccgtgacgt ggcagacgga
     2101 taacgcgaat gtcgtgcgcg aagtatttac cgccaaactg cgcgccaaga ccgagtttct
     2161 gggcctcttc cagcagttcc tgttccagct ggacatcgcg gaacgcctga ccatgttcgt
     2221 tcccttccgt cggcagttca tcgtaatagt gagcgcttgc taacttgacg gttttcaggt
     2281 tggtttccgc agacgtaccg ccaatcacaa acgcgatatg gtacggcggg caggctgcag
     2341 taccgagggt acgcattttc tcgacgagga agtttttcag tttgccggga gtcagcaggg
     2401 ctttggtttc ctggtagaga tacgttttgt tggcagagcc gccgcctttc gcaacgcaaa
     2461 ggaatttgta ctcatcgcca tctaccgcgt acaggtcgat ttgcgcaggc aggttagtgc
     2521 cggtgttgac ctctttgtac atgtccagcg ccgcattctg tgaatagcgc aggttatctt
     2581 cgatataggt gttatagacg cctttcgaca gcgcttcttc atcaccgccg ccggtccaca
     2641 cgcgctggcc ttttttaccg acgatgatcg cgatgccggt atcctggcag gtcggcagca
     2701 cgcctttggc ggcgatttcg gaatttctta agaattgcag cgccacgtac ttgtcgtttt
     2761 cgctggcttc tggatcgtga agaatagccg caacctgttt ctggtgtgcc gggcggagca
     2821 taaaagaagc gtcgtgaaag gcttgctgcg ccagcagggt cagggcttct ggttccactt
     2881 tcaggatggt ttcgccgtcg aagtcggcaa cgctaacgta atcggaagtg agtagatagt
     2941 attcggtatt gtctttcccc atcgggaaag gtgcctggta gataaagggt ttgtttgaca
     3001 tagcttccag cctgtaactc tgtatttgtt attcgaaaat ggcgtgccgc gtagtcacgg
     3061 gcggcacgca aagtgcattt ataagaaccc gtacatcgcg gcgaagatcc agccgaagac
     3121 gcacgatacg ctcacaccaa tcaaccccgg cagaataaag ctgtggttga tgacgaagcg
     3181 accgatgtgg gtggtgccgg aacggtcaaa ctgaatcgct gccagatcgc tcggataagt
     3241 cggcaggatg taataaccgt agcaagccgg tgctgaagcc acgatgtatg ccggatcaac
     3301 gccgatcgcc aacgcgaccg gaacaatcgc cgccagcgcc gcagcctgag agtttacaaa
     3361 cttggaaacc agcagcagaa caatggcata ggcccacgga tactctttca ccatttcacc
     3421 cagtacgccc tgaatttcag acatatgcgc accgaacatg gtttctgcca tccatgcgat
     3481 accgtacacc gccacgatgg cgatcatacc ggaacggaag acttcgtttt ttgagataga
     3541 cgcgggattg gttttggtca ggataataat cagcgccccg gtcagcagca taaacatctg
     3601 aataaccagt accatcgaca gcggtttgcc gccgaaggat ggacgcaggt ccgaatcagc
     3661 accaagaagg gcgactacag cgattgcccc gaggaaaatc cacattgcca gccagttgct
     3721 tttcggcagt tttttatcca gcagcgtcgc ggtatcaccg taaacatact cacggttttc
     3781 cggtacggag atgaatttct ggaactcttc gtctttatcc agatctttac cacggaacca
     3841 gctgaagata ccgatcgcca ggataccgat taacgtcgat ggaatggtga ttgccagcag
     3901 gtcgaggaac tcaagatggc gaccatcaaa ggtgacatta cccagcatcg caaccagaga
     3961 cacgaccgca accgacaccg gactggcgat aatccccatc tgtgcaccga tagaacttgc
     4021 cgccatcgga cgttccggac ggatgttgtt cttaatggcg acgtcgtaga tgatcggcag
     4081 aatggtgtaa accacatgac ccgtaccgca aagaatggtc agcgtacagg tcacaaacgg
     4141 cgcgacaatt gagacatatt tcgggttgcg gcgcagcaac ttctcggcaa tttgcagcat
     4201 gacatcaaga ccgcccgaag cttgcaaggt cgccgatgcc gccaccaccg caatgataac
     4261 cagcatgaca tcaaccggtg gtttacctgg ctgaaggtgg aagacgaaga ccagaatgac
     4321 cagaccgata ccgcctaata aacccagcgc gataccaccc tttctggcac cataaaacag
     4381 acatatcagt attatgataa gttggatagt aaataacatg tgtgaaccct cgcgataatc
     4441 ctatttaaat ttttgctgaa tagatcacag tcacgttctg ttttgtatga actgttttca
     4501 gagcctgact aaatatccgt ttggtcgtta ccggctttag caaatacctc acagtaaata
     4561 ttggctgatt aaagcagcgg caaatttatg cactgtgata agcggctttt tcagagagaa
     4621 aaactctctg gcgatgggtt tatagtttgt actgcgcaga tgttaatgtt ttgtttgctg
     4681 ttatcttatt gatatttatc ggtctatttt ttgttctcag ggcagatatc attaggttta
     4741 aagattaatc ttatctaccc atttgtgggt gaaaatacac ataatgcggg tgacataata
     4801 gttaattaac ttttgttagc gttttgaaat taaaaacacc gttcacctga agagatatta
     4861 atttttagcg atgatggagg gataattata tttgatctgg cacaagtttt actgatgaag
     4921 gatgtaactt gtgccagggg tattttgcat tacggtaata attattactt acagataacc
     4981 agcgatccgt tattggcaat attgtttcag tagtgagtag tgttctgcct gaatacggta
     5041 acggtaaacc ggacgccccg tgacgccata atggatactg gtgaacaaga tgtggcagtt
     5101 gaccagccag atgaggtatt tacggcagga aacacgcgag atgttaacct cgttagccag
     5161 ctcgtcggtt gaaaactcat agtcctgatg cgcgtcaatc cactggcaca gcgtgcgtaa
     5221 cgtctgcggc gttaagcctt ttggcaagcg acgaggatcc tgttcgttgg agctgctgcc
     5281 gtggattagc tgatcaagct cggcctggtc ataatactga tgtttttcca gcgccatttt
     5341 cttttgccgc cagccggtga gcgcctcttc aaagcgggaa gcctggaagg gtttgatcag
     5401 gtaatccacg acaccgtaat gcagcgaatc tttaatggtt gccgcatcgg ctgcggagga
     5461 gatgacaatc acatcacttt tgcaacgcgc gttatgcagg acaggcagta aatcgagccc
     5521 gttctctttt tgcatataga tatcgagcaa tatcaggtcg ataggcgtat cgctattgaa
     5581 gataatctct ttggctttct ccagcgtcga ggctgttcca cagcattgaa agcctgggat
     5641 ttgtgctacg tatcggcgat tcagctccgc gaccattgcg tcgtcatcga taattaatac
     5701 attgctcatc tgtttgacct ctccccgtcc cagggtatct ggacaaaaaa ttgtgtgaaa
     5761 atcccgggtt ccgattccac ggcgatgctg ccgccgagat tttctacctg ttgtttgaca
     5821 agtgctaaac cgacgcctcg ctcgcttcct tttgtcgaga cacctttgtc aaaaatgtga
     5881 tcgattttgt cgggtgcgat ccccggtcca tcatcgttaa cttcgcagtg cagccagccg
     5941 tgacggtagt gcaatgttac gctaatttcg ccaccgggtt ccggccctaa tgcttccagc
     6001 gcgttttcta tcagatttcc caatgtggta atcagcgtcg cgacctggtc ctcactgccg
     6061 ctgtctggca gcaggctttc actgtttaaa atcagcgtat ggcctaaatc ggtcgcgcgg
     6121 ttaatcttgc tgattaaaaa accagcgata accggagatt tgatcttacc cagcagagag
     6181 ccaatctctt ccttatagtt attggctgtt ttgagactgt aatcttccaa ctgcttataa
     6241 ctcttcagat gcaataatcc gagaatcaca tgcaatttat tcataaattc gtgggatcgt
     6301 tcacgaagtg catcagcata gttgaccaga ccgtcgagtc gctgcatcag tttacgaact
     6361 tcagttttgt ccctgaaggt tgaaatggca ccgatgataa cgccattact gcgcaccgga
     6421 acggtgttga tcagtaatag ccggtcttta atcgtaatct cttcgtcgcg gcgcggcgta
     6481 ccgtcgcgta acacttccga gacatctacc acctgtgacc atgagtggct tagcgtcgac
     6541 agtttctcat cgtcctgcga cttacggtaa ttcagcaatt cttgtgcggc atcgttgatc
     6601 agcgtgacct cgccgcgatc gtccacggca acgacgcctt ctttgataga ctgcaacatg
     6661 gcctggcgct gctcaaacag cgtggagatt tcgtagggtt ccaggccgaa aaggattttt
     6721 ttcagtacct taaccagaat gcaggtgcca atcagtccga ccagcatgcc aaataatacc
     6781 gaccagataa tgctccagcg actgtcattg atttgttggg tcacgcggct taactcaagg
     6841 ccgctcacca ccacgccaat ttgtttatga ttttcatcgt agatgggggt aaatacgcgt
     6901 aaagcctgcg ccagaaaacc gcgattgata gcgacatttt ctttgccatt cagcgcttta
     6961 aggatgtcat cacctttaaa tggctgacca atacgctggg cttcaggatg cgagtagcga
     7021 agactttgca tatccgtaac gacaataaac agcagatcgt tgcgtttgcg cacggcttcc
     7081 gcgatggcct ggattccgct ctcctgcggt tttttctgca agccctgacg gatttccggc
     7141 gagtcggcga gggtacgcgc cactgccagt gccttgttgg ccagcccgtc tcgtgtcata
     7201 tcactgattt gcgagaagta aatcagatgc accaccaata gcaccgagaa ctgtaccgcg
     7261 ctgaccatta agatcactgt ggtactcaat ttcatcggac gtttgagtaa catgcggtag
     7321 ggcaatgaat gtctcatcag cttccttgtg tgacaaattt cttaagcatt atctctgatg
     7381 aggcgggtaa ttcaaagggc gtaagaatga ttggctatat aggggaagag actctggcaa
     7441 cggaaactgc cagtgctgta tgaagattcc agggctatgc ttatagcgat aatcatactg
     7501 atgagagagg gaaagtcatg gatcaggcgc tactggacga gggttatcgc tgttataccg
     7561 gcgaaaagat cgatgtctat ttcaacactg cgatatgtca gcattctggc aattgcgtac
     7621 gtggcaacgg caagttattt aatctcaaac gaaagccgtg gatcatgccg gatgaagtcg
     7681 acgtcgtcac tgtggttaaa gtgattgata cgtgcccgag cggcgcgctg aaataccgtc
     7741 ataaataagc gagggtaaaa tggaaatacg cgaaggccac aataaatttt acattaatga
     7801 cgaacagggc aagcaaatcg ctgaaattgt ctttgtgccg accggagaga atttagcgat
     7861 tatcgaacat accgatgtcg atgaaagcct gaaagggcag gggattggta aacagctggt
     7921 tgcgaaagtc gtggaaaaaa tgcgtcggga aaaacgaaaa attatcccac tatgcccatt
     7981 tgcgaaacac gaatttgata aaacgcggga gtatgatgat attcgcagtt gatgggagag
     8041 tacagagtca cgatattttt catgctctcc gcggagtgat gcaggagagc atctgaaggg
     8101 tagggggatg cacaaagaat gggcagagag cgcgtttttt tgtcccacgt catccccttt
     8161 actgagcaaa aaaaagaata tctcctatat gagaatcatc aatcggggtt aataagtttt
     8221 gcgtccccag agcattcaat attgatagga gtcatattat ggaaggtaaa aacaagttca
     8281 atacttatgt tgtttctttt gattatccat catcttattc ctcagtgttc ttaaggttaa
     8341 gatcattgat
//
LOCUS       DAJVUP010000175         8313 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.175, whole genome shotgun sequence.
ACCESSION   DAJVUP010000175 DAJVUP010000000
VERSION     DAJVUP010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8313
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.175"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(95..1765)
                     /gene="hscC"
                     /locus_tag="OQQ75_003640"
     CDS             complement(95..1765)
                     /gene="hscC"
                     /locus_tag="OQQ75_003640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HscC"
                     /protein_id="HCS1977824.1"
                     /translation="MDNAELTIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS
                     MDENNHILVGKPAVSRRTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSL
                     KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL
                     HTQQNTRSLVFDLGGGTFDVTVLEYATPVIEIHASAGDSFLGGEDFTHMLVDEVLKRA
                     EVARTTLNESELAALYACVEAAKCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLL
                     NRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV
                     ALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRV
                     ETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGL
                     LEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAKLEE
                     LWARALGDEREEIGRVITDFDAALQSNDMARVDEVRRRASDYLAIEIP"
     gene            complement(1849..2784)
                     /gene="rihA"
                     /locus_tag="OQQ75_003641"
     CDS             complement(1849..2784)
                     /gene="rihA"
                     /locus_tag="OQQ75_003641"
                     /EC_number="3.2.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-specific ribonucleoside hydrolase
                     RihA"
                     /protein_id="HCS1977825.1"
                     /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK
                     TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC
                     TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT
                     PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHIEDTERFRAIGNPVSTIVAE
                     LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVV
                     DYYYLTDNKPNATVMVDVDRQGFVDLLADRLKFYA"
     gene            complement(2902..3627)
                     /gene="gltL"
                     /locus_tag="OQQ75_003642"
     CDS             complement(2902..3627)
                     /gene="gltL"
                     /locus_tag="OQQ75_003642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter ATP binding
                     protein GltL"
                     /protein_id="HCS1977826.1"
                     /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ
                     VKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS
                     PKDAFFDDPKSDRAKDFLAKILH"
     gene            complement(3627..4301)
                     /gene="gltK"
                     /locus_tag="OQQ75_003643"
     CDS             complement(3627..4301)
                     /gene="gltK"
                     /locus_tag="OQQ75_003643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltK"
                     /protein_id="HCS1977827.1"
                     /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM
                     RLSSFAPVAWFAKAYVNIFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV
                     AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT
                     QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY
                     LKRRTA"
     gene            complement(4301..5041)
                     /gene="gltJ"
                     /locus_tag="OQQ75_003644"
     CDS             complement(4301..5041)
                     /gene="gltJ"
                     /locus_tag="OQQ75_003644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltJ"
                     /protein_id="HCS1977828.1"
                     /translation="MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAF
                     LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA
                     ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL
                     LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA
                     YVLINAIIMLVMTLVERKVRLPGNMGGK"
     gene            complement(5211..6119)
                     /gene="gltI"
                     /locus_tag="OQQ75_003645"
     CDS             complement(5211..6119)
                     /gene="gltI"
                     /locus_tag="OQQ75_003645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter
                     substrate-binding protein GltI"
                     /protein_id="HCS1977829.1"
                     /translation="MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVV
                     GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLL
                     QNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADLKDKAVVVTS
                     GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKK
                     PDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP
                     KNLNMNFELSDEMKALFKEPNDKALN"
     gene            6574..>8313
                     /locus_tag="OQQ75_003646"
     CDS             6574..>8313
                     /locus_tag="OQQ75_003646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCS1977830.1"
                     /translation="MSASSVKPLNVQLPAITLILFALCIGIFCYLAQWMSYEEVDQSA
                     LIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMFAFLVVGGVAEQILGKWRLLI
                     TWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGAAIATQLASGAGTYHKNQR
                     RVFSLLGMVALTLLYGARQTGIDNACHIGGLIAGGALGWLSARLSGQNRLVTEGGIIV
                     AGSLLLTGAIWLAQQQMDESVLQVRQSLREAFYPQEIEQERRQKKQQLAEERNALRET
                     LSAPVSREQASGDLLAEIADIHDMAISRDGNMLYAAIENTNSIVVFDLGQKKILHTFT
                     APIAKEKSVKHCGGCKDQGVRSLALSPDEKLIYATSFEANALSVINVATGEIIQSITT
                     GAHPDSLILSRDGTKAWVMNRTSNSVSAIDLVTYQHVADIPLEKYDGAGTSGKPGAWV
                     MALSPDERTLLVPGAGRGNIVRINTITHQKEDFPAGDARGTISAMRFRPENGEVIFAD
                     SQGISRISVGDQQASIMTQWCSRSVYSVEGISPDGQYLALVSYGLQGYVILLNINAGQ
                     IIGVYPASYVNHLR"
BASE COUNT         2076 a         2053 c         2076 g         2108 t
ORIGIN      
        1 atgctctcgg caaaatcgcg atgttgttta gttgacgatg tgttttttgc gccgatgccg
       61 gatgcagcgt ttacgccgca tccggcagcc gtgtttatgg gatctcaatg gctaaataat
      121 cgctcgcccg ccgccgaact tcatccacgc gggccatgtc gtttgactgt agcgccgcat
      181 caaaatcggt gatcacccgg ccaatctctt ctcgctcgtc acccagcgct cgcgcccaca
      241 actcttccag tttggcttta aaggtgcgat tgatgagcat atcgcgcgga taaattttca
      301 atgcggataa ccgcgtccga ctctcttcaa tctgctgcgc gctcaatgtt accgggctgt
      361 ggttaatcac tctggactta acgctgccgt cttccagaag cacgtcaact tcaagcaacc
      421 cgttgatatc ataactaaag cgaatatcaa tcgactgata agccccggtt ttcttcaacg
      481 gcacatcgaa ggattcaacc agaatgttat ttttaacttt gtggttttct ccctgataga
      541 cgttaaccgt aattgaatcc tgctccgggt gcatggtcga gtaagtttct acacgcgaca
      601 ccggtactgt ggtgtttcgt tcaataatcg gcgagaaaat gccggaaacg ccctggcggt
      661 taacttcaac gcccaacgag taagggcaaa tatcagtgag gattacctct tcaatatctt
      721 cactgcgtaa gcggcaggcg gcctggattg ctgcgcccag cgcgacaatg gtgctcggat
      781 cgtaactttg atacggtaat ttgccaaaca gacgcacggc gattcgctgc accagcggca
      841 tttgtgacgc gccgccaacc agcaccagac tgtcgatttg actcggcttc agacgcgcat
      901 cgcgcaacgc ctgttcaatc ggcactcgca agcgattgag cagcggcaac cacaaatctt
      961 ccagttcgtt ctcgtaaaat tcgcattccc gcgtttcttc ctgatactgc cagcgaatgt
     1021 gcaatggcga ttgattgcta cattttgccg cttccacaca ggcgtacaag gctgccagtt
     1081 cactctcgtt aagcgtggtc ctggcaactt ccgcgcgttt taaaacctca tcgaccagca
     1141 tatgggtaaa atcttcgcca ccgaggaagc tatcgccagc ggaggcgtga atttcaatca
     1201 ccggcgtggc gtactcaagc accgtaacgt caaacgtgcc gccaccgaga tcaaaaacca
     1261 gcgagcgggt attttgttgc gtatgcaggc catatgccat cgcagctgct gtgggttcat
     1321 taattaagcg taccgcattt aacccggcta actccgcagc taaacgggta tgcttgcgtt
     1381 gttcatcgct gaaataagcc ggaacggaga tcaccacatc tttaatcgga cgttgcagaa
     1441 attcttcggc atcttctttt aatgagcgta ataccaaaga ggacagttct ggcgcgttaa
     1501 atgtgtcgct gcctaaccgc cagttggtat tactgcccat tgcgcgttta aataacgctg
     1561 ccgttttatc cggatgcgaa gtacgccgtg atacagccgg ttttccgact aaaatatgat
     1621 tattttcatc catgctaatt atggatggtg ttaaatattc accgaactta tttggaatta
     1681 attgcgcggc accgtctttc cagacggcaa ttaaactatt ggtagtgccg agatcgatac
     1741 caatggtgag ttctgcatta tccattgcat ttatatcttg aaagaaaaag agataaacag
     1801 attaagacca cccaggtaac gcgtggtgat cttaatcaat gacgtgtgtt aagcgtaaaa
     1861 tttcagacga tcagccagta aatcaacaaa gccctgacga tcaacatcga ccattacagt
     1921 ggcattcggt ttattgtcag tcagataata ataatcaaca accgtcatac cctgggtata
     1981 tttcccctgt gtttccacgc caacccagcg ctcaacagtg gtaaacaact cgggtttcaa
     2041 cagccaggcg atggtgcatg ggtcatgcag cggtgcaccg acaaagcccc atttttcgtc
     2101 tttatgatat tcgaggaaga aatccagcag ttcggcaaca atggttgaaa cagggttgcc
     2161 aatcgcgcgg aaacgctcgg tgtcttcaat gtggatttgc gctttatgag taacatccag
     2221 accggccatc accactggga tccctgactg gaagacaatt tctgccgctt ccgggtcaac
     2281 gtaaatatta aattcagccg caggcgtcca gttaccaagc cccattgcgc cgcccataat
     2341 cacgatacgg gcaattttgc tatgcagttc cggatggcta ttgagcagca aggcaacgtt
     2401 agtttgcggt ccggtagaca caatcgtgac aggttccgca ctttcgcgca gcgttttcgc
     2461 catcagctct accgccgtac agttttgcgg tgcgaacgtc ggttccggta atgccgggcc
     2521 atccagaccg ctttcgccgt gcacattgtc cgcgataatc aactcacgca ttaacggttt
     2581 taccgcgccg cctgctaccg gaatatcggt gcgattaagc aaggtcagca tacgcagaac
     2641 attgcgtaag gttttttctg gtgtctggtt tccggcggaa gacgtaattg ctttgacatc
     2701 aagctctggt gaggcgaggg cgagaactat tgcgatagcg tcgtcatgac ctgggtcgca
     2761 atctaacaga attggcagtg ccattgttgc tccttgttgt gtgcttcttt gcgacaaggg
     2821 taacgccagg atgtaacaga tacgaggggc gaaacgataa agcgtgagat ggcgcgcact
     2881 tgggtatgcg cgccagagtg attaatgcag gattttcgcg aggaagtctt tcgcgcggtc
     2941 cgatttcgga tcatcgaaga aagcgtcttt cggcgagtct tcgacaattt taccctcgtc
     3001 cataaagatc acccgattcg ccactttgcg ggcaaagccc atttcgtggg tcaccaccat
     3061 catggtcatt ccttcgttcg ccagttccac catcacgtcc agcacttcgt tgatcatctc
     3121 cggatccagc gccgatgtcg gttcgtcgaa cagcatcgca ataggatcca tacacaacgc
     3181 gcgagcgatt gccacacgct gctgctgacc gccggaaagc tgcgccggaa atttattggc
     3241 atgtgcggaa agtcccacgc gctccagcaa tttcaatgct ttttcacgag cgggcgcttt
     3301 atcgcgttta agcactttca cctgcgccag agtcaggttt tcaataatcg acaaatgggg
     3361 gaacaactca aaatgctgga acaccatccc gacgcgggaa cgcagctttg ccagatcggt
     3421 tttcttgtca ttaaccacga taccatcgac ggtgatttca ccttgctgca ctggttcgag
     3481 gccgttgacg gttttaatca gcgttgattt gccggaacca gacgggccgc aaaccaccac
     3541 cacttcgcct tttttcactt cggttgagca gtcggtcagc acctgaaagt gaccatacca
     3601 ttttgaaaca tttttcaggg taatcattat gctgtccttc ttttcaagta gctgaccaac
     3661 aacgacgcgc taagactaat aacgaaataa acaaatccgg caaacaggat catctcaacc
     3721 tgcgtaccat cacgctcacc aatggttgag gcggtacgga agaaatcggc cagagataac
     3781 acatacacca gtgaggtatc ctggaacagt acgatgccct gagtgagcag aagcggcacc
     3841 atcgcgcgga acgcctgcgg cagaataatc agtttcatcg actgccagtg agtcattccc
     3901 aacgccagcg cggcgctcga ctgaccacga gaaatacttt gaataccagc acggataatc
     3961 tctgaatagt aggccgcttc aaacatcgaa aacgccacca tcgccgaaat taaacggata
     4021 tcattttttg gtgataatcc cagcacgttt tgcagaaaac ctggcacgat caggtaaaac
     4081 cacagcaaaa ccataactaa aggaatcgag cggaatatgt taacgtaggc tttggcaaac
     4141 cacgctacgg gcgcaaagct ggacaagcgc atcaccgcca gcatggtgcc ccacaaaata
     4201 ccaatcacga ctgccgtgac ggtgattttc agcgtgatca ccagcccgtc gagcagatat
     4261 ggcaaggaag ggacaatgga actccagtca aactcgtaca ttatttgccc cccatgttgc
     4321 caggcaggcg aactttacgt tcaaccagcg tcattaccag catgataatc gcgttaatca
     4381 acacatacgc cagcgtaata gcggtaaacg actcccaggc gtgggctgag taatcaagca
     4441 atttacccgc ctgcgccgcc atatccacca gaccaatagt cgaggcgatg gcggagtttt
     4501 tcaccaggtt catcatctcg gaagtcatcg gcgggacgat aacgcgataa gcattaggca
     4561 gcagtacgta tcgataagcc tgcggtagcg tcaggcccat cgccagcgcg gcattttttt
     4621 gcccacgcgg caacgactga atggcggcgc gtacctgttc gcaaacacgg gcggcggtaa
     4681 acagccccag gcagagcatg gatgaaagga aaaactgaat attgggatcc agctcggcct
     4741 taaaccacat gccgattttc tcaggcaaca gctccgggat caccagatac caggtaaaga
     4801 attgcacaat caacggcacg ttgcggaaca gttcgacata caacgtaccc agaccggaga
     4861 gaaaacggtt tggaacggta cgtaaaatgc cgaaaaatga accgacgagg aaagcgataa
     4921 tccaggcgca gatcgacaaa gcgatcgtca cctgaaaacc actccagatc caaccaagat
     4981 aggtggtgtt gccgaacggg gcttgttgta aaaaaatacc ccagttccag tctatagaca
     5041 taaatctact ccagaaaaaa gagggtagca gcgttaactg ctaccctcga agattgttac
     5101 ccagcgtatt gcggttttca ggcccgatgg ggaacgacca tcaggcgtat agtctgtccg
     5161 tgctacgtaa caatcgagag ggctggaatt tccgcccctg gttcttgtaa ttagttcagt
     5221 gctttgtcat tcggttcttt gaacagtgct ttcatttcgt ctgacagttc gaaattcatg
     5281 ttcaggtttt tcggcggaat tggatttttg aaccatttat caaaccattt ttccgcttca
     5341 ccggaagtct gcacctgagc gatagtgtca tccatcagct ttttgaactg cggatcatct
     5401 ttacgcaaca tgcaaccgta ggcttcctga gactgcggct tgccgacgat atcccagttg
     5461 tctggtttct tcgctttcgc acgttcaccg gccagcaggg catcatccat cataaaggca
     5521 acggcacgac cgctttccag ggtgcggaaa gagtcaccgt gatctttggc gctgatgatg
     5581 cgcatattca ttttttgctc ttcattcagt ttgttgagca aaacttcaga ggtagtgccg
     5641 gaagtgacga ctacggcttt gtctttcagg tcggcaaaat ctttgatatc gccgcccttt
     5701 ttggtcagca ggcgcgtacc gaccacgaaa atagtatcag agaaagccgc ctgtttttgg
     5761 cgttcgacgt tgttggtggt agaaccacat tcaaaatcga aagtgccgtt ttgcagcagt
     5821 ggaatacggt tttgtgaggt aatcggaatc agttttacct gcaagtccgg tttgttgagt
     5881 ttctttttca ctgcttcaac aatggcgttg gagtaatcct gcgagtaacc caccactttt
     5941 tgctgattgt cgtaataaga gaaaggtact gaagattcac ggtgaccgac gacaatcaca
     6001 ccgtttttgg cgattttgtc cagcgtactg cctgctgccg gggcggcgtc atctgcctgt
     6061 gccagtcctg cggaaagcgc cagggcgagg attgctgtgg caggtttacg taattgcata
     6121 tccaactcct ttatcttctg cgttaagaac gcatggatac ccgttgtgag tgtttgtgtt
     6181 gttatcgtct gcaactttat tgtgcagtgt tgtgcctgtt aggtaacatt tagtttggct
     6241 aaatgtaaag atattgctgt tttattgttt gtttttgcga gatgcgccgc accattccga
     6301 agcaaaattc ttaaaccgca cctttttggt gctaccgctg atttgtggtg gtgcaacctg
     6361 gttgcgtcgc ggctgatttc atcgcttaca cagtaaataa agcaacttac atgccaaaaa
     6421 atacttaggg gcaaattaat tacgattgta attttaggct gaaaaagtca tatttcggac
     6481 agaattatct tttcggcatg ggacgtttgc cgggatgata actgcacacg ggaaaaatgc
     6541 tttttacctg tcttttcaag gaagaaacac cttatgtctg catcttcggt taagccgtta
     6601 aatgttcaat tacccgcaat aacccttatc ctttttgcac tctgtattgg gatattttgt
     6661 tatctcgcac aatggatgag ttatgaagag gtcgatcaat ccgcacttat ccatctcggc
     6721 gcaaacgttg cgcctcttac tttgtcgggt gaaccctggc gcttattgag cagtatcttt
     6781 ctgcacagta gtgtttctca tctgctgatg aatatgtttg cattcctggt cgtgggaggc
     6841 gtggcggaac agattctggg gaaatggcga ctcctgatta cctggttatt ctccggcgtc
     6901 tttggtgggc tcatcagcgc ctgttatgcg ttacgcgata gtgatcagat agtcatcagc
     6961 gttggggcat ccggggcaat tatgggaata gctggcgctg cgatagcaac acagcttgct
     7021 tcaggtgcgg gcacatacca taaaaaccag cggcgagtat tttctctgtt gggtatggtg
     7081 gcgctgacac tgttgtatgg tgcccggcaa acaggaatag ataatgcttg tcacattggc
     7141 ggcctgattg cgggtggcgc gttgggttgg ctgagcgcgc gtttatctgg gcaaaaccga
     7201 ctcgttacgg aaggcgggat tattgttgcg ggcagtcttc ttctgaccgg ggctatctgg
     7261 cttgcgcagc agcagatgga tgagtcagtt ttacaagtca ggcaaagcct gcgtgaagcg
     7321 ttttatccac aggagattga acaagagcga cggcaaaaaa agcagcagtt agcggaggaa
     7381 cgcaacgccc tcagggaaac attatccgct ccggtaagtc gtgaacaggc cagtggtgat
     7441 ttgctcgctg agattgccga tatccatgat atggcgatca gtcgggatgg taatatgttg
     7501 tatgccgcaa ttgaaaacac gaacagcatt gttgttttcg acctcggaca aaagaaaatc
     7561 ctgcatacct ttacagcgcc catagcgaaa gaaaagtcag tcaaacattg tggtggctgt
     7621 aaagatcagg gcgtcagatc gctggcatta agcccggatg aaaagttgat ttatgcgact
     7681 tcatttgaag cgaatgcgtt atcggtcatt aacgtggcga caggggagat tattcagtcg
     7741 attaccaccg gtgcacatcc tgacagcctt atcctctcgc gtgatggcac aaaagcctgg
     7801 gtgatgaatc gcaccagtaa tagtgtgtca gcgattgatc tggtgactta tcagcatgtg
     7861 gcggatatcc cgctggagaa atacgacggg gcggggacga gcggtaaacc aggcgcctgg
     7921 gttatggcac tttccccgga tgaaagaaca ttactggttc cgggagcagg cagaggtaac
     7981 atcgtgcgga tcaataccat cacgcatcag aaagaagact ttcccgcagg tgatgcgcgt
     8041 ggaacgatat cggcgatgcg ttttcgacct gaaaacggcg aggttatttt tgcagatagt
     8101 caggggattt cacgtataag cgtaggggat caacaagcca gcattatgac gcaatggtgt
     8161 agcaggagcg tttattccgt tgagggtatt agcccggacg gtcaatattt agcgttggtg
     8221 tcatatggcc tgcaaggtta tgtcatcctg ctcaatatta atgccgggca gattattggc
     8281 gtttatcctg ccagctacgt taatcacctt cgt
//
LOCUS       DAJVUP010000176         8216 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.176, whole genome shotgun sequence.
ACCESSION   DAJVUP010000176 DAJVUP010000000
VERSION     DAJVUP010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8216
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.176"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..835)
                     /locus_tag="OQQ75_003647"
     CDS             complement(<1..835)
                     /locus_tag="OQQ75_003647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1977831.1"
                     /translation="MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGA
                     ATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPP
                     SLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPD
                     LPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRL
                     PELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYH
                     GP"
     gene            945..1124
                     /locus_tag="OQQ75_003648"
     CDS             945..1124
                     /locus_tag="OQQ75_003648"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977832.1"
                     /translation="MWLAENEGVKFWLNVLTELKKCGWSPYLFIKPVVCPPLHHFSAL
                     IEILSMVVNSTNPVR"
     gene            1314..1403
                     /locus_tag="OQQ75_003649"
                     /pseudo
     CDS             1314..1403
                     /locus_tag="OQQ75_003649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311139.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
     gene            1427..5941
                     /locus_tag="OQQ75_003650"
                     /pseudo
     CDS             1427..5941
                     /locus_tag="OQQ75_003650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000536590.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
     gene            5942..7591
                     /locus_tag="OQQ75_003651"
     CDS             5942..7591
                     /locus_tag="OQQ75_003651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfaQ family protein"
                     /protein_id="HCS1977833.1"
                     /translation="MNWRRIVWLLALVTQPTLAEETPLQLALRGAQHDQLYQLSSSGV
                     TTVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRD
                     TALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLA
                     TLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTD
                     GTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKST
                     TAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDRE
                     AKSTPPEAAKAMTVAIHTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWT
                     QDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRS
                     TCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRN
                     FFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD"
     gene            7596..>8216
                     /locus_tag="OQQ75_003652"
     CDS             7596..>8216
                     /locus_tag="OQQ75_003652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977834.1"
                     /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF
                     SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKIQQGRLVVNGASMPQRVESDGSF
                     ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV
                     VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVY"
BASE COUNT         2004 a         1973 c         2310 g         1929 t
ORIGIN      
        1 gtgggccgtg gtagtccggc gaagaggtta atctttgcag ggcttgcaga gtgcgagtcg
       61 acaatggatt gttataaata ttaacatctg cataaatgtg cagattcatg atactgtctg
      121 gcaatgtgtt cagctgattg ttagggatat atagtgattg cagacgttgt ggaagttcgg
      181 gcagtctgtg tagttggttt tccccaacgt ttaaaagcct cagattttga ggaaggggcg
      241 gtagctcttg taatctgtta tcaaaagcac ttagttcctg tagttcacat ggtaattctg
      301 gtaaggcagt aagctggttg ttgccaacag aaagtttttg tagagccggg ggaagatcag
      361 gtagcgtctc caggctattg agaagggctg agagtgactg caaggaagat ggaagagaag
      421 gtaaacatgt taaaactctg ttaagtgaaa catcaagagc gaccaggtga ggcggaagag
      481 ccgggagcct gctcagtctg ttatcgctgg ctttaagtac agttaaggac ggagggagtt
      541 ctggcagaga gcgtagctca ttgctagaga tgttaagttc ttgtatgtgc gggggcaggt
      601 atgggagaga gcgtaatctg agtaaactta aattgagggc tggctcttga aaagccagac
      661 atattttcag taatcgaact gcctgtgttc ggtcttctgt tgcagcacct tccttggccc
      721 agttatccca gatgcggtga taatccgtga tattttgctc ttctacggat aaacgggata
      781 tacatcctaa accacaaaag gagcggaaaa aagaaggatt gtgggcaggt ttcatttatt
      841 attgatcctc attgtttata tattaatatg ttcgtgcaaa tggagtgagg attctttaaa
      901 aaaacgctcc tgtaaatagt taagaacagg aagaactgtt ggggatgtgg ctggccgaaa
      961 atgaaggggt gaagttctgg ctcaatgtgc tgactgaact gaaaaaatgc ggttggtcgc
     1021 cctacctttt catcaagcca gtagtctgcc caccactgca tcatttctct gcgcttatcg
     1081 agatactgag catggttgta aattcaacta acccagtgcg ttgacaaaaa attagcgcaa
     1141 gaagacaaaa aatcaccttg cgctaatgct ctgtatcagg tcactaatac cagctaagta
     1201 gttgattcat agtgactgca tatgttgtgc tttgtcgcat tttgtagtct attatttaat
     1261 ctgtaacaac gataatacaa tgaattttaa ttggtttttg tgattttgtc cttcttctga
     1321 catggaagga cacccgatgg atacccaacg attccaatcc caatttcatt ggcatttatc
     1381 gtttaaattt tctggcgcga tagcagcgtg cttgtctctg tctcttgtgg gaacagggct
     1441 tgctaatgct gatgattcgc ttccttccag taactatgcg ccgcccgccg ggggaacatt
     1501 ctttttgctt gctgacagca gttttagcag cagtgaagag gcgaaagtgc gactggaagc
     1561 gccggggcgt gattatcggc gctatcagat ggaagagtac ggcggcgtgg acgttcgcct
     1621 gtatcgtatt cctgacccga tggcattttt gcgccagcag aaaaacctgc atcgcattgt
     1681 ggtgcaaccg caatatctgg gcgacgggct gaacaatacg ctgacctggc tgtgggataa
     1741 ctggtacggc aaatctcgcc gcgtaatgca gcgtactttc tcttctcagt cacggcagaa
     1801 tgtgactcag gcattacccg aattacatct cggcaatgcc attattaaac cttcccgtta
     1861 tgtacagaac aaccagtttt ccccgctgaa aaaatatccc ttggtggaac agttccgtta
     1921 tccactatgg caggctaaac cggtcgagcc gcagcaaggg gtaaaactgg aaggcgcatc
     1981 cagcaatttc atctcgccgc agccgggtaa catttatatt cctctcggcc aacaagagcc
     2041 gggactgtac ctcgtcgagg cgatggttgg tgggtatcgg gcgacgacgg tggtgtttgt
     2101 ttccgatacc gtggctctta gcaaagtgtc aggcaacgag cttctggtgt ggaccgcggg
     2161 taaaaaacag ggtgaagcga agcccggctc agagatcttg tggactgacg gtcttggcgt
     2221 gatgacccgc ggtgtgaccg atgacagcgg taccttgcag ttacaacata tatcgccaga
     2281 acgttcatac attctgggta aggatgctga aggcggcgtt tttgtctccg agaacttctt
     2341 ctacgaaagc gaaatctaca acacccgctt gtatattttt accgatcgcc cgctatatcg
     2401 cgcaggcgat cgtgtcgatg ttaaagtgat gggccgcgag ttccacgatc cgttgcattc
     2461 atcccccatc gtcagcgccc cggcgaagct ttcggtgctg gacgctaacg gcagtctgtt
     2521 gcaaaccgtc gatgtcacgc tggatgcgcg caatggcggg cagggaagtt tccgcctgcc
     2581 agaaaatgcc gttgccggag gttatgagtt acgtcttgct taccgcaatc aggtctatag
     2641 cagcagtttt cgcgtggcaa actacatcaa gccacatttc gagattggtt tagctctcga
     2701 caaaaaagag ttcaaaactg gcgaagcggt cagcggcaaa ctgcaactgc tctacccgga
     2761 tggcgagccg gtaaaaaatg cccgcgtgca gttaagtttg cgcgctcagc aattatcaat
     2821 ggtcggtaac gatttgcgtt atgccggacg tttccccgtg tcgctggaag gcagcgaaac
     2881 ggtgtccgac gccagcggtc atgtggcgtt aaatctcccc gccgccgata aaccgagccg
     2941 ttatttgtta accgtctccg ccagtgacgg cgcggcgtat cgtgtcacca ccaccaaaga
     3001 gatcctcatt gaacgcggtc tggcgcatta ctcattaagt actgccgcac aatacagtaa
     3061 tagcggcgag tcggttgtgt tccgttatgc cgcgctggaa tcttcaaaac aggttcctgt
     3121 tacgtatgaa tggttgcgtc tcgaagaccg cacgagccat agcggagagc taccgtcagg
     3181 cggcaaatcc tttaccgtca atttcgctaa acctggcaac tacaatctga cattacgcga
     3241 taaagacggc ttaattctcg ctgggttaag ttatgccgtc agcggtaagg gcagcacggc
     3301 gcatacgggt acggtagata tcgtggcgga taaaacgctg taccagccag gcgaaaccgc
     3361 gaagatgctg attacctttc cggagccaat tgatgaagca ttattgacgc tggaacgcga
     3421 tcgcgtggaa cagcagtcgc tgctttcgca tccggcaaac tggctaacgc tacaacgttt
     3481 aaacgatacc cagtatgaag cccgggttcc agtgagcaat tcctttgcgc ctaacatcac
     3541 tttttcggtg ctgtataccc gtaatggtca gtacagtttt cagaacgccg ggatcaaagt
     3601 tgccgttcct cagcttgata tccgggtgaa aacggacaaa acccattacc agccaggtga
     3661 actggtcaat gtcgaattaa cctcgtcgct gaaaggtaaa cctgtttctg cgcagctaac
     3721 ggtaggcgtg gtcgatgaaa tgatctacgc gctgcaacca gaaatcgcgc cgaatatcgg
     3781 caaatttttc tatccgctgg ggcgtaacaa tgtgcgtacc agctccagtc tgtcgtttat
     3841 cagctacgac caggcgctct ccagcgagcc ggttgcgcct ggcgcaacta accgcagcga
     3901 gcggcgagta aaaatgcttg aacgtccacg gcgtgaagag gtggataccg cggcatggat
     3961 gccgtcactc acaaccgata aacaaggcaa agcgtatttc acgttcctga tgcctgattc
     4021 gttaacccgc tggcgtatca ccgcgcgtgg gatgaacggc gacgggctgg tcgggcaggg
     4081 gcgtgcttat ctgcgttcgg aaaaaaatct ctacatgaag tggagtatgc caacggtgta
     4141 tcgcgtgggc gacaaaccgg cggcaggact gtttatcttc agtcagcagg ataacgaacc
     4201 ggtggcgctg gtgactaaat ttgcaggcgc tgagatgcgc cagacgctga cgctgcacaa
     4261 aggggcgaat tatatttcgc tggcgcagaa tattcagcaa tctggcttgt taagtgcaga
     4321 actgcaacaa aatgggcaag tgcaggacag cattagcaca aaactgtctt ttgtggacaa
     4381 cagcaggccc gttgaacagc agaaaaatgt catgctcggc ggtggcgaga acgcgctgat
     4441 gttgcccgag caggcgagta atatccggct acaaagtagt gaaacgccgc aggagatttt
     4501 ccgcaacaat cttgatgcgt tagtcgatga accgtggggt ggggtgatca acaccggtag
     4561 ccgtctgatc ccgctcagtc tcgcctggcg ttcgcttgcc gatcatcaaa gtgccgccgc
     4621 taacgacatt cgtcagatga ttcaggataa ccgtctgcgg ctgatgcaac tggcggggcc
     4681 cggagcgcgc tttacctggt ggggtgaaga tggcaatggt gacgccttcc ttacggcatg
     4741 ggcatggtac gccgactggc aggccagcta ggcgctcggc gtaacgcaac aaccggaata
     4801 ctggcagcat atgctcgaca gttatgccga gcaggcggat aacatgccgt tattgcatcg
     4861 ggcgctggtg ctggcgtggg cacaggagat gaatctgccg tgcaaaacgt tgttgaaagg
     4921 gttggatgaa gctatcgccc ggcgcggaac taaagatgaa gatttctctg aggaagacat
     4981 ccgcgatatc aatgacagcc tgatcctcga tacaccggaa tctccactgg cagatgcggt
     5041 ggcaaacgtc ttaaccatga cgttgctgaa aaaagcgcag ttgaagtcca cggtgatgcc
     5101 acaggttcag caatatgcgt gggataaagc ggcaaacagc aatcagccgc tggcgcacac
     5161 ggttgtgctg ctcaatagcg gtggtgacgc tacccagacg gccgctattt taagtggttt
     5221 gaccgctgag caatccacta ttgagcgcgc gctggccatg aactggctgg cgaaatatat
     5281 ggcgacaatg cctccagttg ttttgcctgc gcctgcgggc gcatgggcta aacataagtt
     5341 aactggaggg ggcgaatact ggcgttgggt tggtcagggc gtgccggaca ttctctcttt
     5401 tggtgacgaa ttatcgccgc aaaatgtgca ggtccgctgg cgtgagccgg caaaaatggc
     5461 tcaacaaagt aacattccgg tgaccgttga acgccagttg tatcggctta tccctggtga
     5521 agaagagatg agctttattc tgcaaccggt gaccagcaat gagattgaca gcgatgcgct
     5581 gtatctcgat gacatcacgc ttaccagcga gcaggatgca gttctgcgct acggtcaggt
     5641 ggaagtaccg ctgccaccgg gagccgacgt tgagcgcaca acatggggca tttcggtcaa
     5701 taaacccaac gccgcgaaac agcaggggca attgctggaa aaagcgcgaa atgaaatggg
     5761 cgaactggcc tatatggtgc cggtgaaaga actgacggga acggtcactt tccgccattt
     5821 gctgcgcttc tcgcaaaaag ggcaattcgt tctgcctcct gctcgttatg tgcgttccta
     5881 tgcacctgca cagcaaagtg ttgcggcagg gagtgaatgg accgggatgc aggtgaaata
     5941 agtgaactgg cgcagaatcg tctggctatt ggcgttggtt actcagccaa cgcttgcgga
     6001 ggagacgccg ttacaactgg cactgcgtgg tgcgcagcac gatcaactgt atcagctgtc
     6061 gtcatcaggc gtgaccacag tctcagcatt acctgactcg ctcaccacgc cgttagggag
     6121 tttgtggaaa ctgtatgttt acgcctggct ggaggatacc catcaaccgg agcagcccta
     6181 ccagtgtcgc ggaaactccc cggaagaggt ttattgttgt caggctgggg agagcataac
     6241 gcgcgatacc gcgctggtac gttcctgtgg gctctatttt gcgccgcagc ggttgcatat
     6301 tggcgcagat gtgtgggggc aatactggca acagcgtcag gcgcctgcgt ggttagcgtc
     6361 tcttactacg ctgaagccag aaacctcggt aacggttaaa tcgctgcttg attcattagc
     6421 gacgttacct gcgcaaaaca aagctcagga agtcttactg gatgtggtgc tggacgaggc
     6481 gaaaatcggt gtcgcatcca tgctcggtag tcgggtacgg gtgaaaacct ggagctggtt
     6541 tgccgatgat aaacaggaaa tccgtcaggg tggttttgcc ggctggttaa ccgatggtac
     6601 accgctgtgg gttactggca gtggcaccag caaaacggta ctaacccgtt atgcgacagt
     6661 gcttaatcgg gttttgccag tgccgacgca ggttgccagt gggcaatgtg tagaggtgga
     6721 gctgtttgcc cgctatccgc tgaagaaaat cacagcggaa aagagtacga cggcagtaaa
     6781 acccggcgta cttaatgggc gctatcgtgt gacgtttact aatggtaacc acattacgtt
     6841 tgtcagccac ggtgagacga ccttactgag cgaaaagggc aaactgaaat tgcagtcgca
     6901 tctcgatcgt gaagagtacg ttgccagagt tctggatcgc gaggcgaaaa gtacgccccc
     6961 tgaggcagcg aaagccatga ccgtggcgat tcacactttt ttacagcaaa acgccaatcg
     7021 ggaaggcgat tgcctgacca tccccgacag cagcgccacg cagcgtgttt ctgcttcgcc
     7081 agcgaccacg ggggcgcgaa cgatgaccgc ctggacgcag gatctcatct atgcaggcga
     7141 tccggttcat tatcatggca gtcgagctac cgaagggaca ctttcctggc ggcaagccac
     7201 ggcccaggcg gggcagggag agcgttacga ccagatactc gcgtttgctt atcccgacaa
     7261 cagccttagc cgctggggag cgccacgctc aacctgccag ttattaccca aagcgaaagc
     7321 ctggctggcg aaaaaaatgc cgcagtggcg gcgtatatta caaggcgaga cggggtacaa
     7381 cgaaccagac gtgtttgcgg tctgtcgttt agtctcaggt ttcccctata ccgatcggca
     7441 gcagaaacgg ctgtttattc gtaacttctt tacgcttcag gatcggctgg atttaaccca
     7501 tgagtatctg cacctggcct ttgatggtta tcccaccggg cttgatgaga actatatcga
     7561 aacgctgacc cgacaattat taatggacta atgctatgcg aaagattttt cttccgttgt
     7621 tactggtggc actttcgcct gtcgctcaca gtgaaggtgt gcaggaagtc gagattgacg
     7681 caccgctctc tggctggcat ccggcagagg gcgaagatgc cagtttttca caatcgatca
     7741 attacccggc gtcgtccgtc aacatggcag atgatcaaaa tatctcagcg cagatccgcg
     7801 gcaaaataaa gaattatgct gcggcgggta aaattcagca gggccggctg gtggtcaacg
     7861 gtgccagtat gccgcagaga gttgaatccg atggttcatt tgcacgccct tatattttca
     7921 ctgaaggcag caacagcgtg caggtcatca gcccggatgg gcaaagccga caaaaaatgc
     7981 agttttactc aacgccgggt acaggaacga ttcgtgcacg tttacggctg gttctctcgt
     8041 gggatacgga caataccgat ctcgatctcc atgttgtcac gcccgatggc gaacacgcct
     8101 ggtacggtaa caccgtgctg aaaaacagtg gtgcactgga tatggatgtc acgacggggt
     8161 acggacccga gattttcgcc atgccagcgc cagttcacgg acgctatcag gtgtat
//
LOCUS       DAJVUP010000177         7912 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.177, whole genome shotgun sequence.
ACCESSION   DAJVUP010000177 DAJVUP010000000
VERSION     DAJVUP010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7912
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.177"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            159..952
                     /gene="dkgB"
                     /locus_tag="OQQ75_003653"
                     /pseudo
     CDS             159..952
                     /gene="dkgB"
                     /locus_tag="OQQ75_003653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414743.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgB"
     gene            complement(949..1863)
                     /locus_tag="OQQ75_003654"
     CDS             complement(949..1863)
                     /locus_tag="OQQ75_003654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1977835.1"
                     /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
                     LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP
                     VVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF
                     NSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLNTWPIACSDGQLHELKYGL
                     SSNSGETLKQLCLSGNGIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDR
                     AVSTRIRAFIDFLSEHVKTAPGGAVREA"
     gene            2104..2904
                     /locus_tag="OQQ75_003655"
     CDS             2104..2904
                     /locus_tag="OQQ75_003655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HCS1977836.1"
                     /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERI
                     RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
                     LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
                     SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD
                     DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK"
     gene            2935..3531
                     /locus_tag="OQQ75_003656"
                     /pseudo
     CDS             2935..3531
                     /locus_tag="OQQ75_003656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308233.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(3580..4938)
                     /gene="mltD"
                     /locus_tag="OQQ75_003657"
     CDS             complement(3580..4938)
                     /gene="mltD"
                     /locus_tag="OQQ75_003657"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase D"
                     /protein_id="HCS1977837.1"
                     /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA
                     RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM
                     YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY
                     DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF
                     WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD
                     MAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRDSLASGEIAAVQSTLVAD
                     NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQR
                     LANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMP
                     DS"
     gene            complement(5010..5765)
                     /gene="gloB"
                     /locus_tag="OQQ75_003658"
     CDS             complement(5010..5765)
                     /gene="gloB"
                     /locus_tag="OQQ75_003658"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HCS1977838.1"
                     /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNW
                     QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF
                     SVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLNKLSALPDDTL
                     VCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR
                     TEDIDLINVINEETLLQQPEERFAWLRSKKDRF"
     gene            5799..6521
                     /locus_tag="OQQ75_003659"
     CDS             5799..6521
                     /locus_tag="OQQ75_003659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308236.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1977839.1"
                     /translation="MKPARVPQTVVAPDRWGDLPWGELYRKALERQLNPWFTKMYGFH
                     LLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPW
                     CTDPHRLLRETDRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQL
                     DWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQ
                     SKNKPRIRQAVGATRQCRKPQA"
     gene            complement(6518..6985)
                     /gene="rnhA"
                     /locus_tag="OQQ75_003660"
     CDS             complement(6518..6985)
                     /gene="rnhA"
                     /locus_tag="OQQ75_003660"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HCS1977840.1"
                     /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTN
                     NRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD
                     LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV"
     gene            7050..7781
                     /gene="dnaQ"
                     /locus_tag="OQQ75_003661"
     CDS             7050..7781
                     /gene="dnaQ"
                     /locus_tag="OQQ75_003661"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HCS1977841.1"
                     /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT
                     GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF
                     DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT
                     LHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT
                     DEELAAHEARLDLVEKKGGSCLWRA"
BASE COUNT         1983 a         1924 c         1901 g         2104 t
ORIGIN      
        1 tattaagaag cctcgagtta acgctcgagg tttttttcgt ctgtatatct attattgcca
       61 gaatcgcaaa aatcctctgc attttacgct tttttcctca acagtctgaa gcccataatc
      121 acctcagtta acgaaaatag cattaaaaga ggcatattat ggctatccct gcatttggtt
      181 taggttgaaa gactacgttg ttatttcatc tgtgaaaacg gcgcttgaac ttggttatcg
      241 cgcaattgat accgcacaaa tctatgataa cgaagccgca gtaggtcagg cgattgcaga
      301 aagtggcgtg ccacgtcatg aactctacat caccactaaa atctggattg aaaatctcag
      361 caaagacaaa ttgatcccaa gtctgaaaga gagcctgcaa aaattgcgta ccgattatgt
      421 tgatctgacg ctaatccact ggccgtcacc aaacgatgaa gtctctgttg aaggggttat
      481 gcaggcgctg ctggaagcca aaaaacaagg gctgacgcgt gagatcggta tttccaactt
      541 cacgatccca ttgatggaaa aggcgattgc tgctgttggc gctgaaaaca tcgctactaa
      601 ccagattgaa ctctctcctt atctgcaaaa ccgtaaagtg gttgcctggg ctaaacagca
      661 cggcatccat attacttcct atatgacgct ggcgtatggt aaggccctga aagatgaggt
      721 tattgctcgt atcgcagcta aacacaatgc gactccggca caagtgattc tggcgtgggc
      781 tatgggggaa ggttactcag taattccttc ttctactaaa cgtaaaaacc tggaaagtaa
      841 tcttaaggca caaaatttac agcttgatgc cgaagataaa aaagcgatcg ccgcactgga
      901 ttgcaacgac cgcctggtta gcccggaagg tctggctcct gaatgggatt aagcctctct
      961 gacagctcct ccgggagctg tttttacatg ctcgctaagg aaatcgataa aagcccggat
     1021 gcgcgtactt accgcacggt cgctgtaata gacggcactg aatggcattt ccactggcaa
     1081 cactttatct gccattaact ccaccaattc tccgcgagcg atttctctgt cgatcatgta
     1141 gtcggacaaa cacgcaatcc cgttgccact caggcaaagc tgtttcagtg tttccccact
     1201 attggatgac aaaccgtatt tcagctcatg taattgtcca tcactacagg ctatcggcca
     1261 ggtattgagg gaagcgggtt cagtgaatcc caggcaaaca tgttgcttta aatcgtcgat
     1321 cgtttctggc ttcccgtagc gggaaatata atcgggggag gcgataattt ttcgataact
     1381 gttaaataac ggcctggcac gtaagctgga atccgttaac gtaccagcgc gtatcgcgac
     1441 atccactttt ctttcgatca aattaataat cgtttcggag gagactagcg acaaagtgac
     1501 ttccggatag cgttcacgga aaggcttaat taacggcatc agaaagtgca gcaccactgg
     1561 agttgcggca tcgatccgta acagtccacg cggtgtatta cgcgtctcca taatttctga
     1621 ttctgccgct gccatctcct gcaaaattga ctgtacgcga cgaaaataac gctcgccttc
     1681 ttccgtcagg ctaagttgtc gcgtggtccg attaagcagg ctaacgccaa gtttcatctc
     1741 cagctttttc accgcccggc ttaccgctga gtttgcttgc cctaattgtt ccgctgcccg
     1801 gctaaagctg ccgctttcga cgaccgaaac aaaaatggcg agttcttccg acgtggcttt
     1861 catttttgct cctgttgcaa aatagaagag atattttgaa tttatttgtc attaaaccat
     1921 caggatgcgt gatatgtcat gcgatttaat gttctccata atgagcaaaa ttctgaccgg
     1981 tgtaagcact tgcttacata acaatataca attgctcgtt gaaagagtga gctaaaatcc
     2041 ctataatagt agaaccctcc cgagtgcgga agggttgacg taatagaggt ttcaaagtca
     2101 aaagtgcgaa aaaacaccta tgccatgcgc tatgttgccg gacaacctgc ggaaaggatc
     2161 ttaccgccgg ggtcttttgc gagcatcggc caggcattac cacctgggga accgttaagt
     2221 accgaagagc gtattcggat cctggtgtgg aacatataca aacagcaacg cgctgaatgg
     2281 ttgtcggtat taaagaacta cggcaaagat gcacacctgg tgttattgca ggaagcgcag
     2341 acaacgccag agttagtaca gtttgcgacc gctaactatc ttgccgccga tcaggtaccc
     2401 gctttcgtgc tgccacaaca tccttctggc gtaatgaccc tttcggcggc acatccagtg
     2461 tattgctgcc cgttacgtga acgagaaccc attttgcgtc tggcgaagtc ggcactggtg
     2521 acggtctatc cattacctga cacccgcctg ttgatggtgg ttaatataca cgccgtcaac
     2581 ttcagtctgg gcgtggatgt ctatagtaag cagttacttc ctattggtga tcagatagct
     2641 caccacagcg gcccggtcat tatggcggga gatttcaatg cctggagccg tagaaggatg
     2701 aacgcgttat atcgctttgc gcgggaaatg tcgctgcgcc aggtgcgttt taccgatgat
     2761 cagcgccgtc gggcgtttgg tcgcccgctc gattttgttt tctaccgtgg tctgaacgtc
     2821 agtgaagctt ctgtactggt tacgcgcgct tccgatcaca atccgctact cgttgaattc
     2881 agtcccggca agcctgataa ataaggtatg tcaggtctgc cacagggcag accaacgttt
     2941 ggcgctgcgc aaaacgtgag cgcggtggtg gcgtatgact tatcggccca catgctggat
     3001 gtcgtggcac aagctgccga agcccggcaa ctgaaaaata tcaccacccg ccagggatat
     3061 gccgcaagtc tgccatttgc cgataacgca tttgatattg ttatcagccg ttattctgcc
     3121 catcactggc atgatgttgg tgcagcactg cgagaagtga ataggatatt gaaacctggc
     3181 ggtaggctga ttgtgatgga tgtaatgtct ccgggtcacc cagtgcgcga catctggtta
     3241 caggcggtag aagcattacg cgatacctct cacgtacgaa actacgccag cggtgcgtgg
     3301 ttgacgttaa tcaatgaagc caatcttata gttgataatt taattacaga taagttaccg
     3361 ctggaatttt cttcatgggt cgtgagaatg cgtacgccag aagcgttagt agacgctatt
     3421 cgcatttacc aacagagcgc atcgacagag gtgagaacgt atttttcctt gcagactgat
     3481 ggctctttca ccagtgatat catcatggta gaagcgcata aagcggcata aataaaaaag
     3541 gcaccggggg aatcggtgcc ttttttatta tctggtttgt caggaatctg gcatgttgtt
     3601 gtttttcaca aacaacgtca gcttatcgcc tggttgcaga ttcgcagtgt cactgttcca
     3661 gcgcatcaca tctttgatgt tcacgccgtg gcgtttagca atgcttgaaa gcgaatcgcc
     3721 tttgcgcaca cgatacgtaa tgctatcgct gttgtttgcc aaccgctgtg cgctactgcc
     3781 tgcaccaatc gtcaaacttt ggcctggctt cagcttagat ccgcgcagtt tgttccactg
     3841 ctgcaaatct ttggtgctta cgccgagacg tgaagcgatg cttgaaagcg tgtcgccaga
     3901 gcgtacggtg taaacacggc tgttaagcgg cgtattgtcg gcaaccagcg tcgactgtac
     3961 agcagcaatt tcgcctgaag cgagagaatc acgcagttga tctgcatgct tctttggcac
     4021 catcacgtac tgcgggccac ttgcgcccag cgtggagcct tttacgccag cgttgaatgt
     4081 cttcagcttg ctgacggaaa tccccgccat atctgcaacc ttcgccattt caaccgggct
     4141 gctcaggtgc acacgcgcca gagcacggct ttcatcggtc gttggcagac gtacgccata
     4201 acgcttgctg tttttgagaa tatcactcaa tgccagcatt ttaggcacgt actgcttcgt
     4261 ttcctgcggc aacggtaacg accagaagtc cgtggatttc ccacgcgctt tgttcgtttt
     4321 aattgccttc atgacccgac cttcgccgct gttataagcc gctacggtca gaagccagtc
     4381 gccgtcaaac atcttgttca gacgctgcat catgttcagc gcggcagttg ttgaagcaac
     4441 aacatcgcga cgcgcgtcat aattgcgggt ctgtttcaaa ccataattgc gccccgtgct
     4501 cggaatgatc tgccagatgc ctgcggcatt ggcgccagac gttgcgtgag gatcaaaagc
     4561 gctctccact atgggtagta gtaccagttc cataggcatg ttacgttttt taacttgccc
     4621 tgctatccag tacatatacg gctctgcccg taaagttaca tcgtggagat agctcttatt
     4681 gcgtaaatat ttctgtttct gttcgcgaat ccggtcattt tccggaattc ccatctttag
     4741 ctcgtcgcca atgaaagccc acaagtcacc atctggcgcg atagacgtcc catcgtccat
     4801 ccatcgtgcc tgacttgtaa actttgctgc ttccccttga ccagctgcag aaaggctctg
     4861 tgcgtgctgt tgaacgttgc cggtactctg gcaacccacg agcaggacag aggcgagtaa
     4921 tatcgctttt gccttcatgt gtgtgtcaat agttgcttaa aagacgaccg atcataacgg
     4981 cgaacggagc cgatgacaag aaagttttat cagaacctat ctttctttga ccttaaccat
     5041 gcaaaacgct cttcaggttg ttgcaataat gtttcttcat taattacatt aattaaatca
     5101 atatcttccg ttcttaaaaa aacattaatt tgccgctcat ttttcagaat tacgggtagt
     5161 gttatttgat tttttgcccg taactcctta actttacgat aataatcatt tatggacaaa
     5221 tcgtgcggaa gaatactcaa agcaaacttc atatttgata acgtatattc atgagcacaa
     5281 cataccaatg tatcgtcagg taacgcactt aacttattaa gtgattgata catttgtgat
     5341 gctgtccctt caaacaacct accacaccca ccagaaaaca gcgtgtcgcc gcaaaataga
     5401 taaggtttac tgaagtaaca gatatgtcct aaagtgtgac ccggtgtggc aattacacta
     5461 aattcatgcc ccaaaacgaa ggcagtttcg ccatctttga ctacctgtgt tgttccctta
     5521 tcttgtgtct cttgtggacc atacaccaca atttgcggaa acttttccac cagttctttt
     5581 acgccgccaa cgtgatcgtg atgatggtgg gtgagaaata tggcctccgg ttgccagtta
     5641 ttggcggcaa tggcgtttaa tactggctct gcgtctccgg gatcgacaat caggcagcga
     5701 cctgcttcat cattcaaaac ccagatgtaa ttgtcatcaa aggcgggaat actgttaaga
     5761 ttcatagatt acctcttagt gtgaaacgga aggttgtgat gaaaccggca agagtccctc
     5821 aaactgtcgt ggctcctgat cgctggggcg atttgccctg gggagagctt tatcgcaagg
     5881 cgctggagcg ccagctcaac ccgtggttca ctaaaatgta tggttttcat ctgcttaaga
     5941 ttggcaattt aagcgcagaa atcaattgcg aagcgtgcgc ggtttctcat caagtgaatg
     6001 tttctgcgca aggaatgccc gtccaggtgc aggcggatcc acttcatctt ccttttgccg
     6061 ataaatccgt tgatgtttgt ctactggcac atacattgcc gtggtgcacc gatccgcatc
     6121 gtttattgcg tgaaaccgat cgggtattga ttgatgatgg ctggctggtg attagtggct
     6181 tcaatcccat tagtttaatg ggattacgca aacttgtgcc ggtattgcga aaaacctcgc
     6241 cctataacag ccggatgttt actctgatgc ggcaactgga ctggctctct ttgttgaatt
     6301 ttgaagtgct gcacgccagc cgtttccacg ttctcccgtg gaacaaacac ggaggaaaac
     6361 tattgaatgc gcatattcct gcgcttggtt gcttacaact tattgttgcc cggaaacgga
     6421 ctattccttt aacgctaaac ccgatgaaac agagtaaaaa caagccacga attcgccaag
     6481 cggttggagc cacccggcaa tgtcgtaaac cacaagctta aacttcgact tggtagcccg
     6541 tatcttccag tgtgggattc attgccgcag cacgagccag ttcatcacag cgttcgtttt
     6601 ccgggtgtcc ggcatggcct ttaacccatt cccatttgat ttgatgttgc cctagggcag
     6661 catcaagacg ttgccagaga tcgacatttt ttactggttt tttgtctgcg gttttccagc
     6721 cacgtttttt ccagttatgg atccactggg tgataccctg gcggacatac tggctgtcgg
     6781 tactcaaaat gacttcgcaa tgttctttta acgcctccag cgcgacaata gcggccatca
     6841 actccatacg gttgttggtg gtgcgggtgt agcctgcgct aaaggttttc tcgcgtccgc
     6901 gatagcgtaa aatagcgccg taacccccag gtcctggatt gcccagacac gaaccatcgg
     6961 tgaaaatttc tacctgttta agcatctctg gtagacttcc tgtaattgaa tcgaactgta
     7021 aaacgataag tctgacataa atgaccgcta tgagcactgc aattacacgc cagatcgttc
     7081 tcgataccga aaccaccggt atgaaccaga ttggtgcgca ctatgaaggc cacaagatca
     7141 ttgagattgg tgccgttgaa gtggtgaacc gtcgcctgac gggcaataac ttccatgttt
     7201 atctcaaacc cgatcggctg gtggatccgg aagcctttgg cgtacatggt attgccgatg
     7261 aatttttgct cgataagccc acgtttgccg aagtagccga tgagttcatg gactatatcc
     7321 gcggcgcgga gttggtgatc cataacgcag cgttcgatat cggctttatg gactacgagt
     7381 tttcgttgct taagcgcgat attccgaaga ccaatacctt ctgtaaggtc accgatagcc
     7441 ttgcggtggc gaggaaaatg tttcctggta agcgcaacag cctcgatgcg ttatgtgccc
     7501 gctacgaaat agataacagt aaacgaacgc tacacggggc attactcgat gcacagatcc
     7561 ttgcggaagt ttatctggcg atgaccggtg gtcaaacgtc gatggctttt gcgatggaag
     7621 gagagacaca gcagcaacaa ggtgaagcaa caattcagcg cattgtacgt caggcaagta
     7681 agttacgcgt tgtttttgcg acagatgaag agcttgcagc tcatgaagcc cgtcttgatc
     7741 tggtggagaa gaagggcgga agctgcctct ggcgggcata aatacctgta aaaggcgcta
     7801 aaaatagcgg cttgggcgat ttttgcagca aacgattcaa aagatgagaa aaaccgttga
     7861 cgaagggtga ggcaatccgt aatattcgcc tcgttcccaa cggaacacaa cg
//
LOCUS       DAJVUP010000178         7846 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.178, whole genome shotgun sequence.
ACCESSION   DAJVUP010000178 DAJVUP010000000
VERSION     DAJVUP010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7846
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.178"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(311..889)
                     /gene="mocA"
                     /locus_tag="OQQ75_003662"
     CDS             complement(311..889)
                     /gene="mocA"
                     /locus_tag="OQQ75_003662"
                     /EC_number="2.7.7.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor cytidylyltransferase"
                     /protein_id="HCS1977842.1"
                     /translation="MSAIDCIITAAGLSSRMGQWKMMLPWQQGTILDTSIKNALQFCS
                     RIILVTGYRGNELHERYVNQSNITIIHNPDYAQGLLTSVKAAVPAVQTEHCFLTHGDM
                     PTLTIDIFRKIWSLRNDGAILPLHNGIPGHPILVSKPCLMQAIKRPNITNMRQALLMG
                     AHYSVEVENAEIILDIDTPDDFITVQKRYTKI"
     gene            992..1762
                     /gene="yqeC"
                     /locus_tag="OQQ75_003663"
     CDS             992..1762
                     /gene="yqeC"
                     /locus_tag="OQQ75_003663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311776.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium-dependent hydroxylase
                     accessory protein YqeC"
                     /protein_id="HCS1977843.1"
                     /translation="MKSIVDPSALFIDLGAQKRPTVISVVGAGGKTSLLFWLAELLQA
                     SGRRVLITTTTHMFMPTSHWPVVFCRDPAMLPHASLTSPISFCFHSWKANQGKVQGFT
                     PEAIDALVQRPECDVILIEADGSRAMPLKAPDEHEPCIPKSSCCVIAVMGGHILGAKV
                     STENVHRWSQFADITGLTPDATLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQC
                     ENAIAQSELLQPLQQHDVEAIWLGDIQEHPAIARRFVN"
     gene            1810..3435
                     /locus_tag="OQQ75_003664"
     CDS             1810..3435
                     /locus_tag="OQQ75_003664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF2563 family selenium-dependent molybdenum
                     hydroxylase system protein"
                     /protein_id="HCS1977844.1"
                     /translation="MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSI
                     VGTIGGGMVERKVIEESLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGM
                     RPRLVLIGAGHVNRAIAQSAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAV
                     EALDIRPDNFVLIATNNQDREALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEE
                     HIARLHAPVGYNIGAETPQEIAISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGA
                     GDIASGVALRLYHAGFKVIMLEVEKPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSA
                     EAMKLTERGFIPVMVDPACSLLDELKPLCVVDAILAKQNLGTRADMAPVTIALGPGFT
                     AGKDCHAVIETNRGHWLGQVIYSGCAQENTGVPGNIMGHTTRRVIRAPAAGIMRSNVK
                     LGDLVKEGDVIAWIGEHEIKAPLTGMVRGLLNDGLAVVGGFKIGDIDPRGETADFTSV
                     SDKARAIGGGVLEALMMLMHQGVKATKEVLEVA"
     gene            complement(3476..4408)
                     /gene="arcC"
                     /locus_tag="OQQ75_003665"
     CDS             complement(3476..4408)
                     /gene="arcC"
                     /locus_tag="OQQ75_003665"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HCS1977845.1"
                     /translation="MSKKIVLALGGNALGDDLAGQMKAVKITSQAIVDLIAQGHEVIV
                     THGNGPQVGMINQAFEAAAKTEAHSPMLPMSVCVALSQGYIGYDLQNVLREELLSRGI
                     NKPVATLVTQVEVDANDPAFLNPTKPIGSFFTEQEAEQLTKQGYTLKEDAGRGYRRVV
                     ASPKPVDIIEKETVKALVDAGQVVITVGGGRIPVIREGNHLRGASAVIDKDWASARLA
                     EMIDADMLIILTAVEKVAINFGKENEQWLDRLSLSDAERFIEEGHFAKGSMLPKVEAA
                     ASFARSRAGREALITVLSKAKEGIEGKTGTVICQ"
     gene            complement(4456..5841)
                     /gene="hyuA"
                     /locus_tag="OQQ75_003666"
     CDS             complement(4456..5841)
                     /gene="hyuA"
                     /locus_tag="OQQ75_003666"
                     /EC_number="3.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311773.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-phenylhydantoinase"
                     /protein_id="HCS1977846.1"
                     /translation="MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEI
                     DATGCYVFPGGVDVHTHFNIDVGIARSCDDFFTGTRAAACGGTTTIIDHMGFGPNGCR
                     LRHQLEVYRGYAAHKAVIDYSFHGVIQHINHAILDEIPMMVEEGLSSFKLYLTYQYKL
                     NDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAE
                     AIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYD
                     TEDGMKFILSPPLRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCP
                     NGLPGVENRMQLLFSSGVMTGRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVV
                     IIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIFCDGTFTGKAGRGRF
                     LRRKPFVPPVL"
     gene            complement(5894..6934)
                     /locus_tag="OQQ75_003667"
     CDS             complement(5894..6934)
                     /locus_tag="OQQ75_003667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgeY family selenium metabolism-linked
                     hydrolase"
                     /protein_id="HCS1977847.1"
                     /translation="MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHR
                     IKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGME
                     TDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYII
                     EQSGIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPIL
                     GELQELSQRLGYDEFLGKGTLTVSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGAL
                     DEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEEDHFTVKALVTCAAM
                     YAAIPLSWLATE"
     gene            complement(6992..>7846)
                     /locus_tag="OQQ75_003668"
     CDS             complement(6992..>7846)
                     /locus_tag="OQQ75_003668"
                     /EC_number="4.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopropionate ammonia-lyase"
                     /protein_id="HCS1977848.1"
                     /translation="FATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLG
                     AECIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQ
                     MREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGD
                     IVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDP
                     RIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEGDTDVKHYREVVW
                     EGKHAVAP"
BASE COUNT         1853 a         1910 c         2059 g         2024 t
ORIGIN      
        1 tagcttatac agatatcatt gagtgaccgg tgttgagaaa tccggtggtt tagggggata
       61 gagcaacaat cgcaccactc ttgccaggtt tggcgggaaa tataaaaaaa tgtgaggcgg
      121 ctcgaaactt aagggctttt tgtgaatgaa ctcacaggtg ctaaatgaga attaaaatca
      181 ctcctgaaaa ttattattgc cagcccatat atcacttttt ctcttttctc aaaatcagtg
      241 attccttatc attatgataa agagtgctgg agggattaaa tatttgaacg caatcgttta
      301 actacgtttt ttaaatttta gtataccttt tttgcactgt aataaagtcg tccggagtat
      361 caatatctaa aattatttct gcattttcta cttcgacgga ataatgagct cccataagga
      421 gtgcctgacg catattggtg atattggggc gcttgattgc ctgcatcagg catggttttg
      481 acactaaaat cggatggccg gggatgccat tatggagtgg cagtattgcg ccatcatttc
      541 gtaacgacca gatttttctg aaaatatcga tggtgagggt tggcatgtca ccgtgggtga
      601 gaaaacaatg ttctgtttgc actgcgggta ctgcggcctt tactgatgtt agtaaaccct
      661 gcgcataatc tgggttgtgg ataatagtga tattgctctg gttcacataa cgttcgtgca
      721 gttcattacc acgatagccg gtgactaaaa taattcggct acaaaactgc aacgcatttt
      781 tgatacttgt atcaagaatt gtcccctgtt gccagggtaa catcattttc cattgcccca
      841 ttcttgatga taatccggca gcggtaatta tacagtcgat ggctgacata gtggttccat
      901 tatttatagg ggctaataac gcctgataat tgcgttactt cctgatggat taagttgggg
      961 ataatttatc ccagagaggt cataaagact cgtgaaaagt atagttgacc catcggcatt
     1021 attcattgat ttaggtgcgc agaaacgtcc cactgtgatt tctgttgttg gtgctggggg
     1081 gaaaaccagc ttgctttttt ggctggcaga actgctccag gctagcggca ggcgtgtgtt
     1141 aatcacgacg acaacacata tgtttatgcc aacgtctcac tggcccgtgg ttttctgtcg
     1201 tgatcccgcc atgcttcctc atgcgtctct tacatccccc atttcatttt gttttcacag
     1261 ctggaaagcg aaccagggaa aagtgcaggg atttacgcca gaagcgattg atgcactggt
     1321 gcaacgacca gagtgtgacg taattctcat tgaagcagat ggctcgcgtg caatgccgtt
     1381 aaaagcgcct gatgagcacg aaccttgcat acccaaaagc agttgctgcg tgattgctgt
     1441 gatgggagga catattttgg gcgcgaaagt gagcacagaa aatgtccatc gctggtcgca
     1501 gtttgctgat attactgggt taacacctga tgcaaccttg caactgagcg atctcgttgc
     1561 gctggttcgc caccctcagg gggcgtttaa aaacgtaccg caaggttgtc ggcgagtctg
     1621 gttcattaac cgtttttctc aatgtgagaa tgcgattgca caaagcgagc tccttcaacc
     1681 gctgcaacaa cacgacgtag aggcaatctg gctaggcgat atacaagaac atcctgcaat
     1741 cgcgcgcaga tttgtgaatt agcggcccgg gtattccggg ttactgaaag gatatccatt
     1801 gaggttggta tgaatatttt cacagaggct gcaaaactcg aagagcaaaa ttgtccgttt
     1861 gcgatggcgc aaattgttga tagccgaggc tcgactcccc gccattctgc acaaatgtta
     1921 gtgcgcgccg atggttctat cgtcggtaca attggtggcg gaatggttga gcggaaggtg
     1981 attgaagagt cacttcaggc attgcaggaa cgtaagccgc gattattcca tggacgtatg
     2041 gctcgtaacg gtgcggatgc tgtcgggtca gattgtggag gtgcaatgtc agtatttatc
     2101 agcgtccatg gtatgcgtcc acgtctggtg ttgattggcg cggggcatgt caaccgggcg
     2161 atagcccaga gtgccgcgct attaggattt gatattgccg ttgccgatat ttatcgcgaa
     2221 agcctcaatc ctgaactatt cccaccatca accacgcttc tccatgctga gtcgtttggt
     2281 gcggcagtgg aagcactgga tattcgccct gataattttg tcctgattgc cacgaataat
     2341 caggatcgtg aagccctcga caaactcatt gaacagccca ttgcatggtt ggggttgctg
     2401 gcaagtcgcc gcaaggttca gcttttcctg cgtcaattgc gtgagaaagg cgtggctgaa
     2461 gaacatattg cccgtttaca tgcgcccgtt ggttacaaca taggtgcgga aacgccgcag
     2521 gagatcgcca tcagcgtgct ggcagaaata ttacaggtga aaaataacgc gccgggtggg
     2581 ctgatgatga aaccttctca tccttccgga caccagctgg tggtgattcg cggtgcggga
     2641 gatatcgcca gtggtgtggc gctacgtctg tatcatgcgg gttttaaagt gatcatgctg
     2701 gaagtggaaa aaccgacagt gattcgttgt accgtggcgt ttgcccaggc cgtgttcgat
     2761 ggcgaaatga cggtcgaagg cgtcactgct cgcctggcaa ccagctctgc ggaagcgatg
     2821 aaacttaccg aacgcggatt catccctgtg atggtagatc ccgcctgttc attgcttgat
     2881 gaactgaaac cgctttgcgt ggtggacgct attctggcga aacagaattt gggaacgcgg
     2941 gcagatatgg caccagtaac aatcgcgctt gggccgggct ttactgcagg gaaggattgt
     3001 catgcggtaa ttgaaacaaa tcgcgggcac tggctcggtc aggtgattta ctctggttgt
     3061 gcgcaggaga ataccggtgt tcctggcaat attatggggc ataccacccg acgggtgatc
     3121 cgtgctcctg ctgcaggcat tatgcgatcc aacgtgaaat taggcgatct ggtgaaagag
     3181 ggcgatgtga ttgcctggat tggtgagcat gaaattaaag caccgttgac ggggatggtg
     3241 cgtggcttgt tgaacgacgg cctggcagtg gttggtggtt ttaaaattgg tgatatcgat
     3301 cctcgtggtg aaaccgctga tttcaccagc gtttctgata aagcccgggc gattggcggc
     3361 ggcgtacttg aggcgttaat gatgttgatg catcagggcg tgaaagcgac aaaagaagtg
     3421 ctggaagtgg cttaaatgaa aatggccgga tggtattacc cacccggcct taaaattact
     3481 gacaaatcac cgttccggtt ttgccttcaa tcccttcttt cgctttgctc aatacggtaa
     3541 tcagtgcttc acgacctgcg cgagagcgag caaacgaggc ggcagcttcc actttaggca
     3601 gcatagaacc tttcgcaaaa tgaccttctt cgataaagcg ttcagcatca cttaatgaca
     3661 ggcgatcgag ccactgttca ttctctttac cgaagttaat ggccactttt tctaccgcag
     3721 tcagaatgat cagcatatcg gcatcaatca tttctgctaa acgggcgctg gcccagtctt
     3781 tatcgataac cgcgctggca ccacgcagat ggttaccttc acgaataaca gggatacgac
     3841 caccgccaac ggtgatcacc acctggcctg catctaccag agctttaaca gtttcttttt
     3901 caatgatatc aaccggtttt ggcgaggcaa caacacggcg atagccgcga ccagcatctt
     3961 ctttcagagt gtaaccctgt tttgtcagtt gctctgcttc ttgctcggta aagaacgaac
     4021 cgatcggctt ggtcgggttg aggaatgccg gatcgttagc gtcgacttcg acctgagtaa
     4081 ccagcgttgc tacaggttta ttaatgcccc gagaaagcag ttcttctctt aacacgtttt
     4141 gtagatcgta accaatataa ccctggctta aggcaacaca gacagacatc ggcagcattg
     4201 gcgagtgtgc ttcagttttt gcggcagctt caaaggcctg gttaatcatg cccacctgcg
     4261 gcccgttacc atgagtgacg ataacttcat gtccttgggc aattaaatca acaattgcct
     4321 gagaagtaat ttttaccgct ttcatttgtc cggccaggtc atcgcccagc gcattcccgc
     4381 ccagggcgag aacaattttc ttactcattt ttcctcactc atcattcttg attgtgtata
     4441 gatccctgac agtggttaga gcacgggagg gacaaacggt ttgcgtcgca ggaaacgacc
     4501 tcgcccggct ttgcctgtaa aggtgccgtc acagaaaatc gtttcaccac gggataaggt
     4561 tctgacaatc gcgccctgac aggtaaaacc ctcccatggc gagtagtcgg cgttgtcgtg
     4621 gagatggcga tgctgaattt gttggctctg acgtgggtcg ataatcacca cgtcgccatc
     4681 ggaaccgggc gctaataatc ctttttgcgg ccacaggcca aacagcctgg cgggcattgc
     4741 gctggttaat tcaacaaagc gttccggtgt tatacgtccc gtcatcacgc cactggaaaa
     4801 cagtaactgc atgcggtttt ccacaccggg taagccattt gggcagcgac tgaaatcgcc
     4861 tttagaaatt tgcaggcgtt gagccatcga gaaggtgcag tgatcggtcg ccaccacgtc
     4921 aatcgcacca tcgctgatgc cacaccacag tttgtcctgc tcgcgtacgt tacgcagcgg
     4981 tgggctaaga atgaacttca tgccatcttc tgtatcgtaa ctgcgttcgt ccaacaggag
     5041 atattgtggg caggtttcaa cccagactgg ctggtgattc gcacgggcaa gacgcagata
     5101 atccagacct aagccgttag acaggtgcac gatatagagc ggggcgttac cggcaatttg
     5161 tgccaggtta atcatgcggg cgatggcttc cgcttcgcat tccagagggc gactcaaggc
     5221 atgatagcgc ggcgcggtta accctgcggc gataaattcc gcccgcttgc tggcgatagc
     5281 cgcatcattt tccgggtgca cggtggtcag cgcgccggat tcatgcaagc ggcgtaatgc
     5341 ctgcaaaacc tcgtcatcgt tgagtttgta ttgataggtt aaatagagtt taaaactgct
     5401 cagtccttcc tcgaccatca tcgggatttc gtcgaggatt gcgtgattaa tgtgctggat
     5461 cacaccgtga aagctgtaat cgatgaccgc tttatgggcg gcataaccac gataaacctc
     5521 cagttgatgg cgtaaccgac agccgtttgg gccaaatccc atatggtcaa taatggttgt
     5581 tgtaccgcca cacgcagctg cgcgggtacc ggtaaaaaaa tcatcacaac tgcgcgcgat
     5641 gccgacatca atattgaaat gcgtatggac atccacgccg cctgggaaaa cgtaacagcc
     5701 agtggcatca atttcttcat acgggagctg cggcgaaata ttgttgccca actggcgaac
     5761 aatcccgctt tcaatcagca aatcctgttt ggcttgtcca tctgcgttaa cgacagtgcc
     5821 gtttttgatc aatacgcgca tagcaaactc caaaaaccct ccggcgaacc ggaggggaat
     5881 aagtgaagag taattactct gttgccagcc agcttaacgg gattgcagcg tacatcgcgg
     5941 cacaggtcac cagtgcttta acggtgaagt gatcttcttc cactttccag gtcgggaagt
     6001 agcattcggt tgggtaaacc aggccagtcc aggacggacg gtcgtagttg tacatagaaa
     6061 caaccgcgtt agctttctgt actgcaggca gggcgcggat ttcgtccagc gcgccttccc
     6121 aggtttcgcc ccaggtcaga cggcggtcaa tagagacggc gcagctatct gctacagcgc
     6181 aacggcttgg ggatgtgaag aagatttcag aaacggtgag ggtgcctttg ccgaggaatt
     6241 cgtcataacc cagacgttgg gagagttctt gtaattcgcc aagaatcgga cccattttga
     6301 aaatggcgtt gtcaccgcgt tctggcgcag aaccgtggca gctaacaccc tgaacatcaa
     6361 tacgaatttc catacgaccg cgctgaccac ggtatatctg gcagtcggtt ggttcggtac
     6421 tgaccacaaa ttccgggcga atgccggatt gttcaataat gtactgccag cacagaccgt
     6481 cgcagtcttc ttcctgcaca gtaccggtaa ccagcagggt atattcatct tccagaccga
     6541 ggtctttaat gattttaccg gcataaacca tagatgccat gccgccttcc tggtcggaag
     6601 taccgcgacc accgattagc tcatcagttt ccatgccttc gtacggatcg aagtcccagt
     6661 ttttgatgtt gccaatgccg acggtatcga tatgagcgtc cattgccacc agacgcgggc
     6721 cgtggccgat ataaccgaga acgttgccca tcgggtcgat ttcaacttta tcgaagccga
     6781 ctttttccat ctcttcttta atacgatgta ctacgcgttt ttcgtcgcag ctttcactgg
     6841 gaatagcaac catgtcgcgc aggaagcgag tcatgtccgc ctggtaatct tttgcttttt
     6901 caagaatcag tttgaatgga atattcttag ccattatttt tctccagatt ttttactccc
     6961 cgttttgcag ggagtagttc caatagggtg attaaggtgc tacagcgtgt ttgccttccc
     7021 agacaacttc gcggtagtgc ttcacgtcgg tgtcgccttc agtactgata accagcacta
     7081 cggcatcttt gttcagcgcc agtttttcca tcaggctttg acgttgcggg tgataatgaa
     7141 ccgctgcgag aacgcccaaa ccgacagcgc cggattcacc ggagatgatg cgcgggtcgt
     7201 tgccgtacgg attacccagc acgcgcatac ctaatgcggc aacgctgtcc tggcaggaga
     7261 tgaattgggt ggcgcagtta cgtaggattt cccagcccag cgggttaggt tcgccacagg
     7321 ccaggcccgc catgatggtg gccatatcac cgccaacgtt gacgatgtcg cctttgacgc
     7381 cggagcgata aatacagtca gctttgtcag gttcaacaat aatgctgtgc agattttgcg
     7441 ggctgtagac gtcgaccaga taacccagca caccaccggc cattgctccg acaccggctt
     7501 gcagcagaac gtgcgtcggg gttacgccca tttcacgcat ttgctcgacg gcttcatctg
     7561 ccagggttgc gtagccttgc atgatccagg ttgggatttt ggtgtaacct tcccatgccg
     7621 tgtcctgtac cacttcccag ccgtgctgct gcgcgtgttg catggtcagg cgaacggtat
     7681 cgtcatagtt catatccgtg acgatgcact cggcaccgag gttcagaatg gcgtcaacgc
     7741 gttcctgagc agaacctttc ggcatgtaaa tcaccgcatt ctgtccgagt tgctgtgctg
     7801 cccacgccac accgcgcccg tggttgccgt cggtggtggt cgcgaa
//
LOCUS       DAJVUP010000179         7820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.179, whole genome shotgun sequence.
ACCESSION   DAJVUP010000179 DAJVUP010000000
VERSION     DAJVUP010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.179"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            270..413
                     /locus_tag="OQQ75_003669"
     CDS             270..413
                     /locus_tag="OQQ75_003669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobF family protein"
                     /protein_id="HCS1977849.1"
                     /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK
                     KTI"
     gene            426..635
                     /gene="cspE"
                     /locus_tag="OQQ75_003670"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             426..635
                     /gene="cspE"
                     /locus_tag="OQQ75_003670"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1977850.1"
                     /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL
                     AEGQNVEFEIQDGQKGPAAVNVTAI"
     gene            801..1610
                     /gene="rlmA"
                     /locus_tag="OQQ75_003671"
     CDS             801..1610
                     /gene="rlmA"
                     /locus_tag="OQQ75_003671"
                     /EC_number="2.1.1.187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(745)-N(1))-methyltransferase"
                     /protein_id="HCS1977851.1"
                     /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR
                     SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHA
                     FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK
                     AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY
                     PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY"
     gene            complement(1607..2173)
                     /gene="mntP"
                     /locus_tag="OQQ75_003672"
     CDS             complement(1607..2173)
                     /gene="mntP"
                     /locus_tag="OQQ75_003672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP"
                     /protein_id="HCS1977852.1"
                     /translation="MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG
                     AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRR
                     HGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS
                     IIGKKAEILGGLVLIGIGVQILWTHFHG"
     gene            complement(2601..3059)
                     /locus_tag="OQQ75_003673"
     CDS             complement(2601..3059)
                     /locus_tag="OQQ75_003673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HCS1977853.1"
                     /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR
                     IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFA
                     NVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLERIYKLIVLTQ"
     gene            complement(3114..3965)
                     /gene="manZ"
                     /locus_tag="OQQ75_003674"
     CDS             complement(3114..3965)
                     /gene="manZ"
                     /locus_tag="OQQ75_003674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020804907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HCS1977854.1"
                     /translation="MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCF
                     SMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDG
                     AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA
                     TRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSR
                     ITDQTGKEHVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY
                     ACGLLGL"
     gene            complement(3978..4778)
                     /gene="manY"
                     /locus_tag="OQQ75_003675"
     CDS             complement(3978..4778)
                     /gene="manY"
                     /locus_tag="OQQ75_003675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIC"
                     /protein_id="HCS1977855.1"
                     /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG
                     DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL
                     AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL
                     SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA
                     FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD"
     gene            complement(4841..5812)
                     /gene="manX"
                     /locus_tag="OQQ75_003676"
     CDS             complement(4841..5812)
                     /gene="manX"
                     /locus_tag="OQQ75_003676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HCS1977856.1"
                     /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET
                     LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL
                     MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND
                     YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA
                     HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ
                     VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK"
     gene            6275..>7820
                     /gene="yoaE"
                     /locus_tag="OQQ75_003677"
     CDS             6275..>7820
                     /gene="yoaE"
                     /locus_tag="OQQ75_003677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family cation transport protein YoaE"
                     /protein_id="HCS1977857.1"
                     /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD
                     KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT
                     TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA
                     VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI
                     GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPIPE
                     GAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPV
                     CRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGS
                     FVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQQA
                     LDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIVKE
                     QPAHDED"
BASE COUNT         1987 a         1914 c         1941 g         1978 t
ORIGIN      
        1 acgcactatg taataacttc tcccactggc ctggaacaac tgaacttatt gaactatgtt
       61 agaaaatacg ccagtttaag tatctgcctg aactggcaag gttaagcaca atgatatatc
      121 ggcgcgtatt ccgttgcata agtgtgcaaa aaaagtggaa gacgtatcga gatttgtgcg
      181 tctgatcgag acatgtttaa aaatggcttg ccataattaa cgttgtatgt gataacagat
      241 ttcgggttaa acgaggtaca gttctgttta tgtgtggcat tttcagtaaa gaagtcctga
      301 gtaaacacgt tgatgttgaa taccgcttct ctgccgagcc ttatattggt gcctcatgca
      361 gtaatgtgtc agttttatct atgttatgcc tgcgggcgaa gaaaacaatc taaggaattt
      421 ttcaaatggc aaagattaaa ggtcaggtta agtggttcaa cgagtctaaa ggttttggct
      481 tcattactcc ggctgatggc agcaaagacg tgttcgtaca cttctccgct atccagggta
      541 atggcttcaa aactctggct gaaggtcaga acgttgagtt cgaaattcag gacggccaga
      601 aaggtccggc agctgttaac gtaacagcta tctgatcgaa tccactgatc tgaagtgtga
      661 atacgcttca atctcgctat aaagcctcgt cgaatgcgag gctttttact atgctttatc
      721 ttcgctcctg gcgttcggat atttgcccgc cgcgtgattc gcgttacact tgcggccttt
      781 agtatcctgc cggagttgtc atgtcttttt cctgtccact ttgccatcag cctctttcgc
      841 gtgaaaaaaa cagctatatc tgtccccagc gacatcagtt tgatatggcg aaagaagggt
      901 atgtcaatct gctgcccgtt cagcataaac ggtctcgtga tccgggcgac agcgcggaaa
      961 tgatgcaagc acgccgcgca ttcttagatg ccggacatta tcagccgctg cgtgatgcaa
     1021 ttgtcgccca actgagggaa cggcttgatg ataaggccac ggcggtgctg gatattggct
     1081 gtggtgaagg gtattacaca cacgcatttg ccgatgcgtt gcccgaaatc accacgtttg
     1141 gtctggatgt ttcgaaggta gcgataaaag cggcggcgaa acgctatccg caggtcactt
     1201 tttgtgtcgc ttccagccac cgtttgccgt tttccgatac cagtatggac gccataatac
     1261 gtatttacgc gccgtgtaaa gcagaagaat tagcacgagt agtgaagccc ggcggctggg
     1321 tcattactgc cacgccggga ccgcgacatt tgatggagct gaaggggctg atttacaatg
     1381 aagtacatct tcatgcacct catgcagaac aactggaagg ttttacatta cagcagagtg
     1441 cggagttgtg ttatccgatg cgtcttcgcg gtgatgaagc cgtcgcatta ttgcagatga
     1501 cgccgtttgc ctggcgtgcg aagccagaag tctggcaaac actggcagca aaagaagtgt
     1561 tcgactgcca gacggacttt aatattcacc tctggcagcg ttcttattaa ccgtggaagt
     1621 gcgtccagag gatctggacg ccgatgccga tcagtaccag cccgccgaga atttccgctt
     1681 ttttcccaat aattgagccg ataaagcgac caaccatcat ccctaatgtt gacataatca
     1741 aggttgcaca accaatggcc aatgcggtcg cgataatgtt gacctgcagg aaagcaagac
     1801 caacacccac agccatggca tccaggctgg tggcaatcgc ggtggttacc agtagccaga
     1861 aaccgtgtcg acggcgcggc tcttcatctt catcatctgc gccacgaaaa ccctcaataa
     1921 tcattcgccc gccgaggaat atcagcagca caaacgcaat ccagtggttc cattcaagga
     1981 caaaccggct ggctaacatg cccattcccc agccgatcag cggcgtcagg gtttcgacgg
     2041 caccaaaaat aaggccggtt cgcaatgctt cagaaaattt cggtttatgg agggtggcac
     2101 ctttaccgat tgatgcagca aatgcatcca tcgacatacc aaacgcaaga agaacagtag
     2161 cagtgatatt catgacaatg tcctgaccgg ggtatccata aaacacatca tcgcccccag
     2221 caaacatgca tacatgaaca acaagccgtg atggtttttg cgttcatgca ggcatagcga
     2281 ttgatgtgca tatggtctcg cctgactgaa agtattcagt ccgtacgtgc cacgttttgc
     2341 aacgagtatg ttgacacgta catttccgga atctggaaat cggctactcc ccaaatgagg
     2401 gcgcaacctt aacatatttt gagaatataa aacaactgtt ggaatatatt atttcattgc
     2461 tttattgata acgaattcat ttagatttat atatcaatga aacgttaaaa taaataacaa
     2521 ataagggaag aggtaatata gcctaagcta tgtctgatta ttaaaaatac actaaacata
     2581 gctttggcta aattcataac ttattgagtt aaaacgataa gcttataaat tctttccaga
     2641 ttgtcgatat ttcgaacgcg gattaacagc cgacgctgtt ctaattgcat caccaacacg
     2701 ccatcttccg acaagttcat cgctttgatt cggctatatt caatccagac attggcgaag
     2761 aaaaaacctt tttgtttaaa gatgatcttc ggaacgcgga tccagaatat ataaaaaccc
     2821 atcagagcca gtgcgcttaa taaccatgtc gttattaatg caccatgatt cgtgacgttg
     2881 ttatagataa gaatgacaat caatccgacg aagataacgc tatcgatgcg accacgccgg
     2941 agcaaaggaa ttgccagcag ggtggggccg ttacggcggg gcatgatgaa ctgatcgtag
     3001 atcgcgaagg ccaggagtgc ggcgatgaaa agaatcagta ccaggtccgt gattgtcatt
     3061 aatcctccag ataaaaaaac ggggccaaaa ggccccggta gtgtacaaca gtcttacagt
     3121 cccagcaggc cgcaagcgta accagcgata ccgatgacga agaagccaac gatgatccac
     3181 agcgggttaa cttttttgcg cagtagccac atacaagcaa aggtcagcag cagtggtacc
     3241 aggcctggca ttaactggtc cagaatagtc tggacagtag taacgtgttc tttgcccgtc
     3301 tggtcagtaa tgcgagagac aaccagcggg atgttgacat gtgtccactt gttaaccaat
     3361 gcccccatga caaacaggcc gaggatagac gccccttccg tcagtttttg caggaagcca
     3421 ccacccatat ctttaacgat atcgatacct ttggagtaac catacgctac gccgtagtaa
     3481 cgggttgcca gacgcaccag gttaaacagg atgaagaaca gcagcggacc taacaggctg
     3541 ccgctcatcg cgataccggc acccagtgct gcaaataccg gacgtacggt tccccagaag
     3601 atcgggtcgc ctacaccagc cagcggcccc atcaaaccga ctttgatacc gttgatagca
     3661 ccgtcgtcga tctctgcgcc attagcacgc tgttcttcca gcgccagggt tacgccgaga
     3721 atcggcgcag ccacgaacgg ctgggtgtta aagaactcca ggtgacggcg aatagcttgt
     3781 ttacgagctt cgttgttctc agggtagagg cgacgaattg ccggtaccat agagaagcag
     3841 aaacccagtg cctgcatacg ttcgaagttc catgaaccct ggaagaggtt agaacgcagg
     3901 aagacgccac gaatatcact ttgagtgagt tttttctcgg tggtagtttg agttgtatca
     3961 accatttcgc tcacctgtta gtccagttcg ttatcgagat cgttgttacc agcagcctga
     4021 gcaggcgcac cggctacgcg gttgtatttc gggctaagtt ggatgtagag cactgccata
     4081 acagtaccga tcacacccag agcaaccagg ttaaagttgg tgaatgctgc ggttacgaag
     4141 ccgaggtaga agaacggcat caggtagcca gcacgcatca tgttgataac catcgcataa
     4201 ccaaccacca cgatcatgcc accggcgata ttcagaccat tggtcaccac ttccggaatc
     4261 gcattcagca tgttctgtac ttcgctggta ccaacagaca gcgcaacgat gacggccgga
     4321 atagccacac gcattgcttg caggaacaga gaagaaacgt ggatccagga aatcgctgtc
     4381 aggttgccgt tatcagcagc cttatccgca gcgtgctgga aagcaacggt aatagtacga
     4441 acgatgatgg tcagtacctg gcccgcagcg gccagaggga ttgccagtgc gatacctgca
     4501 ccaatgctct gatgacctgc gataaccaga atggtagaaa tgatagaagc cagagcggcg
     4561 tcaggcgcaa ctgcagcacc gatgttcatc cagcccagcg cgatcatttc cagcgtacca
     4621 ccgataataa taccggtttt catatcccca agaacgatac ccaccagggt acacgcgatt
     4681 agcggacggt gaaactgaaa ttcatcgagg attgatccca tacctgcgat acaggctacg
     4741 ataaatacca gcacaatttg aagagtggta atctccattg tacttctcct gtttacgtaa
     4801 gacttaagtg tgaaaactga gtgataatca acacaatacg ttacttatcg attttgctga
     4861 tcagatccat cattttcagt ttcggatcgg tggaaacctt acggacttcc agctcaatac
     4921 cgcgcgcatt cagtttcttg aacgcctcga tatctttttc atcaaccgaa accgcgttat
     4981 tcacctgggt tttaccctga cggaatgcca taccaccgac gttaacagag gtgattttca
     5041 cgccgccttc aacgagacgc tctacatctg ttgggttggt aaataacagc attacgcgtt
     5101 cgccagcata tttcgggttg ttgtagacgc gaatcatttt ggcaacatca actacgtgtg
     5161 ctgttacgcc cggaggtgca acctgggtga gcagtgtctt acgaacggta tccgcagcca
     5221 cttcatcact aacaacaata atacgggaga cattggtttc tttggtccag cgggtggcga
     5281 cctgaccgtg aatcagacgg tcgtcgatac gcgcaaggcc aataaccatg tagtcgtttg
     5341 gccccattgg ttttgccgga gttggagccg cttttggtgc tgcggcagcg ggtgctggcg
     5401 cggctttttc aaccggtttg gctttcagtg ctttcacgcc ttcacggcct gtttctactg
     5461 ccagcgcaac cagttcatca aagcttgggt catcatcacg agccattaac gtttccacga
     5521 gcattggaat gttaacgcct gcaatgactt cataatgctc tttgtcgacg acaatgcggc
     5581 tggcagcatt gaacgggctg cctccccatg tatcaacgag aaacagcacg cctttagtgg
     5641 tgtcgagttt tgccaactga gcgttgtact tttcaatcag cgtttcggca ttttcacctg
     5701 gaacgaaatc gatccagccg acgttttcct gctcgcctaa cagcatttct gccgttttaa
     5761 gcaactgctc tgcagcccaa ccatgtgtgc ctataacaat agcaatggtc acttgctacc
     5821 tcctttatta tcgttaacac ctcaacgtgc cagatgtatt tttgaatcgt cgtccacaat
     5881 cgaatcgatt cagataaggg ctacaaccaa aaacccctgc gtttcgcgat ttattttaga
     5941 tatcgaaaaa attattttat gtgatgaaga tccgtaattt aactttcgat tagcagaaat
     6001 ttcgaaaggt aaaatatcct tgtcacattc gtttgcaaag gaaggtaaat ctttgccaaa
     6061 tcagaggcgt ctctgatatg tttaactccc gtttaacaac catggagtat agggcagtag
     6121 cccgcagtat ggatcgtcac cgacgtcatt tcagcatcag gccttttaac gcctgccttt
     6181 ctggcactct atgccgcacc tttcgtttgc attttgtcgt tacgcctgca ttatttctgg
     6241 cgtcgaatag ctattcctta agcaggagct tgtcatggaa ttcttaatgg acccctcaat
     6301 ttgggcgggg ctactcacgc ttgttgttct cgaaattgtg ctgggtatcg ataacctggt
     6361 cttcatcgcc attcttgctg acaaactgcc gccaaaacaa cgcgataaag cgcgtttgct
     6421 ggggttatca ctggcgctga ttatgcgtct ggggctgctg tcgctgattt catggatggt
     6481 cacgctgacc aaaccgctat ttaccgtcat ggatttctcc ttctccggac gcgacctgat
     6541 tatgttgttc ggggggatat tcttgctgtt caaagcaaca accgaactgc atgaacggct
     6601 ggaaaaccgc gatcatgatt ccggccacgg taaaggctac gccagtttct gggtggtcgt
     6661 cacacagatt gtcatccttg acgccgtctt ctcgttggat gcggtaatta ctgcagtagg
     6721 gatggttaac catctgccgg tgatgatggc ggcggtagtg attgcgatgg cggttatgtt
     6781 gctggcatcc aaaccgctga cgcgattcgt taaccagcac cccacggtgg tggtgctctg
     6841 tctgagcttc ctgttaatga ttggtcttag tctggtggca gaaggtttcg gtttccacat
     6901 tccgaaaggt tacctgtatg ccgcgattgg cttctcgatc atcatcgaag tgtttaacca
     6961 gattgcgcgt cgcaacttta ttcgccacca gtcgactttg ccgctgcgag cgcgtactgc
     7021 cgatgccatc ctgcgtttga tgggcgggaa acgtcaggcc aatgttcagc acgatgccga
     7081 taacccgatg ccgatcccgg aaggtgcatt tgccgaagaa gaacgttaca tgattaacgg
     7141 cgtactgacg ctggcgtcgc gttctctgcg cgggatcatg acgccgcgcg gtgaaataag
     7201 ctgggttgac gctaatctcg gggtcgatga aatccgcgag caactgctct cttcaccgca
     7261 cagtctgttc ccggtatgtc gcggtgaact ggatgaaatc atcggtattg tacgtgctaa
     7321 agaactgctg gtggcgctgg aagagggcgt tgatgtggcg gcgattgctt cggcgtctcc
     7381 ggcgattatc gtcccggaaa ccctcgatcc gatcaacctg ttgggcgtgc tgcgtcgtgc
     7441 tcgcgggagc tttgttatcg tgaccaacga gtttggtgtg gtacaaggtc tggtcacgcc
     7501 gctggatgtg ctggaagcca ttgcgggtga attcccggac gctgacgaaa cgccggaaat
     7561 cattactgat ggtgacggct ggctggtaaa aggcggtaca gatttgcatg ccttgcagca
     7621 ggcgcttgat gttgagcacc ttgccgatga cgatgatatc gcgacggtcg cgggcctcgt
     7681 gatctcggca aatggtcaca ttccccgtgt gggcgatgtg attgatgtag ggccactgca
     7741 tatcaccatc attgaagcca atgattatcg tgttgatctg gttcgcattg ttaaagagca
     7801 accggcgcac gatgaagatg
//
LOCUS       DAJVUP010000180         7640 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.180, whole genome shotgun sequence.
ACCESSION   DAJVUP010000180 DAJVUP010000000
VERSION     DAJVUP010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7640
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.180"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            565..3978
                     /locus_tag="OQQ75_003678"
     CDS             565..3978
                     /locus_tag="OQQ75_003678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000438152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HCS1977858.1"
                     /translation="MEQSLNFEMLRSQWPELAELACMAERYVHSDPESCLVKLRNYTE
                     LMVRWLYRQERLPEGIKANLYDLMNADVFTSMMPEAIIMKMDALRIHGNRAAHGGRIK
                     AKDTYWLLKEAYLLGIWLYVRYAHGNVDDCPKFTLPPLTQSSGRADEKRLEDAIKAQD
                     ESRERELALQRALQQEQEKAEHLTQRLNEARARNQHVADILSIDEAETRRRLIDSRLL
                     AADWNVGEELKNTDQVTQEHPVKEQPTTSGDGYADYVLWDEAHKPLAVVEAKKTSVNA
                     EQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDHKTHGYPPRRVFGFYSKESLQ
                     YLIQQRETRLPLNRVPHVKDNEGKAVAGRLYQLETIARVSERFTNKYRQSLIVQATGT
                     GKTRVAIALSKLMIDARWVKRVLFLCDRKELRKQAANAFNQFTNEPLYVVGKSKKADR
                     QNARIYIATYPGMMKIMDHFDVGYFDLIIADESHRSIYNVYGDLFKYFDALQIGLTAT
                     PIDMVSKTTFGLFGCEGRIPTANYSLEDAIADNNLVPYEVVTHTTEFLREGIKREKLS
                     DAQIRELEEQGIDPNTLEFDGKALDEAIYNKDTNRYILRNLMENGLKDRDGQLPGKTI
                     IFARNHKHALLLNELFDDMYPQFAGRFCQVIDNYDPRAEQLIDDFKGLDESTNKELTI
                     AISVDMLDTGIDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGYDDNGKPLDKQ
                     KFRIFDHWGNFEYHELHTEEAEVTATKSLAQKRFEAWVMLGAAAQRKFDKQAVDLVAH
                     QLREQINALDEKSIAVQEKWQQKAQYSDEKVLRQLSPKTQQDLLSVLAPLMQWLDVRG
                     QSDAIRFDMDILAAQTARYTNPEELDVLWPIIVEKVERLPPHLAQVQQQGQRINQLRN
                     LSWWKQASLEELEDIRIHLRGIMHLMEKDATPKFGSIQVDITEDANLIQTETRKTNIR
                     SIDFKLYRQQVQGALEPLFQQNPVLKKIRNGEPVTQNELDELAKLVLIQNPNVDIRAL
                     KEFYPQATASLDKLLRTIIGMDSDAVEVRFAQFAADNSLTSQQLRFLSLLKNHIRDYG
                     TIEMRQLFEQPFTHIHNEGVTGVFPDIAQIARLQKIVEELGVVTDAATV"
     gene            4042..5676
                     /locus_tag="OQQ75_003679"
     CDS             4042..5676
                     /locus_tag="OQQ75_003679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HCS1977859.1"
                     /translation="MITGDLKSKIDGLWEDFWVGGITNPLTVIEQITYLMYSRMLDTQ
                     EQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQAD
                     ASKVTLLGNFMKDARLEIVKPSLLTKAVEVIKNLPLDRGDTKGDLYEYLLSKLTTAGI
                     NGQFRTPRHIIRTMVEMMEPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT
                     EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDAP
                     DIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLSAMVKTKKTELL
                     FLARILQMLKVGGRSATIVPQGVLFGSSKAHQSLRKTLVEDNQLETVINLPSGVFKPY
                     AGVATAILIFTKGGQTDEVWFYDLQNDGYSLDDKRNPIKDNDLPHLLASWKHYRTLRG
                     LPVDNFMGKKLASLLKQQYPEGINAGVDFKDRTQAAFVVPKADIAAQKYDLSINRYKE
                     VVYQAEEYEDPKVILKRLKDLEKEILADLDELEGML"
     gene            5685..6755
                     /locus_tag="OQQ75_003680"
     CDS             5685..6755
                     /locus_tag="OQQ75_003680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001438891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HCS1977860.1"
                     /translation="MVKLGDVINVHYGKALKADQRVSNGSVHVFGSSGIVGNHDKTLC
                     SYPTIIIGRKGSVGAITWAPSGGWIIDTAYYVEIKDNNKLDLRYLFYILSGIDLTKKT
                     ITTSIPGLNRDDLYDTFIKLPPFEEQKRIVDLLDKAEGIRQKREQSIKLADDFLRATF
                     ATMYGNPITNPKKWPVHLMGEIIEFKGGNQPPKSDFIFEPKQGYIRLVQIRDFKSDKY
                     ATYIPQEKAKRIFEVDDVMIARYGPPVFQILRGLSGSYNVALMKASPKENIRKGFIFY
                     LLQLPEYHDVVVKNSERTAGQTGVNLELLNKFNVPLPPIYYQDEILDRLARIEKFKEK
                     IEISLNHLEIQFLSLQKRLIGF"
     gene            complement(6880..7596)
                     /locus_tag="OQQ75_003681"
     CDS             complement(6880..7596)
                     /locus_tag="OQQ75_003681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977861.1"
                     /translation="MLSETKKRIPAHLFRMIKDELYELVLTDDPKGKLYVRDSEKIEE
                     GVSTTEFVVGYGAISMVKKSESMATKGLVGLERVDLIREVVFENGYYDWGCVVNDVLP
                     NICKGNARIPIFHFLNHAKLINPDGSIINETELSGGVLSRLNITPISFQSQGWDKRRS
                     ETVPEVKVGVNELYLAYDFSFFLRMMPYMEPGLIKRDMGELLKILKKHIDEAMNTQVL
                     SSNFCKLVCIYDYIKNSHRY"
BASE COUNT         2221 a         1739 c         1792 g         1888 t
ORIGIN      
        1 gtcctgttct cccaaatatc atggtattga tacgggagat tatgccgtac aggtacgaca
       61 cgttatgtcg tgccaaaggg gagtggatag aaaaaatggc gaagatgcga aaagttgatt
      121 aatgcattga aaaaaatgaa ttaataatga acttgggtaa aagcgccatc aaaatacgac
      181 acgacctgtc gtattttgtg ttagccggga aaagatatct gctacttact aaaatgattt
      241 agtgctgaaa atatttataa gccaataaat agacaggtat tacggagtaa cgcccaggct
      301 attttaacga gcctgctgtt ttattggctc aaaaaacata tcccatagat gatcagccat
      361 acccgcgtta gtgagcaagg tatcccttga gtagccaggg ctgaagatgc ccattgatgg
      421 gcgaaaacca aggttctggc cgttaaagcg gctatgtcgt taaacacatc accaccatat
      481 gccatccggc tcacttcgtc ggccaaatta gtgtgatatt ctttccagaa tttctgttgt
      541 atccacaaca taaggcgatg attgatggag cagtctctca attttgaaat gttgcgcagc
      601 cagtggccgg aactggcaga actcgcatgt atggcagagc gctatgttca ctccgatccg
      661 gaaagctgcc tggttaagct gcgcaactac accgaattga tggtgcgctg gttgtatcgt
      721 caggagcggt tgccggaagg tattaaggct aatctttacg atttaatgaa cgctgatgtc
      781 tttaccagca tgatgccgga agccatcatc atgaaaatgg atgcgctgcg tatccatggc
      841 aaccgtgccg cgcacggcgg acgtatcaaa gctaaagata cttactggct gctcaaagaa
      901 gcgtatttgt tgggaatttg gctgtatgtt cgctacgccc acggtaatgt tgatgactgc
      961 cccaaattta cactccctcc attaacacaa tcttcaggtc gtgcagatga aaaacgtctg
     1021 gaagatgcaa tcaaggctca ggatgaaagc cgtgagcgcg aactggcgct acaacgcgca
     1081 ctacagcaag aacaggaaaa ggccgaacac ctcactcaac gcctgaatga agccagagcg
     1141 cgtaaccagc atgttgccga tattctctct attgatgaag cggaaacccg ccgtcgcctg
     1201 attgactctc gcttacttgc agccgactgg aatgtagggg aagaacttaa aaacacggat
     1261 caagtcacac aagaacatcc agtcaaagag caacccacca cctctggtga cggttatgca
     1321 gactatgtct tgtgggatga ggcacacaaa ccgttggcgg tggtggaagc aaaaaaaacc
     1381 agcgtcaatg ccgagcaagg acgaattcag gcccggctgt atgcagactg gctggaaaaa
     1441 gaatacggtc agcgtccggt catcttctac accaacggct atgatatctg gctgtgggat
     1501 gaccataaaa ctcatggtta tcccccgcgt cgggtgtttg gcttctacag caaggaaagc
     1561 ctgcaatatc ttattcagca gcgtgaaacc cgtctgccgc tgaacagagt gccacacgta
     1621 aaagataacg aaggtaaggc cgttgccgga cgtttgtacc agctcgaaac cattgcccgc
     1681 gtcagtgaac ggtttaccaa caagtaccga caatcgttaa ttgttcaggc tacgggtaca
     1741 ggcaaaaccc gcgtggcaat tgcactaagc aaactgatga ttgatgcccg ctgggtaaaa
     1801 cgcgtcctgt ttctttgcga ccgtaaagaa ctgcgtaaac aggcggcaaa tgcctttaat
     1861 caattcacca atgagccgct gtatgtggtc gggaaatcga aaaaagcaga caggcagaat
     1921 gccagaatct acatcgctac ctatcccggt atgatgaaaa tcatggacca tttcgatgtc
     1981 ggttatttcg atttgatcat cgccgatgaa tcccaccgct ctatctacaa cgtctacggc
     2041 gatctgttta agtattttga tgccctccag attggcctga cggccacgcc aattgacatg
     2101 gtgagtaaaa ccactttcgg cctgtttggt tgtgaaggac gtattcctac cgccaactac
     2161 agcctggaag atgccatcgc cgataacaat ctggttccct atgaggttgt cacacacaca
     2221 acagaattcc tgcgcgaagg tatcaaacgg gagaaattaa gcgacgcaca aatccgcgag
     2281 ctggaagaac aaggcataga tcccaatacg ctggagtttg atggcaaggc gctggatgag
     2341 gcgatctaca acaaagacac caaccgctat atcctgcgta acctgatgga aaatggcctg
     2401 aaagatcggg acggccagtt gcctggtaaa accatcattt tcgcccgtaa ccacaaacac
     2461 gcgctgctgt tgaatgaatt gttcgacgat atgtacccac agtttgccgg gcgcttctgc
     2521 caggtcatcg acaactacga tccccgcgcc gagcaactga ttgatgattt taaagggctg
     2581 gatgaaagca ccaacaaaga gctgaccatc gctatctccg ttgacatgct cgataccggt
     2641 attgatgtcc cggaaattgt gaatctggtc tttgccaaac cggtcaaatc aaaagtgaag
     2701 ttctggcaga tgattggccg tggtacgcgc ctctgtccgg ggttgtacgg ttacgacgat
     2761 aacggcaaac cgctggataa acagaaattc cgcattttcg atcactgggg caattttgag
     2821 tatcacgagc tgcataccga agaggcggaa gtcacagcga caaaatcgct tgcgcaaaaa
     2881 cgcttcgaag cgtgggttat gctgggggcc gctgcgcagc gtaaattcga caaacaggcg
     2941 gtggatttag ttgctcacca gcttcgcgag caaatcaacg cactggatga aaagtcgatt
     3001 gccgtacagg aaaaatggca gcagaaagcg cagtacagtg atgaaaaggt gctgcgccag
     3061 ctttctccga aaacacagca ggatctgcta tctgttctgg ccccgttgat gcagtggctg
     3121 gacgtgcgcg ggcaaagcga tgccatacgc tttgatatgg atattctggc ggcgcaaact
     3181 gcccgttata ccaacccgga agagctggat gttctctggc cgatcatcgt cgaaaaagtg
     3241 gagcgcctgc cgccgcattt ggcgcaggtg cagcaacagg gacaacgaat caatcagctt
     3301 cgtaatttaa gctggtggaa gcaggccagc ctggaagagc tggaggatat tcgcattcat
     3361 ttgcgcggta tcatgcacct gatggaaaaa gacgcgacgc ctaaatttgg ttcgatacag
     3421 gtggatatta ccgaagatgc gaacctgatc cagacggaga cccgcaaaac taatatccgc
     3481 tcgattgatt tcaaactcta tcgccagcag gttcaggggg cgctggagcc gctgttccag
     3541 caaaacccgg ttctgaagaa aatccgcaac ggcgagccag tcacgcaaaa cgagctggat
     3601 gagctggcga agctggtgct gatccagaac cccaacgttg atattcgtgc gttgaaagag
     3661 ttttatccgc aggcaaccgc cagcctggat aaacttttgc gtaccatcat cgggatggac
     3721 agcgacgcgg tggaagtgcg ttttgcccag ttcgccgctg ataacagcct gaccagccaa
     3781 caactgcgct tcctgtcatt gctgaaaaac cacattcgcg attacggcac cattgaaatg
     3841 cggcagctct ttgaacagcc ttttacgcat atccacaacg aaggcgttac cggtgtgttc
     3901 cctgatatag cgcaaatcgc ccgcctgcaa aagatagtcg aagagctggg tgttgtgacc
     3961 gacgcagcga cggtataata cacgcatgac aagccccggc agcggggctt ttgtatttaa
     4021 aacaggatat aaacgctaac aatgattact ggcgacttaa aaagtaaaat cgacggacta
     4081 tgggaagatt tctgggtggg tggtatcacc aacccgctga ccgtaatcga acagatcacc
     4141 tatctgatgt attcccggat gctggatacc caggaacaac gcgacgaaaa gcgtaaacaa
     4201 atcgcgggta ttgattttaa accgcgtttt gcgccagaac agcaggagtt ccgtttcagt
     4261 cactatagca accttggctc ggatgagatg atggaagtgg tgcgcgatgg cgtattccag
     4321 catttccgtc agctcggcca ggccgatgct tcgaaggtga cgctgctggg caactttatg
     4381 aaagatgctc gtctggagat tgttaagccg tcattgctga ccaaagcggt tgaggtaatc
     4441 aaaaacctgc cattggatcg cggcgacacc aaaggcgacc tttacgaata cctgttaagc
     4501 aagctgacaa ctgccggaat caacggacag ttccgcacac cgcgccacat tatccgcacg
     4561 atggttgaaa tgatggagcc gaacccggcc cgcggcgaga cgatttgcga tcccgcctgt
     4621 ggcaccggtg gttttctggc aaccagctat gaatatctgc tggagaagta cagctcgctg
     4681 gaatccattc atactgagat tggcaccaac gaacgtggcg agctggaaga gcaaaaaatc
     4741 tttaccggcg atctgctgac accgtggcgt aaccatgtgg ataacaacat gttccacggt
     4801 tacgactttg acaccacaat gctacgtatc gccgccatga acctgattat gcacggcgtg
     4861 gatgcgcctg atatccacta tcaggacaca atgagccaga gtttcagcac aaacttcccg
     4921 caggccagta aaaacgcctt caacctgatt ctggcgaacc cgccgtttac cggttcactg
     4981 gacgaggaag atatcgactc cacgctgtcg gcaatggtga aaaccaaaaa aaccgaacta
     5041 ctgttcctgg cgcgtattct gcaaatgctg aaagtgggcg ggcgcagtgc cactatcgtg
     5101 ccgcagggcg tgctgtttgg ctctagcaag gcgcaccagt cacttcgcaa aacgctggtg
     5161 gaagataacc aactggaaac ggtgatcaat ctgccttctg gtgtatttaa accttacgct
     5221 ggcgtggcga cggcgatcct gatctttacc aaaggcggtc aaacggatga ggtctggttc
     5281 tacgatctac aaaatgacgg ctacagcctg gatgataagc gcaacccgat aaaagacaac
     5341 gatctgccgc atctgctggc aagctggaag cattaccgta ctttacgcgg gctaccggtt
     5401 gataacttta tgggtaagaa gttagcctcg ttgcttaaac agcagtaccc ggaagggatt
     5461 aatgctggcg ttgattttaa agatcgcacg caggcggcgt ttgttgtacc gaaagcggat
     5521 attgctgcgc agaaatacga tctatccatc aaccgttata aagaagtcgt gtatcaggcg
     5581 gaggaatatg aagatccgaa ggtgatattg aagcggttaa aggatctgga aaaagagatt
     5641 ctggcggatt tggatgagct ggaggggatg ctgtgagttc ggcgatggtg aagttagggg
     5701 atgttattaa tgttcactac ggaaaagcat taaaagctga tcagcgtgta tcgaatggaa
     5761 gtgtccatgt gtttggtagt tcaggaattg tcggcaacca cgataaaacg ctttgcagct
     5821 atcccacgat aattattggc cgcaaaggca gcgttggtgc tattacctgg gctccaagcg
     5881 gaggctggat cattgatact gcttattacg ttgagatcaa agataataat aagttagatc
     5941 tccgatactt gttttatatt ctgagcggaa ttgatctcac taagaaaacg attaccacaa
     6001 gtattcctgg attaaataga gacgatctct atgatacatt tattaaatta ccaccttttg
     6061 aagagcagaa acgaattgtg gatcttctcg ataaagctga gggtatacgc caaaaacgtg
     6121 agcaatccat caaactggct gatgattttt tgcgtgctac gtttgctaca atgtatggga
     6181 atcctattac aaaccccaaa aaatggcctg tccatcttat gggagaaatt attgaattta
     6241 aaggtggaaa tcaaccacct aaaagtgatt ttatttttga acctaaacag ggttatatta
     6301 gattagtaca aattagagat tttaaatccg ataaatatgc gacgtacatt ccgcaagaaa
     6361 aagcaaaacg tattttcgaa gttgatgatg ttatgattgc tcgttatggg ccacctgtgt
     6421 ttcaaatact tagaggttta tccggcagct acaatgtagc tttaatgaaa gcttcaccca
     6481 aagaaaatat taggaagggg tttatattct atcttctaca acttccggaa tatcatgatg
     6541 ttgttgtaaa aaactctgaa agaacagcag gacaaaccgg tgtaaatctt gaactattaa
     6601 acaaattcaa tgttcccctc ccacctatat actatcaaga tgagatatta gatagattag
     6661 ctagaattga aaaatttaaa gaaaaaatag aaatatcatt aaatcattta gaaatacaat
     6721 ttttatcact acagaagaga ttaataggtt tttaaatcct tagtatcgaa ataaacatta
     6781 atttattata ttaaattaag atattttagg aaattaaggc gtcactctta ggtaacgcct
     6841 ttttttacta tctcgccccc taagaaggtt atatcttact taatacctgt gactattttt
     6901 gatataatca taaatacaca ctaatttgca aaaattactt gacaacacct gagtattcat
     6961 agcttcatct atatgttttt tcaatatttt gagaagctct cccatatcgc gcttgattaa
     7021 tccaggctcc atataaggca tcattcttaa aaagaaactg aaatcataag caagatataa
     7081 ctcattgacc cccaccttga cctcaggaac ggtttcagag cgtcgtttat cccatccttg
     7141 agactgaaaa ctaataggag tgatatttaa tcgtgataaa acgccacctg agagttctgt
     7201 ttcattaatt atactcccat caggattaat taatttagcg tgatttaaga agtgaaaaat
     7261 aggaatgcgc gcattgcctt tgcatatatt tggcaaaaca tcattaacaa cacatcccca
     7321 atcataatat ccattttcaa atacaacctc tcggatgaga tctacacgct ccagtccaac
     7381 caatccttta gttgccatcg attccgattt ttttaccatc gaaatagcac catatcccac
     7441 aacaaactca gttgtactga ccccttcttc aattttctct gaatccctca catataattt
     7501 tcctttcgga tcatcagtta agaccaactc ataaagttca tcttttatca ttcggaataa
     7561 atgtgctgga atcctttttt tagtttcact cagcacctca aatatttctt tataggatgg
     7621 tgcctgaaca tattttaccg
//
LOCUS       DAJVUP010000181         7615 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.181, whole genome shotgun sequence.
ACCESSION   DAJVUP010000181 DAJVUP010000000
VERSION     DAJVUP010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7615
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.181"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..301)
                     /locus_tag="OQQ75_003682"
     CDS             complement(<1..301)
                     /locus_tag="OQQ75_003682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HCS1977862.1"
                     /translation="MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGV
                     VFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYP"
     gene            complement(295..1533)
                     /gene="preT"
                     /locus_tag="OQQ75_003683"
     CDS             complement(295..1533)
                     /gene="preT"
                     /locus_tag="OQQ75_003683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreT"
                     /protein_id="HCS1977863.1"
                     /translation="MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDP
                     GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQ
                     RFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAQPG
                     GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVG
                     LSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVTMDVASTLKVLG
                     CQAVTCVAREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELT
                     MAADKIILAVGQHARLDAFAELEPQRNTIKTQNYQTRDPQVFAAGDIVEGDKTMVYAV
                     KTGKEAAEAIHHYLEGACSC"
     gene            complement(1930..2169)
                     /locus_tag="OQQ75_003684"
     CDS             complement(1930..2169)
                     /locus_tag="OQQ75_003684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2542 family protein"
                     /protein_id="HCS1977864.1"
                     /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY
                     VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR"
     gene            complement(2172..2891)
                     /gene="sanA"
                     /locus_tag="OQQ75_003685"
     CDS             complement(2172..2891)
                     /gene="sanA"
                     /locus_tag="OQQ75_003685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane permeability protein SanA"
                     /protein_id="HCS1977865.1"
                     /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY
                     RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM
                     RKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM
                     GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED
                     AQGYPAVTPEQLLELQKKQGK"
     gene            complement(3041..3925)
                     /gene="cdd"
                     /locus_tag="OQQ75_003686"
     CDS             complement(3041..3925)
                     /gene="cdd"
                     /locus_tag="OQQ75_003686"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HCS1977866.1"
                     /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA
                     TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH
                     AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY
                     LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK
                     DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT
                     SATLKALGCHSIDRVLLA"
     gene            complement(4055..4750)
                     /locus_tag="OQQ75_003687"
     CDS             complement(4055..4750)
                     /locus_tag="OQQ75_003687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidB/LrgB family autolysis modulator"
                     /protein_id="HCS1977867.1"
                     /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF
                     LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA
                     MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV
                     FGHTLLNAMHIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI
                     APFLFPIILAVMG"
     gene            complement(4747..5145)
                     /locus_tag="OQQ75_003688"
     CDS             complement(4747..5145)
                     /locus_tag="OQQ75_003688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HCS1977868.1"
                     /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML
                     ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV
                     STLVVFLVVSWSSQLVHGERKVVGQKGSEE"
     gene            5384..6334
                     /gene="dusC"
                     /locus_tag="OQQ75_003689"
                     /pseudo
     CDS             5384..6334
                     /gene="dusC"
                     /locus_tag="OQQ75_003689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311053.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
     gene            complement(6722..6805)
                     /gene="yohP"
                     /locus_tag="OQQ75_003690"
     CDS             complement(6722..6805)
                     /gene="yohP"
                     /locus_tag="OQQ75_003690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohP"
                     /protein_id="HCS1977869.1"
                     /translation="MKIILWAVLIIFLIGLLVVTGVFKMIF"
     gene            7029..>7615
                     /locus_tag="OQQ75_003691"
     CDS             7029..>7615
                     /locus_tag="OQQ75_003691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HCS1977870.1"
                     /translation="MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTA
                     LPTALKNGWPDSQWWLEYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQD
                     GPQIDFSADMERQKMSAEGLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNR
                     AEVTARLGTVKARAAEREQTRQLLAGSVARLYWEW"
BASE COUNT         1963 a         1958 c         1909 g         1785 t
ORIGIN      
        1 ccgggtaatc ttctttcagc cgacgcaggg cggccagatt ctcctccagc ggatgctcgg
       61 caatctgctc catatttttg aagccgataa aaccggtatc ttctttcacc agatgatcaa
      121 aacgcggcga gacttcgttg gcgataaaaa agccgatcgt tttaaacacc acaccgcccc
      181 aacctgtgtc gtaggctttg gcacacatct catagcagtt gcctaccggc gaagaagaga
      241 ggcagaacgg gttgggaaac ttcacgccgc aaaaagtaat cgaaagatct ttcgttaaca
      301 tgagcaagct ccctctaaat agtgatgaat cgcctcggcg gcttctttcc cggttttcac
      361 ggcatagacc atggttttgt caccctcaac aatatcgcca gcagcaaaga cttgcgggtc
      421 gcgggtctgg taattttgtg ttttgatggt gttacgctgc ggctctaact ccgcaaaggc
      481 atctagtctg gcatgctgac cgacggcgag aataatttta tctgccgcca tcgtcagttc
      541 gcccgataac cgtacatgct taaacgtgac tttattgcct tccacggcta ctggcgtgaa
      601 tccatcgatg atcgaaacgc ccagctcccg ggcgctggta aactcttttt cgcttgccgg
      661 aaactcatct aactcttcac gcgctacgca agttaccgcc tgacagccga gaactttcag
      721 cgtgctggct acgtccatcg tgacatcacc gccgccgata attaatgcgc tttgtggaat
      781 gctgatatcg ccttgcgcct gtcgtgcacg ttgcaagaag tcgacggcaa tctcaacgtc
      841 actatgctca aacagcggta gcccggaacc gcttgataac cccacggtga ccagtaccgc
      901 gcggttttct gctttcagct gctcaagggt gagtgtgtta ccgacttcgt tgttgcactt
      961 aatggtcacg cccatttttt caatacgggc gatctctgca tccagtactg attgcggtaa
     1021 ccggaattgc ggaatgccgt tacgcaacca gccaccgggt tgtgcttctt tctcatagat
     1081 cgtgacgtca taaccctggt ttgtcagtgt cacactggcc tgcaatccgg caggacctgc
     1141 gccaataatc gcgactttgc cgagcgtttt agtaccgggc tgataaattt ccatcccggt
     1201 ttgttgttca aaatcagtaa caaaacgctg taagcggccg atatcaatgg gagcatcaac
     1261 accggcacgg gtacaaccgc tttggcataa tttctccgtc gggcacactc tggcacaaac
     1321 ggcaccgagg gcattatttt cgcgaattgt ctcggcagcg cctttaaaat tacgaaagta
     1381 gattgagcga ataaatttcc ccggatcggt ctgtgccggg caagcctgac tacagggagc
     1441 gtcgtgacat aataaacagc gagaggcttc tttaatcgcc agtaacggcg taaaagccgg
     1501 agtgagttca tccagataat tttgttgcgg catgtgatct tccttaatgc tatgagtaat
     1561 taaggcgaac gctaaatata ctcgtcatac ttcaagttgc atgtgctgcg tctgcgggtt
     1621 attcggccca tccatgggcc tcacccctta tggggccgct gcagggagcg ttcaaatccg
     1681 ctccatgcgg atttgtcgct caccccagtc acttacttat gtaagctcct ggggactcac
     1741 tcacttgtcg ccttcctgca actcgaatta tttagagtat aaatattgcg tgctgatatt
     1801 aaggctatgc gcgtggggaa atttatactg tgaaaggatt cacaaatagc tgcggttcag
     1861 aatgttatat ccgcagctta ttgagtgaag taataattat tctcaataat taacagaaaa
     1921 gagaaaatat taacgataga aaataagata aacaatcatg ccgatagata aaattccgaa
     1981 gccgatatat gccaccatat aagcgaaaaa gagtccggga ttttttgctc gccagacata
     2041 caccggttcc ggtgcatttt taacccgttt atcaatcgcg cctgcgcgcc agcctttcca
     2101 tgcttcgcgg aaacaaaata tcggaataag gaaaaaaacg gcaacgacaa aaaactgctg
     2161 tacatccata actactttcc ttgtttcttt tgtaattcaa gtaactgttc gggtgtgacg
     2221 gcgggatacc cctgcgcatc ttccggcacc tggtgcatag ccggaatagg gaccagcggc
     2281 cctaaaaaac gcggttcacg tttaaaaata taaaggtcag ccagcgcacc gaaacgggcg
     2341 gcaaattcgc gaatacgtac tgacagcata tctttcggtg acggtacggc ataacactga
     2401 gcctgaatcc ccatatgcag cgcaataaat aatgcccgct cacagtggaa acgttgggtg
     2461 ataataatga aatcattagt atcgaaaact ttgcgtgtac gcacgatgga atccagcgta
     2521 cgaaagcctg cgtaatcgag aacaatatct gatgggtcga caccagcagc gattaaatct
     2581 ttgcgcatgg tcatcggctc attataactt tgcaatgcgt tatcgccgct cagtaataga
     2641 taatttacct taccgctgtt ataggcatta atcgctcctt gaatgcggta gcgataatac
     2701 tgattaatta cgccagtacg ataatatttt gctgttccga gcaccacacc gacctggcgg
     2761 taggggagat cctgcaattc gtcgtagata taaggcgcgg ttttccagct catccagcga
     2821 tcgaggccga gcacagtcaa caacagcaag ccgatcagga ctaacaggct gaggaacacg
     2881 cgctttaaca tgcaggagac tcgatctaag gaaaatttcc atcaggctac tttacccgct
     2941 ggttttgcgc aagaaacggc aaactgtttg ccgggaattt cgacaccagg agagggctgg
     3001 caagccggac aaggcgttca cgccgcatcc ggcaccaggc ttaagcgaga agcactcggt
     3061 cgatactgtg acagccgaga gctttcagcg ttgcggaggt ggcatcccac tgaatcaacg
     3121 gcgcatcggc tttttctgcc agaaccgcgc gctggatatc cgggtaatca taacccttga
     3181 gattcaacag aattaacgct ccctgcaacg gtggcagagt cgggttgaat gcggcgtttt
     3241 cagcgtagct gccactgaaa atacgaccgt ctttacattc cagcgcgaca ccgcttggcg
     3301 acttactgta aggcatgtgc gaacggtttg ccgctgcaat cgccgcctga gaaagcgcat
     3361 caccagtcag cgcatagccg tgatcctgct cgtccatcag cagcgtttta atctccagat
     3421 ctttcggccc aaaggcatcc ggcagatagt cacgcagcgc gtgtgcctcg cggcccggca
     3481 gatgaatacg cagatccaga ccgctgttca gttcattcat aaactgacgg cagtgaccac
     3541 aaggcgtgta gttaacggtg atggctgcaa gcgctttttc accactcaac caggcgtggc
     3601 tgatcgcgct ttgttcggca tgaacggttt gctgcattgt cgcaccaata aattccatat
     3661 tggcaccgaa ataccaggtt ccgctcacac cgcgcgcaat tgcgccaaca ttaaaattcg
     3721 acaatggcgt acgcgcacag gccgctgcca gcggaagtag tgcgaatgcc agcgcgtctt
     3781 cgtccagccc cgttgcgctc ttcagcgatg agacttgctc cccggtcaac aaagcgggga
     3841 agtacttgtc tgccagaata ggttccagtg cagattgcaa gttatccgca agttgggcaa
     3901 aagcggtttg aaaacgtgga tgcatggcgt tgcctcataa tcatgtaatg ggataacagt
     3961 ttacgaaccc gttatggctt tatatgtgat ctgaatctca ttaattatgc aacgcgtgaa
     4021 acttacatca aaaatgcgcg acgcatcgca aattttagcc cattactgcc agaataatcg
     4081 ggaaaaggaa cggtgcgatc agcgaagtaa ttatcccgca taacaccagc gctagcgaac
     4141 taaatgcacc ttcctgataa tccagctcgg cgcagcgcgc cgtaccgagg gcgtgcgagg
     4201 cagtccccat tgccagaccg cgcgcagctt tggtacgaat atgcatcgca ttaagcaatg
     4261 tatggccaaa taccgcgccg aggatgccga cgaaaatcac gcaaactgcg ctgattgccg
     4321 gaataccgcc aatactgccg ccaaccgcca ttgcaatagg cgtggtgact gatttcggca
     4381 ggattgacgc ggcgatttcc ggtgaagcgc ccatcaacaa tgccacggaa gtccccgtca
     4441 ccatcgcaac cacgctgccg ataaaacaga tggtgatgat cgatttccag cgcgcgcgga
     4501 tctggtgtag ctgctcatat aaaggatagg ccagcgcgac gaccgccggt tgcagcagat
     4561 cgtttagcac ttcgctacct ttaaagtagc tgtcgtaaga gatgccggtc agcattaaaa
     4621 aagggatgat caccaccatt gctaccagca acgggttaag caagggaaac ttataccgtg
     4681 ccgccagttt gcgggcggca aaaaagacga tcaatgtcag tggtaatgac caccagatat
     4741 tagccatcat tcttctgatc ctttctgacc tacgacttta cgttcaccgt gcaccagttg
     4801 cgaactccag ctcaccacca gaaaaaccac cagtgtactg acagcacagg aaaccactac
     4861 cgggccaaac tgtgcgcgga gcaaatcaaa atattgcatg acgcctacgc caatcggcac
     4921 aaacaatagc gccatatagc gaatcagtac gtagcacccc ggattgaccc attttgccgg
     4981 aagaatttgc aaggccagca ggacaaacag gatcagcatc ccgatgatgc tgcccggaat
     5041 ggttaccggt agcagggaag caatgaaaat gcctgcatac aggcaggcat aaatcaggac
     5101 gaaagcgcgt aaatattgcc agataatgtt cagtgtctta ctcataatca acaccccaga
     5161 tgagatgaat tcatcataca attaattcgt aaaacgtgct accgatcaca ttaagaaatc
     5221 agcgcttatt ttttcgctcc ccggcattac gcaatgcgca acgaactcag gcatacatca
     5281 agcatagaga gggattacag tttgcagcaa tccctctttg cagaccttta atccgttgac
     5341 cataggcgct aacatagcgc ctcatttttt tgcgggtgaa gatatgcgtg tgttactggc
     5401 tccgatggag ggtgtgcttg actctctggt gcgtgaattg ctgaccgaag ttaacgacta
     5461 cgatctgtgc atcaccgagt ttgtccgcgt ggtggatcaa ctgctgccgg taaaagtttt
     5521 tcatcgcatt tgccctgagc tacaaaacgc cagccggaca ccatccggta cgctggtgcg
     5581 cgtgcagttg ttgggtcagt tcccacaatg gctggcagag aatgccgccc gtgcggtgga
     5641 attaggttcc tggggcgtgg atctcaattg cggctgcccg tcgaaaacgg tcaacggtag
     5701 cggtggtggg gcgacgttac tcaaagatcc tgaactcatc tactagggtg caaaagcgat
     5761 gcgtgaagct gtaccggcgc atttgcccgt cagcgtgaaa gtgcgtctgg gctgggacag
     5821 cggtgagaag aaatttgaaa tcgccgatgc ggttcaacag gctggtgcta cggagctggt
     5881 ggtgcatgga cggacaaaag agcagggtta ccgcgcggag catattgact ggcaggcgat
     5941 tggcgagatt cgccagcggc tgaatattcc ggtgattgcc aacggtgaaa tctgggactg
     6001 gcagagtgcg caacaatgta tggcgatcag cggctgcgac gcagtgatga ttggtcgcgg
     6061 ggcgctcaat attcccaacc tgagccgggt ggtaaaatat aacgaaccgc gaatgccgtg
     6121 gccggaggtg gttgctttgc tgcaaaaata tacccgtctg gaaaagcagg gcgataccgg
     6181 gttatatcac gttgcgcgga ttaaacagtg gttgagttat ttgcgtaaag aatacgatga
     6241 agcaacggaa ttatttcagc atgttcgggt gttgaataat tcccctgata ttgcaagggc
     6301 tattcaggca attgatatcg ataagctgcg ataatagtgg aatcgcagtt tatcagagac
     6361 aatgaatcgc ttattcagct tcatcatctt gttgcgctcc tttcatgagc taagccacat
     6421 attgccactg gcgcaaggag cgcgcagggg gaggacaatc gcctcctccc cctgcccccc
     6481 cgggctctgg cgaacaaaat cgccgctgcg cggtaccttc agcttatccc cttcggctac
     6541 cgggtcgggc gcgaggtaac gtccttgtaa gacgcgccct cagcccacat ccatgtgggc
     6601 tgccccggcc ttcggggaac gcttcagcga ttttgacgcc accaacaccg gagctgtttg
     6661 caaatcaagt acacaaaata tctagttcct gacctgacaa cttatatgcc atatctgatt
     6721 tttaaaatat catcttaaat acgccagtca ccaccagtag cccaatcagg aaaataatca
     6781 atacagccca gagtataatt ttcattggcg ttcctttatt tgtgagtgtt gaataagtat
     6841 aggaaaaaac gaagcccttt gccgttatcc ataaacgatt aagataaatc ggaagatatc
     6901 attcacttag tctatatttt tctgggtatg tcgttttatt gctactgatg tattgccacg
     6961 cgaaactaaa aaatatatcg caacacacgg taatctccgc gcaccgtttc ttacctgatt
     7021 attcccccat gaatcgtgat tccttttatc cagccatcgc ctgttttccg ctgttattga
     7081 tgctggccgg gtgtgcgcct atgcatgaaa cccgccaggc gttaagccag caaacgcccg
     7141 ctgcacaagt tgacaccgca ttacccacgg cgctgaaaaa tggttggcca gacagccaat
     7201 ggtggctgga gtatcacgat aatcagctca cttcattaat taacaatgca ctacagaacg
     7261 caccggatat gcaggtggct gaacagcgca ttcagctagc tgaagcccag gcgaaggcag
     7321 ttgccactca ggatggtccg cagatcgact tttcggcgga tatggagcgg caaaaaatgt
     7381 cggcagaagg cttaatgggg ccgtttgctc tgaacgatcc ggccgcaggt acgaccggcc
     7441 cgtggtacac caacggtact tttggcttaa cggcgggctg gcatctcgat atctggggaa
     7501 agaatcgggc ggaggttact gcccgcctgg gtacggttaa agcacgggcg gcggaacgcg
     7561 agcaaacccg ccaattgctg gctggcagcg tagcccgcct gtactgggag tggca
//
LOCUS       DAJVUP010000182         7590 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.182, whole genome shotgun sequence.
ACCESSION   DAJVUP010000182 DAJVUP010000000
VERSION     DAJVUP010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.182"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..296)
                     /locus_tag="OQQ75_003692"
     CDS             complement(<1..296)
                     /locus_tag="OQQ75_003692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS1977871.1"
                     /translation="MISDAQKAANAAGAIATGLLSLIIPVPLTTVQWANKHYYLPKES
                     SYTPGRWETLPFQVGIMNCMGNDLIRTVNLIKSARVGYTKMLLGVEAYFIEHKSR"
     gene            complement(268..816)
                     /locus_tag="OQQ75_003693"
     CDS             complement(268..816)
                     /locus_tag="OQQ75_003693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000867575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HCS1977872.1"
                     /translation="MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTA
                     MAIQWYAQRETDIENEKLRKELADLRAAAESDLQPGTIDYERYRLTKAQADAQELKNA
                     REDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
                     VAAKAGENVGGWIDDFRRTEGS"
     gene            1227..2294
                     /locus_tag="OQQ75_003694"
     CDS             1227..2294
                     /locus_tag="OQQ75_003694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001383880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta family protein"
                     /protein_id="HCS1977873.1"
                     /translation="MSQHQYYPQLKWKPAEYESLMLLDQTTLSGFTPIITIPDIDWDY
                     ENECYKKSLSSYLSDFGINLAASWKANRPVLLDVKYLDKHGSSRHHPLDMCIQDARVN
                     GKEIIPVVSPAYSTNYIHAVQRNLINGLAISITPQTWHQFTSLVNHLNIHPSLIDVII
                     DFGDIQNATDSLKQQALSMVNTLSGQAPWRNLILSSTAYPASQAGIPQHQVHHIPRHE
                     YDLWMYVVQNFSNGRTPSFSDYPTASSTITSVDPRFMSQYVSVRYSNDTSWIFVKGTA
                     VKGNGWGQTKNLCTTLVSSPEYQVFGSKFSWGDDYIYQRSLGANKSGGSKEWRKVAHT
                     HHITLVVRQLYWLAQTQPAKP"
     gene            complement(2236..2856)
                     /locus_tag="OQQ75_003695"
     CDS             complement(2236..2856)
                     /locus_tag="OQQ75_003695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000654791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sce7726 family protein"
                     /protein_id="HCS1977874.1"
                     /translation="MKDQDVRFAVHHKLLKESHLDPDCLVVDEFSISLGASRADIAVI
                     NGVIHGYELKSEYDSLERLPLQIKHYSSVMDKVTLVVAEKHLEGALKLIPGWWGVKTV
                     SVGPKGAILIKHMRGEKLNRNHDTLMLAQLLWKDECIDVLERWGYSKGIKSKPRFELW
                     NIIAENIPIANLRPEVRTALKKRVGWKVKAWQAESAPTNKAVSRLT"
     gene            complement(3273..3731)
                     /locus_tag="OQQ75_003696"
     CDS             complement(3273..3731)
                     /locus_tag="OQQ75_003696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009453323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HCS1977875.1"
                     /translation="MSRVAAIIYTLVICTIVCLSWAVNHYRDNAITYKAQRDKNAREL
                     KLANVVITDMQMRQRDVAELDARYTKELADANATIESLRADVSAGRKRLQVAATCAKS
                     TTGASSMGDGESPRLTADAELNYYRLRSGIDKITAQVNYLQEYIRTQCLK"
     gene            complement(3728..4261)
                     /locus_tag="OQQ75_003697"
     CDS             complement(3728..4261)
                     /locus_tag="OQQ75_003697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706619.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1977876.1"
                     /translation="MSAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRD
                     GSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VIRRDQESALACWGIDQ"
     gene            complement(4317..4631)
                     /locus_tag="OQQ75_003698"
     CDS             complement(4317..4631)
                     /locus_tag="OQQ75_003698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS1977877.1"
                     /translation="MTQNYELIVKGIRNFENKVTVTLALRDKKRFDGEIFDLDISLDR
                     VEGAALEFYEAAARRSIRQVFMDVAAGLCEGDELLPETRPCSEARYTIKINSSDNSIT
                     GC"
     gene            complement(4636..4851)
                     /locus_tag="OQQ75_003699"
     CDS             complement(4636..4851)
                     /locus_tag="OQQ75_003699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS1977878.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            complement(5002..6858)
                     /locus_tag="OQQ75_003700"
     CDS             complement(5002..6858)
                     /locus_tag="OQQ75_003700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HCS1977879.1"
                     /translation="MAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGDVVVSGATEPEWYYVIVLAGQSNAMAYGEGLPLPDSYDAPHPRIKQLARRN
                     TVTPGGEVCVFNDIIPADHCLHDVQDMSTINHPRADLSKGQYGCVGQGLHIAKKLLPY
                     IPNNAGILLVPCCRGGSAFTQGTEGTFSESTGASQDSARWGVGKPLYQDLLFRTKAAL
                     QKNPKNVLLAICWMQGEFDMTNASYAQQPAAFLAMVQQFRADLAGLAAQCHGGSPASV
                     PWICGDTTYAWKQEHGTQYEVVYGAYKGKESQQIYFVPFMTDGSGVNTPTNNPSEDPD
                     IAGSGYYGSASRTNKNWVSSNRPTHFSSWARRGIIPDRMATAILNVAGRTLAFISGKA
                     PEIKPSPGGDTPSGPSDGDTSVRTVSLLPTAGEAAAQGWTITGGSVALEDGVFKVTKQ
                     SNKPWSLMHPVDDAVSLLTRGGRLSCKFRLSGALTNNQFGLGIYLYTDVALPDVVAMT
                     GTGNPFLMSFFTQTTDGKLNLMHHRKAGNTKLGEFGNYSNDWQTLELVFTAGSATVTP
                     KLNGVAGPAFQVIKDSLTLGLNALTLTDITKNAAYGVEIESLVLEINAPASS"
     gene            7119..7454
                     /gene="iraM"
                     /locus_tag="OQQ75_003701"
     CDS             7119..7454
                     /gene="iraM"
                     /locus_tag="OQQ75_003701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS1977880.1"
                     /translation="MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFT
                     LTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQIC
                     PYGLKQQSP"
BASE COUNT         2039 a         1935 c         1597 g         2019 t
ORIGIN      
        1 cgtgatttat gctcaataaa ataagcctcc actcccagca acatctttgt ataaccaaca
       61 cgggcagatt taatcaggtt aacagtgcga atcaaatcgt tgcccataca gttcatgatg
      121 ccaacctgaa acggcagtgt ttcccaccgc cccggggtat aagacgactc tttaggaagg
      181 taataatgtt tattggccca ctgaactgtc gtcagtggaa caggaataat gagagataaa
      241 agccctgtag ctatcgcacc ggctgcatta gctgccttct gtgcgtctga aatcatcgat
      301 ccacccgccc acgttttcac cggccttagc tgcaacattg gaggctttcg cgatttcagt
      361 tttcaccaca tcaaggtgtg atggtgaaat gtccggatat ttacgctgta atgtcaacgg
      421 cacacgcaca agtatccccg aaatctcctg tgccacacgt tgcagaatga aggtaaacag
      481 ttcagtttcc agcaccactc cgtcttcacg ggcatttttc agttcctgcg catctgcctg
      541 cgcttttgtg agccggtagc gttcatagtc aatggtgccg ggttgtaaat ctgactccgc
      601 tgccgcacgc aaatcggcca gttctttgcg gagcttttcg ttttcgatat cagtttccct
      661 ctgcgcatac cactgaattg ccatggcagt atcaaataca gattcaatgc ccttactgcc
      721 tttggagacg caagggagcc cctgagactg ccagcgttca atcgtccgcg ggtccacgtt
      781 aaaaatttcg gcaagcctct ttttattaac cttcatagaa caacccatta tcaaatacaa
      841 ggcccgacat gaaaacgcca gaaaaaggca ttttcggaca ctttcatgtc ggacatttat
      901 gaatgcaata ttaaaaaaaa caaaaagtta tattcgagaa gtaccgacac gatttaccct
      961 gaaaaatttt cataaatagt gaaaaaccgc gaggtcgccg ccccgtaacg atctggatca
     1021 ccggaaagga cccgccaacg actttcgcgt gcaggcatta aaaattttgc agttccatgc
     1081 ctagttgaaa cctcgatttc tataacatcc aattttgtaa atttagatat agctcaactt
     1141 ttcccaatgt tttcaagtgt ataaaaacaa ttggcgttac gccataacac tatacttagg
     1201 ataagtaaag attttaagga gttttaatga gtcaacatca atattatcca cagctgaaat
     1261 ggaagcctgc tgaatatgaa tctctgatgc ttttagatca aactacgctc tctggtttta
     1321 ctccgatcat taccattcca gacatagact gggattatga aaacgaatgc tacaagaaga
     1381 gtttgagttc ttacttatct gacttcggta ttaaccttgc ggcatcctgg aaagccaatc
     1441 gtcctgtttt gctggatgtt aaatatttag ataaacatgg ttcgagccgc catcatcctc
     1501 tagatatgtg tatccaagat gctagagtaa atggtaagga aattatccct gttgtttctc
     1561 ccgcatattc aacaaactat atacatgctg ttcaacgcaa cttaatcaat gggctcgcta
     1621 tatctatcac cccccagaca tggcaccaat tcacaagtct ggttaaccac ttaaatattc
     1681 atcctagttt aattgatgta atcattgatt ttggagatat tcaaaacgca actgatagtt
     1741 taaaacaaca agcattaagc atggtcaaca cattatcagg ccaagctccg tggagaaact
     1801 tgattttatc ttcaaccgca tacccggcat cacaggcagg gataccgcaa catcaagttc
     1861 atcatattcc gcgccatgaa tacgatcttt ggatgtacgt agtacagaat tttagcaatg
     1921 gaagaacgcc aagttttagt gattatccca ccgctagctc taccattacg agcgtagacc
     1981 cacgcttcat gtctcagtat gtctcagtga gatattcgaa cgatacctca tggatctttg
     2041 taaaaggtac cgcagttaaa ggaaatggat ggggccaaac taaaaactta tgtactaccc
     2101 ttgttagttc gccagagtat caagtctttg gctccaaatt tagttggggg gatgattaca
     2161 tttaccaaag atcattaggc gctaacaaat ctggcggctc taaagaatgg cgtaaagttg
     2221 cacatacgca ccatattacg ttagtcgtga gacagcttta ttggttggcg cagactcagc
     2281 ctgccaagcc ttaactttcc agcctacgcg tttctttaag gctgttctga cttcaggcct
     2341 gagattcgct attggaatat tttccgcaat aatattccat aactcaaatc ggggcttgct
     2401 tttgattcct ttggaatagc cccatcgttc aagtacgtcg atacattcat ctttccaaag
     2461 caattgagcg agcatcaatg tgtcatggtt tcgattaagc ttttctccac gcatgtgctt
     2521 tataagaatg gcgccttttg gcccaacaga aaccgtttta acgccccacc aacctgggat
     2581 taactttaat gctccctcaa ggtgtttctc agctacgaca agagtaacct tgtccattac
     2641 agaagaataa tgcttgattt gaagaggcaa acgctccaaa gagtcatatt cacttttgag
     2701 ctcgtacccg tgtataacac catttattac agcaatgtct gctctactgg cgccaaggga
     2761 tatggaaaat tcatcgacca caaggcagtc tggatctaaa tgcgattctt tcaaaagctt
     2821 atgatgcacc gcgaacctaa catcttgatc tttcatgact tctccttact ccctccgtta
     2881 ttgaattata gcgcactgca ttttactgca tttgagagat ttgaccactt caatcacaaa
     2941 atgcttatct gcagcaacaa gattcatagc catacgacta tggtgattac cttttgtctg
     3001 gaaaactgac cattccacga agatcagata ggtctataga atcttggttt gtcatagcgt
     3061 tcgtcttact ttgagatgaa cctttgctgc ataggagatc agcccgtcaa ggctcaccag
     3121 cactaactga ctactcaaag gctcattcca aagggtttgg ttcgacgtgg ttgagtgcgc
     3181 tgcggtgcgc ggtgaaatac ctgtacaaaa atgccccgca tctgcgaggc attttcctga
     3241 aagtcacgta ttaaatttca gtgaaattaa aattatttta agcactgcgt cctgatgtac
     3301 tcctgcaggt agttgacctg agcggttatc ttgtcgattc cacttcggag acggtaataa
     3361 ttgagttcag catctgctgt aagtcttggg ctttctccat cgcccatgct gctggctccg
     3421 gtcgttgact ttgcacaggt ggcggcgact tgcaggcgct tacgcccagc agaaacatca
     3481 gcacgaagac tttcgatagt cgcgttagca tcagcaagct cctttgtgta tctggcgtcg
     3541 agttctgcta catcacgctg acgcatctgc atgtcagtaa ttaccacgtt cgccagcttc
     3601 agttctctgg catttttgtc gcgctgggct ttgtaggtaa tggcgttatc gcggtaatga
     3661 ttaacagccc atgacaggca gacgatggtg cagataacca gagtataaat aatcgctgcg
     3721 actctgctca ctgatctatc ccccaacagg ctaatgcgct ttcctggtca cgacgaataa
     3781 cctgtccata gcagttattt gaacgtatgc ggcaatcgcg cccaccatct tttatccacc
     3841 agcgaatcgc ctcgcatgcg cccttacgat caccggcatt cagccgctta taaaacgtcg
     3901 acgggaaaca cttaccgggg ccaatgttat agggacagaa tgacgctata cccgctttct
     3961 gtggttcggt cagtggtact ttaatattgc gctccaccca tgccagcgcc ttatcacgtt
     4021 caatagcgtt aacctggtcg catttttcct tcgacagctt cattcccggt atgacgggct
     4081 taccatccac cattgtggca ccacgacaga tggtccatat accggaacca tcgcggtatg
     4141 ccgtagtgtg gttaccctct ttttcatcca gaaactggtc aagtatttga ggagcagacg
     4201 cgcctgcagc aatcagcgcc agaacagcag ctgacaggcc gtatttgatt tttgcgctca
     4261 tggatattta tcaggatgct accaatgaaa gatactggaa agccaactgc aaaaagctaa
     4321 caacccgtaa tcgagttatc agaactgtta atttttatgg tataccgcgc ctctgaacag
     4381 gggcgcgttt ctggcaacag ctcgtcccct tcacataacc cggcagcaac atccatgaag
     4441 acctgtctga tgctccttct ggctgctgcc tcataaaact ccagcgcggc accttcaaca
     4501 cggtccagcg agatgtccag gtcaaaaatt tcaccgtcaa agcgtttttt gtcccgtaac
     4561 gctaaagtta ccgtaacttt attctcaaaa ttgcggatcc ctttcacaat cagttcatag
     4621 ttttgagtca ttgaattact ctccccgtgc agccttacga cggtcctctc tgattttgaa
     4681 atacaggtta gtcagatatg tcagcagccc aaacagcaga ctccccagca cgcctattgc
     4741 cgcccactga gacggggaaa ccctgtccag caactgcagg aaccagtagc ccgttcccac
     4801 cgctgacgtg gtgtatgaca cacctgttgt gattttttcc atctggtaca taccccgtct
     4861 cccgttatcc ggaagctgac aacaataaaa aaagccacca gttaagtact gatggctctg
     4921 ataactcatg caggcatctc agacgaccca ctgacactac cggtgagttt aacgatacct
     4981 tccatttgac tggctcactt tttatgatga tgctggtgca tttatctcca gcaccagact
     5041 ttctatctca acgccatacg ctgcattttt ggtaatatcc gtcagcgtca gcgcattcag
     5101 ccccagtgtc agactgtctt ttatgacctg gaatgccggg ccagccactc cattcagttt
     5161 cggagtaacc gtggcactgc cggcggtgaa caccagctcc agcgtctgcc agtcgttact
     5221 gtaattcccg aactcgccca actttgtgtt tcctgctttc ctgtgatgca tcagattcag
     5281 tttgccgtct gtggtctggg tgaagaacga catcaggaac gggttaccag tcccggtcat
     5341 cgccacgacg tcaggtaacg ctacatcggt atacagataa attcccagac cgaactggtt
     5401 gttggtcagt gcgcctgaca gtcgaaactt acagctcagt ctgccacccc gtgtcagcag
     5461 ggagactgcg tcatccaccg gatgcatcag ggaccaaggt ttattgctct gcttggtaac
     5521 cttaaacaca ccatcttcca gcgcaacact gccgccagtg atggtccagc cctgcgcagc
     5581 agcctctccg gctgtcggca gcagggagac tgtacgaacg gatgtgtcac catcagacgg
     5641 ccccgatgga gtgtcgccgc cgggcgaggg tttgatttcc ggtgccttac cactaatgaa
     5701 ggctaaggtg cgaccggcta cgttcagaat agcagttgcc atacgatcgg gaataatgcc
     5761 acgacgcgcc catgagctga aatgcgtcgg gcgatttgat gatacccagt ttttgttcgt
     5821 tcgggatgcc gaaccgtaat aaccagaccc ggcaatatca ggatcttctg acgggttgtt
     5881 tgtcggtgta ttaactccgc taccatcggt cataaaggga acaaaataaa tctgctggga
     5941 ttctttacct ttatatgcac catataccac ttcatattgc gtaccgtgtt cttgtttcca
     6001 cgcgtatgtc gtgtcgccac aaatccaggg gactgatgcc ggacttccac cgtgacactg
     6061 cgccgccagc ccggcaaggt cagcacggaa ctgctgtacc attgcaagaa atgctgctgg
     6121 ctgctgggcg taactggcat tcgtcatatc gaattccccc tgcatccagc atatcgccag
     6181 caaaacgttt ttcggatttt tctgcaatgc tgccttcgtg cggaaaagca gatcctgata
     6241 taacggctta cccactcccc agcgagccga atcctgactg gcccccgtgg actcgctgaa
     6301 tgtcccctcc gtgccctggg tgaatgccga accaccacga cagcatggta ccagcaggat
     6361 ccccgcgtta ttagggatat acggaagcag ttttttggca atatgtaagc cctgtccgac
     6421 acagccgtac tgccctttgc tcaggtcagc ccggggatga ttaatcgtac tcatatcctg
     6481 aacatcatgc agacaatggt cagcaggaat gatgtcgtta aatacgcata cttcaccacc
     6541 gggagtcact gtgttacgac gggccagttg cttaatgcgc ggatggggcg catcgtatga
     6601 atccggaagc ggaagccctt caccgtaagc catggcattg gattgcccgg ccagtacgat
     6661 gacgtagtac cactccggct cagttgcacc actgacgacc acatcacctt ctgctgcaat
     6721 cgcctgcatc agggtataag gggttatggc caccggacta ccaaacggct gccagccctc
     6781 tttcagttta tgtgtcagct tttccgcaag atctgacggc gacgccgccc tgacaacatc
     6841 atagtgttta aatgccatgg ttctttccac catctgaaaa atgattcttt aaaatacctg
     6901 acatgtaata cagaaaaaac acaaaaccat accttaaata aaaacctcat catcaagcag
     6961 atatgcatgg ataaactaca agacgagata taaaccaccc tgcatttaaa taaacaataa
     7021 acaacatcag aaaaataatt ctgctctatg gtttacaatc aaaaatatca tttatacttt
     7081 tcagaacatc accagcaagg cataaacaag gaaactaaat gaagtggatt gtgattgata
     7141 cagttatcca gccatcatgc ggaatatctt tttcagtcat atggagtaaa ataaaattaa
     7201 taatctggta tcaatcggat gctttcttac ctcctgaaag tatatttaca ctgactcaca
     7261 caggcatcat gctcaataac aaagtgctac ctgtaaccat ttacaacgta gtaccattca
     7321 ataaaacatt ctggaattta atcaaaaaca gccaggaatg ccctacaaat acagataacg
     7381 tattgaatga atgctttaat aaccgttgca ctctgcaaat atgtccttat gggctaaaac
     7441 aacaaagtcc ataaggagtt tactcacatc tgacaaaatc aatataaaca gcccctccgg
     7501 agaggggctg gagagtggcg ctatgtgcca ttgcatggtg ccgggtgcct cccggtgaat
     7561 tcagtaccag cacctgaatc cgcgattatc
//
LOCUS       DAJVUP010000183         7528 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.183, whole genome shotgun sequence.
ACCESSION   DAJVUP010000183 DAJVUP010000000
VERSION     DAJVUP010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7528
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.183"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..591
                     /locus_tag="OQQ75_003702"
     CDS             <1..591
                     /locus_tag="OQQ75_003702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707232.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1977881.1"
                     /translation="VINQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAAL
                     KQAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFGEWN
                     NAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRK
                     SVAALITDIIDKPEKHIGENIGINQPVTDGDKPLFM"
     gene            901..1629
                     /gene="mpaA"
                     /locus_tag="OQQ75_003703"
     CDS             901..1629
                     /gene="mpaA"
                     /locus_tag="OQQ75_003703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415842.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide amidase MpaA"
                     /protein_id="HCS1977882.1"
                     /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI
                     LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP
                     AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL
                     ACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE
                     ASEKYLFAMANLLRWHPKDAIRPS"
     gene            complement(1604..2569)
                     /gene="ycjG"
                     /locus_tag="OQQ75_003704"
                     /pseudo
     CDS             complement(1604..2569)
                     /gene="ycjG"
                     /locus_tag="OQQ75_003704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707230.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
     gene            2688..3194
                     /gene="tpx"
                     /locus_tag="OQQ75_003705"
     CDS             2688..3194
                     /gene="tpx"
                     /locus_tag="OQQ75_003705"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HCS1977883.1"
                     /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA
                     GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN
                     VITLSTFRNAEFLQAFGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE
                     AALAVLKA"
     gene            complement(3238..4779)
                     /gene="tyrR"
                     /locus_tag="OQQ75_003706"
     CDS             complement(3238..4779)
                     /gene="tyrR"
                     /locus_tag="OQQ75_003706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TyrR"
                     /protein_id="HCS1977884.1"
                     /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA
                     ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV
                     DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME
                     ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE
                     QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF
                     GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR
                     VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ
                     GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
                     AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ
                     KKNEE"
     gene            complement(4927..5988)
                     /locus_tag="OQQ75_003707"
     CDS             complement(4927..5988)
                     /locus_tag="OQQ75_003707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HCS1977885.1"
                     /translation="MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDE
                     APEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL
                     GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ
                     QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREICRSAAESTLMI
                     AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR
                     EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRR
                     QLIGQVKETLQKGKTPSEK"
     gene            complement(5985..7382)
                     /locus_tag="OQQ75_003708"
     CDS             complement(5985..7382)
                     /locus_tag="OQQ75_003708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HCS1977886.1"
                     /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL
                     NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV
                     SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL
                     NGQRGEWSVKWRMMCEGLDPLAPADENRLADIAAAWTDYLHHCKQQGLHFIQPGRFVL
                     PGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF
                     LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF
                     AATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNG
                     EKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI
                     RLDAALEFLIGDKLR"
BASE COUNT         1860 a         2078 c         1813 g         1777 t
ORIGIN      
        1 gtgattaatc aactggcaga taaacaaacc attaaacaaa ctttatttgc ccgtcagcca
       61 gcaaaaatcc acaaacccta tccaactaat agcaagatta ttatgggaga tgtactgaat
      121 catgcagcac tgaagcaggc catgcaggga caggacgttg tgtatgccaa ccttacgggg
      181 gaagatttag atattcaggc aaattcagtg atcgctgcga tgaaagcctg tgatgttaaa
      241 cgtctgatct ttgttctttc cctcggtatt tatgatgaag ttccaggaaa atttggcgaa
      301 tggaataatg cagttattgg tgagccccta aaaccattcc gcagggctgc ggatgcaatt
      361 gaggcttctg gactggaata tacaattctt cgccctgcct ggctgactga tgaagatatt
      421 attgattatg agcttacctc acgcaatgaa ccattcaaag gtacgatcgt atcacgtaag
      481 agtgtcgcag cattaatcac agatatcatc gataaacctg agaaacacat tggtgagaat
      541 ataggtatca atcaacccgt gactgatggt gacaagccat tattcatgta aatcaattac
      601 atagttacca tcgtaatgta ctatgtgcag tacgatttat taaacttatt aaggtgaact
      661 gatcaatccg atgcgattaa catgtgtaga accagtaaga ataaaatacg ccatgtatat
      721 aacattacga cttacatcta agtcagcata attctaatat ctgcacatca ataaaaatgc
      781 aaacaacttc cggcaaaaaa agtgatacaa gatcgatgac atagcgttga agaaaaggat
      841 ttgataatcc gcaaaatttg cacaacactg cctgtaatac ttcctgaacc agagacgatc
      901 atgaccgtaa cccgcccacg cgccgaacgc ggcgcatttc cgcccggaac agaacattac
      961 ggacgttcat tattgggcgc gccgttaatc tggtttcctg cccctgcagc cagccgcgaa
     1021 agtggtttga ttctggctgg cactcacggt gatgaaaact cttcggtcgt cacgctctcc
     1081 tgtgctctgc ggacgttgac accttctttg cgccgccatc atgtggtgct gtgtgtgaat
     1141 cctgacggct gccagctggg gttacgggcc aatgctaatg gtgtggattt aaacagaaac
     1201 tttccggcgg cgaactggaa ggaaggtgaa acggtttatc gctggaacag cgccgctgaa
     1261 gaacgtgatg tcgtattact gacaggtgac aaacctggct cagaacctga aacccaggcg
     1321 ctgtgccagc ttatacaccg cattcaacct gcctgggtgg tctcattcca cgatccactg
     1381 gcctgtattg aagatcccag acacagcgaa ttaggcgaat ggctggccca ggcgtttgaa
     1441 ttgcctctgg taaccagcgt cggttatgaa acgcctggct ctttcggcag ttggtgtgca
     1501 gatctcaact tgcattgcat caccgcagag tttccgccca tctcctccga cgaagccagc
     1561 gaaaaatatc tctttgcgat ggcaaacttg ctgcgctggc atcctaaaga tgcaattcgc
     1621 ccgtcgtgaa ctgaagcgcc ggttccacat ctaccgccag ccaggtcggt ccgtcaagat
     1681 cggcgaaact gacctgcggc accagcggta aagcggcgct aatggcacga gaggtacaca
     1741 acatgcagcc cagcatcaga ctgaaacctt gtgcacgcgc ttcagtcgcc agcgccagcg
     1801 cttccgtcag accaccggtt ttatcgagct taatgttaac catctcatag cgccctttca
     1861 gcgccttcag attgctacgt gtatgacaac tctcatcagc acaaatcggc aacggatgaa
     1921 taaaattctc cagcgccgca tcgtcctgcg caggaagggg ttgttcaagc atcgcaacgc
     1981 ctaaatccgc caatagctgg caacgcgccg ccaacccttc tgcacgccag gattcatttg
     2041 catcaacgat cagcgtcgca tcgggcacag ctgtgcgaat tgccaccatc cgctcactaa
     2101 taagatggtt atccagcttc actttcagta atttcgcgcc tgcctgccag agtgttgatg
     2161 cactattggc catctgatca ggcgtaccga tgactaccgt ctgtgcagtg ataactgtct
     2221 cgggaagcgt tatgccgatc aaatcagcca gcgattgctg ctgttttcgc gcggccagat
     2281 cccacaatgc acaatccagc gcattacgtg ctgcgccggc agggagaatt ttttgcaact
     2341 cctcccgtgt cagccctttc tctaattgcg acacgacgct cataatttgc gccattaccg
     2401 aggcatcact ttctccataa cgcggatacg gcgtgcattc gccggtgcct ttaataccct
     2461 cttcttccag ttcaaccacc accacgcgcg cttcactgcg acttccccgg gcaatcacaa
     2521 acggggtatg taagggctag gcttcctcaa ataccttaac ggttctcatc tttactcctt
     2581 gttgtcgcgg tggtctgcgg attaagcgca aatagcgttt gctgtgttat tgacagttag
     2641 cataaactag gtgtgacgtt aactatatgt aaacaggaaa gataatcatg tcacaaaccg
     2701 ttcatttcca gggcaacccg gttacagtcg ccaattccat cccgcaggcg ggtagcaaag
     2761 cgcagacttt tactctcgtg gcaaaagatc tgtctgacgt caccctcggt cagtttgcgg
     2821 gtaaacgcaa agtgctgaac attttcccga gtattgatac cggtgtttgc gccgcatcag
     2881 tacgtaagtt taaccaactg gcaaccgaga tcgacaacac cgttgtgctg tgtatttctg
     2941 ccgatctgcc gttcgcccag tctcgtttct gcggcgcaga aggtctgaac aacgttatca
     3001 ccctctccac tttccgtaac gctgaatttc tgcaagcctt cggtgtggca attgctgatg
     3061 gcccactgaa aggtctggca gcgcgtgccg ttgtggttat tgacgaaaat gacaatgtga
     3121 ttttcagcca gctggtggat gaaatcacca ccgagccgga ttacgaagca gctctggctg
     3181 tactgaaagc ataagttaat atgcctgatg gtgttgcacc atcaggcata ttcgcgctta
     3241 ctcttcgttc ttcttctggc ttaagccata ttcccgcaac ttattggcaa tcgcggtatg
     3301 tgaaacgccg agacgttttg ccagtttgcg cgtgctggga taattgcgat aaagctgggt
     3361 taataccgag cgttcaaaac ggctggtgat ttcgtccagc gaaccttcca tcgcatcttc
     3421 gcccacggct accgttgcgg cgtcataatc cggcaacaaa atatcctgtg gacgcagctc
     3481 ataaccgtcc agttgtgtca gtgcgcgata tatagcgttc tttaactgcc gcacatttcc
     3541 cggccacgca taacgcgtaa gtacagtatt caggtcagcg gccagtttcg gacgcggcac
     3601 gccctgctcg tcggcaaagc gggcgacgaa cagctcagtt aacggcatga tgtcctgcgg
     3661 acagtcacgt agcggcggca gattgagcgt caacacgttc agacgataat agagatcttc
     3721 acggaacatg cctttttgca ccagttcgac cagattcttc tgcgtagcgc aaatcacccg
     3781 cacatcgaca tgcacctcat ggtcttcgcc aacccgacgg aaagtgccat cattaagaaa
     3841 acgcagtaat ttcgcctgca tccgtggtga catttcccct atttcatcca acagcaccga
     3901 accaccgttc gcctgctcaa agaatccttt cttcccttcc ggagcatgac caaacagttc
     3961 actctcgacc gcatcttccg gtatagacgc acagttcagc gccaggtaag gtttgcccgc
     4021 tctggggctt gcctgatggc aggcgtaggc aaagagatct ttacctgtac ctgtgtcacc
     4081 cgtaatcagc agcggcgcgc ttagcatcgc cagtttctgc gcctgttcga caacatgctt
     4141 cattttcggg ctgacggcga caatttgact gaaggcgctg acgtcctggg cggcgacatt
     4201 ttgcaactgg cggcccatac gaatcgttga tcgcaacatc accaccgcac cggtcaggac
     4261 gtgttgatca ttttcatcct gaagataaac aggcgtaatc tccatcagga aattctgccc
     4321 attaataacg acatgctcgt tatgcgaatc ttgcggttcg ctttccagcc aacgtaaaaa
     4381 attaaagccg ttaatcaatt gtgcggcggt atggttgcgc aggcgatcca atttttgccc
     4441 aaaaagctga cagctcgccg ggttcgccat atccactttg cttttcatat cgacagagag
     4501 cacaggttcg ggcaacgcct ccagtaacgc gctcaacgcc agatgctcac gttcggaagg
     4561 catccacggg acagtacgca catcggtaac acctgcaata cggcgtattt cggccatcag
     4621 actgctgaaa ctctcaaact ccagttcagc aaaattgagg tagattcgcc caatgggatc
     4681 aatctcaata ccgcgtaaat caatgcctct tagcacgagt agatcgagta attcgcgggt
     4741 cagaccgagt cggtcttcac aaaagacttc cagacgcatg ggaaccttca cctgaaaaaa
     4801 gaacaattaa tatgatgata tgacactatt tggatagcag gaaggtttct gtcaacaatc
     4861 attgacacaa agacggaaaa acgggcactt cggcgtaaag atatccggtc agcacccgat
     4921 attgcattat ttttcgctgg gcgttttgcc tttttgcagc gtttctttca cctgaccgat
     4981 aagctgacga cggaaatccc cgaggcgagg tttgtcatcg tcaatccacg gcagcgggcg
     5041 gcaaagctcc atagctttaa tcccgagtcg tgccgtcaga agtccagcac caattccctg
     5101 agctgcgcgg gtagacaaac gagcagcgag atcttgcgac atccagtcca tccccacttc
     5161 gcgcaccagt tcgctggctc cggcaaaagc gatattcagc aataccagct taaacagacg
     5221 caaacggctg taatacccca gttcaatgcc atacagcgtg gcgatgcgat taattaaacg
     5281 cagattgcgc caggcgataa acgccatatc gaccaacgcc agcgggctga ccgcaatcat
     5341 caacgttgat tccgccgccg aacggcagat ttcgcgccgc gcctgggcat ctaaaactgg
     5401 ctggaccaaa tgcgcataca aactgaccac ttcacggtcg ttttgcgttt catggattga
     5461 ggcataccag cgttgcagcg ctggatgaga ctgatcaata cccgcctgct gcgccagttt
     5521 ttcgcaaaat gcgcggcctt tgcccgtgcc gtggctgtgc aacaaatcgc gcgcttcgtc
     5581 gcgttcatgg gcgcgctgtc gcaagcgcca taagcgccgc cactctgtta ccacagaacc
     5641 tacgccagcg ccgataatca atgccccagc ggcacatcca cccagcgcca cccagtcctg
     5701 agtttgccag gcattcattg tccactgtac accctgcccg acaacgcttg cgccaaacag
     5761 agccagcccg cccatcacca ttttgcgcca caggctgcgt ttcggacgta acgctgcatc
     5821 cattaccgct tcaacttgcc cctcttcttc aggcgcttca tcgagcgtgg ccggggcaaa
     5881 attttgcgcc tgattttcgt caaaggtctg ctgcgccctg aattttggat tctgatcgac
     5941 ctccagcgga ccgtcgaaat caatacgtgg ttttaacggt tcggtcatcg caatttatct
     6001 cctattaaaa attccagcgc ggcatcaaga cgaatatgcg gcagcggttt gtcgacatcc
     6061 atcacctgcg ggcgaaacgc ttcaaactgg aacccttgtt tgtcccagaa cgcctgaccg
     6121 ggcaaacgcg caggaacttc accgggataa acggtgagtg gcgcaccatc gctgagccgg
     6181 ttaccgcgca atgccggaat tttctcgccg ttgacgtcaa taatgccgct ggtggtcgcc
     6241 tgcaccgagg ccagccccag gcaatccata ctaatccctt caaacgccgc attttgccag
     6301 gcatcctgaa tcagttgttg cagtaatgaa accatattgg cgtgctgatc gatggtcaca
     6361 tggtccgctt tagtggcagc aaacaatagc ttatcgataa ccggcgaaaa caaacgccgg
     6421 aacaaggtac gctgcccgta gtggaaactt tgcatcagct gcgtcagtgc cagacgcata
     6481 tcattaaatg cctgtggccc actgttgaga ggttgcaggc aatcaaccag cacaatctgg
     6541 cggtcaaagc gcagaaaatg attcttatag aaccccttca ccaccttctc gcagtaataa
     6601 ttaaaccgct cgcgcagcat tccggcattg gtgtgcttat cggcctgcgc cagtttggac
     6661 tcgccccagg tatcgacatc cggccacggg aagaattgca gcgcgggcgc acctgccata
     6721 tctcctggca agacaaagcg ccctggctga ataaagtgca gcccctgctg tttacagtgg
     6781 tggagataat cggtccacgc ggcggcaatg tctgccagcc ggttttcgtc ggcaggtgct
     6841 agcgggtcca gcccttcgca catcattcgc catttgaccg accattcgcc gcgctgacca
     6901 ttgagtaagc ccgtcatctg gcgtgaccag cttaaatagt cctgcgccag catcggcagg
     6961 tcgagcaacc attcgccggg ataatccaca atctccagat acagcgtgga ggtgtccttg
     7021 aagtggcgta gcagcgaatc gttcgattta aaacgtagcg ccaggcggat ttcactgacg
     7081 ccgcgcgttg gcgtcggcca ggcgggagga tcgccatata actgcgccag tccttcatca
     7141 tatgtgaagc gcggaatgcc aaagtcacgc tgaggaatgc gttttacgcc cagcaggcgc
     7201 tcttcacgca ccgcgcttaa cagcggcaag cgtgctccgg cgtgaatatt gagcaactga
     7261 ttgaccatag cagtgataaa cgctgttttg ccgctgcggc ttagtccggt tacggcgagg
     7321 cgcagatgtc tgtcgacacc ccgattcacc agcgcattaa gttcattttt aagtcgcttc
     7381 attgctgtcc tgtgctgctc tgaagaccag aaaaaaatca ttcgtaagga tatgaatgtg
     7441 ggggccaggc cattgattat caactgcccg tgttgtcatc gacgggcgaa ctccataaga
     7501 tgtgcagcat tcacgttcgg acggagtt
//
LOCUS       DAJVUP010000184         7472 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.184, whole genome shotgun sequence.
ACCESSION   DAJVUP010000184 DAJVUP010000000
VERSION     DAJVUP010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7472
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.184"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..339
                     /locus_tag="OQQ75_003709"
     CDS             <1..339
                     /locus_tag="OQQ75_003709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1977887.1"
                     /translation="QTEAFLNAYGLSRFAPLGYDPRDLPIRDLAGYRKKGNHDGDPII
                     FYTFPAAFEQEIAKGFNTKQFAEVLKNAGMLTPPTSGRGYQGRVREDGRQIRVYVLNF
                     MAEESSQPEE"
     gene            714..1148
                     /locus_tag="OQQ75_003710"
     CDS             714..1148
                     /locus_tag="OQQ75_003710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000126714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS1977888.1"
                     /translation="MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGE
                     STFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISA
                     RTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF"
     gene            1159..1800
                     /locus_tag="OQQ75_003711"
     CDS             1159..1800
                     /locus_tag="OQQ75_003711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977889.1"
                     /translation="MSTQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSG
                     NNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVIS
                     LAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL
                     IALKWWDVIALAKILENRNHMPASNFQRIMGDIDKPVPKPMTLAELDELVGEE"
     gene            1797..2147
                     /locus_tag="OQQ75_003712"
     CDS             1797..2147
                     /locus_tag="OQQ75_003712"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977890.1"
                     /translation="MKPYILAAGLISSAPALSAIHCGGFTIQPDRYRTTINGDVVHIV
                     DAQFYGAPRDFSQAAIKLLPDAITTTDRQYRLETQGGNALLELMTRENPPRVLNRERC
                     DAGLTSFGWYTSAP"
     gene            2841..3452
                     /locus_tag="OQQ75_003713"
     CDS             2841..3452
                     /locus_tag="OQQ75_003713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977891.1"
                     /translation="MRDRTRSYTTDLPRIGLPFLANMRSRLADAEPGTQLYTQTESGT
                     LYAFRQADSYAMTINGVTRAIRTTTTKAGYGVREWYACPHCMKRAAKLYIGKKDIGCR
                     ACWKLHYKSQSADILDRMRMKIRQQRCAIWGSNDLANNLFNDIRMFPKPKGMRWATFD
                     RKRAELSVMEMAYWQAFSPVVDRITGVIERKAGKAARGIGLTL"
     gene            3990..4532
                     /locus_tag="OQQ75_003714"
     CDS             3990..4532
                     /locus_tag="OQQ75_003714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HCS1977892.1"
                     /translation="MYQLKITIRDSKPPIWRRVLVPEQIPFSELHAVIQLAFGWNDEH
                     LYMFEKGRKGDPGSEYRVWGEDESMGNAAITPLWAALQNDGDKLVYTYDFGDWWDCVI
                     VLEKQTHDTSNQPISCLRGKGTTPVENSGGLHGYNELLLQARESDNPEQAEIHNFLML
                     DIERRVYDLSSINDRLQTLN"
     gene            complement(4525..4884)
                     /locus_tag="OQQ75_003715"
     CDS             complement(4525..4884)
                     /locus_tag="OQQ75_003715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977893.1"
                     /translation="MRMTSRKKEILSYFEPDNLEWVTGEIGAPPFDVSGVAYLLHGMV
                     SFDKRHQLESTRRTLESMVAGGLLERVTVYESRQIRRGGETNATVVRYGLPGQCAVMR
                     DTGGADNAISGEYMRVS"
     gene            5318..6142
                     /gene="dinD"
                     /locus_tag="OQQ75_003716"
     CDS             5318..6142
                     /gene="dinD"
                     /locus_tag="OQQ75_003716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein D"
                     /protein_id="HCS1977894.1"
                     /translation="MNEHHQPFEEIRHYGTEGQEFWSARELAPLLDYRDWRNFQKVLA
                     RATQACEASNQAASDHFVETTKMVVLGSGAQRELEDVHLSRYACYLVVQNGDPAKPVI
                     AAGQTYFAIQTRRQELADDEAFRQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAI
                     DFAIFQNHGYRGLYGGLDQKAIHQRKGLKKNQNILDHMGSTELAANLFRATQTEEKLK
                     RDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK"
     gene            6434..7051
                     /locus_tag="OQQ75_003717"
     CDS             6434..7051
                     /locus_tag="OQQ75_003717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312548.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HCS1977895.1"
                     /translation="MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI
                     IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLY
                     IALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH"
     gene            complement(7048..7472)
                     /gene="ligB"
                     /locus_tag="OQQ75_003718"
                     /gene_synonym="yicF"
                     /pseudo
     CDS             complement(7048..7472)
                     /gene="ligB"
                     /locus_tag="OQQ75_003718"
                     /gene_synonym="yicF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312549.2"
                     /note="this ligase is similar to LigA but it lacks the
                     C-terminal BRCT domain; catalyzes strand joining of nicked
                     DNA in the presence of a divalent cation and NAD+;
                     internal stop; incomplete; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
BASE COUNT         1997 a         1836 c         1907 g         1732 t
ORIGIN      
        1 cagacggagg cgtttttgaa tgcctatggg ctgagtcgat tcgcgccgct gggttatgac
       61 ccgcgcgatt tacccatccg tgatttagcc gggtacagga agaaggggaa ccacgacggc
      121 gacccgataa ttttctacac cttcccggca gcgtttgagc aggagattgc aaagggcttc
      181 aataccaaac agtttgccga agttctaaag aatgcaggaa tgcttacacc accaacgagc
      241 gggcgaggct atcaggggcg agtaagggag gatgggcgac agattcgcgt ctatgtactc
      301 aatttcatgg cagaggaaag cagccagcca gaagaataat tatttcttca catgcgtagt
      361 tttagtgttg tctcggttgt ctttgttgtc tcaatttgta attgagattg atttataagg
      421 attttatttt aatttctgag acaacaccga gacaacattt agccattttg agacaacagg
      481 gcgaaagtgt gtttttagtc tggcaggcag tgagacaaca tttatgccgg gtgagacaac
      541 acgaaattgc aaatgttgtc tcagcaaaac ccagacgtgg cgcggcctgt agagccgtga
      601 gacaacaaag acaacagaga caacactatt tttgcttact atgaaaaaaa atcggcaggt
      661 gtcccacatt aagaaatcgt cattagcaaa actaataatc cagtgagggg aaaatgacag
      721 cacaaatttc agcatacggg cggctggtgg cagatcccca gacccgcacc acaacgaacg
      781 gtaacaacat ggctatggcg cggctggcgg tgtctctccc ctgtaatgcg gcagaggcgg
      841 gagagtcaac cttctggctg ggcgttattg cttttgggaa gcaggccgat gcgctggcaa
      901 agcaccagaa aggcgacctt gtgagcgtgg caggcaatat gcaactcaac cagtggacag
      961 ggcaggacgg cggtacacag caggggtatc aggtagtagc cgacagtgtg atcagcgcca
     1021 gaacggtacg ccccggcggg aaggcaggac agcggggaca ggcaacggac gcgctgagac
     1081 gtgcgcagca gccatcccgt gatgaatacg accaacgccc accattcgac gatgaaacgc
     1141 cattctgaga gggaagatat gagtacgcaa cccatcatta ttgagttcgg cagctatcgc
     1201 tggcccagac atcttgcaat acatgaagca gatcatgcga tagccgcatg gtttttcggc
     1261 atacaggagg tagaaattgc gttatcgggt aataaccgag tggcaaaaac ctaccttagc
     1321 ggcgatgttg atgaatgtgg agctgtcgcg gtatggcacg ccaactatcc acggaatgtg
     1381 gctgaggtta agtcttacac cctctcgaat gatgacacca ggttacgtct gatagaccag
     1441 gtatgccggg ctatggttat ctctctggct ggtatcgtcg cgcaatcacg ctatacgggg
     1501 gatgatatta acgcactgat ggaaacgtcc gggaaagcag acatgaaaaa tgttcgtgat
     1561 ttatcagagg tataccgggt ggctggtggg gaggatgctg atatacagag aatatccctt
     1621 tcccgtgctg aggcgctgat tgccctgaaa tggtgggatg ttatcgcgct ggcgaaaata
     1681 ctggagaacc gtaaccatat gcctgccagc aacttccagc gcattatggg tgatattgac
     1741 aagcctgtac caaagcctat gacgctggct gaactggatg aattggtggg tgaagaatga
     1801 agccatacat tctggcagcc ggcctgatct cctcggcacc ggcactatct gctatccatt
     1861 gtgggggctt taccatacag ccagaccgtt atcggacaac gattaacggc gatgtggttc
     1921 atattgttga tgcgcaattt tacggcgcac cgcgagactt tagccaggcc gccataaagt
     1981 tattgccgga tgccattacc actaccgata ggcaataccg cctagagacg cagggaggca
     2041 atgccttgct tgagttgatg accagagaaa acccgccacg tgtgcttaat cgtgagcgct
     2101 gcgatgccgg gttaacaagt ttcggttggt acacttctgc gccgtgatgt tcgttccgag
     2161 cgcagcctaa aatattggac tgttcttgac ggatttaaaa ctctaatgga gccaagtcct
     2221 tgccagtagc gggctaggag cctaattgtg attcaggtcg tcaaaaatat tcaggtttgc
     2281 ggcattggtt cgcagtacgc agtccggtac gcggcaaaac tgcgcattta acgtgcgtac
     2341 cacctgacga attctaacgc cggcattgca aacagatgcg tgcgcaaaat ggctaagacg
     2401 tctgatattg ctggctttgg ctcaatcagt ttggaggtgg cggtatcagt acgatgctaa
     2461 tttttgctaa ggttttagta cgcaactcag gtacgcactc tcaccagata cgaaaccgat
     2521 tcgcagttgc gtaccagcct gtaaggcgca ttatcgctgg gtttctacag tcgaatgcag
     2581 tacgcaaagt ggaaaatcct ccgaatacga aacccgagca ttgcgcagta aattgcgaat
     2641 tgcgcagtta acaaaatatc tccgcaaaac gaaacggata tcaatgcgca aaccatcctc
     2701 aacccccgcg cggttactgg ctttattgat gtgaaattgc aaaattggtg cgcaatttac
     2761 agtaaaatac gcatattatt tcgtattcaa tttgcgcacc gttcgcagtt aatgcgcagt
     2821 aattcgcagg aggccagcca gtgagagaca gaacgcgcag ctataccacc gacctgcccc
     2881 gtatagggtt gccattcctt gcgaacatgc gtagcaggct ggcggatgct gaaccgggta
     2941 cgcagcttta tacccagacc gaaagcggaa cgttgtatgc cttccggcaa gccgacagct
     3001 acgccatgac aatcaacggc gtgacgcggg ctattcgcac cacaaccacg aaggccgggt
     3061 atggcgtccg ggaatggtac gcttgccccc actgtatgaa gcgggctgca aagctgtata
     3121 tcggcaagaa agacattggc tgccgggcgt gctggaaact tcactataaa agccagagtg
     3181 ccgacatact ggacaggatg cgcatgaaga tacgccagca gcgatgcgcg atatggggca
     3241 gcaatgacct tgccaataat ctgtttaatg acattcgcat gttcccaaaa ccaaagggga
     3301 tgcgctgggc tacgtttgac aggaagcggg cagagttatc agttatggag atggcttact
     3361 ggcaggcatt cagcccggta gtggacagaa tcacgggcgt tattgagcgt aaagcaggaa
     3421 aagcagccag aggcattggc ctgactctat aaaagcaaaa cgcccgcacg gggcgtcaga
     3481 gaacgggata gacttctgcg acaatttgca ttcgccgcca atatagcaag ccgtccacat
     3541 caagcaataa actatcaccg ggagggggag gccaaatctc tgcaatcctg agccttaagg
     3601 actgcccgcc ccatcgtttt ttcatacccg cgaaaaatga aatttaatcc gggcgtgttt
     3661 catccttcca gagggtatga cgtatgacac cacgcgaaat agccttattg accatcgcca
     3721 aacttgagca tggaggccac cagcttacac aggcagatca acgggagata gaacgctcag
     3781 ttaatgccga tatagcccgg cgcgacaggt tccgcgaaat gatgcgagca cctgcctacc
     3841 agtggaagaa gccagcgccg cgcaggtaga tacgggatta ttccgcatgt aacttatgcg
     3901 tattaagcaa atttccttta ttcaccttta cagaattgtg agtacgtcag tatcgttatc
     3961 cttccgattc gcatttattc aggatttgca tgtaccagct aaagataacc atccgagaca
     4021 gcaaaccacc tatatggcgg cgtgtgctgg ttccagagca aatccccttt agtgaacttc
     4081 acgcggtgat ccagttggct tttggctgga atgacgaaca cctgtatatg ttcgagaaag
     4141 ggcgtaaagg tgatcccggt agcgagtatc gcgtatgggg tgaggatgaa agcatgggta
     4201 atgcggcaat cacaccacta tgggcagcgc tccagaatga tggtgacaag ctggtttaca
     4261 cgtatgactt tggcgactgg tgggattgcg tcattgtgct ggagaagcaa acacacgata
     4321 cgagcaatca gcccattagc tgcctgcgtg ggaaaggcac caccccggtg gaaaactcag
     4381 gcggcttgca tggttacaat gaattgctat tacaggccag agagtctgat aatcctgagc
     4441 aggccgagat ccacaatttc ctgatgctgg atattgagcg ccgggtttac gacctgagca
     4501 gcatcaacga cagattgcag actcttaact gaccctcata tattcgcctg atattgcgtt
     4561 atcagcgccg ccagtatcgc gcataacagc gcactgaccg ggcaaaccgt agcgcacgac
     4621 cgttgcgtta gtctcaccgc cgcgccgtat ctggcgcgat tcatacactg tcacccgctc
     4681 aagcagtcca ccagcaacca tgctttccag tgtgcgccgg gttgattcga gctggtgacg
     4741 cttatcgaac gacaccatgc catgaagcag gtaggccaca cccgacacat cgaacggcgg
     4801 cgcaccaatc tcaccagtca cccattcgag gttatccggt tcaaagtagc taagtatctc
     4861 ttttttgcgg ctggtcattc tcatagctgg caggttcctt attgtgggat agcactatca
     4921 tacaataagg cgcaaaagat aagaggccag aacagcaagc atgagagcat aaaacgagca
     4981 gccaaagaca gcgcctcaaa ataccgtgta cacaagggtg tacctactga gaaaacgcat
     5041 tacaagaaac acagcaacca cgggcgttta aagccactac tcaataaaca gattcaactc
     5101 gtaacgccaa ttcttacttt tcagccttca caaatgccgc ccactcaaac agagcggcat
     5161 ttttcttccc cgcaacttca attctgtttt gcgtgcctgc tccagatttt gcgatgtttt
     5221 tttgcccagc acactgagaa cgtgagatac tcacaactgt atataaatac agttacagat
     5281 ttactttctt tgcaatcgat atcacatgga gtgggcaatg aacgaacatc atcaaccttt
     5341 tgaagaaata cggcattatg gcactgaagg gcaagaattt tggtcagcta gagaattggc
     5401 accgttactg gattatcggg actggcgcaa ttttcaaaag gtactggccc gcgcgactca
     5461 agcgtgcgaa gccagcaatc aagctgcatc tgaccatttc gttgaaacca ccaaaatggt
     5521 tgtattaggt tcaggggctc aacgagaact tgaagatgtt catctctccc gctatgcctg
     5581 ttacctggta gtacaaaacg gcgaccctgc gaaaccggtt attgcggcag ggcaaactta
     5641 ttttgctatc cagacccgac ggcaggagct ggctgacgat gaagctttca ggcaacttcg
     5701 tgaagacgaa aagcgtcttt ttctgagaaa tgaattgaaa gaacataaca aacaattggt
     5761 tgaggcagcg cagcaagctg gggtagcgac agctatcgat ttcgccatat ttcagaatca
     5821 tggttaccgg gggctgtatg gtggattaga tcagaaagct attcatcagc ggaaggggct
     5881 gaaaaagaat cagaatatcc tggatcatat gggttcaaca gaactggcgg ctaatctctt
     5941 tcgagctacc caaacagaag aaaaactcaa gcgggatggc gtgaattcaa aacagcaagc
     6001 aaacaccaca cactttgacg tgggtcgcaa ggtgaggcaa accattcagg aacttggcgg
     6061 aaccatgcct gaggagttgc cgaccccgca ggtcagcatc aagcagttgg aaaacagtgt
     6121 aaaaattaca gagaagaaat agcagaaact aaaaactctt tttcttaatt gagatacccg
     6181 atgcgtaagc caaagtccag gtgcagtgaa cacaatggct aaacattgca cctttctttt
     6241 ccacccctca attttaacct attttttctt atgcattttc tcagacaaga actcagaata
     6301 atgcatctac gctacagaaa atagcgattt cacataacta caagttatca atttcctctt
     6361 accttaaaaa atctcaatcg tgacaatgcg cacaaatcgc taccctgcca gacagatttt
     6421 tagggagaga accatgctgt tacacatttt gtatttggtt ggcatcactg ccgaagccat
     6481 gacgggggcg ctggcggccg gacgacggcg catggataca tttggcgtaa ttattattgc
     6541 gaccgccacc gcaattggcg gagggtcagt gcgcgatatt ctgctgggcc actatccgct
     6601 cggctgggtc aaacacccgg aatatgtgat tatcgtcgct accgccgcag tactcaccac
     6661 tatcgttgct cctgtaatgc cttacctgcg caaagtgttt ctggtgctcg atgcgctcgg
     6721 actggtggtc ttttctatca tcggcgcaca ggttgcactg gatatggggc acggcccaat
     6781 tattgccgtt gtcgcggcgg taaccaccgg cgtgtttggc ggcgttttgc gcgatatgtt
     6841 ctgtaaacgc atcccactgg tattccagaa agagttgtat gctggtgtct catttgcctc
     6901 cgccgtgctg tacatcgcgc tgcaacacta tgtttctaac catgatgtgg tgattatctc
     6961 caccctggta ttcggctttt ttgcccgctt actggcgcta cgtcttaagc tgggattacc
     7021 ggtcttttac tacagccacg aaggtcacta aggttcaaaa cctgtgatct gctgggcagc
     7081 cagccaactg cccagcttct tgatttgcgc attttccttc cattcaataa cctgtctggc
     7141 gcgcccagat ccagtccccg gcagctgctg tcagaactgc tccgtgctaa ataaaagttg
     7201 cgactaggac cgttcatcac tggcattaag cgccgcccgg gttagcggta ttcccattgc
     7261 catcacccag cgagtaaaag gctgcttacg agccagatta aactgatgcc ataactgcgc
     7321 acttttactt ttcgcgatcc ccggcgtgtt ctgtaattgc tctggcgtta ataaaagcca
     7381 agaaaagata tgctcaaagc gatgagtctg atgcagcgcg cgccaaccgg cctcaccaat
     7441 gccatccagc ccaagaacct gttttgaccc ca
//
LOCUS       DAJVUP010000185         7436 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.185, whole genome shotgun sequence.
ACCESSION   DAJVUP010000185 DAJVUP010000000
VERSION     DAJVUP010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7436
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.185"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            168..275
                     /locus_tag="OQQ75_003719"
     CDS             168..275
                     /locus_tag="OQQ75_003719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588455.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977896.1"
                     /translation="MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG"
     gene            complement(328..1086)
                     /locus_tag="OQQ75_003720"
     CDS             complement(328..1086)
                     /locus_tag="OQQ75_003720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiY family protein"
                     /protein_id="HCS1977897.1"
                     /translation="MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFE
                     GNLNAGYLAQSGNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAAGG
                     RSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRY
                     DKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHF
                     GLKVTYNVTWNSEPPESAPEHTDRRTTLSLGYSM"
     gene            1373..2302
                     /gene="pfkB"
                     /locus_tag="OQQ75_003721"
     CDS             1373..2302
                     /gene="pfkB"
                     /locus_tag="OQQ75_003721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416237.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase II"
                     /protein_id="HCS1977898.1"
                     /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV
                     ARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGE
                     QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISASQKQG
                     IRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA
                     KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV
                     RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR"
     gene            2403..2693
                     /gene="ghoS"
                     /locus_tag="OQQ75_003722"
     CDS             2403..2693
                     /gene="ghoS"
                     /locus_tag="OQQ75_003722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HCS1977899.1"
                     /translation="MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEG
                     NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK"
     gene            2799..3659
                     /locus_tag="OQQ75_003723"
     CDS             2799..3659
                     /locus_tag="OQQ75_003723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HCS1977900.1"
                     /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV
                     KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS
                     AFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAA
                     EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR
                     ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA
                     QQSLDRLLAA"
     gene            complement(3700..4236)
                     /locus_tag="OQQ75_003724"
     CDS             complement(3700..4236)
                     /locus_tag="OQQ75_003724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YniB family protein"
                     /protein_id="HCS1977901.1"
                     /translation="MTYQQAGHIAVLKRILGWVIFIPALISTLISLLKFMNTRQENQE
                     GINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ
                     DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL
                     PVICIAAGYVFFSLLGFI"
     gene            4383..5051
                     /gene="hxpB"
                     /locus_tag="OQQ75_003725"
     CDS             4383..5051
                     /gene="hxpB"
                     /locus_tag="OQQ75_003725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HCS1977902.1"
                     /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN
                     ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA
                     LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK
                     LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK
                     DLLG"
     gene            5214..5804
                     /locus_tag="OQQ75_003726"
     CDS             5214..5804
                     /locus_tag="OQQ75_003726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707386.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1977903.1"
                     /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL
                     PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA
                     LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV
                     WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY"
     gene            5937..7328
                     /gene="tcyP"
                     /locus_tag="OQQ75_003727"
     CDS             5937..7328
                     /gene="tcyP"
                     /locus_tag="OQQ75_003727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine/sulfocysteine:cation symporter"
                     /protein_id="HCS1977904.1"
                     /translation="MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFG
                     LALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG
                     KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSD
                     LSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAA
                     IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFA
                     VHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA
                     ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGG
                     ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKA
                     ILDSEDDAELAHR"
BASE COUNT         1866 a         1809 c         1838 g         1923 t
ORIGIN      
        1 tattttcgat atatatgttg atgcataata ttattttttc ataaaacgca gaaacagtga
       61 ccaggtgtac aacgccaccc aacggctgta ataacaaaaa atcccttgat gcccgtccct
      121 tttgttacac tccgttatca cgcacaagag atatgcagga cactggtatg ccgactaaac
      181 gctttgataa aaaacactgg aagatggtgg tggtgctact ggcaatctgt ggcgctatgt
      241 tgttgctacg ttgggcagca atgatttggg gctgagcagt gacaaacgaa gacagccaga
      301 ccgcataaca cggtccggca gataatttta catgctgtag cccagcgata aggttgtccg
      361 acggtcggta tgttccggtg cagactctgg aggttcagag ttccatgtaa cgttgtaagt
      421 caccttcagt ccaaaatgtt cattaatagc aacatttaat gcgctttcgg agttcagcgt
      481 tgtgtcttcc gcgccaaaga ccgaaacacc ctgcgtaaat ttagcgttgt cagtcaactg
      541 ccatgcataa gccccggagg catagcccag cggctgagtt tcactggcat tgtcggtata
      601 tttgtcgtaa cgcacacctg gaccgaattc aaagcggaaa ctgtgtaccg ggccattcaa
      661 aaactgacga ccataacccg cggtcaacac atcgcgctct cgatagccgt tataacggtc
      721 tgtcagccag cttgcctgac caaataaata gtcataatca gttaaattaa agcggctacg
      781 cccgcccgcc gcatattttt ctgaagaacg ctcatcatta gaagaagtat tactggcgtt
      841 cccccacagc gaccaggcag tggtttgtcc ataccaggtc atggtggtgt cagccgtaag
      901 tgaggagctt ttcgtattgc ctgattgtgc aagatatcct gcgttcagat taccttcgaa
      961 aggtttttta gcgctggcag gatcgtccat gacagtaaaa acggaatcat cggcagctgc
     1021 attcagtgac gcaaacatgc cccccgccaa cataacgatg gcaggaactg tcttcaaaag
     1081 cttcatttat caagagtccg tacaacaaaa aaagagacca tcgcggtccc ggaaactttc
     1141 ttaaggatca aagattagcg tccctggaaa ggtaacgaat tataaaaagg cgcgaataac
     1201 ttagcaatgt attcttattt cattttttga ataagcatgt ggcgaaaaca gatttttatt
     1261 tatatatatt tatctgcaaa attttaaata aagctccaat aaatcatatt gttaatttct
     1321 tcactttccg ctgattcggt gccagactga aatcagccta taggaggaaa tgatggtacg
     1381 tatctatacg ttgacacttg cgccctctct cgatagcgca acaattaccc cgcaaattta
     1441 tcccgaagga aaactgcgct gtaccgcacc ggtgttcgaa cccgggggcg gcggcatcaa
     1501 cgtcgcccgc gccattgccc atcttggagg cagtgccaca gcgatcttcc cggcgggtgg
     1561 cgcgaccggc gaacacctgg tttcactgtt ggcggatgaa aatgtccccg tcgctactgt
     1621 agaagccaaa gactggaccc ggcagaattt acatgtacat gtggaagcaa gcggtgagca
     1681 gtatcgtttt gttatgccag gcgcggcatt aaatgaagat gagtttcgcc agcttgaaga
     1741 gcaagttctg gaaattgaat ccggggccat cctagtcata agcggaagcc tgccgccagg
     1801 tgtgaagctg gaaaaattaa cccaactgat ttccgcttcg caaaaacaag ggatccgctg
     1861 catcgtcgac agttctggcg aagcgttaag tgcagcactg gcaattggta acatcgagtt
     1921 ggttaagcct aaccaaaaag aactcagtgc gctggtgaat cgcgaactca cccagccgga
     1981 cgatgtccgc aaagccgcgc aggaaatcgt taatagcggc aaggccaaac gggttgtcgt
     2041 ttcccttggt ccacaaggag cgctgggtgt tgatagtgaa aactgcattc aggtggtgcc
     2101 accaccggtg aaaagccaga gtaccgttgg cgctggtgac agcatggtcg gcgcgatgac
     2161 actgaaactg gcagaaaatg cctctcttga agagatggtc cgttttggcg tagctgcggg
     2221 gagtgcagcc acactcaatc agggaacacg tctgtgctcc catgacgata cgcaaaaaat
     2281 ttacgcttac ctttcccgct aacaaaaaca ttcccccagc attgggggaa tcaccaccaa
     2341 cctgtcggca acgcgtttct ccgactatgc tcaaaagtca tgtgataaca aaggggtgaa
     2401 ctatggccag tggcgatctt gtccgttatg tcataaccgt catgttgcat gaggatacat
     2461 tgactgaaat taacgagttg aataattacc tgactcgcga cggttttttg ctcaccatga
     2521 cggatgatga gggaaatatc catgagctgg ggactaacac ttttggactt atcagtaccc
     2581 aaagtgaaga agaaattaga gaactggttt cggggcttac ccaaagtgca accggcaaag
     2641 atcctgaaat caccatcacg acctgggagg aatggaatag caacagaaaa taaatggttt
     2701 ttgggcaata atcagtctgt ggtgtgcgtt agctcgtgtt tttacaccgc attcttgcgc
     2761 taaccttatg atctggcaga caacatggga gagacatcat gtggcaggca atcagtcgtc
     2821 ttttgagcga gcagttaggt gaaggcgaaa tcgaactgcg taatgaactg cctggcggag
     2881 aagtccatgc cgcatggcat ttgcgctatg caggacatga ctttttcgtc aaatgtgatg
     2941 aaagggaact gcttcccggt tttaccgccg aagccgacca actggagtta ctgtcgcgta
     3001 gtaaaaccgt caccgtgcct aaggtttggg cagtaggcgc tgaccgtgac tacagttttc
     3061 tggtgatgga ttatctccca cctcgtccgc tggatgcgca tagcgcattt attcttggtc
     3121 agcaaattgc gcgtttacat caatggagtg accaaccaca atttggcctc gattttgata
     3181 actcgctctc cacaactcca cagcccaaca cctggcaacg tcgctggtca acgttttttg
     3241 ctgaacaacg gattggctgg cagttggaac tggcagcaga gaaagggatc gctttcggca
     3301 atatcgacgc catcgtcgag catattcagc agcgtctggc ctcgcatcaa ccgcagcctt
     3361 ctctgttgca cggcgattta tggtccggca actgtgcgct gggtccggat ggcccgtaca
     3421 ttttcgaccc tgcctgctac tggggtgacc gagagtgcga cctggcgatg ttaccgctgc
     3481 atactgaaca gccgccacaa atctatgacg gctatcagtc agtatccccg ctacctgccg
     3541 atttccttga acgtcaaccg gtttaccaac tctacacgct gttaaatcgt gcaaggttat
     3601 ttggcggtca gcatttggtt attgctcagc agtcactgga tagattatta gcagcatgat
     3661 atgggttgaa gataatggcc gctgtgtgcg gccttttgat taaataaacc caagcagaga
     3721 aaagaacaca taacctgcag caatacaaat aaccggcagg atatacagtg agaaaaactg
     3781 caggaaaata gtatggtgcg gaacaacaat acgggactca atttgttcac gcgttagccc
     3841 ctcttcccct ttggcttttt ccagaatgag ttgatcttca acaccttccc gcaagaagcg
     3901 cgcctggcga ctcattcggg caccggaatc ctgcaacgcc agtccgacaa aaatcaggat
     3961 gaaaatcacc cagaacataa cgttcacgcc accattaaaa ttgggcgtcg gggagttata
     4021 ccagaacaga ttcaaaaaag gcgtattcgc ctgcatcata tcgatcatga catgagtaaa
     4081 gtcgagcatg accgcattaa tgccttcctg gttttcctgc cgggtattca taaatttcag
     4141 caaagaaatc aatgtagaga tcaatgcagg tataaaaatc acccaaccca aaatcctttt
     4201 caaaacagca atgtgtccag cttgttgata cgtcatgagt tctccttgat taagacgcgt
     4261 cgtttcactt agtttacctg tagatatctg ttttcgccca ttctttaaag gcgatatgat
     4321 aggcgcttaa tcataagcac ggcttaatac cttacacata atgctctaaa ggagaggttg
     4381 taatgtcaac cccgcgtcag attcttgctg caatttttga tatggatgga ttacttatcg
     4441 actcagaacc tttatgggat cgagccgaac tggatgtgat ggcaagcctg ggggtggata
     4501 tctcccgtcg taacgagctg ccggacacct taggtttacg catcgatatg gtggtcgatc
     4561 tttggtacgc ccggcaaccg tggaatgggc caagccgtca ggaagtagta gaacgggtta
     4621 ttgcccgtgc catttcactg gttgaagaga cacgtccatt attaccaggc gtgcgcgaag
     4681 ctgttgcgtt atgcaaagaa caaggtttat tggtgggact ggcctccgcg tcaccactac
     4741 atatgctgga aaaagtgttg accatgtttg acttacgcga cagtttcgat gccctcgcct
     4801 cggctgaaaa actgccttac agcaagccgc atccgcaagt atatctcgac tgcgcagcaa
     4861 aactgggcgt tgacccactg acctgcgtgg cgctggaaga ctcggtaaat ggcatgatcg
     4921 cttctaaagc agcccgcatg cgttccatcg tcgttcctgc gccagaagcg caaaatgatc
     4981 cacgttttgt attagcaaac gtcaaactct catcgctgac agaactcacc gcaaaagacc
     5041 ttctcggtta atgaccaggg gcagtgatca cgctgcccct ggttctttat ctgaatttgc
     5101 attcaactga cggattaatc gtcaatttaa gagaaagagt tacaccgtca ccacttccgt
     5161 gcactgtata aaaatcctat actgtacgta tcgacagttt agtgagtttt atcatgacgg
     5221 cggaaggtca ccttctcttt tctattgctt gtgcggtatt tgccaaaaat gccgagctga
     5281 cgcccgtgct ggcacagggt gactggtggc atattgtccc ttccgcaatc ctgacgtgtt
     5341 tgttaccgga catcgatcac ccaaagtcgt ttcttgggca gcgattaaaa tggatatcaa
     5401 aaccgatcgc ccgcgctttt gggcatcgtg gttttaccca cagtctgctg gcggtatttg
     5461 cgctgctggc aaccttttac cttaaggttc cggaaggctg gttcattccg gctgatgcgc
     5521 tacaaggaat ggtgctgggt tatttgagcc acatacttgc cgatatgctg acacccgccg
     5581 gtgttcccct gctctggcca tgccgctggc gtttccgctt gcctatccta gttccccaaa
     5641 agggcaacca actggaacgt tttatctgta tggcattatt tgtctggtcg gtatggatgc
     5701 cccattcatt acccgagaac agcgctgttc gttggtcatc gcaaataatc aataccttgc
     5761 agatccagtt tcatcggctt attaagcatc aggttgaata ctaaaaagac aaaaatcacc
     5821 tttctggaat aagcaattcc atttgaatat aagagccagc tcacagttct gttaatcttg
     5881 cgccaacact atgactgcta cgcagtgata gaaataataa gatcaggaga acggggatga
     5941 actttccatt aattgcgaac atcgtggtgt tcgttgtact gctgtttgcg ctggctcaga
     6001 cccgccataa acagtggagt ctggcgaaaa aagtgctggt gggtctggtg atgggtgtgg
     6061 tttttggcct tgccctgcat accatttatg gttctgacag ccaggtactt aaagattctg
     6121 tacagtggtt taacatcgtt ggtaacggct atgttcaact gctgcaaatg atcgttatgc
     6181 cgttagtctt cgcctctatt ctgagcgcgg ttgcccgtct gcataacgca tctcagttag
     6241 gcaaaatcag ttttctgacc atcggtacgc ttttgtttac cacgctgatt gcggcgctgg
     6301 tcggtgtgct ggtcaccaac ctgtttggtt tgacggctga aggtctggtt cagggtggtg
     6361 cagaaactgc acgtctgaac gccattgaaa gtaactatgt tggtaaagtc tctgatctga
     6421 gcgttccgca gctggtcttg tcctttatcc cgaaaaaccc gtttgccgat cttaccggag
     6481 ccaatccgac gtcaattatc agcgtggtaa tttttgccgc attcctcggc gtagctgcat
     6541 tgaaactgct gaaggatgat gcgccgaaag gtgaacgcgt cttagccgct atcgataccc
     6601 tacaaagctg ggtgatgaaa ctggttcgcc ttgtcatgca gttgacccct tacggcgttc
     6661 tggctctaat gaccaaagtg gttgcaggtt ctaacttgca agacatcatc aaactgggaa
     6721 gtttcgttgt cgcgtcctac ctcggtctgc tgattatgtt tgcagtgcat ggcattctgc
     6781 tgggcattaa tggcgtgagt ccgctgaagt acttccgtaa ggtatggcct gtgctgacgt
     6841 ttgcctttac cagccgttcc agtgctgcgt ctatcccact gaatgtggaa gcacaaacgc
     6901 gtcgtctggg cgttcctgaa tccatcgcca gtttcgccgc ctctttcggt gcaaccattg
     6961 gtcagaacgg ctgcgccggt ttgtatccgg caatgctggc ggtgatggtt gcgcctacgg
     7021 ttggcattaa cccgctggac ccgatgtgga ttgcgacgct ggtcggtatt gttaccgtta
     7081 gttccgcagg cgttgccggt gtcggtggtg gtgcaacttt cgccgcactg attgtgctgc
     7141 ctgcgatggg cctgccagta accctggtgg cgctgttaat ctccgttgaa ccgcttatcg
     7201 acatgggccg tacggcgcta aacgttagtg gctcgatgac agctggcacg ctgaccagcc
     7261 agtggctgaa gcaaaccgat aaagccattc tggatagcga agacgacgcc gaactggcac
     7321 accgttaatt cttatgctgg caatggtccg ttttgtatag gggccgttgc tttacttttt
     7381 aaatgttcca tcgcggcgat gcatactgac tcatatttaa acagatcgtc agcgaa
//
LOCUS       DAJVUP010000186         7410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.186, whole genome shotgun sequence.
ACCESSION   DAJVUP010000186 DAJVUP010000000
VERSION     DAJVUP010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.186"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..1459
                     /locus_tag="OQQ75_003728"
                     /pseudo
     CDS             1..1459
                     /locus_tag="OQQ75_003728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
     gene            1470..2543
                     /locus_tag="OQQ75_003729"
     CDS             1470..2543
                     /locus_tag="OQQ75_003729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001685709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1977905.1"
                     /translation="MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSG
                     YLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVGEFPYIYYTSKINQALTYAGVHS
                     NINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
                     IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMANVYIRGDITAPQSCEIN
                     NLQPVYFDFKEIPAADFSSVVGSAVITHKITKTVTIECENLGILNTDDISTSFYATEP
                     NTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYGEKLGSVTFSAAPAS
                     LTGARPAPGQFTATATITVEIVR"
     gene            2791..3831
                     /gene="pstS"
                     /locus_tag="OQQ75_003730"
     CDS             2791..3831
                     /gene="pstS"
                     /locus_tag="OQQ75_003730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HCS1977906.1"
                     /translation="MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKW
                     ADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIG
                     GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRR
                     ADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGY
                     VEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP
                     ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWK
                     TNIKDSSGKPLY"
     gene            3918..4877
                     /gene="pstC"
                     /locus_tag="OQQ75_003731"
     CDS             3918..4877
                     /gene="pstC"
                     /locus_tag="OQQ75_003731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008806729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstC"
                     /protein_id="HCS1977907.1"
                     /translation="MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIIS
                     SWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE
                     LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL
                     FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI
                     VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA
                     EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR"
     gene            4877..5767
                     /gene="pstA"
                     /locus_tag="OQQ75_003732"
     CDS             4877..5767
                     /gene="pstA"
                     /locus_tag="OQQ75_003732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HCS1977908.1"
                     /translation="MAMVEIQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFW
                     LIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGI
                     MAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIAL
                     ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAI
                     ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT
                     LCVLLLNILARVVFAKNKHG"
     gene            5858..6631
                     /gene="pstB"
                     /locus_tag="OQQ75_003733"
     CDS             5858..6631
                     /gene="pstB"
                     /locus_tag="OQQ75_003733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HCS1977909.1"
                     /translation="MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGP
                     SGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP
                     FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ
                     RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC
                     SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG"
     gene            6646..7371
                     /gene="phoU"
                     /locus_tag="OQQ75_003734"
     CDS             6646..7371
                     /gene="phoU"
                     /locus_tag="OQQ75_003734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HCS1977910.1"
                     /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH
                     NQDSDLAKRVIEGDKNVNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERI
                     GDVADKICRTALEKFSQQHQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYRE
                     DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVK
                     GQDFRHVGGDELDKLLAGKDSDK"
BASE COUNT         1863 a         1717 c         1933 g         1897 t
ORIGIN      
        1 cagatgttga tgtcagcgtg ggtgaattgc gcgatgaaga cggatttaca ccggacgtcc
       61 ttcaggcgca aatacttcat ggtttttccc acgggatcac tttatatgga ggtatgcagg
      121 ctgctgaaaa ttatggttct gcagctctgg gtgtcggtaa agatcttggc gctttgggcg
      181 caatttcttt cgatgtgaca catgctcgtg cgaattttag ccatgatgat acagaaacgg
      241 gtcagtcata tcgctttctc tattcaaaac gatttgacga cacagacact agcttgcgcc
      301 tggttggcta tcgttactcc accgagggct actataccct caatgagtgg gcatcgcggc
      361 gcaacagccc tgaagacttt tgggaaacag gtaaccgacg tagtcgcgtg gagggaacgc
      421 taacgcagtc gttggggaga gattatggca atttatacct gacattaagc cggcaacaat
      481 actggcatac cgatgatgtc gaacgattaa tgcaatttgg ctacagcagt agctggaagc
      541 gtctctcgtg gaacgtctcc tggagttatt ccaatactgc cagacagggg acggggaaca
      601 accatgccag tgataacacc agtgagcaga tctacatgct ctctttatct gttcctttat
      661 cgggctggtg gggtaatagt tacgccacct attctgtttc gcaaaacgat aattccggta
      721 gctcacatca agcggtacgg cgctggaaag aaataacctt tcatggaatt taatgcagtc
      781 ctataacagt catgatgatg aggttggcgg taatatgtcc ctgacctatg atggctctta
      841 tggcacggtg aacggcagct ataactacag ccaaaattcc cagaggctga attatggtat
      901 cagaggggga attctggcac acagcgaagg ggtaacgtta agtcaggagt taggtgaaac
      961 tattgctctt gttaaagcac ctggggccgc cgggttagaa atagataata tgcgcggtgc
     1021 tgcgacggac tggcgcggct atacggtcaa gacacagcta aacccttatg atgaaaatcg
     1081 ggtagcaatc agcgataact atttctcgaa gtcgaatata gaacttgata ataccgtcgt
     1141 tacgatggtt cccacgcgtg gtgcagtggt taaagcggag tttgtgactc atgtgggtta
     1201 tcgcgttctc ttcagagtgt taaatgcaaa tggtaaaccg gtaccttttg gagccattgc
     1261 tgcgatacaa gatgcaagtt tggcagattc aggaattgtc ggtgaccgtg gcgaacttta
     1321 tctttctggt ctaccagaaa aaggacaggt tacgttatcc tggggagaaa acgcctcaac
     1381 aaaatgcatc ttcaattatt cactttcgac accagaaagt gagagcggat taattgaaca
     1441 gggtgtgaca tgtcattaaa aggattttta tgaacaagta tatcaaacag tggtgctttg
     1501 ctgtgtttat gctctcgtta agtagtgtag cacttgcagc tcctaaaggt atctgtaccc
     1561 ctgataatgg cgtatttcac agtacgcttg atttctcggg atatcttatt accgcgaacg
     1621 aaaataaggt tggaacgaca tttaacacca ctgtaactaa tggatcctca tatcctggac
     1681 gctgtcattg tgatactggt aacgtaggag aattccccta tatctattat acgtcaaaaa
     1741 taaaccaggc attaacttat gctggggttc actctaatat taattattat gatcttaatc
     1801 cgaaccttga tgttgggatt gctatagata ttcttggggt tgggtatgtg aatgcacctt
     1861 ttgaatatca tgctaacaac ccgtctggta atacaaagta caattgcaac cgcattgaac
     1921 ctttaagtat atctagtggg gctaaagcga tagtatattt ttatatcaag aagacatttg
     1981 caggaaaatt gattattcct gaaacaaaga tagtgacatt gtatggaaca attagccgtg
     2041 acaccccggt ggattactca cagccgatgg ctaatgttta tattcggggc gatattacag
     2101 ctccgcaaag ttgcgaaata aataatttac agccagttta ttttgatttt aaagaaatac
     2161 cagctgcaga tttttcatct gttgttggaa gtgcggtaat aacacataaa attactaaaa
     2221 cggtcactat tgagtgtgaa aacctgggga tactgaatac cgatgatatc agtacgtctt
     2281 tttatgctac cgaacccaat acggacaatt caatggtcgt aacttcaaac tctaacgtgg
     2341 ggataaaaat ttacgacaaa aataataagg aaatcaaagt gaacggtggt gagttgccaa
     2401 cagacatggg taaatcaaca gtgtatggtg aaaaattagg tagtgtaact ttttcagctg
     2461 ctcctgcgag ccttactgga gctcgcccag ccccggggca atttactgca acagcgacga
     2521 taactgttga gattgtgcgc taataggtct gacaacgatt gttcatcaca tcgttgtcat
     2581 ctcacccatt tctttatcac ttttaaatgc atcatgacaa aaagatgaca tgtgggattt
     2641 tcatcttcac atttaaaatc agtaagttat ttggtaattc ctttctgtca taaaaatgtc
     2701 atattcctta catataactg tcacctgttt gtcctatttt gcttctcgta gccaacaaac
     2761 aatgctttat gaatcctccc aggagacatt atgaaagtta tgcgtaccac cgtcgcaact
     2821 gttgtcgccg cgaccttatc gatgagcgct ttctctgtgt ttgcagaagc aagcctgaca
     2881 ggtgcaggtg caaccttccc tgcgccggtg tatgccaaat gggctgacac ttaccagaaa
     2941 gaaaccggta ataaagttaa ctaccagggt atcggttctt ccggtggcgt aaaacagatt
     3001 atcgctaata ccgttgattt tggtgcctct gacgcgccgc tgtctgacga aaaactggct
     3061 caggaaggtc tgttccagtt cccgaccgtg attggcggcg tggtgctggc ggttaacatt
     3121 ccagggctga agtctggcga actggtgctg gatggtaaaa ccctcggcga catctacctg
     3181 ggcaaaatca agaagtggga tgatgaagcc atcgccaaac tgaatccggg tctgaaactg
     3241 ccttcacaaa acattgctgt agtacgccgc gcagatggct ccgggacttc cttcgtcttc
     3301 accagctacc tggcgaaagt gaacgaagag tggaaaaaca acgttggtac tggctctacc
     3361 gtaaaatggc cgatcggtct gggcggtaaa ggtaacgacg gtatcgccgc gttcgttcag
     3421 cgtctgccgg gtgcaattgg ttatgttgaa tatgcttacg cgaagcagaa caacctggcg
     3481 tacaccaaac tgatctccgc tgatggtaaa ccggttagtc cgaccgaaga aaacttcgct
     3541 aatgcagcaa aaggtgcaga ctggagcaaa accttcgctc aggatctgac caaccagaaa
     3601 ggcgaagatg catggcctat tacctctacc acgttcattc tgatccacaa agatcagaag
     3661 aaaccagaac aaggcacaga agtgctaaaa ttcttcgact gggcgtacaa aaccggggct
     3721 aaacaggcga acgacctgga ttacgccagc ctgccggata gtgtagttga acaggttcgc
     3781 gctgcgtgga agaccaatat taaagacagt agcggtaagc cgctgtacta ataaaactcc
     3841 aggccgggta cggtgtttta cgccgcatcc ggcattacaa aatgactttg taaacgcgtt
     3901 taactgaaga gtaacttatg gctgcaacca agcctgcttt taacccaccg ggtaaaaagg
     3961 gcgacataat tttcagcgtg ctggtaaaac tggcggcgct gattgtgcta ttgatgttgg
     4021 gtggcattat tgtctctctg atcatctcct cctggccgag cattcagaaa tttggtctgg
     4081 ctttcctatg gaccaaagag tgggatgcac cgaacgatat ctacggggcg ctggtgccga
     4141 tctacggtac gttggtgact tcgtttatcg cgctgctgat cgccgtcccg gtgagtttcg
     4201 gtatcgccct gttcctgact gagcttgcgc ctggctggct gaaacgcccg ctgggtatcg
     4261 ccattgagct gctggcagcc attccaagta tcgtttacgg catgtggggc ctgtttatct
     4321 ttgcgccgct gttcgccgtt tactttcagg agccggtcgg caatatcatg tcgaatatcc
     4381 cgattgttgg cgcgctgttc tctggccccg catttggtat cggtatcctc gcggcaggcg
     4441 tgatcctcgc catcatgatt attccgtaca ttgcggcggt aatgcgtgat gtgttcgaac
     4501 aaaccccggt gatgatgaaa gagtcggcct acggtattgg ctgcaccacc tgggaagtta
     4561 tctggcgtat cgttcttccg ttcaccaaaa atggtgttat cggcggtatc atgctggggc
     4621 tgggccgcgc gctcggtgaa accatggcgg tgacctttat catcggtaac acctaccagc
     4681 tcgacagcgc ctcgctgtac atgccgggca atagtatcac ctctgcgttg gcgaacgaat
     4741 ttgcggaagc ggaatccggt ctgcacgttg ccgcactgat ggaactgggc ctgatcctgt
     4801 ttgtgattac cttcatcgtc ctcgccgcat cgaagtttat gattatgcgc ctggctaaga
     4861 atgagggggc acgctaatgg ctatggttga aatccaaacc actgcggcgc tggctgaatc
     4921 tcgccgcaaa atgcaggcgc gtcgccgcct caaaaaccgt attgcgctga cgctctcgat
     4981 ggcgacgatg gccttcggcc tgttctggct gatctggatt ttaatgtcca ccatcactcg
     5041 cggtatcgac ggtatgtcgc tggcgctgtt cactgaaatg acgccgccgc ccaatacgga
     5101 aggtggtggt ctggcgaacg ccctggcggg tagcgggctg ttaattttgt gggccacggt
     5161 attcggtacg ccgctgggca ttatggcggg gatttatctg gcggaatatg gtcgtaaatc
     5221 ctggctggca gaagtgattc gcttcattaa cgacattctg ctctccgcgc cgtcgattgt
     5281 ggttggtctg tttgtttaca ccatcgtggt ggcgcagatg gagcacttct ctggctgggc
     5341 gggcgtgatt gccctggcgc tgttgcaggt gccgattgtt atccgcacca ccgagaacat
     5401 gctgaaactg gtgccggaca gcctgcgtga agcggcttat gcgctgggta caccgaagtg
     5461 gaagatgatc tctgcgatta cgctgaaagc gtcggtgtcc gggatcatga ccggtatcct
     5521 gctggcgatt gcccgtattg ctggtgaaac cgcgccgctg ctgtttaccg cgctctccaa
     5581 ccagttctgg agcacggaca tgatgcagcc gatcgccaac ctgccggtga cgatctttaa
     5641 gtttgcgatg agcccgtttg cggaatggca acaactggcc tgggccgggg tattgattat
     5701 taccctgtgc gtactgctgc tgaacattct agcgcgcgtt gtttttgcga agaataaaca
     5761 cggttaacac tttgccggat gcggcgtgaa cgccttatcc ggcctacggt aagcctgatt
     5821 agcgaagtgc atcaggcacg atgaggaaaa gattgcaatg agtatggttg aaactgcccc
     5881 gagtaaaatt caggttcgta atttgaactt ctactacggc aaattccatg ccctgaaaaa
     5941 catcaacctg gatatcgcta aaaaccaggt tacggcgttt atcgggccgt ccggctgcgg
     6001 taaatcgacg ctgctgcgta ccttcaacaa aatgtttgaa ctgtacccgg agcagcgtgc
     6061 ggaaggtgaa attctgcttg atggcgacaa catcctgacc aactctcagg atatcgcact
     6121 gctgcgtgcg aaagtgggca tggtgttcca gaaaccgacg ccgtttccga tgtccatcta
     6181 cgacaacatc gcttttggcg ttcgtctgtt tgagaagctc tcccgtgccg acatggacga
     6241 gcgcgtgcag tgggcattga ccaaagccgc attgtggaac gaaaccaaag ataaattgca
     6301 ccagagcggt tactctctct ctggtggtca gcaacagcgt ctgtgtattg cgcgtggtat
     6361 cgccattcgc ccggaagtgc tgctgctcga cgaaccgtgt tcggcgctcg accctatctc
     6421 taccgggcgt attgaagagc tgatcaccga actgaagcag gattacaccg tggtgatcgt
     6481 cacccacaac atgcagcagg ctgcgcgttg ttccgaccac acggcgttta tgtacctggg
     6541 cgaattgatt gagttcagca acacggacga tctgttcacc aagccagcga agaaacaaac
     6601 agaagactac atcaccggtc gttacggttg attcaggagt gcgttatgga cagtctcaat
     6661 cttaataaac atatttccgg ccagttcaac gccgaactgg aaagtatccg cacgcaggtg
     6721 atgaccatgg gcggcatggt ggagcagcag ctttctgatg caatcaccgc gatgcataac
     6781 caggacagcg atctggcgaa gcgcgtgatc gaaggcgaca agaacgtcaa catgatggaa
     6841 gtggcgatcg atgaagcctg cgtgcgcatt atcgccaaac gtcagccgac ggcgagcgac
     6901 ctgcgactgg ttatggtgat cagtaaaacc attgccgagc tggagcgtat tggcgacgtg
     6961 gcggacaaaa tctgccgtac tgcgctggag aaattctccc agcagcatca gccgttgctg
     7021 gtaagtctgg agtcgctggg ccgtcatacc atccagatgc tgcacgacgt gctggacgcg
     7081 ttcgcgcgga tggacattga cgaagcggta cgtatttatc gtgaagataa aaaagtcgat
     7141 caggaatacg aaggtattgt tcgtcaactg atgacctaca tgatggaaga ttcgcgtacc
     7201 attccgagcg tacttactgc gctgttctgc gcgcgttcta tcgaacgtat tggcgaccgc
     7261 tgccagaata tttgtgagtt tatcttctac tacgtgaagg ggcaggattt ccgtcatgta
     7321 ggcggtgatg agctggataa actgctggcg ggaaaagata gcgacaaata attcaccaga
     7381 caaatcccaa taacttaatt attgggattt
//
LOCUS       DAJVUP010000187         7320 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.187, whole genome shotgun sequence.
ACCESSION   DAJVUP010000187 DAJVUP010000000
VERSION     DAJVUP010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7320
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.187"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..460
                     /gene="ytfB"
                     /locus_tag="OQQ75_003735"
     CDS             <1..460
                     /gene="ytfB"
                     /locus_tag="OQQ75_003735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein YtfB"
                     /protein_id="HCS1977911.1"
                     /translation="REAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQEG
                     QPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGA
                     GKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR"
     gene            complement(444..1091)
                     /locus_tag="OQQ75_003736"
     CDS             complement(444..1091)
                     /locus_tag="OQQ75_003736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709992.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HCS1977912.1"
                     /translation="MYLDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSK
                     QTVYHHFGNKENLFIKVLEYTWNDIRQKEKALDFSDLPPQKAIEKIIDFTWDYYIANP
                     WFLKIVHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNI
                     NIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE"
     gene            1303..2094
                     /locus_tag="OQQ75_003737"
     CDS             1303..2094
                     /locus_tag="OQQ75_003737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709993.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HCS1977913.1"
                     /translation="MKSTRPVAVITGAARGIGKGCAQELARGGFNLLINDRPDADSVE
                     KLHITQQECLAEGVEVICFPADVGDLSLHEEMLDAAQNQWGRLECLLNNAGISVKKRG
                     DLLDLEPDSFDQNIAINTRAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIML
                     AMNRGEYTIAKTAVSAAARLFAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAK
                     GLVPWGRWGYPADIASTVRAMAEGKLIYTCGQAVAIDGGLSMPRF"
     gene            2104..2946
                     /locus_tag="OQQ75_003738"
     CDS             2104..2946
                     /locus_tag="OQQ75_003738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HCS1977914.1"
                     /translation="MRDLLQRPDLFSINTATLGYKTPLPAIIDACAARGIGAIAPWRR
                     ELQGEDLQQITRQLAASNMSVSGLCRSTYYTAPTLAERKLAIDDNRRALDDAAVLNAA
                     CYMQVVGGLPTGTKDLYEAREQVKQGIRQLLPHSKDVGVPIALEPLHPMTAADRSCLC
                     TLRQALDWCDELDPDGEFGLGVAVDVYHVWWDPDLASQILRAGKRILAFHVSDWLVPT
                     TDLVNDRGMPGDGVINIPSIRRLVENAGFNGAIELEIFSPYWWQKDINSTLDISVDRI
                     AHYC"
     gene            2956..3732
                     /locus_tag="OQQ75_003739"
     CDS             2956..3732
                     /locus_tag="OQQ75_003739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HCS1977915.1"
                     /translation="MSDQPVLFSRVAASCRLTLNREDKCHAINEEMIESLDHYLNEIE
                     NDTTLRLVELTATGDKFFCAGGDIKSWSAYSPLDMGRKWIKRGNDVFNRLRNIPQLTV
                     ANLNGHTIGGGIELALCCDIRIARPGAKFSNPEVMLGMVPGWMGIERVLNQVGPVVGR
                     QMLMLGKRLTAQEAQAANLIDEVVEKEQVESWMANQLAQLEKCGPVALAHIKQLILAL
                     ENKHADYPHQLLAGLMSATQDCQQATRAFAEKSSVSFHNQ"
     gene            3742..5283
                     /locus_tag="OQQ75_003740"
     CDS             3742..5283
                     /locus_tag="OQQ75_003740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS1977916.1"
                     /translation="MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFL
                     QTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEA
                     YCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGK
                     TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDV
                     LEAGAIEPRRVKLPGILVDGIVEHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHP
                     VRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLWLSVEQGVHNGMMLD
                     DAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGG
                     FLEIAQNARKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQ
                     SGQEVLYITERAVFQLTAEGVELIEIAPGVEIERDILPYMAFRPIIKHPRLMESSLFT
                     PMEDA"
     gene            5280..7320
                     /locus_tag="OQQ75_003741"
                     /pseudo
     CDS             5280..7320
                     /locus_tag="OQQ75_003741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591423.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
BASE COUNT         1814 a         1826 c         1933 g         1747 t
ORIGIN      
        1 gcgtgaagcg cagttagata ttcagtcgca atcacaaccg ccgacagaag aacagctgcg
       61 ggcgcaatta gtcacaccac aaaatgatcc tgatcaggtg gctccggtcg ctccagaacc
      121 tatacaggaa ggccagccag aagagcagcc gcaaactacc caaacgcaac cattccagcc
      181 agatagcgga attgataatc aatggcgctc ttaccgtgtc gaacccggta aaacgatggc
      241 gcagctgttc cgcgaccacg gactgcccgc taccgatgtc tatgcaatgg cgcaggtaga
      301 aggcgcgggt aagccgctga gtaatttgca aaacgggcag atggtgaaaa ttcgccagaa
      361 cgccagcggc gtggtgacgg gcttaaccat tgatacgggg aataatcaac aggtcctgtt
      421 cacccgccag ccggatggca gttttattcg tgcgcggtag atgaagggtc aaccaaaagc
      481 cagctaagga ttgtctcttt gatgacctta cgtctggctt ccagtgcctg gggggaaacc
      541 atactgatat gataaaccag gccaagcgta tgctggttga tcaaataata tccgccaagc
      601 gcagcaatat taatattcac ctgcaatggg tcgatatctg gcttaaaaat attgtgtttc
      661 ttcccttcat ccaataagga ttccattaac tgcaagtgcg catggttaat ttctaagaga
      721 cgctgtgatt ttgcataatg cacaccttta ctttgatttt cactatgcac aatttttaaa
      781 aaccaggggt tagcaatata ataatcccat gtaaaatcaa taattttctc aatagctttt
      841 tgtggcggaa gatctgagaa atcaagggcc ttttcttttt gtcgaatatc gttccaggta
      901 tattccagta ctttaataaa taaattttct ttattaccaa agtgatgata aaccgtctgt
      961 ttactacacc ccgcagcctt aacaatatta tcgaccctgg ccccttcata accatattcg
     1021 gcaaattcat taaccgcgca taacagcagc ttttccttca ggctctgtac gttgctggta
     1081 tcaagataca taacgcttcc ccacgacctc ttcgtggtga ctatcataac ctgatttgat
     1141 ttcagcttca gaaaaaaggg caaaaacttg tactttcatc aggttatcaa atgtcctgtg
     1201 atcgtcatcg catatcaacc aactagatgg ttgacctttt tatcctccag tcgcaagcta
     1261 atcatcacca aggaaacaaa attcaaaaaa gagagctatt gtatgaaatc cactcgtcct
     1321 gttgccgtga ttaccggagc cgctcgcggt attggaaagg gctgtgcgca ggagcttgct
     1381 cgtggcgggt ttaacctgct gattaacgat cgtcccgatg ccgacagcgt agaaaaactg
     1441 catatcacac aacaagaatg tttggcggaa ggcgtggaag tgatttgctt ccctgctgat
     1501 gtcggtgatc tatctctgca tgaggagatg ctcgacgcgg cgcaaaacca gtgggggcgg
     1561 ctggagtgtc tgctcaataa cgcggggatt tcagtgaaaa aacgcggtga cctcctcgac
     1621 ctcgaaccag acagcttcga tcaaaacatt gccattaaca cccgcgcgcc gttcttcctt
     1681 gctcaggcat tcagtaagcg cttactggca cagccgaaac cggaagcgga gctgccgcac
     1741 cgctcgatta ttttcgtcag ttccatcaac gccatcatgc tggcgatgaa tcgcggcgaa
     1801 tacaccattg ccaaaaccgc cgtttctgcc gctgctcgtc tgtttgctgc tcgcctttgt
     1861 aatgaacaaa ttggcgttta tgaagtgcgc cctggtctca tcaaaactga tatgactatt
     1921 ccggcaacgg cttattacga cgaactgatt gccaaaggtc tggtgccgtg gggacgttgg
     1981 ggttatccgg ctgatattgc ttccaccgtc cgcgcgatgg cggaaggtaa actgatttac
     2041 acctgtggtc aggcggtcgc catcgacggc ggcttaagta tgccgcgctt ctgaggctga
     2101 atcatgagag atctgttaca acgcccggat ttattcagta tcaataccgc gacactgggc
     2161 tataaaacgc cgctacccgc cattattgat gcctgcgccg cacgcggtat tggcgcaatt
     2221 gccccctggc gcagggagtt gcagggtgaa gatctccagc aaatcacccg ccagcttgcc
     2281 gccagtaaca tgagcgtttc cggtttgtgc cgtagcactt actacaccgc gccgacactg
     2341 gcggaacgca aactggcgat tgatgataac cgccgggcgc tggacgacgc agcggtgctt
     2401 aacgccgcct gttatatgca ggtggttggc ggtctgccaa cgggcactaa agatctatat
     2461 gaagcgcgag aacaagtgaa acaagggatt cgccagttgc tgccacattc gaaagatgtc
     2521 ggcgtgccaa ttgcgctgga gccactgcac ccgatgacag ctgccgatcg ctcttgcctg
     2581 tgcacgttac gtcaggcgct ggactggtgt gatgaactcg atcccgatgg tgagtttggc
     2641 ctcggcgtgg cggtggatgt ttatcacgtc tggtgggatc cggatctcgc cagtcagatc
     2701 ctgcgtgccg gaaaacgcat cctcgcgttt catgtttccg actggttagt gccgaccact
     2761 gatctggtca atgaccgtgg tatgccggga gatggcgtca tcaatattcc gtcaattcgt
     2821 cggctggttg aaaacgccgg atttaatggt gctattgaac tggaaatatt ctcgccttac
     2881 tggtggcaga aagatattaa cagcacgctg gatattagcg tcgatcgcat cgcgcattat
     2941 tgttaaggaa tgatcatgag tgaccaaccc gttctgttca gcagagtggc ggcttcctgc
     3001 cgcctgacat tgaaccgtga agataaatgt catgctatta acgaagagat gatcgaatct
     3061 ctcgaccatt atttaaatga aattgaaaac gacaccacat tacgattagt cgaattaacg
     3121 gcaaccggcg ataaattctt ttgtgcgggc ggcgatatta aatcgtggtc ggcctattcg
     3181 ccattagata tgggcagaaa atggattaaa cgcggtaatg acgtttttaa tcgcctgcga
     3241 aacatacccc aattaaccgt tgcgaatctc aacggtcata ccatcggcgg tggtattgaa
     3301 ctggccttgt gctgcgatat tcgtattgcc cgccccggcg cgaaattctc taacccggaa
     3361 gtgatgctcg gcatggtgcc tggctggatg ggcattgaac gtgtgcttaa tcaggtcggt
     3421 ccggtggtcg gtcgccagat gctgatgctg ggtaaacgcc tgacggcgca ggaagctcag
     3481 gcggcgaatt taattgatga agtggtagaa aaagaacagg tggaaagctg gatggcgaac
     3541 cagttagcgc agctggaaaa atgcggtccg gtggcactgg cgcatattaa gcaactgatt
     3601 ctggcactgg aaaataaaca tgccgattac ccgcaccagc tactggccgg attaatgtcc
     3661 gccactcagg attgccagca ggcgacgcgc gcctttgccg aaaaaagtag cgtgagcttc
     3721 cataatcaat aaggaaattg tatgcgtaag ataacaaccg ccgaggcact ggcggcgcaa
     3781 attcaggacg gtgcgactat tgctattagc ggtaacggcg gcggtatggt agaagccgac
     3841 catattctgg ctgctattga agcgcgtttc ctgcaaaccg gacaccctcg cgacctgacg
     3901 ctaatccact cgctgggtat tggcgatcgc gactgcaaag gcactaaccg ttttgcgcac
     3961 gcagagatgc tcaaacgcat tattgccggg cactttacct ggtcgcccaa aatgcaggcg
     4021 ctggtaaaaa ataacacgat tgaagcctac tgctttcctg gtggcgtgat tcaggcactg
     4081 ctacgggaga tcggctccgg acgtccgggg ctttttaccc acgttgggct gggatcgttt
     4141 gttgatccac gcaatggcgg cggtaagtcg aatgaatgca ctaccgacga cctggtagaa
     4201 ctgattgaaa tcgacggtaa aaccaaactt cgttatcgcc ctttcaaagt ggattacgcg
     4261 attttgcgtg gcacttatgc cgatcctcga ggcaacgtca gccttgaaga agaagcgatt
     4321 gatatggata gctattccat ggcgctggca gcacacaaca gcggcggcaa agtgttcgta
     4381 caggtacgcg atgtgctgga agctggcgcg attgaaccac gccgagtcaa attaccgggc
     4441 attctagttg atggcatcgt tgaacaccgc aaacagccac aaacctatct tggcggttac
     4501 gacctgacca tcagcggcca acatcgccgt ctgagttcta acgacgctat tgaactggtt
     4561 agtcatccgg tacgtcgcct gattgcccgt cgggcagcac gcgaactggt agctggcgct
     4621 tcaaccaact ttggctttgg tattcccggc ggcgttccag gagtagcgct gcgcgaaggc
     4681 gttccttacc aaagtttatg gctgagcgtc gagcaaggcg tacataacgg catgatgctg
     4741 gatgatgcgt ttttcggctg cgcccgcaac gccgatgcca ttattccatc actcgatcaa
     4801 tttgagttct acagtggcgg agggatcgat atcaccttcc tcggcatggg agagatggat
     4861 cagtacggta acgtcaacgt ctcccatctc aatggcaatc tgattggccc cggcggattt
     4921 ctcgaaattg cgcaaaatgc ccgtaaagtg gtgttctgcg gcacgttcga cgctaaaggc
     4981 agcaagatcg atataacacc agatggcttg catatcgccc agtcaggtca aatccctaaa
     5041 ctggttacca aggtggaaaa aatcactttt agcgccgcct acgcacagca aagtggtcag
     5101 gaagtgttgt atatcactga acgcgcagta ttccagttaa cggcagaagg cgttgaatta
     5161 attgaaatcg cgccgggtgt ggagattgag cgcgacattc tgccgtatat ggctttccgt
     5221 ccaattatca agcacccacg cctgatggaa agtagcctgt ttacgccgat ggaggatgca
     5281 tgagtcagct tgatgacacc atccttgatg cgctgacgca cgttactttc ccaaagggtt
     5341 ttgcacaggc agagcccgca tgggttgtca cggtagacgg tgttaattac ccactctggc
     5401 aaacagatgc cctggtagtc ggcagtggtg cagcaagatt acgtgcggca gttgaactta
     5461 aacgccgcca gcaaaatgtg ctgatcgcta ccgccgggtt atatatgggg acgtcggcat
     5521 gttctggttc cgataaacag acactattta ccgccgctac cgcgggcaac ggcgacaact
     5581 tcaccaaact ggcagaggca ctggcgagcg gtggggcgat ggatcacgac accgcttatg
     5641 tcgaagcggt aggttctctg cacactctag gcgggttgca atatcttggt ctggaattac
     5701 cggaagatcg ctatggcgcg attcttcgtt atcaaaccga ccatgacgaa gccgggcgtg
     5761 caacctcgtg tgggccgcgt acctcaaggt taatggtgaa agtgctgttg gaagaagtac
     5821 agcgcctcgc cattccagtg ttgaccagtg caacagtgat taaactgctg catcagcgtg
     5881 acgaaaacgg cgaagaccgc gtggcagggg caatcctcgc gaccggtcat cgcgcccata
     5941 acccatgggg gctggcaatt gtgactgcgc ccaatgtggt actggcaacg ggcggaccgg
     6001 gcgagcttta tcgcgacagt gtttatccac ataaatgctt cggctcgctg gggctggcgc
     6061 tggaggaagg tctgacgcta accaatctga ccgaaagcca gtttggtata ggcacgccgc
     6121 gtagcacgtt tccgtggaat ttatccggca cctatgtaca ggtgatcccg tatatctatt
     6181 ccgtggatgc tgagggtaac gagtataact tcctcgcgat tactatcgca ccacccagga
     6241 gctggcttca aacattttcc gtaaaggcta tcagtggccg ttccacgcca ctcgggtgat
     6301 ggattttggc tccagcttgt tagatatggc agtagcgcaa gagcagcaat cagggcgtca
     6361 ggtatttatg gatttcaatc gcaatcctga agcggtgccg ggtgacctgc cgttctcatt
     6421 agatcgactg gacgacgacg ttcgcgcgta tctggaaaat aacgacgctc tggcaccatc
     6481 gcccatcgaa cggctgcaac gaatgaatcc gctgtctatc tcgctgtata agatgcacgg
     6541 ttacgatctc accacacagc ctttgcagtt tgccatgaat aatcagcata tgaatggcgg
     6601 cattgaagtg gatatctggg gacaaacctc cctgcccggc tgtttcgccg tgggggaagt
     6661 tgctggcaca cacggcgtca ctcgccctag tggtgcagca ttgaatgccg ggcaggtttt
     6721 tgctgttcgt ctggcacgtt ttattggttg cacgcaaaag cggtctgttg agggtgatgt
     6781 cgcgcagctg gtagcctcat ctctgaatat agtcagagaa gttatcgctc aggcactggc
     6841 aaacgagaac ggaatggcgc tggtaacggt gaaagacaaa atccaggcgc gaatgtctga
     6901 ttacgccgga tttatttgtc atgccgataa agttcgtcat gccacccgtg acgccctgct
     6961 gctaagtgag tttgtacaac aacacggttt aaccatcaat cacgcaggcg aaattgccga
     7021 actgtttatg tggcggcata tgacgctgac ttctgccgcc gtattaacgc aattgacgca
     7081 ttatattgac gcaggtggtg gcagtcgtgg agcacggatg gttattgatc cacaaggcaa
     7141 atgcctccca caaactcgtc gcggcgcaaa agaagaatgg cgttttcgct ctgaacgtgc
     7201 tgaagacaaa aatcacagat taacgattca atattcgcaa ggttctttta ttaccgaagt
     7261 gaagtcttta cgtatgcaac cgtgtattaa aggtatttac tttgaaaaaa actggccaga
//
LOCUS       DAJVUP010000188         7227 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.188, whole genome shotgun sequence.
ACCESSION   DAJVUP010000188 DAJVUP010000000
VERSION     DAJVUP010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7227
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.188"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..421
                     /gene="speG"
                     /locus_tag="OQQ75_003742"
     CDS             <1..421
                     /gene="speG"
                     /locus_tag="OQQ75_003742"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HCS1977917.1"
                     /translation="TTSHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIIS
                     PEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFTVEGELMHE
                     FFINGQYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ"
     gene            complement(424..1134)
                     /locus_tag="OQQ75_003743"
     CDS             complement(424..1134)
                     /locus_tag="OQQ75_003743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416102.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfC family lipoprotein"
                     /protein_id="HCS1977918.1"
                     /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSDEFDFDPLRG
                     PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET
                     LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
                     NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG
                     VKPAVERVYTIKNTIDYY"
     gene            1242..1520
                     /locus_tag="OQQ75_003744"
     CDS             1242..1520
                     /locus_tag="OQQ75_003744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
                     /protein_id="HCS1977919.1"
                     /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE
                     SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSANVSAPAQST"
     gene            1747..4157
                     /locus_tag="OQQ75_003745"
                     /pseudo
     CDS             1747..4157
                     /locus_tag="OQQ75_003745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416104.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
     gene            4218..6641
                     /locus_tag="OQQ75_003746"
     CDS             4218..6641
                     /locus_tag="OQQ75_003746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416105.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HCS1977920.1"
                     /translation="MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVR
                     AAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRG
                     RSIRRRMNHPDRLKYPMKRVGKCGEGKFERISWDEALDTISDNLRRILKDYGNEAVHV
                     LYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDI
                     ANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLP
                     IRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEG
                     PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM
                     LSVLTGNVGINGGNSGVREGSWDLGGEWFPMLENPVKTQISVFTWTDAIDHGTEMTAT
                     RDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTAS
                     AKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRL
                     GPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMLDYEEMKTTGIFKKKCPEEHYVAFRA
                     FREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRK
                     TYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNG
                     EMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSH
                     SNLVQIEKV"
     gene            6652..>7227
                     /gene="dmsB"
                     /locus_tag="OQQ75_003747"
     CDS             6652..>7227
                     /gene="dmsB"
                     /locus_tag="OQQ75_003747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HCS1977921.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELGCKDFKDLGPEVSFRRIYEYAG
                     GDWQEDNGIWHQNVFAYYLSISCNHCDDPACTKVYPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICIESCPLRALEFGPIEELRQ
                     KHGTLAAVAPLPRAHFTKPNIVIKPNANSRPT"
BASE COUNT         1946 a         1822 c         1757 g         1702 t
ORIGIN      
        1 gaccacttca catattcacg atcagagcga acgacgcttt gtggtggaat gtgacggcga
       61 aaaagccggt ctggtggagc tggtggaaat taaccatgta catcgccggg cagaatttca
      121 gataattatc tccccggagt atcaggggaa aggtctggca acccgtgccg ccaaattagc
      181 aatggactat ggcttcaccg ttctcaatct ctataagctg tatctgatcg tcgataaaga
      241 gaatgaaaaa gcgattcaca tttaccgcaa gcttggcttt acggttgaag gtgaattgat
      301 gcatgagttt tttattaatg gtcaatatcg taatgccatt cgcatgtgta tattccagca
      361 tcagtatctg gcagagcaca aaacaccggg tcagactctc ctgaagccga ccgcacaata
      421 gcattaataa taatcgatcg tatttttgat ggtgtaaacc cgttcgacgg cgggttttac
      481 tccttcatca acaatgatca gctgacagtc caccggattg gcgtgactgt catattcaca
      541 gctctgtttt acattaccaa ctcgttgatt attcagtaaa gtaaccgctg tgtaatctaa
      601 ttttttgatc gggtccgttg atggcgtggc gctgacagat aatgttttgt cgttactttt
      661 cgtggtttta cccagtggat aaccctgatc atcatagcga tattccatct gcatttgttt
      721 gctgctggct ttaatcacga agccattatc atcggtttcc caactcaccc cggcagaagg
      781 taattctgct agctggcatt ttccctgtaa acgtactctc ttctccagcg tctcggcatc
      841 acggtaataa ttggcgtcca gtaccagagc gaccacggta ttattttcca gatccagtaa
      901 ttcgagtgaa tcaaaacagc cttcttccga caaagtccca gaaacacgtt tcgtcacttc
      961 accttgctca tccattaatg tctgagtgaa atcttttacc ggaccacgca gcggatcaaa
     1021 atcgaattca tcagagaaac tggccatctc aggggtaaat gaaagtgtta cctctgtgcg
     1081 gtcacatcct gtgaggaata tcgcgagtaa gcatggtagt aatttgtatt tcacaacagt
     1141 caccagagag tagagatgat tctcaatcat agtagcaaat acagtacttt acacgttaaa
     1201 tgctatgctt aaagaagtta tcttcgcgta aggagcttat gatgaaactc tcaacctgct
     1261 gtgccgcgct tctgctcgcc ctcgcctcac ccgcggtact cgccgcgccg ggatcctgtg
     1321 agcgcataca gagcgatata tcacagcgca ttatcaataa tggcgtaccc gaaagcagct
     1381 tcacattaag tattgtaccc aatgaccagg ttgatcagcc tgattcccag gtcgtcgggc
     1441 attgtgctaa tgatacgcat aaaattctct acacccgcac caccagcgct aacgtctctg
     1501 ctcccgcgca gtctacctag gatggcgcgc ctgccgaacc gcagtaatac attatcgact
     1561 gaacgccgga tatgacacat ccggcgattt gaacatacaa cataatccca ccttattact
     1621 catacccttc tattgatgtg gattaataat tcttaaccca aaatgggtat acccccctct
     1681 attgttagcg cgctaaatat tcaatacata aacatttata taacgataaa gaacagggag
     1741 tgagttatgt ccaaaaatga ccgaatggtg ggcatcagcc gcagaacact cgttaaatca
     1801 accgcgatag gttctctggc gctggctgca ggcggttttt ctttaccgtt caccctgcgc
     1861 agtgcagcgg caacggtaca acaggccagc gaaaaagtga tctggggtgc ctgttccgtc
     1921 aactgtggta gccgctgtgc acttcgtcta catgttaaag ataatgaagt gacctgggtg
     1981 gaaactgaca ataccggcag cgatgagtac ggcaaccatc aggtacgcgc ctgtttgcgc
     2041 ggtcgctcca tccgccggcg tattaatcat cccgatcgct tgaattaccc aatgaaacgc
     2101 gtgggtaaac gcggtgaagg caaattcgaa cggattagct gggatgaagc cctggatact
     2161 atcgccagta gcctgaaaaa aaccgtcgaa caatatggca atgaggctgt atatattcag
     2221 tactcttcgg ggattgttgg cggcaatatg acccgctctt cgccatcagc ctcggcggtc
     2281 aaacgcctga tgaactgcta cggcggttca ctcaatcagt atggctccta cagcaccgca
     2341 caaatttcct gtgccatgcc ctacacctac ggcagtaatg atggcaacag caccacggat
     2401 attgaaaaca gcaagctggt cgtgatgttt ggtaacaacc cggcagaaac ccgcatgagc
     2461 ggcggtggca tcacttatct tcttgaaaaa gcgcgcgaga aatcgaacgc caaaatgatt
     2521 gttatcgatc cgcgatatac cgatacggct gctggtcgtg aagatgaatg gcttcctatt
     2581 cgcccgggca ccgatgccgc gctggttgcg ggtattgcct gggtattgat taacgaaaat
     2641 ctcgttgatc aaccttttct cgataaatac tgcgtcggct atgacgaaaa aaccttaccc
     2701 gcagatgcac caaaaaatgg tcactataaa gcctatattc ttggtgaagg tgatgataat
     2761 acagcgaaaa cgccgcagtg ggcttcgcaa attaccggta tcccggtgga ccgtatcatc
     2821 aaactggcgc gtgaaattgg cacagcaaaa cccgcttata tctgccaggg ctgggggccg
     2881 caacgccagg caaacggcga actgactgca cgcgctattg ctatgttgcc tattttgacg
     2941 ggcaatgtcg gcatcagcgg cggaaatagt ggcgcgcgtg aatcgaccta taccattacc
     3001 atagaacgcc tgccggtgct ggataatccg gtcaaaacgt caatctcctg cttcagctgg
     3061 acagatgcta tcgatcatgg tccgcaaatg acggcaatcc gcgacggcgt ccgcggcaaa
     3121 gataaactgg atgtgcccat taagttcatc tggaactacg cgggaaatac cctcgttaat
     3181 cagcattctg acatcaacaa aacgcatgaa attctgcagg acgaatcgaa atgcgaaatg
     3241 attgtggtca tcgaaaactt tatgacctca tcggcaaact gccagacctg atgaccgttg
     3301 agcaggaaga tattattcct aacgactacg ccggtaacat gggatatctc attttcctcc
     3361 agcctgtcac cagcgaaaaa ttcgaacgca aaccgattta ctggatcctg agtgaagtcg
     3421 cgaaacgtct tggacctgac gtctatcaaa agttcacaga aggtcgcacg caggaacaat
     3481 ggttacaaca tctgtacgcc aaaatgcttg ccaaagatcc ggcgttaccg tcttacgacg
     3541 aactgaaaaa aatgggtatc tataagcgta aagatcccaa tggccatttt gtcgcctaca
     3601 aagcatttcg tgacgacccc gaggcaaatc cacttaaaac gccttccggt aagattgaaa
     3661 tttattccag caggctggcg gaaattgccc gtacctggga actggaaaaa gatgaagtga
     3721 taagcccatt gccagtttat gcctcaacct ttgaaggctg gaactcccct gaacgtagaa
     3781 ccttcccact gcaactgttt ggtttccatt acaaatcccg tactcactcg acctacggca
     3841 atattgatct cctgaaggct gcctgccgtc aggaggtgtg gatcaaccct atagatgcgc
     3901 agaaacgtgg gattgccaac ggcgatatgg tgcgggtgtt taaccatcgt ggcgaagttc
     3961 ggctaccagc caaagtaaca ccacgtattc tccctggagt tagcgctatg ggccagggag
     4021 cctggcacga ggccaatatg tctggcgata aaatcgacca tggcggctgt gtgaatacgc
     4081 taaccactct gcgcccttca ccactggcga agggaaaccc gcagcacact aatctggtcg
     4141 agatcgaaaa aatataaccc acgacaacca taaattctgg catgacattt tgtttgaaaa
     4201 gcaataagtg agtaatgatg aaaatccata ccacagaggc gctcatgaag gctgaaatca
     4261 gccgtagaag tctgatgaaa acctccgcac ttggcagtct tgcgctggca agcagtgctt
     4321 tcactctgcc attttcccaa atggtccggg cggcagaggc tccggtagaa gagaaagcgg
     4381 tctggagttc ctgcaccgtt aactgcggga gccgctgtct gttacgtttg catgtgaaag
     4441 atgacaccgt gtactgggtg gagtctgata cgacaggtga cgacgtctac ggtaatcatc
     4501 aggttcgagc gtgtttacgc gggcgctcta tccgccgacg gatgaatcat cctgataggt
     4561 tgaaatatcc catgaagcgc gtcggcaagt gcggtgaagg taaatttgaa cggataagtt
     4621 gggacgaagc cctggatacc atcagtgata atcttcggcg gatcctgaaa gattacggca
     4681 atgaggctgt acatgtcctg tacggaacag gcgtagatgg cggaaacatc accaactcaa
     4741 acgtcccgta ccgtctgatg aactcttgcg gtggttttct cagtcgctat ggcagctaca
     4801 gtaccgcaca gatcagtgcc gcaatgagtt atatgttcgg tgccaatgat ggcaacagcc
     4861 cggatgatat cgccaatacg aaactggtcg ttatgttcgg aaataacccg gcagaaacgc
     4921 ggatgagcgg cggtggtgtc acttactacg tcgagcaagc ccgcgaacgt tcaaacgcac
     4981 gcatgatcgt catcgatcca cgttataacg acactgctgc cgggcgtgaa gatgaatggc
     5041 tgcctattcg ccctggcacc gatggcgcac tggcctgtgc gattgcctgg gtactgatta
     5101 ctgaaaacat ggtcgatcag ccatttctcg acaaatattg tgttggttac gatgaaaaaa
     5161 cgctgcccgc caacgcacca cgtaacgcgc attataaagc ctatattctg ggcgaagggc
     5221 ctgacggcat agctaaaacg ccggaatggg cagcaaaaat caccagcatc ccggcagaaa
     5281 aaattatcca gttggcgcga gagatcggtt cagcaaaacc tgcttatatt tgtcagggtt
     5341 gggggccaca acgacattcc aacggcgagc aaacgtcccg cgctattgcc atgctttccg
     5401 ttctcaccgg taacgttggc ataaacggcg gcaactcagg tgtacgcgaa ggtagctggg
     5461 atctgggggg agaatggttc ccgatgcttg agaatcctgt taaaacgcag atttccgtct
     5521 ttacatggac agatgccatc gaccatggta cggaaatgac cgcgacccgt gatggtgttc
     5581 gtggaaaaga aaaactggat gtccccatca agtttttatg gtgctacgcc agtaacacat
     5641 tgatcaatca acatggcgac atcaatcaca cccatgaggt gcttcaggat gacagcaagt
     5701 gcgagatgat tgttggcatt gaccacttca tgacggcctc ggctaagtat tgcgatatcc
     5761 tgttgcccga cctgatgcca acagagcaag aagaccttat ctctcatgaa tctgcaggga
     5821 atatgggcta tgtgatcctc gcccaacccg caacctcagc aaaatttgaa cgcaaaccca
     5881 tctactggat gctgagtgaa gtcgccaaac gcttaggacc agacgtttat caaaccttta
     5941 ctgaaggtcg cagtcagcat gaatggatca aatatctcca tgcgaaaacg aaggaacgta
     6001 accctgagat gctcgactac gaggagatga aaacgaccgg gatctttaag aaaaaatgcc
     6061 cggaagaaca ctacgtcgct ttccgcgcat tccgtgaaga tccacaggca aacccgttga
     6121 aaacaccttc ggggaaaatc gaaatttatt ctgaacgact ggcgaagatt gcagatacct
     6181 gggaattgaa aaaagatgaa attattcatc cccttcctgc gtatacccca ggttttgatg
     6241 gctgggacga tcccctgcgg aaaacctatc cactgcagtt aacgggcttc cactacaaag
     6301 cgcgtaccca ctccagctac ggcaatattg atgtgttaca gcaggcctgc ccacaagagg
     6361 tgtggatcaa ccccattgat gctcaggcac gcggtatccg tcatggcgat accgtgcggg
     6421 tatttaacaa taatggagaa atgctgattg ccgcaaaagt gactccgcgt attctgcctg
     6481 gcgttaccgc catcgggcaa ggtgcgtggc ttaaagcgga tatgtttggt gaccgggtcg
     6541 atcacggcgg cagtatcaat attctgacct ctcaccgccc ttcaccgctg gcaaagggaa
     6601 acccgtcgca cagcaatctt gtccagatcg aaaaggttta aggagtagcc catgaccaca
     6661 caatatggat tttttatcga ttccagccgc tgtactggct gtaaaacctg cgaactgggg
     6721 tgcaaagatt ttaaagatct tggcccggaa gtcagtttcc gccgtattta tgaatatgct
     6781 ggcggcgact ggcaggaaga taatggcatc tggcaccaga acgtgttcgc ttattatctc
     6841 tccatctcct gtaaccattg cgatgacccc gcatgtacaa aagtctaccc cagcggcgca
     6901 atgcataagc gtgaagatgg ctttgtggtg gttgatgaag atgtttgtat cggctgccgc
     6961 tactgccaca tggcttgtcc gtacggcgca ccacagtaca atgctgaaaa agggcacatg
     7021 acgaagtgcg atggttgtta ttcgcgcgtc gccgagggga aacaacccat atgcatcgaa
     7081 tcctgcccgc tgcgtgcact tgagttcggt ccaattgaag agctgcgcca gaagcacggc
     7141 actctggctg ccgtcgcgcc actgccgcgc gcgcatttca caaaacccaa tatcgttatc
     7201 aaacctaacg ccaacagccg cccgacc
//
LOCUS       DAJVUP010000189         7204 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.189, whole genome shotgun sequence.
ACCESSION   DAJVUP010000189 DAJVUP010000000
VERSION     DAJVUP010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7204
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.189"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(236..790)
                     /locus_tag="OQQ75_003748"
                     /pseudo
     CDS             complement(236..790)
                     /locus_tag="OQQ75_003748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS3H family transposase"
     gene            933..1055
                     /locus_tag="OQQ75_003749"
                     /pseudo
     CDS             933..1055
                     /locus_tag="OQQ75_003749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1317..1883)
                     /gene="ipgB2"
                     /locus_tag="OQQ75_003750"
     CDS             complement(1317..1883)
                     /gene="ipgB2"
                     /locus_tag="OQQ75_003750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB2"
                     /protein_id="HCS1977922.1"
                     /translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
                     TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
                     EKDYHISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
                     FEKNVQYIDLKKLRGNMSDYITNLESPF"
     gene            complement(2165..2479)
                     /locus_tag="OQQ75_003751"
     CDS             complement(2165..2479)
                     /locus_tag="OQQ75_003751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977923.1"
                     /translation="MLQRQRGKVGFAQLPVDFVAIEPDSAQGVGKRANLTNRCFIIRI
                     NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
                     RP"
     gene            complement(2557..2667)
                     /locus_tag="OQQ75_003752"
                     /pseudo
     CDS             complement(2557..2667)
                     /locus_tag="OQQ75_003752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2991..3668)
                     /gene="ospD1"
                     /locus_tag="OQQ75_003753"
     CDS             complement(2991..3668)
                     /gene="ospD1"
                     /locus_tag="OQQ75_003753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector/anti-activator
                     OspD1"
                     /protein_id="HCS1977924.1"
                     /translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKRNIINVTNTAIS
                     HAINEEKSGGGYSGVSFRKLAKIQSISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
                     SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
                     LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
                     DKIQELF"
     gene            complement(4039..4176)
                     /locus_tag="OQQ75_003754"
                     /pseudo
     CDS             complement(4039..4176)
                     /locus_tag="OQQ75_003754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011787828.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(4258..4556)
                     /locus_tag="OQQ75_003755"
                     /pseudo
     CDS             complement(4258..4556)
                     /locus_tag="OQQ75_003755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343747.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(5145..5304)
                     /locus_tag="OQQ75_003756"
                     /pseudo
     CDS             complement(5145..5304)
                     /locus_tag="OQQ75_003756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(5308..6462)
                     /locus_tag="OQQ75_003757"
                     /pseudo
     CDS             complement(5308..6462)
                     /locus_tag="OQQ75_003757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6482..6829)
                     /gene="tnpB"
                     /locus_tag="OQQ75_003758"
     CDS             complement(6482..6829)
                     /gene="tnpB"
                     /locus_tag="OQQ75_003758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1977925.1"
                     /translation="MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLF
                     IFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
                     KHPKRTERAGIRI"
     gene            complement(6829..>7204)
                     /locus_tag="OQQ75_003759"
     CDS             complement(6829..>7204)
                     /locus_tag="OQQ75_003759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1977926.1"
                     /translation="RRPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQ
                     YRKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLR
                     LKGKLTPALLQILIREIKGSSH"
BASE COUNT         1859 a         1677 c         1557 g         2111 t
ORIGIN      
        1 aaaaccttct catgtttaga gttttttatt atgtttatca taatgatatg acgatctgag
       61 tttttaaaat caagaagaaa agataagttt tttaaatgca cagtgcctgt ggataacttt
      121 gcgtaaatcc ggaggacaga tcactctgaa gcaagacaac agcatctgaa aacaatatgc
      181 tcacgtttca accacagggc gtaagtgatc ctacccacgt aatatggaca caggcctaag
      241 cgaggttctg gttttcaaat tgttccggac tgaggccgcc acaccaactg tgccgtcgcc
      301 agcgattgta atcacattcg atataattaa acactgttgc ccgcattatt tcccggctga
      361 taaagtgttc tccgtggaga cattccactt tcagcgaatg aaagaagctt tccacgcagg
      421 cattatcgta gcagcagccc tttgcgctca tactgccacg cagattatgc cacttcagca
      481 gcgcctgata atctgctgaa cagtactgac ttcctcggtc cgagtgaacg ataacgttcc
      541 ggggtctctt acgccgccac agcgccatct gcagggcatc gcaggccagt tgcgccgtca
      601 ggcgtggtga catggaccag ccaataacgg cacgtgacca caggtcaatg accacagcca
      661 gatacagcca gccttcatct gtacgtaagt acgtgatgtc tcccgcccac ttctggttcg
      721 gaccactggc gtaaaaatcc tgctccagca gattttctga cacaggcagg ccatgtgcgc
      781 ggtaactgac cgtattgctg ggtaagatca atttgctcac tggtatttac tacgtgcatc
      841 gaatgagtga tcaagagccg tatgacgcga gagtgtcacg tacggttccg tgagcagccg
      901 gagagtgaaa ctctctccgg ctgactcgac tcgcaggttc cgacagcggt gacgaacatg
      961 cagcggtgtt gttctcgctg atcggcacat gccgtctgaa caatgtggag ccagaaaaat
     1021 ggctgcgtta cgttattgaa catatccagg actgaccggc aaaccgggta cgcgatctgt
     1081 tgccttggaa agttgatctg acttctcagt aaatatcaat atgattctga cgagccgctt
     1141 acctttgagc agagaaaggg gagagggatc ccacatccat gagctaggaa aatacaaaaa
     1201 ctggctatac aacaattcaa tatattagga cttacttgcg aggagaaata tagcaccgct
     1261 caggcaattc ctgggtattt acttttctta gtttctttac tcgggatgtt ctgtcatcag
     1321 aaaggcgatt ctaaatttgt aatataatca ctcatattcc cacgtaattt ctttagatca
     1381 atatattgca catttttctc aaaaaactga tcggaaataa gatttgcaac attgcttgtt
     1441 gtatcatttt taacgcttct attcatccct tcacaaagtt cgtccatttt ctttttgaaa
     1501 taactgcttc ctgatacaag atgatttatg gaactttgtg cagcattgat gtctagagaa
     1561 atgtgataat ctttctcaac ctgtttaaat atctgtttac ggagattatc gccgattttt
     1621 cggctgtgtt ctgcacaaaa cttatcaata cattggttta ccacccggga tacgtagact
     1681 tttttttcat catttttcca atctgtaata ttttcaccga tttgttctga aacagagctc
     1741 aaaatactag tatttatttt ggttgatgat atttttacta tccttttccc cattgtacag
     1801 cggataatct catcaacctt tcctgaaaaa tatcttttgt gagataaact gattccaaaa
     1861 ttattaaaag atgttccaag cattataatc actttgtcat gtaaaatagt aacattgtca
     1921 ttattttagc tgattcaaac aattctgtaa atgctttgag ttctttactc ccttggctca
     1981 atgatggacc gtctggaatc ccagagacta aactctctga gaaagagagt atgaaaaaac
     2041 ttggggcagt ccctaaatga agggaccaac agcggtaaaa taaccggcat cattcataat
     2101 gatgccctgt tagttgtagt tatgaagatt tacgtcatta aaattgctgt tcgtagtgtc
     2161 agtcctatgg tctggcatca gctgaggatc gtagccgata catcactggc ttcacgacat
     2221 tcgtgttgag gctattcatg aaaactccac gctgaaaacg cctttttgta taaacggtca
     2281 cggtatgccc ggagccactg ttgctgatga attcgataaa accttggcgt ttcttgaagc
     2341 tatcgttaat gcggataatg aaacaacgat tggtgagatt cgctcttttg ccgacaccct
     2401 gggcgctgtc cggttcaatc gcaacaaaat caaccggcag ctgagcaaac ccaaccttgc
     2461 ctctctggcg ctggagcatg aagtgattta gctgggacgt agccactgac agcttctata
     2521 aaagtatgat cctacccacg taatatgaac acaggcttaa gtgaggttct ggttttcaaa
     2581 ttgttcagga ctgagacctc cacaccaact gtgccgtcgt cagcgattgt aatcgcactt
     2641 gatataatta aacactgtat atttcatttg tggagtctcc agtctgaggg ggctttatgc
     2701 attccgtatt gggcactatg atgccagaaa tctgcaaggc tccacacctt cctgtatttc
     2761 ccttcctcta tcacagtgca ctttacttaa tagggtggga tgtgttcatt acatttattg
     2821 tgttttttat gattgttttt gcgtccagtg tcgttcgtca tgggaaactg gttctatggg
     2881 tagtatcgct cagtctagtt aactgtttgt ttctttttag aaattaagca gatcacacaa
     2941 ttcggggaga gctccttcta agtgcaattc tttgcagcta tttagcacac ttaaaacaac
     3001 tcttgtattt tgtcagaaat aatattaaac atgtcttgtt cattattgtt aagtctgtct
     3061 gctatttctg taagttttat cccactatga tggcatatat ttatatatgc catcatagcc
     3121 tcgatattcc ctttccctgc ggccagaaat aatcctggta acccctcatt atctcttaca
     3181 tccaatagtt taatcgtttc ttttggtgat aaatcaaaag ttttaataaa atctccataa
     3241 gcttgaatcg cagcggaatg accttcttga agagctatga acaaagcaga ttccccagca
     3301 ttatttcgtg ctgcaagaac ttctagtttt tcctctttgg gtatttcggc tgccaacagc
     3361 gattcaccgt atttacgcgc tgcatcagca tttccatgcc aaatcaatga aaacaaatta
     3421 tggcggttat actccttatt attctttgtc ggaatggata tgctctgtat tttggccaat
     3481 tttctgaaag aaacaccact atatcccccc cctgattttt cttcattgat ggcgtgggat
     3541 atagcggtat ttgtcacgtt aatgatatta cgtttcattc ctttattttc attagcagta
     3601 ttgctgccta ttattaggtg catatttttg ttgtttgctg gatgtaatcc atagttattt
     3661 attgacattt ttgttcatcc tttttgctaa aaaaaacaat aacctatttt tgtaatgtaa
     3721 tagatattag tctattgcta atctaaaaaa accattgcca cattgaatgg ctatattcac
     3781 caataaattc tttcgatttc gtatattgac atatcgtaga tatatcttat ccctaagatt
     3841 caataatcga gtccgtttac cattctgtgc aagcgccttc actcagaagt gaccgtcaag
     3901 gcgatcacca aacttgataa taaagcagct cattgccata cgccagtcct taaggggcgt
     3961 tgtccatttc tgtgatgctg cctagattta actgcctgct ccggcttatc tacatctaaa
     4021 tatgtgagcc taataccgct acactttggc cagactatgt ttttctccgg gaagtgggct
     4081 aaccgtctcc ataaagtgac gaactttttt caacagtggc catattgaac ggcactgatg
     4141 attacgggtt attgtctcat gaagagccgg ccacatcact gacagcagtg acttcaggcc
     4201 ttcagcacca gacagcctga accagttaat ccatcgcccg acagatttag taatctaggg
     4261 ctggtttttc ttcagctgtt gcggttcgaa agtgccatta cgatcacgca gagtacggat
     4321 ttccagaggt tcatctccag tagtgataat cttcgttaag caaccattgc gggaattgct
     4381 gccagatcta agctgatttt tctcgcaccc aagatgatga gtcatattag cattgagtac
     4441 ggtttcattt tcagcatcca atcaaactga ctgagatctt caggattttt gagacttttg
     4501 gctagttcat tagctaaagc ccgcaactta ttagatgtca actgtttttc attcataaat
     4561 tcaccttcat ttgatatcaa attaaatagt tcaacatcag agaattatac aaacttatgt
     4621 acaggctcct atgatcttcg aatcctgaag attatagtga aaataagttt tcacgttgaa
     4681 atcccacata gttagtatat gataaataat catggatgac ctgattaacc tcttggggta
     4741 gtgcttttat agaagaataa atattctact aatttaatac atcacctaaa atagtattgt
     4801 tttttatggt tggttgaagg tcgtggtgat gatgttagtc cttttgagaa tattccagtg
     4861 ccagatctta cttataataa aggggcttgg cagtttggat aaactattgt tcttattcca
     4921 ctaatacaaa ctttttgtaa agtatattaa atatacttca tttcatactg aaatccccgg
     4981 aagtattcaa tcaaacaatt acaccataaa aggaagaggg ggccctaatt aagttgtcaa
     5041 gcatgtttat gatacctgca gggtataaat tttctggctg caagcagaca catataaaac
     5101 gtctttattg atcctaccca cataatatgg acacagtcgt aagtgaggct ctggttttca
     5161 aattgttccg gactgagacc accacaccaa cggtgccgtc gccagcgatt gtaatcgcac
     5221 tcgatataac taaacactgt tgcccgcact atttcccgat ggataatagt gttctccgtg
     5281 gagacattcc attttcagcg aatgaatttt catctgttgc tgtatccagt catacagtga
     5341 ctgcatcagt ggcgcggctc tggcttttct tgccgccaga cgctgttctg ctgaacatcc
     5401 ccggacttct gcctcgatgg catacagttc accgatacgc agcagggctt ccgttattct
     5461 gccggattcg tacaacgccc ggtaaccacc gtaagcatcg gcctgaagca ctccgctgta
     5521 accggccaga tgattctgtg gatggatacc tttccggtcc ggtgagtacg cgaaccagac
     5581 cgccggaggc atttccgaac cggcgttacg gtcatcacgg acatagaccc acagccgggc
     5641 agttcttgtt ttaccactgc ccggctcctg gaccggaacg gggatatcat ccgcatgaac
     5701 tttaccgggc atcagcacat actggcgcag gacgtcatac agcggctcca gcagttcagc
     5761 aacggcaccg gtccagcgac ccagtgtggc acggctcagc tccacgccct gacgacgtta
     5821 tatttctgac tggcggtata acggcagata gcctgcatat tttccagcga caacatgggc
     5881 cagaagcccc gctccggcat aactgcgtgc aatgggtttt gaaggcaccg gtgcctgcac
     5941 gatatggtca caccggcaac aggccagttt cggacgttgt gtttcgataa ccttaaaggc
     6001 gctgctgata agctccagct gctctgacac atcacatccc agagaactga gttcgccacc
     6061 acaggccggg cagcattcct cttccggacg gatgacccgg gtttcacggg gaagtgaggc
     6121 aggtaacggt ttacgggctg aagactggcg caggggagat ggcagtaccg ggtcatattg
     6181 ctcacccagc gtttccgcca tttcttcctg aagtgcgctg attcgctcct gtgcttccag
     6241 tatctgccgt tcggtttttg cgcgaagttt ttctgagctt taaccgaact gcatgcgctg
     6301 cagtttcgca accagcgcct tcagccggtt gatttcggaa gcataagccg ccacccgctg
     6361 tgagagcagg cggttgtatt tcgccatctg gcggatggtg tcctgttgcg tctgcaacag
     6421 tgcccgcagg cgggcattct catgagcaag tgaggtgtcc atatcctcac tttacaacgg
     6481 gttatatgcg gatgccagcg cgttccgttc gtttcgggtg tttccagtcg atgccctcaa
     6541 gaagcatgga taactgggcc ggagtaaggt gcaccttgcc gtcacgggtg accggccaga
     6601 cgaagcggcc ccgctccagg cgtctggtaa agaggcacag tccgtcactg tcagcccaca
     6661 acacttttat ctggtcaccc cggcgtccgc ggaagatgaa cagatgcccg gagaacgggt
     6721 catccttcag gacgttctga acttttgagg ccaggccgtt aaagccattt cgcatatcgg
     6781 tgatacctgc aaccagccag atacgcgaac ctgcagggaa agatatcatc agtggctgct
     6841 cccttttatt tcgcggataa gtatctgtaa taacgccggc gtcagtttac ctttaagcct
     6901 gagagttccg gccggcagaa ccagctcaca gcacagactg tcggacggtg tatttatctg
     6961 ctctggttcc tgtgccggag ccgggatttt attatccggc tccggcgtta acgtcacggg
     7021 aagcagtgca ggcatatttt ttccggaagg cagcaggcca cctttccggt attgatggcg
     7081 ccagttgaag agcaggttat cgttgattcc gttttcacgg gcgatctgcg ccacacaggc
     7141 tccgggctgc agtgactgct ccactaaggc gattttaaat tcataaggaa aattaggccg
     7201 ccgg
//
LOCUS       DAJVUP010000190         7131 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.190, whole genome shotgun sequence.
ACCESSION   DAJVUP010000190 DAJVUP010000000
VERSION     DAJVUP010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7131
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.190"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            122..187
                     /gene="yobI"
                     /locus_tag="OQQ75_003760"
     CDS             122..187
                     /gene="yobI"
                     /locus_tag="OQQ75_003760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response small protein YobI"
                     /protein_id="HCS1977927.1"
                     /translation="MYIFITHFFTEYVIFKYLLPI"
     gene            326..937
                     /gene="ruvA"
                     /locus_tag="OQQ75_003761"
     CDS             326..937
                     /gene="ruvA"
                     /locus_tag="OQQ75_003761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HCS1977928.1"
                     /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE
                     AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV
                     EREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
                     QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL"
     gene            946..1956
                     /gene="ruvB"
                     /locus_tag="OQQ75_003762"
     CDS             946..1956
                     /gene="ruvB"
                     /locus_tag="OQQ75_003762"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HCS1977929.1"
                     /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF
                     IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT
                     NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
                     TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARG
                     TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF
                     FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE
                     MP"
     gene            complement(2006..2791)
                     /gene="znuB"
                     /locus_tag="OQQ75_003763"
     CDS             complement(2006..2791)
                     /gene="znuB"
                     /locus_tag="OQQ75_003763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HCS1977930.1"
                     /translation="MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL
                     GVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKHPQLALDTLLGIMAHSALSLGLVVVS
                     LMSNIRVDLMAYLFGDLLAVTPEDLIAIAIGVVIVVAILFWQWRNLLSMTISPDLAFV
                     DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV
                     LVGMVAVTGGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS"
     gene            complement(2788..3543)
                     /gene="znuC"
                     /locus_tag="OQQ75_003764"
     CDS             complement(2788..3543)
                     /gene="znuC"
                     /locus_tag="OQQ75_003764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HCS1977931.1"
                     /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS
                     TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL
                     PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY
                     DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG
                     PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS"
     gene            3622..4554
                     /gene="znuA"
                     /locus_tag="OQQ75_003765"
     CDS             3622..4554
                     /gene="znuA"
                     /locus_tag="OQQ75_003765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HCS1977932.1"
                     /translation="MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIAD
                     GVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLLGAKQV
                     TIAQLEDVKLLLMKSIHGDDDDHDHAEKSEEDHHHGDFNMHLWLSPEIARATAVAIHG
                     KLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFG
                     LTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG
                     TLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD"
     gene            4570..5892
                     /gene="mepM"
                     /locus_tag="OQQ75_003766"
     CDS             4570..5892
                     /gene="mepM"
                     /locus_tag="OQQ75_003766"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HCS1977933.1"
                     /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD
                     ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST
                     GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
                     TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ
                     WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN
                     GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE
                     VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP
                     HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD"
     gene            6012..6983
                     /gene="lpxM"
                     /locus_tag="OQQ75_003767"
                     /gene_synonym="msbB"
     CDS             6012..6983
                     /gene="lpxM"
                     /locus_tag="OQQ75_003767"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416369.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS1977934.1"
                     /translation="METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMVGIALTPPKFR
                     DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE
                     LAIRGPEKIQPRVDWQGLQIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM
                     FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE
                     FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT
                     IARRMNEEVEIFVGPRPEQYTWILKLLKTRRPGEIQPYKRKDLYPIK"
BASE COUNT         1880 a         1723 c         1827 g         1701 t
ORIGIN      
        1 tgtaaagacg atatctccaa tttcatattc agcagggtaa ttaatattca cgttgtcatt
       61 ccattgaaat agatacgaat atacgtaata gcataaaaaa attatttttt caggaggtgc
      121 aatgtatatt tttattacgc atttcttcac tgaatacgta atatttaaat atttgcttcc
      181 aatataacct gtagaataaa tcatactgcg ccatttttca gttcatcgag acacctcgca
      241 agttttcttc atccttcgct ggatatctat ccagcatttt tttatcatac agcattatct
      301 ttgattcatt acgcaggagc gtcatgtgat aggcagactc agaggcatca tcattgaaaa
      361 acaacccccg ctggtgttaa ttgaagtggg cggcgtaggc tatgaagtgc atatgccgat
      421 gacctgtttt tatgaactcc ctgaagcggg tcaggaagcg atcgttttca cccactttgt
      481 ggtgcgtgaa gacgcgcaac tgctgtacgg ttttaacaat aaacaagagc gcacattgtt
      541 caaagagttg atcaaaacca acggcgtcgg cccgaagttg gcgctggcga tcctctccgg
      601 aatgtcagcg cagcagttcg ttaatgccgt tgaacgtgaa gaagtggggg cactggtgaa
      661 actgccgggt attggcaaaa aaaccgccga acgcttgatt gttgaaatga aagaccgatt
      721 taaaggtttg catggcgatc tgtttacccc tgccgccgac ctggtactca catcacctgc
      781 cagcccggcg accgacgatg ctgaacagga agcggttgcc gcgctggtgg cgctgggcta
      841 taaaccacaa gaagcaagcc gcatggtgag caaaatcgct cgccctgacg ccagcagtga
      901 aacattaatt cgcgaagccc tacgcgccgc gttatgaggt aaaggatgat tgaagcagac
      961 cgtctgattt ctgccggtac cactttgccg gaagatgtag cagatcgcgc cattcgccct
     1021 aaattactgg aagagtatgt tggtcagccg caggttcgtt cacagatgga gattttcatc
     1081 aaagcagcga aactgcgcgg cgatgccctc gatcatttgt tgatttttgg tcctccgggg
     1141 ttgggtaaaa ctacgcttgc caacattgtc gccaatgaaa tgggcgttaa tttacgcacg
     1201 acttctggtc cggtgctgga aaaggcgggc gatctggcag cgatgctcac taaccttgaa
     1261 ccgcatgacg tgctgtttat tgatgagatc caccgtttat cgccagttgt tgaagaagtg
     1321 ctgtacccgg caatggaaga ctaccaactg gatatcatga ttggtgaagg tccggcggca
     1381 cgctccatta aaattgattt gccgccgttt accctgattg gcgcaaccac gcgcgcaggt
     1441 tcgctgacat caccgttgcg cgaccgtttt ggtattgtgc aacgtctgga gttttatcag
     1501 gtgccggatc tgcaatatat cgttagtcgc agtgcacgct ttatggggct tgagatgagt
     1561 gatgacggcg cgctggaagt tgctcgtcgc gctcgcggta cgccacgtat tgccaaccgt
     1621 ctgctgcgtc gagtgcgtga tttcgccgaa gtgaagcacg atggcaccat ctcggcagat
     1681 atcgctgctc aggcgctgga catgttgaat gtcgatgctg aaggtttcga ttatatggac
     1741 cgcaaattgt tgctggcggt aatcgataag ttctttggtg ggccggtagg tctggataac
     1801 ctggcggcgg ctattggcga agaacgtgaa accattgagg atgtgctgga accttatttg
     1861 attcagcaag gctttttgca gcgtacaccg cgtgggcgta tggcgacgac gcgggcgtgg
     1921 aatcactttg gcataacgcc gccagaaatg ccgtaagtcg gattggtcgc tcgcgacgca
     1981 tccgacaaat gtgttcagcg atagattagc tggcctgctt tttcatcata ctgataataa
     2041 ataacagtgc tgcacatagc accaccgacg gacccgccgg cgtatcgtaa aatgcggaaa
     2101 aggttaaacc gcccgttacg gcaaccatcc ccaccaacac agcgacacct gccatctgtt
     2161 ccggcgtgcg ggcaaagcga cgtgcagtag cagcaggaat aatcagcagt gaagtaataa
     2221 tcaacgcgcc aacaaatttc atcgctacac caatcgtcaa tgccgtcacc agcatcaaca
     2281 acaatttcac gcgctgtaat ttcacaccat caacaaacgc cagatccggg ctaatcgtca
     2341 tcgacagcaa attgcgccat tgccagaaca aaatagccac cacgatgacc acgccaatcg
     2401 caatagcgat gagatcttct ggcgtcactg ccagcaaatc accgaacagg taagccatca
     2461 aatcaacacg aatgttagac atcagactaa cgaccaccag gcccagcgac agggcactgt
     2521 gcgccataat ccctaataac gtgtcaagcg ccagctgtgg atgtttctcc agccatacca
     2581 gaccgcccgc caggagcagc gtaacggcaa ttaccgcata gaatggattc acgtccagca
     2641 acaaaccaaa cgcgacgcca agtaatgagg catgagccag cgtatcaccg aaataagaca
     2701 tacgacgcca gactacaaac gaacccagcg gacccgcggc acaggcgagc atgatcccgg
     2761 ctaaccaacc gggaaataat aattcaatca tgagcgatca tttccccgac gcaaaacaat
     2821 tcgtccctgt aaatcgtgac gatgattatg atgatggcga tagataccca gttgttcagc
     2881 accacgagga ccaaacatag aaataaactc cggatgtagg gaaacaactt ccggtgtgcc
     2941 ggaacaacaa atgtggtgat tcagacacag cacttcatcg gtttttgcca ttaccagatg
     3001 cagatcgtga gagaccatta aaacgccaca atccagttcg cgacgcaact ggtcaataag
     3061 gtcatataac gccacctggc catttacatc cacgccttga gtgggttcat ccagcactaa
     3121 taattgcggt cgatttaaca atgctcgcgc taacagtaca cgctgtgttt cgccaccaga
     3181 gagcttttgc atcggtgcgt taatcagatg cccggcctgg acacgtttca gtgcaggcaa
     3241 aatatcttct ttatgtgtgc cagggcgtaa gcgtaaaaaa cggtttacgg tcagtggcaa
     3301 cgtggtgtcg agatacagct tctgcggtac atagccgatg cgtagttttc cgttgcgctt
     3361 gataacccct tcatcgggtg ttaccagccc gagcactacc cgtaccagtg tcgacttacc
     3421 tgcgccattt ggcccaagta aagtcaaaat ttttccaggt ttaagttcca gcgacacatc
     3481 agagaggacg cggcgttggc caaaagaaac tgagacattt tccagggaaa ccagacttgt
     3541 catgttaatt ttagtcttgc agtagtcatg agatgttata atatcacact tctcatattc
     3601 attacgatga ttggtcgcat tatgttacat aaaaaaacgc ttcttttcgc agcattatcc
     3661 gccgctctct ggggaggtgc aacacaggcc gcagatgccg ccgttgtcgc ttcgcttaaa
     3721 cccgttgggt tcatcgcttc tgccattgct gatggtgtaa cagaaacgga ggttttactg
     3781 cctgacggcg cttcagaaca tgattattca ctgcgtccat cggatgtaaa acgcttacag
     3841 aacgcggact tagtcgtttg ggttggcccg gagatggaag cgtttatgca aaaaccggta
     3901 agcaaattac taggagcgaa gcaggtaacg attgcgcagc ttgaagatgt gaaactgcta
     3961 ctgatgaaaa gtattcacgg cgatgatgat gatcacgacc acgcggaaaa aagtgaagaa
     4021 gatcaccatc acggcgattt caacatgcat ctttggcttt ccccagagat agcgcgggct
     4081 acagcggttg caatccatgg aaaattagtg gaacttatgc cgcaaagtcg agccaaactt
     4141 gacgccaacc tgaaggattt tgaggcacaa ttagcctcaa ccgaaacgca ggttggtaac
     4201 gagctcgcgc cgctcaaggg gaaaggttat ttcgtttttc acgatgctta cggctatttc
     4261 gaaaaacagt tcggactgac accgcttggt cattttaccg ttaaccctga gattcaacct
     4321 ggcgcgcagc gtttacatga aataagaaca cagttggttg agcaaaaagc aacctgcgtt
     4381 tttgctgagc cacagttcag gccagcggtc gttgagagcg tcgcacgagg gacatccgtt
     4441 cgtatgggaa cgttggatcc cttggggacg aatatcaaac tgggtaaaac aagctattca
     4501 gaattcctga gtcaattagc caaccagtat gcgagctgcc tgaaaggaga ttaatgagga
     4561 agtgattacg tgcaacagat agcccgctct gtcgccctgg cgtttaataa tttaccgcga
     4621 ccacaccgcg ttatgttggg gtcgctcacc gttcttactc tggccgtcgc tgtctggcgg
     4681 ccctatgttt atcaccgcga tgccacgcca attgtcaaaa ccattgagct ggaacagaac
     4741 gaaattcgtt cgctcttacc tgaagccagt gagccgattg atcaagctgc acaagaagat
     4801 gaagccattc cccaggacga actggatgac aaaatcgccg gtgaagcggg cgtgcatgaa
     4861 tatgttgttt ccactggcga tacgctaagc agcattctca atcagtatgg tattgatatg
     4921 ggtgatatca cccaactggc tgcggccgac aaagaattgc gtaacctgaa aatcggtcaa
     4981 caactctcct ggacattaac cgcggacggc gaactgcagc gcctcacctg ggaagtgtct
     5041 cgtcgtgaaa cccgaaccta tgaccgtact gccgctaacg gttttaaaat gaccagcgaa
     5101 atgcagcaag gagagtgggt taacaatctg ctgaaaggta ccgtcggagg gagctttgtt
     5161 gccagcgcca gaaacgccgg tttaaccagc gccgaagtga gcgcagtgat taaagccatg
     5221 cagtggcaaa tggatttccg caaactgaaa aaaggcgatg aatttgcggt gttaatgtct
     5281 cgagagatgc ttgatggtaa acgtgagcaa agccagctgc tgggcgtacg tttgcgttca
     5341 gaaggtaaag attattacgc aatccgcgct gaggatggca aattctacga ccgtaacggt
     5401 actggtctgg cgaaaggatt cttgcgattc ccgacggcga aacagttccg tatctcgtct
     5461 aactttaacc cgcgtcgtac taatccggtg accggtcgcg ttgcaccaca cagaggtgtt
     5521 gatttcgcca tgccgcaggg tacgccagtg ctttcagtgg gtgacggtga agtggtggtt
     5581 gccaaacgca gtggcgcagc aggttattat gtggctattc gtcatggtcg cagctacacc
     5641 acgcgttata tgcacttgcg caagattctg gtgaaaccgg gacagaaggt gaaacgtggc
     5701 gaccgtatcg cgctttccgg taataccgga cgttcaaccg ggccgcatct gcactatgaa
     5761 gtatggataa accagcaggc cgtaaacccg ctgacggcaa aactgccgcg taccgaaggg
     5821 ctgaccggct ccgatcgtcg cgaattcctg gcgcaggcca aagagattgt gccgcagcta
     5881 cggtttgatt aattaacatc cattcgcagc cggtacgcag tcagtaccgg ctttttttat
     5941 ttggtgcggg gcaagttgcg ccgctacact atcaccagat tgatttttgc cttatccgaa
     6001 actggaaaag catggaaacg aaaaaaaata atagcgaata cattcctgag tttgataaat
     6061 cctttcgcca cccgcgctac tggggagcat ggctgggcgt agcagcgatg gtgggtatcg
     6121 ctttaacgcc gccaaagttc cgtgatccca ttctggcacg gctgggacgt tttgccggac
     6181 gactgggaaa aagctcacgc cgtcgtgcgt taatcaatct gtcgctctgc tttccagaac
     6241 gtagtgaagc tgaacgcgaa gcgattgttg atgagatgtt tgccaccgcg ccgcaagcga
     6301 tggcaatgat ggctgagttg gcaatacgcg gaccggagaa aattcagccg cgcgttgact
     6361 ggcaagggct gcagatcatc gaagagatga ggcgtaataa cgagaaagtt atctttctgg
     6421 tgccgcacgg ttgggccgtc gatattcctg ccatgctgat ggcctcgcaa gggcagaaaa
     6481 tggcagcgat gttccataat cagggcaacc cggtttttga ttatgtctgg aacacggtgc
     6541 gtcgtcgctt tggcggtcgt ctgcatgcga gaaatgacgg tattaaacca ttcatccagt
     6601 cggtacgtca ggggtactgg ggatattatt tacccgatca ggatcatggc ccagagcaca
     6661 gcgaatttgt ggatttcttt gccacctata aagcgacgtt gcccgcgatt ggtcgtttga
     6721 tgaaagtgtg ccgtgcgcgc gttgtaccgc tgtttccgat ttatgatggc aagacgcatc
     6781 gtctgacgat tcaggtgcgc ccaccgatgg atgatctgtt agaggcggat gatcatacga
     6841 ttgcgcggcg gatgaatgaa gaagtcgaga tttttgttgg tccgcgacca gaacaataca
     6901 cctggatact aaaattgctg aaaactcgca gaccgggcga aatccaaccg tataagcgta
     6961 aagatcttta tcctatcaaa taaaaaaaag cctctcaaat tattgagagg ctgtactcga
     7021 taaaaaatct caatgagtgt tcccactatt ttgagttttt aggttagtac gctattgagt
     7081 taatcgtagc gtgataattt caaaaggttt gaactcaaga ttgcaatatt g
//
LOCUS       DAJVUP010000191         7123 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.191, whole genome shotgun sequence.
ACCESSION   DAJVUP010000191 DAJVUP010000000
VERSION     DAJVUP010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7123
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.191"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..650
                     /locus_tag="OQQ75_003768"
     CDS             <1..650
                     /locus_tag="OQQ75_003768"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709490.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HCS1977935.1"
                     /translation="TYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV
                     QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGH
                     AAFVDAGKLLPNIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE
                     LLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV"
     gene            741..1988
                     /gene="tnaB"
                     /locus_tag="OQQ75_003769"
     CDS             741..1988
                     /gene="tnaB"
                     /locus_tag="OQQ75_003769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity tryptophan permease TnaB"
                     /protein_id="HCS1977936.1"
                     /translation="MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAF
                     ILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTY
                     AYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI
                     ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC
                     YGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLG
                     TKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPP
                     ALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIV
                     ILFGITVILCWFGNVFNVLPKFG"
     gene            2120..3295
                     /gene="mdtL"
                     /locus_tag="OQQ75_003770"
     CDS             2120..3295
                     /gene="mdtL"
                     /locus_tag="OQQ75_003770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtL"
                     /protein_id="HCS1977937.1"
                     /translation="MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF
                     SVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQG
                     LGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF
                     WAMAMMGIAVLMLSLFILKETRPASPAASDKPRENSESLLNRFFLSRVVITTLSVSVI
                     LTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQV
                     LFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIA
                     QVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA"
     gene            3270..4229
                     /gene="yidZ"
                     /locus_tag="OQQ75_003771"
     CDS             3270..4229
                     /gene="yidZ"
                     /locus_tag="OQQ75_003771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator YidZ"
                     /protein_id="HCS1977938.1"
                     /translation="MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA
                     KLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELA
                     AESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
                     ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWAL
                     DNVLQELGRERTIAMSLPEFEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPL
                     PFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA"
     gene            4386..5135
                     /locus_tag="OQQ75_003772"
     CDS             4386..5135
                     /locus_tag="OQQ75_003772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709485.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HCS1977939.1"
                     /translation="MATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRG
                     LLAELMFMLYGIGELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLD
                     MELQRATRGFHSPHAPDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLN
                     DDPRDLQLLPIAGRLKCAHVNHVEALCDAEDVLVWSVAVTPAIEKLSVWELDGKHSWK
                     SLPDIHSRANNPTSRMMRFAQLSTVKSFSPN"
     gene            5157..5723
                     /gene="yieF"
                     /locus_tag="OQQ75_003773"
                     /gene_synonym="chrR"
     CDS             5157..5723
                     /gene="yieF"
                     /locus_tag="OQQ75_003773"
                     /gene_synonym="chrR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I chromate reductase YieF"
                     /protein_id="HCS1977940.1"
                     /translation="MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA
                     DIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLP
                     DQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDRQT
                     GEVIDQGTLDHLTGQLTAFGEFIQRVKI"
     gene            complement(5777..7114)
                     /gene="adeP"
                     /locus_tag="OQQ75_003774"
     CDS             complement(5777..7114)
                     /gene="adeP"
                     /locus_tag="OQQ75_003774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeP"
                     /protein_id="HCS1977941.1"
                     /translation="MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVY
                     IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVV
                     VQAMGLPWQIGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG
                     LKNAGVIVANSETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLG
                     WMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT
                     DKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAV
                     VVGLLFLLVIFLSPLAGMVPGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV
                     MMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCVIIVALLFILKIVFIDAH"
BASE COUNT         1694 a         1822 c         1803 g         1804 t
ORIGIN      
        1 aaacctacaa atatgccgat atgctggcga tgtccgccaa gaaagatgcg atggtgccga
       61 tgggcggctt gctgtgcatg aaagacgaca gcttctttga tgtgtacacc gagtgcagaa
      121 ccctttgcgt ggtgcaggaa ggcttcccga catatggcgg cctggaaggc ggcgcgatgg
      181 agcgtctggc ggtaggtctg tatgacggca tgaatctcga ctggctggct tatcgtatcg
      241 cgcaggtaca gtatctggtc gatggtctgg aagagattgg cgttgtctgc cagcaggcgg
      301 gcggtcacgc ggcattcgtt gatgccggta aactgctgcc gaatatcccg gcagaccagt
      361 tcccggcaca ggcgctggcg tgcgagctgt ataaagtcgc cggtatccgt gcggtagaaa
      421 ttggctcttt cctgttaggc cgcgatccga aaaccggtaa acaactgcca tgcccggctg
      481 aactgctgcg tttaaccatt ccgcgcgcaa catatactca aacacatatg gacttcatta
      541 ttgaagcctt taaacatgtg aaagagaacg cggcgaatat taaaggatta acctttacct
      601 acgaaccaaa agtattgcgt cacttcaccg caaaactgaa agaagtttaa ttaatactac
      661 agagtggcta taaggatgtt agccactctc ttaccctaca tcctcaataa caaaaatagc
      721 cttcctctaa aggtggcatc atgactgatc aagctgaaaa aaagcactct gcattttggg
      781 gtgttatggt tatagcaggt acagtaattg gtggaggtat gtttgcttta cctgttgatc
      841 ttgccggtgc ctggtttttc tggggtgcct ttatccttat cattgcctgg ttttcaatgc
      901 ttcattccgg gttattgtta ttagaagcaa atttaaatta tcctgtcggc tccagtttta
      961 acaccatcac caaagattta atcggtaaca cctggaacat tatcagcggt attaccgttg
     1021 ccttcgttct ctatatcctc acttatgcct atatctctgc taatggtgcg atcattagtg
     1081 aaacgatatc aatgaatttg ggctatcacg ctaatccacg tattgtcggg atctgcacag
     1141 ccattttcgt tgccagcgta ttgtggataa gttcgttagc cgccagtcgc attacctcat
     1201 tgttcctcgg gctgaagatt atctcctttg tgatcgtgtt tggttctttc ttcttccagg
     1261 tcgattactc catcctgcgc gatgccacca gcaccactgc gggaacgtct tacttcccgt
     1321 atatctttat ggctttgccg gtgtgtctgg cgtcatttgg tttccacggc aatattccca
     1381 gcctgattat ttgctatgga aaacgcaaag ataagttaat caaaagcgtg gtatttggtt
     1441 cgctgctggc gctggtgatt tatctcttct ggctctattg cacgatgggg aatattccgc
     1501 gcgaaagctt taaggcgata atctcctcag gcggcaacgt tgattcgctg gtgaaatcgt
     1561 tcctcggcac caaacagcac ggcattatcg agttttgcct gctggtgttc tctaacttag
     1621 ctgttgccag ttcgttcttt ggtgtcacgc tggggttgtt cgattatctg gcggacctgt
     1681 ttaagattga taactcccac ggcgggcgtt tcaaaaccgt gctgttaacc ttcctgccac
     1741 ctgcgttgtt gtatctgatc ttcccgaacg gctttattta cgggatcggc ggtgccgggc
     1801 tgtgcgccac catctgggcg gtcattattc ccgcagtgct tgcaatcaaa gctcgcaaga
     1861 agtttcccaa tcagatgttc acggtctggg gcggcaatct tattccggcg attgtcattc
     1921 tctttggtat aaccgtgatt ttgtgctggt tcggcaacgt ctttaacgtg ttacctaaat
     1981 ttggctaaat ccttcaagaa gccagccatt cgctggcttc ttgcctctca ggaaatcact
     2041 tatgtccaaa tggcaactcg cctgatcctc cttcaccacg tatgctttgc gtcaccttac
     2101 tatcaggacg ctttagccca tgtcccgctt tttgatttgt agttttgccc tggttttact
     2161 ttatcccgcc gggattgata tgtacctcgt tggtttaccg cgcatcgccg ccgatctcaa
     2221 tgccagcgaa gcgcagttgc atattgcgtt ctccgtatat ctggcgggga tggcagctgc
     2281 gatgttattt gccggtaaag tggccgatcg ttcagggaga aagccggtcg ccatacccgg
     2341 cgcggcgcta tttattattg cctcggtgtt ctgttcactg gctgaaacca gcacgttatt
     2401 tcttgcaggc cgatttctac aggggttggg cgcaggctgt tgttacgtag tggcgttcgc
     2461 cattttgcgc gacacgctgg atgatcgacg tcgggctaaa gtgctgtcat tactcaacgg
     2521 tattacctgc atcattccgg tgttagcgcc agtgctcgga catctgatta tgcttaaatt
     2581 cccgtggcag agtctgttct gggcgatggc aatgatgggc atcgcggtac tgatgttgtc
     2641 tttgtttatt ttaaaagaaa cgcgcccagc gtcccccgct gcttcggaca aaccacgaga
     2701 aaatagcgag tcgctgctta atcggttttt cctcagccgt gttgttatca ccaccctcag
     2761 cgtttcggtg atcctcactt tcgtcaatac atcgccggta ttgctgatgg aaatcatggg
     2821 ttttgagcgc ggagaatacg ccaccattat ggcgttgacc gctggcgtca gcatgaccgt
     2881 ttcattctcc acgccatttg cgctgggaat ttttaagcca cgtacgttga tgatcacctc
     2941 gcaggtgtta ttccttgcag cggggatcac ccttgccgtt tcaccttccc atgcggtttc
     3001 tctgtttggt atcacactga tttgcgccgg tttctcggta ggttttggcg tagcgatgag
     3061 tcaggcgtta ggaccatttt cattacgcgc gggcgtagcc agctcgacct taggtattgc
     3121 gcaggtttgc ggttcgtcac tgtggatttg gctggcagcg gtggttggta tcggcgcatg
     3181 gaatatgctg atcgggattc tgattgcctg tagcatagtg agcctgttgc tgattatgtt
     3241 cgtcgcgcct ggacgccccg ttgccgctca tgaagaaatc catcaccacg cttgatctca
     3301 atctgctgct ctgtctgcaa ctgctgatgc aggagcgcag cgtgaccaaa gcggcgaagc
     3361 ggatgaacgt gaccccttca gcggtgagta agtcgctggc aaagttaaga gcgtggtttg
     3421 acgacccgct ctttgtgaac tcaccgctgg ggctgtcgcc cacaccgcta atggtcagca
     3481 tggagcaaaa tctggcggaa tggatgcaaa tgagcaatct gctgctggat aaaccgcacc
     3541 accagacacc gcgcggcctg aagtttgagt tggcggcgga atcgccgctg atgatgatca
     3601 tgcttaatgc gctgtcgaaa cggatctacc aacgttaccc gcaggcgacc atcaaactac
     3661 gtaactggga ttacgattcc ttagatgcca ttactcgtgg tgaagtggat attggttttt
     3721 ccggtcgcga aagccatcct cgctcgcggg agctgttaag ctcgctaccg ttagccattg
     3781 attatgaagt gctgtttagt gatgtaccct gcgtctggtt acgcaaagat catccggcac
     3841 tgcatgaaac gtggaatctg gacacctttt tacgttatcc gcatatcagc atttgctggg
     3901 aacagagcga cacctgggcg ctggacaatg tgttacagga gctggggcgc gaacgcacga
     3961 ttgctatgag cctgccggaa tttgagcagt cactgtttat ggcagcgcaa cccgacaatc
     4021 tgctactggc gaccgcgccg cgctactgtc agtactacaa tcaactccat caactgccgt
     4081 tggttgctct tcctctcccg tttgacgaaa gccagcaaaa aaagctggaa gttcctttta
     4141 ccctgctgtg gcataaacgg aacagtcata atccgaagat cgtctggtta cgggaaacca
     4201 ttaaaaacct ttacgcgtcg atggcataac cgaatcgtat gaaacgcgac ccaatttcac
     4261 aataaaatgt aaaaaagttg taataagctt gtctgaatcg aacttttagc cgctttagtc
     4321 tgtccatcat tccagtaaat gattactctt atattcataa tggaccatta agcatggagc
     4381 gaaaaatggc gactcacttt gcccgaggga ttttaacgga aggacatctg atttctgttc
     4441 gtctcccctc ccagtgtcat caagaagccc gaaacattcc ccctcatcgt caaagccgtt
     4501 ttctggcgtc cagaggttta ctcgcagaac tgatgttcat gctgtatggc attggcgaat
     4561 tgccggaaat cgtcaccctg ccgaaaggta aaccggtttt cagtgataaa aatttgcctt
     4621 cgttttctat ttcctatgcc gggaatatgg ttggcgtggc gttaacaacc gaaggtgaat
     4681 gtggcctcga tatggaacta cagcgtgcga cgcgcgggtt tcatagccca cacgcgcccg
     4741 ataaccacac cttttccagc aatgaatcgc tatggatcag taaacaaaac gatcctaacg
     4801 aagcgcgggc gcagctcatc acgctgcgcc gaagcgtgct aaaactaacc ggtgatgttt
     4861 tgaatgacga tccgcgcgat ctgcagctgc tgcccattgc cggacgcctg aaatgtgctc
     4921 atgtaaatca tgtagaagcg ttatgcgacg cggaggacgt gctggtgtgg tccgtggcgg
     4981 tcacgcccgc gattgaaaag ctcagtgtct gggagttaga tggcaaacac agctggaaaa
     5041 gcctgccgga tattcacagc cgcgccaaca atcctaccag ccggatgatg cgttttgccc
     5101 agctctctac cgtgaagtct ttttcgccaa attgatagac aaccacagga gtcattatgt
     5161 ctgaaaaatt gcaggtggtt acgttactgg ggagcctgcg caaaggctca tttaatggca
     5221 tggttgcacg taccctgccg aaaattgctc cggcgagcat ggaagtcaat gcgttacctt
     5281 ccattgccga cattcccctg tatgacgctg acgtacagca ggaagaaggt tttccagcaa
     5341 cggttgaagc tctggcggaa cagatccgtc aggctgacgg tgtggtgatc gtcacgccgg
     5401 aatataacta ctcggtaccg ggtgggctga aaaatgccat cgactggctt tcccgcctgc
     5461 cggatcaacc gctggccggt aaaccggtgt tgattcagac cagctcaatg ggcgtgattg
     5521 gcggcgcgcg ctgtcagtat cacctgcgcc agattctggt tttcctcgat gcaatggtga
     5581 tgaacaagcc ggaatttatg ggcggcgtga ttcagaacaa agttgatcgg caaaccggag
     5641 aagtgattga tcagggtacg ctggaccacc tgaccgggca attgaccgca tttggtgagt
     5701 ttattcagcg agttaagatc taaataaaaa acccgccagt aatcatgcat ggcgggtttt
     5761 taatgcgcta tcgattttaa tgagcgtcga taaatacaat cttcaggata aacagcagcg
     5821 caacgatgat tacgcacggg ctaaggtcac gcagacgccc ggtaccaatc ttcatcacgc
     5881 agtaggagat aaagcccagc gcaatacctt cggtaatcga aaagctgaac ggcatcatca
     5941 cggcggtaat aaacgccgga acagattcag taagatcctg ccagttcacg cgagcaagac
     6001 ttgaggtcat caacacgcca acgtagatca acgcgccagc tgcagcgtag cctggcacca
     6061 ttcccgccag cggcgacaga aagataacca gcaggaacag cagaccaaca accactgccg
     6121 tcagaccggt acgaccgcca accgatacgc cggaagagga ctcaatataa gccgtaacgg
     6181 aagaagtacc gataaacgaa ccggtcacgg aagagatact gtcgacatac agcgcttgct
     6241 tcatgcgcgg gaatttcccc ttctcatccg ccagacctgc tttatcggtc acgccaatca
     6301 gcgtaccgga ggagtcaaac aagttgacca acatgaaaga gaaaatcacc cctgccagcc
     6361 cgaggttaaa cgacccggct aaatctacat gacccacaac tgtcattacg ctcggcggcg
     6421 cagaaacgat gccattgtag tgcacatcac ccagcatcca gcccagcagc gtcgtcacca
     6481 cgatagaaac cagcaccgct gcgtgaatgt tgcgcgaggc cagaatagca atgatgaaga
     6541 agccgaggat acccagaagt acgctgtgag aagtcagatt accgatgctc accagcgttt
     6601 ccgagttagc gacaatcaca cctgcgtttt tcagccccat catgccgata aacaggccga
     6661 taccgctggt aatacccaca cgcagactta ccggaatgtt agcaatcatc cagtaacgaa
     6721 cgcggaaaat ggtcaaaaga agcagtccga cagcgcccca gaagattgcg cccataccga
     6781 tctgccacgg cagccccatt gcctggacaa ccacaaaagc gaaaaaggcg ttaagcccca
     6841 tcgcaggagc cagcgccacc ggaaggtttg caaacaatcc catcataatg ctaccgaaag
     6901 cagcaatcag acaggttgtt acgaagacgg cactggtgtc catgccagca acgcccagaa
     6961 tttgtgggtt aacaaaaacg atgtaaacca tcgtcaggaa ggtggtaaaa ccggcgatca
     7021 cttcggtccg tgccgtcgtg ccatgttcgc gcagtttaaa cacgcgttcc agcatcccct
     7081 ggccagaagc ctgggttgtg tgttgttgac tcattatcta ttt
//
LOCUS       DAJVUP010000192         7118 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.192, whole genome shotgun sequence.
ACCESSION   DAJVUP010000192 DAJVUP010000000
VERSION     DAJVUP010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7118
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.192"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(826..1356)
                     /locus_tag="OQQ75_003775"
                     /pseudo
     CDS             complement(826..1356)
                     /locus_tag="OQQ75_003775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416483.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
     gene            complement(1699..2349)
                     /gene="zinT"
                     /locus_tag="OQQ75_003776"
     CDS             complement(1699..2349)
                     /gene="zinT"
                     /locus_tag="OQQ75_003776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein ZinT"
                     /protein_id="HCS1977942.1"
                     /translation="MAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV
                     FDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYA
                     TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK
                     YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH"
     gene            complement(2606..3241)
                     /gene="msrQ"
                     /locus_tag="OQQ75_003777"
     CDS             complement(2606..3241)
                     /gene="msrQ"
                     /locus_tag="OQQ75_003777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HCS1977943.1"
                     /translation="MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQ
                     HFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV
                     NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL
                     APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV"
     gene            complement(3242..4246)
                     /gene="msrP"
                     /locus_tag="OQQ75_003778"
     CDS             complement(3242..4246)
                     /gene="msrP"
                     /locus_tag="OQQ75_003778"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HCS1977944.1"
                     /translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISAAALSLPHAAHA
                     DLLSWFKGNDRPPAPAGKPLEFSKPAAWQNNLPLTPVDKVSGYNNFYEFGLDKADPAA
                     NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP
                     LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT
                     LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG
                     FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYADQVASLYRGLDLRENF
                     "
     gene            complement(4355..4711)
                     /gene="hiuH"
                     /locus_tag="OQQ75_003779"
     CDS             complement(4355..4711)
                     /gene="hiuH"
                     /locus_tag="OQQ75_003779"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS1977945.1"
                     /translation="MVYAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTA
                     KTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHYH
                     VPLLLSQYGYSTYRGS"
     gene            4882..5553
                     /gene="hprR"
                     /locus_tag="OQQ75_003780"
     CDS             4882..5553
                     /gene="hprR"
                     /locus_tag="OQQ75_003780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707854.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor HprR"
                     /protein_id="HCS1977946.1"
                     /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
                     YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF
                     SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
                     SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF
                     VAVKK"
     gene            5553..6911
                     /gene="hprS"
                     /locus_tag="OQQ75_003781"
     CDS             5553..6911
                     /gene="hprS"
                     /locus_tag="OQQ75_003781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     HprS"
                     /protein_id="HCS1977947.1"
                     /translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT
                     LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKIVNRTNVSDDMLN
                     NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN
                     SIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPL
                     GQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA
                     GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF
                     KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNGYLNIDIASLGTK
                     IHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSASYHYLNKHNVFRITLPQ
                     RN"
     gene            complement(7019..>7118)
                     /locus_tag="OQQ75_003782"
     CDS             complement(7019..>7118)
                     /locus_tag="OQQ75_003782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310732.1"
                     /note="Hsp31 stabilizes early unfolding protein
                     intermediates under severe heat stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="protein deglycase HchA"
                     /protein_id="HCS1977948.1"
                     /translation="HKDRKLLTGDSPFAANALGKLAAQEMLAAYAG"
BASE COUNT         2007 a         1464 c         1608 g         2039 t
ORIGIN      
        1 gctgagaaaa aagcgtgctt tcccaatctg gggcaaatca cgtctgaatg acacctgaaa
       61 acaggtggtg gactcaagaa ggcttggaat attcttcttt aatgttatgt aattcattga
      121 tttttcgtgt acgattttaa gacatttttt ccaagaaaaa tttttaactc tttgattttt
      181 cgactctgta tcatcggtct cgaaaaccgg agtaggggca actctaccgg gggggcaaat
      241 ccccctctct ccgccacttt atcaatgact tatctcccga cttcccgcct tacttttcct
      301 aaacagaaca atcgtagaat attcttgaag ggttagatcg tcactgtttt ctgttcgata
      361 ctgtgacatt cagcacttga ttcgctatgg atctgacagg aagctttcga gcgaaaatgt
      421 gcagttattc agtcgttttc ttatcgctca ccattattct tttagacatt catcctatga
      481 aactgccgca aagttggtgg tgggaactga agttgcgtag agaaggggtc aataattgag
      541 tcaaaaaagg aacgcggccg tcagattaaa gccgcgggac aaagtccata atttccaaga
      601 gttgttgaat ttcccagctt ttttgaaagc ctttgtatca tactaacaag taaaaaaggt
      661 ttaaatacca aaattaacct gtatttttga taagtcttac cattgtacga tttacacagt
      721 ttctgctcct ccttgttgat agtggaaagg gtgcattgtg cacttgcgta aacatttatg
      781 acgcgttgat gtccatggtt cacatttcct tgtcagggga tcgacttatt tgcggcgagg
      841 catcattcgt aacagagtat tatctttctg aatgtagtga tgaaagagtg ctgcgccagc
      901 gtgagctgcg attaaaaagt aacctatatt tgcccaggtt tcgtgaatat tttatatcag
      961 tgctttaatt tcgctgtttg gggtaacaaa gggagacaca ttgaaaccaa ggaaactcca
     1021 cgattttcca ctgtaagcca tcaaagcaat ccccagcaga ggaagtgcaa ggaaggttat
     1081 ataaagcatg atgtgcatta gcgaagccgc tttcatttgc caggcaggtg gcggtggcac
     1141 aatagaagga tcactataac ggtgttttat aatcaggcgt gaaaacatta acacccaaac
     1201 gaatataccc gcattgtaat gtgtttctcg catcagcaga taagtactac tacctttagg
     1261 aaaccagcca cggagttcca tcgcggcata ggttattgca acgaaaagca gcgttatcca
     1321 atgtaaataa atttgagttt ttgagaatcg gttcattttt gtagctcctg taatttttac
     1381 agtcaagcta tcccacgaac cttaaaaatt ccttatacag atgtgatttt aagaatttgt
     1441 tatttaaaaa attgatagtg cacattgtaa ccagccaata taagcaatgg cgtgagcaca
     1501 ggtatctttc tctgttggcc gtattgtgta tggaatccgt tattggttaa ctcaatgcgg
     1561 gttagcttat taatatacag acacgtcata gtgatgagcg tgtctgtagc tagcttgcgt
     1621 tcagtggcgt ttgtggatgg accagtggca gttatgatga cttactaaag cggcatcgag
     1681 gcgttatcat gagaatactc aatgagacat catttcctcg accacttctt cgctactcaa
     1741 ctgatatgga taatacgttg gccagttttc catttcattt aataaagatt gctgtgaatc
     1801 attacccata aaaatgtgaa aatgagatga ttttcgtggt gcaattatat gatcgctaaa
     1861 ttgtatatat ttaggggctt tgctttcagg atctttacat tcgaataagt aacgaacgcc
     1921 tttcttgcct gatttatagg tgagtatttt gtatccatcg taatcatatt tacaggatgt
     1981 tgtttcatta tttctatgga attcaacaat gccgtcctca atgccaatca tctcgatatc
     2041 tgttgcataa cctttgtgat aataatcttt aatttcagca aatgttttag ttttatctgc
     2101 atccgctttc ttctgaaaga cggggtcaag tttgccactt tgcagtaaag gataaacgga
     2161 ttgccagacc ccatcccagt cactgagcgt tcggttttgt acattggcat catcaaaaac
     2221 accattagca gctttttgtt cgacctctgt taagggtttg ccgtgtgagt gatgaccatg
     2281 cgaaaaggca ggagcgctaa caataaagac acctaacgca acagccagtt tgtgaagacg
     2341 aatcgccaaa acagtttcct ccagagtcat tgtatatgat gtgtaatgtt atattgtaac
     2401 atatggcaaa atgcaacaac tcttaggaga tgagagcata gttttctcag gtgtacttat
     2461 ctatcttatt gaaataaaat gaattatatt gataatttga ggttgatgac aaacgaaaca
     2521 taatctgatg tgatctgcgt aggccggata gggcgctcgc gccgcatccg gcagggataa
     2581 cgcgtacttt gtcggcaata tgaagttata cagataattt gttgtgaacc tgcttgcgta
     2641 accggttaaa aagggaacgc aacttcttat accgtaaggc taaaagcagt acagccagcc
     2701 cagcgtagat gagcggctgc ggtgaaataa tcttcactga ccacagataa tgtattgggg
     2761 ccaggatcgc gacaagatag acgaaattat gcaactgttg ccagtgcttg ccgagttttc
     2821 gctgcatcgc ctgggttgaa gtaaacgcta aagcaagcaa aataacccag ctgataattc
     2881 ctaacgttaa ataaggccgg gtaattaact ccttgcctaa taacgccaga ttattcacgc
     2941 ccagctccag caatgcgtaa ctggttaaat gcagtgtcgc ccaggcaaag caccataagc
     3001 ctaacaggcg gcgagtgcgt atcaataacg gctgttttgc gtagcgtgcc agaggtgtga
     3061 ttaacaaggt cgccagcaaa aatttcagtg cagtgcgacc ggtaaaatgc tgaatatctt
     3121 tcaccggatc ggcacccagt ccaccgtgat tgatcgccca gaccagccag agaaacggca
     3181 acaatccggc aagatgcagg ctaactttca gccatgtcac ctgttttgct gtcagacgca
     3241 ttcagaaatt ctcccgcaaa tccaggccac gatacagcga tgccacctgg tcggcgtaac
     3301 cattaaacag tagcgttggc tggcgctgaa catcgaggat gccgcctgaa ccaataaatc
     3361 gttcggtagc ctgtgaccag cgcgggtgat caacatgcgg attaacgttg gcgtaaaaac
     3421 cgtattcgtc aggcgctgcc agattccagg tggttggcgg acgctcgcgg gtcagcttaa
     3481 tactgactat cgatttaatc cctttaaagc catatttcca cggcacaatc agtcgtaccg
     3541 gcgcgccatt ttgtggcggt aacgccttgc cataaacacc cacggtcatc agtgtgagcg
     3601 gatgcattgc ttcgtcgaga cgcaatcctt cgacataagg atatttcagc ccgccgccga
     3661 taaagcggtc ctgctggcct ggcatttgtt ccggtgcata aattgtttcg aaagcgacat
     3721 acttcgcatt gctggtgggt tcggcaagcg ccagcaattt gtgcagcgga aaaccaatcc
     3781 acggcaccac catcgaccat gcctccacgc agcgcatacg ataaatacgc tcttccagcg
     3841 ggaagcgacg ggttaaatca tcgtgatcga gggtcaatgg ttttgccact tcgccgctga
     3901 ttttcagtgt ccatggatcg gttttcaggc taccagcatt agcggcggga tcggctttat
     3961 ccagcccgaa ttcatagaag ttgttataac cggagacttt atctactggc gtcagtggca
     4021 ggttattttg ccaggcggca ggcttgctga actccagcgg ttttccggcg ggggcgggcg
     4081 ggcgatcgtt ccctttaaac cagctaagca gatcggcatg cgcagcgtga ggcaaagaaa
     4141 gtgcagctgc actgatgccc agtgctttta acacctgccg acgcttcata aagaataccg
     4201 actcggccgt aacatctgat tcttttaaaa attgattctt tttcataagc catcacactt
     4261 ttttgtcgtt agccagcaag agccgtttac tgttaatctg tcagggagtg tcctccctaa
     4321 cagtagcaga gatctgcttt tacatattta tgcattaact gccacgatag gttgaatacc
     4381 catattggct aagtaataaa ggcacatgat aatgctcgtt cactttatta atatgaaatt
     4441 caacggggat ctcagggaag aaactttcaa gattttgttt cttgaaatag tccccggttt
     4501 taaatacgac acggtaatcg cccgtagttg cagtttgctc gggccacagt gctttaattc
     4561 gtccatcctt atctgttttg gcggtattaa gttgtaacca gccgttatcc gccttctttt
     4621 caagagtgac tgtcacgtca gcagcgggtt ttccggtttg ctggttcaaa atgtgcacgc
     4681 taagaatgtt ttgttgtgcg gcataaacca aagaaggtaa tgaaaatgct gcaaataacg
     4741 ctttaacatg tttatatcct tgtcatgtga atgagttttg aggatagcga aaaagcggcc
     4801 agggtaacct tacagcagca ttacaatttt gtaatgaacc aggctgtttc tataacatat
     4861 gatttatggc atattatttt catgaagatt ttacttattg aagataatca aaggacccag
     4921 gagtgggtaa cgcaggggct ttccgaagcg ggttatgtca ttgatgccgt ttctgatggc
     4981 agagatgggc tttatcttgc gctgaaggat gattatgcat tgataattct ggatattatg
     5041 cttccgggta tggatggctg gcagatctta caaacgttaa gaacagcaaa gcaaacccct
     5101 gttatttgcc ttactgcaag ggattctgtc gatgacagag tcagagggct ggacagtgga
     5161 gcaaatgatt atctggtaaa acctttttca ttttctgagt tgctggcaag ggttcgggca
     5221 caattaaggc aacatcacgc tttgaattca acattagaaa tcagtggctt aagaatggac
     5281 tctgtaagtc aaagtgtgag cagggacaat atcagtatta cactgacgcg caaggagttt
     5341 cagttacttt ggctactggc ctccagagct ggcgaaatta tacccagaac ggttattgcg
     5401 agtgaaattt ggggaatcaa ctttgatagt gataccaata cggtggatgt cgccattcgc
     5461 aggctccgcg caaaagttga tgatcctttt cctgaaaagc taatcgccac aatccggggg
     5521 atgggctatt cattcgtagc ggtaaaaaaa taatgaaaag attgtctata accgtccgtt
     5581 taaccttgct ttttatattg ctgctgtctg ttgctggcgc tggaattgtc tggactctct
     5641 ataatggcct ggcaagtgag ttgaaatggc gcgatgatac aacactcatt aaccggacag
     5701 cacagatcaa gcagttgtta attgatgggg taaatccaga tacgttacct gtatacttta
     5761 accggatgat ggatgttagt caggatatct tgatcattca tggtgatggc atcaataaaa
     5821 ttgttaaccg gacaaatgtc agtgatgaca tgttaaataa catacctgct agtgagacaa
     5881 tcagcgcagc tggcatttac agaagcatta ttaatgatac tgagattgat gctttacgaa
     5941 ttaatattga tgaagtttcg ccatcattaa cggttactgt ggctaaattg gcttcagcta
     6001 gacataacat gcttgaacag tataaaatta atagcattat aatttgcatt gtcgccattg
     6061 tactttgctc agtattaagt ccgctgttaa tcagaacggg attacgagag atcaaaaagt
     6121 tgagtggtgt aacggaagcg ctgaattata acgatagccg agagcctgtt gaggttagcg
     6181 cattaccgag agaactaaaa cctcttgggc aggcgttgaa taaaatgcat caagccttag
     6241 tcaaagattt tgaacgccta agtcaatttg ctgacgatct cgctcatgaa cttagaacgc
     6301 ccattaatgc attactgggt cagaatcagg ttacgctcag tcaaaccaga agtatcgctg
     6361 aatatcaaaa aacaattgcc ggtaacattg aagagttgga aaatatttcg cggttaacag
     6421 agaacatact gtttcttgcc cgggcagata aaaacaatgt tttggtgaaa ctggactcgc
     6481 tttctctcaa taaggaagtc gaaaatttgt tggattatct tgaatatctt tcagacgaga
     6541 aagagatttg ctttaaggtc gagtgcaatc agcaaatctt tgcggataaa attttactgc
     6601 aacgaatgtt atcgaatctt attgttaatg ccattagata ttcaccagaa aaatcgcgta
     6661 ttcatataac cagttttctt gataccaacg gctatcttaa tattgatatc gccagtcttg
     6721 gaacgaaaat acatgagcct gaaaaactct tccgtagatt ttggcgggga gataattcgc
     6781 gtcattccgt aggtcaggga cttggtcttt ctttagtcaa agcgattgcc gaattgcatg
     6841 ggggaagtgc ttcatatcac tatctcaata agcataatgt gttccgaatt acgttaccgc
     6901 aaagaaatta acatagggct tcagtacgcc ataaattaac cgtgaaaaaa cgcagccacg
     6961 tcgtgagtac taacgcggct gcgattaatt atgcgcttac attcaaacgt aacagggatt
     7021 aacccgcgta agctgccagc atttcctgcg ccgccagttt acccaacgca ttcgctgcga
     7081 aaggactgtc gccggtgaga agtttacggt ccttatgt
//
LOCUS       DAJVUP010000193         7021 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.193, whole genome shotgun sequence.
ACCESSION   DAJVUP010000193 DAJVUP010000000
VERSION     DAJVUP010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7021
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.193"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            598..882
                     /locus_tag="OQQ75_003783"
     CDS             598..882
                     /locus_tag="OQQ75_003783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858243.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1977949.1"
                     /translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
                     CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
     gene            870..1355
                     /locus_tag="OQQ75_003784"
     CDS             870..1355
                     /locus_tag="OQQ75_003784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1977950.1"
                     /translation="MGCVTAPEPLSSFHQVAEFVSGEAVLDDWLKQKGLKNQAIGATR
                     TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
                     LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
                     Q"
     gene            1389..2567
                     /gene="ltrA"
                     /locus_tag="OQQ75_003785"
     CDS             1389..2567
                     /gene="ltrA"
                     /locus_tag="OQQ75_003785"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005017045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HCS1977951.1"
                     /translation="MCVATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPV
                     LEKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDAL
                     KQCAIRCWRYSWILEVDISAFFDHVKHDLVLKALEHHGMPKWVILYCRRWMEAPMQSC
                     ENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRM
                     SDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNF
                     KGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNTIVRGWIEYYGKF
                     WSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
                     "
     gene            2650..2804
                     /locus_tag="OQQ75_003786"
                     /pseudo
     CDS             2650..2804
                     /locus_tag="OQQ75_003786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(2858..3340)
                     /locus_tag="OQQ75_003787"
                     /pseudo
     CDS             complement(2858..3340)
                     /locus_tag="OQQ75_003787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016154415.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(3596..4576)
                     /locus_tag="OQQ75_003788"
     CDS             complement(3596..4576)
                     /locus_tag="OQQ75_003788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HCS1977952.1"
                     /translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
                     IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
                     DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
                     GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
                     GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
                     LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
     gene            complement(4576..5775)
                     /locus_tag="OQQ75_003789"
     CDS             complement(4576..5775)
                     /locus_tag="OQQ75_003789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1977953.1"
                     /translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
                     AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
                     DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
                     LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
                     LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
                     AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
                     GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
                     EFIRANY"
     gene            complement(6097..6435)
                     /locus_tag="OQQ75_003790"
                     /pseudo
     CDS             complement(6097..6435)
                     /locus_tag="OQQ75_003790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(6502..>7021)
                     /gene="istB"
                     /locus_tag="OQQ75_003791"
     CDS             complement(6502..>7021)
                     /gene="istB"
                     /locus_tag="OQQ75_003791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS21-like element IS100kyp family helper ATPase
                     IstB"
                     /protein_id="HCS1977954.1"
                     /translation="KQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGI
                     QVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQKEAKLFFQV
                     IAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLGRILHHSHVVQIKGESYRLRQK
                     RKAGVIAEANPE"
BASE COUNT         1883 a         1595 c         1675 g         1868 t
ORIGIN      
        1 cggcatccgg catataggca gcatgaacgc aacacaggct ctcgtacgga acgtgggaac
       61 ctgtcgtctc gatgctaagg gagcggcgcg gagcagaggc actgcaagcg cctgagtacc
      121 gatgcgagac acaggggcag atggcttcgt agtagtgagg aagtgcctgt aatgggcatg
      181 gagcgaaggg ggtcagtcga ggcgtttgag gttaccaatc gaagctatac ccggtaatgg
      241 cgcaggttga cctgcacttg gccaagtgga ttgcccgcaa acacaagcga gcgcgaggta
      301 gtctggtgcg tgcattcgag tggttactgc gaattcgtca cgactgcccg acgctgtttg
      361 cacactggtg cttagcttac gatacttgaa tggttcaacg acaagagccg tatgacgcga
      421 gagtgtcacg tacggttccg tgggagcgta ggggggcggt gcccctgcgc cacccgatat
      481 cccctttgag tgcggttacg tccacagagg taaatgccgc tgacgcggca tctgtaatct
      541 gttactttgt gtacatcatt tgctatatat tgtcaatatg ctattgttgt aaagcaaatg
      601 atatacggag gctttatgaa atcaggtgtt cagctcaatc tcagagcaag agaatcacag
      661 cggatactca ttgatgctgc tgcagaaatt cttcataagt cgcgtacaga tttcattctg
      721 gaaatggcct gtaaagctgc tgaagatgtt attctcgacc ggcgggtgtt taattttaat
      781 gacaggcaat atgaagagtt cattgaaatg cttgatgctc cggttgcaga tgatcctgcc
      841 atcgaaaaat tgctggcaag gaaacctcaa tgggatgtgt aactgcacca gaacctttat
      901 cctcatttca tcaggtcgct gaatttgtca gcggtgaagc tgtacttgat gactggttaa
      961 agcagaaggg gctaaaaaat caggcaatcg gagccacccg gacttttgtt gtatgcagaa
     1021 aaggtacgca acaaatagtc ggtttttact cactggccac tggtagtgtc aatcatacag
     1081 aagctacagg taaccttcgg cgcaatatgc cagaccccat tcctgtaatt atacttgcac
     1141 gcctggctgt agatgtgtca tttcgaggaa aagggcttgg cgcggattta cttcatgatg
     1201 cagttcgtcg ttgttacagg gttgccgaaa atatcggtgt gcgtgcaatt atggttcatg
     1261 cgcttacgga aaacgcaaaa cagttttata ttcatcatgg ttttaagcca tcaaaaactc
     1321 aggtgcaaac attgtttctt aaactccctc aatagggagt aatgcactgg tctgggcatc
     1381 atatctggat gtgcgtcgca acaagggagc cccccggatg cgacgggcag actttgaaaa
     1441 tgttcgacca gcaacgtgat ggcaatctat acaagatctg gaaccggcta tgttcgggaa
     1501 catggtttcc gccaccagtg ctggaaaaac ggatcccgaa gtcgaatggc aaggaacgca
     1561 ttctggggat cccaacagta tccgatcgaa ttgctcaggg agcgataaaa cttttcatgg
     1621 aagaaaagct tgacccgatt ttccatgctg attcatatgg ttaccgacca ggcaaatcag
     1681 ctcatgacgc tctgaaacaa tgtgccatcc ggtgctggcg ttatagctgg atactggaag
     1741 tggacatcag tgcgtttttc gaccatgtga aacatgatct ggtgctcaaa gctctggaac
     1801 accacgggat gcctaaatgg gtcatcctgt actgtcgacg ctggatggaa gcgccaatgc
     1861 agagttgtga aaatggagaa ttaataaccc gaacacgagg cactccgcag ggcggggtca
     1921 ttagtccgct acttgctaac ttgttccttc actatgcatt tgatttgtgg atggaaagag
     1981 aatatcgggg ggtaccgttt gagaggtacg ctgacgatat tgtagtacat tgttcacgaa
     2041 tgagtgatgc aacaaggcta aagaacaggt tatcggagcg cttctcggaa gtcgggctgg
     2101 tcctgaatgc agggaaaacg aatatcgcct acattgacac gtttaaaagg agaaacgtcg
     2161 caacgagttt cacctttctc ggatatgact tcaaagtgcg tacgctgaag aatttcaaag
     2221 gcgaacggta ccgaaaatgc atgccgggtg cgtcaaatgc agcaatgcgc aaaataacag
     2281 aaacaatcaa gaagtggcgt atacatcgct caacagctga gagtttgctg gattttgcga
     2341 ggcgctacaa tacgatagtg agaggctgga tcgagtacta cggaaagttc tggtccagaa
     2401 atttcaacta tcgactgtgg agtgcaatgc agtcacgtct gctcaagtgg atgcagtcta
     2461 aatacagact ttcgaaccgg aaggctcagc gaaagctgac gctggtaagg aaggagtatc
     2521 cgaagctatt tgttcactgg tatttactac gtgcatcaaa tgagtgatca agagccgtat
     2581 gacgcgagag tgtcacgtac ggttccgtga gcagccgggg agtgaaattc tctccggctg
     2641 actcgactcg cgggttccga cagcgatgac gaacatgcgg cggtgttgta ctcgctgatc
     2701 ggcacatgcc gtctgaacaa tgtggaacca gaaaatggct gcgttacgtc attgagcata
     2761 tccaggactg gccggcaaac cgggtacgtg atctgttgcc ctagaaagtt gatctgagct
     2821 ctcagtaaat atcaatacgg ttctgacgag ccgcttactt ttggcgtaat tctgctgcgc
     2881 ctttactgaa cacaatgccg tattcagcaa gaagtccacg aatgtgattt atcagttgtg
     2941 tcctttccat tgaaaccaac cgacgcatat tcaaaaaagt ttggacgtcc tgttgctcca
     3001 gagtttttat tggtacgggt cgtatagttc catgttggca ggcctcagct attgcctgtg
     3061 cgtcgttata atcatttttc tggcaccgct gataagcttt aacatgttgt gccggaagca
     3121 atattacatc atggtcgagt ttcctgattt cccgggccca gtaatgagat gccccgccag
     3181 cctccatcgc aacagtcatt ttaggctgtt gcaccagcca gttaagcagt tgattgcgag
     3241 aaagtttggt ctttcctgcg ggtttgccat gagcattgat actgaaaaga taaaagttcg
     3301 ttttagccag atcaatgccg gtgattttct gttcagacat ggtatcccgc ttacttttgt
     3361 ggttaaagtt tatccatcat ggcgcaattg aaggctgccg tgaaagaggg ggaagactat
     3421 ctcatcggtt actgttaaac ggctaagaga aactatcttt ttcaagcaaa gaagatacgg
     3481 tgaaacaggc gatttcaccg tgaaatactg ttcaaaaaaa acgctaataa aagcaaaatt
     3541 tcttttaaaa cagccaatta aaaactggtg agttgctggc gaaaaacttg aattttcaca
     3601 gcgaattcag attatctttt agtacaagag caatcatacg atctaactta tcctgaactt
     3661 ccaacggtaa tctgccgaat tcatatgaga acgtacgtcc ctttactcgt tttcgagcaa
     3721 atttatcttt actatcaaat ttccataaca aagttacaac cgctttatcc tttactcctg
     3781 aatcaagcaa tgaagacatt tccttggtta taagccgcat aatactgttt ttaacctcgt
     3841 cttcagaaag attgtcatca gcagtaataa gctcaatact cggcgagata ttcttcacaa
     3901 cttcatcaat agatatatca cccagcctca gtcgttcact taattcagcc agttgcctgt
     3961 aatcggcgta tgtcagctca gactgaacag gaaaaagaga cacaaaatct ttaggtacgg
     4021 acgctgcttg gagggcacga gtcaccttag ctgccgacaa tccctctctt tccgcaattt
     4081 gcttctggtt cataccggcc tctttgagac gtactaaacg caacccaatt tcacgaatat
     4141 tatgttcaag tgacgtctgc aaatctttcg ccagatgctg agcttcagaa acagtaagct
     4201 catcatccgt tacaagtaca cgtaatccaa ccttgcatag caaagctgct gcccgacgac
     4261 gggaaccatc caaaatctca ataagatcgc cagtccgaat cccaatacat ggatagaatt
     4321 gttgtaaacg tatagttctg gtgatgtctt ttagtgagtc cggcgtcagg gctgtctgtt
     4381 cgcggccatt cacctcttca accacaaaag tttgagtgtc cactttgtca tgatcaacct
     4441 tgatctcagt aaattttgcc tttcggccag tattgagggt aaatacatga actggagccg
     4501 atatttcttc agtattattc aggatatttg tattcagcgt acggccaata gtcggtcggt
     4561 gctttctgtt ttccatcagt agttggccct tataaattca atacgatcaa aaactgcttt
     4621 agcgaaatct tctgctgcca tacgtgcatt tttcaaagct tcaccactgc caacataagt
     4681 aacaggattc gcagatatca cggtatcaaa cgactcgccg cttctctcaa aaccatcaag
     4741 acgtggcatt gaaacatcaa gcatgtcacc accgaaaatc tcttttgtca ggctatggca
     4801 gtatttatga tctgacttat tcgccagttt cgacatgaag ccaatatttg cctgcaaacg
     4861 gcatgaacat ccatcctgtt caataatctg tacaagttca ggtaaacgag ccaaatattt
     4921 aagcgtggaa tggaaatcaa cttgtgctgg cggcaccggt gtaaacatga tatctgcggc
     4981 agcaatggca tttttcaaaa atgcgtccag atgcgggcct gtatcaataa ggatgaagtc
     5041 gaaatcatgc ttcagcttat caataatatt ctcacgcaat atcgcgtgtt tgttttgtcc
     5101 taatagatgc tcctcgcaca gagtatccca gtttgatgca ataaaggcgt cgtcaataga
     5161 agccggcata acataaacgc cagggataac tgacggaacg ataaaatctt ccagtaattc
     5221 ctcacgactc acgttctgca acatagcctg cggtgcggtt gtatcaacca gccccaccgc
     5281 atgcaagtag ttcagaaaca tagtggctga tgactgggga tctaaatcaa ggagcagaat
     5341 acgtaaatct tctgacagca ggtgaggatg agcacgcagg gcgtgagcta cggaaacact
     5401 actcacggtt ttagacacac cgccttttag actaccgatg aatatggaat atgcctcact
     5461 ataacgatcg cgatatttag gaatgccacg atgtgcatag atatcgataa tgttctggat
     5521 ggttaatgca tattttgtcg cggttcctgc tgggcgtttt tcaaactgat agccctgagc
     5581 ctccatctca ccgactgcac catccacgct tgcgcgcgtt aattttggaa gcttagctac
     5641 agcagacttt gaatagactt gataaaaaac atcagcctga aactcctgct tttgctcctg
     5701 aatctgtttt gttagggcga gcaacatttt atctgcacgc tgcgcaacct tacttaactg
     5761 ctcaaaacta gtcattcccc ctccgtgcta tgtaggattt taacttatta caaaaaaaac
     5821 tgcattagca gggtaatgca tgcaagtgca tattgtacat gcttatatta aaaatgcgcg
     5881 cattgctgat ttattaatca tcggaatgaa tattactgta agatagtatg cctttccggg
     5941 agaaagacgc tgatttcccc cgaataatcc agttcaccac cacactccgg acaacagctt
     6001 tcttcaggct ccagatggtg tatttcgcgg gaaacatgtt ccggtaacgg acggcgatga
     6061 cgtgactgtc gcaacaggcg ggggtagtgc ttccaatcag tagaacatgt gcttttcaat
     6121 gaaggagccg atgacttttt cgtggatttc cacggaacgc gagaagcaga ttgttttacg
     6181 tgccagccgc ttgatgcggg tgcggagggt ccggttgtta cgttcaatac gttgcgtgaa
     6241 gattttgccg gtcaggtgtt tctccttcgg cacttctctg gcgtagctgc cccagtcatc
     6301 gctggtcacc atgccgatac agaacggagt caacagggct aacagttccc gacaggtctc
     6361 atcattccgt ggcccgaaag tgtaagccaa cacaccgcca gttttagtgt tgtacgcata
     6421 ccagagccag tgttgtgtca acgacggatg aaaagtgatc cacttatatc tccaccaacg
     6481 gcccaatatt gatccaccgt tttactcagg attagcttct gctataaccc cggcctttcg
     6541 tttctgtctg agtcgatagc tttctccttt gatttgaacg acatgtgagt ggtgtaagat
     6601 acggcccagc atcgctgagg tcagtgctgc atcaccggcg aacgtttgat cccactgccc
     6661 gaacggtaga ttggatgtca ggatcattgc gctcttttca taacgtttag cgatgacctg
     6721 gaagaacagt tttgcttctt tctgactgaa cggcagatag cctatttcat caatgatgag
     6781 caggcggggg gccattactc cacgctgaag cgtcgtttta taacggccct gacgttgtgc
     6841 cgtagataac tgaagtaaca gatctgctgc tgttgtgaag cgaacttgga tacctgcacg
     6901 gactgcttca tagcccatcg cgattgccag atgggttttc cccacacctg atggccccag
     6961 taatacgata ttttcattac gttctatgaa gctgagtgag cgtaacgact ggagttgctt
     7021 c
//
LOCUS       DAJVUP010000194         7008 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.194, whole genome shotgun sequence.
ACCESSION   DAJVUP010000194 DAJVUP010000000
VERSION     DAJVUP010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7008
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.194"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(68..515)
                     /locus_tag="OQQ75_003792"
                     /pseudo
     CDS             complement(68..515)
                     /locus_tag="OQQ75_003792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312957.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            672..1601
                     /gene="metA"
                     /locus_tag="OQQ75_003793"
     CDS             672..1601
                     /gene="metA"
                     /locus_tag="OQQ75_003793"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HCS1977955.1"
                     /translation="MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM
                     PKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQEQNFDG
                     LIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTR
                     TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD
                     AYLFASKDKRIAFVTGHPEYDAQTLAQEYFRDVEAGLDPEVPYNYFPHNDPQNTPRAS
                     WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD"
     gene            1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ75_003794"
     CDS             1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ75_003794"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HCS1977956.1"
                     /translation="MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQR
                     NKLLAARIQQQQDIDNGTLPDFISETASICDADWKIRGIPADLEDRRVEITGPVERKM
                     VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNP
                     AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQS
                     WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR
                     WDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFI
                     PSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHSGLADTAMAVFNDILGSRKNQLEV
                     MREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAAT
                     AEISRTSIWQWIHHQKMLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFGDAA
                     RLMEQITTSDELIDFLTLPGYCLLA"
     gene            3501..4798
                     /gene="aceA"
                     /locus_tag="OQQ75_003795"
                     /pseudo
     CDS             3501..4798
                     /gene="aceA"
                     /locus_tag="OQQ75_003795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418439.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
     gene            5079..6803
                     /gene="aceK"
                     /locus_tag="OQQ75_003796"
     CDS             5079..6803
                     /gene="aceK"
                     /locus_tag="OQQ75_003796"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HCS1977957.1"
                     /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ
                     LAMKNRIHLYDHHVGLVVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESF
                     FNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDL
                     PLRLRWQNKSRDIHYIIRHLTETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSG
                     TLPFLLPIHQTDDGELFIDTCLTTTAEASIVFGFARSYFMVYAALVEWLREILPGKTT
                     AELYMAIGCQKHAKTESYREYLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVI
                     KDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLEKRHISPALMELLLQE
                     AAEKITDLGEQIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIF
                     PGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELASEPWYSVSPGD
                     VFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQNRIREGHVEDVYAYRRRQRFS
                     VRYGEMLF"
     gene            complement(6772..>7008)
                     /locus_tag="OQQ75_003797"
     CDS             complement(6772..>7008)
                     /locus_tag="OQQ75_003797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977958.1"
                     /translation="LFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILNTLN
                     KMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR"
BASE COUNT         1709 a         1817 c         1800 g         1682 t
ORIGIN      
        1 gtgaaaaaaa tgccgggtgc gacgctggcg cgtcttctcc agcctgggca ggcacggcag
       61 gggcggctta ttcccccaca tacgccagat tcagcaacgg atacggtttc cccaaatcgt
      121 ccacctcaga gcgtcccgta accttaaaac ccaccttctt atagaaccca accgcctgct
      181 cattttgctc attaacgttg gttgtcagtt ccggtgccat cgagagcgca tgctccacca
      241 gcatccgacc cacgccgcag ccgcacacat caggatcgat aaacagcgca tccatatgct
      301 gcccacttaa caacataaac ccaaccggct gatcccgttc attaaccgcg atccacaacg
      361 gcgcttccgg caggaaggaa cgaactagct agcacctcca gctcggcccg atactctgct
      421 gataaaaaat cgtgtgtggc atcgacagat cgacaccaaa tcgcaacgag ttcctcccct
      481 tcctcatgcc gtgagcggcg aatactaata accattttct ctccttttag tcattcttat
      541 attctaacgt agtcttttcc ttgaaacttt ctcaccttca acatgcaggc tcgacattgg
      601 caaattttct ggttatcttc agctatctgg atgtctaaac gtataagtgt atgtagtgag
      661 gtaatcaggt tatgccgatt cgtgtgccgg acgagctacc cgccgtcaat ttcttgcgtg
      721 aagaaaacgt ctttgtgatg acaacttctc gtgcgtctgg tcaggaaatt cgtccactta
      781 aggttctgat ccttaacctg atgccgaaga agattgaaac tgaaaatcag tttctgcgcc
      841 tgctttcaaa ctcacctttg caggtcgata ttcagctgtt gcgcatcgat tcccgtgaat
      901 cgcgcaacac gcccgcagag catctgaaca acttctactg taactttgaa gatattcagg
      961 aacagaactt tgacggtctg attgtaaccg gtgcgccgct gggcctggtg gagtttaatg
     1021 atgtcgctta ctggccgcag atcaaacagg tgctggagtg gtcgaaagat cacgtcacct
     1081 cgacgctgtt tgtctgctgg gcggtacagg ccgcgctcaa tatcctctac ggcattccta
     1141 agcaaactcg caccgacaaa ctctctggcg tttacgagca tcatattctc catcctcatg
     1201 cgcttctgac gcgtggcttt gatgattcat tcctggcacc acattcgcgc tatgctgact
     1261 ttccggcagc gttgattcgt gattacaccg atctggaaat tctggcagag acggaagaag
     1321 gggatgcata tctgtttgcc agcaaagata agcgcattgc ctttgtgacg ggccatcccg
     1381 aatatgatgc gcaaacgctg gcgcaggaat atttccgcga tgtggaagcc ggactagacc
     1441 cggaagtacc gtataactat ttcccgcaca atgatccgca aaatacaccg cgagcgagct
     1501 ggcgtagtca cggtaatttg ctgtttacca actggctcaa ctattacgtc tatcagatca
     1561 cgccatacga tctacggcac atgaatccaa cgctggatta atcttctgtg atagtcgatc
     1621 gttaagcgat tcagcacctt acctcaggca ccttcgggtg ccttttttat ttccgaaacg
     1681 cacctcagga ggtgaataaa ttttattcac attgttatca ataagttatc aagcattttc
     1741 aattaaaatg gaaattgttt ttgattttgc attttaaatg agtagtctta gttgtgctga
     1801 acgaaaagcg cacaacgatc cttcgttcac agtggggaag ttttcggatc catgacgagg
     1861 agctgcacga tgactgaaca ggcaacaaca accgatgaac tggctttcac aaggccgtat
     1921 ggcgagcagg agaagcaaat tcttactgcc gaagcggtag aatttctgac tgagctggtg
     1981 acgcatttta cgccacaacg aaataaactt ctggcagcgc gcattcagca gcagcaagat
     2041 attgataacg gaacgttgcc tgattttatt tcggaaacag cttccatttg cgatgctgat
     2101 tggaaaattc gcgggattcc tgcggactta gaagaccgcc gcgtagagat aactggcccg
     2161 gtagagcgca agatggtgat caacgcgctc aacgccaatg tgaaagtctt tatggccgat
     2221 ttcgaagatt cactggcccc ggactggaac aaagtgatcg acgggcaaat taacctgcgt
     2281 gatgcagtta acggtaccat cagctatacc aatgaagcag gcaaaattta ccagctcaag
     2341 cccaatccag cggttttgat ttgtcgggta cgcggtctgc acttgccgga aaaacatgtc
     2401 acctggcgtg gtgaggcaat ccccggcagc ctgtttgatt ttgcgctcta tttcttccac
     2461 aactatcagg ctctgttggc aaagggcagt ggtccctatt tctatctgcc gaaaacccag
     2521 tcctggcagg aagcggcctg gtggagcgaa gtcttcagct atgcagaaga tcgctttaat
     2581 ctgccgcgcg gcaccatcaa ggcgacgttg ctgattgaaa cgctgcccgc cgtgttccag
     2641 atggatgaaa tccttcacgc gctgcgtgac catattgttg gtctgaactg cggtcgttgg
     2701 gattacatct tcagctatat caaaacgttg aaaaactatc ccgatcgcgt cctgccagac
     2761 agacaggcag tgacgatgga taaaccattc ctgaatgctt actcacgcct gttgattaaa
     2821 acctgccata aacgcggtgc ttttgcgatg ggcggcatgg cggcgtttat tccgagcaaa
     2881 gatgaagagc acaataacca ggtgctcaac aaagtaaaag cggataaatc gctggaagcc
     2941 aataacggtc acgatggcac atggatcgct cactcaggcc ttgcggatac ggcaatggcg
     3001 gtattcaacg acattctcgg ctcccgtaaa aatcagcttg aagtgatgcg cgaacaagac
     3061 gcgccgatta ctgccgatca gctactggca ccttgtgacg gtgaacgcac cgaagaaggt
     3121 atgcgcgcaa atattcgcgt agccgtgcag tacatcgaag cgtggatctc tggcaacggc
     3181 tgtgtgccga tttatggcct gatggaagat gcggcgacgg ctgaaatttc ccgtacctca
     3241 atctggcagt ggatccatca tcaaaaaatg ttgagcaatg gcaaaccggt aactaaagcc
     3301 ttgttccgcc agatgctggg cgaagagatg aaagtcattg ccagcgaact gggcgaagaa
     3361 cgtttctccc aggggcgttt tggcgatgcc gcacgcttga tggaacagat caccacttcc
     3421 gatgagttaa ttgatttcct gaccctgcca ggctactgcc tgttagcgta aaccaccaca
     3481 taactatgga gcatctgcac atgaaaaccc gtacacaaca aattgaagaa ttacagaaag
     3541 agtggactca accgcgttgg gaaggcatta ctcgcccata cagcgcggaa gatgtggtga
     3601 aattacgcga ttcagtcaat cctgaatgca ccctggcgca actgggcgcg gcgagaatgt
     3661 ggcgtctgct gcatggcgag tcgaaaaaag ctacatcaac agcctcggtg cactgactgg
     3721 cggtcaggcg ctgcaacagg cgaaagcggg tattgaagca gtctatctgt cgggatggca
     3781 ggtagcggcg gacgctaacc tggcggccag catgtatccg gatcagtcgc tctatccggc
     3841 aaactcggtg ccagctgtgg tggagcggat caacaatact ttccgccgtg cggatcagat
     3901 ccaatggtcc gcgggcattg agccgggcga tccgcgctat gtcgattact tcctgccgat
     3961 cgttgccgat gcggaagccg gttttggcgg tgtcctgaat gcctttgaac tgatgaaagc
     4021 gatgattgaa gccggtgcag cggcagttca cttcgaagat cagctggcgt cagtgaagaa
     4081 atgcggtcac atgggcggca aagttttagt gccaactcaa gaagctattc agaaactggt
     4141 cgcggcgcgt ctggcagctg acgtgacggg cgttccaacc ctactggttg ctcgtaccga
     4201 tgccgcggat ctgatcacct ccgattgcga cccgtatgac agcgaattta ttaccggcga
     4261 gcgtaccagt gaaggcttct tccgtactca tgcgggcatt gagcaagcga tcagccgtgg
     4321 cctggcgtat gcgccatatg ctgacctggt ctggtgtgaa acctccacgc cggatctgga
     4381 actggcgcgt cgctttgcac aagctatcca cgcgaaatat ccgggcaaac tgctggctta
     4441 taactgctcg ccgtcgttca actggcagaa aaacctcgac gacaaaacta ttgccagctt
     4501 ccagcagcag ctgtcggata tgggctacaa gttccagttc atcaccctgg caggtatcca
     4561 cagcatgtgg ttcaacatgt ttgacctggc aaacgcctat gaccagggcg agggtatgaa
     4621 gcactacgtt gagaaagtgc agcagccgga atttgccgcc gcgaaagatg gctatacctt
     4681 cgtatctcac cagcaggaag tgggtacagg ttacttcgat aaagtgacga ctattattca
     4741 gggcggcacg tcttcagtca ccgcgctgac cggctccact gaagaatcgc agttctaagc
     4801 aacaacaacc gttgctgact gtaggccgga taaggcgttc acgccgcatc cggcaatcgg
     4861 tgcacgatgc ctgatgcgac gcttgcgcgt cttatcatgc ctacagccgt tgccgaacgt
     4921 aggccggata aggcatttac gccgcatccg gcaatcggtg cacgatgcct gatgcgacgc
     4981 ttgcgcgtct tatcatgcct acaaccgttg ccgaacgtag gctggataag gcgtttacgc
     5041 cgcatccggc aattctctgc tcctgatgag ggcgctaaat gccgcgtggc ctggaattac
     5101 tgattgctca aaccattttg caaggcttcg acgctcagta tggtcgattc ctcgaagtga
     5161 cttccggggc gcagcagcgt ttcgaacagg ccgactggca tgctgtccag ctggcgatga
     5221 aaaaccgtat ccatctttac gatcatcacg ttggtctggt cgtggagcaa ctgcgctgca
     5281 ttactaacgg ccaaagtacg gacgcggcat ttttactgcg cgttaaagag cattacacgc
     5341 ggctgttgcc ggattacccg cgcttcgaga ttgcggagag cttttttaac tccgtgtact
     5401 gtcggttatt tgaccaccgc tcgcttactc ccgagcggct ttttatcttt agctctcagc
     5461 cagagcgccg ctttcgtacc attccccgcc cgctggcgaa agactttcac cccgatcacg
     5521 gctgggaatc tctactgatg cgcgttatca gcgacctgcc gctgcgcctg cgctggcaga
     5581 ataaaagccg tgacattcat tacatcattc gccatctgac ggaaacgctg gggacagaca
     5641 acctcgcgga aagtcattta caggtggcga acgaactgtt ttaccgcaat aaagccgcct
     5701 ggctggtggg caaactgatc acgccttccg gcacgttgcc cttcttactg ccgatccacc
     5761 agacggacga cggcgagtta tttattgata cctgcctgac gacgaccgcc gaagcgagca
     5821 ttgtttttgg ctttgcgcgt tcttatttta tggtttatgc agcgctggtc gagtggctac
     5881 gggaaattct gccaggtaaa accactgctg aattgtatat ggctatcggc tgccagaagc
     5941 acgccaaaac cgaaagctac cgcgaatatc tcgtttatct acagggctgt aatgagcagt
     6001 tcattgaagc gccgggtatt cgtggaatgg tgatgttggt gtttacgctg ccgggctttg
     6061 atcgggtatt caaagtcatc aaagacaagt tcgcgccgca gaaagagatg tctgccgctc
     6121 acgttcgtgc ctgctatcaa ctggtgaaag agcacgaccg tgtgggccga atggcggaca
     6181 cccaggagtt tgaaaacttt gtgctggaga agcggcatat ttccccggca ttaatggaat
     6241 tactgctcca ggaagcagcg gaaaaaatca ccgatcttgg tgagcagatt gtaattcgcc
     6301 atctctatat cgagcggcgg atggtgccgc tcaatatctg gctggaacaa gtggaaggtc
     6361 agcagttgcg cgacgccatt gaagaatacg gtaacgctat tcgccagctt gccgctgcta
     6421 acatttttcc tggcgacatg ctgtttaaaa acttcggtgt cacccgtcac gggcgtgtgg
     6481 ttttttatga ttacgatgaa atttgctaca tgacggaagt gaatttccgc gacatcccgc
     6541 cgccgcgcta tccggaagac gaacttgcca gcgaaccgtg gtacagcgtc tcgccgggcg
     6601 atgttttccc ggaagagttt cgccactggc tatgcgccga cccgcgtatt ggtccgctgt
     6661 ttgaagagat gcacgccgac ctgttccgcg ctgattactg gcgcgcacta caaaaccgca
     6721 tacgtgaagg gcatgtggaa gatgtttatg cgtatcggcg caggcaaaga tttagcgtac
     6781 ggtatgggga gatgcttttt tgagtaaagc ttccatataa tttttctccg caatgtatcg
     6841 agggttatcc gtaaagccaa agctttcagc catcttattt aatgtattaa ggattaattc
     6901 agcaataacc cggtgaccaa attcaaaagc caactcaaag gcagagtatt tttgtggcgc
     6961 tttgtgttgc caaaaatcca taatatcttc agcggtaaat ccaaacag
//
LOCUS       DAJVUP010000195         6845 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.195, whole genome shotgun sequence.
ACCESSION   DAJVUP010000195 DAJVUP010000000
VERSION     DAJVUP010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6845
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.195"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..297
                     /locus_tag="OQQ75_003798"
     CDS             <1..297
                     /locus_tag="OQQ75_003798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1977959.1"
                     /translation="LPYLFLALAFPFFKARQDLDRPFVIFKTRMSAMIATVVVVLVVT
                     FANVFTIIPPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRMANKPELALD"
     gene            complement(448..3771)
                     /gene="mscM"
                     /locus_tag="OQQ75_003799"
     CDS             complement(448..3771)
                     /gene="mscM"
                     /locus_tag="OQQ75_003799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="miniconductance mechanosensitive channel MscM"
                     /protein_id="HCS1977960.1"
                     /translation="MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPE
                     VVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMS
                     TDALNQEILQVSSQLLDKSRQAQQEQERTREIADSLNQLPQQQTDARRQLNEIERRLG
                     TLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQL
                     DAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQA
                     QRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQ
                     QLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNS
                     LLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDL
                     RRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVG
                     KVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLL
                     WVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDRE
                     FSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVA
                     ILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAE
                     MLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLW
                     SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE
                     LAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG
                     LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK
                     AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFL
                     VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNG
                     KQTGRTLTSAGKGRQAGSL"
     gene            complement(3793..4761)
                     /gene="psd"
                     /locus_tag="OQQ75_003800"
     CDS             complement(3793..4761)
                     /gene="psd"
                     /locus_tag="OQQ75_003800"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313166.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HCS1977961.1"
                     /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY
                     YKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEED
                     KILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
                     PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT
                     PPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSV
                     TKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV"
     gene            complement(4858..5910)
                     /gene="rsgA"
                     /locus_tag="OQQ75_003801"
     CDS             complement(4858..5910)
                     /gene="rsgA"
                     /locus_tag="OQQ75_003801"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313167.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HCS1977962.1"
                     /translation="MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIV
                     ISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHE
                     RTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLN
                     KIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV
                     GKSSLLNELLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW
                     HLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILE
                     SMAQVKTRKNFSDTDD"
     gene            6005..6550
                     /gene="orn"
                     /locus_tag="OQQ75_003802"
     CDS             6005..6550
                     /gene="orn"
                     /locus_tag="OQQ75_003802"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HCS1977963.1"
                     /translation="MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGP
                     TIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS
                     PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDSFTKQGTHQA
                     MDDIRESVAELAYYREHFIKL"
     gene            6761..6836
                     /locus_tag="OQQ75_003803"
     tRNA            6761..6836
                     /locus_tag="OQQ75_003803"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6794..6796,aa:Gly,seq:gcc)
BASE COUNT         1581 a         1840 c         1837 g         1587 t
ORIGIN      
        1 cttccttacc tgttcctcgc gctggctttc ccattcttta aagcacgtca ggatctcgac
       61 agaccatttg tgattttcaa aacgcgtatg tcggcaatga ttgcgacggt ggttgtcgta
      121 ctggtggtga catttgcgaa cgtcttcacc attattccgc ctgtggttga agccggagac
      181 tgggacagca cattgtggat gattggcggc cctgtcttct tctcgctgtt agcgatggcg
      241 atttaccaga actattgcag tcgcatggcg aataaacctg agttagctct cgactgatca
      301 tatgaaatcc tgcaactcat cgtctctccg gcgatgagtt gtcaggaagt aatgcgtatg
      361 gatgatactc tccagggccg gtgataactg aagatgatgt taagctgcta aatgagccac
      421 gttgacatca tttggcagct tcatgcatta caaacttccc gcctgacgac ctttgcccgc
      481 agacgtcagc gttctccccg tttgtttacc gttgaggctt tccagacgca tctggaaggg
      541 cgggaatggc atatcgatac cgtgggcatg gaagccagcc agaatcagct ggtggatctc
      601 atggcgtagc ggcatacggt gacccatctc agcggcataa atacgcagct cgaaaatctg
      661 aatcccttgt tgcagatcca ccaggaagac ttccggtgcc gggttgtcga tcaccagcga
      721 gcagcgacgc gctgcggtga gcaggatttc cgtcacttct tcactgttgg catcagcagg
      781 ggccggaatc gtcaacacta cgcgcgtaac cgagtcagag agcgaccagt tgataaactg
      841 ctcggtaata aacgccttgt tcggcacgat tatctcttta cggtcccagt cgctgatggt
      901 ggtggcgcgg gtgttaattt tcgtcacgct accggtgaga tcgcgaattg tcaccgtatc
      961 gccaatgcga atcggttttt cgaacaggat aatcagacca gagataaagt tggcgaaaat
     1021 ttcctgcaaa ccaaaaccga gaccaacacc gagcgcggcg accagccact gcaatttcga
     1081 ccattcaata ccaatcatcg agaagccgac cagcccgcca atcagcatca gcagatattt
     1141 ggtgatggtg gtgatggcgt agcctgtacc cggcgttaaa tccaggtgct gcaaaatcgc
     1201 cagttccagc agcgcgggca ggttgcgcac cagctgcgtg gtgatgataa acaccagaat
     1261 ggcaatcagc accgcaccga gggtaattgg ctccagactt tctacgcctt gtaccgtgga
     1321 ggtgacatcc cacagcgaaa tattttcgag gaagccgaaa gcggaatgga tttctgacca
     1381 cagcacaatg acagaaagca gggcgatcaa catcaaaatt gagcgcacca gccgcaagga
     1441 ttgcgcactg atggcatcga gatcgacttc gctttcatcg acttcaattg ctccttccgg
     1501 gctactgtga tgatgcgctt cctcttcgcc acgcgcacgt tgcgctaaca tctctgcccg
     1561 gcgatgcttc gcccggtcaa acgccagcct gcggcgctgg atcagcatcc agcggcggat
     1621 aacgtgataa accaccagta gcaggaacca gatggcaacc gaggtttcaa gcctcgctaa
     1681 cagcgcctgt gccgttgcca gataacccac agccgacgcc agaatggcaa ccaacggcgc
     1741 gccaatcatc atgttccaca gcatatggtt ggtaatgttg tcgccgctgc cctctttgtt
     1801 gagatacagt gggatcccgg cctttttcag gctgagggtg accaccgcca gcgcaccgca
     1861 aatgaggata aagcaaagcc gtcccagcga accggagaat tcacggtcgt cgaggttatc
     1921 gaacatcatc agcgccataa tcagcggcac aataagcccg atgctcatca ggtagtagcg
     1981 catcccacgg gaaacacgtt cgcgcggcca gccaaaatga gcgataaaca agccgttcgg
     2041 gcgggcaaag gtggcgcaaa tcatcactac ccacagcagc ggcacggtag ccgttacacc
     2101 atcgccaatc gcgaccgcca gcggataagg ccacgcctcg cgcaagccgt aacccagcgt
     2161 catccacagc accggtaacg gtgacgcgac gagaatcgac cagaaaagag tgcgcaacgt
     2221 cagccagaag tgatcctgag tcactttgcc aactttcgcc gccgaacgtt caagaaaacg
     2281 ggtgaaatag cggcgcgagt aaatactgca accgaccaga atcaacgcgc caaacagcgg
     2341 caaaattgtc tctttgctcg tcagcatcat cacactggct ttgcccaact gactgaaggt
     2401 gtccagcgaa atgagacgac gcagatcctg ggcgatttcc agcggccagg cgatggtcat
     2461 cgggcgcacg tcagaggtcc agaacagata gcggtgcgtt gcttcgttca cctctttcag
     2521 cgcatcctcc agttgcccgt tggagacttt cagcttggtc agttccaata gtagcgtgtc
     2581 gccaccctgc aacaatgagt tcagcaactc acgctgagtg cgcagttgtg cttccagaat
     2641 acggttttgc tcggcggtca gcggctgacc gtcggcctga tggatttgcc gtagcagcgg
     2701 ctgtttatta agcagatcct cataacgtaa ccgttgcaca cgcaactgcg ccatttcggt
     2761 atcaagctgt tgtggttttg gcatttctgg cagccgtgcc acctgcgccc gcagcgcttc
     2821 gccgagcaga ttggacgatc ccagccattg cgactgttca cgcagcgtat tcaacgcctg
     2881 ccggacctgt aacgtctggc tggcagcctg acgctgttgc gaggcaacga gatccatccg
     2941 ctgcgcctgt tgattcaaag ccgccgatag ttcgcggtta attttgaatt gcgcgacgat
     3001 atctttcggc aaatcggcgc tgttttctgc cagcaattcg gtactttcca gcgcccgctc
     3061 cgcctcaagc tgacgttggc tgtttaattg attacgcaag gcctgcaaat acgcatccag
     3121 ttgctggctc tctttttccg ccagctctga gcgtaagcgc gctaattcct ggcggttatt
     3181 ggcagacagc tgcgccagct ccagttcatc aacgagcgcc ttaagacgtg cagagtcaga
     3241 ctgcaacgcg aaattttgtg cctgattgag cggagtattg ccggtaagcg ttcccaggcg
     3301 gcgctcgatc tcatttaact gacggcgggc gtcggtttgc tgttgcggca gttgattcag
     3361 cgaatcggca atctcgcggg tgcgctcctg ctcttgctgg gcctgacggc ttttatccag
     3421 caactggctg ctgacctgga gaatttcctg attcagcgcg tcggtagaca ttcccggcga
     3481 cacgctgcgc ggctcgtcac gcatgttgtt taattgtgcg cgcagagtag cggagagttt
     3541 cggataatta tcgataactt gctgatattg tttgatgcgc tcaagggaac cttttcgttc
     3601 ctcaagcgca tttaaggcag actggagcgc ctctacgact tccggctgtg cgggtttcgc
     3661 cgcttttgcc tgctccagtt cctgagtgat ttgtttgcta tcgggggccg tcgcggcgta
     3721 cgccccccaa ctgaggcacc aggccatcag aaaagtgata atcaggcgca cgtcagcgtt
     3781 tcctttgatg gattagacct ggtctttttt atcgtcaacc aatgggctgg cgtcgtgttc
     3841 tgcttcgatc tcttcagcag gaagtggggc gggttcagcg tctggcgtaa caaaggtttc
     3901 ggtagatact gccagcggct ggccaatttt cgtgacagac aggctttcca gttgctcaac
     3961 cagattcact ttacccggtg caaacaggtt gataacggtg gaaccgagtt taaagcgacc
     4021 catttcctgg cctttcagca gtgccacaga accgtcgttt tccccggcag gccaggtcca
     4081 gcgcttgatg ataccttcgc gcggcggcgt aatggtgccc gcccagaccg tctcaatgct
     4141 gccaacaatc gtcgctccga ccagaatctg cgccattggg ccaaattcgg tatcgaaaag
     4201 gcaaatcacg cgttcgttac gggcaaacag attcggcacg ttctgagcgg tgagatggtt
     4261 aacggagaag agatcgcccg gcacgtagat catctcacgc agaataccgt tgcacggcat
     4321 gtgtacgcga tggtagtcac gcggggagag gtaagtggtc acaaacgtac cgttgcggaa
     4381 caggtccgcc atcagatagt tgcctgccag cagggcttcg aggctgtagt tgtggccttt
     4441 ggcttgcagg attttatctt cttcgatttt acccaactgg ctgataacgc catcggcagg
     4501 catgaccagt acattcggat cggtatcgat tgggcgtact tcgtcacgca gcggacggac
     4561 aaagaattcg ttaaaggtgc ggtagctggc ggtgtccggc ttttgcgcct ctttcatgtc
     4621 gaccttgtag tatttaacga acagatcgat aaccagtttt gtcagccatc ctgcccgctt
     4681 gcttgcgccc caacccgcca ggcgagtaag ccatagtttc ggcagaatgt actgtagcga
     4741 aagtttaaat gaatttaaca aggtagcctc caggccattg ttttgtcgtt cctgatccgg
     4801 ccaacatgcc ggatcctgaa aaaaagggga cgattctaac gacggttagc ttaattgtca
     4861 gtcatccgta tcagaaaagt ttttacgcgt ttttacctgc gccatgcttt ccagaatacg
     4921 gtgatagttt tcgaaacggg tttccgcgat tttcccttcc tcaaccgctt cccggatagc
     4981 gcagcccgga tcggtatcgt gtttgcaatc gcgatattta cacagaccta aatagtcatg
     5041 gaattcgaca aagccctgag tgatttgttc cggctccagg tgccagaggc cgaactcacg
     5101 cacaccaggg gaatcaatca catcaccgcc gtgcgggaag tgatacagcc gagcggcggt
     5161 cgtggtgtgc tgaccgagcc ccgagttgtc agagacatcg ttggtcagga tctctttttg
     5221 cagccccagc aactcattca gcaggctgga tttgccgacg ccagactgcc cggcaaaaat
     5281 gctgatgcgc ccggtcaacg cctcttccag cggttttagc ccatcctgag tatggctgga
     5341 aaccatcaat acgcgataac cgatattgcg gtagatatcc atctgctcgt tgacgaacgc
     5401 catgccttcg tcgtccagca ggtctatctt gttgagcaca ataatcggct caatctgcaa
     5461 ggtttcgcag gccaccaggt aacggtcgat aatattgagt gacagctccg gcaaaatggc
     5521 ggagacaatg acaatctggt cgatgttggc ggcaataggt tttacgccgt cgtagaaatc
     5581 cggacgcgtc aacaccgagg tacgctcatg caccgcttcc acgatccctt tgacatttac
     5641 gccttccgcc gccggtttac ccggacgcca gactacacgg tcgccggtca ccagcgaacg
     5701 gatggtacgg cgaatattgc agcggtgaac gtcgccatcg gcggattcca catcagcgtg
     5761 cataccaaag cggctgatga cgataccttc atcaggctcg ccaaacagat tgtcgtcgta
     5821 gtcgggcttc tccttagacg ttttaagacg acgctggtga ttggcgttca cgcggcgctg
     5881 ctggcctttg gagagtttat ttttactcaa tcgtacagac tcctggtcgc ccctgatggg
     5941 caaaacatct atgatacacg caattgtgga tcaatatagt cactgtgaat gggtggaaaa
     6001 tagcatgagt gccaatgaaa acaacctgat ttggatcgat cttgagatga ctggtctgga
     6061 tcccgagcgc gatcgcatta ttgagattgc cacgctggtg accgatgcca acctgaatat
     6121 tctggcagaa gggccgacca ttgcagtaca tcagtccgat gaacagctgg cgctgatgga
     6181 tgactggaac gtgcgcaccc ataccgccag cgggctggta gagcgcgtga aagcgagcac
     6241 gatgggcgat cgggaagctg aactggcaac gctcgaattc ttaaaacagt gggtgcctgc
     6301 gggaaaatcg ccgatttgcg gtaacagcat cggacaggac cgtcgtttcc tgtttaaata
     6361 catgccggag ctggaagcct acttccacta ccgttatctc gatgtcagca ccctgaaaga
     6421 gctggcgcgc cgctggaagc cggaaattct ggatagtttt accaagcagg ggacgcatca
     6481 ggcgatggat gatatccgtg aatcggtggc ggagctggct tactaccgcg agcattttat
     6541 caagctgtaa aatttttcct ggtcacgtaa gcgccggaat ccacttgcgg cggcgtgatt
     6601 ttgacgctaa attgaacgtc ttgctgataa tttcagcact tgagataaaa acgcaaaaaa
     6661 aacttttttg gggggttgca gagggaaaga tttctcgtat aatacgcctc ccgtaacgac
     6721 gcagaaatgc gaaaattacg aaagcaaaat taagtagtac gcgggaatag ctcagttggt
     6781 agagcacgac cttgccaagg tcggggtcgc gagttcgagt ctcgtttccc gctccaaaat
     6841 ttgaa
//
LOCUS       DAJVUP010000196         6803 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.196, whole genome shotgun sequence.
ACCESSION   DAJVUP010000196 DAJVUP010000000
VERSION     DAJVUP010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6803
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.196"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            188..2104
                     /gene="dnaK"
                     /locus_tag="OQQ75_003804"
     CDS             188..2104
                     /gene="dnaK"
                     /locus_tag="OQQ75_003804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HCS1977964.1"
                     /translation="MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ
                     DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW
                     VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
                     LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
                     DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
                     DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
                     NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
                     EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
                     SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD
                     DVVDAEFEEVKDKK"
     gene            2193..3323
                     /gene="dnaJ"
                     /locus_tag="OQQ75_003805"
     CDS             2193..3323
                     /gene="dnaJ"
                     /locus_tag="OQQ75_003805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HCS1977965.1"
                     /translation="MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
                     AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF
                     GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT
                     CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA
                     GVDTGDRIRLAGEGEAGQHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL
                     GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN
                     EKQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR"
     gene            complement(3427..3579)
                     /gene="mokC"
                     /locus_tag="OQQ75_003806"
     CDS             complement(3427..3579)
                     /gene="mokC"
                     /locus_tag="OQQ75_003806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin MokC"
                     /protein_id="HCS1977966.1"
                     /translation="MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF
                     TAYESE"
     gene            4165..5331
                     /gene="nhaA"
                     /locus_tag="OQQ75_003807"
     CDS             4165..5331
                     /gene="nhaA"
                     /locus_tag="OQQ75_003807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HCS1977967.1"
                     /translation="MKHLHRFFSSDASGGIILIIAAILAMMMANSGATSGWYHDFLET
                     PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI
                     GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
                     IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTA
                     VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
                     QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMAVGIL
                     CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV"
     gene            5397..6296
                     /gene="nhaR"
                     /locus_tag="OQQ75_003808"
     CDS             5397..6296
                     /gene="nhaR"
                     /locus_tag="OQQ75_003808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705976.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HCS1977968.1"
                     /translation="MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEE
                     RLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADA
                     LSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL
                     FSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEI
                     LGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERM
                     IQHPAVQRICNTDYSALFSPAAR"
     gene            complement(6334..>6803)
                     /locus_tag="OQQ75_003809"
     CDS             complement(6334..>6803)
                     /locus_tag="OQQ75_003809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000871680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial family protein"
                     /protein_id="HCS1977969.1"
                     /translation="RFNYNLNTILLVNLMTCGFEDQSIDTGRFVLSRINNENYQFHHI
                     RFDCIQGEQGELVFEPSDVEYYFEPVTIQESGTSILKNELENSEDGAGQVGFQLSNDG
                     TNEIQYGKSNYYSFQHPHEGSNQIPLFIRPRTYGNNVSSGQIMSRVKIVVMYN"
BASE COUNT         1739 a         1601 c         1757 g         1706 t
ORIGIN      
        1 ttctgcgcaa aagcacaaaa aatttttgca tctccccctt gatgacgtgg gttacgaccc
       61 catttagtag tcaaccgcag tgagtgagtc tgcaaaaaaa tgaaattggg cagttgaaac
      121 cagacatttc gcccctatta cagactcaca accacatgat gaccgaatat atagtggaga
      181 cgtttagatg ggtaaaataa ttggtatcga cctgggtact accaactctt gtgtagcgat
      241 tatggatggc accactcctc gcgtgctgga gaacgccgaa ggcgatcgca ccacgccttc
      301 tattattgcc tatacccagg atggtgaaac tctggttggt cagccggcta aacgtcaggc
      361 agtgacgaac ccgcaaaaca ccctgtttgc gattaaacgc ctgattggcc gccgcttcca
      421 ggacgaagaa gtacagcgtg atgtttccat catgccgttc aaaattattg ctgctgataa
      481 cggcgacgca tgggtcgaag ttaaaggcca gaaaatggca ccgccgcaga tttctgctga
      541 agtgctgaaa aaaatgaaga aaaccgctga agattacttg ggtgaaccgg taactgaagc
      601 tgttatcacc gtaccggcat actttaacga tgctcagcgt caggcaacca aagacgcagg
      661 ccgtatcgct ggtctggaag taaaacgtat catcaacgaa ccgaccgcag ctgcgctggc
      721 ttacggtctg gacaaaggta ctggcaaccg tactatcgcg gtttatgacc tggggggtgg
      781 tactttcgat atttctatta tcgaaatcga cgaagttgat ggcgaaaaaa ccttcgaagt
      841 tctggctacc aacggtgata cccacctggg tggtgaagac ttcgacagcc gtctgatcaa
      901 ctacctggtt gaagaattca agaaagatca gggcattgac ctgcgcaacg atccgctggc
      961 aatgcagcgc ctgaaagaag cggcagaaaa agcgaaaatc gaactgtctt ccgctcagca
     1021 gaccgacgtt aacctgccgt acatcactgc agatgcgacc ggtccgaaac acatgaacat
     1081 caaagtgact cgtgcgaaac tggaaagctt ggttgaagat ctggtaaacc gttccattga
     1141 gccgctgaaa gttgcactgc aggacgctgg cctgtccgta tctgatatcg acgacgttat
     1201 cctcgttggt ggtcagactc gtatgccaat ggttcagaag aaagttgctg agttctttgg
     1261 taaagagccg cgtaaagacg ttaacccgga cgaagctgta gcaatcggtg ctgctgttca
     1321 gggtggtgtt ctgactggtg acgtgaaaga cgtactgctg ctggacgtta ccccgctgtc
     1381 tctgggtatc gaaaccatgg gcggtgtgat gacgacgctg atcgcgaaaa acaccactat
     1441 cccgaccaag cacagccagg tgttctctac cgctgaagac aaccagtctg cggtaaccat
     1501 ccatgtgctg cagggtgaac gtaaacgtgc ggctgataac aaatctctgg gtcagttcaa
     1561 cctggatggt atcaacccgg caccgcgcgg catgccgcag atcgaagtta ccttcgatat
     1621 cgatgctgac ggtatcctgc acgtttccgc gaaagataaa aacagcggta aagagcagaa
     1681 gatcaccatc aaggcttctt ctggtctgaa cgaagatgaa atccagaaaa tggtacgcga
     1741 cgcagaagct aacgccgaag ctgaccgtaa gtttgaagag ctggtacaga ctcgcaacca
     1801 gggcgaccat ctgctgcaca gcacccgtaa gcaggttgaa gaagcaggcg acaaactgcc
     1861 ggctgacgac aaaactgcta tcgagtctgc actgactgca ctggaaactg ctctgaaagg
     1921 tgaagacaaa gccgctatcg aagcgaaaat gcaggagctg gcacaggttt cccagaaact
     1981 gatggaaatc gcccagcagc aacatgccca gcagcagact gccggtgctg atgcttctgc
     2041 aaacaacgcg aaagatgacg atgttgtcga cgctgaattt gaagaagtca aagacaaaaa
     2101 ataatcgccc tataaacggg taattatact gacacgggcg aaggggaatt tcctctccgc
     2161 ccgtgcattc atctaggggc aatttaaaaa agatggctaa gcaagattat tacgagattt
     2221 taggcgtttc caaaacagcg gaagagcgtg aaatcaaaaa ggcctacaaa cgcctggcca
     2281 tgaaatacca cccggaccgt aaccagggtg acaaagaggc cgaggcgaaa tttaaagaga
     2341 tcaaggaagc ttatgaagtt ctgaccgact cgcaaaaacg tgcggcatac gatcagtatg
     2401 gtcatgctgc gtttgagcaa ggcggcatgg gcggcggcgg ttttggcggc ggcgcagact
     2461 tcagcgatat ttttggtgac gttttcggcg atatttttgg cggcggacgt ggtcgtcaac
     2521 gtgcggcgcg cggtgctgat ttacgctata acatggagct caccctcgaa gaagctgtac
     2581 gtggcgtgac caaagagatc cgcattccga ctctggaaga gtgtgacgtt tgccacggta
     2641 gcggtgcaaa accaggtaca cagccgcaga cctgtccgac ctgtcatggt tctggtcagg
     2701 tgcagatgcg tcagggtttc tttgccgtgc agcagacctg tccacactgt cagggccgcg
     2761 gtacgctgat caaagatccg tgcaacaaat gtcatggtca tggtcgtgtt gagcgcagca
     2821 aaacgctgtc cgttaaaatc ccggcagggg tggacactgg agaccgcatc cgtcttgcgg
     2881 gcgaaggtga agcgggccag catggcgcac cggcaggcga tctgtacgtt caggttcagg
     2941 ttaaacagca cccgattttc gagcgtgaag gcaacaacct gtattgcgaa gtcccgatca
     3001 acttcgctat ggcggcgctg ggtggcgaaa tcgaagtacc gacccttgat ggtcgcgtca
     3061 aactgaaagt gcctggcgaa acccagaccg gtaagctttt ccgtatgcgc ggtaaaggcg
     3121 tcaagtctgt ccgcggtggc gcacagggtg atttgctgtg ccgcgttgtc gtcgaaacac
     3181 cggtaggcct gaacgagaag cagaaacagc tgctgcaaga gctgcaagaa agcttcggtg
     3241 gcccaaccgg cgagcacaac agcccgcgct caaagagctt ctttgatggt gtgaagaagt
     3301 tttttgacga cctgacccgc taacctcccc aaaagcctgc ccgtgggcag gcctgggtaa
     3361 aaatagggtg cgttgaagat atgcgagcac ctgtaaagtg gcggggatca ctccccgccg
     3421 ttgctcttac tcggattcgt aagccgtgaa aacagcaacc tccgtctggc cagttcggat
     3481 gtgaacctca cagaggtctt ttctcgttac cagcgccgcc actacggcgg tgatacagat
     3541 gacgatcagg gcgacaatca tcgccttatg ctgcttcatt gctctcttct ccttgacctt
     3601 acggtcagta agaggcactc tacatgtgtt cagcatatag ggggcctcgg gttgatggta
     3661 aaatatcact cggggctttt ctctatctgc cgttcagcta atgcctgaga cagacagcct
     3721 caagcacccg ccgctattat atcgctctct ttaacccatt ttgttttatc gattctaatc
     3781 ctgaagacgc ctcgcatttt tgtggcgtaa ttttttaatg atttaattat ttaactttaa
     3841 tttatctctt tatcgcaatt attgacgaca agctggatta tttttgaaat attgtcctaa
     3901 caaataacgc cgactgacaa gaaattaatt attacttttc ctaattaatc cctcagaaat
     3961 cctcacctta agctatgatt atctgagctt agggtcactc gtcagcgctt acagccgtca
     4021 aaaactcatc tcaccgctga tggcgaaaat tctacaaagg ctcgtaaaaa acgaattatt
     4081 cctacactat aatctgattt taacgatgat tcgtgcgggg taaaatagta aaaacgattt
     4141 attcacctga aagagaaata aaaagtgaaa catctgcatc gattctttag cagtgatgcc
     4201 tcgggaggca ttattcttat cattgccgct atcctggcga tgatgatggc caacagcggc
     4261 gcaaccagtg gatggtatca cgactttctg gagacgccgg ttcagctccg ggttggttca
     4321 ctcgaaatca acaaaaacat gctgttatgg ataaatgacg cgctgatggc ggtatttttc
     4381 ctgttagtcg gtctggaagt taaacgtgaa ctgatgcaag gatcgctagc cagcttacgc
     4441 caggccgcat ttccagttat cgccgctatt ggtgggatga ttgtgccggc attactctat
     4501 ctggccttta actatgccga tccgattacc cgcgaagggt gggcgatccc ggcggctact
     4561 gacattgcct ttgcacttgg agtgctggcg ctgttgggaa gtcgtgttcc gttagcactg
     4621 aagatctttt tgatggctct ggctattatc gacgatcttg gggccatcat tatcatcgca
     4681 ttgttctaca ctaatgactt atcgatggcc tctcttggcg tcgcggctgt agcaattgcg
     4741 gtactcgcgg tattgaatct gtgtggtgta cgccgcacgg gcgtctatat tctggttggc
     4801 gtagtgttgt ggactgcggt gttgaaatcg ggggttcacg caaccttggc gggggtaatt
     4861 gtcggcttct ttattccttt gaaagagaag catgggcgtt ctccagcgaa gcgactggag
     4921 catgtgttac acccgtgggt ggcgtatctg attttgccgc tgtttgcatt tgctaatgct
     4981 ggcgtttcac tgcaaggcgt cacgctggat ggcttgacct ccattctgcc attggggatc
     5041 atcgctggct tgctgattgg caaaccgctg gggattagtc tgttctgctg gttggcgctg
     5101 cgtttgaaac tggcgcatct gcctgaggga acgacttatc agcaaattat ggcggtgggg
     5161 atcctgtgcg gtatcggttt tactatgtct atctttattg ccagcctggc ctttggtagc
     5221 gtagatccag aactgattaa ctgggcgaaa ctcggtatcc tggtcggttc tatctcttcg
     5281 gcggtaattg gatacagctg gttacgcgtt cgtttgcgtc catcagtgtg acaggacggt
     5341 ttaccgggga gccataaacg gctccctttt cattgttatc agggagagaa atgagcatgt
     5401 ctcatatcaa ttacaaccac ttgtattact tctggcatgt ctataaagaa ggttccgtgg
     5461 ttggcgcagc ggaggcgctt tatttaactc cacaaaccat taccggacag atccgggctc
     5521 tggaagagcg cctgcaaggc aaattattta agcgcaaggg acgtggtctc gaacccagcg
     5581 agctgggaga actggtctat cgctatgccg ataaaatgtt caccttaagc caggaaatgc
     5641 tggatattgt gaactatcgc aaagaatcca atttattgtt tgacgttggc gtggctgatg
     5701 cactttccaa acgcctggtc agtagcgtgc tgaatgctgc agtggtagaa ggcgagccga
     5761 ttcatcttcg ctgcttcgaa tccacccacg aaatgctact ggagcaatta agccagcata
     5821 aactggatat gatcatttcc gactgtccga tagactctac gcagcaggaa ggcctgttct
     5881 ccgtgagaat tggcgaatgt ggcgtgagtt tctggtgtac aaatccacca ccagaaaaac
     5941 cgttcccggc ttgtctggaa gaacggcgac ttttgattcc tgggcgacgt tcaatgttag
     6001 ggcgcaaatt gcttaactgg tttaactccc agggattaaa cgtagaaatc ctcggcgagt
     6061 ttgatgatgc cgcgttgatg aaagcttttg gtgcaatgca caatgcaatc ttcgttgccc
     6121 caacgcttta tgcatatgac ttttatgccg ataaaactgt cgtagaaatt ggtcgcgtcg
     6181 agaatgtgat ggaagagtac catgctattt ttgctgagcg gatgattcag cacccggcgg
     6241 tacagcgaat ctgcaatacg gattattctg cgctttttag tccagcggcg cgttaatcgg
     6301 cagctccccc aaagttaaag tggaggagat agattagttg tacataacca cgattttgac
     6361 tcggctcatt atttgcccgc ttgagacatt atttccatat gtacgcgggc gaataaatag
     6421 aggaatctga ttacttcctt catggggatg ctgaaaagag tagtaattgc ttttaccata
     6481 ctggatttca ttcgtaccat cattggagag ttgaaagcct acttgacccg caccgtcctc
     6541 actgttttct aactcatttt ttaatatgct ggttcctgac tcctgtatcg tcactggttc
     6601 aaagtaatat tcaacatcac tgggttcaaa aactaattca ccttgctcgc cctggatgca
     6661 gtcaaatctt atatgatgaa actgataatt ttcattattg atacgagaca gtacaaatcg
     6721 tccagtgtcg atggattgat cttcaaaacc acaggtcatt aaatttacca gtaaaatagt
     6781 atttaaatta taattaaagc gga
//
LOCUS       DAJVUP010000197         6677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.197, whole genome shotgun sequence.
ACCESSION   DAJVUP010000197 DAJVUP010000000
VERSION     DAJVUP010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.197"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(210..485)
                     /locus_tag="OQQ75_003810"
     CDS             complement(210..485)
                     /locus_tag="OQQ75_003810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000187070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977970.1"
                     /translation="MTPEKHPETTMKRHRLTEAEERRLAEAIAAEARAMGLTKKDKMP
                     QETKRRLRARILKAILDERTASKNREATLTAGQDPDDTFTWQPLRRR"
     gene            719..2812
                     /locus_tag="OQQ75_003811"
     CDS             719..2812
                     /locus_tag="OQQ75_003811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-type pyocin domain-containing protein"
                     /protein_id="HCS1977971.1"
                     /translation="MSDYEGSGPTEGIDYGHSMVVWPSTGLISGGDVKPGGSSGIAPS
                     MPPGWGDYSPQGIALVQSVLFPGIIRRIILDKELEEGDWSGWSVSVHSPWGNEKVSAA
                     RTVLENGLRGGLPEPSRPAAVSFARLEPASGNEQKIIRLMVTQQLEQVTDIPASQLPA
                     AGNNVPVKYRLMDLMQNGTQYMAIIGGIPMTVPVVDAVPVPDRSRPGTNIKDVYSAPV
                     SPDLPDLVLSVGQMNTPVLSNPEIQEEGVIAETGNYVEAGYTMSSNNHDVIVRFPEGS
                     GVSPLYISTVEILDSNGLSQRQEAENKAKDDFRVKKEEAVARAEAEKAKAELFSKAGV
                     NQPPVYTQEMMERANSVMNEQGALVLNNTASSVQLAMTGTGVWTAAGDIAGNISKFFS
                     NALEKVTIPEVSPLLMRISLGALWFHSEEAGAGSDIVPGRNLEAMFSLSAQMLAGQGV
                     VIEPGATSVNLPVRGQLINSNGQLALDLLKTGNESIPAAVPVLNAVRDTATGLDKITL
                     PAVVGAPSRTILVNPVPQPSVPTDTGNHQPVPVTPVHTGTEVKPVEMPVTTITPVSDV
                     GGLRDFIYWRPDAAGTGVEAVYVMLNDPLDSGRFSRKQLDKKYKHAGDFGISDTKKNR
                     ETLTKFRDAIEEHLSDKDTVEKGTYRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKIN
                     PDADNGRIYLETGEL"
     gene            2809..3072
                     /locus_tag="OQQ75_003812"
     CDS             2809..3072
                     /locus_tag="OQQ75_003812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032488334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin D immunity protein"
                     /protein_id="HCS1977972.1"
                     /translation="MNKMAIIDLAKLFLASKITAIEFSERICVERRRLYGVKDLSPNI
                     LNCGEELFMAAERFEPDADRADYEIDDNGLKVEVRSILEKFKL"
     gene            3142..3288
                     /locus_tag="OQQ75_003813"
     CDS             3142..3288
                     /locus_tag="OQQ75_003813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_072020761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="HCS1977973.1"
                     /translation="MKKKIGGSMILVLAVLCLTACQANYVRDVQGGTIAPSSSSKLIG
                     VAVQ"
     gene            complement(4336..4527)
                     /locus_tag="OQQ75_003814"
     CDS             complement(4336..4527)
                     /locus_tag="OQQ75_003814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1977974.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADDQADICEALHDH
                     ADELYRSCLARFGDDGENL"
     gene            4595..4918
                     /locus_tag="OQQ75_003815"
     CDS             4595..4918
                     /locus_tag="OQQ75_003815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HCS1977975.1"
                     /translation="MLTIRVTDEEHARLLARCEGKQLASWMRKVCLGAPPSKTSGLPT
                     LAPPLLRQFASVGNNLNQIARKINSGQWSGHDRVHVVAALMAIGRELSELRDEVRKQG
                     ERDDS"
     gene            4881..5624
                     /locus_tag="OQQ75_003816"
                     /pseudo
     CDS             4881..5624
                     /locus_tag="OQQ75_003816"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            5596..6156
                     /locus_tag="OQQ75_003817"
     CDS             5596..6156
                     /locus_tag="OQQ75_003817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="HCS1977976.1"
                     /translation="MSNLLQMGTDFEKKLKERAVSTENILNSEFRKLEASVDRELNLN
                     GQKIRDAISAHTAAVKEQLETLNSAVNAQFSATENELARRQEELLWKLVKGRILYPSL
                     TALCVTGGIFLASWGLIQWQESRIAANILAIRDQEETLAKLREKTWGVTYHEGRNGKF
                     LVLPSGVKGENNWTVEKKNAVRLVRE"
     gene            6163..6396
                     /locus_tag="OQQ75_003818"
     CDS             6163..6396
                     /locus_tag="OQQ75_003818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HCS1977977.1"
                     /translation="MTELEMHLLNALEQLQQDYTQRLKDWESAFTDLQHMFELTRQEN
                     GQLREQCDDLSQQVQRLVEQVDHLSRLFITNSR"
BASE COUNT         1670 a         1418 c         1934 g         1655 t
ORIGIN      
        1 aaaaaaaaca gtgtcatgag gtttacgcag gcaaaaccag cgttattcac atggctgaat
       61 agctatgcat acggttaaaa tttatcaggt gcgatcgcgg cagcttttcg ggtggtttgt
      121 tgctattttt acctgtcagc agccgtgatc gcgctgaacg catttcagcg gtgcgtacaa
      181 ttaaggggtt atgttaaata acccttagct tagcggcggc gcagtggttg ccaggtgaag
      241 gtgtcatccg ggtcctgtcc ggcagtcagt gtggcttctc gatttttgct ggccgttcgt
      301 tcatcaagaa tggctttaag tatccgtgcc cggaggcgtc gctttgtttc ctgcggcatt
      361 ttgtcctttt tcgtcagccc catggcacga gcttcagcgg caatggcttc tgccagtcgg
      421 cgctcttcgg cttcggtcag tctatggcgt ttcatggtgg tctccggatg tttctctggt
      481 gtcataacag tttaactgtt ggctctctcc ttatgctaat cagccttctt tcatgcctgt
      541 tgccattgag tttaagaatg attggttgtt tttcttgagc gttttcacaa aaacgtaaat
      601 ccagtgggtt gacaggattt acgaggtgac gtaacttttc actgtatata aaaccactgg
      661 ttttatatac agtttgttgt ttttaacgca ttgttttaaa agtcaaagag gtatttttat
      721 gagtgattac gaaggtagtg gtccgacaga aggtattgat tatgggcact cgatggtcgt
      781 gtggccgtca acaggactga tttcgggtgg tgatgtgaaa ccaggaggct catcaggtat
      841 cgctccatcc atgcctccgg gatgggggga ttacagccca cagggtatcg cacttgtaca
      901 aagtgttctt tttccgggaa ttattcgccg gattattctg gataaggaac ttgaagaggg
      961 agactggtcg ggatggtctg tcagtgtgca tagcccttgg ggaaacgaga aagtttccgc
     1021 tgcacgaaca gttcttgaga atggtttacg tggtggtttg ccagaaccgt ctcgcccggc
     1081 tgctgtttct tttgcccgtc tggagcctgc ttccggaaat gagcaaaaaa ttattcgtct
     1141 tatggttaca cagcaactgg aacaggtaac ggatattccg gccagccagt taccagcagc
     1201 gggtaataat gtaccggtga aatatcgtct gatggacctt atgcagaacg gtacgcaata
     1261 tatggctatt atcggaggta ttccgatgac agtgccggta gttgatgccg ttccagttcc
     1321 ggaccggagt cgtccgggaa caaatattaa agatgtttac agtgcccctg tatcaccaga
     1381 tctaccggac ctggtattaa gtgtgggtca gatgaatact ccggttctgt ctaatcccga
     1441 aattcaggaa gaaggagtta ttgctgagac aggtaattat gttgaggctg gttatacgat
     1501 gtccagtaat aatcatgatg tcattgttcg ttttcctgaa ggcagtggtg tttctccgtt
     1561 atatatttca actgtagaga ttctggacag taatggtctg agtcagcgtc aggaagccga
     1621 aaataaagca aaggatgatt tcagagtcaa gaaagaagaa gcggtagccc gggctgaagc
     1681 tgaaaaagca aaagccgagt tatttagtaa agcaggtgtg aaccagcctc ctgtatatac
     1741 acaggaaatg atggaaaggg ctaattcagt aatgaatgag cagggagctc ttgttctgaa
     1801 taacactgcc agttctgtac aactggcgat gaccggaact ggtgtctgga ctgctgctgg
     1861 tgatattgca ggcaacataa gcaagttttt cagtaatgct ctggagaaag taaccatacc
     1921 cgaagtgagt cccctgctta tgcggatttc tcttggtgct ctgtggtttc attcagaaga
     1981 agctggagca ggaagtgata tcgtgccggg gcgaaatctg gaggcgatgt tttcgctgag
     2041 tgctcagatg ttggctggac agggcgtggt cattgaacct ggtgcgacga gtgtaaatct
     2101 gcctgttcgt ggacaattga taaacagtaa cgggcaatta gctctggatt tactgaaaac
     2161 agggaatgaa agtatcccgg ctgcggttcc tgttcttaat gctgtccgtg atacagcaac
     2221 aggactggat aaaatcacgt taccagcagt agtaggcgca ccttcccgga cgattctggt
     2281 taatccggta ccacaacctt cggtgccaac agatacaggt aatcatcaac ccgttccggt
     2341 tacaccagtg catacaggaa cggaagtaaa accggtcgaa atgccagtaa cgacgattac
     2401 tcctgtttct gatgttggtg gactacgaga ttttatttac tggcgtcctg atgctgctgg
     2461 gactggtgtt gaagctgttt atgtgatgct taatgatcct ctggattcag ggcgattttc
     2521 gcgtaaacaa cttgataaaa aatataaaca tgctggtgat tttggtatta gtgatacaaa
     2581 aaagaatcgt gaaactctta ctaaattcag ggatgctatt gaggagcatt tatcggataa
     2641 ggatacagta gagaaaggaa cataccgaag agaaaaaggt tcaaaagttt attttaatcc
     2701 taatacgatg aatgtggtta taattaagtc aaatggtgag ttcttatctg ggtggaaaat
     2761 aaatccagat gcggataatg gtcgaattta tttagagaca ggtgaactat gaacaagatg
     2821 gcaataatcg atttggcgaa attattttta gcttcgaaaa ttacagcaat tgagttttca
     2881 gagcgaattt gtgttgaacg gagaagattg tatggtgtta aggatttgtc tccgaatata
     2941 ttaaattgtg gggaagagtt gtttatggct gctgagcgat ttgagcctga tgcagatagg
     3001 gctgattatg aaattgatga taatggactt aaggttgagg tccgatctat cttggaaaaa
     3061 tttaaattat aatcatgagt gattttaata tctggcattt aagtataaat gtcagatatt
     3121 cactcatgac aaggagatgt catgaaaaaa aagatagggg gatctatgat tctcgttctt
     3181 gctgttttgt gtctgactgc ttgccaagct aactatgtaa gggatgttca gggaggaaca
     3241 attgctccat catcatcttc gaaactaatc ggggtggcgg ttcagtgaaa aatattaaag
     3301 gatcttcttg agatcctttt tttctgcgcg taatctgctg cctgtaaacg aaaaaacccg
     3361 ccttgtggcg ggtccttccg tccgatcaga agtcttcgac ctcttctaat cggcggtggt
     3421 aactggcttg gaggagcaca gtcaccaaaa ctgtcttttc agtttagcct taactggttc
     3481 ataacttcaa gagcaactcc tctaaatcag ttaccaatgg ctgctgccag tggcgttgag
     3541 tcgtgtcttt tccgggttgg ccccaagaga acagttaccg gagaaggtgc agcagtcggg
     3601 ctgaacgggg ggttcctgca tacagcccgg cccggagcga actgcctaag tcgccccgag
     3661 ataccagaag acgtgagcta tgagaaagcg ccacgtgtcc cgcaagggag aaaggcggaa
     3721 aaggtatccg gcaatcgata tggcgggaac gtgggggcgc aggagggagc gattcaccgg
     3781 aaacggtgat gatctttaag ccacgtcggg tttcgccacc gctggcggat ttcatggttg
     3841 agtcggaaga ctcccacaga tgcaccgaaa aagtgtctgt tttgtgaagt ccgtcagggg
     3901 ggcggagcct atggaaaaag cgccagcggc gcggcctttt gtcctggctt tgcctttttg
     3961 ctcacatgtt ctttccggcc ttatcccctg attctgtgga taactgtgtt accgtttttg
     4021 tgtgagtcag taccgctcgc cgcagccgaa cgaccgagcg tagcgagtca gtgagcgagg
     4081 aagcggaaga gcgccggaag ctacattttc tccttacgca tctgtgcggc atttcacacc
     4141 cggcatggtg cacttttcat acaatccgca ctgatgccgc ataagtaagc cagtatacac
     4201 tccgctatcg ctacgtgact gggtcatggc tgcgccccga cacccgctaa aacctgctga
     4261 cgcgccctga cgggcttgtc tgctcccggc atccgctcac aggccagctg tgaccgtctc
     4321 cgggagctgc atgtgtcaga ggttttcacc gtcatccccg aagcgtgcga ggcagctgcg
     4381 gtaaagctcg tcagcgtggt cgtgaagcgc ttcgcagatg tcagcctggt cgtcggcgtc
     4441 cagttcattc agtttttcca gcagggtcag cgtctggctt ctgatgaagc gggccatgtt
     4501 aagggcggtt ttttcctgtt tagtcacagt tctgtttctc catgtgtggg gagtctgtcg
     4561 gaggttttta atgataccgg tgaaacgcga aaggatgctc acgatacggg tcacggatga
     4621 ggaacatgcg cggctgctgg cacgttgtga gggaaaacaa cttgcgtcat ggatgcgtaa
     4681 ggtctgcctg ggggcaccgc catcgaaaac gtcaggtctt ccgacactgg caccgccgct
     4741 gttgcgccag ttcgcttcgg tcggcaataa cctgaatcag atagcccgga agataaacag
     4801 cggacagtgg tcggggcatg accgggttca tgtggtggct gcactgatgg ccatcggacg
     4861 tgaactgagt gagctgaggg atgaggtccg taaacaggga gaacgggatg atagttaagt
     4921 ttcatgccag gggaaaaggc ggtggcagtg gtccggttga ttacctgctg ggccgggagc
     4981 gtaaccggga aggggcgaga gttctgcggg gtgctcccga agaggtgcgg gaactcatcg
     5041 atgccacgcc gtttgcgaaa aaatacacct cgggggttct gtcttttgca gagcagaccc
     5101 tgccaccggg agagcgtgaa agggtgatgg agagctttga gcgggtactg atgcccggtc
     5161 ttgaaaaaaa tcagtacagc atcctgtggg tggagcacca ggacaagggg cgtcttgagc
     5221 tgaattttgt catcccgaat atggagctgg cgagcggaaa acggctccag ccctattacg
     5281 accgagcgga ccgtccgcga atcaatgcct ggcagacact ggtgaatcac cattacgggc
     5341 tgcacgaccc gaacgcaccg gagaacaggc ggacacttgt caccccgaat aatctgccga
     5401 aagcgaaaca ggaggccgca gaagcgatta cgaggggact ggaggctctt taccatgccg
     5461 gagcgctaaa aacgcgtcag gatgtcactg aggcgcttac agcggcaggt tttgaggttg
     5521 tgaggacaac caggagcagt atcagtatcg ccgacccgga gggcgggcgt aatctcaggc
     5581 tgaaaggggc gctgtatgag caatctttta caaatgggga cagacttcga gaagaaactg
     5641 aaagagcgtg ccgtctctac agagaacata ctgaacagcg agttcaggaa gctcgaagcg
     5701 tctgtagaca gggaactgaa cttaaacggg cagaaaatca gagacgctat cagcgcacac
     5761 acagcagcgg tgaaagaaca actggagacg ctgaacagtg ccgtgaacgc gcagttcagc
     5821 gccacagaga acgaactggc ccggcggcag gaagagctgc tctggaagct ggtcaaaggg
     5881 cggatactgt acccgtcgct gacggcgctt tgcgtcacgg gcgggatttt tctggcgtca
     5941 tgggggctga ttcagtggca ggaaagccgg attgcggcga acatcctggc tatcagggac
     6001 caggaagaga cgctggcgaa actccgggaa aaaacatggg gtgtgacgta tcacgagggc
     6061 aggaacggga aatttctggt attgccgtcc ggggtgaagg gggaaaacaa ctggacggtg
     6121 gagaagaaga acgcagtaag actggtcagg gagtaagtga gtatgacaga gctggaaatg
     6181 cacttactga acgccttaga gcaattgcag caggactata cgcagcggct gaaagactgg
     6241 gagagcgcct tcacggattt gcagcatatg ttcgagctga cacgacagga gaacgggcaa
     6301 ctgagggaac agtgcgacga cttgagtcag caggtgcaga gattagtcga gcaggtggac
     6361 cacttgagtc ggttatttat cacgaacagc agataaggga tgaacaggaa aggcaggcac
     6421 gcctggaacg ggagcgtgcg cggtcctggc atgaagagca ggaacgggaa gcacgggtat
     6481 ggcgtggccc gtcaataggg atatgacggt gagttgttcc gggaggttgc cagatggtac
     6541 cggaacgcgt taaaaacgca tccgggcgcg attctggcgt gtcgtttttg ttgctgtgtt
     6601 ttgcctcttt gccagatcgc gctcattcct cagcctcatc ccgcgatgtc tgcgtatgtc
     6661 atcaactgaa aagatgg
//
LOCUS       DAJVUP010000198         6619 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.198, whole genome shotgun sequence.
ACCESSION   DAJVUP010000198 DAJVUP010000000
VERSION     DAJVUP010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6619
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.198"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..350
                     /locus_tag="OQQ75_003819"
     CDS             <1..350
                     /locus_tag="OQQ75_003819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417590.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977978.1"
                     /translation="ALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDNYIIQTLDVG
                     TFAPFGEQCTCSAVNKKELECIKETISKYCAKFTQKEAILTAPTHFNKTCITSDCWQI
                     LFFSPDHFNNDFY"
     gene            372..1304
                     /locus_tag="OQQ75_003820"
     CDS             372..1304
                     /locus_tag="OQQ75_003820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005056257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977979.1"
                     /translation="MFPVSSIGNDISSDLVRRKMNDLPEIPIENNLEALAPGIEKLKQ
                     TSIQMVTLLNALQPGGKCIITGDFQKELAYLQNVILYNDSFLRLDFLGYNAQIIQRSD
                     NTCELTINEPLKNQEISTGNINANCPLKDIYNEIRRLNATFSCGTGDIVDLSSLDLRN
                     VDLDYYDFTDKHMANTILNPFKLDSTNFTNANMFQVNFVSSTQNATISWDYLLKITPV
                     LISISDMYSEEKIKFVESCLNELGDITEEQLKIMRFAIIKSIPRATLTDKLENELTKE
                     IYKSSSKINNCLNRIKLPEMKEFSSKKKHMITSI"
     gene            complement(1939..2315)
                     /gene="rnpB"
                     /locus_tag="OQQ75_003821"
     ncRNA           complement(1939..2315)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="OQQ75_003821"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(2348..3493)
                     /gene="garK"
                     /locus_tag="OQQ75_003822"
     CDS             complement(2348..3493)
                     /gene="garK"
                     /locus_tag="OQQ75_003822"
                     /EC_number="2.7.1.165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 2-kinase"
                     /protein_id="HCS1977980.1"
                     /translation="MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG
                     GEGTVEAMIAATQVSERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAE
                     KRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNE
                     IGFGGGSLNTLNDIDISGLDPRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAM
                     IVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTAL
                     NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVH
                     QHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG"
     gene            complement(3590..4480)
                     /gene="garR"
                     /locus_tag="OQQ75_003823"
     CDS             complement(3590..4480)
                     /gene="garR"
                     /locus_tag="OQQ75_003823"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HCS1977981.1"
                     /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAA
                     GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA
                     SREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV
                     HTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD
                     AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGT
                     ADHSALACYYEKLAKVEVTR"
     gene            complement(4510..5280)
                     /gene="garL"
                     /locus_tag="OQQ75_003824"
     CDS             complement(4510..5280)
                     /gene="garL"
                     /locus_tag="OQQ75_003824"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HCS1977982.1"
                     /translation="MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWL
                     VLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVET
                     KEEAEQAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDN
                     VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAP
                     VEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK"
     gene            complement(5296..6594)
                     /gene="garP"
                     /locus_tag="OQQ75_003825"
     CDS             complement(5296..6594)
                     /gene="garP"
                     /locus_tag="OQQ75_003825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GarP"
                     /protein_id="HCS1977983.1"
                     /translation="MHTRYLILLIIFIVTAVNYADCATLSIAGTEVAKELQLSTVSMG
                     YIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGIS
                     MFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLT
                     FAWGWEHVFTVMGVIGFVLTALWIKLIYNPTDHPRMSAEELKFISENGAVVDMDHKKP
                     GSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKV
                     GLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNN
                     TTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGY
                     LVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK"
BASE COUNT         1811 a         1724 c         1443 g         1641 t
ORIGIN      
        1 ctgcattgaa tttctatcaa ggcgatgttc cttctgtcat gatccgaatc caaccggaaa
       61 atatgagtcc attcatcata gatatttcta caggagaaca tgataattat atcatacaaa
      121 cattagatgt aggcactttt gcaccttttg gtgaacaatg tacttgctca gccgtcaata
      181 aaaaagagct ggaatgtatt aaggagacga tttctaagta ttgcgcaaag ttcacccaaa
      241 aagaagccat cttaacagcc cctacgcact ttaataaaac ctgcattact tcagattgtt
      301 ggcaaattct ctttttttca cccgatcatt ttaataatga tttttattga ttatttataa
      361 aggataaaat aatgttccct gtttcatcaa ttggtaatga tattagtagt gatttagtcc
      421 gtcgaaaaat gaatgacctt cctgaaatcc ccatagaaaa taatctcgaa gcactagcac
      481 caggtataga aaaactaaaa cagacctcta ttcaaatggt cactttactt aacgcgttac
      541 aaccaggtgg aaaatgtatt atcactggtg attttcaaaa agaattagcg tacttacaaa
      601 atgtaattct ttataatgac tcgtttcttc gtctggattt tttaggttat aacgcccaaa
      661 ttattcaacg atcggacaat acctgcgaac ttaccattaa tgaaccgtta aaaaaccagg
      721 aaatatctac aggcaatatc aatgctaatt gtccattaaa agatatttac aatgaaatca
      781 ggaggttgaa cgcaaccttt agttgtggga ctggagatat agttgatcta tcctctctgg
      841 acttacgtaa tgtcgattta gattattatg atttcacaga taaacatatg gctaatacta
      901 ttctaaatcc ttttaaattg gattcaacaa attttactaa tgccaacatg tttcaggtta
      961 attttgttag ttcaacacaa aacgccacaa tctcctggga ttatttacta aaaataacgc
     1021 ctgttttaat aagtattagc gatatgtatt ctgaagaaaa aatcaagttt gtcgaaagtt
     1081 gtttaaatga gcttggagac attaccgaag aacaattaaa aattatgaga tttgcaatta
     1141 taaaatctat accaagggca actcttacag ataaattaga aaatgaatta acaaaagaaa
     1201 tatataaaag ctcatcgaaa atcaacaatt gcttgaacag aattaaatta ccagagatga
     1261 aagaattctc atcaaaaaaa aaacatatga ttacatcgat ataatcattg aagattatga
     1321 aaatatcaaa gaaaatgctt atctggtcgt cccccaaatt aattatacta tggatttaaa
     1381 catagaagac tccagctcag aagagttaat accctcgaga aagacgaaaa ttcttcggac
     1441 aatggctttg aagtcgaaga atataacgca tatgaagcat ataactcaga gaatctatat
     1501 tttaccagag aggaatatac gtatgattac gacctttcaa atgcaatata gacttaataa
     1561 cttcttacaa aatctataat taataccgta gatattcatt catcttaccc tgtgcaccaa
     1621 aagcaaaaac tcactgacgc gggtttgaaa ctgatggcaa ccgcaaaaat gcctgatgcg
     1681 ctacgcttat caggcctacg ccatctctgc aatatattga atttgcgtgc ttttgtaggc
     1741 aggataaggc gttcacgccg catccggcat gaataaagcg cactcaacaa tctgaaaccc
     1801 gccggaacgg tttattacgt acatcaggtg aaactgaccg ataagccgct ttcttttggg
     1861 tatagtgtcg tggacagtca ttcatctttc tgcccctcca aaagcaaaaa cccgccgaag
     1921 cgggttttta cgtaaatcag gtgaaactga ccgataagcc gggttctgtc gtggacagtc
     1981 attcatctag gccagcaatc gctcactggc tcaagcagcc tacccgggtt cagtacgggc
     2041 cgtaccttat gaacccctat ttggccttgc tccgggtgga gtttaccgtg ccacggactg
     2101 ttaccagccg cgcggtgcgc tcttaccgca ccctttcacc cttacctgat cccgcttgcg
     2161 cgggccatcg gcggtttgct ctctgttgca ctggtcgtgg gtttcccccc caggcgttac
     2221 ctggcaccct gccctatgga gcccggactt tcctcccctc cgcccgtctc ccccgaagag
     2281 gacgacgacg aagcggcgac tgtctggtca gcttcggcgc gcagtataga gggtttgcgc
     2341 gcccttgtca ccccgcgttg cgcattccaa tcgccagtgt cgcggcgata ttacgtgaag
     2401 cacggcagat attgtcataa gccccgcgga atgcttcgtc caacgtacct atgctggtca
     2461 atacgctgaa gaccgcatca atgccatgct gatgtacaac gccaacatca tcggtcaggc
     2521 tacccgcaat gccaatcacc ggtttatggt acttcttcgc cacgtttgcg acaccaatcg
     2581 gtaccttgcc gtgaatactc tggctgtcaa tacgcccttc accggtgatc accagcgtac
     2641 aatcgtgaat atgttcttcc agattcagcg ccgtagtgac gatttcaata ccacttttca
     2701 gttccgcacc aagaaacgcc atcagcgccg cgcccatacc gcccgcagct cctgcgccgg
     2761 ggacatcttt cacatcaaca tgcagcgctt ttttaatgac ctcggcatag tgagagaggt
     2821 tattgtccag ctcaacaatc atcgcttcac tggctccctt ttgtgggcca aagatgcgcg
     2881 atgcgccgtt atcgcccacc agcggattgg tgacatcaca agcgacgcga atgacgcaat
     2941 cttttaagcg cggatcgagg ccggaaatat caatatcatt cagagtatta agactaccgc
     3001 cgccaaaacc aatttcattg ccgttggcgt cgcataattt cgcccccagc gcctgtacca
     3061 tgcctgcgcc gccatcattt gtagcgctgc cgccaatgcc gataataatg tttgtcgcac
     3121 cgctctccag cgcctgcagg attaactcgc ctgtgccgcg tgaagtggtc acgagtggat
     3181 cgcgtttttc cgcaggtacc agctccagcc cactggccgc cgccatttca ataaacgcgg
     3241 ttttgccatc gccggagatc ccccaactgg cattcacttt ctcgcccaac ggccctgtaa
     3301 cccaggcgtg acgttcggaa acctgggtgg ctgcaatcat cgcttccacc gttccttcgc
     3361 caccgtcggc aaccggaaca gaaacgtact gtgcatcagg aaaaatttcc cgaaatcctt
     3421 tttctatcgc ctgcgcaacc tcgctggcag ataaactttc tttataagag tctggggcga
     3481 ttacgatttt catacctatg cctgttacca catgacgccg gagggcgttt ctcttattcg
     3541 gcgtggattc caggcccgga ttgcaatacg ccatccgggc acgacgtcat taacgagtaa
     3601 cttcgacttt cgccagtttt tcgtagtagc acgccagagc gctatgatcc gccgttccta
     3661 aaccatctgc acgcagtgcc tgcatcatct ccataaccgc agctgtgagc ggcagttgcg
     3721 cgccgacgcc gtgagaagta tccagcgcat tcgccagatc cttaatatgc agatcaatgc
     3781 ggaagcccgg cttgaagttg cggtccatca ccatcggcgc tttggcatcc agcacggtac
     3841 tgcccgccag cccaccgcga attgcctgat aaaccaggtc cgggttaacg cccgctttag
     3901 ttgccagcgt taacgcttct gacatcgcag caatattcag cgccacaatg acctgatttg
     3961 ccagtttggt gacgttacct gcaccgattt ccccggtatg caccacggaa cccgccatcg
     4021 ctttcatcaa atcatagtat ttgtcgaaaa tagccttgtc gccgcccacc atcactgaca
     4081 gcgtaccgtc gatggctttc ggttcaccgc cgctcaccgg agcatccagc atatcaatgc
     4141 ctttcgcttt cagcgcttcg ctgatttcac ggcttgccag cggtgcgata gaactcatat
     4201 cgatcaatac cgtacctggc ttcgcgcctt caataatgcc attctcaccc agcgccacct
     4261 ctttcacatg aggggagttt ggcagcatgg ttatgatgac gtcgcactgt tcagcgatcg
     4321 ctttagccgt agacgctgtt tctgcacctg cagcaatcac gtcagcaata gcttctgggt
     4381 tacggtcagc aaccaccagc gagtaacctg ctttcagaag gtttttactc attggtttac
     4441 ccataatccc caggccaata aaaccaactt tcatagtcat atcaatcatc tctcttgttg
     4501 cggtggtggt tattttttaa aggtatcagc cagtttctga gtggcagagc ggaagacgcc
     4561 aagatcgctg ccgacagcca caaacgtcgc gccccattcc agataacgac gcgcatcggc
     4621 ttcgaccggc gcgagaatac cgctgggttt gccgtgcgca ctggcacggt taaaaatatg
     4681 ctgaattgct ttttgtacat ccggatgcga ggcattgccg agatggccca atgccgcagc
     4741 cagatcgctg gggccgacga agataccgtc tacaccttcg gtagcggcaa tagcatcgac
     4801 gttatctacg ccctgctgac tttctatctg gaccagaata gtgatgttct tgttcgactg
     4861 agcgaaataa tccgccacgg tgccaaacat attggcgcgg tgagaaacgg agacgccgcg
     4921 aatgccttcc ggcgggtaac gagttgatgc caccgcctgc tctgcttcct cttttgtttc
     4981 tacaaaagga atcaggaaat tatagaaacc gatatccaga agacgcttaa taattaccgg
     5041 ctcgttggtc ggcactcgca ctactggcgc gctggcgctg cctttcaggg ccattaactg
     5101 cggaataaac gtggaaatat cgtttggcgc atgttcgcca tccagcacca gccagtcaaa
     5161 cccagccaaa ccaagaactt cagtgctaat cgggttagag agtgctgacc agcaaccaat
     5221 ttgtacctgt ttcgcagcca gtgcggcttt gaatttattc gggaaaacat cgttattcat
     5281 cgcttatacc tttgcttatt tctgcaattc catacgttta atgtcgccaa ctacgaagag
     5341 gtagcagacc atcgccatca gcgctgaaca tcccacgaaa accagtgctg cattgaagga
     5401 gtgcagttca cttaccaggt agccaatcac cagtggagtg acaatggagg caacattgcc
     5461 aaagacgtta aagacgccgc cacagaggcc aacaatctct ttcggcgcgg tgtcagaaat
     5521 caccggccag cccagagcac caaatccttt gccaaaaaaa gccagcgcca tcagcatgac
     5581 caccagcgtg gtgttgttgg tgtagttaca taagatgatg gtggaagcca gcaacattcc
     5641 cagcacaatc ggtagcttac gtgccagggt cagggataaa ccgcgtttga tcagataatc
     5701 cgagaagaca cctcccagca cgccgcccgc aaaaccacac agtgccggaa tcgaggcgac
     5761 cagacccact ttcagaatcg acatgccttt ttcctgcacc agataaatcg ggaaccaggt
     5821 gaggaagaac caggtgatgg tgttgataaa atattgtccg aaaaatacgc ccaacatcat
     5881 gcggttagag agcaattgct tgatgtaatg cagtttggga ccgcttgctg ccgcgctgcc
     5941 cggctttttg tggtccatat cgaccaccgc gccattttca gagataaact tcagctcttc
     6001 cgcagacata cgtgggtgat ctgtcgggtt ataaatcaac ttgatccaca gcgccgtcag
     6061 cacaaaacca atcaccccca taacggtgaa gacgtgctcc cagccccagg cgaaagtcag
     6121 ccagccaagc agaggcgaaa agagcgccag cgagaaatat tgcgccgagt taaagatggc
     6181 ggaggcagta ccacgttctt tcgtcgggaa ccaggcggcg acaatacggg cgttcgccgg
     6241 gaatgatggc gcttccgaga agccgagcat aaagcgcata aagaacatag agatccctgc
     6301 ccaggccagc gggaacatat caacaaagcc ttgcaggaag gtgaatagcg accagaaaaa
     6361 gaggctgtag gtgtaaactt ttttcgagcc aaacttatca agcagccagc cgccgggaat
     6421 ttgcatcagc aggtaggccc agccaaaagc ggagaagatg taacccatcg aaaccgtact
     6481 taactgcaac tcttttgcca cttcggtacc agcaatagac agcgttgcac aatcggcgta
     6541 gttaacggcg gtaacaataa aaataatcag taatattaaa tagcgggtat gcacgccttt
     6601 cttttttacg tcaacggtg
//
LOCUS       DAJVUP010000199         6477 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.199, whole genome shotgun sequence.
ACCESSION   DAJVUP010000199 DAJVUP010000000
VERSION     DAJVUP010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6477
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.199"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            177..1547
                     /locus_tag="OQQ75_003826"
                     /pseudo
     CDS             177..1547
                     /locus_tag="OQQ75_003826"
                     /inference="COORDINATES: protein motif:HMM:NF015188.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            1707..2540
                     /locus_tag="OQQ75_003827"
                     /pseudo
     CDS             1707..2540
                     /locus_tag="OQQ75_003827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001553214.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(2668..3390)
                     /gene="ubiG"
                     /locus_tag="OQQ75_003828"
     CDS             complement(2668..3390)
                     /gene="ubiG"
                     /locus_tag="OQQ75_003828"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HCS1977984.1"
                     /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR
                     LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG
                     IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPSGDVFFSTL
                     NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP
                     LTNTFKLGPGVDVNYMLHTQNK"
     gene            3537..6164
                     /gene="gyrA"
                     /locus_tag="OQQ75_003829"
     CDS             3537..6164
                     /gene="gyrA"
                     /locus_tag="OQQ75_003829"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HCS1977985.1"
                     /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP
                     TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK
                     IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM
                     VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP
                     IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL
                     TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL
                     VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG
                     KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP
                     LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL
                     IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG
                     DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI
                     TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA
                     EGDDEIAPEVDVDDEPEEE"
     gene            6313..>6477
                     /locus_tag="OQQ75_003830"
     CDS             6313..>6477
                     /locus_tag="OQQ75_003830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1977986.1"
                     /translation="MSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP
                     LVMHNNLQIDL"
BASE COUNT         1547 a         1606 c         1869 g         1455 t
ORIGIN      
        1 gctccaccca acaaaccttt gtgcactcat tgacgggctt tcagaatggc actttaaata
       61 tcgatgctgg tggcaatgtt actgttaatc aaggtagttt tgctggcacc atcgaaggtg
      121 ctggtcagct caccattgcg caaaacggca gctacgtgct gtcgggggcg cagtcgatgg
      181 cgctaaccgg cgatatagtc gttgatgatg gtgcggtgct ttcgctggaa ggcgacgcgg
      241 cagatctcgc cgctctccag gacgatccgc agtcgatcgt gttaaacggc ggtgtgctcg
      301 atctctctga tttctccacc tggcagagcg gcacatcata caatgatggc cttgaagtca
      361 gtggcagcag cggaacggtt atcggcagtc aggatgtggt agatcttgca ggtggcgaca
      421 atttgcatat ccgcggcgac gggaaagatg gcgtctacgt ggtggtcgat gcgagcgacg
      481 ggcaggtaag tctggcaaac aataatagtt atttgggcac aacacaaatc gcctccggta
      541 cgctgatggt gagcgacaac tcgcagcttg gagataccca ctataaccgc caggttatct
      601 ttaccgataa gcaacaagaa agcgtgatgg agattactgc caatgtcgat actcgctcta
      661 cgacgactga gcatgggcgt gatattgaaa tgcgcgccga cggtgaagtg gcagttgatg
      721 cgggggtaga cacgcagtgg ggcgcactga tggctgacag cagcgggcag catcaggatg
      781 agggtagcac atttactaaa acgggggcgg gtacgctgga gctgaccgcc agcggtacaa
      841 cgcagtcggc agtacgtgtc gaagaaggca ccctgaaagg cgatgttgcg gatatctttc
      901 cttatgcttc gtcactgtgg gtcggtgatg gggcgacgtt cgttactggc gcggatcagg
      961 atattcagtc tatcgatgct acttccagcg gcactatcga tatcagcgat ggtacggttt
     1021 tgcgtctgac cgggcaggat acttccgtcg cccttaatgc ctcattgttt aacggcgatg
     1081 ggacgctggt gaatgctacc gatggcgtga cgttgacagg tgagcttaat accaaccttg
     1141 aaactgacag cctgacctat cttgccgacg tgacggttaa tggtgatctg accaatacgt
     1201 ccggtgcggt tagcctgcaa aatggcgtcg ctggcgatac gctaacggta aacggtgatt
     1261 atactggcgg cggtacgcta ctgttcgaca gcgaattaaa cggcgatgac tcggtaagcg
     1321 atcaattggt gatgaacggt aatactgctg gcaacacaac tgtggtggtt aactccatta
     1381 cagggattgg tgagccgaca tcgacaggca ttaaagtggt tgatttcgca gctgatccca
     1441 cgcagtttca aaacaatgca cagttcagtc tggctggcag tggctacgtc aacatgggag
     1501 cgtatgacta cacgctagtg gaagataaca acgactggta tctgcgatcg caagaagtaa
     1561 cgccgccatc gccacctgat ccagacccgg acccaacacc cgatcctgac ccaacacccg
     1621 atccaatccc cgcttaccag ccggtgctga atgccaaagt tggcggttat ctcaataacc
     1681 tgcgggcggc aaatcaggcg tttatgatgg agcgacgcga tcacgctggt ggcgatggtc
     1741 agacgctgaa tttacgtgtt atcggcggac gttatcatta cacggcggca gggcaactgg
     1801 ctcagcagga agacacttct acggtgcagc ttagcggcgg cttgtttagc gggcgctggg
     1861 gcacggatgg cgagtggatg cttggggcgg ttggtggcta cagtgataat cagggcgaca
     1921 gccgctcgaa tatgaccgga actcgcgccg ataaccagaa ccacggttat gccgttgggc
     1981 tgacctcaag ctggtatcag cacggtaatt agaagcaggg ggcctggctg gatagctggc
     2041 tgcaatacgc gtggtttaac aatgatgttt ccgaacatga agatggcgtg gatcgttacc
     2101 attcgtcggg gattatcgcc tcgctggaag ccgggtatca gtggttaccg gggcgtggtg
     2161 tggtgattga accgcaggcg caggtgattt atcaggacgt gcagcaggat gattttaccg
     2221 ccgctaacca tgcgcgcgtg tcacaatcgc agggggatga tattcagacg cggctgggtt
     2281 tacacagcga atggcgtacc gcggttggtg tcacaccaac attagatctg aattattatc
     2341 acgatcccca tgcgacggaa attgaagaag atggcagcac tatcagtgac gatgcggtga
     2401 agcgacgggg tgaaataaaa gtgggagtca cgggcaatat cagtcagcga gtgtccctgc
     2461 gcggcagcgt ggcgtggcag aaagggagtg atgattttgc ccagacggca gggtttttgt
     2521 cgatgacggt gaaatggtaa tcactgtcta gtcggcacgg ttgccggatg cggcgtaaac
     2581 gccttatccg gcctacgggg agcatttgta ggcctgataa gacgcggcaa gcgtcgcatc
     2641 aggcattggc tcggccaaac aacaacctca cttattctgc gtgtgcagca tatagttcac
     2701 atccacgccg gggccgagtt taaaagtatt agtgagcggg ttgtaatgta gcccagttat
     2761 atgtcgctct ttaaggcttg tctgatctac ccagccaagc agttctgccg gtttaataaa
     2821 cttcttcaca tcatgcgtgc ctttgggcac catgcgcaaa atatattccg cgccaaccac
     2881 cgccatcagc catgacttgc cgttgcggtt aagcgtcgag aaaaagacat cgccgcttgg
     2941 tttcaccagt tgcgcacagg ctctgaccac tgactgcgga tcggggacgt gctccagcat
     3001 ctccatgcag gtcaccacat catactgccc ggcatgtttt gccgcgtgct cttccacggt
     3061 ttcctgcaca taatccacct gaatgccgct ttccagcgcg tgcagttttg ccacctgcaa
     3121 tggctcaaag cccatatcca gaccggtcac cgtcgcgcct tcgcgcgcca tactctcggc
     3181 cagaatgccg ccgccacaac cgacatcgag cacctttttg ccaaataaac cgccagcacg
     3241 ctcggcaata tagcccagac gcagcgggtt aatgcggtgc aacggtttga actcaccttc
     3301 aagatcccac cagcgggagg cgacggcttc aaatttagcg atctcttcgt ggtctacgtt
     3361 atggttttcc ggcgattttt cggcattcat tggcacttct actccgtaat tggcaagaca
     3421 aacgagtata tcaggcattg gatgtgaata aagcgtatag gtttacctca aactgcgcgg
     3481 ctgtgttata atttgcgacc tttgaatccg ggatacagta gagggatagc ggttagatga
     3541 gcgaccttgc gagagaaatt acaccggtca acattgagga agagctgaag agctcctatc
     3601 tagattatgc gatgtcggtc attgttggcc gtgcgctgcc agatgtccga gatggcctga
     3661 agccggtaca ccgtcgcgta ctttacgcca tgaacgtact aggcaatgac tggaacaaag
     3721 cctataaaaa atctgcccgt gtcgttggtg acgtaatcgg taaataccat ccccatggtg
     3781 actcggcggt ttatgacacg atcgtccgta tggcgcagcc attctcgctg cgttacatgc
     3841 tggtagacgg tcagggtaac ttcggttcca tcgacggcga ctctgcggcg gcaatgcgtt
     3901 atacggaaat ccgtctggcg aaaattgccc atgaactgat ggccgatctc gaaaaagaga
     3961 cggtcgattt cgttgataac tatgacggca cggaaaaaat tcccgacgtc atgccaacca
     4021 aaattcctaa cctgctggtg aacggttctt ccggtatcgc cgtaggtatg gcaaccaaca
     4081 tcccgccgca caacctgacg gaagtcatca acggttgtct ggcgtatatc gatgatgaag
     4141 acatcagcat tgaagggctg atggaacaca tcccggggcc ggacttcccg acggcggcaa
     4201 tcattaacgg tcgtcgcggt attgaagaag cttaccgtac cggtcgcggc aaggtgtata
     4261 tccgcgctcg cgcagaagtg gaagttgacg ccaaaaccgg tcgtgaaacc attatcgtcc
     4321 acgaaattcc gtatcaggta aacaaagcgc gcctgatcga gaagattgcg gaactggtaa
     4381 aagaaaaacg cgtggaaggc atcagcgcgc tgcgtgacga gtctgacaaa gacggtatgc
     4441 gcatcgtgat tgaagtgaaa cgcgatgcgg tcggtgaagt tgtgctcaac aacctctact
     4501 cccagaccca gttgcaggtt tctttcggta tcaacatggt ggcattgcac catggtcagc
     4561 cgaagatcat gaacctgaaa gacatcatcg cggcgtttgt tcgtcaccgc cgtgaagtgg
     4621 tgacccgtcg tactattttc gaactgcgta aagctcgcga tcgtgctcat atccttgaag
     4681 cattagccgt ggcgctggcg aacatcgacc cgatcatcga actgatccgt catgcgccga
     4741 cgcctgcaga agcgaaaact gcgctggttg ctaatccgtg gcagctgggc aacgttgccg
     4801 cgatgctcga acgtgctggc gacgatgctg cgcgtccgga atggctggag ccagagttcg
     4861 gcgtgcgtga tggtctgtac tacctgaccg aacagcaagc tcaggcgatt ctggatctgc
     4921 gtttgcagaa actgaccggc cttgagcacg aaaaactgct cgacgaatac aaagagctgc
     4981 tggatcagat cgcggaactg ttgcgtattc ttggtagcgc cgatcgtttg atggaagtga
     5041 tccgtgaaga gctggagctg gttcgtgaac agttcggtga caaacgtcgt actgaaatca
     5101 ccgccaacag cgcagacatc aacctggaag atctgatcac tcaggaagat gtggtagtga
     5161 cgctctctca ccagggctac gttaagtatc agccgctttc tgaatacgaa gcgcagcgtc
     5221 gtggcgggaa aggtaaatct gccgcacgta ttaaagaaga agactttatc gaccgactgc
     5281 tggtggcgaa cactcacgac catattctgt gcttctccag ccgtggtcgc gtctattcga
     5341 tgaaagttta tcagttgccg gaagccactc gtggcgcgcg cggtcgtccg atcgtcaacc
     5401 tgctgccgct ggagcaggac gaacgtatca ctgcgatcct gccagtgacc gagtttgaag
     5461 aaggcgtgaa agtcttcatg gcgaccgcta acggtaccgt gaagaaaact gtcctcaccg
     5521 agttcaaccg tctgcgtacc gccggtaaag tggcgatcaa actggttgac ggcgatgagc
     5581 tgatcggcgt tgacctgacc agcggcgaag acgaagtaat gctgttctcc gctgaaggta
     5641 aagtggtgcg ctttaaagag tcttctgtcc gtgcgatggg ctgcaacacc accggtgttc
     5701 gcggtattcg cttaggtgaa ggcgataaag tcgtctctct gatcgtgcct cgtggcgatg
     5761 gcgcaatcct caccgcaaca caaaacggtt acggtaaacg taccgcagtg gcggaatacc
     5821 caaccaagtc gcgtgcgacg aaaggggtta tctccatcaa ggttaccgaa cgtaacggtt
     5881 tagttgttgg cgcggtacag gtagatgact gcgaccagat catgatgatc accgatgccg
     5941 gtacgctggt acgtactcgc gtttcagaaa tcagcatcgt gggccgtaac acccagggcg
     6001 tgatcctcat ccgtactgcg gaagatgaaa acgtagtggg tctgcaacgt gttgctgaac
     6061 cggttgacga ggaagatctc gataccatcg acggcagtgc cgcggaaggg gacgatgaaa
     6121 tcgctccgga agtggacgtt gacgacgagc cagaagaaga ataattttac ttcttcatgc
     6181 caaaagggag ctatctccct tgtttgaatt gaaaagtcca ggctgcaaag tctgggcttt
     6241 tgtcgtatta gggcacggta aagtttggct gtgcccgtaa aaaatggctg gctatacaca
     6301 aggaatgtgg caatgagtgg tgaaaaaaag gcgaaaggct ggcggttcta tggtcttgta
     6361 ggttttggcg caatagtact gctttccgct ggcgtctggg cgttgcaata tgctggcagt
     6421 gggccagaaa aaacgttgtc gccgctggtg atgcacaaca atctgcaaat cgatctc
//
LOCUS       DAJVUP010000200         6390 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.200, whole genome shotgun sequence.
ACCESSION   DAJVUP010000200 DAJVUP010000000
VERSION     DAJVUP010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6390
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.200"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..206)
                     /locus_tag="OQQ75_003831"
     CDS             complement(<1..206)
                     /locus_tag="OQQ75_003831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311770.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="knotted carbamoyltransferase YgeW"
                     /protein_id="HCS1977987.1"
                     /translation="MKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAAL
                     KALRAENISTKVFNSGLGISVFRD"
     gene            685..2163
                     /locus_tag="OQQ75_003832"
     CDS             685..2163
                     /locus_tag="OQQ75_003832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HCS1977988.1"
                     /translation="MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAG
                     TGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTP
                     VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK
                     IFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH
                     GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC
                     RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE
                     QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR
                     EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED
                     IEHWCITFYICIPVVWDRFILALLPMSSKYCVSIVGPETCAS"
     gene            2046..2462
                     /locus_tag="OQQ75_003833"
     CDS             2046..2462
                     /locus_tag="OQQ75_003833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004993937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial regulatory, Fis family protein"
                     /protein_id="HCS1977989.1"
                     /translation="MHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME
                     YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI
                     REALSRHNSKKQVADELGIGIATLYRKIKKYELLNT"
     gene            complement(2502..2981)
                     /gene="xdhC"
                     /locus_tag="OQQ75_003834"
     CDS             complement(2502..2981)
                     /gene="xdhC"
                     /locus_tag="OQQ75_003834"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase iron sulfur-binding
                     subunit XdhC"
                     /protein_id="HCS1977990.1"
                     /translation="MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGC
                     CVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQ
                     CGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK"
     gene            complement(2978..3856)
                     /gene="xdhB"
                     /locus_tag="OQQ75_003835"
     CDS             complement(2978..3856)
                     /gene="xdhB"
                     /locus_tag="OQQ75_003835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase FAD-binding subunit XdhB"
                     /protein_id="HCS1977991.1"
                     /translation="MFDFASYHRAATLADAINLLANNPQAKLLAGGTDVLIQLHHHND
                     RYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAAMSIAG
                     LQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSL
                     EHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFG
                     VAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMT
                     KKVISEAVAAAGGKLQ"
     gene            complement(3867..6164)
                     /gene="xdhA"
                     /locus_tag="OQQ75_003836"
     CDS             complement(3867..6164)
                     /gene="xdhA"
                     /locus_tag="OQQ75_003836"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdenum-binding
                     subunit XdhA"
                     /protein_id="HCS1977992.1"
                     /translation="MEAREATATGESCMRVDAIAKVTGRARYTDDYVMAGMCYAKYVR
                     SPIAHGYAVSINDEQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALL
                     TRHVRHHGDAIAIVVARDELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGN
                     LLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSST
                     QIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKV
                     SLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGN
                     KVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEI
                     RLRNAAREGDANPLTGKRIYSAGLPECLEKGRKIFEWEKRRAECQNQQGNLRRGVGVA
                     CFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVS
                     DVRVISTQDTDVTPFDPGTFASRQSYVAAPALRSAALLLKEKIIAHAAVMLHQSAMNL
                     TLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTTNPPAFGCTFVD
                     LTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGV
                     VRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMA
                     TGVAINTLPLTPKRLYEEFHLAGLI"
BASE COUNT         1594 a         1511 c         1615 g         1670 t
ORIGIN      
        1 ttgtcgcgga atacggaaat acctaatcca ctattaaaga ctttggttga gatgttttca
       61 gcacgcagtg cttttaatgc tgcggcaacg tccagtactt gtttcagttc atctggcgtc
      121 tgttcccacg ttaacaaaaa atctttctcg tgaaggtgag aggtcagcga attgatatcc
      181 ttaatcagct cattaacagt tttcatcata aagtcccggt agtggaatga caggcaaagt
      241 ggtttatttc actgtgactt gccaaagtga ttggtgtttt cacagctata cctgggacta
      301 acaataagtg tgccagaatt atccgcgcgg ctgcaaaaga ctaatttgac ggataatgtg
      361 tggggttgat cacaaattga tgccagcttc tggttgtttg taaaatacga aaacgtttgg
      421 ctttttttat cgcgttattt atttgctgct aagtatcaga aataagataa aggggcaggc
      481 tatctctctt cagtttgata aactcaccgc cgtaattctc atattgatat agaaatgtga
      541 tatctcttcc ataatttcat tagaaaatga taaaaatctt atgtttttat caaagccaat
      601 ttcgcctgag ttaatatcat catgatctgt gaaccatcaa cgtcttcaat gatcgacttt
      661 taagtaagtc tggaaggtaa agctatggag cttgctacta cgcagtcagt attgatgcaa
      721 attcaaccga caattcagcg ttttgccaga atgcttgcca gcgttttgca gcttgaggtt
      781 gagatcgttg atgaaaactt gtgtcgcgtc gccggaacgg gcgcgtatgg gaagtttctt
      841 ggtcgccagt tgagcggcaa ctcacgcctg ctccgccacg tcctggaaac gaaaactgaa
      901 aaagttgtga cacagtctcg cttcgatccc ctttgcgaag gttgcgatag taaagaaaat
      961 tgccgtgaaa aagcatttct gggtacgcct gtcattttac aggatcgttg tgttggggtg
     1021 ataagtttga ttgccgttac ccacgagcaa caagagcata tcagtgataa tttacgcgaa
     1081 ttttctgatt atgttcgcca tatatccacc atttttgttt cgaaacttct ggaggatcag
     1141 gggccaggag ataacatcag taaaatattc gcgaccatga tcgataatat ggatcagggc
     1201 gtattagttg ttgatgatga aagtcgggtt cagtttgtta atcagactgc cttaaaaaca
     1261 cttggtgttg tacaaaataa tattattggg aaacctatcc gtttcagacc attaacattt
     1321 gagagtaatt ttactcatgg acatatgcag catattgttt cgtgggacga taaaagtgaa
     1381 ttaatcattg gtcaattgca taacattcag ggccgacaat tatttttaat ggcatttcac
     1441 caatcgcata ccagtttttc tgtagcaaat gcacctgatg aaccacatat tgaacaattg
     1501 gttggcgagt gccgtgttat gcggcaatta aaacgactca ttagccgtat tgcacccagc
     1561 ccatccagcg ttatggtggt tggtgaaagc ggcacgggta aagaagtcgt cgcccgagca
     1621 atccataagt tgagcggaag acggaataaa ccctttattg ctatcaactg tgccgcgatt
     1681 ccggagcagc ttctggaaag cgaactgttc ggttatgtta aaggcgcatt tactggcgct
     1741 tctgccaacg gtaaaacagg gttgattcag gcggcgaata cgggcacgct gtttctcgat
     1801 gaaataggtg atatgccatt aatgttgcag gctaaattac tgcgcgctat tgaggcgcgt
     1861 gaaattctgc cgattggtgc cagtagccca atacaagtcg acattcgcat catttctgca
     1921 actaatcaga atttggccca gttcattgcc gaaggtaaat tccgcgaaga tctcttctac
     1981 cgacttaatg ttatcccgat aactctgcca ccgctgcgtg aacgtcagga agatattgaa
     2041 cattggtgca ttacttttta catctgcata cccgtcgtct gggatcggtt tatcctggca
     2101 ttgctcccga tgtcgtcgaa atattgcgta agcatcgttg gcccggaaac ctgcgcgagt
     2161 taagcaattt gatggaatat ctggttaacg tagttccttc aggtgaagtt atcgacagca
     2221 cgctattgcc gccaaatctg ctgaataatg gcacaacgga gcaaagtgat gtaacagagg
     2281 tcagtgaggc gcacctgtca ctcgatgatg cgggcggcac ggcgctggag gagatggaaa
     2341 agcaaatgat ccgcgaggcg ctttcacgtc ataacagcaa gaagcaagtt gctgatgaac
     2401 tgggcatcgg cattgctacg ctctatcgca agattaagaa atatgagttg ttaaacacat
     2461 aacctcagtg aatccggcct gaattcaggc cggatatcct tttacttcgt tttctcgcaa
     2521 tccagaactg tatttacaat catctgatac cccgtgcagc gacaaagatt tcccgccagt
     2581 ccgcgacgaa tttccgtaat ggttaatggc ttctcgcgtg gtttcgccag cattgccgtg
     2641 gtagccataa tcaggccagg cgtacaaaac ccgcactgca ctgcgccgga tttcgcataa
     2701 gcctgctgaa catgagaaag ttttccgcct ttcgcttcac cttccagcgt gcggatctct
     2761 tttccttcag cccaggcggc aaggtataag caactgtcta ttgctgtgcc gtcgaccaac
     2821 accgtacagg caccacattc acccacgcag cacccttgtt tgacacttag cagtccttgt
     2881 tcgcggagta attccgagag cggcgtgcct ggtgcggcgt gaagctgaaa aggcatcccg
     2941 ttaatggtgc attcgatggt aattgtttcg ctgtgattca ttgcaatttt ccccccgccg
     3001 cggcgacggc ttcgctaatc acttttttgg tcatcgtctg gatgagatgc agacgaaact
     3061 ctttactggc ccgccatgaa gaacgcgggg cgacatcttg caggacagat tcgctgatag
     3121 cttccagcgt ttgcaggttt aatggcgcat tttgtgcagt ctgttcggca tgttggcagc
     3181 gaatcggcgt tggcgcggca acaccaaatg ccaggcgtaa ttcgctgaaa ttgccgttat
     3241 ccagtcggca atgtgcggcg cagccaatcg ttgaaatatc cattgcgtcg cgcatggcat
     3301 atttaaaatg cgcgctgccc gcgtgttctt tcggctgtgg cggaaaatga aaggcgacga
     3361 ggatttcgtc atgctcaaga gacactttgc ccggcccggt gtgaaagcca ttaatcggga
     3421 cgaaacgaac accgcgcggg gagtggatct ccagtttcgc gtcataaatt agcgttggcg
     3481 tggcagaatc tgcgctggtg gcaccgttgc aaatatttcc accgtaggta gcgacgttac
     3541 ggatctgcag tccagcaatg gacatggccg cagcacataa cgccgggaga tgacgttgag
     3601 ttataggatc ttctattagc tgggtaaatg tcgttgcaga gccgatacgt agcgagccat
     3661 cttccgccag cgtaattccc cgcagctccg ccagattatg aatatcaaca atatggcgat
     3721 aacggtcatt gtgatggtgg agctgaatca gtacgtcagt gccaccggcg agcagtttgg
     3781 cctgcgggtt gttagccagc aggttgatgg catcggcaag ggttgctgcg cgatggtaag
     3841 aagcaaaatc aaacatgatg ttatcctcaa atcaatcctg ccagatggaa ctcttcatat
     3901 aaccgttttg gcgtcagcgg cagtgtattg attgcaacac cggtagccat cttcaccgcg
     3961 ttacgaatag cagcggcaac aggaattatt ggtggctcac ccagtgactt atgtccgtat
     4021 gcggattgcg gctcattgat ttcgacgaac gcgctttcca gttgtggcag atccggcatg
     4081 gtcggcattt tgtaatccag cagattgggg ttacggacca cgccgctttt agcatcgatg
     4141 atcatctctt caaatagcgc ccagccaatg cccattccca ttccgccgtg tacctgacct
     4201 tctgccagca gtggattaag aatatgccct gaatcatgaa cgttgaggat gcggttgatg
     4261 gtgactttgc acagcgcaat atcgaccgtc agatcaacaa aggtacagcc aaacgccggt
     4321 gggttagtgg tggttttgat ggagctttca gcagagagct gcccgccgcg ttcagggtgg
     4381 tagaaagcgt ccatcgccaa atcttttaac gacattaacg gctcttccgg tcgttcaacc
     4441 agcacgatat ggccttttat cagggtcaga ttcatcgctg actgatgtag catgactgcg
     4501 gcgtgagcga tgattttctc ttttaataat agtgccgcac tgcgcagcgc aggcgcggca
     4561 acatagctct ggcgtgaggc aaatgtgccg ggatcgaacg gcgtaacgtc ggtatcttga
     4621 gttgaaataa cgcgaacgtc gctgaccgga acccccacgg tttctgccac catttgcgag
     4681 aagacggtgt cggcaccctg accgatttcc gtcgcgccgc tttgcacgtt gatggttcca
     4741 tcctgattca tcagaaggcg cgcgcctgct atttctacgc cgacaggcca ggtgttagag
     4801 gtgtagctaa aacaggcgac gccaacgccg cggcgcaaat tgccttgctg gttctggcat
     4861 tctgcacggc gtttttccca ttcaaagatt ttccggcctt tttcaagaca ctccggcaac
     4921 cctgcgctgt aaatacgttt gcccgtgagc ggattagcat ctccttcgcg ggcggcgttg
     4981 cgtaaacgaa tttcaacagg atcaatacct aacgctgtcg cggcgtcatc aagcatagac
     5041 tcaacggcaa atacgacttg tggcgcgcca taaccacgca tcgcaccagc cgaggggagg
     5101 ttggtatagc aggtctttga actgtaagcg taggcacaac gaggataaag gtaagcgact
     5161 ttattccccc ccgcagaagc gatggagtgc ccgtgagatg cataagcgcc ggtgttagac
     5221 agaacatcca gactataacc tttcaatgtt ccgtcgcggt tcacgcccat ttgcccgtca
     5281 atggtaaaag cgtggcgggt acgggttgcg aggaaacact cttcacggct aagggaaact
     5341 ttcaccggaa tgccgccaag cttgctggtc aggaatgccg ccattggctc ttccagtaca
     5401 tcctgtttat taccaaaacc gccaccgaca aatggtttga tgactcgtac gcatgaccag
     5461 ggaatatcca gcgcctgacc aaccacgcgg cgaacaatgt gcgggatctg ggtgctggaa
     5521 acgatggtaa ttcgcgagtc atcctccatc cacgccagcg atgttacgct ttccatgtga
     5581 caatgttgaa taacgggggt ctgatagtgc ccctgtacct ggtagtcggc ggcatcgatt
     5641 gtttgttgga cattacccgt cgacatcgtg ctttgtttca gtaaattgcc accgttatgg
     5701 attggtgcag cgtcttctgc cagcgccgct tctggcgtgg tgataacggg taattcttgc
     5761 cactcaatgc tgaccaattg cgccgctttt tctgccgtga gttcatcgcg ggccacgacg
     5821 atggcaatgg cgtcaccatg atgacgaaca tggcgagtta gcagtgcgcg atcggcggta
     5881 tcgcgcttgt tttcgtcaag tgtccaggca tgcccagctg tagcgaatgg aatatcaggc
     5941 acatcttccc aggtaaaaat cgccagtacg cccggcaaac ttctggcttg ttcatcatta
     6001 atacttacgg cataaccatg tgcgataggg ctacgtacat atttcgcata acacatgccc
     6061 gccataacat aatcgtcagt atatcgtgcc cgcccggtga ccttagcaat ggcatcgacg
     6121 cgcatgcatg attcacccgt agcggttgct tcccgcgctt ccatagaaat cccctcgatt
     6181 tgaacatttg gttcttatgg caaagattta gtctaagcag gcaagattta cgccagaaac
     6241 gacgataagc gttaggggag gtaggaagtg tgatgacgtt aaaaaaacac agatatgata
     6301 cgaaacagga gtctgaatag gggcagtgat acgtatcaat atgagtggcg ataaaatcaa
     6361 tgtgataaat tgggattatt acgcatcagg
//
LOCUS       DAJVUP010000201         6337 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.201, whole genome shotgun sequence.
ACCESSION   DAJVUP010000201 DAJVUP010000000
VERSION     DAJVUP010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6337
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.201"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            30..152
                     /locus_tag="OQQ75_003837"
     CDS             30..152
                     /locus_tag="OQQ75_003837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001124879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HCS1977993.1"
                     /translation="MPKKMRTTRNLLLMATLLGSALFARAADKEMTIGAIYLDT"
     gene            168..1013
                     /locus_tag="OQQ75_003838"
     CDS             168..1013
                     /locus_tag="OQQ75_003838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001248814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS1977994.1"
                     /translation="MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA
                     IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLSN
                     AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK
                     AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE
                     NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH
                     VDGLP"
     gene            1036..2547
                     /locus_tag="OQQ75_003839"
     CDS             1036..2547
                     /locus_tag="OQQ75_003839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HCS1977995.1"
                     /translation="MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGK
                     NGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEG
                     LTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEI
                     ARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASC
                     ATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKP
                     KLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLETYEQGEIVINGEKITRPDYGDM
                     LKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMT
                     VKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVREL
                     AAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHSPVNVDELMSAILSVH"
     gene            2572..3570
                     /locus_tag="OQQ75_003840"
     CDS             2572..3570
                     /locus_tag="OQQ75_003840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1977996.1"
                     /translation="MSASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNA
                     PGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEV
                     PLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID
                     ENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGIN
                     VRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRG
                     SLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR"
     gene            3603..4697
                     /locus_tag="OQQ75_003841"
     CDS             3603..4697
                     /locus_tag="OQQ75_003841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS1977997.1"
                     /translation="MKINRIVNEGFMKTMLAAYLPGNSTVDLREVAVPTPGINQVLIK
                     MKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDR
                     VLVYHISGCGFCPNCRRGFPISCTGKGKAAYGWQRDGGHAEYLLAEEKDLILLPDALS
                     YEDGAFISCGVGTAYEGILRGEVSGSDNMLVAGLGPVGMMAMMLAKGRGAKRIIGVDM
                     LPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALRSTA
                     DWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAI
                     THRFSLEQAGDAYALMASGKCGKVVINFPD"
     gene            4709..5581
                     /locus_tag="OQQ75_003842"
     CDS             4709..5581
                     /locus_tag="OQQ75_003842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HCS1977998.1"
                     /translation="MTIYTLSHGPLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATD
                     ASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLC
                     LVYEHRRGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQ
                     AQASGYWLEREQWLAGEFCEQLPQELDFNQLAPLPRQWVNNGFAGWNGQARIEQPQEG
                     YAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPG
                     ESTTSEMSLRVEWL"
     gene            complement(5629..6051)
                     /locus_tag="OQQ75_003843"
     CDS             complement(5629..6051)
                     /locus_tag="OQQ75_003843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS1977999.1"
                     /translation="MNTLRYFDFGAARPVLLLIARIAVVLIFIILGFPKMMGFDGTVQ
                     YMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDM
                     TGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR"
     gene            complement(6148..>6337)
                     /locus_tag="OQQ75_003844"
     CDS             complement(6148..>6337)
                     /locus_tag="OQQ75_003844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenoxybenzoate dioxygenase"
                     /protein_id="HCS1978000.1"
                     /translation="WLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSG
                     KTFDAKLLIDENIALKSL"
BASE COUNT         1469 a         1515 c         1834 g         1519 t
ORIGIN      
        1 ttgttaataa aaaccctaca ggaggcacta tgcctaaaaa aatgagaaca acccgtaatc
       61 tattattaat ggctacgcta ttaggtagcg cactatttgc cagggctgcg gataaagaaa
      121 tgaccattgg tgcaatatac cttgatacct agggatatta cgctggagtg cgtcagggcg
      181 ttcaggatgc ggcaaaagat tcttcagtac aggtacagtt aattgaaact aacgcccagg
      241 gtgatatttc gaaagaaagt acctttgttg ataccctcgt ggcgcgtaat gtcgatgcca
      301 ttattttatc ggcagtgtct gaaaatggca gtagccgtac cgttcgtcgc gccagtgaag
      361 cgggtattcc ggtgatttgc tacaacacct gtattaatca aaagggtgtc gataaatatg
      421 tctcggcgta tctggtcggc gatccactgg aatttggtaa aaaactgagt aacgctgccg
      481 ccgattattt tattgccaat aaaattgacc agccgaaaat tgccgtcatc aattgcgaag
      541 cctttgaagt ttgtgtgcag cgacgtaaag gatttgaaga agtattaaaa tcccgcgttc
      601 ccggcgcgca aattgtcgct aatcaggaag ggactgtttt agataaagcg atttccgttg
      661 gtgaaaaact gattatctcc acgccggatc tcaacgccat tatgggggag tcgggcggtg
      721 cgacactcgg cgcggtaaaa gcggtacgta atcaaaatca ggccggaaaa attgctgttt
      781 tcggttcgga tatgacaacc gaaattgctc aggagctgga aaacaatcag gtgctgaaag
      841 cggtagtgga tatttccggt aagaaaatgg gcaatgctgt tttcgcgcaa acattgaagg
      901 ttatcaataa acaagccgac ggtgaaaaag tgattcaggt gccaatcgat ctctatacca
      961 aaacggaaga tggtaaacag tggctggcaa cgcacgttga tggtctgccc taatcgctga
     1021 ttcgcagagg tccctatgtt cacggcaaca gaggcagtcc cggtagcaaa agtggtggca
     1081 ggaaataagc gttaccccgg cgtcgttgcg ctggataacg ttaacttcac gctcaataaa
     1141 ggcgaagttc gtgcgctgtt aggtaaaaac ggcgcgggca aatcgactct cattcgaatg
     1201 cttaccggca gcgaacgccc ggatagcggt gatatctgga ttggcgagac gcgactggaa
     1261 ggtgacgaag ctacgttgac tcgccgtgcc gctgaactgg gggttcgtgc ggtttatcag
     1321 gaattaagtc tggtggaagg gctgacggtg gcagaaaacc tctgccttgg tcaatggcct
     1381 cgccgcaacg gcatgattga ttacctgcaa atggcgcagg atgcccaacg ttgcttacag
     1441 gcgctgggcg ttgacgttag tcctgaacaa cttgtttcaa cgctaagccc ggcgcaaaag
     1501 caactggtgg aaattgcacg ggtgatgaag ggcgagccgc gcgtggtcat tcttgatgaa
     1561 cccaccagct cgcttgccag tgcagaagtt gaactggtga tcagtgcggt gaaaaagatg
     1621 tcggcactgg gcgtggcggt gatttatgtc agccaccgga tggaagaaat ccgccgcatt
     1681 gcctcctgtg ccaccgttat gcgcgatggt caggtggcgg gcgatgtgat gctcgaaaac
     1741 acctccacgc atcatattgt gtcgctaatg ctagggcgtg atcacgttga tattgcgccg
     1801 gttgcccctc aggaaattgt ggatcaggcc gtactggaag tccgtgcgtt acgccataag
     1861 cccaagctgg aggatatcag ctttacgtta cgtcgcggcg aagtgcttgg cattgctggc
     1921 ctgctggggg cagggcgcag tgaattgctg aaggcgattg ttgggctgga gacgtatgaa
     1981 cagggcgaaa ttgttatcaa cggcgagaaa atcacgcgcc ccgattacgg cgacatgctg
     2041 aaacgcggca ttggctatac gccagaaaac cgcaaagaag cggggatcat tccctggttg
     2101 ggcgttgacg aaaatacagt gctgaccaat cggcaaaaaa tcagcgccaa cggagtgctg
     2161 caatggtcca ccatccgccg cctgaccgaa gaggtgatgc agcggatgac ggtcaaggcc
     2221 gccagtagcg aaacgcccat cggcacgctt tctggtggca atcagcaaaa agtggtgatc
     2281 ggtcgttggg tctatgccgc cagccagatt ttgttgctcg acgagccaac gcgcggcgtc
     2341 gatatcgaag ccaaacagca gatttaccgt attgtccgtg agctggctgc cgaaggaaaa
     2401 agcgtggtgt ttatctccag tgaagtggag gagttgccgc tggtgtgcga ccgcatcctg
     2461 ttgttacagc acggtacgtt ctcgcaggag tttcactcgc cggtcaatgt ggatgagctg
     2521 atgtccgcca ttctgtctgt gcactgatga attttaccga ggaacctgaa gatgtctgct
     2581 tcgtcattat cattgccgct gggcaagagc gtctcgctca aacaatttgt cagtcgccat
     2641 attaatgaga tcggtttgct ggtggtaatc gccattcttt atctggtctt ctccctgaat
     2701 gcgcctggct ttatctcatt gaataaccag atgaacgtgc ttcgcgatgc tgccaccatc
     2761 gggatcgccg cctgggcaat gacgctgatt attatctccg gtgaaattga tgtcagcgtt
     2821 ggaccgatgg tggcttttgt ctcggtgtgc ctggcatttt tgctgcaatt tgaagttccg
     2881 ttggcgattg cttgtctgct ggtgttgctg ttaggcgcgc tgatgggaac gctcgccggg
     2941 gtgctgcgcg gcgtgtttaa cgtgcccagt ttcgttgcca cactggggct gtggagcgcc
     3001 ctgcgcggaa tggggctgtt tatgaccaac gcactgccag tgccgattga cgaaaacgag
     3061 gtgctggact ggctgggcgg acaatttctc ggtgtgccag tatccgcgct gatcatgatg
     3121 gtgttgtttg cgctgtttgt gttcattagc cgaaaaaccg ccttcgggcg ctcggttttt
     3181 gccgttggcg gtaatgccac ggcggcgcag ttgtgcggta ttaacgttcg tcgagtgcgc
     3241 attcttatct ttaccctttc gggattatta gcggcggtga ccggcatttt gctggcggca
     3301 cgcctcggtt ccggtaacgc aggtgccgca aacggtctgg agtttgacgt catcgccgcg
     3361 gtcgtggtcg gcggtacggc actttccggc ggtcgcggtt ccctgttcgg tacattgctt
     3421 ggtgtgctgg tgattacgct aatcggtaac ggtctggtgc tgctcggtat taactccttt
     3481 ttccagcagg tggtacgcgg cgtcatcatc gtggtggcgg tgctggcgaa tatcttgctg
     3541 acccagcgaa gcagtaaagc gaaacgctaa accttaacgc ccctggcgcg ggtgcggcag
     3601 ggatgaaaat taatcgtatt gttaatgagg gatttatgaa aacgatgctg gcagcttatt
     3661 taccaggaaa ttcaaccgtc gatctgcggg aagttgcggt gccgacgccg gggattaacc
     3721 aggtactgat caaaatgaaa tcctccggga tttgcggaag cgatgtccac tatatctatc
     3781 atcaacaccg tgccacggcg gcggcacccg ataaaccgtt ataccaggga tttatcaacg
     3841 gtcatgaacc atgcgggcag attgtggcga tggggcaagg ctgtcgccat tttaaagagg
     3901 gtgatcgcgt gctggtgtat cacatttctg gctgtggttt ttgcccgaac tgccgccgcg
     3961 gctttcctat ctcttgtact ggcaaaggaa aagcggctta cggctggcag cgtgacggcg
     4021 gtcatgccga atacttgctg gcggaagaaa aagatctgat cctcctgccg gatgcgctta
     4081 gctacgaaga tggtgcgttt atcagttgcg gcgttggtac agcgtatgaa ggaattttgc
     4141 gcggcgaagt ttccggcagt gataacatgc tggtggccgg tctggggcca gtcggcatga
     4201 tggcgatgat gctggcgaaa ggtcgcggtg caaaacggat catcggcgtt gatatgctgc
     4261 cggaacgtct ggcgatggca aaacagttag gggtgatgga tcacggctat ttagcaacca
     4321 ccgaaggtct gccgcagatt atcgccgaac tcacccacgg tggcgcggat gttgcgctcg
     4381 attgttctgg taatgccgca ggtcgcttgc tggcactgcg atccaccgct gattggggac
     4441 gggtggttta catcggagaa accggaaaag tggagttcga ggtcagcgcc gatctgatgc
     4501 accatcaacg gcggattatc ggctcctggg tgaccagtct gttccatatg gaaaaatgcg
     4561 cccatgatct gacggactgg aaactgtggc cgcgtaacgc cattacccat cgcttctcgc
     4621 tggaacaggc tggagatgcc tatgcgctga tggcgagcgg caaatgcggg aaagttgtga
     4681 ttaacttccc ggattaagga gttagcggat gaccatctat accttatctc acggaccgct
     4741 aaagctggat gtctctgacc agggcggcgt aatcgaaggc ttctggcgtg acacgacgcc
     4801 gcttttacgt cctggtaaaa aaagcggtgt ggcaaccgat gcttcctgtt ttccgctggt
     4861 gccgtttgca aaccgggtga gcggcaatcg ttttgtctgg caggggcgtg agtatcaact
     4921 gcaaccgaat gttgagtggg atgcgcacta tctacacggc gatggctggc tgggcgagtg
     4981 gcaatgtgtc tcgcacagcg atgatagctt gtgtctggtg tatgaacatc gcagaggtgt
     5041 ctatcactat cgggtaagtc aggcgtttca tttaacggcg gatacgctga cggtgacgct
     5101 ctctgtcacc aatcaagggg cagagacgct gccatttggt accggctggc atccttattt
     5161 tccgttgtca ccacaaacgc ggattcaggc gcaggcgagc ggttactggc tggagcggga
     5221 gcagtggctg gcgggtgagt tttgcgagca gctaccgcag gaactggatt ttaaccagct
     5281 cgcgccgttg ccgcgccagt gggtgaacaa tggttttgcc ggatggaatg gtcaggcccg
     5341 catcgagcag ccgcaggaag gttatgccat catcatggaa acgacgccac ctgcaccgtg
     5401 ttatttcatc tttgtttccg accctgcgtt tgataaagga tatgcgtttg atttcttctg
     5461 tctggaaccg atgagccatg cgccggatga tcatcatcgc ccggaagggg gtgatctcat
     5521 tgcgctagca ccaggggaat caacaacttc agagatgtcg ttgcgggtag agtggctgta
     5581 atttattaaa tgccggataa ggcgttcacg ccgcatccgg catctttcct aacgccgatc
     5641 gagagaaatt gcccccggcc cggtaattgc caatagcaag aacgcgccag cgatactgac
     5701 attcttccag aaattaatca tatttggccc aaccgcatcg ccggtcatat cccagtaatg
     5761 gtgaccaatc accgccgtac ccagcgtgta gaaaataaac agcaccgcca gcggacgggt
     5821 gaaaaagcca agcacgatta atatcgcggc gggcacttcc ataactaccg caataatcgc
     5881 tgccagcatc ggcattggcg cgcccaacga ggccatatat tggaccgtac cgtcaaagcc
     5941 catcattttg ggaaaaccca aaataatgaa aattaagacc acggcgatac gggcaattaa
     6001 taacaaaacg gggcgggcag ctccaaaatc aaaataacgt agtgtgttca taaccaatcc
     6061 ctttgcaaga taatgtgatt taaacgtaat acacactctt gcacctcgcc acgccccagg
     6121 cgttgagata ttcgctaatt atcctggtta cagtgattta agcgcgatgt tctcatctat
     6181 cagcagtttc gcatcaaacg ttttgccgct ctggatccat ttgcgaattg ggcgaatctc
     6241 acgcccctga ttcagcgtga ccgcaccgat aagcacgccg ttttgcagat taaaccaaat
     6301 cgccttctga gtttccgggt tgccacgaca aagccag
//
LOCUS       DAJVUP010000202         6294 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.202, whole genome shotgun sequence.
ACCESSION   DAJVUP010000202 DAJVUP010000000
VERSION     DAJVUP010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6294
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.202"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(85..621)
                     /gene="ssb1"
                     /locus_tag="OQQ75_003845"
     CDS             complement(85..621)
                     /gene="ssb1"
                     /locus_tag="OQQ75_003845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein SSB1"
                     /protein_id="HCS1978001.1"
                     /translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK
                     ATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV
                     VVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
                     PAAPSNEPPMDFDDDIPF"
     gene            875..3697
                     /gene="uvrA"
                     /locus_tag="OQQ75_003846"
     CDS             875..3697
                     /gene="uvrA"
                     /locus_tag="OQQ75_003846"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HCS1978002.1"
                     /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG
                     EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLA
                     ESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
                     CPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEA
                     PWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSA
                     VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG
                     QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV
                     MYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
                     HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLK
                     DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF
                     DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRC
                     EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE
                     FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL
                     DEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
                     ILVSGTPETVAECEASHTARFLKPML"
     gene            complement(3732..4088)
                     /locus_tag="OQQ75_003847"
     CDS             complement(3732..4088)
                     /locus_tag="OQQ75_003847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1978003.1"
                     /translation="MTISELLQYCMAKLGAEQSVHNDWKATQIKVEDVLFAMVKEVEN
                     RPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQ
                     AVNLLPEEKRKLLVQL"
     gene            complement(4092..4508)
                     /locus_tag="OQQ75_003848"
     CDS             complement(4092..4508)
                     /locus_tag="OQQ75_003848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HCS1978004.1"
                     /translation="MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQH
                     TSASLTLNENCDPTVRHDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMQGTSLVL
                     PLHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE"
     gene            complement(4619..5332)
                     /gene="aphA"
                     /locus_tag="OQQ75_003849"
     CDS             complement(4619..5332)
                     /gene="aphA"
                     /locus_tag="OQQ75_003849"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HCS1978005.1"
                     /translation="MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQA
                     PIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFW
                     EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPAT
                     NMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY
                     KPLPQAGAFGEEVIVNSEY"
     gene            5734..5956
                     /locus_tag="OQQ75_003850"
                     /pseudo
     CDS             5734..5956
                     /locus_tag="OQQ75_003850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165333.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1594 a         1554 c         1569 g         1577 t
ORIGIN      
        1 cataacggag gcttcttttt tatggctggc agatgcttta atcatccacc ttaaaacaat
       61 ataacctatt gttttaatga caaatcagaa cggaatgtca tcatcaaagt ccatcggcgg
      121 ctcgttagac ggcgctgccg gagcggactg ctgcgggcga gactgcgcgc cgccgctgaa
      181 ctgattgcca ccctgcggct gctgaggctg accccaaccg ccctgcggct gaccaccacc
      241 gatattacca cctgccggag cgccaccacc ctgacgacca cccagcatct gcatggtgcc
      301 gccaacgttc accacgactt ctgtggtgta gcgatcctga ccggattgat cggtccattt
      361 acgggtacgc agctgacctt cgatataaac ctgagaacct ttacgcagat attcgctggc
      421 cacttctgcc agtttgccga acagcacaac gcggtgccat tcagtctgtt ctttcatctc
      481 gccggtcgct ttatcacgcc aggattcgga agtagccagc gtaatgttgg caactgcgcc
      541 accatttggc atgtagcgta cttccgggtc ctgacccaga ttaccaacga gaataacctt
      601 gtttacgcct ctgctggcca tgttcgtgtc tcctgaaaaa aatcgttctg aataagtgta
      661 aacgcgcgat tgtaccatta ccaatagcgc ttttactatg ttgtgacctc ggttccggga
      721 aacaaacctg gccagacatt gttacacaac actccggata atgcattcca atactgtata
      781 ttcattcagg tcaatttgtg tcataattaa ccgtttgtga tcgccggtag caccatgcca
      841 ccgggcaaaa aagcgtttaa tccgggaaag gtgaatggat aagatcgaag ttcggggcgc
      901 ccgcacccat aatctcaaaa acatcaacct cgttatcccc cgcgacaagc tcattgtcgt
      961 gaccgggctt tcgggttctg gcaaatcctc gctcgctttc gacaccttat atgccgaagg
     1021 gcagcgccgt tacgttgaat ccctttccgc ctacgcgcgg cagtttctgt cactgatgga
     1081 aaagccggac gtcgatcata ttgaggggct ttctcctgcc atctcaattg agcagaaatc
     1141 gacgtctcat aacccgcgtt ctacggtggg gacaatcacc gaaatccacg actatttgcg
     1201 tttgttgttc gcccgcgtcg gcgaaccgcg ctgtccggac cacgacgtcc cgctggcggc
     1261 gcaaaccgtc agccagatgg tggataacgt gctgtcgcag ccggaaggca agcgtctgat
     1321 gctactcgcg ccaatcatta aagaacgcaa aggcgaacac accaaaacgc tggagaacct
     1381 ggcaagccag ggttacatcc gtgctcgtat tgatggcgaa gtctgcgatc tttccgatcc
     1441 gccgaaactg gaactgcaaa agaaacacac tattgaagtg gtggttgatc gcttcaaggt
     1501 gcgtgacgat cttacccaac gtcttgcgga gtcgtttgaa accgcgctgg agctttccgg
     1561 tggtacagcg gtagtggcgg atatggacga cccgaaagcg gaagagctgc tgttctccgc
     1621 caacttcgcc tgcccaattt gcggctacag tatgcgtgaa ctggagccac gactgttttc
     1681 gtttaacaac ccggcaggtg cctgcccaac ctgtgacggc cttggcgtac agcaatattt
     1741 cgatcctgac cgcgtgatcc aaaaccccga gctgtcactg gctggcggtg cgatccgtgg
     1801 ctgggatcgc cgcaacttct attacttcca gatgctgaaa tcgctggcag atcactataa
     1861 gttcgacgtc gaagcgccgt ggggcagcct gagcgcgaac gtgcataaag tggtgttgta
     1921 cggttctggc aaagaaaaca ttgaattcaa atacatgaac gatcgtggcg atacctccat
     1981 ccgtcgtcat ccgttcgaag gcgtgctgca caatatggag cgccgttata aagagacaga
     2041 atccagtgcg gtacgtgaag aattagccaa gtttatcagc aatcgcccat gcgccagctg
     2101 cgaagggacg cgtctgcgtc gggaagcgcg ccacgtttat gtcgagaata cgccgctgcc
     2161 tgctatctcc gacatgagca tcggtcatgc gatggaattc ttcaacaatc tcaaactagc
     2221 tggtcagcgg gcgaagattg cagaaaaaat ccttaaagag atcggcgatc gtctgaaatt
     2281 cctcgttaac gtcggcctga attacctgac actttcccgc tcggcagaaa cactttccgg
     2341 cggtgaagcc cagcgtatcc gtctggcgag ccagattggt gcgggcctgg ttggcgttat
     2401 gtatgtactg gacgagccgt ctatcggcct gcaccagcgc gataacgagc gcctgttggg
     2461 tacgcttatc catctgcgcg atctcggtaa taccgtgatt gtggtggagc atgacgaaga
     2521 cgcaattcgc gccgctgacc atgtgatcga tatcggtcct ggtgcgggtg ttcacggcgg
     2581 tgaagtggtc gcagaaggtc cgctggaagc gatcatggcg gtgcctgaat cgttgaccgg
     2641 gcagtacatg agcggtaaac gcaagattga agtgccgaag aaacgcgttc cggcgaatcc
     2701 agaaaaagtg ctgaagctga caggtgcacg cggcaacaac ctgaaggacg tgacgctcac
     2761 gctgccagtc ggtctgttta cctgcatcac aggggtttca ggttccggta aatcgacgct
     2821 gattaacgac acactgttcc cgattgccca acgccagttg aatggtgcga ccatcgccga
     2881 accggcaccg tatcgcgata ttcaggggct ggagcatttc gataaagtga tcgatatcga
     2941 ccaaagccca attggtcgta ctccacgttc taacccggcg acctataccg gcgtgtttac
     3001 acctgtgcgc gaactgtttg cgggcgtacc ggaatcccgt gcgcgtggtt atacgccagg
     3061 acgtttcagc tttaacgtcc gtggcgggcg ctgcgaagcc tgtcagggcg acggtgtgat
     3121 caaagtggag atgcacttcc tgccggatat ctacgtgccg tgcgatcagt gcaaaggtaa
     3181 acgctataac cgtgaaacgc tggaaattaa gtacaaaggc aaaaccatcc acgaagtgct
     3241 ggatatgacc atcgaagagg cgcgtgagtt ctttgatgcg gtgccagctc tggcgcgtaa
     3301 gctgcaaacg ttgatggacg ttggtctgac gtacattcgc ctggggcagt ccgcaaccac
     3361 actttctggt ggtgaagccc agcgcgtgaa gctggcgcgt gagctgtcaa aacgcggcac
     3421 cgggcagacg ctgtatattc tcgacgagcc gaccaccggt ctgcacttcg ccgatattca
     3481 gcaactcctc gacgtgctgc ataaactgcg cgatcagggc aataccattg tggtgattga
     3541 gcacaatctc gacgtgatca aaaccgctga ctggattgtc gacctgggac cagaaggcgg
     3601 cagtggcggc ggcgaaatcc tcgtctccgg tacgccagaa accgtcgcgg agtgcgaagc
     3661 ttcgcatacg gcacgcttcc tcaagccgat gctgtaatcg ttaaggccgc tttctgagcg
     3721 gccttttcct ttcagagttg taccagcaat ttacgctttt cttccggtag taaattcact
     3781 gcctgctgat aagacgcatc caccagataa tagatttgcg aatccggcag cgaaccgtcg
     3841 agatacacgg tgctccagtg cgctttattc agatggcggc taggacgcac atcgctgtgc
     3901 tgctgacgta gcagctccgc cagctccggg ctggttttca gcgaaacagc tgggcgattt
     3961 tctacttctt tcaccatcgc aaacagtaca tcttccactt tgatctgcgt cgctttccag
     4021 tcgttatgca cgctctgttc tgcgcctagt tttgccatgc aatattgtag caactccgaa
     4081 atggtcattt tttactcccc ttgtagtgtc gcgatgatgc gacgcgatcc gccgtggatg
     4141 cgatgttccc ccagccagat gccttgccag gtgccggtct gaatacgccc tttatgtaac
     4201 ggcaatacaa gcgatgttcc ctgcattgag gatttgatat gagaaggcat atcgtctgct
     4261 ccctcatagt catgctcata atttccgttg tcgggaacgg tgcggaggaa aaaacgctcc
     4321 atgtcgtggc gtacggtggg atcgcagttc tcattaagtg tcagagaggc ggaggtatgt
     4381 tgcagcaaca gatgcagtaa gccgatgtta acgcgcggca tatcagccag ctgattcaga
     4441 atttcatccg ttaccagatg aaacccacga gatttggcgc taagcgtgag cgtcttttga
     4501 taccacatgt gctgctcctt gataaaactc tcttaatcag tttgcagcaa gacagcgaaa
     4561 ggataaaggt gtgattaaaa aaacagcatt cgggagagca tcacgctctc ccgctctgtc
     4621 agtattctga attgacgatc acctcttcac caaacgcacc cgcttgtggc aagggtttgt
     4681 aggtagagtt ggaggcgcgc agaatgcgga taccacgagc gccgacatcg cgtgcggcgg
     4741 taatatcatt atcagaatcg ccataaaaaa ttcggatatt tttatcctgc agccattgcg
     4801 attttgtatt ttgccctggt ttatcgcccg caaagatcac cggattcatg ttggtggcag
     4861 gaatatgaaa attatccgcc agcgtttttg aaaccgtttc tgttttcgtc ggactacgac
     4921 cagtcacaaa gaagatcgcg tcaccgcggc gtacatgcat atcaatcagc tggcgagcga
     4981 cctcttttgg aatgctgaat tcatcccagc cattgttcat tttttcccag aacacaggat
     5041 ttttcagata atcttcgctt tctggcgaga aggttttttt gccgcgccag aagcccgggc
     5101 tggaaaaaag taccgtgtca tcgatatcaa accccaccgc cattggcgga cgccctgcga
     5161 ggctattttc aatttgtgcg accgaaaccc aatgaattgg tgcctgttca gcaagcctgg
     5221 caacgttagt accagggtta agcggtgaag gagatgaggc cagggcaaca gcggaactgt
     5281 ttagagcgaa caataagcaa acggcactga ttgcctgtgt gatcttgcgc atatttttcc
     5341 ctaaatagtc agtatgttga aactttttat tgtgagattt gttgcaaaaa ccatctgacc
     5401 ataacgccag ctgcagggga aaggaaggat tatctgcggt ttttgtgatg aaaagcagga
     5461 tgattatatt taacccagta aatacgttcc tgtctttttt tgtataaaaa atgtttatta
     5521 ctcgatgtaa ggatacatta attttacgtt tattatgatg aatcctctgc aaatgagcga
     5581 aatttgatag aacatttatc tgctgtacga tttaatgaac ttaatgatac agcattacaa
     5641 aaacaatcga agtttataaa gatgattcct gattgaccag aaccctatcc tacaatggtg
     5701 attaatttta ttactcgcga tggagatgat gatatgaata tatcatatat gaatagcaac
     5761 aaaacgacat ctttacctgt tgagctagat gcactaaata ataaagatat ctcttatgcc
     5821 aaagattttt cttatgtcaa agatttcttt ttatacatag aaacacagtt aaaaattgca
     5881 aaagattttt gtagacttgg agaagaagta tcaagttcta ttgcaagtaa agtttttcac
     5941 gcatttattg atttagttaa caaaatcagg ggtaagaaag actttatgta tatttgcacg
     6001 ctttgctgtt ttgccgagga ggttaaaggt gattattctc attacaggac ctttttattt
     6061 gatattggta atcaatataa ggttaaactt acacaaagcg gaaaaaaaga gttctcttta
     6121 acattagaat ttaacgatac tataattgaa tctcagaaag tcacaggcaa taaggcaaag
     6181 catattcttg aggatataga aatattctat cgtaacaaac ccgatactta ttattaaatt
     6241 taataatggt tagatgtgca gaaattatta ctccacacga aaaaataggg aaag
//
LOCUS       DAJVUP010000203         6225 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.203, whole genome shotgun sequence.
ACCESSION   DAJVUP010000203 DAJVUP010000000
VERSION     DAJVUP010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6225
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.203"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..156
                     /locus_tag="OQQ75_003851"
     CDS             <1..156
                     /locus_tag="OQQ75_003851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978006.1"
                     /translation="ILQLCRNDSLMIGRESFSVDRITPDDGGCSYIRLRREGAGNVRA
                     GGYYEGA"
     gene            143..716
                     /locus_tag="OQQ75_003852"
                     /pseudo
     CDS             143..716
                     /locus_tag="OQQ75_003852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001214489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            713..1114
                     /locus_tag="OQQ75_003853"
     CDS             713..1114
                     /locus_tag="OQQ75_003853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978007.1"
                     /translation="MNRHTQIRQAVLASLKGECGGNVVLFDGLPAFIDAQELPAVAVW
                     LSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLID
                     TMIPLGFNYQRDNEMATWAMAEITYQITYTN"
     gene            1125..1865
                     /locus_tag="OQQ75_003854"
     CDS             1125..1865
                     /locus_tag="OQQ75_003854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707740.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HCS1978008.1"
                     /translation="MTTPNPLAKTKGAGTTFWMYTGKGDAFANPLSDTDWLRLAMVKD
                     LQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTLATLAWRPGDSGQKKLVQLFDS
                     GEVCAFRIKYPNGTVDVFRGWLSSLGKTITSKEVMTRTVKISGVGRPYLAEEGAETVG
                     VTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKG
                     VKQGSVSIVGMTSDGEFVAVAAVTVSAP"
     gene            1924..2310
                     /locus_tag="OQQ75_003855"
     CDS             1924..2310
                     /locus_tag="OQQ75_003855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707739.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS1978009.1"
                     /translation="MFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEG
                     ELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAER
                     VLSLSGMGTIENAGDDDHEALTPEKS"
     gene            2319..2647
                     /locus_tag="OQQ75_003856"
                     /pseudo
     CDS             2319..2647
                     /locus_tag="OQQ75_003856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308863.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
     gene            2619..5660
                     /locus_tag="OQQ75_003857"
     CDS             2619..5660
                     /locus_tag="OQQ75_003857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1978010.1"
                     /translation="MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAAGDAERSSARMQ
                     RFMERQTQAARQTMHAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQK
                     MREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQ
                     DYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGV
                     SSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRA
                     GWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEEFNRQLALTGHYAGVTVG
                     QLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDT
                     INQFKRLKDDPVNAAKALDNALHFLTATQLEQIRVLGEQGRSSDAARIAMSALAEETG
                     KRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYP
                     WTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNET
                     EAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYS
                     QQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKN
                     ELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGD
                     KQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKR
                     YWQELEVAQGDWKNGAMRAFQNFTADADNAVGTAEQMFTVAFSSAGNALATFCTTGKL
                     NFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVN
                     RPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIGINND
                     GTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR"
     gene            5660..5989
                     /locus_tag="OQQ75_003858"
     CDS             5660..5989
                     /locus_tag="OQQ75_003858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978011.1"
                     /translation="METFRWKVRPDMNVVSEPKVVAVKLGDGYEQRRPAGLNNLLSTY
                     SVTIRVRKGEHPPLKAFLERHGGVRAFQWTPPYDWKPIRVACRKWSASVGALWVTVTA
                     DFEQVVN"
     gene            5989..6225
                     /locus_tag="OQQ75_003859"
                     /pseudo
     CDS             5989..6225
                     /locus_tag="OQQ75_003859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309672.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
BASE COUNT         1512 a         1421 c         2019 g         1273 t
ORIGIN      
        1 attttacagc tgtgtcgcaa tgattcgctg atgattggcc gggagtcttt cagcgtggat
       61 cgtattactc ctgatgacgg cggatgtagt tatatccggt tgcggcgtga aggagcagga
      121 aacgtaaggg cagggggata ttatgagggg gcttgagaat gccatccgca atctgaacag
      181 tcttgatacc cgtatggtgc cgcaggccag cgcatgggca gtaaaccggg ttgctgcaaa
      241 agttgtctcg gttgccaccc ggcaggtcgc caggaatacc gttgcgggag ataaccaggt
      301 gaaggggggc cccctgaaac tggtgcgtca gcgcgtccgg gtatttaaag ccagtccggc
      361 aggaaaaatg tatgcccgta tccgtgttaa ccggggcaat ctgcccgcca ttaagcttgg
      421 cacaacatgc cggcgtgccg gtgacggact gaaggtgggg aaatactttt ttcgtggtgc
      481 gtttatccag cagctggcga acggtcgctg gcatgttctc aggcgtcttc ctgaagcgtg
      541 ttttgaaaca ggaaaggaca gtaaggggcg gcccagaaaa aatcgtctgc ccgtggaggt
      601 tgtgaaaatt ccgctggccg gaccgctgac acaggcattt gaggatgccc gcgatcgcat
      661 cattgaaaca gctggggtat gccctgaaac agcaactgag gatacatttg ggatgaacag
      721 gcacacacaa atccgccagg cagtactggc aagcctgaag ggcgaatgcg gggggaatgt
      781 cgtgcttttt gacgggcttc cggcatttat tgatgcgcag gaactgcccg ccgtggcggt
      841 gtggctgagt gatgcgcagt acaccggaaa aatgacggat gaggacgact ggcaggctgt
      901 tctgcatatt gccgttttcg tccgtgcaca ggcgccggat tctgagctgg atacgtggat
      961 ggagaacacc atatttccgg ccatgaagga tattccggtg ctttccggac tcatcgacac
     1021 catgatccca ctcggtttta actatcaacg tgataatgag atggccacct gggcgatggc
     1081 ggaaatcacg taccagatca cgtacacgaa ttaaggaggt ggcaatgacc acaccaaatc
     1141 cactggcaaa gacgaaaggt gcgggaacga cgttctggat gtacaccggc aagggcgatg
     1201 cgtttgcgaa ccctttgtcg gacactgact ggctgcgtct tgcgatggtg aaggatctgc
     1261 aacctggcga aatgaccgct gatgcagaag atgacactta tctcgatgat gaagatgcag
     1321 actggaaaac gacaacccag gggcagaaat ccgtcggtga tactttggcg acgctggcct
     1381 ggcgtccggg tgacagcggg cagaaaaaac tggttcagtt gttcgattcc ggtgaagtct
     1441 gcgcgtttcg tatcaaatac cccaacggta cggttgatgt tttccgtggc tggctgagtt
     1501 cactgggtaa aaccattacc tcaaaagagg tgatgacccg tactgtaaaa atcagcggtg
     1561 tggggcgtcc gtatctggca gaggagggcg ctgaaaccgt gggtgttacc ggactgacgg
     1621 tggcaccggc atctgtcagt gtcaaagcgg gagcaaccac cacactgacc tttacagtaa
     1681 aacctgacgg ggccagtgac aaagcgatca gtgtgcattc gtcagatcct cagactgctt
     1741 cggtgaccct gagcgggctt gtggccacgg tgaaaggcgt gaagcagggc agtgtcagca
     1801 tcgtgggcat gacctctgac ggagagtttg tggcagtggc tgcggtgacc gtcagcgcac
     1861 cataacagga cgatactcat cattgccccg gttatccggg gctttttgca tccggagaac
     1921 atgatgtttc tgaaacagga tacgtttaat tatgaaaaac agtccgtggt gctcagtgag
     1981 ctgtccgggc tgcagagaat tgaatatctg acgtttgttc agcagcgaac ggcaaagttt
     2041 gatgcacagg agggagaact gccggaggct gaacgacaga ttgcttttct gcgtatggga
     2101 atggatatca atgcctggct ggtttcccgc tcactgtgga atgctgagca gtctcaggat
     2161 gttgagacgc tttgcgcatc cattatgaca acatggtcgt atgatgcgct gggcgcgggg
     2221 gcggagaggg ttctgtcgct gagcggtatg gggaccattg agaatgccgg ggatgatgat
     2281 catgaggcgc tgacgccgga aaagtcctga cgcgggaaat gcagtttgtc atgcggcttg
     2341 cccgggagtt ccggcgggca gactggcggc ggatgctgtc ggaaatgtcg gccactgagc
     2401 ttggtgaggg ggcgattatt tccggatgca gagcttcagt gatgtgtgga tggatgcgca
     2461 gtttgcctcg ctgaaggcat tgatcgtgag aatggtgtcc ggcagcagtg atgctgcggt
     2521 ggctgatttc agccttttac cggaagagaa cgggataccg gagcgaacgg acgaagaact
     2581 gatgcatctt ggggaaggta tttccggagg tgtgcgttat ggaccagata gccaacctgg
     2641 tcattgattt ggggattgat gcggcagagt ttaaaaatga aattccccgt atcaaaaacc
     2701 ttctgaatgg tgcagccggt gatgcagaac ggtcttctgc ccgtatgcag cgttttatgg
     2761 agcgtcagac tcaggcggcc cggcagacaa tgcatgcggc ttcttcggct gcaacagcag
     2821 catcagccca tgcgcagacg gtggagaaga atgcacgggc tcatgaacgc atggcccgtg
     2881 aggtggaaca aacccgtctg cgcgtggatg ccctgaatca gaaaatgcgc gaggaacagg
     2941 cgcaggccag ggcactggcg gaggcgcagg ataaagcggc tgccgccttt tatcgccaga
     3001 ttgacagtgt gaaacaggcc ggtgcggggc ttcaggaatt acagcgtatt cagcagcaga
     3061 tccgacaggc cagaaacagt ggcggggttg gtcagcagga ttatctggcg ctgatttcgg
     3121 agatcacggc gaaaacccgt gccctgacgc aggcagagga acaggccacc cggcagaaag
     3181 cggcgtttat ccgccagctt aaagagcagg caacccgcca gaatctgtcg tcttctgagt
     3241 tgcttcgcgc cagggcggct cagctggggg taagcagtgc tgcagaagtg tatatccgca
     3301 aaatggagcg ggcaggaaaa gccacacatt cgctggggct gaaaagtgcg gcagcccggc
     3361 gggagctggg ggtgttaatc agtcagatgg cgcgcggcaa ttttggtgcg ctgaggggat
     3421 ccgggataac gctggctaac cgtgccggat ggacaggcgc actgatgtcg ccgaaaggca
     3481 tgatgactgg cggcgttatt ggcggacttg tcgcggcggt cctgggtctg ggtaaagcct
     3541 ggcatgacgg ccggaaggag ggcgaggaat ttaaccgtca gctggcgctg acgggacatt
     3601 atgccggtgt cactgtcggg cagttgtgga aactcagccg ggccatatcc gggaatggta
     3661 tcacgcaaca tgcggcagcc ggtgcgctgg cacaggtggt gggcagtggg gcatttcatg
     3721 gaaacgatat tggtatggtg gcgaaagctg ccgcacagat ggagcgatcg gttggccagt
     3781 cggtcagcga taccataaat cagtttaagc ggctgaagga tgatcctgta aatgccgcga
     3841 aggcgctgga caatgcgctg cattttttga ctgccactca gcttgagcag atacgcgtcc
     3901 ttggggagca ggggcggtcc agtgatgcgg cccggatcgc catgtctgcg ctggcagagg
     3961 aaaccggtaa acgcacatct gatattgata ataatctcaa tgcgctgggt agtacgctgc
     4021 aaaccttgtc tgactggtgg aagcagttct gggatgcggc catgaatatt ggtcgtgaag
     4081 actcgctgga tgcgcagatt gatgcgttac aggaaaaaat tcagcgcgcg aaaaaatatc
     4141 cgtggacaaa cgcctccaca caggtggagt acgatcagca gcgtcttaac gatcttcagg
     4201 agaaaaaacg ccggaaggat ttgcaggatg caaaagcgca ggcagaacgg aattaccagg
     4261 agcaacagaa acgccggaat gctgaaaatg ccgcgctgaa ccggatgaat gaaacggaag
     4321 ctgcacgaca tcagcgggaa attgcgcgta ttaatgccat gcagtacgcc gaccaggctg
     4381 tcagggatgc ggcgatacag cgtgaaaatg aacgttacga aaaagccatt aagaaaaata
     4441 cacgggcaac ccgtaatgat gaggccaccc ggttattgct gcagtacagt cagcagcagg
     4501 cacaggtgga agggcagatt gctgctgcca gacagtcagc aggcattgcc actgaaagga
     4561 tgactgaagc gcataaacag cttctggccc tgcagcagcg catcagcgac ctggacggga
     4621 aaaagctgac ggcagatgaa aagagtgtgc tggcccgtaa gaatgagctg attcaggcgc
     4681 tgacgctgct ggatgtgaaa cagcaggagc tgcagaaaca gacagcgctt aacgacctga
     4741 gaaaaaaaac ggttcagctg accagccagc tggcagacaa agaacgtgca ctgcgtgagc
     4801 agcacaatct ggatattgcc actgcaggta tgggggataa gcagcggcag cgctaccagg
     4861 cacagttgcg catccggcag gaataccggc aacagttgca acagcttgag aatgacagtc
     4921 gccagaaagg cacttacggg acggaggact accggagggc tgaggaggtg ctgaagggga
     4981 gcctgaagcg acaactgaat gaaaacaaac gctactggca ggaactggaa gtggcgcagg
     5041 gcgactggaa aaacggtgcc atgcgggcgt ttcagaattt tacggcggat gcggataatg
     5101 cggtgggaac ggcagaacag atgtttacag tggcattcag cagtgccggt aatgcactgg
     5161 cgacattctg taccaccggt aagctgaatt ttaaatcctt cacctcttcc ctgttgtcag
     5221 atatggccag aattatggca cagatggcca tgatgcaggc ggtaaagggc gtcggctctt
     5281 tattcggctt cacgactaat gctgatggcg gtgtttacca gtctgctgat ttgagtcgct
     5341 acagtggcac ggtggttaac cgtccgacgt tttttgcttt tgcaaaaggc gcgggtgtga
     5401 tgggggaagc gggacctgaa gccattctgc cactgcgtcg cggtgctgat ggtaagctgg
     5461 gggttgtggc ggatactggt ggttcaggca tggtgatgtt tgccccgcag tacaacatcg
     5521 ggatcaataa cgacggcacg aacgggcaga taggtccggc agcactgaag gtggtttatg
     5581 acctcgggaa aaaagcggcc gcggacttta tgcaacagca ggcccgtgat ggtggccggt
     5641 taagtggagc ataccggtaa tggagacgtt tcgctggaag gtgcgcccgg atatgaatgt
     5701 ggtatcagag ccaaaagtgg tggcagtgaa gctgggtgat ggttatgaac agcgtcgccc
     5761 ggcgggactg aataatctgc tgtcgactta cagcgtgacg atacgtgttc gtaaaggtga
     5821 acacccacct ttaaaagcct ttctggaacg gcacggtggc gtccgcgcat ttcagtggac
     5881 gccaccttat gactggaaac cgatcagggt ggcttgtcgt aaatggtcgg caagcgtggg
     5941 ggcgttatgg gtgactgtaa cggccgattt tgaacaggtg gtgaactgat gcaggatatc
     6001 cggcaggaaa cactgaatga atgcacccgt gcggagcagt cggccagcgt ggtgctctgg
     6061 gaaatcgacc tgacagaggt cggtggagaa cgttattttt tctgtaatga gcagaacgaa
     6121 aaaggtgagc cggtcacctg gcaggggcga cagtatcagc cgtatcccat tcagggggag
     6181 tggttttgaa ctgaatggca aaggcaccag tacgcgcccc acgct
//
LOCUS       DAJVUP010000204         6187 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.204, whole genome shotgun sequence.
ACCESSION   DAJVUP010000204 DAJVUP010000000
VERSION     DAJVUP010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6187
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.204"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            144..347
                     /locus_tag="OQQ75_003860"
     CDS             144..347
                     /locus_tag="OQQ75_003860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AaeX family protein"
                     /protein_id="HCS1978012.1"
                     /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFV
                     WHPALFNTALYCCLFYLISRLFV"
     gene            355..1287
                     /gene="aaeA"
                     /locus_tag="OQQ75_003861"
                     /pseudo
     CDS             355..1287
                     /gene="aaeA"
                     /locus_tag="OQQ75_003861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417708.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeA"
     gene            1293..3260
                     /gene="aaeB"
                     /locus_tag="OQQ75_003862"
     CDS             1293..3260
                     /gene="aaeB"
                     /locus_tag="OQQ75_003862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeB"
                     /protein_id="HCS1978013.1"
                     /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA
                     IVAAGPAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW
                     AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA
                     IIADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTGLQ
                     GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT
                     PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE
                     EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS
                     LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE
                     VQQRLLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR
                     DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM
                     IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK
                     LRIWQAPPQVTEPVHRLAGMLHKYQHALTDS"
     gene            3352..3624
                     /locus_tag="OQQ75_003863"
     CDS             3352..3624
                     /locus_tag="OQQ75_003863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HCS1978014.1"
                     /translation="MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN
                     DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH"
     gene            complement(3680..3943)
                     /gene="yhcN"
                     /locus_tag="OQQ75_003864"
     CDS             complement(3680..3943)
                     /gene="yhcN"
                     /locus_tag="OQQ75_003864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417705.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HCS1978015.1"
                     /translation="MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSG
                     VASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK"
     gene            complement(4309..4779)
                     /gene="argR"
                     /locus_tag="OQQ75_003865"
     CDS             complement(4309..4779)
                     /gene="argR"
                     /locus_tag="OQQ75_003865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HCS1978016.1"
                     /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP
                     GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL"
     gene            5214..6152
                     /gene="mdh"
                     /locus_tag="OQQ75_003866"
     CDS             5214..6152
                     /gene="mdh"
                     /locus_tag="OQQ75_003866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000861594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS1978017.1"
                     /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV
                     DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV
                     QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE
                     LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE
                     ERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK"
BASE COUNT         1512 a         1439 c         1599 g         1637 t
ORIGIN      
        1 tagataacag cataacagtt acgctaatat attaaatatc aatctacagc aatgttgctc
       61 tcgcccggct ttccatgccc ttctctgcgg cgacagatgc tgaaaataat aacgcctgct
      121 ctctctatac aaccaaggtc aacatgagtc tgtttcccgt tatcgtggtg tttgggctgt
      181 ccttcccacc gatatttttt gaattgcttt tatcactggc gattttctgg ctggtgcgcc
      241 gggtacttgt gccaacaggt atctacgact ttgtctggca tccggcgttg ttcaacaccg
      301 cgctctattg ctgcttgttt tatttgatat cgcgactgtt cgtttgaggt tgaagtgaaa
      361 acactaataa gaaaattctc ccgtacggcc atcacggtcg tattagtcat tctggccttc
      421 atcgcaattt ttaatgcctg ggtctattac accgaatccc cctggacgcg tgacgcgcgc
      481 tttagcgctg acgtcattgc gatcgcgccg gacgtttctg gactcattac ccaggtgaat
      541 gttcatgata accagctggt gaaaaaagga cagatactgt tcaccatcga ccagccgcgc
      601 tatcaaaagg cgcttgagga agcgcaagcc gatgttgctt attatcaggt actggcacag
      661 gagaaacgcc aggaggccgg acgtcgtaac cgtctcggtg tgcaggcgat gtctcgcgaa
      721 gagatcgact aggctaacaa cgtactacaa acggttctgc atcagttagc gaaagcgcag
      781 gcgacccgcg atctggcaaa actggatctt gaacgcacgg tgatccgcgc gccagcagat
      841 ggctgggtga ccaacctcaa cgtctatacc ggtgagttta ttactcgagg atcaacggcg
      901 gttgcgctgg tgaaacagaa ctccttctat gtactggcct atatggaaga aactaagctg
      961 gaaggggtgc gtccggggta tcgtgcagag atcacgccgc ttggcagtaa caaagtgctg
     1021 aaagggactg ttgatagtgt tgccgcaggg gtcaccaacg ccagcagcac gcgtgacgac
     1081 aaagggatgg cgactataga ctctaacctt gaatgggtgc gtcttgcgca acgtgttccg
     1141 gttcgtattc gtctcgacaa ccagcaagag aacatctggc ctgcgggcac cactgctaca
     1201 gtggtggtca ctggcaaaca agatcgcgac gaaagccagg attcgttctt ccgtaaaatg
     1261 gcccatcgcc tgcgtgagtt tggttaatca cgatgggtat tttctccatt gctaaccaac
     1321 atattcgctt tgcggtaaaa ctggcgaccg ccattgtact ggcgctgttt gttggctttc
     1381 acttccagct ggaaacgcca cgctgggcgg tactgacagc ggcgattgtt gccgccggtc
     1441 cggcctttgc tgcgggaggt gaaccgtatt ctggcgctat tcgttatcgt ggctttttgc
     1501 gcatcatcgg cacatttatt ggctgtattg ccggactggt gatcatcatt gcgatgatcc
     1561 gcgcaccatt attgatgatt ctggtgtgct gtatctgggc cggtttttgt acctggatat
     1621 cctcgctggt acgaatagaa aactcgtacg cgtgggggct ggccggttat accgcgctga
     1681 tcattgtgat caccattcag ccggaaccat tgcttacgcc gcagtttgcc gtcgaacgtt
     1741 gtagcgagat cgttatcggt attgtgtgtg cgattatagc ggatttgctc ttttctccgc
     1801 gatcgatcaa acaagaagtg gatcgagagc tggaaagttt gctggtcgcg caatatcaat
     1861 taatgcaact ctgtatcaag catggcgatg gtgaagttgt cgataaagcc tggggcgacc
     1921 tggtgcgacg caccacgggg ctacaaggca tgcgcagcaa cctgaatatg gaatcttccc
     1981 gctgggcgcg ggccaatcga cgtttaaaag cgatcaatac gctatcgctg acgctgatta
     2041 cccaatcctg cgaaacttat cttattcaga atacgcgccc ggaattgatc actgatactt
     2101 tccgcgaatt ttttgacacg ccggtagaaa ccgcgcagga cgtccacaag cagctcaaac
     2161 gcctgcggag agttatcgcc tggaccgggg aacgggaaac gcctgtcacc atttatagct
     2221 gggtcgcggc ggcaacgcgt tatcagcttc tcaagcgcgg cgttatcagt aacacaaaaa
     2281 tcaacgccac cgaagaagag atcctgcaag gcgaaccgga agtcaaagta gagtcagccg
     2341 aacgtcatca tgcgatggtt aacttctggc gaaccacact ttcctgcatt ctgggcacgc
     2401 ttttctggct gtggacgggc tggacttccg gcagtggtgc aatggtgatg attgcggtag
     2461 tgacgtcact ggcaatgcgt ttgccgaatc cacgcatggt ggcgatcgac tttatctacg
     2521 ggacgctggc cgcgctgccg ttagggctgc tctacttttt ggtgattatc cctaataccc
     2581 aacagagcat gttgctgctg tgtattagcc tggcagtgct gggatttttc ctcggtatag
     2641 aagtacagca acggctactg ggctcgatgg gggcgctggc cagcaccata aatattatcg
     2701 tgctggataa cccgatgact ttccatttca gtcagtttct cgacagcgca ttagggcaaa
     2761 tcgtcggctg tgtgctcgcg ttcaccgtta ttttgcttgt gcgggataaa tcgcgcgaca
     2821 ggaccggacg tgtactgctt aatcagtttg tttctgccgc tgtttccgcg atgactacca
     2881 atgtggcacg tcgtaaagag aaccacctcc cggcacttta tcagcagctg tttttgctga
     2941 tgaataagtt cccaggggat ttgccgaaat ttcgcctggc gctgacgatg attatcgcgc
     3001 accagcgcct gcgtgatgcg ccgatcccgg ttaacgagga tttatcggcg tttcaccgac
     3061 aaatgcgccg cacagcagac catgtgatat ctgcccgtag cgatgataaa cgtcgtcggt
     3121 actttggcca gttgctggaa gaacttgaaa tctaccagga aaagctacgc atctggcaag
     3181 cgccaccgca ggtgacggaa ccggttcatc ggctggcggg tatgctccat aagtatcaac
     3241 atgcgttgac cgatagttag gtcaaaacca acgccaaaag tgtcggtttt ttcatggcta
     3301 tacttagcga tgcacggcag aactcgccgc gaaacgtgac ggtggcaata gatgaatatt
     3361 tatacctttg attttgatga gattgagagt caggaggatt tttatcgtga ctttagccaa
     3421 acctttggtc tggcgaaaga taaggtacgc gatctcgact cactatggga tgtgttaatg
     3481 aacgatgtcc tgccgctacc acttgagatt gaatttgttc atctgggaga gaaaacgcgt
     3541 cgccgttttg gcgcgttaat attgctgttt gatgaggcag aggaagagct ggaagggcat
     3601 ttgcgtttta atgttcgtca ttagcgcaaa aaaaagcccc cgaaccgggg gcaatatcgt
     3661 cggacaagac gatgagggtt tatttgtaca gttcagccgt agcgtgccag gtgtcaccgc
     3721 tacgagcttc agtaatctgg taggccgttg cgcctttctc ttccgctttt ttgttcagca
     3781 tttcacgcat atccattggc gaagacgcca caccacttac ggatacggtc ccgattgctt
     3841 cacgattttg tgcttgtgca gcatcaatgg agtcggcagc gaatgcaccg aaagagagaa
     3901 cagaaagtac gcttaatgca gctacagtgg ttttgatttt catgattttt acctcgacat
     3961 aatcttttag ctgggccttt gttttgtgac ccatatcaca aaatcaagca tacactaatt
     4021 attgaactaa ttaataccac gctaactgtt tcagttgata ctaagtgtta aaaatgtgaa
     4081 ttttaataac aaaaaagaat taaaaacacg gtcatttatt tttaattcta gtattttcaa
     4141 ttagataatg aattttgcat aatgtgcttt ttttaccgta tgtattcatt atgtgaatga
     4201 catgtcgcag taaaactgca ctattcgtta aattaatcgc aggggaaagc agggggttga
     4261 gagggataag caacattttc cccgccgcca gaagcgacgg ggcagagatt aaagctcctg
     4321 gtcgaacagc tctaaaatcg cttcgtacag gtctttgacg gtgaaaccgt tagcaggggt
     4381 ggtaaagatg gtgtcatcgc cagcgatggt gcccagaata ccttctgctt tgcccagtga
     4441 gtccagcagg cgagcaatta actgcgccgc gccagggctg gtatgaatca cgacaactgc
     4501 atcgttgtag tcgatatcca gcaccagatt cttcaatgga ctggaggtgg ttggtacacc
     4561 cagttcagct ggcaggcagt aaaccatttc cattttggca ttgcgtgtac gtacagcacc
     4621 aaacttggtc aacatccgcg agactttaga ctgattaata ttgtcaaagc cttgctcctg
     4681 caacgcggcg acgatttcgc cctgggagct aaatttctct tctttaagta atgctttaaa
     4741 tgctttaact agttcttctt gcttagccga gcttcgcata agtcacccga tatggtggtt
     4801 gatacaacat tattgtgcat acagatgaat ttttatgcaa acagtcaacc ctgaagaagg
     4861 ctgaaataat gttatgaaag agcgggattt tatcaaattt cgttattgag aaacatgcct
     4921 gcgtcacggc atgcaaattc tgcttaaaag taaattaatt gttatcaaat tgatgttgtt
     4981 ttggctgaac ggtagggtat attgtcacca cctgttggaa tgttgcgcta atgcataagc
     5041 gactgttaat tacgtaagtt aggttcctga ttacggcaat taaatgcata aacgctaaac
     5101 ttgcgtgact acacattctt gatatgtggt cattgtaaac ggcaattttg tggattaagg
     5161 tcgcggcagc ggagcaacat atcttagttt atcaatataa taaggagttt aggatgaaag
     5221 tcgcagtcct cggcgctgct ggcggtattg gccaggcgct tgcactactg ttaaaaaccc
     5281 aactgccttc aggttcagaa ctctctctgt atgatatcgc tccagtgact cccggtgtgg
     5341 ctgtcgatct gagccatatc cctactgctg tgaaaatcaa aggtttttct ggtgaagatg
     5401 cgactccggc gctggaaggc gcagatgtcg ttcttatctc tgcaggtgta gcgcgtaaac
     5461 cgggtatgga tcgttccgac ctgtttaacg ttaacgccgg catcgtgaaa aacctggtac
     5521 agcaagttgc gaaaacctgc ccgaaagcgt gcattggtat tatcactaac ccggttaaca
     5581 ccacagttgc aattgctgct gaagtgctga aaaaagccgg tgtttatgac aaaaacaaac
     5641 tgttcggcgt taccacgctg gatatcattc gttccaacac ctttgttgcg gaactgaaag
     5701 gcaaacagcc aggcgaagtt gaagtgccgg ttattggcgg tcactctggt gttaccattc
     5761 tgccgctgct gtcacaggtt cctggcgtta gttttaccga gcaggaagtg gctgatctga
     5821 ccaaacgtat ccagaacgcg ggtactgagg tggttgaagc gaaagccggt ggcgggtctg
     5881 caaccctgtc tatgggccag gcagctgcac gttttggtct gtctctggtt cgtgcactgc
     5941 agggcgaaca aggcgttgtc gaatgtgcct acgttgaagg cgacggtcag tacgcccgtt
     6001 tcttctctca accgctgctg ctgggtaaaa acggcgtgga agagcgtaaa tctatcggta
     6061 ccctgagcgc atttgaacag aacgcgctgg aaggtatgct ggatacgctc aagaaagata
     6121 tcgccctggg cgaagagttc gttaataagt aattgattag cgaataataa aaaaccggag
     6181 cacagac
//
LOCUS       DAJVUP010000205         6099 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.205, whole genome shotgun sequence.
ACCESSION   DAJVUP010000205 DAJVUP010000000
VERSION     DAJVUP010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6099
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.205"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..382)
                     /locus_tag="OQQ75_003867"
                     /pseudo
     CDS             complement(1..382)
                     /locus_tag="OQQ75_003867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151035092.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
     gene            complement(568..3876)
                     /gene="icsA"
                     /locus_tag="OQQ75_003868"
                     /gene_synonym="virG"
     CDS             complement(568..3876)
                     /gene="icsA"
                     /locus_tag="OQQ75_003868"
                     /gene_synonym="virG"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane autotransporter IcsA"
                     /protein_id="HCS1978018.1"
                     /translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
                     LGGPIAFAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
                     RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
                     DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
                     GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
                     LSIINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
                     SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
                     GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
                     VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
                     ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTA
                     GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
                     NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEITGHASGITYVAVTNEG
                     GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
                     NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
                     SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
                     TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
                     YMDAWLQYGWFNNTVKGDGFTGEKYSSKGITGALEAGYIYPTIRWTTHNNIDNALYLN
                     PQVQITRHGVKANDYIEHNGTMVTSSGVNNIQAKLGLRTSLISHSCIDKETLRKFEPF
                     LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
                     YRDTQGILGVKYTF"
     gene            4405..5607
                     /gene="virA"
                     /locus_tag="OQQ75_003869"
     CDS             4405..5607
                     /gene="virA"
                     /locus_tag="OQQ75_003869"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858314.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-tubulin-specific protease"
                     /protein_id="HCS1978019.1"
                     /translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDVLLKIITFG
                     IYSPHETLAEKYSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
                     DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
                     CCTSIIPNDDYFPVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
                     LGINEFIDSKKELQMLSYNQLNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
                     AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
                     SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
                     FAIISPDV"
     gene            5786..6099
                     /locus_tag="OQQ75_003870"
                     /pseudo
     CDS             5786..6099
                     /locus_tag="OQQ75_003870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558238.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         1869 a         1385 c         1048 g         1797 t
ORIGIN      
        1 gcttccccat gtgatttgcc tcgccacttc accgggctca ggaccccgta ggatcttcac
       61 cgaaaaaaat gcatcaccag ttgctttatt atttgtttta ggtagacctg ttactaattt
      121 atacctactc tgaccaagtc tggataagaa aggcacacct gcacatttct acttggaaat
      181 gttttctttt accattttgc tcaaaaattt caacatccaa tattcctcgt acagaactac
      241 tcaagtcctg aatagaaaaa gttccagctg gtacagtaga gtcatatatt gctcgacctt
      301 gttgagatac aacaacacgt gcattagttt ctgcaatacc agtaatctga ggcgcataac
      361 cacgaatatt tggcggtagc attcgttcat cgctttctaa tgcaattcct gtgtaacgcc
      421 aagcaacagc gcattctggc gcatgatctg gtaaacacgt ttggcattga tcgcaggcat
      481 accatcatgt gcacaaaaac ccaccgagct tttacacggt gggtcccaga gaaatgcagg
      541 acatcaacac gccctgcatt tttattatca gaaggtatat ttcacaccca aaataccttg
      601 ggtgtctctg taactgttat tacccaattg ctgagatacg tttccccaga tgcttaggtt
      661 atctgcaaga cgccccccca caccagtttt gagttcaatc acattacggt tgcctatctg
      721 gtgatttgac atgccattca taattacacc atattgcttt gagctccatt tccaattcac
      781 ttccaaaaat ggttcgaact tacgaagagt ctccttatcg atacaactat gactaattaa
      841 ggatgtacgc aatcccaatt ttgcttgaat attattgacc ccagaggatg tgaccatagt
      901 gccattgtgt tcaatatagt cgtttgcttt taccccatgc ctagttatct ggacttgtgg
      961 attgagatac aatgcgttgt caatattatt atgagtagtc cagcgtatgg ttgggtagat
     1021 atagccagct tccaaagctc ctgttattcc tttgctggaa tatttctcac cagtaaaccc
     1081 atctcctttg actgtattat taaaccaacc gtactgcaac caagcatcca tatatagacc
     1141 tgttcgttct ttttcatcct gaaaccaaga actgtacaaa ccggcagtat aaccgctcac
     1201 agttcctcgt gaactataac tagtatactt attatgagtt ttgctatcct gatatccata
     1261 agctcccata atacccacat gcaagccatc atgatcagtg aagtttgtct tcaaaatatc
     1321 tccaccaatc tgataaacca tcctgttagc tgtggttttt aattgtctat cagctaaatt
     1381 atgctcatta tgtccaccaa cagtacgaat ccacatggtg gtttcgctga gctgacctgt
     1441 agtaggatca acaatagtgc taccgtgtcg gtcatagaga gaaggactaa acatcgtgtt
     1501 cattgctatc aggttagcaa tataactgcc agcttcaggg cgccatgtgt gaatactacc
     1561 ttcacccaaa ttaagtgaag atacaagctg tgaactagct cggcgactac tcatttgagt
     1621 agactcttga ttgctcatct gttttgattc ttgattatcc atctgactag ttagatacca
     1681 cttattggta ttcagtccag atacagtgcc ctgtttcagg cgatagtcat aactaccagc
     1741 aacaatacgg cctttctgaa taaaagcatt cttatcagaa gaatctgtcg aaataatttg
     1801 aacaccttca agagttttat ctccagagcc tccctcattt gtcactgcaa cataggtaat
     1861 accagacgca tggcctgtaa tttccagccg gtcagtttta ctgttgtcat tgccgagaac
     1921 cgcgcccaaa gataatattc cgccctttcc atgccaatta cctttctgaa cataggtctg
     1981 accgacattt gacgaactat tattgagaat aacatgaccg tttttctcca gagtcatgtt
     2041 acctgtgaca atgacggggt caggcaaaaa aggggcatta atattattga ttagcacagt
     2101 cccactattt aataaagtgt taacagtttg gttcatgcct gaaaaattca aggtagcacc
     2161 tttattaaca ataacaccag cggtacgtgt catagcttca actgtcccca tttttagaat
     2221 gcctgcattg atgttggtga aaccagagta ggtatttttt tccgccaaaa tgagagttcc
     2281 ctcccctgat tttgttaggg attttccgtc ccagctattt atattatgat ggctgagatt
     2341 atctgccaga atagtactaa cagtaagttc agcgttttct ttcagattga actctccatg
     2401 actgtcgcca tctgtatcat tccagctcaa accgtagatc aatttattct ggtcactgat
     2461 atagcttttt gtatagtcaa tagcaccagt agtgagtaac ggattgatga tagatatatt
     2521 agaaacactg aaacctgtta tccctttatc tgcacttagc agtttatagt ccttctgcgc
     2581 ccagttattt ataatagctt ccacttttac attgttgcca aatgacatat ttccagaagc
     2641 ttccagacta ctgattccag ctaaatttaa agaactgttc tcaccaaaag aaacgtcacc
     2701 tgaaacagtg aatttgttac ctgatagtga aacagttgta caatcaccag cacataaatc
     2761 accttcaata gttggtgtgg tcccagtgta atcattgttg ataattttca gaatggatga
     2821 attgttaacc tgtacatcac cagtaatgac agaaccttca tggagtatta atgaattgtt
     2881 tccaccagtg atgtggatag cattacctgc tacattttgt gttccatcat cttctttacc
     2941 tgaaattata tatccgctat tagcaatggt catattgcta ccatttatag catcccccca
     3001 atgtccacca ttaccgccta aaatagctcc attgttgatt atagacaggt tatctcctgt
     3061 gatagcatta ccaccgtagc catcataacc ataaccgtaa gcagcacctc cgttgcctcc
     3121 agcgaacgtg cccttattga ttacagagag gctgcttcct gtgatggcat cacctccatt
     3181 accgccatca ccctcaccat aattgttacc tccattacca ccggaaatag tccctttgtt
     3241 gattatgggt agattgactc ctgtgacggc atcacctcca ttccccccat cactatcact
     3301 ataactatcg ccaccatgtc cacctgaaat aatttctcca tttattataa acagattgtc
     3361 tcctgtaaca gcctcaccac catcaccgtt atggtcagca ccgctaccgc cgctaccacc
     3421 aagaatcatg ccttgattga ttatagacaa gtcagatccg gtaatagagt caccaccatt
     3481 accgccacaa ctattaccat cattattatc accagcacca ccatgacctg cgctaatcat
     3541 aatatcagag ttaatccgta gcttagttct agatgcatga gaggggttgg aagaagttat
     3601 ataccacgca tccattccat cttcaccagc tcccaaggga gaaagtccat caacaggtgt
     3661 taataatttt tcataattgt cctctgaaaa atgaagttct tgagtacccg aaagaggaat
     3721 agcaaaagct attggccccc cgagcaacag ggatgcacca acaacaaaag gagaaaaaga
     3781 caatttgcat gttttttcct ttaccgtagg taattctccg gcccccccct gtgaacattg
     3841 ggtcatatta caaaaaaatt tgtgaatttg attcatgcac tatattatca gtaagtggtt
     3901 gataaacccc taaaaagatt ccgttttatc cggaataaag ggacgatata tgcaaaaaca
     3961 tattaaacaa agcctcaacc aaaacatgag agctgtgtta tatatcaatg caacgggaga
     4021 aatttacctg tgtcttgctt tgaaaaaaag agggggaaag ctatatgttc gataataaat
     4081 taataatttt actatgatag tctgcttcag accgcaactt ttcagttctt tctgtacgct
     4141 tgcccaaagt ttaaccactt tgtttttcta tacacccaat ggttctatct gccccttgat
     4201 gttaatcccc aaagccaata acatgaatgt attcatatca caactttcct accagactct
     4261 ccaatgcaat aactgcataa ttgtttttag tggaaatgta tcgttttctt aaagagaaga
     4321 ataacattcc attttattat gttcccaatt taattatatt aatatatatt ggcatcaata
     4381 ggaaaataca tcaggagaaa tcaaatgcag acatcaaaca taactaacca tgaaagaaat
     4441 gactcatcat ggatgtcaac tgtcaaatca actacagaag taagttggaa taaattgagt
     4501 ttttgtgacg ttttactgaa aataataact ttcggaatat attctccaca cgaaactcta
     4561 gccgaaaaat atagcgaaaa aaaactaatg gatagtttct caccatcact atcacaagat
     4621 aaaatggacg gagagtttgc ccacgcaaac atagatggca tttcaatacg gctatgcctt
     4681 aacaaaggca tatgttcggt tttttatctt gatggagata aaatacaatc cactcaactt
     4741 tcatcaaaag aatataataa cttgttaagt tcactccccc ccaaacaatt caacttagga
     4801 aaagtacata ctattacagc tccggtatca gggaatttta aaactcacaa gcctgcacca
     4861 gaagttattg aaacagccat taattgctgt acatcgataa taccaaacga tgattacttc
     4921 cccgttaaag acactgattt taatagtgtt tggcatgata tttacagaga tattcgagca
     4981 tctgacagca atagtacaaa aatatatttc aacaatattg aaataccact aaaattaatt
     5041 gcagatctaa ttaatgagtt aggaattaat gaattcattg atagcaaaaa agagcttcaa
     5101 atgctaagtt acaaccaatt aaataaaata atcaattcaa acttccccca acaagaccta
     5161 tgttttcaaa cagaaaaact tttgtttact tcactctttc aagaccctgc atttatatcc
     5221 gcactaacat ctgcattctg gcaatctctt cacatcacgt cttcctctgt ggaacacata
     5281 tatgcccaaa ttatgtccga aaacatagaa aacaggctta atttcatgcc tgaacaacga
     5341 gttattaaca attgtggaca tattataaaa atcaacgcag ttgtccctaa aaacgacact
     5401 gcaatctctg cctctggggg gagggcttac gaagttagct catcaatatt accatcgcac
     5461 ataacatgta atggtgttgg tattaataaa atagaaacaa gctatctcgt tcatgctgga
     5521 acacttccaa gcagtgaagg gcttcgcaat gctatccctc cagaaagtcg tcaagtatca
     5581 tttgccatca tatctcctga tgtttaagcc aatattatat tggctgccag actgtaaaaa
     5641 aacgttcttc agaacagctc tataaactat taaaccaaag ctaaaaggat ggggaccaat
     5701 agaatctcag cccatccttt ttatatcatt atgaaccgcc ccggaaatcc tggagactaa
     5761 actccctgag aaagaggtaa acaggatgac taaaaataca cgtttttccc ctgaagtccg
     5821 tcaacgggca gttcgtatgg ttctggaaag tcagggcgaa tatgactcac aatgggcagc
     5881 gatttgttcc attgctccaa agattggctg tatactggag actctgcgtg tctgggtacg
     5941 ccagcatgag cgggataccg ggggcggtga ggtaggctca ccaccgctga acgtcagcgt
     6001 ctgaaagagc cggaacgtga aaatcgtgaa ctgcgccgca gtaacaatat ccttcgcctg
     6061 gcttccgctt attttgcaaa ggcggagttc gaccgcctc
//
LOCUS       DAJVUP010000206         6096 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.206, whole genome shotgun sequence.
ACCESSION   DAJVUP010000206 DAJVUP010000000
VERSION     DAJVUP010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6096
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.206"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            6..1466
                     /locus_tag="OQQ75_003871"
     CDS             6..1466
                     /locus_tag="OQQ75_003871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS1978020.1"
                     /translation="MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADIL
                     ATEHFSDWGYYKVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQM
                     DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATG
                     VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAKAVDVKLAQWIEDNVTFP
                     STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE
                     LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAP
                     TLKVQGVDLQDYANRLIERYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF
                     DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF
                     GDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK"
     gene            complement(1502..1705)
                     /gene="ydfZ"
                     /locus_tag="OQQ75_003872"
     CDS             complement(1502..1705)
                     /gene="ydfZ"
                     /locus_tag="OQQ75_003872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium delivery protein YdfZ"
                     /protein_id="HCS1978021.1"
                     /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG
                     KTVVVEGCEEKLAPLDLIRLGMN"
     gene            complement(1702..2568)
                     /locus_tag="OQQ75_003873"
     CDS             complement(1702..2568)
                     /locus_tag="OQQ75_003873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005005969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1978022.1"
                     /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVR
                     FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAA
                     SMITESQCYQLEQNLHQQRIAIEHKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLK
                     ATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVARSA
                     RKTATGLAKSNSFTLIPSGMRGFSPRLTAHACIKKDVSLIKNKKYFTRQEYLYCARYV
                     GFDCKSERRKHL"
     gene            complement(2657..3403)
                     /gene="ydfG"
                     /locus_tag="OQQ75_003874"
     CDS             complement(2657..3403)
                     /gene="ydfG"
                     /locus_tag="OQQ75_003874"
                     /EC_number="1.1.1.298"
                     /EC_number="1.1.1.381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional NADP-dependent 3-hydroxy acid
                     dehydrogenase/3-hydroxypropionate dehydrogenase YdfG"
                     /protein_id="HCS1978023.1"
                     /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL
                     GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM
                     IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN
                     LRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW
                     VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ"
     gene            3540..5585
                     /gene="dcp"
                     /locus_tag="OQQ75_003875"
     CDS             3540..5585
                     /gene="dcp"
                     /locus_tag="OQQ75_003875"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707439.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HCS1978024.1"
                     /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA
                     AIALNPQTPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL
                     ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV
                     LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL
                     IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLL
                     GFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP
                     WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH
                     PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQ
                     KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW
                     ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE
                     NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD
                     GYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLYRQWRGKAPQIMPMLQHRGLNI"
     gene            complement(5630..>6096)
                     /locus_tag="OQQ75_003876"
     CDS             complement(5630..>6096)
                     /locus_tag="OQQ75_003876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HCS1978025.1"
                     /translation="NLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGA
                     GFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGLE
                     GGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAVRFAHVQLLQLLL"
BASE COUNT         1514 a         1465 c         1576 g         1541 t
ORIGIN      
        1 ttgttatggg aaataatttg ttatcagcaa aagcgacact ccctgtttat gatcgtaata
       61 acctggcccc aagaattgtt catttaggct ttggtgcatt tcaccgtgcg catcagggcg
      121 tgtatgccga tattcttgct acagaacatt tcagtgactg gggatattat aaggtcaact
      181 taatcggcgg cgaacagcaa attgccgatt tacaacagca agataatctt tataccgttg
      241 cggaaatgtc ggccgatgcg tggacggctc gcgtcgttgg cgtcgttaaa aaagccttgc
      301 acgtacagat ggatggctta gaaaccgtgt tggctgcgat gtgtgaaccg caaatcgcga
      361 ttgtctctct gacaatcacc gaaaaagggt atttccactc tccggcgacc ggacagttaa
      421 tgctcgatca cccgatggtc gctgccgacg tgcaaaatcc ccaccagccg aaaacagcaa
      481 caggggtgat tgttgaggcg ctggcccgcc gtaaagcggc aggacttccc gcatttaccg
      541 tcatgtcatg tgacaacatg ccagaaaacg gtcatgttat gcgtgacgtt gtcacttcat
      601 acgcgaaagc tgttgatgta aaactggcac aatggatcga agataacgtg actttcccat
      661 caacaatggt ggaccgtatt gtgcccgcag tgacagagga tacgctggcg aaaatcgaac
      721 aacttaccgg tgtgcgcgat cctgcgggcg ttgcctgtga acctttccgc cagtgggtaa
      781 tagaagataa ctttgttgcc ggacgtccag aatgggaaaa agcgggagcc gaactggtta
      841 gtgatgtgct gccttatgaa gagatgaagt tgcgcatgct caacggcagt cattcattcc
      901 tggcgtattt gggttatctt gccggatatc agcacattaa tgactgcatg gaagatgaac
      961 attatcgtta tgcggcgtat ggcttgatgt tgcaggaaca agcgccgacg ctgaaagtgc
     1021 agggcgttga tttgcaagat tacgctaacc gattaattga acgctatagc aatccggcgt
     1081 tacgtcatcg aacctggcag attgcgatgg atggtagcca gaaattgcca cagcggatgt
     1141 tggattctgt tcgctggcat ctggcgcatg acagcaagtt cgatctgctg gcgctgggcg
     1201 tcgcgggttg gatgcgttat gtcggtggtg ttgatgaaca gggaaatccg atagaaatca
     1261 gtgacccact gttacctgtt attcagaagg ctgtacaaag tagtgccgaa gggaaagcgc
     1321 gcgtccagtc attgctggcg attaaggcaa tctttggtga tgatttgcca gacaatagct
     1381 tgtttactgc aaaagtgacg gaagcgtact tgtctttatt agcgcatggc gcgaaagcga
     1441 ccgtggcgaa atattccgtg aagtaaaaaa agcaatgccg ccatcggcgg cattcacaca
     1501 cttagttcat gccgagacga atcaggtcca gaggtgccag tttctcttca caaccttcaa
     1561 caactacggt ttttccgcgg cggatttgct cagcggtcag accttcagta tcaatcgaca
     1621 ggatcttgcc agtgtgaccg gtgccgctaa ccataacacg gctgccagtg gtgattgcgt
     1681 tacggttacg atcgtaggtc gtcataggtg ttttctcctt tctgatttac agtcgaagcc
     1741 cacgtaacgg gcgcaatata aatactcctg tcgagtgaaa tattttttgt ttttgatcaa
     1801 gctcacatct tttttgatgc atgcatgagc cgtaaggcgg ggggaaaagc ctctcatccc
     1861 ggatgggatg agagtaaatg aattactctt cgctaaacca gtcgctgttt tcctggcgga
     1921 tctggccacg gattcgctga tttcctgcaa atgttgcgtc attgcacgtt ctaccgcatc
     1981 gccatcacgt ttttgcaggg cagagaaaat atcaagatgc tggcgtaaca gcatttctgg
     2041 tggagaaaca tggtcgaaac tcatatagcg cacgcgatca acggtcgctt tcaggttctc
     2101 aatggtatcc cacgccagtt gacagtcggc aatctgcgtc aggagttgat ggaagttgtc
     2161 atcaagttca aaaaaatcat ccagttgctt gtgctcaatg gcaatgcgtt gctggtgaag
     2221 attttgttcc agttggtagc actggctttc ggtaatcatg ctcgccgccc gacgcgccac
     2281 cgcgcactca atggcctgac ggataaaact gccgttgcgc acctgggcca tggaaatttt
     2341 gttgacgtag ctgccacgct gtggacgaat ttgaatcagg ccgttttccg ccagtttaat
     2401 aaaggcttca cgaaccggct ggcgtgacac attgaaacga acagaaactt ctttttccga
     2461 caacggtgtg cctggagcaa tcaggcaatg gacaatgtcg cgacgaagga tacgataaat
     2521 ttgctgattg acaggctgtg tgggattaag ttgcgtttcg acggtcattc gttcttgctt
     2581 gtgagtgagt taactgcatg agtctaccac ttttttgtga caagcaataa cccggcagtt
     2641 acgccgggta taaaaattac tgacggtgga cattcagtcc ggcatagctt tgggtaaccg
     2701 gcatcatttc cagggtattg atattgacgt gagcaggcag cgttgacacc caccaaacgg
     2761 cttcgctgac atcttctggc gtcaatgcaa cggtattttg ataggttttt tccgctttac
     2821 cgtcatcgcc tttaaagcgg acattggaaa actcggtgcc acccaccaga cccggttcga
     2881 tgtcggtgac gcgcaccgcc gtaccatgca ggtccgtacg cagattcagg ctaaactgac
     2941 gaacaaacgc tttcgtcgca ccgtaaacgt taccaccggc ataaggccag ctacctgccg
     3001 ttgagccaat gttaataata tgaccatgat tacgttcaac catacccggt aagacggcgc
     3061 gcgtcatata taccaggcct ttgttgttgg tatcaatcat cgtttcccag tcttcaacgc
     3121 tggctttatg cgcaggctcc atgcccaacg ccaggccggc attatttacc aggatatcaa
     3181 tattgcacca ctcggcagga agcgatgcca gcatctcttc aatagcggcg cggttgcgaa
     3241 cgtccagttg ggcgatgtac agattatctc ccagttcgtc ttttaactcc tgcaaccgtt
     3301 cctggcgacg gccagtggcg ataactttat gcccttgttg aataaaacga cgagtaatgc
     3361 attcaccaaa acctgccgtt gctccagtta ctaaaacgat catctcactg ttcctcaacg
     3421 cttttgtgtg tcaataacat agcacgtgat gcttaagagc gggtaatact ggtttgtaag
     3481 attgcactcc gttatcagta agcctacgct atggaacacc tcgcgttcag gagaagaaaa
     3541 tgacaacaat gaatcctttc cttgtgcaaa gcacactacc gtatctggct ccccattttg
     3601 atcaaattgc caatcatcac tatcgcccgg cattcgatga gggaatgcag caaaagcggg
     3661 cagaaattgc tgccatcgcg cttaacccgc aaacgcctga tttcaacaat actattctgg
     3721 cactggaaca aagcggagaa ttacttaccc gcgttaccag cgtctttttt gcgatgactg
     3781 cggcgcatac caatgatgaa ttacagcgtc ttgatgaaca gttttccgct gaactggcgg
     3841 aactggctaa tgatatctat ctgaacggtg aattattcgc gcgggtagat gctgtctggc
     3901 agcgccgtga atccctgggg cttgatagtg aatccatccg cctggtggag gtgattcatc
     3961 aacgttttgt ccttgccgga gccaaacttg cgcaagctga taaagcaaaa ttaaaagtac
     4021 tgaatacaga agctgcgacc ctgaccagcc agtttaacca gcgattactg gcagcaaata
     4081 aatccggcgg tctggttgtg aacgatatcg cgcagctggc aggaatgagt gagcaagaga
     4141 ttgcgctggc ggcagaggcg gctcgcgaga aaggtctgga taacaaatgg ctgattccgc
     4201 tgctgaatac cacccaacaa ccggcgcttg ccgagatgcg cgatcgtgcg acgcgtgaaa
     4261 aactgtttat tgcgggctgg acgcgagcgg aaaaaaatga tgccaatgat acccgcgcta
     4321 tcattcaacg tctggtagag attcgcgcac agcaggcgaa actgcttggt tttcctcatt
     4381 atgccgcatg gaaaatcgcc gatcagatgg caaaaacgcc agaagcagca ctcaacttta
     4441 tgcgggaaat tgttccagcg gcgcgtcaac gtgctagcga tgaattagcc tccatacagg
     4501 cggttatcga taagcagcaa ggcgggttta gcgcgcagcc gtgggactgg gcattttatg
     4561 ccgaacaggt acggcgggag aaatttgatc ttgatgaggc gcagctcaag ccatattttg
     4621 aattaaacac ggtgttgaat gaaggtgtat tctggaccgc gaatcagctc ttcggtatta
     4681 agtttgtcga acgttttgat attcctgtct accatcctga cgttcgtgtg tgggaaattt
     4741 ttgatcataa tggcgtggga ctggcgttat tttacggtga tttcttcgcc cgtgattcaa
     4801 aaagcggcgg tgcatggatg ggcaattttg ttgagcaatc aacgcttaat gaaacgcatc
     4861 cggtaattta taacgtttgc aattatcaga aacccgctgc cggtgagcct gcgttgttac
     4921 tctgggatga tgtcataacc ttattccatg aatttggtca tacgctgcac ggcctttttg
     4981 cccgccagcg ttatgccacg ctttccggca ccaacacgcc gcgtgatttt gtcgaatttc
     5041 cgtcgcaaat caacgaacac tgggcaacgc atccgcaggt attcgctcgc tacgcccggc
     5101 attatcagag cggggcagca atgcctgacg aactgcaaca gaaaatgcgt aatgccagcc
     5161 tgttcaacaa agggtatgag atgagcgaac tgcttagcgc cgcacttctc gatatgcgct
     5221 ggcattgcct ggaagaaaac gaagcaatgc aggatgtcga tgattttgaa ttgcgggcgc
     5281 tggtggcgga aaatatggat cttcctgcta taccgccacg ctatcgcagc agttatttcg
     5341 cccatatttt tggtggcgga tatgctgcag gttattacgc ttatctgtgg acgcaaatgt
     5401 tggccgatga tgggtaccag tggtttgttg agcagggcgg attaacgcgt gaaaatgggc
     5461 agcgttttcg cgaggcgatc ctttccagag gtaacagcga agatctggaa cgcctgtatc
     5521 gacaatggcg cggtaaggct cctcagatta tgccgatgct gcaacatcgt ggcttgaata
     5581 tataaacacc accaatggct ggcctggaga tatcgccagg ccagcctggt tatagcagta
     5641 attgcagcag ctggacgtgg gcaaacctca ccgctaaagc taataccgtt tcgcagtcgc
     5701 cagcaaaatg cataaccgca gtgtaggtct ggcctttaat atgccacgcg aaccagacgg
     5761 tacccgctgg cgtaccatct tcaccgccct ccagtccgcc gtagccggta atggcaatac
     5821 tgacatcagc atccgcacgc tctatggcac ctgttgccat ttctgctgcc actttctcac
     5881 tcaccgcaga atatcgttca agagattgct ggcttacgct gaggattttc atctttgcct
     5941 gatcggtgaa agtaacaaag cctgcaccgt aaaatttggg tgtatcttca gctgcacaca
     6001 gggcgctagc caacttaccg ccggtgcatg attcggcggt agttaagcgt aattgatccg
     6061 cgataagtct ttgactcaac gcggatgtca ggtttt
//
LOCUS       DAJVUP010000207         6053 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.207, whole genome shotgun sequence.
ACCESSION   DAJVUP010000207 DAJVUP010000000
VERSION     DAJVUP010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6053
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.207"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..2014
                     /locus_tag="OQQ75_003877"
     CDS             <1..2014
                     /locus_tag="OQQ75_003877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4132 domain-containing protein"
                     /protein_id="HCS1978026.1"
                     /translation="RGDYSALISEFKTFWHSYQREWQLYMLAALPIEKTAQAWNVLSK
                     EPHVGVEFVMTHLQLAGLQGFIHSFSRYPQEALPVAQYFAAIELAPLIARAFNKLKTL
                     RENARTWLLKYPEHAITGLLPSALDKAGEAQDNARAALRMLTENGHQPLLQEIARRYN
                     QPEVTDAVNALLALDPLDNHPTKIPTLPAFYQPSLWTRPVLKANAQSLPDSALLHLGE
                     MLRFPQEEALYPGLLQVKDACTADSLAEFVWDLFTAWLTAGAPSKESWAFTALGVLGN
                     DDTARKLTPLIRAWPGESQHKRATVGLDILAAIGSDIALMQLNGIAQKLKFKALQERA
                     KEKIADIAESRELTVAELEDRLAPDLGLDDNGSLLLDFGPRQFTVSFDETLKPFVRDA
                     SGSRLKDLPKPNKSDDESRSNDAVNRYKLLKKDARIVAAQQVARQESAMCLRRRWSPE
                     NFKLFLVEHPLVRHLTRRLIWGVYSAENQLQACFRVAEDNSYSTADDDLFTLPEGGIS
                     IGIPHVLEISPTDAAAFGQLFADYELLPPFRQLDRNSYALTGAERNASELTRWAGRKC
                     PSGRVMGLANKGWIKGTPQDGGWIGWMIKPLGRWSLVMEIDEGFAVGMSPAELSAEQL
                     LSKLWLWEGKAESYGWGSNSTQEAQFSVIDAITASELINDIEALFE"
     gene            2024..2266
                     /locus_tag="OQQ75_003878"
     CDS             2024..2266
                     /locus_tag="OQQ75_003878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005069643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCS1978027.1"
                     /translation="MDKELPWLADNAQLELKYKKSKTPLSHRNWPGEPVSVITESIIQ
                     TLGDELLQKAEKKKRLSGVMKIFHWSGSPPSRRPST"
     gene            2263..5655
                     /locus_tag="OQQ75_003879"
     CDS             2263..5655
                     /locus_tag="OQQ75_003879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001440040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4132 domain-containing protein"
                     /protein_id="HCS1978028.1"
                     /translation="MIGEHKPSVPARTMAALACIAQNDSQQLLDEIVQQEGLEYATEV
                     VIARLFIARCYESDPLVVTLQYQDEDYGYGYRSETYNEFDLRLRKHLSLAEESCWQRC
                     ADKLIAALPGITKVRRPFIALILPEKPEIANELVGLECPRTHFHSKKWLKVVANDPTA
                     VRKLEHYWSQDIFSDREASYMSHENHFGYAACAALLREQGLAAIPRLAMYAHKEDCGS
                     LLVQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFPHATLAALAELLALTEPPARPGY
                     PIIEDKKLPAQQKARDEYWRTLLQTLMASQPQLAEEVMQWLSTQARAVLNSYLSAPPK
                     PVIDSTDNSNLPEILVSLPWRSKKKMTAPRLDLAPLELTPQVYWQPGEQERLAATESA
                     RYFSTESLAQRMEQKSGRVVLQELGFGDDVWLFLNYILPGKLDAARNSLIVQWHYYQG
                     RVEEILNGWNSPEAQLAEQALRSGHIEALINIWENDNYSRYRPEKSVWNLYLLAQLPR
                     EMALTFWLRINEKKHLFAGEDYFLSILGLDALPGLLLAFSHRPKETFPLILNFGATEL
                     ALPVARVWRRFAAQRDLARQWILQWPEHTASALIPLVFTKPSDNSEAALLALRLLYEQ
                     GHGEFLQTVANRWQRTDVWSALEQLLKQGPMDIYPARIPKAPDFWHPAMWSRPRLITN
                     NQPVTGDALEIIGEMLRFTQGGRFYSGLEQLKTFCQPQTLAAFAWDLFTAWQQAGAPA
                     KDNWAFLALSLFGDESTARDLTTQILAWPQEGKSARAVSGLNILTLMNNDMALMQLHH
                     VSQRAKSRPLRENAAEFLQVVAEDRGLSQEELADRLVPTLGLDDPQALSFDFGPRQFT
                     VRFDENLNPVIFDQQNVRQKSVPRLRADDDQLKAPEALARLKGLKKDATQVSKNLLPR
                     LEAALRTTRRWSLADFHSLFVNHPFTRLVTQRLIWGVYPANEPRCLLKAFRVAAEGEF
                     CNAQDEPIDLPADALIGIAHPLEMTVEMRSEFAQLFADYEIMPPFRQLSRRTVLLTPD
                     ESTSNSLTRWEGKSATVGQLMGMRYKGWESGYEDAFVYDLGEYRLVLKFSPGFNHYNV
                     DSKALMSFRSLRVYRDNKSVTFAELDVFDLSEALSAPDVIFH"
     gene            5717..>6053
                     /locus_tag="OQQ75_003880"
     CDS             5717..>6053
                     /locus_tag="OQQ75_003880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978029.1"
                     /translation="MIVQKELVAIYDYEVPVPENPFSFRLEIHKCSELFTGSVYRLER
                     FRLHPTFHQRDREDVDPLINDALIYIRDEFIDERKLRGESPEPVPVIFNCELQNIFNQ
                     LIEYYFIKVG"
BASE COUNT         1552 a         1564 c         1532 g         1405 t
ORIGIN      
        1 gaggggagat tattctgcgc tgatcagcga atttaaaacc ttctggcact cctatcaacg
       61 ggaatggcag ctttacatgt tagccgccct gcctatcgaa aaaacagcgc aggcgtggaa
      121 tgtcctcagt aaagagccac acgtcggtgt cgagtttgtc atgacgcacc tgcaactcgc
      181 tgggttacag ggttttattc actccttttc acgctatcca caagaagctc tacctgtagc
      241 acaatatttt gcggctatcg aattagcgcc actgattgcc cgtgccttca acaaactcaa
      301 aacgctacgc gaaaacgccc gcacctggct gttgaaatac ccggaacatg ccattaccgg
      361 cctgctgcct tcggcgctcg acaaagccgg tgaagcacag gataacgccc gcgctgcctt
      421 gcgtatgctt accgaaaatg gtcatcagcc attactgcaa gaaatcgccc ggcgttataa
      481 ccagccggaa gtaaccgacg cggtgaacgc tctgcttgcg ctcgatccct tagataatca
      541 cccaacaaaa atccccactc ttccggcctt ttatcagcca tcgctctgga cgcgcccggt
      601 attaaaagca aacgcccaat cactgccaga tagtgccctc ctccacctcg gcgaaatgct
      661 ccgcttccct caggaagagg ctctgtatcc gggattattg caggtgaaag atgcctgtac
      721 cgccgactca ctggctgaat ttgtctggga tctgtttacc gcctggctga ctgcgggcgc
      781 gccgtcgaaa gagagttggg cgtttactgc gttaggcgtt ctcggtaacg atgataccgc
      841 tcgcaaactg acgccattaa tccgcgcctg gcctggtgaa tcccagcata aacgcgccac
      901 cgttgggttg gatattctcg ccgctatcgg tagtgatatt gccctgatgc agcttaacgg
      961 catcgcccag aaacttaaat tcaaagcatt acaggagcgg gcaaaagaaa aaattgccga
     1021 cattgccgag agccgcgaac tcacggtggc ggagcttgaa gatcggttag caccggatct
     1081 cggtctggat gataacggtt cgttgctgct ggatttcggc ccacgccagt tcaccgtcag
     1141 ctttgatgaa accttaaaac cgtttgtgcg tgacgcttcc ggcagccgcc tgaaagacct
     1201 gcccaaacca aacaaaagcg atgatgaatc gcggtcgaac gatgcggtta accgctacaa
     1261 attgctgaaa aaagatgcgc gtatcgtcgc cgcccagcag gtagcaaggc aggaatccgc
     1321 catgtgcctg cgtcgccgct ggtcgccaga aaactttaag ctcttcctgg ttgagcatcc
     1381 gttggttcgc cacttaaccc gccgtctgat ttggggcgtt tatagcgccg aaaaccagct
     1441 acaggcgtgc tttagggtgg cggaagataa cagctacagc accgctgacg atgatctttt
     1501 caccctgccg gaaggcggta tctctatcgg cattcctcac gttctggaaa tatcaccgac
     1561 ggatgctgcc gcctttggtc agctttttgc cgactacgaa ctgctaccac cattccgtca
     1621 gcttgaccgt aacagttacg ccctgacagg agccgagcgc aacgccagcg aactgacccg
     1681 ctgggcaggc agaaaatgcc cgagcggtcg ggtcatgggg ctggcgaata aaggctggat
     1741 aaagggcacc ccgcaggatg gaggctggat cggctggatg atcaaacccc tgggccgctg
     1801 gtcgttagtc atggaaatcg atgaaggttt tgcggtaggc atgtcgccag ccgaactcag
     1861 cgctgagcag ctcttaagca agctgtggct atgggaaggc aaagcagaaa gctatggctg
     1921 ggggagtaat tcaacacagg aagcgcagtt ctccgtaatc gatgccatca ccgccagcga
     1981 gctaattaac gatattgaag ccctgtttga ataaggaaag agcatggaca aggaattacc
     2041 gtggctggcg gataacgccc aactggaact gaaatataaa aaaagcaaaa cgccgctcag
     2101 tcatcgcaat tggccgggcg aaccggtgtc tgttatcact gaaagcatca ttcagacact
     2161 gggtgatgaa ttgctacaaa aagctgagaa gaaaaaaaga ttgtctggcg ttatgaaaat
     2221 ttttcactgg agtggcagtc cgccatcacg caggccatca acttgatcgg cgaacacaaa
     2281 ccctcagtcc cggcccggac aatggcggcg ctagcctgta tcgcgcaaaa tgacagccaa
     2341 cagttgctcg acgaaatcgt ccaacaagag gggctggaat atgcgactga ggtggtaatt
     2401 gcacgcctgt ttattgcgcg gtgttatgag agtgatcctc tggtagtgac attgcagtat
     2461 caggacgagg attatggcta tggttatcgc tcagaaacct ataacgaatt cgatctccga
     2521 ctgcgtaagc atctctctct ggcagaggaa agctgctggc agcgttgcgc cgacaaactc
     2581 attgccgcac taccaggaat aaccaaagtt cgccgccctt ttattgcgct gatcctcccg
     2641 gaaaaaccag aaatagccaa tgagttggta ggccttgaat gcccgcgaac tcattttcat
     2701 tctaagaagt ggttaaaagt tgttgctaat gaccccacag cggtgagaaa actcgaacac
     2761 tactggagcc aggatatatt tagcgatcga gaagccagct acatgtcgca tgaaaaccac
     2821 ttcggctacg cggcctgcgc cgcccttttg cgcgaacaag gactggcagc cattccgcgc
     2881 ctcgcgatgt atgcccataa agaagattgc ggcagtctgc tggtacaaat taaccatccg
     2941 caagtcatcc gcaccttgct actggtggct gataaaaaca aacccagcct gcaacgtgta
     3001 gctaaatacc ataaaaactt cccccatgcg acgctcgccg cactggcaga actgctggcg
     3061 ttaacagaac caccagcccg ccctggttat ccaatcatcg aagacaaaaa gctgcctgca
     3121 cagcaaaaag cacgcgatga atactggcgt acgctgttac aaacgctgat ggcatcgcag
     3181 ccacaactgg cagaagaggt gatgcagtgg ttaagtactc aagccagggc agtgctgaat
     3241 agttatttat cggcaccgcc caaaccggtt attgatagta ccgataacag caatctgcct
     3301 gaaatcctcg tttcgctacc gtggcgtagt aagaaaaaaa tgacagctcc acgtcttgat
     3361 ttggcaccgc tcgaattaac tccgcaagtt tactggcaac caggcgaaca agagaggctt
     3421 gccgccactg agtctgcccg ttatttcagc acggaatctc ttgcgcaacg catggaacaa
     3481 aaaagtggac gagttgtatt acaggaactg ggttttgggg atgatgtatg gctgtttctg
     3541 aattatatac tccccggaaa actggatgct gcacgcaatt cactcattgt tcagtggcat
     3601 tactaccagg ggcgggttga agagatcctg aatggctgga actccccgga agcacaatta
     3661 gcagaacagg cgctccgcag cggtcacata gaagcgttaa ttaacatatg ggaaaatgac
     3721 aactactcac gttatcgtcc ggaaaagagt gtctggaacc tgtatttatt ggcacagttg
     3781 ccgcgtgaga tggctttgac cttctggctg cgtatcaatg agaaaaagca tctgttcgcg
     3841 ggtgaggact attttctcag tatcctcgga ttggatgcgc taccaggtct gctgttggct
     3901 ttttcacatc gtccaaaaga aacatttccg ttaattttaa attttggcgc aacagaactg
     3961 gcgctgcctg ttgcccgcgt ctggcgacgt ttcgcggcgc agcgtgatct ggctcgccag
     4021 tggattttac aatggccgga acatacggct agtgcactta tccctcttgt ctttaccaaa
     4081 cccagcgata atagcgaagc cgcattactt gccctgcgtt tactgtacga acagggacat
     4141 ggcgaatttc tacaaaccgt ggcaaaccgc tggcagcgta cagatgtatg gtctgccctg
     4201 gagcagttgc ttaaacaggg tccaatggac atttacccgg cacgcattcc aaaagcccct
     4261 gatttctggc atccggcaat gtggtccagg cctcgactta tcactaataa tcagcctgtt
     4321 accggtgacg ctctggaaat tatcggcgaa atgctgcgct ttacccaggg gggacgtttt
     4381 tatagcgggc tggaacaact gaaaacgttc tgccagccac aaacgctggc cgcttttgcc
     4441 tgggatctct tcactgcctg gcaacaagcg ggggcccccg caaaagacaa ctgggcattt
     4501 ctggcattaa gtctctttgg tgacgaaagc acggcacggg atctgacgac acagatcctc
     4561 gcctggccac aagaaggcaa atctgcccgt gctgtcagtg gtctgaatat acttaccctg
     4621 atgaataatg atatggcgct gatgcagctg catcatgtat cacaacgggc gaaatcacgc
     4681 cccttacgtg aaaacgcagc ggaatttctt caggtggtcg cagaagatcg cgggctaagc
     4741 caggaagagt tagcggacag attagtccca accctgggcc ttgatgatcc gcaggcgttg
     4801 agttttgatt ttggtccccg gcagtttacc gttcgcttcg atgaaaacct caacccggtt
     4861 atctttgatc agcaaaacgt tcgccagaaa agcgttcccc ggttgcgcgc cgatgacgat
     4921 caactgaaag cgcccgaggc actggcccga ctaaaagggc taaaaaaaga tgctactcag
     4981 gtgagcaaaa acctgctccc gcgtcttgaa gctgccctac gtaccacccg acgctggtcg
     5041 ctggcagatt ttcattctct gtttgttaat catcccttta cccgtctggt tacccagcga
     5101 ttaatatggg gggtttatcc ggcaaatgaa ccgcgttgtt tactcaaagc ctttcgtgtg
     5161 gccgcagagg gggagttctg caatgcgcaa gatgagccaa ttgacctgcc tgcggacgct
     5221 ctgattggca ttgcccaccc gttagaaatg acagtagaaa tgcgcagtga atttgcacag
     5281 ctttttgccg attacgaaat tatgccgcct tttcgccagt tgtcgcgccg cacggtgctg
     5341 ctcacacctg acgagtcaac cagtaacagc ctgactcgct gggaaggtaa atccgctacc
     5401 gttgggcagc ttatgggaat gcgatacaaa ggctgggagt caggttatga ggacgcattt
     5461 gtctatgacc tgggtgagta ccggctggtc cttaagtttt cacccggttt taaccactac
     5521 aatgttgata gcaaagcgct aatgagcttc cgttctcttc gagtgtaccg tgacaataaa
     5581 tccgtaactt ttgccgaact tgatgtgttt gatttgagtg aggcgttaag cgcacctgac
     5641 gtcattttcc attaaaaaca cagcgggcag tgatgcaact gcccgttatc aacacgactt
     5701 accagcgggg aaagcgatga tcgtgcaaaa agagctggtt gctatttacg attatgaggt
     5761 ccctgtacct gaaaatccgt tttccttcag acttgagatc cataaatgct ctgaattatt
     5821 tacaggttcc gtctatcgac tggaacggtt ccggctacat ccaacatttc atcaacgtga
     5881 tcgagaggat gttgacccgc taataaatga tgcgttgatt tatataagag atgagtttat
     5941 tgatgagcgg aaattacgag gtgaatcacc tgaacctgta ccagtaattt ttaattgtga
     6001 actacagaat atattcaacc aactaataga atattacttt attaaagtgg gaa
//
LOCUS       DAJVUP010000208         6052 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.208, whole genome shotgun sequence.
ACCESSION   DAJVUP010000208 DAJVUP010000000
VERSION     DAJVUP010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6052
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.208"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(27..395)
                     /locus_tag="OQQ75_003881"
     CDS             complement(27..395)
                     /locus_tag="OQQ75_003881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978030.1"
                     /translation="MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYIC
                     VNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVD
                     GKRSGKINQITTKMLFMCRE"
     gene            921..1616
                     /gene="minC"
                     /locus_tag="OQQ75_003882"
     CDS             921..1616
                     /gene="minC"
                     /locus_tag="OQQ75_003882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HCS1978031.1"
                     /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLK
                     HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK
                     EKAPRPAPAPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD
                     GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL
                     QLVENALTVQPLN"
     gene            1640..2452
                     /gene="minD"
                     /locus_tag="OQQ75_003883"
     CDS             1640..2452
                     /gene="minD"
                     /locus_tag="OQQ75_003883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HCS1978032.1"
                     /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR
                     NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV
                     AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL
                     ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL
                     RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG"
     gene            2456..2722
                     /gene="minE"
                     /locus_tag="OQQ75_003884"
     CDS             2456..2722
                     /gene="minE"
                     /locus_tag="OQQ75_003884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HCS1978033.1"
                     /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK
                     DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK"
     gene            complement(3201..3320)
                     /locus_tag="OQQ75_003885"
     CDS             complement(3201..3320)
                     /locus_tag="OQQ75_003885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001131457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HCS1978034.1"
                     /translation="MPLSYAGYHHFIMMSLVSGEHNTPALSLQDESPGLVPAG"
     gene            complement(3281..3466)
                     /locus_tag="OQQ75_003886"
     CDS             complement(3281..3466)
                     /locus_tag="OQQ75_003886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978035.1"
                     /translation="MSRRYSSATITLVILFCRRPHCRKISVRQYYLKRVIFYPTTLQR
                     TAFKKCLFLMRDIIISS"
     gene            3567..3740
                     /locus_tag="OQQ75_003887"
     CDS             3567..3740
                     /locus_tag="OQQ75_003887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978036.1"
                     /translation="MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIED
                     EIIVRATYLIPDI"
     gene            3742..4086
                     /locus_tag="OQQ75_003888"
     CDS             3742..4086
                     /locus_tag="OQQ75_003888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415690.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HCS1978037.1"
                     /translation="MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNG
                     VNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVI
                     GGTGGAILGKMK"
     gene            4090..4425
                     /locus_tag="OQQ75_003889"
     CDS             4090..4425
                     /locus_tag="OQQ75_003889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmgD family protein"
                     /protein_id="HCS1978038.1"
                     /translation="MMMKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEM
                     AKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAID
                     DTMRAIGKK"
     gene            complement(4482..6052)
                     /locus_tag="OQQ75_003890"
                     /pseudo
     CDS             complement(4482..6052)
                     /locus_tag="OQQ75_003890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707067.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1663 a         1396 c         1386 g         1607 t
ORIGIN      
        1 gaatagaaca taatgtaaac aaggcatcac tcacgacaca taaataacat ctttgtggtg
       61 atttgattga tttttccact ccgcttacca tccacaccaa aataacgatc atcacgacat
      121 aatttttctt taacatcgca aaatacaccg ttagcgaatg taaattcgct gggatcgtag
      181 ccttgtaatg attgtaagtt ttcagcggct ttttcgccga gatatttcct tgttaactct
      241 ggggaaatgc catctgagtt cacacaaata tacgggtcgc aaacaacgcc gcacgccgga
      301 gattgaagtc cgccagcgtc atgtccagac gccattgatg agaacatcat ccccacacct
      361 gacaatccga tataaaaaat acgcatcata ttcatagcac atcctgataa tccaaccgta
      421 caacacttat gctcatttca tcatcaatcc gtaatcaaaa ccgctgacct ggacgagtta
      481 cgatgacctg acagaagtat cagacgtctt ctgcggtttc tatgattatg atagagcaat
      541 tctatggcgg atattaagat aacgggtatc tgttctttaa tgatgctgca aaaaatggaa
      601 agttaagaaa gcctggcgtg gtgaaaaaat acacttgcct caatactgga tatttaaaca
      661 ggtctggaga tgctgtcacg attagggtgc ggaaaaagga agcgtaaata agaacaatca
      721 aaagtacgac ggcaatgggt tgattgacaa gggtattttt taagctatga atcagcgcca
      781 tttatcacag aatagacttt tactctgaat aaatgggagg gtgacttgcc tcaatataat
      841 ccagactata acatgcctta tagtcttcgg aacatcatcg cgcgctggcg atgattaata
      901 gctaattgag taaggccagg atgtcaaaca cgccaatcga gcttaaaggc agtagcttca
      961 ctttatctgt ggttcatctg catgaggcag aacctaaggt tatccatcag gcgctggaag
     1021 acaaaatcgc tcaggccccc gcatttttaa aacatgcccc cgttgtactc aacgtcagtg
     1081 cactggaaga cccggtaaac tggtcagcga tgcataaggc ggtgtcggca accggtttgc
     1141 gggttattgg cgtaagtggc tgcaaagatg cgcaacttaa agccgaaatt gaaaagatgg
     1201 ggctgcctat cctgacggaa ggaaaggaaa aagcgccgcg tccagctccc gcaccacagg
     1261 ctccagcgca aaatacaacg ccggtcacaa aaacgcgttt aatagatacc ccggtgcgtt
     1321 ccggtcagcg tatttatgct ccacaatgtg atctgattgt tacaagccac gttagcgctg
     1381 gggccgaatt gattgccgat gggaacattc atgtctatgg catgatgcgc ggtcgtgcgc
     1441 ttgcaggggc aagtggtgac cgggaaacgc aaatattttg tacgaacctg atggcggaac
     1501 tggtgtccat cgcaggtgaa tactggctga gtgatcaaat cccagcagaa ttttatggca
     1561 aagcggcgcg actgcagtta gtcgaaaacg ctttgaccgt tcaaccgtta aattgatccc
     1621 tttttaacaa ggaatttcta tggcacgcat tattgttgtt acttcgggca aagggggggt
     1681 tggtaagaca acctccagcg cggccatcgc cactggtttg gcccagaagg gaaagaaaac
     1741 tgtcgtgata gattttgata tcggcctgcg taatctcgac ctgattatgg gttgtgaacg
     1801 ccgggtcgtt tacgatttcg tcaacgtcat tcagggcgat gcaacgctaa atcaggcgtt
     1861 aattaaagat aagcgtactg aaaatctcta tattcttccg gcatcgcaaa cacgcgataa
     1921 agatgccctc acccgtgaag gggtcgccaa agttcttgat gatctgaaag cgatggattt
     1981 tgaatttatc gtttgtgact ccccggcagg gattgaaacc ggtgcgttaa tggcactcta
     2041 ttttgcagac gaagccatta ttaccaccaa cccggaagtc tcctcagtac gcgattctga
     2101 ccgtatttta ggcattctgg cgtcgaaatc acgccgcgca gaaaatggcg aagagcctat
     2161 taaagagcac ctgctgttaa cgcgctataa cccaggccgc gtaagcagag gtgacatgct
     2221 gagcatggaa gatgtgctgg agatcctgcg catcaaactc gtcggcgtga tcccagagga
     2281 tcaatcagtg ttgcgcgcct ctaaccaggg tgaaccggtc attctcgaca ttaacgccga
     2341 tgcgggtaaa gcctacgcag ataccgtaga acgtctgttg ggagaagaac gtcctttccg
     2401 cttcattgaa gaagagaaga aaggcttcct caaacgcttg ttcggaggat aagttatggc
     2461 attactcgat ttctttctct cgcggaagaa aaacacagcc aacattgcaa aagaacggct
     2521 gcagattatt gttgctgaac gccgtcgcag cgatgcagaa ccgcattatc tgccgcagtt
     2581 gcgtaaagat attcttgagg tcatttgtaa atacgtacaa attgatcctg agatggtaac
     2641 cgtacagctt gagcaaaaag atggcgatat ttctattctt gagctgaacg tgaccttacc
     2701 ggaagcagaa gagctgaaat aagcccgctg taaaaacgca tttatcttca aggcagagtc
     2761 atttctgcct tgagtttttc atccctctca tccacgttgt ggtaaagcgg cgagtattct
     2821 tgctgatact cctcattgct atttccacct ccccctttac accttaaggc tgttcccacg
     2881 cacagaacaa aatgtttatg cctggttgag taaataacct cattgttagt gtggatacac
     2941 tgggggatga taaccccgca atttcattat tcattgttct cccataggat gaggtttccc
     3001 gccgtaactg gcgggctttt tttgccccag aattttccct tttagccccc tgtaaacgaa
     3061 aactgcgccg aagcgcagtt taatcgttga tggtcagaac gaccagttca cgatatatac
     3121 tgcgggtatc gactgatttc gattccatgc cattggataa atgatagtag cgtctaagtg
     3181 acctaagctc tgctgcaaca tcagcccgca ggcaccagac caggggattc atcctgaaga
     3241 gacagcgcag gtgtattgtg ttcaccactc accaaagaca tcatgatgaa atgatgatat
     3301 cccgcataag aaagaggcat tttttaaacg cagtgcgctg aagtgtagtt ggataaaaaa
     3361 tcactctttt cagataatac tgtcgtacgc ttatctttcg acaatgaggc cgtcggcaaa
     3421 ataaaatgac taatgtaatc gttgctgatg aatatcttct gctcacataa aaatcacaca
     3481 ataatattga taaatcagat tatcttacct ttacaacatt gcgttaacag tcaatgacac
     3541 ttcttgaata aaaatattgc taatcaatga gttattcctc atttaagatt attctcattc
     3601 acgtaaaaaa cataattcct atcatcacag ccacgctcat tttgaattat ctgaataata
     3661 gcgagcgttc tttagttaag cagatcttaa ttgaagacga aattattgtg cgtgcaactt
     3721 acttaatacc ggacatctaa gttgaagaaa aaaatacttg ccttcgggct tatctcagca
     3781 ttgttctgct ccacgccagc gatggcggat atgaatcgca ccacgaaagg tgcattgcta
     3841 ggcgcaggcg ttggtttact tactggcaat ggtgttaatg gcgtactgaa aggtgcagct
     3901 gttggcgctg gtgttggtgc agtaacagaa aaaggccgcg acggtaaaaa tgcgcgtaaa
     3961 ggtgcaaaag taggtgccgc cgttggtgct gtcactggcg ttctgaccgg caatggcctc
     4021 gaaggggcga ttaaaggtgc cgtgattggc ggtacgggtg gtgcaattct gggtaaaatg
     4081 aaataaggaa tgatgatgaa aaaatttgct ttactggcgg gcctgtttgt tttcgcacca
     4141 atgacctggg cgcaggacta caatattaaa aacggtttac cgtcagaaac ctatattact
     4201 tgcgcagaag ccaacgaaat ggcaaaaact gacagcgcac aggttgcaga aattgttgcg
     4261 gtaatgggta atgccagcgt tgccagccgt gatttaaaaa ttgagcaatc tccggaactg
     4321 agcgccaaag tggtagaaaa actgaatcag gtttgcgcta aagacccgca aatgctgttg
     4381 atcacggcaa ttgatgacac catgcgtgct atcggcaaaa aataatattt catatgtacc
     4441 gcgtcgatga atacgacgcg gttttttagc taacggcggg atcagaactt atatttcagg
     4501 cccaccatca ctgcggtgtc attgtagcca ttatcaccca gctgcacgcc cacattcccc
     4561 cagacgctgg ccgctggatt caggttgcca tttacgccaa gtttaatttc ccccaaatta
     4621 ctcgccccat cttgttcgac tttcacaccg ttcattgaga cagcaaaatc tttactgtta
     4681 tggatccagt tcatttcaac aaaaggttca aagtcgtcac cgtgcggacc gctgtttttc
     4741 tcctgagtac gaataaaggt gcggaaacca agtcgggtct ggatgttgtt atttgcgtca
     4801 ttctcaatac gtgagccatt ggcttcggtg tgcgcattat gatcgacgcc catccagata
     4861 gcctgtgcct gtggctggaa tatccacgtg tatttcgccg cttccagacc aaaggattta
     4921 ttcagggcaa agccctaacc cgcttccagc gagacggttg cgcctttcgc actataggat
     4981 tcataggcta attcatcccc tttcaccgag tttttaaacc agctatattg cgcccaggcg
     5041 tcaatgtatg cgcctttttt actgatgtca tcggcaaacc aagtggcata cagccctgcg
     5101 caatagcctc tgacactccc tttcgaacga taatccgaca cgctggaatg agttgagttg
     5161 tagtcgcggg cataaccagc catcactccc aaacgccaac tgtcactgtc ggtaaaacca
     5221 ccggttaaca gatcggcccc taactgcgag acgtagcgat gcgaggtcgt tctcaactgt
     5281 ccgttgctgt cacgccaggc attatgcccg ccaatttgac gtagccaaag tcggcttgaa
     5341 cgctcctgtt cagttacagg atcgatgtag cgcatttcac ccgcacggtc gttcagacgc
     5401 ataacaaaaa gagtgttagc ggctgccagg ttggcgacgt aacttccagc ttcggggcgc
     5461 aggacggggg taggcgtttc tgttggttct gaatttccct ctgagctgtt atcctcctca
     5521 ttcactgact gataacttgt caaataccag tttttgcctt gttgttttag ttgatattcg
     5581 aaagctccag ctgcaatcct tgcatcacct tgtctgaagg cttctgctgg agattcatcg
     5641 ccattcacag ttatgagttc gatcccgttt agcgtggccg cgccgcttcc tccagcattt
     5701 ttcacataga cggtagttga acccgaagta ttaccctcaa caataagtct gtccgtagcc
     5761 gatttatcat cacctaatac ggtgcggata ttaagctgac cattattacc gacataatta
     5821 ccttttacgg ttaatgtttt tccttgggta aatgtttgac catcatcata cgaaagattg
     5881 ataatactgt ctgaattagt cagatgggta acaacggagt catctttcat attccagatt
     5941 gtattttctg aaagcttcag cgtggttgtg ccgctaacga gtttagtcgc tccatttaga
     6001 atagagtcgg acgaaattat gtttaagtca cctccagtat tattaaccag aa
//
LOCUS       DAJVUP010000209         6052 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.209, whole genome shotgun sequence.
ACCESSION   DAJVUP010000209 DAJVUP010000000
VERSION     DAJVUP010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6052
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.209"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            30..923
                     /locus_tag="OQQ75_003891"
     CDS             30..923
                     /locus_tag="OQQ75_003891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1978039.1"
                     /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ
                     IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS
                     APFIRAVSDTLSLFRRDYPGVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH
                     AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHL
                     TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRAQLNEMRWVPIAEEDAVSEMWLVWP
                     KHHEQSPASRNFRIHLLNALR"
     gene            1058..2278
                     /gene="mlc"
                     /locus_tag="OQQ75_003892"
                     /gene_synonym="dgsA"
     CDS             1058..2278
                     /gene="mlc"
                     /locus_tag="OQQ75_003892"
                     /gene_synonym="dgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor Mlc"
                     /protein_id="HCS1978040.1"
                     /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP
                     ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR
                     DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE
                     NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV
                     VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNLGCLETIASVDSILE
                     LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN
                     PQKILIGSPLSKAADILFPVISDSIRQQALPTYSQHISVESTQFSNQGTMAGAALVKD
                     AMYNGSLLIRLLHG"
     gene            2403..3098
                     /gene="bioD"
                     /locus_tag="OQQ75_003893"
     CDS             2403..3098
                     /gene="bioD"
                     /locus_tag="OQQ75_003893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1978041.1"
                     /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS
                     KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL
                     TDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA
                     NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA
                     MLRSVLAVDRVTV"
     gene            complement(3051..4343)
                     /gene="clcB"
                     /locus_tag="OQQ75_003894"
     CDS             complement(3051..4343)
                     /gene="clcB"
                     /locus_tag="OQQ75_003894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001296088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated ClC-type chloride channel ClcB"
                     /protein_id="HCS1978042.1"
                     /translation="MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWL
                     FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQ
                     TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWI
                     ACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDAL
                     LYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGG
                     LIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVF
                     TPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTEMATLLAATTHAPIMSTLMICEM
                     TGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS"
     gene            complement(4502..5116)
                     /gene="dmsD"
                     /locus_tag="OQQ75_003895"
     CDS             complement(4502..5116)
                     /gene="dmsD"
                     /locus_tag="OQQ75_003895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707489.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat proofreading chaperone DmsD"
                     /protein_id="HCS1978043.1"
                     /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET
                     QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS
                     TLALRQWMREKGIQFEMKQYEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST
                     RFLDVFIEKAEHPFYRALGELSRLTLAQWQSQLLIPVAVKPLFR"
     gene            complement(5159..6013)
                     /locus_tag="OQQ75_003896"
     CDS             complement(5159..6013)
                     /locus_tag="OQQ75_003896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HCS1978044.1"
                     /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIV
                     RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL
                     VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS
                     GPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVP
                     DYASLQVWRVVLLCASLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM
                     TVGMAIAG"
BASE COUNT         1579 a         1552 c         1575 g         1346 t
ORIGIN      
        1 ttaataatct caaataagat gttttaaata tgaatattga acttcgtcat ctgcgttact
       61 ttgttgctgt tgcggaagag ctgcatttcg ggcgcgccgc tgcccgcctg aatatttcgc
      121 aaccaccgct aagtcagcag attcaggcac tggagcaaca aattggtgcc cgactgctgg
      181 cacgaactaa tcgcagtgta ttgctgacgg cagcaggaaa acagtttctt gcagatagtc
      241 ggcaaatcct gtctatggta gatgacgctg ccgctcgcgc tgaaagactg catcagggtg
      301 aagcggggga gttgcgcatt ggttttactt cgtccgctcc ttttattcgg gcggtgtccg
      361 atacgttatc gctgtttcgc cgtgattatc ccggtgtcca tttacaaacc cgcgaaatga
      421 acactcgtga gcaaatcgct ccgctcattg aaggaacgct ggatatggga ttgctgcgta
      481 acacagcgtt accggagacg cttgaacacg cagtcatcgt ccatgaaccg cttatggcga
      541 tgatcccgca cgatcatccc ctggcaaata acccgaatgt aacgttggct gaactggcga
      601 aagaaccctt cgtctttttt gatccgcacg tcgggacagg gctgtatgac gatattctcg
      661 ggctgatgcg acgttaccat ttgacgcccg tcatcactca ggaggtgggc gaggcaatga
      721 ccatcatcgg tctggtttcc gccggtctgg gtgtttcaat tttgcctgct tcatttaaac
      781 gtgctcagct caacgaaatg cgctgggtgc cgattgctga agaggatgcg gtttctgaaa
      841 tgtggttggt ctggccgaaa catcatgaac aaagtccagc ttcgcgtaac tttcgtattc
      901 atctgctgaa tgctctcagg tgagggaaat ttcagcgaaa aagcccgaaa aatgtgctgt
      961 taatcacatg tctaagtaaa aatttgacga cacgtattga agtgcttcac catagcctac
     1021 agattatttc ggagcgcgaa aatataggga gtatgcggtg gttgctgaaa accagcctgg
     1081 gcacattgat caaataaagc agaccaacgc gggcgcggtt tatcgcctga ttgatcagct
     1141 tggtccagtc tcgcgtatcg atctttcccg tctggcgcag ctggctcctg ccagtatcac
     1201 taaaattgtc cgtgagatgc tcgaagcaca cttggtgcaa gagctggaaa tcaaagaagc
     1261 ggggaaccgt ggccgtccgg cggtgggact ggtggttgaa actgaagcct ggcactatct
     1321 ttctctgcgc attagtcgcg gtgagatttt ccttgctctg cgcgatctga gcagcaaact
     1381 ggtggtggaa gagtcgcagg aactggcgtt aaaagatgac ttgccattgc tggatcgtat
     1441 catttcccat atcgatcagt tttttatccg ccaccagaaa aaacttgagc gtctaacttc
     1501 gattgccata accctgccgg gaattattga tacggaaaat ggtattgtac atcgcatgcc
     1561 gttctacgag gatgtaaaag agatgccgct cggcgaggcg ctggagcagc ataccggcgt
     1621 accggtttat attcagcatg atatcagcgc atggacgatg gcagaggcct tgtttggtgc
     1681 ctcacgcggg gcgcgcgatg tgattcaggt ggttatcgat cacaacgtgg gggcgggcgt
     1741 cattaccgat ggtcatctgc tacacgcagg cagcagtagt ctcgtggaaa taggccacac
     1801 acaggtcgac ccatatggta aacgctgtta ttgcgggaac ctcggctgcc tcgaaaccat
     1861 cgccagtgtg gacagtattc ttgagctggc acagctgcgt ctcaatcaat ccatgagctc
     1921 gatgttacat gggcaaccgt taaccgtgga ctcattgtgt caggcggcat tgcgcggcga
     1981 tctactggca aaagacatca ttaccggggt gggcgcgcat gtcgggcgca ttcttgccat
     2041 catggtgaat ttatttaacc cacaaaaaat actgattggc tcaccgttaa gtaaagcggc
     2101 agatatcctc ttccctgtca tctcggacag catacgtcag caggcccttc ctacgtatag
     2161 tcagcacatt agcgttgaga gtactcagtt ttctaaccag ggcacgatgg caggcgctgc
     2221 gctggtaaaa gacgcgatgt ataacggttc tttgttgatt cgtctgttgc atggttaaca
     2281 ttttttaact gttctaccaa aatttgcgct atctcaattt gggccaggaa agcataactt
     2341 agactttcaa ggttaattat tttcctagtt tatatttgtg aagcataacg gtggagttag
     2401 tgatgctgaa gcgtttcttt attaccggta cagacacttc tgtagggaaa acggtggttt
     2461 cccgcgcatt gctacaagcg ttagcctccc agggaaaaac agttgcggga tataaacccg
     2521 tagcgaaggg gagcaaagag acacccgaag ggctgcgtaa taaagatgcc ctggtgttgc
     2581 agagtgtttc aaccatcgaa ctgccttatg aagcagttaa tcctatcgcg ttaagcgaag
     2641 aagaaagtag cgtggcgcac agttgcccaa tcaattacac cctcatttca aacggcctgg
     2701 caaacctgac cgataaagtc gatcatgtcg tggtagaagg gactggcggc tggcgcagtc
     2761 tgatgaatga tttgcgtcca ctctctgaat gggtggtgca ggaacagttg ccggtgttga
     2821 tggttgtcgg tattcaggaa ggttgcatta accatgcact gctaacagct caggcgattg
     2881 ccaacgacgg gctgccgctc attggctggg tggctaaccg aatcaaccca ggactggcgc
     2941 attatgcgga aatcattgat gtgctgggta aaaaacttcc ggcaccgctc attggtgaac
     3001 tgccttatct gccgcgcgcc gaacagcgag aactggggca atacatccgc ttagctatgc
     3061 tgcgcagtgt gctggcggta gatagagtca cggtgtaacg tccgcgaaat taccgacgca
     3121 atgacgcagg caatcaataa accggggagt agctgatact ccccggtcat ttcacatatc
     3181 atcaacgtcg acataatcgg cgcgtgcgtg gttgccgcca acagtgtcgc catctcggtc
     3241 aatccgagta aaagcgtaat ttcttcgcca tcagggaacc ataatcccag gctacgacca
     3301 tacaacatgc caatggcaag accgataaat agcgtcggtg taaagacacc accgggtgcg
     3361 ccggaaccgc tactcgccag cacggcacac agtttacaaa ggaagatccc ggcaatgatc
     3421 attaacagtg gtggggcggt taaaaaggat tgtacggtgc tatagccgtt gccccacact
     3481 gcaggtgtga acagggaaag cagacccacg atcaacccgc ctagtgccag ttgccagggc
     3541 ggcgcaagtt tgagactcac aaatccacga tgacaggcgt tcattaacgt taacaacagt
     3601 ggtccgcaca gacctgccag cacacctgta ctgataatca gcgcatagtc acgagcctga
     3661 accgtcactg agagttgtac gttgtagagt aacgcgtcgc tatgattaat cagattgcta
     3721 accagcaatg ccacgacggc ggaaataatc accgggccga gagaggccaa catcatagtg
     3781 ccaaacagca cttcggctat aaataaactg ccagcaagcg gggcacgata ggccgcagcc
     3841 attcccgccg cggcgccaca ggcgatccat aatttccact cctggcgtgg cgtaaaacgt
     3901 tgggcaaaac aggaggcggc aagggcagct aaaagaatca tcgcaccttc gcgaccaatt
     3961 gcactgccgc tggttactac cagcagcgag gcaagcgatt taaccaggct tgctgcgtaa
     4021 tcgaactgtc catcggtttg caacgcttcc atgtaatcgg tcggcgcatg agggcgttgt
     4081 tgggtaaatt tctgccagcc catcagcaac aaacccgccg ccagtccgcc gagcgccgga
     4141 gttagcaacc gtcgccaggg ggaaaggttt gtcgctgcat tgaccagact gccggagtca
     4201 ttattgagga acaaccactc cagtagcagc atcgcatgac gaaacccggc aacggcaaag
     4261 gccgcgagaa taccgacgac tgttgcgata agcagacggc ggaacatagt gcgcagatcc
     4321 ggatagatgt gtagatgatg catgagcaga aatgggcaat gaaacacggg cgactatttt
     4381 gcggcaaaag aggccagccg caaaagcagt gcgtgcttta agagataaaa aaacgtgaca
     4441 ctgtaaccta ttattgccgg attgcgcgta atcgtcacca tccggcaata ttacggtgat
     4501 cctatcgaaa cagcggttta accgcgacag gaattaacag ttgtgattgc cattgcgcca
     4561 gcgttaagcg agacagttca cccagtgcac ggtagaaagg gtgttctgct ttttcgataa
     4621 aaacatcaag aaaacgtgtt gaccacggaa aaaggtgcca tgccagcaat tcttcgcatt
     4681 ctgtctggcg accattctcc gccaaccacg cagccatcaa cagcagtgaa ccaaaatgat
     4741 cttccggttc gtattgcttc atttcaaact gaatgccttt ctcgcgcatc cactgacgaa
     4801 gtgccaatgt tgaatcgcca aacagcacag attcgcgatc cagccagacc gacccccacg
     4861 gcggagacgg cagtgcccac gggccgacaa acaaacgctg ccaggcctgg gcgtgagtct
     4921 cttcacactg tgtctgaaaa gccgtcacca gcggcgctaa tgacgcttct ggtagaggcc
     4981 actgagtttc ccagccgtca ctggtgagta ccgcaaccag aggtgcggct tccgcactct
     5041 ctggagcgta ataaaacagc gcgcccaaca cgcgcgccgc gacagaaaaa ttatcttgct
     5101 gtgaaaaatg ggtcattcct aacatcctga aatgtgcggg ttgccccgca ccaatttgtt
     5161 aacctgcaat agccattcct actgtcatgt gcaggccata aaagagcaca cgcccgatca
     5221 tctcaccgcc aagtatgagg attagcccca gaataagtcc ggcaacgtga ggttcacggc
     5281 gacgaatgag cgggcaaagc cagcatccaa gacttgcgca taacaatacc acacgccaga
     5341 cctgtaagga ggcgtaatct ggtaccagtg cgctggcttg ttgcacggat gagtgaatag
     5401 acgccagaga caaaccttgc agcacaatca ccccggcaca agcgatcagc gccagaacgc
     5461 taatgatggc aaatggtgtg gtattaaatg taacgcgagc tgcccgcaga attgcggcag
     5521 caagtattgg accgctcaac aataccgtca ggaagaaagc cagcgtagtg taaccgttat
     5581 gccaggttgg cacggtgtcg atttgataca cgcaggtcat catccagacg aaaatgacgc
     5641 cgagcgccat gctgacaagt aaccagagtt tccccaacgc ttgcggcatt ttaccgatga
     5701 ccgccaccag ccaccatagt ccaccaacgg caaaaaatat ggaaccggca gcaatctcgt
     5761 tactcagacc agaagctccg attcgattca gcgagttaaa cgctcgcagt ggcgatccca
     5821 ggtgcatgac agaggcaata aacccgatgc ccatcaacag ccagaggaaa aacatgccac
     5881 ggacaatacg ctgacggtct gcgtcatttt tggcggcgaa ccagccaatt ccgctaacaa
     5941 tcagcgcgcc tactacgcat tgacccaata cggtaaagat aaccagtggc cattcatgcc
     6001 atccatttcc cattttacac ttcctccgga ttagccagat aaccagtggt at
//
LOCUS       DAJVUP010000210         6032 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.210, whole genome shotgun sequence.
ACCESSION   DAJVUP010000210 DAJVUP010000000
VERSION     DAJVUP010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6032
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.210"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            210..521
                     /locus_tag="OQQ75_003897"
     CDS             210..521
                     /locus_tag="OQQ75_003897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HCS1978045.1"
                     /translation="MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGG
                     VLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWN
                     Y"
     gene            complement(552..1124)
                     /locus_tag="OQQ75_003898"
     CDS             complement(552..1124)
                     /locus_tag="OQQ75_003898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaY family lipoprotein"
                     /protein_id="HCS1978046.1"
                     /translation="MKLVHMASGLAVAIALAACADKSADIQTPAPTANTSISATQQPA
                     IQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFV
                     LPFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINKGGTKADLTLVPVQQTAVPV
                     QASGGATTTVPSTSPTQVNPSSAVPAPTQY"
     gene            1342..2202
                     /gene="tesB"
                     /locus_tag="OQQ75_003899"
     CDS             1342..2202
                     /gene="tesB"
                     /locus_tag="OQQ75_003899"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HCS1978047.1"
                     /translation="MSQALKNLLALLNLEKIEAGLFRGQSEDLGLRQVFGGQVVGQAL
                     YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF
                     YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV
                     RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIG
                     FLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST
                     VQEGVMRNHN"
     gene            complement(2251..3537)
                     /gene="amtB"
                     /locus_tag="OQQ75_003900"
     CDS             complement(2251..3537)
                     /gene="amtB"
                     /locus_tag="OQQ75_003900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter AmtB"
                     /protein_id="HCS1978048.1"
                     /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF
                     MTIPGIALFYGGLIRGKNVLSMLMQVTVTFALVCILWVVYGYSLAFGEGNNFFGNVNW
                     LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL
                     SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH
                     NLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRG
                     KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC
                     DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA
                     FIGYKLADLTVGLRVPEEQELEGLDVNSHGENAYNA"
     gene            complement(3567..3905)
                     /gene="glnK"
                     /locus_tag="OQQ75_003901"
     CDS             complement(3567..3905)
                     /gene="glnK"
                     /locus_tag="OQQ75_003901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HCS1978049.1"
                     /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE
                     LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI
                     RTGEADEAAL"
     gene            complement(4086..5867)
                     /locus_tag="OQQ75_003902"
     CDS             complement(4086..5867)
                     /locus_tag="OQQ75_003902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdB family multidrug efflux ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HCS1978050.1"
                     /translation="MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPL
                     LISYFIDNMVAKNNLPLKMVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRT
                     DVMDAALRQPLSEFDTQPVGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAM
                     FSLDWRMALVAIMIFPVVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ
                     QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSAS
                     GTIEVGVLYAFISYLGRLNEPLIELTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDR
                     PLQSGTIEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYP
                     LTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQAL
                     ETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASID
                     SGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRGQAVEQGTHQQLLAAQG
                     RYWQMYQLQLAGEELAASVREEESLSA"
     gene            complement(5860..6006)
                     /locus_tag="OQQ75_003903"
     CDS             complement(5860..6006)
                     /locus_tag="OQQ75_003903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001163619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter"
                     /protein_id="HCS1978051.1"
                     /translation="MQHGHIAQRGNHDELAQQSGWYRDMYRYQQLEAALDDAPEIREE
                     AVDA"
BASE COUNT         1466 a         1748 c         1510 g         1308 t
ORIGIN      
        1 tccggacctg acctggtaaa cagagtagcg ttgcgggaga accaacagag cccccattga
       61 gagcgttgag aaccaacgcg caggcacatt atcactgctg ccccggctaa ttgcaaccca
      121 tcgcgtgcca gatgctggtt tcttgcgcaa tgcgacttca ctcgggcgtt tttccagatt
      181 atgctgaaaa attacctcag gaagaaaaga tggaaaaaga agattcattt ccccaacgcg
      241 tctggcaaat cgtcgccgct attcccgaag gctatgtcac cacttacggt gatgtggcga
      301 aactggcggg atcgccccgc gccgcgcgcc aggtgggcgg tgtgttaaag cgtctccctg
      361 aaggcagcac cttaccctgg caccgggtgg ttaatcgcca cggcacaatt tcgctaaccg
      421 gaccggattt acagcgtcag cgacaggcat tactggcaga aggtgtgatg gtatcgggaa
      481 gcgggcaaat cgacttgcag cgttatcgct ggaactacta accctctccg ggcggagagg
      541 gttaacgtcg cttaatattg cgtaggagct ggaactgccg aagacggatt cacctgagtt
      601 ggtgaagtcg aaggtacggt agtcgttgca ccaccgctgg cctgaaccgg cacggcggtt
      661 tgctgcaccg gcaccaatgt caggtcggct ttagttccgc ccttgttgat caccggctga
      721 acggtatcgg taataaatac cagtttgtca ttcacggtaa tcgccgcact caacagaata
      781 cgcgcgttcg gctgaacatc tgccgggtta aatggcagaa caaagctgaa tggtgactgt
      841 ttaccttcgg tacgcaccgc tttctgcgcc agcacttttg acggtgcatc ggctaacgac
      901 gcgtcagaaa gtgtcacggt cagcacagca tcaggcggca gtgcgacttt ctgccggatc
      961 cagacggtac cggagacatt cggttgctgg atagcaggtt gttgtgttgc tgaaatagac
     1021 gtatttgcag tcggggctgg cgtctgaata tccgcgcttt tatctgcgca agccgccaac
     1081 gcaatcgcaa ccgctaaacc actggccatg tgcacgagtt tcattcattt ctccttatta
     1141 tcaatgcacc agcgggctaa ctttcctcgc cggaagagtg gttaacaaaa tagtaacgtc
     1201 aataagtgtg gcacacatca cgcatttctg cctgtaatta gcccgtaatt cagattattg
     1261 cacccatcgg accagtggca aatttgcgtt atactcaact cactttggct tgctgcggca
     1321 gctttgttac tggagagtta tatgagtcag gcgctaaaaa atttactggc attgttaaat
     1381 ctggaaaaaa ttgaggcagg actctttcgc ggccagagtg aagatttagg tttacgccag
     1441 gtgtttggcg gccaggtcgt gggtcaggcc ttgtatgctg caaaagagac cgtcccggaa
     1501 gagcggctgg tacattcgtt tcacagctac tttcttcgcc caggcgatag taagaaaccg
     1561 attatttatg atgtcgaaac gctgcgtgat ggtaacagct tcagcgcccg ccgggttgct
     1621 gctattcaaa acggcaaacc gattttttat atgacggcct ctttccaggc accagaagcg
     1681 ggtttcgaac atcaaaaaac aatgccgtcc gcgccagcgc ctgatggcct gccttcggaa
     1741 acgcaaatcg cccaatcgct ggcgcacctg ctgccgccag tgcttaaaga taaattcatc
     1801 tgcgatcgtc cgctggaagt ccgtccggtg gagtttcata acccactgaa aggtcacgtc
     1861 gcagaaccac atcgtcaggt gtggatccgc gcaaatggta gcgtgccgga tgacctgcgc
     1921 gttcatcagt atctgctcgg ttacgcttct gatcttaact tcctgccggt agctctacag
     1981 ccgcacggca tcggttttct cgaaccgggg attcagattg ccaccattga ccattccatg
     2041 tggttccatc gcccgtttaa tttgaatgaa tggctgctgt atagcgtgga gagcacctcg
     2101 gcgtccagcg cacgtggctt tgtgcgcggt gagttttata cccaggacgg cgtactggtt
     2161 gcctcgaccg ttcaggaagg ggtgatgcgt aatcacaatt aaaaaaatag ccggaggtga
     2221 aaaccgtccg gctgtttttt gcagtgcttg ttacgcgtta taggcattct cgccgtgact
     2281 gttgacatcc agcccttcta gctcctgctc ttccggtaca cgcagaccaa ccgtcagatc
     2341 cgccaatttg tagccaataa atgccaccac accggaccag acgatcgtaa tggcgatgct
     2401 ttccagctgt accagcaact gatgacccat cgtcacacct tcagcgaagc ccacgccgcc
     2461 cagcgagctg gcggcaaaaa tcccggtcat gatacagccg acaatgccac aaacgccgtg
     2521 cacaccgaag acatcgcagg gatcatccac ccgcagcaag cgtttgagca tggtaacgcc
     2581 ccacaagccc gccagaccag ctaccacgcc gataatcaac gcgccgccaa ccccaatgta
     2641 gccgcacgct ggcgtcacgc cgaccagacc ggcaatcgcg ccagaacacg cccccagcag
     2701 tgaaggctta ccacgcagcg cccattcacc gaagatccag ccaagaattg ccgccgccgt
     2761 tgcgaccaca gtattcacaa atgccagtgc cgcgatttca ttcgccgtgc ccgctgaccc
     2821 ggcgttaaag ccaaaccaac cgatatagag aatggcagtc ccggtgaaga ccatcggcag
     2881 gttgtgcggt ttaaacgcct ctttaccgaa gcccacgcgt ttgcctatca gatacgcgcc
     2941 caccagaccg gcgattgcgg cgttaatgtg caccactgtg ccacccgcga aatccagtgc
     3001 accgtgagaa gccagcaaac cgccgcccca caccatatgc gcaatcggaa tgtaagagag
     3061 cgtcagccat accaccacga aaatcaacac agctgagaag cggattcgtt ccgccagcgc
     3121 cccaactatc aagcctacgg taatgcaggc aaacgatccc tgaaacgcta cgtggatata
     3181 ctgataaatg ctgcccatca ccgccgtcag ttcgatgttt ttcagcatca accagttaac
     3241 gttgccgaag aagttgttac cctcaccaaa cgccagcgag taaccgtaaa ccacccagag
     3301 aatacagacc agtgcaaacg tcaccgtcac ctgcatcagc atcgacagca cgtttttgcc
     3361 gcgaatcaac ccaccgtaaa acagggcaat ccccggaata gtcataaaca gcaccagcgc
     3421 agtacaaatc atcataaacg cattgtcggc tttatcggcc accgcaggtg cagccattac
     3481 cagtcccggc agcatcgcca gtgaagcaag cccagttttt atcgtcgcta tcttcatttt
     3541 tcgttcctgt tgctgtgtgc cagagattac agcgccgctt cgtcggcttc gccggtacga
     3601 atacgaatga cgcgttgcaa ttcagcgacg aagattttgc cgtcgccaat ttttccggtg
     3661 taagccgcct tactgacgat atcgatcact tcatcgagtt ggtcatcagc aattgccaca
     3721 tcaattttta cttttggcag gaagttgacg ctgtattccg ccccccggta cagctcggca
     3781 tgccctttct gacgcccgaa acctttcact tcggtgacgg tcaggccctg aataccaatg
     3841 gaagataacg cttcacgaac gtcttccagc ttgaatggtt tgattatcac ggtcaccagc
     3901 ttcatagatc ccctccagtc agaattcggt aatggttctg ctacacgaag aaggtattgc
     3961 aagcggtgtg ccagaaatga aaaacgagaa agagagcagg aagttaagaa gattgaaaat
     4021 gaaaacgcac tatgacagtg cacagtgcgt tacatttttg caccaacgat gaaatattgc
     4081 gctattcagg cgctcaatga ttcttcttca cgcacgctgg ctgccagctc ttcgcccgca
     4141 agttgcagtt gatacatctg ccagtagcgt ccctgggccg ccagcagttg ctggtgagtg
     4201 ccctgctcca cggcttgccc acgatgaagc accagaatgg tgtcggcatc aacaatggtc
     4261 gataagcggt gagcaatcac caccagcgtg gtatgttcac gcacagccgc cagagcatgt
     4321 tgaatcgcct gttcagtacc ggagtcaatg ctggcggttg cctcatcaag gatcaggatt
     4381 tgcggcgtct ccaccaacac gcgtgccagt gccagcagtt gcttttgccc gacggagaga
     4441 ttattcccct gctcgcccag cggcgtataa ataccatcac tcatgctgcg cgccagctcc
     4501 gccagttgca cggtttccag cgcctgccag acgcgttctt cggagatatc acgccccagc
     4561 gtcacgttgg cgaggaaggt atccgccagc accaccggat cttgctgcac cattgccacg
     4621 ccctggcgca gcgcgctgtg acttagcgaa cttaatggac gaccatcaag gcgaatctca
     4681 ccttccgtta gcgggtaata gcccatcaat aaactggcga gggtgctttt gccactgccg
     4741 gtatgcccga ccagtgccac aaagttacgc gaaggcacag agagattaat gttctttagc
     4801 accagattgt catcgcgata agcaaatgac acgttatcga cttcgatggt gccactctgt
     4861 aacgggcgat catcattgcc atattgctgg cgcggtccgt ccatcagttc aaacacgcgc
     4921 tcaccagcaa caacagcctg ttgcagcatc gcctgttgcg tggtcagttc gattaagggt
     4981 tcgttaagtc gcccaagata gctgataaac gcatacagca cgcctacttc aatggtgccg
     5041 ctagcggaga agccaaacag catcaacaag ccacaaagaa tgagcgatga aaacagactc
     5101 agcagcggac gcagcagaaa accgtcgagg cgcagggttt gcatcctggc catatagtgt
     5161 gaacgactgg cctcccccat acgttcgcca aatcgcgcct gctgacggaa ctgctggata
     5221 acgctcatgc cattgatgat ttcgttaaag ccgtcgttga tatccgccag ataggcgcgc
     5281 acacgacgga caatcggcgt gctgtaacgc tggtatatca ccattaccac cagcaccacc
     5341 gggaaaatca ttatcgccac cagcgccatt cgccagtcga ggctgaacat cgccaccagc
     5401 atcgcgccca ccagtgcggc gctacgcagg acagttgcca ctacggtaac gtagagatcg
     5461 cggatcactt cagtgtcatt agtgacgcgg gaaatcacct gcccgacggg ttgggtatca
     5521 aactcgctta atggctggcg caatgcggca tccatcacgt cggtacgcaa ctgttgcact
     5581 acgcctactg ccgcccgatt aaacagcagc gactgcgcgt aatgtagccc ggcggcaaac
     5641 agttgtagcc caacatacgc cgcagccagc cctgcaacca ttttcaacgg caggttattt
     5701 ttcgctacca tattgtcgat aaaatagctg ataagcagcg gcccactgac ttctgccgct
     5761 gccgcaaccc acatcatcag gaccgcaatc cccagcggtt tacgccacgg cgaaccgtac
     5821 gctaacagac gcttgagagt cggccacagt tggctaaaac tacgcatcga cggcctcctc
     5881 gcgaatttcc ggagcgtcgt cgagcgccgc ctccagttgt tgatagcgat acatatcgcg
     5941 ataccagccg ctttgttgcg ccaactcatc atgattgcca cgctgggcga tatgtccgtg
     6001 ctgcatcaca ataatttata tgaacgcatc cc
//
LOCUS       DAJVUP010000211         5920 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.211, whole genome shotgun sequence.
ACCESSION   DAJVUP010000211 DAJVUP010000000
VERSION     DAJVUP010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5920
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.211"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..2065)
                     /locus_tag="OQQ75_003904"
     CDS             complement(<1..2065)
                     /locus_tag="OQQ75_003904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS1978052.1"
                     /translation="MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTP
                     AAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIR
                     GIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
                     QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQK
                     NLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTI
                     KQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQ
                     GIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERN
                     LMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPA
                     GSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNFGLKPSTNDTIEIGSKTR
                     IGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNA
                     SWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMA
                     DDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYE
                     PSPGRN"
     gene            2307..3368
                     /locus_tag="OQQ75_003905"
     CDS             2307..3368
                     /locus_tag="OQQ75_003905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HCS1978053.1"
                     /translation="MHLRHLFSSRLRGSLLLGSLLVASSFSTQAAEEMLRKAVGKGAY
                     EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT
                     LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI
                     GKESVIWVVDGENIKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELITIDTADNKI
                     LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA
                     VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ
                     KSTKQQEATQPDDVIRIAL"
     gene            complement(3481..4980)
                     /gene="ansP"
                     /locus_tag="OQQ75_003906"
     CDS             complement(3481..4980)
                     /gene="ansP"
                     /locus_tag="OQQ75_003906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparagine permease"
                     /protein_id="HCS1978054.1"
                     /translation="MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI
                     GTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL
                     GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM
                     IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG
                     LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV
                     MLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA
                     MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS
                     WAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT
                     IAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS"
     gene            5247..5864
                     /locus_tag="OQQ75_003907"
     CDS             5247..5864
                     /locus_tag="OQQ75_003907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HCS1978055.1"
                     /translation="MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGTSRELL
                     KTLNPLCQIPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQQFQRLLVWLVA
                     NVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDC
                     YLCTMRTWGPGHEWFQDNATNISAIADAVCQLPKLQEVLKRNEII"
BASE COUNT         1563 a         1506 c         1426 g         1425 t
ORIGIN      
        1 aatttcgtcc gggcgaaggt tcgtaatatc tcccgtttga ctcattgaca atgacagaac
       61 caacgtattc tttatcgaat aaattatcga cacgaccaaa taaatccaca gttaaattgt
      121 ggtaattgta tttatacccg gtgaataagc cgacgagagt ataagacggc gcttttgccg
      181 tattttcatc atctgccata atatcgccca tataacgcgc ttccgtgcct gcataccaac
      241 catcttccgg tacataacct atcgacgcaa agcccatatt acgggcgatc cctggcatcc
      301 gattaccgtt acaatcctgt tcattgcaaa cattgctgcg ataggtcgca tcaagccagg
      361 tccaggacgc gtttacgcga aaatctcctg cgaaacgttg atcccatgcc agttcagcgc
      421 cttgacgacg ggtctttccg gcatttttgt aagtcgtacg cccaccgcta ctgctatcga
      481 caacaatttc atcatcagtg tcggtctgaa acaatgcgag actaagcagc ccatcaccaa
      541 tacgcgtttt actgccgatc tcaattgtat cgttggtgga tggttttaaa ccaaagttca
      601 taccgctttg cccatcagca cgataagaca gctcattaat cgtcggcgtt tcaaagcctc
      661 gcccggctgc cagatagata ttccaggcat cggtcattgc atattttaac gaaccggcag
      721 gtagccattt atgataactg gcatcaccgc tgtcatcgcc gttacccgga gtaacgtaat
      781 ggtcgttgga atcaaaccac acggagctgt agcgcacgcc agcatccagc gacagttttt
      841 cgctcagctg ccactgcgtc tgtaaatagg gatcgatgtt ccacatcaga ttgcgttcgt
      901 cgcgacgcaa ctcacctttt tgcccgtact ccggcatgcc gctattcagg cggaagttat
      961 tgtagccctt gcggttttca ctcatgtttt cgtagttcag gccggtagtg aacgtgaccg
     1021 gaacgcccag ttcaccacgg tgtgtccagc ggctgtctat cccctggtaa tggcgttgca
     1081 gggtaatcac gccgcccgca tgtgacgggt taagttgtgg tgccatgggt attgactggt
     1141 actgggtcgt ttctcgctct ccggcataca tcatcacact catatcatct tgcgcgctca
     1201 ggctacgctc atagcgcaac ccagcctgag tttgcttgat ggtttttcgc gtgtcgtact
     1261 gttctgcacg aggcgcttgt tgtggattag ccttccattc tgctttggtt agcccacctg
     1321 ggtcatctgc tttgatatcc acactattga aaatcagact taatttgctg gcttcatcaa
     1381 tgcgtacgcc cagtttggca ttggctaaat ttttctgtgc gccactatgg tcacgatagc
     1441 cgtgggtcgt aaaacgcgtg gttgagacgg tgtaatcgac atcgccaggc tgtgtgccgt
     1501 ctcccgttgc gcccgttgct ttcagcccat agcgccagct gccaaaactg ccgtagtaac
     1561 tactggcttc aatggttggt ggctgttgtc cggtctgggt ggtgacattc attaccccac
     1621 cagacgcgtt gccatacagg gcagagaagg ggccacgcag cacttccaca ttttgcacac
     1681 tgcttaaatc gatgttggat gtttgccctt gcccgtcggg catggtggcg ggaataccgt
     1741 ccacatacag gcgaataccg cgaataccgt aagtggagcg ggagccaaat ccgcgaatcg
     1801 acagctgtaa atcttgcgca tagttctgcc ggttttgtac ctgcaaacca ggcacgccgg
     1861 tcagtgattc ggacaagtta atgcgcggtg ttgccaggcg catctcctcg ccatccacca
     1921 cgcttactgc tgctggggta tccagttctg aaaccacctg cggtgcggca ctgacaatca
     1981 tagtctgttc atcagcggca aaaacaacgg gggaaaggac aagcagtgcg ggcaaaacgg
     2041 tctgtcggac ggaaaaaatc ttcatgaaaa aagccaggtt aagaatggga aaacgctgtc
     2101 atggtaataa aattgtaaac ttatgcaaaa cgaaacggca cgatacgtta attaattgag
     2161 aaaattgtag tcgtaacggc aagaaatgct ccacatttga gaaaataatg attaccattc
     2221 ccatttataa caagagcgtg acgatgatta cgcttagcga agcattgtga agcagcaaaa
     2281 atattggttc atcaaaggga gtcgtcatgc atttacgtca tctgttttca tcgcgcctgc
     2341 gtggttcatt actgttaggt tcattgcttg ttgcttcatc attcagtacg caggccgcag
     2401 aagaaatgct gcgtaaagcg gtaggtaaag gtgcctacga aatggcttat agccagcaag
     2461 aaaacgcgct gtggctcgcc acttcgcaaa gccgcaaact ggataaaggt ggcgtggttt
     2521 atcgtcttga tccggtcact ctggaagtga cgcaggcgat ccataacgat ctcaagccgt
     2581 ttggtgccac catcaataac acgactcaga cgttgtggtt tggtaacacc gtaaacagcg
     2641 cggtcacggc gatagatgcc aaaacgggcg aagtgaaagg ccgtctggtg ctggatgatc
     2701 gtaagcgcac ggaagaggtg cgcccgctgc aaccgcgtga gctggtagct gatgatgcca
     2761 cgaacaccgt ttacatcagt ggtattggta aagagagcgt gatttgggtc gttgatggcg
     2821 agaatatcaa actgaaaacc gccatccaga acaccggtaa aatgagtacc ggtctggcgc
     2881 ttgatagcaa aggcaaacgt ctttacacca ctaacgctga cggcgaattg attaccatcg
     2941 acaccgccga caataaaatc ctcagccgta aaaagctgct ggatgacggc aaagagcact
     3001 tctttatcaa catcagcctt gataccgcca ggcagcgtgc atttatcacc gattctaaag
     3061 cggcagaagt gttagtggtc gatacccgta atggcaatat tctggcgaag gttgcggcac
     3121 cggaatcact ggctgtgctg tttaaccccg cgcgtaatga agcctacgta acgcatcgtc
     3181 aggcaggtaa agtcagtgtg attgacgcga aaagctataa agtggtgaaa acgttcgata
     3241 cgccgactca tccaaacagc ctggcgctgt ctgccgatgg caaaacgctg tatgtcagtg
     3301 tgaaacaaaa atccactaaa cagcaggaag ctacccagcc agacgatgtg attcgtattg
     3361 cgctgtaata gatatggcga gggtgaaaac ggtgagactt gcctgccttt tatcacggcg
     3421 tatccggcac tttcgtcagt aatctgaatt tgcccggcac gtagccgggc aattttgcaa
     3481 ttaactcgcc gtttcaggct taaacacaat ttcctgtttt tcttcatctt cctcgacgac
     3541 tggcgcagtg ctgtgaattt cagcaacgcg tttgcgcaca ccaaaccagc ctataaccag
     3601 cagaataccg ataatcggca gcgccgcgat agtataagtc ccgttcgggt aatcgaacgc
     3661 catcagcaca aggacactca gtaaaaacag taatgtcagc caggaagtga agggcgcgcc
     3721 aggcagttta aaactgacat ccgctgcttt gccttcttta atcgctttac gcaggcgcat
     3781 ctggcacacg atgataaacg cccatgaagc gatgattccc agcgacgcga agttcaacac
     3841 aatctcaaat acgcgcgacg gcaccagata gttgaggaat acgccgacga catacacaac
     3901 cagtgtcgct agaatcccgg catacggcac atgctgacga ctcattttcg ccataaaact
     3961 cggtgcggaa ccgcccatcg ccattgagcg cagaatacgt ccggtgcagt acagacctga
     4021 gttcaggctg gagagggcag cggtcagcac cacaatgttc ataatgctgc cgatatatgg
     4081 cacacccagt ttagagaaaa acgtcacgaa cggactttgc cccgcctgat acgcgctcca
     4141 cggcaataac ataaccagca acaccacgga gccgacgtaa aacaggccaa tacgccaaat
     4201 cacactgtta atggctttag gcaccatggt ctgcggatct ttacattctc cggcagctgt
     4261 acccaccatt tcaatggagg caaaagcaaa cactacgccc tgaatcaaca ccagcgcagg
     4321 cagcaaaccg tgggggaaga agccgccatt atcggtgatt aaatgaaagc cagtggtgtt
     4381 gccatccagc ggctgaccac taccgaggaa cactgtaccc acgaccaaaa aggtcacaat
     4441 ggcgagcact ttaataagcg caaaccagaa ctccatctcc gcaaaccatt tcacaccgat
     4501 catattcatg gtgccaacga tggtaagtgc agcgagcgca aagacccact gcggcacgcc
     4561 gccaaacgca ccccagtaat gcatatacag agcgacggcg gtaatatcaa caatccccgt
     4621 catcgcccag ttgatgaagt acatccagcc agcaacataa gcggctttct cacccaaaaa
     4681 ctcacgggca taagagacaa aactgccact ggaagggcgg tgtagcacca gctcacccaa
     4741 tgcacgcaga ataaaaaacg aaaacaagcc acaaattaaa taaaccagtg ccagtgctgg
     4801 acccgccatt tgcagtcggg ctcctgcacc taaaaacaag ccggtgccaa tcgcgccgcc
     4861 aatggcgatc atctgtacct ggcgattgcc catcgctttg tgatacccct cttcgtgggc
     4921 attaagccag cggcgtttcg cggcgtgttg atctgaagtg tcggtgtcgt gtttactcat
     4981 tgctctccct gattgcttta atgaaaaagt catataagtt gccatgaaca atgtttattc
     5041 atcctggcga tgatagttat caccattatt ctttatgggt ataaaactat cggcgcagca
     5101 tcctacccgt tatcgatata cgatgcaaaa catcccctta caatcctgaa ggggattcat
     5161 acaactgacg aaaaaatgac aaatactttt gctggttaac ctgtgtactg tcctacactt
     5221 aatctttaaa agattgtgag gggcatatga ttaaggtgta tggcgtaccc ggatggggct
     5281 ctacaatcag tgagctgatg ctaacactgg ctgatattcc ttatcagttc gttgatgtca
     5341 gtggttttga ccacgaggga acttcacgcg agttattgaa aaccctgaac ccgttgtgtc
     5401 agattccgac actggcgctg gaaaatgacg agattatgac ggagacagcg gcgattgcat
     5461 tgatggttct cgatcgtcgc ccggaccttg cgccaccggt tgggcgcgcc gaacgtcagc
     5521 agtttcaacg gctattggtc tggctggttg ctaatgtcta tccaacattc actttcgccg
     5581 attaccctga gcgttgggct cctgacgcac ctgaacagtt aaagaagaat gttattgaat
     5641 atcgtaaatc gctttatatc tggctgaatt cacaattgac cgctgaacct tatgcgtttg
     5701 gtgagcaact aacgctggtg gactgttatc tttgcactat gcgcacatgg gggcctgggc
     5761 atgaatggtt tcaggataat gccacgaata tcagtgcgat tgctgatgct gtatgtcagt
     5821 taccgaaatt acaagaagta ttaaaaagga atgaaattat ttgagtggga taccagagga
     5881 ttatgttatt tattattcag taactttatc cacaatgatg
//
LOCUS       DAJVUP010000212         5864 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.212, whole genome shotgun sequence.
ACCESSION   DAJVUP010000212 DAJVUP010000000
VERSION     DAJVUP010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5864
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.212"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..786)
                     /locus_tag="OQQ75_003908"
     CDS             complement(<1..786)
                     /locus_tag="OQQ75_003908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978056.1"
                     /translation="MSLLFAERPLVINTQLAMKIGLNEAIVLQQLHYWLRDTNSGMEC
                     DGVRWIYNTTEQWLEQFPFWSESTLKRAFASLKTLGLLRCEKLNKSKRDMTNFYTINY
                     GSELLDDGKLSESIGSKCAAPSGQNDTMEEVKMKRSIGSKRPNVIGSKWPDDPTENTT
                     EITTENKNTFRPEASQPDPQTAEQDFLIRHPGAVVFSAKKRQWGSQEDLACAQWIWGR
                     IVGLYEQAASDDGEIMRPKEPNWTVWANDVRTMRMLDGRSHMNR"
     gene            complement(767..1288)
                     /locus_tag="OQQ75_003909"
     CDS             complement(767..1288)
                     /locus_tag="OQQ75_003909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001578395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978057.1"
                     /translation="MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNID
                     VQRVTDEGGAVDQRALGVNRVKIFERWKAIDTRDKREKFTALVPAIMEAIRINDFRLY
                     REISDGKSITYMIAGLNKEYGDVVESGLLFADPAVVDRETDELIEKAIAFKLAYRQQY
                     QQKAGWNYEPSFC"
     gene            complement(1272..1499)
                     /locus_tag="OQQ75_003910"
     CDS             complement(1272..1499)
                     /locus_tag="OQQ75_003910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1978058.1"
                     /translation="MFKSDVINFYGTKAKVAKAAGVDPSAVSQWQELVPEGRAMRLQE
                     ASGGELLYDPKVYDEYRKTKRAGRLNNENHS"
     gene            1577..1984
                     /locus_tag="OQQ75_003911"
     CDS             1577..1984
                     /locus_tag="OQQ75_003911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001003380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1978059.1"
                     /translation="MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTA
                     PRGQNLHRLAEVLQCSPTWILFGDEDKTPAPPVSLDSTLDLSEDELEMLRLYRALPKS
                     EQQAQLSELRARVENFNRLFTELLEARKRNKHQ"
     gene            2177..2332
                     /locus_tag="OQQ75_003912"
     CDS             2177..2332
                     /locus_tag="OQQ75_003912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 family protein"
                     /protein_id="HCS1978060.1"
                     /translation="MDTIDLGNNESLVYGVFPNQDGTFTAMTYTKSKTFKTENGARRW
                     LERNSGE"
     gene            2492..2710
                     /locus_tag="OQQ75_003913"
     CDS             2492..2710
                     /locus_tag="OQQ75_003913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310310.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978061.1"
                     /translation="MQKREPVIIAPDYTDDELYEWMHQKINAAQDLKWANEARAKQAE
                     NLSALEQDITNLEKAAALSIARMITYPR"
     gene            3279..3467
                     /locus_tag="OQQ75_003914"
     CDS             3279..3467
                     /locus_tag="OQQ75_003914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000854559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibition protein DicB"
                     /protein_id="HCS1978062.1"
                     /translation="METLLPNVNTSEGCFEIGVNISNPVFTEDAINKRKHERELLNKI
                     CILSMLARLRPIQKGCWQ"
     gene            3464..3655
                     /locus_tag="OQQ75_003915"
     CDS             3464..3655
                     /locus_tag="OQQ75_003915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1482 family protein"
                     /protein_id="HCS1978063.1"
                     /translation="MNTAFALVLTVFLVSGEPVDIAVSVHRTMQECVTAATEQKIPGN
                     CYPVDKVIHQDNNEIPAGL"
     gene            3748..>5864
                     /locus_tag="OQQ75_003916"
     CDS             3748..>5864
                     /locus_tag="OQQ75_003916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS1978064.1"
                     /translation="MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQF
                     LEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYMQENRWDEESASFVPVETESDPM
                     NVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEV
                     NAMYPELKLHAIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARA
                     RTNQQHSENSTGKISPVIAAIHREYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWA
                     KNEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDIHKDPVALNKYITEY
                     LTTKGVFEDEGRNQSATDTLSSPVPETDAVETAIPGNEKTECKVEVEPSVEREGPFYF
                     LFTDKDGEKYGRANKLSGLEKALALGATEITKEEYFARKNGTYSGSQQNTGASDTTAQ
                     PEPVKVTADEVNKIMQAANISQPDADKLLAASRGEFVAGISDPNDPKWVKGIETRDSV
                     NQNQQESEQNDQKAEQNSPNTQQNEPETKQPEPVAQQEPEKVCTACGQSGGGNCPDCG
                     AVMGDATYQETFDEENQVEVQENDPKEMEGAEHPHKENAGSAQDHASDSETGETADPL
                     ITMNGHHVITSTSRTCDHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTID
                     LETAGGVIDRDVIKRWLKQSREA"
BASE COUNT         1662 a         1429 c         1379 g         1394 t
ORIGIN      
        1 gcggttcatg tggcttctgc catccagcat ccgcattgtg cgcacatcat tggcccagac
       61 agtccagtta ggctcttttg gtcgcatgat ctcgccatca tcactggcgg cctgttcgta
      121 gagacccacg atccgccccc atatccactg cgcacacgcc agatcctcct ggctacccca
      181 ctggcgtttt ttcgcactaa acacaactgc gccagggtgc cggattaaaa aatcctgttc
      241 agccgtctgc gggtccggtt gcgaagcttc cggacgaaaa gtgtttttat tctctgtagt
      301 aatctctgtt gtattctctg taggatcatc gggccatttt gacccgatga cattgggtcg
      361 ttttgaacca atggagcgtt tcattttgac ctcttccatc gtgtcatttt gacctgatgg
      421 agcggcgcat tttgaaccga tggattcgct caatttgcca tcatctaaaa gctcgctccc
      481 atagttaatc gtgtagaaat tggtcatatc gcgctttgat ttattgagct tttcacaacg
      541 caagagcccc agcgttttca gacttgcaaa cgcgcgcttt aacgttgact ctgaccagaa
      601 tgggaactgt tccagccatt gttccgttgt gttgtaaatc cagcgaacac catcacattc
      661 catgccggaa ttggtatctc tcaaccagta atgcaactgc tgcaacacaa tggcttcatt
      721 taagccaatc ttcatcgcaa gctgtgtgtt tataaccagt gggcgttcag caaaaagaag
      781 gctcataatt ccatccagct ttttgttggt attgctgtcg atacgcaagt ttgaaagcaa
      841 ttgctttttc tataagttcg tcagtttcac gatccactac ggcaggatca gcaaaaagca
      901 gtccggactc caccacatcg ccatattctt tgtttaaccc ggcgatcatg tacgtgatgc
      961 tttttccgtc actaatttca cgatacaacc tgaaatcatt aatccggata gcctccataa
     1021 ttgcaggcac tagcgccgtg aacttttcac gcttatccct ggtgtcgata gccttccagc
     1081 gttcgaatat cttcactcga ttaacgccaa gcgctcgctg atcaaccgcg ccaccttcat
     1141 ctgtgacacg ctgaacatcg atgttcgggc gctctttcaa agcccagaat gcttcagtga
     1201 ttaatatcgt cgcctgctcc tgtgtcattc ctggtcgaca tatccaggca tccagagcct
     1261 cacgagcctg ttcaggagtg attttcattg ttcaaccgcc ccgcccgctt cgtcttacga
     1321 tattcgtcat aaaccttggg atcatacaga agctcgccgc cagatgcctc ctgtagacgc
     1381 atcgcgcgac cttcaggaac tagctcttgc cattgagaaa cagcagatgg gtcaacgcca
     1441 gcagctttcg ctactttggc tttcgtaccg taaaaattaa ttacgtctga tttaaacatc
     1501 gcacctccaa tattgagttt tctcaatgct aatcactcaa ggaatctcaa gtcaaggatt
     1561 attaagatat ctaaatatga acgagaaaac tttaggtcaa cgcattagag aaagacgtaa
     1621 gcaggtaggc ttaagtcaaa acggtttaag caaagctgct ggcgtatctg gctcatcaat
     1681 ttcattatgg gaaagtgacc atacagcccc gcgcgggcaa aatttgcatc gcctcgccga
     1741 ggtattgcaa tgttcaccaa cctggatact gtttggcgac gaggacaaaa caccagctcc
     1801 ccctgtttca ctcgatagta ccctagactt atcggaagat gagttagaga tgctgcgttt
     1861 gtatcgcgca cttcctaaat cagagcaaca agcacaactc agcgaactcc gcgcccgcgt
     1921 tgagaatttt aatcgcctgt tcaccgagct attagaggct cgcaaacgca acaagcatca
     1981 ataatcatcc cttcacaaaa ttttaaagcc ttacatttca atgtattggc tttatcttgc
     2041 gccagcactt gagttttctc atcaaaaaac cttgacgaaa aataatgaga aaactaaatt
     2101 acctccatca acacaccgca cggtgttctc cgcaaacagt tccgctaccc cggcgttaag
     2161 gggaaatgag gtcagcatgg atactatcga tcttggcaac aacgaatctc tggtgtacgg
     2221 cgtgtttcca aaccaggacg gcacgttcac cgcaatgacg tataccaaaa gcaaaacgtt
     2281 taaaaccgaa aatggtgccc gtcgctggct ggaaagaaac tcaggtgagt gatatggatt
     2341 tcgacacaat catggaaaag gcttacgaag aatacttcga aggccttgcc gaaggcgaag
     2401 aagctctcag cttcagtgag tttaaacagg cgctttccag ctcggcaaaa tctaacggct
     2461 gataagcgaa gcagcaccgc gaggaatcag tatgcagaaa cgagaacccg tcatcatcgc
     2521 gccagactat accgatgatg aactttatga gtggatgcac cagaaaatta atgcagcgca
     2581 ggatctgaaa tgggccaatg aagccagggc taagcaggct gaaaatctgt ccgctctgga
     2641 gcaggatatc actaatctgg aaaaagcagc ggcattaagc attgccagaa tgattacata
     2701 cccgcgttaa tagctaacca acgaagctaa ggttggtaat taaggagttc tccacgggtg
     2761 aggtggagtg cgtgcgccgg acacgggtga gcatccggca ctgacagttt actgaaagga
     2821 tatttccctg aaaagtcaga ccataacgcg aaagcgcacg gcgaggtagc tggttcatag
     2881 atagcctgtc gttaaatttt cgtcgaccgt gcgcttccgg ttgtggcaat ccgcgaaatg
     2941 gcgcggcggt aagtatggcg gggttattcc ttccaccgtt gaggacaccg ggttgtcagg
     3001 ttgaccatac gcttaagtga caaccccgct gcaacgccct ctgttatcaa ttttctggtg
     3061 acgtttggcg gtatcagttt tactccgtga ctgctctgcc gcccttttta aagtgaattt
     3121 tgtgatgtgg tgaatgcggc tgagcgcacg cggaacagtt aaaaccaaaa acagtgttat
     3181 gggtggattc tctgtatccg gcgttaattg ttaactggtt aacgtcacct ggaggcacca
     3241 ggcaccgcat cacaaaattc attgttgagg acgcgataat ggaaacgtta ttaccaaacg
     3301 ttaatacgtc tgaaggttgt tttgaaattg gtgtcaatat cagtaaccct gtatttactg
     3361 aagatgccat taacaagaga aaacacgaac gggagctatt aaataaaata tgcattcttt
     3421 caatgctggc ccgtttacgt ccgatacaaa aaggatgctg gcaatgaata cagcatttgc
     3481 acttgttctg acagtttttc ttgtttccgg agagccagtt gatattgcag tcagtgttca
     3541 caggacaatg caggagtgtg tgactgcagc aaccgaacag aaaattcccg gtaactgtta
     3601 cccggtcgat aaagttattc accaggataa taacgaaatc ccggcaggtc tttaaaacag
     3661 ttccgtaata aatatccggt ttcattctta tatgccagca atggcaggga tttgttcacc
     3721 cttaaatctg taatgaggta aaacaaaatg agtaaagtct ttatttgcgc cgccattccg
     3781 gacgaacagg caataaagga agaaggtgcc gtcgctgtag ccacagccat tgaagccggt
     3841 gatgaacgtc gcgcccgcgc aaaatttcac tggcaattcc tggagcatta tccggctgct
     3901 caggactgcg cttataaatt tcttgtctgc gaggataaac ccggtatacc ccgccctgcc
     3961 ctcgattcct gggatgctga atatatgcag gaaaaccgct gggatgagga gtctgcttcc
     4021 tttgtcccgg ttgagactga atccgatccg atgaacgtca cttttgacaa gctggcccct
     4081 gaagtacaga acgctgtcat ggttaagttc gacacatgtg aaaacatcac cgttgatatg
     4141 gttattagcg cacaggaatt gttgcaggaa gacatggcaa cattcgacgg acatatcgtt
     4201 gaagcgttga tgaaaatgcc agaagttaac gccatgtatc cggagcttaa gctgcatgcc
     4261 atcgggtggg ttaagcataa atgtaagcct ggtgccaaat ggcccgaaat tcaggcagag
     4321 atgcgcatct ggaaaaaacg tcgcgaaggt gaacgcaagg aaaccggaaa atacacgtct
     4381 gttgttgatc tcgcccgcgc cagaaccaat caacagcaca gtgaaaattc aacaggaaaa
     4441 atcagcccgg tcattgctgc cattcatcgc gaatacaagc agacatggaa aacactggat
     4501 gacgaactgg cctacgctct ctggcctggt gatgtggatg ccggaaacat tgacggcagc
     4561 atccatcgct gggcaaaaaa tgaagttatc gacaacgacc gcgaagactg gaagcgtatc
     4621 tcggcatcaa tgcgcaaaca gcctgatgcc cttcgctacg accgccagac tatttttggc
     4681 cttgtccgtg aacgtccgat cgacattcac aaagaccctg tggcactgaa caaatacatt
     4741 actgaatacc tgactacaaa gggcgtgttt gaagatgaag gaagaaatca gagcgcaact
     4801 gatactctct cgtcgccagt accagaaact gatgcagtgg aaacggcaat tccgggcaac
     4861 gaaaaaaccg aatgcaaagt ggaagtcgaa ccatctgtag agcgtgaggg gccgttctac
     4921 ttcctcttca ccgacaagga tggcgaaaaa tacggtcgcg caaacaaact ttctggtctg
     4981 gaaaaagcac tagccttggg agctacggaa atcacaaaag aggaatactt cgcacgtaaa
     5041 aacggcacgt actcaggttc acaacaaaat actggtgcat ctgacacgac cgcacaacca
     5101 gagccggtaa aagttaccgc tgacgaagta aacaaaatta tgcaggcagc caatatcagc
     5161 cagcctgacg ccgataagtt gcttgctgcc tctcgcggag aatttgttgc agggattagc
     5221 gacccgaatg atccgaaatg ggtaaagggg attgaaaccc gcgattctgt aaaccagaac
     5281 cagcaagaat cggaacagaa cgaccagaaa gcggaacaaa acagcccaaa tacgcaacaa
     5341 aacgagccag aaacgaaaca acctgagcca gtagcgcaac aggaaccgga aaaagtctgc
     5401 accgcctgcg gtcaaagcgg tggcggcaac tgccctgatt gtggcgcggt gatgggtgac
     5461 gcaacatacc aggaaacatt cgatgaagag aatcaggttg aagttcagga aaatgatccg
     5521 aaggaaatgg aaggcgctga acatccacac aaggagaatg ctggtagcgc tcaggatcac
     5581 gccagcgata gtgaaactgg cgagacggca gatcccttaa ttacgatgaa cggtcatcac
     5641 gttatcacat ccaccagcag gacgtgtgac catctaatga tcgaccttga aaccatggga
     5701 aaaaatcctg atgccccgat tatctcaata ggtgcaatat ttttcgatcc gcaaaccgga
     5761 gatatgggac cggaatttag taagactatc gatctggaaa ctgctggcgg agtcattgat
     5821 cgtgacgtca ttaaaaggtg gctgaagcaa tcacgtgaag cgca
//
LOCUS       DAJVUP010000213         5591 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.213, whole genome shotgun sequence.
ACCESSION   DAJVUP010000213 DAJVUP010000000
VERSION     DAJVUP010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5591
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.213"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ75_003917"
     CDS             complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ75_003917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HCS1978065.1"
                     /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ
                     DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH
                     PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
                     TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM
                     ENSYRQMQMNAQAEKVAKIIAANSSNT"
     gene            907..1887
                     /gene="rluD"
                     /locus_tag="OQQ75_003918"
     CDS             907..1887
                     /gene="rluD"
                     /locus_tag="OQQ75_003918"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017383977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HCS1978066.1"
                     /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR
                     VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDL
                     VVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE
                     SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF
                     RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR
                     QALHATMLRLYHPISGIEMEWHAPIPEDMVELIEVMRADFEEHKDEVDWL"
     gene            1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ75_003919"
     CDS             1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ75_003919"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HCS1978067.1"
                     /translation="MSKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP
                     EHVEENRKQLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV
                     MTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPR
                     AFEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY
                     TENETFFSYRRDKTTGRMASFIWLI"
     gene            2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ75_003920"
     CDS             2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ75_003920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HCS1978068.1"
                     /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG
                     SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG
                     DNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA
                     LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF
                     IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ
                     KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID
                     LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD
                     KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE
                     LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL
                     HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD
                     SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL
                     VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE
                     ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV
                     Q"
BASE COUNT         1391 a         1335 c         1516 g         1349 t
ORIGIN      
        1 ctcaagggct gccgttttgt gtttcaggtt tctgttatgt attgctgctg tttgcggcga
       61 tgattttcgc tactttttca gcttgcgcat tcatctgcat ctgacggtat gaattttcca
      121 tcagtggcag cgcatcacgc gtagcctggg tatccgggta gtcgcgcaac atgccttcta
      181 cgcggttaac gacggcaacc catgcaccac gttctgtata gtactcggca acggagtatt
      241 catatttcgc cagacgatct ttcaggaata ccagacgttt ggttgcatcg gtagtgtact
      301 gactgttcgg atagccgcgc accagtttgg aaaagtcact aaacgcagct cgtgcatgtt
      361 gaggatcgcg atcgctacgg tcaacgccaa agaacccttg cagcgcactg tcatccagcg
      421 ccatattggt caggccacgc atgtacatga cataatcgat attcggatgg gtcgggttaa
      481 ggcgaataaa acgatcgatg gcagcctgtg ctaacggcaa atcggcgttt ttatagtagg
      541 cgtagatgag atccagctgc acctgctgcg aatacggacc aaacggatag cgattatcta
      601 atgcttccag ttgcgttatt gcctgtctcc agttaccgtc ctgcagcttt tgttgtgcag
      661 tcgcgtaaat ttcatttggt ggattatcag gtacttcttc ctttgacccc gagcaacccg
      721 ccaaaaacag gcttagtgtg gcggctgcca ccagatattt catgcgcgtc atgacgtttt
      781 gactttcctc aaaatgtaat acgggagatt ctctgttcct gctcccggtt aagaccagct
      841 acaatagcac actatattaa acggcaaagc cgtaaaaccc caacgataaa cgaagaagca
      901 gtatatatgg cacaacgagt acagctcact gcaacggtgt ccgaaaacca actcggtcaa
      961 cgcttagatc aggctttggc cgaaatgttc ccggattatt cacgttcgcg aataaaagaa
     1021 tggatcctcg accagcgcgt gctggtaaac ggcaaagttt gtgataagcc gaaagaaaaa
     1081 gtattgggtg gcgagcaggt tgccatcaac gctgagattg aagaagaagc gcgttttgaa
     1141 ccgcaggata tcccgctgga tatcgtctat gaagatgaag atatcatcgt cattaataaa
     1201 ccgcgcgacc tggtggtaca tcctggcgcg ggtaacctgg atggcacggt actgaatgcg
     1261 ttgcttcatt attatccgcc cattgccgat gtaccgcgtg cgggcatcgt ccatcgtctg
     1321 gataaagaca ccactggcct gatggttgtg gcaaaaaccg ttccggctca gacgcgttta
     1381 gtcgaatctt tgcaaaggcg tgaaattact cgtgagtatg aagcggtggc aattggtcat
     1441 atgaccgctg gcggtacagt agatgaacca atcagccgcc acccgaccaa acgtactcac
     1501 atggcggtgc atcccatggg caaaccggcg gtcactcact atcgcatcat ggaacacttc
     1561 cgtgtgcaca cgcgtctgcg gttgcgtctg gaaaccggac gtacgcacca gatccgcgtg
     1621 catatggcgc atattaccca tccgctggtg ggcgatccgg tttatggtgg ccgtccgcgt
     1681 ccgccaaaag gtgcttcgga agcgtttatc tccacgctgc gtaagtttga ccgccaggcg
     1741 cttcatgcaa ctatgctgcg tctttatcac ccgatctccg gcatcgaaat ggaatggcat
     1801 gcgcctattc cagaagatat ggtggagttg attgaggtta tgcgcgccga tttcgaagag
     1861 cataaggatg aagtggactg gttatgagta agctgattgt cccgcagtgg ccgctgccaa
     1921 aaggtgttgc ggcctgtagc tctacccgta tcggcggcgt gagcttgcca ccttacgact
     1981 ctctcaacct tggcgctcat tgtggtgata acccggagca cgtagaggag aatcgcaagc
     2041 aactttttgc tgcgggaaat ttgccttcaa aaccggtctg gcttgagcag gtacacggca
     2101 aagatgtgct taagctcact ggcgaacctt atgcctcaaa acgggcggat gcctcttata
     2161 gcaatacgcc cggcacggtt tgcgcagtga tgactgccga ctgcctccct gtgctgtttt
     2221 gcaatcgagc gggaacggaa gtcgccgccg ttcatgctgg ctggcgtgga ctgtgcgcag
     2281 gcgtgctgga agagacggtt tcctgttttg ctgataaacc tgaaaacatt ctcgcctggt
     2341 tagggccggc aattggtcca cgcgcgttcg aagtgggggc ggaggttcgc gaggcgttta
     2401 tggcagtaga cgctaaagca agtgcagctt tcattcagca tggtgataag tatctggcgg
     2461 atatttatca gcttgcccgg cagcgtctgg cgaacgtggg tgttgagcaa attttcggcg
     2521 gcgaccgttg tacatatacg gaaaatgaga ctttcttctc ttatcgtcgc gacaagacca
     2581 ccggtcgtat ggcaagtttc atttggctga tataacctaa agaatcaaga cgattcggta
     2641 cgcgtgattt tcttttcaca ttaatctggt caataacctt gaataattga gggatgacct
     2701 catttaatct ccagtagcaa ctttgatccg ttatgggagg agttatgcgt ctggatcgtc
     2761 ttactaataa attccagctt gctcttgccg atgcccaatc acttgcactc gggcacgaca
     2821 accaattcat cgaaccactt catttaatga gcgccctgct gaatcaggaa gggggttcgg
     2881 ttagtccttt attaacatcc gctggcataa atgctggcca gttgcgcaca gatatcaatc
     2941 aggcattaaa tcgtttaccg caggttgaag gtactggtgg tgatgtccag ccatcacagg
     3001 atctggtgcg cgttcttaat ctttgcgaca agctggcgca aaaacgaggt gataacttta
     3061 tctcgtcaga actgttcgtt ctggcggcac ttgagtctcg cggcacgctg gccgacatcc
     3121 tgaaagcagc aggggcgacc accgccaaca ttactcaagc gattgaacaa atgcgtggag
     3181 gtgaaagcgt gaacgatcaa ggtgctgaag accaacgtca ggctttgaaa aaatatacca
     3241 tcgaccttac cgaacgagcc gaacagggca aactcgatcc ggtgattggt cgtgatgaag
     3301 aaattcgccg taccattcag gtgctgcaac gtcgtactaa aaataacccg gtactgattg
     3361 gtgaacccgg cgtcggtaaa actgccatcg ttgaaggtct ggcgcagcgt attatcaacg
     3421 gcgaagtgcc ggaaggattg aaaggccgcc gcgtactggc gctggatatg ggcgcgctgg
     3481 tggctggggc gaaatatcgc ggtgagtttg aagaacgttt aaaaggcgtg cttaacgatc
     3541 ttgccaaaca ggaaggcaac gtcatcctgt ttatcgacga attacatacc atggtcggcg
     3601 cgggtaaagc cgatggcgca atggacgccg gaaacatgct gaaaccggcg ctggcgcgtg
     3661 gtgaattgca ctgcgtaggt gccacgacgc ttgacgaata tcgccagtac atcgaaaaag
     3721 atgctgcgct ggaacgtcgt ttccagaaag tgtttgttgc cgagccttct gttgaagata
     3781 ccattgcgat tctgcgtggc ctgaaagaac gttacgaatt gcaccaccat gtgcaaatta
     3841 ctgacccggc aattgttgca gcagcgacgt tgtctcatcg ctacattgct gaccgtcagc
     3901 tgccggataa agccatcgac ctgatcgatg aagcagcatc cagcattcgt atgcagattg
     3961 actcaaaacc agaagaactc gaccgactcg atcgtcgtat catccagctc aaactggaac
     4021 aacaggcgtt aatgaaagag tctgatgaag ccagtaaaaa acgcctggat atgctcaacg
     4081 aagaactgag cgacaaagaa cgtcagtact ccgagttaga agaagagtgg aaagcagaaa
     4141 aggcatcgct ttctggtacg cagaccatta aagcggaact ggaacaggcg aaaatcgcta
     4201 ttgaacaggc tcgccgtgtg ggggacctgg cgcggatgtc tgaactgcaa tacggcaaaa
     4261 tcccggaact ggaaaagcaa ctggaagccg caacgcagct cgaaggcaaa actatgcgtc
     4321 tgttgcgtaa taaagtgacc gacgccgaaa ttgctgaagt gctggcgcgt tggacgggga
     4381 ttccggtttc tcgcatgatg gaaagcgagc gcgaaaaact gctgcgtatg gagcaagaac
     4441 tgcaccatcg cgtcattggt cagaacgaag cggttgatgc ggtatctaac gctattcgcc
     4501 gtagccgtgc ggggttggcg gatccaaatc gcccgattgg ttcattcctg ttcctcggcc
     4561 caacgggtgt ggggaaaact gagctttgta aggcgctggc gaactttatg tttgatagcg
     4621 acgaggcgat ggtccgtatc gatatgtccg agtttatgga gaaacactcg gtgtctcgtc
     4681 tggttggtgc gcctccggga tatgtcggtt atgaagaagg tggctacctg accgaagctg
     4741 tgcgtcgtcg tccgtattcc gtcatcctgc tggatgaagt ggaaaaagcg catccggatg
     4801 tcttcaacat tctgttgcag gtactggatg atggtcgtct gactgacggg caggggagaa
     4861 cggtcgactt ccgtaatacg gttgtcatta tgacctctaa cctcggttcc gatttgattc
     4921 aggaacgctt cggtgaactg gattatgcgc acatgaaaga gctggtgctc ggtgtggtaa
     4981 gccataactt ccgtccggaa ttcattaacc gtattgatga agtggtggtc ttccatccgc
     5041 tgggtgaaca gcacattgcc tcgattgcgc agattcagtt gaaacgtctg tacaaacgtc
     5101 tggaagaacg tggttatgaa atccacattt ctgacgaggc gctgaaactg ctgagcgaga
     5161 acggttacga tccagtctat ggtgcacgtc ctttgaaacg tgctatccag cagcagatcg
     5221 aaaacccgct ggcacagcaa atactgtctg gtgaattggt tccgggtaaa gtgattcgcc
     5281 tggaagttaa tgaagaccgg attgtcgctg tccagtaatg ataaaacgag cccttcgggg
     5341 ctcgtttttg tctataagtt agacggaaaa gactatattt aagatgtttt gcctgaaaaa
     5401 tgagcgaacg ataaagtttt tatatttttc gcttgtcagg ccggaataac tccctataat
     5461 gcgccaccac tgacacggaa caacggcaaa cacgccgccg ggtcagcggg gttctcctga
     5521 gaatctcaac agagaaaagc aaaaaaatgc ttgactctgt agcggggaag cgtattatgt
     5581 acaccccgcg c
//
LOCUS       DAJVUP010000214         5585 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.214, whole genome shotgun sequence.
ACCESSION   DAJVUP010000214 DAJVUP010000000
VERSION     DAJVUP010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5585
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.214"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..401)
                     /locus_tag="OQQ75_003921"
     CDS             complement(<1..401)
                     /locus_tag="OQQ75_003921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1978069.1"
                     /translation="MGILEQEMKRLAQQAGGSHKTVHDRIKLVQRFCERLVLAQNVQI
                     RRVEQLKARYIEGYVRERLAQGITKRSLQNEMAAVRCILKQAGRDRLAQSERLNNRSL
                     GLSGASRNGTKRAITPEHYRHVLETARAKDPG"
     gene            960..1106
                     /locus_tag="OQQ75_003922"
     CDS             960..1106
                     /locus_tag="OQQ75_003922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000285696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978070.1"
                     /translation="MYRIKTLASVAMFCDPVFAEVCTGKRIDRPDNRRFFQVVKRWAL
                     STTA"
     gene            complement(1266..1583)
                     /locus_tag="OQQ75_003923"
     CDS             complement(1266..1583)
                     /locus_tag="OQQ75_003923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016161430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HCS1978071.1"
                     /translation="MDRGEIWLVSLDPTTGHEQSGKRPVLIVSKASFNTFTRLPVVVP
                     VTSGGNFAREAGFTVSLDGAGTKTTGVIRCDQPRTIDMGARSGKRLERIPDAVVNEVL
                     ARL"
     gene            complement(1584..1841)
                     /locus_tag="OQQ75_003924"
     CDS             complement(1584..1841)
                     /locus_tag="OQQ75_003924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000557619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HCS1978072.1"
                     /translation="MYTTRLKKVGGSVMLAVPPAVLKTLGLSTDSEVGMTIDNGCLII
                     EPQKRPRYSLEELLAQCDPHAEISEEGREWIDAPAVGKEIL"
     gene            complement(2190..2396)
                     /locus_tag="OQQ75_003925"
     CDS             complement(2190..2396)
                     /locus_tag="OQQ75_003925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003842122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1978073.1"
                     /translation="MMLQDWHPADIIAGLKKRGTSLSALSRQAGLASSTLANALTRRW
                     PKGERLIAEALGIKPEQIWPSRYR"
     gene            complement(2393..2854)
                     /locus_tag="OQQ75_003926"
     CDS             complement(2393..2854)
                     /locus_tag="OQQ75_003926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000201268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978074.1"
                     /translation="MATIPTQTHPLLAVPFSAATDFTVLADHCENVAETLIESEDPVL
                     RLALCGRLAACLTLLQPTLNDPIPSHLTDSLTVDALPADMPRFVPDAELLCDYSLTLA
                     QLLIGQGMQPKVEQTITGLLCELVWYFAAEMKAPRWLRTADGVKFIDEVAA"
     gene            complement(3225..4829)
                     /locus_tag="OQQ75_003927"
     CDS             complement(3225..4829)
                     /locus_tag="OQQ75_003927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978075.1"
                     /translation="MITKELVDESNFISQLVDIGRFDESYQQSVAFLNKLERITIRND
                     NYFIVLANIAGALVDIGQMQNNKNASELGCNLMEDNKEAFISVLGECLYYYNYGNALS
                     NLVSITNPNDHTFKSIEELVSLKNIYWRSFKLSAEEQEEFQAELSVNLANSLRSQFRL
                     SESLRYYDLTNLKGLDIPQAWVNRSMSLMVLNLISSSFSIKLLKEVRAGYIKASVSKN
                     IPPQWESFYLERIAQTNEKIAEYAVDDETDEHDEALTQQEFEVLSPYRQFCLRNHLTL
                     SEHGLYCPCVGSATDDLVIASRGGVTGDFIIPMEMVLNRLKSEFSLARHLYFDYLHPQ
                     NTDYIKYESHFLELYNDEVLGIEIEKIRTAFRLCFGILDKIAVAICELYNLYPTTKKG
                     TPQKNIYFQNFWQLDVDNRRQLFEKVKSPGLLALYSIATDLNKDKGGELAFYKEWRNG
                     LEHKFLVVHKSDKPEDIYESYQLIEDILFIKESDFIHHFEHLLQITRSAIFSFAFMVR
                     QEGMKEKKEGIHYMTRELHAINYSAD"
     gene            complement(4842..5207)
                     /locus_tag="OQQ75_003928"
     CDS             complement(4842..5207)
                     /locus_tag="OQQ75_003928"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978076.1"
                     /translation="MVSDKRADIIVSLPQIKIPIEIKRDYHRDVWTALNGQLDKLYTK
                     NPDAAGHGIYLVFWFGSARPNSLPHLAKNTSQPENASAMENMLNETVPVDKRDRLSAI
                     VIDVSCEGIPPVEAPKSSV"
     gene            complement(5235..5444)
                     /locus_tag="OQQ75_003929"
     CDS             complement(5235..5444)
                     /locus_tag="OQQ75_003929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001044500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978077.1"
                     /translation="MNKTPANIMDLYSLLLDHIRDISNRIANENTDIYKQFWNEDSYG
                     RTLTPKPEESCRNIFLDLLRVRLNP"
BASE COUNT         1444 a         1343 c         1304 g         1494 t
ORIGIN      
        1 cccggatctt ttgcgcgggc ggtttccagc acatggcggt aatgctccgg cgtgatggcc
       61 cgcttcgtac cgttacggga tgcgccagac aggcccagcg agcggttatt cagtcgctca
      121 ctctgcgcca gcctgtcacg cccggcctgt ttcagaatgc agcgcaccgc cgccatctca
      181 ttttgcaggg aacgcttcgt gataccctgc gccagtcgtt cacgaacata tccctcaata
      241 taccgcgcct taagctgctc cacccggcgg atctgcacat tctgtgccag aaccagacgc
      301 tcacaaaacc gctgcaccag cttaatacgg tcgtgaacgg tcttatggct gccgcccgcc
      361 tgttgtgcca atcgcttcat ttcctgctcc agaatcccca tacattcccc ctttcatgat
      421 tgccgcaaac tcatccccaa aaactcaaca ctgatacagc gttccccggc gcacaggccg
      481 atagcccctg agttttgtcg gggctgcgaa cgatacctga gcgccggggc ggcagccgtt
      541 gaggtgtggt ggggcttcgg ttgtgctctc agagcagccg cccgcttgcg cgggtcatcc
      601 cccggatcgt ccagatccgc ctcggtatcg gttcatattc tccttatggg taaatggcct
      661 aaaaaggcgg tgtcagaatc cagccatgag ctggcgcagt tgagttttct ggtgcaggtc
      721 gaaagggctt gcgtgcgtca ctttcccgct ttgcgcggtt aaagtgacgc acggatctgg
      781 tgcagcatct gagatttatc gtctggtgca gttttacggt cacgcggcag caaagcctga
      841 cggcaatgca ggccgcagcc cgtaaggtaa aaggcgctga gggtgtcagc agatgcaggt
      901 tagccgggag aattccggcg cggtgcagat tcagaccagc aggctggcga agtaaaagga
      961 tgtatcgtat taaaactctg gcctccgtcg cgatgttctg cgacccggtg tttgcagagg
     1021 tctgcaccgg taaacggatc gaccgtcctg ataacaggcg cttctttcag gttgtgaagc
     1081 gttgggcgct gtctacgaca gcatagagca agggggagac tacgcctgtg ccgctggcgc
     1141 ggaaaggaga aactgttttt acctgcaaaa ggatttttta atcacttgtt gttataaaaa
     1201 atgagggcgc tgtatgtgac agcgccctcg ttcaggttac ataaaaaata tcagctcaga
     1261 atagcttaca gtcgagccag cacctcattc acgacagcat cgggtatacg ttccagccgc
     1321 ttaccgctcc gagctcccat atcaatggtt ctgggctggt cgcagcgaat aacgcccgtt
     1381 gtttttgttc ccgccccgtc cagtgaaacg gtaaaaccgg cttcgcgggc aaagtttccg
     1441 ccgctggtga cagggacaac aacaggcaac cgggtgaacg tgttaaacga tgccttcgat
     1501 acgatgagta ccggacgttt tccactttgt tcatggccag tggtgggatc cagtgaaacg
     1561 agccagattt ctcctctgtc catctacagg atctccttgc ccaccgcagg cgcatcaatc
     1621 cattcccgac cctcttcgct tatttcagcg tgcggatcgc actgcgccaa cagttcttcg
     1681 agcgaatagc ggggacgttt ttgaggttca ataatcaggc agccattatc aatggtcatg
     1741 cccacttcgc tgtccgtcga cagccctagc gttttcagca ctgcgggggg aaccgccagc
     1801 atgacggatc cgccaacctt tttcaggcga gtggtataca tagagcacct ccggatatta
     1861 tattttaata taacatccat gatagacgat gcacaactat tcatcagatt cattgtggtt
     1921 tccttagtgt aataaagcgt gaagaaagcc ttaatccatc ggaagacaga tccggcagtt
     1981 ttcaaaggcg acattgccgg taaaagggca accgtcctga tacatcaggc gcttctttca
     2041 ggtcatgaag catttcgtac aggcgggagc ttagtgcgta acaaagaagg ccgataatag
     2101 gaaactgctt ttgcagttca aaggattatg acggttcgga taaacaaaat gcggcgcagc
     2161 ttccgtatcc gggctgcgcc gcaggaacat cagcggtagc gcgaaggcca gatttgctca
     2221 ggcttgatgc ctaacgcttc ggcaattaac ctttcgcctt tgggccagcg gcgggtaagc
     2281 gcattagcca gcgtggagga cgccagacct gcctgacgcg aaagcgctga cagcgaagtg
     2341 cctcgttttt tcagcccggc gataatgtcg gcaggatgcc agtcctgcag catcatgcag
     2401 ccacctcgtc gataaacttc acgccatcgg cggtgcggag ccagcgcggg gctttcattt
     2461 cggcggcaaa ataccagacc agttcacata ataagcctgt tatcgtctgc tccacttttg
     2521 gctgcatccc ctgcccgata agaagttgcg ccagcgtcag tgagtaatca caaagtaatt
     2581 ctgcgtcggg gacaaatcgg ggcatatcgg caggtagagc atcaacggtc aggctgtcag
     2641 tcagatgaga cgggatgggg tcgttcagcg tgggttgcag caaagtgaga caggcggcaa
     2701 gtcgcccgca aagcgccagc cgcagcaccg gatcttcgct ttcgatcagg gtttcggcga
     2761 cgttttcgca gtggtctgcc agtacggtaa aatctgtggc agcactgaag ggaacagcaa
     2821 gtaacgggtg tgtctgagtg gggatcgtag ccataaaggc agcctccagt atgtggtttg
     2881 aaaaccacca ccagaggttc caatctcatg ggtggtggac tgaacgaggt tggaactacc
     2941 ggccatactg gaaccggcgc accttacggt gcccccgccc agcccaccat aattttggtg
     3001 tagctaagcg cgcgacataa aaaaagacgc agacgcgtca cgtgtcgcca gtatggttat
     3061 atttcggggt tccaatcccg gcacctgatt ttgcaggtgc gggtaaaaga taccgctttc
     3121 ggttgaaaac ggcaagggga agtcgtggaa tagagatcgc agattgttat aaatatacac
     3181 aatagttaat gttaacaaag acggcacata tattaacttt actctcaatc tgctgaatag
     3241 tttatcgcat gtaattctcg ggtcatatag tggataccct ccttcttttc tttcatcccc
     3301 tcttgcctca ccataaaagc aaacgaaaaa attgctgaac gagttatctg aagtaaatgc
     3361 tcaaaatggt gaataaaatc actttctttg ataaaaagaa tatcttctat tagttgataa
     3421 gattcgtaaa tgtcctcagg tttatcactt ttatgtacaa ctaaaaactt atgctctaaa
     3481 ccattgcgcc attctttata gaaagccaac tccccaccct tatctttatt caggtcggta
     3541 gcaatactgt acagcgccag aagccctggt gattttacct tttcaaataa ttgtcttctg
     3601 ttatcaacat ctaactgcca gaaattctga aaatagatat tcttctgagg tgtacctttt
     3661 tttgttgttg ggtaaagatt ataaagttca catatggcta ccgcaatttt atcaagaata
     3721 ccaaagcaaa gacgaaatgc cgtcctgatt ttttcaattt ctattcctaa aacttcgtca
     3781 ttatacaatt ccagaaaatg gctttcgtac ttaatgtaat ccgtattttg tggatgaaga
     3841 taatcaaaat aaagatggcg tgcgagtgaa aactccgatt taaggcgatt taataccatc
     3901 tccatgggaa tgataaaatc acctgttaca ccgcctcgcg aagcaatcac aagatcatct
     3961 gtagcactcc ctacacatgg gcaatacagg ccatgttctg ataaagtcag atgatttcta
     4021 agacaaaact gtcgatatgg gcttaacact tcgaactctt gttgtgtaag tgcttcatcg
     4081 tgttcgtcag tttcatcatc aacagcatat tctgcgattt tctcgttagt ctgcgctatg
     4141 cgttctaaat agaacgattc ccattgtggt gggatatttt ttgatacaga cgctttaata
     4201 tatcctgctc tcacttcttt tagtaacttg attgaaaatg aagatgaaat aagattgagg
     4261 accataagtg acatcgaacg gttgacccaa gcctgtggta tatctaatcc cttaagattg
     4321 gtaagatcat aatatctcaa tgactcactg agccgaaatt gacttcttaa tgaattagcc
     4381 aaattaacag atagttcagc ctgaaattcc tcctgctcct cagcagatag cttaaaagaa
     4441 cgccagtaga tattttttaa ggaaaccaat tcttctatcg atttgaatgt atggtcattg
     4501 gggttagtaa tgctcaccag attagatagc gcattaccat agttataata gtaaaggcac
     4561 tctcctaaca ctgatataaa tgcttctttg ttatcttcca tcaggttgca accaagctct
     4621 gacgcatttt tattattttg catctgcccg atgtcaacaa gagcacccgc aatgttcgcc
     4681 aatactataa agtagttatc gttcctgatt gttattcttt ccagtttgtt caggaacgca
     4741 actgactgtt gataagattc gtcaaatctt ccaatatcaa ccagttggct aatgaaatta
     4801 ctttcatcga caagttcttt tgttatcaaa ataaattttc cttatacaga ggatttcggt
     4861 gcttcaacag gaggtatgcc ctcacaggag acatctataa ctatcgctga taagcggtct
     4921 cttttatcaa ccggcacagt ttcattaagc atattttcca ttgcactggc gttttcaggt
     4981 tgagatgtat ttttcgccaa atgaggcagg gaattcggtc gagcagaacc aaaccaaaaa
     5041 accagataga taccgtgacc agcagcatcg gggtttttag tataaagctt gtccaattgc
     5101 ccattaagtg cagtccagac atcacgatga taatcacgct ttatctcgat aggtattttt
     5161 atctgcggta gtgaaacaat gatatctgcc cttttatcag aaaccatgtg tccttctggt
     5221 tcacagctta ttttttatgg attaagccgg acacggagta aatccagaaa aatattacgg
     5281 caactctctt caggtttagg cgttagggta cggccatagc tgtcttcatt ccagaattgc
     5341 ttataaatat cggtattttc attggcaatt cggttagaaa tatcccgtat atgatcaagc
     5401 aataatgagt aaagatccat tatgttggca ggcgttttat tcatcaatgt acttacagtc
     5461 tgcttccagt cggcatgatg gaactgtgat tctctataac gaattttctg attgctttgg
     5521 gcatgtgaga gatgatcccg ataactttca cattcaggca gcagtaataa gcgctcaagt
     5581 acttc
//
LOCUS       DAJVUP010000215         5439 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.215, whole genome shotgun sequence.
ACCESSION   DAJVUP010000215 DAJVUP010000000
VERSION     DAJVUP010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.215"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..914
                     /gene="adeQ"
                     /locus_tag="OQQ75_003930"
                     /gene_synonym="yicO"
     CDS             <1..914
                     /gene="adeQ"
                     /locus_tag="OQQ75_003930"
                     /gene_synonym="yicO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenine permease AdeQ"
                     /protein_id="HCS1978078.1"
                     /translation="PLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIGDLSSHG
                     VLLGILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGE
                     VDLSGALTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKALYVDSV
                     SSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAMVPPYAT
                     AGALIFVGVLMTSSLAHVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKV
                     CTGRWRDLNLCVVVVAALFALKIILVD"
     gene            967..1419
                     /locus_tag="OQQ75_003931"
     CDS             967..1419
                     /locus_tag="OQQ75_003931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1198 domain-containing protein"
                     /protein_id="HCS1978079.1"
                     /translation="MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVES
                     MVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKAR
                     LAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH"
     gene            1630..2820
                     /gene="nepI"
                     /locus_tag="OQQ75_003932"
                     /pseudo
     CDS             1630..2820
                     /gene="nepI"
                     /locus_tag="OQQ75_003932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418118.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="purine ribonucleoside efflux pump NepI"
     gene            complement(2861..3154)
                     /locus_tag="OQQ75_003933"
     CDS             complement(2861..3154)
                     /locus_tag="OQQ75_003933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978080.1"
                     /translation="MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKI
                     CTPQASLSDEAWEKLMLSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM"
     gene            3376..4194
                     /gene="nlpA"
                     /locus_tag="OQQ75_003934"
     CDS             3376..4194
                     /gene="nlpA"
                     /locus_tag="OQQ75_003934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpA"
                     /protein_id="HCS1978081.1"
                     /translation="MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQ
                     DVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGY
                     KLVAVGNTFVFPMAGYSKKITTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKE
                     GKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDS
                     VFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW"
     gene            complement(4221..5120)
                     /locus_tag="OQQ75_003935"
     CDS             complement(4221..5120)
                     /locus_tag="OQQ75_003935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1978082.1"
                     /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRL
                     IFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATA
                     TVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSLSPAALF
                     WGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLI
                     LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDW
                     LGTLLILSSVILISMDSRRRPEK"
     gene            complement(5231..>5439)
                     /locus_tag="OQQ75_003936"
     CDS             complement(5231..>5439)
                     /locus_tag="OQQ75_003936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1978083.1"
                     /translation="GMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSY
                     HALFWLAIGMLGIAMICLLFIKDI"
BASE COUNT         1299 a         1238 c         1394 g         1508 t
ORIGIN      
        1 ttcccttaag tttacgtatt ggtatcacca gcggaattgg attatttatc gccttaatgg
       61 gattaaaaaa tactggcgtt attgtcgcca ataaagacac gctggtgatg attggcgatt
      121 taagttctca cggcgtgttg ttaggtattt tagggttttt tattataacc gtgttgtcat
      181 cacgtcattt tcatgccgcg gtgctggttt ctatagtggt gacgtcttgc tgtggattat
      241 ttttcggtga tgttcatttt agcggcgtct attccattcc gcctgatatt agcggcgtca
      301 ttggtgaagt agatttgagc ggcgcgttaa cacttgaact cgccggtatc attttctcct
      361 ttatgctgat caacctattt gattcatcag gaacattaat tggtgtaact gataaagcgg
      421 gcttaataga tggtaacggt aaattcccca atatgaataa ggcgctgtat gttgatagcg
      481 tcagttcggt ggcgggtgcg tttatcggca cctcgtctgt tactgcctat attgaaagta
      541 cttctggtgt ggcagtcggt ggccgcacgg ggctgactgc ggttgtggtt ggcgttatgt
      601 tcctgttggt tatgttcttc tcaccgctgg tggcgatggt tcctccttac gcaaccgccg
      661 gagcgttaat ctttgttggc gtgctgatga cttcgagcct ggcgcacgtt aactgggatg
      721 attttaccga atcggtgcct gcgtttatta ccacggtgat gatgcccttt actttctcga
      781 tcaccgaagg gattgcactc ggctttatgt cgtactgcat catgaaagtg tgcaccgggc
      841 gctggcgcga tctgaacctg tgtgtggtgg tggtcgcagc tctgtttgca ctgaagatta
      901 ttctggtgga ttagtaactg gcgagggttt ccagatatca tgagttctga ttacgcagga
      961 gaactcatga tctggataat gctcgccacg ctggcggtag tgtttgtggt tggttttcgg
     1021 gtgctgacat ccggggccag aaaagcgatt cgccgtctca gtgatcggct gaatatcgat
     1081 gtcgtacccg tggagtcgat ggtcgatcaa atgggaaagt cagccggtga cgaattttta
     1141 cgttatttgc atcgcccgga tgagtcgcac ctgcaaaacg ccgcgcaggt gttgctcatc
     1201 tggcaaattg tcattgtcga tggtagcgaa cagaacctgc tgcaatggca tcggatttta
     1261 caaaaagccc gtcttgccgc gccgattacc gatgctcaag tcaggctggc gctgggtttt
     1321 ctgcgcgaaa ccgaacctga aatgcaggat attaatgctt ttcagatgcg ctataacgcg
     1381 ttctttcagc ctgccgaggg cgttcactgg ctgcattaaa accgcttcgt cttatcagcc
     1441 tacagaccgc gcctgacctg tcgggtggat aagacgttca cgccgcatcc ggtaatcttt
     1501 gccctgttcc gtttcgatct taactccagc tcaagcaaca ccgtaaaagt tgcaaaaacg
     1561 ttaaatgcgt cacacatttc aatgttaaag tggtcggctt ttcccctgaa acatgccacg
     1621 ggtaacacca tgagtgaatt tattgccgaa aaccgcggcg cggatgccat cacccgaccg
     1681 aactggtcag ccgttttctc ggtggcgttt tgtgtcgcct gtctgattat cgttgagttt
     1741 ttgcccgtca gtttgttgac gccaatggcc caggatttag gcatttcgga aggggttgcc
     1801 gggcaatcgg tgaccgtgac cgcctttgtg gcaatgtttg ccagtttgtt tattacccag
     1861 acaattcagg ctactgaccg ctgctacgtt gttattttgt ttgccgtttt gctgacgctc
     1921 tcctgcttgc tggtttcctt tgctaactca ttcagtttgc ttttaatcgg tcgtgcctgt
     1981 ctggggctgg cgctgggcgg gttctgggcg atgtcggcgt cgctgaccat gcgtctggtg
     2041 ccgccgcgta cggtgccgaa ggcgctgtcg gtgatcttcg gcgcggtttc tattgcgctg
     2101 gtgattgccg cgccgttggg cagtttttta ggcgagctta tcggttggcg caatgtcttt
     2161 aatgcggcgg cggtgatggg cgtgctgtgt attttctgga ttatcaaatc attgccttca
     2221 ctgccaggcg aaccctcgca tcagaaacaa aatactttcc gcttattaca acgtccgggt
     2281 gtgatggcag ggatgatcgc catcttcatg tctttcgccg ggcagtttgc tttcttcacg
     2341 tatattcgcc cggtgtatat gaacctggcg ggattcggcg tggatggctt aacgctggtg
     2401 ctgttgagtt ttggtatcgc cagctttatt ggtacgtcgc tttcgtcgtt cattcttaaa
     2461 cgttcggtaa aactggcctt agcaggcgcg ccgtgaatac tggctgtgag tgcgttggta
     2521 ctgacgttgt ggggaagcga taaaatcgtt gctaccggcg tggcgattat ctgggggcta
     2581 acttttgcat tggttcccgt cggctggtca acgtggatca cccgctcgct ggccgatcag
     2641 gcagaaaaag ccgggtctat tcaggtggcg gttattcagc ttgctaatac ctgtggcgcg
     2701 gcaatcggcg gttatgcgct ggataatatt ggtctgactt cgccgttgat gttgtccggc
     2761 acattgatgt tgctgactgc attgttggtt actgcaaagg tgaaaatgaa gaaatcctga
     2821 tatcaggtaa agaagcgttg gtcagtagtt gttgctgttc ttacatatcc gggcattcta
     2881 ccttacccaa cgcttcccaa taattgctct gattattacg ttccatcgcc acgatggcct
     2941 cgcgtatatg ttgtttattg ttttcatctg acaacattaa cttttcccac gcttcatctg
     3001 ataatgacgc ctgtggcgtg caaattttac gtaaatcttg taataccgtg gttttctctt
     3061 ttgcggactg cagtgagcta aaaggcgact cggcgtatac gatgcctggc atagcgaaaa
     3121 aagtgaaaat aagcagtagt gtcgttggtt tcatggattc aaccttttac aaatgtgtat
     3181 cgaatgaagc ataagtgtag tttgctttca tcgctctcat cattctgtac gaaacgcgct
     3241 tgcgtggtca gtaagaagtg ccagacttta tattccactt ttattccttt ttattcttat
     3301 cgatagcgtt tcgtttttta aaccgcagcg accttaccgc tatagtcagg taatcattaa
     3361 taaaaggata aaaaaatgaa actgacaaca catcatctac ggacaggggc cgcattattg
     3421 ctggccggaa ttctgctggc aggttgcgac cagagtagca gcgatgcaaa acacattaaa
     3481 gttggcgtta taaatggcgc agaacaagat gtcgcggaag tcgctaaaaa ggtggcaaaa
     3541 gagaaatatg gcctcgatgt tgaactggta ggatttagcg gttcgttgct accgaacgat
     3601 gcgacaaatc atggcgaact tgatgcgaat gtcttccagc atcgaccctt tcttgaacaa
     3661 gataatcagg cgcatggtta taaactggta gcggtgggaa atacgtttgt cttccctatg
     3721 gcgggttatt ccaaaaaaat cacaaccgtg gcgcaaataa aagaaggcgc gacagtggcg
     3781 atccccaacg acccgaccaa ccttggtcgc gcacttttac tgttgcaaaa agagaagcta
     3841 attactctga aagagggaaa agggttatta cataccgcgc tggatataac cgataatcct
     3901 cgtcatttgc agattatgga actcgagggg gcgcagcttc cgcgcgtact ggatgatccc
     3961 aaagttgatg tagcgattat cagcaccact tacattcagc agacagggct ttctccggtg
     4021 cacgacagcg tatttattga agataagaat tcgccgtatg tgaatatttt ggtggcacgg
     4081 gaagataata agaatgcaga aaacgtgaag gaatttctgc aatcttatca atcacccgaa
     4141 gtcgctaaag cggcagaaac catttttaac ggtggcgcgg tgcctggctg gtaattctca
     4201 ctcatgccgc gccggacgat ttatttttct ggccggcgac gggaatccat tgaaatcaaa
     4261 atcaccgatg acagaatcag cagcgttccc agccagtccg gtaatgtgaa cgtgatcccc
     4321 agcaacagca aagagagtag cgcgctactt aatggttctg cacagctcaa aatgctggct
     4381 tttggaccgc caattaattg tgctcctttc aggtacagac taaatgtcag ggacgtacca
     4441 atgaccacca aataaaaaaa cgccagaatc aaactgccgt taacgacaaa gtttgttcct
     4501 tgtctggcat aaaaaggcaa cagaatcaga ccgccaatca gcatactcca gccgacgact
     4561 ggtaacgtgc catagcgggc aattagcgtt gagggatagg tggtatagaa tgcagcagca
     4621 aatgccgagg caatgcccca gaacaacgcg gcaggagaga gcgataatga cgtcggatta
     4681 ccgtgtgtca ccaataaaaa agtcccgacc agcgatgtca aaatagcgca gaaaaccaga
     4741 atgcccgggc gcgatttacg caccagtgag aaccaggcga cgataatcgt cggtgagagg
     4801 aattgcagca ccgttgccgt ggctgcgttc gatttttcga tggttagcaa aaaagtgagc
     4861 tgtacagtta gcgcgccaac cacggaaaaa atcagcaggc taatggcatc tttatgattg
     4921 ttaataatag aaaagatttt atcgccatga acaaatgaca gcgtcagtag aatcaaaccg
     4981 gcgaatatca aacgcgtcat agtcaaaaac tgcgacgaca tctggctttg ctccatgatg
     5041 tattgcgcgc agacccctga acttccccac aacacggcgg caatcagaac gttcagcatc
     5101 ccctttctgg tggaacccat ttttccctct gcatactgtt ttgtcgttta tgtatgcagg
     5161 catgatagca aaaatggcga ggatggctct gtttgcgcca cgccgatttt tcttagccca
     5221 gactggtgag ctaaatatct ttaataaaca gcaggcaaat catcgcaata cccaacatcc
     5281 ctatcgccag ccagaacaac gcatggtagc tccagatttc aaccataatt ccgtcaacag
     5341 agccggcgat aatccagccg acgcgtgaag tatttgcata taacgttgtc gcagagccta
     5401 ttttttcagg cattaagtcc tgaaaataaa gcatgccga
//
LOCUS       DAJVUP010000216         5338 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.216, whole genome shotgun sequence.
ACCESSION   DAJVUP010000216 DAJVUP010000000
VERSION     DAJVUP010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5338
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.216"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(890..1831)
                     /gene="fabY"
                     /locus_tag="OQQ75_003937"
                     /gene_synonym="yiiD"
     CDS             complement(890..1831)
                     /gene="fabY"
                     /locus_tag="OQQ75_003937"
                     /gene_synonym="yiiD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid biosynthesis protein FabY"
                     /protein_id="HCS1978084.1"
                     /translation="MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAH
                     HQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGV
                     KRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQ
                     LQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWG
                     LIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQM
                     QVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE"
     gene            complement(1876..2313)
                     /gene="dtd"
                     /locus_tag="OQQ75_003938"
     CDS             complement(1876..2313)
                     /gene="dtd"
                     /locus_tag="OQQ75_003938"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000560980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HCS1978085.1"
                     /translation="MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANR
                     LCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRA
                     EALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV"
     gene            complement(2310..3183)
                     /locus_tag="OQQ75_003939"
                     /pseudo
     CDS             complement(2310..3183)
                     /locus_tag="OQQ75_003939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312836.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
     gene            complement(3177..3776)
                     /gene="yihX"
                     /locus_tag="OQQ75_003940"
     CDS             complement(3177..3776)
                     /gene="yihX"
                     /locus_tag="OQQ75_003940"
                     /EC_number="3.1.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphatase"
                     /protein_id="HCS1978086.1"
                     /translation="MLYIFDLGNVIVDIDFNRVLGAWSDLTRVPLATLKKSFHMGEAF
                     HQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHR
                     VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSD
                     TVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC"
     gene            complement(3917..4804)
                     /locus_tag="OQQ75_003941"
     CDS             complement(3917..4804)
                     /locus_tag="OQQ75_003941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HCS1978087.1"
                     /translation="MKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHD
                     GARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKP
                     PHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHS
                     YADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQAGPWD
                     DCFGFYNGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPEL
                     VTPDRPLVIETRWQFTPES"
     gene            complement(4794..>5338)
                     /locus_tag="OQQ75_003942"
     CDS             complement(4794..>5338)
                     /locus_tag="OQQ75_003942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1978088.1"
                     /translation="GIVYISSQLVLSRDIPLTGMLIASAIGIFSCPLVGWLSDRIGQK
                     SLYLSGAGFCVLFAFPFFLLLDSKSTLIIWCSMILGYNLGPTMMFAVQPTLFTRMFGT
                     KVRYTGLSFAYQFSAILGGLSPLIASSLLALGGGKPWYVALFLFAVSVLSFVCVWLIE
                     PTDEQETASYRYIREQSHEN"
BASE COUNT         1442 a         1345 c         1253 g         1298 t
ORIGIN      
        1 tgataaatga agaaaaaccg tattcatcgc cattaccacc accttaccta tattactcat
       61 taatgtatgt gcgaaaatta cgccggaaaa tcattaaaaa aaagcggatt tttgcatgtt
      121 gttttgtttt tgcgaggcgt tttccagaaa taataagagt gttgcagttg tttcatttat
      181 tactcaaaaa tggtttagtt atcgcccagg atgaattatg ggtgctatga atatattata
      241 ttcagagata tttatttgca taatctgaat ggtgtagccg aaaaacgtca gcatcctaac
      301 agcaccagga tttaaggtga aattaatctt tcatcacaga ccggtcagta ctgccaccaa
      361 ccggtcttta cttgctcatc gttataattt tgttggtaac agttcgggaa agttgttttt
      421 ctaaattaac aacagaataa ctttcttgtt taatgagatt aatattggca accattatag
      481 cctccttccc acggtttaag agcaaacata caacataatg attcataaca tacagagcag
      541 taaatgaatg atactgacaa tgatgccagc ccattatctt tgcataatgt ttgtgagcta
      601 tagattttaa aaatatttat gaggaaagta tggcaccaga ggaggttttg actatcaaaa
      661 atcgctcaaa cctgaactaa gatgatgagt taagcattat ctgcgataat tgccactcag
      721 ctctacaaat aatatttaaa tgctcctgaa cagtgatgta gcaagacacg tatggtgcca
      781 acgaagaata aaaatttata gagttcttat tcaatattac cggcatagac agggaatgat
      841 gtaaatgacc ggaatgaatg agagaggcag caccgcccct ctccataagc tactcttctt
      901 cgttcccgcc ctcttcatac gggccaaatg gcttcgcggg cagaacgata tacgtgcctt
      961 caaacactgc acccggcgtc tcgtcgccaa agatttcaac ttgcatctgc acccgtgctt
     1021 ttcgtccgcg cgccagacgg tcgagatcgc cgcttaaggc accaaggtcg gctaccgcat
     1081 gaggtttacc gctaatcggc ttgctgtagc ggatatgcgc atcggccaga ataatcgttc
     1141 cgccgaggtg gcgttcgcgc agcatcagcc agataagccc ccaaccggtg agcgttgcca
     1201 gcgagaataa actcccggca aacagcgtat ggtgcggatt ctgattaccg gtttccggca
     1261 tggtggtgat aaatttttgc ccggtatatt gctgaatgcg cacgcccatt ttttcactaa
     1321 gcgggatgtg ttcgtaccac gcctgttgca gctgcgcgca ccagtcgccg cgatgcaaaa
     1381 tatcatccag agtggcaaca ggtttaatca tcaaaaaatg gcgaatcggc gtggtggttg
     1441 gtgtggtgat ttctccctga ttaacaaacc ccagcttggc gaaaaactcc accgcgtctt
     1501 cacgggcgct acaggtcacg cgcttaacgc cttcctgacg cgccaccgac tccagggtca
     1561 tcgccatcaa cgtccccagc cctttgtcct gcacgtcggg atgaacggcc ataaagcgaa
     1621 tggacgcttc attgtcggca ttaatataca gtcggcctac cgccaccaga ttcccctgct
     1681 cgtcgacgac catctgatga tgcgccatcg catcccacgc gtcgcgttcc gaaccttttg
     1741 gttgatgcag gggcttacgc aacatttccc agcgaaactg atagtaacgc tctaactctt
     1801 cttctgtttg tggaacccga aggtgataca tagcgatact ctctcttgtt tcccgtgaca
     1861 accctggaag ctggctcata cctgcaacca gaatgtcacg gggccatcat tgaccagcga
     1921 tacctgcata tcggcagcga agcgtcctgt ttgcgtgttc atctcttgct ggcggcagcg
     1981 ttcgacgaaa tagtcatata acgcctctgc gcgatccggt gatgcgcctt tggagaaact
     2041 tgggcgcatc ccccgttcgg tatctgcggc gagggtaaac tgggaaacca ccagtacact
     2101 gccgcccgcc tgttgcacgt tgagattcat cttgccttcg gcatcgctaa agatgcggta
     2161 gccgagcaca cgctcgcaca gacggtttgc tttctgttcg tcgtcatcct tttcgacacc
     2221 caataacacc aaaagtcccg cgccaatttc gcccgtcact tctccctcca cggtgacgct
     2281 ggcacgggtt acgcgttgaa ttaatgcaat catggttcgt cgtcttcttc ttgttcagct
     2341 gcttgtttta gtttgcggta ttccccgaga gtgacagtaa tttccgcgcc aagcaagacg
     2401 atacaccatg tccagtagac ccaaacaaag agaatgggga tcaccgccag cacaccgtaa
     2461 atgagctgat atgacgggaa catggtgata taaagcgcga aacctttctt tcctgcttcg
     2521 aacaggagtg cggcgacaaa cgcgccgaca atcgcgtcgc ggttaggtac gcggatggta
     2581 ggaacaatgc tgtacagcaa ccagaaggag atccacgaca acagcaacgg aaaaatacgc
     2641 agcacgttgt cgatgacagt attgagatcg ctcgcccagc gcagggagag caaataggaa
     2701 ctgatcgcca gactggcccc tgccagcagc ggccccagcg ttaaaatcat ccagtacacg
     2761 gcgaacgagt aaatttttgg tcgcgctcgt ttactgcgcc agatggtatt caacgcgcta
     2821 tcgatggagt acatcaacaa taacgcggtg acgatcagcc cgcacgcccc aacggcggtc
     2881 atcttgttgg aattggcaac aaattgttcg atataccgct gaataacatc gccagtagca
     2941 ggcagaaagt tggcaaaaat aaagtgacgt aactgaatgc tgacgtcgga aaacatggga
     3001 aaagcggcga aaagcgcaaa aacaacggca accagcggca ctaatgagag caacgaccac
     3061 ataggcaagg ttacctgcca gggttgtcat gttgtcctca tcaatacgtt gccagagtag
     3121 ttttagccag gcccatagtg gacgggtacg gtgcctggct ttgtcctgaa tggtttttag
     3181 cataacacct tcgcgaaata gtccgggatg gtggttttat ctttcaccag aatactggta
     3241 atgcccagct gattggctcc ttctatatta tcggcgttat cgtcgaaaaa gaccgtatcg
     3301 ctgggtgaaa aaccttccgc ctgcaaaaca tgctggtaaa ttcgtgcttc aggtttgcgc
     3361 atccccagat cttgcgacag atagatatgg tcagcagcat cacgaatttc cgggtattct
     3421 tccggccaga aggtggtatg caggcggttg gtattggaaa gcaccaccac gcgatgcccc
     3481 tgctcacgca gtttatgcat gatggcgatc acttccgggc gcagcgcaac aaacaccgcc
     3541 tgccagccgt gagagaactg ctcgtagctt agcggtagag ccatctcatg acacagcgcc
     3601 tctgcgaacg cttcgtcgct aatttcccca cgctcatgct gatgaaacgc ctcccccata
     3661 tgaaaactct tcttaagcgt agccagtgga acacgcgtta aatcgctcca ggctcccagc
     3721 acacggttaa agtcgatatc gacaatcaca ttacctaaat caaagatata gagcattttt
     3781 gcctcctttc gcgccacaag aaattaactg tagcgggaaa ggatgggttt ggctatgtgg
     3841 caataagggt aatcttgtga tgctgattgc gaaaaagcag agtaatttca ctggcttttt
     3901 cgcaatagat gaatggttaa gattcaggtg taaattgcca acgagtttcg atgaccagcg
     3961 gcctatctgg tgtcaccaat tccggcgtta gatttattgc gttaggtgcc tgagtcagcg
     4021 ggttaataca ggtggcatcg ggctgtttat caaataccac cagactgttt gcagaagaga
     4081 tcatggtcat cgcgagttta ccaggccaca gtaacttaac cttcaccccg ttataaaaac
     4141 caaaacagtc atcccaggga ccggcttgag gagagatacg atttccagtt ggcagttcat
     4201 cactacccgc ttcttcttgc cagtccgcat caaaaagcac ctgcaacgat tctgtatttt
     4261 gcggagtcag ctttttcgca aaccacggat gccagccagc ggaggccggg aatgtatcgg
     4321 catatgaatg gacttccagt tgcaaaacca gcgcatcgtt ctccagcaaa aaagtctgaa
     4381 tcacttcccc ttgccagggc cacggtgaag ccaggggcat acgtaaagtc agggaatctg
     4441 ctgttttgtc gatgatttcc cacgttgagt aacaagccat accatgcaac gcatgtggtg
     4501 gtttattggc gggtaaagaa taacattgcc caccagcatt cagcgtcgca ttccccagtc
     4561 gccctgccca cggcaccatt gggaaacagc catactgaaa agctctgcgc tgcggctgcc
     4621 attggcgtaa tacttcagaa ccaaatgcct ttaacgaggt tatcctggca ccatcatgcg
     4681 gataaatctg caggtgaata ttgccttttt ccagcgtcac taactctcct acaggcccag
     4741 gccatggcgc gtcaaacgcc tgttgtagcg ccaggtaatg ctcgtttttt cgttcagttt
     4801 tcatgagatt gttccctgat gtagcggtaa gaagcggttt cttgttcatc ggtcggctca
     4861 atcagccaga cgcaaacaaa ggaaagaact gagacagcaa ataaaaacag agcgacatac
     4921 cacggttttc ctccccctag cgccagcaaa cttgaggcga taagggggct tagtccgcca
     4981 agaatcgcgg aaaattgata agcaaaagaa aggccggtat atcgtacttt ggtaccgaac
     5041 atgcgggtga aaagtgttgg ctgcacggca aacatcatcg tcggacctaa gttgtagccg
     5101 aggatcatac tgcaccagat gatgagcgta cttttgctat ccagtaataa gaagaaagga
     5161 aacgcgaaca ggacacaaaa tcctgctccc gacaaataca gacttttttg acctatacga
     5221 tctgataacc atccaaccaa tggacaactg aaaataccga tcgccgaggc aatcaacata
     5281 cccgtcaggg gaatatctcg cgacaatact aattggctgg aaatatagac aataccaa
//
LOCUS       DAJVUP010000217         5314 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.217, whole genome shotgun sequence.
ACCESSION   DAJVUP010000217 DAJVUP010000000
VERSION     DAJVUP010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5314
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.217"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(137..2056)
                     /gene="dhaR"
                     /locus_tag="OQQ75_003943"
     CDS             complement(137..2056)
                     /gene="dhaR"
                     /locus_tag="OQQ75_003943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415719.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase operon
                     transcriptional regulator DhaR"
                     /protein_id="HCS1978089.1"
                     /translation="MSGAFNNDGRGISPLIATSWERCNKLMKRETWSVPHQAQGVTFA
                     SIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGF
                     HDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQALWNWAFCATPLFDSKGRLTGT
                     IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVIS
                     WDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE
                     SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQT
                     RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL
                     AEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA
                     RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN
                     KLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE
                     HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRK
                     MKQHGIDAGQFKRRV"
     gene            2284..3393
                     /gene="dhaK"
                     /locus_tag="OQQ75_003944"
     CDS             2284..3393
                     /gene="dhaK"
                     /locus_tag="OQQ75_003944"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HCS1978090.1"
                     /translation="MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAG
                     KVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLI
                     IKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLV
                     GAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIH
                     GEPGIDRRSFSSLDQTVDEMFDTLLGNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGD
                     RVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLK
                     VDDETLALWDAPVHTPALNWDKLGESNVTEQNSNC"
     gene            3365..3997
                     /gene="dhaL"
                     /locus_tag="OQQ75_003945"
     CDS             3365..3997
                     /gene="dhaL"
                     /locus_tag="OQQ75_003945"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HCS1978091.1"
                     /translation="MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNR
                     GFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLT
                     LEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASS
                     IAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE"
     gene            4008..>5314
                     /gene="dhaM"
                     /locus_tag="OQQ75_003946"
     CDS             4008..>5314
                     /gene="dhaM"
                     /locus_tag="OQQ75_003946"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaM"
                     /protein_id="HCS1978092.1"
                     /translation="MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNP
                     IGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPKIAAKVRLCAAPLVE
                     GTLAATVSAASGADIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAV
                     VIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLI
                     AKGPEAEEALIAFRQLAEDNFGETEEVAPPTLRPVPPVSGKAFYYQPVLYTVQAKSTL
                     TVEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDYIAAIFSGHHTLLDDPELLAAASEL
                     LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQ
                     FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSPSALIAR"
BASE COUNT         1331 a         1366 c         1333 g         1284 t
ORIGIN      
        1 gaagcaagtc aacggaggat atcgcttcag cttttaagtg cgtgatagac aagcccttaa
       61 acgatgctga aaaatgttag cgtgcgccgg aatgaaatat agatcactct gatgtattag
      121 aaatcgtttc tgtctttcat acccggcgct taaactgccc tgcatcaatg ccatgttgct
      181 tcattttccg ccacagcgta gtgcggccga ttccaagtaa agccgacatt tcctgaatgc
      241 gaccgcctgt gacctgggct gcgttaataa ttgcctcttt ttcaacttcc gcaaatgaca
      301 gactggtgga aaggcgggtg gcgctgacat catctgttgc ctgctcggta aacagatgtt
      361 ccggcaaatc actgacgcga atgcgcccat tatcactact cagagcaaga ttctcgatga
      421 cgctgtaaag ttcaaaatcg ttgcctggcc atgcacaaga aaccaggcga gcgagggcat
      481 cgtcatcaat tttcagccgc gtagagaagc gtttttcaag actgcgtaat ttgttattca
      541 ccagcgccgg aatgctgcca cgccgcatac gcagaggcgg gatggtaatt tcaaatgcat
      601 gcagcgcgta atacagctgg cgactaaaac gattttgttc caccagcatt gcgaggtccg
      661 cggtcgttgt tgcaatcact ttgacatcaa ttggtattaa acgccgcgca tccagtcgcg
      721 tgataacacc ctgcttgata acctgaagca aagcagactg taactccacc gccagatatt
      781 caatcttttc aagaaacagc gtgccgccgt gcgccagttc cagccgactc agacggccat
      841 tttcattgtc cgtacgatcg ccaccaataa attcttccgc cagtgccgca tcaccatata
      901 actcacaatt gacggcgata taaggacctg cagcacgctc gctttcatta tgaattgcct
      961 gacttagcag tgccttgccc acgccctctt ctccacaaag caggacagga aagctactgc
     1021 gcgccgcctg gcgaccaaaa tgaatcaagc ggcgggtttg cggatcgtcc tgtggcatat
     1081 gagcaaaggt atggctgact tttcctaatt gactggtcat caactgccgc atctgttcca
     1141 caggatggag caacaaaata aagctggttc cctgcgtttc tattatcggt ttaagggtta
     1201 tcaccgcatc aataaactga tgctgacttt caaaggttgc ttctacgtgt ttgagcggat
     1261 gtgcctgttt tattgcttgt tgcaatacgg cgggtaacgt taagagttca gtgattgccc
     1321 gtccctgact tgccgtcgcg tcaaggcgca agacccgcgc cgcctgggca ttgataaatt
     1381 gcaaattacc ctgctcgtcc cagctaatca cgccatcatc catactttct aacagggcat
     1441 taagttgatt taaatgacgg ttagtttcag cgagcaaact gtccgtcagc agtaaatttc
     1501 cgacctcgcg ggcgattgcc aacgtcaacg gcaaatcagc tgcggtagtt tgctcaaccg
     1561 gacacgccag cgctattgtt cccgtcaatc ggcccttgct gtcaaacaac ggcgttgcac
     1621 aaaaggccca gttccagagt gcctgtttga aatgttgatc ggccatcgtt ttcacggcct
     1681 gaccagagat agccgctaac gatagcgcac aagtaccaat aattccctcg gcgcaatacg
     1741 tgccgtcatg gaatccaagt gcacttagct gctgcaaggt ttgcggatcg ccattacggc
     1801 tgagaatgca ggcggtttca tcgaggataa acagcgcaca ctctcgcggt gccatatatt
     1861 cccaggcatc ttccagcgca gcctgcccga gcgtcagcat cgctttctta cgccgataaa
     1921 tagaagcaaa tgtcacgccc tgggcctgat gtggtacgct ccatgtctcc cgtttcatca
     1981 gcttattgca tcgctcccag gaggttgcaa ttaagggaga tatgccccga ccatcgttgt
     2041 taaaagcgcc actcatatcc cgcatccctt atgacaaaag gtgttccggc tcgcaatttt
     2101 aagtattagt acacgtaaaa gtttcaatat ggaacattca ttaaagcata tgtttcacta
     2161 tgaaacataa tttgggctaa ttttcttttc ccttgcctga tgcacaatgg attcatcggc
     2221 agtcagtggt cgccgtgtcg ttgaacatca tccatgccct accgtaattg ctggagcaaa
     2281 ataatgaaaa aattgatcaa tgatgtgcaa gacgtactgg acgaacaact ggcaggactg
     2341 gcgaaagcgc atccatcgct gacattgcat caggatccgg tgtatgtcac ccgagctgat
     2401 gcccctgttg caggaaaagt cgccctgctg tcgggtggcg gcagcggaca cgagccgatg
     2461 cactgtgggt atatcggtca ggggatgctt tcgggggcct gtccgggcga aattttcacc
     2521 tcaccgacgc ccgataaaat ctttgaatgc gccatgcaag ttgatggcgg cgaaggtgta
     2581 ctgttgatta tcaaaaatta caccggcgat attcttaact ttgaaacagc gaccgagtta
     2641 ctgcacgata gcggcgtaaa agtgaccact gtggtcattg atgacgacgt tgcggtaaaa
     2701 gacagtcttt atactgccgg gcgacgcggc gttgccaaca ccgtattaat tgaaaaactc
     2761 gtaggcgcag cggcggagcg tggcgactca ctggacgcct gtgcggaact ggggcgtaag
     2821 ttgaataatc aaggccactc aataggtatc gctctcggtg cctgtaccgt tcctgccgcg
     2881 ggcaaacctt cttttaccct ggcggataat gagatggagt ttggcgtcgg cattcatggt
     2941 gagccgggta ttgaccgccg ctccttctct tcccttgatc aaaccgtcga tgaaatgttc
     3001 gacaccctgc tgggaaatgg ctcataccat cgcactttac gtttctggga ttatcaacaa
     3061 ggcagttggc aggaagaaca acaaaccaaa caaccgctcc agtctggcga tcgggtgatt
     3121 gcgctggtta acaatcttgg cgcaactccg ctttctgagc tgtacggcgt ctataaccgc
     3181 ctgaccacac gttgccagca agcgggattg actatcgaac gtaatttaat tggcgcgtac
     3241 tgtacctcac tggatatgac cggtttctca atcaccttac tgaaagttga tgacgaaacg
     3301 ctggcactct gggacgcccc ggtccacacc ccggccctta actgggataa attaggagaa
     3361 agcaatgtca ctgagcagaa ctcaaattgt taactggctc actcgttgtg gcgatatttt
     3421 cagcaccgag agcgagtatc ttaccggact ggatcgcgaa attggcgacg ctgaccacgg
     3481 gctaaatatg aaccgaggct ttagcaaagt ggtggaaaaa ctccctgcta tcgcagataa
     3541 agatatcggt ttcattctca agaataccgg tatgacgctg ctttccagcg tcggtggtgc
     3601 cagtggtccg ctgttcggta ccttctttat ccgcgccgca caggcgaccc aggcacggca
     3661 aagcctgaca ctggaagagc tttatcagat gttccgcgat ggcgcggacg gcgtaatcag
     3721 tcgcgggaaa gccgaacctg gcgataaaac catgtgtgat gtgtgggtgc cggtggtgga
     3781 atcgttacgt cagtccagcg agcaaaatct ctctgttccg gtggcgctcg aagctgccag
     3841 tagcatcgcc gaatccgctg cacaaagtac gattacgatg caagcccgca aaggccgcgc
     3901 cagttatctc ggtgaacgca gtattggtca ccaggatccc ggcgcgacct cggtgatgtt
     3961 tatgatgcaa atgttggcgt tagccgcaaa agagtaagga attggtgatg gtaaacctgg
     4021 tcatagtttc acatagcagc cgactgggag aaggtgtcgg tgaattagcc cgtcagatgt
     4081 taatgagtga tagttgtaaa atcgccattg ccgcgggaat tgacgatcca caaaatccta
     4141 ttggtaccga tgccgtcaaa gtgatggagg ccatcgaatc tgttgctgat gccgaccatg
     4201 tgctggtcat gatggatatg ggtagcgcat tattgagtgc tgaaactgcg ctggaattgc
     4261 tggctcccaa gatcgccgca aaagtacgtt tgtgtgctgc gccgttggtc gaaggtacac
     4321 tggcagcaac ggtcagcgcg gcctcgggag cggatatcga caaagttatc tttgacgcta
     4381 tgcatgcgct ggaagccaaa cgtgaacaac tgggtttacc gtcctccgac actgaaatct
     4441 ctgacacatg tcctgcgtac gatgaagaag cccgttctct ggcggtggtc ataaaaaacc
     4501 gtaacggcct gcatgtacgt ccggcctccc ggctggttta taccttatcg acatttaatg
     4561 ccgatatgtt gctggaaaaa aacggcaaat gcgtcacacc agagagtatt aaccagattg
     4621 cgttactaca agttcgctat aacgatacgc tgcgcctgat tgcgaaaggg ccagaagctg
     4681 aagaggcact gatcgctttc cgtcagctgg ctgaagataa ctttggtgaa acggaggaag
     4741 tcgctccacc tactctgcgt cccgttccgc ctgtttcggg taaagccttt tattatcaac
     4801 cagttttata tacggtacag gcaaaatcaa ccctgaccgt ggaagaagaa caagatcgat
     4861 tacgccaggc tattgacttc acgttattag atctgatgac gttaacagcg aaagcagaag
     4921 ccagcgggct tgactatatt gccgcaatct tttctggtca ccatacactg ttagatgatc
     4981 cggaactgct ggcggcggca agcgaactcc ttcagcatga acattgcacg gcagaatatg
     5041 cctggcagca agttcttaaa gaacttagcc agcaatacca gcaactggat gatgaatatc
     5101 tacaagctcg ctatattgat gtggacgatc ttctgcatcg caccctggtc cacctgaccc
     5161 aaacgaaaga agaactcccg cagtttaact cgccaactat tctactggcg gagaacattt
     5221 atccttccac agtactgcaa ctggatccgg cggttgtaaa aggtatctgc cttagcgccg
     5281 gaagtccggt atcccccagc gccctaatcg cccg
//
LOCUS       DAJVUP010000218         5208 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.218, whole genome shotgun sequence.
ACCESSION   DAJVUP010000218 DAJVUP010000000
VERSION     DAJVUP010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5208
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.218"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..117
                     /locus_tag="OQQ75_003947"
     CDS             <1..117
                     /locus_tag="OQQ75_003947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3829 domain-containing protein"
                     /protein_id="HCS1978093.1"
                     /translation="DWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR"
     gene            complement(167..1915)
                     /locus_tag="OQQ75_003948"
     CDS             complement(167..1915)
                     /locus_tag="OQQ75_003948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative frv operon regulatory protein"
                     /protein_id="HCS1978094.1"
                     /translation="MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFT
                     LNGKARISASGSAGYQLEIFERRSFFQLLQKHDNDYRLLALLLLNTFTPRAQLASALN
                     LPETWVAERLPRLKQRYERACCLASRPGLGHFIDETEEKRVILLANLLRKDPFLIPLA
                     GVTRDNLQHLSTACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIV
                     EQSGMFLGDNAVRTLTGLIEKQHQQAQVISADHVLGLLQRVPDIASLNIIDTQLVENI
                     TGHLLRCLAAPVWIAEHRQSSMNNLKAAWPAAFDMSLHFITLLREQLDIPLFDNDLIG
                     LYFACALERHQNERQPIILLSDQNAIATINQLAIERDVLNCRVIIARSLSELVAIREE
                     IEPLLIINNSHYLLEDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGS
                     FHYSNVRGESWQHITRQICAQLVAQHHITADEAQRIIAREGEGENLIVNRLAIPHCWS
                     EQERRFRGFFITLAQPVEVNNEVINHVLIACAAADARHELKIFSYLASILCQHPAEVI
                     AGLTGYEAFMELLHKG"
     gene            complement(1915..2985)
                     /locus_tag="OQQ75_003949"
     CDS             complement(1915..2985)
                     /locus_tag="OQQ75_003949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709702.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1978095.1"
                     /translation="MNIELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLGS
                     FVARKGNKGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHK
                     GVKIPGVIGSVAPHALTEKQRQRPLSFDEMFIDIGANSRDEVEKRGVAMGDFISPEAN
                     FACWGEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEH
                     IKPDVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH
                     NDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLI
                     RDFLTTLTAEKVNAFSQFRQMD"
     gene            complement(2975..4426)
                     /locus_tag="OQQ75_003950"
     CDS             complement(2975..4426)
                     /locus_tag="OQQ75_003950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIBC"
                     /protein_id="HCS1978096.1"
                     /translation="MESSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQG
                     SSGVENRLSSEEIAAADYVILATGRGLSGDDRARFTGKKVYEIAISQALKNIDQIFSE
                     LPTNSQLFAADSGVKLGKQEMQSGSVMSHLMAGISAALPFVIGGGILVALANMLVQFG
                     LPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLAND
                     KALLGTQSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVL
                     TYYVIGPVMSDLMGGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSL
                     LEKHIYDWYAIVGVVALMPPVAAGLATFIAPKLFTRQEKEAASSAIVVGATVATEPAI
                     PYALAAPLPMITANTLAGGITGVLVIAFGIKRLAPGLGIFDPLIGLMSPVGSFYLVLA
                     IGLALNISFIIVLKGLWLRRKAKAAQQELVHEH"
     gene            complement(4437..4883)
                     /locus_tag="OQQ75_003951"
     CDS             complement(4437..4883)
                     /locus_tag="OQQ75_003951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HCS1978097.1"
                     /translation="MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQT
                     LLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGV
                     PQSGEEDQVKIIGTLCRKIIHKEFIHQLQQGDTDQVLALLNQTLSS"
BASE COUNT         1318 a         1341 c         1316 g         1233 t
ORIGIN      
        1 gactgggata aagagcaact tcaggacgca aactcaagct ggatggtcga agactctttc
       61 ccgagagcat tacgcgagta caacgaaatg gttgatgact ataatagcct gcgttaaacg
      121 tttttgatga taaatgcagt gtcggatgcg gcgcatctga cacagttcac cccttgtgaa
      181 gtaactccat aaatgcctca tatcctgtta acccggcaat aacctctgcc ggatgctgac
      241 acaatatgct tgccagatag ctaaatattt ttagctcatg acgcgcatcg gcggcggcgc
      301 aggcgatcaa gacatggtta atgacttcgt tattcacctc aactggttgg gcgagggtaa
      361 taaaaaatcc acgaaaacgt cgctcctgtt cgctccagca atgtgggatg gcgaggcgat
      421 taacaatcag gttttcacct tcgccttcgc gggcgatgat gcgttgtgct tcatcggcgg
      481 taatatggtg ttgtgcgact aattgcgcac aaatttgccg ggtaatatgt tgccagcttt
      541 caccgcgtac attcgaataa tgaaaacttc cgggggcaga gaaaaaacgc tccggttgct
      601 ggcgaataaa tgccgtcgcc agaaaatgtt ttatttgttc gataccggca gccgtaatga
      661 tattttttac ggtgatgtaa ttatttaccg cgtcttccag taaataatgg ctattgttaa
      721 tgatcaataa cggctcaatc tcttcgcgaa tggcaacaag ttcgcttaag ctacgggcaa
      781 taattacccg acaatttaaa acatcgcgct caatggcgag ctgattaata gtggcaatcg
      841 cgttctggtc cgagagcaaa atgatcggct ggcgttcgtt ttgatgccgc tccagcgcac
      901 aggcaaaata caaaccgatc agatcgttgt cgaaaagggg aatatcgagc tgttcacgca
      961 gtagcgtaat aaagtgcaga ctcatatcaa aggccgcagg ccaggctgct ttcaggttat
     1021 tcatgctact ttggcggtgc tcagcaatcc acaccggtgc ggcaaggcaa cgtaataaat
     1081 gcccggtaat attctcaacc aactgcgtat caataatatt caatgacgcg atgtctggca
     1141 ccctttgcag caaccccagc acatgatcgg ctgaaattac ctgcgcttgc tgatgctgtt
     1201 tctctatcaa acctgtcagg gttcttacag cgttatcacc aagaaacatg ccgctttgtt
     1261 caacgatttg ttttatctcg tcaccgggat attgcggcca ctcatcggtc agttgattac
     1321 gcagggcgta aatcgccaga atcaggctgg agagataatc accctgcatg agcggccagc
     1381 ggtgttggtt gtcgcaggcc gtggataaat gctgaaggtt gtctcgtgtt acgcccgcca
     1441 gcggaattaa aaacggatct ttgcgcagca agttcgccag caagataacg cgcttctctt
     1501 ctgtctcatc aatgaaatgg cccaaaccgg ggcggctggc caggcaacaa gcgcgttcat
     1561 aacgctgttt taaccggggc agacgctctg cgacccacgt ttctggcaaa ttaagcgccg
     1621 aggcgagttg cgcacgggga gtaaaggtat tcagtaataa cagtgccagc agccgatagt
     1681 cgttatcgtg cttttgcagc aactgaaaaa agctgcggcg ctcgaagatt tccagctgat
     1741 agcccgcact accactggcg gaaatgcggg ctttgccgtt aagggtaaag ttgagatagt
     1801 caatatcacg caggatggtc ctgcctgaaa cgccagtctg ttgcgccagc tcaccaggcg
     1861 tgcgcggctg ttgctccagc agatcgacaa tctttaactg gcgttcgttt agcattaatc
     1921 catctgacgg aactggctaa acgcgttgac tttctccgcg gttaaggtgg tcagaaaatc
     1981 ccgtatcaac gtgagcagag catcgtaatc ggcttttgaa atcataccgc tgttagcgtg
     2041 cagatagcgg gttggcaggc acagcgcaac aaccggacgc ccgccgccca tcacgttgta
     2101 gcgcccgcca tccgtcgcac cggttttcat ggtggaaaat tgcagcggta aatcgttatg
     2161 tgcggcacag ctttttaacg ctgctaccag tttctggttg gggaagtagc gcttgtcaaa
     2221 cagcatcagc cccggcccct ggcccagttt cagcgggtat ttaatgttat caatgcccgg
     2281 aacatcgcct gcgacagcgg tatccagcac gatcactaca tccggtttaa tgtgttccgc
     2341 cgaggtttgt gccccgcgta gcccaacttc ttcttccacg ctgccgacgc catacagcgt
     2401 aatttcggga ttattcaccg tctgcaatag ttcagccatc attgcgcagc cgatgcggtt
     2461 atccagcgcc ttgccgacca ctttatcttc gccccagcag gcaaaattgg cttccgggct
     2521 aataaaatcg cccatcgcca caccgcgttt ttccacctca tcgcgactgt ttgcgccaat
     2581 atcaatgaac atctcatcaa atgacagcgg ccgttgcctt tgcttttccg ttaacgcatg
     2641 aggcgcgacg gaaccaatca caccagggat tttcactccc ttgtgtgtgc gtatggttac
     2701 ccggtggttg agcatcgact gattccacca gccaccaatg gtggtgaaac gcagaaaacc
     2761 gctctcgtcg atgtgggtga ccataaagcc gacttcatcc atatgcccga caacggcaac
     2821 ttttggacct ttattcccct tacgggcaac aaagctgccc agaccatcaa aggtgatctc
     2881 attaacgcaa ggttccagcg tgtttatcag aatgtcgcga acttcctgtt catcgccgct
     2941 gacggcgctg gcttcgcaca actgttgcag taactcaatg ttcatggaca agctcctgtt
     3001 gcgcggcttt cgctttgcgg cgtaaccaca atcctttcag gacgataatg aatgaaatgt
     3061 tcagcgcgag gccaatcgcc agcaccagat aaaacgaacc caccggcgac atcaggccga
     3121 tcagcgggtc aaagataccc aaaccaggtg ccagacgttt gattccgaaa gcgatcacca
     3181 gcacgccggt aatgccaccc gccagcgtat tggcggtaat catcggcaac ggagctgcca
     3241 gagcgtaagg tatagccggt tcggttgcga ctgtggcacc gaccacaatg gcactactgg
     3301 cagcctcttt ttcctgtcgg gtaaacagtt tgggcgcaat gaacgtcgca agacccgccg
     3361 caacgggcgg catcaacgcg acaacgccga cgatggcgta ccagtcataa atgtgttttt
     3421 ccagcagtga gaagcagaag aaccaggcgg ttttattgat ggggccgccc atatcgaacg
     3481 ccagcatcgc accgaccaga aacgctgctg caaacttcat tgatggagga atggtattca
     3541 ggaagtggag cagcccgccc atgaggtcgg acatcaccgg cccgataacg tagtaagtga
     3601 gcacgccgaa aaccagcaga gtaacgaacg ggatcagcat tgaaccgagc agcggttgta
     3661 atgctttgcc aaggcgcact ttgcggaacc agaagacgaa atagccaatc gccagcccca
     3721 gcaccaccgc gccgaggaat cccgcacccg actgggtgcc gagcagcgct ttgtcgttcg
     3781 ccagatagca aaccagaaac gccggagcga aagccggttt atcggcaatc gacgaggcaa
     3841 tataagcgcc catgatgggg atcataaagg tgaagccaag gtaaccgatg gattcaacta
     3901 cccaggtaaa cgacggcgcg cctttcgaca tatcggtata cggcaaaccg aactgcacca
     3961 gcatgttggc aagcgccacc aggataccac cgccgatgac aaacggcagc gccgcagaga
     4021 tgcccgccat caggtggctc atcacgctgc cgctttgcat ttcctgtttg ccaagcttca
     4081 cgccactatc tgcggcaaaa agctgcgagt ttgtcggtaa ttcgctgaaa atctggtcga
     4141 tatttttcaa cgcctgggag atggcaatct cataaacttt cttcccggta aaccgcgcgc
     4201 gatcatcacc gctcaggcca cgcccggtag cgagaatgac gtaatcggca gcggcaatct
     4261 cttcgctgga taagcggttt tcaacgccac tggacccttg agtttccact tttatggtat
     4321 ggccgagaga acgggctttc tgttccaggg cttccgccac catgtaggtg tgagcgatcc
     4381 cggcggggca gttggtgatc gcgacaatac gtaaggatga ctccatcgcc acttccttat
     4441 gagctgaggg tttgatttaa caaggcaagc acttggtcgg tatcgccctg ttgcagttga
     4501 tgaataaatt ccttgtgaat aattttgcga cacagtgtgc cgatgatttt gacctgatcc
     4561 tcttcgccgc tttgcggcac gccgaggcag atccagcaat tgacgtcttc gccatcgctg
     4621 gctttccagt caatagcctg cgctttgcgg gcgaataata cgaacggttg tttaacgcag
     4681 gcgcttttac cgtgcggcac ggcgacaccg gaaccaaatc cagtagagtg cattttttcg
     4741 cgcagcagca gggtttgcag gaactggtgt gagtcggtga taaaaccgtt ttgtaacgct
     4801 attgtcgcca actgcttcag aacggaataa gcgccattgc cctgaatatt caggtcaata
     4861 cagcttgcag taagagctgc cattaatcgg actccataaa atatatttta atcaattgta
     4921 atggtggagc gattaagtga tgagaggcga tatgtcggta aacaatgaca atttgagaca
     4981 gagtgaaagg tcagatttgc ggagtaatgc acataatggt tatttaaata aaccacatga
     5041 atcattaatg ggttattcat tatttttgtg atttactcac aatgtatcag ggaaatataa
     5101 cttaccggga gatgtaatat gtttaatttt tcaaatcgaa atttaaaata ttgtgccgga
     5161 ggcatctccg gcacattggg caattacggc aggtaaaaca cttcttgc
//
LOCUS       DAJVUP010000219         4985 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.219, whole genome shotgun sequence.
ACCESSION   DAJVUP010000219 DAJVUP010000000
VERSION     DAJVUP010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4985
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.219"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(28..351)
                     /gene="soxS"
                     /locus_tag="OQQ75_003952"
     CDS             complement(28..351)
                     /gene="soxS"
                     /locus_tag="OQQ75_003952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide response transcriptional regulator
                     SoxS"
                     /protein_id="HCS1978098.1"
                     /translation="MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRT
                     VTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSD
                     YRHRL"
     gene            437..901
                     /gene="soxR"
                     /locus_tag="OQQ75_003953"
     CDS             437..901
                     /gene="soxR"
                     /locus_tag="OQQ75_003953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HCS1978099.1"
                     /translation="MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG
                     NQRRYRRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREEL
                     DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN"
     gene            1447..2796
                     /gene="ghxP"
                     /locus_tag="OQQ75_003954"
                     /gene_synonym="yjcD"
     CDS             1447..2796
                     /gene="ghxP"
                     /locus_tag="OQQ75_003954"
                     /gene_synonym="yjcD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanine/hypoxanthine transporter GhxP"
                     /protein_id="HCS1978100.1"
                     /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI
                     VVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG
                     QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANG
                     VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGL
                     IFDPNVHFSGVFGMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI
                     RAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTG
                     LTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL
                     VTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI"
     gene            2948..4597
                     /locus_tag="OQQ75_003955"
     CDS             2948..4597
                     /locus_tag="OQQ75_003955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HCS1978101.1"
                     /translation="MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWP
                     TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGF
                     LIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL
                     VSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP
                     ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA
                     MLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGW
                     LWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFP
                     ARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAI
                     QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAA
                     LRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ"
     gene            complement(4751..>4985)
                     /locus_tag="OQQ75_003956"
     CDS             complement(4751..>4985)
                     /locus_tag="OQQ75_003956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HCS1978102.1"
                     /translation="MFNTRLYRVNFDEASVQGMGISILRGEENIPIDSDTLVTLQKFF
                     EEDCTSHTGMSQTEDNINAVAMKITADIMQHAD"
BASE COUNT         1031 a         1200 c         1400 g         1354 t
ORIGIN      
        1 gcgggagtta acgcgcgggc aataaaacta caggcggtgg cgataatcgc tgggagtgcg
       61 atcaaactgc cgacggaaaa cgcgggagaa ggtctgctgc gagacataac ccaggtccat
      121 tgcgatatca aaaatcggac gctcggtggt gcgcaactca acggcggcca gtaacaggcg
      181 acgttggcga atgtaatcgc caagcgtctg atgcgtcacc gtgcggaaca ttcgttgcaa
      241 gtaccacttt gaatagcctg atttttttgc gactacatca atgttaagcg gctggtcaat
      301 atgctcgtca atccatgcga taagatcctg aataattttc tgatgggaca taaatctgcc
      361 tcttttcagt gttcagttcg ttaattcatc tgttggggag tataattcct caagttaact
      421 tgaggtaaag cgatttatgg aaaagaaatt accccgcatt aaagcgctgc taacccccgg
      481 cgaagtggcg aaacgcagcg gtgtggcggt atcggcgctg catttctatg aaagtaaagg
      541 gttgattacc agtatccgta acagcggcaa tcagcggcga tatagacgtg atgtgttgcg
      601 atatgttgca attatcaaaa ttgctcagcg tattggcatt ccgctggcga ccattggtga
      661 agcgtttggc gtgttgccag aagggcatac gttaagtgcg aaagagtgga aacagctttc
      721 gtcccaatgg cgagaagagt tggatcggcg cattcatacc ttagtggcgc tgcgtgacga
      781 actggacgga tgtattggtt gtggctgcct ttcgcgcagt gattgcccgt tgcgtaaccc
      841 gggcgaccgc ttaggagaag aaggtaccgg cgcacgcttg ctggaagatg aacaaaacta
      901 aagcgccaca agggcgcttt agtttgtttt ccggtctttg tctttctctc tatcccgctg
      961 gtacacagga gggtttcccc cgacgtcaac acacctcatt cgagcacgtg gtggaggttc
     1021 cggttggtgt tgatgcttta attgtatgtc accgacgttt cttcgccagt gtaaaagtat
     1081 actttttaac cgcaatattt ttgtcatctc agacgatttt ttatcgcaat cctgaacggt
     1141 atacggctcg ataacgctgc aatcttgcgc accgacgata acgtttgcgc atcaattgcc
     1201 tgttttttca tcgtcaagac aataaaagag aaaaaagcag caaacttcgg ttgaaaaagc
     1261 cgctatgatc gccggataat cgtttgcttt ttttaccacc cgttttgtat gcgcggagct
     1321 aaacgtttgc ttttttgcga cgcagtaaat tgtcgcaaac ctggagcagg aagataacgt
     1381 ttcgctggca ggggattgtc cgccacgcat cttgacgaaa attaaactct caggggatgt
     1441 tttcttatgt ctacgccatc agcgcgtacc ggcggttcac tcgacgcctg gtttaaaatt
     1501 tcacaacgtg gaagcactgt ccgtcaggaa gtggttgccg ggttaacaac gtttctggcg
     1561 atggtctact cggtcatcgt cgttccaggt atgttgggta aagcaggctt cccgcctgcg
     1621 gcagttttcg ttgcaacctg tctggttgcc ggactcggtt ctatcgtgat gggtctgtgg
     1681 gctaatctgc cgttggcgat tggttgcgcc atctccctga cggcgtttac cgcattcagc
     1741 ctggtgctgg ggcaacatat tagcgtacct gtcgcgctgg gtgccgtgtt cctgatgggt
     1801 gtgctgttta cggtaatttc tgccacgggt atccgtagct ggattttgcg caacttgccg
     1861 cacggtgtgg cgcacggcac ggggatcggt atcggtctgt tcctgctgct cattgccgct
     1921 aatggtgttg gtctggtgat taaaaacccg cttgatggtc tgcccgttgc gctgggtgat
     1981 ttcgcgacct tcccggtgat tatgtcactg gtaggtctgg cggtgatcat cggcctggaa
     2041 aaactgaaag tccctggtgg cattctgctg accattatcg gtatctcaat tgtcggtttg
     2101 atcttcgatc ctaacgtcca tttctccggc gttttcggca tgccttcatt gagcgatgaa
     2161 aacggcaatt cactgattgg cagcctggac attatgggcg cgctgaatcc tgtagtcctg
     2221 ccaagcgttc tggcgctggt gatgacggca gtatttgatg ccaccggaac tatccgtgcc
     2281 gtcgccggcc aggcgaacct gctggataaa gatgggcaga tcatcgacgg tgggaaagca
     2341 ctgaccactg actccatgag cagcgttttc tctggcctgg tgggtgctgc tccggcagcg
     2401 gtatacatcg agtctgcggc gggtacggcg gcgggcggta aaaccggttt gacggctatc
     2461 accgttggcg tgctgttcct gctgattctg ttcctctctc cgctctctta cctcgttccg
     2521 gggtatgcaa cggctccggc gctgatgtac gttggcctgc tgatgctgag caacgtggcg
     2581 aaaatcgact ttgctgattt tgttgatgcg atggcgggtc tggttacggc ggtattcatc
     2641 gtgctgacct gtaacatcgt aacaggcatc atgatcggct tcgcgactct ggtgattggt
     2701 cgtctggttt ccggcgaatg gcgcaagttg aacatcggta cggtcgttat cgccgtggcg
     2761 ctggtgacct tctatgcggg tggctgggct atctaatctt tcatcggatt ctgaaaacgg
     2821 gtggcaatgg ctgcccgttt ttattttctc cgcacattgt gtgagctttt gcgatattct
     2881 gaaaaaatga gaattcaggc ataacgcctt tctcagatca taaaaaaaca tcgcaaacag
     2941 ggaacgcatg gaaatcttct tcaccatact gataatgacc ctcgtggtct cgctgtccgg
     3001 ggtggtcact cgtgtcatgc cctttcagat cccgcttccg cttatgcaaa tcgccatcgg
     3061 tgcgctactg gcgtggccga cgtttggttt gcatgtggag tttgatcctg aactcttttt
     3121 agtcttgttt atcccgccgt tgctgttcgc tgatggctgg aaaacgccga cccgtgaatt
     3181 tctcgaacat ggtcgagaga ttttcggcct cgcgctggcg ctggtggtgg tcaccgtggt
     3241 cggcattggc ttccttattt actgggtggt gccgggcatt ccgctgatcc ccgcctttgc
     3301 gctggcggcg gtactttctc cgaccgatgc tgtggcgctc tccggaattg ttggcgaagg
     3361 gcgcatcccg aaaaaaatca tgggcatttt gcagggcgaa gcgttgatga atgacgcctc
     3421 cggcctggtg tcgttgaagt ttgccgtggc agtggcgatg gggacgatga tcttcaccgt
     3481 cggcggtgcg acggtcgaat ttatgaaagt agccattggt ggtattcttg ccggttttgt
     3541 ggtgagctgg ctgtatggtc gctcgctgcg attcctcagc cgctggggcg gtgatgaacc
     3601 cgcgacgcag atcgttctgc tgttcttgct gccattcgct tcttatctga ttgccgaaca
     3661 tattggcgtt tccggcatcc tcgctgcggt tgccgccggg atgaccatca cccgctccgg
     3721 tgtgatgcgc cgtgcgccgc tggcaatgcg cctgcgcgca aacagcacct gggcgatgct
     3781 ggaatttgtc tttaacggca tggtgttcct gctgttaggt ctgcagctgc cgggtattct
     3841 ggagacgtcg ctgatggcgg cagaaatcga ccctaacgtc gaaatctgga tgctgtttac
     3901 cgatattatt ctgatatatg cggcgctgat gctggtccgt ttcggctggc tgtggacgat
     3961 gaaaaagttc agcaaccgct tcctgaagaa gaagccgatg gagtttggtt cgtggaccac
     4021 acgagaaatc ctgatcgcgt ctttcgccgg ggtgcgtggg gcgatcactc tggccggtgt
     4081 gctctctatc ccgctgctct tgccggatgg taacgtcttc ccggcgcgct atgagctggt
     4141 gttcctggcg gctggcgtca ttctcttctc gctgtttgtc ggtgtggtga tgttgcctat
     4201 tctgctacaa cacattgaag tcgcggatca ttcgcaacaa ttgaaagagg aacgtattgc
     4261 gcgagcggca acggcagaag tggcgattgt ggcgatccag aaaatggagg agcgtctggc
     4321 ggcggatacc gaagagaata tcgataacca gctgcttacg gaggtcagtt ctcgcgtcat
     4381 tggtaacctg cgtcgtcgcg ccgatggacg taacgacgtt gaaagttccg tgcaggaaga
     4441 gaaccttgag cgtcgcttcc gtctggcggc attgcgttct gaacgtgctg aactgtacca
     4501 cctgcgcgcc acgcgggaga tcagcaacga aacgctgcaa aaattactgc acgatctcga
     4561 tttgcttgaa gcgttgctaa ttgaggaaaa tcagtaagcc gaaagcgacg taaccaggcc
     4621 cgaggtaatc tgaaaaaggt gcaatctttt gcacctttaa caggttagct cgggctaaca
     4681 ttcatgattc taaaacaaat aagttatctc tcttgtaaag tcaattcatt ggctgttctt
     4741 cgacttaacc tcaatctgcg tgttgcataa tatctgcagt aatcttcata gcgactgcat
     4801 taatattatc ctcagtttgt gacatgccag tatgagaggt acaatcttct tcaaagaatt
     4861 tctgtagtgt taccagggta tcactatcaa tggggatatt ttcctctcca cggagtatgg
     4921 aaatgcccat tccctggacg ctagcctcat caaaattaac ccgatagaga cgggtattaa
     4981 acata
//
LOCUS       DAJVUP010000220         4944 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.220, whole genome shotgun sequence.
ACCESSION   DAJVUP010000220 DAJVUP010000000
VERSION     DAJVUP010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.220"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..145)
                     /locus_tag="OQQ75_003957"
     CDS             complement(<1..145)
                     /locus_tag="OQQ75_003957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS1978103.1"
                     /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR
                     WPAL"
     gene            complement(295..660)
                     /locus_tag="OQQ75_003958"
     CDS             complement(295..660)
                     /locus_tag="OQQ75_003958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2799 domain-containing protein"
                     /protein_id="HCS1978104.1"
                     /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG
                     SAIKDDDAFGDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVESASQ
                     LHEVWQKGADENASTIRLN"
     gene            868..1938
                     /gene="aroF"
                     /locus_tag="OQQ75_003959"
     CDS             868..1938
                     /gene="aroF"
                     /locus_tag="OQQ75_003959"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroF"
                     /protein_id="HCS1978105.1"
                     /translation="MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKTI
                     SDIIAGRDPRLLVVCGPCSIHDLETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT
                     VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW
                     SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ
                     VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY
                     RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE
                     MTDALLREIHQDLNGQLTARVA"
     gene            1949..3070
                     /gene="tyrA"
                     /locus_tag="OQQ75_003960"
     CDS             1949..3070
                     /gene="tyrA"
                     /locus_tag="OQQ75_003960"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HCS1978106.1"
                     /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPI
                     YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV
                     IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG
                     KLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR
                     KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ
                     LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLKQG
                     DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ"
     gene            complement(3113..4273)
                     /gene="pheA"
                     /locus_tag="OQQ75_003961"
     CDS             complement(3113..4273)
                     /gene="pheA"
                     /locus_tag="OQQ75_003961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydratase"
                     /protein_id="HCS1978107.1"
                     /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR
                     PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH
                     SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN
                     TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK
                     FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQQQN
                     FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH
                     GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT"
     misc_feature    complement(4296..4421)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            complement(4373..4420)
                     /gene="pheL"
                     /locus_tag="OQQ75_003962"
     CDS             complement(4373..4420)
                     /gene="pheL"
                     /locus_tag="OQQ75_003962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheA operon leader peptide PheL"
                     /protein_id="HCS1978108.1"
                     /translation="MKHTPFFFAFFFTFP"
     gene            complement(4524..4865)
                     /gene="raiA"
                     /locus_tag="OQQ75_003963"
     CDS             complement(4524..4865)
                     /gene="raiA"
                     /locus_tag="OQQ75_003963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HCS1978109.1"
                     /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE
                     PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK
                     DANFVEEVEEE"
BASE COUNT         1205 a         1130 c         1264 g         1345 t
ORIGIN      
        1 atagcgcagg ccagcgggtg taactgacaa taccggaaac catcatacgc acgtttttcg
       61 caacgtcaga aggctcctga gcgagtattg gtgctcccgt cagcaggaga atcagaagta
      121 agaacagtcg gtgagaaaaa cgcattcagg gatccccacc ttcttcgctc gaaatgcatc
      181 gatatttttt cagaatgctc attaaaatat cattttttca tgcgatcgtc atcaatgtga
      241 gaaataaaac acaatgagta aaatcttatg tttaatttat ttgtggggtt ttaattaatt
      301 taatcgtatt gtgctggcat tttcatcagc ccctttttgc catacttcat gcagttggct
      361 ggcactttca acattgttac agctggcagg aaagctttta ccggaaagtc cccgggcata
      421 agtaaaatcg gtctggcaag ttttcttttg tccttcggca tatcctttaa ggtatagacc
      481 gcgatccgcc tgtgaatcgc caaatgcatc gtcatctttt atggcgctgc ccgatatcgc
      541 atcttccata ccgacatcat accagtcggt gctggtcaag gttggcgcgt gagtataagg
      601 atcaatctga catccgctaa ccagtaaagc caataagggg gcgataaact ttttcatcat
      661 ttctttctcc tttttcaaag catagcggat tgtttttaaa gggggtgtaa atttatttgt
      721 acgaaataag catcaaagcg cgagtaaatt gttcgtgtaa agaaaagcgt acgaaatatg
      781 gattgaaaac tttactttat gtgttatcgt tacgtcatcc tcgctgagga tcaactatcg
      841 caaacgagca taaacaggat cgccatcatg caaaaagacg cgctgaataa cgtacatatt
      901 accgacgaac aggttttaat gactccggaa caactgaagg ccgcttttcc attgagcctg
      961 caacaagaag cccagattgc tgactcgcgt aaaaccattt cagatattat cgccgggcgc
     1021 gatcctcgtc tgctggtagt ttgtggtcct tgttccattc atgatctgga aactgctctg
     1081 gaatatgctc gtcgatttaa agcccttgcc gcagaggtca gcgatagcct ctatctggta
     1141 atgcgcgtct attttgaaaa accccgtacc actgtcggct ggaaagggtt aattaacgat
     1201 ccccatatgg atggctcttt tgatgtagaa gccgggctgc agatcgcgcg taaattgctg
     1261 cttgagctgg tgaatatggg actgccactg gcgacggaag cgttagatcc gaatagcccg
     1321 caatacctgg gcgatctgtt tagctggtca gcaattggtg ctcgtacaac ggaatcgcaa
     1381 actcaccgtg aaatggcctc cgggctttcc atgccggttg gttttaaaaa cggcaccgac
     1441 ggcagtctgg caacagcaat taacgctatg cgcgccgccg cccagccgca ccgttttgtt
     1501 ggcattaacc aggcagggca ggttgcgttg ctacaaactc aggggaatcc ggacgggcat
     1561 gtcatcctgc gcggtggtaa agcgccgaac tatagccctg cggatgttgc gcaatgtgaa
     1621 aaagagatgg aacaggcggg actgcgcccg tctctgatgg tagattgcag ccacggtaat
     1681 tccaataaag attatcgccg tcagcctgcg gtggcagaat ccgtggttgc tcaaatcaaa
     1741 gatggcaatc gctcaattat tggtctgatg atcgaaagta atatccacga gggcaatcag
     1801 tcttctgagc aaccgcgcag tgaaatgaaa tacggtgtat ccgtaaccga tgcctgcatt
     1861 agctgggaaa tgaccgatgc cttgctgcgt gaaattcatc aggatctgaa cgggcagctg
     1921 acggctcgcg tggcttaaga ggtttattat ggttgctgaa ttgaccgcat tacgcgatca
     1981 aattgatgaa gtcgataaag cgctgctgaa tttattagcg aagcgtctgg aactggttgc
     2041 tgaagtgggc gaggtgaaaa gccgctttgg actgcctatt tatgttccgg agcgcgaggc
     2101 atctatgttg gcctcgcgtc gtgcagaggc ggaagctctg ggggtaccgc cagatctgat
     2161 tgaggatgtt ttgcgtcggg tgatgcgtga atcttactcc agtgaaaacg acaaaggatt
     2221 taaaacactt tgtccgtcac tgcgtccggt ggttatcgtc ggcggtggcg gtcagatggg
     2281 acgcctgttc gagaagatgc tgacactctc gggttatcag gtgcggattc tggagcaaca
     2341 tgactgggat cgagcggctg atattgttgc cgatgccgga atggtgattg ttagtgtgcc
     2401 aatccacgtt actgagcaag ttatcggcaa attaccgcct ttaccgaaag attgtattct
     2461 ggttgatctg gcatcagtga aaaatggacc attacaggcc atgctggcgg cgcacgatgg
     2521 cccggtactg gggttacacc cgatgttcgg cccggacagc ggtagcctgg caaagcaagt
     2581 tgtggtctgg tgtgatggac gtaagccgga agcataccaa tggtttctgg agcaaattca
     2641 ggtctggggc gctcggctgc atcgtattag cgctgtcgag cacgatcaga atatggcgtt
     2701 tattcaggct ctgcgccact ttgctacttt tgcttatggg ctgcatctgg cagaagaaaa
     2761 tgttcagctt gagcaacttc tggcgctctc ttcgccgatt taccgccttg agctggcgat
     2821 ggtcgggcga ctgtttgctc aggatccgca gctttatgcc gacattatta tgtcgtcaga
     2881 gcgtaatctg gcgttaatca aacgttacta taagcgtttc ggcgaggcga ttgagttgct
     2941 gaagcagggc gataagcagg cgtttattga cagtttccgc aaggtggagc actggttcgg
     3001 cgattacgca cagcgttttc agagtgaaag ccgcgtgtta ttgcgtcagg cgaatgacaa
     3061 ccgccagtaa taatccagtg ccggatgatt cacatcatcc ggcacctttt catcaggttg
     3121 gatcaacagg cactacgttc tcacttgggt aacagcccaa taccttcatt gaacgggtaa
     3181 tttcacctaa ctctttcaat gctttttgca tttccgctga ttcaagattg gcctgaatat
     3241 ccagataaaa catctcttcc catggattac cgtgaatcgg gcgtgattcc agacgggtca
     3301 taatcagatt gtggttgcgc agcaccagca acgcttcaac cagcgcaccg gcttgttgcc
     3361 cggtcgccat taacaacgtc gttttcgccg gaacctggtc agacacgtta atggctttac
     3421 gtgccaacac cacaaatcgg gtgaagtttt gttgctgatt cgcttcaata cgctccagta
     3481 cctgcaaacc gtacaaagtg ccgccagctt cgcttcccaa cgcagcaaca tgcggtgatt
     3541 ttgcctgtgc aaccttttcc attgccgcag acgtactttc ggtatattca atcttccagt
     3601 gaggataacg attaaggaat ttgctgcatt gctggaatgg ctgcggatgg ctgtagaccg
     3661 tattaatggt ggataaatca gtcgtgccgg agaccaacaa acaatggtcg atagttaacg
     3721 tcatctcgcc aacaatcgac aagctggtat gttgcagcag atcgtaaacg tcgtttatgg
     3781 caccggagct ggtattttca atcggtacga cggcatagtc ggcctggccg gtttccacct
     3841 gattaaaaat atcggcaaat ttggcgcagc cactttcaat gaattgctca aagtgacggg
     3901 cagcatactg gcgcgccgca agatgggaat aagaaccttt ggggccgaga aaagcgatgc
     3961 gtgctgagtg cggattaatt ttattgagat gttgctggag caaagcctgc tgagttaata
     4021 cggaatcttc aatgatgagc tggaacaggc gagtaatgta atgggcgtcc agatggtgcg
     4081 ctttaccgag cgtaattaat ctttccagta aatcgcgttc acgatcaata tctcgtaccg
     4141 ggcgatgcga gagcagtttg gcttttccca cctcgacggc cagttcgcgc cgctctgcca
     4201 gtaatgctaa taatttttca tccagcgcgc tgattttctc tcgcagcgcc agtaatggat
     4261 tttccgatgt catagtgttg ccttttttgt tatcaataaa aaaggccccc cggtttggga
     4321 ggccttattg ttcgtcttcg cattctgttt cacacgacga aacgcctccc attcagggga
     4381 aggtaaaaaa gaatgcgaag aaaaacggtg tgtgtttcat gtttgtttcc ttaagtgact
     4441 ttagtacagt acccgtactg ttttcacgct gtcaacaaaa aacgcgcccg aaggcgcgtt
     4501 ggcgatacac tcaatataaa ggactactct tcttcaactt cttcgacgaa gttggcgtct
     4561 ttcaccgatg ttgcggcacg acgtgcttcg cctttgtgct gcagtttatt gagctgccgt
     4621 tccagcttgt tgatcaattc gttaattgca gtgtacatat cttcatgttt accactggca
     4681 accagaacgc cgttaggtgt attgattgtg gcgtcagcaa caaacccttg tggctctttg
     4741 gacagaatga tatgtggatt aatcagatgt gtttgccatt tttccagttt ggcgagacgg
     4801 tctgcgacat gttggcggat ggccggagta atttccattt gtttgctggt aatgttcatt
     4861 gtcataaatt ttacctcttg tcttcccgtc ttggtgaatt cagcataccg ttcctgatgt
     4921 caaaatgtgt gatgggaatc tcat
//
LOCUS       DAJVUP010000221         4911 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.221, whole genome shotgun sequence.
ACCESSION   DAJVUP010000221 DAJVUP010000000
VERSION     DAJVUP010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4911
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.221"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..3318)
                     /gene="sigA"
                     /locus_tag="OQQ75_003964"
     CDS             complement(<1..3318)
                     /gene="sigA"
                     /locus_tag="OQQ75_003964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease autotransporter toxin SigA"
                     /protein_id="HCS1978110.1"
                     /translation="MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSI
                     YGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVP
                     DFSAVSNKGATTSIGGAYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRL
                     NKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF
                     GQNYNPDLLSASLFNLDWKNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHG
                     VTSTVGFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVS
                     GGGELTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGD
                     NLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSES
                     GNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGN
                     VSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN
                     NNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNL
                     ENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSA
                     GESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIE
                     LAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILF
                     GVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS
                     LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGS
                     NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH
                     TTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEVGAWARI
                     MSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSV
                     GAGLYASAIFDSGAYIDL"
     gene            complement(3679..4683)
                     /locus_tag="OQQ75_003965"
                     /pseudo
     CDS             complement(3679..4683)
                     /locus_tag="OQQ75_003965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003557916.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
     gene            4680..4911
                     /locus_tag="OQQ75_003966"
                     /pseudo
     CDS             4680..4911
                     /locus_tag="OQQ75_003966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080195.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         1209 a         1087 c         1093 g         1522 t
ORIGIN      
        1 caggtcgata taggcaccag agtcaaatat agcggaagca tacagacctg ccccgacgga
       61 cttcgtcttg ccactgaatg cattactgct ggcatgactg tcggtatacg tcatagtcag
      121 accagtgaaa aggtcaagtc catccagctc atgtttttta tccacaccaa tctgcacatg
      181 ggtgtagttg tcactgtatc caccagaagc tgaacctgct ccgctcatga tgcgggccca
      241 tgcaccgacc tcgccattgg tgtcacgcag atcccccatt cgtttattca ggttgttgac
      301 ttctgtcagg aaggctttgt aattaccgga catatacgat tttgctgcac tggaagatgc
      361 tgtattttca gccaccttat atccggtcag ggtccacgtg gtatgttcct gatcctcttt
      421 cgtgctgatc acaggagata tgttgctgaa acctatggcc tgagtactgg ctttaaatat
      481 ctctttattg cttccttttg gggctgttat caggtcaacg tttaatcctg agttattatt
      541 tcccactttc tgtatatcga ccgacagact gttattgctt ccggttaact gatttttaac
      601 aatgagttta tccgattgat ttacagactg gctcagatca gcccgcataa tcacagcagt
      661 attagtggca tccagtgtgt ttactgtcac agtatggaaa cccgaattct ctatgttact
      721 aaacaacaaa agactgtcgc gggtttttaa tgattgcagg gctgactgtc cgtttactct
      781 ccataaggtg ttatacatgc tggctgaggc agcaggagca tcaatacctc cggtataaga
      841 agtatcaaag ccacccagca aacctgtagc cagcggtgtg tgtgtggttt tgtccaggtt
      901 atcttcttta tactggtcaa caccaaacag aatagatgct tttttgtctg attttatatt
      961 accattgacc caggcataat tttgagcctt taacgtggca ccatcttctg tcatattata
     1021 tccatctgac atatagattg ccgggctgta tttattattt tctgtagggg tgcctgttaa
     1081 tgtcagggtt ccggccagtt caatagcttt atctacatac atttttccct gggcggtaac
     1141 agtagctcct ttgttgataa tcaggtctgt attaattaag gataatgcac cagtcatagt
     1201 aacagttgat ttatcaccaa cagttatttt gctgttttga gcactcagac tgccgttgaa
     1261 actactttcg cctgctgaat ccccggagcg aagctgttgt ctgaatccaa aaccttcgcc
     1321 agtaatgttt cttcctgaga acatgtcaat gtatgcagtt ttatttccca gaacaatttg
     1381 agagttttta gcctctatgt gtccttttac attagcatcc cggcctatac tcagggttgc
     1441 gttttctaaa tttaatttcc ggaaattaaa tttacgactt tcccagtcgg gctgggaaaa
     1501 agaggctatc tgattgttgg acttatattc cgtattgtaa cgtttattta cagtgctttc
     1561 ctggtccttt atggcagcag aatagtcttt ttgacataaa aaaggaattg gacagttgtt
     1621 attgccttct ttaaatatgg catgttctgt cgcatgtcct tgtaatgtta actgtgcatt
     1681 ccggacagag atatcgtttt tgatatcgac tgagccatca aagatcagat tggcattatt
     1741 gttatgttgc tgggtagtat tgataatatg atttatgctt atattacctg atacattccc
     1801 atggtacata tatgcatcag tattagtaag tgataatgtt gattgcttca cgtttgagtt
     1861 cgttacggtt gttcccgcat ctgttgctgc gattttctga aatgactggt catagccgtt
     1921 tagatccagt gttccgccat ttctggtaaa atagatttcg ccattaccgc tttcgcttaa
     1981 agcgtctttg gcatttattt ttaccgtacc tttacctccg gccatgtaaa ttttattgaa
     2041 ggctttttca gcactaagga tgacagtccc attacctatt ttaaggttat ttccctgtgc
     2101 tatttttaca tccagagtac cactacctat tttatgcaga ttatctccgg caacgccctt
     2161 aacattccat tcaacggtgg tattattatc aatatctatc ccggcacctt tataagactt
     2221 atcttttccg tacactttat atgtctggtt cttatcgaat ataagcccgc caatgccaag
     2281 atcggtatcc tgcttgagcg ttaattcccc tcctcctgag acagacaggt ccttatcttt
     2341 tataatcgat gataactctt gttttttacc atccagctgc atagtgtttg tgaaattctt
     2401 ttttaaattg tttaccagaa tattattaaa taacgagtag tttgtccagg ctatattggt
     2461 actactgata aaaccaactg tactggtaac accatggaaa acccattttt gttgttcttt
     2521 atcatataga taagaaccag aaccactatc gccaaaaatt ggtgagtttt taaaaggggt
     2581 tctgttggta taaatgtaac tcttgttttt ccagtccaga ttaaaaagac ttgcgcttaa
     2641 caagtcggga ttatagtttt gtccaaacag atattgtttg ccgtttaata tcgttgaggt
     2701 tgttccggca cctgctctga agccaattat ttgttcctta ccgttgtagt ttacgccata
     2761 tcttttcatc gcatcttcgg gagaaagtga gaagtcggca ctctccgtaa cccctgttgt
     2821 ttccacgacg aatttattca gacgatgaac cgaaaagtcg ccagatgata ctctgttact
     2881 tgctttatat gctgtctgat cccatgactg tgttgttatt gcatgatgct gtgtaccgtt
     2941 atgagtcgca gtaacactgt acgcacctcc aattgatgtt gttgcacctt tgttggaaac
     3001 agcagaaaaa tcaggtacag gtagttctgg aaaatgaaat atctttccat ctttcatcat
     3061 taattgaaca tttgttgcac ccggtctgaa ctctcctctg ttttgagcaa ggtcaagata
     3121 atcgcgggtc catatattat ttatatccag cattgctgca aatgctgttt caccataact
     3181 tccatatatt gaggataaaa taataccgag gataactttc tttcttgatg taccgacact
     3241 aactttccgg gtcagttcag aaacagcaac taatccacct gtaatatgac tatatttcag
     3301 tgaataaatt ttattcatac gtgaactccg atatttctga gttgtggtta tgggatagca
     3361 tttaattaca acggggaact atcagtcatg gtacgtaact gataagggta taatgataat
     3421 cactgtcagt tatatttgta tgacagatgt aacaaaatga aaaaaaagat aagcacaagt
     3481 gattgattgg tcagatattg atcacctggt gtttgtattt tgacctttgc gatcaaaatt
     3541 tgatctttgt tgtttccggt caatccttta caggttttct gtattatccg ggggagttaa
     3601 gtctgtcgat gtccgacaga cttttgatga tggaaacaac atgcagcgat aatgtgcatg
     3661 ctgttttgca ggtggaactc agaaggtgaa ctggaactgt gcgaccgcac cgtaagtgtt
     3721 gtccgtgccg atcaggcctg caacatcaag gtgaaccaca tcaaacggtg agatccccac
     3781 cccggccgtg aatgcactgc cgtcgttacc ggccagattc tgacggtaac cggcgcgcag
     3841 ctgtgcccat ttccaggcat taaattctgc gccaatggcg gcaaactgac ggttgctgtc
     3901 ggaggtgaaa ccgctggccg gggtcagatc cacatcaaat gcggtggtga acatcgcgtt
     3961 gtgccaggag acaccggccg tcacctgcgg gcggatcctg aaggtttccg tgataccgtt
     4021 cacttctttt gtctcaatac tacgggggat caggttctgt gcgaccagtc ccagcgtcca
     4081 gttgtcatcc aggttcgtac tggcaccgat gtcggcgttg atgccatttt tcgtgttgtg
     4141 gtagcggtcg cctttgaagg cgctgctgtc ataatttctg accagcacgt tgtagttgaa
     4201 caggtcgacg cgctggaatt tgggggggaa gcccagagac catttctgcc cggccgtttc
     4261 cagttccgta gccagagcaa tacccacatc agtgatcagt gccgcgcggg caaaggcctg
     4321 tgatgtcagg cggcttttgt ccacctcctg cccggtgctg tttgccacct cttccaggta
     4381 agtgaggtca gcatcagaga ctttaccgtc gacactgacg gtgccgtgtg atttaaccat
     4441 cagtgcggca gagaggcgat caccgggaag ggccgccaca gcagaaacgc ccagctgtgc
     4501 ggcggcatgt gtgttacgga agtcccggag gtgttctttc aggcgtgcgg cagcctcagg
     4561 aacaccgtgg ttactttcga tggcgcggtc gaaggccttc cactcatcac tgatccggtc
     4621 ggcgttgtcg gtgatattat ccggattgga gagctgcgcg ccgacggacg gaagcaggat
     4681 gctgggctca tgcgcgacgc aaaatccacg atgtatatat cagtactaaa agcgcgacgg
     4741 cggaagaagc tctgaaacta atcggtgaac tgtacgccat agagcacgat atacgcgggt
     4801 taccggtgtc tgaacgcctg gcggtcaggc aaatgcagag tagaccgctc ctgacttccc
     4861 tgtataagct gatgcaggag aaagaacaca cgttatcgaa gaaatgtcgt c
//
LOCUS       DAJVUP010000222         4885 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.222, whole genome shotgun sequence.
ACCESSION   DAJVUP010000222 DAJVUP010000000
VERSION     DAJVUP010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4885
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.222"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..247)
                     /locus_tag="OQQ75_003967"
     CDS             complement(<1..247)
                     /locus_tag="OQQ75_003967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HCS1978111.1"
                     /translation="MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQL
                     PAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLAN"
     gene            505..1284
                     /gene="deoC"
                     /locus_tag="OQQ75_003968"
     CDS             505..1284
                     /gene="deoC"
                     /locus_tag="OQQ75_003968"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005097947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HCS1978112.1"
                     /translation="MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQTKTPVGNTA
                     AICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVD
                     VVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK
                     AGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI
                     ADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY"
     gene            1411..2733
                     /gene="deoA"
                     /locus_tag="OQQ75_003969"
     CDS             1411..2733
                     /gene="deoA"
                     /locus_tag="OQQ75_003969"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313368.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HCS1978113.1"
                     /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM
                     TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMV
                     AACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL
                     APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSE
                     ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT
                     MALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYL
                     PTAMLTKAVYADTEGFVSEMDARALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ
                     VDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE"
     gene            2785..4008
                     /gene="deoB"
                     /locus_tag="OQQ75_003970"
     CDS             2785..4008
                     /gene="deoB"
                     /locus_tag="OQQ75_003970"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS1978114.1"
                     /translation="MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEAD
                     NGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGH
                     WEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
                     MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIG
                     DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKAT
                     GLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMS
                     LLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLA
                     KYFGTSDMEYGKAMF"
     gene            4088..4807
                     /gene="deoD"
                     /locus_tag="OQQ75_003971"
     CDS             4088..4807
                     /gene="deoD"
                     /locus_tag="OQQ75_003971"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HCS1978115.1"
                     /translation="MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVR
                     GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLR
                     DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLF
                     YSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER
                     QTTFNDMIKIALESVLLGDKE"
BASE COUNT         1166 a         1254 c         1356 g         1109 t
ORIGIN      
        1 cgttcgccag aaaacgggcg taatcgggta agacatagcg cggtttgtac ggcgcatgac
       61 cttcaaacat atcgcagatt acaccctcat ccagcgcgcg gcgggcttcg gcaggaagct
      121 gcggataagg cagattgttt tctgcttcca gagccagaaa atggcgcttc tgctccgggc
      181 taagcactgg gctggtgaca atttgctggc aacgttgttg cagtgcattt tcatgagaag
      241 tgggcatctt cttttccttt tatgccgaag gtgatgcgcc attgtaagaa gtttcgtgat
      301 gttcactttg atcctgatgc gtttgccacc actgacgcat tcatttgaaa gtgaattatt
      361 tgaaccagat cgcattacag tgatgcaaac ttgtaagtag attaccttaa ttgtgatgta
      421 tatcgaagtg tgttgcggag tagatgttag aatactaaca aactcgcaag gtgaatttta
      481 ttggcgacaa gccaggagaa tgaaatgact gatctgaaag caagcagcct gcgtgcactg
      541 aaattgatgg acctgaccac cctgaatgac gacgacaccg acgagaaagt aattgctctg
      601 tgtcatcaga ccaaaactcc ggtcggcaat accgccgcta tctgtatcta tcctcgcttt
      661 atcccgattg ctcgcaaaac gctgaaagag cagggcaccc cggaaatccg aatcgctacg
      721 gtaaccaact tcccacacgg taacgatgac atcgaaatcg cgctggcaga aacccgtgcg
      781 gcaatcgcct acggtgctga tgaagttgac gttgtgttcc cgtaccgcgc gctgatggcg
      841 ggtaacgagc aggttggttt tgacctggtg aaagcctgta aagaggcttg cgcggcagcg
      901 aatgtactgc tgaaagtgat catcgaaacc ggcgaactga aagacgaagc gctgatccgt
      961 aaagcgtctg aaatctccat caaagcgggt gctgacttca tcaaaacctc taccggtaaa
     1021 gtggcagtga acgcgacgcc ggaaagcgcg cgcatcatga tggaagtgat ccgtgatatg
     1081 ggcgtagaaa aaaccgttgg tttcaaaccg gcgggcggcg tgcgtactgc ggaagatgcg
     1141 cagaaatatc tcgccatcgc agatgaactg ttcggtgctg actgggcaga tgcgcgtcac
     1201 taccgctttg gtgcttccag cctgctggca agcctgttga aagcgctggg ccacggtgac
     1261 ggtaagagcg ccagcagcta ctaagcaaga tgctttacgc ctgatgcgct gcgcttatca
     1321 ggcctacgag acgtatctac ccgtaggccg gataaggcgt agacgcatcc ggcaaaagcc
     1381 gcctcatact cttttcctcg ggaggttacc ttgtttctcg cacaagaaat tattcgtaaa
     1441 aaacgtgatg gtcatgcgct gagcgatgaa gaaattcgtt tctttatcaa cggcattcgc
     1501 gacaacacta tctccgaagg gcagattgcc gccctcgcga tgaccatttt cttccacgat
     1561 atgacaatgc ctgagcgtgt ctcgctgacc atggcgatgc gagattcagg aaccgttctc
     1621 gactggaaaa gcctgcatct gaatggcccg attgttgata aacattccac cggcggcgtc
     1681 ggcgatgtca cttcgctgat gttggggccg atggtcgcag cctgcggcgg ctatattccg
     1741 atgatctccg gtcgcggcct cggtcatact ggcggtacgc tcgacaaact ggaatccatc
     1801 cctggcttcg acattttccc ggatgacaac cgtttccgcg aaattattaa agacgtcggc
     1861 gtggcgatta tcggtcagac cagctcactg gctccggcgg ataaacgttt ctacgcgacc
     1921 cgtgatatta ccgcaaccgt ggactccatc ccgctgatca ctgcctcgat cctggcgaag
     1981 aaactggcgg aaggtctgga tgcgctggtg atggacgtga aagtgggtag cggcgcgttt
     2041 atgccgacct acgaactctc tgaagccctt gccgaagcga ttgttggcgt ggctaacggc
     2101 gctggcgtgc gcaccaccgc gctgctcacc gacatgaatc aggtactggc ctccagtgca
     2161 ggtaacgcgg ttgaagttcg tgaagcggtg cagttcctga cgggtgaata tcgtaacccg
     2221 cgtctgtttg atgtcacgat ggcgctgtgc gtggagatgc tgatctccgg caaactggcg
     2281 aaagatgacg ccgaagcgcg cgcgaaattg caggcggtgc tggacaacgg taaagcggca
     2341 gaagtctttg gtcgtatggt agcggcacaa aaaggcccga ccgacttcgt tgagaactac
     2401 gcgaagtatc tgccgacagc gatgctgacg aaagcagtct atgctgatac cgaaggtttt
     2461 gtcagtgaaa tggatgcccg cgcgctgggg atggcagtgg ttgcaatggg cggcggtcgt
     2521 cgtcaggcat ctgacaccat cgattacagc gtcggcttta ctgatatggc gcgtctgggc
     2581 gaccaagtag acggtcagcg tccgctggcg gttatccacg cgaaagacga aaacagctgg
     2641 caggaagcgg cgaaagcggt gaaagcggca attaaacttg ccgataaagc accggaaagc
     2701 acaccaactg tctatcgccg tatcagcgaa taacggtata ctgatctgat catttaaatt
     2761 tgaagcactg agtacggaga acatatgaaa cgtgcattta ttatggtgct ggactcattc
     2821 ggcatcggcg ctacagaaga tgcagaacgc tttggtgacg tcggggctga caccctgggt
     2881 catatcgcag aagcttgtgc caaaggcgaa gctgataacg gtcgtaaagg cccgctcaat
     2941 ctgccaaatc tgacccgtct ggggctggcg aaagcacacg aaggttctac cggtttcatt
     3001 ccggcgggaa tggacggcaa cgctgaagtt atcggcgcgt acgcatgggc gcacgaaatg
     3061 tcatccggta aagatacccc gtctggtcac tgggaaatcg ccggtgtccc ggttctgttt
     3121 gagtggggat acttctccga tcacgaaaac agcttcccgc aagagctgct ggataaactg
     3181 gtcgaacgcg ctaatctgcc gggttacctc ggtaactgcc actcttccgg tacggtcatt
     3241 ctggatcagc tgggcgaaga gcacatgaaa accggcaagc cgattttcta tacctccgct
     3301 gactccgtgt tccagattgc ctgccacgaa gaaacctttg gcctggataa actctacgaa
     3361 ctgtgcgaaa tcgcccgtga agagctgacc aacggcggct acaacatcgg tcgtgttatc
     3421 gctcgtccgt ttatcggtga caaagccggt aacttccagc gtaccggtaa ccgtcacgac
     3481 ctggctgttg agccgccagc accgaccgtg ctgcagaaac tggttgatga aaaacacggt
     3541 caggtggttt ctgtcggtaa aattgcagac atctacgcca actgcggtat caccaagaaa
     3601 gtgaaagcaa ctggcctgga cgcgctgttt gacgccacca tcaaagagat gaaagaagcg
     3661 ggtgataaca ccatcgtctt caccaacttc gttgacttcg actcttcctg gggccaccgt
     3721 cgcgacgtcg ccggttatgc tgcgggtctg gagctgttcg accgccgtct gccggagctg
     3781 atgtctttgc tgcgcgatga cgacatcctg atcctcactg ctgaccacgg ttgtgatccg
     3841 acctggaccg gtactgacca cacgcgtgaa cacattccgg tactggttta cggcccgaaa
     3901 gtaaaaccgg gttcactggg tcaccgtgaa accttcgcgg atatcggcca gactctggca
     3961 aaatattttg gtacttctga tatggaatat ggcaaagcca tgttctgata atgggtgcgg
     4021 cttgatgccc tcaccccggc cctctcccac agggagaggg tgaaaacatg ttgataagga
     4081 taaaacaatg gctaccccac acattaatgc agaaatgggc gatttcgctg acgtagtttt
     4141 gatgccaggc gacccgctgc gtgcgaagta tattgctgaa actttccttg aagatgcccg
     4201 tgaagtgaac aacgttcgcg gtatgctggg cttcaccggt acttacaaag gccgcaaaat
     4261 ttccgtaatg ggtcacggta tgggtatccc gtcctgctcc atctacacca aagaactgat
     4321 caccgatttc ggcgtgaaga aaattatccg cgtgggttcc tgtggcgcag ttctgccgca
     4381 cgtaaaactg cgcgacgtcg ttatcggtat gggtgcctgc accgattcca aagttaaccg
     4441 catccgtttt aaagatcatg actttgccgc tatcgctgac tttgacatgg tgcgtaacgc
     4501 ggtagacgcg gctaaagcac tgggcattga tgctcgcgtt ggtaacctgt tctccgctga
     4561 cctgttctac tctccggacg gcgaaatgtt cgacgtgatg gaaaaatacg gcatcctcgg
     4621 cgtggaaatg gaagcggctg gtatctacgg cgtcgctgca gaatttggcg cgaaagccct
     4681 gaccatctgt accgtgtctg accacatccg cactcacgag cagaccactg ccgctgagcg
     4741 tcagaccacc ttcaacgaca tgatcaaaat cgcactggaa tccgttctgc tgggcgataa
     4801 agagtaattg tgtttcgctg aaaggcgatt gtcgtgtgaa gccggagtgg gagactgctc
     4861 cggcttttta gtatctattc atcaa
//
LOCUS       DAJVUP010000223         4862 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.223, whole genome shotgun sequence.
ACCESSION   DAJVUP010000223 DAJVUP010000000
VERSION     DAJVUP010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4862
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.223"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            148..264
                     /locus_tag="OQQ75_003972"
     CDS             148..264
                     /locus_tag="OQQ75_003972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004996477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1978116.1"
                     /translation="MPGIPPEIRWNNQKNALQLWNKEGGVVRREGDPLEMAQ"
     gene            628..1470
                     /locus_tag="OQQ75_003973"
     CDS             628..1470
                     /locus_tag="OQQ75_003973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HCS1978117.1"
                     /translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQMKWLA
                     ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
                     GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
                     TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
                     FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
                     LPDD"
     gene            1473..2561
                     /gene="capU"
                     /locus_tag="OQQ75_003974"
     CDS             1473..2561
                     /gene="capU"
                     /locus_tag="OQQ75_003974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hexosyltransferase CapU"
                     /protein_id="HCS1978118.1"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTW
                     KHPFRIIRQKTYLTQKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
                     QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
                     ARQAKQDIEERFDINKTALKILTLAKHK"
     gene            2566..3516
                     /gene="virK"
                     /locus_tag="OQQ75_003975"
     CDS             2566..3516
                     /gene="virK"
                     /locus_tag="OQQ75_003975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor VirK"
                     /protein_id="HCS1978119.1"
                     /translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
                     VASIRYYYELRSLPCIEDILAIHPTLPARIHRPYLHKGGRAWTRGQYILEHYRFVQNL
                     PEKYSKFLFPQKSVSLVQFIGKDGENFDIQCSSSGFDREGELMLSLFYNKTVITRLTF
                     SVILTQNGHIAFIGGLQGAPKNTGPDVIRCATRACYGIFPKRIIFEAFCALMKACNIS
                     ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYRLPTQVIRKPLSD
                     IASKKRSEYRKRYALLDYIHETTIRSLDAYPVHSEHQDLN"
     gene            3581..4525
                     /gene="lpxM"
                     /locus_tag="OQQ75_003976"
                     /gene_synonym="msbB"
     CDS             3581..4525
                     /gene="lpxM"
                     /locus_tag="OQQ75_003976"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858371.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS1978120.1"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWSTWFLLGMIAGISMFPPSFRDP
                     VLAKIGRWAGRLSKKARRRATINLSLCFPEKSDTEREIIVDKMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRYNNRNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
                     ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
     gene            complement(4679..>4862)
                     /locus_tag="OQQ75_003977"
     CDS             complement(4679..>4862)
                     /locus_tag="OQQ75_003977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HCS1978121.1"
                     /translation="IYQPVYSPWVNHAERLWQALHDTITRNHQCRSMWQLLKKVRHFM
                     ETVSPFPGGKHGLAKV"
BASE COUNT         1386 a          922 c         1116 g         1438 t
ORIGIN      
        1 tatcggtggc aatagcctgt gcaaattttt tataacccgg gatcgtgtca ggattcagag
       61 tatgataaag acagattttc atggctgccg gtttccgtcg tgcaaaaaac atgctgattt
      121 tacgaaggaa tgccttactg aacaaccttg cccggaatac cccccgaaat cagatggaac
      181 aatcagaaaa atgctctgca gttatggaat aaagaaggtg gggtggtacg ccgggagggc
      241 gatccgctgg aaatggcgca gtagctgcag gcctgtcatg atgccggaat agaagttcgt
      301 gtacaggtta atgaaagcgt caccccgtaa ataaactctg cgctgaaatt cctttttttc
      361 attggagcac ctgtgttgtt ctgaggtgaa catatcacct ctgttcaggt agccaaattc
      421 agtgtgccac ctcaaggttc ttagtgagtc gtttttaaaa gatatgataa tatatcattg
      481 tttatgaatt gttgatgttt aatttagtaa aatatatcaa gtatgccatg ggtttgctat
      541 gttattcatc cagtatctgg aaataaaatg caccagcttt attgggtttt ccttttgtct
      601 ctgcttacta ggtgccagaa actttaaatg ttaaacgaag ggggcatttt gttcaaagcc
      661 aatcatgttc cggtattaat gtatcatcat gtcagtcatt gccccggact ggttacactt
      721 tctcccgtga cattccggaa gcaaatgaaa tggttggctg aaaataactg gaaaacactg
      781 tcatcagatg aactggagtt tttttatcgg ggcggaaaac tcccccggaa aagcgttatg
      841 ttgacatttg atgatggata ccttgacaac tggtttcagg tatatccttt attaaaagag
      901 tttaatctca aagcacatat ttttttaatt accggtttta ttgggaatgg tccggttcgt
      961 cactctcctg gaaaggaata ttctcatcgc gattgcgaac atcaaatagc gacagggaat
     1021 gctgataatg ttatgcttcg ctggtctgaa gtaaacgaaa tgttgcaatc tggtctggtc
     1081 gaatttcatg ttcatacgca tactcataca cgctgggata aaaagttcag ttcacgagaa
     1141 gaacagtgta aacatcttcg gcaggacttg ttgagtggga gagaatattt gaaagaaatg
     1201 acaggaaaat gcagtaaaca tttgtgttgg ccggaaggtt attataataa ggattatatt
     1261 caggtcgctg aagaacttgg attctattat ttatatacaa cagaaagaag aatgaatgct
     1321 cctgctaaag gaactacacg gataggaaga ataagcacca aagaacggga aagttgcgca
     1381 tggctgaaaa gacgactttt ttattataca acaccgtttt tttcatcgtt gctggccttt
     1441 cataaggggc caagattacc ggatgattaa taatgaatat actatttacg gaatcatcac
     1501 cgaatatagg tggtcaggaa ttacaggctg ttgctcaaat gaaggccctg aagaaaatgg
     1561 ggcattcagt tctgcttgtc tgcagggaaa acagcaaaat tgcttttgaa gccagtaaat
     1621 tgggaattga tatcacattc gcgttatttc gaaacagtct tcacatccct actgcatgga
     1681 gattactcgg aatagttcat ggttttcagc ccaatgcaat cgtttgtcac agtgggcatg
     1741 atagcaatat tgttggttta gtacggttat tcacttggaa acatccattc agaattatca
     1801 ggcaaaagac atatttgaca caaaaaacaa aagttttttc aataaatcat ttttgcgatg
     1861 aggtgattgt tcccggaaca agtatgaaga cacatctgga gcaggaagga tgtcgaaccc
     1921 gggttactgt tgtgcctcca ggctttgatt tccagaaatt atacgttgat tcccgaaaca
     1981 gtttgcctcc aaatgttctt tcttggctgg cgtcccgaag gggatgcccc gttattgctc
     2041 aggtaggaat gttgcgcccg gaaaaagggc acgaatttat gttgaattta ctgttccatt
     2101 taaaaatgaa tggacgacag ttctgttggt tgattgtggg gtctggttcg cctgaactgc
     2161 gggagcattt acagtatcag attgacagta tgggcatgca tgatgatgtt tttattgctg
     2221 acaatgtttt tcctgccgcc cccgtatatc gggttgccag tctggtggtt ctgccttcag
     2281 aaaacgaatc gtttggtatg gtactggcag aagcatcggc attttctgtg cctgtactgg
     2341 ccagtcagat tggtggaatc cctgatgtta ttcagaacaa ccagaccggg acattgttac
     2401 cagcaggtaa taagcacgca tggatgtgcg ccctgaatga tttttttaat gaccctgggc
     2461 gtttttatca gatggctcgc caggcaaaac aggatataga agagcggttt gatattaata
     2521 aaactgcgtt aaaaatactc acattagcga agcacaagta acaatatgtt ttctgtaagt
     2581 aacttatcat ttatcggttt ccttaaaagg attgtttttt cctcagattc actcccgggg
     2641 aagtgggaac acagaaaatt ccggttcatg tacattttgc gatgtgctat aaatccggtt
     2701 gccagtattc gatattatta cgaactgcgt tccttgccgt gcattgagga tattctggca
     2761 atacacccca cgttgccagc aagaattcat cgcccttatt tgcataaagg ggggcgcgcc
     2821 tggacccgtg gacaatatat tcttgagcat tatcgctttg tgcaaaattt gccagaaaaa
     2881 tattctaaat ttttgtttcc acaaaaatcg gtatcattag tccaattcat cgggaaagat
     2941 ggagagaatt ttgatatcca gtgttcttcc agtggttttg accgggaagg agagttgatg
     3001 ttgtcattgt tttacaataa aacagttatt acccggttaa cattttcagt cattctgact
     3061 caaaatggac acattgcttt tattggcgga ttacagggag cccctaaaaa taccggacct
     3121 gatgttattc ggtgcgcaac ccgggcctgt tatgggattt tcccaaaacg gattattttt
     3181 gaagcatttt gtgcgttgat gaaagcttgc aatatctctg agtgtctggc agtcagtgag
     3241 cacagtcatg ttttccggca attgagatac tggtatcaga aacgcaaaac ctttgttgcg
     3301 gtctatagtg atttctggga gtctgtagca ggaaaaacct gtggtgactg gtacagatta
     3361 ccaacccagg tgattcgaaa gccgctaagc gatatagcca gtaaaaaacg ctctgagtac
     3421 cgaaaacgat acgctttgct ggattatatc catgaaacta ctatccgctc tttggatgca
     3481 tatcctgtac actcagaaca tcaggattta aattaaggtt tgatgtattc tctgaataaa
     3541 acagtaatga taattttggt agaggcattc gcactaaata atgaaaaaat ataaatctga
     3601 gtttattcct gaatttaaga aaaattatct ttcccctgtt tactggtcta catggttcct
     3661 tttgggaatg attgcaggta tttcaatgtt tcccccttca ttcagagatc ctgtcttggc
     3721 aaaaataggg cgttgggcgg gcagattgag caaaaaagct cgtcgcaggg cgacgattaa
     3781 tttatcgctt tgtttcccag aaaagagtga tacagaacgg gaaataattg tcgacaaaat
     3841 gtttgccaca gcattgcaat ccatagtgat gatggcagaa ctggcaattc gtggtccgga
     3901 aaagttccag aaacgagtgt tctggaaagg cctcgaaatt cttgaggaaa ttcgatacaa
     3961 taacagaaat gtgatttttc tggttcccca tggctggagc gtggatattc ctgcaatgtt
     4021 gctggcagct cagggggaaa aaatggccgc catgtttcat cagcaacgaa atccagtgat
     4081 tgattatgtc tggaattctg tacggcgtaa attcgggggg cgcttacatt cccgggagga
     4141 tgggataaaa ccatttattc agtcagtacg ccagggatac tgggggtatt accttccaga
     4201 tcaggatcat ggtcctgaat acagtgaatt tgctgatttt tttgcgacct ataaagcgac
     4261 attaccaatt attggacgtc tgatgaacat cagtcaggct atgattatac cgcttttccc
     4321 ggtttatgat gaaaaaaaac atttcctgac tattgaagtt cggccaccaa tggatgcatg
     4381 cattgccagc gcggacaata aaatgattgc ccgacaaatg aacaaaacag tggaaatttt
     4441 ggtggggtca catccggaac agtatatctg ggttttaaaa ttgttaaaaa cgcgcaaatc
     4501 aaacgaagcg gacccgtacc cttgaaatta taaagtacag gtatttccac tagttgtttc
     4561 ttacaggtta ccaatcgaaa cacatccccc ttccgtgtgt tgcccgtttg gcacggagga
     4621 ctgtgtagat gcagttcgtt aaatttaatt tatgcctaaa tagctgcgct taataccgct
     4681 acacttttgc cagtccatgt ttgcctccgg ggaatgggct gacggtttcc ataaaatggc
     4741 gaactttttt caacagttgc cacattgagc ggcactgatg attacgcgtt attgtgtcgt
     4801 gaagtgcctg ccatagccgt tcagcatgat tcacccatgg cgagtaaacc ggctgataaa
     4861 tg
//
LOCUS       DAJVUP010000224         4783 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.224, whole genome shotgun sequence.
ACCESSION   DAJVUP010000224 DAJVUP010000000
VERSION     DAJVUP010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4783
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.224"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..789
                     /locus_tag="OQQ75_003978"
     CDS             <1..789
                     /locus_tag="OQQ75_003978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA family autotransporter adhesin"
                     /protein_id="HCS1978122.1"
                     /translation="NLNNQVTNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGVDANAQ
                     GKDSVAIGSGSIAAADNSVALGTGSVAEEENTISVGSSTNQRRITNVAAGVNATDAVN
                     VSQLKSSEAGGVRYDTKADGSIDYSNITLGGGNGSTTRISNVSAGVNNNDAVNYAQLK
                     QSVQETKQYTDQRMVEMDNKLSKTESKLSGGIASAMAMTGLPQAYTPGASMASIGGGT
                     YNGESAVALGVSMVSANGRWVYKLQGSTNSQGEYSAALGAGIQW"
     gene            1157..2812
                     /gene="lldP"
                     /locus_tag="OQQ75_003979"
     CDS             1157..2812
                     /gene="lldP"
                     /locus_tag="OQQ75_003979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HCS1978123.1"
                     /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS
                     WTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI
                     IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLC
                     LIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWR
                     GIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFR
                     FGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEW
                     VINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPS
                     DAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLG
                     WLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIAC
                     AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP"
     gene            2812..3588
                     /gene="lldR"
                     /locus_tag="OQQ75_003980"
     CDS             2812..3588
                     /gene="lldR"
                     /locus_tag="OQQ75_003980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LldR"
                     /protein_id="HCS1978124.1"
                     /translation="MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVS
                     RNSLREALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDIL
                     EARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHN
                     IVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAM
                     MAHLSFVHTTMKRFDEDQARHARITRLPGEHNEHSREKNA"
     gene            3585..4775
                     /gene="lldD"
                     /locus_tag="OQQ75_003981"
     CDS             3585..4775
                     /gene="lldD"
                     /locus_tag="OQQ75_003981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent L-lactate dehydrogenase"
                     /protein_id="HCS1978125.1"
                     /translation="MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSE
                     VALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIP
                     FTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE
                     DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG
                     GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLY
                     ALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAK
                     GNAA"
BASE COUNT         1051 a         1270 c         1298 g         1164 t
ORIGIN      
        1 aacctgaaca atcaggtcac taatctggat actcgcgtta ctaatatcga aaacggtatt
       61 ggcgacattg tcaccaccgg tagcaccaag tacttcaaga ccaacaccga tggcgtagat
      121 gccaacgccc agggtaaaga tagcgttgct attggttctg gttccattgc tgccgctgac
      181 aacagcgtcg cactgggtac cggttccgtt gcagaggaag aaaatacaat ctctgtaggt
      241 tcttctacta accaacgccg tatcaccaac gtagctgccg gtgttaatgc caccgatgcg
      301 gttaacgtgt cgcagctgaa atcttctgaa gcaggcggcg tgcgctacga caccaaagct
      361 gatggttcta tcgactatag caatatcacc ctcggtggtg gcaacggcag tacgactcgt
      421 atcagcaacg tctccgctgg cgtcaacaac aacgacgcgg tgaactacgc gcagttgaag
      481 caaagcgtgc aggaaacgaa gcaatacacc gatcagcgga tggttgagat ggataacaaa
      541 ctgtctaaaa ctgaaagcaa gttgagcggt ggtatcgctt ctgcaatggc aatgaccggt
      601 ctgccgcagg cttatacacc gggtgccagc atggcttcta ttggtggcgg tacttacaac
      661 ggtgaatcgg cagttgcttt aggtgtatcg atggtgagcg ccaatggtcg ttgggtctac
      721 aaattacaag gtagtaccaa tagccagggt gaatactccg ccgcactcgg tgccggtatt
      781 cagtggtaat gatccattaa gttagtgtga ctaagggcaa acgccaaatt gcctgatgcg
      841 ttacgcgcat caggcaagat aaggcgctcc gggtcaacaa tctaagggca attctctgat
      901 gaggattgcc cttttcttta ccagacatct ccccccacaa gaattggccc taccaattct
      961 tcgcttatct gacctctggt tcacaattcc ccaattaaaa ctcacatcaa tattgccaat
     1021 acacaacatt tagttaacca ttcattgtca ttatccctac acaacacaat tggcagtgcc
     1081 acttttacac aacgtgtgac aaggagatga gcaacagact cattacacga tgtgcgtgga
     1141 ctccaggaga cctgcaatga atctctggca acaaaactac gatcccgccg ggaatatctg
     1201 gctttccagt ctgatagcat cgcttcccat cctgtttttc ttctttgcgc tgattaagct
     1261 caaactgaaa ggatacgtcg ccgcctcatg gacggtagca atcgcccttg ccgtggcttt
     1321 gctgttctat aaaatgccgg tcgctaacgc gctggcctcg gtggtttatg gcttcttcta
     1381 tggtttgtgg cccatcgcgt ggatcattat tgcagcagtg ttcgtctata agatctcggt
     1441 gaaaaccggg cagtttgaca tcattcgctc gtctattctt tcgataaccc ctgaccagcg
     1501 tctgcaaatg ctgatcgtcg gtttctgttt cggcgctttc cttgaaggag ccgcaggctt
     1561 tggcgcaccg gtagcaatta ccgccgcatt gctggtcggc ctgggtttta aaccgctgta
     1621 cgccgccgga ctgtgcctga ttgttaacac cgcgccagtg gcatttggcg cgatgggcat
     1681 tccaatcctg gttgccggac aagtaacagg catcgacagt tttgagattg gccagatggt
     1741 ggggcgtcag ctaccgttta tgaccattat cgtgctgttc tggatcatgg cgattatgga
     1801 cggctggcgc ggtatcaaag agacgtggcc tgcggtcgtg gttgcgggcg gctcgtttgc
     1861 catcgctcag taccttagct ccaacttcat tgggccggag ctgccggaca ttatctcttc
     1921 gctggtatca ctgctctgcc tgacgctgtt cctcaaacgc tggcaaccag ttcgcgtatt
     1981 ccgcttcggt gacttggggg cgtcacaggt tgatatgacg ctggcccaca ccggttacac
     2041 cgcgggtcag gtgttacgtg cctggacacc gttcctgttc ctgaccgcta ccgtaacact
     2101 gtggagcatc ccgccgttta aagccctgtt cgcatcgggt ggtgcgctgt atgagtgggt
     2161 gatcaacatt ccggtgccgt acctcgataa actggttgcc cgtatgccac cagtggtcag
     2221 cgaggctaca gcctatgccg ccgtgtttaa gtttgactgg ttctctgcca ccggcaccgc
     2281 cattctgttt gctgcactgc tctcgattgt ctggctgaag atgaaaccgt ctgacgctat
     2341 cagcaccttc ggcagcacgc tgaaagaact ggctctaccc atctactcca tcggcatggt
     2401 gctggcgttc gcctttatct cgaactattc cggactgtca tcaacactgg cactggcact
     2461 ggcgcacacc ggtcatgcat tcaccttctt ctcgccgttc ctcggctggc tgggggtatt
     2521 cctgaccggg tcggatacct catctaacgc cctgttcgcc gcgctgcaag ccaccgcagc
     2581 acaacaaatt ggcgtctctg atctgttgct ggttgccgcc aataccaccg gtggcgtcac
     2641 cggtaagatg atctccccgc aatctatcgc tatcgcctgt gcggcggtag gcctggtggg
     2701 caaagagtct gatttgttcc gctttactgt caaacacagc ctgatcttca cctgtatggt
     2761 gggcgtgatc accacgcttc aggcttatgt cttaacgtgg atgattcctt aatgattgtt
     2821 ttacccagac gcctgtcaga cgaggttgcc gatcgtgtgc gggcgctgat tgatgaaaaa
     2881 aacctggaag cgggcatgaa gttgcccgct gagcgccaac tggcgatgca actcggcgta
     2941 tcacgtaatt cactacgcga ggcgctggca aaactagtga gcgaaggcgt gctgctcagt
     3001 cgacgcggcg gcgggacgtt tattcgctgg cgtcatgaca catggtcgga gcaaaacatc
     3061 gtccagccgc taaaaacgct gatggccgat gatccggatt acagtttcga tattctggaa
     3121 gcccgctacg ccattgaagc cagcaccgca tggcatgcgg caatgcgcgc cacacctggc
     3181 gacaaagaaa agattcagct ttgctttgaa gcaacgctaa gtgaagaccc ggatatcgcc
     3241 tcacaagcgg acgttcgttt tcatctggcg attgccgaag cctcacataa catcgtgctg
     3301 ctgcaaacca tgcgcggttt cttcgatgtc ctgcaatcct cagtgaagca tagccgtcag
     3361 cggatgtatc tggtgccacc ggttttttca caactgaccg aacaacatca ggctgtcatt
     3421 gacgccattt ttgctggtga tgccgacggg gcgcgtaaag caatgatggc gcaccttagt
     3481 tttgttcaca ccaccatgaa acgattcgat gaagatcagg ctcgccacgc acggattacc
     3541 cgcctgcccg gtgagcataa tgagcattcg agggagaaaa acgcatgatt atttccgcag
     3601 ccagcgatta tcgcgccgca gcgcaacgca ttctgccgcc gttcctgttc cactatatgg
     3661 atggtggtgc atattctgaa tacacgctgc gccgcaacgt ggaagatttg tcagaagtgg
     3721 cactgcgcca gcgtattctg aaaaacatgt ccgacttaag cctggaaacg acgctgttta
     3781 atgagaaatt gtcgatgccg gtagcactgg caccggtggg tttgtgtggc atgtatgcgc
     3841 gtcgtggcga agttcaggca gccaaagcgg cggacacgca tggcattccg tttactctct
     3901 cgacggtttc cgtttgcccg attgaagaag tcgcgccagc catcaagcgc ccaatgtggt
     3961 tccagcttta tgtactgcgc gatcgcggct ttatgcgtaa cgcgctggag cgagcaaaag
     4021 cagcgggttg ttcgacgctg gttttcaccg tggatatgcc gacaccgggc gcacgctacc
     4081 gtgatgcgca ttcaggtatg agcggcccaa atgcggcaat gcgccgctac ttgcaggcgg
     4141 tgacgcatcc gcaatgggcg tgggatgtgg gcctgaacgg tcgtccacat gatttaggta
     4201 atatctcagc ttatctcggc aaaccaaccg gactggaaga ttacatcggc tggctgggga
     4261 ataacttcga tccgtccatc tcatggaaag accttgagtg gatccgcgat ttctgggatg
     4321 gcccgatggt gatcaaaggg atcctcgatc cggaagatgc gcgcgatgca gtacgttttg
     4381 gtgctgatgg aattgtggtt tctaaccacg gtggccgcca gctggacggt gtactctctt
     4441 ccgctcgtgc gttgcccgct attgcagatg cggtgaaagg tgatatcgcc attctggcgg
     4501 atagcggaat tcgtaacggg cttgatgtcg tgcgtatgat tgcgctcggt gccgacaccg
     4561 tactgctggg tcgtgctttc ctgtatgcgc tggcaacagc gggccaggcg ggtgtagcta
     4621 acctgctaaa tctgatcgaa aaagagatga aagtggcgat gacgctgact ggcgcgaaat
     4681 cgatcagtga aattacgcaa gattcgctgg tgcaagggct gggtaaagag ttgcctgcgg
     4741 cactggctcc catggcgaaa gggaatgcgg catagtcgtt tgc
//
LOCUS       DAJVUP010000225         4728 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.225, whole genome shotgun sequence.
ACCESSION   DAJVUP010000225 DAJVUP010000000
VERSION     DAJVUP010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4728
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.225"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            80..1042
                     /gene="tauA"
                     /locus_tag="OQQ75_003982"
     CDS             80..1042
                     /gene="tauA"
                     /locus_tag="OQQ75_003982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1978126.1"
                     /translation="MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQAGNT
                     FAKESGASVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKL
                     GNSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKLGQVEIVNLQPPA
                     IIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHP
                     EVVKAFAKSAIDAQQPYIANPDAWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQ
                     QQTAELTGPVNKVIIDTAQFLKEQGKVPAVANDYSQYVTSRFVQ"
     gene            1055..1822
                     /gene="tauB"
                     /locus_tag="OQQ75_003983"
     CDS             1055..1822
                     /gene="tauB"
                     /locus_tag="OQQ75_003983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter ATP-binding subunit"
                     /protein_id="HCS1978127.1"
                     /translation="MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL
                     NLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEK
                     MQRLEIAHQVLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD
                     AFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFA
                     RRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS"
     gene            1819..2625
                     /gene="tauC"
                     /locus_tag="OQQ75_003984"
     CDS             1819..2625
                     /gene="tauC"
                     /locus_tag="OQQ75_003984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter permease TauC"
                     /protein_id="HCS1978128.1"
                     /translation="MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAAL
                     QLISPLFLPPQQVLAKLLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGI
                     AMGLSPTVRGILDPVIELYRPVSPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSA
                     LAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAEL
                     IAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTP"
     gene            2640..3491
                     /gene="tauD"
                     /locus_tag="OQQ75_003985"
     CDS             2640..3491
                     /gene="tauD"
                     /locus_tag="OQQ75_003985"
                     /EC_number="1.14.11.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine dioxygenase"
                     /protein_id="HCS1978129.1"
                     /translation="MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQV
                     VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDV
                     TFIETPPAGAILAAKELPSTGGDTLWTSGITAYEALSVPFRQLLSGLRAEHDFRKSFP
                     EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKES
                     EALLGFLFAHITKPEFQVRWRWQPNDIAIWDNCVTQHYANADYLPQRRIMHRVTILGD
                     KPFYRAG"
     gene            complement(3597..4571)
                     /gene="hemB"
                     /locus_tag="OQQ75_003986"
     CDS             complement(3597..4571)
                     /gene="hemB"
                     /locus_tag="OQQ75_003986"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HCS1978130.1"
                     /translation="MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDY
                     KAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARM
                     SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGAD
                     FIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKS
                     YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEY
                     AMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR"
BASE COUNT         1057 a         1216 c         1384 g         1071 t
ORIGIN      
        1 gcgataacga ctaattcttt taatgaatgt ttttattcct gaatactgct cccataacaa
       61 gactggggag cagacaatca tggcaatttc atcgcgtaac acacttcttg ccgcactggc
      121 attcatcgct tttcaggcac aggcggtgaa cgtcaccgtg gcgtatcaaa cctcagccga
      181 accggcgaaa gtggctcagg ccggcaacac ctttgctaaa gagagcgggg cgagcgtgga
      241 ctggcgtaag tttgacagcg gagccagcat cgtgcgggcg ctggcttctg gcgacgtgca
      301 aatcggcaac ctcggttcca gcccattagc ggttgcagcc agccaacagg tgccgattga
      361 agtcttcttg ctggcgtcaa aactgggtaa ctccgaagcg ctggtggtaa agaaaactat
      421 cagcaaaccc gaagatttga ttggcaaacg cattgccgta ccgtttatct ccaccaccca
      481 ctacagcctg ctggcggcgc tgaaacactg ggggattaaa ctagggcaag tggagattgt
      541 gaacctgcag ccgcccgcga ttatcgccgc atggcagcgg ggtgatattg atggtgctta
      601 tgtctgggca ccggcggtta acgccctgga aaaagacggc aaggtgttga ccgattctga
      661 acaggtcggg cagtggggtg cgccaacgct ggacgtctgg gtggtgcgca aagattttgc
      721 cgagaaacat cctgaggtcg tgaaagcgtt cgctaaaagc gccatcgatg ctcagcaacc
      781 gtacattgct aacccagacg cgtggctgaa acagccggaa aacatcagca aactggcgcg
      841 tttaagcggc gtgccggaag gtgacgttcc ggggctggtt aaggggaata cctatctgac
      901 gccgcagcaa caaacggcag aactgaccgg accggtgaac aaagtaatca tcgacaccgc
      961 gcagtttttg aaagagcagg gcaaggtccc ggctgtagcg aatgattaca gccagtacgt
     1021 tacctcgcgc ttcgtgcaat aaaaggaggc gcagatgctg caaatctctc atctctatgc
     1081 cgattatggc ggcaaaccgg cactggaaga tatcaacctg acgctggaaa gcggcgagct
     1141 actggtggtg ctggggccgt ccggctgcgg taaaaccacg ttgctgaatc tgattgccgg
     1201 ttttgtgcct tatcagcatg gcagcattca actggcgggt aagcgtattg agggaccggg
     1261 agcagagcgc ggggtggttt ttcagaatga agggctgcta ccgtggcgca atgtacagga
     1321 caacgtggcg ttcggcctgc aattggcagg tatagagaaa atgcagcgac tggaaatcgc
     1381 gcaccaggtg ctgaaaaaag tggggctgga aggcgcagaa aaacgctata tctggcagct
     1441 ttccggtggt caacgtcagc gggtggggat tgcccgcgcg ctggcggcga atccccagct
     1501 gttattactc gacgaaccgt ttggtgcgct ggacgccttc acccgcgacc agatgcaaac
     1561 tctgctgctg aaactctggc aggagacggg caagcaggtg ctgttgatta cccacgatat
     1621 agaagaagcg gtgtttatgg cgactgaact ggttctgctt tcatccggcc ctggccgtgt
     1681 gctggagcgg ctgccgctca actttgctcg ccgctttgtt gcgggagagt cgagccgcag
     1741 catcaagtcc gatccacaat tcatcgccat gcgcgaatat gttttaagcc gcgtatttga
     1801 gcaacgggag gcgttctcat gagtgtgctc attaatgaaa aactgcattc gcggcggctg
     1861 aaatggcgct ggccgctctc gcgtcaggtg accttaagca ttggcacgtt agcggtttta
     1921 ctcactgtat ggtggacggt ggcggcgctg caactgatta gcccgctgtt tttgccgccg
     1981 caacaagtac tggcaaaact gctcaccatt gccggaccgc agggatttat ggacgccacg
     2041 ctgtggcagc atctggcagc cagcctgacg cgcattgtgc tggcgctact cgcggcggtg
     2101 gtgatcggta ttccggtcgg gatcgccatg gggctaagcc cgacggtgcg cggcattctg
     2161 gatccggtaa tcgaacttta tcgtccggtg tcgccgctgg cttatttgcc gctgatggtg
     2221 atctggtttg gtattggtga aacctcgaag atcttactga tctatttagc gatttttgca
     2281 ccggtggcga tgtcggcgct ggcgggggtg aaaagcgcgc agcaggttcg cattcgtgcc
     2341 gcccagtcgc tgggtgccag ccgtgcgcag gtgctgtggt ttgtcatttt gcccggcgcg
     2401 ctgccggaaa tcctcaccgg attacgcatt ggtctgggtg tgggctggtc tacgctggta
     2461 gcggcggagc tgattgccgc gacgcgcggt ttaggattta tggttcagtc agcgggtgaa
     2521 tttctcgcga ctgacgtggt gctggcggga atcgcggtga ttgcgattat cgcctttctt
     2581 ttagaactgg gtttgcgcgc gttacagcgc cgtctgacgc cctagcatgg agaagtacaa
     2641 tgagtgaacg tctgagcatt accccgctgg ggccgtatat cggcgcacaa atttcgggtg
     2701 ccgacctgac gcgcccgtta agcgataatc agtttgaaca gctttaccat gcggtgctgc
     2761 gccatcaggt ggtgtttctg cgcgatcaag ccattacgcc gcagcagcaa cgcgcgctgg
     2821 cccagcgttt tggcgaactg catattcacc ctgtttaccc tcatgccgaa ggggttgacg
     2881 agatcatcgt gctggatacc cataacgata atccgccaga taacgacaac tggcataccg
     2941 atgtgacatt tattgaaacg ccacccgcag gggcgattct ggcagctaaa gaattacctt
     3001 cgaccggcgg tgatacgctc tggaccagcg gtattacggc ctatgaggcg ctctctgttc
     3061 ccttccgcca gctgctgagc gggctgcgtg cggagcatga tttccgtaaa tcgttcccgg
     3121 aatacaaata ccgcaaaacc gaggaggaac atcaacgctg gcgcgaggcg gtcgcgaaaa
     3181 atcctccgtt gctacatccg gtggtgcgaa cgcatccggt gagcggtaaa caggcgctgt
     3241 ttgtgaatga aggctttact acgcgaattg tcgatgtcag cgagaaagag agcgaagcct
     3301 tgttaggctt tttattcgcc catatcacta aaccggagtt tcaggtgcgt tggcgctggc
     3361 aaccgaatga tattgcgatt tgggataact gcgtgactca gcactatgcc aatgccgatt
     3421 acctgccaca gcggcggatt atgcatcggg tgacgattct tggggataaa ccgttttatc
     3481 gggcggggtg atacgagtgc ggacggttcc ctcgccccct tggggagagg gttagggtga
     3541 gggggcgttc accgtacttt caacaggtta actccccctt tctgagagga aaaaaattaa
     3601 cgcagaatct tcttctcagc caaatccagc gcaaagtagc tgaaaatcag atccgcaccc
     3661 gcacgcttaa ttgaacctaa gctttcgagc acgactttct cttcatctat agcacccgcc
     3721 agcgcggcga acttaatcat cgcgtactca ccgctcacct gatatgcgcc aatcggcaat
     3781 tcagtacgtt cacgcagctc acgcacgatg tcgaggtacg ctccagcagg tttaaccatc
     3841 aggcagtctg cgccctgggc ttcatccagc agtgactcac gaatcgcctc gcgacggttc
     3901 atagggttca tctgatagct tttgcggtcg ccttttaatg cgcttccggc agcttcacgg
     3961 aacgggccat aaaaggaaga ggcgaacttg gtcgaatacg acataatcgc cgtatcttta
     4021 aagcctgcag cgtccagcgc ctgacgaatc gcctgtacct ggccgtccat cgcggcggaa
     4081 ggggcgatga agtctgcgcc tgcagcagct gcaaccacgg cttgcttgcc taaattttcc
     4141 agagtcgcgt cgttgtcgac gccatgctcg cacagcacac cgcagtgacc gtgagaagtg
     4201 tattcacaga aacaagtgtc tgacatgacg atcatttctg gcacagtctg cttgcagatg
     4261 cgcgacatac gcgccaccag tccatcttcc cgccaggcgt cgctgccggt ttcatcggta
     4321 tggtgagaga tgccgaaagt catcacggaa cgaataccgg cgttggcgat gcgttcaatt
     4381 tcgcgtgcca gatgtttctc tggaatgcgc atcacgcctg gcatggcttc aacggctttg
     4441 tagtcgtcaa tttcttcttc aacaaagatc ggcaacacca ggtcgttaag gctaagtgtt
     4501 gtctcttcaa acatagcgcg cagcgcagga gatttgcgca ggcgacgagg gcgttggatt
     4561 aagtctgtca tggtctgcct gatgtttgtg gaattaaggt gcacagtata cctgaagcgg
     4621 ggcaggagtg ttttacgaaa gttgtcgtga tgttgacaag aagagaatga aagagagacc
     4681 aggacatctt tgtaatagaa atagcaataa gttcatattc actgaaaa
//
LOCUS       DAJVUP010000226         4682 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.227, whole genome shotgun sequence.
ACCESSION   DAJVUP010000226 DAJVUP010000000
VERSION     DAJVUP010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4682
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.227"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            350..712
                     /gene="queD"
                     /locus_tag="OQQ75_003987"
     CDS             350..712
                     /gene="queD"
                     /locus_tag="OQQ75_003987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708563.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HCS1978131.1"
                     /translation="MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV
                     DPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLL
                     SAVMVKETCTAGCIYRGE"
     gene            790..2058
                     /locus_tag="OQQ75_003988"
     CDS             790..2058
                     /locus_tag="OQQ75_003988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1978132.1"
                     /translation="MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNL
                     SGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRA
                     RFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
                     AERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGA
                     FLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVP
                     EGGLHSMPVQYAGNGWQLVGDALRSCVNTGISVRGMGMALTGAQAAQTLISACQHREP
                     QNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPV
                     PPLRQLFWRHLRRHGLWHLAGDVIRSLRCL"
     gene            2049..2309
                     /locus_tag="OQQ75_003989"
     CDS             2049..2309
                     /locus_tag="OQQ75_003989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS1978133.1"
                     /translation="MSVAHNLWRVADAPHIVPADSVERQMVQWLINACPAGLFSLTPE
                     GDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG"
     gene            2326..2901
                     /locus_tag="OQQ75_003990"
     CDS             2326..2901
                     /locus_tag="OQQ75_003990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HCS1978134.1"
                     /translation="MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTIS
                     NIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGF
                     FCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVC
                     DEEDACNAINAGVVALSTTNTGVWTLAKKLL"
     gene            complement(3049..3909)
                     /locus_tag="OQQ75_003991"
     CDS             complement(3049..3909)
                     /locus_tag="OQQ75_003991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HCS1978135.1"
                     /translation="MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQV
                     LDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHW
                     GNALTATLQTEKRPLCLSLARQAGAAKNATLPSGIQQLNIVPGALPDWLVSTEDLKNV
                     TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISG
                     HLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEA
                     LVTNIHADCQ"
     gene            complement(3906..>4682)
                     /locus_tag="OQQ75_003992"
     CDS             complement(3906..>4682)
                     /locus_tag="OQQ75_003992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HCS1978136.1"
                     /translation="NILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQ
                     AAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEF
                     VARHIAEWQHQNPLDLIITGSQSSEGQNGQTPFLLAEMLGWTCFTQVERFTLDALFIT
                     LEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAM
                     QCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP"
BASE COUNT         1075 a         1254 c         1187 g         1166 t
ORIGIN      
        1 gctaaaattt ctttttttca ttggagcacc tgtgttgttc tgaggtgagc atatcacctc
       61 tgttcaggtg gccaaattca gtgtgccact tcaaagaaga taaggttaac ggggtgaacg
      121 gtgtggatta aagacgggat agcgataact aataaccaaa tcgactaacc tgttttagca
      181 atagtcttta acaacaaaat agattaacca acccaatgaa aaacaaatga atttagccaa
      241 tcattaagat aaatcagcga ttttgcgcaa caaagtcgtt ttagataatg cgaaaaaaca
      301 gcctttccgg tactctacgg cggttttatc gtcctgtaga gaaattatga tgtccaccac
      361 gttatttaaa gatttcacct tcgaagccgc tcaccgctta ccacacgtcc cggaagggca
      421 taaatgtggt cgcctgcacg ggcattcctt tatggtgcga ctggaaatta ccggggaagt
      481 cgatccgcat acgggctgga ttatcgattt cgctgaacta aaagcggcgt ttaagccaac
      541 ttatgagcgc ctcgatcacc attatctcaa tgatattcca ggtctggaaa acccaactag
      601 cgaagtttta gcaaaatgga tttgggatca ggttaaaccc gttgtgccgc tgttaagtgc
      661 ggtgatggta aaagaaacct gcaccgctgg ttgtatctat cgcggcgaat gataagagtg
      721 tgtcggcggt caatttccct taagtaacgc tatgttaggg tattgtgttc aggatatctg
      781 gggcatgaca tggaagacga ctgcgacatt attattattg gtgccggtat tgcaggcacc
      841 gcttgcgcgt tacgctgcgc gcgagcgggt ttatccgttt tgttactgga acgcgctgaa
      901 atccccggca gcaaaaatct ttccggcgga cggttatata cccatgcact cgcggaactc
      961 ctccctcagt ttcatctgac cgcgcctctt gaacgacgca tcactcacga aagcctttcc
     1021 ctgttaacgc ccgatggcgt aacgacgttt tccagcttac agcccggcgg tgaatcctgg
     1081 agtgtattac gtgcacggtt cgatccgtgg ctggttgccg aagccgaaaa agaaggtgtc
     1141 gaatgtatcc ccggagcgac ggtggatgca ctgtatgaag aaaacggcag agtctgtggc
     1201 gttatttgtg gtgacgatat tctccgcgcc cgttatgtgg tgctggcaga aggtgccaac
     1261 agcgtcctgg ctgaacgtca cgggttagtg actcgtcctg ctggcgaagc gatggcgttg
     1321 gggatcaaag aagtgctgtc gctggaaaca tccgctattg aagaacgttt tcatctggag
     1381 aataacgaag gcgcagcgtt gctgttcagc ggcggaatct gtgatgactt acccggcggc
     1441 gcatttcttt atactaatca acaaacgctc tcgttaggga ttgtttgccc gctctcttcc
     1501 cttacgcaaa gtcgtgttcc ggcaagcgag ctgctgactc gctttaaagc gcatccggca
     1561 gtgcgcccgc ttatcaaaaa cacggaatca ctggagtatg gtgcgcatct ggtgccagaa
     1621 ggtggcttgc acagtatgcc ggtgcaatac gccggtaacg gctggcagct ggtgggcgat
     1681 gcgttgcgca gttgcgtcaa taccggaatt tccgtgcgcg gcatgggtat ggcgctgact
     1741 ggcgcgcagg cggcacaaac gctgataagc gcctgccagc accgcgagcc gcaaaatctg
     1801 tttgcgcttt atcatcacaa cgtagagcgc agcctgctat gggatgttct acaacgttat
     1861 cagcatgttc cggcgctttt gcaacgccct ggctggtatc gggcgtggcc tgcgttaatg
     1921 caggatattt cccgcgattt atgggatcag ggtgataaac ctgttccacc gctgcgccag
     1981 ttattctggc gtcatttacg tcgtcatggc ctgtggcatc tggcgggcga tgttatcagg
     2041 agtctgcgat gtctgtagcc cataatctct ggcgcgttgc tgatgcgccg cacattgttc
     2101 cggctgactc cgttgagcgt cagatggtac aatggttgat taacgcctgt ccggcaggtc
     2161 ttttttcgct cacaccggaa ggtgacttac gcgttgatta tcacggctgc ctggagtgtg
     2221 gcacctgccg tttgctgtgc gacgaatcca cactacaaca gtggcgctat ccgccttccg
     2281 gattcggcat cacctaccgc tttggataaa taataaggat aatttatgcc cctcttacac
     2341 ctgctccgcc agaatccggt gattgctgcc gttaaagata atgccagcct gcaactggca
     2401 atcgactctg aatgccagtt tatttccgtg ttgtacggca atatctgcac catcagtaat
     2461 atcgttaaaa agattaagaa cgccgggaaa tatgctttta ttcatgttga tttgctggaa
     2521 ggcgcgtcaa ataaagaagt cgtgattcag tttttgaaac tggtgaccga ggcggacggc
     2581 attatcagta ccaaagcctc aatgttgaaa gcggcaagag cggaaggttt tttctgtatt
     2641 catcgcctgt ttattgttga ttcaatttcg tttcacaaca ttgataagca agttgcgcaa
     2701 tcgaatccgg attgtattga gatcctgcca ggctgtatgc ccaaagtgct gggctgggtg
     2761 acagagaaaa tccgccaacc gctgattgcc ggtgggctgg tgtgcgatga agaagatgcg
     2821 tgtaatgcga ttaacgcggg tgtcgtggcg ctttccacca cgaataccgg ggtctggacg
     2881 ttagcgaaaa aattactttg acgggataat cgtaaccaat tgaatttggt ttgatttgta
     2941 ggccgcacgc cacatccgac attcagcgcc tgatgcgacg cttgacgcgt cttatcaggc
     3001 ctacaagtcc ccaggccaga accgtaggca ggatcatccg gcaacacatt attggcaatc
     3061 tgcgtgaatg tttgtcacca gtgcctccag caccactttc cagtcatcaa ccacgccaac
     3121 atctgcctgt gaaaataccg cagcgctggc gtcatgatta atcgccacca caaacttgct
     3181 attgcgtacg cccgccatta acgctgctgc gccggaagcg ccaacaacaa tacacacctc
     3241 aggtgccagc aaatgtccgg aaataccaat cactttttca gcatcaacgc caccgttcat
     3301 cactcgcgcc cgactgtagc ccacttcggc tcccagcttt tctgccagca tagcgatttc
     3361 ctggttatct gcctctccgc cctgccccac caccagcacc cgtctggcct cagctaatgg
     3421 gtcgcgagta acatttttca gatcctctgt gctaaccagc cagtcgggaa gcgcacccgg
     3481 gacaatgttc agttgttgta ttccagaggg caacgtggcg tttttcgctg ctcccgcctg
     3541 acgcgccaga gaaaggcata gcgggcgttt ttctgtttgc agcgtcgccg ttagcgcatt
     3601 tccccagtgg gatttgcgca cgcttacggt tggaatatct aacgaagtca cctggcagat
     3661 gcttgcacca tgtaaacgcc aggccagccg ggtcgacagt tcatcgccaa acgttcccgg
     3721 cggaaagaga acaacgtccg caggcgttcg ctgccactgt tccaccaacg catccagcac
     3781 ctgttccgcc actacaggct gaggttcaat ctgccagtgc gccagggtac aaccactgaa
     3841 atcctgcgcc gccagccagc ttgctattgc ggcattctcc tgatttattg tcacaattgc
     3901 gatattcatg gctgcatcct ttggcgtaaa tagtcctgcc atagcttttg agctttttct
     3961 gctaccgttt gcccatcaat cagcgtcgct ccgcgtcgtt gctctgctct tgccagttgc
     4021 agacactgca tcgctggcat ttcggcagca acagttttac ggataatttc tgctttcccc
     4081 gcagccattc gctggcgcat tcccggtact ggcaaggcca cttcaccgca ctgacgcacg
     4141 gcaatcaccg caggcaagcg aacccggcaa caacgcaacc catgttcagt acgctgttcg
     4201 agggtgataa acagcgcgtc gagagtgaaa cgctccacct gggtgaagca ggtccagccc
     4261 agcatttccg ccagcaaaaa tggcgtttgc ccattctgcc cttcgctgct ttggctgccg
     4321 gtaattatca gatccagcgg attctgatgc tgccattcgg caatatggcg agcgacaaat
     4381 tccggcgcaa agcgcagatc tgccgccgtc tccagcaata cagcttcctc aaacccaaga
     4441 gccatgagat agcgcagcca gtgcaatgcc cgttcatccc ccatgctcaa cgcggttaaa
     4501 gacatcggcg taccgttttt tctctgcgcc aacagcagcg cggcagcggc ctgttcatca
     4561 gcaccgagta aacttcgcag tagcgaaata tccggtccgc ttttaccctg agccgccgcc
     4621 tgccactctt tttccgccag cattccggca tccggttcgg ctttaaacgc taacagaatg
     4681 tt
//
LOCUS       DAJVUP010000227         4667 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.228, whole genome shotgun sequence.
ACCESSION   DAJVUP010000227 DAJVUP010000000
VERSION     DAJVUP010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4667
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.228"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..755)
                     /locus_tag="OQQ75_003993"
     CDS             complement(<1..755)
                     /locus_tag="OQQ75_003993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSS-motif domain-containing protein"
                     /protein_id="HCS1978137.1"
                     /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ
                     RVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLV
                     QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN
                     AGVMEMINIDLLTAMLLEPQLQQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS
                     SQRFPFTINVNGPGATALAWHYLPTQLPLAVLL"
     gene            complement(886..2250)
                     /gene="sdaA"
                     /locus_tag="OQQ75_003994"
     CDS             complement(886..2250)
                     /gene="sdaA"
                     /locus_tag="OQQ75_003994"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1978138.1"
                     /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR
                     VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGR
                     HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD
                     AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA
                     CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK
                     VQCD"
     gene            complement(2434..3012)
                     /locus_tag="OQQ75_003995"
     CDS             complement(2434..3012)
                     /locus_tag="OQQ75_003995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HCS1978139.1"
                     /translation="MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQP
                     GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASVIAAALREAEEEVAIPPSAVEVIGVLP
                     PVDSVTGYQVTPVIGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS
                     HRVWLSWYEQYFVWGMTAGIIRELALQIGVKP"
     gene            complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="OQQ75_003996"
     CDS             complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="OQQ75_003996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 1"
                     /protein_id="HCS1978140.1"
                     /translation="MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS
                     RFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF
                     QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV
                     NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRF
                     HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT
                     LPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF
                     PAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG
                     SIGYLSFCGNMDTSITIRTLTAINGQIYCSAGGGIVADSQEEAEYQETFDKVTKILRQ
                     LEK"
     gene            4451..4630
                     /locus_tag="OQQ75_003997"
     CDS             4451..4630
                     /locus_tag="OQQ75_003997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HCS1978141.1"
                     /translation="MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN
                     HSGERIVARFEDEDE"
BASE COUNT         1171 a         1200 c         1213 g         1083 t
ORIGIN      
        1 cttagcagca ccgccagcgg taattgtgtt ggaagatagt gccatgccag cgccgtagcc
       61 cccggaccat taacgttaat ggtaaaagga aagcgttgcg aagaaacctg atagttttca
      121 ttgtcttcag gttgcggaag ggaatctacc agcccattac catagagcaa atgccgtttg
      181 tccaccgtca ggctggcgct actgatttgc tgcagttgtg gttcaaggag cattgccgtc
      241 agtaagtcga tgttaatcat ctccatgacc ccagcattgc tactgcccgc tgcaggcgtc
      301 cattgaatca aaaccggact gcctttaatc agggcacggt cgatcgtcag gcgtaaaagt
      361 ggttgcggtg caggaagttc agccagaatg tccacgacgg gcacattgcg ataaccaaaa
      421 atgctggagc aatagagtgt gccgtcttgc accaggccaa tggatcgcac agtttggagt
      481 tttgccgcct gtttacgtaa tggcaaatgg gcgacagagc agggcagacc aatcagcgga
      541 agcaagactt cgctacctgc ctgtagggga agcagtactt tatctaattc ctctacagcg
      601 tgattggcga attgtactac ccgttgttga tttaagttac gctgtgaaat aaatcgcacg
      661 ctcagggtcg aagcgagcgt aacgagtgcg caaatcgtac aaacaatcat tcgattacgt
      721 cgataggttt taatgatccg ttgtgctttt tgcatgcggg ccaccctgta agcgtatggc
      781 gacaaacgcc tgacgcaaca gtggatgtgt agtggggaat attacagcag acgagaaagc
      841 gggtataaat tcgcccatcc gttgcagatg ggcgagtaag aagtattagt cacactggac
      901 tttgattgcc agaccaccgc gtgaggtttc gcggtatttg gcgttcatgt ccttaccggt
      961 ttcgtacatc gtttcgatga ccttatccag cgagacgcgc ggtgcactgg tgcggcgcag
     1021 agccatccgt gcggcgttaa tcgccttcac agaggcaatg gcattacgct caatgcacgg
     1081 cacctgaacc tgccctgcaa ccgggtcgca ggttaaacca aggttgtgtt ccatgccaat
     1141 ttccgccgcc acgcaaacct gttccgggct accgcccagc agttctgcaa gacccgcagc
     1201 agccattgaa caggcaacac ccacttcgcc ctggcaacca acttccgcac cggaaataga
     1261 ggcgttcatt ttatacaatg caccaatcgc gcccgctgcc ataaagtaac gggtatagat
     1321 gtccgggctg accgattcaa taaagtggtc atagtaagcc agcactgccg gaacgatacc
     1381 gcaggcaccg ttggttggcg cagttaccac acgaccaccg gcggcgtttt cttcgttaac
     1441 tgccagcgca aacatgttta cccagtcaat gacattcatc ggatcgttag acagtttatc
     1501 gctggaaacc agcatccggc gcagggcaga cgcacgacgt ggcacgcgca gcgggcctgg
     1561 cagtacacct tcggtgttca tcccgcgatc gatacatgcc tgcatggttt gccagacatg
     1621 cgcgaaatac tcgtcgatct ctttcttgct gtgcagcgcc agttcgttct gcatagcgag
     1681 accagacagc gaatagccgg tttcattaca gtacgcgagc agttcggtgg cagatttgaa
     1741 cggatacggc acgctcactt cgttggcagc atcctgacca aagtgttctt catcgacgat
     1801 aaaaccgccg ccgatggaat aataagtttt gctgtagacg acttcatcgc cgttataggc
     1861 gtggatttgc ataccgtttt catgcagcgg caggttgccg ttatgaaaac gcatcccgtt
     1921 gtcgcgcggg aaatccactt catgccgtcc ctgtgccagc agcagacgtt cgcgctcttc
     1981 tacgtcgcga ataaaaccgg gaatactgtc gatatccacg gtggcaggtt cgttacctgc
     2041 aagacccata ataatggcga tatcggtgtg gtggccttta cccgtcagcg acagtgaacc
     2101 ataaacgtcc acggcaacgc gagtaacgct atccagtaag cctttttcga ccagatcatc
     2161 gacgaactgt ttacccgcct tcataggccc tacggtatgg gaagatgagg gaccaatccc
     2221 caccttaaac atgtcgaata gactaatcac gataatactc ctgacaaggt gactggactt
     2281 ccagtaacga actaataaca gcgcatagtg taagagggaa cgcggcgact ggcttaacta
     2341 ttcacatgaa ttaaactaat caaaaaccgc gatttaacta atattgcgat gattgtctca
     2401 agtagtgttt tgtagatgta aagataagta tagtcagggt ttcacaccaa tttgcagcgc
     2461 cagctcacga attatgcctg cggtcattcc ccatacaaaa tactgttcgt accaggacag
     2521 ccatacccga tgtgaatcgc cacggcggta gatatctaaa gggtgataac gacccagatg
     2581 taatgcctgg gcgagcggca tttcaaacac cgccgagact tcatcttcac tggcgcgata
     2641 cggcagatcg ggcgggataa tgccgatcac tggggttacc tgatagccag ttacgctatc
     2701 gacgggcggc agcacgccga taacttcaac ggcggaaggc ggtatagcga cctcttcttc
     2761 agcttcgcgc agcgcggcgg cgataactga tgcgtccgtg tcatcgactg cacctccagg
     2821 gaatgccact tgtccagcgt gtttacgcag atgaattgaa cgctgagtca gcaacaaccc
     2881 cggttgcggt cgacggacga tggggattaa cacggcagcc tgacgatgat ttagggtttc
     2941 ccggttaatt tgcgggcgca aaagttgaaa gcgagataaa aaatcatcaa gcgtcaggct
     3001 acggtattcc acgtcttact tctccagttg gcgtaatatc ttagtaactt tatcaaaagt
     3061 ttcctgatat tccgcttctt cctggctatc ggcgacaatt ccaccgcccg cagagcagta
     3121 tatttgtccg ttaatggcag tcagcgtgcg gatagtaatg ctggtatcca tgttgccgca
     3181 aaagctcaaa tagccaatgc tgccgcacca ggcattacgt cgctgcggtt ccagttcgtc
     3241 gataatttcc atagcccgta ctttcggagc cccggttatt gagccaccag gaaaagctgc
     3301 gcgcagcaga tcgctggcgt gtaactgttc tggtagtcgc gccgttatag tgctgaccag
     3361 atgatgcacg gcagggaagg gttccaccac gaagagctct ggtactttta ccgaaccggc
     3421 tacggcaaca cgaccgatat cattacgcat taaatcgaca atcatcagat tttcggcacg
     3481 atctttcgct gagttcgcca gtttttctgc ttgtttgcta tcttcctgag gatcgggcag
     3541 gcgtggtagc gtgcctttaa tcgggcgggt ctggatttca ctattatcac aaagaataaa
     3601 ccgctctggc gaaaggctta aaattgcacc ctgttcaaga cgtaaaaaag cgctaaatgg
     3661 cgcgcggttg gcctgattaa gctgaaggaa tgcctgccat tcatcgccag aataggtcgc
     3721 atgaaaacgc tgggcgagat tcacctgata gcaatcaccg ctgtgcagat attcctgtac
     3781 ctggcgaaat ttttcgccgt actgctcgcg ggtcatattg gattgccagt cggaagtgag
     3841 cgtgaaatct tcctgcggcg agaattgctg gctttccagc caggcccgac gggcattgac
     3901 atcattatga ctcagcaaag aaactgtatg acgctggtgg tcgacaatga gcgcccaatc
     3961 gtagataccc actgccatat ccggcagaac gatatcttgt tccgcaattt ctggcagtga
     4021 ctcaaaacgg cggcccagat cgtagccaaa caaccccagt gcgccgccct gaaatggcaa
     4081 atcttcgtta tgcgttgggc gaatgtctgc gcgatccagc acctgctgga gcacctgtag
     4141 cgggtcatca gtggtcgttg tgcgtttttc gctttcacta acaacggttt ctttaccgaa
     4201 agtggttaaa gtgcaaatcg gctcggcgac cacaatatca aagcggctat acggatgatc
     4261 ggcatagccg gagtgtaaaa gcatcgccca cggcaggtgg cttaagcggg agaaataaaa
     4321 ttcagcggcg tcctgacgcc agggtaaagt aatcacagcg ggagataacg tcttcatcag
     4381 tcctgactct actggctatg tgccgggtag catgaaataa ttagcgccaa caatttagca
     4441 ggagttaaca atgtttgcag gtttaccttc actcacccat gaacagcagc aaaaagctgt
     4501 cgagcggatc caggaactga tggcacaagg gatgagcagc ggccaggcaa tcgcgctggt
     4561 ggcagaagag ctgcgtgcca accactccgg cgagcgaatc gtggcgcgtt ttgaggatga
     4621 agacgagtaa cacactaatc cgtatcgatt tcgttataga agccgat
//
LOCUS       DAJVUP010000228         4514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.229, whole genome shotgun sequence.
ACCESSION   DAJVUP010000228 DAJVUP010000000
VERSION     DAJVUP010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.229"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(559..864)
                     /locus_tag="OQQ75_003998"
     CDS             complement(559..864)
                     /locus_tag="OQQ75_003998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008325193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978142.1"
                     /translation="MGSKIAGVVFLYFAVWGMASVIELQYWRNADTYPVWLTKHLRIS
                     PENNDKSLIRIEMETFDKVCGDKRGLLAVTQKQNGMFMRCDDSPGFFSWFSGVYKVN"
     gene            complement(918..1169)
                     /locus_tag="OQQ75_003999"
     CDS             complement(918..1169)
                     /locus_tag="OQQ75_003999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004182043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HCS1978143.1"
                     /translation="MTNIILCDVTASVSELKNDPVATASARGGYPVEIIDRNRPVFYC
                     VPAALYEQMLDELDEKDLVQTITERQNQPLREVDLNQYL"
     gene            complement(1248..2519)
                     /locus_tag="OQQ75_004000"
     CDS             complement(1248..2519)
                     /locus_tag="OQQ75_004000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HCS1978144.1"
                     /translation="MFALADVNSFYASCEKVFRPDLRGKPVVVLSNNDGCVIARSAEA
                     KRLGIKMGTPWFQLKEAQFPEKLYVFSSNYELYASLSNRVVALLEELSPRVEQYSIDE
                     CFLDARGISHCMDLEDFGRQLRGHVLSGTGLTIGVGFGATKTLAKSAQWASKEWPQFS
                     GVLALSPENPRRTAKLLSLQPVEEIWGVGNRIAKKLHVMGITTALQLSLTNPTFIRKN
                     FNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGQRITTYGEMRQAVCQYAERAA
                     EKLRGERQYCRHISTFIKTSPFAVNEPYYGNVATEKLNTPTRDTRDIIAAAVRSLDRI
                     WLDGHRYAKAGIMLNDFSPNGVAQLNLFDDVQPRPHSDALMKVLDGINHSGLGKVWFA
                     GRGIAPDWQMKREMLSPAYTTRWKELPVARF"
     gene            complement(2519..2944)
                     /gene="umuD"
                     /locus_tag="OQQ75_004001"
     CDS             complement(2519..2944)
                     /gene="umuD"
                     /locus_tag="OQQ75_004001"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS1978145.1"
                     /translation="MKFIPAVSEASIVKIPLFTERCPAGFPSPAANYTESELDLNEYC
                     IHRRHSTYFVRAIGNSMTDIGLYSGDLMVVDKAEQPRHGDIVIAEIEGEFTVKRLLLT
                     PRPALQAMNPDFPSLYPDPETLQIFGVVTAFIHKTRRAD"
     gene            3045..4265
                     /locus_tag="OQQ75_004002"
                     /pseudo
     CDS             3045..4265
                     /locus_tag="OQQ75_004002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3-like element ISKox3 family transposase"
BASE COUNT         1065 a         1199 c         1191 g         1059 t
ORIGIN      
        1 ctgggaccac ggtgccacct gtatcgccgg tcaggttatc tgcctgggac cacggtccca
       61 cctgcatcgt cggcacatta ttagttaggg acaacggttc aatcaatgcc tgtcacgaac
      121 aggtattggc ttgtcgccag caacccgttg agcggagtaa tcacgcagca ggacggctgt
      181 tacaggcgat ggtgaaagct ctgttgggat ctgaacgaag catgttgagt gaaatttgca
      241 aaatttcgca gagtatgcgg cttcatcttt aaatttccgc cagcattttt aaagccagct
      301 accgacgctg cgcgttggcc ggcccttcgt ccggcgggta accagtaccg gccgatctta
      361 cgaccctgga tgaacatcat cccgtcagca gcgtctccac tgtgatgtcg tttttcacac
      421 tgtccgatca caaaatagaa cgggcaggga caacatatgg taggaaaagc agctgccaga
      481 gacacaatat attgattacc cacagtaacg ggggataacc atgtgggtaa catattgaaa
      541 gtgcaacacg ttatctgatt aattgacttt gtaaacgccg ctgaaccatg aaaaaaaacc
      601 gggggaatca tcacagcgca taaacatacc gttttgtttt tgggtgacgg caaggaggcc
      661 ccttttatca ccacatacct tgtcaaaggt ttccatttct atccttatca ggctcttgtc
      721 gttattttca ggagagatcc ggagatgttt tgtcagccag acaggatagg tatcagcgtt
      781 acgccagtac tgcaattcaa tcactgaagc cattccccag acagcgaagt ataagaaaac
      841 cacacctgcg attttgctac ccatattgtt ccttaacatt ggcttaatac attccttgct
      901 cctcgcaccg gagcacatca cagatactga ttgagatcca cttcacgcag cggctggttt
      961 tgacgttctg ttatcgtttg caccaggtct ttttcgtcca gctcatcgag catttgttca
     1021 tacaaagccg cgggcacaca ataaaaaaca gggcggttac ggtcaattat ctcgaccggg
     1081 tagccgccgc gggcactggc ggtggccacc ggatcgtttt taagttcgct gacgctggca
     1141 gtcacatcac acagaatgat atttgtcatg gttcccccct gagacaagtc acctgtatga
     1201 tcggtaaagt aagctctggc ggcaagtccc ttctgtcatt tcaacggtca gaaacgggca
     1261 accggcagct ccttccagcg tgtggtatat gccggtgaca gcatctcccg tttcatctgc
     1321 cagtccggcg caataccccg tccggcaaac cagactttcc cgagtccgga atgattaatg
     1381 ccgtcgagta ccttcatcag cgcatcgctg tgcggccgtg gctgcacgtc atcgaacaga
     1441 ttcagctgcg cgacgccgtt cggactgaaa tcattgagca ttatccccgc ttttgcgtag
     1501 cggtggccat cgagccatat cctgtccaga gacctgaccg ctgccgcgat aatgtcccgg
     1561 gtgtcacggg taggggtgtt cagtttttcc gtggccacgt taccgtaata cggctcatta
     1621 accgcaaaag gggatgtctt gatgaaggtg ctgatatgcc ggcagtactg tcgctcaccg
     1681 cgcaactttt ccgccgcgcg ctcggcatac tggcagacgg cctggcgcat ttctccgtag
     1741 gtggtgatcc gctgcccgaa gctgcgactg cagacaatct gctgtttcgg cggcggcgct
     1801 tcctccagcg aaatgcaact ctcgccgttc agctcacgta ccgtgcgctc cagcactacg
     1861 ttgaagtttt tccggataaa tgtagggttc gtcagcgaca gctgcagggc ggtggtgatc
     1921 cccataacgt gcagcttttt cgctatccgg ttccccacgc cccagatttc ttccaccggc
     1981 tgcaggctga gtaattttgc cgttctgcgt ggattttcgg gcgacagcgc cagcacccca
     2041 ctgaattgtg gccattcctt tgacgcccac tgcgccgatt tggccagtgt ttttgtggcg
     2101 ccgaagccga caccgatcgt cagtccggtt ccactgagaa catgcccacg cagctgcctg
     2161 ccaaaatcct ccagatccat acagtggcta attccccggg catccaggaa acattcgtca
     2221 attgagtatt gttcgacgcg gggcgacagc tcttccagca gggcgaccac acggttactc
     2281 aggctcgcgt agagctcgta gttgctggaa aaaacgtaca gtttttcagg aaactgcgcc
     2341 tctttgagct ggaaccaggg ggttcccatc tttataccca gccgtttggc ttcagcactc
     2401 cgggcaataa cgcagccatc gttgttactg agaacgacga caggtttgcc gcgcaaatcc
     2461 ggcctgaaaa ccttctcgca actggcgtag aaggagttga cgtctgccag ggcgaacatc
     2521 agtctgccct ccgggtttta tgaatgaagg ccgtcaccac gccgaaaatt tgcagagttt
     2581 ccggatccgg gtacagggaa gggaagtccg ggttcatcgc ctgcagggct ggccgcggcg
     2641 tcagaagcag gcgttttacc gtaaattcac cctcaatttc cgcgataaca atatccccgt
     2701 gccgcggctg ttctgcttta tccacgacca tcagatcgcc ggaatagagg ccaatatcag
     2761 tcattgagtt gccaatcgct ctgacaaaat aggtggagtg gcgccggtga atgcagtact
     2821 cattcagatc cagttcagac tcagtatagt ttgctgccgg tgacggaaaa cccgcagggc
     2881 atcgctctgt gaacaaagga atttttacta tgctggcttc tgatactgca ggaatgaact
     2941 tcatcgtttt ttccctcgct taaaactgta tatgcatggg tcttcccttg ttgtggtggc
     3001 tgaaggcatg ataatggtgt atttaatcgc cagaggtcac cgccatggac gaaaagtccc
     3061 tctacgctca tattctcaac ctgtccgatc cgtggcaggt aaagtccctt tctctcgatg
     3121 aaaatgccgg ttctgttact gtcactattg agatcgctga aaacacccgg ctagcctgtc
     3181 cgacctgcgg taaatcctgt tctgttcacg atcaccgtca tcgtaaatgg cgccatcttg
     3241 atacctgcca gttcaccact attgttgaag ccgatgttcc acgaattatg tgtccggagc
     3301 atggctgcct gacgttgcct gttccgtggg ctggccccgg aagccggtat acgttgctat
     3361 tcgaatcgtt cgttctctca tggctgaaaa tcagcaccgt tgatgctgtc aggaagcaac
     3421 ttaagctcag ttggaatgcg gttgacggca ttatgacccg ggcagttaag cgaggtcttg
     3481 cccggataaa aaagccatta tccgcccgtc atatgaatgt ggatgaggtc gcctttaaaa
     3541 aaggacatcg ttacataacg gtgatctccg atcgcgatgg tcgggcgctg gccttaacgg
     3601 atgatcgcgg cacagagagt cttgccggct atcttcgcac gctcactgat gggcagttgc
     3661 tggctatcaa aacgctctca atggacatga acgcgggcta tataagagca gcgcgtatcc
     3721 acttacccag tgcggttgag aaaatcgcct ttgaccgctt ccatgtggcg aagcaactgg
     3781 gcgaggtagt tgataaaacc cgtcagaatg aacatccgca cctccctgtt gaaagccgac
     3841 accaggcaaa aggaacccgc ttcctgtggc agtacagcga taagtggatg accgaatccc
     3901 ggcaggaaaa gctgatgtgg ctgcgtgcac agatgaagct gacgagccag tgctgggcgc
     3961 tgaaagagct ggcaaaggat atctggaaca ggccatggag cgaggaaaga cggagtgact
     4021 ggcagagatg gttggcgctg gcggctaaca gtgacgttcc catgatgaaa aatgccgcga
     4081 aaacgatagg aaaaaggctg taggggatcc tgaatgcgat gcgacacagt gtctcaaacg
     4141 gaaatgcgga ggcacttaac agcaagatca ggctgctgag gataaaagcc aggggatacc
     4201 gaaaccggga gcgctttaaa ctgggggtga tgttccacta cgaaaagctg aatatggcgt
     4261 tctgagcctt cccaccatga tcggggaaga cccatatgca tacagtataa ggggcggtga
     4321 aatttctgca agtgatgggg ggatagccgg tcagaacgtc cccgaaaaca aaccgccccc
     4381 ggtttcagga agggcgaact gaccggcaga ggcagtgtaa caccgcatgt cacaaaggca
     4441 gcactgacgt cgtcagtgct ttttttaccc gtcctcccgg acgctgaagg gcagtttcac
     4501 ccgtgcagct aaag
//
LOCUS       DAJVUP010000229         4450 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.230, whole genome shotgun sequence.
ACCESSION   DAJVUP010000229 DAJVUP010000000
VERSION     DAJVUP010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4450
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.230"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1251)
                     /locus_tag="OQQ75_004003"
     CDS             complement(<1..1251)
                     /locus_tag="OQQ75_004003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AGCS family amino acid carrier protein"
                     /protein_id="HCS1978146.1"
                     /translation="MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFG
                     KSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPRAVFWMWVAAFIG
                     MATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSG
                     VQANAVARALSFSFDFPPLVTGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLT
                     SMVICVINIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMG
                     STPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNDTTYMPLEGIQ
                     LIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNTPKAIWCLRIC
                     TFATVIGGTLLSLPLMWQLADIIMA"
     gene            1530..2483
                     /gene="tal"
                     /locus_tag="OQQ75_004004"
     CDS             1530..2483
                     /gene="tal"
                     /locus_tag="OQQ75_004004"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1978147.1"
                     /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
                     IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS
                     YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
                     FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY
                     ETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARI
                     TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL"
     gene            2598..3185
                     /gene="mog"
                     /locus_tag="OQQ75_004005"
     CDS             2598..3185
                     /gene="mog"
                     /locus_tag="OQQ75_004005"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HCS1978148.1"
                     /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSVLTTPFELET
                     RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ
                     MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAAGNVVVHGIFA
                     SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE"
     gene            complement(3220..3786)
                     /gene="satP"
                     /locus_tag="OQQ75_004006"
     CDS             complement(3220..3786)
                     /gene="satP"
                     /locus_tag="OQQ75_004006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HCS1978149.1"
                     /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF
                     YSGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY
                     LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC
                     GASAIYLAMGEVLNEQFGRTVLPIGESH"
     gene            complement(3935..>4450)
                     /locus_tag="OQQ75_004007"
     CDS             complement(3935..>4450)
                     /locus_tag="OQQ75_004007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978150.1"
                     /translation="AGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMST
                     FEIEQQLLEQFLRNTWKKMDEEHKQEFLHAFDARVNELEELLPLLMKDKLLAKGVSHL
                     LSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIA
                     CLRRMVSATQV"
BASE COUNT         1185 a         1165 c         1134 g          966 t
ORIGIN      
        1 ggccattatg atatctgcca gttgccacat cagcggaagg cttagcaagg tgccgccgat
       61 gaccgttgcg aaggtgcaga tccgcaaaca ccagatcgct ttaggggtgt tcaggcgtaa
      121 aaagaagaga ttgttttcgg cataaatgta gttggcaacg atggagctga aggcaaacag
      181 aataaccacg agggtaacaa actcagcacc ccaggaaccc attagcaccc gcatcgcctt
      241 ctggataagc tgaatacctt ccagcggcat gtaggttgtg tcgttacccg ccagtaatat
      301 cagcatggcg cttgccgtac agatgaccag ggtgtcgata aaaatgccaa tcatctggac
      361 aatcccttgc gctgccggat gcggaggcca ggacgccgct gccgctgccg cgtttggcgt
      421 cgaacccatt cccgcctcat tggaaaacat actgcgctga aaaccgttag taatcgcctg
      481 gcttaaggta tatcccgccg cgccgcctgc cgcttcctgc cagccaaaag cactctcaaa
      541 aatagaccaa atgacgtggg gaagttgccc gatatttatt acgcaaatca ccatgctggt
      601 cagcacccag attatcgcca tcaacgggac aaacccctgc atgagccggg cgacgccatg
      661 aagaccgcga gtgattgcca gcagagcaaa gacagcgaga ataatgcctg tcaccagcgg
      721 gggaaaatca aaagaaaaac tcagggctcg ggcaacggcg ttcgcctgaa ctccgctgaa
      781 aattatgccg taggcgatga gcaaaaagac ggcgaacaga acgcccatcc aacgcatccc
      841 cagcccgcgc gccatatacc atgccggtcc gccacgaaac tgcccattga cgtcacgttc
      901 tttataaagt tgtgcaaggg aacattcggc aaacgaggtc gccatgccga taaacgcggc
      961 aacccacatc caaaagacgg ctctaggtcc accggcggta atagccagcg caacgccggc
     1021 caggttgccg ctacccacgc gcgccgcaag actggtacac aatgactgaa atgaggttaa
     1081 accgcctggc tgtggatgaa tgctattttt aagacttttg ccaaactggc ggatgtagcg
     1141 aaactgcaca aatccggtgc gaaaagtgaa ccaacaacct gcgccgaaga gcaggtaaat
     1201 cattaccgat ccccaaagga cgctgttaat aaaggagaaa aaatctggca tgcatatccc
     1261 tcttattgcc ggtcgcgatg actttcctgt gtaaacgtta ccaattgttt aagaagtata
     1321 tacgctacga ggtacttgat aacttctgcg tagcatacat gaggttttgt ataaaaatgg
     1381 cgggcgatat caacgcagtg tcagaaatcc gaaacagtct cgcctggcga taaccgtctt
     1441 gtcggcggtt gcgctgacgt tgcgtcgtga tatcatcagg gcagaccggt tacatccccc
     1501 taacaagctg tttaaagaga aatactatca tgacggacaa attgacctcc cttcgtcagt
     1561 acaccaccgt agtggccgac actggggaca tcgcggcaat gaagctgtat caaccgcagg
     1621 atgccacaac caacccttct ctcattctta acgcagcgca gattccggaa taccgtaagt
     1681 tgattgatga tgctgtcgcc tgggcgaaac agcagagcaa cgatcgcgcg cagcagatcg
     1741 tggacgcgac cgacaaactg gcagtaaata ttggtctgga aatcctgaaa ctggttccgg
     1801 gtcgtatctc aactgaagtt gatgcgcgtc tttcctatga caccgaagcg tcaattgcga
     1861 aagcaaaacg cctgatcaaa ctctacaacg atgctggtat tagcaacgat cgtattctga
     1921 tcaaactggc ttctacctgg cagggtatcc gtgctgcaga acagctggaa aaagaaggca
     1981 tcaactgtaa cctgaccctg ctgttctcct tcgctcaggc tcgtgcttgt gcggaagcag
     2041 gcgtgttcct gatctcgcca tttgttggcc gtattcttga ctggtacaaa gcgaatactg
     2101 ataagaaaga gtacgctccg gcagaagatc cgggcgtggt ttctgtatct gaaatctacc
     2161 agtactacaa agagcacggt tatgaaaccg tggttatggg cgcaagcttc cgtaacatcg
     2221 gcgaaattct ggaactggca ggctgcgacc gtcttaccat cgcacctaca ctgctgaaag
     2281 agctggctga gagcgaaggg gctatcgaac gtaaactgtc ttacaccggc gaagtgaaag
     2341 cgcgtccggc gcgtatcact gagtccgagt tcctgtggca gcacaaccag gatccaatgg
     2401 cagtagataa actggcggaa ggtatccgta agtttgctat tgaccaggaa aaactggaaa
     2461 aaatgatcgg cgatctgctg taatcattct tagcgtgacc gggaagtcgg tcacgctacc
     2521 tcttctgaag cctgtctgtc actcccttcg cagtgtatca ttctgtttaa cgagactgtt
     2581 taaacggaaa aatcttgatg aatactttac gtattggctt agtttccatc tctgatcgcg
     2641 catccagcgg cgtttatcag gataaaggca tccctgcgct ggaagaatgg ctgacatcgg
     2701 tgctaaccac gccgtttgaa ctggaaaccc gcttaatccc cgatgagcag gcgatcatcg
     2761 agcaaacgtt gtgtgagcta gtggatgaaa tgagttgcca tctggtgctc accacgggcg
     2821 gaactggccc ggcgcgtcgt gacgtaacgc ccgatgcgac gctggcagta gcggaccgcg
     2881 agatgcctgg ctttggtgaa cagatgcgcc agataagcct gcattttgta ccaactgcga
     2941 tcctttcgcg tcaggttggt gtgattcgca aacaggcgct gatccttaac ttacccggtc
     3001 agccgaagtc tattaaagag acgctggaag gtgtgaagga cgctgcgggt aacgttgtgg
     3061 tacacggtat ttttgccagc gtaccgtact gcattcagtt gctggaaggg ccatacgttg
     3121 aaacggcacc agaagtggtt gctgcattca gaccgaagag tgcaagacgc gacgttagcg
     3181 aataaaaaaa tccccccgag cggggggatc tcaaaacaat tagtgggatt caccaatcgg
     3241 cagaacggtg cgaccaaact gctcgttcag tacttcaccc atcgccagat agattgcact
     3301 ggcaccacag atcagaccaa tccagccggc aaagtggatg attgcggcgt taccggcaat
     3361 gttaccgatc gccagcaggg caaacagcac agtcaggcta aagaaaacga attgcagaac
     3421 gcgtgcgcct ttcagcgtgc cgaagaacat aaacagcgta aatacgcccc acagacccag
     3481 gtagacacca aggaactgtg catttggcgc atcggtcaga cccagtttcg gcatcagcag
     3541 aatcgcaacc agcgtcagcc agaaagaacc gtaagaggtg aatgcggtta aaccgaaagt
     3601 gttgcctttt ttgtactcca gcagaccagc aaaaatttgc gcgatgccgc tgtagaaaat
     3661 gcccatggca agaataatac cgtccagagc gaaataaccc acgttgtgca ggttaagcag
     3721 aatggtggtc atgccgaagc ccatcaggcc cagcggtgcc ggattagcca acttagtgtt
     3781 gcccataatt cctcaaaaat catcatcgaa tgaatggtga aataatttcc ctgaataact
     3841 gtagtgtttt cagggcgcgg cataataatc agccagtggg gcagtgtcta cgatcttttg
     3901 aggggaaaat gaaaattttc cccggtttcc ggtatcagac ctgagtggcg ctaaccatcc
     3961 ggcgcaggca ggcgatttgc agtacggctg gaatcgtcac gcgataggcg ctgccgctga
     4021 ccgctttaac cccatttagt gccgcaccta cagggcctcc cagccccgcg ccgcgcagca
     4081 aaccatgccc aagtacgctc attgctgcgt gggtgcgtaa aatgcgggtc agttggctgg
     4141 aaagcaaatg cgacacgcct tttgccaata atttgtcttt catcagcagc ggcagcagct
     4201 cttccagctc attcaccctc gcatcgaacg cgtgcagaaa ctcctgctta tgttcctcgt
     4261 ccattttctt ccaggtatta cgcagaaatt gttccagtaa ctgttgctca atttcaaacg
     4321 tagacatctc tttgtcggct ttcagcttca atcgttttga aacatcgagc aaaatggccc
     4381 gatacaattt accgtgtccg cgcagtttgt tggcgatact atcgccacca aaatgctgta
     4441 attctccagc
//
LOCUS       DAJVUP010000230         4437 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.231, whole genome shotgun sequence.
ACCESSION   DAJVUP010000230 DAJVUP010000000
VERSION     DAJVUP010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4437
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.231"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1089
                     /gene="nadB"
                     /locus_tag="OQQ75_004008"
     CDS             <1..1089
                     /gene="nadB"
                     /locus_tag="OQQ75_004008"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HCS1978151.1"
                     /translation="VVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSG
                     DGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPD
                     FDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGID
                     LTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECL
                     VYGWSAAEDITRRMPDAHGVSTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIV
                     RTTKRLERALRRINMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRG
                     LHFTLDYPELLTHSGPSILSPGNHYINR"
     gene            complement(1074..1811)
                     /gene="trmN"
                     /locus_tag="OQQ75_004009"
     CDS             complement(1074..1811)
                     /gene="trmN"
                     /locus_tag="OQQ75_004009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417070.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(1)(Val)
                     (adenine(37)-N(6))-methyltransferase TrmN"
                     /protein_id="HCS1978152.1"
                     /translation="MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAG
                     VKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHT
                     ADIQQWLTQQTVRFDLIISNPPYYQQGVECAIPQREQARYTTTLDHPSLLTCAAECIT
                     EEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS
                     DRLVIRGPDQNYSEAYTALTQAFYLFM"
     gene            1943..3277
                     /gene="srmB"
                     /locus_tag="OQQ75_004010"
     CDS             1943..3277
                     /gene="srmB"
                     /locus_tag="OQQ75_004010"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HCS1978153.1"
                     /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV
                     LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH
                     THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD
                     RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE
                     RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC
                     YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH
                     RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPSEKQTG
                     KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE"
     gene            complement(3486..4367)
                     /locus_tag="OQQ75_004011"
     CDS             complement(3486..4367)
                     /locus_tag="OQQ75_004011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1978154.1"
                     /translation="MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFS
                     VQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKGSDPDGELRVVSGETLLS
                     YRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELG
                     EQSLVLVASPQIADVDFTEPGRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIEL
                     LSIESIKRCVAANIGVSYLPRFAVEKELESGELIELPFGEQSQTITAMCAHHAGKAVS
                     PAMHTFIQCIEECFLPG"
BASE COUNT         1125 a         1209 c         1126 g          977 t
ORIGIN      
        1 gttgtaggcg cgtgggtatg gaaccgaaat aaagaaacgg tggaaacctg ccacgcaaaa
       61 gcagtggtac tggcaaccgg cggtgcgtcg aaggtgtatc agtacaccac caatccggat
      121 atttcttctg gcgatggcat tgctatggcg tggcgcgcgg gctgtcgggt tgccaatctc
      181 gaatttaatc agttccaccc taccgcactg tatcacccac aggcacgcaa tttcctgtta
      241 acggaagcac tgcgcggcga aggcgcttat ctcaagcgcc cggatggcac gcgttttatg
      301 cccgattttg atgagcgcgg cgaactggcc ccgcgcgata ttgtcgcccg cgccattgac
      361 catgaaatga aacgcctcgg cgcagattgt atgttcctcg acatcagcca taagcccgcc
      421 gattttattc gccagcattt cccgatgatt tatgaaaaat tgctcgggct ggggattgat
      481 ctcacacaag aaccggtacc gattgtgcct gctgcacact atacctgcgg tggtgtaatg
      541 gttgatgatc atgggcgtac ggacgtcgag ggcttgtatg ccattggcga ggtgagttat
      601 accggcttac acggcgctaa ccgcatggcc tcgaattcat tgctggagtg tctggtctat
      661 ggctggtcgg cggcagaaga tatcaccaga cgtatgcctg atgcccacgg cgtcagtacg
      721 ttaccaccgt gggatgaaag ccgcgttgag aaccctgacg aacgggtagt aattcagcat
      781 aactggcacg agctacggct gtttatgtgg gattacgtcg gcattgtgcg cacaacaaaa
      841 cgtcttgagc gcgccctgcg gcgtatcaat atgttgcaac aggaaataga cgaatattac
      901 gcccacttcc gcgtgtcgaa taatttgctg gagctgcgta atctggtgca ggttgcggaa
      961 ttgattgttc gctgtgccat gatgcgcaag gagagtcgtg gcctgcattt cacactggat
     1021 tatccggaac tgctcaccca ttccggtccg tcgatccttt cccccggcaa tcattacata
     1081 aacagataaa aagcctgggt cagcgccgta tacgcttcgg aatagttctg gtctggccca
     1141 cgaatgacta agcgatcgct aaagcattct cccgcctgcg gggagaatgc cagcagcacc
     1201 cgatgcggca gtcgcgcttc gttttccgcc acatccgtcc gcaaacgtaa atgccagccc
     1261 atgcttaatg ccagctccgt aaaaccatta ccaatctgct ctggcagcac tacgcagaaa
     1321 aatccctctt cggtaatgca ctccgccgca caggtcagca gcgatgggtg atcaagcgta
     1381 gtggtatagc gagcctgttc ccgttgaggg atcgcgcact ctactccctg ctgatagtaa
     1441 ggtgggttac tgatgattaa atcgaagcgt actgtctgct gtgtgagcca ctgctgaata
     1501 tccgccgtat ggacgttaat ccgctctgcc cacggggact ggttgatatt ttcctgcgcc
     1561 tgcgcggcag cttcactttc cagctcaacg gcatcaatta tcacgctgtc actggttcgc
     1621 tgcgccagca tcagtgccag caacccgcta cccgcgccga tatcaaggca acgtttcacc
     1681 ccagccaccg gtgcccatgc gcccagcaaa atgccatccg ttcccacttt catcgcacag
     1741 cgatcgtgag caacaaaaaa ctgtttaaaa gtaaatccat tacgacgaag cacggatgta
     1801 gactgtgaca tgaaaataaa accttgcagg aaaaacggcg atagcaccgg gtgagaacaa
     1861 tacccgagaa gcgatatcca tacaaacaga tgaagattgc agccgtaacg tctataatca
     1921 gcgccccaca cagaggtaga acatgactgt aacgactttt tccgaacttg aactcgacga
     1981 aagcctgctg gaagccctcc aggataaagg tttcactcgc ccgaccgcca ttcaggctgc
     2041 cgccattccg cctgcgctcg atggccgtga tgtactcggt tctgcgccga caggcaccgg
     2101 taaaacggcg gcgtatctgc tgccagcgtt gcagcacctg ctcgatttcc cgcgtaagaa
     2161 atccggtccg ccgcgtattt tgatcctcac cccaactcgc gagctggcga tgcaggtggc
     2221 cgatcatgcc cgcgaactgg cgaaacatac gcatctggat atcgccacca ttaccggcgg
     2281 cgtagcctat atgaaccacg cggaagtgtt cagcgaaaat caggacatcg tggtcgccac
     2341 gaccggacgt ctgctgcaat acataaaaga agagaacttc gattgccgcg cggttgaaac
     2401 gctgatcctc gacgaagcag accgtatgct ggatatgggc ttcgctcagg atatcgaaca
     2461 tattgctggc gaaacgcgct ggcgtaaaca gaccctgctc ttttcggcaa cgctggaagg
     2521 cgatgcgatt caggactttg ccgagcgtct gctggaagat ccggtggagg tttctgccaa
     2581 tccgtccacc cgtgagcgca aaaaaattca tcagtggtat taccgcgccg atgacctgga
     2641 acataaaacc gcattgctgg tgcatctgtt aaaacagccg gaagcgaccc gctcaattgt
     2701 gtttgtgcgt aagcgtgaac gtgtgcatga gctggcaaac tggctgcgcg aagcgggcat
     2761 caacaactgc tatctcgaag gtgagatggt acagggcaag cgtaatgaag cgattaaacg
     2821 cctgaccgaa ggccgcgtaa acgtactggt agcaaccgat gttgccgcgc gcggtatcga
     2881 cattccagac gtcagccacg tctttaactt cgatatgccg cgcagtggtg atacttattt
     2941 gcaccgtatc ggacgtaccg cgcgcgccgg tcgtaaaggc accgcgattt cgctggtgga
     3001 agcccatgac catctgctgc ttggcaaagt tggccgttat attgaagagc cgataaaagc
     3061 tcgcgtcatt gaggaactac gcccgaaaac gcgtacgcca agcgagaagc agaccggcaa
     3121 gccatcgaag aaagtactgg caaaacgcgc cgagaagaaa aaagctaaag agaaagagaa
     3181 gccgcgggtg aaaaaacgcc atcgcgacac caaaaatatt ggtaagcgcc gtaaaccgag
     3241 cggaacgggc gtgccaccgc aaacgacaga agagtaatct taattccggg tttaagcccg
     3301 gaattaaaag tgctggcaaa cgcaaaactg cctgatgcgc tacgcttatc aggcctacat
     3361 ggctcatgca atatattgaa tttgcacgat cttgtaggcc ggataaggcg ttcacgccgc
     3421 atccggcatg aacaaaacgc acttcgtcga caagttgggt gccgggttta agcccggcat
     3481 tatttttatc ccggcaaaaa acactcttca atacactgaa taaaagtgtg catcgccggg
     3541 ctaaccgctt ttccagcatg gtgtgcgcac atagccgtaa tggtctgcga ctgttcgcca
     3601 aaaggcaatt caattaattc tccgctctca agctcttttt ccaccgcaaa gcggggcaag
     3661 taactgacac cgatattcgc cgcgacacaa cgtttgatac tttcaatgct taacagctca
     3721 atggtgtttt ccaccgtgat ccgccgctga cgcagcgtgc tctcaaatat ctgccggaag
     3781 acacattgcg gttcgttgat aataaagcta caggcgttat gtcttcccgg ctcagtaaaa
     3841 tcgacatctg caatttgcgg tgaagccacc agcaccagcg attgttcacc caactctcgt
     3901 cggttcaggg catcatcatt ccctacgcga taaaagacgc cgacatcggc ctcatcattc
     3961 agtagcgcat cacggatcac gtaacagttc agcgactgca acgataaacg cacttttggt
     4021 gcgcgttgcc gaaaacgctg caacacctgc ggcattcggt aagagagcaa cgtttcgccc
     4081 gaaacaacgc gtagttcccc gtccggatct gacccctttt tggcagcctc acgaagcgta
     4141 tccatcactc gggtaagttc ataaatgtgc ggcagcaact tttttccttc gcgggtaagg
     4201 cacatccgtc ggccaatttt ctcaaataac tggactgaaa actcctgctc aagctgctga
     4261 atatgaaaag tcaccgtcga ttgtgtacag cacaattttt gcgaagctcg caaaaaggaa
     4321 ccctcttcca ccacggtttt aagcgtaata aaacggcgca gatccataac cccgaaccta
     4381 tcgaaaatat cgaatctaga atataaaaac attcattttt ttaaatgttc tgtgtcg
//
LOCUS       DAJVUP010000231         4429 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.232, whole genome shotgun sequence.
ACCESSION   DAJVUP010000231 DAJVUP010000000
VERSION     DAJVUP010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4429
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.232"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            127..456
                     /locus_tag="OQQ75_004012"
     CDS             127..456
                     /locus_tag="OQQ75_004012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311560.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1978155.1"
                     /translation="MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAE
                     AARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGA
                     LLSMRKS"
     gene            704..949
                     /gene="nrdH"
                     /locus_tag="OQQ75_004013"
     CDS             704..949
                     /gene="nrdH"
                     /locus_tag="OQQ75_004013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HCS1978156.1"
                     /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR
                     AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA"
     gene            946..1356
                     /gene="nrdI"
                     /locus_tag="OQQ75_004014"
     CDS             946..1356
                     /gene="nrdI"
                     /locus_tag="OQQ75_004014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HCS1978157.1"
                     /translation="MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYIL
                     IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG
                     VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA"
     gene            1329..3473
                     /gene="nrdE"
                     /locus_tag="OQQ75_004015"
     CDS             1329..3473
                     /gene="nrdE"
                     /locus_tag="OQQ75_004015"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HCS1978158.1"
                     /translation="MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAF
                     MATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFAYAHTSGFRFQTF
                     LGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDATLALQLTDEMLSGRFQPA
                     TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG
                     APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN
                     ADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADIAISEHYDEL
                     VADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPVAGRINMSNLCSEIL
                     QVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSH
                     IRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT
                     SMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMW
                     AQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPA
                     PFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY
                     AWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL"
     gene            3483..4397
                     /gene="nrdF"
                     /locus_tag="OQQ75_004016"
     CDS             3483..4397
                     /gene="nrdF"
                     /locus_tag="OQQ75_004016"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HCS1978159.1"
                     /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA
                     WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHA
                     RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF
                     LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL
                     KSFAFDLLLELYDNELQYSDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMA
                     EVNPAILAALSPNADENHDFFSGSRIGN"
BASE COUNT         1093 a         1133 c         1130 g         1073 t
ORIGIN      
        1 cgggcctacc ttacctgatt gcgcattcac aacgctttca gaaaagtcca taaagccgcg
       61 atgaacctca gttaagaaaa ttatggtcta cactgaaaat tacatcgaat tctaatgggg
      121 gatcatatgt ttaaccgacc gaaccgcaac gacgttgatg atggcgtgca ggatatccag
      181 aatgatgtca atcaattagc tgacagcctc gaatctgtat tgaagtcctg gggcagcgac
      241 gccaaagggg aagctgaagc cgcacgcagt aaagctcagg cgttgctgaa agaaaccagg
      301 gcgcgaatgc atggtcgtac tcgcgtccag caagccgcgc gcgatgccgt tggctgcgcg
      361 gattcttttg ttcgtgaaag accctggtgt agcgtgggta cagcagctgc ggtaggtatt
      421 tttatcggcg cactgttaag catgcgcaaa tcgtagtgca aaaatgataa taaatacgcg
      481 tctttgaccc cgaagcctgt cttcggggtt tctttttgcc tggtgaatca caaaaatccc
      541 cctcccccgt cacgctcata tccagggtaa tttcgatcac tatttgctat atattgtgta
      601 gttgaatctt tttccaacta catctagtat ctctgtatca acagagagac aacccgacgc
      661 gtatcatcgc gccgtatctt cattttaaac ggaaatacga atcatgcgca taactattta
      721 cactcgtaac gattgcgttc agtgccacgc caccaaacgg gcgatggaaa accgggggtt
      781 tgattttgaa atgattaatg tcgatcgcgt tcctgaagca gcggaagcgt tgcgtgctca
      841 gggctttcgt cagttgccgg tagtgattgc tggcgatctt agctggtctg gtttccgtcc
      901 ggacatgatt aaccgtctgc atccagcgcc acacgcggcc agtgcatgag ccagctcgtc
      961 tacttctcca gcagctccga aaacacgcag cgttttatcg aacgtttagg tctgcccgcg
     1021 gtgcgcatcc cgctcaatga gcgggaacgg attcaggtag acgagcctta catcctgatc
     1081 gtgccctctt acggcggcgg cggtacggct ggcgcggtgc cacgacaggt aattcgcttt
     1141 ttaaacgacg agcacaaccg ggcgttgctt cgcggcgtta ttgcttctgg taatcgcaac
     1201 tttggtgagg cgtatggccg cgccggagat gtgattgccc ggaaatgcgg cgtgccgtgg
     1261 ctgtaccgtt ttgaactcat gggtacgcaa agcgatatcg aaaacgttcg taaaggagta
     1321 accgaatttt ggcaacgaca accgcagaat gcctgacgca ggaaacgatg gattaccacg
     1381 cgctgaatgc gatgcttaac ctctacgata gcgcaggtcg cattcagttc gataaagacc
     1441 gccaggccgt tgacgccttt atggcgacgc atgtgcgtcc gaacagtgtg accttcagta
     1501 gccagcagca gcgcctgaac tggctggtca acgaaggtta ctatgatgaa agcgttctta
     1561 atcgctactc tcgcgacttt gtcattacgc tgtttgccta cgcacacacc agcggttttc
     1621 gtttccagac attcctcggg gcatggaagt tttacaccag ctatacgttg aagacattcg
     1681 acggtaaacg ttatctggaa gattttgccg atcgagtcac gatggtggcg ctgacgctgg
     1741 cacaaggcga tgcgacgctg gcgttgcaac tgaccgatga aatgctgtca ggacgctttc
     1801 agccagccac tccgacattc ctcaactgcg gtaagcagca gcgcggcgaa ctggtttcct
     1861 gttttctgct gcgtattgaa gacaatatgg agtcgattgg ccgggcggta aattccgcac
     1921 tgcaactgtc gaaacgcggc ggcggcgtgg catttttgct gtcgaatctg cgagaagcgg
     1981 gcgcgccaat taaacgtatt gaaaatcaat cttctggcgt aattccggtg atgaaaatgc
     2041 tggaagacgc attttcctat gccaaccaac tcggcgcgcg tcagggggca ggtgcagtct
     2101 atttacatgc tcatcatccc gatattctgc gttttctcga tacaaaacgg gaaaatgccg
     2161 acgaaaaaat ccgcattaaa acactgtcgc tgggcgtggt gatcccggat atcactttcc
     2221 atctggcaaa agagaatgcg cagatggcgc tgttttcgcc ctatgacgtt gagcgagttt
     2281 atggcaagcc gtttgccgat atcgccatca gcgaacacta tgacgaactg gttgccgatg
     2341 aacgcatccg caaaaaatac ctcaacgccc gtgatttctt ccagcggctg gcagaaatcc
     2401 agtttgagtc cggctatccc tacatcatgt atgaagacac ggtaaaccgt gctaaccctg
     2461 tcgccgggcg cataaatatg agtaatctct gctcagagat tttgcaggtc aactgtgcct
     2521 cagagtatga cgagaatctc gactatgccc gcacaggcca tgatatctcc tgcaatttag
     2581 gttcgttgaa tattgcgcac accatggatt cccccgattt tgcccgcacg gtagagactg
     2641 ccgtgcgcgg tttaacggcg gtgtcagata tgagtcatat ccgcagcgtg ccgtccatcg
     2701 aagccggaaa tgccgcctca cacgccatcg gactggggca gatgaattta cacggctatc
     2761 tggcgcgaga aggcatcgct tatggttcgc cggaagcact ggatttcacc aatctctatt
     2821 tctatgccat cacctggcac gcactgcgta cctcgatgtt gctggcgcgc gaacgcggtg
     2881 aaaccttcgc cgggttcaaa cagtcacgtt atgccagtgg tgaatatttt agccaatatc
     2941 tgcaaggtaa ctggcagccg aaaacggcga aagttggcga actgtttgcc cgcagcggta
     3001 ttacgttacc tacccgtgag atgtgggcgc aactgcgcga cgacgtgatg cgctacggca
     3061 tttataacca gaatcttcag gcggtgccgc caaccggttc tatctcttat atcaaccatg
     3121 ctacgtcgag tattcatccg attgtggcga aagtagagat acgcaaagag ggcaaaacag
     3181 gacgcgttta ctaccctgcc ccgtttatga ctaacgagaa tctggcgctg tatcaggatg
     3241 cttacgaaat cggcgcagaa aagatcatcg acacctacgc cgaagcgact cgccatgtcg
     3301 atcaggggct gtcgctgacg ctgtttttcc ccgataccgc caccactcgc gatatcaaca
     3361 aagcgcagat ttacgcctgg cgcaagggta tcaaaacgct ctattacatt cgcctgcgtc
     3421 agatggcgct ggaaggcact gaaattgaag gctgcgtctc ctgtgcactt taaggaatat
     3481 ctatgaaact ctcacgtatc agcgccatca actggaacaa gatatctgac gataaagatc
     3541 tggaggtgtg gaatcgcctg accagcaatt tctggctacc agaaaaggtg ccgctgtcga
     3601 acgatattcc tgcctggcag acattaactg tcgtagaaca acaactgacg atgcgcgttt
     3661 ttactggcct gacgctgctc gacacgctgc aaaatgttat cggcgcgcct tcgctgatgc
     3721 cctatgcact cacgcctcat gaagaagcgg tattatcgaa tatcagcttt atggaagcgg
     3781 ttcatgcccg ctcttacagt tcgattttct cgacgctgtg tcagaccaaa gatgtcgatg
     3841 ccgcctacgc ctggagtgaa gaaaacgcac cgttgcagcg aaaagctcag attattcagc
     3901 aacattatcg cggtgatgat ccgctgaaaa agaaaatcgc cagtgtgttt cttgaatctt
     3961 ttttgttcta ttccggtttc tggctgccga tgtatttttc cagccgcgga aagctgacca
     4021 ataccgcaga tctgatccgt ctgattatcc gcgatgaagc agtccacggt tactacatag
     4081 gctataaata tcagaaaaac atggaaaaga tatctctggg acaacgtgaa gagttgaaga
     4141 gtttcgcctt cgatttgttg ctggaactct acgacaacga gttgcaatac agcgatgagc
     4201 tgtacgccga aaccccgtgg gctgacgatg tgaaagcgtt tctctgttac aacgccaata
     4261 aggctttgat gaatctgggc tacgaaccgt tatttcccgc agaaatggcg gaagtgaatc
     4321 cggcaatcct cgccgcgctt tcgccgaatg ccgatgaaaa tcacgatttc ttttccggtt
     4381 cacgtatagg aaattgaaaa actaagcgat acccctgtcc gcgccttat
//
LOCUS       DAJVUP010000232         4369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.233, whole genome shotgun sequence.
ACCESSION   DAJVUP010000232 DAJVUP010000000
VERSION     DAJVUP010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.233"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            60..1859
                     /gene="cysJ"
                     /locus_tag="OQQ75_004017"
     CDS             60..1859
                     /gene="cysJ"
                     /locus_tag="OQQ75_004017"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent assimilatory sulfite reductase
                     flavoprotein subunit"
                     /protein_id="HCS1978160.1"
                     /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL
                     NQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK
                     FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF
                     FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSV
                     ATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
                     GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT
                     LTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAS
                     SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN
                     PETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKD
                     GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL
                     LEVIAEFGGMDIEAADEFLSELRVERRYQRDVY"
     gene            1859..3571
                     /gene="cysI"
                     /locus_tag="OQQ75_004018"
     CDS             1859..3571
                     /gene="cysI"
                     /locus_tag="OQQ75_004018"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HCS1978161.1"
                     /translation="MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGF
                     KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPHHAMLLRCRLPGGVITTKQWQAIDKF
                     AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN
                     PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT
                     TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY
                     LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI
                     RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRI
                     TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF
                     LPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN
                     RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR
                     DLWD"
     gene            3646..>4369
                     /gene="cysH"
                     /locus_tag="OQQ75_004019"
     CDS             3646..>4369
                     /gene="cysH"
                     /locus_tag="OQQ75_004019"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS1978162.1"
                     /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL
                     PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK
                     VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ
                     SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT
                     RKWEPGMSEEETRFFGLKRECGL"
BASE COUNT         1070 a         1157 c         1254 g          888 t
ORIGIN      
        1 tgttttatgg gcgctgacag ggcgcagaaa cagctttgct tactggaaca taacgacgca
       61 tgacgacaca ggtcccacct tccgcgttgc ttccgttgaa cccggagcaa ctggcacgcc
      121 ttcaggcggc cacgaccgat ttaacgccta cccagcttgc ctgggtttct ggctatttct
      181 ggggcgtact caatcagcag cctgctgcgc ttgcagcgac gccagcgcca gccgcagaaa
      241 tgccgggtat aactattatc tccgcctcgc aaaccggcaa tgcgcgccgg gttgctgaag
      301 cattacgcga tgatttatta gcagcaaaac tgaacgttaa gctggtgaac gcgggcgact
      361 ataaattcaa acaaatcgcc agcgaaaaac tgctcatcgt agtgacgtca acgcaagggg
      421 aaggggaacc gccggaagaa gccgtcgcgc tgcataagtt cctgttctcc aaaaaagcgc
      481 caaagctgga aaacaccgcg tttgccgtgt ttagcctcgg cgatagctct tatgaatttt
      541 tctgccagtc cgggaaagat ttcgacagca agctggcgga actgggtggt gaacgcctgc
      601 tcgaccgtgt cgatgccgat gttgaatacc aggctgctgc cagcgagtgg cgcgcccgcg
      661 tggttgatgc gcttaaatcg cgtgcgcctg tcgcggcacc ttcgcaatcc gtcgctactg
      721 gcgcggtaaa tgaaatccac accagcccgt acagcaaaga cgcgccgctg gtggctagcc
      781 tctctgttaa ccagaaaatt accgggcgta actctgaaaa agacgttcgc catatcgaaa
      841 ttgacttagg tgactcgggc ctgcgttacc agccgggtga cgcgctgggc gtctggtatc
      901 agaacgatcc ggcactggtg aaagaacttg tcgaactgct gtggctgaaa ggcgatgaac
      961 ctgtcaccgt cgagggcaaa acgttgcctc tgaacgaagc gctacagtgg cacttcgaac
     1021 tgaccgtcaa caccgccaac attgttgaga attacgccac gcttacccgc agcgaaacac
     1081 tgctgccgct ggtgggcgat aaagcgaagt tacagcatta cgccgcgacg acgccgattg
     1141 tcgacatggt gcgtttctct ccggcgcaac tggatgccga agcgctgatt aatctgctgc
     1201 gcccgctgac cccgcgcctg tattccatcg cctcctcgca ggcggaagtc gagaacgaag
     1261 tacacgtcac cgttggtgtg gtgcgttacg acgtggaagg ccgagcccgt gccggtggtg
     1321 cctccagctt cctcgcggat cgcgtggaag aagagggcga agtccgcgta tttatcgaac
     1381 ataacgataa ctttcgcctg cccgctaacc cggaaacccc ggtgattatg attggcccag
     1441 gcaccggtat tgcgccgttc cgcgccttta tgcagcaacg cgccgccgac gaagcgccag
     1501 gtaaaaactg gctgttcttt ggtaatccgc actttacgga agacttcctg taccaggtgg
     1561 agtggcagcg ctacgtcaaa gatggcgtgc tgacacgtat cgatcttgcc tggtcgcgcg
     1621 accaaaaaga aaaagtttac gtacaagaca aactgcgcga acagggcgcg gagctgtggc
     1681 gctggatcaa tgatggtgcc cacatttatg tctgcggcga cgctaatcgc atggcgaaag
     1741 acgttgagca ggcacttctg gaagtgattg ccgaatttgg tggcatggac atcgaagcgg
     1801 cggatgaatt tttaagtgag ctgcgcgtag agcgccgtta tcagcgagat gtctactaat
     1861 gagcgaaaaa catccagggc ctttagtggt cgaaggaaaa ctgacagacg ccgagcgcat
     1921 gaagcttgaa agcaactacc tgcgcggcac cattgcggaa gatttaaacg acggtctgac
     1981 cggcggcttt aagggcgaca acttcctgct gatccgcttc cacggcatgt atcagcagga
     2041 tgaccgcgac atccgcgccg aacgtgctga acagaagctg gagccgcacc acgcgatgct
     2101 gcttcgctgt cgtctgccgg gtggggtgat taccactaaa cagtggcagg cgatcgacaa
     2161 atttgccggt gaaaacacca tctatggcag cattcgcctg accaaccgcc agacattcca
     2221 gttccacggc attctgaaaa agaacgtcaa accggtgcac cagatgctgc actcggtcgg
     2281 tcttgatgcg ctggcgacag ctaacgacat gaaccgtaac gtactctgca cctcgaaccc
     2341 ttacgagtcg cagctgcacg cggaagcgta cgagtgggcg aagaagattt ctgagcatct
     2401 gttgcctcgt acccgcgcgt atgcggagat ctggctcgac caggaaaaag tcgccactac
     2461 tgatgaagaa ccgatccttg gtcagaccta cctgccgcgt aagttcaaaa ccacggtagt
     2521 gatcccgccg cagaacgata tcgatctgca tgccaacgac atgaacttcg tggcaatcgc
     2581 cgaaaacggc aagctggtag gcttcaacct gctggtgggc ggtgggcttt ctatcgaaca
     2641 cggcaacaag aaaacctacg cccgcacggc gagcgagttt ggctatctgc cgctggagca
     2701 tacgctggcg gtggccgaag ctgtcgtgac aactcagcgt gactggggta accgaaccga
     2761 tcgtaaaaat gccaaaacca aatacacgct ggagcgcgtg ggggttgaga cgtttaaagc
     2821 ggaagtggag cgtcgcgcgg ggatcaaatt tgaaccgatc cgtccatatg agttcaccgg
     2881 acgaggcgat cgtattggct gggttaaggg cattgatgat aactggcacc tgacgctgtt
     2941 tatcgaaaat ggtcgcatcc ttgattatcc ggggcgtccg ctgaaaaccg gcctgctgga
     3001 gatcgcgaag atccacaaag gcgatttccg cattacggcg aaccagaatc tgatcatcgc
     3061 cggtgtaccg gaaagcgaga aagcgaagat cgagaagatc gccaaagaga gcgggttaat
     3121 gaatgccgtc acgccgcagc gtgaaaactc gatggcctgc gtgtcattcc cgacttgccc
     3181 gctggcgatg gcggaagcag agcgtttcct gccgtctttt atcgacaaca tcgataattt
     3241 aatggcgaaa catggtgtca gcgatgagca tatcgtgatg cgtgtaacag gctgcccgaa
     3301 cggttgtggt cgcgcgatgc tggcggaagt gggcctggtg ggtaaagcgc cgggtcgcta
     3361 caacctgcat cttggcggca accgcattgg gacacgtatc ccacggatgt ataaagaaaa
     3421 catcaccgag ccggaaatcc tggcgtcgct tgatgaactg atagggcgct gggcgaaaga
     3481 gcgcgaagcg ggtgaaggct tcggcgactt tacggtgcgt gcgggcatca ttcgcccggt
     3541 gctcgatccg gcgcgcgatt tgtgggatta accatcagcc cggtcttgta ggcctgataa
     3601 gaacgcgtga gcgtcgcatc aggcaaggca aacagtgagg aatctatgtc caaactcgat
     3661 ctaaacgccc tgaacgaact gccgaaggta gatcgcattc tggcgctggc ggaaactaac
     3721 gccgaactgg aaaaactgga cgctgaaggc cgcgtagcct gggcgctgga taatctgccc
     3781 ggtgaatatg tactttcttc cagctttggc attcaggcgg cggtgagcct gcatctggtg
     3841 aatcaaattc gcccggatat tccggtgatc ctcaccgata cgggttactt gttcccggaa
     3901 acctaccgct ttattgacga gttaacggac aaactcaagc tcaacctgaa agtgtaccgt
     3961 gctaccgaaa gcgcagcctg gcaggaagca cgctacggaa aactgtggga gcagggcgtt
     4021 gaaggcattg aaaagtacaa tgacatcaac aaagtcgaac cgatgaaccg ggctctgaaa
     4081 gaacttaacg cgcaaacctg gtttgctggc ctgcgccgtg aacaatccgg cagtcgcgcc
     4141 aatttaccgg tgctggcaat tcagcgtggc gtatttaaag tgctgccgat tatcgactgg
     4201 gataaccgaa ctatttatca gtacctgcaa aaacatggcc tgaaatatca cccattatgg
     4261 gatgaaggat atttatcggt cggtgatacc catacaaccc gtaaatggga acctggcatg
     4321 tcggaagaag aaacacgttt ctttggctta aaaagggaat gtggattgc
//
LOCUS       DAJVUP010000233         4294 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.234, whole genome shotgun sequence.
ACCESSION   DAJVUP010000233 DAJVUP010000000
VERSION     DAJVUP010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4294
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.234"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            46..2208
                     /gene="ybiO"
                     /locus_tag="OQQ75_004020"
     CDS             46..2208
                     /gene="ybiO"
                     /locus_tag="OQQ75_004020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001267224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel protein"
                     /protein_id="HCS1978163.1"
                     /translation="MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQ
                     KKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEV
                     SRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCAL
                     PLYRKMGLWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRT
                     IAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIHDETARYWSRRLSWLSSLIG
                     YGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLA
                     FFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSG
                     MFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFD
                     FWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRT
                     LLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV
                     FIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGI
                     GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTL
                     RVSFTTLPLKQWTVRFALDSQVKKHFDLVGVRAPVQTY"
     gene            complement(2268..3194)
                     /gene="rlmF"
                     /locus_tag="OQQ75_004021"
     CDS             complement(2268..3194)
                     /gene="rlmF"
                     /locus_tag="OQQ75_004021"
                     /EC_number="2.1.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
                     /protein_id="HCS1978164.1"
                     /translation="MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSV
                     DFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP
                     ANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLR
                     RQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGG
                     QQQELWCEGGEVAFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVV
                     KKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR"
     gene            3470..3729
                     /locus_tag="OQQ75_004022"
                     /pseudo
     CDS             3470..3729
                     /locus_tag="OQQ75_004022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415327.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
     gene            3994..>4294
                     /locus_tag="OQQ75_004023"
     CDS             3994..>4294
                     /locus_tag="OQQ75_004023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS1978165.1"
                     /translation="MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTL
                     VVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPG"
BASE COUNT          998 a         1129 c         1076 g         1091 t
ORIGIN      
        1 gcatctatac ttatcttttt gctctgtttt ctcactggag gagtcatgcg gtggatcctg
       61 ttcatcctct tctgcctgct gggcgcacct gcccacgcgg tatccatacc cggcgttaca
      121 accacaacga caacggactc aacgactgaa ccggccccgg aaccggatat cgaacaaaaa
      181 aaagcggcct atggcgcact agcggatgtg ctggataacg acacctcgcg taaagaattg
      241 atcgaccagt tgcgtactgt cgccgcgacg ccccctgcgg aaccggtccc gaagatcgtg
      301 ccgccgacgc tggttgaaga gcaaaccgtg ctgcaaaagg tcaccgaagt cagccgccat
      361 tatggtgaag ccctttccgc ccgcttcggg caactttatc gcaatattac cggctccccg
      421 cataagccgt ttaatccaca aacattcagc aatgcgctga cccatttttc aatgttagcg
      481 gtattagtgt ttggttttta ctggctgatt cgcctgtgcg cactgccgct gtatcgcaaa
      541 atgggcctgt gggcgcggca aaaaaatcgt gagcgcagta actggttgca gcttccggcg
      601 atgattatcg gggcgtttat tatcgaccta ctgttactgg cactgacatt atttgtcggc
      661 caggtattaa gcgacaacct gaatgcaggc agtcgcacca tcgctttcca acaaagtttg
      721 tttctcaacg cctttgccct gattgaattt ttcaaagctg tactacgcct gattttttgc
      781 ccaaacgtgg ctgaactgcg cccgttcacg attcatgacg agaccgcccg ttactggagt
      841 cgtcgcctga gctggttaag cagtttgata ggttatggcc tgattgtggc cgtgccgatt
      901 atctctaatc aggtgaatgt acagataggt gcgctggcga acgtcatcat tatgctgtgc
      961 atgaccgtct gggcgttgta cctgatcttt cgcaataaaa aagagattac ccaacatttg
     1021 ctcaactttg cggagcattc gctggccttt ttcagcctgt ttatccgcgc ctttgcgctg
     1081 gtgtggcact ggctggcaag cgcctatttt atcgtgctgt ttttcttttc gttgttcgat
     1141 ccgggcaaca gcctgaaatt tatgatgggt gcaacggtgc gcagcctggc gattattggt
     1201 atcgcagcgt ttgtttccgg tatgttttcc cgctggctgg cgaaaaccat caccctctcg
     1261 ccacatactc agcgtaacta tccggagttg caaaaacggc tgaatggctg gctttcggcg
     1321 gcgctgaaaa cggcgcgtat tctgaccgtc tgcgtggcgg taatgttgct gttgagcgca
     1381 tggggattgt tcgatttctg gaactggctg caaaacggcg cggggcagaa aaccgtagat
     1441 atcctgatcc gtatcgcact tattcttttt ttctcggcgg ttggctggac ggtgctcgcc
     1501 agtttgatcg aaaaccggct ggcttcggat attcatggcc gcccgctacc cagcgcccgt
     1561 acgcgtaccc tgctgacgct gtttcgtaac gcgctggcgg tgattatcag taccatcacc
     1621 atcatgattg tgttgtcgga aatcggcgtc aatatcgcgc cattgctggc aggtgccggg
     1681 gcattaggtc tggctatctc gtttggttcg caaacgctgg tgaaagatat cattaccggg
     1741 gtgtttattc agtttgaaaa cggcatgaac actggagatt tggtgactat cgggccgttg
     1801 accggcacag tggaacggat gtcgattcgc tccgtgggcg tgcgccagga taccggggcg
     1861 tatcacatca ttccgtggtc ttcgataacc acctttgcta acttcgtccg cggtattggt
     1921 tcggtagtgg caaactacga tgttgatcgc catgaagatg ctgataaagc caatcaggca
     1981 ctgaaagatg cggtagcgga attgatggaa aacgaagaaa ttcgcgggct gattattggt
     2041 gaaccgaatt ttgccgggat tgtcggctta agcaataccg cgtttacact gcgtgtttcg
     2101 ttcaccacgc tgccactcaa acagtggacg gtacgctttg ccctcgacag ccaggtgaaa
     2161 aaacatttcg acctggtggg cgttcgcgcg ccagtgcaga cttattaggt gctgcctact
     2221 ccgggcgcga ccccggctga accgttaccg ccgggggagc caacgcttta acgctggcga
     2281 ttgacaaaac ggcggcgctg ctcgtcgttc ataaaggtcc aggcaataaa gcgactctgc
     2341 ttttgcccct gggccatctc tttttttacc accttcaccg cgcccacgtc ggtcagagca
     2401 cgatacaacg gcggtaagtt ttcaccacga gataccagcg aggtaaacca catcacctgc
     2461 ttcgcgaagc ctttgctctc ttcaatcatc tttttgataa aggcgacttc accaccttca
     2521 caccacaact cctgttgctg accaccaaag ttcagtgcat cgtctttgtt cagccccagg
     2581 ttacggcgtt tacgctcact acctgcccgc gctgcagcgg cggaatcgtg gaatggcggg
     2641 ttacacaagg tcgcgtcgta ttgctcgttt ttatggatga tgccgttaaa aattgcccca
     2701 ctctcttttt gccgacgcag acgaatggcg cggttaagcc ccggattagc actgataatc
     2761 gcctgcgcac tgcttaacgc ctggctgctg gtttcactac cggtaaaacg ccagccatat
     2821 tcatgtacgc caatcagcgg ataaatacag ttcgcaccaa cgccgatatc cagaatgctg
     2881 gcattcgctg gaattgttcc gcttgcttca gccagtaaat cggcaaggtg atgaatataa
     2941 tccgcccggc cgggtactgg tgggcagaga aaaccgtcgg ggatatccca gttcgctacg
     3001 gcgtaaaaat gggccagcaa cgccttattg agcgccttca ccgccagcgg attggcaaag
     3061 tctacgcttt gctccccggc gggtgtaagc gtgaggaatt gcctgagttc aggattgacc
     3121 tgacaaagcg tggcgagatc gtagcggctg tgatgacggt tgcgcggatg caaccccggt
     3181 ttctgggcgg acatagcatt ctcctttaag cagcggcgta agatacccgc ataacgcgac
     3241 agggtaaata tctggctgcg tttatcattc cccaaaacct taacatggct atggtttatg
     3301 gcaattcatc ataaaaatca gcattatgca tgtcattgat ttgtcttatt ttgtaaaaat
     3361 atatcgttca aaaaataagc acatctctgt caattttttg cgtcatttgc atcgcgcagg
     3421 cgacctacac ttatcaggca ctacccgttg tatttatgag gatgtcatta tgaaaaagtg
     3481 cctcacacta ctgattgcca ccgtcctgag cagaatctct ctcacggctt atgccgcgca
     3541 accgatgagt aacctggaca gcggtcagct acggcccgcg gtaccgtttc ggcaactggc
     3601 gcatcaaacc taagcgatct ggaggataaa ctggcagaaa aagcgcgcga acaaggcgcg
     3661 aaaggttatg tcattaattc cgcaggcgga aatgaccaga tgttcggtac tgcaaccatc
     3721 tacaaataac cccaccaacg taactgcatt cgcctctgga tgcagttttc gcctgttttg
     3781 taatcaaaaa acatcaaata tgaactcaat gtaaataaat gtatttcttt ttcgcgcaat
     3841 gggtgataga aaatcgcgcc aagtgataat gtttatcaaa attattatca cttgcatgaa
     3901 cactatcacg ggattaacag tggcatcgca tccgcagaga tgctttctcg tgacagtgaa
     3961 aatttcaaca tataagaaaa agtcacctgc aaaatggaaa acaatcgcaa tttccctgcc
     4021 agacaatttc attcgctcac gttctttgcc ggtctttgta ttggcatcac gcctgtggct
     4081 caggcactcg ccgccgaagg gcaaactaac gcggatgaca cgctggttgt cgaagcatca
     4141 acgccttcgc tttatgcgcc acaacaatct gccgatccga aattctcgcg tccggtagcg
     4201 gatactaccc gcacgatgac ggtgatttct gaacaagtga ttaaagatca gggcgcaacc
     4261 aaccttaccg acgcgctcaa aaacgtcccc ggcg
//
LOCUS       DAJVUP010000234         4285 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.235, whole genome shotgun sequence.
ACCESSION   DAJVUP010000234 DAJVUP010000000
VERSION     DAJVUP010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4285
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.235"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..300
                     /locus_tag="OQQ75_004024"
     CDS             <1..300
                     /locus_tag="OQQ75_004024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1978166.1"
                     /translation="WYEMHRQLEYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKENRLS
                     QSKFRCQVCGYTANADVNGARNILAAGHAVLACGEMVQSGRPLKQEPTEMIQATA"
     gene            complement(340..1554)
                     /gene="ydcO"
                     /locus_tag="OQQ75_004025"
     CDS             complement(340..1554)
                     /gene="ydcO"
                     /locus_tag="OQQ75_004025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BenE family transporter YdcO"
                     /protein_id="HCS1978167.1"
                     /translation="MLRCLYAITYEVTMRLFSIPPPTLLAGFLAVLIGYASSAAIIWQ
                     AAIVARATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLT
                     LNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAEILLRFGLQAFASLDGQ
                     FTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPD
                     FSFAHSLSVALPLFLVTVASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVY
                     SVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITEMMAALPVSWIQ
                     MLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCY
                     VVLNLIADRNQY"
     gene            1607..2143
                     /gene="sutR"
                     /locus_tag="OQQ75_004026"
     CDS             1607..2143
                     /gene="sutR"
                     /locus_tag="OQQ75_004026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SutR"
                     /protein_id="HCS1978168.1"
                     /translation="MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNE
                     SSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHF
                     SIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR
                     NGGEQTVHFHSLIHYPRS"
     gene            2216..4177
                     /gene="rlhA"
                     /locus_tag="OQQ75_004027"
     CDS             2216..4177
                     /gene="rlhA"
                     /locus_tag="OQQ75_004027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA 5-hydroxycytidine C2501 synthase"
                     /protein_id="HCS1978169.1"
                     /translation="MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA
                     SNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMG
                     ILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATI
                     EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS
                     MKDNDQTANLGALIDAGVRSFKIEGRYKDMNYVKNITAHYRQMLDAIIEERGDLARAS
                     SGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDV
                     AVTEPLANGDGLNVMIKREVIGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNR
                     NLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNA
                     EKAMNNLKDGLAKLGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASY
                     QRGSRKPVAEPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPV
                     MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKN
                     HILKMPLPGSVVASVSPDELLKTLPKRKG"
BASE COUNT         1117 a         1098 c         1109 g          961 t
ORIGIN      
        1 tggtatgaaa tgcaccgcca gcttgagtac aagcagctct ggcgtggcgg tcaggtgctt
       61 gctgttccgc cagcgtatac aagccagcgt tgcgcgtact gtggtcatac agcgaaagag
      121 aaccgcctgt cacaaagtaa attcagatgc caggtatgtg gatatacagc gaacgccgat
      181 gtaaatggcg ctcgtaacat tttagcggcg gggcacgccg ttcttgcctg tggagagatg
      241 gtgcagtcag gccgcccgtt gaagcaggaa cccaccgaaa tgattcaggc gacagcctga
      301 acgtagcagg gatccacgtc tttcagggcg tgtaggatgt caatattggt ttctgtcagc
      361 gattaaattc aacaccacgt aacaaacgcc tccggcaatt aatccccaga acgcagaacc
      421 aatcccgacc agcgtcaatc cacttgccgt taccagaaat gccaccaccg ccgcgtcgcg
      481 ctcacgctca ttatgcagcg cctgatacaa actgccgcca atggtactca acagcgccag
      541 acctgccagc atctggatcc aacttacggg cagggcagcc atcatctcgg taatggcact
      601 accaaacaga cctgcgagca aatagaaaat gcctgcaacg gcagctgcca gccaacgttg
      661 atctttatcc ggatgcgctt ccgggctttg gcaaatagcc gcggtgattg ccgcaatacc
      721 gacggaataa acgccgaaag gggaaaaaac cagtgccagc aatccagtaa atacaattaa
      781 tggcgaaaca ggagccgaat atccagctgc tttcattgct gcgatacccg gtgcgttttg
      841 cgatgccacc gtcaccagaa aaagggggag tgcaacgctc aggctgtgag caaacgaaaa
      901 atcaggggta atataagtgg ggagaacggg tttaaagaca acatcagttg tgacaacgtc
      961 accttgcgcg atgacgatca cgatcccaat aatcatcgcg gcaattaccg catagcgcgg
     1021 cgcaacggcc ttggttgcca gccataccag caacatactt ccacacaacg taaattgacc
     1081 gtccagactg gcaaacgcct gtaaaccaaa gcgtaataaa atctcggcaa gcattgccgc
     1141 cgcaagcgag tgcggaataa tgcgcatcag acgagcaaag agtcccgtta tgccgcagag
     1201 gactattaac gcgttggtga caataaaaac gccgatggct tcgttaagtg ttagtccctg
     1261 caatccggtg accaacaaag ccgcgccagg cgttgaccat gcggtgagaa caggtacgcg
     1321 ataccataat gtcagagtca gcgtactgac gcccattgcc agccccagcg ccgtcatcca
     1381 gccagagatt tgtgcagtgg tggctctggc gacaatcgct gcttgccaga ttattgccgc
     1441 tgaactggcg tagccaatta ataccgccag aaaccccgcc agtagcgtgg gtggaggaat
     1501 agaaaacaga cgcatagtca cctcgtacgt tatagcgtac aggcaccgta gcatttgtcc
     1561 gttataacgc acaagtgata aacttccgtt ttgccggagg agtcgcatgg aaaatctcgc
     1621 tcgcttttta tccaccacac ttaaacaact acgccagcag cgcggctgga gtctttcgcg
     1681 actggcagaa gcgacgggcg tttctaaagc aatgttaggg cagattgagc gtaatgagtc
     1741 cagtccgacg gtcgcgacat tatggaaaat tgccaccggg ttgaacgtac cattttcaac
     1801 atttatttct ccgccgcagt ccgctacgcc ttcagtttat gatccacaac agcaggcgat
     1861 ggtgatcact tcgctgtttc cttatgatcc acaactctgc tttgaacact tctcgattca
     1921 gatggcatct ggtgcaataa gcgaatcgac gccccatgag aagggggtaa tcgaacatgt
     1981 cgtcgtcatt gatggacaac ttgatctgtg cgttgatggg gaatggcaga cccttaattg
     2041 tggggaaggc gttcgatttg ctgcagacgt cacgcatatc tatcgtaatg gtggggagca
     2101 aaccgtacat tttcattccc tcatccatta cccgcgcagt taagcgggaa aactatttcg
     2161 caacgtcgcg cttgtggcta aaatagccgc catttttcag ctactggata agaatgtgac
     2221 cgtatcttct catcgacttg aactgttaag cccggcacgc gatgccgcca ttgcccgcga
     2281 agctattttg cacggtgccg atgctgttta tatcggcggc cctggttttg gtgcccgtca
     2341 taatgccagt aatagcctga aagatattgc cgagctggtg ccgtttgccc atcgttatgg
     2401 tgcaaaaatt ttcgtcacgc ttaacaccat tttgcatgat gatgagctgg aacccgcgca
     2461 acggctgatt actgacctct accagaccgg tgtcgatgcg ctgattgttc aggatatggg
     2521 gattctggaa cttgatattc cgccgattga actgcacgcc agtacgcagt gcgacattcg
     2581 tacagttgaa aaagcgaagt tcctctctga tgttggcttc acgcagattg tgctggcgcg
     2641 agagctgaat cttgatcaga tccgcgcgat tcaccaggct acggacgcga ccattgaatt
     2701 ctttattcat ggggcactgt gcgtggccta ttcgggtcag tgctacattt ctcatgcgca
     2761 aacagggcgt agcgccaacc gtggcgattg ctcgcaggcg tgccgtttgc catacacatt
     2821 gaaagacgat caggggcggg tggtttccta tgaaaaacat ctgctgtcga tgaaagataa
     2881 cgatcagact gccaacctcg gcgcgctgat tgatgctggt gtacgctcct tcaagattga
     2941 aggtcgttac aaagatatga actacgtgaa gaatatcacc gcccattatc gccagatgct
     3001 tgatgccatt attgaagaac gtggcgatct ggcgcgcgct tcatcaggtc gtactgaaca
     3061 tttctttgtt ccatcgacgg aaaagacttt ccaccgtggt agcacagatt attttgtgaa
     3121 tgcccgtaaa ggcgatattg gcgcgttcga ttcgccgaaa tttatcggcc tgccggtggg
     3181 tgaagtattg aaagtggcga aagatcatct cgatgttgcc gtcaccgagc cactggcaaa
     3241 tggtgatggc ctgaacgtga tgattaaacg tgaagtcatc ggttttcgtg ccaatacggt
     3301 cgagaaaacc ggagaaaatc agtaccgcgt ctggcccaat gaaatgccag cagatttgca
     3361 caaaattcgt ccacatcacc cactaaaccg taatcttgat cataactggc agcaggcact
     3421 gacaaaaacc tccagcgaac gtcgggtggc ggtagacatt gaactgggcg gctggcagga
     3481 acaactgatt ctgaccctca ccagtgaaga gggtgtcagc atcacgcata cgctggacgg
     3541 gcagttcgac gaagccaata acgccgaaaa agcaatgaac aatctgaagg atggtctggc
     3601 aaaactgggg caaaccctct attacgcccg cgatgtgcaa attaatttgc cgggggcgct
     3661 gtttgtacca aacagtctgt taaaccagtt ccgccgtgaa gctgctgaca tgctggatgc
     3721 tgcgcgtctt gccagttacc agcgcggcag ccgtaaaccg gttgctgagc ctgcgccggt
     3781 ttatccgcaa acgcatctga gtttcctcgc gaacgtatac aaccagaaag cgcgtgaatt
     3841 ttatcatcgc tatggtgtgc agctgattga cgcggcgtat gaggcacatg aagagaaggg
     3901 cgaagtcccg gtgatgatca ccaagcattg tctgcgcttt gcctttaatc tgtgcccgaa
     3961 acaggcgaaa ggcaatatca aaagctggaa ggcgacgcca atgcaactgg ttaacggcga
     4021 tgaagtatta acgctaaagt ttgattgccg cccatgcgag atgcacgtca ttggcaaaat
     4081 caaaaatcac atactgaaaa tgccgttacc gggaagcgta gtggcatccg taagtccgga
     4141 tgagctgctg aaaacattgc ctaagcgaaa agggtaaaac gccagttttc tggttactca
     4201 caactcattg aatctgcatg atattgcctg ccgggtaagg cgtcacgccg catccggcat
     4261 caaacgactc aacgttgtcc cgctt
//
LOCUS       DAJVUP010000235         4266 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.236, whole genome shotgun sequence.
ACCESSION   DAJVUP010000235 DAJVUP010000000
VERSION     DAJVUP010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4266
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.236"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..212)
                     /locus_tag="OQQ75_004028"
     CDS             complement(<1..212)
                     /locus_tag="OQQ75_004028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HCS1978170.1"
                     /translation="MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKF
                     RASGQPVFLVRVGWSADYAEALKQPV"
     gene            522..2294
                     /gene="aspS"
                     /locus_tag="OQQ75_004029"
     CDS             522..2294
                     /gene="aspS"
                     /locus_tag="OQQ75_004029"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HCS1978171.1"
                     /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI
                     VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII
                     NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
                     ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD
                     EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE
                     RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI
                     DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMI
                     FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP
                     FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE
                     EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE
                     APSFANPTALAELSIQVVKKAENN"
     gene            2412..2864
                     /gene="nudB"
                     /locus_tag="OQQ75_004030"
     CDS             2412..2864
                     /gene="nudB"
                     /locus_tag="OQQ75_004030"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HCS1978172.1"
                     /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE
                     EGETAPQAAMREVKEEVTIDVVAEQLTLIDSQRTVEFEIFSHLRHRYAPGVTRNTESW
                     FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA"
     gene            2893..3633
                     /locus_tag="OQQ75_004031"
     CDS             2893..3633
                     /locus_tag="OQQ75_004031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1978173.1"
                     /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD
                     ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL
                     SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVITFEKGDEDTIMEAALEAGAE
                     DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR
                     LIDMLEDCDDVQEVYHNGEISDEIAATL"
     gene            3668..4189
                     /gene="ruvC"
                     /locus_tag="OQQ75_004032"
     CDS             3668..4189
                     /gene="ruvC"
                     /locus_tag="OQQ75_004032"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005068993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HCS1978174.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR
                     LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY
                     AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM
                     SESRLNLARGRLR"
BASE COUNT         1053 a         1060 c         1199 g          954 t
ORIGIN      
        1 tcaaccggct gttttaatgc ttcggcgtaa tcggcagacc agccaactcg caccagaaac
       61 acgggctgac cgctggcgcg aaatttcgcc gccagcttcc cggcgcgatt aactacctca
      121 tcggcagtat gtggaccacc ggcaaaaggt aagatgcctt cttgtaaatc gatcaccacc
      181 aacgcagtgg ttttagcatt aagttcaagc atgctgactc ctgaaaaaac aaaatcgtgc
      241 ctcacacctt aatgcgatta gccgatggcg gaacgacaaa ttttgttaat ttttatgagt
      301 tcgggcaaca cctttatagc aaactggcgt agagtctgat ttcaggcccg atataaagtg
      361 gtaacgaggc gttccagcgc gggctaggct cttacggtgc ggcagaattt ccagtataat
      421 agccgccttt tttcattcag ttgtgacata cagctaacgc tgcgacttgg tcacctgcgc
      481 agcagggggc atccgccggc agctaagtta agggatatct catgcgtaca gaatattgtg
      541 gacagctccg tttgtcccac gtggggcagc aggtgactct gtgtggttgg gtcaaccgtc
      601 gtcgtgatct tggtagcctg atcttcatcg atatgcgcga ccgcgaaggt atcgtgcagg
      661 tatttttcga tccggatcgt gcggacgcgt taaagctggc ctctgaactg cgtaatgagt
      721 tctgcattca ggtcacgggc accgtacgtg cgcgtgacga aaaaaatatt aaccgcgata
      781 tggcgaccgg cgaaatcgaa gtgctggcgt cctcgctgac tatcatcaac cgcgcagatg
      841 ttctgccgct tgactctaac cacgtcaaca ccgaagaagc gcgtctgaaa taccgctacc
      901 tcgacctgcg tcgtccggaa atggctcagc gcctgaaaac ccgcgctaaa atcaccagcc
      961 tggtgcgccg ttttatggat gaccacggct tcctcgacat cgaaactccg atgctgacca
     1021 aagccacgcc ggaaggcgcg cgtgactacc tggtgccttc tcgtgtgcac aaaggtaaat
     1081 tctacgcact gccgcaatcc ccacagttgt tcaaacagct gctgatgatg tccggttttg
     1141 accgttacta tcagatcgtt aaatgcttcc gtgacgaaga cctgcgcgct gatcgtcagc
     1201 ctgagtttac tcagatcgat gtggaaactt ctttcatgac cgcgccgcaa gtgcgtgaag
     1261 tgatggaagc gctggtgcgt catttgtggc tggaagtgaa gggcgtggat ctgggcgatt
     1321 tcccggtaat gacctttgcg gaagcagaac gccgttatgg ttctgataaa ccggatctgc
     1381 gtaacccgat ggaactgacc gacgttgccg atctgctgaa atctgttgag tttgcagtat
     1441 ttgcggggcc ggcgaacgat ccgaaaggcc gtgttgccgc tctacgtgtt ccgggtggcg
     1501 catcgctgac ccgtaagcag atcgacgaat acggtaactt cgttaaaatc tacggcgcga
     1561 aaggtctggc ttacatcaaa gttaacgaac gcgcgaaagg tctggaaggt atcaacagcc
     1621 cggtagcgaa gttccttaat gcagaaatca tcgaagccat cctggatcgt actgccgcgc
     1681 aagatggcga tatgattttc ttcggtgccg acaacaagaa aattgttgcc gacgcgatgg
     1741 gcgcactgcg cctgaaagtg ggtaaagacc ttggtctgac cgacgaaagc aaatgggcac
     1801 cgctgtgggt tatcgacttc ccgatgtttg aagacgacgg tgaaggcggc ctgacggcaa
     1861 tgcaccatcc gttcacctca ccgaaagaca tgactgctgc agaactgaaa gctgcaccgg
     1921 aaaatgcggt ggcgaacgct tacgatatgg tcatcaatgg ttacgaagtg ggcggtggtt
     1981 cagtacgtat ccataatggt gatatgcagc agacggtgtt tggtattctg ggtatcaacg
     2041 aagaggaaca gcgcgagaaa ttcggcttcc tgctcgacgc cctgaaatac ggtactccgc
     2101 cgcacgcagg tctggcattc ggtcttgacc gtctgaccat gctgctgact ggcaccgaca
     2161 atatccgtga cgttatcgcc ttcccgaaaa ccacggcggc agcgtgtctg atgactgaag
     2221 caccgagctt tgctaacccg actgcactgg ctgagctgag cattcaggtt gtgaagaagg
     2281 cagagaataa ctgatatgac tcaaatacac gaaatcattc gcgttgcatc aaggcggcaa
     2341 ttgagtgaac tcccatgagc atagataact atgtgaatgg gatgagcgaa ggcagtcaac
     2401 gaagaggcag cgtgaaggat aaagtgtata agcgtcccgt ttcgatctta gtggtcatct
     2461 atgcacaaga tacgaaacgg gtgctgatgt tgcagcggcg tgacgatccc gatttctggc
     2521 agtcggtaac cggcagcgtg gaagagggtg aaaccgcgcc gcaagctgcc atgcgcgaag
     2581 taaaggaaga ggtcaccatt gatgttgtcg ctgaacaact gaccttaatt gacagtcagc
     2641 gcacggtaga gtttgaaatt ttttcacatt tacgtcatcg ctatgcgccg ggcgtgacgc
     2701 gtaatacgga atcatggttc tgtcttgcgc ttccgcacga gcggcagatc gttttcactg
     2761 aacatctggc ttacaagtgg cttgatgcgc ctgctgcggc ggcgctcact aagtcctgga
     2821 gcaaccggca ggcgattgaa cagtttgtaa ttaacgctgc ctgaacaggc agggctatct
     2881 ggagatattt ttatggcagg tcatagtaaa tgggccaaca ccagacatcg taaagctgcg
     2941 caggatgcta agcgcggtaa aatcttcact aaaatcattc gtgagctggt aaccgcggct
     3001 aagctgggcg gtggcgatcc ggacgctaac ccgcgtctgc gtgcggcggt ggataaagca
     3061 ctgtctaaca acatgacccg tgacacactg aaccgcgcaa ttgcacgtgg tgtgggcggt
     3121 gatgatgatg caaacatgga aaccatcatc tacgaaggtt acggtcctgg cggcacggca
     3181 atcatgattg aatgtctgtc tgacaaccgc aaccgtaccg ttgctgaagt gcgtcatgca
     3241 ttcagcaaat gtggcggtaa cctcggtaca gatggttccg tagcctatct gttcagcaaa
     3301 aaaggcgtga tcaccttcga gaaaggcgat gaagacacca tcatggaagc agctctggaa
     3361 gcaggtgctg aagacgttgt gacctatgat gacggcgcga ttgatgtcta cactgcatgg
     3421 gaagaaatgg gtaaagtgcg cgacgctctg gaagcggcag gtctgaaagc agacagcgcg
     3481 gaagtttcca tgatcccgtc caccaaagct gatatggatg cagaaaccgc accgaaactg
     3541 atgcgtctga tcgatatgct ggaagattgc gacgacgtgc aggaagttta ccataacggt
     3601 gaaatctctg atgagattgc agcgactctc tgatgaggcc tgctaaacag caaaacggag
     3661 acgcgtgatg gctattattc tcggcattga cccgggttcg cgcgtgaccg gctatggcgt
     3721 catccgccag gtaggcaggc aactgtccta cctgggtagc ggatgcatac gcaccaaggt
     3781 ggatgattta ccgtctcgtc tgaagctcat ctatgcgggc gtgacggaaa tcatcaccca
     3841 gttccagcca gattatttcg ccattgaaca agtctttatg gccaaaaatg ccgactcggc
     3901 tctgaaactg gggcaggcgc gcggcgtggc gattgtggcg gcggtgaatc aggaattgcc
     3961 ggtatttgaa tatgcggcac gtcaggtaaa gcaaacggtg gtaggtattg gtagtgccga
     4021 aaaaagtcag gtgcagcata tggtccgcac cttgctgaaa ctgcccgcta atccacaggc
     4081 ggatgccgcc gatgcgttag ctatcgcgat tacccattgt cacgtcagcc agaatgcaat
     4141 gcagatgagc gaatcgcggc tgaacctggc gagagggcga ctgcgttaag ttataccgcc
     4201 tcggtcagtt caggctgagg cgtttcaact ccctccgcgt gaatcaacac caaacccgga
     4261 tgatgc
//
LOCUS       DAJVUP010000236         4259 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.237, whole genome shotgun sequence.
ACCESSION   DAJVUP010000236 DAJVUP010000000
VERSION     DAJVUP010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.237"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..153
                     /locus_tag="OQQ75_004033"
     CDS             <1..153
                     /locus_tag="OQQ75_004033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS1978175.1"
                     /translation="IVELGKAIDFDARTAIPFEGERHNALDDARYQAKYVSAIWQKLI
                     PSQADF"
     gene            212..415
                     /locus_tag="OQQ75_004034"
     CDS             212..415
                     /locus_tag="OQQ75_004034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HCS1978176.1"
                     /translation="MSSLFLTEDELLILTGCKYASHQRKWLMENELPFYTNRSGKPIV
                     SRDLFTCNKTLPPREVEPNFGAI"
     gene            415..1440
                     /locus_tag="OQQ75_004035"
                     /pseudo
     CDS             415..1440
                     /locus_tag="OQQ75_004035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105555.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(1468..1557)
                     /locus_tag="OQQ75_004036"
     tRNA            complement(1468..1557)
                     /locus_tag="OQQ75_004036"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1521..1523),aa:Ser,seq:cga)
     gene            1651..2448
                     /gene="mtfA"
                     /locus_tag="OQQ75_004037"
     CDS             1651..2448
                     /gene="mtfA"
                     /locus_tag="OQQ75_004037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgsA anti-repressor MtfA"
                     /protein_id="HCS1978177.1"
                     /translation="MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAE
                     RFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDE
                     WEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGD
                     RASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSE
                     YFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH"
     gene            2549..2624
                     /locus_tag="OQQ75_004038"
     tRNA            2549..2624
                     /locus_tag="OQQ75_004038"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2582..2584,aa:Asn,seq:gtt)
     gene            2938..4259
                     /locus_tag="OQQ75_004039"
                     /pseudo
     CDS             2938..4259
                     /locus_tag="OQQ75_004039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416485.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta domain-containing
                     protein"
BASE COUNT         1193 a          978 c         1005 g         1083 t
ORIGIN      
        1 atcgttgagc tggggaaagc catagacttc gatgccagaa cggctattcc attcgaaggt
       61 gagcgccata atgcacttga tgacgctcgt taccaggcaa aatacgtttc agctatctgg
      121 caaaaactga tcccgagtca ggctgatttt taatgttcaa ccctaattgc cgctaaccgt
      181 atatagttag cggcggttat gagatatagc tatgagcagc ttatttttaa ccgaagatga
      241 attgctaata ttaacgggct gcaaatatgc aagccaccag cgaaaatggt taatggaaaa
      301 cgagcttccg ttctatacca atcgtagtgg caaaccgatt gtcagccggg atctatttac
      361 ctgcaataaa actttaccac cacgcgaggt agagccgaat tttggtgcga tctgatggga
      421 agacgaagga aaaatcctga gcacgaaaaa ttacctccaa atgtataccc aaataaatat
      481 agttatgtat ggaaaccaac atccagcgaa tctgtaacac taaccgccat caaggatggt
      541 ttagctgctt tatggaaaaa gtatgaggaa actgtaaata atcgcgatcg tgcaatgaca
      601 ttcggtcgct tgtgggaaaa attcctcgcc agcgcctatt acagtgacct cagtccaaga
      661 acacaaaaag attatctgca acatcaaaaa agttgcttgc cgtattcggt aaggtgccgg
      721 cagattccat aaaaccagaa cacatccgtc gatacatgga caagagaggg gaacagagta
      781 aaacgcaagc caaccatgaa gtcccgcgtt tacagttggg ggtatgagcg agggtacgtg
      841 aaggctaacc catgtgcagg tgtaagtaaa ttcaaggcca aaaaccgcga acgatatgta
      901 accgacaaag aataccaggc agtattaagc gttgcacctc ttcctgtttt tatcgcaatg
      961 gaaattgcct atctgtgtgc agcgagggtt tccgatgtgt tatcgctgaa atgggagcag
     1021 attggaaacg acgggatctt tatccagcaa gggaaaacag gaaaaaaaca gataaaagca
     1081 tggagtccac gattacaggc ggcgatcgaa aaagcaaaac agttaccaac atccgcctat
     1141 gtaatcagca atcaatacgg caaccgatat atgtacaaag gctttaacga aatgtgggta
     1201 gaagcaagaa atcgcgcagg caaaatttca ggtattttaa ccgacttcac ctttcatgat
     1261 ctgaaggcga aaggaatttc agactatgaa ggaagcagtc gggataagca acttttctct
     1321 ggtcacaaaa ccgaggggca agtgctaatc tatgacagga aggttaaagt ttcaccgaca
     1381 cttgatgtcc cgttacctga aaatattcca agtaattcca cgtgtgattt ttgtcactga
     1441 cttaatgatg tataagtgat tgaattttgg cggagagagg gggatttgaa cccccggtgg
     1501 agttgccccc actccggttt tcgagaccgg tccgttcagc cgctccggca tctctccgtt
     1561 cagatggttg ccatgatgcc aggaaatttg gcattttaac agtccctgtc cgtgcaattt
     1621 tgttcaagtg acgagtttgc gagcaaaacg atgattaagt ggccctggaa agtacaagaa
     1681 tcagcacatc aaactgccct tccctggcag gaagcactat cgatccccct tttaacgtgt
     1741 ctgacggaac aggaacaaag caaattagtc actcttgccg aacgtttttt acagcaaaag
     1801 cggcttgttc ctttacaggg ctttgaactg gattcattaa gaagctgccg gatagcactt
     1861 ctattttgcc tacccgttct ggagttagga ctggaatggc tggatggttt tcatgaagtc
     1921 ttaatttatc ctgcgccatt tgtggtcgat gatgaatggg aagacgatat cggtctggtg
     1981 cataaccaac gtattgttca gtcaggtcag agctggcagc aagggcctat cgttttgaac
     2041 tggttggata tacaagattc ttttgatgct tctggtttta acctgattat tcatgaagtc
     2101 gctcataagc tggacacccg taacggcgat cgcgccagcg gagttccctt tattccgttg
     2161 cgtgaggttg ctggctggga acacgatctt catgctgcaa tgaacaacat tcaggaagaa
     2221 atcgaattgg ttggcgagaa tgcggcgagc attgatgctt atgcagccag cgatcctgct
     2281 gaatgttttg ccgtactttc tgaatatttc tttagcgccc cagaactttt tgctcctcgt
     2341 ttcccttcat tgtggcaacg tttctgccaa ttttatcaac aagatccttt gcagagactg
     2401 catcacgcta atgatacaga ctcgttttcg gcgacgaatg ttcattaatt aacaactttg
     2461 catattaatt aaccaattga aatgacttat gaaatttagt gttgacagac aaggtaccgc
     2521 taagtaatat gcgccccgtt cacacgattc ctctgtagtt cagtcggtag aacggcggac
     2581 tgttaatccg tatgtcactg gttcgagtcc agtcagagga gccaaattct aaaaattcgc
     2641 ttttttagcg caatgtcact gaccttagtt gaacattgtt ttttaacgga tagcgggttt
     2701 ttaacatctt aagcgccctc gacctttatg gttgagggcg ttttgctatg aacgccatca
     2761 ccattttccc ctcgattata aaacttgagt tattcagtag tctcccctct tgcaactcac
     2821 acccaaaact gcctaacgaa aagttattaa ttttcaatca tattgctatc agtatttaca
     2881 ttttttcgct gtgctagaaa gggcgcattt atgttagctc gttcagggaa ggtaagcatg
     2941 gctacgaaga agagaagtgg agaagaaata aatgaccgac aaatattatg cgggatggga
     3001 attaaactac gccgcttaac tgcgggtatc tgtctgataa ctcaacttgc gttccctatg
     3061 gctgcggcag cacaaggtgt ggtaaacgcc gcaacccaac aaccagttcc tgcacaaatt
     3121 gccattgcaa atgccaatac ggtgccctac atccttggag cgctggaatc ggcccaaagc
     3181 gttgccgaac gtttcggtat ttcggtggct gagttacgca aactcaacca gtttcgtacg
     3241 tttgctcgag gttttaataa tgtccgccag ggtgatgaac tggatgtccc ggcacaagtt
     3301 agtgaaaaaa aattaacccc gccgccgggt aatagcagtg acaacctcga gcaacagata
     3361 gccagtactt cacagcaaat cgggtctctg ctcgccgaag atatgaacag cgagcaagcg
     3421 gcaaatatgg cgcgtggatg ggcctcttct caggcttcag gcgcaatgac agactggtta
     3481 agccgcttcg gtaccgcaag aatcacgctg ggcgtggatg aagattttag cctgaagaac
     3541 tcccagttcg attttctcca tccgtggtat gaaacgcctg ataatctctt tttcagtcag
     3601 catactctcc atcgtactga cgagcgtacg cagattaaca acggcttagg ttggcgtcat
     3661 ttcactccca catggatgtc aggcatcaac ttctttttcg accacgatct tagccgttac
     3721 cactcccgcg ccggcattgg cgcggagtac tggcgcgact atctaaaatt aagcagtaac
     3781 ggctatttgc gactgaccaa ctggcgcagc gcacctgaac tggacaacga ttatgaagca
     3841 cgcccggcca atggctggga tgtacgcgca gaaagctggc tacccgcctg gccgcacctt
     3901 ggcggtaaac tggtctatga acagtattat ggcgatgaag tggccctgtt cgataaagac
     3961 gatcggcaaa gtaatcctca tgccataacc gctggactta actatacccc cttcccgctg
     4021 atgaccttca gcgcggagca acgctagggt aaacagggcg aaaatgacac ccgttttgcc
     4081 gtcgatttta cctggcaacc tggcagcgca atgcagaaac agcttgaccc gaatgaagtc
     4141 gctgcacggc gtagccttgc aggcagccgt tatgatctgg tggatcgcaa caacaatatc
     4201 gttctggaat atcgcaaaaa agaactggtt cgcctgaccc tgacagaccc cgtgacagg
//
LOCUS       DAJVUP010000237         4200 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.238, whole genome shotgun sequence.
ACCESSION   DAJVUP010000237 DAJVUP010000000
VERSION     DAJVUP010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4200
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.238"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(62..724)
                     /gene="exoX"
                     /locus_tag="OQQ75_004040"
     CDS             complement(62..724)
                     /gene="exoX"
                     /locus_tag="OQQ75_004040"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HCS1978178.1"
                     /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPIS
                     PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL
                     ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ
                     MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWSFNNLDSMSPELRLTLKHYLE
                     NT"
     gene            complement(748..1404)
                     /locus_tag="OQQ75_004041"
     CDS             complement(748..1404)
                     /locus_tag="OQQ75_004041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HCS1978179.1"
                     /translation="MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPS
                     LSLLACDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPW
                     RKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
                     LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
                     "
     gene            complement(1506..1736)
                     /gene="holE"
                     /locus_tag="OQQ75_004042"
     CDS             complement(1506..1736)
                     /gene="holE"
                     /locus_tag="OQQ75_004042"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit theta"
                     /protein_id="HCS1978180.1"
                     /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ
                     PEHLRSWFRERLIAHRLASVKLSRLPYEPKLK"
     gene            1875..2249
                     /gene="yobA"
                     /locus_tag="OQQ75_004043"
     CDS             1875..2249
                     /gene="yobA"
                     /locus_tag="OQQ75_004043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopC domain-containing protein YobA"
                     /protein_id="HCS1978181.1"
                     /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA
                     PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT
                     VDWHVVSVDGHKTKGHYTFSVK"
     gene            2253..3120
                     /gene="copD"
                     /locus_tag="OQQ75_004044"
                     /pseudo
     CDS             2253..3120
                     /gene="copD"
                     /locus_tag="OQQ75_004044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416354.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis membrane protein CopD"
     gene            3133..3474
                     /locus_tag="OQQ75_004045"
     CDS             3133..3474
                     /locus_tag="OQQ75_004045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebY family protein"
                     /protein_id="HCS1978182.1"
                     /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV
                     MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSL
                     APFIERAEKLC"
     gene            complement(3856..>4200)
                     /locus_tag="OQQ75_004046"
     CDS             complement(3856..>4200)
                     /locus_tag="OQQ75_004046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001189081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1978183.1"
                     /translation="SLSLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPD
                     GLTKKFVAARKLTGIQFSENPPTFHEVRSLAGRLYKETCGEEFAQRLLGHTSEKTTKM
                     YLDEREKTYLLL"
BASE COUNT         1045 a         1016 c         1039 g         1100 t
ORIGIN      
        1 cgatggaata tgcttttctg gtcgcgctgg cgcagggaac attacccgct acgcctgcgg
       61 attaagtatt ttccagataa tgtttcagtg ttaaacgcag ctccgggctc atgctgtcca
      121 ggttattaaa tgaccagcgc agatagcccg gatcgcgttc ggcaacgtcg gaaaccgctt
      181 tgccacggta tttgccaaag gtgaaggtcg tcatcaacga cggacgtccg gtgatatcgg
      241 ccatctgttc tgccgtccag ccggaggtgt tcataatatc gataagcaac gcggcggtga
      301 tataacagtc atacaacgcg cggtgatgat gcaggcccgg cggcgtctgt acattgagct
      361 tccgtgtttt atataacgcc atattgctgt acttgatccc tggccacaaa cgacgggcca
      421 gtttcatagt gcaaatccac tcaccgggca tctcaggcag tacgcggcgg tcaaagctgg
      481 cgttgtgcgc gacataccat tcactaccgt aatagtgtgg gatcacatct tcaatccacg
      541 gtttatcggc gaccatggct tcggtgatgc gatgaatcgc catcgcttgt ggactaatag
      601 gacgatcggg gcgcaccagg tggctcatgg ggttgacgat ttttccgtca atgacatcaa
      661 cagaggcaat ctcaacgatc cctccctgca aaccgcaggt ttctgtatcg ataatgcgca
      721 acatggcatg ctccaggccg aaaaagccta gcgtaatgga atgatatcgc cttgccaacc
      781 ctgtgatgaa cgctgaccga ctaacaataa tgaaccacga tcggcgcgaa cgatgagacg
      841 accatattca tcccatagtg cactgttacc acgggcattt gccatcagca cggcaatcga
      901 gtactgatgt gaaaaaaatt gtaagcgacg ggccgacgcc agcaggtcgg gttctcccag
      961 acattgccct gtagtaaaca gtgaacaggt cgggtccata tccatacctt gcggttgttc
     1021 atcgaccacc gtgatggttc tggaacgacg gcccagacat gcaccatgac tctgatggta
     1081 gatcccaggc gtttttcgcc acggtgcgaa caccgcaatt ccacgaataa agcgatcgtt
     1141 atattcaacg ggaaggccgg caatgatggt cattcgccag gtcgttgcgg cataacaaag
     1201 cgggtctaac agtgagagat cgggtggggc aggaagggca cgtcgcgaat aatcacacgc
     1261 cagtaaagaa agcgatggaa aaactaacag ctgacattgt tgcctggcgg cggccctcac
     1321 aaactccaga tgatgagcta cctgttcggt gagtgaggtt ttacgaggct catattgcgc
     1381 tgctgcaact ttccagaacg acataatgac ttccttttca aaatgactgc aaattatggg
     1441 tgcggtttag aaaatactca taatttagca ggcgttatgt aagaaagtgt aactctgtat
     1501 aagttttatt taagtttggg ctcgtaaggt aaacgtgaca gtttgaccga agccaaacgg
     1561 tgggcaataa gcctctcgcg aaaccagctg cgcaaatgtt caggctgttc acgttcaacc
     1621 gcttcagcga tcaccggcat attgtagcgt tctttaaatg ccaccccggc cgccgccaaa
     1681 tcgacattca ctttatccat ttctgtttga tccagtttag ccagattctt cagcattctt
     1741 aatctcctca tcattcgcgg gcaaaagtta ctaagagtga gccaggatgg caagccggaa
     1801 ttgatgatcc tcgactcaga cattagacaa ggttatgctc tgtaaaaaag ttattacaaa
     1861 aagtaataga taatatggct tcaactgcac gctcccttcg ctacgcgctg gcaatcctga
     1921 ccacttcgtt ggtgacacct tccgtctggg cacatgcgca tttaacgcat cagtatcctg
     1981 cggcaaacgc gcaagtgaca gctgcaccgc aggcaatcac tttaaacttc tcggaaggtg
     2041 ttgaaacagg attcagtggt gcaaaaatca cggggccaaa aaacgaaaat attaaaacat
     2101 taccggcgaa gcgaaatgag caggaccaaa agcaactgat tgttccactg gccgattcgc
     2161 tgaaacccgg aacctacacc gttgactggc atgttgtttc ggtggacggg cataaaacga
     2221 aaggacacta cacctttagc gtgaaataaa tcatgctggc gtttacctgg atcgcgctgc
     2281 gatttatcca tttcacctcg ctgatgctgg tttttggctt cgcaatgtac ggtgcctggc
     2341 tggccccctt gacgattcgt cgcttgctgg cgaagcgttt tctgcgttta caacagcacg
     2401 ctgccgtctg gagtttgatc agtgccactg caatgctcgc cgttcagggc gggttgatgg
     2461 gaacgggatg gacagatgta ttttcgccaa acatttggca ggctgttttg caaacgcagt
     2521 ttggtggcgt ctggttatgg caaattgttc tcgccctcgt aacgttgcgc ccttatgcaa
     2581 ccgcggaata tgccacgttt gctgtttatg ctcactaccg cgcaatttat tctgctggcg
     2641 ggagtggggc atgcgacgct gaatgaaggg gtaacggcga aaatccatca gactaatcac
     2701 acgattcacc tgatttgtgc ggcggcgtgg tttgggggat tactgccggt gctctggtgt
     2761 atgcaactca tcaaaggccg ttggcgacac caggctattc aggcgctgat gcgtttttca
     2821 tggtgcgggc attttgcggt gatcggcgta ctggcaagcg gggtgcttag tgcattgttg
     2881 attaccggat ttccccccac gcttacgact tactggggcc aactcttatt gctcaaagcc
     2941 atcctggtga tgattatggt ggtcattgcg ctggctaatc gttatgttct tgtaccgcgc
     3001 atgaggcagg atgaagatcg tgcggcaccc tggtttgtgt ggatgactaa actcgaatgg
     3061 gcgataggtg cggtagtgct ggtgatcatc agcctgcttg cgactctcga acctttttga
     3121 tggattacga aaatgatgaa aaaaagtatt ctggcgtttc tgttactcac cagttctgca
     3181 gcggcgctgg ctgcaccgca ggtgattacc gtcagtcgtt ttgaagtggg taaagacaaa
     3241 tgggcgttta atcgcgaaga ggtgatgctg acttgccgac cgggtaatgc tttgtatgtt
     3301 attaatccga gtaccctcgt gcagtatcct ttaaacgata tcgcacaaaa ggaagttgcc
     3361 agtgggaaga ccaatgccca acccatttcg gtgattcaga ttgatgatcc taacaatccc
     3421 ggcgaaaaaa tgagtctggc accgtttata gaacgagctg aaaaactctg ttaattacct
     3481 aaaatagcct tttgatttcc aataaaaaaa ccgcctcagt tctttcacca gaacgggcgg
     3541 ttttaacatt tcagctgatg accaccacgc tttttattga ccattttgca cgcaaactgg
     3601 aaaacctggc gtcgtcatct attcttaaag ggcaaggcaa ctaagcctgc attaatgcca
     3661 acttttagcg cacggctctc tcccaagagc catttccctg gaccgaatac aggaatcgta
     3721 ttcggtcttt ttttaattgc atttgaaatc aattagttgc aaatgtctcc ccgaaattta
     3781 ctcgaatttc tgtattccgg tcttttttgg ttatatcaca accaaaatac atttaacaat
     3841 ccatttacgt taaaatcaga gcagtaagta cgttttttct ctctcatcaa gatacatttt
     3901 tgttgtcttc tccgatgtgt ggccaagtag acgctgagca aattcttctc cacatgtttc
     3961 tttgtacaat cgtccagcca ggcttctgac ttcgtgaaaa gttggtgggt tttcactgaa
     4021 ctggatacct gttaattttc tggctgcgac aaatttcttt gtcaggccgt ccgggtgaat
     4081 gctgccgtca gggctgtttt ttctaatccc ggcactgatt agataatccc ccctacttac
     4141 catgcggcac tgttcaacta ctgcaccaag tcgtaaacca gcgacaggaa ggctgagtga
//
LOCUS       DAJVUP010000238         4179 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.239, whole genome shotgun sequence.
ACCESSION   DAJVUP010000238 DAJVUP010000000
VERSION     DAJVUP010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4179
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.239"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            29..778
                     /locus_tag="OQQ75_004047"
     CDS             29..778
                     /locus_tag="OQQ75_004047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000093946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1978184.1"
                     /translation="MSSFLLGRFLHPGVFSLCVLLPLLASATTSHISFSYAARQRMQN
                     RARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQA
                     LVENNHFLSSNHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILE
                     AKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRT
                     GETIRVSRLAEPFWQDHFLGARWILTEETIL"
     gene            954..1451
                     /gene="rayT"
                     /locus_tag="OQQ75_004048"
     CDS             954..1451
                     /gene="rayT"
                     /locus_tag="OQQ75_004048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="REP-associated tyrosine transposase RayT"
                     /protein_id="HCS1978185.1"
                     /translation="MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRNAIIKVKR
                     DRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHA
                     IRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAG
                     ERIIL"
     gene            complement(1675..3387)
                     /locus_tag="OQQ75_004049"
                     /pseudo
     CDS             complement(1675..3387)
                     /locus_tag="OQQ75_004049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001140833.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
     gene            3359..4144
                     /gene="lafU"
                     /locus_tag="OQQ75_004050"
     CDS             3359..4144
                     /gene="lafU"
                     /locus_tag="OQQ75_004050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lateral flagellar export/assembly
                     protein LafU"
                     /protein_id="HCS1978186.1"
                     /translation="MTTIKLIVNSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSH
                     PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEME
                     IVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHIDAMA
                     YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRI
                     EIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRTR"
BASE COUNT          966 a         1124 c         1121 g          968 t
ORIGIN      
        1 accttcattc agccggttta tgtccttcat gtcttcgttc ttgctcggca gatttctgca
       61 tccaggcgtg ttttcgttat gcgttttgct ccctttactc gccagcgcca ccacatcaca
      121 tatctctttc agctacgccg cccgccagcg gatgcaaaac cgtgcgcgtt tattaaaaca
      181 gtaccaaacc catctgaaaa aacaggccag ctacattgtg gaaggcaatg ccgaaagcag
      241 aagggcgcta cgccagcaca accgggagca gataaaacag catccagaat ggtttcctgc
      301 gccgctcaag gcaagtgaca gacgctggca ggcgttggta gaaaacaatc atttcctcag
      361 cagcaaccac ctgcataata tcaccgaagt ggcgattcac cgtctggagc aacagcttgg
      421 caagccttac gtctggggcg gcacgcggcc cgatcaaggc ttcgactgta gcgggttggt
      481 tttttatgcc tacaacaaga tccttgaggc taagctcccg cgcacggcta atgagatgta
      541 tcactaccat cgggcaacca ttgtggcaaa taacgacctg cgccggggag atttgctgtt
      601 tttccatatc cacagccgtg aaattgccga ccatatgggc gtgtatctgg gagacggtca
      661 gtttattgag tcgccgcgca cgggggaaac cattcgggta agtcggttag ctgaaccttt
      721 ctggcaggat cattttttgg gcgcgcggtg gatattgacg gaagagacga ttttgtagga
      781 cggataaggc gtttacgccg catccggcgg tggtgcgcag atgcctgatg cgacgctgac
      841 gcgtcttatc atgcctacaa atctgtgcgt ttttgcgagc cgctttcctg ttattccatc
      901 acctcattgc cgacctttcc ttttcttctt accgttgaga aaaaggagtc gccatgtctg
      961 aatatcgtcg ttattacatc aaggggggaa cctggttttt cacggtgaat ttacgcaatc
     1021 gtcgaagcca actcttgacc acccagtacc agatgctccg taacgccatt attaaagtta
     1081 agcgagacag gccttttgaa atcaacgcct gggtcgtttt gccagagcat atgcattgca
     1141 tatggacatt acctgaaggc gatgatgatt tttcctctcg ctggcgggaa attaaaaagc
     1201 aatttaccca tgcttgtgga ttgaaaaata tctggcaacc acgtttttgg gagcacgcca
     1261 tccgcaatac caaagattat aggcatcatg ttgattatat ttatataaat ccagtaaagc
     1321 atggttgggt aaagcaagtg agtgattggc cattctcaac gttccatcgc gatgtcgcgc
     1381 gagggttata tcccatcgat tgggcggggg acgtaacgga tataaatgct ggcgagcgta
     1441 tcattttata attatgcgca gatgcctgat gcgacgctgg cgcgtcttat catgcctaca
     1501 aacctgtgcc ggatcggtag gccggataag gcgtttatgc cgcatccggc ggttatgcgc
     1561 agatgcctga tgcgacgctg gcgcgtctta tcatgcctac aaacctgtgc tggatcggta
     1621 ggccggataa ggcgttcacg ccgcatccgg cagttgtgca ccaatgctgg atacttacat
     1681 caacgccccc ataatcttca actccagctc gtccggcact tcgttatacg acagcacatg
     1741 cagccccggc gcaaacaacc ttgcataacg cgccagcaaa gggcgcagct gcggtggcac
     1801 cagcagcacc gggtctttcc ccgccgcttt catctgctct ttcacctgtg gcatcgtact
     1861 ctggaactgg ttgagcatat tcgggtccac tggcacgctg tcgagcatca ctttaccgcc
     1921 ctgttgcgcc tgattcacta ggttagtcag cagattttcc agctcattat tcagggtata
     1981 caccgtcagc tcctgcttgc gaacgaacgg atgggtaatg ctgcgccgca gcgccaggcg
     2041 cacatcggct gccagcagaa tatgatcttt ggtcaccgcg ctactggcga ccagcacggt
     2101 ggcgatggtg acgatatcgc gcagggaaac gccttcggtc agcagcgccc ggtacacttt
     2161 cagcaactgg ctgtaattga gcaccgcgct taaatcctcc gccaggcgcg gtgccatcga
     2221 cgacaaacgg ttatgcaact gcgtaatatc gtcatagtta aataaatcag gaatatagct
     2281 gcgcacaatc ttatttacat gggtagcaat cacgctggcg ctgtcgatca cctgataccc
     2341 catattcagc accttcgctt tctgcgcagg ctggatccag gtcaccggca tcccgtacgc
     2401 cgggtcgttc cccagcacgc cgtctatctc gccgtaggtt tcgctggagg gctgggccat
     2461 cagtttatcc gccggaatat ccgcttcatc agccttaatg ccgttgatga aaatagcgta
     2521 ctggctgggc ttaaggcgga agttttcccg aatgcggatc tccggcagca gcacgccgtt
     2581 gccgtcggat atcacctgtc gcacgccgcg aatacgctgg gtgagcgggt tgccctgggc
     2641 tttatcgacc agcgccacca gcttgtagcc gaggcttaaa ctgataggct cgataagcgg
     2701 aatggtttcc caactgacct gttgctcgct ggtttcggtg atggtgcggg tcagcgtttc
     2761 gagacttttc tcttccgctt ccgccgcctg cgggcgtttg ctcatccgcc agccggtaaa
     2821 gccaagcagg gcgctgaaca gcaaaaacgg cagatgtggc attcccggca ctaccgccag
     2881 tacgaacata attccggtag cggtgtagag caccgatggg cttgccagca actggttacg
     2941 cacgtcatgg gcgatatcgc cgttgtcgct gacgcgggtg aggataatcg ccgccgcggt
     3001 ggagagtagc agggaaggga tttgcgccac cagcccgtcg ccgatggtca tcagcacata
     3061 ctgctggaag gcggcgtcgg cgctcaggtt gtatttgaag atcccgatac agacgccgcc
     3121 gatcaggttg atcgccagaa tcatcatccc ggcgatagca tccccgcgca caaatttcga
     3181 tgccccgtcc atcgcgccgt agaaatcggc ctcgctggca acatctttac gtcgggtttg
     3241 tgcctgcgcc tgattgatca acccggcatt aagatcggcg tcaatcgcca tctgcttacc
     3301 gggcatcgca tccagggtaa agcgggctga aacctcggaa atacgctcgg cccctttggt
     3361 gacgacgata aagttgattg tcaacagcgt cagtaaatcc gagcgtgaaa gcattatcgc
     3421 cgcgctgcac gggcagtcga tttttaacgg tggtgggctg tcgccgttaa ataaaatcag
     3481 cccgtctcat ccgccaaaac ctgccaccgt ggcggtgccg gaagaaacgg agaaaaaagc
     3541 gcgcgacgtc aatgagaaaa cggcgctgct gaagaagaaa tccgccaccg agcttggcga
     3601 gctggcaacc agtatcacca ccattgcccg tgatgcgcat atggaagcga atctggagat
     3661 ggagattgtt ccccagggat tacgcgtgct gattaaagac gaccagaatc gcaatatgtt
     3721 cgaacgcggc agcgcgcaga ttatgccgtt ctttaaaacg ctgctggtgg agctcgcgcc
     3781 agttttcgac tcgctcgata acaaaattat tattaccggg catatcgatg cgatggctta
     3841 caaaaacaat atctacaaca actggaacct ttcgggtgac cgcgcgcttt cggctcgtcg
     3901 ggtgctggaa gaggccggaa tgccggaaga taaagtgatg caggtaagcg caatggcgga
     3961 ccagatgctg ctggattcca aaaatccgca aagcgcgggc aaccggcgca ttgagattat
     4021 ggtgctgacc aaaagtgcgt ccgatacgct gtatcaatac tttggtcagc atggggataa
     4081 agtggtgcag ccgctggtgc aaaagctgga taagcagcag gtgctttcgc agcgaacgcg
     4141 ttaaatgctg aatctttacg catttctcaa actctgaaa
//
LOCUS       DAJVUP010000239         4111 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.240, whole genome shotgun sequence.
ACCESSION   DAJVUP010000239 DAJVUP010000000
VERSION     DAJVUP010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.240"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(953..1144)
                     /locus_tag="OQQ75_004051"
     CDS             complement(953..1144)
                     /locus_tag="OQQ75_004051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1978187.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDH
                     ADELYRSCLARFGDDGENL"
     gene            1209..1532
                     /locus_tag="OQQ75_004052"
     CDS             1209..1532
                     /locus_tag="OQQ75_004052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HCS1978188.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGRLPT
                     LAPPLLRQLAAIGNNLNQAARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQG
                     TRDDS"
     gene            1474..2232
                     /locus_tag="OQQ75_004053"
                     /pseudo
     CDS             1474..2232
                     /locus_tag="OQQ75_004053"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2210..2740
                     /locus_tag="OQQ75_004054"
     CDS             2210..2740
                     /locus_tag="OQQ75_004054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="HCS1978189.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVSKAVTSN
                     ETKIKDAIALFTASTEESLKKHREGVKEAMMQHRKDVLKLAGNTGMMLLGMVIFLFTV
                     SGGTLWYLGGMIQANLEEIRKQNESLEKLNAKTWGVRYHEGSNGRFLVLPEGMKAETN
                     WTMENGKQNAVRLVQE"
     gene            2747..2980
                     /locus_tag="OQQ75_004055"
     CDS             2747..2980
                     /locus_tag="OQQ75_004055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HCS1978190.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDN
                     AMLNEQVMQLSQQVQHLSERTERLSQLYSENRR"
     gene            complement(3528..3995)
                     /locus_tag="OQQ75_004056"
     CDS             complement(3528..3995)
                     /locus_tag="OQQ75_004056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978191.1"
                     /translation="MRIDISHQTRHTPPNMLPREQNCVAMALSACFRQQLNPVVNSLL
                     KERIIHSPKELEHDNAVIRALQKLQIQEVCNSTLWETAKQQLLQKSDGRYFAINSKHL
                     AFPGPGESHAFCCIKYKNAIGINGNNAETQSTHYQPYPYDKVSIWGPFPHNLT"
BASE COUNT          982 a          933 c         1227 g          969 t
ORIGIN      
        1 aaaaaaacca ccgctaccaa cggtggtttg tttgccggaa tctagagcta ccaactcttt
       61 cttccgaagg taactggctt ggtggagcac agataccaaa tgctgtcctt ctagtgtagc
      121 cgcagttagg ccaccacttc aagaactctt aatatctcaa tccaccttgt acagttacca
      181 atggctgctg ccagtggcgt taagtcgtgt cttaccgggt tggactcaag acgatagtta
      241 ccggatgagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag
      301 cgaacgacct acaccgaact gagataccta cagcgtgagc tatgagaaag cgccacgctt
      361 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc
      421 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac
      481 ctctgactag agcgtcgatt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac
      541 gccatcggcg cggccttctt cctgttcctg gtcttttgct cacatgttct ttccggcgtt
      601 atcccctgat tctgtggata accgcatttc gtttttgagt gagtagatac cgctcgccgc
      661 agtcgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaaaagcg cctggacgtg
      721 cattttctcc ttacgcatct gtgcggcatt tcacacccgg tatggcgcac ttttcataca
      781 atccgcattg atgccgcatg gtgaagccag tatacactcc gctatcgcta cgtgactggg
      841 tcatggctgc gccccgacac ccgctaaaac ccgctgacgc gccctgacgg gcttgtctgc
      901 tcccggcatc cgctcacaga taagctgtga ccgtctccgg gagctgcatg cgtcagaggt
      961 tttcaccgtc atccccgaag cgagcgaggc aactgcggta aagctcatcg gcgtggtcgt
     1021 gaagcgattc acagatgtct gcctgttcat ccgcgtccag ttcgttgagc ttctccagca
     1081 gcgttaatgt ctggcttctg ataaagcggg ccatgttaag ggcggttttt tcctgtttag
     1141 tcactgatgc ctccgtgtaa gggggatttc tgttcatggg ggtaatgata ccgatgaaac
     1201 gcgagaggat gctcacgata cgggttactg atgatgaaca tgctcgtttg ctggaacgtt
     1261 gtgagggtaa acaactggcg gtatggatgc ggcgggtctg cctgggggag ccggttgccc
     1321 gttccgggag gctgccgaca ctggcaccgc cgttactgcg tcagctggcc gccatcggga
     1381 ataacctgaa tcaggcagcg aggaaggtga acagcgggca gtggtcttcc ggtgaccggg
     1441 ttcaggtggt ggccgcactg atggccatcg gggatgagct gcgccggctg cgtctggccg
     1501 tcagggaaca ggggacgcgg gatgatagtt aagtttcatg ccaggggaaa aggtggtggc
     1561 agtggtccgg ttgattacct gctgggaagg gagcgtaacc gggaaggggc aacggtgctt
     1621 cagggtaatc cggaagaagt ccgggaactc atcgatgcca cgccatttgc gaagaaatac
     1681 acgtccggtg ttctctcgtt cgcggagaag gcgctgccag cgggaggacg tgaaaaagtg
     1741 atggcgagtt ttgagcgtgt actgatgccc ggtctcgaaa aaaatcagta cagcatcctg
     1801 tgggtggagc accaggacaa gggacggctt gagctgaatt ttgtcattcc gaacatggag
     1861 ctacagaccg gaaaacgcct ccagccgtac tacgaccggg cagacaggtc gagaattgat
     1921 gcctggcaga cgctggtgaa tcaccattac gggctgcatg acccgaacgc cccggagaac
     1981 cgccggacgc tgactctccc tgataacctg ccggaaacga aacaggcgct tgctgagagc
     2041 attacacggg ggatagacgc tctttatcat gtcggggaga taaaagaccg tcaggatgtg
     2101 attcaggcgc tcacagaggc ggggcttgaa gtggtcaggg tgacgcgaag cagtatcagc
     2161 attgcagacc cgaacggcgg gaagaatatc agactgaaag gagcattcta tgagcaatct
     2221 tttacagacg ggcgcggagt tcgagaaaaa gctgaaagag agagccgaat ctacagagaa
     2281 aatgctgaac gacgagttca ggaagctcga agaatctgta agcaaggctg tgacatcaaa
     2341 cgagacgaaa atcaaagacg ctatagccct gttcacagct tcgacagagg aatcactgaa
     2401 aaaacaccgg gaaggggtga aagaggcgat gatgcagcac aggaaggacg tgttaaagct
     2461 ggcagggaat acgggcatga tgttgctggg gatggttatt ttcctgttta ccgtgagtgg
     2521 cgggacgctc tggtatcttg gcgggatgat acaggcgaac ctggaagaaa tcaggaagca
     2581 gaacgagagt ctggagaagc tgaacgcgaa gacatggggc gtgcgttatc acgaggggag
     2641 caacggacgt tttctggtgt tgcccgaggg gatgaaagcc gaaacgaact ggacgatgga
     2701 aaacgggaaa cagaatgccg taaggctggt acaggagtaa cagagcatga cggagctgga
     2761 aagacatttg ctgaacgcat tagagcaact gcaacaggac tatatgcagc ggctgaacga
     2821 atgggagagc gccttcgtgg aattgcagaa aatgttttcg cttacgcaac gggacaacgc
     2881 gatgctgaac gagcaggtca tgcagttgag tcagcaggtg cagcacttga gcgagcggac
     2941 agaacgcttg agccagttat acagcgagaa caggagataa gggacgaacg gctgatacag
     3001 gaatgcgaac atgagttatc cctggagcgt gagcgccagc cggaaataca ggaacgcaca
     3061 ctggatggtc cttcactggg atggtaatca gagacaggct aaaatgttgt cagcgcgttt
     3121 ccggtgcatt ttttgggata atggttggtt cgggggggca ccgggaacgc gcttcagtca
     3181 gaccttgctg aaaacacagg aacgcgttaa aacgcatacg ggcgcgattc tggtgtgtct
     3241 tttgttgctg tgttttgcct ctattgccag atcgcgctca ttcccctgaa cttctgtttt
     3301 cccgctcagg tccccgtctt cttcgcttcc gaaagcatga aaaaaatccg tttcagctgt
     3361 ctctggctgg caattcctgc gtgattcaca tggctgcata gctatgcatg tggttaaaat
     3421 ttaccgggtg cgatcgcggc agtttttcgg gtggtttgtt gccattttta cctgtctgct
     3481 gccgtgatcg cgccgaacgc gtttcagcgg tgcgtacaat taagatatta cgttaaattg
     3541 tgagggaatg gtccccatat actgacttta tcatagggat agggttggta gtgggtcgat
     3601 tgggtttcgg cattgtttcc gttaatgcca attgcatttt tgtatttgat gcaacagaag
     3661 gcgtgagatt ctcctgggcc tggaaaggct aagtgtttag aattgatggc aaaatatctt
     3721 ccgtccgatt tttgaagtag ttgttgtttg gctgtctccc aaagggtgct gttacaaact
     3781 tcttgaattt gtagtttttg cagggctctt attactgcgt tgtcatgttc caattcttta
     3841 ggggagtgta ttattctctc ttttaataag ctgtttacca cagggtttag ttgttgtcta
     3901 aagcacgcag ataatgccat tgctacacaa ttttgttccc gaggaagcat gtttggcggg
     3961 gtatgccgtg tttgatgtga tatgtctatt ctcatagaag gtctctggct tatagcatca
     4021 acaaatacgg ctataaaaca aaattttcat agagtgattc aagatcttct tgagatcctt
     4081 ttttgcggcg cgtaatctgc tgcctgcaaa c
//
LOCUS       DAJVUP010000240         4059 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.242, whole genome shotgun sequence.
ACCESSION   DAJVUP010000240 DAJVUP010000000
VERSION     DAJVUP010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4059
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.242"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1046)
                     /locus_tag="OQQ75_004057"
     CDS             complement(<1..1046)
                     /locus_tag="OQQ75_004057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HCS1978192.1"
                     /translation="MREINMLRNISSCLFPHISKITSPNHYLSEWDDWEKQGLPEEQR
                     TEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKEL
                     IARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK
                     KLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQEN
                     IIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQ
                     FRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVS
                     TQWTSFSTEENSRA"
     gene            1537..1647
                     /locus_tag="OQQ75_004058"
     CDS             1537..1647
                     /locus_tag="OQQ75_004058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA invertase"
                     /protein_id="HCS1978193.1"
                     /translation="MLIGYVRVSTNDQNTDLRRNALNCAGYELIVERMGA"
     gene            1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ75_004059"
     CDS             1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ75_004059"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HCS1978194.1"
                     /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS
                     PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYN
                     AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG
                     HLVAQDPAEVTTIEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL
                     DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ
                     PRGFNVDHSGKYLIAAGQKSHLISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH"
     gene            complement(2963..3915)
                     /locus_tag="OQQ75_004060"
                     /pseudo
     CDS             complement(2963..3915)
                     /locus_tag="OQQ75_004060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308823.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
BASE COUNT         1085 a          828 c          952 g         1194 t
ORIGIN      
        1 aatgcccggg aattctcctc ggtggaaaaa gaagtccatt gtgtagaaac ctcccgacga
       61 tctgcttcag gaaaccaggc tgccacagtt tcgggaagag gggggatctg aaagttctgc
      121 cccccttcag tgatgactct gatatggcgc gaatgtaaat tttgcggcaa catctggcgt
      181 aaaaacagtc tgttttggtc tgacagggaa atacgaaact gaggcccgtt aaaatttgga
      241 accgaagttt gctgtattaa gaatagcaga gtttgatctg ataaggggtt atttgcaatc
      301 tcaatagtta tatgaggatc taaacgaaaa agatttgtcg ggattgtagt tatttggttg
      361 ttttcaaaat aaaaaaatct tctcatgata atattttctt ggatgtttgg taagttgctt
      421 aatctattgc tatatgcaaa aagaagttgc agtctcctag gtaaaggggg cagttcagta
      481 agatggttgt gcgcaacctt aagtatctta agattagaag gcagagatgg aagagtttgc
      541 agttcgttgt tcctaacctc aagttttttt aaattcaagg gtaatgaagg cagtgtggat
      601 aacctattat actctgcgct tagtgatttg atggtgtctg gtaataacgg cagattctct
      661 aattgatttt cggacacatc caaagttatt agataatgtg gtaatgcaga tatatgtgtt
      721 aagaaattat ctcttgcaat aagttcttta atattttcag gtaaatcagt aaggatggtt
      781 aatttattac agctcacatc aagcttttta atgcaagcag ggagtacagg taacgaggaa
      841 agcgccaagg ctcgcaggtc cagtttatgc cccttagagg taagacatgc acgaagtctt
      901 cttaccgcct cagtacgctg ttcttccggt aacccctgtt tctcccaatc atcccattcg
      961 gacaaataat ggttggggga tgtaattttg ctgatatgtg gaaataaaca ggatgaaata
     1021 tttctgagca tattaatttc tcgcatatgg atatggaatt agattgtgaa taaattgtat
     1081 ttaatgtatc tctcctaatg aggagggtgt ttcagaatat tcgccataag ggaatgagtg
     1141 ttatatcatg ctttctatcc tggtaagtat gtttgctttt ttcgtatatt tggttcatct
     1201 ttttttgatg ttttacatat tcacaatgca gaggatttat accagaagac attagtcttg
     1261 agtaagatac tacaacatct ccaactattt tagccagcct gactacttga cttggtaata
     1321 tttgttgcta ataatcatgt ataaaataag cttatataca tagtaacttc agcaaaggat
     1381 ttagtaatga tccaaatcat atatcaatgt actgtttttt tctttaaaaa aacagtacat
     1441 tctattttat aatgactgtg tattcccatg gaaggagatc acccaattct cccccccgac
     1501 ttttgacgca gtgtcttgtt aacaggggga tttaccatgc ttattggcta tgtacgcgta
     1561 tcaacaaatg accagaacac cgatctacga cgtaatgcgt tgaactgtgc aggatatgag
     1621 ctgattgttg agcgaatggg agcttgattg gaagttgtta gggtatggtg tttacggtcg
     1681 ttgatatggc gaacaaacgc ggggagcgtc acgctcccta aatggtcgcg aaaatatctg
     1741 tggcattgtc aaatttgtga cggtgactaa tattttaatg atatgccatt cgaaatggtg
     1801 tgctaacgta ttgatttaat tgtgacgcga tgttgtattt tatcgcgttt tgttgtctgt
     1861 ttttcattcg cttgatgttg ctatttacat gaaaaataaa gaatttattg tttttgaggt
     1921 gtgtttatga agcaaacagt ttatatcgcc agccctgaga gccagcaaat tcacgtctgg
     1981 aacctgaatc atgaaggcgc actgacgctg acacaggttg tcgatgtgcc ggggcaggtg
     2041 cagccgatgg tggtcagccc ggacaaacgt tatctctatg ttggtgttcg ccctgagttt
     2101 cgcgtcctgg cgtatcgtat tgccccggac gatggcgcac tgacctttgc cgcagagtct
     2161 gcgctgccgg gtagtccgac gcatatttcc accgatcacc aggggcagtt tgtctttgta
     2221 ggttcttaca atgcgggtaa cgtgagcgta acgcgtctgg aagatggcct gccagtgggc
     2281 gtcgtcgatg tggtcgaggg gctggacggt tgccattccg ccaatatctc accggacaac
     2341 cgtacgctgt gggttccggc attaaagcag gatcgcattt gcctgtttac ggtcagcgat
     2401 gatggtcatc tggtggcgca ggaccctgcg gaagtgacta ccattgaagg ggccggcccg
     2461 cgtcatatgg tattccatcc aaacgaacaa tatgcgtatt gcgtcaatga gttaaacagc
     2521 tcagtggatg tctgggaact gaaagatccg cacggtaata tcgaatgtgt ccagacgctg
     2581 gatatgatgc cggaaaactt ctccgacacc cgttgggcgg ctgatattca tatcaccccg
     2641 gatggtcgcc atttatacgc ctgcgaccgt accgccagcc tgattaccgt tttcagcgtt
     2701 tcggaagatg gcagtgtgtt gagtaaagaa ggcttccagc caacggaaac ccagccgcgc
     2761 ggcttcaatg ttgatcacag cggcaagtat ctgattgccg ccgggcaaaa atctcacctc
     2821 atctcggtat acgaaattgt tggcgagcag ggactactgc atgaaaaagg ccgttatgcg
     2881 gtcgggcagg gaccaatgtg ggtggtggtt aacgcacact aaccgctgat ttaaccggcg
     2941 cagtctctcc tgcgccggtg tattaaccta tctcctgtaa cgcatgtctc tggcgttcga
     3001 cgatattggt ccacaaattg tctttatcgt cagtccacaa attaatcagc aaggcaaaaa
     3061 agcgttcagc tgccggagaa agcacggcat ctttgcggcg aataatcccc aatgtccgac
     3121 gtataacggg ttccaccagt gggataccaa taatcgaaga atagggcgca tggggcattg
     3181 ccagaccagg aagcgccgaa atccccagtc ctgcctccac tagtcctaat gacgtcgaaa
     3241 gatgacgcac ttcgtaaaac cagtccagct tccagggctt gtcggccagc tgttgttcta
     3301 tcaacagtcg gttgccgctg gaggagcgta cgccaatcat tttgtaaccc actaactcct
     3361 gccattctac aagctgcttt ttggccaatg gatggtcacg ccgacaggca gcacgaacgg
     3421 ctcgttgacc agtggggtaa aatcaatgga tgaatttgtg acgttgttca tgtttatgcc
     3481 aaagtctgat tcgttacaca gcaccgattc catgcaatta ttcgtgcctt gttccagaat
     3541 ccgcacttta atattgggat acagctcatt aaatttaccg attgccagcg gtaaaaaata
     3601 aaatactgcg gtcggaatac acgctaacgt caccatacca cgatgataag cattcatatc
     3661 acgaatatta aaaagcgttt catcgaattt ctttattaat tcccgcgcct ccgggagcaa
     3721 cctttttcct gcttttgtta acgtaacctt gcgagttgta cgctcaaata gttgaatatg
     3781 taaatcttcc tccatctttt ttattcttcg cgttaatgca ggttgcgtaa tattgagtaa
     3841 tttagcggca ttgttaaacg aactggactc tgccagtatg acaaatgcct tcatacttga
     3901 taattcatgc ttcattatta ctccggaaaa tggaagcgac gattttgggt ggctggccgt
     3961 taaaaatttt aactgcattt agccaactta aattaatgaa aaaatgttat taatcgttga
     4021 gctaaagtca ttagagatgc tttgccctta atgtaacca
//
LOCUS       DAJVUP010000241         3940 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.244, whole genome shotgun sequence.
ACCESSION   DAJVUP010000241 DAJVUP010000000
VERSION     DAJVUP010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.244"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(626..1573)
                     /gene="icsP"
                     /locus_tag="OQQ75_004061"
     CDS             complement(626..1573)
                     /gene="icsP"
                     /locus_tag="OQQ75_004061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease IcsP"
                     /protein_id="HCS1978195.1"
                     /translation="MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
                     TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
                     DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
                     FNAMGGSYIYSENGGNRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
                     KYSGWVRSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
                     KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
     gene            complement(2954..3106)
                     /locus_tag="OQQ75_004062"
                     /pseudo
     CDS             complement(2954..3106)
                     /locus_tag="OQQ75_004062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            3162..3854
                     /gene="ospZ"
                     /locus_tag="OQQ75_004063"
     CDS             3162..3854
                     /gene="ospZ"
                     /locus_tag="OQQ75_004063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     methyltransferase OspZ"
                     /protein_id="HCS1978196.1"
                     /translation="MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDK
                     KYISGITRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASIPEGSWLTV
                     ISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVFRNDSPQGELR
                     ANRFIELYDIKREIMQVLRDESPELKSIKSEIIIAREMGELFSYASEEIDSYIKQMND
                     RFSQIKARMSVT"
BASE COUNT         1217 a          747 c          731 g         1245 t
ORIGIN      
        1 ttatcgctcg ccacgggaat atctgcggca gcgggccaat gataacaggt gtctggaaat
       61 ataggggcaa agccacccac gaacgatcca gcatataatc aagaaattag atttcattta
      121 acataagata gattatgtgc accaagaggc atttccttaa tttctgaatt tacaggctct
      181 tttgctctct ttgctatgct gtggatttgg aaagatagag tgctggctga ttatttaggt
      241 attttcatca gcatgtccct gatagcactg ttccatcagc gctttcaggc gataatagta
      301 gaccttggat agcctctgct catgtgtaac ttgatacccc gagaacagcc acgatgctct
      361 aagcggttct tatttctccg gtctcagggt cggtaatgcc aacagtaagt ccacagtaat
      421 caacgaagag ttttttgaac cgccccggaa atcctggaga ctaaacgccc tgagaaagag
      481 gtaaacagaa tgactaaaaa tacacgtttt tcccccgaag tccgtcaacg ggcagttcgt
      541 atggttctgg aaagtcaggg cgaatatgac tcacaatggg cggcaatttt tagccatgaa
      601 aacgtaatca actcggtgaa ccaattcaaa aaatatactt tatacctgcg gaagtgagaa
      661 aaccaatata ttcaatactt gcactatttt taatggtgcc agatatattg gtactttgct
      721 cataaagaga tgtatcacct tttttattag aaatgtaatt tctggagcct tctatataaa
      781 attttgcact gggggtgaca tagtatccaa tattcgcagc aacagagcag taattttggt
      841 tttttatttc atctttaaaa attgtctcag tctgatagtg tttatctgta tcagatgaac
      901 gaacccaacc actatatttc agttctgctc caaactcaaa attctcatgg cggtaattag
      961 cagttaatcc aatataaggt attttgaaga gctgtttgta acctattgtt ctttcaccac
     1021 taggatgtgc ccctttttta ttcctgttcc ccccgttttc actataaata taactccctc
     1081 ccattgcatt aaaactgtaa cgactctctt ggtaacctgc tattagtcca agtcgataat
     1141 ccaaattatt taataaccaa cctttaagat tcagctcgaa ttcgttagca tcacggagat
     1201 gcgtattggg atgccagctc tggtcggtcc atacctgagg ggtattggaa ttgttccagt
     1261 ctttatcaac catgcttgct ttctggttac ctaaagtagt ccaaccggaa actccgaaag
     1321 acacttttgg aattagcttc caatcgatgc cacctctaac aatagtcgca ttactgtatt
     1381 tccagtccag ttgactaatt tttctccccc cttccttggg atgataaacg cgttcttttg
     1441 ttttgccact cagagatcct agactaatat ccgtactgat gttatccggt atgaaaagtg
     1501 gatagttagt ggtagcatgt gtagtaaaga tcgcaggtac acaaagtgca agtacaagga
     1561 attttaattt catcgagaac tctacttttt tggttgaaat gtccatgatc ttcttacttt
     1621 ataagataaa cgtcaatgcc aagcattatt ttaattaaat atttgtttat gttaccaaga
     1681 acatatcttt tattataata tttattgaac ttttgtaaaa ataaaaaaat acctcattgt
     1741 gcgaataaag taacgggggc catagatttc tctacctacc ttttggtgtt catacctgag
     1801 gctgatagtt tcaggattcc gcgacaattc tactcacctt cttgttctct cgccaatatg
     1861 aaatcaatca gaaaagcgtt ccataagaac aacgataaga caataaattg tcatcacggc
     1921 tgcaatagcc aacgtgcctt tcagtaccaa catgacaacc tcctgtattt gacgtaacgt
     1981 gtgctgataa atatgtattt gtatctcaac tgactcaata caacacttaa gtatagtttt
     2041 tcagattttg tttttcccgt gaaatattat ggaaatggca gaagcaatac attgaattcc
     2101 gattcgagtg aatacggcta gcgggcacct cactttagca ctgaagccat caacttttat
     2161 ttgacttatt tcaatggaaa gctttctcac tatcagtaca ggtaattccc atccttttaa
     2221 agtcgagagt cagactgcga ctaatacagt taaagtgacc aaactcagtt atcctctaca
     2281 cattttacct catgtttact tggacaattc attggtgctt ttataaaaga ataaatattc
     2341 tactaattta atgcatcacc taaaatagta ttttttataa tagaactgta tctatagtat
     2401 attattaaag cttaattatt tattatgctt taatgtggtt gtccgattaa ggactaatcc
     2461 ttgaaaacgc cgtatagggc gggagttcac tctattgcga taacgtaacc gtacaatatt
     2521 gtgcgtttcc caaattgacc actactgaac tattctggga tttaaatgca ataaaatggt
     2581 tggttgaagg tcgtggtgat gatgttagtc cttttgagaa tattccagtg ccagatctta
     2641 cttataataa agaggcttgg cagtttggat aagctattgt ccttattcca ctaatacaaa
     2701 ctttttgtaa agtatattaa atatacttca tttcatactg aaatccccgg aagtattcaa
     2761 tcaaacaatt acaccataaa aggaagaggg agccccaatt aagttatcaa gcatgtttat
     2821 gatacctgca gggtataaat tttctggctg caagcagaca catataaaac gtctttattg
     2881 atcctaccca cataatatgg acgcagtcgt aagtgaggct ctgtgagcct acccacgtaa
     2941 tatggacaca ggcctaagcg aggttctggt tttcaaattg ttccggactg aggccgccac
     3001 accaacggtg ccgtcgccag cgattgtaat cgcactcgat ataattaaac actgttgccc
     3061 gcactatttc ccgatagata aagtgttctc cgtggagaca ttccacttag gaacaattat
     3121 attgttcatg gtaatgttta tatttgagta tagagattaa aatgattagt cccatcaaga
     3181 atattaagaa cgtatttcca ataaatactg caaatactga atatatagtg agaaatattt
     3241 atcctagagt tgaacatggt tactttaatg aatcaccaaa catatatgac aagaagtata
     3301 tctctggtat aaccagaagt atggcacaat taaaaataga ggagtttatt aatgagaaat
     3361 ccagacgact taattatatg aagacaatgt attctccatg tccggaagat tttcagccta
     3421 tttccagaga cgaagccagt ataccggaag gaagctggtt gacagttata tctggaaaac
     3481 gtcctatggg gcaattttct gtggatagtt tgtaccatcc tgacttacat gcattatgtg
     3541 agctcccaga gattagttgt aagatcttcc ctaaagaaaa tagtgatttt ttgtatataa
     3601 ttgttgtatt cagaaatgat tctccccaag gagaactacg ggcaaatcgg tttatagaac
     3661 tatatgatat aaaaagagag attatgcaag tgttaagaga tgagtcgcca gagttaaagt
     3721 ctattaaatc tgagattatt attgctcgtg aaatgggaga actttttagt tatgcatcag
     3781 aggaaataga tagctacata aaacaaatga atgacaggtt ttctcaaatc aaggctcgaa
     3841 tgtctgttac ttaatgtata ttaattgtat gaagtggtca acaaaaactg gccaccgagt
     3901 tagagttttt ccagtatcga ttttccgatt cgtttggggg
//
LOCUS       DAJVUP010000242         3927 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.245, whole genome shotgun sequence.
ACCESSION   DAJVUP010000242 DAJVUP010000000
VERSION     DAJVUP010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3927
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.245"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            114..617
                     /gene="yeaK"
                     /locus_tag="OQQ75_004064"
     CDS             114..617
                     /gene="yeaK"
                     /locus_tag="OQQ75_004064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mischarged aminoacyl-tRNA deacylase"
                     /protein_id="HCS1978197.1"
                     /translation="MTEMAKGSVTHQRLIALLSQEGANFRVVTHEAVGKCEAVSEIRG
                     TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL
                     TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTTDYLRIAQPEL
                     VNFRRTA"
     gene            complement(618..722)
                     /locus_tag="OQQ75_004065"
     CDS             complement(618..722)
                     /locus_tag="OQQ75_004065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416302.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978198.1"
                     /translation="MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG"
     gene            891..1337
                     /locus_tag="OQQ75_004066"
     CDS             891..1337
                     /locus_tag="OQQ75_004066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HCS1978199.1"
                     /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFP
                     WIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG
                     VTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ"
     gene            complement(1294..2115)
                     /gene="nimR"
                     /locus_tag="OQQ75_004067"
     CDS             complement(1294..2115)
                     /gene="nimR"
                     /locus_tag="OQQ75_004067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NimR"
                     /protein_id="HCS1978200.1"
                     /translation="MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLI
                     LALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTC
                     CTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI
                     RTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQG
                     LVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ"
     gene            2212..3408
                     /gene="nimT"
                     /locus_tag="OQQ75_004068"
     CDS             2212..3408
                     /gene="nimT"
                     /locus_tag="OQQ75_004068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005117270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-nitroimidazole transporter"
                     /protein_id="HCS1978201.1"
                     /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY
                     SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY
                     LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLA
                     LNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL
                     FLGSNSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQ
                     RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAA
                     ALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEI
                     RSYPVL"
     gene            3448..3795
                     /locus_tag="OQQ75_004069"
     CDS             3448..3795
                     /locus_tag="OQQ75_004069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HCS1978202.1"
                     /translation="MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEI
                     TPSTELRKAFHGEVVDFTTFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQ
                     NHALVLADWLRSL"
     gene            complement(3817..>3927)
                     /gene="yoaF"
                     /locus_tag="OQQ75_004070"
     CDS             complement(3817..>3927)
                     /gene="yoaF"
                     /locus_tag="OQQ75_004070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing lipoprotein YoaF"
                     /protein_id="HCS1978203.1"
                     /translation="IPVSTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK"
BASE COUNT          899 a         1003 c          985 g         1040 t
ORIGIN      
        1 tacatgatgc gtataaagct tccgatgagc gtttatatgt caataagcag aacaaaaaca
       61 gccgttcatg ataaccttct gtggttgttt gcttgtaatc tcaggagcgt gaaatgactg
      121 aaatggctaa aggaagcgtg acgcatcagc ggttaatcgc tttattatca caagaaggtg
      181 ctaacttccg cgtcgttacc catgaagcgg taggtaaatg tgaagcggtg tcagaaattc
      241 gtggcaccgc tttaggccag ggagctaagg cactggtatg taaagtcaaa ggcaatggcg
      301 taaatcaaca tgttctggcg atcctcgctg ccgatcaaca ggccgatctg agccaacttg
      361 ccagccatat aggcggatta cgcgcttcgt tagccagccc tgctgaagtc gatgaactca
      421 caggctgtgt cttcggcgcg atcccccctt tcagcttcca tccaaaactc aaactggttg
      481 ccgaccctct actcttcgaa cgatttgatg aaatcgcctt caatgcaggg atgctggata
      541 aatccgttat tttgaaaacc acggattatt tgcgcattgc gcaaccagaa ctggtcaatt
      601 tccgccgcac tgcgtaacta gcctgtccgt tcaataagca gaacggacaa aaccagcaca
      661 acagcaatgg caaaaaacga tgacgtgata atcagtgtct cgacgaacat ttgatcgttc
      721 atagcatgcc cccgggagat agctgttttc acgttattgt tagcgtgcac aaatggcagt
      781 ttgatgacag ttcgcctgat ttttatgcaa aaaacgtaaa gattttctac ttccttcctg
      841 cagcaagcgt aaagtaagca ggcttattat tttttggcaa ggaaaccacg atgtttgatg
      901 tcactttgct gatcctgctc gggttagctg cgctgggctt tatcagtcat aacaccactg
      961 tcgccgtttc aattctggtg ttgatcattg tccgcgtcac accgttaagc acctttttcc
     1021 cgtggattga aaaacagggg ctaagtatcg ggataatcat tctgacgatt ggcgttatgg
     1081 cccccatcgc cagcgggacg ctaccgccct caaccttgat tcactcgttt ctgaactgga
     1141 aatcgctggt ggcaattgca gtaggcgtga ttgtctcctg gctgggtggg cgcggcgtga
     1201 ccttaatggg cagccagccg caactggtcg ccgggctgct ggtaggcact gttttaggcg
     1261 tggcgctgtt tcgcggcgta ccggtcggcc cgcttattgc cgcgggtctg gtttcgctga
     1321 ttgtggggaa acagtagtta atcccgcaat atatcggcct ggcgtttgcc ccaggccttt
     1381 cttaaacata gtaataaagg ccgttgttga atcatacccc agcgtatgag caactttctg
     1441 tacagtatcg cctttcacta atccctgaag tgccataatc agctgtaact gctgacgcca
     1501 ctggcgaaaa ctcaaccccg tctcttttac gatcagtcgc gcaagattgc gttcactcat
     1561 cgcaaaaaag ccagcccatt gccctaatga cccccactcg acgggccctt tcgccatcat
     1621 ctccaccatc gtgcggattt taggatgaga agaaacgggc aggtgcagct gttgttgtgg
     1681 ctgctgaggg agttcatcaa acaggacctg tattaatctg cgggtcatcg gctcagcacg
     1741 ctgagtcgtc gtcctgtttg ccagggttaa aatcaattcc cggcataagg gcgatatttt
     1801 caatgtgcaa catgttgtcg gcattgtcac tgcgctgggt tcgataaaca gaaaacagag
     1861 ttcagcgtta gctgtcactt gattgctatg ttccaccccg cccggtatcc aaaccgcata
     1921 ttgcggcggc accatccaca aagcattttc caccgtacag gtaattgcac catgtaatgc
     1981 tagtatcagc tgtcctttgc ggtgctgatg tacaggactg gttaactcat ccgttccggc
     2041 gtgaatacaa aatgcgaccg cggcttcatg gtgtcggtcg ggttcatagc cattgagatt
     2101 caacctgtgc atcattttgt ccgaatttag cgataatttg tcattttagc ttgattcaac
     2161 ataacaataa aaacggtaag gtacagcctc gtttgtaaca atgagaagca tatgacctgt
     2221 tcaacttcat taagcggcaa aaacaggatt gtccttatcg ctggcattct gatgattgcc
     2281 acaacattac gcgtcacctt taccggcgca gcaccgttac tggatacgat tcgttccgct
     2341 tactcgctga cgacagcgca aaccggctta ttgaccaccc tgccattatt ggcctttgcg
     2401 ctaatctcac ctttggccgc cccggtagcg cgacgttttg gtatggaacg tagcctgttt
     2461 gccgcgttac ttttgatctg tgctggtatc gcaattcgct ctctcccttc gccttactta
     2521 ttatttggcg gtacagcggt cattggcggt gggattgcat taggcaatgt cttactgcca
     2581 ggattaatta aacgcgattt ccctcattcc gtcgccagac ttaccggcgc atattccctg
     2641 acaatgggag ctgcggcggc acttggatcg gctatggtag tgccgctggc tttgaacggt
     2701 tttggctggc aaggcgcgtt gctcatgctg atgtgttttc ctctgctggc tcttttttta
     2761 tggctgccac agtggcgaag ccaacaacat gcaaatttga gtacctcgcg cgccttacat
     2821 actcggggta tctggcgttc gccgcttgcc tggcaggtca cattgtttct tgggagcaac
     2881 tcactggtct attacgtgat tattggctgg cttccggcga tcctcatcag tcacggctat
     2941 agcgaagcac aggcgggttc actgcatggt ttgctgcaac tagccacagc agctcccggt
     3001 ttgctgatcc ctcttttctt acatcatgtg aaagaccagc gtggtattgc agcgttcgtt
     3061 gccttgatgt gcgcagtggg cgctgttggg ctctgcttta tgccagcgca cgcgatcacc
     3121 tggactctgc ttttcggttt tggttccggc gcaacaatga tactggggtt gacgttcatt
     3181 ggtcttcggg caagttctgc gcatcaggcg gcggcactct cggggatggc acaatccgtc
     3241 gggtatttgc tggcagcctg tgggccgccg ctaatgggta aaatacacga tgctaacggt
     3301 aactggtccg taccactgat gggtgttgca atactttcac tactgatggc gattttcgga
     3361 ctttgcgccg ggagagacaa agaaattcgc tcatatccgg tgctatagtg acgtgacaaa
     3421 tcatgcgtga aagggagaac aaacacgatg aatattcagt gcaaacgcgt ttatgatccg
     3481 gctgaacaga gcgatggtta tcgcgtactg gtcgaccgcc tctggccgcg cggtatcaaa
     3541 aaaaccgatt tagcccttga tgagtgggat aaagaaatca cgccgtcaac ggaactgcgc
     3601 aaagcctttc acggcgaagt cgtcgatttt acaacctttc gcgagcaata tcttgcagaa
     3661 ctggcgcaac acgagcaaga aggaaagcgg ctggcggaca tcgccaaaaa acagccgctg
     3721 accctgctct acgcagcaaa aaacaccacg cagaaccatg cgctggtgct ggccgactgg
     3781 ctacgtagct tgtgatttta gtacagcatc cggcggttat ttttcaccag ccggatggtc
     3841 ccgtcgccac aatgcccatt catcaatcgt ttcaccgccc ggtaatttgc aattgttgct
     3901 gaccccttgc gctgtcgaca ctggaat
//
LOCUS       DAJVUP010000243         3874 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.246, whole genome shotgun sequence.
ACCESSION   DAJVUP010000243 DAJVUP010000000
VERSION     DAJVUP010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3874
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.246"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..102)
                     /locus_tag="OQQ75_004071"
     CDS             complement(<1..102)
                     /locus_tag="OQQ75_004071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HCS1978204.1"
                     /translation="MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVEF"
     gene            complement(115..1896)
                     /gene="gcl"
                     /locus_tag="OQQ75_004072"
     CDS             complement(115..1896)
                     /gene="gcl"
                     /locus_tag="OQQ75_004072"
                     /EC_number="4.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate carboligase"
                     /protein_id="HCS1978205.1"
                     /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR
                     HILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG
                     QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV
                     DLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINAD
                     AAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFG
                     IGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ
                     EMQKAGRLPCRKEWVADCQQRKRTLLRKTYFDNVPVKPQRVYEEMNKAFGRDVCYVTT
                     IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ
                     FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG
                     VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE
                     LDNVMEFEDIADNAVDAPTETCFMHYE"
     gene            complement(1986..2801)
                     /gene="allR"
                     /locus_tag="OQQ75_004073"
     CDS             complement(1986..2801)
                     /gene="allR"
                     /locus_tag="OQQ75_004073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor AllR"
                     /protein_id="HCS1978206.1"
                     /translation="MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVS
                     DISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVA
                     GPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKAL
                     LYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCI
                     ASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP"
     gene            complement(2879..3361)
                     /gene="allA"
                     /locus_tag="OQQ75_004074"
     CDS             complement(2879..3361)
                     /gene="allA"
                     /locus_tag="OQQ75_004074"
                     /EC_number="4.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HCS1978207.1"
                     /translation="MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALV
                     EILEQDRTLISINRAQPANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDL
                     STLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA
                     "
     gene            3591..>3874
                     /locus_tag="OQQ75_004075"
     CDS             3591..>3874
                     /locus_tag="OQQ75_004075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1978208.1"
                     /translation="MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENT
                     GVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPSKLQQVNDGVERQV"
BASE COUNT         1004 a         1050 c          916 g          904 t
ORIGIN      
        1 aaattcaacg ccgcgaaaac cacactgcgc agctttctca aaacgggcga gaaaatcata
       61 ttcaccaaat aacatcgata aattagcaga gaaacgtaac attatttatc tcccttattc
      121 atagtgcatg aagcaggttt cagtcggtgc gtccactgcg ttatcggcga tatcttcaaa
      181 ttccatgacg ttatccagtt cgctgcccat cgaaatattg gtcacacgct cgagaataac
      241 ttccacgact accggtaccc gatattgcgc cattaaggct ttcgcctgtt caaaggctgg
      301 cgcaatatct tccggtttga agacgcgaat cgctttacaa cctaaacctt ccgctacttt
      361 tacgtggtcg acgccgtaac cgttcacttc gctggagttg atattctcga aagcgagttg
      421 cacgcagtag tccatgtcaa aggcgcgttg tgactgacga atcaggccga gataggcgtt
      481 attcaccagc acatggatgt acggaatgtt gaactgcgcg ccaacggcta actcttcaat
      541 caggaactgg aagtcaaagt cgccagaaat cgccaccaca ttgcgtttcg gatcagcggc
      601 acaaacccct agcgcagccg gaatcgtcca gcctaacgga ccagcctgac cacagttgat
      661 ccagtggcgg tctttaaaga catgcagcat ttgtgccgca gcgatttgtg acagaccgat
      721 ggtggtgaca taacaaacat cgcgaccaaa ggctttgttc atctcttcat acacgcgctg
      781 cggtttcacc ggcacgttgt cgaagtaggt tttgcgcagc aaagtgcgtt tgcgctgctg
      841 gcagtcggcg acccattctt tacgacacgg cagacgaccc gctttttgca tctcctgcgc
      901 cacttcaacc agcagtgtca gcgccgcttt agcatcagag acaatgccga gatccggaca
      961 cagcacgcga ccaatttgcg tcggctcaat atcgatatga acgattttgc gcccttcggt
     1021 gtatttctct accgaaccgg tatgacggtt agcaaaacgg ttaccgatac caaacaccat
     1081 gtcggacgcc agcaacgttg cgttaccgta acgatgcgcg gtttgcagac cgaccatccc
     1141 ggccatcagt tcatgatcgt ccgggataca gccccagccc atcagcgttg ggatcaccgg
     1201 aacgctggtc agttcagcaa actgttgtaa cagtgcagct gcgtcagcat tgattacccc
     1261 gcccccggca acaatcaccg gacgttcggc ctggattaac atttctacag ctttttcgat
     1321 ctgcatacgg ctggcagcag gtttgtagac cggcagcggt tcgtacatgt caggatcaaa
     1381 ctcgatttcc gcaacctgaa cgtcgaacgg taaatccacc agtaccggac ccggacgacc
     1441 agaacgcatc aggtgaaatg cctgttgcag cacgcgaggc accagcgccg cttcacgaac
     1501 tgtaaccgcc attttgctga ccggtttagc aattgcttca atatctacgg cctgaaaatc
     1561 ttctttatgc agacgggcgc gcggtgcctg gccggtaatg cacagaatag gaatggaatc
     1621 agcagaagcg gaatagagcg cggtgatcat gtccgtgccc gcaggaccgg aagtccccag
     1681 acatacgccg atattccctg ccgttgcgcg ggtataacct tccgccatgt gcgaagcacc
     1741 ttccacatga cgcgccagaa tgtgacgaat accgccgtgc ttacgcatcg ctgagtagaa
     1801 cggattgatt gcagctcccg gaacaccgaa ggcggtggtg ataccttctt tctccagcac
     1861 atacattgcc gcgtcaacgg ctctcatttt tgccatttta ttcctatctc tatttattgg
     1921 aaaatttttc caactttcaa attttgtcaa aaaaacccgc tccgcagagc gggatgcgac
     1981 agacattatg gatgtgcttt cagtcccaac gccgtgctga tatcgcgggc ggtgtctctg
     2041 accagctcac cctgactgac aaaacgatct tctgtcagtc ttgatgaagg cccggagatg
     2101 gagatagcgg caacaacgct accgacatca tcgtaaattg ctgaagctat gcaattcaga
     2161 cctacaacat gctcttcttt atctacggta tagcccagtt cacgcgcttg ttccaggtcc
     2221 ttcagcaagg tgggcatatc cacaagcgta gttggcgtaa actgctgcaa accggtttgc
     2281 agaatgatgc tcatcaactc ctcttccgcc agcggataaa gcagcgcttt gcccgcaccg
     2341 gaagcatgca gcggcagacg actgcccagt ggcgcacaca tcctgaccat tgatttacac
     2401 tctaactgac caattaatac tgcttcattg ccgttacgga tcgcgacatt gaccgtttcg
     2461 ccggaaagta acatcaggcg gcgcataaac ggcccggcga cggagaggac atcgcggtta
     2521 tggatgtacg ccgcaccgac gttaaagaca cctaatccta tatgccacca gcctaattga
     2581 ctgtcctgat agacaaaatc cgctgcttgt aaaaccttca gcaagcgaaa ggtcgtggag
     2641 agcggcaaat ccagattgag agaaatatcg ctaaccgacg aacttccccc acttttttcc
     2701 agatattgca gaatcgcaat tccccgctct aacgcctgtg cgcccttctg tgccacaggc
     2761 tccgcctgtc ctggcctgcc gcgccgtcta acttccgtca tacctacgtt aactccgacc
     2821 tacaagtgag cataaacaat gaacaattag tttatcttat gcaagtcggt tgcaggcgtc
     2881 acgcaaaaca gagttcctgt tcaggaatac tttcaacatc acagttgtca ctgccgccgc
     2941 gatcgatggt cagaaaatcg gtgacgcgct gccaggcgaa aagtgggtga tgccagacgt
     3001 tacgatggta attcactccc tgttcgccgt tggtgataaa cgcccgcagc gttgacaggt
     3061 ctggtttgtc gtcgcctaac gccacgacca ccacaaacac ttcacctttc atcgggataa
     3121 aggcctgagt gcccagcgga tgacgttcga gttcgtgaat ggtcagcggc agattcgccg
     3181 gttgcgcgcg gttaatgcta ataagcgtac ggtcttgctc aagaatctca accagcgcca
     3241 aatcgtggta acgctccacc aggccattgt taatatggaa aaaatcccgt tgctgagttt
     3301 cgattacgtc gccataagca ctaaaggctt cctgacttaa cggtaatacc tgaagtttca
     3361 tctttttgtc cttgtaacat aattccgttc aaccaccgcc gaccggtcag cttgggttca
     3421 ataacaggca atctaaaacc ttaagagaac aacatcaata caaaagttgg aatatttttc
     3481 caaaactaga tttagtccac aaattgaaca gggttatcat gtaaaaatac tgataaatca
     3541 gaggataaga aaatcacgca acttgcggat ttaaaagggg atacctgaag atgttcgatc
     3601 cagaaacctt gcggactttc attgcggttg ctgaaacagg aagtttttca aaagcggcag
     3661 aacgattatg taaaaccacg gcgacgatca gttatcgcat taaacttctg gaagagaata
     3721 ccggagtagc gctgtttttc cgtacgactc gtagcgtaac gttgacagcg gctggcgagc
     3781 atctactttc ccaggccaga gactggctga gctggctgga aagtatgccc agcaagctgc
     3841 aacaggtgaa tgatggcgtg gaacgccagg tgaa
//
LOCUS       DAJVUP010000244         3851 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.247, whole genome shotgun sequence.
ACCESSION   DAJVUP010000244 DAJVUP010000000
VERSION     DAJVUP010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.247"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..439
                     /locus_tag="OQQ75_004076"
     CDS             <1..439
                     /locus_tag="OQQ75_004076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1978209.1"
                     /translation="FTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVR
                     ISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIA
                     EGVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE"
     gene            447..1775
                     /locus_tag="OQQ75_004077"
     CDS             447..1775
                     /locus_tag="OQQ75_004077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1978210.1"
                     /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID
                     TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD
                     ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLE
                     RFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF
                     AYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDG
                     GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGSYLCLFDVDKFKNI
                     NDTFGHLLGDEVLMKVVKILKSQIPVDKGKIYRFGGDEFAVIYTGGTLEELLSILKEI
                     VHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ"
     gene            complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="OQQ75_004078"
     CDS             complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="OQQ75_004078"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HCS1978211.1"
                     /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD
                     ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG
                     PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP
                     SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS
                     MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK
                     RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF
                     KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE
                     EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV"
     gene            3360..3743
                     /gene="bssR"
                     /locus_tag="OQQ75_004079"
     CDS             3360..3743
                     /gene="bssR"
                     /locus_tag="OQQ75_004079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssR"
                     /protein_id="HCS1978212.1"
                     /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD
                     NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD
                     KLENCLMSLTLSIQSLQKHAMLEKA"
BASE COUNT         1006 a          857 c          950 g         1038 t
ORIGIN      
        1 ttttaccacc atcatgaaag aaaatggcct gaaggcgaac agcctctgtg ttgagatcac
       61 tgaaaccgtg atcgagcgaa ttaatgaaca tttttatctc aatattgaac aactgcgtaa
      121 acaaggggta cggatatcga ttgatgactt tggcaccggt ttgtcaaacc tgaaacgttt
      181 ttatgaaatt aatccagaca gcataaaggt ggactcgcaa tttaccggcg atattttcgg
      241 tactgcggga aaaattgtgc gcattatttt cgatctggca cgctataacc ggatcccggt
      301 gattgcggaa ggcgtagaga gcgaagacgt tgcacgcgaa ttaattaaat taggatgtgt
      361 tcaggctcag gggtatctgt accagaaacc tatgccattc tccgcctggg ataaaagtgg
      421 aaaattagta aaagagtagt ttacgtatgt ccagaatcaa taagttcgta cttacagtca
      481 gtctgctgat ttttatcatg atttcagcag ttgcctgcgg gatctacact caaatggtaa
      541 aggaacgggt gtatagcctg aaacagtccg ttattgatac tgcttttgcg gtggcaaata
      601 ttgctgaata tcggcgtagc gtggcaattg atcttatcaa cacgctaaat cccactgagg
      661 aacagctgtt ggttggtttg cgcacagctt acgccgactc ggtttccccc tcttatttgt
      721 acgatgtcgg tccttatctg atttccagtg acgaatgtat tcaggtaaag gagttcgaga
      781 aaaattattg tgcagatatt atgcaggttg tgaagtatcg acatgtcaaa aatacagggt
      841 ttatctcttt tgacggtaaa accttcgtct attacctcta tccggtaact cacaatcgta
      901 gtctgatatt tttgcttggt ctggagcgtt tttctttact gtcaaaatcg ctggcgatgg
      961 acagcgagaa cctgatgttc tctctattta agaacggtaa accggtgacc ggtgatgaat
     1021 ataatgctaa aaacgccatc ttcaccgttt cggaagcgat ggagcacttc gcctatttgc
     1081 cgaccggatt gtacgtattt gcgtataaaa aagatgttta tttgcgggtc tgtacattga
     1141 ttattttctt tgccgcattg gtggctgtga tatcgggtgc cagttgcctc tatctggtac
     1201 gcagagtgat taatcgtggt attgtggaga aagaagccat cattaataac cattttgaac
     1261 gcgtactgga tggcgggctt ttcttttcgg ctgccgatgt caaaaaactc tacagtatgt
     1321 ataactcggc gttcctggac gacctgacca aagcaatggg cagaaaatcc tttgacgaag
     1381 atttaaaagc gctgccggaa aaaggcagtt atttgtgcct gtttgacgtc gataaattca
     1441 aaaacattaa cgacaccttc ggtcatttgc tgggcgatga agtgttgatg aaagtggtga
     1501 aaatccttaa atcacagatc ccggtagata aaggtaaaat ctaccgcttc ggcggtgacg
     1561 aatttgcggt gatttatacg ggtggaacgc tggaagagtt gctatcgatt ctaaaagaaa
     1621 tcgttcattt ccaggtggga agcattaatt taagtaccag tatcggtgta gcgcattcaa
     1681 atgaatgtac caccgtcgaa cgcttgaaaa tgctggcgga tgagcggctg tataagagta
     1741 agaaaaacgg cagggctcag attagctggc agtaatcatt attcgcaggc cggacaaatg
     1801 attttgcccg gcctgaatta attaaacccg gctaccccac aaatcgtact catcggcgtg
     1861 ctcgactttc acacgcagga tatcacccgg cttaacgttg gtttcaccat tgagataaac
     1921 cgcgccgtcg atttccggtg catctgccat gctgcgacca atcgcgcctt cttcgtccac
     1981 ttcgtcgata atcaccagaa tttcacggcc cactttctct tgcaggcgct cggcggaaat
     2041 ctgctgctgc agctgcatga aacggttcca gcgttcttct ttaacttctt ccggaacctg
     2101 gtcaggcagg gcattggcgt ctgcaccttc aaccgggctg tatttaaagc agccaacgcg
     2161 atccagacgc gcttctttca ggaagtcgag tagcatctgg aaatcttctt ctgtctcgcc
     2221 agggaagccg acaataaagg ttgagcgtag ggtcagttcc gggcagattt cgcgccactg
     2281 tttgatgcgc gccagttggc gatctacaga acccggacgc ttcatcagtt tgagaatgcg
     2341 cgggctggcg tgctgcaacg gaatgtccag atacggcagg attttgcctt ctgccatcag
     2401 tgggatgacg tcgtccacat gcggataagg gtaaacgtag tgcagacgtg tccagatccc
     2461 cagtttcgat aactgttcgc acaggctgac catgctggtt tttaccggct cgccgttgtg
     2521 gaagccagta cgatgtttaa catcaacgcc ataggcggaa gtatcctgcg agatcaccag
     2581 aatctcttta acgcccgcat ctaccagacg tttcgcttca cttaacactt cgccaatcgg
     2641 acggctcacc aggtcgccgc gcatagacgg aataatgcag aaggtgcagc ggtgattaca
     2701 gccttccgaa attttcagat aggcataatg acgcggcgtc agtttcacac cttgttctgg
     2761 caccaggctc aggaatgggt tgtgtttcgg ttttggcacg tagtgatgaa cgtgctccag
     2821 aacctgctca tagctatgag gcccggtgat ttccagcact ttcgggtgga cttcgcggat
     2881 ctgatcttct tttgccccca gacaaccggt cacaattacc ttgccgtttt cattcaacgc
     2941 ttcaccaatg gcttccagtg attcttgtac cgcgctgtca ataaagccgc aggtgttgac
     3001 gatcaccatg tccgcatcgt catagctcgg taccacgtca taaccttcag tgcggagttc
     3061 ggtgagaata cgctctgaat cgacaaggtt tttcggacag ccaagggaaa caaagccgat
     3121 tttcggctgg ggagttactt tgctcatagc ttaaaaaata ttcagttaca ggaaaggtca
     3181 gggcagggat tctacagagt tctggataaa atttgtatcg caatctcatt cgctggcgga
     3241 ggcgaaggaa atgtaaattt tgttaattcg gcgtgaagaa ttgatcctgg acagcatttt
     3301 gctcaaaaaa tagccatact atttaattgc aacaaggctg gaaagaggag gatcgaagta
     3361 tgttcgttga cagacagcga atcgatctgc tgaaccggtt gatcgacgca cgcgttgacc
     3421 tcgctgcata cgtgcaactg aggaaggcaa aaggatacat gtccgtcagc gaaagcaatc
     3481 atctacgaga taactttttt aaactgaatc gcgaactgca cgataaatcg ctgcggttga
     3541 atcttcatct ggatcaggaa gagtggagtg ctcttcatca tgctgaagaa gcattagcga
     3601 cagccgcagt atgtttgatg agtgggcacc atgattgccc gactgttatt accgtcaacg
     3661 ccgataagct tgaaaattgt ctgatgagct taacgctgag tatccagagc ctgcagaagc
     3721 acgccatgct tgagaaggcc tgaaaactaa gggggagaaa gcgtctcccc cttcatgttt
     3781 aagtttttgt aaaaatgaat ttgttatctc ctccactgac tacgctttaa gccagagtca
     3841 atccggaggc g
//
LOCUS       DAJVUP010000245         3787 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.248, whole genome shotgun sequence.
ACCESSION   DAJVUP010000245 DAJVUP010000000
VERSION     DAJVUP010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3787
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.248"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..198)
                     /locus_tag="OQQ75_004080"
                     /pseudo
     CDS             complement(1..198)
                     /locus_tag="OQQ75_004080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            187..594
                     /locus_tag="OQQ75_004081"
     CDS             187..594
                     /locus_tag="OQQ75_004081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001501368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HCS1978213.1"
                     /translation="MRGRPVLFPNFSLGEEYEHAPPATNRQISPYLPSGRFRTGLPVE
                     GLAIERGDLFYACPRASVFYGTALDADLRTRGVSTLVMAGISTTGVVLSSVAWASDAD
                     YDVRLVQDCCYDPDRDAHEALLRSGFGGRVQVV"
     gene            732..1616
                     /locus_tag="OQQ75_004082"
     CDS             732..1616
                     /locus_tag="OQQ75_004082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCS1978214.1"
                     /translation="MSLRTPDLLFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALP
                     AGLLLVMIVRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLM
                     VVFISAALLGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGT
                     VLTRKWQPPVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAG
                     LTYFLWFRGISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWL
                     GQRSNRTPRARIACRKSP"
     gene            complement(1648..2847)
                     /gene="tet(A)"
                     /locus_tag="OQQ75_004083"
     CDS             complement(1648..2847)
                     /gene="tet(A)"
                     /locus_tag="OQQ75_004083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(A)"
                     /protein_id="HCS1978215.1"
                     /translation="MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH
                     YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG
                     RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
                     APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV
                     FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE
                     RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG
                     QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSG
                     AGQRADR"
     gene            2953..3603
                     /gene="tetR(A)"
                     /locus_tag="OQQ75_004084"
     CDS             2953..3603
                     /gene="tetR(A)"
                     /locus_tag="OQQ75_004084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(A)"
                     /protein_id="HCS1978216.1"
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWH
                     FRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAG
                     TRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGG
                     TVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
BASE COUNT          707 a         1166 c         1187 g          727 t
ORIGIN      
        1 ggagcgcagg gcgttcttca gctcggacag ggcgcagatt tcgtagaatt tccggtcgag
       61 gccttccggg gtgatcacca gcggcttcca gcgcggcttg atgaaggccg tgggtgcatc
      121 ggccggcacc ttgcgcaggt tgtcggcgtt catctcacgc agggtctgca cggctgccag
      181 cacgccttgc gcggccggcc cgtgctgttc cccaactttt cgctcggcga agagtatgaa
      241 catgcgccgc cggcgacgaa tcgccaaatc tcaccgtatc tcccgagcgg acgatttcgc
      301 accggtctgc ccgtcgaagg gcttgcgatc gaacggggcg accttttcta tgcatgtccg
      361 cgagccagcg tcttttatgg cacggcgctc gacgccgacc ttcggacgcg cggcgtaagc
      421 acgcttgtca tggccgggat aagcaccacc ggcgttgttc tttcaagcgt cgcctgggct
      481 agtgatgcgg actacgacgt gcgtttggtc caggactgct gctacgaccc ggatcgggat
      541 gcccacgaag ctctgttgcg ttccgggttc ggcggacgtg tacaggtcgt gtaattttcg
      601 ggcctcgcat gatcgcggcc atagccgcag gtggattggt gcgaggcagg gccagtccaa
      661 gtcagggtgc ggtcatcgcg gcgcctgcaa ctctcaaaaa cccatcgccg tagcggaggt
      721 cttgtaatcg catgtcatta cgcacgcccg atttattgtt cacagcgata gcacctgcca
      781 tttggggcag cacctacatt gtcaccaccc aatacctgcc gaacttctca ccgatgacgg
      841 tcgcgatgct gcgggcgttg ccggcgggtt tattgctcgt gatgatcgtc cgacagattc
      901 caacgggaat ctggtggatg cgcatcttca tcctcggcgc acttaatatt tcgctattct
      961 ggagcttgtt gtttatttcg gtctaccgcc tgccgggcgg ggtcgcggcg acggtaggcg
     1021 ctgtgcagcc gctgatggtc gtgttcatct ctgccgctct gctaggtagc ccgatacgat
     1081 tgatggcggt cctgggggct atttgcggaa ctgcgggcgt ggcgctgttg gtgttgacac
     1141 caaacgcagc gctagatcct gtcggcgtcg cagcgggcct ggcgggggcg gtttccatgg
     1201 cgttcggaac cgtgctgacc cgcaagtggc aacctcccgt gcctctgctc acctttaccg
     1261 cctggcaact ggcggccgga ggacttctgc tcgttccagt agctttagtg tttgatccgc
     1321 caatcccgat gcctacagga accaatgttc tcggcctggc gtggctcggc ctgatcggag
     1381 cgggtttaac ctacttcctt tggttccggg ggatctcgcg actcgaacct acagttgttt
     1441 ccttactggg ctttctcagc ccggggaccg ccgtgttgct aggatggttg ttcttggatc
     1501 agacgctgag tgcgcttcaa atcatcggcg tcctgctcgt gatcgggagt atctggctgg
     1561 gccaacgttc caaccgcact cctagggcgc gtatagcttg ccggaagtcg ccttgacccg
     1621 catggcatag gcctatcgtt tccacgatca gcgatcggct cgttgccctg cgccgctcca
     1681 aagcccgcga cgcagcgccg gcaggcagag caagtagagg gcagcgcctg caatccatgc
     1741 ccacccgttc cacgttgtta tagaagccgc atagatcgcc gtgaagagga ggggtccgac
     1801 gatcgaggtc aggctggtga gcgccgccag tgagccttgc agctgcccct gacgttcctc
     1861 atccacctgc ctggacaaca ttgcttgcag cgccggcatt ccgatgccac ccgaagcaag
     1921 caggaccatg atcgggaacg ccatccatcc ccgtgtcgcg aaggcaagca ggatgtagcc
     1981 tgtgccgtcg gcaatcattc cgagcatgag tgcccgcctt tcgccgagcc gggcggctac
     2041 agggccggtg atcattgcct gggcgagtga atgcagaatg ccaaatgcgg caagcgaaat
     2101 gccgatcgtg gtcgcgtccc agtgaaagcg atcctcgccg aaaatgaccc aaagcgcggc
     2161 cggcacctgt ccgacaagtt gcatgatgaa gaagaccgcc atcagggcgg cgacgacggt
     2221 catgccccgg gcccaccgga acgaagcgag cgggttgaga gcctcccggc gtaacggccg
     2281 gcgttcgcct ttgtgcgact ccggcaaaag gaaacagccc gtcaggaaat tgaggccgtt
     2341 caaggctgcc gcggcgaaga acggagcgtg gggggagaaa ccgcccatca gcccaccgag
     2401 cacaggtccc gcgaccatcc cgaacccgaa acaggcgctc atgaagccga agtgccgcgc
     2461 gcgctcatcg ccatcagtga tatcggcaat ataagcgccg gctaccgccc cagtcgcccc
     2521 ggtgatgccg gccacgatcc gcccgatata gagaacccaa aggaaaggcg ccgtcgccat
     2581 gatggcgtag tcgacagcag cgccggccag cgagacgagc aagaccggcc gccgcccgaa
     2641 acgatccgac agcgcgccca gcacaggtgc gcaggcaaat tgcatcaacg catacagcgc
     2701 cagcagaatg ccatagtggg cggtgacgtc gttcgagtga accagatcgc gcaggaggcc
     2761 cggcagcacc ggcataatca ggccgatgcc gacagcgtcg agcgcgacag tgctcagaat
     2821 tacgatcagg ggtctgttgg gtttcacgtc tggcctccgg accagcctcc gctggtccga
     2881 ttgaacgcgc ggattcttta tcactgataa gttggtggac atattatgtt tatcagtgat
     2941 aaagtgtcaa gcatgacaaa gttgcagccg aatacagtga tccgtgccgc cctggacctg
     3001 ttgaacgagg tcggcgtaga cggtctgacg acacgcaaac tggcggaacg gttgggggtt
     3061 cagcagccgg cgctttactg gcacttcagg aacaagcggg cgctgctcga cgcactggcc
     3121 gaagccatgc tggcggagaa tcatacgcat tcggtgccga gagccgacga cgactggcgc
     3181 tcatttctga tcgggaatgc ccgcagcttc aggcaggcgc tgctcgccta ccgcgatggc
     3241 gcgcgcatcc atgccggcac gcgaccgggc gcaccgcaga tggaaacggc cgacgcgcag
     3301 cttcgcttcc tctgcgaggc gggtttttcg gccggggacg ccgtcaatgc gctgatgaca
     3361 atcagctact tcactgttgg ggccgtgctt gaggagcagg ccggcgacag cgatgccggc
     3421 gagcgcggcg gcaccgttga acaggctccg ctctcgccgc tgttgcgggc cgcgatagac
     3481 gccttcgacg aagccggtcc ggacgcagcg ttcgagcagg gactcgcggt gattgtcgat
     3541 ggattggcga aaaggaggct cgttgtcagg aacgttgaag gaccgagaaa gggtgacgat
     3601 tgatcaggac cgctgccgga gcgcaaccca ctcactacag cagagccatg tagacaacat
     3661 cccctccccc tttccaccgc atcagacgcc cgtagcagcc cgctacgggc tttttcatgc
     3721 cctgccctag cgtccaagcc tcacggccgc gctcggcctc tctggcggcc ttctggcgct
     3781 cctgctg
//
LOCUS       DAJVUP010000246         3738 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.249, whole genome shotgun sequence.
ACCESSION   DAJVUP010000246 DAJVUP010000000
VERSION     DAJVUP010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3738
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.249"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..860)
                     /locus_tag="OQQ75_004085"
     CDS             complement(<1..860)
                     /locus_tag="OQQ75_004085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000094541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS1978217.1"
                     /translation="MSSHFTPFTLKDISRPGGGFAMLAVDQREAMRLMFAAAGQPKPI
                     ADSVLTDFKVAATRILSPYASAVLADKQFCLEQIVEQGAVANSCGLIVAADLFIPGNG
                     IPVDSVEIDMSVDPHKAREMGAKAMKLLVLWREDEPAEERLAMVDKFVRRCRSAGLVS
                     IIEPVVRPPRRGWDFDRESAIVAAAAELGGTEADLYKAEMPLGGKGDEKTLLAACQQL
                     NDQMKMPWVILSSGVDADIFGRAVSIAMKGGASGFLAGRAVWASVVGAQDPQTMLRDV
                     SVPRLQRLAE"
     gene            complement(885..1763)
                     /gene="yihU"
                     /locus_tag="OQQ75_004086"
     CDS             complement(885..1763)
                     /gene="yihU"
                     /locus_tag="OQQ75_004086"
                     /EC_number="1.1.1.373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
                     /protein_id="HCS1978218.1"
                     /translation="MATIAFLGLGQMGSPMANNLLQKGHSLQVFDVNAQAVDALVTQG
                     ATAAQTQAEAAAGAEFIITMLPNGDIVRQVLLGEKGVCEAVSSDALLIDMSTIHPLQT
                     DALIRELQEKGISMMDAPVGRTSVNAIDGTLLILAGGTDEQIARARPILMCMGNELVE
                     AGGPGMGIRVKLINNYMSIALNALSSEAAVLCESLGLNLDVAIKVMSGTAAGKGHFTT
                     TWPGKVLKGDLSPAFMVDLALKDLRIAVDVARETGTPLNMGIAAESYYAAASQDGKGR
                     QDWSALLNQVRQQAGL"
     gene            1936..2832
                     /locus_tag="OQQ75_004087"
     CDS             1936..2832
                     /locus_tag="OQQ75_004087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1978219.1"
                     /translation="MTRIACVGITVQDRIYSLPTLPEGGGKYQANHYLEIGGGPAATA
                     AVAIAKLGVEVDFIGRVGDDSCGNTLLAELEGWGVNTAFCRRYPNARSSQSAILVDQH
                     GERIIVNYPSPDLGTDAEWLEAIDFSRYNLILADVRWHSGTEKAFSLARLAGVTTLLD
                     ADMTPQDISPLVALADHAVFSTPGLKRMTGLQSPEEGLFQATTQTAGKVYVTLGSEGS
                     LWIEDGHLCQQEAFSVNVVDTTGAGDVFHGALAVALAEKMPTKEAIRFASAVAAMKCT
                     QPGGRAGIPNREQTESFLSLYA"
     gene            2872..3660
                     /locus_tag="OQQ75_004088"
     CDS             2872..3660
                     /locus_tag="OQQ75_004088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1978220.1"
                     /translation="MSIIEVTGNPRHDQLVHLIAERGYMNIEELAQLLDVSTQTVRRD
                     IRKLSEQGLITRHHGGAGRVSSVMNTAFEQRELSLTAEKRAIAEAVADYLPERCTVFI
                     TIGTTVEAVARALLNRRDLRIITNSLRVAQILYKNQDIEVMVPGGTLRAHNGGIIGPG
                     AVDFIEGFRADYLITSIGAIEHDGTLLEFDLNEALVARTMIKHARNTLLVADHTKFAA
                     SAAVSIGNARNVRAFFTDAPPPNSFCQLLSEENVELVVAEQEVS"
BASE COUNT          962 a          955 c          903 g          918 t
ORIGIN      
        1 atttctgcca accgttgtaa acgaggaaca gagacatcgc gcagcatagt ttgtggatct
       61 tgtgcaccaa caaccgacgc ccaaaccgct cgtccagcca ggaagcccga cgcaccacct
      121 ttcatggcaa tacttactgc acggccaaaa atatcggcat caacgccaga agaaagaatt
      181 acccacggca tcttcatctg atcgttaagt tgctgacagg cggcaagtaa ggttttttca
      241 tcgcctttgc cccctaatgg catctcggct ttgtaaagat cagcctctgt tccaccaagc
      301 tctgcggcgg cggcaacaat ggcgctttca cgatcaaagt cccaaccgcg acgaggtgga
      361 cgcaccacag gttcaataat gctcaccagc ccggcactac ggcagcgacg aacaaattta
      421 tcaaccattg ccagacgttc ctctgcgggt tcatcttcac gccagagtac aagtaatttc
      481 attgccttag cccccatttc acgggcttta tgcgggtcga cggacatatc tatttcaacg
      541 ctatcaaccg ggatgccatt acctgggata aaaagatcgg cagcgacaat caggccgcaa
      601 gaattagcaa cagcgccctg ctcgactatt tgctcaagac aaaattgttt atccgccaga
      661 acggcagaag cataaggaga aaggattcgg gtcgcggcaa ctttaaaatc ggtgagtaca
      721 ctgtcggcga tgggttttgg ctgccctgct gccgcaaaca tcaagcgcat ggcctcacgc
      781 tgatcgacag ctaacatggc aaatccacca cctgggcggg agatatcttt cagcgtaaat
      841 ggggtgaagt gggatgacat agaaactcct gttaatagat aaaattaaag accagcctgc
      901 tggcgaacct gatttagcag ggcactccag tcctgccgcc ctttgccgtc ttgacttgct
      961 gcagcgtaat aactttctgc tgcaatcccc atattgagcg gtgtccccgt ctcccgagcg
     1021 acgtcaactg caatacgcag atctttcaac gccagatcca ccatgaaggc gggtgaaaga
     1081 tcgcctttca gcactttgcc aggccaggtg gtcgtaaaat gtcctttccc tgctgccgta
     1141 ccactcatca ccttaattgc gacatcaaga tttaatccca gtgactcaca taacacagcg
     1201 gcctcggagg acagcgcatt aagcgcaatg ctcatatagt tgttaattag cttcacgcgg
     1261 atccccattc ctgggccgcc agcctcgacc agctcattac ccatgcacat aagaatcggg
     1321 cgtgcacgtg caatctgctc atcagtgcca cccgctaaaa tcagcaatgt gccatcaatc
     1381 gcattcacgg acgttctgcc cacgggagcg tccatcatac tgatgccttt ttcttgtaac
     1441 tcccgtatta atgcatcggt ctgtaaggga tgaatagtcg acatatcaat caataacgcg
     1501 tcagatgaaa cagcctcaca gacgcctttt tcccccaaca gaacctgtcg aacaatgtca
     1561 ccattgggaa gcatagtgat gataaattca gcgcctgctg ctgcttccgc ttgggtttgt
     1621 gccgcagtgg ccccctgcgt aactagcgca tcgacggcct gtgcattgac atcaaatacc
     1681 tgcaatgaat gccctttttg caatagattg ttagccattg ggctacccat ctgccccagc
     1741 ccgagaaatg caatggttgc catgaatact ctcctgtctg acattgacaa aataatgaca
     1801 attgaaaatt cgtttttgtc tgtttttgag catatttgtg atttatgttc aaaaacacga
     1861 cacgcatcac taatttgatc atttgcgtca tttaaattga ccaaagacga caaaattaaa
     1921 caggacaaga caaatatgac cagaattgca tgcgtgggta tcacagttca ggacagaatt
     1981 tattctttgc ccactctgcc ggagggcggc gggaaatatc aggcaaatca ttatcttgag
     2041 attggtggcg gcccggcagc aacagccgct gttgcaatcg caaagcttgg cgtggaggtt
     2101 gatttcatcg gtcgcgtcgg cgatgacagt tgtggaaata ccttacttgc agaacttgag
     2161 ggttggggcg tcaataccgc attttgccgc cgatatccta acgcccgttc gtcgcaatca
     2221 gcgatcctcg ttgatcagca tggcgaacgg attatcgtta attatccaag tcctgatctc
     2281 ggtactgatg ccgaatggtt agaagcgatc gatttctctc gttataatct gattctggcc
     2341 gatgttcgct ggcatagcgg tactgaaaaa gcattctcgc tagcgcgcct tgcgggtgtg
     2401 acaacgcttt tagacgccga tatgacaccg caggatattt ctccacttgt cgcgcttgcc
     2461 gatcacgccg tgttctcaac accagggctg aaacgcatga ctggcctgca gtctcctgaa
     2521 gaaggtttgt tccaggcaac gacacaaaca gcaggtaaag tgtatgttac gctgggttct
     2581 gaaggatcgt tgtggattga agatggtcat ttgtgtcaac aggaggcatt ttctgtcaat
     2641 gtggttgata ccactggagc aggcgatgtt tttcacggcg cactcgcggt agcgttggca
     2701 gaaaaaatgc caacaaaaga ggctattcgt tttgccagtg cggttgccgc gatgaaatgt
     2761 acccagcctg gcggtcgggc cggcattcct aatcgtgagc aaaccgaatc atttttgtca
     2821 ctttatgcgt aaaatggtaa acatctaccg aggaggggca agggagtatt catgagtatc
     2881 atcgaagtga caggtaatcc acgccatgac caactcgttc atctaatcgc agaacgcggt
     2941 tatatgaata ttgaagaact ggcacaactg ctggatgttt caacgcaaac cgtgcgccgg
     3001 gatatccgaa aactcagtga gcagggcttg atcacccgtc atcatggagg ggccgggcgc
     3061 gtctccagcg tcatgaatac cgcttttgag caacgggaac tttcgctcac cgccgagaaa
     3121 cgggcgatcg ctgaggcagt cgccgattac cttcccgaac gctgtaccgt ctttatcacc
     3181 atcggtacaa ccgtagaagc cgttgccagg gcattactca accggcgtga tttacgcatt
     3241 atcactaaca gcctacgtgt ggcacagatt ctttataaga atcaggatat tgaagtgatg
     3301 gtgccgggag gcactttacg cgctcataac ggcgggatta tcggcccagg agccgtggat
     3361 tttattgaag gcttccgcgc agattattta atcaccagta taggtgccat tgaacatgac
     3421 ggcaccctac tggaatttga tctaaatgaa gcgttagtcg cgagaacgat gattaaacat
     3481 gcgcggaata cattgttagt ggccgatcat acgaagtttg ccgcgtctgc tgccgtttca
     3541 attggcaatg cacggaatgt cagggctttt tttactgatg ccccgcctcc caattctttc
     3601 tgccagttgt taagtgaaga gaatgttgaa ctggtggttg ccgagcaaga agtatcctga
     3661 aattgaaatt tcggaaaatc cgctgggaat ttcagcggat tttgttttcc ataagcaaaa
     3721 aaaacctgcc agcgatgg
//
LOCUS       DAJVUP010000247         3721 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.250, whole genome shotgun sequence.
ACCESSION   DAJVUP010000247 DAJVUP010000000
VERSION     DAJVUP010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.250"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            35..262
                     /locus_tag="OQQ75_004089"
     CDS             35..262
                     /locus_tag="OQQ75_004089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1978221.1"
                     /translation="MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDS
                     AWRYVTILDLPFSLVFDTLLLPIDIHHGPYE"
     gene            complement(263..637)
                     /locus_tag="OQQ75_004090"
     CDS             complement(263..637)
                     /locus_tag="OQQ75_004090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309456.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HCS1978222.1"
                     /translation="MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQD
                     GDIMWQVEFFADEGEEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE
                     FQLEPPLDTEEGRAAADEWDER"
     gene            complement(720..1944)
                     /gene="mdtG"
                     /locus_tag="OQQ75_004091"
                     /pseudo
     CDS             complement(720..1944)
                     /gene="mdtG"
                     /locus_tag="OQQ75_004091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtG"
     gene            complement(2116..3036)
                     /gene="lpxL"
                     /locus_tag="OQQ75_004092"
     CDS             complement(2116..3036)
                     /gene="lpxL"
                     /locus_tag="OQQ75_004092"
                     /EC_number="2.3.1.241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) lauroyltransferase"
                     /protein_id="HCS1978223.1"
                     /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGL
                     GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR
                     RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL
                     IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ
                     AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV
                     VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY"
     gene            3261..3721
                     /locus_tag="OQQ75_004093"
                     /pseudo
     CDS             3261..3721
                     /locus_tag="OQQ75_004093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415573.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
BASE COUNT          915 a          951 c          944 g          911 t
ORIGIN      
        1 ttatgccggt atttttttac ggaagaggta tcaaatgcgt ttaattgtgg tgagcatcat
       61 ggtgaccttg ctgagtggct gtggcagcat tattagtcgc actataccgg ggcaggggca
      121 tggcaaccaa tattatcccg gtgtgcaatg ggatgtgcgt gactccgcct ggcgttatgt
      181 cacaatcctt gatctgccat tctccctggt ttttgatact ttactgctgc cgatcgacat
      241 tcatcatggc ccgtatgagt gattaacgtt catcccactc atcagctgct gcgcgtcctt
      301 cctcggtatc cagcggtggc tcaagctgaa attccccctc gtcccattca tgtaatgtat
      361 tctcttcctg ccactcctgg cgtatctcta tctcatcata gtcgccatca aaaacacttt
      421 gcgcggcttc accgctaagc ataggtaaac attcaccttc ttccccttcg tcggcaaaaa
      481 actcaacttg ccacatgatg tcgccgtcct gcaaaacgta tttttgggca ttgaactgtt
      541 gcacattcgc atcttcggcg tcgatgccgg ggttgtctgc aagaaattct tcgcgtgcag
      601 cgtcaatggc ttcttcaagc gttgcgtaca tggtcatcac gattctccct ttgagttgat
      661 gaggtttcag ggaaaaggat agctgattct ccgcttttgc aagtatgaaa ggcgaaaaat
      721 cagttcgata cctggggtat tcgacgacga cgtagactgt tccatgaata gactgcgttg
      781 aataacacta cgccagcggt gacgagaaat accgctctga aaccgtagtt cgctgaaatc
      841 gctgctccca tcaatggtcc ggtaacgttg ccaatatcac gaaacgattg gttatagctg
      901 aagatacgcc cggcgatctg gttgctcgag ttgtaaacca acaatgtctg tacggcgggg
      961 agtagtgcac catcggcggc accgagcaaa aaacgtaaaa tcccaagttg caatggcgtc
     1021 tgaacgtaag acattgggat caacagcagt acagaaaaga tcagcgctgt aatcaggatc
     1081 ttttcgggtc cgattcgatc gccaagtttg ccgagtcgtg gtgcacttag cagagccgcc
     1141 acgcctggca ccgaggcgat catgccactg ataaaggcga cgttactgac gttacccgcc
     1201 agttcgcgga catacagcgt cagaatgggg gcaattgagc ccgtcgccac ctggatgatt
     1261 aacgtagtga caaacaggct gagtaccagt ttcgggtttt taagtgatgt caccacttcc
     1321 cgcatgtgca gcatctcttt tttgctgacc ggctggaatt tttctctgat gcaaaacagg
     1381 gtgacgaaaa agcagagtat gagcacactg gtggtaataa agaataccgg acgtaagccg
     1441 tagctatcgg cgagcaggcc gccagccatt gggccgagca acgcaccacc aacgccgcct
     1501 gtggagagcg tacccagcgc ccagccgctt ttattacgcg gtacttgtgt ggcgataaga
     1561 gcattagcgt tggggacaaa tccgccaagt aacccaagaa gcgcccgcag gatcaaaaac
     1621 tgccagatat tttgtgccag ccccatcaac accatcacga tgcccatgcc gagggcagag
     1681 cgtaatagca tgagttttcg gcctttacgg tcggcgagtc caccccaaaa cggtgaggcg
     1741 atggccgaaa ataaaaatgt aatgctgaag acaataccgg accatattca gggcggagtg
     1801 accggtaacg ccaagctgct caacgtagag gggtaagaag ggcattacca gactgaaggc
     1861 ggcaccggta agaaaacagc ctagccaggc gacgatcagg tttcgtttcc agtttatagg
     1921 ggtgtcattt tcacagggtg acatagcaat ccgctgttgg tgcgccaggc gcggtgaaca
     1981 taagaagaaa agataagcac actaattatg cgcccgactt ccagggggcg caatccagag
     2041 agcttttatc gctaaatcag ggggatttgc tgtggtaatg ccggatgcca ttctgaagca
     2101 tccggcaggg gagatttaat agcgtgaagg aacgccttcc gggcgtgttt taaagcgacg
     2161 gtgtaaccac atatactgct ctggtgccat catgatgcat ttttcgacca ctttgttcat
     2221 ccacgcggcg gtagtttcgg catcatccag tggcggagaa cactctggcg gcagcataat
     2281 caattgatac cctttgccat ctggcttacg gcgtggaacg aagggcacca gacatgcgcc
     2341 ggacatccgt gccagcatcc aggttccggt cgtggtcgca gcctgctcaa cggcaaataa
     2401 cgggacgaaa acgcttgagc gcgggccgta atcatgatcc ggtgcgtacc agaccacttc
     2461 gccttttttc agggctttaa tcatgccttt taaatctttg cggtcgagca tcgatttatt
     2521 tgagcgcaaa cggccccagg tttgtagcca gtcaatcagt ggattatcgt tcgggcggta
     2581 aacgccaatc cccggttcct gcataccaaa ctgccgcgca cccagctcca gtgtcagaaa
     2641 atggatgcca actaacagga tgccgcgttt ttgcgcctgc acgtcacgaa tgtgttccat
     2701 gccgatcact tccgtccagc gcgcgattcg gcggtccggc cagaaccacg ccatgccggt
     2761 ttccatcagg cccatgccaa cggattcgaa attcttcacc accattttac ggcgttcttg
     2821 ttcgctcatt tccgggaagc acagttccag gttgcgatgc acaatttttg cgcgtcgttt
     2881 cataaaacgt aacgccagtt ttcctaatcc acaaccgagg cggtagataa ccgggtaggg
     2941 caattgcacg actaaccaaa gtacgccaat acccaaccag gttaaccaat aacgcggatg
     3001 aagcagtgcg gtggagaact tgggtagatt cgtcatatca atcctgtttt tcaacctatt
     3061 cgggcaattg tatgtattgt cgcatttttt cgcccgcaac caaaatttgt ggctgaagac
     3121 tgggcgaaat tgccgcgctt gtaaataaca aataattttt aatgcgcaaa tgtagcgtaa
     3181 aatgtgtgga tgttaattat cgataattgc tatatcatgc cgcggatttt tactttccca
     3241 tctcgcagga accgtacacc atgccagtgt tacacaaccg catttccaac gacgcgctaa
     3301 aagccaaaat gttggctgag agcgaaccgc gaaccaccat ttcgttttac aagtatttcc
     3361 acatcgccga tcctaaggcg acccgtgacg ctttatatca gctgtttacc gcgctgaatg
     3421 tttttgggcg agtgtatctg gcgcatgagg gcattaacgc gcaaatcagc gtacctgcga
     3481 gcaatgttga aacatttcgc gcgcagctct gccttcgacc cggctttaga gggtttacgc
     3541 ctgaatatcg cgttggatga tgacgggaaa tccttctggg tactgcgcat gaaggtacgt
     3601 gatcgcattg ttgccgacgg tattgacgat cctcactttg atgccagcaa tgttggtgag
     3661 tatctgcaag cggcggaagt gaacgccatg cttgacgatc ccgatgcact atttatcgac
     3721 a
//
LOCUS       DAJVUP010000248         3719 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.251, whole genome shotgun sequence.
ACCESSION   DAJVUP010000248 DAJVUP010000000
VERSION     DAJVUP010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.251"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(120..2189)
                     /gene="glyS"
                     /locus_tag="OQQ75_004094"
     CDS             complement(120..2189)
                     /gene="glyS"
                     /locus_tag="OQQ75_004094"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HCS1978224.1"
                     /translation="MSEKTFLVEIGTEELPPKALRSLVESFAANFTVELDNAGLAHGT
                     VQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV
                     DQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP
                     VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD
                     YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA
                     LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF
                     NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYACHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC
                     ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV
                     RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA
                     VSHFRTLDAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDK
                     LEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRV
                     ADISLLQ"
     gene            complement(2199..3110)
                     /gene="glyQ"
                     /locus_tag="OQQ75_004095"
     CDS             complement(2199..3110)
                     /gene="glyQ"
                     /locus_tag="OQQ75_004095"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HCS1978225.1"
                     /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL
                     KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
                     GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF
                     LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI
                     RTLTKAVAEAYYASREALGFPMCNKDK"
     gene            complement(3205..3504)
                     /locus_tag="OQQ75_004096"
     CDS             complement(3205..3504)
                     /locus_tag="OQQ75_004096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsaB family lipoprotein"
                     /protein_id="HCS1978226.1"
                     /translation="MMMNAFFPAMALMVLVGCSTPSPVQKAQRVKVDPLRSLNMEALC
                     KDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR"
BASE COUNT          861 a         1007 c          956 g          895 t
ORIGIN      
        1 ctcataaaat taatatatga gataatcttt attcagcaga agattattaa aggttgctgt
       61 attatttagc gataataaaa aaagcctgcc agatggcagg ctttttaata acggcgttat
      121 tactgcaaca gcgaaatatc cgcaacgcgc aggaacagtt cgcgcagttt ctccagcatg
      181 gtcagacggt tgagacgcaa ttctttgtca tcaaccatga ccatcacttt atcgaagaaa
      241 gcatcaaccg gctcacgcag ctctgccagt tcgaccagcg catcctggta acgaccttcc
      301 gcaaagtacg gctccagctt gtcacgtagc accacaacct gcatcgccag tttaatttct
      361 tccggctctt tcagggtaga ggcattcacg cggtcgctca gcacttcgtc agatttcgcc
      421 agaatgttag atacacgttt gttcgccgcc gccagtgcag cagctgcatc cagggtacgg
      481 aaatgcgata ccgctttcat acgggcatcg aaatcagccg gacgagtcgg acgacgcgcc
      541 agtaccgcct ggatggtgtc aacggtgtaa ccttcgtcct gataccaggc gcggaagcga
      601 ccgagcataa agtcgataac atcatcaacc acgttggcgt tagtcagctt atcgccatac
      661 agacgcactg cttcttcggt cagcgtttgc agatcaaggt tgaggttctt ctcaacgata
      721 attcgcagca cgccaagtgc ggcacgacgc agcgcaaacg ggtctttgtc gcctttcgga
      781 tgctgaccga taccgaagat acccgccaga gtatccatct tatcagcaat cgccagcgca
      841 caagctaccg ggttggacgg caggtcatca ccggcaaagc gcggctgata ctgctcattc
      901 agcgcgacgg ctacgtcttc cgcttcgcca tcgtgacacg cgtagtgcat ccccataacg
      961 ccttgggtgt cggtgaactc gaagaccatg ttggtcatca ggtcacactt agacagcagg
     1021 cccgcacggg ttgcgtggtt aacgtcagcg ccaatctgtt cagcaatcca gccagccagc
     1081 gcctggatgc ggtcagtttt gtcacgcagc gtacccagct gttgctggaa cagcacggtt
     1141 tgcaggcgcg gcaggttatc ttccagacgt tttttacggt cggtattgaa gaagaactcg
     1201 gcatccgcca gacgtggacg aacgactttc tcgttaccag agataatttg ctgcggatct
     1261 ttcgattcga tgttggcaac gaagatgaag ttcggcagca gtttgccatc gttcgcatac
     1321 accgggaagt atttctggtc acctttcatg gtgtaaacca gggcttcagc cggcaccgcg
     1381 aggaatttct cttcgaattt tgcggtcaga acgaccggcc actccaccag cgaagccact
     1441 tcttccagca ggctttcgct taagtcagcg ttaccgccaa tcttacgcgc tgcttcttcg
     1501 gcatcggctt taatcttcgc tttacgttct tcgtaatcgg cgatgacttt cccgcgctca
     1561 cgcagaattt ccggatactg atcggcgttg tcgatggtga attccggttc gcccataaag
     1621 cggtggccgc gaatcacgcg atcggactga atgcccagaa tagttgccgg aatgactttg
     1681 tcgcccagca gcagggtcac ggtgtgcacc ggacgcacga agtgcacgtc gcttgcgccc
     1741 caacgcatca gtttcgggat cggcagtttc gccagagaag tcgcaaccat attcggcagc
     1801 agtgcttcgg tgctttcgcc cttcacatgg gcgcgataca gcagccattc gcctttatcg
     1861 gtagtcagac gctcagcctg gtcaacggta ataccgcaac cacgcgccca accttctgcc
     1921 gctttgctcg gtttgccttc agcgtcgaac gcctgggcaa tcgccgggcc gcgtttttcg
     1981 atttcacgat ccggttgcgc ttccgccagg ttagctactt tcagcgccag acgacgcgga
     2041 gcagcaaacc attgaacggt gccgtgtgcg aggccagcgt tatccagctc cacagtaaaa
     2101 ttcgcagcaa aggactcaac caggctgcgc agtgcttttg gtggcagctc ttcagtgccg
     2161 atttccacca gaaaagtttt ctcagacata gccgcctctt acttatcttt gttgcacatc
     2221 gggaagccga gggcttcacg ggaagcgtag tatgcttctg ccactgcttt ggtcagggtg
     2281 cgaatgcgca gaatgtagcg ctgacgctcg gtgacggaga tggctttacg cgcatccagc
     2341 aggttgaagc tgtgggcggc tttcagaata cgctcgtagg ctggcagcgg cagcggattt
     2401 tccagcgcca gcagctgctg cgcttctttc tcgtactgct caaagcaggt gaacaggaag
     2461 tccacatccg cgtattcgaa gttgtaagtg gactgctcca cttcgttctg atggaacacg
     2521 tcgccgtagg tggttttacc cagcgggccg tcgctccaga ccaggtcgta aacgctgtct
     2581 acgccctgaa tgtacatggc cagacgttcc agaccgtagg tgatctcgcc ggtaaccggt
     2641 ttacactcca gaccaccaac ctgctggaag taagtgaact gcgtcacttc catgccgttt
     2701 agccacactt cccagcccag tccccaggca cccagagtcg ggttttccca gttatcttcc
     2761 acgaaacgga tgtcgtgaat agtcgggtcc atgcccagct ctttcagaga accgaggtac
     2821 agctcctgaa tattgtccgg cgatggctta atgaccacct ggaactgata gtagtgctgt
     2881 aaacggttgg ggttttcgcc gtagcgacca tcggtcgggc gacgagaagg ctgaacataa
     2941 gcagccgcca tcggttctgg ccccagcgcg cgcagacagg tcattgggtg agaggttccc
     3001 gcgccgactt ccatgtccaa tggttgaaca atggtgcagc cctggcgagc ccagtaatcc
     3061 tgtaaggtca ggatcaagcc ctggaaggtc ctggtatcaa acttttgcat attatttcgt
     3121 gctggatacg tgtggattta aaggaaggga tcagtatacc cgctggatgg aagatataca
     3181 gtacgaaacg ggaaaaagca gggcttaacg catggaaaga tgcaaaaaat ggccatctgc
     3241 gtcaaaagaa cagacaaact gctctttacg gaaggtataa ccgcgcattt catagcttcc
     3301 ctggaactgt tcgaaggcgg tgacgtcgat tttttgctcg ccggtgttat aacgttttgc
     3361 cgcctgatcc ttgcataacg cttccatatt caacgaacgc agaggatcaa cctttacccg
     3421 ttgtgctttc tgcacgggtg acggtgtaga acaacccact agcaccataa gcgccattgc
     3481 cggaaagaaa gcgttcatca tcattaaatt accgtctggt ttgcaggtga gtcttattat
     3541 ttatatcggt atagtggctg atatcttacg aatttcctta agcctctata agctgtagtg
     3601 ataaaactca gattattcca gtgcgccaac caaatgattt atcggtcaga ctttttttaa
     3661 ccagatacag agacacagat gcaggtaatg ctgccaactt actgatttag tgtatgatg
//
LOCUS       DAJVUP010000249         3675 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.254, whole genome shotgun sequence.
ACCESSION   DAJVUP010000249 DAJVUP010000000
VERSION     DAJVUP010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.254"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(279..566)
                     /locus_tag="OQQ75_004097"
     CDS             complement(279..566)
                     /locus_tag="OQQ75_004097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebO family protein"
                     /protein_id="HCS1978227.1"
                     /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE
                     LLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSVDDEDIIRLVAER"
     gene            complement(641..784)
                     /gene="mgrB"
                     /locus_tag="OQQ75_004098"
     CDS             complement(641..784)
                     /gene="mgrB"
                     /locus_tag="OQQ75_004098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP/PhoQ regulator MgrB"
                     /protein_id="HCS1978228.1"
                     /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF
                     IPW"
     gene            943..1182
                     /locus_tag="OQQ75_004099"
     CDS             943..1182
                     /locus_tag="OQQ75_004099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978229.1"
                     /translation="MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLT
                     ARGTSTVQYLHTKSGFLGITDCPLLRKSNIVVDNG"
     gene            complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="OQQ75_004100"
     CDS             complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="OQQ75_004100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator KdgR"
                     /protein_id="HCS1978230.1"
                     /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS
                     KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREISR
                     LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV
                     KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFG
                     VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF"
     gene            2293..3666
                     /locus_tag="OQQ75_004101"
     CDS             2293..3666
                     /locus_tag="OQQ75_004101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1978231.1"
                     /translation="MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIAT
                     DLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSD
                     SLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIA
                     AAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLL
                     ITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICT
                     SVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAG
                     LLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRE
                     RSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRI
                     TQPRSRA"
BASE COUNT          922 a          902 c          811 g         1040 t
ORIGIN      
        1 taaaataaga aaaattgatg aatgagcaaa aaaatcaaga gagaaacgtt tcgctaataa
       61 ataataccac gcttaatcac aaatccgatg taaacatcct aataaattaa tgaggaaaat
      121 atctttttct gatatcccgt tacgcaaata aataatatga taattatttg aagtcagacc
      181 agagttttaa tttgaagcag ttgcaccatg acagtgcgta taatcaggat gaattgagta
      241 acccttcaac gacggggtta ctcaagattg aggaaggatt atcgttcggc gaccaggcga
      301 ataatatctt cgtcatcaac cgatttttga ctctcaatgg tctttttatc tgctttctct
      361 ggttcgtttg cttcgcacaa acgacgtaaa agtgcatttt gacgtttttg ctgatccagc
      421 aacgcctcaa gcagttcaat ctgttcgtta gtccgtgaac tggcacgatt gataaaaaac
      481 cacaagatga gcccgataag aagaactacc accgatacaa ccaaagacgc aatgttcatc
      541 acgcctgaat ttacaacttc gttcatttca ccacctctga gtagaggcgc tattctacca
      601 ctgctggaga ggaagaaaat ctagtgctga aaaaatgata tcaccacggg ataaactggt
      661 taatggcaca aattccgctg aaaaattgta catcctgatc gcacatcatg ttgaatacct
      721 gcgcccaaag cagcaagcaa gccaacacca cgacaaccag aacgacccat cgaaactttt
      781 tcactccaat ctccgcttca cctaccttat gtcattaaac tagcatgcgt tagttaaaca
      841 gcgcctaact atgtcgatat tcgtgctttt tcggaatgag tagcttgctt cagcgcatat
      901 tgccgctacg attaagcgaa cataaaaaga gaagaggttg taatgcgatt catcattcgc
      961 acagttatgc tgatagcact ggtatggata ggattattac tcagcggata tggcgttttg
     1021 attggaagca aagagaatgc cgcaggatta ggtttgcaat gtacctatct gactgccaga
     1081 ggcaccagca cggtacaata cttgcacact aaaagtggtt tcttggggat aacagattgc
     1141 ccactgttac gtaaaagcaa tatcgtggtc gataatggtt aagggtaata aataaccaga
     1201 ttctcactca tgagtaaaat attcttatag caagcgcgtt taatataacg caccttcaac
     1261 tttatttttc tcatgctaaa taaagaacct gtctgtttga tattccgaca ggttcttact
     1321 ctcatcagaa cggatagtcg tgataaccca tttgggcaga aattttgcgc gctgcggtat
     1381 gcaacattgc gacatattcc tgtaaacgct cttcagagaa acgcaacgtc gggaaggaga
     1441 tgctcaaacc ggcaatgacc acgccaaagc gatcaaatac cggtaccgca atgcatcgca
     1501 gcccttcttc ctgctcttcg ttatcttcgc catacccctg ctcgcgcacc tggtccagaa
     1561 cgggtaataa cgcttctgta ctggtgatgg tccgctcggt actgcgttta tactccacgc
     1621 cctcaagaat ttgcttcact tcatcgcgat cgcgccatgc cagcagtacc ttaccaatcg
     1681 cggtgctgta cagcggatta cgacgcccaa tccgtgaata catgcgcaaa ttgtacatag
     1741 agtcaatttt gtgaatgtaa acaatactgt cttcgtccag tgcgccgagg tggatagttt
     1801 ctttggtcag gcgggagatc tcacgcatct ggatatctgc gctacgaatt aaatcgacgt
     1861 tttgtaacgc gcgagcgccc agttcaaaca atttcagggt cagggaatat ttctccgact
     1921 ccccttcctg cgccacataa cctaaggttt tcatggtctg taaaaagcga taaacggtgc
     1981 tttttgacat catgacgcgc tgcgacagct cggttatccc tatttcgcgc tcttcaccca
     2041 gcgcctgcaa aatgccaaaa acttttagca cggaagatac agaatcaggc tgtttatcca
     2101 gatctgcgtt agccatttat cacctcattg cgagtgtttt ataaaaatca gaactgtttt
     2161 ttattataat ttcgcaccag gggggtcgca atccatcttt tgccggttag ttacaattct
     2221 gcgacatcca ccgtgaatat cagtgctaga atcatacccc tgttgattat tcaccaaaga
     2281 tataaaattc ctatgccaaa agttcaggcc gacggcctgc cattgcccca gcgatacggt
     2341 gcgatattaa ccattgtgat tggtatttcg atggctgtcc ttgacggcgc aatcgccaac
     2401 gtcgccctgc caacaatcgc cacggacctt catgccacgc cagccagttc catctgggta
     2461 gtgaacgcct atcaaatcgc cattgtcatc tccctgctct cgttttcgtt tctgggcgat
     2521 atgtttggct atcgacgtat ttataaatgc ggtctggtcg tttttctgtt gtcttcactg
     2581 ttctgcgccc tttctgattc gctgcaaatg ctcacccttg cgcgtgtcat acaaggtttc
     2641 ggcggtgcag cgttgatgag cgttaatacc gcacttatcc gcctgatcta tccacaacgt
     2701 tttctgggga gagggatggg cataaactcg tttattgttg ccgtctcttc tgctgccggg
     2761 ccgacaattg ctgcagcaat cctctccatc gcatcctgga aatggttatt tttaatcaac
     2821 gtaccgttag gtattatcgc cctgcttctg gcgatgcgtt ttctgccacc caatggttct
     2881 cgcgccagta aaccccgttt cgacctgccc agcgccgtga tgaacgcgtt aaccttcggc
     2941 ctgcttatca ctgcgttgag tggtttcgct caggggcaat cgctgacgtt aattgctgcg
     3001 gaactggtgg taatggttgt tgttggtatt ttctttattc gccgccagct ttctcttccc
     3061 gtaccgctgc taccggtgga tttactgcgt atcccgctgt tttcactttc tatttgcaca
     3121 tctgtttgct ctttctgcgc acaaatgctg gcaatggttt ccctgccctt ttacctgcaa
     3181 accgtgctcg ggcgtagtga agtcgaaaca ggtttacttc tgacaccgtg gccgttagca
     3241 acgatggtga tggctccgtt ggcaggctat ttgattgaac gcgtacatgc aggattgctg
     3301 ggtgctctag ggttgttcat catggctgcg gggctttttt ccctggttct gctgcccgcg
     3361 tcacctgcgg atatcaatat tatctggccg atgatcttat gtggcgctgg atttggcttg
     3421 ttccagtcac ccaataacca caccattatt acctccgctc ctcgcgaacg tagcggtgga
     3481 gccagtggca tgttaggaac ggctcgtcta ctgggtcaga gtagcggcgc ggcactggtg
     3541 gcgctgatgc taaatcagtt cggtgataat ggtacgcacg tttcgctgat ggctgcggct
     3601 attctggcag tgattgctgc ctgtgtcagt ggtttacgta tcactcagcc acgatccagg
     3661 gcataaaaaa agcgc
//
LOCUS       DAJVUP010000250         3587 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.256, whole genome shotgun sequence.
ACCESSION   DAJVUP010000250 DAJVUP010000000
VERSION     DAJVUP010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3587
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.256"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(623..2332)
                     /locus_tag="OQQ75_004102"
     CDS             complement(623..2332)
                     /locus_tag="OQQ75_004102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858142.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
                     /protein_id="HCS1978232.1"
                     /translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
                     IQFKNKTAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
                     STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
                     LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
                     YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
                     YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGCSDIIQVYGKILNMCNLSQETILTL
                     LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
                     ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
                     LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
                     TNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
                     HFL"
     gene            complement(2764..3483)
                     /locus_tag="OQQ75_004103"
     CDS             complement(2764..3483)
                     /locus_tag="OQQ75_004103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector
                     phosphothreonine lyase"
                     /protein_id="HCS1978233.1"
                     /translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
                     QYPAYYFKVASNVPTYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
                     FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
                     QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
                     DGSERQEQMLREEPFYRLMIE"
BASE COUNT         1066 a          720 c          639 g         1162 t
ORIGIN      
        1 aagcttgata caactggtct ggtatataca gtttctttga gtgcggttac gtccacagag
       61 gtaacggtaa aagtaacccc ttgtcgggac cactccgacc gcgcacagag gcattttcat
      121 cgctgacagg ccgcattgcc tcgcagggct ggaggaggat cggtgatatc cggacgaccg
      181 taccggctta cgccgggctt cggcggtttt actcctctgc catgtgcaac aacggagtgc
      241 cgccttacat gccgctggcg cggcatatcc tggtaacatt tttgttgata ccaccttccg
      301 gccttatcct gaccagtggg ctttcctggc atcgatgata ccgatgaacg cgcatgatat
      361 tgagccgacg atattacggg caactggaaa tactcaccct ctggatgtga cctttatcca
      421 tgaagaagat ttggccatac catggaaacc tgaacaatca tcagtttacg cccatgtaaa
      481 cccctacggg atatttgaac tcgatatgga aacaaggttg ccaatcgagg tggttgcctg
      541 aaagttggca gttacccggt cactacacct tgttggagtg aacatatcaa aaacaggtag
      601 ttacacaatt taaattacag tctcataaaa aatgattaaa tctatttatt atttcaataa
      661 acgttttttt catcttcttt gaaaattgtt ctgctatagt atccggttcc agattgttct
      721 cttttattat tctacaatac tctaatattg tttctttgtc tctatttact acagatacaa
      781 atacaccagg aataccatct ttattagttg cggacagcat ttcgaccaat cgtcttgtgg
      841 taaaactata gttttttaga atattacaaa aggcacgtat tgtttcggta tggccattat
      901 aaaatgccat aaaaagtcct gatgtaccgt tgggattttt tatccataat aattcatcta
      961 tatattcctg gtgagggggg agtattttta gtatatctcc atacgccata atggcctttg
     1021 tgtgcccatt ttgaagtgcc ataaacaacc catgctttac tttcaataat tctttaattt
     1081 gttcactact aagcattttc ttattaagca gacttccgaa catacgaata ctatctgcat
     1141 gtccattctg caatgcaaaa aataacccag gtaaatcatg gctgtctttc gcagctaata
     1201 gatataatct cttatcggaa gttaacgggg ttttaaagac tatttcccca taggctttta
     1261 ttgtgtctac atgtccgttc ataaaagaca tgcataaacc cggcacattg tttgccccta
     1321 ccgcagcaag caatgtaagt attgtttctt gactaagatt gcacatattt aatatcttac
     1381 catatacttg aataatgtct gaacatccgt tttgaagtgc tatataaaat gcaggagtac
     1441 catcagagct tctcgtggcc agaaggttca ccagtttaga ttgagaaatt tcaccatttt
     1501 tgtatttttc catcagtata aataatactt ctgtcagatt ctttgttatc gcatgatata
     1561 taactctgga attgatcaat tcatctggta aaagtttcac tgtgtttgtt agaggggaat
     1621 tatgcctatc ttcaaatatt acctgcccgg gttgctccag accataaatt ttccaataaa
     1681 aatcatcaaa aaaatcctta gcggataatt gactcagttc gaaatggcta tcacaagtaa
     1741 atacagtacg tttatgagta acagttcgat taggatcgaa aaactgaaca acccattttt
     1801 cactttcttg tacgcgcttt attttcaacc ctaacgccat ttggtggttt aatgtgcatg
     1861 ctgataatgt tctgacaaag tctccatttt ttttcatgtt ataaaaaaaa ttagtaataa
     1921 ctgttcccca ctttttattt tccacaaaat aaatataagc tggtgatttt gaaaaatctt
     1981 ccgttttttc caaacataca ttttttgcaa tagcatcagg ggtgctaaga agctgatagt
     2041 ttaccttccc atttgtttcc ataaaattca tttcccaata ggaagctagg tgacggcaaa
     2101 ctatttgtct tccatatata tcttttgcca ctccatttat atttaccttc acatttctct
     2161 tttctgaaaa ataaggtgct gttttattct taaactgaat tagttcactg gagtttgaga
     2221 ccctcataat agaacttgtt attgttctat tatctctgtt aacagacata tctgttgata
     2281 acgaattttt tgttgaaaat atactagatg aaaatgtttt atttaacggc atagaagaca
     2341 accatagaga tgttataata ctattagatt gcagttacta atagtaaaag cctccttaca
     2401 aggaggtagc ttattcagaa tgctcctata agatagcgag ctcgtcaacg atacagatga
     2461 tctgattata ttgtgcaaaa ggagaacagg aaaataggca ctggaaaaga tgaaggcctg
     2521 atgggagcat taactaatgc aaaatccgac aggttaatat cccgaaaagc aatcaaacga
     2581 ctcaaacagg agatgcacgc tgaagtggtg gacaactgtt cggatttcag atgagtagct
     2641 cagcagttta tgagccgaat gctctgtcac ggtcaggaat caggctgcat acgctgtgcc
     2701 aaatctaatc gtagttattc taaccagttt tccagctaca aggtggtgta gctggcatct
     2761 tctctactct atcatcaaac gataaaatgg ttcctctcgt aacatttgct cttgcctttc
     2821 acttccatct cgatcgcttc gtagttcatt acgatagctg acatatttcc agtcttcagg
     2881 tctaacatct gacgccggat actccccggg agcgattttg cttcttaata gattagactc
     2941 gagacacatt ataaattgtc gtattttatg aagtaataaa gcactatatt gcgagcattc
     3001 ctgatctgat tttacatata gcgtaaactg agctcctatc cccacacgag attgctgaga
     3061 aactcgattc atatcagtta tcttccattt atctatagga ctgtcctctg aaaataataa
     3121 accagacaaa atttggaatg ccagaggaac ttgctcccta gctatactaa tatgaaactt
     3181 gtccccaaca aaatccccct tactctgagg attttcacga catgcatgaa taaacacatc
     3241 tccactatgg ttcacaatct ggaatccttg gtacatgaca gaaaaaaatt gacatatatc
     3301 agagtaagtt ggcacgttcg atgctacttt gaaatagtac gctgggtatt gccgtatttg
     3361 gttgtacaat atattgaagt tatttttcaa tctttcattc gcagaaagca tctgcggtat
     3421 ttcagacctc acaacattca aagaatctaa atttagtttt agacagggct tttttatggg
     3481 catagaaaac gtcctctata aaatagatat attatcttat attgattgtt tatcatcttt
     3541 tataaaacga tacattatat gtaatgtatg taagcgtaag ggtcttc
//
LOCUS       DAJVUP010000251         3586 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.257, whole genome shotgun sequence.
ACCESSION   DAJVUP010000251 DAJVUP010000000
VERSION     DAJVUP010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3586
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.257"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..363
                     /locus_tag="OQQ75_004104"
     CDS             <1..363
                     /locus_tag="OQQ75_004104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978234.1"
                     /translation="AEWPGEGGEGHLSSFFVQTDKASINVAYHHTVNQQKELGTFGAF
                     DHDWHTLAFKFKGSNSINVTPVLDGVDGQAFDLVKWANTANGLNRFVITDITGSAETY
                     PVLIDTVEVKANKAGAAA"
     gene            503..685
                     /locus_tag="OQQ75_004105"
     CDS             503..685
                     /locus_tag="OQQ75_004105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001304601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HCS1978235.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWCRQIDKRAAEKI
                     SASQSAGSKPEEPVTP"
     gene            609..956
                     /locus_tag="OQQ75_004106"
     CDS             609..956
                     /locus_tag="OQQ75_004106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HCS1978236.1"
                     /translation="MIKGPLRKSAPVSQPEANPKNPLLLNNPFQRENPMSEITSLVTA
                     EAVKEVLRSEEVRSALKQKLRQNLESRLDAEVDAILDELLGVAAVPEPEGIAGDGSAS
                     DGGEPTPDSDMMM"
     gene            1033..1248
                     /locus_tag="OQQ75_004107"
     CDS             1033..1248
                     /locus_tag="OQQ75_004107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS1978237.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRFSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            1253..1597
                     /locus_tag="OQQ75_004108"
     CDS             1253..1597
                     /locus_tag="OQQ75_004108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS1978238.1"
                     /translation="MKKKYELVVKGINNYPNKITVTVALEIGGYPSLLLPDVAISLDR
                     TEDATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLPEKRPVILEAQDVLITYRGKLPG
                     IITGSLKTPPLA"
     gene            1648..2181
                     /locus_tag="OQQ75_004109"
     CDS             1648..2181
                     /locus_tag="OQQ75_004109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1978239.1"
                     /translation="MNTKIKYGLSAAVLALIAAGAPAPEILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDSKPVVPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYRRINAGDRRGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VSRRDQESALACWDIDR"
     gene            2337..2519
                     /locus_tag="OQQ75_004110"
     CDS             2337..2519
                     /locus_tag="OQQ75_004110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310767.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978240.1"
                     /translation="MAKYKRILLRLTMKNGLELKAPVTDDISRALAFAIKWVAVGVAV
                     SPMLYGLAKLVIALKS"
     gene            2846..2998
                     /locus_tag="OQQ75_004111"
     CDS             2846..2998
                     /locus_tag="OQQ75_004111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001228697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rz1 family lipoprotein"
                     /protein_id="HCS1978241.1"
                     /translation="MLPLVVSACGSTPPAPVPCVKPPAPPEWIMQPAPDWQTPLNGII
                     SPSESG"
     gene            3084..3308
                     /locus_tag="OQQ75_004112"
     CDS             3084..3308
                     /locus_tag="OQQ75_004112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978242.1"
                     /translation="MKKLLVTVKPFQGTIPFRILQRGRVLVEGSFSGKCTQLHSRTFQ
                     VNATNEELTVECTMNAAKCRMVSAALQPVC"
BASE COUNT          921 a          788 c         1017 g          860 t
ORIGIN      
        1 gcggaatggc cgggtgaggg tggtgaaggc catctgagtt ctttctttgt ccagacagat
       61 aaagccagta ttaatgttgc ataccatcat acagttaatc aacaaaaaga acttggcacg
      121 tttggcgcat tcgaccatga ctggcatacg cttgcattta aatttaaggg cagtaacagc
      181 attaatgtta ctccggtgct tgatggtgtg gatggacagg cgtttgacct ggtgaaatgg
      241 gccaatactg ctaatggact caacaggttt gtcattacgg atattacagg tagtgcagaa
      301 acctaccctg tacttattga tacggtggaa gttaaagcaa acaaagctgg agcagccgca
      361 taattgctaa aaaaagccgc cagcggcagg aatggaagct ggcggaggta atcccaatgg
      421 agaatgtaaa gaaaagatgc tttcgtacat tggtttttta aatgaaaaca attctcattg
      481 tcaaccataa cggtaagaaa ttatgacatt tattcatcag gtgatgctgt acttctgtac
      541 ggcggtctgt gtgctgtatc ttctttcggg tgggtacagg gctgtgcgcg atttctggtg
      601 caggcagatt gataaaaggg ccgctgagaa aatcagcgcc agtcagtcag ccggaagcaa
      661 acccgaagaa cccgttactc cttaacaacc cctttcagcg agaaaatccc atgtcagaaa
      721 tcacatccct ggtcactgca gaggcagtga aggaagtcct gcgctctgaa gaagtccgga
      781 gcgcactgaa acagaaactt cgccagaatc ttgagtcgcg tcttgatgca gaagtggatg
      841 ccattctgga tgagctgctg ggcgtagcag cggttcctga gccggaaggt atcgcgggtg
      901 acgggagtgc ttcagatggc ggtgaaccta cacctgacag cgacatgatg atgtaagcat
      961 gcgcaaggga ccatcggtgt gtgccggtgg tctttatatt gttgtgagct tccggattgc
     1021 gggagacggg gtatgtacca gatggaaaaa atcacaacag gtgtgtcata caccacgtca
     1081 gcggtgggaa cgggctactg gttcctgcag ttgctggaca ggttttcccc gtctcagtgg
     1141 gcggcaatag gcgtgctggg gagtctgttg tttgggctgc tgacatatct gactaacctg
     1201 tatttcaaaa tcagagagga ccgtcgtaag gcggcgcggg gagagtaaag cgatgaagaa
     1261 aaaatacgaa ctggttgtta aagggataaa taattacccg aataagatta ctgttactgt
     1321 ggcactggaa attggtgggt atccgtcact gttgttgcca gatgtggcga ttagtcttga
     1381 ccgtactgaa gatgccacgc tggagtttta cgaagctgag gcgaaaaagc aggcgaagca
     1441 gtttttcatg gatgttgctg ccgggttatg tgaaggggat ggtccgttgc cggaaaagcg
     1501 ccccgtaatt ttagaggcgc aggatgtgtt gataacctac agaggaaaac taccgggaat
     1561 aattactggt tctctgaaga ctccaccgct ggcctgaaga cttaacatat ccagggattt
     1621 gaaatcgata aaccctgata aatatccatg aacaccaaaa tcaaatacgg cctgtcggct
     1681 gccgttctgg cgctgattgc cgcaggtgcg cctgcgcctg aaatcctcga ccagtttctg
     1741 gatgaaaagg aaggtaacca caccacggca taccgtgatg gcgcgggtat ctggaccatc
     1801 tgccgcggtg ccatcctggt ggatagtaaa cctgtcgtcc cgggcatgaa gttgtcgaag
     1861 gaaaaatgcg accaggtcaa cgccattgag cgtgataagg cgctggcatg ggtggagcgc
     1921 aatattaaag tgccgctgac cgaaccccag aaagcgggta tcgcgtcatt ttgtccctat
     1981 aacattggcc ccggtaagtg tttcccgtcg acgttttaca gacggattaa tgctggtgac
     2041 cgcaggggag catgcgaagc gattcgctgg tggattaagg acggtggcag agactgccgt
     2101 atccgctcaa ataattgcta cggtcaggta tcccggcgag accaggaaag tgcgctggcg
     2161 tgctgggaca tcgacagata agcagaatat tttgctgaaa ataaggcatg agcacgcgga
     2221 cggataacac gaaatcctgc gaactggcga aacgtaagtg aataaaagta aaaaccccgt
     2281 ttgttggcac caggcggggt tttgtgtttc tgaccttgag taaggcaagg gagaacatgg
     2341 cgaagtataa acgaattctg ttgaggttga ccatgaaaaa cggccttgaa ctgaaagcgc
     2401 ctgtaactga tgacatcagc agagcactgg cttttgccat taagtgggtg gcggtcggtg
     2461 ttgctgtgtc cccgatgctg tatgggctgg caaaactggt cattgcgttg aaatcgtgaa
     2521 gggaggatta agcatgtcag acaaactcat aacgctggcg aagatcctct gtgtaattgt
     2581 cggcatttca ttttcactaa tgctggttgc tctttttctt tccatggcct ggatgatgtt
     2641 gtcttcgtcg gggctgctgg ggtgaacata aaccgaatgc tttccgcgtt taccgttatt
     2701 ctgctggtgg tctgtggtgc gctgtggctg gcaacagacc attaccgtga taacgccatc
     2761 acctacaaag cgcagcgcga taaaaaagcc agagagctgg agctggcaaa cgcaaccatt
     2821 actgacatgc agcagcgcca gcgtgatgtt gccgctggtc gtaagcgcct gcggatcaac
     2881 gccacctgct ccggtaccgt gcgtgaagcc accggcacct ccggaatgga taatgcaacc
     2941 ggcccccgac tggcagacac cgctgaacgg gattatttca ccctcagaga gcggttgatg
     3001 acaatgcaga agcaactgga aggggcgcag gaatatatcc gcactcagtg tattaactag
     3061 tatttttgtt atccggagaa tgcatgaaga aattactggt aaccgtaaag ccttttcagg
     3121 gaacaattcc gttccgtatt ttgcagcgtg gtcgtgttct tgttgaaggt tcgttcagtg
     3181 gtaaatgtac gcaattacac tcccggacct ttcaggtgaa tgccacgaat gaagagctaa
     3241 ccgttgagtg tacgatgaat gccgctaaat gccgcatggt atccgctgca ttacagccag
     3301 tgtgttgagc gaccttatta accatgcgcg gtattgtcgc cgtatccccg cattaacaga
     3361 gaccgcagcc cgaccgggag actcctctgc gcgagtgtgc ggggataatc aaaaacgata
     3421 cacaccgggg tttaccgcgt taacggagcg cggcgttgtc ccctcatggt cgctggtccg
     3481 gtgcgatggt ggaagaaacc ggacgatgtg ttacctcgca agctctgtta tgtcatgtgt
     3541 ctgatttgtg atttaagtcg gataattgtc gttgccatta agcaga
//
LOCUS       DAJVUP010000252         3562 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.258, whole genome shotgun sequence.
ACCESSION   DAJVUP010000252 DAJVUP010000000
VERSION     DAJVUP010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3562
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.258"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            23..922
                     /gene="pgrR"
                     /locus_tag="OQQ75_004113"
     CDS             23..922
                     /gene="pgrR"
                     /locus_tag="OQQ75_004113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator PgrR"
                     /protein_id="HCS1978243.1"
                     /translation="MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEE
                     RLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSALASLSELQNRPSGTIRITTVE
                     HAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRI
                     GPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVR
                     MEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYY
                     PHRRHAGSAFSLFIDRLKYKGAV"
     gene            1259..2872
                     /gene="mppA"
                     /locus_tag="OQQ75_004114"
     CDS             1259..2872
                     /gene="mppA"
                     /locus_tag="OQQ75_004114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415845.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide ABC transporter
                     substrate-binding protein MppA"
                     /protein_id="HCS1978244.1"
                     /translation="MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDE
                     PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNA
                     KWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTA
                     VDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERV
                     VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL
                     LKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPA
                     WHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQ
                     KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLL
                     TSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNG
                     RLIKPWLKGYPINNPEDVAYSRIMYIVKH"
     gene            complement(2923..>3562)
                     /gene="ynaI"
                     /locus_tag="OQQ75_004115"
     CDS             complement(2923..>3562)
                     /gene="ynaI"
                     /locus_tag="OQQ75_004115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="low conductance mechanosensitive channel YnaI"
                     /protein_id="HCS1978245.1"
                     /translation="LLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYF
                     DRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVENPGRMT
                     NRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLVYFNQFADSSLNIMVY
                     CFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMDNITPPEQGR"
BASE COUNT          972 a          792 c          864 g          934 t
ORIGIN      
        1 atagattgca tggagatact gaatgaagcg tgaagaaatc gctgatctga tggcgtttgt
       61 cgtcgttgca gaggagcgta gcttcactcg tgcagcagcc cgcctgagca tggcgcagtc
      121 agctttaagc cagatagtgc gtcgtataga agaacgattg ggattgcggc ttctgacgcg
      181 aaccacgcgc agcgttgttc caactgaagc gggcgagcat cttttgtctg ttcttggccc
      241 tatgttgcat gacatagatt cagccctggc atccctgagc gagctgcaga accgcccatc
      301 cgggacaata cgtattacta ctgtagaaca tgcagcaaaa acgatattgt taccagcaat
      361 gcgcacattc ctgaaatcgc atcctgaaat tgatattcag ctcaccattg attatggttt
      421 gaccgatgtc gtttctgaac gttttgatgc aggcgtccgt ctgggtgggg agatggataa
      481 agatatgatc gccattcgaa tcgggccaga tataccaatg gctattgttg gctcaccgga
      541 ttatttttct cgccgaagtg ttccaacgtc agtgtcacaa ttaatagatc atcaggcaat
      601 taatttgtat cttcccacat cgggtacagc aaatcgctgg agattaatac gcggtggacg
      661 tgaagttcgt gttcgcatgg aaggtcagct tttactgaat acgatagacc tgatcattga
      721 tgctgcaatt gatgggcatg gattggcgta tctaccttat gatcaggttg agcgggctat
      781 taaagaaaaa aaactgatac gtgttttgga taaattcaca ccagatttac ccggttatca
      841 cctgtactat ccacaccgtc gacatgctgg ctcggcattc tcattattta tagataggct
      901 gaagtataaa ggtgctgttt agcactactt gctgatacat taatttaatt tctctcttaa
      961 cgtattctca gttcctttca acgttttggt tattttttat tcttcgtaca atggcgacag
     1021 atgctgattt tgataccgaa aactggtttg aacgtgcgaa gcctgaacgt agtattcggt
     1081 gttctatgtg ctttgccgca ttttggcgtc gattatttac actaaatctg atttaatata
     1141 ttgatacata aaacatttta tgcttcctgt gtcacttttt tgatggaagt tgtttgcatt
     1201 tctttaaggc gaaacaaata attacgcatc aattttaatg tcggttagag ggaaacttat
     1261 gaagcactct gtttcagtca cgtgttgtgc gctgttggtc agcagcattt ctctttcgta
     1321 tgctgcagaa gttccgagcg gcacagtact ggcagagaag caggagctgg tgcgccacat
     1381 taaagatgag cctgcgtcgc tggatcccgc taaagccgtg ggcctgccag agattcaggt
     1441 cattcgcgat ctgtttgaag gactggtgaa tcagaacgag aaaggggaga ttgtccccgg
     1501 cgttgcgact cagtggaaaa gtaatgacaa ccgtatctgg acttttaccc tgcgcgataa
     1561 cgcaaaatgg gcggatggca caccggtaac ggcgcaagat tttgtctaca gctggcagcg
     1621 tctggtggac ccgaaaacgc tatcgccatt tgcatggttt gccgcgctgg cgggaatcaa
     1681 caacgcacag gcgattattg atggtaaagc tacgcctgac cagcttggcg tcaccgcagt
     1741 tgatgcccat accttgaaaa ttcagcttga taaaccgttg ccgtggtttg tgaatttaac
     1801 cgctaacttt gccttcttcc cggtgcaaaa agccaacgta gaaagcggta aagagtggac
     1861 gaaacccgga aatctgatcg gcaatggcgc ttatgttctt aaagaacgcg tagtcaatga
     1921 aaaactggtc gtggtaccga atacccatta ttgggataac gccaaaacgg tactgcaaaa
     1981 agtgaccttc ctgccaatta atcaggaatc cgcagccact aagcgttacc tcgcggggga
     2041 tattgatatc accgaatcct tcccgaaaaa tatgtatcag aagctgttga aggatattcc
     2101 ggggcaggtt tatacgccgc cgcagctcgg gacctattat tatgcgttta acacgcaaaa
     2161 agggccgacg gcagatcagc gcgttcgcct ggcattaagt atgacgatag atcgccgcct
     2221 gatgaccgaa aaagtgttgg gaacgggcga aaagccagcg tggcatttta caccagatgt
     2281 taccgccgga tttacgccgg aaccttcgcc gtttgaacaa atgagtcagg aagaactgaa
     2341 tgcgcaggca aaaactttgt tgagcgcagc tggttatggt ccgcaaaaac cgctgaagct
     2401 gacgcttttg tataacactt cagaaaacca tcaaaaaatt gcgattgctg tagcatcgat
     2461 gtggaaaaag aaccttggcg tagatgttaa attgcaaaat caggaatgga aaacctatat
     2521 cgatagccgt aacaccggca attttgatgt tatccgcgcc tcatgggtgg gggattataa
     2581 tgaaccctcc actttcctga cattattaac gtcaacgcat tcaggaaata tttcacgctt
     2641 taacaatccg gcatacgaca aagttctggc ccaggcatcg acggaaaata ccgttaaagc
     2701 gcgtaatgcc gattacaacg cggcagaaaa aatcctcatg gagcaagcac cgattgcacc
     2761 aatttatcaa tataccaatg gacgattaat caagccgtgg ctgaaaggtt atcccattaa
     2821 taacccggaa gatgtggcgt acagccggat tatgtatatt gtgaagcatt gatgtgatgg
     2881 gaactggcgt tacccttgtg gataacgcca gtgatgtctg atttagcgcc cctgttccgg
     2941 cggtgtaatg ttatccatat acagcgtctg gctggggaag gcaaagtccg cgccgtgtga
     3001 ctgcacaata tcgataatct tcaaataaac gtcttgttgt gcagcaagcc attcagccca
     3061 taccgtggtt ttggtaaagc aataaaccat aatattcaat gacgagtcgg caaactggtt
     3121 gaaataaacc agtaaggttt gtcgctggtc gatggccggg tgatttttca gcatctcacg
     3181 tacggcttcg acaataacgc ccacttttgc cgcatcctca taacgtaaac caatggtcgt
     3241 ggtaatgcgg cggttggtca ttcgtcctgg gttttctacg ctgatcgacg aaaacagcga
     3301 gttcggtacg tacaatggac gattatcaaa ggtcgtaatt ttggtaattc gccagccaat
     3361 ttccgctact gtaccttcga tatttctgtc cggtgaacgg atccagtcgc caatactgaa
     3421 aggacggtcg aaatagagca tgatcccgga aaagaaatta ctcagaatat ctttaccggc
     3481 cataccgaca gccagaccac caataccacc aaaggtcagc aagccagaaa ggctcatgcc
     3541 gaaatgttcg ccataaagca ga
//
LOCUS       DAJVUP010000253         3541 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.259, whole genome shotgun sequence.
ACCESSION   DAJVUP010000253 DAJVUP010000000
VERSION     DAJVUP010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.259"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            233..544
                     /locus_tag="OQQ75_004116"
     CDS             233..544
                     /locus_tag="OQQ75_004116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1978246.1"
                     /translation="MFNVITHPAALDELLELPDNLRGRMTRLIERLEQEGNKMKMPHS
                     RVIGGGLFELRVGDKNIARTLYAYATGNEIYLLHAFVKKTQKTPTKAIEIARMRLKEM
                     N"
     gene            544..831
                     /locus_tag="OQQ75_004117"
     CDS             544..831
                     /locus_tag="OQQ75_004117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1978247.1"
                     /translation="MKVKGVPFSQVKQKLLSTPEAVKGYEDADKELEMVEMLYEMREK
                     AGLTKSALAERMGLRPSAISRLESNPLGASMKTLTKYAHACGATIDIHAVY"
     gene            complement(1368..2555)
                     /locus_tag="OQQ75_004118"
     CDS             complement(1368..2555)
                     /locus_tag="OQQ75_004118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HCS1978248.1"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT
                     LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPDCPWQHIVF
                     TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPRIFTVIHTWGRDQQWHPHI
                     HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKR
                     EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPVSRLEHYAGQDEIGLR
                     YNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITE
                     TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR
                     WCG"
     gene            complement(2555..2920)
                     /locus_tag="OQQ75_004119"
     CDS             complement(2555..2920)
                     /locus_tag="OQQ75_004119"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978249.1"
                     /translation="MARSAKPRKRKPASQRSELPRYVVKLHEDDFFDEEDAEVLRFDS
                     FDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIARCTEREFATILSGISAGG
                     MYCPECGTVHWPDGVAPPF"
     gene            3005..3334
                     /locus_tag="OQQ75_004120"
                     /pseudo
     CDS             3005..3334
                     /locus_tag="OQQ75_004120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146522.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
     gene            3364..3447
                     /locus_tag="OQQ75_004121"
                     /pseudo
     CDS             3364..3447
                     /locus_tag="OQQ75_004121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
     gene            3447..>3541
                     /locus_tag="OQQ75_004122"
     CDS             3447..>3541
                     /locus_tag="OQQ75_004122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1978250.1"
                     /translation="MEQKWTSKALSDLARLYDFLVLASKPAAARMV"
BASE COUNT          926 a          920 c          835 g          860 t
ORIGIN      
        1 taaggtgaaa tctgtcaatc agtaccggct tacgccgggc ttcggcggtt ttactcctgt
       61 gccatatgca acaacggagt gccgccttcc atgccgctaa cgcggcatca aaaaatccct
      121 cttctccagt tgcccccctc cgaactcaga gtgtattttc atttattgat gaaatttact
      181 gtttgcgcaa ttttcctgtt ttagtgtatt ttgtcattct ggaggctata atatgtttaa
      241 tgtgattact cacccggccg cactggatga acttctagaa ttaccagaca atctgcgtgg
      301 tcgtatgacc agactgattg aacggctgga acaggaaggt aacaaaatga aaatgcctca
      361 cagccgtgta attggcggag ggctttttga actgagagtc ggggataaaa atatcgcaag
      421 gacactgtac gcttatgcaa cgggtaacga aatctatctg ctgcatgcat ttgtgaaaaa
      481 aacgcaaaag acaccaacga aagctattga aattgccagg atgcgtctga aggagatgaa
      541 ctgatgaaag taaaaggtgt tccattcagc caggtaaagc aaaaactact cagtactcca
      601 gaagctgtca aagggtatga ggatgctgac aaagaactgg agatggtgga aatgttatac
      661 gaaatgagag aaaaagcggg attaacaaag tcagcactgg ccgaacgaat ggggttacgc
      721 ccgtcagcca tcagtcgcct ggaaagtaac cctttagggg ccagcatgaa aactttgaca
      781 aaatatgctc atgcctgtgg cgcaaccatc gatattcacg ctgtctattg aggggtccgc
      841 ttggaattcg gaaaataaac cacgttaaga ctatttttta gataaatgac tttcaggaat
      901 cgccaagatg gcgggataac agcggttttg gtgtcctaaa tcgtacaatt ctgtacatcc
      961 acgcaaggga atgtacggaa gtaagccaga cggttatcgg acggtcagaa catttcgtac
     1021 agcctttacg ttcagtgagt tagctggcct ggacgtaacc actcgttagc tcaattctct
     1081 tagcgtggga aaatttccga attccaagcg gaccccttta tccttgcccc gctgaatgag
     1141 gaaacgctgt tccgggggat tatgctgaac gtcttccgtt catcgatagg aattaaaacc
     1201 ccaaaaagat taaaaaacac cacaaaacgg atgtttcttc aacaccactt ttgctcatat
     1261 gaacggaacc gacgattaaa ctggatggct ctgattgatt cagggtatga atggcggttt
     1321 tttgctccgt ttccctcaaa atggacgcta cttaccctct gcggctctca gccgcaccac
     1381 cgcatccggg ccagcggctc atgcatcagg acctgctctg ccagacggta gccccgcttc
     1441 agccccgtaa aacgcatctg actcccgcac agcacgcact tcagcgggtc aaccttcagt
     1501 aacctctgat acatccctct ccaggtgatt tgcatcgccg tttttctcac tgtctccgtt
     1561 atgatgtaca ccacttcttc cagtaaccgc cgtttcgccg gactcagaaa accgtagtac
     1621 ctcaccatac ggaacccctt atccgccaca tgccaggaga acctttccat gaactcatct
     1681 ccactcatca acaggtattc ttcccgtttt gttcggtgac tgttgtaacg cagtccgatt
     1741 tcatcctgac cggcataatg ctccagacga ctcaccggca ccggtggctt tttcaggtaa
     1801 gagccaaagt acaccgccac atgggtggca ttatccatca cccgggatac gttgacattc
     1861 cagccacggc ggtaatgcgt gtccaggaag cgattccatt cccgtttact gcttccttct
     1921 gctgccagcg catccggcat caccaggtca gggtatttcc gtgacagtaa ccgtgttatc
     1981 cggtagcgcc acatgctcat caccttacgg gcgtaaaaat gaagattttt ccaggtgtgg
     2041 cccgacgtca caccaccggc agttgtcgat aaatggatat gcggatgcca ctgctggtca
     2101 cgcccccatg tgtggatcac cgtgaatatc ctcggctcca catctgcctg atggcagatt
     2161 tccagtatca catccgctgc aatgcggctc atctctgcca gcaaccaccg gttgtggaac
     2221 accagggacc agtactggca gggtaacgtg aacacaatat gctgccatgg gcagtcgggg
     2281 accaggctca gcagatactg tatccactgt gcgccagcct tcaccccgca gtgcgggcag
     2341 gagcggcttt tacaccggaa gcagaccttt tttgtatggc aacagtccgg tgatgaacag
     2401 caccactgtg tataccccat cagtgtggtc ccgcacgcca tgattttggt caccgactca
     2461 atcaccaccg gacgtactgc cccttccggc tgcttctcca gccagttaag ccagcggttt
     2521 ccctgctgaa agatatcggc aaaacgggga agcatcagaa gggcggggcg actccgtccg
     2581 gccagtgaac cgtgccacac tccgggcagt acataccgcc ggcgctgata ccggaaagaa
     2641 tggtcgcaaa ttcccgctcc gtgcagcggg caatttccgg atacccttcg tcatcaacac
     2701 gtacaaacca gaagaccagt tttttgtttc cggcatccac aaagaacgga atattcaggt
     2761 ctgcgcaaca ctcaacggca tcatcaaaac tatcaaagcg cagaacttct gcgtcttctt
     2821 cgtcaaaaaa atcatcttcg tgaagcttca cgacatagcg gggaagttcg cttctttgag
     2881 aggcgggttt acgtttacgg ggtttagctg aacgggccat ataaccacct gaaagacaat
     2941 gacattgcct gtttttataa cggtaattgc agaccatgac aagccgcagc cgtcaggctg
     3001 cctactcgag cttcagctca ataaaggcga atatcgacat aaattacccc gatggatctt
     3061 ttttgcaaat cagggtgaat tcacgaccgg tgattacgaa gaaatcatga ataaggccag
     3121 cgccctgagt ctggtatcga atgcaatcct gtactggaat acatcaagaa taagcaatat
     3181 tgttgaaggg ttacgtgaaa atggtgaggt tattgatgat gacgtattag cccatatatc
     3241 attactgccc tataaacacg tattacctaa tggtacttat tttgttgatg gagaacctta
     3301 cggtactgag cctaccgaaa gagcaaaacc gtaagtttct gttcaaatgc tcccgctggt
     3361 ccatccggac agattatcga ccatcaggct gtacaggcct gggcggacag cctcagtact
     3421 gacaatccgt taccggtgcc acgctgatgg aacagaagtg gaccagtaag gcgctttctg
     3481 atttggcgcg gttatatgat tttctggtgc tggccagtaa acctgctgcc gccagaatgg
     3541 t
//
LOCUS       DAJVUP010000254         3511 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.260, whole genome shotgun sequence.
ACCESSION   DAJVUP010000254 DAJVUP010000000
VERSION     DAJVUP010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.260"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(313..732)
                     /locus_tag="OQQ75_004123"
     CDS             complement(313..732)
                     /locus_tag="OQQ75_004123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309968.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1978251.1"
                     /translation="MVHEDKARKEFASRLALACENAGYEQHGRQAEIARRMKLTPKAV
                     SKWFNGETIPRREKLRELATLIGTTPTYLLGEDTEESGQVRFYQELNPRQKIIIDLLD
                     ELPDSETDELLKTLEEKKQKYNAIYEELARKKKQKAS"
     gene            812..1066
                     /locus_tag="OQQ75_004124"
     CDS             812..1066
                     /locus_tag="OQQ75_004124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1978252.1"
                     /translation="MNQKTLEDVIKTVRVAVVADVCGVSQRAIYKWMDNGKLPRTEYT
                     GETNYAEKIALASNGLFSADAILTIGRNKTTTKKLMGVDS"
     gene            1063..1488
                     /locus_tag="OQQ75_004125"
     CDS             1063..1488
                     /locus_tag="OQQ75_004125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS1978253.1"
                     /translation="MKIKHEHIRMAMNAWAHPDGEKVPAAKITKAYFELGMTFPELYD
                     DSHPEALARNTQKIFRWVEKDTPDALKKIQALLPAIEKAMPPLLVARMRSHSSAYFRE
                     LVETRERLVRDADDFVAVAIAGFNQMNRGGPAGNIVAVH"
     gene            1560..2630
                     /locus_tag="OQQ75_004126"
     CDS             1560..2630
                     /locus_tag="OQQ75_004126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer"
                     /protein_id="HCS1978254.1"
                     /translation="MANAWLRLWHDMPNDPKWRTIARVSGQPIATVMAVYIHLLVSAS
                     RNVTRGHIDVTTEDLASALDVTEEVIDSILQTMQGRVLDGDLITGWEKRQVLKEDNGN
                     ISQTAKSPAERKRAQRERERKREQNGDCHGASRYVTHMSRRVTTDKDTDKDTDQEDQN
                     TMVHGVKNATNQAGDVQTVNPGQPAGTTPEADSAYALKADSGAVQQAMTASPEQSHQL
                     QQPEADSAIQREADRVVPENTGQSVGRVDYPDVFEQVWREYPLRAGANPKKSAFSAWK
                     ARLREGVPPEAMLDGVRRYARYLAATGKTGTEFVQRATTFFGPDRNFENPWLLPVSGT
                     NNQRCVNHISEPDNEIPPGFRG"
     gene            2671..3093
                     /locus_tag="OQQ75_004127"
     CDS             2671..3093
                     /locus_tag="OQQ75_004127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HCS1978255.1"
                     /translation="MAKVFTQEEREKIKGQVLELVRQSGRETLRQLEAKTGATRYLMS
                     VLARELVASGDVYNSGYGLFPSEQARKDWQNARKKLSRAKLKKPSAVDPDLIWSLPDG
                     EIRRYDSRLNIICRECRKSEVMQRILSFYQGNFQEVMA"
     gene            3090..3395
                     /locus_tag="OQQ75_004128"
     CDS             3090..3395
                     /locus_tag="OQQ75_004128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001266129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4406 domain-containing protein"
                     /protein_id="HCS1978256.1"
                     /translation="MRVRVYIAGPMTGYKNFNREAFHNAEEELKREGHTVLNPAVLPD
                     GLTQPQYMDICMAMIRCVDAIYMLKGWQRSAGAKAELALAEKLGHAVIFQETASVQD"
BASE COUNT          940 a          769 c          952 g          850 t
ORIGIN      
        1 atcgatagta tccatgctga cctcatttcc ccttaacgcc ggggtagcgg aacaaaaacc
       61 tgctgcatag ttattaaagt tgaaccctgc cgtcatgttc ttacgcctcg ggctggctac
      121 ttaacccctg accactgcct ggtaactcga agtattgccc tgcattctgt ggggcggggt
      181 gggtggcagg tatataatgt actttgcgtt cattgttgta aagtgcttat ggtacatttt
      241 gtgtgtaaaa aaatgagatg ggataaagtg aagcacaaac ccggaggaag gcgctaccgg
      301 atttatgctg gtttaagagg ctttttgttt tttctttcgt gctaactctt cgtaaattgc
      361 attgtacttc tgttttttct cttcaagagt ttttaaaagt tcatctgtct cactgtcagg
      421 gagctcgtcc agaaggtcaa tgatgatttt ttgtcttgga tttaactcct gatagaaacg
      481 tacctgtcca ctttcttctg tatcctctcc caaaagatag gttggtgttg ttcctattag
      541 tgttgctaat tcccttaatt tctcccggcg aggaattgtt tcgccattaa accatttgct
      601 aaccgctttt ggtgttaatt tcattcgacg ggcaatttct gcctgccttc catgttgttc
      661 ataaccagcg ttttcacagg ctagcgcaag cctactggcg aactctttac gcgctttatc
      721 ttcatgaacc ataagttcaa tgatattcgc tcttgaatgt actgtcagtt ctgttatggc
      781 atgtactcaa agttcacatt gtgagggtga tatgaaccag aaaacacttg aagatgtaat
      841 caaaactgtt cgcgttgctg ttgtggccga cgtttgtggt gtcagccaaa gagcaatcta
      901 taaatggatg gataacggaa aattgcctcg cacagaatat accggcgaaa caaattacgc
      961 tgaaaaaatc gctcttgcat caaacggatt attttctgcc gatgcaattt taactattgg
     1021 caggaataaa actactacga aaaagctgat gggagttgat tcatgaaaat caagcatgaa
     1081 cacatccgca tggcgatgaa tgcctgggcg catccggacg gcgaaaaagt accggctgcg
     1141 aaaattacca aagcgtattt cgagctggga atgacgttcc cggaactgta tgacgacagc
     1201 catccggaag ccctggctcg caatactcag aaaattttcc gctgggtgga gaaagacacc
     1261 cctgatgcgc ttaaaaaaat tcaggcgttg ttaccagcta tcgaaaaagc aatgccacct
     1321 ctgctggtgg cccgaatgcg cagccatagc tcagcctatt ttcgggaact agtggagacg
     1381 cgggaacgac tggtgagaga cgctgatgat tttgtcgcag tggcgatcgc tggtttcaac
     1441 cagatgaatc gtggtggccc tgcaggaaat attgtggctg tgcattgact cgcaatattc
     1501 ataccggatc acttccggca atttgtgagt aaaaagattc ggtatcaaaa gaggtgagta
     1561 tggctaacgc ctggctcaga ttatggcatg acatgccaaa tgaccctaag tggcgaacaa
     1621 ttgccagggt gtcagggcag ccaattgcaa cagtgatggc agtgtatatc cacctcctgg
     1681 tgagcgcgtc acgaaatgtc acgcgaggtc acattgatgt cacgacagaa gatttggcaa
     1741 gtgcgctcga cgtgacagaa gaggtaattg attcaatttt gcagacgatg caggggcggg
     1801 tacttgatgg tgatttaatc actggatggg aaaaacgcca ggtgctgaaa gaggacaacg
     1861 gcaatatttc gcaaaccgca aaatctcctg cagagcgcaa gagggcgcag cgagagaggg
     1921 aaagaaagcg ggaacaaaat ggcgattgtc acggcgcgtc acgatatgtc acgcacatgt
     1981 cacgacgagt cacgacagat aaagatacag ataaagatac agatcaagaa gatcaaaaca
     2041 ctatggtcca tggcgtaaaa aacgccacga accaggcagg ggatgttcag accgtcaatc
     2101 ctggtcagcc agcaggcacg acaccggaag ccgattcagc gtatgcgctg aaagccgatt
     2161 cgggcgctgt gcagcaggcg atgaccgcaa gtccggagca atcacaccaa ctgcagcagc
     2221 ctgaagccga ttccgccatt cagcgggaag ccgatcgggt agtcccggaa aacaccgggc
     2281 agtctgtggg acgagtggat tatccggatg tgttcgaaca ggtctggcgg gagtacccgt
     2341 tgcgtgccgg ggcaaacccg aagaaatccg ctttcagtgc ctggaaggcc agattacgcg
     2401 agggggtgcc accagaggcc atgctggatg gcgtgaggcg ttacgcaaga tacctggcgg
     2461 ctaccgggaa aacgggaacg gaatttgttc agcgagcgac gacgtttttt ggaccggacc
     2521 ggaattttga gaacccctgg ttgctcccgg taagcggcac gaacaaccag cgttgtgtga
     2581 atcatatttc tgaaccggat aacgaaattc cgccgggctt cagggggtaa gtgttaattt
     2641 ctggtcatga ggtaattttc aggagggctt gtggcaaaag tttttacaca agaagagcgg
     2701 gaaaaaatta aagggcaggt tcttgaactc gtacgccaga gtgggcgcga gacgttacga
     2761 caactggaag ctaaaactgg ggcaacaaga tatctgatga gcgttctggc cagagagctg
     2821 gttgccagtg gcgatgtata caactctggt tacgggttat tcccgtctga acaggcgcgt
     2881 aaggactggc aaaatgcccg taaaaagctc tcaagggcaa agctgaagaa accatctgcg
     2941 gttgatccgg accttatctg gtcattacct gacggagaaa tacgtcgcta cgacagtcgc
     3001 ctaaacataa tctgtcgcga gtgccggaag agcgaagtta tgcagcgcat attgtcgttt
     3061 tatcagggta attttcagga ggtgatggcg tgagggtgag agtctatatc gccggtccaa
     3121 tgaccgggta taaaaatttc aaccgtgagg cgtttcacaa tgcggaagag gaactgaaac
     3181 gggaagggca taccgtctta aacccggcag tacttccgga cgggctgaca cagccgcagt
     3241 acatggatat ctgcatggcg atgattcgtt gtgtggatgc gatttacatg ctgaaaggct
     3301 ggcagcggtc agcaggcgct aaggcagaac tggcgctggc ggagaaactg gggcatgcgg
     3361 tgatttttca ggagacagcc agtgtgcaag actaattacc aggcattacg tgaacgttat
     3421 tcaccaattc aggtgccgga atgtcctgtt tgtggcgatg aaatgtcgat acagcgcata
     3481 ttttccagaa cgcatattgt gtatgcctgc a
//
LOCUS       DAJVUP010000255         3495 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.261, whole genome shotgun sequence.
ACCESSION   DAJVUP010000255 DAJVUP010000000
VERSION     DAJVUP010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3495
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.261"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..239
                     /locus_tag="OQQ75_004129"
     CDS             <1..239
                     /locus_tag="OQQ75_004129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1978257.1"
                     /translation="AQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTD
                     KWQRRTHSLWRHREWHASAFTGICNDLAAASTFV"
     gene            176..778
                     /locus_tag="OQQ75_004130"
     CDS             176..778
                     /locus_tag="OQQ75_004130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000090847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1978258.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSD
                     GWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVA
                     IWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMV
                     AQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR"
     gene            839..>3495
                     /locus_tag="OQQ75_004131"
     CDS             839..>3495
                     /locus_tag="OQQ75_004131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1978259.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKS
                     VLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRLTFGVQALVENTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCR
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNVVEVNWIDPDNGHETATELVEDAQAILRYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLD
                     REITLPSSCTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL
                     RQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQ
                     LALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITAVPKLAVYDP
                     TVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKS
                     AFVEAVGRASDDAEGYLSFYKGLINNTHLGKELWTQIDNGQLAPDLTEIRTSITNVSN
                     EITQTVNKKLENQSAAIQQIQKVQVDTNN"
BASE COUNT          789 a          882 c         1119 g          705 t
ORIGIN      
        1 cagcacaacc gggcgatgtg ctgctgtgct gttttggttc atcggtgccg aatcatgccg
       61 ccatttactg cggcgacggt gagctgctgc accatattcc tgaacaactg agtaaacgag
      121 agaggtatac cgacaaatgg cagcgacgca cacactccct ctggcgtcac cgggaatggc
      181 acgcatctgc ctttacgggg atttgcaacg atttggccgc cgcatcgacc ttcgtgtgaa
      241 aacgggggct gaagccatcc gcgcactggc cacacagctc ccggcgtttc gtcagaaact
      301 gagtgacggc tggtatcagg tgcgcattgc cgggcgtgat gcaggtgaaa ccgaattgtc
      361 tgcccgtctt aatgagccgc tggcaaatgg tgcagtgatc cacatagtac cgcgtctggt
      421 gggagctaaa agtggcggtg tgtttcaggc ggtgctgggg gcagctgtta tggcggttgc
      481 tatatggatg ccgggggtag gaattatggc gagtaatctg ctgttttctc tcggtgccag
      541 tatgacgctt ggcggtgttg cacagatgct ggcaccgaaa gccagaactc cccgtacaca
      601 gacaacggat aacggcaaac agaacacctg tttctcctca ctggataaca tggttgccca
      661 gggcaatgtt ctgcctgttc tgtacggtga aatgcgcgtg gggtcgcggg tggtatctca
      721 ggagatcagc acggcagacg aaggggatgg tggtcaggtt gtggtgattg gtcgctgatg
      781 caaaatgttt catgtgaaac cgcctgcggg cggttttgtc gtttatggag cgtgaggaat
      841 gggtaaaggc agcagtaagg ggcatacccc gcgcgaagcg aaggacaacc tgaaatccac
      901 gcagttgctg agtgtgattg atgccatcag cgaagggccg gttgacggtc cggtggatgg
      961 attaaaaagc gtgctgctga acggtacgcc agtcctggac agcgagggga agacaaactt
     1021 ttccggtgtt acggtggtgt tccgcgccgg cgagcaggag cagacaccgc cggaggggtt
     1081 tgaatcttcc ggctcagaga ctgtgctggg tacggaagtg aaatacgaca cgccgatcac
     1141 ccggaccatc acgtcggcaa acattgatcg tctgcgcctg accttcggtg tgcaggcact
     1201 ggtggaaaac acctcaaagg gggaccggaa tccgtcggaa gtccgcctgc tggttcagat
     1261 acagcgtaac ggtggctggg tgacggaaaa agacatcacc attaagggca aaaccacttc
     1321 gcagtatctg gcctcggtgg tggtgggtaa cctgccgccg cgcccgttta atatccggat
     1381 gcgcaggatg acaccggaca gcaccacaga ccagctgcag aacaaaacgc tctggtcgtc
     1441 gtacaccgaa atcatcgatg tgaaacagtg ctacccgaac acggcgctgg tcggcgtgca
     1501 ggtggattca gagcagttcg gtaaccagca ggtgagtcgc aattatcatc ttcgcgggcg
     1561 cattctgcag gtgccgtcga actataaccc gcagacgcgg caatacagcg gtatctggga
     1621 cggaacgctt aagccagcat acagcaacaa catggcctgg tgtcggtggg acatgctcac
     1681 tcatccgcgc tacggcatgg ggaaacgtct tggtgcggca gatgtggaca aatgggcgct
     1741 gtatgtcatc ggccagtact gcgaccagtc agtgccggac ggatttggcg gcacggagcc
     1801 gcgcatcacc tgtaacgctt acctgaccac acagcgtaag gcgtgggatg ttctcagtga
     1861 tttctgctcg gcgatgcgct gtatgccggt atggaacggg cagacgctga cgttcgtgca
     1921 ggaccgaccg tcggataaag tgtggaccta taaccgcagt aatgtggtga tgccggatga
     1981 tggcgcgccg ttccgctaca gcttcagcgc cctgaaggac cgccataatg tcgttgaggt
     2041 gaactggatt gatccggaca acggtcatga gacggcgaca gagcttgtgg aggacgcgca
     2101 ggccattctc cgttacggtc gtaacgtcac gaagatggat gcctttggct gtaccagccg
     2161 gggacaggcg caccgcgccg ggctgtggct gattaaaacg gaactgctgg aaacgcagac
     2221 cgtggacttc agcgtcggcg cagaagggct tcgccatgta ccgggtgatg tcattgaaat
     2281 ctgcgatgat gattatgccg gtatcagcac cggtggtcgc gtactggcgg tgaacagcca
     2341 gacccggacg ctgacgctcg accgtgaaat cacgctgccg tcctcctgta ccacgctgat
     2401 aagcctggtt gacggaaatg gcaatccggt cagcgtggag gttcagtccg tcaccgacgg
     2461 cgtgaaggtg aaagtgagcc gggttcctga cggcgttgca gaatacagcg tgtgggggct
     2521 gaagctgccg acgctgcgcc agcgcctgtt ccgctgcgtg agtatccgtg agaacgacga
     2581 cggcacgtat gccatcaccg ccgtgcagca tgtgccggaa aaagaggcca tcgtggataa
     2641 cggggcacac tttgacggtg accggcgcgg cacggtgaat ggtgtcacgc cgccagcggt
     2701 gcagcatctg accgccgaag tcaccgcaga cagcggggaa tatcaggtgc tggcgcgatg
     2761 ggacacgccg aaggtggtga agggtgtgag cttcctgctt cgcctgaccg tggcagcgga
     2821 cgacggcagt gagcggctgg tcagcacagc caggacgacg gaaaccacat accgcttcag
     2881 gcagctggcg ctggggaatt acagtctgac agtccgggcg gtaaatgccc gggggcagca
     2941 gggcgatccg gcgtcggtat cgttccggat tgcggcaccg gcagcgcctg tcactattga
     3001 actgataccg gggtattttc agataacggc ggtcccgaaa ctggctgtat acgacccgac
     3061 ggtgcagttt gagttctggt tttcggaaaa gcggattgcg gatatcaggc aggttgaaac
     3121 cagcgcccgc tatcttggca cggcgctgta ctggatagcc gccagtatca atatcaggcc
     3181 gggccatgat tattattttt acgttcgcag tgtgaacacc gttggcaaat cggcatttgt
     3241 ggaggccgtc ggtcgggcga gcgatgatgc ggaaggttat ctgagttttt ataaagggtt
     3301 gatcaataac acgcatctcg gcaaggagtt gtggacgcag attgataacg gtcagcttgc
     3361 gccggacctg actgaaatca ggacgtccat tacgaatgtc agcaatgaaa tcacgcaaac
     3421 cgtcaataaa aaactggaaa atcagagtgc tgcaatccag cagatacaga aagttcaggt
     3481 tgatacaaat aataa
//
LOCUS       DAJVUP010000256         3410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.263, whole genome shotgun sequence.
ACCESSION   DAJVUP010000256 DAJVUP010000000
VERSION     DAJVUP010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.263"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(20..322)
                     /locus_tag="OQQ75_004132"
     CDS             complement(20..322)
                     /locus_tag="OQQ75_004132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000890114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978260.1"
                     /translation="MLEIVLSPVKAQQFTVTLGAQVCTIRLNQRTTGMYIDIIVNGEP
                     CLYGVLCLNNNRIVRYGYLPFQGDLFFTDTEGNSDPDWRGLGSRYRLYWLLPEELI"
     gene            complement(322..1032)
                     /locus_tag="OQQ75_004133"
     CDS             complement(322..1032)
                     /locus_tag="OQQ75_004133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000010340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978261.1"
                     /translation="MSFSFDNISLNNFSLSESNVLSAVRGGGVLGLINSVLAPSFGIY
                     YARNDPAGAHQKGGKPFSPDSFVVVEVGAEASVSTVPVEQGAYTTFNKIQRSPELHVT
                     FIVEGWTAFSGSVPNLTNFSTTSRTNVLETLERMRTTAGLYDIETPDKTWTSCDLVKY
                     DYRMRSNNGPTLLTVTAVFQTVMNTGEVSVGSTDKSSPTDNDKAKGAASVKTQPVTAS
                     VTQPSDADRRSATNRGIT"
     gene            complement(1029..3050)
                     /locus_tag="OQQ75_004134"
     CDS             complement(1029..3050)
                     /locus_tag="OQQ75_004134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS1978262.1"
                     /translation="MAQVLDELVLSLGIDDRDFTAGEQAVHAALNRLTTVMEGVADTF
                     SQGQKKTSESLEKTGKDADKTARRMEDAGKRASRFFSGIRSEILALAGVSLTLGGLKN
                     LVTGFARDLNRLSVESDAFGMKARNLDGWLRAARANNVDEGEMSGAFSRLANAKAAFR
                     AGRSFDPVLQDLFQVAARAGISVDLNTDSTEAIMRKLAVIFPRLTKSEQTAYGNALGF
                     SYAGQQFLGSGHALKDVDEFTSRSQVTPGRTALARKLRKELVELDQTWSGIGMTISTA
                     LMPYALKLSHWLETLGDWMQQHPEEVNRFITTFLNDVESVASLANKAAGELGGWQNVI
                     ITLIGLKVASWVRGLTKALSGPGGLLFAITALYPVVDGLLTSIVGRENKDWLDSHGFF
                     WASDGTFFFNKKEMETYQTKLDVGEKPGNITRAQSPTVWQQGMLDTQASQATGREAAF
                     GESWLQGMRATQEKLGNAMQNRQRPTKTGEALLGWLQPKLSQLEEKYNLPPGLLRSVA
                     ITESRGNQFAVSPAGAMGLFQFMPKTASEFGLRGNDAFDPEKAADAAARKLGGLIRFF
                     HGDLAKALAAYNWGEGNVQRKGLAAAPEETRNYIPRVLANLPYPGAAMAIRSLHPAPV
                     SQSTVTETTHIGTLNVTTTSDNVKGITDDARRRITNSALVSVYSSGVTG"
     gene            complement(3034..3216)
                     /locus_tag="OQQ75_004135"
     CDS             complement(3034..3216)
                     /locus_tag="OQQ75_004135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000228829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS1978263.1"
                     /translation="MVDYVNVPRTIATVISSGKASKAELDSVLGVQDLWDLLEIIHVD
                     AHNEQVIQENRNGAGT"
BASE COUNT          798 a          993 c          814 g          805 t
ORIGIN      
        1 attttacgtt gtctgtagct catatcagtt cctcaggtaa cagccagtag agccggtacc
       61 gggatccgag cccccgccag tcagggtcac tattcccctc cgtgtcggta aaaaacaggt
      121 ccccctgaaa cggcaggtat ccgtaccgga caatccggtt attattcaga cacagcacgc
      181 catacaggca cggttcacca ttaacaatga tatcgatata catccccgta gtacgctgat
      241 tcaggcgaat ggtgcagacc tgagcgccca gtgtcaccgt aaactgctgg gctttaacgg
      301 gagataaaac aatttccagc atcaggtgat ccccctgttc gtggcacttc gtctgtcagc
      361 gtctgacggt tgtgtcaccg acgccgtaac tggctgcgtt ttaaccgatg cggccccttt
      421 tgctttatcg ttgtccgtgg gagacgactt atccgtactt cccactgaca cctctcctgt
      481 attcattacg gtctgaaata ccgcagtaac cgtcagtaag gtcggaccat tattacttcg
      541 cattcggtag tcatatttca caaggtcgca ggatgtccat gtcttgtccg gcgtctcaat
      601 atcgtagagt cctgccgtgg tacgcatcct ttcaagcgtt tccagcacat tcgtccgcga
      661 ggtggtggaa aaatttgtca ggttcgggac ggatccggaa aaggccgtcc acccctctac
      721 aatgaaagtc acatgcagtt ccggcgatct ctggatttta ttaaaggtgg tataagcccc
      781 ctgctccacg gggacggtgg aaacagaagc ctccgcgccc acctcaacga caacaaaaga
      841 atccggggag aaaggtttgc cacccttctg atgggcacct gccggatcat tccgtgcgta
      901 ataaataccg aatgacggtg ccagtacact attaatgagt cccaggacac cgccgccacg
      961 aactgcactc agtacgttac tttcactgag cgaaaagtta ttcagggaaa tattatcgaa
     1021 agaaaaactc atcctgttac cccgctggaa taaaccgaca caagcgccga attcgtgata
     1081 cgccgacgtg cgtcatcggt aatacccttc acattgtccg acgttgtggt gacattcagt
     1141 gtcccgatat gcgtggtttc cgttacggtg gactgcgata caggcgcagg atggagcgac
     1201 cgtatggcca ttgccgcacc cggataaggc aggttcgcca gcacccgcgg aatatagttg
     1261 cgggtctcct ccggagcagc agccagtccc ttacgctgaa catttccctc tccccagtta
     1321 tatgccgcca gagccttagc cagatcgcca tgaaaaaaac gtatcaggcc accaagtttt
     1381 ctcgcggcgg catcagcggc tttttcggga tcaaaggcat cgttccccct cagaccaaat
     1441 tcactggccg tcttcggcat gaactgaaac agtcccatcg caccagcagg tgagacggca
     1501 aactgattac cacgggattc ggtgatcgca acgctgcgca gcagtccggg cggcaggtta
     1561 tatttttcct ccagttgaga cagtttcggt tgcagccagc ctaacagggc ttccccggtc
     1621 ttcgtcggtc gctggcggtt ttgcatggca ttaccgagtt tttcctgcgt cgcacgcata
     1681 ccctgtagcc aggattcacc gaaggctgct tccctcccgg ttgcctgaga agcctgagta
     1741 tccagcatgc cctgctgcca tactgtgggt gattgtgccc gggtgatgtt gccaggcttt
     1801 tctccgacat ccagttttgt ctgatacgtc tccatctctt tcttattgaa aaagaaagtc
     1861 ccgtctgaag cccagaaaaa accatgtgaa tccagccagt ccttattttc cctgccaaca
     1921 atggatgtca gtaatccgtc aacaaccggg taaagcgccg ttatcgcaaa aagaaggcct
     1981 ccggggccac tgagggcttt tgtcagcccc cgcacccatg acgccacttt cagcccgatc
     2041 agcgtaataa tgacattctg ccagcccccc agttctccgg cagccttatt cgccagggag
     2101 gccactgact caacgtcatt cagaaatgtg gtgataaacc tgttcacttc ctccggatgt
     2161 tgctgcatcc agtcaccgag tgtctccagc cagtggctga gcttcagcgc gtacggcatc
     2221 aacgcggtgc taatcgtcat cccgatgccg gaccaggtct gatcgagctc aacaagctct
     2281 tttcgtagct tacgggccag cgctgtacgc cccggcgtaa cctgcgaacg ggaagtaaat
     2341 tcgtccacat ctttcagcgc atgaccggag ccaagaaact gctgtccggc ataactgaag
     2401 cccagcgcgt tgccgtaggc agtttgttcg gactttgtca gtcgcggaaa aataaccgcc
     2461 agcttgcgca tgatggcttc agtgctgtca gtatttaaat caacactaat gcccgccctg
     2521 gctgcaacct gaaacaaatc ctgtaacaca ggatcaaagg accttccggc tctgaaggcc
     2581 gcttttgcat ttgcaagccg ggaaaatgcc ccagacattt ccccttcatc aacattattt
     2641 gcccgcgcag cccgtaacca tccgtccaga tttctggcct tcatgccaaa agcatcggat
     2701 tccacggaca gacggttcag atcacgggca aaacctgtta ccaggttctt cagccccccc
     2761 agcgtcagac tgacacccgc aagagccaga atctcgctac ggatccctga aaaaaaacgg
     2821 gacgcccgtt tcccggcatc ttccattcga cgggccgttt tatcagcatc ttttccggtt
     2881 ttttccagtg attcactggt tttcttctgt ccctgactga atgtgtcagc gacaccttcc
     2941 atcaccgtcg tgagccggtt aagggcagca tgtactgcct gttccccggc agtaaagtcc
     3001 ctgtcatcaa tcccgaggga cagaacaagc tcatcaagta cctgcgccat ttctgttctc
     3061 ctgtatcacc tgttcgttat gggcatccac atgaattatt tccagcagat cccataagtc
     3121 ctgcacacca aggacagaat ccagttcagc ttttgaagcc ttaccggagg agataacggt
     3181 cgcaatggta cggggaacat taacgtaatc caccaccccg aacggtctgt cggggtcgag
     3241 ataacgcggg gggatatcta gctgacgacg gtagcgaaaa aatccacatg cagcttaaag
     3301 acctccgcac gcagattaag acgggtaatg atttcttcaa tatcctcttc aacaagcggt
     3361 ctccggatgc tgcgtttttt cggatcggga acaaactgca cacagtccat
//
LOCUS       DAJVUP010000257         3352 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.264, whole genome shotgun sequence.
ACCESSION   DAJVUP010000257 DAJVUP010000000
VERSION     DAJVUP010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.264"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(153..779)
                     /gene="dsbA"
                     /locus_tag="OQQ75_004136"
     CDS             complement(153..779)
                     /gene="dsbA"
                     /locus_tag="OQQ75_004136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA"
                     /protein_id="HCS1978264.1"
                     /translation="MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEF
                     FSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG
                     VEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKA
                     AADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK"
     gene            complement(796..1782)
                     /gene="srkA"
                     /locus_tag="OQQ75_004137"
     CDS             complement(796..1782)
                     /gene="srkA"
                     /locus_tag="OQQ75_004137"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response kinase SrkA"
                     /protein_id="HCS1978265.1"
                     /translation="MNNSAFTFQTLHPDTIMDALFEQGIRVDSGLTPLNSYENRVYQF
                     QDEDRRRIVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFY
                     FAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF
                     EDATLIPSGLKAAFLKATDELIAAVTAHWREDSTVLRLHGDCHAGNILWRDGPMFVDL
                     DDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY
                     YLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY"
     gene            complement(1859..2128)
                     /locus_tag="OQQ75_004138"
     CDS             complement(1859..2128)
                     /locus_tag="OQQ75_004138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HCS1978266.1"
                     /translation="MKCKRLNEVIEFLQPAWQKEPDLNLLQFLQKLAKESGFDGELAD
                     LTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE"
     gene            2198..2782
                     /gene="mobA"
                     /locus_tag="OQQ75_004139"
     CDS             2198..2782
                     /gene="mobA"
                     /locus_tag="OQQ75_004139"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HCS1978267.1"
                     /translation="MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALM
                     TQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT
                     PYIPPDLAARLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAF
                     MRLAGGHAVDFSDHKDAFVNVNTPEELARWQEKR"
     gene            2764..3291
                     /gene="mobB"
                     /locus_tag="OQQ75_004140"
     CDS             2764..3291
                     /gene="mobB"
                     /locus_tag="OQQ75_004140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418293.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HCS1978268.1"
                     /translation="MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT
                     HHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKL
                     DLILVEGFKHEEIAKIVLFRDGARHRPEELVIDRHVIAVASDVPLNLDVALLDINDVE
                     GLADFVVEWMQKQNG"
BASE COUNT          890 a          808 c          792 g          862 t
ORIGIN      
        1 aaatggtagt gtccgctatt gccagtacac ctcaatccac ttatgctgaa ataatgtcca
       61 gcggcaggat gtattatcag aatgtattta tatttattaa ataataaaaa aagcccgtga
      121 atattcacgg gctttatgta atttacattg aattattttt tctcggacag atatttcact
      181 gtatcagcat actgctgaac aaaaacatcc atattgctgg tatccatacc ctgcggattc
      241 agctgatatt taccgttaac aaacatcgcc ggaacaccgc gcaattgcac gtcagctgca
      301 gctttttcct gctgagctac cagagatttc accacgaagc tgttccacgc cgcgtcgtac
      361 tcttcacctt taatacctgc gttgataaat acatcgcgga tatcagaagc agaacgaatg
      421 gtctgggttt tctgtacgcc ttcaaacagc ggaacagtca ctttgtcttc cacgcccagc
      481 gccatcgcca cagcccatgc ctgagtcaga tctttgccca ggtcaccacc catgaagttg
      541 acgtggtatt tagtcatctt cacgccttcc ggcagttttt tcttcacatt atcagaaata
      601 tgcagaactt cttcaaactg atagcagtgc ggacagaaga aagagaaaaa ctccagcact
      661 tgcggcgcgc cagctaccgg tttttccagg gtagtgtact gtttaccatc ttcatactgc
      721 gccgccgatg cgctaaacgc taaaactaaa ccagccagcg ccagccaaat ctttttcatg
      781 atctactctc tccgattaat acataggtgt taattgtaaa gggggttctt gtagaacttt
      841 tgcctgttct ataaaagtcg ccgtttgtcg cagccagtaa tcttccccgg ttaaccacgg
      901 gaaatttttc gggaacgcgg gatcagccca acgccgcatt agccaggcaa gataataaac
      961 caaacgcatg gcgcgtaaag gttcaatcag tccgatttca gcggtgtcga actcgctaaa
     1021 ttcttcataa gcttcaataa tagtttccag ttgcatccgc tgctcggctt tatcgccatt
     1081 gagcaacatc cacaaatcct gaatagctgg accattacgt gcatcatcca gatcaacaaa
     1141 cattggacca tcgcgccaga gaatattccc ggcgtggcag tctccatgta agcgcagaac
     1201 ggtggaatct tcccgccagt gcgctgtaac ggcggcgatc agctcatctg tcgctttcag
     1261 gaatgccgct ttcaacccgg aaggtatcag tgtagcgtcc tcaaacagct tgcgtggctc
     1321 aatgagatat tcattcagac cgatggtcgg gcgatggata aaaagctgtt tgcgccccgt
     1381 ctggtgcata cgccctaaat aacgcccaac cgcttccatc tgatcgatat tatcagcttc
     1441 gaactggcga ccaccgacgc ttggaaaaac agcgaaataa aatccctgat gattcaataa
     1501 agtctgaccg ttaaaggcca caggtgctgc gaccggaact tcatcattta ccaactgcaa
     1561 cgcaaattga tgttcttcga ggatttgatc ggctgtccaa cgttcagggc gataaaattt
     1621 gacgacaata cgtcgacgat cttcgtcctg aaattgatag acacggtttt catagctgtt
     1681 aagcggggta agaccggaat ccacccggat cccttgctca aatagagcat ccatgatggt
     1741 atccgggtgt agtgtctgga aagtaaaagc gctgttgttc atcccatcat ccggaaaaca
     1801 ttacgaatga tgaaggatat catttcacga tgattttggt ggcgccgctt acaagctttt
     1861 actctttaat tacgccgcga gcgcgtaaca gcgccgtttt gaagtcttct tcataatctt
     1921 tctgcaaacc cgggatcacc gcatctttcg cggaatcacg cattttcagg tgatagatca
     1981 gaatgtcatc cgtcaaatcc gccagttcgc cgtcaaaacc tgactctttc gccagtttct
     2041 gcaaaaattg caacaggtta aggtctggct ctttttgcca ggctggctgg aggaattcaa
     2101 taacttcatt cagacgttta catttcatag tgatgctcct tactcttgag acagacacgt
     2161 tagcagggtc aatcccacaa taaaagaggc gatatcggtg aatctgatga cgacgataac
     2221 aggcgttgtg ctggcaggcg gtaaagccag acgaatgggt ggcgtagata aaggattgct
     2281 tgaattaaac ggcaaaccat tatggcaaca tgtcgctgac gcgcttatga cgcagctctc
     2341 tcacgtcgtg gttaatgcca atcgtcatca ggaaatctat caggcaagcg gtctgaaagt
     2401 gattgaagat tcactggcgg attacccagg ccctctggca ggaatgcttt cagtaatgca
     2461 gcaggaagct ggtgagtggt ttttgttttg cccgtgcgat acgccttaca ttccccctga
     2521 tttagcagcc cggcttaatc atcagcgcaa agatgcgcct gtcgtgtggg tccatgacgg
     2581 tgaacgcgat cacccgacta ttgctctggt aaaccgcgct attgagcctt tattactgga
     2641 atatctgcaa gcaggagaac gccgggtaat ggcatttatg cgtctggctg gcggtcatgc
     2701 ggttgatttc agcgatcata aagatgcatt tgttaacgtg aatacgccag aggagcttgc
     2761 ccgatggcag gaaaaacgat gataccgtta ctcgcctttg ccgcgtggag tggtaccgga
     2821 aaaactacgc ttttgaaaaa actgatcccg gcattatgcg ccagagggat ccgtccaggg
     2881 ctgattaagc atacgcacca tgatatggat gttgataagc caggcaaaga tagctatgag
     2941 ctgcgcaagg ctggcgcggc acaaaccatc gttgccagcc agcaacgatg ggccttgatg
     3001 acggaaacac cagacgaaga agagctggat ctacagtttc tcgcaagtcg aatggatacc
     3061 tcaaagctgg atttgattct ggtcgaaggg tttaagcatg aagagatcgc aaagattgtg
     3121 ctgtttcgcg atggagccag acatcgacct gaagaattag tgatagacag gcatgttatt
     3181 gctgtagcca gtgatgtgcc gcttaatctt gatgtcgcat tactggatat taatgatgtt
     3241 gaggggctgg ctgattttgt ggtggagtgg atgcaaaagc agaacggata agcaagagta
     3301 ggctggatca gacgcagcca gtgtcgcatc cgaccttttt ctgcaccaac gc
//
LOCUS       DAJVUP010000258         3314 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.265, whole genome shotgun sequence.
ACCESSION   DAJVUP010000258 DAJVUP010000000
VERSION     DAJVUP010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.265"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1777
                     /locus_tag="OQQ75_004141"
     CDS             <1..1777
                     /locus_tag="OQQ75_004141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS1978269.1"
                     /translation="HYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQ
                     VLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIG
                     RRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNST
                     GGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLG
                     EKPAVLLAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGA
                     NILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLG
                     LTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDIL
                     SQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLN
                     VVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVD
                     VIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLRSINV
                     DDFDPEELATKPVKLPEKVRKVEAA"
     gene            complement(1820..2266)
                     /gene="ivy"
                     /locus_tag="OQQ75_004142"
     CDS             complement(1820..2266)
                     /gene="ivy"
                     /locus_tag="OQQ75_004142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ivy family C-type lysozyme inhibitor"
                     /protein_id="HCS1978270.1"
                     /translation="MFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQG
                     HKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFS
                     TIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK"
     gene            2447..3217
                     /gene="yafV"
                     /locus_tag="OQQ75_004143"
     CDS             2447..3217
                     /gene="yafV"
                     /locus_tag="OQQ75_004143"
                     /EC_number="3.5.1.111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutaramate amidase"
                     /protein_id="HCS1978271.1"
                     /translation="MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMF
                     TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV
                     HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVYYDLRFPVWSRNLNDYDLAI
                     YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA
                     TADAHQATRIDAELSMMALREYREKFPAWQDADEFRLR"
BASE COUNT          737 a          845 c          951 g          781 t
ORIGIN      
        1 tcactatctg ccgcgtctgg cgcgtggtca ggagatccct tgctttgcac tgacaagccc
       61 ggaagcgggt tccgatgcgg gcgcgattcc ggacaccggg attgtctgca tgggcgaatg
      121 gcagggccag caggtgctgg ggatgcgtct gacttggaac aaacgctata ttacgctggc
      181 accgattgcg actgtgcttg ggctggcgtt taaactctcc gacccggaaa agctgctggg
      241 tggcgcagaa gatttaggta ttacctgtgc gctgatcccg accaccacgc cgggcgtgga
      301 aattggtcgt cgccacttcc cgctgaacgt accgttccag aacggaccga cgcgcggtaa
      361 agatgtcttc gtaccgatcg attacatcat cggtgggccg aaaatggccg ggcaaggctg
      421 gcggatgctg gtggagtgcc tctcggtagg ccgcggcatc accctgcctt ccaactcaac
      481 cggcggcgtg aaatcggtag cgctggcaac gggcgcgtat gctcacattc gccgtcagtt
      541 caaaatctct atcggaaaga tggaagggat tgaagagccg ctggcgcgta ttgccggtaa
      601 tgcctacgtg atggatgctg cggcatcgct gattacctac ggcattatgc tcggcgaaaa
      661 acctgccgtg ctgttggcta tcgttaagta tcactgtacc caccgcgggc agcagtcgat
      721 tattgatgcg atggatatca ctggtggcaa aggcattatg ctcgggcaaa gcaacttcct
      781 ggcgcgtgct taccagggcg caccgattgc catcaccgtt gaaggggcta acattctgac
      841 ccgcagcatg atgatcttcg gacaaggagc gattcgttgc catccgtacg tgctggaaga
      901 gatggaagcg gcgaagaaca atgacgtcaa cgcgttcgat aaactgttgt tcaaacatat
      961 cggtcacgtc ggtagcaaca aagttcgcag cttctggctg ggcctgacgc gcggtttaac
     1021 cagcagcacg ccaaccggcg atgccactaa acgctactat cagcacctga accgcctgag
     1081 cgccaacctc gccctgcttt ctgatgtctc gatggcagtg ctgggcggca gcctgaaacg
     1141 tcgcgagcgc atctcggccc gtctggggga tattttaagc cagctctacc tcgcctctgc
     1201 cgtgctgaag cgttatgacg acgaaggccg taatgaagcc gacctgccgc tggtgcactg
     1261 gggcgtacaa gatgcgctgt atcaggctga acaggcgatg gatgatttac tgcaaaactt
     1321 cccgaaccgc gtggttgccg ggctgctgaa tgtggtgatc ttcccgaccg gacgtcatta
     1381 tctggcacct tctgacaagc tggatcataa agtggcgaag attttacaag tgccgaacgc
     1441 cacccgttcc cgcattggtc gcggtcagta cctgacgccg agcgagcata atccggttgg
     1501 cttgctggaa gaggcgctgg tggatgtgat tgccgccgac ccaattcatc agcggatctg
     1561 taaagagctg ggtaaaaacc tgccgtttac ccgtctggat gaactggcgc acaacgcgct
     1621 ggcgaagggg ctgattgata aagatgaagc cgctattctg gtgaaagctg aagaaagccg
     1681 tctgcgcagt attaacgttg atgactttga tccggaagag ctggcgacga agccggtaaa
     1741 gttgccggag aaagtgcgga aagttgaagc cgcgtaattg aataacggag ccgaaaggct
     1801 ccgtttcttt atccgctaat tatttaaaat taaagccatc cggatggttt tccaggctgc
     1861 cggtcaacgc cgcgaacagc accgttttac catcaatcga aagcgcatcg ttcacattca
     1921 gccaggtgag tttctcttgc gacgttttct catcaatagt cgagaacagc cccgtcatct
     1981 gattagattt ctcggaccac atcacagcga tacgttgcga gccacagtca tgcggtttgc
     2041 acgcgctcat cacctgatac gtctcatctc ccaacgttac ggtttgtgcg ggagtataag
     2101 taccgccttt catcacccag gcaggcagct tatgcccttg taccatctga ttaaatgcag
     2161 ctttggtggt ttcgcccttt gcaaggctgc taatggttaa atcatcctgc gccattgcac
     2221 tggtggcgat gaccagagcg gcgactgtcg ttattgcctt aaacatcatt cctcccgagc
     2281 ttatcctgcc catgttatta accttctaaa gcctggcgat aacacgataa tttgcaaatc
     2341 agatatttcc aatatcagca tttgttatca atttattctg cgctaaggca actgcctgat
     2401 aaggtgttaa agttataaaa cccttcgcat aaaggagttg tacaccgtgc ctggtttgaa
     2461 gattacgctt ttgcagcaac cactggtgtg gatggatggc cctgccaacc tgcgtcattt
     2521 tgatcgtcaa ctggaaggta ttaccgggcg cgatgtgatc gttctaccgg agatgtttac
     2581 cagcggcttt gccatggaag cggcagcttc gtcgctagca caagatgacg tagtgaactg
     2641 gatgacagct aaggcgcagc agtgcaatgc gctgatagca ggcagtgttg cattacaaac
     2701 ggagtctggt tcggttaacc gctttttgct ggttgagccg ggcggcacgg tacattttta
     2761 tgataagcgt catctgttcc gcatggcaga tgagcatcta cattataaag cgggcaatgc
     2821 gcgagtgatt gtggaatggc gcggctggcg tattttgccg ttggtgtact acgacttacg
     2881 ttttccggtg tggtcgcgca atctcaacga ttatgacctc gccatctacg ttgccaactg
     2941 gcctgctccg cgctctctgc actggcaggc attgctgacg gcccgcgcga ttgagaatca
     3001 ggcgtatgtg gcgggatgca atcgcgtcgg cagcgatggc aacggctgcc attatcgcgg
     3061 tgacagccgg gtgattaatc cacaaggcga gattatcgct actgccgacg cgcatcaggc
     3121 aacgcgcatt gatgcggagc tgtcgatgat ggcattgcgg gaatatagag aaaagtttcc
     3181 ggcatggcag gatgcggatg agtttaggtt gcggtgagtg ggggttgtgt ttaaggctgg
     3241 gggagagtcg gggtaagact acgaaagccc gctctccgca aggactgacg ccagatagtt
     3301 tctgtccata gctg
//
LOCUS       DAJVUP010000259         3240 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.266, whole genome shotgun sequence.
ACCESSION   DAJVUP010000259 DAJVUP010000000
VERSION     DAJVUP010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3240
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.266"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..2566)
                     /locus_tag="OQQ75_004144"
                     /pseudo
     CDS             complement(1..2566)
                     /locus_tag="OQQ75_004144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415720.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT          807 a          755 c          750 g          928 t
ORIGIN      
        1 cagatgtata ttgaggccat tactcgcctt catagccatc tcattctggt ggctgtatgt
       61 aagctgggtt tgcggctcta tatagaaccc ataaccagta ggggacaggt tgaacctctg
      121 cccggcttct agggagatgc tcattccatt cgcagtgccg ttggcgttaa cgccgttgtt
      181 atgactgtcc agtacgtgga aactattttt ctggcgcgat gcttttataa cgagatcgct
      241 gtaaaaaccg ttttgtgcca tgtaactggc gtacattccc atgtagtctg aacgtgcggt
      301 accgtcgcct ccgctatagt ccggcgatgc atgtgttgag ccaatataca gaccgacata
      361 caacggcatt tcatcagaga gacgtttatc cccaccaaac tggataccgc tgtaacccat
      421 gtcaaagccg ctcagtttgc cactggcaaa ggagtccagg cttcccccat aactgcgcaa
      481 ccagatatta ccgtctttac tctgatttcg caggtcaccc atccgttgca tcagcgtacg
      541 gttttcaaca tagttcaata agtaaccgac attgagataa ttgccgccag catctgcggt
      601 cgtggtgggt ttaggcgtgg gagcgggttc aggcgtagga tcggggttga ctatgggagg
      661 ctgagcggga gctggtgtgg gttcaggatt aggagtcggt tccggaactg tcccggaagc
      721 gtaaagctcc cagttagtgc catttttacg cacatcgtac agatatcccc cccaactcaa
      781 cctgagaaga cgcgctgaac gaggccgcgc cgtcagtggt ttttaccact gtcagaactt
      841 catttcccgt tgtggcctcg ctgccctggt tgcggatagc caatacgtga ttaccagcac
      901 tactcccgct gatattcaat aaatcccctt tattattaac gccattaccc tcgccaacaa
      961 catcagcacg cataataaag gtactgttac cgctcaggtt ctctacgttt aatgtggcaa
     1021 atgtgccggc agttgacccg tggctggcaa aatcgacagt tgaatggctc agcgccagcg
     1081 tgtcgagatt agaattactt gttacgttcc agacgctgtt attcattgca acgtccagtt
     1141 ttccgccatt gacattatcg ctgagggagg aacctgtcca aaccgaccca gggtgcatat
     1201 ccagattgat tagcccacct ttggaaaaaa cgctaccgtt gataagcata cgacccgagg
     1261 cgttgatgcg gctggcggca taaccatcgt catgttgcgt tgcaatggcc atctggtcgg
     1321 gtgtactcat atcaatgacc agatcgctcg tgaggtcgat ctggctgttg gtcatggcat
     1381 aaattcccct ggctcctgcc gcgccggtga tagccaaact gtctccggtt attctaccgc
     1441 cgctgagcgc ccacaaaccc agcgccagac tgccattacg atcaactgta atatcggtat
     1501 tttgcatgtt gacaacagcc gttgccgtct gggccgaggc accataagaa ccgccggaaa
     1561 agatgctgtt tcgttgcgct gccgtgccag aaaaattgat tgtcgcgtct gaaccactgg
     1621 tgacgaggcc accgccctgc gcggaagaaa tatggctatc tgcaccgata gtggttgtac
     1681 caccacgaac ttcgacgcca ttggccgcgg ctccagttac atcaacagtg agtgcattcg
     1741 cgctaacctg gccaaagctc cagaggccgt gtgcattatc gccattggtt ttaatggaac
     1801 tgtttgttcc gagatcgaca acagagtttt tctgtacgtt tatccccatg gcgctgtagc
     1861 cctgaacatc gattgtcagg tctgtagccg taaaacgcgc agcaccattg gcgttattgc
     1921 cgttgagacc accgatataa acacctgtac ttccatcggt cgtgatttta cttccgcttc
     1981 caagatcgac actggtgcca tagtcattga tggttaggcc tataccgttc gagttttcaa
     2041 tggtgaattg agtggctgtt agtgttgagc tatgcccaat aatgatgccg tcatcgttac
     2101 tcttaatggt gctgcctgtg cctaagtcag catgggtata gtcaccaatt aagttaatgc
     2161 cgatggcaga ggtttgacca acaacatcta ctgtgagtcg gttagctgtc agggagctgt
     2221 ttttgccctg aataatgatt ccttttgcat atccagaggc gtcgttgaca ttgacggtga
     2281 catcattacc caggttgata ttgccaggcg tgtttcctgc tggggtcatt acaccataga
     2341 ggtttcctga tggatcggcg gtatctcctg taattctgtc accatcatta atagtaatat
     2401 tggtgccata ttgacttcct gtatcagcag ctatcagcag gggggaaaag ataattgcat
     2461 tcaaaccaat agcgccaaat tttatcagtt gaattgaggg cgaacggatt tttaattcag
     2521 cgagacgatc tgctttggta ttcccattgt gttgtttgat gcccatacca ctcctatata
     2581 gtacccagac tatgggtcta tggattttgt cattttgttt aaatcaatga ataatatcct
     2641 cttatcatca tgatatttgt atggtgcaat catgatgagc ttctcagaga ataattctct
     2701 attaccgggc aaaatcagga acacaggaat taatatatat ttaacatccc ccttacaaag
     2761 gtgagtttat atcgagttat tccctaagtt gtcgttactt attccaattc gttactataa
     2821 atatggcaaa aatattacaa caaacagcgg ttaaaaaatt tggtgaagat tttttgtaat
     2881 aatcctaatt agttatggga atttcgcttg atgtatctgc ataacaaaaa caatatgcgc
     2941 catttttgca ttactaataa gaaaaagcaa aaaacatcga tattcatttt tggtcaatgg
     3001 gttttctggc ctatcgttgt tattgtgcta ctggttatca ttttcatctt gccagcatat
     3061 tggagcgtga tcaattttga tcagctgtga aggtggctga tgtgtagtga tacaaaaact
     3121 tacgttatat cactgctaat gagatatccg tcatctgaac acttatgtct ttaattattc
     3181 tcgtggttca ctataggcaa taagcacaaa agtgtaggat gttacaagaa tgattaggac
//
LOCUS       DAJVUP010000260         3203 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.267, whole genome shotgun sequence.
ACCESSION   DAJVUP010000260 DAJVUP010000000
VERSION     DAJVUP010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.267"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            102..3005
                     /locus_tag="OQQ75_004145"
     rRNA            102..3005
                     /locus_tag="OQQ75_004145"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            3101..>3203
                     /gene="rrf"
                     /locus_tag="OQQ75_004146"
     rRNA            3101..>3203
                     /gene="rrf"
                     /locus_tag="OQQ75_004146"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          853 a          701 c          991 g          658 t
ORIGIN      
        1 tcaagctgaa aattgaaaca ctgaacaacg aaagttgttc gtgagtctct caaattttcg
       61 caacacgatg atgaatcgta agaaacatct tcgggttgtg aggttaagcg actaagcgta
      121 cacggtggat gccctggcag tcagaggcga tgaaggacgt gctaatctgc gataagcgtc
      181 ggtaaggtga tatgaaccat tataaccggc gatttccgaa tggggaaacc cagtgtgatt
      241 cgtcacacta tcattaactg aatccatagg ttaatgaggc gaaccggggg aactgaaaca
      301 tctaagtacc ccgaggaaaa gaaatcaacc gagattcccc cagtagcggc gagcgaacgg
      361 ggagcagccc agagcctgaa tcagtgtgtg tgttagtgga agcgtctgga aaggcgtgcg
      421 atacagggtg acagccccgt acacaaaaat gcacatattg tgagctcgat gagtagggcg
      481 ggacacgtgg tatcctgtct gaatatgggg ggaccatcct ccaaggctaa atactcctga
      541 ctgaccgata gtgaaccagt accgtgaggg aaaggcgaaa agaaccccgg cgaggggagt
      601 gaaaaagaac ctgaaaccgt gtacgtacaa gcagtgggag cacgcttagg cgtgtgactg
      661 cgtacctttt gtataatggg tcagcgactt atattctgta gcaaggttaa ccgaataggg
      721 gagccgaagg gaaaccgagt cttaactggg cgttaagttg cagggtatag acccgaaacc
      781 cggtgatcta gccatgggca ggttgaaggt tgggtaacac taactggagg accgaaccga
      841 ctaatgttga aaaattagcg gatgacttgt ggctgggggt gaaaggccaa tcaaaccggg
      901 agatagctgg ttctccccga aagctattta ggtagcgcct cgtgaattca tctccggggg
      961 tagagcactg tttcggcaag ggggtcatcc cgacttacca acccgatgca aactgcgaat
     1021 accggagaat gttatcacgg gagacacacg gcgggtgcta acgtccgtcg tgaagaggga
     1081 aacaacccag accgccagct aaggtcccaa agtcatggtt aagtgggaaa cgatgtggga
     1141 aggcccagac agccaggatg ttggcttaga agcagccatc atttaaagaa agcgtaatag
     1201 ctcactggtc gagtcggcct gcgcggaaga tgtaacgggg ctaaaccatg caccgaagct
     1261 gcggcagcga cgctgatgcg ttgttgggta ggggagcgtt ctgtaagcct gtgaaggtgt
     1321 gctgtgaggt atgctggagg tatcagaagt gcgaatgctg acataagtaa cgataaagcg
     1381 ggtgaaaagc ccgctcgccg gaagaccaag ggttcctgtc caacgttaat cggggcaggg
     1441 tgagtcgacc cctaaggcga ggccgaaagg cgtagtcgat gggaaacagg ttaatattcc
     1501 tgtacttggt gttactgcga aggggggacg gagaaggcta tgttggccgg gcgacggttg
     1561 tcccggttta agcgtgtagg ctggttttcc aggcaaatcc ggaaaactaa ggctgaggcg
     1621 tgatgacgag gcactacggt gctgaagcaa caaatgccct gcttccagga aaagcctcta
     1681 agcatcaggt aacatcaaat cgtaccccaa accgacacag gtggtcaggt agagaatacc
     1741 aaggcgcttg agagaactcg ggtgaaggaa ctaggcaaaa tggtgccgta acttcgggag
     1801 aaggcacgct gatatgtagg tgaagtccct cgcggatgga gctgaaatca gtcgaagata
     1861 ccagctggct gcaactgttt attaaaaaca cagcactgtg caaacacgaa agtggacgta
     1921 tacggtgtga cgcctgcccg gtgccggaag gttaattgat ggggtcagcg caagcgaagc
     1981 tcttgatcga agccccggta aacggcggcc gtaactataa cggtcctaag gtagcgaaat
     2041 tccttgtcgg gtaagttccg acctgcacga atggcgtaat gatggccagg ctgtctccac
     2101 ccgagactca gtgaaattga actcgctgtg aagatgcagt gtacccgcgg caagacggaa
     2161 agaccccgtg aacctttact atagcttgac actgaacatt gagccttgat gtgtaggata
     2221 ggtgggaggc tttgaagtgt ggacgccagt ctgcatggag ccgaccttga aataccaccc
     2281 tttaatgttt gatgttctaa cgttgacccg taatccgggt tgcggacagt gtctggtggg
     2341 tagtttgact ggggcggtct cctcctaaag agtaacggag gagcacgaag gttggctaat
     2401 cctggtcgga catcaggagg ttagtgcaat ggcataagcc agcttgactg cgagcgtgac
     2461 ggcgcgagca ggtgcgaaag caggtcatag tgatccggtg gttctgaatg gaagggccat
     2521 cgctcaacgg ataaaaggta ctccggggat aacaggctga taccgcccaa gagttcatat
     2581 cgacggcggt gtttggcacc tcgatgtcgg ctcatcacat cctggggctg aagtaggtcc
     2641 caagggtatg gctgttcgcc atttaaagtg gtacgcgagc tgggtttaga acgtcgtgag
     2701 acagttcggt ccctatctgc cgtgggcgct ggagaactga ggggggctgc tcctagtacg
     2761 agaggaccgg agtggacgca tcactggtgt tcgggttgtc atgccaatgg cactgcccgg
     2821 tagctaaatg cggaagagat aagtgctgaa agcatctaag cacgaaactt gccccgagat
     2881 gagttctccc tgactccttg agagtcctga aggaacgttg aagacgacga cgttgatagg
     2941 ccgggtgtgt aagcgcagcg atgcgttgag ctaaccggta ctaatgaacc gtgaggctta
     3001 accttacaac gccgaaggtg ttttggcgga tgagagaaag attttcagcc tgatacagat
     3061 taaatcagaa cgcagaagcg gtctgataaa acagaatttg cctggcggcc gtagcgcggt
     3121 ggtcccacct gaccccatgc cgaactcaga agtgaaacgc cgtagcgccg atggtagtgt
     3181 ggggtctccc catgcgagag tag
//
LOCUS       DAJVUP010000261         3193 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.268, whole genome shotgun sequence.
ACCESSION   DAJVUP010000261 DAJVUP010000000
VERSION     DAJVUP010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.268"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            88..1116
                     /gene="murB"
                     /locus_tag="OQQ75_004147"
     CDS             88..1116
                     /gene="murB"
                     /locus_tag="OQQ75_004147"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HCS1978272.1"
                     /translation="MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVL
                     ILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMP
                     GLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDCVELATGKQVRLTAKECRFGYRD
                     SIFKHEYQDRFAIVAVGLRLLKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKL
                     PDPKVNGNAGSFFKNPVVSAETAKALLAQFPTAPNYPQAGGSVKLAAGWLIDQCQLKG
                     MQMGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGE
                     VSAVETIS"
     gene            1113..2078
                     /gene="birA"
                     /locus_tag="OQQ75_004148"
     CDS             1113..2078
                     /gene="birA"
                     /locus_tag="OQQ75_004148"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HCS1978273.1"
                     /translation="MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR
                     DWGVDVFTVPGKGYSLPEPIQLLNAEQILGQLDGGSVAVLPVIDSTNQYLLDRIGELK
                     SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEV
                     LRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESV
                     VNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPV
                     KLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK"
     gene            complement(2107..3057)
                     /gene="coaA"
                     /locus_tag="OQQ75_004149"
                     /gene_synonym="panK"
     CDS             complement(2107..3057)
                     /gene="coaA"
                     /locus_tag="OQQ75_004149"
                     /gene_synonym="panK"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HCS1978274.1"
                     /translation="MSIKEQTLMTPYLQFDRNQWAAQRDSVPMTLSEDEIARLKGINE
                     DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS
                     TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV
                     SDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVF
                     VSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMT
                     LWKEINWLNLKQNILPTRERASLILTKSANHAVEEVRLRK"
BASE COUNT          875 a          691 c          807 g          820 t
ORIGIN      
        1 ctacaaactc tccctgtcgt cataactaca agccatcccc ccacagatac ggtaaactag
       61 cctcgttttt gcatcaggaa agcagctatg aaccactcct taaaaccctg gaacacattt
      121 ggcattgatc ataatgctca gcacattgta tgtgccgaag acgaacaaca attactcaat
      181 gcctggcagt atgcaaccgc agaaggacaa cccgttctta ttctgggtga aggaagtaat
      241 gtactttttc tggaagacta tcgcggcacg gtgatcatca accggatcaa aggtatcgaa
      301 attcatgatg aacctgatgc gtggtattta catgtaggag ccggagaaaa ctggcatcgc
      361 ctggtaaaat acactttgca ggaaggtatg cctggtctgg aaaatctggc attaattcct
      421 ggttgtgtcg gctcatcacc tatccagaat attggtgctt atggcgtaga attacagcga
      481 gtttgcgctt atgttgattg tgttgaactg gcgacaggca agcaagtgcg cttaactgcc
      541 aaagagtgcc gttttggcta tcgcgacagt atttttaaac atgaatacca ggatcgcttc
      601 gccattgtag ccgtaggtct gcgtctgcta aaagagtggc aacctgtact aacgtatggt
      661 gacttaactc gtctggatcc tacaacagta acgccacagc aagtatttaa tgcggtgtgt
      721 catatgcgca ccaccaaact ccctgatcca aaagtgaatg gcaatgccgg tagtttcttc
      781 aaaaaccctg ttgtatctgc cgaaacggct aaagcattac tggcgcaatt tccaacagca
      841 ccaaattacc cccaggcggg tggttcagta aaactggcag caggttggct tattgatcag
      901 tgccagctaa aagggatgca aatgggtggg gctgcggtgc accgtcaaca ggcgttagtt
      961 ctcattaatg aagacaatgc aaaaagcgaa gatgtggtgc aactggcaca ccatgtaaga
     1021 caaaaagtgg gtgaaaaatt taatgtctgg cttgagcctg aagtccgctt tattggtgca
     1081 tcaggtgaag tgagcgcagt ggagacaatt tcatgaagga taacaccgtg ccactgaaat
     1141 tgattgccct gttagcgaac ggtgaatttc actctggcga gcagttgggt gaaacgctgg
     1201 gaatgagccg ggcggctatt aataaacaca ttcagacact gcgtgactgg ggcgttgatg
     1261 tctttaccgt tccgggtaaa ggatacagcc tgcctgagcc catccagtta cttaatgctg
     1321 aacagatatt gggtcagctg gatggcggta gtgtagccgt gctgccagtt attgactcca
     1381 cgaatcagta ccttcttgat cgtatcggag agcttaaatc gggcgatgcc tgtgttgcag
     1441 aataccagca ggctggccgt ggtcgccggg ggcggaaatg gttttcgcct tttggcgcaa
     1501 acttatattt gtcgatgttc tggcgtctgg aacaaggccc ggcggcggcg attggtttaa
     1561 gtctggttat cggtatcgtg atggcggaag tattacgcaa gctgggagca gataaagttc
     1621 gtgtcaaatg gcctaatgac ctctatctgc aggatcgcaa gctggcaggc attcttgtgg
     1681 agctgactgg caaaactggc gatgcggcgc aaatagtcat tggagccggg atcaacatgg
     1741 caatgcgccg tgttgaagag agtgtcgtta atcaggggtg gatcacgctg caggaagcgg
     1801 ggatcaatct cgatcgtaat acgttggcgg ccatgctaat acgtgaatta cgtgctgcgt
     1861 tggaactctt cgaacaagaa ggattggcac cttatctgtc gcgctgggaa aagctggata
     1921 attttattaa tcgcccagtg aaacttatca ttggtgataa agaaatattt ggcatttcac
     1981 gcggaataga caaacagggg gctttattac ttgagcagga tggaataata aaaccctgga
     2041 tgggcggtga aatatccctg cgtagtgcag aaaaataaga aaggggagta ttcgctcccc
     2101 tgcaaattat ttgcgtagtc tgacctcttc taccgcatga ttagcacttt tcgtcaggat
     2161 taaactggcg cgctcacgag taggtagaat attttgcttt aagttcagcc agttgatctc
     2221 tttccacaat gtcatggcag tcttaatcgc ttcttcttta gttaatttcg cgtagttatg
     2281 aaaataggaa tccgggtcgg taaaagcccc ttcgcggaat ttcaggaaac ggttgatata
     2341 ccacgtctga agtaagtctt ccggtgcatc aacatatatc gaaaaatcga caaaatcaga
     2401 aacaaataca tgatgtggat cgtgtggata atccattccg ctctgtaaga catttaaccc
     2461 ttcaagaatt aaaatatcag gctgaacaac agttttatct ccatccggga tcacatcata
     2521 aataagatgc gagtaaacag gggctgtaac gtttggcacg ccggacttga gatcggaaac
     2581 aaacttcacc aggcgatgca tatcatacga ttccgggaag cctttcttct tcatcagacc
     2641 acgttctttc agaacctgat tagggtgaag gaagccatct gtagtgatca gttcaacacg
     2701 acgatgttcc ggccaacggc ttaatagcgc ctgcaataca cgggcggttg tacttttccc
     2761 caccgcgaca ctaccagcaa tactgataat gtaaggaatg cgttgcccgt tggtaccaag
     2821 aaactgttcc agaactgcct gacggcgcag attcgagctt atatagaagt tcagcaaacg
     2881 tgacagaggt aaatagatct cggcaacttc ttctaacgag agatcttcat taataccttt
     2941 gagacgggcg atctcatctt ccgataacgt cataggtacg gaatcacgct gagctgccca
     3001 ctggttgcgg tcaaactgta ggtaaggcgt cattaacgtt tgctctttta tactcataag
     3061 catgtttctg gcggtcatag ctctatcggc aaagcgatat ttgccatggc gcgtcacagt
     3121 tctgttgaat gggttaatgg gcaggagggt aacaccagat ggggaggaat aataagaaaa
     3181 aatctctcct agg
//
LOCUS       DAJVUP010000262         3172 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.269, whole genome shotgun sequence.
ACCESSION   DAJVUP010000262 DAJVUP010000000
VERSION     DAJVUP010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.269"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            345..504
                     /locus_tag="OQQ75_004150"
                     /pseudo
     CDS             345..504
                     /locus_tag="OQQ75_004150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001066419.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(722..2812)
                     /gene="iha"
                     /locus_tag="OQQ75_004151"
     CDS             complement(722..2812)
                     /gene="iha"
                     /locus_tag="OQQ75_004151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional siderophore receptor/adhesin Iha"
                     /protein_id="HCS1978275.1"
                     /translation="MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAA
                     SVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDG
                     VRQGGSSDVTPNGFSAMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKN
                     ADKWLSSVNAGLNLQESNKWGNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSL
                     SDTAATRIPYPTESQNYNLGARLDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGY
                     DRTLRYERNKISAGYDHTFTFGTWKSYLNWNETENKGRELVRSVLKRDKWGLAGQPRE
                     LKESNLILNSLLLTPLGESHLVTVGGEFQSSSMKDGVVLASTGETFRQKSWSVFAEDE
                     WHLTDALALTAGSRYEHHEQFGGHFSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLH
                     KGISGVSGQGKTNLLGNPDLKPEESVSYEAGVYYDNPAGLNANVTGFMTDFSNKIVSY
                     SINDNTNSYVNSGKARLHGVEFAGTLPLWSEDVTLSLNYTWTRSEQRDGDNKGAPLSY
                     TPEHMVNAKLNWQITEEVASWLGARYRGKTPRFTQNYSSLSAVQKKVYDEKGEYLKAW
                     TVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSLYSAGKSTLYAGDYFQTGSSTTGYV
                     IPERNYWMSLNYQF"
BASE COUNT          795 a          836 c          732 g          809 t
ORIGIN      
        1 gacctctcag taaatatcaa tacggttctg gcgagccgct tacgtgcagc agtcttatcc
       61 ggcagtttaa aggggaggac ggagaccaat gaggcactgg agcagattca gtgcagaggt
      121 gacctgcttt atcaaactta attgtgacaa aatggcgatt gagaaggtgc aattgactta
      181 tccggattcg gtcgtggcga ggtggtgccc ctgcattctg ctaaccgggt tatgagccag
      241 gagtcagcga tagacaaagg gacttatctg accgggcccc cggaaaaatg gcgggagaga
      301 atgatacctt cctgctgacg agaccggact ttgagatgac gagcgatagt gcggcagtga
      361 tgtacagcct gatcggtagc tgcaaaactt aacggaatcg agccggaaac gtggctacgc
      421 cacgtgatca gtgtaatcaa cacctggcct gccaaccgca tgaaagagtt gttgccctgg
      481 aacgtcactc tctctgtaaa ctaattttta ccccacgtcc ttcacggtgc gcttacactc
      541 tggacaagta tgtaaatgat aagttaaaaa taatccgtgc atttcctgtg acgatattag
      601 ttgttggtaa cgaaatctca ttagcggatc ggaaatgcac ttaacctaat acgttgccac
      661 tgttccgcca ggagttgcag tggcaacgta ttctaccgtc agtgatagcg ttttgttatt
      721 atcagaactg atagttcagc gacatccagt aatttcgctc aggtatcaca tatcctgttg
      781 ttgatgatcc cgtctggaag taatcaccgg catacagcgt actcttaccg gcactgtaca
      841 ggctcacgtc actgtaatcc ttgttgagca ggttattcac cgcagcattc agcgtcaggg
      901 catccgtcat cttccaggac agacctgcat ccaccaccgt ccaggctttc aggtattctc
      961 ctttctcatc atacactttc ttctgtacag cgctcagtga cgaataattc tgggtgaaac
     1021 gtggtgtttt cccgcgataa cgggcaccca gccatgatgc cacctcttcg gtgatctgcc
     1081 agttcagttt cgcattcacc atgtgttcag gggtataact cagcggcgca cctttgttat
     1141 caccatcacg ttgttcactt cgggtccagg tgtaattcag tgacagcgtg acatcctctg
     1201 accacagcgg caatgtgccg gcaaattcca caccgtgcaa ccgggccttt ccgctgttta
     1261 catagctatt ggtgttatca tttatggaat aagagacaat cttgttggag aagtcagtca
     1321 taaaacctgt gacattggca ttcagaccgg cggggttatc gtaatacacc ccagcctcat
     1381 aactgacgct ctcttccggc ttcaggtcgg ggttaccaag tagatttgtt tttccctgcc
     1441 cggacacacc actaatccct ttatgtagct gccccattct gggtgcctta tatcccgtgg
     1501 tcacaccgcc tttcagcgtc caggcatctg ccacatccca gaccagatat gcacgcggac
     1561 tgaagtgtcc cccgaattgc tcatgatgtt catagcggct gcccgcagtc agcgcaagtg
     1621 catccgtgag atgccactca tcctcagcaa ataccgacca gcttttctgc cggaaagttt
     1681 cacctgtgct ggcaaggaca actccgtctt tcatggacga gctctgaaac tcgcccccca
     1741 ccgtaaccag atgagattct cccagagggg taagcagtaa tgaattcagg ataaggttcg
     1801 attccttaag ctcccgcggc tgaccggcaa gcccccattt gtcgcgcttc agtacactgc
     1861 gtacgagctc acgaccttta ttttctgtct cgttccagtt cagatacgat ttccatgttc
     1921 cgaaggtgaa agtatgatca tagccagctg aaattttgtt ccgctcatag cgcagggtcc
     1981 ggtcatatcc ccccgtcaga ctccccagtt gcccatcccg gttatcataa cgctgccggg
     2041 tggtatccat atcaaaccag agcacatcct gctccgacgc cttccagtca agacgtgcac
     2101 caagattata attctgtgac tccgtgggat aaggaatacg cgtggctgct gtatcgctca
     2161 gtgatgtgac cgatgagccc tgacgctgtt gtgtgctacc gcgtacctgc aggctgacag
     2221 aatcatccac aagggggcca ctgctccaga aattaaactg gctgctgtta ccccatttgt
     2281 tgctttcctg cagattcagc cctgcattga cggaagagag ccatttgtct gcattctttc
     2341 tggtaatgat attcaccaca ccgcccatcg catcagagcc atacagtgtg gacatcggcc
     2401 ccctgataac ctcaatacgc tcaatggcgg ccagaggggg catgaacccg gtattcatgg
     2461 cagaaaaacc gttgggagtc acgtcactgc ttccgccctg acgaacacca tcaatcagta
     2521 tcagcgtgta actggctggc attcctcgga tgctgatttc cagcccaccg gttttacccg
     2581 taccactttc aacatccaca ccctctactg atctcagagc ctccgccaga tcgtggtact
     2641 ggctggactg caattcctcc tggctaatca cagaaacact ggcggctgcg ttagtcagct
     2701 ttttctcata gccggatgcc gagacaatca tcacatcctc tgcagcagct atgctgctgg
     2761 ctgaaaatcc gagacaggga atgactacgg aagccagagt ggttattcgc atattactaa
     2821 tctccgatca tgttaaccgg caagacaata cacaaataca aacaataatg agaataattt
     2881 atatttgcct tttacaaaaa ataaagatta ttaacaaaac taaatataaa taacaactgc
     2941 ctcggcatgc cagttaacag ctatccgtat ggcgtgttcg gttttgcgaa taaaaaatgg
     3001 ttactgtaga agcggatttc caccacatgt caaccatgaa tggtcagtgg tgcgagacga
     3061 ctgggatgat ttggtcgatg acttcttccg gtgaatactg atagaaacat tgaaatattg
     3121 taagagaaag cgttcaaaat tctgtggcac gtgaaaaatt ctacagcgtc at
//
LOCUS       DAJVUP010000263         3167 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.270, whole genome shotgun sequence.
ACCESSION   DAJVUP010000263 DAJVUP010000000
VERSION     DAJVUP010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3167)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3167)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3167
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.270"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(296..991)
                     /locus_tag="OQQ75_004152"
     CDS             complement(296..991)
                     /locus_tag="OQQ75_004152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HCS1978276.1"
                     /translation="MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQ
                     QRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISER
                     LQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLP
                     ESSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVH
                     GPVKAVYLIIEDC"
     gene            complement(984..2411)
                     /locus_tag="OQQ75_004153"
     CDS             complement(984..2411)
                     /locus_tag="OQQ75_004153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HCS1978277.1"
                     /translation="MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDE
                     LGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVWFAKNKEDATRYILQVAQ
                     RKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHK
                     DRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCL
                     VTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTG
                     PREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYG
                     SIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDSVCPVRIPLSKLILRHRRVMAEK
                     GITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEAR
                     DLPEADGESFRSWFKKHQAQEKKNG"
     gene            complement(2422..3141)
                     /locus_tag="OQQ75_004154"
     CDS             complement(2422..3141)
                     /locus_tag="OQQ75_004154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HCS1978278.1"
                     /translation="MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQ
                     PAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAE
                     KVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGL
                     ELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVGHLMEVRPEYLIGADVSCLLNISG
                     RLQREGQKVKVMHIAEVLMSR"
BASE COUNT          780 a          894 c          685 g          808 t
ORIGIN      
        1 tttgccttgt caaaaaaatg gtagatgaat accaacaaaa ctctgggcag taataaacaa
       61 cattctgata gagagtgcct gtataaagct gaagtgacaa tgaccgggaa gggaacccgt
      121 tttcaggaat ggatgcctgt ctttttcact gtaaatatcc tggcattact aatgccagga
      181 tatttacaga agagcagcat aaccatgacg gaacggggtt aagtcaggtt gtccttaacg
      241 ctattttcaa cctcgtatgc cttcttcagg tttatgttca gatctcatat ctctctcagc
      301 aatcctcaat aatcagatac accgctttca ccgggccatg aaccccgacg actttgataa
      361 gctcaatatc cgccgttgaa ctagggccgc taatgatgtt aatgcaggac ggcattcgtt
      421 caccggcctg cgctttctga tgcaattttt ctgcgagttg cgctacacgc ggcaggattg
      481 tgcttttacg caggataaaa agagaagatt ccgggagcag gctcaatgaa cgcccgcgct
      541 cggcggcgga aaaaagaacc acgcctcccg attcggttaa accatattca gcatacacaa
      601 cacccacttt agcctgctct gcctgcgaga tattctcggc acctttcgcc ggatcccaaa
      661 caacggcatt gcattcctgc tgcaaacgtt cactaatccc caattcctcc agcctcgtgt
      721 caccgctaat cacgaccgac tgatctccca gctctttaca cagacgtatt gcagcttctg
      781 ccgccttcgc ctcgctggtc agctcacagc gcgtcaacat aacatcgctg gcaaactgaa
      841 taaacgcgtc acagcgctgc tgttggttaa gttgggtaag ccgctcgtta gcatagttgt
      901 taagcggcgc atcttctgct tgcggttcaa gtcgcagcgg gcgacccagt gcctgagcaa
      961 cgttattcaa aaattcgcct cgattatcca ttctttttct cctgcgcctg atgtttctta
     1021 aaccaactac ggaaactctc tccgtcagct tcaggaagat cgcgtgcttc catccagtcg
     1081 ctaatcgcgc caaatttgag tggtgttttg ccgccattga taaaccagct tgccgcatga
     1141 gcgccggcca tcatcccgac tttccacaat cctggatgac tattggcata agcgaacatt
     1201 tttatcgccc gttgctctgc ttttgcggtg atcccttttt cagccatcac ccgacgatga
     1261 cgcaaaatca gttttgacag cggaatacgc accggacaca cgctgtcaca agcagtgcat
     1321 aaagagcagg cgtagggtaa atctttaaaa tctttatagc cgccaagtag cggagaaatc
     1381 accgcaccaa ttggccctgg ataaatagag ccatatccat gaccgccaat atggcgatat
     1441 gccggacaag tattcataca agccccgcag cgaatacagc gcagcacatc ccgaaattca
     1501 gaggccagca cctcagaacg cccgttatcg acaataacca gatgaaactc ttcaggacca
     1561 tcaacgtgcc ccgcttcgcg cggtcctgtc agccaggtgt tgtatcccgt caaacgtgca
     1621 ccaacggcac tgcgcgccag catggtgatc aatacatcta cctcggcaaa cgtgggggca
     1681 atacgctcca ttcccatcac tgcaatatgc gttttaggca gcgtggtaca cattcgcgca
     1741 ttaccttcat tggtcaccag gcataccgaa cctgtctctg ccaccgcgaa attacagccg
     1801 gtaataccta tttcagcact gaggaaatct tcgcggattt tttgccggat gaataaggtc
     1861 atcgcttcag gcgtttccgg cccctcatag cccagacgtt cgtgtagcac tcgacggatc
     1921 tgatggcgat ctttatgaat tgccgggacc acaacatgag atggcggatc ttgatccagc
     1981 tggagaatat attcacccag atcggtttca atcacctgaa tgccagcatc ctgcaacaca
     2041 tgattgacac caatctcttc ggtcaccatc gatttagatt tcaccacctt ccgggcattt
     2101 ttgcgttggg caacctgtaa aatgtagcgg gtagcgtctt ctttgttttt tgcaaaccag
     2161 acgtgaccgc cgttttgcgt cactttttct gagagctggt acagataagc gtcgagatta
     2221 ctcagaacat gatcacgtat ctgggcggcc cgatcgcgcc actcctccca gtgccccaat
     2281 tcatcgacca ttttttgccg atttgcccca atacgctgct gcgcgtttgc caccgctttg
     2341 cgcatgatcg gatcttcaat ttgctgacgg atgcgagtct taaaatctgt attactggtt
     2401 ttgatcgaca tctttatatc ctcagcggct catcaacact tcagcaatat gcatcacttt
     2461 gactttctgc ccttcccgtt gtaatcgccc actgatgttc agcaggcaac tcacgtcagc
     2521 accaattaaa tactcagggc ggacttccat caggtgccca accttttctt tcaccatctc
     2581 gccggatatt tcggccattt tgaccgagaa cgtgccgcca aatccgcagc aggtatcctg
     2641 ttcagcaaag gtcaacagct ccagtccacg cacatttttc agcagcgtaa gtggctcgtc
     2701 cttcactccc agcttacggg ccaggctaca agatgggtga tacacagctc tcccttgcaa
     2761 actggcacct acatcgacta cccctaattt attaacaata aaagaggtga gatcctgcat
     2821 acgcgcggca accttttcgg cacgtgatgc ccattcaggt tcatccgcca gatacgtcgg
     2881 gtaacttttt acggcatagg tgcaagagcc agccggtgaa ataatgggat cgtcgttatc
     2941 ctccagtgcg gcgatcagat ttttcatccc tggaatcgct tctttgatat aaccgctatt
     3001 gatcgcaggc tgaccgcagc atccctgttt ctccgggaaa tttacgcgac agccgagttt
     3061 ttccagtagc agcacggagt ctcgtgccat tcttgatttc agggcgtcac caatacaggt
     3121 gacaaagaaa ttgacattca caactaatac tccattactt catgccc
//
LOCUS       DAJVUP010000264         3097 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.271, whole genome shotgun sequence.
ACCESSION   DAJVUP010000264 DAJVUP010000000
VERSION     DAJVUP010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.271"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..923)
                     /gene="curA"
                     /locus_tag="OQQ75_004155"
     CDS             complement(<1..923)
                     /gene="curA"
                     /locus_tag="OQQ75_004155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415966.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent curcumin/dihydrocurcumin
                     reductase"
                     /protein_id="HCS1978279.1"
                     /translation="MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLR
                     TVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSHVVESNHPDYQPGDWVLGYSGW
                     QDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
                     PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKG
                     IDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKR
                     IRLQGFIIAQDYGHRIHEFQKEMGQWVKEDK"
     gene            1104..1622
                     /gene="mddA"
                     /locus_tag="OQQ75_004156"
     CDS             1104..1622
                     /gene="mddA"
                     /locus_tag="OQQ75_004156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine sulfoximine/L-methionine sulfone
                     acetyltransferase"
                     /protein_id="HCS1978280.1"
                     /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE
                     ARTIAGYPVLVSEEDGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS
                     RLIDEARDSGKHVMVAGIESQNQASLHLHHSLGFVVTAQMPQVGTKFGRWLDLTFMQL
                     QLDERTEPDAIG"
     gene            1619..2068
                     /locus_tag="OQQ75_004157"
     CDS             1619..2068
                     /locus_tag="OQQ75_004157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1978281.1"
                     /translation="MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLV
                     GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV
                     LVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF"
     gene            complement(2069..2302)
                     /locus_tag="OQQ75_004158"
     CDS             complement(2069..2302)
                     /locus_tag="OQQ75_004158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcY family protein"
                     /protein_id="HCS1978282.1"
                     /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ
                     QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL"
     gene            complement(2388..2561)
                     /gene="ortT"
                     /locus_tag="OQQ75_004159"
     CDS             complement(2388..2561)
                     /gene="ortT"
                     /locus_tag="OQQ75_004159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orphan toxin OrtT"
                     /protein_id="HCS1978283.1"
                     /translation="MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATW
                     PMSFPVALLFSLF"
     gene            2756..2851
                     /gene="yncL"
                     /locus_tag="OQQ75_004160"
     CDS             2756..2851
                     /gene="yncL"
                     /locus_tag="OQQ75_004160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response membrane protein YncL"
                     /protein_id="HCS1978284.1"
                     /translation="MNVSSRTVVLINVFAAVGLFTLISMRFGWFI"
BASE COUNT          752 a          792 c          723 g          830 t
ORIGIN      
        1 attttatcct ctttcaccca ttgccccatc tccttctgaa actcatggat gcggtgacca
       61 taatcctgag cgataataaa cccttgcaag cgaatacgtt ttttcagcac cgttgccatc
      121 aacaggggta aacgatccgg accgggtggt agctctgtag cgttatagct gctcactaag
      181 ccacaaacgg gaatgcgcgc agatgtatta agtaatggta gcactgcatc aaatacctta
      241 ccgcccacgt tttcataata gatatcaata ccttttgggc acgctttcac cagttgttcg
      301 gcaaaatcac ccgcgtggtg atcaagacaa acatcgaagc ccagcacctc gatagcatgg
      361 cggcattttt ccgcgccacc ggcccccccc accaccctgc aacctttaag tttgccgatt
      421 tgccccaccg ttgctcccac aggacctgtc gccgcagcta ccaccaacgt ttcgccctct
      481 ttaggctgac cgatatccag cagccccata taagcggtaa agcctggcat ccccagcaca
      541 cccagcgacc acgatggatt ttgcggatga tcgccaagtt tcaccagatc atcaccactg
      601 gatatgtcat agtcctgcca tccactgtag cccagcaccc agtcgccagg ctgataatca
      661 ggatgattcg actccacaac atggctcacc gtgccgccga ccatcacgcc gccaatatca
      721 acaggcggtg aataagatgg ctcatcgctc atacgtccac gcatatacgg gtccagggac
      781 aaataaactg tgcgcagtaa cacctgtcct tcacccggtg tggcgacatc atcttcttca
      841 agacggaaat tctccggaac cggtgcgcca tgtggacgcg aggccagaac ccaacgtcga
      901 ttacgctgct tttgttgccc cataatgctc tcctgtgctt ttggcatgaa tccatcaata
      961 gtagcaggct cacgggattg gttttgtttg cagccgtcac atcccctctg caacacgcaa
     1021 taatttcatc gaggaatccg ttgcttcggg ctgttttcga tagtattgat aacatcatca
     1081 tcattatttt atcgaggcca gacatgtcca tccgttttgc ccgcaaagcc gattgtgctg
     1141 ccattgcgga aatttataac cacgccgtgt tgtatacggc ggctatctgg aatgaccaaa
     1201 cggttgatgc agataaccgc attgcctggt ttgaagcgcg gaccatagca ggttatccgg
     1261 tgctggtaag tgaagaagat ggcgtagtga cgggatatgc ctcgtttggc gactggcgta
     1321 gtttcgatgg ttttcgccat accgtggaac attcggttta tgtccatccc gatcatcagg
     1381 gcaaaggtct ggggcgtaaa ttgttaagcc gattgattga tgaagcgcgg gatagcggga
     1441 agcatgtcat ggtcgccggg atcgaatcgc aaaatcaggc ctcgctgcat ctgcaccatt
     1501 cgctgggatt tgtcgtcacc gcacaaatgc cgcaggtggg cactaaattt gggcgctggc
     1561 tggatctgac atttatgcag ttgcaactcg acgaacgcac tgaaccggac gcgattggat
     1621 gaatcagtcg ctcacccttg cttttttgat tgccgccgga attggtctgg tagtccagaa
     1681 cacgctgatg gtgcgcatca cccagacctc ctctaccatt ctcatcgcca tgttgctgaa
     1741 ctcactggtg gggattgtgc tctttgtttc tattttatgg tttaaacaag gcatggcggg
     1801 gtttggcgaa ctggtgtcca gcgtgcgctg gtggacactt atacccggct tgctgggatc
     1861 gttttttgtc ttcgccagta tcagcggata tcagaatgtg ggagcggcga caactattgc
     1921 agtactggtc gccagccagc taattggcgg tctgatgctg gatatcttcc gcagtcatgg
     1981 cgtaccacta cgggcgttgt tcggcccaat ttgtggcgca attttacttg tggttggcgc
     2041 ctggttggta gccagacgct cattttaatc agaggatggt gccgcctttg gttaactgtt
     2101 cgtggcgcgc ttccatatct tctttatgct tgcgaccgtg atgagcaata gcggtgcgca
     2161 aacgctgctg ctgggtgtag cgatcttccc gacttaactc cgcgtcatcg ctcagggcga
     2221 ttaataattc gttcatatgg gcaatgacgc tctcttcaat cgcggcatcc acgcgcgcga
     2281 tgacttcatc cagatgcgac atactttctc cttaaccact tgtgaaattt atcgattcat
     2341 ccaaatgata taagtctgcg tggtgccgtc aagccagtga gtaagattta aaacagtgaa
     2401 aacaacagcg ccaccgggaa actcatcggc catgttgccc ccaccagaaa ggcgcttaag
     2461 aaacggatgc gtttcttatc gtgagaaaga aaccaggtga taagaaatgc gattgctgcc
     2521 ataaccgcat aaaaaacaag catatgttga tagagagaca tgtacgggcg tccagccaga
     2581 tgaataaaac gcgcgcaaat atgcgtcatt ttttgacgtg catcaagttt tttcaccagt
     2641 ttgagaaaaa atcatcaaac agcaacttgc ccttatccat cttcagaatg agtattattg
     2701 cggattttct taacccgtac tatacacata ggggcaatga taaaaggtgg caaaaatgaa
     2761 tgtttccagt agaactgtag tactgataaa tgtctttgct gctgttggtt tgtttactct
     2821 tatctctatg agatttggct ggtttatttg atgtagtgat tttgcacgca gcacgtactg
     2881 tcagagaaat caactctctg acagtacgca agatcttctc atactctcca ggtttacaac
     2941 attatcctta atatttactt ctttttgctg gcatctacat tgaaatgagt agaaaacatc
     3001 cccctactgt cgtctataca aacagcttac tgattcaaac ggaatcttgt tttcacattt
     3061 ttctatcatg aatactttat acgcgcggga gtctata
//
LOCUS       DAJVUP010000265         3078 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.272, whole genome shotgun sequence.
ACCESSION   DAJVUP010000265 DAJVUP010000000
VERSION     DAJVUP010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.272"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1999)
                     /gene="metG"
                     /locus_tag="OQQ75_004161"
     CDS             complement(<1..1999)
                     /gene="metG"
                     /locus_tag="OQQ75_004161"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HCS1978285.1"
                     /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH
                     EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE
                     NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE
                     VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSDALQEQVANK
                     MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV
                     SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKM
                     SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN
                     LASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALAD
                     LANRYVDEQAPWVVAKQESRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN
                     TELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKEEVKAAAAPVTGPLADDP
                     IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ
                     ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSP"
     gene            2131..>3078
                     /gene="apbC"
                     /locus_tag="OQQ75_004162"
     CDS             2131..>3078
                     /gene="apbC"
                     /locus_tag="OQQ75_004162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HCS1978286.1"
                     /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW
                     MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG
                     INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ
                     RPTSPDGTHMAPIMSHCLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY
                     LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE
                     NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLH"
BASE COUNT          737 a          787 c          825 g          729 t
ORIGIN      
        1 ccgggcttag caggaaaata tctttcccgc caggaccggc agccatcacc atgccttcag
       61 agataccgaa gcgcatttta cgtggtgcta ggttagccac cataatggtg tgacgaccaa
      121 tcagtgcctg cggatccggg taagcagaac gaataccgga gaagacattg cgtttttcac
      181 cgccgagatc cagcgtcagg cgcagcagtt tgtcagaacc ttcaacaaac tctgcgtttt
      241 caatcagcgc cacgcgcagg tcaactttag cgaagtcgtc aaaggtgatg gtttcctgaa
      301 tcggatcatc tgccagcggg ccagttaccg gcgcggcagc ggcttttact tcttctttag
      361 aggcttccac cagtgcttca acctgcctca tatcgatgcg gttatacagc gccttgaacg
      421 gattcacttt gtggcccagc agcggttgct ggataccatc ccaggtcagt tccgtattga
      481 ggaatgcttc tgcacgctcg gtcagtttcg gcagtaccgg cttcaggtaa gtcatcagca
      541 cgcggaacag gttgatgccc attgagcaaa ttgcctgcag gtcggcatcg cggctttcct
      601 gtttcgccac cacccacgga gcctgttcat cgacatagcg gttagccaga tcagccagcg
      661 ccatgatttc gcgcacggct ttaccaaatt cacggctttc ccacgcttca ccaatcactt
      721 cagcggcatc agtgaaggtt ttgtacaact gcgggtcagc cagttcgctt gccagcacgc
      781 cgtcaaaacg cttgttgata aagcccgcat tacgggaggc caggttaacc actttgttaa
      841 cgatatcggc attcacacgc tgaacgaaat cttccaggtt gagatcgata tcatcgatgc
      901 gcgaagagag tttcgcagtg tagtagtaac gcaggctgtc tgcgtcaaaa tgattcagcc
      961 aggtgctggc tttaataaag gtgccgcgag acttggacat cttcgcgccg ttcaccgtca
     1021 catagccatg aacaaacagg ttggtcggct tgcggaagtt gctgccttcc agcatggcag
     1081 gccagaacag gctgtggaag taaacgatat ctttaccgat gaagtggtac agctcggcgg
     1141 tggagtcttt cttccagtat tcatcgaagc ttacgctgtc gccgcgcttg tcgcacagat
     1201 tcttgaaaga acccatgtag ccaatcggtg cgtccagcca gacgtagaaa tatttgcccg
     1261 gcgcgttcgg aatttcaaaa ccgaagtaag gtgcgtcgcg ggagatatcc cactgttgca
     1321 ggccagattc aaaccactcc tgcattttgt ttgccacctg ctcctgcaac gcatcgctgc
     1381 gggtccatgc ctgcaacatt tcgctgaaag agggcagatc aaagaagaag tgttcagaat
     1441 cacgcattac cggggtagcg ccagaaacca ccgatttcgg ctcgatcagt tcagtcgggc
     1501 tgtaggtcgc gccgcagact tcgcagttat cgccgtattg atccggggat ttacatttcg
     1561 ggcaggtgcc tttcacaaaa cggtccggca ggaacatgcc tttttccgga tcgtacagct
     1621 gagagatggt gcggttttta ataaaaccgt tttctttcag gcgagagtag ataagttctg
     1681 acaactggcg gttctcttcg ctgtgtgtcg agtgatagtt gtcatagctg atgttaaagc
     1741 ctgcgaaatc agtctgatgc tcctgactca tttcgccaat catctgctcc ggggtgatac
     1801 caagctgctg agctttcagc atgatcggtg taccgtgggc atcgtcggcg cagatgaagt
     1861 tgacctcgtg gccgcgcatt cgctggtaac ggacccagac atcagcctgg atgtgctcca
     1921 gcatatggcc gaggtggatt gagccgttag cgtacggcag tgcgcacgtc accagaattt
     1981 tcttcgcgac ttgagtcata gtaggcatta cttcttaata gtgaaaaggg gttagatagt
     2041 accaaatggg aaaatgttaa gtaagtactt ctctatattc ttcaggtaaa ctatcagctg
     2101 atggtttatc tatacaaaaa aggagtcggg atgaacgaac aatcccaggc caaatcacca
     2161 gaagccttgc gcgcaatggt cgccgggaca ctggccaatt ttcagcaccc aaccctgaag
     2221 cataacctca ccacgctgaa agcgttgcac catgtcgcct ggatggacga cacgttgcat
     2281 gtggaactgg ttatgccatt cgtctggcat agcgcgtttg aagagttaaa agagcaatgt
     2341 agcgccgaac tgctgcgtat caccggggcg aaagctatcg actggaaact gtcgcacaat
     2401 atcgccacct taaaacgcgt gaagaatcag ccgggtatta atggtgtgaa gaacatcatt
     2461 gcggtcagtt ccggtaaagg cggcgtgggt aaatcctcca cggcggtaaa cctggcgctg
     2521 gcactggcgg cggaaggggc gaaagtcggc attctggacg ccgatatcta cggcccatca
     2581 attcccacca tgctgggcgc agaaaatcag cgtccaactt cgccggacgg tacccatatg
     2641 gcaccgatta tgtctcattg cctggcaacc aattcaattg gttatctggt cactgacgac
     2701 aatgcgatgg tgtggcgtgg accgatggcg agcaaggcgt taatgcagat gttgcaggaa
     2761 accttgtggc cggatctcga ctatctggtg cttgatatgc cgccaggcac cggtgacatt
     2821 caattgacgc tggcgcaaaa cattccagta actggtgcag tcgtggtcac caccccgcag
     2881 gacatcgcgt tgatcgatgc gaaaaaaggc attgtgatgt tcgagaaagt cgaggttccg
     2941 gtgcttggta ttgtcgagaa catgagtgtg catatttgca gtaactgtgg tcaccatgaa
     3001 ccgattttcg gtaccggtgg tgcagagaaa ctggctgaaa aataccacac acagctgctg
     3061 gggcagatgc cgttacac
//
LOCUS       DAJVUP010000266         3034 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.273, whole genome shotgun sequence.
ACCESSION   DAJVUP010000266 DAJVUP010000000
VERSION     DAJVUP010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.273"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(168..482)
                     /gene="fliE"
                     /locus_tag="OQQ75_004163"
     CDS             complement(168..482)
                     /gene="fliE"
                     /locus_tag="OQQ75_004163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HCS1978287.1"
                     /translation="MSAIQGIEGVISQLQATAMSARAQDSLPQPTISFAGQLHAALDR
                     ISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSM
                     QV"
     gene            697..2355
                     /gene="fliF"
                     /locus_tag="OQQ75_004164"
     CDS             697..2355
                     /gene="fliF"
                     /locus_tag="OQQ75_004164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HCS1978288.1"
                     /translation="MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAK
                     APDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL
                     PKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS
                     LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLT
                     LSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTE
                     EQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNN
                     RQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK
                     PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQ
                     LLAAGRWLLVLLVAWLLWRKAVRPQLTSRAEAMKAVQQQAQAREEVEDAVEVRLSKDE
                     QLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE"
     gene            2348..>3034
                     /gene="fliG"
                     /locus_tag="OQQ75_004165"
     CDS             2348..>3034
                     /gene="fliG"
                     /locus_tag="OQQ75_004165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HCS1978289.1"
                     /translation="MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANV
                     TQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRD
                     TASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLR
                     IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV
                     REFDGELAQKI"
BASE COUNT          768 a          801 c          831 g          634 t
ORIGIN      
        1 cttcctatga gcaaagcgaa gacaaaacat gttatcgcgt ttacggatcg tggatggcag
       61 aaaactttca ggatcaggta tccattttaa accagaaata gggtgagttt gtcccatcca
      121 tgccccacgc gggcagatgg gatgtaatta ccaacaggtt acaaaaccta cacctgcatg
      181 gacatcactt cctgatacgc cgccaccagc ttattacgca cctgaatccc catttgcata
      241 gaaactgagg ctttttgcat atcggtcatc acatcgttta acgccacgcc gggttcaccg
      301 agggtgaatt tttctgcctg cgtgcgggcg gctgtttgtg tatcgcttat gcgatcgagc
      361 gcggcgtgca gctgcccggc aaaactaatg gtcggttgcg gcagtgaatc ctgcgcacgc
      421 gcactcatcg ccgtagcctg taactggctg ataacccctt caatcccctg tatcgctgac
      481 attttcgtct cctggataat ttctggtagc aaagcctacc agtaagtcaa taagacaaag
      541 gcgctaaata gcaacaaaaa aacgggttta ttggcggata gaaaaaaacg aaagcacaaa
      601 taatggcagc gtcaattttt cgagtttgct gacccgggag tgagtcttgt tccactttgc
      661 caataacgcc gtccataatc agccacgagg tgcgcgatga atgcgactgc agcccagaca
      721 aaatctcttg agtggcttaa tcgcctgcgt gcgaatccga aaattccatt gattgttgcc
      781 ggttccgcgg cagtggcggt catggtcgca ctgatcctgt gggcgaaagc ccccgactac
      841 cgcacattat tcagcaatct ttccgatcag gatggtggcg caattgtcag ccaactgacg
      901 caaatgaata ttccttaccg cttcagcgaa gccagcggcg ctattgaagt tccggcagat
      961 aaagttcacg agctgcgtct gcgcctggcg caacaaggtt tgcccaaagg cggcgcggtc
     1021 ggtttcgaac tactcgatca ggaaaagttt ggtatcagcc agttcagcga acaggtgaat
     1081 tatcagcggg cgctggaagg cgagctttct cgtaccatcg aaactatcgg cccggtaaaa
     1141 ggggcgcgcg tacatctggc aatgccgaaa ccgtctttat tcgtccgtga acaaaaatcc
     1201 ccttctgcat cggtgacggt aaatctatta cccggccgcg cactcgatga agggcaaatt
     1261 agcgccattg tacatctggt ttccagcgcg gttgctggtc tgccgccggg gaacgtcacg
     1321 ctggtggatc agggtggaca tctgttaacc ctgtccaata ccagcgggcg cgatcttaat
     1381 gacgctcagt tgaaatatgc cagcgatgtc gaaggccgga ttcagcggcg tattgaagcg
     1441 atcctgtcgc caattgttgg taacggtaat attcacgccc aggtcacggc gcaactggac
     1501 ttcgccagta aagaacaaac ggaagaacag tatcgcccta acggtgatga atctcatgcg
     1561 gcgcttcgtt cacgccagct taatgagagc gagcaaagcg gttccggtta tccgggcggc
     1621 gtaccggggg cgttgtcgaa tcaaccggca cctgcgaata acgcgccaat cagcacgcct
     1681 ccggcaaatc aaaataaccg ccagcagcag gcgagcacca ccagcaatag cgggccgcgt
     1741 agcacacagc ggaatgaaac cagtaactac gaagtcgatc gcaccattcg tcataccaaa
     1801 atgaacgtgg gcgatgtgca acgtctgtca gtcgcggtag tggtaaatta caaaaccttg
     1861 ccagacggta aaccattgcc tctcagcaac gaacagatga agcaaattga agatctgacc
     1921 cgcgaggcga tgggcttttc tgaaaaacgc ggtgactcgc tcaatgtcgt taactcgccg
     1981 ttcaatagca gtgacgaaag cggcggagaa ctgccgttct ggcaacagca agcgtttatc
     2041 gatcagttgc tggctgccgg tcgctggttg ctggtactgc tggtggcgtg gctgctgtgg
     2101 cggaaagcgg tacgcccgca gttaacaagt cgcgccgagg cgatgaaagc tgtacagcaa
     2161 caggcgcagg cccgtgagga agtggaagat gcggtggaag tccgcctgag caaagacgaa
     2221 caactccaac aacgacgcgc taaccaacgt ctgggggcag aagtcatgag ccagcgtatc
     2281 cgtgaaatgt ctgataacga tccgcgcgtg gtggcgctgg tcattcgcca gtggataaat
     2341 aacgatcatg agtaacctga caggcaccga taaaagcgtc atcctgctga tgaccattgg
     2401 cgaagaccgg gcggcagagg tgttcaagca cctctcccag cgcgaagtgc aaaccctgag
     2461 cgctgcaatg gcgaacgtca cgcagatctc caacaagcag ctaaccgatg tgctggcgga
     2521 gtttgagcaa gaagctgaac agtttgccgc actgaatatc aacgccaacg attatctgcg
     2581 ttcggtattg gtcaaagctc tgggtgagga acgtgccgcc agcctgctgg aagatattct
     2641 cgaaactcgc gataccgcca gcggtattga aacgctcaac tttatggagc cgcagagtgc
     2701 cgccgatctg attcgcgatg agcatccgca aattatcgcc accattctgg tgcatctgaa
     2761 gcgcgcccag gccgccgata ttctggcgtt gttcgatgaa cgtctgcgcc acgacgtgat
     2821 gttgcgtatc gccacctttg gcggcgtgca gccagccgcg ctggcggaac tgaccgaagt
     2881 actgaatggc ttgctcgacg gtcagaatct caagcgcagc aaaatgggcg gcgtgagaac
     2941 ggcagccgaa attatcaacc tgatgaaaac tcagcaggaa gaagccgtta ttaccgccgt
     3001 gcgtgaattc gacggcgagc tggcgcagaa aatc
//
LOCUS       DAJVUP010000267         3000 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.274, whole genome shotgun sequence.
ACCESSION   DAJVUP010000267 DAJVUP010000000
VERSION     DAJVUP010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.274"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            278..538
                     /gene="repA"
                     /locus_tag="OQQ75_004166"
     CDS             278..538
                     /gene="repA"
                     /locus_tag="OQQ75_004166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication regulatory protein RepA"
                     /protein_id="HCS1978290.1"
                     /translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
                     KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
     gene            762..836
                     /gene="tap"
                     /locus_tag="OQQ75_004167"
     CDS             762..836
                     /gene="tap"
                     /locus_tag="OQQ75_004167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001370046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA leader peptide Tap"
                     /protein_id="HCS1978291.1"
                     /translation="MPGKVQDFFLCSLLLRIVSAGWCD"
     gene            829..1686
                     /gene="repA"
                     /locus_tag="OQQ75_004168"
     CDS             829..1686
                     /gene="repA"
                     /locus_tag="OQQ75_004168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="incFII family plasmid replication initiator
                     RepA"
                     /protein_id="HCS1978292.1"
                     /translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
                     FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
                     LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
                     SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
                     RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
                     YSRLATASP"
     gene            complement(2739..>3000)
                     /locus_tag="OQQ75_004169"
     CDS             complement(2739..>3000)
                     /locus_tag="OQQ75_004169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000484486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HCS1978293.1"
                     /translation="QAAAFLGVVPVEKYSGTSVRGCPKLSKIGPPEIRAKLYLASLCG
                     LRFNPLMKAMYERLCLRGKAKMCAIGALMRKLVHWCYGVLKT"
BASE COUNT          783 a          817 c          724 g          676 t
ORIGIN      
        1 caggggctga tcagcagtca ccggaacatc gtagctgacg ccttcacgtt gctcagttgt
       61 ccaaccccgg aaacgggaaa aagcaagttt tcctcgctcc cggcgtttcc ataactgaaa
      121 accatactat ttcacagttt aaatcacatt aaacgacagt aatccccgtt gatttgtgcg
      181 ccaacacaga tcttcgccac aattctcaag tcgctgattt caaaaaactg tagtatcctc
      241 tgcgaaacga tccctgtttg agtattgagg aggcgagatg tcgcagacag aaaatgcagt
      301 gacttcctca ttgagtcaaa agcggtttgt gcgcagaggt aagcctatga ctgactctga
      361 gaaacaaatg gccgctgttg caagaaaacg tcttacacac aaagagataa aagtttttgt
      421 caaaaatcct ctgaaagatc tcatggttga gtactgcgag agagagggga taacacaggc
      481 tcagttcgtt gagaaaatca tcaaagatga actgcagaga ctggatatac taaagtaaag
      541 actttacttt gtggcgtagc atgctagatt actgatcgtt taaggaattt tatggctggc
      601 cacgccataa ggtggcaggg aactggttct gatgtagatg tacaggagcc agaaaagcaa
      661 aaaccccgat aatcttcttt aactttggcg agtcagaaag attaccgggg cccacttaaa
      721 ccgtatagcc aacaatcaag ctatgcgggg agtatagtta tatgcccgga aaagttcaag
      781 acttctttct gtgctcgctc cttctgcgca ttgtaagtgc aggatggtgt gactgatctt
      841 caacaaactt attaccgcca ggtaaagaac ccgaatccgg tgttcacacc ccgtgaaggt
      901 gcccggacgc ttccgttctg cgggaaactg atggaaaagg cggtgggctt cacctcccgt
      961 tttgatttcg ccattcatgt ggcacatgcc cgttcgcttg gtctgcgtcg gcgcatgcca
     1021 ccggtactac gtcgccgggc cattgatgcg ctgctgcagg ggctgtgttt tcactatgac
     1081 ccactggcca accgcgtcca gtgttccatc accacgctgg ccattgagtg cggactggcg
     1141 acggagtctg ctgccggaaa actctccatc acccgggcca cccgggccct gacgttcctt
     1201 gcagagctgg gactgattac ctaccagacg gaatatgacc cgcttatcgg gtgctacatt
     1261 ccgaccgata tcacgttcac atctgcactg tttgctgccc tcgatgtatc agaggaggca
     1321 gtggccgccg cgcgccgcag tcgtgtggaa tgggaaaaca gacagcgcaa aaagcagggg
     1381 ctggataccc tgggtatgga tgaactgatg gcgaaagcct ggcgttttgt tcgtgagcgt
     1441 ttccgcagtt accagacaga gcttaagtcc cgtggaatga agcgtgcccg tgcgcgtcgt
     1501 gatgcggaca ggcagcgtca ggatattgtc accctggtga aacggcaact gacgcgtgaa
     1561 atctcggaag ggcgcttcac tgccagtcgt gaggcggtaa aacgtgaagt ggagcgtcgt
     1621 gtgaaggagc gcatgattct gtcacgtaac cgtaattaca gccggctggc cacagcttcc
     1681 ccctgaaagt gacctcctca gaataatccg gcacgcgccg gaggcattcg cacgcctgaa
     1741 gcccgccagt gcacaaaaaa tcagcgctac atacaaaaaa caacctcatc atccaccttc
     1801 tggtgcatcc ggtcccccct gtttttgata caaaacacgc ctcacagacg gggaattttg
     1861 cttatccaca ttaaactgca agggacttca ccataaggtt acaaccgttc acgtcataaa
     1921 gcgccagccg tcagccctac agggtgcaat gtatctttta aacacctgtt tatatctcct
     1981 ttaaactact taattacatt catttaaaaa gaaaacctgt tcactgcctg tcctgtggac
     2041 agacagatat gcacctccca ccacaagcgg cgggccccga ccgaagccgg tttagttaca
     2101 acatgcaaac ataaacccct aaaaaaccca agtccgacgc agaactgaaa ccacaaagcc
     2161 cctccctcat aactgaaaag cggccccgcc ccggcccgaa gggccggaac agagtcgctt
     2221 ttaattatga atgttgtaac tatattatca tcgctgtcag tcctctggct ggacgtatcg
     2281 agtacacgct cgtaagcggc cctcacggcc ctcacggccc gctaacgcgg agatacgccc
     2341 cgactgcggg taaacccttg tcgggctccg accgcgcaca gaagctctgt catagctgaa
     2401 aacgggtatg gcttggcagc taccatgttc tgtcaagaaa aatcgcttga actccgacgt
     2461 acagccccct aagtactgcc agcaagctgt cagcactaag tccccgatac agcgcggcat
     2521 agccgcgcta acggggttaa aagggcttac ctatacttca tcatcgctga aagcccgcat
     2581 ggcctcgcag ggcagagatg ggataggtga aacctatcaa tacgtaccgg cttacgccgg
     2641 gcttcggcgg tgttactcct gtaccatatg taactacatc atgccgcctt acatgcgcta
     2701 cgcgcatatg aagacaaata gcccacatca aacggttttt aggtcttcag tacgccatag
     2761 caccagtgca cgagttttct catcagcgca ccaatggcac acattttggc cttacctctc
     2821 aggcataatc gctcatacat cgctttcatc aatgggttaa atctcagacc acacaacgaa
     2881 gccagataca gtttcgcccg gatttccggc ggaccaattt ttgacagttt cggacaccct
     2941 ctgaccgagg tgccggaata tttttcaacg ggaacgacac ctaaaaatgc agccgcctgt
//
LOCUS       DAJVUP010000268         2974 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.275, whole genome shotgun sequence.
ACCESSION   DAJVUP010000268 DAJVUP010000000
VERSION     DAJVUP010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2974
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.275"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            199..939
                     /locus_tag="OQQ75_004170"
     CDS             199..939
                     /locus_tag="OQQ75_004170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HCS1978294.1"
                     /translation="MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPV
                     YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ
                     LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG
                     ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVN
                     GRYVVSKPLSHEVVQPQLASNYTLPEAK"
     gene            complement(910..1677)
                     /locus_tag="OQQ75_004171"
     CDS             complement(910..1677)
                     /locus_tag="OQQ75_004171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HCS1978295.1"
                     /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
                     GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN
                     WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA
                     SLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT
                     PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV"
     gene            complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="OQQ75_004172"
     CDS             complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="OQQ75_004172"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HCS1978296.1"
                     /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
                     GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS
                     RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
                     RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
     gene            2701..>2974
                     /gene="fadE"
                     /locus_tag="OQQ75_004173"
     CDS             2701..>2974
                     /gene="fadE"
                     /locus_tag="OQQ75_004173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="functions in fatty acid oxidation; converts
                     acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS1978297.1"
                     /translation="MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWS
                     AWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAI"
BASE COUNT          716 a          749 c          750 g          759 t
ORIGIN      
        1 atcttaggaa ataaatgata catgcgcttt tcggactatt gaaaactgcc cctgtgctaa
       61 atttgtaaac cctgcgccga caggcttgcg taaaactctt ttggtgataa tgtgagcctt
      121 ccaaatccag actattccga tttgggatcc attttgccgt cctggcgtgt gtaaccgttt
      181 tatcaaggaa taagcagtat gcgtaaaatc gcattaattc ttgcgatgtt gttgatcccg
      241 tgcgtttcgt ttgccggttt gctgggcagc agtagctcga ccacgccagt gagcaaagag
      301 tataagcagc agttgatggg atcccctgtc tacatccaga tcttcaagga agaacgtacg
      361 ctcgatctct acgtcaaaat gggcgagcaa tatcagctgc tcgacagtta taaaatctgt
      421 aaatattccg gcggcttagg gccaaaacag cgtcagggcg atttcaaaag cccggaaggg
      481 ttttatagcg tccagcgtaa tcagttaaaa ccagacagcc gttactacaa agcgattaat
      541 attggtttcc ccaatgccta tgaccgtgcg catggttatg aagggaaata cctgatgatc
      601 cacggcgatt gtgtttccat cggctgctac gcaatgacca atcagggtat tgatgagatc
      661 ttccagttcg ttactggtgc gctggtgttt ggtcagccga gcgtgcaagt gagtatttac
      721 ccgttccgca tgaccgacgc caatatgaag cgccataaat attccaactt taaggacttc
      781 tgggagcaac tgaagccggg ttacgactac tttgagcaaa cccgtaagcc accgaccgtt
      841 tctgtggtca atggtcgtta cgtggtcagc aagccgttaa gccacgaagt tgtgcagcca
      901 caactggcat caaactacac gctccccgag gcaaaataag cgccattcgc ctggcataat
      961 cttttgccag gtttcattgc ccgtcagcgg ctgtgtcgca atcaccgtga ccacatcatt
     1021 cggtgtggtc tgcgagctga agtcgatttc tacatcctga tccagcagcg ttgccacgcc
     1081 aaacggtgcg cggcgggtga tccagtgcag attcgtcgag caatacgcca ttacatagcg
     1141 cccatccgaa agcagcatgt tgaaaacgcc cttctgccgc agttcgtccg ccagtgaagc
     1201 gatatattta aacactgctg ccatgttgcc cggcgtgcgc gggtaacgct gcgttaattt
     1261 atgcagcagc cagcagaagg ctttttcgct gtcggtttcg cctaccgggc ggaagttgcc
     1321 ggtttccagt gatttgtagc ccgtcagttg tccgttatgg gcataagtcc agttacgccc
     1381 ccataactcg cgggtaaatg ggtgagtatt ttccaacgcc acctcgcccc gattagcctg
     1441 gcgaatatga gccaccaccg aacaggattt tatcgggtag tcctggacaa gtttggcgat
     1501 gggggaatta aagctgggtt gtggatcttt aaatgtgcga cagcctttac cttcgtaaaa
     1561 ggtaatgccc cagccatctt tatgtggccc ggttccacca ccacgctgta caagtccggt
     1621 gaaactaaag cagatatcgg tagggacgtt ggcgctcatc ccgagcaatt cgcacatggg
     1681 taacctccac aacagcggga gcgcatggcc cccggcgaag attgatttaa gaattttcag
     1741 gtcggatgcg gcgtaaacga attattcggc ctacggttcg cgtacagatt tgtaggcatg
     1801 ataagacgcg tcagcatcgc atcaggcatc agcgcacaag tgccggatgc ggcgtaaacg
     1861 ccttatccgg cctacgccag acttacttaa ccatctcttt ttcaattaac tggatcagga
     1921 tatggatcac tttaatgtga atctcctgaa tgcggtcggc ataaccaaag tgcggtacgc
     1981 gaatttcgat atccgccgtg ccggccattt tgccgccgtc tttaccggtc agggtgatca
     2041 ctttcatccc cttctcacgc gccgctgcga tcgctttgat cacgtttgca gagttaccgg
     2101 aggtggagat ccccagcagt acatcgcctt cgcgacctac cgcttcaacg tagcgggaga
     2161 aaatatcatt gaaaccgaaa tcattaccga cgcaggaaat atgactaacg tcagaaatag
     2221 caatcgccgg gtagcccgga cggttttcac ggtagcgacc ggtcaactct tcggcaaagt
     2281 gcatagcgtc gcaatgggaa ccgccgttgc cgcaggaaag cactttgcca ccggctttaa
     2341 agctgtctgc taacaggacc gccgcgcgct gaatggcgtg aatattggcg tcatctttta
     2401 aaaagttagc cagcgtttcc gccgcttcgt tcagttcgtt acgaataaga tcttggtaca
     2461 tgaggatatc cttcagcata aatgtaatag acaaaatgca gtgtaccgga taccgccaaa
     2521 agcgagaagt acgggcaggt gctatgacca ggactttttg acctgaagtg cggataaaaa
     2581 cagcaacaat gtgagctttg ttgtaattat attgtaaata cattgctaaa tgtatttaca
     2641 tccactacaa ccatatcatc acaagtggtc agacctccta caagtaaggg gcttttcgtt
     2701 atgatgattt tgagtattct cgctacggtt gtcctgctcg gcgcgttgtt ctatcaccgc
     2761 gtgagcttat ttatcagcag tctgattttg ctcgcctgga cagccgccct cggcgttgct
     2821 ggtctgtggt cggcgtgggt actggtgcct ctggccatta tcctcgtgcc atttaacttt
     2881 gcgcctatgc gtaagtcgat gatttccgcg ccggtatttc gaggtttccg taaggtgatg
     2941 ccgccgatgt cgcgcactga gaaagaagcg attg
//
LOCUS       DAJVUP010000269         2942 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.276, whole genome shotgun sequence.
ACCESSION   DAJVUP010000269 DAJVUP010000000
VERSION     DAJVUP010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.276"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            577..1293
                     /locus_tag="OQQ75_004174"
     CDS             577..1293
                     /locus_tag="OQQ75_004174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978298.1"
                     /translation="MNDNSLLRNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
                     AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
                     VIFELLILKQYFILPLSLSCIISSLVISIIIRIYGRIFSVSCFSDIPFVREHRIKLIM
                     AGFLVYFWLFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
                     LIFNTEQSGFYEINDVYVRK"
     gene            1845..2249
                     /locus_tag="OQQ75_004175"
     CDS             1845..2249
                     /locus_tag="OQQ75_004175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978299.1"
                     /translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
                     YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTRAGCRVYGICGTTSTLHVAG
                     RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
     gene            2312..2942
                     /locus_tag="OQQ75_004176"
                     /pseudo
     CDS             2312..2942
                     /locus_tag="OQQ75_004176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          824 a          605 c          667 g          846 t
ORIGIN      
        1 ttgtgggcca taaatattcc aaaaaaatag cccgctccgt ttattaccgg aacgggcgag
       61 agcatgacat tgtctgtaat tataatgaga ctgctgattc tacttatttt taatttcaag
      121 aaaagcgttt tctacaaaga attatgagat ttaatgtttt gtttagacaa tattgtcatt
      181 ctgttcaata atgaaagtct tcatcaacaa caagtaaaaa caacgtccct ctcatcgaac
      241 cggacttgca gatttcccgc atccggctct cttgcaacac atcagacctt cacgttcggg
      301 cggttatggg gaaggtccag caagctgtat gagccctaac tgtttgaata ccagtagatt
      361 accagaaact tctatcgatt gaagacatta ccaactagcg ttactaaatg ttgaccaagt
      421 tttgttcact tgtctggttt tgatagtagc attctgcaga gtattttgat atgataaata
      481 tgcattaaca atgatattat tgttaatttc ctagcatgaa aattaaaaga tcaacttttt
      541 atctcgaata ttttttacat tatcagttgg tttcttatga atgacaattc attgcttaga
      601 aattcttcat tattcatcgc ctatatggga tgtgtagggt gggtcagtgc ttattcttat
      661 ggctggggaa cctcttttta ctatggattt ccatggtggg ttgttggtgc aggtttggat
      721 gatgttgcca gaagtttact ctatgctatc atagtaatgg gtatactttt taccggttgg
      781 gggattggta ttttattttt tcttcttata aagaaaagaa gtaaaataca agacttgagt
      841 ttttttagac tattttttgc tattacccta ctgtttttcc ctgtaatatt cgaactttta
      901 attctcaaac aatatttcat acttccatta tcactttcat gcattattag ttcattggtt
      961 atttcaataa taattcgcat atatggacgg atcttttctg tatcatgttt ttcagatatc
     1021 ccttttgtta gagaacaccg cattaagtta attatggctg gttttttggt ttatttttgg
     1081 cttttttcct ttcttgttgg ctggtataaa cctcaattaa aaaaagaata tcagatgctt
     1141 tgttataata atagttggta ttatgttctt gctcgttatg attcacggct cgttttgtct
     1201 agttcattta aagatgacag taacagattc ttaatattta atacagaaca gtcgggattt
     1261 tatgaaatca atgatgttta tgtcagaaag taataatcct ctcccacaaa gtgaattaaa
     1321 cgaatatata atgcgttcga agtatatgta ttgagctgtc atactgagaa acaaacctta
     1381 gggcagcaca attaaagcca gaaacaacta tgcaagaaag ttactaaata agtgctcgga
     1441 acagtaaaac actcaggggg gactcagtcc agattatgta atcagataaa ttgccaaaca
     1501 tcacaaatca ccagcaggac tgagtgatgc cgagcattgc accaataccc cgtgatgaac
     1561 gatgcctgat gcagaaagct ccctataaaa caaagaacaa aaactacgac cggcgattca
     1621 ccgtcatact gatgctgcat cgtggtgaca ctgtctgtca ctttcatgtt gactgaacaa
     1681 ctctgctgcg aagaaggtgt accgccggcg ggatttgatt gtccggcgtc tagcttccac
     1741 ttccctgatg gaactgaaag ttgttatggc cggtcagctt gccctgtccg caggacatga
     1801 ggtgctgtga cggacagcac cagtaacgga aagtgacaat aaaaatgaat actgcgctga
     1861 tagttgcact aatgtgtatg tggtatgcgg tacccgctgc tgcaaaagag actttactgg
     1921 ctatgccacg taattcaaca gaacattgct atgcggagat taatgtgcac ggaccatatg
     1981 gggtgtattt ccgagtggtc ccgcatcccc ccgggggaaa gagctgggtc gaatgtaaca
     2041 gtgactacta ttactctgat aaaccaccgg gagtacagat actcggaacc cgtgcagggt
     2101 gtcgggtata cggaatctgc gggaccacct cgacactgca tgtggctgga agaggggttg
     2161 tgtgtattaa aaatatatgc agtccacgtg ggatgataat tcacaggata cggaaacgtc
     2221 ctgtagtggc tgtaagcgat gagatgtgat cttatccagc aatagtggac acgcggctaa
     2281 gtgagtaaac tctcagtcag aggtgactca catgacaaaa acagtatcaa ccagcaaaaa
     2341 aacacgtaaa cagcattcgc ctgaattttg cagtgaagcc ctgaagcttg ctgaacgcat
     2401 cggtgttgct gccgcagccc gtgaactcag cctgtatgaa tctcagctct atgcgtggcg
     2461 cagcaaactg cagcaacaga tgacctcgtc tgagcgtgaa agtgaactgg ccgctgaaaa
     2521 tgcccgcctg aagcggcaac tggcggtgca ggcagaggaa ctggctatcc tccaaaaggc
     2581 cgcgacatac tttgcgaagc gcctgaaatg aagtatgtct ttattgaaaa acatcaggct
     2641 gagttcagca tcaaggcaat gtgccgcgcg ctccgggtgg cccgcagcgg ctggtatacg
     2701 tggtgtcagc ggcggacagg gataagccct cgtcagcagt tccgtcagca ctgcgacagc
     2761 gttgtcctcg cggcggcctt tacccggtca aaacagcgtt acggtgcacc acgcctgacg
     2821 gatgaactgc gtgctcaggg ttaccacttt aacgtaaaaa ccgtggcggc aagcctgcgc
     2881 cgtcaggggc tgagggcaaa ggcctcccgg aagttcagcc cggtcagtta ccgcgcacat
     2941 gg
//
LOCUS       DAJVUP010000270         2931 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.277, whole genome shotgun sequence.
ACCESSION   DAJVUP010000270 DAJVUP010000000
VERSION     DAJVUP010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.277"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(51..235)
                     /locus_tag="OQQ75_004177"
                     /pseudo
     CDS             complement(51..235)
                     /locus_tag="OQQ75_004177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311258.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
     gene            complement(397..471)
                     /locus_tag="OQQ75_004178"
     tRNA            complement(397..471)
                     /locus_tag="OQQ75_004178"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(436..438),aa:Arg,seq:cct)
     gene            complement(547..1479)
                     /locus_tag="OQQ75_004179"
     CDS             complement(547..1479)
                     /locus_tag="OQQ75_004179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HCS1978300.1"
                     /translation="MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHI
                     RQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGF
                     IIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLMRLWGVVLLGNILGTGIAAWAFEY
                     MPIFNEETHDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIIL
                     MTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS
                     HAQIRNDMSNKRKAEARQKAERAENIKKNDKNPA"
     gene            1773..2528
                     /gene="mlaA"
                     /locus_tag="OQQ75_004180"
     CDS             1773..2528
                     /gene="mlaA"
                     /locus_tag="OQQ75_004180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding lipoprotein MlaA"
                     /protein_id="HCS1978301.1"
                     /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF
                     NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR
                     FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD
                     DGGDMADGLYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF
                     QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE"
     gene            complement(2710..2922)
                     /locus_tag="OQQ75_004181"
     CDS             complement(2710..2922)
                     /locus_tag="OQQ75_004181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005092548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978302.1"
                     /translation="MDDAKFRRDNVKEIISTLFANKVDVDHPENKYKDFKDLEDKVEK
                     RLQNRQTEYQNEINQLSAPGVNFDDI"
BASE COUNT          733 a          675 c          690 g          833 t
ORIGIN      
        1 cccatctttt acggggtgaa ggtagatttc gtatgaaggg tatctgttgt ctcctgcaaa
       61 gtcataagcg gatattttcc tacggtcagt atttttttct taccgtcaat cttgtagcga
      121 agttgccata ccttttcccg gatacaggaa cataaaggta caggccatta ccatcgagaa
      181 ggcggtatgg tttttctttc ggctttgctg cttcaatctg cttaacggtg agcatgggta
      241 aaaatccggt gggtaaaatt attttatcca ctttttaccc gtcatggagt gcggctgtca
      301 acgatctgac gcgaaccatg acgaaccgtg aatatacgga aggcttgata ttcaggggat
      361 tttgcggact ggtacggatg ggagcgaact gataaatggt gtcccctgca ggaatcgaac
      421 ctgcaattag cccttaggag gggctcgtta tatccattta actaagagga caatgcggca
      481 tgagtatacc cgctaatgga ctgcggagta agtacactgc cgctcgattg cttaaaccct
      541 cgccatttat gctgggtttt tatcattttt cttaatgttt tccgcacgtt ctgctttttg
      601 gcgtgcttct gctttgcgct tgttgctcat gtcgttacgg atctgtgcat gactcattaa
      661 cgcgaagata aaggtgccgc cgcagatatt ccccgctaaa gtaggtagtg cgaagggcca
      721 aatgaaatcg ctccagtgca gcgtgccgtt aaacaccaga tagaggattt ctacagaacc
      781 gacaacgatg tgggtggtgt cacccagtgc aataagccag gtcatcaata taatcaccac
      841 aatctttgcc gcacccgctg caggaaacat ccaaaccata gtggcgatca gccagccgga
      901 aatgatcgcg ttggcaaaca tctcgctggg ggtgttcttc atcacatcca tgccgatttt
      961 gacaaatgca tcgtgagttt cttcattgaa gataggcata tattcaaatg cccatgcagc
     1021 aatacctgtc ccgagaatat tacccagcag cacgacgccc cataatcgca taagtaagcc
     1081 gacgttgctc attgtcggtt tttgcatgac gggtagtacc gcagtcacgg tgttttcggt
     1141 aaataattgc tggcgggcca taatgacgat aataaaacca aaggtataac cgagattctc
     1201 caacaagaag ctgcccggca cgccttccag ttcgacatga aatatccctt ttgccagtaa
     1261 cgaagcgccc atcgacagac ccgccgcaat ggctgaccac agtagtgcca ttgcgtcgcg
     1321 ttccagctct ttttcaccat cctggcggat atgttcatga attgccatcg cccgggaggg
     1381 gagtcgatct tcatctattt ctattttttt gccgcgctct ttttcttcgc tctcaacttc
     1441 aatttcgtcg ctgtgttgat caattttgtc gttgtccatg gtctcttctc ttgaattagc
     1501 acgtatagct aaagcgtagc ggcttttttg ctcgcaactg gcgggagtta ctctgaaaat
     1561 gtagaaaagg ccgcgtttgc ctttttctgt ttctatagaa tcaagtagcc tacagggcgg
     1621 cgattaccag gctatgatca aatcagcaaa tcagggcgtc tggacatcag ttgacgtgct
     1681 gttacaatcg cccacaccta aacaggcgga tacggtatcg ttccgtcatg gatggcaaac
     1741 tgcataagcc ataaaaaaac agggagacat ttatgaagct tcgcctgtcg gcgcttgctc
     1801 tgggaactac gcttctggtg gggtgtgcga gttccggtac agatcagcaa gggcgttctg
     1861 acccgttaga agggttcaac cgcaccatgt acaacttcaa cttcaatgta ttagacccgt
     1921 atattgttcg accggtcgct gtcgcctggc gtgattatgt tccgcaaccg gcgcgtaacg
     1981 gtttgagcaa ctttaccggc aaccttgaag aacctgcggt gatggttaac tacttcttgc
     2041 agggcgaccc ttatcagggg atggtccact ttacccgctt tttcctgaac accattttgg
     2101 ggatgggcgg ctttattgat gttgcaggga tggcgaaccc gaaactgcaa cggactgaac
     2161 ctcaccgctt cggtagtacg cttggtcatt atggcgtggg ttatgggcct tacgttcagt
     2221 taccgttcta cggtagcttc acgctgcgtg atgacggtgg tgatatggcg gatggtcttt
     2281 acccggttct ttcctggctg acctggccga tgtctgtggg taaatggacg cttgaaggga
     2341 tcgaaacccg cgctcagctg ctggattccg atggtctgct gcgtcagtcg tccgatcctt
     2401 atattatggt gcgcgaagcg tacttccagc gtcatgattt catcgctaat ggcggcgaac
     2461 tcaaaccgca ggaaaatccg aacgcacaag cgattcagga tgatttaaaa gatattgatt
     2521 ctgaataaga aacaaataaa aaaggtgagt cgcaaaactc accttttttg ttgttatccc
     2581 tcaattacca caagtaaaag gagataaacc gacaatgacc cggacgtaat gatgtaaaaa
     2641 tactgatgtt cgtcactgac tatttccgat attcaggcgt tgaaaaatca aaaaactgga
     2701 aaaataattt taaatatcat caaaattaac acctggcgca gatagttgat taatttcatt
     2761 ttgatattcc gtctggcgat tttgaagcct tttttcaact ttatcttcga gatccttaaa
     2821 gtctttgtat ttattttcag gatggtcaac gtcaactttg ttagcgaata aagtagaaat
     2881 tatttctttt acattatcgc gtctaaattt tgcatcgtcc acttgaaaat t
//
LOCUS       DAJVUP010000271         2828 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.278, whole genome shotgun sequence.
ACCESSION   DAJVUP010000271 DAJVUP010000000
VERSION     DAJVUP010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.278"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..243
                     /locus_tag="OQQ75_004182"
     CDS             <1..243
                     /locus_tag="OQQ75_004182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978303.1"
                     /translation="LGYVYGNEEKTNEIVNNNPGYVVEIFEEKMGNELKIRTRMMEIL
                     RDGKINICEYINKEQLEKLNPPEDLRIAIKKLGWNN"
     gene            complement(315..1319)
                     /gene="argF"
                     /locus_tag="OQQ75_004183"
     CDS             complement(315..1319)
                     /gene="argF"
                     /locus_tag="OQQ75_004183"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HCS1978304.1"
                     /translation="MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLT
                     GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD
                     GIQYRGYGQEIAETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLV
                     YAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED
                     VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLP
                     AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
                     "
     gene            1481..1897
                     /gene="rraB"
                     /locus_tag="OQQ75_004184"
     CDS             1481..1897
                     /gene="rraB"
                     /locus_tag="OQQ75_004184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HCS1978305.1"
                     /translation="MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLE
                     TLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAE
                     KFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH"
     gene            complement(1943..2445)
                     /locus_tag="OQQ75_004185"
                     /pseudo
     CDS             complement(1943..2445)
                     /locus_tag="OQQ75_004185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026287.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            2638..>2828
                     /locus_tag="OQQ75_004186"
     CDS             2638..>2828
                     /locus_tag="OQQ75_004186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS1978306.1"
                     /translation="MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLP
                     WALMKCKRYLYANMEVNGQR"
BASE COUNT          780 a          629 c          648 g          771 t
ORIGIN      
        1 ttaggatatg tttatggtaa tgaagaaaaa acaaatgaaa ttgtaaataa caatccgggt
       61 tatgtcgttg agatttttga agaaaagatg ggtaatgaat taaaaattag aacaagaatg
      121 atggaaatcc tccgggatgg gaaaataaat atatgtgaat atattaataa agaacagtta
      181 gaaaaattaa atcctccgga agatttacgt atagcaataa aaaaattggg gtggaataat
      241 tgaactatta ctgcataaaa taatgtgatg ccgggatgtt tttgtatttc ccggcatctt
      301 tattgcgata tcaattattt actgagcgtc gcgaccatca ccgctttgat ggtatgcatg
      361 cggttttccg cctgatcaaa aacaatgctg gcggcagatt cgaagacctc atcagtcact
      421 tccattccgc catgtaggcc aaactcttcc gccattttct taccaagcgt cgtctggtcg
      481 tcatgaaacg cgggcaggca gtggaggaat ttgacctccg ggttaccggt caactgcatc
      541 atcttgctgt tcacctgata atcacgcagt aatgcaatcc gttctgccca tttctctttt
      601 gcttccccca tcgacaccca tacatcggta tagataaagt cagcaccttc aactcctttg
      661 gctacatctt ccgtcagcgt aatattcccg ccattttgct gtgccagggc gcggcattcc
      721 gtaaccagcg cagcttccgg ccagcatgcc tgtggcgcga ccagacgcaa atccagaccg
      781 gtaagcgccg cagcttcgag catcgaattg cccatgttgt tacgtgcgtc acctgcatag
      841 accagcgtca tttcgttgaa tgctttaccg ggtaaatgct cctgcatggt gaggagatcc
      901 gccagcaact gcgtggggtg aaactcattg gtcaggccgt tccataccgg cacgccagcg
      961 tattccgcca gtgtttcggc aatctcctga ccatagccgc gatactgaat accgtcatac
     1021 atgcgaccca gcacgcgggc agtgtcttta atcgactctt tatgaccaat ctgactgccg
     1081 cttgggccga gataagtaac gcgagcaccc tggtcatatg cggcaacttc gaaagagcat
     1141 cgggtacggg tcgagtcttt ttcgaagatg agcgcgatgt ttttaccagt gagtttggct
     1201 tcttctttgc cgcttttctt atcggctttc agcttcgcgg ctaactgcag caggctgttg
     1261 agttcagctg gcgtgaaatc gagtaatttc aggaaatgct tatgataaaa cccggacata
     1321 gatccctcct gtggctaacg cctcaatgaa ttaaaattca atttatatgg atgattattc
     1381 atttgcaagt ctaaagcata aatctttgtc acaaaggtgg aggcaatgtc agtggtatgt
     1441 gacaataaga gtatcggcag gacattaaga ggaatgagcc atggcaaacc cggaacaact
     1501 ggaagaacag cgtgaagaaa ctcgtttgat tattgaagaa ttactggaag atggcagcga
     1561 tccggacgcg ctgtacacca tcgaacacca tctttccgca gacgatctgg aaaccctgga
     1621 aaaagcagca gttgaagcgt ttaaactcgg ttacgaagtg accgatccag aagagctgga
     1681 agttgaagat ggtgatatcg tgatttgctg cgacatcctc agcgagtgcg cgttgaatgc
     1741 cgatctgatc gatgcccagg ttgaacaact gatgacattg gcggagaaat ttgacgttga
     1801 gtacgacggt tggggcactt attttgaaga tcctaatggc gaagacggcg acgatgaaga
     1861 ttttgtcgat gaagacgatg acggggttcg ccactaatta attgattaaa atgcccgata
     1921 gcacacacta gcgggcattt ttttagagtt cgcgcaacat ccgcacttca caatcaacat
     1981 ggcccgtgca gccaagtgca tagtcgatat gctcaaagcc caaatgctca taaagcgcaa
     2041 tggcttcctt taaaaagcgg tcgtttccag atagcagcgt ttgaagccca tctctcgtgc
     2101 ctgctccatc accattaagg ccagtttttt cgccagccct ttaccgcgaa tagccggaag
     2161 aaaatacatc ttttgcagtt cgcaaatgtc cgattcacta cctgctaatg gcgcaatccc
     2221 accgccgccg accacttcac cctcgtactc aaccacccaa tatgcatgac ccggctgact
     2281 atacacttga tacagttcgt caagattcgg atcggcgacg gtgtagcctt tatcagcggt
     2341 aagaccgtat tcggcggata cctgacgaat gacgcgggca atagcaggat tatcctgtag
     2401 cgtcaggcga cgcattacag gtgattgcgg cgcaatgtta ttcatagttt aacccaataa
     2461 aaataaagta attatacatt tgtttaatac cactctcttc ttacgtgcgc aagcatctta
     2521 taaagcaata aagtttttgc cagcctatta ctgataagag tattgtaacg tggcagaaca
     2581 ttttactgtc tgtatatata aattatatca atggattttt taattcaggg aatttttatg
     2641 gctcaagtta ttaatgaaat ggatgttccg tcccattcgt ttgtttttca tggtacaggt
     2701 gagagatatt ttcttatttg tgtggtgaat gtgttgttaa cgattataac gctaggtatc
     2761 tatttaccat gggcattaat gaaatgtaag cgttatctct atgctaatat ggaagttaac
     2821 ggacaacg
//
LOCUS       DAJVUP010000272         2737 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.279, whole genome shotgun sequence.
ACCESSION   DAJVUP010000272 DAJVUP010000000
VERSION     DAJVUP010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.279"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..134
                     /locus_tag="OQQ75_004187"
                     /pseudo
     CDS             1..134
                     /locus_tag="OQQ75_004187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309413.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
     gene            384..1250
                     /gene="ospB"
                     /locus_tag="OQQ75_004188"
     CDS             384..1250
                     /gene="ospB"
                     /locus_tag="OQQ75_004188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspB"
                     /protein_id="HCS1978307.1"
                     /translation="MNLDGVRPYCRTVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
                     VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
                     IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
                     VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
                     LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
                     QKKTFIINKELD"
     gene            1580..2320
                     /gene="phoN2"
                     /locus_tag="OQQ75_004189"
     CDS             1580..2320
                     /gene="phoN2"
                     /locus_tag="OQQ75_004189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAP2 family phosphatase PhoN2"
                     /protein_id="HCS1978308.1"
                     /translation="MKTKNFLLFCIATNMIFIPSANALKAEGFLTQQTSPDSLSILPP
                     PPAEDSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
                     ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDENMAITGSYPSGHA
                     SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
                     NTPEFTKSLSEAKKEFEELNTPTNELTP"
BASE COUNT          902 a          497 c          515 g          823 t
ORIGIN      
        1 cggtaagaga agttcatcat acttggcgca gttacgcgat gtttctgcta gaggtgatgc
       61 cgtaaagaac ggcagaacat taccggaaca agatagcggt ctacctgcac tggtatcaga
      121 cccggggctt ccccggatga tctccacggt actttaggta ctgtgtctat attatgtagg
      181 taggatcaat taactttgta gttgaaattc tttcattgaa ataatgaata aaaaagacaa
      241 accgcattaa acaatgccag aatataattg catttttgtt ccgttttttt aaatcatagt
      301 atacaaagaa gcttgcatac tatatgaaaa tataacaccc tttactatga tgtttataaa
      361 acaatatatg gagtcatgta ggtatgaatt tagatggtgt tagaccatac tgtagaacag
      421 tcaataaaaa gaatgaaagc atatcagata ttgcatttgc acatataata aaaagggtaa
      481 aaaattcatc atgtactcac ccaaaagcag cattggtttt tttaggagag aaaggttttt
      541 gtgatagcaa tgatgttcta tctattatgg gacaacaaat accaagagta tttaagaaca
      601 agatgttata tgattatgtt tttaaaaatg aaaaaagtaa aaatgatttt ctaaaaatgg
      661 ctgaatcatg gctaccacag agtgaaccaa tagtaataaa taatgatgat gacgcattga
      721 atgctgctgc ttatttttct gtaaaaaaag cgaaaataaa aacagtaaac gatactgatt
      781 ttaaagagta taataaggtt tatattcttg ggcacggtag tcctggttct catcaattag
      841 gccttggttc ggaacttatt gatgtacaaa caatcatttc aagaatgaaa gactgtggta
      901 ttctaaatgt gaaagatatc cgttttactt catgcggctc cgctgataaa gtggctccta
      961 aaaattttaa caatgcccct gctgaaagtc tttcttgtat ccttaactct ctgccttttt
     1021 ttaaggaaaa agaatctttg ctagagcaga taaaaaaaca ccttgaaaac gatgagtcat
     1081 tgagtgatgg tctaaaaata tccggctatc atggatatgg agttcactat ggtcaagagc
     1141 tttttcccta ctcacattat cgttcaactt caattcctgc tgatccggag catacagtaa
     1201 aaagaagctc tcagaaaaag acttttatta ttaataaaga actggattag tataaaattt
     1261 ttaacctata gttaattgtt tgcatttaag atgaagttat ttttttcttt agtagaaaag
     1321 tgcttcccta tgagggaaaa tcacaaatca tcataataca gagacaaaac gatacgaaca
     1381 aatagataaa aaacatcatt cttttactac attatttttc gtgaatatga aaaataatgt
     1441 tattacttta atataagact attttttgtt tttccatcac tctgttcaaa tttttccgca
     1501 tgacttgtgt tttttgtaac acagctcgtt ttttacagct gaccaaaatc atcaattaat
     1561 tatgctaagg aaataaatta tgaaaaccaa aaactttctt cttttttgta ttgctacaaa
     1621 tatgattttt atcccctcag caaatgctct gaaggcagaa ggttttctca ctcaacaaac
     1681 ttcaccagac agtttgtcaa tacttccgcc gcctccggca gaggattcag tagtatttca
     1741 ggctgacaaa gctcattatg aattcggccg ctcgctccgg gatgctaatc gtgtacgtct
     1801 cgctagcgaa gatgcatact acgagaattt tggtcttgca ttttcagatg cttatggcat
     1861 ggatatttca agggaaaata ccccaatctt atatcagttg ttaacacaag tactacagga
     1921 tagccatgat tacgccgtgc gtaacgccaa agaatattat aaaagagttc gtccattcgt
     1981 tatttataaa gacgcaacct gtacacctga taaagatgag aacatggcta tcactggctc
     2041 ttatccctct ggtcatgcat cctttggttg ggcagtagca ctgatacttg cggagattaa
     2101 tcctcaacgt aaagcggaaa tacttcgacg tggatatgag tttggagaaa gtcgggtcat
     2161 ctgcggtgcg cattggcaaa gcgatgtaga ggctgggcgt ttaatgggag catcggttgt
     2221 tgcagtactt cataatacac ctgaatttac caaaagcctt agcgaagcca aaaaagagtt
     2281 tgaagaatta aatactccta ccaatgaact gaccccataa agctggacag cctgtatcag
     2341 gctatggagg gcccatagac aaatctaccc tatatgagca taggaggagt ctatgggcac
     2401 accacgtttt acccctgaat ttaagggatt actggaaagg ctgggacata tccctccggc
     2461 agaagcagaa aaagcttatt atgctgccat cggaaacgat gatctggcaa cctgagttca
     2521 cagataaaac attctctagg aaactcgggg cggttccgtt caccacatgc aatgtggtgt
     2581 tgcaggggaa cggtctgcac catcccctat gtcgatcaat ataacagaaa tgacaacttc
     2641 agattcaggg cacaacctaa atatatttta ggtcacctct caaatcgttt gcctgatacc
     2701 gctccatttt ttaataaaaa atcaatcatt tttgaat
//
LOCUS       DAJVUP010000273         2734 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.280, whole genome shotgun sequence.
ACCESSION   DAJVUP010000273 DAJVUP010000000
VERSION     DAJVUP010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.280"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..185)
                     /gene="fumD"
                     /locus_tag="OQQ75_004190"
     CDS             complement(<1..185)
                     /gene="fumD"
                     /locus_tag="OQQ75_004190"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="HCS1978309.1"
                     /translation="MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTA
                     LANKRIQRSELDKQAMET"
     gene            742..2154
                     /gene="pykF"
                     /locus_tag="OQQ75_004191"
     CDS             742..2154
                     /gene="pykF"
                     /locus_tag="OQQ75_004191"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010346010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase PykF"
                     /protein_id="HCS1978310.1"
                     /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG
                     QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN
                     SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL
                     PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII
                     SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT
                     ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER
                     TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP
                     DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV
                     MVSGALVPSGTTNTASVHVL"
     gene            2465..2701
                     /gene="lpp"
                     /locus_tag="OQQ75_004192"
     CDS             2465..2701
                     /gene="lpp"
                     /locus_tag="OQQ75_004192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein lipoprotein Lpp"
                     /protein_id="HCS1978311.1"
                     /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL
                     SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK"
BASE COUNT          769 a          658 c          587 g          720 t
ORIGIN      
        1 gtttccatcg cctgcttatc cagctcactg cgctgaatgc gtttattggc taatgctgta
       61 cgtaatacgc ctgcgataac aatatgcttt ggttcctgcc ccagatcgcg catttccagc
      121 acaactttac cgacaactct gcacatttct cggtacagtt catcctcttt tgtccgattt
      181 cccattcttt atacctattt atcatgccaa ctatcagcat atatcaatct aaccaattaa
      241 acaaaaatca aacaaaatca gacaaataac gcgataaatt attttaactg tagcaattga
      301 gcgatgatat atttatacac cggatgaact ttcacttatc ctcacactga caactttggc
      361 accagacgtt gcgcaaacag cgaagttttt gcgtaacctt ttccctggaa cgttaaatct
      421 ttgataacaa tttattgtct aacaagttgt atattttttg aaacgctgtt tttgttttcc
      481 ttttggatta atttcagcgt ataatgcgcg ccaattgact cttgaatggt ttcagcactt
      541 tggactgtag aactcaacga ctcaaaaaca ggcactcacg ttgggctgag acacaagcac
      601 acattcctct gcacgctttt tcgatgtcac ttatccttag agcgaggcac caccactttc
      661 gtaataccgg attcgctttc cggcagtgcg cccagaaagc aagtttctcc catccttctc
      721 aacttaaaga ctaagactgt catgaaaaag accaaaattg tttgcaccat cggaccgaaa
      781 accgaatctg aagagatgtt agctaaaatg ctggacgctg gcatgaacgt tatgcgtctg
      841 aacttctctc atggtgacta tgcagaacac ggtcagcgca ttcagaatct gcgcaacgtg
      901 atgagcaaaa ctggtaaaac cgccgctatc ctgcttgata ccaaaggtcc ggaaatccgc
      961 accatgaaac tggaaggcgg taacgacgtt tctctgaaag ctggtcagac ctttactttc
     1021 accactgata aatctgttat cggcaacagc gaaatggttg cggtaacgta tgaaggtttc
     1081 actactgacc tgtcagttgg caacaccgta ctggttgacg atggtctgat cggtatggaa
     1141 gttaccgcca ttgaaggtaa caaagttatc tgtaaagtgc tgaacaacgg tgacctgggc
     1201 gaaaacaaag gtgtgaacct gcctggcgtt tccattgctc tgccagcact ggctgaaaaa
     1261 gacaaacagg acctgatctt tggttgcgaa caaggcgtag actttgttgc tgcttccttt
     1321 attcgtaagc gttctgacgt tatcgaaatc cgtgagcacc tgaaagcgca cggcggcgaa
     1381 aacatccaca tcatctccaa aatcgaaaac caggaaggcc tcaacaactt cgacgaaatc
     1441 ctcgaagcct ctgacggcat catggttgcg cgtggcgacc tgggtgtaga aatcccggta
     1501 gaagaagtta tcttcgccca gaagatgatg atcgaaaaat gtatccgtgc acgtaaagtc
     1561 gttatcactg cgacccagat gctggattcc atgatcaaaa acccacgccc gactcgcgca
     1621 gaagccggtg acgttgcaaa cgccatcctc gacggtactg atgcagtgat gctgtctggt
     1681 gaatccgcaa aaggtaaata cccgctggaa gcggtttcta tcatggcgac catctgcgaa
     1741 cgtaccgacc gcgtgatgaa cagccgtctc gagttcaaca atgacaaccg taaactgcgc
     1801 attaccgaag cggtatgccg tggtgccgtt gaaactgctg aaaaactgga tgctccgctg
     1861 atcgtggttg ctactcaggg cggtaaatct gctcgcgcag tacgtaaata cttcccggat
     1921 gccaccatcc tggcactgac caccaacgaa aaaacggctc atcagttggt actgagcaaa
     1981 ggcgttgtgc cgcagctggt taaagagatc acttctactg atgatttcta ccgtctgggt
     2041 aaagaactgg ctctgcagag cggtctggca cacaaaggtg acgttgtagt tatggtttct
     2101 ggtgcactgg taccgagcgg cactactaac accgcatctg ttcacgtcct gtaatattgc
     2161 ttttgtgaat taatttgtat atcgaagcgc cctgatgggc gcttttttta tttaatcgat
     2221 aaccagaagc aataaaaaat caaatcggat ttcactatat aatctcactt tatctaagat
     2281 gaatccgatg gaagcatcct gttttctctc aattttttta tctaaaaccc agcgttcgat
     2341 gcttctttga gcgaacgatc aaaaataagt gccttcccat caaaaaaata ttctcaacat
     2401 aaaaaacttt gtgtaatact tgtaacgcta catggagatt aactcaatct agagggtatt
     2461 aataatgaaa gctactaaac tggtactggg cgcggtaatc ctgggttcta ctctgctggc
     2521 aggttgctcc agcaacgcta aaatcgatca gctgtcttct gacgttcaga ctctgaacgc
     2581 taaagttgac cagctgagca acgacgtgaa cgcaatgcgt tccgacgttc aggctgctaa
     2641 agatgacgca gctcgtgcta accagcgtct ggacaacatg gctactaaat accgcaagta
     2701 atagtacctg tgaagtgaaa aatggcgcac attg
//
LOCUS       DAJVUP010000274         2730 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.281, whole genome shotgun sequence.
ACCESSION   DAJVUP010000274 DAJVUP010000000
VERSION     DAJVUP010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.281"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..211)
                     /locus_tag="OQQ75_004193"
     CDS             complement(<1..211)
                     /locus_tag="OQQ75_004193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978312.1"
                     /translation="MIRFRLYIPPVILGFVIVPLLVWPTVIVLAVLIFTLTFLAEIIF
                     SFPLLVVCISLQELQLELMVEYALFF"
     gene            complement(214..981)
                     /locus_tag="OQQ75_004194"
     CDS             complement(214..981)
                     /locus_tag="OQQ75_004194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001182130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978313.1"
                     /translation="MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALR
                     STSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRIN
                     LANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS
                     VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIEN
                     PLKQPEPMTEYQVWEDDWIIDECLCAMYDASSESLGK"
     gene            complement(984..1694)
                     /locus_tag="OQQ75_004195"
     CDS             complement(984..1694)
                     /locus_tag="OQQ75_004195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978314.1"
                     /translation="MELVNTLFASLAGTDPFTGVDITIANCKSAYWDEGIVQQLINQA
                     LDEGEKFVGADGLEGLLRYDVTLNIGLTSSKVWPGFSLDTATISRLCACGADFGFDPY
                     ISDVPDVQCDLNTTNDVTVQFTAMLNPDERVIIAKRPLKKCDSWIEDVYIFQVFKDAW
                     KFHNNNSLRGFRDKQAELKLYTRHYSVENCAEESCRDCNSCIRPSFSLSRSALIRLNA
                     ANARFVYQPFTRDQRARG"
     gene            complement(1710..2730)
                     /locus_tag="OQQ75_004196"
                     /pseudo
     CDS             complement(1710..2730)
                     /locus_tag="OQQ75_004196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001472437.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
BASE COUNT          754 a          639 c          611 g          726 t
ORIGIN      
        1 tgaaaaaaag tgcatattca accattaact caagttgtaa ttcctgaaga gaaatacaca
       61 caaccaggag cggaaaggag aatattattt ctgccagaaa agttaacgtg aatataagta
      121 cggctaagac aataaccgtc ggccatacca ataatggcac gataacaaaa ccgagaatta
      181 cagggggaat ataaagccgg aatctaatca tttttatttt cctagtgatt cggatgatgc
      241 gtcatacatc gcgcataaac actcatcaat tatccagtca tcttcccaga cctgatattc
      301 tgtcattggt tcgggctgtt ttagcgggtt ctcaatcgct tgccgcgctc tttctttcag
      361 taaaggatga ttatttctag cccaggcatt gatttgggtg gtaatgacgt tatcgatatc
      421 gtcctggtta tctctgatat aatcctcaca atatctgttc aataaacagg caagagaaac
      481 ggtcgaccaa aagccgggaa ctgaattaat ggcatccagc aatggcgcaa gagcgatatc
      541 ggcacggaaa aacatttcca gcatatactg taattcgaca gcttcatcgc cggataccca
      601 atcagtcata tactggcagg caaatcgctg taaaattgcc cgttcatccg cacgccagtt
      661 ttctttgttg gcaaggttga tacggcgcag agaaaaaact acgtgaatat tgtcaaaatg
      721 cccctgtgca acaaattcca gtaaacgcgg cagaaaatag cggacctcat cgctattttg
      781 cggatcaggc cctgggctac tattccaggc attgattaag gaatacggga tcgctcgtaa
      841 cgatgtactc cgtaatgcct tttgttcctg ctgactcagg caatattcac aacaaaccac
      901 aaatttctgc ggcacccgat aacgacgaaa ggtgtgataa atctgctcaa ttaatgcctg
      961 catggcgggg ctgggttgca tagttacccc ctcgcccgct gatcgcgtgt aaacggttga
     1021 tagacaaaac gagcattcgc cgcgttcagg cgaataaggg cgctacgcga aagggaaaag
     1081 ctggggcgaa tgcaactatt gcagtctcga cagctttcct ctgcgcaatt ttccactgag
     1141 taatgacgcg tgtagagttt cagttcggcc tgcttatcgc gaaatccgcg taaactgtta
     1201 ttgttatgaa atttccaggc atctttaaag acctgaaaga tatagacatc ctcaatccag
     1261 gagtcacatt ttttaagcgg gcgctttgct attatcaccc gctcatccgg atttagcatc
     1321 gccgtaaatt gtacggtgac gtcatttgtc gtgttcaggt cacattgaac atctggtaca
     1381 tcactgatat aggggtcaaa tccaaaatca gcaccacagg cacaaagacg gctaatggtg
     1441 gcggtatcga gggaaaatcc cggccatact ttgctggagg ttaagccaat atttaatgtg
     1501 acatcatatc gaagcaatcc ctcaagaccg tcagcaccga cgaacttttc cccttcatcc
     1561 agggcctggt taataagttg ctgaacaatg ccttcatccc agtatgccga tttgcagttg
     1621 gcaatcgtaa tatccacgcc tgtgaaggga tcagtaccgg caaggcttgc aaataatgta
     1681 ttaactaatt ccatttttat tatccagctt taaggtagcg tcttatacat cgggacataa
     1741 cctacatctt ccaccaaact ctgtccctgc ggcgttaaaa accactccaa caatttttgt
     1801 gtctctgacg tcgtattttc ccgcgttacc ataaaggcat cgatgatata gggatatttg
     1861 ccgttgcgaa tgttttcggc agtcggtgca ataccgttaa tcgctagcag ttttatattt
     1921 ttatcggcgt tcatttgtgt tgcgtaataa cggaaggtgt aacctattgc gttgtttgta
     1981 ttacggtatt cggcaacgac tttaatcatt ccctccatca tacttgccac ttctgtttcc
     2041 tgcggcgaga tcatgcggac atttttcatg acctgggatt gcatcaccgt ctggctacca
     2101 gagtcttccg ggcgttgcta ggtctggatc tcctgatcgt taccgccaac agtacgccag
     2161 ttggtaattg caccactgaa gatgtcacgc acctgttgtt cagtcaggga attaaccgga
     2221 ttatccgcat tgacgatgaa aacaaacgct tcacgggcaa aaggcgtgta cagcaaagta
     2281 atgcccgatt cctcagcgcg ttttttctgc ccaccggaag gttgcgccac aaaaataata
     2341 tcagcatcac ctttaacaat cctgttatac gcatcggggg tacgagagct ctccagatat
     2401 tccctggtgt gaaaatcttc cggtataacg ctcaaagcat aaaatgcaga ggcataaatt
     2461 gggtacgccg ccgtagcacc atcgagtcgc ggccagtttt gcgtaaactg aatttgcggt
     2521 ttaccacgca gtggtgtcag ttgattattg agtttatcgg gtcgccaggc ccaggtatca
     2581 atattttcgc gcacaccgac gccgggattg agctgtttat ataaataacc ctgataacca
     2641 gcgacaaaac caagcatgag aaggataaac aggagggaat tacggcaacg tagcccggat
     2701 gtaccggtta aaggatgtct ggttggccgg
//
LOCUS       DAJVUP010000275         2705 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.282, whole genome shotgun sequence.
ACCESSION   DAJVUP010000275 DAJVUP010000000
VERSION     DAJVUP010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.282"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..2657)
                     /locus_tag="OQQ75_004197"
     CDS             complement(<1..2657)
                     /locus_tag="OQQ75_004197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1978315.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVEGPVDGLKS
                     VLLNSTPVLDSEGNTNISGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRFTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGSQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTFKPAYSNNMAWCL
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNAVEVNWIDPDNGWETATELVEDTQAIARYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISIGGRVLAVNSQTRTLTLD
                     REITLPSSGTTLISLVDGQGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL
                     RQRLFRCVSIRENDGGTYAITAVQHVPEKEAIVDNGAHFDGDQSGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVTADDGSERLVSTARTTETTYRFRQ
                     LALGRYMLTVRAVNAWGQLGDPASVSFRIAAPAAPSRIELTPGYFQITATPHLAVYDP
                     TVQFEFWFSEKRITDIRKVETTARYLGTGLYWIAASINIKPGHDYYFYVRSVNTVGKS
                     AFVEAVGQPSDDASGYLDFFKGEIGKTHLAQELWTQIDNGQLAPDLAEIRTSIKDVSN
                     EITQTVNKKLEDQSAAIQQIQKVQVDTNN"
BASE COUNT          526 a          873 c          692 g          614 t
ORIGIN      
        1 ttattatttg tatcaacctg aaccttctgt atctgctgaa ttgccgcact ctggtcttcc
       61 agtttcttat tgacggtctg cgtgatttca ttgctgacat ccttaatgga cgtcctgatt
      121 tcagccaggt caggcgcaag ctgaccgtta tcaatctgcg tccacagctc ctgagccaga
      181 tgggttttcc ctatctcgcc tttgaaaaaa tccagataac cggatgcatc atcactcggc
      241 tgaccaacag cctccacgaa tgccgatttg ccaacggtgt tcacactgcg aacgtaaaaa
      301 taataatcat ggcccggttt gatattgata ctggcggcta tccagtacag ccccgtgcca
      361 agatagcgcg ctgtggtttc aaccttcctg atatcggtaa tccgcttttc cgaaaaccag
      421 aactcaaact gtaccgtcgg gtcataaacg gcaagatgcg gcgtggcggt tatctgaaaa
      481 tagcccggcg tcagctcaat ccgcgacggc gctgccggtg cggcaatccg gaacgatacc
      541 gacgccggat cgcccagctg tccccacgca tttaccgccc ggaccgtcaa catgtaacgc
      601 cccagcgcca gctgcctgaa gcggtatgtg gtttccgtcg tccgggccgt gctgaccagc
      661 cgctcactgc catcgtccgc tgtcacggtc aggcgaagca ggaagctcac gcccttcacc
      721 accttcggcg tgtcccagcg ggccagtacc tgatactccc cgctgtctgc ggtgacttcg
      781 gcagtcaggt gctgcaccgc tggcggcgtg acaccattca ccgtgccgct ctggtcgccg
      841 tcaaagtgcg ccccgttatc cacgatggct tctttttccg gtacatgctg cacggcggtg
      901 atggcatacg tgccgccatc gttctcacgg atactcacgc agcggaacag gcgctggcgc
      961 agcgtcggca gcttcagccc ccacacgctg tattcggcaa cgccgtcagg aacacggctc
     1021 actttcacct tcacgccgtc ggtgacggac tggacctcca cgctgaccgg attcccctgt
     1081 ccgtcaacca ggcttatcag cgtggtgccg gaggatggca gcgtgatttc acggtcgagc
     1141 gtcagtgtcc gcgtctggct gttcaccgcc agcacgcgcc cgccgatgct gataccggca
     1201 tagtcatcat cacagatttc aatgacatcg cccggtacat ggcgaagccc ttctgcaccc
     1261 acgctgaagt ccacggtctg cgtttccagc agctccgttt taatcagcca cagcccggcg
     1321 cggtgtgcct gcccccggct ggtacagcca aaggcatcca tcttcgtgac gttacgaccg
     1381 taacgggcaa tggcctgcgt atcttcaaca agctctgtcg ccgtctccca gccgttatcc
     1441 gggtcaatcc agttcacctc aacggcatta tggcggtcct tcagggcgct gaagctgtag
     1501 cggaacggcg cgccatcatc cggcatcacc acattactgc ggttataggt ccacacctta
     1561 tccgacggtc ggtcctgcac gaacgtcagc gtctgcccgt tccataccgg catacagcgc
     1621 atcgccgaac agaaatcact gagcacatcc cacgccttac gctgtgtggt caggtaagcg
     1681 ttacaggtga tgcgcggctc cgtgccacca aagccatccg gcactgactg gtcgcagtac
     1741 tggccgatga catacagcgc ccatttgtcc acatccgccg caccaagacg tttccccatg
     1801 ccgtagcgtg gatgggtcag catatcccac agacaccagg ccatgttatt gctgtatgct
     1861 ggcttaaacg ttccgtccca gataccgctg tattgccgag tctgcgggtt atagttcgac
     1921 ggcacctgca gaatacgccc gcgcagatga taattacggc tcacctgctg gctgccgaac
     1981 tgctccgaat ccacctgtac gccgaccagt gccgtgttcg ggtagcactg tttcacatcg
     2041 atgatttcgg tgtatgacga ccagagcgtt ttgttctgca gctggtctgt ggtgctgtcc
     2101 ggcgtcatcc tgcgcatccg gatattgaac gggcgcggcg gcaggttacc caccaccacc
     2161 gatgctagat actgtgaggt ggttttgcct ttaatggtga tgtctttttc cgtcacccag
     2221 ccaccattac gctgtatctg aaccagcagg cggacttccg acggattccg gtcccccttt
     2281 gaggtggttt ccaccagtgc ctgcacaccg aaggtaaagc gcagacggtc gatgtttgcc
     2341 gacgtgatgg tccgggtaat cggcgtgtcg tacttcactt ccgtacccag caccgtctcg
     2401 gagccggagg attcaaatcc ctccggcggt gtctgctcct gctcaccggc ccggaacacc
     2461 accgtgacgc cggatatatt ggtattcccc tcactgtcca gcaccggcgt actgttcagc
     2521 agcacgcttt ttaatccatc caccggacct tcaaccggcc cttcgctgat ggcatcgatc
     2581 acactcagca gctgcgtgga cttcaggttg tccttcgctt cgcgcggggt atgcccctta
     2641 ctgcttcctt tacccattcc tcacactcca taaacaacaa agccgcccaa aaggcggctc
     2701 atgag
//
LOCUS       DAJVUP010000276         2668 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.283, whole genome shotgun sequence.
ACCESSION   DAJVUP010000276 DAJVUP010000000
VERSION     DAJVUP010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.283"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            45..770
                     /locus_tag="OQQ75_004198"
     CDS             45..770
                     /locus_tag="OQQ75_004198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005112197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS1978316.1"
                     /translation="MKILNSNLITNISSTIRNHLLTSSKNIKTPPSPNMDVTSHRRLF
                     QKDGIGLSQTGKATQLVIMSHGGWKEISHPQTLFTRQKGDGWTVVPKNLRIDFYTKDN
                     DFTKGLSVLSEVNKRHTEAQKGLTPSLNISKDDLKVLANARNIPQSKLEEEMMSQAIY
                     RKEYATSNEKIKNYALYYHEQAQNIIQRHQDGLGNKNIDIAFITDKNHKKHLSDIFKV
                     INESGVKYDVIHFGACRVNREEK"
     gene            complement(996..1319)
                     /locus_tag="OQQ75_004199"
     CDS             complement(996..1319)
                     /locus_tag="OQQ75_004199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nikA protein"
                     /protein_id="HCS1978317.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR
                     AAALGKNVNSLTDDRVLKEVMRLGALQKKLFIDGKRIGDREYAEVLIAITEYHRALLS
                     RLMAD"
     gene            1592..1786
                     /locus_tag="OQQ75_004200"
     CDS             1592..1786
                     /locus_tag="OQQ75_004200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1978318.1"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHEL
                     AEELQNSIQTRFEVENSTER"
BASE COUNT          863 a          657 c          563 g          585 t
ORIGIN      
        1 aaaaaaaaac aataaaaaac accgcaaaaa tggattgtta acaaatgaaa atactcaatt
       61 cgaatctcat aacaaacata tcatcaacaa taagaaatca ccttctaaca tcatccaaaa
      121 atataaaaac acccccatca ccaaacatgg acgtaacaag tcatcgtcgt ttattccaga
      181 aagacggaat aggattgagc caaacaggaa aagcaacaca acttgtcatt atgtcgcatg
      241 gtggatggaa agagatctcc catccacaaa cactattcac gcgtcaaaaa ggcgatggat
      301 ggactgtagt ccccaaaaac ctaagaattg atttttatac aaaagacaac gacttcacaa
      361 agggactaag cgttctttca gaggtaaaca aacgccatac tgaagctcaa aaagggttaa
      421 caccatcact aaacataagc aaagatgacc taaaagttct agcgaacgcg cgcaatatac
      481 ctcaatcaaa attagaagaa gaaatgatgt cacaagccat atatagaaaa gaatacgcaa
      541 caagtaatga gaagataaaa aactatgctc tatattacca tgaacaagcc caaaatatta
      601 tacaaagaca tcaagatggc ttaggaaaca aaaatattga tatagcattt ataactgata
      661 aaaatcataa gaagcacctt tctgacatat ttaaagtaat aaatgaatca ggagtaaaat
      721 atgatgtaat tcactttggc gcttgccgag taaatagaga ggagaaataa tcatcattta
      781 ccataatccc ttaattgtac gcaccactga aacgcgctga acgcgattct gacgcagaca
      841 ccacaaaaat agatgtttta ccccggaaaa acaggaagga tgcgtcagga tcgttttcag
      901 ctcgctgcat agctatgcat gaaagcgaat ggagatcact ttgggagctt accgtgttca
      961 taccgtctgt tttcaacagt tttctccccg ggaagctaat ctgccataag cctggataac
     1021 agggcacggt gatactccgt aatagcgatc agcacctccg catactccct gtccccgata
     1081 cgcttgccgt cgataaagag ttttttctgt aacgccccca gtctcataac ttctttcagt
     1141 acccgatcat cagtcagtga gttaacgttc ttaccgagag ctgccgcccg taaaaaaccg
     1201 gaaacggtct tgccgcattc agcagccctt tttctgattt cctggtcttc ttctgccgtc
     1261 agacgaacag ggcgactgat agcccgcctg cgcgtattac ttccacttcg ttttgtcata
     1321 aaacatggct ccgtatctga catgggtgtc ggggcaaagc cctgaccagg gcaattgtaa
     1381 tagcgtgcat gtatgcgcgg tataacaatt gcacatcctg tcctgtcagc aagctcgaat
     1441 taccgacaaa ggcacggcag ttttttggca gttacagtgt tgtctgacag aaatacccgt
     1501 caaaaagcca ggcggcagca aaacagtcga aaagtggtac gcgatataat cacataacgc
     1561 agatgacaga cagaacggag aaaacgaaaa gatgaacaag cagcagcaag ccgtactcaa
     1621 catggcggga ttcataaaaa gccagagcct gacgctgctc gaaaaactgg acgcactcga
     1681 tgctgacgag caggccacca tgtgtgagaa actacacgaa ctcgcagaag aactccagaa
     1741 cagcatacag acacgctttg aagtagaaaa tagcacagag agataacgct caggacagga
     1801 tgtcgaacgg cacaacagag cgtaaggaga aaatgtcaca taaggcgctc ttccgcttcc
     1861 tcgctcactg actcgctacg ctcggtcgtt cgactgcggc gagcggtatc agctcactca
     1921 aaggcggtaa tgcggttatc cacagaatca ggggataacg ccggaaagaa catgtgagca
     1981 aaaagccgaa ggcagggaca aaggccgcgc aggtggcgtt tttccatagg ctccgccccc
     2041 ctgacgagca tcacaaaaat cgacgctcaa gtcagaggtg gcgaaacccg acaggactat
     2101 aaagatacca ggcgtttccc cctggaagct ccctcgtgcg ctctcctgtt ccgaccctgc
     2161 cgcttaccgg atacctgtcc gcctttctcc cttcgggaag cgtggcgctt tctcatagct
     2221 cacgctgttg gtatctcagt tcggtgtagg tcgttcgctc caagctgggc tgtgtgcacg
     2281 aaccccccgt tcagcccgac cgctgcgcct tatccggtaa ctatcgtctt gagtccaacc
     2341 cggtaagaca cgaattatcg ccactggcag cagccactga taaccgaatt agaggagtaa
     2401 gacttgaagt catgcgcctg ttaaggctaa actgaaagaa caagttttgg tgactgcgct
     2461 cctccaagcc agttacctcg gctcaaagag ttggtatctc tgagaacctt cgaaaaaccg
     2521 ccttgcaggg cggttttttc gtttacaggc agtagattac gcgcagaaaa aaaggatctc
     2581 aagaagaacc tttaattttt tttcacactt ggtatcctac tttaacccat aaaataaaca
     2641 cttacaccga cacgccctta aacaaaag
//
LOCUS       DAJVUP010000277         2637 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.284, whole genome shotgun sequence.
ACCESSION   DAJVUP010000277 DAJVUP010000000
VERSION     DAJVUP010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.284"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1863)
                     /locus_tag="OQQ75_004201"
     CDS             complement(<1..1863)
                     /locus_tag="OQQ75_004201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS1978319.1"
                     /translation="MNKIFKVIWNPATGNYTVTSETAKSRGKKSGRSKLLISALVAGG
                     MLSSFGALANAGNDNGQGVDYGSGSAGDGWVAIGKGAKANTFMNTSGSSTAVGYDAIA
                     EGQYSSAIGSKTHAIGGASMAFGVSAISEGDRSIALGASSYSLGQYSMALGRYSKALG
                     KLSIAMGDSSKAEGANAIALGNATKATEIMSIALGDTANASKAYSMALGASSVASEEN
                     AIALGRSSVASGTDSLAFGRQSLASAANAIAIGAETEAAENATAIGNNAKAKGTNSMA
                     MGFGSLADKVNTIALGNGSQALADNAIAIGQGNKADGVDAIALGNGSQSRGLNTIALG
                     TASNATGDKSLALGSNSSANGINSVALGADSIADLDNTVSVGNSSLKRKIVNVKNGAI
                     KSDSYDAINGSQLYAISDSVAKRLGGGAAVDVDDGTVTAPTYNLKNGSKNNVGAALAV
                     LDENTLQWDQTKGKYSAAHGTSSPTASVITDVADGTISASSKDAVNGSQLKATNDDVE
                     ANTANIATNTSNIATNTANIATNTTNITNLTDSVGDLQADALLWNETKKAFSAAHGQD
                     TTSKITNVKDADLTADSTDAVNGSQLKTTNDAVATNTTNIANNTSNIATNTTNIS"
     gene            complement(1907..2590)
                     /locus_tag="OQQ75_004202"
     CDS             complement(1907..2590)
                     /locus_tag="OQQ75_004202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS1978320.1"
                     /translation="MNLKKIFFSAVTVSVLCALTGCDYIEEGKPESSLLKQQEEHNNK
                     IDLLEKQRAQLKSQLETIQKQQTGIISSTKTLTHVIKSVKDQQNTFIFTEFNPAKTKY
                     FILNNGSVALAGRVLSIDATENGSVIHISLVNLLSTPISNIGFNATWGGEKPVDAKEF
                     ARWQQLLFNTSMKSTLKLLPGQWQDINLTLKGVSPNNLGYLKLAINMENIQFDNLPSA
                     ENRQKRSKK"
BASE COUNT          618 a          626 c          582 g          811 t
ORIGIN      
        1 agagatgttg gtggtgttag tggcaatatt ggaagtgtta ttggcgatat tggtggtatt
       61 cgtcgccaca gcatcgttgg tggttttcag ctgagagccg ttaacagcat cagtgctgtc
      121 agccgtcagg tcggcatctt taacgttggt gattttgctg gtggtatcct ggccgtgagc
      181 tgcactgaat gcctttttag tttcgttcca gagcagggca tcagcctgaa ggtcaccaac
      241 ggaatccgtc aggttggtga tattggtggt attggtggca atatttgccg tattcgtggc
      301 aatgttgctg gtattagtag cgatattggc ggtgttggct tcgacatcgt cattggtagc
      361 tttcagttgg gaaccgttaa ccgcatcctt actggaggct gaaatcgtgc catccgcaac
      421 atcggtgatt acgctggcag ttgggctact agtaccatga gcagcgctgt atttgccttt
      481 ggtttggtcc cattgcaggg tgttttcatc aagtacagcg agcgcagccc ctacgttatt
      541 tttgctacca ttttttaaat tgtaggttgg tgctgtaaca gtaccgtcat caacatctac
      601 tgcagcccct cctccaagcc tttttgctac cgagtcgcta atggcataaa gctgtgaacc
      661 attaatggca tcgtaactgt cagacttgat cgcgccattt ttcacattaa cgatcttgcg
      721 ttttaatgaa ctattgccga cagagacggt attgtctaaa tccgcaatgg aatctgcgcc
      781 cagcgcgaca gagttaatac cgttggcact gctattacta ccaagcgcaa gactcttatc
      841 accagttgca ttactggctg tgcctaaggc aatggtgttt aagcctctcg actggctacc
      901 attacccaga gcgatggcat ccacgccatc agctttgttg ccctggccta tggcgattgc
      961 attatctgcc agagcctggc tgccatttcc taatgcgata gtattgactt tatcggcaag
     1021 gcttccgaac cccattgcca tgctattagt cccttttgcc ttcgcattat tgccaatagc
     1081 agttgcattt tcagcggctt cggtctcagc acctatcgca atagcgttcg ctgcgctggc
     1141 aagtgattgt ctgccaaatg cgaggctgtc agtaccgcta gctacactgc tacgccccag
     1201 ggcaattgcg ttttcttcag atgcgacgct acttgctccc agcgccattg aatacgcttt
     1261 tgacgcattg gcggtgtcgc caagagcaat actcataatc tcagtagctt tagtggcatt
     1321 tcccagggca atggcgtttg ctccttccgc tttggaagag tcccccatag caatagacaa
     1381 tttacccaat gcttttgaat aacggccgag ggccattgag tattggccca atgaatacga
     1441 agaggcaccc agtgctatac ttctatcgcc ttctgatatt gcactaaccc caaaggccat
     1501 tgatgcacca ccaatcgcat gggtttttga cccgatggca gagctatatt ggccttcagc
     1561 tatagcgtca taacccacag cagtactgga accactggtg ttcataaaag tatttgcttt
     1621 cgcccctttg cctatagcaa cccagccgtc gccagctgat ccactaccgt aatcaacacc
     1681 ctgaccgttg tcattcccgg cattcgccaa tgccccaaac gacgacaaca ttccacccgc
     1741 aaccagcgca gaaattaaca gcttactgcg cccagatttc ttgccacggc tttttgccgt
     1801 ttcgctggta acagtataat tccctgtcgc agggttccag ataactttaa atattttgtt
     1861 cattaatgat gctcgctatt ccttgttata agtgtactaa ctgcatttat tttttgcttc
     1921 ttttctgccg attttcagca gagggaagat tgtcgaactg aatattttcc atgttgatgg
     1981 ctaacttcag atatcccagg ttattgggcg agacaccctt cagggtcaaa ttaatgtctt
     2041 gccattgacc tggtaataat ttcaatgtgg atttcattga tgtgttgaaa agtaattgtt
     2101 gccaccgggc aaactctttg gcatcgacag gtttttcacc accccatgtc gcattaaaac
     2161 caatatttga gataggtgta cttaataagt tgaccagtga aatatgaata acactgccat
     2221 tctctgtggc gtcaatggat aacactcgac ccgctaaagc caccgaacca ttgttcagga
     2281 tgaaatactt cgtttttgct gggttaaact cggtaaaaat aaaagtgttt tgttgatctt
     2341 taacggattt aattacgtga gttaaagtct ttgtactgct tattatgcca gtttgttgtt
     2401 tttgaatagt ttccagttga ctctttagct gtgctcgttg tttttcaagt agatcaattt
     2461 tattgttatg ttcttcttgt tgtttcaata aactactttc tggcttgcct tcttcaatgt
     2521 agtcacatcc cgttaatgcg cagagaactg aaacagtgac agcactgaaa aaaatcttct
     2581 tcaagttcat gtaaaaatcc ttatttcctc cgaccagcga tcaatgccgg tagagtt
//
LOCUS       DAJVUP010000278         2599 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.285, whole genome shotgun sequence.
ACCESSION   DAJVUP010000278 DAJVUP010000000
VERSION     DAJVUP010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.285"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..906
                     /locus_tag="OQQ75_004203"
     CDS             <1..906
                     /locus_tag="OQQ75_004203"
                     /EC_number="2.7.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine kinase"
                     /protein_id="HCS1978321.1"
                     /translation="ANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNK
                     AWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDM
                     NISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAWKCV
                     KVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVY
                     YSDISGENSWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALS
                     CEYTNNPDLSIANVISLVENAERLN"
     gene            873..1832
                     /gene="psuG"
                     /locus_tag="OQQ75_004204"
     CDS             873..1832
                     /gene="psuG"
                     /locus_tag="OQQ75_004204"
                     /EC_number="4.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HCS1978322.1"
                     /translation="MVSGERRTSELKISPELLQISPEVQDALKNKKPVVALESTIISH
                     GMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEFELLGREGHNVTKVS
                     RRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQEL
                     ANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSSFDVSIRLDS
                     ASEIARAMAVKWQSGLNGGLVVANPIPEQFAMPEESINAAIDQAVAEAEEQGVIGKES
                     TLFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG"
     gene            1926..2599
                     /locus_tag="OQQ75_004205"
                     /pseudo
     CDS             1926..2599
                     /locus_tag="OQQ75_004205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416669.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
BASE COUNT          650 a          579 c          690 g          680 t
ORIGIN      
        1 gcgaatattg atgtcgccgg atattcacat gaatcattaa attatgcgga ttcaaatcca
       61 ggtaaaataa aatttacgcc tggtggagtc gggcgcaata ttgcacaaaa cctggcgttg
      121 ctggggaaca aagcctggct actgagcgcc gtaggcagtg acttttatgg tcaatcgctg
      181 ctaacgcaaa ccaatcaatc tggcgtttat gtcgataaat gcctgattgt gccgggagaa
      241 aatacgtcta gttatttatc attactcgat aataccggtg aaatgctggt tgctataaat
      301 gacatgaata ttagcaacgc tattacagct gaatatctcg cacagcaccg tgaatttatt
      361 cagagggcaa aggtcattgt cgcggactgt aatatcagtg aagaggcact ggcatggatt
      421 ctggataatg ccgccaacgt acccgtattt gtcgatccgg tttccgcatg gaaatgtgtc
      481 aaagtgcgcg accgtctaaa tcagatccac actctgaagc caaaccgcct tgaagcggaa
      541 accctgagtg ggattgcgct gtcagggcgt gaagatgtgg caaaagttgc tgcctggttc
      601 catcaacatg gcctgaaccg actggtattg agcatgggcg gcgacggcgt ttattacagc
      661 gatatcagcg gtgaaaatag ctggtctgcg ccgatcaaaa ccaatgttat taatgttacc
      721 ggagcgggcg atgccatgat ggcgggactt gcttcgtgtt gggtagacgg aatgccgttt
      781 gccgaatctg ttcgtttcgc acagggatgt tcgtcaatgg cgctctcctg tgaatacacc
      841 aataaccccg atttatcgat tgccaacgtt atatcgttag tggagaacgc agaacgtctg
      901 aattaaaaat ttcccctgaa ttattacaaa tttccccgga agtgcaggac gctttaaaaa
      961 acaaaaaacc ggttgtggcg ctggaatcga ccattatttc tcacgggatg ccgttcccac
     1021 aaaatgccca gaccgcaatt gaagtagaag aaactattcg taaacagggc gctgtacctg
     1081 ccactatcgc cattattggc ggcgtgatga aagtgggttt aagcaaagaa gaatttgaat
     1141 tactgggtcg tgaagggcat aacgtgacca aagttagtcg tcgcgattta ccttttgttg
     1201 ttgccgccgg aaaaaatggc gcaaccactg tggcttcaac gatgattatt gcggcgcttg
     1261 ccggaattaa agtatttgcc accgggggaa ttggtggtgt gcatcgcggg gcggaacata
     1321 ccttcgatat ttctgccgat ttgcaagaac tggcaaatac taatgtcacc gttgtttgtg
     1381 ccggggcgaa atctattctc gatttaggat taaccactga gtatttagaa accttcggtg
     1441 tgccgttaat tggctatcag actaaagcgc tgcctgcgtt tttctgccgt accagctcgt
     1501 ttgacgtcag tattcgtctc gacagcgcca gtgaaattgc ccgtgcaatg gcggtgaaat
     1561 ggcaaagcgg gctgaacggt ggcctcgtgg tagcgaaccc gatcccggaa cagtttgcga
     1621 tgccggagga atctatcaat gcagccatag atcaagccgt cgccgaagcc gaagagcagg
     1681 gcgttattgg taaagaaagt acactgttcc tgctggcgcg cgttgctgag ctgaccggcg
     1741 gtgacagcct gaaatccaat atccagctgg tattcaacaa cgccattctg gcgagtgaaa
     1801 ttgccaaaga ataccagcgt ctcgcgggtt aatttccgac gggcagaaag ccgtcgcccg
     1861 tactcatcaa gcataccaaa acctggcgct gacgccgggt ttactggcat gaagggaaaa
     1921 tcattatgga tataatgaga agtgttgtgg ggatggtggt gttactggca atagcatttc
     1981 tgttgtcagt gaataaaaag agcatcagtt tgcgcacggt tggagccgca ctgctgctgc
     2041 aaatcgctat tggtggcatc atgctctact tcccaccggg aaagtgggca gtagaacagg
     2101 cggcattagg cgttcataaa gtgatgtctt acagtgatgc cggtaggcct tcatttttgg
     2161 ttcgctggtt gggccgaaaa tggatgtcct gtttgacggt gcgggtttta tcttcgcctt
     2221 tcgcgtactt ccggcgatta ttttcgttac tgcgctcatc agtctgctgt actacattgg
     2281 cgtgatgggg ctgctgattc gcatccttgg cagcattttc cagaaagctc ttaacatcag
     2341 caaaatcgaa tcttttgtcg cagtcacaac tattttcctc gggcaaaatg agatcccggc
     2401 gatcgttaaa ccgtttatcg atcgcatgaa tcgcaacgag ttgtttaccg caatttgtag
     2461 cgggatggcg tccattgctg gttcgatgat gattggttat gccggaatgg gcgtaccaat
     2521 tgactacctg ttagcggcat cgctgatggc gatcccaggt ggtattttgt ttgcacgtat
     2581 tcttagcccg gccaccgag
//
LOCUS       DAJVUP010000279         2593 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.286, whole genome shotgun sequence.
ACCESSION   DAJVUP010000279 DAJVUP010000000
VERSION     DAJVUP010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.286"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1007
                     /locus_tag="OQQ75_004206"
     CDS             <1..1007
                     /locus_tag="OQQ75_004206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415419.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1978323.1"
                     /translation="MWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHI
                     ATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAV
                     MVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTL
                     GQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVQVAILIMLPT
                     LGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTV
                     GIWCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK
                     "
     gene            complement(1008..1916)
                     /locus_tag="OQQ75_004207"
     CDS             complement(1008..1916)
                     /locus_tag="OQQ75_004207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1978324.1"
                     /translation="MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQR
                     LKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARV
                     AARIFLMPLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIG
                     PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNI
                     ILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQY
                     MSCGLRAFLDYVKTGQISQSQRHRPQ"
     gene            2016..>2593
                     /locus_tag="OQQ75_004208"
     CDS             2016..>2593
                     /locus_tag="OQQ75_004208"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H oxidoreductase"
                     /protein_id="HCS1978325.1"
                     /translation="MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYR
                     RNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYI
                     DRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED
                     ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMV"
BASE COUNT          670 a          551 c          637 g          735 t
ORIGIN      
        1 ttatgtgggt tgcttcacgc ggtatgaaat cgctgaaaat cgtcggttct gtggcaggga
       61 ttgcgatgtt tgttatgtcg ctcctgtatg tggcgatggc ggtaaccgcg cctgcgatta
      121 ctgaagtgca tattgcgacc acaaacatta cctgggaaac gttcattcct catatcgact
      181 ttacctacat taccactatt tcaatgctgg ttttcgcggt tggcggagca gagaagattt
      241 ctccttacgt taatcaaacg cgcaacccag gaaaagaatt tccaaaaggg atgttatgcc
      301 tggcggtgat ggttgcggtt tgtgccattc tgggctcact ggcgatgggg atgatgtttg
      361 actcgcgtaa tatcccggat gacttaatga ctaacggtca atattacgcc tttcagaagc
      421 tgggcgagta ttacaacatg ggtaatactt taatggtgat ttacgccatt gcgaataccc
      481 tgggacaagt agctgcgctg gtattctcga ttgatgcccc gcttaaagtg ctattaggtg
      541 atgctgacag caaatatatt ccagccagtt tatgtcgtac caacgcttct ggtacgcccg
      601 ttaatggcta ttttctgacc ctggtgcagg tggcaattct gattatgctg ccgactctcg
      661 gcatcggtga tatgaacaat ctctataaat ggctgttgaa tcttaactcg gtagtgatgc
      721 cgctgcgtta tttatgggta tttgttgcat ttattgcagt cgttcgcctg gcgcagaaat
      781 ataaaccaga atatgtcttt attcgtaata agcctctggc aatgaccgtc gggatttggt
      841 gttttgcctt taccgccttt gcctgtttga cggggatctt cccgaaaatg gaagccttca
      901 ctgcagagtg gaccttccag ttggcgctga atgttgcaac gccgtttgtg ctggtaggat
      961 taggactgat tttcccgctg ctggcgcgta aagcgaatag taaataatta ttgtggtcgg
     1021 tgacgctgac tctggctgat ctgacccgtt tttacataat cgagaaatgc gcgcaagccg
     1081 caggacatat actggcggtt tggataatag atctggaagc ctggacgctc tgtgctccag
     1141 tctcccagta cacattctaa acgaccagta tcaaggtact ccttgatctg ttcatagagc
     1201 agatacccga taccagcacc catcaaaacg gcctccagtt cagcatcaac atcatccaga
     1261 atgatatttc ctgcgacagc aatttccagc tcctttgcaa attgccagtg gaaaggtttg
     1321 ccgctgggat aacgaaaaac aacacattga tgattaagca gatcatgagg atggcggggt
     1381 ttgccatatc ttgcaaagta ctctggcgtt gctgctacac ataatttcac tggcgggccg
     1441 atcgccacgc tgatcatatc tttttcgacg atgccactaa gtcgaacgcc agcgtcaaag
     1501 ccctgttgga cgatatcgac aagagagtcg tcagttgtga gctcgacttt aatatcagga
     1561 tattcacgtg tgaaaccaac cagtaaaggc attaaaaata tacgtgcagc tacccgggcg
     1621 tcattgattt tgagcgttcc tgtcggtgtc agacgaaaat cattcatctc atctaacatg
     1681 atctgaattt cgtcgaaagc tgggcgcaat cgttcataga gattagaacc cgcttccgtt
     1741 aacgatacgc ttcgggttgt ccgattgaat aagcgaattt taagacgttg ttccagtgtt
     1801 ttaatactat ggctaatggc ggacgaggat aagcctaact catcgcccgc tgcacgaaag
     1861 ctttgattac gggccacggc aaagaaagtg gcaaagtcag acatattcat ccgcattagt
     1921 gaaaatcctt cattaactca tcctgaatca tcacgtttac aggattatgc cgcctgcgta
     1981 aagtgcgctc cagaacttaa cgtggaggta aaattatgca gtctgaacgt atttatttgg
     2041 tatgggccca tcctcgtcat gattcattga ccgcacatat tgctgatgcg atccatcagc
     2101 gggcaatgga gcggaaaata caggtgacgg aactcgattt atatcggcgt aatttcaacc
     2161 cagtgatgac gccggaagat gaaccagact ggaagaatat ggataaacgt tattctccag
     2221 aggttcatca gctttattca gagctgcttg aacatgacac gttagtggtg gtttttcctc
     2281 tctggtggta cagcttcccg gcaatgctaa aaggatatat tgacagagta tggaataatg
     2341 ggctggctta tggagatggg cacaaattac cattcaataa agttcgttgg gtggcgctgg
     2401 ttggaggaga caaagaatca tttgtccaga tgggctggga aaaaaatata agcgattatt
     2461 tgaaaaatat gtgcagttat cttggtattg aagatgccga tgtcactttc ttgtgtaata
     2521 cagtggtatt cgatggggaa gaacttcatg cgagctatta tcagtcgtta ttatctcagg
     2581 tacgggatat ggt
//
LOCUS       DAJVUP010000280         2570 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.287, whole genome shotgun sequence.
ACCESSION   DAJVUP010000280 DAJVUP010000000
VERSION     DAJVUP010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.287"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..2261
                     /locus_tag="OQQ75_004209"
     CDS             <1..2261
                     /locus_tag="OQQ75_004209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1978326.1"
                     /translation="VSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDD
                     SVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYS
                     FTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSYLQRDI
                     KALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVT
                     IRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQR
                     PRHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGI
                     GGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDG
                     YFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVG
                     VSGQQWGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQ
                     HEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYN
                     YGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVIPYLTT
                     YQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPL
                     PFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPDSEP
                     TTSVLQGTAQCH"
     gene            2272..>2570
                     /locus_tag="OQQ75_004210"
     CDS             2272..>2570
                     /locus_tag="OQQ75_004210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1978327.1"
                     /translation="MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVT
                     VNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKL"
BASE COUNT          712 a          624 c          602 g          632 t
ORIGIN      
        1 aggtttcaca gaaaaaaatt acatttaccg ccaatgcaga gcaacttctg cagccacagt
       61 ttacggtaga acaactacgt gagctgggta ttaaggtgga tgaaatcccg gcgctggctg
      121 aaaaagatga cgatagcgtg atcaactcgc ttgaacaaat cattcccggt acagctgctg
      181 aatttgattt caatcatcag cgacttaatt tgagcattcc ccaaattgca ctgtaccgtg
      241 atgcaagagg ttacgtctcc ccttctcgtt gggacgatgg tataccaacg ctgtttacca
      301 actactcgtt tacaggttct gataaccgtt accgccaggg caatcgtagc caacgacagt
      361 acctgaatat gcaaaatggt gctaattttg gcccctggcg attacgtaac tattctacgt
      421 ggacacgcaa cgatcaggcg tcaagctgga acactatcag tagttattta caacgtgata
      481 tcaaggcgtt gaagtctcag ttgcttctgg gagaaagcgc caccagcggc agtatttttt
      541 ccagctacac ctttactggc gtgcaactcg cttccgacga taatatgttg ccaaacagcc
      601 agcgcggatt tgccccaacg gtacgcggta tcgcaaacag tagtgcaatc gtgactatca
      661 ggcaaaatgg ttatgtgatc tatcaaagca acgtgccagc gggtgccttt gaaattaacg
      721 atctctaccc ctcttccaac agcggcgatt tagaagtcac gattgaagaa agtgacggta
      781 cacaacgtcg ctttatccag ccttattctt cattacccat gatgcagcga cctaggcatc
      841 taaaatatag cgcgaccgct ggacgctatc gcgctgatgc aaacagtgat agcaaggaac
      901 ccgaatttgc tgaagccacg gcaatatatg gtttgaataa tacttttacg ctgtatggcg
      961 gcctgctcgg ttctgaagat tattatgcgc tggggatcgg tatcggcggc acacttggcg
     1021 cactgggcgc gttgtcgatg gatatcaaca gagctgacac ccaattcgat aaccagcact
     1081 cttttcatgg ctatcaatgg cgtacgcagt acatcaaaga tatcccggaa accaacacca
     1141 atatcgctgt tagctactat cgctatacca acgatggcta ttttagtttt gatgaagcca
     1201 atacccgcaa ttgggactat aacagtcgcc aaaaaagtga aattcaattc aacatcagcc
     1261 agacaatatt tgatggggta agtctgtatg cctccggttc gcagcaagac tattggggca
     1321 ataacgagaa aaacaggaat atctctgttg gggtttccgg ccagcaatgg ggaattggtt
     1381 acagcctgaa ttatcaatac agccgctaca ctgatgaaaa taatgaccgt gcactctctt
     1441 tgaatctcag tattccgtta gaacgctggt taccgcgtag ccgggtttcc tatcagatga
     1501 ccagccagaa agatcgccca acccaacatg aaatgcgtct tgatggctca ctgctggatg
     1561 atggtcgcct gagctatagc ctggaacaaa gtctggatga cgataacaac cataacagta
     1621 gcctgaacgc cagttaccgt tcaccttatg gaaccttcag tgccggatac agttacggta
     1681 atgacagcag ccaatacaat tacggcgtta ccggcggcgt ggttatccat cctcatggcg
     1741 tgacgctctc gcaatatctg ggcaacgctt ttgcgcttat cgatgctaac ggggcttctg
     1801 gcgtgaggat acaaaactat ccggggattg ctactgatcc ctttggctat gcagtgattc
     1861 cttatctcac gacttatcag gaaaaccgtc tctcggtaga tactacgcag ctgcccgata
     1921 acgtcgatct tgaacaaaca acacagtttg tggtgcccaa cagaggtgca atggtagcgg
     1981 cgcgtttcaa cgccaatatc ggttatcgcg tacttgttac agtcagcgat cgcaacggta
     2041 aaccgttgcc ctttggcgct cttgccagca acgatgatac ggggcaacaa agtatcgtcg
     2101 atgagggcgg catactatat ctctctggga tatcgagtaa atcacaaagc tggactgtac
     2161 gctggggaaa tcaggcagat caacaatgtc agtttgcttt taatacaccg gattcagaac
     2221 caacaacctc tgtattacaa ggcacagcgc agtgccatta aggataaaaa aatgaaaaga
     2281 gcgcctctta taacaggact tttgttgata tccacatcct gcgcttatgc ctcctcagga
     2341 gggtgtggag ccgacagcac tagcggtgcg acaaattaca gcagtgtggt tgatgatgtt
     2401 acggtgaacc agacagataa cgtgacagga cgggagttta cctctgcaac gctaagtagc
     2461 actaactggc aatacgcctg ttcctgctct gcgggtaagg cagttaaact tgtctatatg
     2521 gtcagccccg tacttaccac cactggacat cagacaggat attacaaact
//
LOCUS       DAJVUP010000281         2413 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.288, whole genome shotgun sequence.
ACCESSION   DAJVUP010000281 DAJVUP010000000
VERSION     DAJVUP010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.288"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..449
                     /gene="yeeE"
                     /locus_tag="OQQ75_004211"
     CDS             <1..449
                     /gene="yeeE"
                     /locus_tag="OQQ75_004211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transport protein YeeE"
                     /protein_id="HCS1978328.1"
                     /translation="VLIGLIALLAWPLSEATGRMFGLGITSPTANILQFLVAGDVKYI
                     NWGVFLVLGIFVGSFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAGGCSIGN
                     GLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN"
     gene            463..690
                     /locus_tag="OQQ75_004212"
     CDS             463..690
                     /locus_tag="OQQ75_004212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HCS1978329.1"
                     /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE
                     AIPQWAAEEGHAITDYQQIGDAAWSITVQKA"
     gene            complement(733..2157)
                     /gene="sbcB"
                     /locus_tag="OQQ75_004213"
     CDS             complement(733..2157)
                     /gene="sbcB"
                     /locus_tag="OQQ75_004213"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HCS1978330.1"
                     /translation="MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGE
                     PEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYN
                     NVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
                     PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA
                     LIDVPQMPPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSD
                     TLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLK
                     ILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPA
                     LDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLV
                     QQYADDKEKVALLKALWQYAEEIV"
BASE COUNT          581 a          576 c          621 g          635 t
ORIGIN      
        1 ctgtactcat cggtttgatt gcgcttttag cctggcccct gagtgaagca accggacgca
       61 tgtttgggtt aggaatcact tccccaacgg ccaatattct gcaatttctg gtcgcgggtg
      121 acgtgaaata cattaactgg ggcgttttcc tggtgttagg gatcttcgtg gggtcattta
      181 ttgcagccaa agcgagccgt gagttccgcg ttcgcgcagc tgatgcacaa acaacattac
      241 gtagcgggtt aggtggtgta ctgatgggct tcggtgccag tattgcaggt ggttgctcta
      301 tcggtaatgg actggttatg actgcaatga tgacctggca gggctggatt ggccttgtat
      361 ttatgattct cggagtctgg actgcatcct ggcttgtgta tgttcgaccg cagcgtaagg
      421 cgcgactggc gactgctgcg gcaaattaag taaggtgtaa agatggcgat taaaaagctg
      481 gatgtggtga cgcaggtctg tccgtttcca ctcatagaag caaaagcagc actggcagaa
      541 atggccagcg gcgatgagtt ggtaattgag tttgattgca cccaggcaac tgaagcaatc
      601 ccacagtggg cggcagaaga aggacatgcc atcaccgatt atcagcagat tggcgatgca
      661 gcgtggagca tcaccgttca aaaagcctga ctcaacattg tcctccgccg taccagcggc
      721 ggaggcttca aattagacga tctcttccgc gtactgccaa agtgctttta acagcgccac
      781 tttttctttg tcatcggcat attgttgtac cagcatctgc aattcatcag cataaccctg
      841 caaaaactct ggcgtgaata cctggcggcg gtgctccagc cagcgttgct gctcggcata
      901 atccagcgtc cccgggaagt tgcgtgcccg ataattgaac aacagctttt caatccgttt
      961 atcaacaaaa gtgatatcca gtgccggtaa attacgtggc tcggtttcca gcacaatttt
     1021 cattgctgca cgatctgcgt cactgaaaaa gccgttataa agctgtgcat ccacgttatc
     1081 tgtaggcgta aacggttcgg cttccgcgaa tatcgccacc actttttcac gcacttgcgg
     1141 attttcacgc agaattttca ggttatcgag gcaatgctga cgattaattc ccagtcggtc
     1201 ggcatcttcc gggcgtagcg tattcgcctg ggccagcacc ggacatttat tgatgtgcac
     1261 cagcttaacc ggaacggcgg cgttatcgcc aagatcggtt tttgcggtat ataaacgctc
     1321 gcgcaatgtg tcgctatcca gttccagtaa tggcgaaatg tctcctgcca aatccaccat
     1381 aattacagca ttgcgatttt caggatgcca cgccagcggt gccacccagc tggtattgcc
     1441 gcgccatgcc ccaaacattc cggaaacgtg aaccaggggg ggcatctgcg gaacatcaat
     1501 caacgccatc agtttgtgtt tattacgatg ggtaaagaga taatcaaaca ggcgtggctg
     1561 acgcgttttt accagtttcg ccatcgcaat agtggcgtac acatcagcca tcgcatcgtg
     1621 ggcgttgcta tgttcaatac cattcgcttt ggttaaatgc tcaaggcgaa agctcggtag
     1681 accgtcatca ttttcaggcc agtttattcc ttccgggcgc agggcataac aggcacgcat
     1741 aacatccaac aaatcccagc gcgagttatc atgctgccag ctccaggcgt aaggatcgta
     1801 gaaattacga taaaaaacgt tgcgtgtgac ttcgtcgtcg aaacgcacat tgttgtagcc
     1861 cagaatacag gtcttcggta cggtaaaaag cgagtgaata cgggcggcaa acgcggcttc
     1921 gttttctcct ttcgcccgtg cttcctgcgg ggtaataccg gtaattaata ctgctccagg
     1981 ctggggtaaa tagtcatccg cgggcttgca gtaaaagact tcgggttcgc cgatgacatt
     2041 gaattcgcta tcggtgcgaa tggctgcgaa ctgtgcaggg cgatctaacg cggggtgcgt
     2101 gccaaaggtt tcgtaatcgt gaaagaggaa ggtaggttgt ttatctgtgt ctgtcattgt
     2161 ctagcattgt ccactgtagt taattaactg tctgttataa ctcgaaaaac aaccattttt
     2221 tcacctgagt atgtctacga acgtcaaata tagttgttta ctgtgcgctg ttgtccatgt
     2281 gatattgtgt accagatgtg taccaaacca ttatttctga gcgtaccaaa tattatttat
     2341 ggctataagc gacacaaaac tgcgtagtat ttatggtaaa ccatattcgg gcccacaaga
     2401 agtggctgat gcc
//
LOCUS       DAJVUP010000282         2346 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.289, whole genome shotgun sequence.
ACCESSION   DAJVUP010000282 DAJVUP010000000
VERSION     DAJVUP010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.289"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..758
                     /locus_tag="OQQ75_004214"
     CDS             <1..758
                     /locus_tag="OQQ75_004214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HCS1978331.1"
                     /translation="AGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTL
                     LVQQQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLE
                     DESRMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQ
                     GWQEYCEYLHHGLSAIKRRLGLQRYNELAAQLDTALTTQLTTGSTDGHLAWLVPLLKE
                     YYDPMYRYQLEKKAEKVVFRGEWAEVAEWVKAR"
     gene            874..1239
                     /locus_tag="OQQ75_004215"
                     /pseudo
     CDS             874..1239
                     /locus_tag="OQQ75_004215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014543172.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(1801..2250)
                     /locus_tag="OQQ75_004216"
     CDS             complement(1801..2250)
                     /locus_tag="OQQ75_004216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001348602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978332.1"
                     /translation="MLAISSNLSKMIIFIFAIIIIVVLCVITYLYLYKDESLVSKHYI
                     NYMAIPENDGVFTWLPDFFSHVAVDISIYTNVEDDYFFSYFSLTNDDGGRFKKTLTVR
                     AREQVAKIVSKNDPDTKKVWCKYGKIPGQGDGVNLFLLVKLMLRIIL"
BASE COUNT          635 a          524 c          531 g          656 t
ORIGIN      
        1 cagcggggat tgattatccg ctggtggaag gcggttataa ggcactgcgc cagaccgcga
       61 ttcaggcgac tattgaactg gcacaaaaac cgatagtgct gattggcggt tgtaccggca
      121 gcggtaaaac gctgttagtg cagcaacagc cgaacggtgt cgatctggaa gggctggcgc
      181 gtcatcgcgg ttcggcgttt ggtcgcacgt tacaaccaca acttagccag gcgagttttg
      241 aaaatctgct ggctgccgaa atgctaaaaa ccgacgcccg tcaggatttg cgcctgtggg
      301 tgctggaaga tgaaagccgg atgatcggtt cgaatcacct gccggaatgt ctgcgcgagc
      361 gaatgactca ggcggcgatt gcggtggtag aagatccgtt tgagatccgt cttgaacgcc
      421 tgaacgaaga gtatttcttg cgtatgcatc atgattttac ccacgcgtac ggcgacgaac
      481 agggctggca ggaatattgc gaatacctgc atcacggact ttcggctatt aagcgtcggc
      541 tggggttaca gcgctataac gaactcgctg cccagctgga tacggcgctg acaacgcaac
      601 tcaccaccgg cagcaccgac ggtcatctgg cctggctggt gccgttactt aaagaatatt
      661 acgacccaat gtatcgctat cagcttgaga aaaaagcgga aaaagttgtc tttcgcggtg
      721 agtgggcgga agtggcggaa tgggttaagg cgcggtaatg agggacgtat ttgtattagt
      781 cgcgacttga tctgacacat ggccttgaaa ggttgagagt taccggtttt gatatgagtg
      841 tcgaatcctt atccaaaaca agaggtaact ctcatgcttc atactgccaa tcccgtcatc
      901 aaacacaaag ccggtttgct caatctggct gaagaactca gcaacgtatc aaaagcctgt
      961 aaaatcatgg gcgtttcgcg tgatacgttt tatcgttacc gcgaactggt cgctgaaggc
     1021 ggtgtggatg cgcagattaa tcgtagtcgc cgcgctccta accttaagaa ccgtaccgat
     1081 gaggcaactg aacaggctgt tgttgattac gccgtcgctt tcccgacaca tggtcagcac
     1141 cgggccagca acgagctgcg taaacagggg ggttttatct ccgacagtgg tgtccgttct
     1201 gtctggttac tccataacct tgagaatctc aaaagacgat actgaacaaa ttttatcagg
     1261 tgacgttccg taaaaagttg tatggagttc tcgatgcagt cggcgcgact atcagtaccc
     1321 ccgctgaacc ctggactatc gggccgccgt actggggcat gtcaccctgg cgtgccgctg
     1381 gttttccgct aatggtttat ttcctctttc tttcccggca agaatttatt ttaatccgga
     1441 aggattattt attttcagat agggactcac attaaacacg taacatttta attaatgcat
     1501 ggctgaatat gtattacaca atgtcagata tcgtaaaaga ccagtgcaat tctatgtaaa
     1561 ctctctgact gttcatttta tttgttgttt cagggtcgga actcaccctc aataaacaac
     1621 tgaatacgag tagatattca tcgtctgagc tatatggctt tacacaatag ccgacatgtc
     1681 ttttctcagt caggaatttt acttttcctc actacgaagt tgacgacttc gatatgggat
     1741 agactcttaa ttcaagcaat tactctgcac aagcatcagg caatccagct ccaatatttg
     1801 ttataaaata atgcgtaaca ttaatttcac caacaaaaaa aggtttacac catccccttg
     1861 ccctggtatc ttaccatatt tacaccacac tttttttgta tctggatcat tctttgatac
     1921 gattttcgcc acttgttccc tggccctcac tgtcaatgtt ttcttaaacc tacccccatc
     1981 atcatttgtt agggaaaaat aagaaaaaaa ataatcatct tctacatttg tgtatattga
     2041 tatatccacc gctacgtgcg aaaaaaaatc tgggagccat gtaaaaactc catcattttc
     2101 tggtattgcc atatagttta tgtaatgttt acttacaaga gattcatctt tgtataaata
     2161 aagataagta attacgcata aaacaacaat gattataata gcaaaaataa atattatcat
     2221 ctttgataga ttacttgaga tagccagcat cttgtaaagc ctttatcgtt tttttatgct
     2281 ctggattaat ataatcacta catctatctg agcaatctgt tgttgatgga catgtcaacc
     2341 catggt
//
LOCUS       DAJVUP010000283         2302 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.290, whole genome shotgun sequence.
ACCESSION   DAJVUP010000283 DAJVUP010000000
VERSION     DAJVUP010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.290"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ75_004217"
     CDS             complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ75_004217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH9.8"
                     /protein_id="HCS1978333.1"
                     /translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
                     EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
                     YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
                     NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
                     HALQALQRLTSSPDYHGP"
     gene            complement(971..1066)
                     /locus_tag="OQQ75_004218"
                     /pseudo
     CDS             complement(971..1066)
                     /locus_tag="OQQ75_004218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="OQQ75_004219"
     CDS             complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="OQQ75_004219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858358.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin CcdB"
                     /protein_id="HCS1978334.1"
                     /translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
                     KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
     gene            complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="OQQ75_004220"
     CDS             complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="OQQ75_004220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin CcdA"
                     /protein_id="HCS1978335.1"
                     /translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
                     QAENQQGMAEIARFIEMNGSFADENRDW"
BASE COUNT          617 a          490 c          542 g          653 t
ORIGIN      
        1 gtgggccgtg gtagtccggc gaagaggtta atctttgcag ggcttgcaga gcatgggatg
       61 ataatgggtt atcactaata tgtattgaac attcattcct cagattaaga atgctttccg
      121 ggatatgact tatctgattt ctatcaaaaa aatactctct gacaacggga ttatttccct
      181 cagaaaatgc tggtagctca gtgaggaaat tacgggtcgc tctgagattt ttaagagcct
      241 gtgggagcga tggtaaggag actatttcgt tatagctgat attcatagtc aataacgaat
      301 cgggtaaagc tggcaggttt tccagctcat tgtgttgtac ctgaagtgac tccagcgcag
      361 gaggtagcac gggcaattct gataatttat tgctggcgga atataatttt tttagcgtaa
      421 caggcagttc aggtaggtta gttaattgat tatatgatac attgagcagc gttatctgag
      481 ctggtaagtt gtcaggtagc gaggacagat ttaaacggtc cagtcgaagt tcatcggaat
      541 tattgataag acattcttta agtcgggaga cagcctcatc acgctcttca ccggggagcg
      601 cttgtttttc ccatttatcc catgctgaaa agtaatcagc atatgtaccg gaaatagtgt
      661 tataaaaaga attttggggc aatgaaaagt tattatttat cggtaacatg atgggcatcc
      721 agttaaagcc ggtggacaaa tggctttgtt aaaagaaata agcaggagtt tttatgaagt
      781 tcattccatg aaatgaactt cagcactttt ttattataat aaggataaac aaaattggct
      841 gtaaaaaaac gatactgttt cagttaaccg tgaatggcct gtttgcaccg tattgttctt
      901 gtttttcggt tagttaaaca tcgtacttca tatttgaacg gtaagcggct cgtcagaacc
      961 gtattgatat ttactgagag gtcagatcaa ctttccaggg caacagatcg cgtacccggt
     1021 ttgccggcca gtcttggata tgctcaatga cgtaacgcag ccattttgtc aacgccacga
     1081 tttttgaccc tagcctgaca tttatattcc ccagaacatc aggttaatgg cgtttttgat
     1141 gtcattttcg cggtggctga gatcagccac ttcttccccg ataacgaaga tcggcacact
     1201 ggccatatca gtggtcatca tgcgccagct ttcatccccg acatgcacca ccgggtaaag
     1261 ctcacgggag actttatctg acagcaggcg ggcactggcc agggggatca ccatccgtcg
     1321 tccgggcgtg tcaataatgt cactctgtac atccacaaac agacgataac gactctctct
     1381 tttataggcg taaaccttaa actgcatttc accagtccct gttctcatcg gcaaaagagc
     1441 cgttcatttc aataaaacgg gcgatctcag ccatcccctg ctgattttca gcctgccagc
     1501 gttccgcacg cagacggcgg gcctcttttt gcatggccgt atttaccagg cctgagatat
     1561 tcacgtttgc ggatttaagt aactgatagc tgtcactgtc tatagtgaca gtaatacgct
     1621 gcttcatgat aagccctcaa aaacatactt atgatatgta tatgagtata tattaatggt
     1681 acaaaccatc aatatccata aaaagtacac cattaattca ctataagttt ttaatacaat
     1741 tttttctgct gcgatttttt tatacgataa ttagcatact tataacaccg taagtaaatt
     1801 acatgaaagc aggcacagcg tgatccgatt tttctgcgta taacgatttt ccggaagtgt
     1861 aatacggttg cgccccgggc cgggcaccct tttctgttgt tgtgtacggg cccacagaga
     1921 atggtaccgg aggcgggctc agaagtactg agtcgggtga tcgcgtcagg ccgcgaagta
     1981 ctgacacggg tattggtgac tggtgatgaa gtactgcccc gggtatgatt tcaggctgat
     2041 tcaggttctg attctctgtc agtccgcgtg gttgctggcc tggctgattt cctgttgtca
     2101 ggcgttcaac aaccgactgc aggttatagc ccggttcacg aaccacggca gcctggcggc
     2161 tgcaaatcgg ggtgtggcag aatatgagct ttcagagtaa ccatccagaa tgagttccca
     2221 tgtcacacaa cctggagcac cagaaagtcc acaccagaat ggtgaaagag gttctgaaag
     2281 ccgtcgccag agccaataat ca
//
LOCUS       DAJVUP010000284         2288 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.291, whole genome shotgun sequence.
ACCESSION   DAJVUP010000284 DAJVUP010000000
VERSION     DAJVUP010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.291"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..711)
                     /locus_tag="OQQ75_004221"
                     /pseudo
     CDS             complement(1..711)
                     /locus_tag="OQQ75_004221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417258.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgcG family protein"
     gene            complement(725..865)
                     /locus_tag="OQQ75_004222"
     CDS             complement(725..865)
                     /locus_tag="OQQ75_004222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978336.1"
                     /translation="MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFI
                     QI"
     gene            1004..1675
                     /gene="queE"
                     /locus_tag="OQQ75_004223"
     CDS             1004..1675
                     /gene="queE"
                     /locus_tag="OQQ75_004223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HCS1978337.1"
                     /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW
                     EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL
                     PLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
                     PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK
                     YLNIA"
BASE COUNT          694 a          429 c          481 g          684 t
ORIGIN      
        1 gaaagtaaaa aagaaggaaa atacagcaat ggaaaaaatt ttatcggaga acaggaataa
       61 atctaaaaga tagattgctg aaatacagac tccactttta catgcgcgac aaaaattact
      121 gccttgatga aaaaaccaga aagggaagaa catcactgca aatacccaaa aaatagcaaa
      181 gtaataatga tcactggaag acgctgattc actttctgaa ggattagtcg gatattggtg
      241 ttgtgaagtg agttggttat tcaaagcgtt tatagctagc tctaatccct gagcaaattt
      301 ttgttgttta aatgcgggta tcatgttgct acggatgata tctccagcca gagcatcggt
      361 taccttttct tccagcccat aacctacctg gatgcggaca gtacgatctg accaggcaac
      421 aatgatcagt atcccatcat tacgtttggc atctcctaaa cgccaattgt caaaaactct
      481 tgtagcatat tgttcaattg tctcgtcttt ggttgtggga acaattaata cagcaatttg
      541 cacttgggta ttattgaaaa tagattctaa cttgtgcgtc agttctttct tttcttgtga
      601 gtttaagcta ctcgtaagat ccgtaacttg ttactgtaat tgtgggacaa tagttggttg
      661 ggctgcaaca aaggaacata cgaaagtgaa cattagtatg aaatagcgca ttataaattt
      721 ctcattaaat ctggataaat aaattgacgg cggcatcggt aattttagac tcgttatcat
      781 taaaaactaa tacagaaaaa ataaatataa ttttggtgaa tgttttgaca tgattaaatc
      841 cattttcttt attttcttct gacataatac gttactccct ttaattatta acgatatgtt
      901 tcgcattttt ctttaaatct gcatgtaaca gaatgttaat aaggcatgat tgttgcggca
      961 ggatctgcaa taattaacaa ttatccactt cacagagaat gctatgcagt acccgattaa
     1021 cgagatgttc cagaccctgc aaggtgaggg ttactttacc ggcgtccccg ccatttttat
     1081 tcgtttacag ggatgcccgg ttggctgtgc ctggtgcgac accaaacaca cctgggaaaa
     1141 gcttgaggat cgggaagtct cccttttcag cattctggcg aagaccaaag agagtgataa
     1201 gtggggggcg gcgagcagtg aagatttgct ggctgtcatt ggtcggcagg gatataccgc
     1261 gcggcatgtg gtgattacgg gtggtgagcc ttgcattcat gatttgctgc cactgactga
     1321 cctgctcgaa aagaacggtt ttagctgcca gatcgaaacc agtggaactc atgaagtacg
     1381 ctgcacaccg aatacctggg ttaccgtatc gccaaagctg aacatgcgcg gcggctatga
     1441 cgtgttgtca caggcactgg agcgagccaa cgaaatcaag catccagtgg ggcgcgtacg
     1501 cgatattgaa gcactcgatg aactattggc aacgctgacc gatgataaac cgcgagtcat
     1561 tgcactgcag ccgattagcc aaaaggatga tgccacacgt ttgtgcattg aaacctgcat
     1621 tgcgcgtaat tggcgtttgt cgatgcaaac acataaatat ctaaatattg cctgattaaa
     1681 catttataag cgttataaat gggtggaacc tgtaaagact tctactcatt tatattgttt
     1741 gtcgcctctg aaaactcctc cattttaccc atccagggct aatcattagc attatctaca
     1801 aattctgtgg cattaatttt tcgctggagt gaaaattatt gcggtaaagt ttggtagatt
     1861 ttaatttgta tagagttatt ttaaatattt acctttttaa tcaatgaatt aagtactctt
     1921 taacataatg gatgtgttgt ttgtgtgata ctgtaaagtt ggtagattgt tactggctta
     1981 aaaaatcatt aattaataat aggttatgtt tacagagttc cccgcgccag cggggataaa
     2041 ccgagttaca accctttgag gcgggcaaga gctgggagtt tcccgcgcca gcggggataa
     2101 accaccatat aacccgttat ctctttctca agtttttata ttagcagtac ttgtaataag
     2161 caacatatcc acgtaacacc tcatgttcaa aatagttctc catgccagag aggttcacaa
     2221 ttatcgatac aaaaaattaa atttaatcaa agtgttattt gtatgattct taaatcgtta
     2281 agaaattt
//
LOCUS       DAJVUP010000285         2282 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.292, whole genome shotgun sequence.
ACCESSION   DAJVUP010000285 DAJVUP010000000
VERSION     DAJVUP010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.292"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..184
                     /locus_tag="OQQ75_004224"
     CDS             <1..184
                     /locus_tag="OQQ75_004224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HCS1978338.1"
                     /translation="IYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFM
                     ETVSPFPGGKHGLAKV"
     gene            complement(204..455)
                     /locus_tag="OQQ75_004225"
     CDS             complement(204..455)
                     /locus_tag="OQQ75_004225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978339.1"
                     /translation="MPGTTTAMSINFIGITARTMNSNGSHGKPQIPVDYQKLLSIEDI
                     TFCRNRWGNIGENALRRVAVGKKLSFFGSDRGGENAAII"
     gene            378..1068
                     /locus_tag="OQQ75_004226"
                     /pseudo
     CDS             378..1068
                     /locus_tag="OQQ75_004226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(1085..1264)
                     /locus_tag="OQQ75_004227"
                     /pseudo
     CDS             complement(1085..1264)
                     /locus_tag="OQQ75_004227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1594..>2282
                     /gene="ipaH7.8"
                     /locus_tag="OQQ75_004228"
     CDS             1594..>2282
                     /gene="ipaH7.8"
                     /locus_tag="OQQ75_004228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH7.8"
                     /protein_id="HCS1978340.1"
                     /translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
                     GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPKHISALIVENNKLTSLPKLPAFLKEL
                     NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
                     FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
                     SFSQLDSSYRI"
BASE COUNT          676 a          514 c          429 g          663 t
ORIGIN      
        1 catttatcag ccggtttact cgccatgggt gaatcatgtt gaacggctat ggcaggcact
       61 tcacgacaca ataacgcgta atcatcagtg ccgctcaatg tggcaactgt tgaaaaaagt
      121 tcgccatttt atggaaaccg tcagcccatt ccccggaggc aaacatgggc tggcaaaagt
      181 gtagcggtat taagcgcagc tatttagatt attgccgcat tttctccacc acgatcagag
      241 ccgaaaaaag ataatttttt tccaactgcc acccggcgta atgcgttttc accaatgtta
      301 ccccacctat tgcggcaaaa ggtaatgtct tcaatcgata gaagtttctg gtaatctact
      361 ggtatttgag gttttccatg actaccgtta ctgttcattg tccgcgctgt aattccgatg
      421 aagtttatcg acatggccgt agttgttccc ggcatgagcg tttccgttgt cgctcatgta
      481 aacgtgtttt ccagctcact tactcttatg aagccagaaa actcggcgtt aaggagcaga
      541 tcgttgaaat ggcacataac ggcgcagggg gctgttatac cgccagaaca ctgaaaatcg
      601 gcatcaatac cgtcatacgg acattaaaaa gctctcgccc cggcggataa catctgcgcc
      661 agtcgctcac gctgatgttg cccttatctg tgaacttgat gagcagtggc gcttcgttgg
      721 cagcaaggcg caacaacact ggccctggta tgcgtacaac actaaaactg gcggtgtgtt
      781 ggcttacact tgcgggccac ggaatgatga gacctgtcgg gaactgttag ccctgttgac
      841 tccgttctgt atcggcatgg tgaccagcga tgactggggc agctacgcca gagaagtgcc
      901 ggaggagaaa cacctgaccg gcaaaatctt cacgcaacgt atgaacgtaa caacctgacc
      961 ctccgccccc gcatcaagcg gctggcacgt aaaacaatct gcttctcgcg ttccgtggaa
     1021 atccacgaaa aagtcatcgg ttccttcatt gaaaagcaca tattctaatg attggaagta
     1081 ctacccggca aaactcattc agtgcattcc agtgattcag gatatagttg aacgccttta
     1141 ccatttcagc atggtttgac aaagttttcc tctggagctt tatccagtca tacaaggact
     1201 tcattcgcgg cacacatttc tcctgcctta ccgcaagccg tttttctgcc ggcctccctc
     1261 gtattaaatg tgtatcgttt ttttacagta attttaattt atcattctat aataggaata
     1321 aatgagcttg gctaaaatat gatataaaac aaatatactt actcggatta catttccttg
     1381 ctcactggaa tgttgaattc agtgttatta ttgactgcag tcacaataaa aaaaagaatt
     1441 ccatagaaaa cctcaacaaa taaattacaa ctaacttctg ttatgtgtaa aatggaaact
     1501 attaaaactt aatatcgaaa atggtaagtg aaatttgtat aaatatacaa ttttaaatat
     1561 ttattctcac aaatataagg ttgccctagc attatgttct ctgtaaataa tacacactca
     1621 tcagtttctt gctccccctc tattaactca aactcaacca gtaatgaaca ttatctgaga
     1681 atcctgactg aatgggaaaa gaactcttct cccggggaag agcgaggcat tgcttttaac
     1741 agactctccc agtgctttca gaatcaagaa gcagtattaa atttatcaga cctaaatttg
     1801 acgtctcttc ccgaattacc aaagcatatt tctgctttga ttgtagaaaa taataaatta
     1861 acatcattgc caaagctgcc tgcatttctc aaagaactta atgctgataa taacaggctt
     1921 tctgtgatac cagaacttcc tgagtcatta acaactttaa gtgttcgttc taatcaactg
     1981 gaaaaccttc ctgttttgcc aaaccattta acatcattat ttgttgaaaa taacaggcta
     2041 tataatttac cggctcttcc cgaaaaattg aaatttttac atgtttatta taacaggctg
     2101 acaacattac ccgacttacc ggataaactg gaaattctct gtgctcagcg caataatctg
     2161 gttacttttc ctcaattttc tgatagaaac aatatcagac aaaaggaata ttattttcat
     2221 tttaatcaga taaccactct tccggagagt ttttcacaat tagattcaag ttacaggatt
     2281 aa
//
LOCUS       DAJVUP010000286         2276 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.293, whole genome shotgun sequence.
ACCESSION   DAJVUP010000286 DAJVUP010000000
VERSION     DAJVUP010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.293"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..350)
                     /locus_tag="OQQ75_004229"
     CDS             complement(<1..350)
                     /locus_tag="OQQ75_004229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing protein"
                     /protein_id="HCS1978341.1"
                     /translation="MKIKSISKAVLLFALLTSTSFAAGKNVNVEFRKGHSSAQYSGEI
                     KGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLP
                     ASGKYELRVLQTRN"
     gene            592..885
                     /locus_tag="OQQ75_004230"
     CDS             592..885
                     /locus_tag="OQQ75_004230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HCS1978342.1"
                     /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMIL
                     PLDGRKKLVNADIEKVKLALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK"
     gene            957..1616
                     /locus_tag="OQQ75_004231"
     CDS             957..1616
                     /locus_tag="OQQ75_004231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HCS1978343.1"
                     /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF
                     IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL
                     TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLGLSVNGEQRQQG
                     TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV
                     L"
     gene            1708..2154
                     /locus_tag="OQQ75_004232"
     CDS             1708..2154
                     /locus_tag="OQQ75_004232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309703.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HCS1978344.1"
                     /translation="MNDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIY
                     FTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLAEGKDL
                     PVWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ"
BASE COUNT          592 a          491 c          587 g          606 t
ORIGIN      
        1 tcgtttcggg tttgcagcac tcgcagctca tatttgccag aagcagggag tgagtattgt
       61 ccgtgactat cgagttctgg ggaatatctg gataaatcaa cagaatcatc gattcctggc
      121 ccgaagaggt aagtatcagc gccttcatta gagatactca catgtacttt ctgacctttt
      181 ttggcataga aggtatatgt atcgtaatcg tatcccttta tttcgccgga gtactgagcg
      241 ctgctatggc cttttctgaa ctcaacattg acattcttac ccgcagcaaa gctcgtggag
      301 gttagcagtg caaacagcaa tacagcctta ctgatgctct tgattttcat tggtagtctc
      361 ctgttcagaa tgagtacgat gaactgttat aatataacaa tccctaacgg gagaattcca
      421 gtggcttttc tgcgttcggt aaaatcccgg cgcggcattt tttgccgggg ggattactta
      481 taaaggggca tggactcaac aaaccgcaga aatctacagc tggctggctt gtggcgcggg
      541 tttcattgat gttagcttat gccaaaacct ggcatcttaa agagtaaaag tatgttttgt
      601 gtgatttatc gaagcagcaa gcgtgaccag acctatttat atgtcgaaaa aaaagacgat
      661 ttttcgcgtg ttcctgagga actgatgaaa ggttttggtc agcctcagtt agcgatgatt
      721 ctgccgttgg atgggcggaa gaaactggtc aatgctgata ttgaaaaggt taaactggca
      781 ttaaccgagc aaggttacta tttgcagtta ccgccaccac ccgaagattt gctgaagcaa
      841 catctttccg tcatggggca gaaaacagac gacacgaaca aataaccgat atccggcggt
      901 ggcattatct ttgtcggcgc gggttttcat atccacgata aggtgagggg aacgttatgt
      961 atcaacatca caactggcaa ggtgcgctgc tggattatcc ggtgagtaaa gtagtctgtg
     1021 ttggcagtaa ctatgccaaa catattaaag agatgggcag cgcagtgccc gaagagccag
     1081 tgctgtttat taaaccagaa acggcactgt gcgatctgcg gcagccattg gcgatcccat
     1141 ccgatttcgg ttcagttcat catgaagtcg aactggcggt gttgattggt gcgacgctgc
     1201 gtcaggcaac ggaagagcat gtccgcaaag ccattgccgg ttacggcgtg gcgcttgatc
     1261 tgacattgcg tgatgttcag ggaaaaatga agaaagccgg gcagccgtgg gaaaaggcta
     1321 aagcgtttga taactcttgt ccgctttccg ggtttatccc cgcggcggaa tttaccggcg
     1381 atccacaaaa tacaacgctg ggcctgagcg taaacggcga acaacgccag caaggtacga
     1441 ctgcggacat gatccataaa atcgttccgt tgatcgctta tatgagcaag ttttttaccc
     1501 tcaaggccgg tgacgttgtg ttgacaggca cgcctgatgg cgtcggcccg ttgcaaagcg
     1561 gtgatgagct gacagtcact ttcgatgggc attctttgac aactcgcgtt ttgtaatact
     1621 ttttgccgcc tgaaagcggc ggcaaaactt gcatcgctgt gccagactgg ttataaggtg
     1681 cgttttaacg taatggcgga acacctgatg aacgatgtac ctttctggca aagtaaaacc
     1741 ctggacgaaa tgagcgatgc ggaatgggag tcgttgtgtg atggttgcgg tcagtgttgc
     1801 ctgcataaac tgatggatga agacaccgac gaaatctact tcactaacgt cgcctgtcgc
     1861 cagctcaata ttaaaacctg tcaatgtcgg aactacgaac gtcgtttcga gtttgaaccc
     1921 gactgcatta aattaacccg tgaaaatctg ccaacattcg aatggctgcc aatgacctgc
     1981 gcttatcgtt tgctggcgga aggtaaagat ttacctgtgt ggcatccgct acttactggt
     2041 tcgaaagcgg caatgcatgg tgaacgtatc tctgtgcgtc atatcgcagt gaaagaatca
     2101 gaagtgattg actggcagga tcatatctta aataaacctg actgggcgca gtgataaatt
     2161 taatagatgt tgatgggggc tttcttaata tacgtctgga tgctcgccat ttcgtagccc
     2221 tgtttttgaa agcgctctgt cataatgaga gttacccgat accttattat caacag
//
LOCUS       DAJVUP010000287         2229 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.294, whole genome shotgun sequence.
ACCESSION   DAJVUP010000287 DAJVUP010000000
VERSION     DAJVUP010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.294"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            33..1280
                     /locus_tag="OQQ75_004233"
                     /pseudo
     CDS             33..1280
                     /locus_tag="OQQ75_004233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001601124.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
     gene            1280..1864
                     /locus_tag="OQQ75_004234"
     CDS             1280..1864
                     /locus_tag="OQQ75_004234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000885581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1978345.1"
                     /translation="MAFRMSEQARTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTD
                     IAPPDIPAGFVAVFNSDEASWHLVEDHRGKTVYDVASGDELFISELGPLPENVTWLSP
                     EGEFQKWNGTAWVKDTEAEKMFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEE
                     TSLLEAWKKYRVLLNRVDTSTAPDIEWPTNPVRE"
     gene            complement(1919..>2229)
                     /locus_tag="OQQ75_004235"
     CDS             complement(1919..>2229)
                     /locus_tag="OQQ75_004235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCS1978346.1"
                     /translation="SISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDG
                     VVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
                     "
BASE COUNT          589 a          493 c          573 g          574 t
ORIGIN      
        1 catctgaaac gcttgccgcg acaccgaaag cagtgaaagc agctaatgat aatgcgaatg
       61 gtcgggtacc ttctgcccgt aaggtgaatg gtaaggcgct ttcagcggat ataacactga
      121 cgccgaaaga tattggtacg cttaactcaa caacaatgtc attcagcggt ggtgctggtt
      181 ggttcaaatt agcaacggta accatgccac aggcgagttc tgttgtttca attacgttga
      241 ttggtggtgc gggatttaac gtggggtcac ctcaacaggc aggtatatct gaacttgttt
      301 tgcgtgcagg taatggtaat ccgaagggga ttactggtgc tttatggcag cgcacatcga
      361 cagggtttac aaattttgcc tgggtcaata catctggtga tacttacgat atttacgttg
      421 caatcggaaa ttatgcgact ggtgtaaata ttcaatggga ttataccagt aatgccagcg
      481 tgacgattca tacgtcacca gcatattctg ctaataagcc ggaagggtta acggacggta
      541 cagtttattc actctatacg ccatcagagc agttttatcc gcctggcgca ccaatcccgt
      601 ggccatcaga taccgttccg tctggctatg ccctgatgca ggggcagact tttgacaaat
      661 ctgcataccc gaaacttgca gccgcttatc cgtcaggcgt gatccctgat atgcgtggct
      721 ggacgattaa gggcaaaccc gccagtggtc gtgccgtatt gtctcaggaa caggacggca
      781 ttaaatcgca cacccacagc gccagcgcat ccagtacgga tttggggacg aaaaacacat
      841 cgtcgtttga ttacggaacc aaatccacga ataacaccgg ggcgcatacg cacagtctga
      901 gtggctctac ggggtctgcc ggtgatcata ctcatggtaa tggtattcgt tgaccaggag
      961 gcggcggttc tgcgttagca ttttatgatg gcggtgggtt cacttatgtc caggattcac
     1021 agtatcaagt aagcccgggg acttcttccc gtagatcgta ttatcaacgt attcagacac
     1081 agtcagcagg tgctcatacc cactcgctgt ctggtactgc agcaagttct ggcgcacatg
     1141 cacatactgt aggtattggt gcgcatacgc actccgttgc gattggttca catggacaca
     1201 ccatcaccgt taacgctgct ggtaacgcgg aaaacaccgt caaaaacatc gcatttaact
     1261 atattgtgag gcttgcataa tggcattcag aatgagtgaa caagcacgga ccataaaaat
     1321 ttataatctg ctggccggaa ctaatgaatt tattggtgaa ggtgacgcat atattccgcc
     1381 tcatacaggt ctgccagcaa acagtaccga tattgcacca ccagatattc ctgctggctt
     1441 tgtggctgtt ttcaacagtg atgaggcatc gtggcatctc gttgaagacc atcggggtaa
     1501 aacggtttat gacgtagcgt caggggacga gttatttatt tctgaactcg gtccgttacc
     1561 ggaaaatgtt acctggttat cgccggaagg ggagtttcag aagtggaacg gcacagcctg
     1621 ggtgaaggat acggaagcag aaaaaatgtt ccggatccgg gaggcggaag aaacaaaaaa
     1681 caacctgatg caggtagcca gtgagcatat tgcgccgctt caggatgctg cagatctgga
     1741 aattgcaacg gaggaagaaa cctcattgct ggaagcctgg aaaaagtatc gggtgttgct
     1801 gaaccgtgtt gatacatcaa ctgcacctga tattgagtgg cctacgaacc ctgtcaggga
     1861 gtaatcattg ggattatgcc gcagcacgtc ttaagcaaga acgtgctgcg gttggatgct
     1921 attttttccc tgaagcggaa aacattacta cagtaccttg aaccttggtt ttaacattct
     1981 cgaaatgctc tgagagtata tgtgttaagc cttcttcgga atcttttgtg tttgaaaaga
     2041 tgcctttctg attgtaaatg cgcatcagtt tttgaccgaa gctattgtgc acaactccat
     2101 cgccaagaat tgtggctccg tatagagttc catcgtcagt taaggcctgc gccgcattgc
     2161 gtattacaca gctttttgta gatatatttc caggcaggca gtgaagaagg taaaacatgg
     2221 aaatggaat
//
LOCUS       DAJVUP010000288         2173 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.295, whole genome shotgun sequence.
ACCESSION   DAJVUP010000288 DAJVUP010000000
VERSION     DAJVUP010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.295"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            376..519
                     /locus_tag="OQQ75_004236"
                     /pseudo
     CDS             376..519
                     /locus_tag="OQQ75_004236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558263.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            666..934
                     /locus_tag="OQQ75_004237"
                     /pseudo
     CDS             666..934
                     /locus_tag="OQQ75_004237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001449236.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1325..>2173
                     /locus_tag="OQQ75_004238"
     CDS             1325..>2173
                     /locus_tag="OQQ75_004238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858398.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1978347.1"
                     /translation="MIKSTNIQAIGSGIMHQINNIYSLTPFPLPMELTPSCNEFYLKA
                     WSEWEKNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPLLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLAMANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPRIFFSMGNSA
                     TISAPEH"
BASE COUNT          726 a          464 c          365 g          618 t
ORIGIN      
        1 gcttcttacc atatttgaaa taaagctcaa tagcgcaaat tttttgttct tcagtaaaca
       61 tgtttcatct tctgagagtc caggaaatcg tccgcatccc cattaccgtc ttatatcact
      121 ggcgctgaca tgtgctcatt gatgaagtga atctgaatga catgttttgc catatcaacg
      181 ccaaccggtg tatatttcat ttgtggagtc tccagtctga ggacgcttta tgcatcccgt
      241 attgggcagt atgatgccgg aaagctgcga ggctccacac ctgccagttt caccctttta
      301 accatcatac tactccgtgt ttaattgtgt gggatgcgtt cattacattt taacagtgtc
      361 accccgtcgg ccacgaaaga taaacaggtg accagaaaag ggatcttcat ccagcacatg
      421 ctatatcttg aacgtaacaa cctgaccctc cgcacccgca tcaagcggct ggcacgtaaa
      481 acaatctgct tctcgcgttc cgtggaaatc cacgaaaagt catcggctcc ttcattgaaa
      541 aacacatatt ctactgattg gaagcgccac ccgaaaaagt atcgtttttt tacagtaaac
      601 ttcatttagc cgactataat gtaaaaaaat aaatttttta ccgaaatata acataaggaa
      661 gtaatatgct tacacaaact atattccctt gtcttcccaa aaaacaagaa aatatcatcc
      721 ctgaagtatc aaatactata ttagtatctt ctactgttac tacagatgga tgtactgttt
      781 ttaataaaca aaaacagcca tatacgaatt gcaaatacct gctaccaacc gaacgaaaaa
      841 gttgaaattc acagctacag aaatacaatg gttgacaaag ataaatgaag ccggaattaa
      901 tgaaaaacaa agccaacggt attctgattt ctgaagttaa tttcagactc gtttaagctc
      961 cattttcaaa aaaaatatat cagggtttgt tactaataac ttctgaaaac agaaaaaaat
     1021 agagcagtaa ttctatttca gagaggagta actccatcta tcctcgatac gtactgaacg
     1081 ttatcgtgat atattcatca tgctttcttc accattattc gagtacaggg agagacgcaa
     1141 tgaccttaaa taccttttta tggctgaatt accattctca ggaataacag cagactcctt
     1201 cccatagacg gcttaggggg aaagcaatac ccggagaaag ggtacaaagc aaactgtttt
     1261 aaaattaata agctatattc tatttcacta gaattcttat cgctgataag aaattttagt
     1321 tataatgatt aaatcaacca atatacaggc aatcggttct ggtattatgc atcaaataaa
     1381 caatatatac tcgttaactc catttccttt acctatggaa ctgactccat cttgtaatga
     1441 attttattta aaagcctgga gtgaatggga aaagaacggt accccaggcg agcaacgcaa
     1501 tatcgccttc aataggctga aaatatgttt acaaaatcaa gaggcagaat taaatttatc
     1561 tgagttagat ttaaaaacat taccagattt accgcctcag ataacaacac tggaaataag
     1621 aaaaaaccta ttaacacatc tccctgattt accaccaatg cttaaggtaa tacatgctca
     1681 atttaatcaa ctggaaagct tacctgcctt acccgagacg ttagaagagc ttaatgcggg
     1741 tgataacaag ataaaagaat taccattgct tcctgaaaat ctaactcatt tacgggttca
     1801 taataaccga ttgcatattc tgccactatt gccaccggaa ctaaaattac tggtagtttc
     1861 tggaaacaga ttagacagca ttcccccctt tccagataag cttgaagggc tggctatggc
     1921 taataatttt atagaacaac taccggaatt accttttagt atgaacaggg ctgtgctaat
     1981 gaataataat ctgacaacac ttccggaaag tgtcctgaga ttagctcaga atgccttcgt
     2041 aaatgttgca ggtaatccac tgtctggcca taccatgcgt acactacaac aaataaccac
     2101 cggaccagat tattctggtc ctcgaatatt tttctctatg ggaaattctg ccacaatttc
     2161 cgctccagaa cac
//
LOCUS       DAJVUP010000289         2145 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.296, whole genome shotgun sequence.
ACCESSION   DAJVUP010000289 DAJVUP010000000
VERSION     DAJVUP010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.296"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..234
                     /locus_tag="OQQ75_004239"
                     /pseudo
     CDS             1..234
                     /locus_tag="OQQ75_004239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000544830.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            655..1233
                     /locus_tag="OQQ75_004240"
     CDS             655..1233
                     /locus_tag="OQQ75_004240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978348.1"
                     /translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNAC
                     HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
                     VSFVNREGKICHTAYVKSSDNSMAYYHANYSSIDKYITDMCGLICMRHIESTCIIFYM
                     LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
     gene            complement(1342..1600)
                     /locus_tag="OQQ75_004241"
                     /pseudo
     CDS             complement(1342..1600)
                     /locus_tag="OQQ75_004241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            1584..2145
                     /locus_tag="OQQ75_004242"
                     /pseudo
     CDS             1584..2145
                     /locus_tag="OQQ75_004242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          688 a          393 c          528 g          536 t
ORIGIN      
        1 actgtcgata tgaaaaagcg agcatcatac tgacgtcaaa caaaggggtc gcagactggg
       61 gagaaatgtt cggagatcac gtgctggcaa cagcgatcct agatcggctg ctacacgctg
      121 aatatcaaag gagagagtta ccggttaaaa gagaaacgta aagctggagt gctgaccaaa
      181 aacacaacgc caatcagtga tgatgaaatg gtggaaaacg gacagcatca gtaacgaaag
      241 tatcttagca ggcatgaaaa tcgtccgcat cccctaaacg gtcaaaatgc ttctgccgtg
      301 aaggagggag aatgccatct catcacttat atctggcgaa tgaaacacag atggtcggcc
      361 ttgcccccaa acacacggcg gtgcaaaatg gaatggcaga aaacttcgtc aaaacgatga
      421 aatatgatta aatcagtgtt atgttcgaac ctgacgtgtt aacagcagta aagtagtctc
      481 gcgaaggtgt tcaaacatta taatgaatgg catcctcata gtgcgcaggg ttatcgcttg
      541 ctgcggaaat atctgaagcg acgtaccagt aatggggaaa atgatagctg gtttctgaaa
      601 atatagagga aaatgtgata tatatatcct gttaatattt aaggagaata taaaatgaaa
      661 gtctcgttta agtctttagg ctatattttt catgatatat ataataaaaa acacactatc
      721 gatgagttca acgatgtggt aagaaaagca gttttatcag gtaaaattaa cgagctgaat
      781 gcatgtcata aagtggcaat ttttcttgcc gaaaaagaca atgagataac aaagaaagac
      841 aaagccaaga taatagatac attaactgaa aactattcca ttgaatttca acaattaatg
      901 aatattagtg agcgcacgtt aaattcatct ttatatatta ctcctggtga aagtggtttt
      961 gtcagttttg ttaatcgtga aggaaaaata tgtcatactg catatgtaaa atcatcagat
     1021 aatagcatgg catattacca tgcaaattat agcagcattg acaaatatat tacggatatg
     1081 tgcggcctta tttgtatgag gcatattgag tctacttgca ttatttttta tatgcttgat
     1141 gaaaaagttt tatctgccat tgctgaattt atgaatgaaa aaggatggcg ggctgcgttt
     1201 tgttcagcaa agaacttata taaatgtgtt taattttaga aaaactattt ggtaaaatcc
     1261 aacaagagtc gagaggttcg cgttgcttca gcagggcctc agcctgttca accagactca
     1321 gttgcaggtc gtgacgcaga tttagtggtg gtggttgatt gtcagatacc agccgatgat
     1381 cttatagtgc atatcatcag actttgagaa gcatatggtt ttgcgggtaa gccgcttaag
     1441 atgtgtccgc aggttcagat tatgtcgctc tatccgctga gtgcatttct tgcttataac
     1501 atgactggtt gaggacaata aagttcggta taccggctca ggcatcggtc atgtagaagg
     1561 caatgctaaa ctggctcagc aaactaagag cagcgcgcat ccacttaccc aatgcggttg
     1621 agaaaatagc cttcgatcgc tttcatgtgg cgaaacaacc gggtgaggtg gtggataaaa
     1681 cccgccagaa tgaacatccg catcttcctg ttgaaagtcg tcgtcaggca aagggaactc
     1741 gcttcctgtg gcagcacagc gataaatgga tgaccgaatc caggcaggaa aagctgatat
     1801 ggctgcgtgc gcagatgaag ctgacgagcc tgtgctgggc gctgaaagaa ctggcaaagg
     1861 atatctggag cagaccatgg agcgaggaaa gacgcaacga ctggcagaga tggctgtcgc
     1921 tggcggccaa cagtgacgtc cccatgatga agaatgtggc taaaacgata gggaaaaggt
     1981 tgtacggtat cctgaacgcc atgcgccatg gcgtatcaaa cggaaatgcg gaagcactga
     2041 acagcaagat caggctgctg agaataaaag ccaagggcta ccgcaaccgg gagcgcttta
     2101 agctgggagt gatgttccac tatgggaaac tgaatatggc gttct
//
LOCUS       DAJVUP010000290         2095 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.297, whole genome shotgun sequence.
ACCESSION   DAJVUP010000290 DAJVUP010000000
VERSION     DAJVUP010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.297"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..116
                     /locus_tag="OQQ75_004243"
     CDS             <1..116
                     /locus_tag="OQQ75_004243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1978349.1"
                     /translation="VSASSCKVEFRHGNMTLENPSPELLTVLIRELTGRGR"
     gene            113..463
                     /gene="tnpB"
                     /locus_tag="OQQ75_004244"
     CDS             113..463
                     /gene="tnpB"
                     /locus_tag="OQQ75_004244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017901265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1978350.1"
                     /translation="MISLPSGTRIWLVAGITDMRKSFNGLGEQVQHVLNDNPFSGHLF
                     IFRGRRGDMIKILWADADGLCLFTRRLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDW
                     RQPKTSRLNALTML"
     gene            494..2086
                     /locus_tag="OQQ75_004245"
     CDS             494..2086
                     /locus_tag="OQQ75_004245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS1978351.1"
                     /translation="MNQKYLIRIAELECQLRQKDQQLSLVEETEAFLRSALARAEEKI
                     EEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQ
                     VPRQLRQSRHRRPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALK
                     VIRTERVKKACTKCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIF
                     ARQGVELSRALLSNLVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAK
                     TGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLF
                     SAEREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSE
                     RLAVRQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEA
                     DNNAAERALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSV
                     LPEWPSNRVDELLPWNVALTNK"
BASE COUNT          527 a          529 c          601 g          438 t
ORIGIN      
        1 cagttagtgc cagctcctgc aaggtggagt tccgtcacgg taacatgacg ctggaaaatc
       61 cttcaccaga gctgctcaca gtgttgatcc gtgaactgac cgggagggga cgatgatctc
      121 actcccgtca ggcacccgca tctggctcgt tgctgggata accgatatgc gtaagtcttt
      181 caacgggctg ggtgaacagg tacagcatgt gctgaatgat aatcccttct ccggtcacct
      241 gttcatcttc cgtggccgac ggggtgacat gattaaaatc ctgtgggctg atgctgatgg
      301 tctgtgcctg ttcaccagac gcctggagga aggccagttt atctggcctg ctgtgcgtga
      361 cggcaaggta tccattaccc gctcgcaact ggcaatgctc ctcgataagc tggactggcg
      421 tcagccaaaa acatcccgcc ttaatgcact gacaatgttg taaaaatgtc atggccggat
      481 tataaaaacg gccatgaatc aaaaatacct cattcgcatt gcagaactgg aatgccagct
      541 ccgtcagaaa gaccagcaac tgagtctggt tgaagagacg gaggccttcc tgcgctctgc
      601 actggcccgc gccgaagaaa agatcgaaga agatgaacgg gaaatagaac atctgcgggc
      661 tcagatagaa aaactgcgcc ggatgctgtt cggtacccgt tctgaaaaac tgcgtcgtga
      721 agttgaacag gctgaggccc tgctgaaaca acgcgaacag gacagtgatc gttacagtgg
      781 gcgggaagac gatccgcagg ttccccgcca gttgcgacag tctcgtcatc gtcgcccgtt
      841 accggagcat ctgccccgcg aaataaatcg cctggagcca gaagaaagct gttgcccgga
      901 gtgtggcggt gagctggatt atctggggga agtcagcgca gaacaactgg aactggtgag
      961 cagcgctctg aaagtgatcc gcacagaacg ggtaaaaaaa gcctgtacaa aatgtgactg
     1021 catcgttgaa gcaccggcac catcccgtcc gatagagcgt ggtatcgcgg gcccggggtt
     1081 acttgcccgc gtgttaacgg gaaaatactg cgaacacctg ccactgtatc gtcagagtga
     1141 aatttttgcc cgtcagggtg tcgaactgag ccgtgcatta ctctccaact tggttgacgc
     1201 gtgctgccag ttaatgacgc cgctgaatga tgctctgtac cgttatgtaa tgaacagccg
     1261 caaagttcac actgatgaca caccagtaaa agtgctggca ccgggcagga agaaggcgaa
     1321 aacaggatat atctggacgt atgtccggga tgacaggaat gccggttcgc cagagcctcc
     1381 ggcggtctgg ttcgcctact caccggacca tcagggtaaa catccggagc agcaccttag
     1441 tcccttccgg ggtatcctgc aggcagatgc gtttaatggt tacgatcggc tgttcagtgc
     1501 cgaacgagaa ggcggcgcgt tgacggaagc aggatgctgg gctcatgcgc ggcgcaaagt
     1561 ccacgatgta tatatcagta ccaaaagcgc gacagcggaa gaagccctga aactaatcgg
     1621 tgagctgtac gccatcgagc acgaaatacg cgggttgccg gtgtctgaac gcctggcggt
     1681 caggcaaatg cagagtaaac cgctactgac ttccctgtat aagctgatgc aggagaaaga
     1741 acacacgtta tcgaaaaaat gccgtctgag agatgcgttc cggtatatca ggaagcactg
     1801 ggttgcgttg tgcaacttca gtgatgatgg tctggctgag gcggataata atgccgcgga
     1861 aagagcgctt cgtgcagtct gtctcggaaa gaaaaacttt atgttcttcg gcagcgatca
     1921 cggtggagag cgtggtgcgc tactgtacgg gctgatcggc acctgccgac tgaacggtat
     1981 cgatccggaa gcgtatctgc gctatatcct gagcgtactg ccggaatggc cttccaaccg
     2041 tgttgacgaa ctcctgccat ggaacgtagc actcaccaat aaataagcgt caata
//
LOCUS       DAJVUP010000291         1929 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.298, whole genome shotgun sequence.
ACCESSION   DAJVUP010000291 DAJVUP010000000
VERSION     DAJVUP010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.298"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1145)
                     /gene="tuf"
                     /locus_tag="OQQ75_004246"
     CDS             complement(<1..1145)
                     /gene="tuf"
                     /locus_tag="OQQ75_004246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1978352.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
                     YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVG
                     VLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR
                     TTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGR"
     gene            complement(1260..1335)
                     /locus_tag="OQQ75_004247"
     tRNA            complement(1260..1335)
                     /locus_tag="OQQ75_004247"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1300..1302),aa:Thr,seq:ggt)
     gene            complement(1342..1416)
                     /locus_tag="OQQ75_004248"
     tRNA            complement(1342..1416)
                     /locus_tag="OQQ75_004248"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1381..1383),aa:Gly,seq:tcc)
     gene            complement(1533..1617)
                     /locus_tag="OQQ75_004249"
     tRNA            complement(1533..1617)
                     /locus_tag="OQQ75_004249"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1581..1583),aa:Tyr,seq:gta)
     gene            complement(1626..1701)
                     /locus_tag="OQQ75_004250"
     tRNA            complement(1626..1701)
                     /locus_tag="OQQ75_004250"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1666..1668),aa:Thr,seq:tgt)
BASE COUNT          468 a          503 c          484 g          474 t
ORIGIN      
        1 cggccgcctt cacggattgc gaaacgcaga ccgtcgtcca tcgcgatcgg gtggatcagg
       61 gtaacaacca ttttgatgtt gtcgcccggc attaccatct ctacgccttc cggcagttcg
      121 atggtaccag tcacgtcagt agtacggaag tagaactgcg gacggtagcc tttgaagaac
      181 ggagtatgac ggccgccttc atctttggac agaatgtaca cttcagattc gaacttggtg
      241 tgcggcttga tggtgcccgg cttagccagt acctgaccac gttcgatttc ttcacgtttg
      301 ataccacgca gcagaacacc tacgttctca ccagcacggc cttcgtccag cagtttgcgg
      361 aacatttcaa cgccagtaca ggtagacttc tgagtctctt tgataccaac gatttcaact
      421 tcttcaccaa ctttgatgat accgcgttct acacgaccgg taacaacggt accacgaccg
      481 gagatggaga atacgtcttc gatcggcagc aggaacggct tgtcaatcgc acgctctggt
      541 tccggaatgt aagaatccag gaagccagcc agttccagga ttttcgcttc ccactctgcg
      601 tcgccttcca gcgctttcag agcagaacca cgaacgatcg gagtgtcgtc gcccgggaag
      661 tcgtactgag acagaagttc acgaacttcc atttcaacca gttccagcag ctcttcgtca
      721 tcaaccatgt cgcatttgtt caggaacacg atgatgtacg gaacgcctac ctgacgaccc
      781 agcaggatgt gctcacgagt ctgcggcatc gggccgtcag tcgcagcaac taccaggatc
      841 gcgccgtcca tctgagcagc accggtgatc atgtttttaa catagtcggc gtgccccggg
      901 cagtctacgt gtgcgtagtg acgggtcggg gtgtcgtatt caacgtgaga agtgttgatg
      961 gtgataccac gagctttttc ttccggcgcg ttatcgatct ggtcgaatgc gcgagcagca
     1021 ccgccgtagg ttttagccag tacggtagtg attgcagcgg tcagcgttgt tttaccatgg
     1081 tcaacgtggc cgatagtacc gacgttaacg tgcggttttg tacgttcaaa cttttcttta
     1141 gacatcgatt gtccctctaa gacacggata aatcggtgat atcaccacat caaccaggca
     1201 acatgcccga cttgttgaat gcaataaaca gaaggaaaaa acagggagga gaaaagaagt
     1261 ggtgctgata ggcagattcg aactgccgac ctcaccctta ccaagggtgc gctctaccaa
     1321 ctgagctata tcagcacatc ttggagcggg cagcgggaat cgaacccgca tcatcagctt
     1381 ggaaggctga ggtaatagcc attatacgat gcccgcatcc tggaactcgg ctacctgatt
     1441 ttcattctgc actgaatatc gagagaagct ctctttattc gagccggtaa gcgaacttat
     1501 cgtctcgggc tacgccatcg cgtggccgaa attggtggtg ggggaaggat tcgaaccttc
     1561 gaagtctgtg acggcagatt tacagtctgc tccctttggc cgctcgggaa ccccaccgga
     1621 cttgatggtg ccgactaccg gaatcgaact ggtgacctac tgattacaag tcagttgctc
     1681 tacctactga gctaagtcgg catcaagtag cgcgcattct atggagacat gcgagttcat
     1741 gcaactaaaa aattgcataa tttgttttat tggtcacatt ttatgcgaca cgatgaagaa
     1801 acagccgaat ggagggcaga ttagcacact ttttcaacat cattgtgctc aacaatgcgc
     1861 tcctgctaaa ccataattct tcttatcaga tggaatatct gtcacattgc ttttcaacga
     1921 tagcttcct
//
LOCUS       DAJVUP010000292         1920 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.299, whole genome shotgun sequence.
ACCESSION   DAJVUP010000292 DAJVUP010000000
VERSION     DAJVUP010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.299"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..809
                     /gene="potA"
                     /locus_tag="OQQ75_004251"
     CDS             <1..809
                     /gene="potA"
                     /locus_tag="OQQ75_004251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HCS1978353.1"
                     /translation="AFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQ
                     RVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEAL
                     TMSDRIVVMREGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRAN
                     VEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLE
                     SVVELENGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK"
     gene            793..1656
                     /gene="potB"
                     /locus_tag="OQQ75_004252"
     CDS             793..1656
                     /gene="potB"
                     /locus_tag="OQQ75_004252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309597.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HCS1978354.1"
                     /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV
                     KMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLL
                     FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI
                     LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPA
                     MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR
                     LLNKKVSELDD"
BASE COUNT          442 a          465 c          495 g          518 t
ORIGIN      
        1 tggcctttgg gttgcgcatg caaaaaaccc ccgctgctga aattacgccc cgcgtgatgg
       61 aagccctgcg gatggtgcaa ctggaaacct tcgctcaacg taaaccgcat cagctctctg
      121 gtggtcaaca gcaacgcgtc gccattgctc gcgcggtggt taacaagcct cgtctgttgt
      181 tgctggatga gtcgctctca gcgctggatt acaaactgcg taagcaaatg cagaacgagc
      241 tgaaagcgtt acagcgtaag cttggcatta cattcgtctt cgtgactcac gaccaggaag
      301 aagcactcac catgtcagac aggattgtgg tgatgcgcga gggtcgcatt gagcaagacg
      361 gcacgccgcg tgaaatctac gaagagccga aaaacctgtt tgttgccggc ttcattggcg
      421 aaattaatat gtttaacgcc acggtgatcg agcgactcga cgagcagcgc gtacgcgcca
      481 acgttgaagg ccgcgaatgt aatatctacg ttaacttcgc cgttgaaccg gggcaaaaac
      541 tgcatgttct gctgcgcccg gaagacttac gtgttgaaga gattaacgac gacaaccacg
      601 ctgaagggct gattggttac gttcgtgagc gtaactacaa aggcatgacg ctggagtcgg
      661 ttgttgaact ggaaaatggc aagatggtga tggtcagcga attcttcaat gaagacgatc
      721 ctgactttga ccactctctc gaccaaaaaa tggccattaa ttgggtagaa agctgggagg
      781 tcgtactggc tgatgaagaa cacaagtaag ttccagaatg tagtgattgt cactattgtc
      841 ggttggcttg tgttgtttgt ctttctgccc aacctgatga tcattggcac cagctttttg
      901 acccgcgacg acgccagttt cgtcaaaatg gtctttacgc tggataacta cacgcgtctg
      961 ctcgatccgc tctattttga agtgctattg cactcgctga atatggcgct gatcgccacc
     1021 ctcgcctgcc tggtgctggg ctatccattt gcctggtttc tggcgaagct gccacacaag
     1081 gtgcgtccgc tgctgctgtt tctgctgatt gttccgttct ggaccaactc attgattcgt
     1141 atctacgggc tgaaaatttt cctcagcacc aaaggctatc tcaacgagtt tttgctctgg
     1201 ctgggcgtta tcgacacacc aatccgtatc atgttcacgc ccagtgcggt gattatcggt
     1261 ctggtttaca ttctgctgcc gtttatggtg atgccgctgt actccagtat cgaaaaactg
     1321 gataagccgt tgcttgaggc ggcgcgcgat ctcggtgcca gcaagttaca gacttttatc
     1381 cgcatcatta ttccactgac gatgccgggg attattgccg gatgtctgct ggtgatgctg
     1441 ccagcgatgg gcctgttcta tgtgtccgac ctgatgggcg gtgcgaaaaa cctgctgatc
     1501 ggtaacgtca tcaaggtaca gttcctcaat attcgtgact ggccgtttgg tgcagccacc
     1561 agcattacgc tgactatcgt aatgggcctg atgttgctgg tttactggcg cgcttctcgt
     1621 ttgctgaata agaaggtgag cgaattagat gattaatcat ttatattcaa tgcattaagt
     1681 ttgtttttga gtggttttgc cgtttaaggt aacggcgtta tagatcctat caaaatcaat
     1741 caattccatt ctggttttgg cgaaagattt ttcgagagct tcggtcttta actaaaactg
     1801 attgcgtata accccaatac ccctccccga ctatctgaat ggtcggggag gcacttcacg
     1861 cacaaaatat catccctgcg ccgttgatta ctctgcaggt gaagtcggcc actcaatatc
//
LOCUS       DAJVUP010000293         1910 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.301, whole genome shotgun sequence.
ACCESSION   DAJVUP010000293 DAJVUP010000000
VERSION     DAJVUP010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.301"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            353..1711
                     /locus_tag="OQQ75_004253"
     CDS             353..1711
                     /locus_tag="OQQ75_004253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000823236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HCS1978355.1"
                     /translation="MKRKIIPVLIGCTLSFSALAAQPTAERYVVSFPEGTHVNYAGAF
                     ASAFPNGLPVGIGSGLLFTGKQGDALTFATITDRGPNADSPKEGKNETKIFVTPDFAP
                     LLMTIRVQNGKAEAIDPRPLHDDKGAINGLPLASDVIGSTNEVAFSDTLHRLKGDNRG
                     LDTEGITPDGKGGYWLCDEYGPFLINIDSKGKILAIHGPQAAEGEKAIAGGLPNILKW
                     RQANRGFEGLTRMPDGRIIVAVQSTLDIDAKSKKKALFTRLVSFDPASGKTAMYGYPI
                     DSAAYSKNSDAKIGDIVALDNQHILLIEQGRDKNNRMRNLIYEVDLNKASDLSGFDKP
                     GEYPEFDDEKTLSQRGITLAQKTQVVDLRSLGWQQEKAEGLALIDSKTLAVANDNDFG
                     VKVAMQHPVEGKTFKDYRVNAEGKLTLDDKQVETTLRVKPLEKPESDSELWIVTLPEA
                     LK"
BASE COUNT          505 a          473 c          514 g          418 t
ORIGIN      
        1 gggatatggc cctgcctttc cagcaatcgt cgattgttat accagtccac ccacgtgagt
       61 gtggtcagct catcatactg acacgtgcat tacccctacc gcgataatgc aaccgtacaa
      121 tatagggcgt ttcctaaacg cagccctcat cactccaatc caacaagaca cagcattttt
      181 gatcacgaag aaagacaaat aatttccgta aatgtttccg ttgttacaaa taacaacagt
      241 gttttacatt tctttggcct caggcccgcg catgttgcca ttcgatgtca ttttcctgac
      301 tcgtttcttc tttatggtgt agtgtgatct tcactttata gatgctaaca atatgaaaag
      361 aaaaattatt cccgtgctaa tcggttgtac gctctctttc tctgccctgg cggcacaacc
      421 tacggctgag cgctatgtcg tcagttttcc agaaggcacg cacgtgaact acgccggcgc
      481 atttgccagt gcattcccga acggccttcc ggttgggata ggttctggcc tgctgttcac
      541 cggtaaacag ggcgatgccc tgacattcgc aaccattacc gatcgcggtc cgaacgcgga
      601 ttcaccgaaa gaggggaaaa acgaaactaa aattttcgtt acgccagatt tcgcgccgct
      661 gctgatgacg attcgtgtac aaaacggcaa agcggaggcc atcgatcccc gtcctctgca
      721 tgacgataaa ggcgcgatca acggtctgcc gctggcaagc gacgtgattg gctccaccaa
      781 tgaagtggcc ttcagcgaca cgttacatag actgaagggg gataatcgcg ggctggatac
      841 ggaagggatc actccggatg gtaaaggagg ttactggctg tgcgatgagt atggcccgtt
      901 cctgattaac atcgacagta aagggaaaat cctggcaatc cacggtccgc aggcggcgga
      961 aggggaaaaa gcgattgcgg gcggtttgcc aaatatcctc aaatggcgtc aggcgaaccg
     1021 cggctttgaa ggcctcaccc gtatgccgga cgggcgtatt attgtcgccg tgcaaagtac
     1081 gctggatatc gacgctaaga gcaagaaaaa ggcgctgttt acgcgtctgg tgagcttcga
     1141 tccggcaagc ggaaaaaccg cgatgtacgg ttatcctatc gacagcgcgg cctacagcaa
     1201 aaacagcgac gctaaaatcg gagacatcgt ggcgctcgat aaccagcaca tcctgctgat
     1261 cgaacaggga agagataaaa acaacagaat gcgtaacctg atttacgagg tcgatctcaa
     1321 taaggcgagc gacctgtcag gcttcgacaa gccgggtgag tatccggagt ttgatgatga
     1381 gaaaaccctg tcacagcgcg gcattaccct tgcgcagaaa acgcaggttg ttgatctgcg
     1441 ctccttgggc tggcagcagg agaaggctga agggttggcg ctgatcgaca gcaaaacgct
     1501 ggcggtggcg aacgataacg actttggcgt gaaggtggcg atgcaacatc cggtcgaggg
     1561 caagacattc aaggattatc gggtgaacgc ggaaggaaag ctgacgcttg acgacaagca
     1621 ggttgaaacg accctcagag tgaagccact ggagaaaccg gagtctgaca gtgaactgtg
     1681 gattgtgacg ctgccggaag cgttgaaata agtttataag gtacggacag cagtatcgct
     1741 tagtttttca aattcatgta tgtgaacaat attggggttc cggcgtagac ccccaatgaa
     1801 agcgtcacca cgtgaaaaca tgcctgcacg gtttacacgt catcccatgg tggcagccgg
     1861 ttaactttcc tgcgccacca gtggaaaaag gccataagca gtccgaacaa
//
LOCUS       DAJVUP010000294         1888 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.302, whole genome shotgun sequence.
ACCESSION   DAJVUP010000294 DAJVUP010000000
VERSION     DAJVUP010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.302"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>1888
                     /gene="ehaG"
                     /locus_tag="OQQ75_004254"
     CDS             <1..>1888
                     /gene="ehaG"
                     /locus_tag="OQQ75_004254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric autotransporter adhesin EhaG"
                     /protein_id="HCS1978356.1"
                     /translation="FTAAHGNNTASKITNILDGTVTATSSDAINGSQLYDLSSNIATY
                     FGGNASVNTDGVFTGPTYKIGETNYYNVGDALAAINSSFSTSLGDALLWDATAGKFSA
                     KHGTNGDASVITDVADGEISDSSSDAVNGSQLHGVSSYVVDALGGGAEVNADGTITAP
                     TYTIANADYDNVGDALNAIDTTLDDALLWDADAGENGAFSAAHGKDKTASVITNVANG
                     AISAASRDAINGSQLYTTNKYIADALDGDAEVNADGTITAPTYTIANAEYNNVGDALD
                     ALDDNALLWDETANGGAGAYNASHDGKASIITNVANGSISEDSTDAVNGSQLNATNMM
                     IEQNTQIINQLAGNTDATYIQENGAGINYVRTNDDGLAFNDASAQGVGATAIGYNSVA
                     KGDSSVAIGQGSYSDVDTGIALGSSSVSSRVIAKGSRDTSITENGVVIGYDTTDGELL
                     GALSIGDDGKYRQIINVADGSEAHDAVTVRQLQNAIGAVATTPTKYFHANSTEEDSLA
                     VGTDSLAMGAKTIVNGDKGIGIGYGAYVDANALNGIAIGSNAQVIHVNSIAIGNGSTT
                     TRGAQTNYTAYNMDAPQNSVGEFSVGSADGQRQITNVAAGSADTDAVNVGQLKVTDER
                     VAQNT"
BASE COUNT          498 a          479 c          489 g          422 t
ORIGIN      
        1 ttcactgcag ctcatggcaa caataccgcc agcaaaatca ccaatatcct ggacggcaca
       61 gtcactgcaa ccagttccga tgccattaac ggtagccagc tttatgactt aagcagcaat
      121 atcgccacct acttcggcgg caatgcttct gtgaatactg acggtgtgtt taccggtcca
      181 acctacaaaa tcggtgaaac aaattattat aacgtcggcg atgcactggc tgcgattaac
      241 tcctcattta gcacgtctct cggcgatgct ctgctttggg atgccaccgc aggtaaattc
      301 agtgccaaac acggtactaa tggtgacgca agcgtgatca ctgatgtcgc agatggtgaa
      361 atttcagact ccagttctga cgcagtaaac ggctcacaac tccacggcgt gagcagttat
      421 gttgttgatg cgctgggggg tggtgccgaa gtcaatgcag acggcaccat cactgcgccg
      481 acgtacacca ttgctaatgc tgattacgat aatgtcggtg atgccctgaa tgctatcgat
      541 accactcttg acgacgctct gctctgggat gcggacgccg gtgaaaatgg tgcatttagc
      601 gccgctcacg gaaaagataa aactgccagt gtaatcacta acgtcgctaa cggtgcaatc
      661 tctgctgcca gcagagacgc gattaacggc tcacaactct ataccaccaa taagtacatc
      721 gctgatgcgc tggatggtga cgcagaagtc aacgctgacg gcaccatcac cgcaccgact
      781 tacaccattg cgaacgccga gtacaacaac gtcggtgacg ctctggatgc gcttgatgat
      841 aacgccctgc tgtgggatga gactgccaat ggcggtgctg gagcctacaa tgccagccat
      901 gacggtaaag ccagcatcat cactaatgtc gctaatggca gtattagtga ggacagtacc
      961 gatgcagtga acggttctca gttgaatgcg acgaatatga tgattgagca gaacacccaa
     1021 attatcaatc agctcgctgg taacaccgac gcaacctata tccaagaaaa cggtgcgggt
     1081 attaactatg tgcgtactaa cgacgacggc ttagcgttca acgacgccag cgcacagggt
     1141 gttggcgcta cagctatagg ttataactct gtcgccaaag gcgatagcag cgtagctatt
     1201 ggtcagggca gctacagcga cgttgatacg ggtatcgccc taggtagcag ctctgtttcc
     1261 agccgagtga ttgccaaagg ctcccgtgac accagcataa cggaaaatgg cgttgttatt
     1321 ggttacgaca ccacggatgg cgaactgctc ggtgcattgt ctatcggtga tgacggtaaa
     1381 tatcgtcaaa tcatcaacgt agccgatggt tccgaagccc atgacgccgt tacggttcgt
     1441 caattgcaga atgcgattgg tgcggtcgca accacgccga ctaaatactt ccacgctaat
     1501 tcaacggaag aagattcact ggcagtggga actgactcgc tggcaatggg tgcgaaaacc
     1561 atcgtgaatg gcgataaagg tattggtatc ggttatggtg cctacgtgga cgcgaatgca
     1621 cttaacggca ttgccattgg tagcaatgcg caagtcattc atgtcaacag tattgcgata
     1681 ggtaatggtt ctacgaccac tcgtggcgct caaaccaatt ataccgccta caacatggac
     1741 gcaccgcaga actctgtcgg tgaattctca gtcggtagtg cggatggtca acgtcagatc
     1801 acaaacgtcg cagctggttc agcggatacc gatgcggtta acgtgggtca gttgaaagtc
     1861 actgatgagc gcgtagcgca aaataccc
//
LOCUS       DAJVUP010000295         1842 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.303, whole genome shotgun sequence.
ACCESSION   DAJVUP010000295 DAJVUP010000000
VERSION     DAJVUP010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.303"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(48..254)
                     /locus_tag="OQQ75_004255"
     CDS             complement(48..254)
                     /locus_tag="OQQ75_004255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978357.1"
                     /translation="MTVSYKITYEHRDGDQIRMEEVLFHSEHEPTKDEIHDAVRKDTV
                     RFNSPSNGVTAVSGFKVISVVPVP"
     gene            complement(752..825)
                     /locus_tag="OQQ75_004256"
     tRNA            complement(752..825)
                     /locus_tag="OQQ75_004256"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(791..793),aa:Gly,seq:ccc)
     gene            complement(904..1659)
                     /locus_tag="OQQ75_004257"
     CDS             complement(904..1659)
                     /locus_tag="OQQ75_004257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311765.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HCS1978358.1"
                     /translation="MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTV
                     KRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTT
                     KTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
                     AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGST
                     DAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC"
BASE COUNT          477 a          447 c          410 g          508 t
ORIGIN      
        1 atattaagaa gtaataatta ggggcttcca gccccttcta taaccattca tggaacaggg
       61 acaaccgaaa tcactttaaa ccctgaaaca gccgttactc cattagatgg agaattaaat
      121 ctcacagtat cttttcttac tgcatcatga atttcatctt ttgttggttc atgctctgaa
      181 tggaataaaa cctcttccat tctaatttga tcaccgtctc tatgctcata agtaatcttg
      241 tagctaacag tcatatcaac ctcatgcagg ggaattgtga gattattata gacaatagaa
      301 accataaagc cccgttggtg atacagcaac aagcgggagc gtagcgactt catcagattg
      361 tcagaaagat cacaccttat caggataacc gtgtacccgt tgggagcgtg gctgaaacgc
      421 tgatagagct tgcatatggt ttgcaaggac caatatcacc ataaacctgt ttacgcagcc
      481 acaaggccgc acatcgggct taaatgcgtg tgttcagtct gtcgatgaca ttacaatgcc
      541 aggatgggct ttatcttcac gttgtgctat cgcggtgtga gaggtgcaac tgccgccaac
      601 gttaggttat actgtcatct caccgtgtaa cttaacgtga cagttactaa gggcggatca
      661 caatggtaga actcctaagc aaattaaata ggtaactgtt taagttgctg acagagaaga
      721 cttttttagt cttctccacc tggggagatt ctggagcggg cgaagggaat cgaaccctcg
      781 tatagagctt gggaagctct cgttctacca ttgaactacg cccgcttcga gatgcgtaag
      841 gcattataaa ccttacgctc tccttagcaa gtgccgcgct gctgactgct gattaattcg
      901 ccatcagcat tttggcttgc tgccctgcgg cggcaagtaa cgtagcggat caattgccgt
      961 tgcacggtaa cgaatctgga aatgcaggcg aacagatgcc gcatccgtgc tccccatagt
     1021 ggcgattttt tgcccagtct tcacgctttg cccattattt accagcatcg tgtcattatg
     1081 ggcgtaagcc gtaatgtaat cttcactgtg tttaatcatg atgagattac cgtagccacg
     1141 cagctggttg cccacataca ccacctttcc tgcacccgcg gcgtaaatag gtgtaccccg
     1201 tggagctgag atatcaatcc ctttattgcc gccatctgct gtcgaatacg gcatgataac
     1261 tttccctgtc gttggccata accaacaacg ttgccctact ggcggccagg aagatttcgg
     1321 taccgctgat gacggtgtaa ccgatgcggt tttggtcgtt gatttggcgg ttgatttacg
     1381 tgtactactg ctacttttcg ccccacccag ttttagtttc tgaccaactt caatggtgta
     1441 agggggggaa atgccgttca gtcgcgccag ttcttttacg ctggttcccg tggtgcgcga
     1501 aatacgatat agcgtatccc cccgtttcac ggtgtaaacg gagccggaat atgttcctgt
     1561 atcggatgat ttgctacccg aacagcccgc caaaagcagt ccaaccgata acaacatcac
     1621 gatacccaga gattttttat tcaggcgtcc cgcactcaaa atctttcctc gcttaaaaaa
     1681 caagacgcct tatcatagca gccagcctct tgatacccaa tctcttgctt ctggaaaaac
     1741 gtggtaatag agaaagaggt taatttcatt tggcaaaggg aagtatcatc agcaaaatat
     1801 tcgctgtaga ggtatcgaac ttcctgactt tttaccctat tt
//
LOCUS       DAJVUP010000296         1837 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.304, whole genome shotgun sequence.
ACCESSION   DAJVUP010000296 DAJVUP010000000
VERSION     DAJVUP010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.304"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>1837
                     /locus_tag="OQQ75_004258"
     CDS             <1..>1837
                     /locus_tag="OQQ75_004258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS1978359.1"
                     /translation="RYEKGGKDGITMTFIGPSPSVQDKSASTDNTNINGEDMTEIEES
                     MLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARAEELPAVTALAISHKTSLL
                     DSLEIRDLHKLVRDTDKVFPNPGNSDLGLITAFFEAYLDADYTVRGLLTKEWMKGNRV
                     SRITRTASGANAGGGNKTDRNPNLVHTLDTLDVEIAAATLPMDFNIYEIPGSVYRRAK
                     EVVLKKESPFKEWSAALRAPPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINAYLT
                     ETDHENPSKETLTATRHTPEKDILEEINREVVTERETEEEKPQPSDAMAGEQATTETM
                     EPDTTEHCQNAQSLDAQSQVSSANQVKVTADEVNKIMQAANISQPDADKLLAVSRGEF
                     VEGISDPNDPKWVKGIQTRDSVNQNQHESERNDQKAEQNSPNALQNEPETKQSEPVAQ
                     QEPEKVCTACGQSGGGNYPDCGAVMDDATYQKTFDEENQVEVQENDPEEMEGAEHPHK
                     ENAGSAQDHASDSKTGETADPLITVNGHHEITSTSRTCDHLMIDLETMGKNPDAPIIS
                     IGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREA"
BASE COUNT          560 a          465 c          448 g          364 t
ORIGIN      
        1 accgctatga aaaaggcggg aaagatggca tcacaatgac atttatcggc ccttccccct
       61 ctgttcagga caaatcagcc agcactgata ataccaacat caacggcgaa gacatgactg
      121 agattgagga gagcatgctt ctacctgtct ccggtcagga actgcccatt cgttggcttg
      181 ctcaacacgg cagcgaaaaa ccagtaacgc acgtttcacg cgacgaactc caggcattac
      241 acattgcacg ggctgaagaa ctaccggctg ttactgccct ggctatttcg cataaaacca
      301 gtctgctcga ctcgctggag attcgcgacc tccacaaact ggttcgtgac actgacaaag
      361 ttttccctaa tcctggtaat tcagacctgg gactaataac tgcttttttc gaagcatact
      421 tggacgctga ctacactgtt cggggcctgc tgacaaaaga gtggatgaaa ggaaatcgtg
      481 tttcacgcat cacccgcacg gcttccggtg ctaatgctgg tggtgggaac aaaaccgatc
      541 gcaatccgaa tttagtacac accctcgaca cactggatgt ggagattgca gcagccacac
      601 ttccgatgga ttttaatatt tatgaaattc cgggcagcgt ttatcgtcgc gcaaaagaag
      661 tagtcctgaa aaaagaaagt ccgttcaaag aatggtccgc agcacttcgt gcacccccgg
      721 gtattctgga ctattcccgc gccgctattt ttgcacttat ccgaagcgca caccctgaat
      781 tttatcacta cccgggacgc cttcaggggt atatcaacgc ctatttgacg gaaactgatc
      841 acgagaaccc cagcaaggaa actctcacag ctacccggca tacgccggaa aaagatatcc
      901 tggaagaaat taaccgcgag gtggttactg agcgtgaaac agaagaagaa aaaccacaac
      961 catctgacgc aatggcaggt gaacaggcaa caactgaaac aatggaaccg gatacaactg
     1021 aacattgcca gaacgcgcag tcgctggatg ctcagtcgca ggtgagttcc gctaaccaag
     1081 taaaagtcac cgctgacgaa gtaaacaaaa ttatgcaggc agccaatatc agccagcctg
     1141 acgccgataa gttacttgct gtatcgcgtg gtgaatttgt tgaggggatt agcgacccta
     1201 atgatccgaa atgggtcaag gggatccaga ctcgcgattc tgtgaaccag aaccagcatg
     1261 aatcggaacg gaacgaccaa aaagcggaac aaaacagccc aaatgcgtta caaaacgagc
     1321 cagaaacgaa acaatccgaa ccagtagcgc aacaggaacc ggaaaaagtc tgcaccgcct
     1381 gcggtcagag cggtggcggc aactaccctg attgtggcgc ggtgatggac gacgcaacat
     1441 accagaaaac attcgatgaa gagaatcagg ttgaagttca ggaaaatgat ccggaggaaa
     1501 tggaaggcgc tgaacatcca cacaaggaga atgctggcag cgctcaggac cacgccagcg
     1561 atagtaaaac tggcgagacg gcagatccct taattacggt gaatggtcat cacgaaatca
     1621 catccaccag caggacgtgt gaccatctaa tgatcgacct tgaaaccatg ggaaaaaatc
     1681 ctgatgcccc gatcatctca ataggtgcaa tatttttcga tccgcaaacc ggagatatgg
     1741 gacccgaatt tagtaagact atcgatctgg aaactgctgg cggagtcatt gatcgggaca
     1801 ccattaaatg gtggcttaag caatcacgcg aagcgca
//
LOCUS       DAJVUP010000297         1831 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.305, whole genome shotgun sequence.
ACCESSION   DAJVUP010000297 DAJVUP010000000
VERSION     DAJVUP010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.305"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(183..656)
                     /locus_tag="OQQ75_004259"
     CDS             complement(183..656)
                     /locus_tag="OQQ75_004259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA14"
                     /protein_id="HCS1978360.1"
                     /translation="MKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEI
                     YRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG"
     gene            812..1825
                     /gene="intI1"
                     /locus_tag="OQQ75_004260"
     CDS             812..1825
                     /gene="intI1"
                     /locus_tag="OQQ75_004260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 integron integrase IntI1"
                     /protein_id="HCS1978361.1"
                     /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF
                     IRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQ
                     EIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDF
                     DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALER
                     KYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATP
                     HTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLT
                     SER"
BASE COUNT          389 a          509 c          489 g          444 t
ORIGIN      
        1 tcctgcgaat atgtgagttt tgacctaatg agccacaaaa actcattttc gcccacgata
       61 atttttctac ttcctttctt tggaatgctc atttcaatat tcacataacg tcgctatcaa
      121 tcgcggaaaa ggcgtagtgc gcgaagcgaa cgaagctttt tgccgtcgat tgcatagctt
      181 tgttaaccct ttttccaaat ttgatagcaa tagttaatgt ttgaagtaaa gtgttgctca
      241 aaaacaactt cgaaggtatt tggaatactc gggaagaaaa catccccctc tggctcgatg
      301 tcgatcgtcg ataagtggag cgtagaggcc atgggtaatg tttctcggta aatttctccg
      361 ccaccagaca ctataacgtg accggtgaat tcagctagcc tgtccatggc ctcttcgatt
      421 gactgaaata caactacatt gtcatcattt gatgtccaac ctgagcgggt aacgaccgcg
      481 tatttcctat tggggagtgc gcccatagat tcaaacgtct tgcgacccac cagaagccac
      541 tgattgtagg tcaatgcttt aaaaagtagc tgctcccctt tcgcggacca gggtatgtct
      601 ggaccgcaac caatcacgcc gtttttcgct ttcgcagcca tcaatgatac tttcaaggtt
      661 ctcatcctgg gttaactttg ttttagggcg actgccctgc tgcgtaacat cgttgctgct
      721 ccataacatc aaacatcgac ccacggcgta acgcgcttgc tgcttggatg cccgaggcat
      781 agactgtaca aaaaaacagt cataacaagc catgaaaacc gccactgcgc cgttaccacc
      841 gctgcgttcg gtcaaggttc tggaccagtt gcgtgagcgc atacgctact tgcattacag
      901 tttacgaacc gaacaggctt atgtccactg ggttcgtgcc ttcatccgtt tccacggtgt
      961 gcgtcacccg gcaaccttgg gcagcagcga agtcgaggca tttctgtcct ggctggcgaa
     1021 cgagcgcaag gtttcggtct ccacgcatcg tcaggcattg gcggccttgc tgttcttcta
     1081 cggcaaggtg ctgtgcacgg atctgccctg gcttcaggag atcggaagac ctcggccgtc
     1141 gcggcgcttg ccggtggtgc tgaccccgga tgaagtggtt cgcatcctcg gttttctgga
     1201 aggcgagcat cgtttgttcg cccagcttct gtatggaacg ggcatgcgga tcagtgaggg
     1261 tttgcaactg cgggtcaagg atctggattt cgatcacggc acgatcatcg tgcgggaggg
     1321 caagggctcc aaggatcggg ccttgatgtt acccgagagc ttggcaccca gcctgcgcga
     1381 gcagctgtcg cgtgcacggg catggtggct gaaggaccag gccgagggcc gcagcggcgt
     1441 tgcgcttccc gacgcccttg agcggaagta tccgcgcgcc gggcattcct ggccgtggtt
     1501 ctgggttttt gcgcagcaca cgcattcgac cgatccacgg agcggtgtcg tgcgtcgcca
     1561 tcacatgtat gaccagacct ttcagcgcgc cttcaaacgt gccgtagaac aagcaggcat
     1621 cacgaagccc gccacaccgc acaccctccg ccactcgttc gcgacggcct tgctccgcag
     1681 cggttacgac attcgaaccg tgcaggatct gctcggccat tccgacgtct ctacgacgat
     1741 gatttacacg catgtgctga aagttggcgg tgccggagtg cgctcaccgc ttgatgcgct
     1801 gccgcccctc actagtgaga ggtagggcag c
//
LOCUS       DAJVUP010000298         1764 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.306, whole genome shotgun sequence.
ACCESSION   DAJVUP010000298 DAJVUP010000000
VERSION     DAJVUP010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.306"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..279
                     /locus_tag="OQQ75_004261"
     CDS             <1..279
                     /locus_tag="OQQ75_004261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="oxidoreductase, Fe-S subunit; terminal electron
                     transfer protein for the reduction of DMSO; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit B"
                     /protein_id="HCS1978362.1"
                     /translation="PQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDE
                     LRKKHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            281..1144
                     /gene="dmsC"
                     /locus_tag="OQQ75_004262"
     CDS             281..1144
                     /gene="dmsC"
                     /locus_tag="OQQ75_004262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     DmsC"
                     /protein_id="HCS1978363.1"
                     /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV
                     IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW
                     LLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMF
                     MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAA
                     LVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYG
                     LHMTVGMAVAS"
     gene            complement(1179..>1764)
                     /locus_tag="OQQ75_004263"
     CDS             complement(1179..>1764)
                     /locus_tag="OQQ75_004263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1978364.1"
                     /translation="VLLVDHQAGLLSLVRDIEPDKFKNNVLALGDQAKYFNLPTILTT
                     SFETGPNGPLVPELKAQFPDAPYIAHPGNINAWDNEDFVKAVKATGKKQLIIAGVVTE
                     VCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHR
                     DWHNDIEGLATLFSNHIPDYRNLMTCYDTLTKQK"
BASE COUNT          380 a          425 c          489 g          470 t
ORIGIN      
        1 ccgcaatata acgaaacgaa aggccatatg accaaatgcg atggttgtta tgaccgtgtt
       61 gcggagggta aaaagccgat ctgtgttgaa tcttgtccgc tgcgggcgct ggatttcggc
      121 cctatcgacg agctgcgtaa aaaacatggc gatctggcgg ccgttgcgcc gttgccgcga
      181 gctcacttta ccaaaccgaa tattgtgatc aaacccaatg ccaatagccg cccgaccggg
      241 gataccactg gctatctggc aaacccgaag gaggtgtgag atgggaagtg gatggcatga
      301 atggccgctg atgatcttca cggtcttcgg gcaatgtgta gcaggtggtt ttatcgttct
      361 ggctttggcg ctgctcaaag gcgacctgcg agcagaagcc cagcagcgtg ttatcgcctg
      421 catgtttggt ttatgggtgc tgatgggcat tggctttatc gcctctatgc tccatcttgg
      481 ttcaccaatg cgcgctttta actcgctcaa ccgggtaggg gcttcagcac tcagtaacga
      541 aatcgccagc ggttcgatct tttttgccgt aggcggcatc ggctggttgc tggcaatgct
      601 gaaaaagctg tcaccggcat tgcgtacgct gtggctgata gtgacgatgg ttcttggcgt
      661 catctttgtc tggatgatgg tgcgtgtgta taacagcatt gataccgttc cgacctggta
      721 cagcatctgg acgccgatgg gcttcttcct gacgatgttt atgggcggcc cgttactggg
      781 ttacctgttg ttgagtctgg ctggcgtcga tggctgggcg atgcgtctgc tgccagcaat
      841 ttctgtactg gcactggtag tgagtggcgt ggtatcagtg atgcagggcg cagagctggc
      901 gactattcat agttctgtgc agcaggccgc agcgctggtg ccggactatg gtgcgctgat
      961 gtcctggcgg atcgtgcttt tggccgttgc cctgtgcttg tggattgcac cacagctaaa
     1021 aggttatcag cctgcggttc cgctactttc tgtatcattc attctgcttc tggcagggga
     1081 attaatcggt cgcggcgtat tctatggttt gcatatgacc gtggggatgg ccgtcgcaag
     1141 ctaatcataa caaccggggt ttcggccccg gttctctttt atttctgctt cgttaacgtg
     1201 tcataacagg tcatcaaatt acgataatca ggaatgtggt tagagaacaa cgtcgccagt
     1261 ccttcaatat cattatgcca gtcgcgatgc agctcgcacg ccacgccgaa ccatgtcatc
     1321 aattgcgcac cagcttgcga catgcgatcc catgccgaat gccgggtaat ttcattaaag
     1381 gtccctgacg cgtcagtcac gacaaagacg tcaaaccctt cttcaatggc tgaaagcgcc
     1441 gggaatgcca cgcaaacttc ggttaccaca ccggcaataa ttaactgttt tttacctgtc
     1501 gctttgacag cttttacaaa atcttcgtta tcccaggcgt taatatttcc cgggtgagca
     1561 atgtaaggtg catcggggaa ttgtgctttc agttctggaa ctaatgggcc gttaggaccg
     1621 gtttcaaaac tggtggtaag aatagttggt aagttgaaat acttagcctg gtcacccagc
     1681 gccagcacgt tatttttaaa cttatcgggt tcgatatccc gtacaaggga aagtaaacca
     1741 gcctggtgat caacaagcaa aacg
//
LOCUS       DAJVUP010000299         1735 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.307, whole genome shotgun sequence.
ACCESSION   DAJVUP010000299 DAJVUP010000000
VERSION     DAJVUP010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.307"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..711
                     /gene="cmoA"
                     /locus_tag="OQQ75_004264"
     CDS             <1..711
                     /gene="cmoA"
                     /locus_tag="OQQ75_004264"
                     /EC_number="2.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HCS1978365.1"
                     /translation="IARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMISMLAERFVQ
                     PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDV
                     IEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDA
                     KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELW
                     FQCFNFGSLVALKAEDAA"
     gene            708..1679
                     /gene="cmoB"
                     /locus_tag="OQQ75_004265"
     CDS             708..1679
                     /gene="cmoB"
                     /locus_tag="OQQ75_004265"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HCS1978366.1"
                     /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN
                     AVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNID
                     TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ
                     FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN
                     EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRVVDVC
                     VTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP"
BASE COUNT          406 a          429 c          464 g          436 t
ORIGIN      
        1 atcgccagac tgggcgactg gacctttgat gaacgggtag ctgaagtctt cccggatatg
       61 atccagcgtt ccgttcccgg ctattccaat attatttcca tgattagtat gttagccgag
      121 cgcttcgttc aacctggtac gcaggtttac gatctgggtt gttctctggg cgcggcgacg
      181 ctctcggtgc gtcgcaacat tcatcatgat aattgcaaaa ttattgccat cgacaactcc
      241 ccggcgatga ttgaacgctg ccgtcgtcat attgacgcct ataaagcccc tacgccagta
      301 gacgtcattg aaggtgatat tcgcgatatc gccattgaaa acgcatcgat ggtggtgctg
      361 aattttaccc tgcaattcct ggaaccttcc gagcgccagg cattactgga taaaatttat
      421 caaggactga acccgggcgg cgcgctggtg ctttcggaaa aattcagttt cgaagatgcc
      481 aaagttggtg aactgttgtt caacatgcac cacgacttta aacgtgccaa cggttacagc
      541 gaactggaga tcagccagaa gcgcagcatg ctggaaaacg tgatgctgac cgattccgtg
      601 gaaacccata aagcacgcct gcataaagcc ggttttgagc atagcgagct gtggttccag
      661 tgctttaact ttggttcact ggtggcatta aaagcagagg acgctgcatg atcgactttg
      721 gtaactttta ttctctgatt gccaaaaatc atctttcaca ctggctcgaa acgctgcccg
      781 cgcagattgc taactggcag cgcgagcagc agcacgggct gtttaagcag tggtccaacg
      841 cggtggaatt tctgcctgaa attaaaccgt atcgtctgga tttattgcat agcgtaaccg
      901 ccgaaagcga agagccactg agcaccgggc aaattaaacg cattgaaacg cttatgcgga
      961 acctgatgcc atggcgcaaa gggccgttct cactgtatgg cgtcaacatc gataccgaat
     1021 ggcgttccga ctggaaatgg gatcgtgttc tgccccatct ttctgattta accggacgca
     1081 ccattctgga tgtcggctgc ggcagcggtt atcacatgtg gcgcatgatt ggcgcaggcg
     1141 cgcacctcgc ggtggggatc gaccctacgc aactgtttct gtgccagttt gaagcggtgc
     1201 gtaaactact gggtaacgat cagcgcgcac atttgttacc gttaggtatt gaacagcttc
     1261 cggcactgaa agcctttgat accgtctttt cgatgggcgt gctttaccat cgccgttcgc
     1321 cgctggagca tctctggcag ttgaaagatc aactggtgaa tgagggtgaa ctggtgctgg
     1381 aaacgctggt tattgatggc gatgagaaca cggtgctggt accaggcgat cgttacgcgc
     1441 aaatgcgtaa tgtctatttc atcccttccg cgctggcgct gaaaaactgg ctgaagaagt
     1501 gtggttttgt agatatccgc gttgtggatg tgtgcgttac cactactgaa gagcagcgac
     1561 gcactgaatg gatggttacc gaatctctgt ccgatttcct cgacccacat gatccgagta
     1621 agacagttga aggttatcct gcgcctaaac gcgcggtgct gattgcgcgc aagccgtaaa
     1681 ggtctggtat tactgccgga tgcagcgtga atgccttatc cggcctacaa accct
//
LOCUS       DAJVUP010000300         1709 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.308, whole genome shotgun sequence.
ACCESSION   DAJVUP010000300 DAJVUP010000000
VERSION     DAJVUP010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.308"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            112..1389
                     /locus_tag="OQQ75_004266"
     CDS             112..1389
                     /locus_tag="OQQ75_004266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1978367.1"
                     /translation="MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITK
                     EQYSWIVSAFQLAYTLGQPVMGFFIDTVGLKLSFAICAAIWGLATMGHALTGTWSGLA
                     FMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMF
                     HSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKT
                     SIKHILSQRNFWGIGIARFLADPAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLG
                     DLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMRIGLVSIVENPYIAVLLISIG
                     AFSHQCLSTVAATLGGDLFKKDEVATAVGMAGACAWSGQLIFNLFIGAFVHIIGFAPF
                     FIALAFFDIIGAIALWTLIKVKDEEPQVQLATH"
BASE COUNT          444 a          367 c          370 g          528 t
ORIGIN      
        1 agaaatttac acacaataat tttcaatatt tcctctgtac ctgattttta ttacctatta
       61 cacggaaata ccaacaacca gggtttatta atataattaa aaggtttaaa catgaataaa
      121 ataaagaatt accggtggca tatgattgcc ctcgtatgct ttatcactgt aatcaattat
      181 ctggacagaa cggcgttagg tattgcggct ccaacgatta tggagacaac cggaataact
      241 aaagagcaat attcatggat tgtcagtgca ttccagttgg cctatacatt agggcaaccg
      301 gtaatgggct tctttattga taccgtgggt ctgaagttaa gttttgcgat atgtgccgca
      361 atttggggcc tggcgacaat gggccatgca ctaaccggaa cgtggtctgg tctggcattt
      421 atgcgcgccc tgatgggttt cagcgaagcg tcggcaattc cggcgggtgt aaaaaccgca
      481 tcaacatggt tcccggcaaa agagcgtggc gtggcgacag gtgttttcaa tatgggcacc
      541 tcactcggcg cgatgcttgc tccaccgttg attgcctggt gcattatgtt tcatagctgg
      601 caatttgcgt ttattgtttc aggtagtctt gctttgctcg cggctttatt ttggttcttt
      661 tgttataaag atccgaaaga tgccaaacgc ctttctgatg aagagcgcca ctatattgaa
      721 tcagggcaag aacagcatct taaaacagat aagaaagaaa aaacgtcaat caagcatatc
      781 ctcagccaac gtaatttctg ggggattggc atcgcgcgtt ttctcgcaga cccggcatgg
      841 ggaaccatta acttctgggt gccgattttc ttcgtcgaaa cgctgcattt tagcctgaaa
      901 gaaattgcca tgttcgtctg gctgcctttc ctgctgggcg atctcggctg tttagccagt
      961 ggttttgtcg cgaagttctt ccacgatcgc ggcgtgagtt taattaactc acgaagaatt
     1021 accttcacta ttgcagccgt cattatgatg aggattggcc tggtgagtat tgtcgaaaat
     1081 ccctacattg ccgtattact gattagtatt ggcgcgttct cgcatcaatg tctttctact
     1141 gtagcagcaa ctctgggtgg cgatctgttc aaaaaagacg aagtagctac cgcagtgggt
     1201 atggcaggag cctgtgcgtg gagcggtcag ttgattttca acctgttcat cggggcattc
     1261 gttcacatta tcggcttcgc gccgttcttt attgccctgg ctttctttga cattattggt
     1321 gctattgcgt tgtggacgct tatcaaagtt aaagatgaag aaccacaagt acagttagct
     1381 acccactaat tattttaaat aaaaacgcta taattgaggt tatggcgttt ttaaagaagc
     1441 ttgagttatc gaaccccgct taccaacgcg ttgtcagtca tctcccccct ccctggtgca
     1501 tcgttatatc cgtgatgagc gatttttgat attaatatct ttcaccatcc gctattttca
     1561 ccacttcaga aaacaaactt atttttatta atatcaattc tttttctttg aacattcaac
     1621 tgcgatattt gtaaaaacat taaacaggca acaataaaat gacattacca acaactattt
     1681 attcattccc cgcatattta cctcgtttt
//
LOCUS       DAJVUP010000301         1684 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.309, whole genome shotgun sequence.
ACCESSION   DAJVUP010000301 DAJVUP010000000
VERSION     DAJVUP010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.309"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>1684
                     /gene="ppsA"
                     /locus_tag="OQQ75_004267"
     CDS             <1..>1684
                     /gene="ppsA"
                     /locus_tag="OQQ75_004267"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HCS1978368.1"
                     /translation="DKTDIDDVTQLAKAGAQIRQWIIDTPFQPELENAIREAYAQLSA
                     DDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAVKHVFASLFNGRAISY
                     RVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQ
                     GAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHGKQVKIEDVPQEQRDI
                     FSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQARPETVRSRGQVMER
                     YTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVLVTDMTDPDWEPIMKK
                     ASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENVTVSCAEGDTGYVYAE
                     LLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVH
                     PRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRLSD
                     FKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFALECEAVKRVRN"
BASE COUNT          372 a          443 c          492 g          377 t
ORIGIN      
        1 gataaaacgg atattgacga tgttactcag cttgcgaaag cgggcgcgca aatccgccag
       61 tggattatcg acactccctt ccagcctgag ctggaaaacg ccatccgcga agcctatgct
      121 cagctttccg ccgatgacga aaacgcctct tttgcggtgc gctcctccgc caccgcagaa
      181 gatatgccgg acgcttcctt tgccggtcag caggaaacct tcctcaacgt tcaggggttt
      241 gacgccgttc tcgtggcagt gaaacatgta tttgcttctc tgtttaacgg tcgcgccatc
      301 tcttatcgtg tgcaccaggg ttacgatcac cgtggcgtgg cgctctccgc cggtgttcag
      361 cggatggtgc gctccgacct cgcatcttct ggcgtgatgt tctccattga taccgaatcc
      421 ggctttgacc aggtggtgtt tatcacttcc gcatggggcc ttggtgagat ggtcgtgcag
      481 ggggcggtta acccggatga gttttacgtg cataaaccga cactggcggc gaatcgcccg
      541 gctatcgtgc gccgcaccat ggggtcgaaa aaaatccgca tggtttacgc gccgacccag
      601 gagcacggca agcaggttaa aatcgaagac gtaccgcagg aacagcgtga catcttctcg
      661 ctgaccaacg aagaagtgca ggaactggca aaacaggccg tacaaattga gaaacactac
      721 ggtcgcccga tggatattga gtgggcgaaa gatggccaca ccggcaaact gttcattgtg
      781 caggcgcgtc cggaaaccgt gcgctcacgc ggtcaggtca tggagcgtta tacgctgcat
      841 tcacagggta agattatcgc cgaaggccgt gctatcggtc atcgcatcgg tgcgggtccg
      901 gtgaaagtca tccatgacat cagcgaaatg aaccgcatcg aacctggtga cgtgctggtc
      961 actgacatga ccgacccgga ctgggaaccg atcatgaaga aagcatctgc catagtcacc
     1021 aaccgtggcg gtcgtacctg tcacgcggcg atcatcgctc gtgaactggg tattccggcg
     1081 gtcgtgggct gtggtgatgc aacagaacgg atgaaagacg gtgagaacgt cactgtttct
     1141 tgtgccgaag gtgataccgg ttacgtctat gcggagttgc tggaatttag cgtgaaaagc
     1201 tccagcgtag aaaccatgcc ggatctgccg ttgaaagtga tgatgaacgt cggtaacccg
     1261 gatcgagctt tcgacttcgc ctgtctgccg aacgaaggcg tgggacttgc gcgtctggaa
     1321 tttatcatca accgtatgat tggcgtccac ccacgcgcac tgcttgagtt tgacgatcag
     1381 gaaccgcagt tgcaaaacga aatccgcgag atgatgaaag gttttgattc tccgcgtgaa
     1441 ttttacgttg gtcgtctgac tgaagggatc gcgacgctgg gtgccgcgtt ttatccgaag
     1501 cgcgtcattg tccgtctctc tgattttaaa tcgaacgaat atgccaacct ggtcggtggt
     1561 gagcgttacg agccagatga agagaacccg atgctcggct tccgtggcgc gggccgctat
     1621 gtttccgaca gcttccgcga ctgcttcgcg ctggagtgtg aagcagtgaa acgtgtgcgc
     1681 aacg
//
LOCUS       DAJVUP010000302         1677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.310, whole genome shotgun sequence.
ACCESSION   DAJVUP010000302 DAJVUP010000000
VERSION     DAJVUP010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.310"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..1553)
                     /locus_tag="OQQ75_004268"
     CDS             complement(<1..1553)
                     /locus_tag="OQQ75_004268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1978369.1"
                     /translation="MAVLISGVLKDGAGKPIQNCTIQLKARRNSTTVVVNTVASENPD
                     EAGRYTMDVEYGQYSVSLLVEGFPPSHAGIITVYEDSKPGTLNDFLGAMTEDDVRPEA
                     LRRFELMVEEVARNASAVAQNTAAAKKSASDARTSAREAATHATDAAGSARAASTSAG
                     QAASSAQSASSSAGAASTKASEASKSAAAAESSKSAAATSASAAKTSETNAAASQQSA
                     ATSASTATTKASEAATSARDASASKEAAKSSETNAASSASSAASSATAAANSAKAAKT
                     SETNARSSETAAGQSASAAADSKTAAALSASAASTSAGQASASATAAGKSAESAASSA
                     STATTKAGEAAVQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASS
                     ASASKDEATRQASAAKGSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAE
                     DIASAVALEDASTTKKGIVQLSSATNSTSESLAATPKAVKAAYELANGKYTAQDATTA
                     QKGIVQLSNA"
     gene            complement(1618..>1677)
                     /locus_tag="OQQ75_004269"
     CDS             complement(1618..>1677)
                     /locus_tag="OQQ75_004269"
                     /inference="COORDINATES: protein motif:HMM:NF018068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1978370.1"
                     /translation="SGSGDWRTNSFIVGVGYKF"
BASE COUNT          250 a          513 c          474 g          440 t
ORIGIN      
        1 gcgttgctaa gctgaactat ccctttctgt gctgtcgttg catcctgtgc ggtgtatttc
       61 ccgttagcca gctcatacgc ggccttaacg gcttttggcg ttgccgccag tgactcggaa
      121 gtgctgttag tcgcactgct gagctgtact atcccctttt tcgtcgtgct cgcatcctca
      181 agcgccacgg cggatgcaat atcctctgcc cgttttgccg ctgtctcagc gcgcgttgcc
      241 gcggattccg ccgtactttt gctctgagct gccgccgtcg cactgccagc tgcctctgtc
      301 gccttcgtgg atgccgtcgt ggcgctgccc tttgctgctg acgcctgtct ggtcgcctca
      361 tcttttgaag cagacgcaga tgatgccgat gacgccgccg aactggcgga cgatgcggca
      421 gccgtttttg aggattctgc gctggtttcc gacgctttcg cgttcgtctc ggatgtcttc
      481 gctgcggaag cagacctcgc tgctgcgctg gcctgtacag cggcttcgcc agccttcgtt
      541 gtggctgttg aagcagacga tgcagcactt tctgccgatt ttccggcggc ggtggcactg
      601 gctgaggcct gcccggcact tgttgacgcg gcactggcag ataatgcagc cgctgttttt
      661 gagtctgccg cagctgaggc gctctgtccc gctgccgttt cagaagacct ggcgttcgtc
      721 tcggacgttt ttgccgcctt cgcagaattt gctgccgccg ttgccgagga agctgcgctg
      781 ctggcgctcg aggctgcgtt cgtttctgat gattttgccg cctcttttga agccgacgca
      841 tcccgtgctg aagtggctgc ttctgacgct ttcgtggtcg cggtggatgc agaagtggct
      901 gctgattgtt gtgacgctgc cgcattcgtt tctgacgttt tcgcggcact ggcactggta
      961 gctgccgcgc tttttgagga ctctgcagca gcagcacttt tcgatgcttc actggccttt
     1021 gttgatgccg ctcctgcgct ggaagacgct gactgagccg acgacgcggc ctgtccggct
     1081 gacgtgctgg ctgcgcgtgc tgagcctgca gcatcagtcg catgggttgc cgcctcacgg
     1141 gctgatgtgc gggcatcgct ggctgacttc ttcgcggctg ccgtgttctg tgccactgcg
     1201 gacgcgttac gcgccacctc ttccaccatc agttcaaaac ggcgcagtgc ctctggccgg
     1261 acatcatcct ccgtcattgc accgaggaaa tcattcagtg tgcccggctt tgagtcctca
     1321 tatacggtga taatcccggc gtgtgacggc gggaatccct ccaccaacag actgacgctg
     1381 tactgaccat actcgacgtc cattgtataa cgcccggctt catccggatt ttctgaggcc
     1441 actgtgttca ccaccaccgt ggtgctgttg cgcctggcct ttagctgaat ggtgcagttt
     1501 tgtatcggct tacctgcacc atctttcagt acacctgaaa tcagtactgc catattcccc
     1561 ccacaaaaaa gcccgcctga accggcgggc tgtcataaca ctgtgttacc tggctaatca
     1621 gaatttatag ccgacaccaa cgatgaaact gttggtacgc cagtcaccac tgccgga
//
LOCUS       DAJVUP010000303         1672 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.311, whole genome shotgun sequence.
ACCESSION   DAJVUP010000303 DAJVUP010000000
VERSION     DAJVUP010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.311"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(855..1328)
                     /locus_tag="OQQ75_004270"
                     /pseudo
     CDS             complement(855..1328)
                     /locus_tag="OQQ75_004270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708890.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase
                     domain-containing protein"
     gene            complement(1256..1622)
                     /locus_tag="OQQ75_004271"
                     /pseudo
     CDS             complement(1256..1622)
                     /locus_tag="OQQ75_004271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          371 a          465 c          404 g          432 t
ORIGIN      
        1 tcgtcaaaaa aaatcatctt cgtgaagttt tacgacatag tggaggagtt tgcttctttg
       61 aggtgcaggt tttcgtttgc gtggtttagc tgaacgggcc atataactac ctgaaagaca
      121 atgatattgt ctgtttttat aacggtaatc acaggccatg acaagccgca gccgtcaggc
      181 cgcctactcg ggtcggttta gaacgcttat ttagtaccag atcttactta taataaaggg
      241 gcttggcagt ttggataaac tattgtcctt attccactaa tacaaacttt ttgtaaagta
      301 tattaaatat acttcatttc atactgaaat ccccggaagt attcaatcaa acaattacac
      361 cataaaagga agagggggcc ccaattaagt tgtcaagcat gtttactgcg caatcgcttg
      421 gtgctccgtc cctgtacccc gcattggtac tctggcgctc atggggcttc cacttgcgct
      481 tctcccttca catcggggtg acaggtccac gttccccaca agagcctgaa tcgacttcac
      541 gccgctttta tgccggatgc cgcgcaggca gtaaacatat cccacaggaa cgactccacc
      601 attgttttga catcatctat atgctttcga cacatcatca gcggttcact ttcgttcgtc
      661 tcttcgaacc atacctgatc ggctcacgtc cgaccttttc ccatctcgct caccaccaca
      721 tctcttaaat gcagcagcag tggatggttt ggtgcctgcg cctgcacgcc gacaccgagg
      781 ggccttccct catctcttgt gccgcatggc tgcacaggga ctcacgtccc caggacgcgc
      841 cttcgtggca cacagtcatc ggcatagcaa cagtaagcaa cggcaggttt ccattgccag
      901 ttttctttga cagcagtact tcggcctcgc tggatactgt gattccagta ccagcgatcc
      961 tttctggctt ttccactcag gtagcgttta ttcagatact ggtcgaactc attcagtatg
     1021 atgttcgaca gcaacggcga gatcacaccg ccctgtggca tactttcact gaccgcccgg
     1081 aagagaccaa catcaacacg gcgttttcca cagcagtctc ataaaacgtg catcactgat
     1141 cctgcggcag acggctttca tcagcagccg gtgatgtact gtgtcgaagt agctggacag
     1201 gtcaccttca ataacccggc gccccgtgtt tccccgcagt cggtgagctg taatagtacg
     1261 tgatgtctcc cgcccacttc tggttcgggc cactggcgta aaaatcctgc gtcagcagat
     1321 tttctgatac aggcaggccg tgtgcacggt aactgatcgg gctgaacttc tgggaggctt
     1381 ttgcgctcag ttcctgacgg cgcagactgg ctgccacggt ttttacgtta aagtggtaac
     1441 cagagcacac agttcatccg tcaggcgtgg ggcaccgtaa cgctggactg ggtaaaagcc
     1501 ttgcggacaa cgctgtcgca gtgctgacgg aactgctgac gtgtgtttat ccttgtccgc
     1561 cgctgacacc acgtatacca gccgctgcgg gccacccgga gtacgcggca cattgccttg
     1621 atgacggttt acgcggtcgc ctgcggcaac ggctttccgg ctgacggtag tg
//
LOCUS       DAJVUP010000304         1646 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.312, whole genome shotgun sequence.
ACCESSION   DAJVUP010000304 DAJVUP010000000
VERSION     DAJVUP010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.312"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            3..1258
                     /locus_tag="OQQ75_004272"
                     /pseudo
     CDS             3..1258
                     /locus_tag="OQQ75_004272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YccE family protein"
BASE COUNT          540 a          257 c          337 g          512 t
ORIGIN      
        1 atatgggtag taatatacat ggaattagtt gcactgcaaa taattatttg aaacaggcct
       61 ggaacgatat aaaaaatgag tacgaaaaaa atcaaacata ttcaatcacg ctttttgaaa
      121 acacactggt gtgttttatg cggttataca atgaactcag acgtaaagta aatgaagagg
      181 atactccatg tctggaatgt gaatcactag aaaaagaatt tgaggaaatg cagaatgata
      241 atgatctatc attatttatg agaacattgc gtactaatga tacacaaatt tattcagggt
      301 ttcaggaggt attacatata ctatacaata tgttcaaaat gttgatattg ttagagtgtc
      361 cttgccgggc agaggttcag agtctatcac agattttaaa ggttattatt ggtatggctt
      421 tatggaatat attgaaaaca ttactgcgtg tgatgatgtt ttttctgagt attgtttaga
      481 tgatgaaaat atgagtatcc agccagaaca gataaatacg ccgggaatat ctgatttaga
      541 tactggtatt gatttgtctg gcatatcttt tattcagagt gaaattaata aaacatatgg
      601 attaaaatac gctccagtag atggcgatgg atattgtctg ttaagagcta tactggtttt
      661 aaaagaacat gagtattcat gggcgctggg cggccataag acgcaaaagc aagtatacga
      721 agagtttatt aaaattgttg ataaacaaac gatcgaggct cttgttgata cggcattcta
      781 taatctcagg gaagatgtaa agacgttatt tggcgttaat ctacaatctg acaacaaaat
      841 tcaggggcag ggtggttttt tatcatggag ttttttgtct tttaaaaaag aatttattga
      901 tagttgcttg aatgacaaaa aatgcatact gcatttaccc gaatttatat ttaatgataa
      961 caaggtacgc cttgttttag acaccgaccc agagcagagg gttaatgagg tgaaaaattt
     1021 cctcactgct ctttcagata gcatttgctc attatttatt gttaatagta atatggcatc
     1081 aatctccttg gggaatgaat ccttttcaac agatgacgac cttgagtatg tttatttaat
     1141 aaacactggc aatcattatg atgtttacct ccctcctgaa ctttttgctc aggcttataa
     1201 gttaaaaaat aaggaaatga atgcgcaact cgactattta aatcgttatg caatttaatg
     1261 gcaaaggcat atgctaaaaa ccattgttat tagtctcaca cttttttatt ggtaaatatt
     1321 gtctctgtat tggtaacgcc gcagatattc tgtttagcca caggtgcaat tatcagcggc
     1381 gtacgcgagg caggggctaa tcaggcatag tttgcgtcaa accttgcctg tttttgaaga
     1441 tgtatataga aaaacaggcg ttcaacaagc cattttgcga acctgttccc ggaaaaaagt
     1501 catatttctg tcacactctt tagtgattga taacaaaaga ggtgccagga atgaacaaaa
     1561 cgctaatcgc cgcagctgtg gcagggatag ttttactcgc ttcaaacgct caggcacaaa
     1621 ccgtaccgga aggctatcag ctacag
//
LOCUS       DAJVUP010000305         1549 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.313, whole genome shotgun sequence.
ACCESSION   DAJVUP010000305 DAJVUP010000000
VERSION     DAJVUP010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.313"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(328..453)
                     /locus_tag="OQQ75_004273"
     CDS             complement(328..453)
                     /locus_tag="OQQ75_004273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001431667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HCS1978371.1"
                     /translation="MWLPVLFRFLVDSLATLGHRLAASGITSRMLSVIPVLFFWG"
     gene            956..1432
                     /locus_tag="OQQ75_004274"
     CDS             956..1432
                     /locus_tag="OQQ75_004274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1978372.1"
                     /translation="MFIDSEKRLKQLSDEAKKNTEDLEEAKKNSRFTQVSPKGWERVR
                     ELLKDSQGISALKLYSFLAEHIDPTCGAVVADQQFLAEKLGVSRSTIIRWLNYLESKN
                     ALVRIPVAGKVCAYALDPHEVWKGYNTTKNHAAFVTKTLVNKDGDIQRRIMAMFSN"
BASE COUNT          404 a          381 c          405 g          359 t
ORIGIN      
        1 aaaaaaaacc gagccgccac ggttccggta gcgctcaagg cgcggccgga aaccgtctgg
       61 ggagaacccc agacccccat cgctgcaaca ccgacggtct acgaccacct accaaccgca
      121 tggctgcctg ttccgtgcaa atgggctttg cagggggctg gcgcggttcc tggcgacctg
      181 aaagcccctg gttaggggta tcggcgcgct tgacctcctg agagcctctg taagcgtttt
      241 tcgcgccttc catgccctgg cgggcatcta aaacccgttt cgtgcgtctg agagcttttg
      301 agcgcgtttg aggggctatc tggcgactca tccccaaaag aacaacaccg ggatcaccga
      361 caacatgcga gaggtgatcc cgctcgccgc aagtcgatga ccgagcgtag cgagcgaatc
      421 gacgaggaag cggaagagaa ctggaagcca cattgagcac ttacgcactg atgcggggtg
      481 tcggggtgaa gccctgacca agtggtaatc gtatcggcgt gcatgcgcgg ttatacgatt
      541 acacatcctg tcccgatttc tgaggcgttt taacggtgaa cggacggcaa aaacacgatg
      601 gagctgttga acgtgaaaac cacgaaatct ggcaaaaatc acggctggcg aggcttgcat
      661 aggagtaagc cagtatacac tccgctatcg ctacgtgact gggtcagggc ttcgccccga
      721 cacccccaaa gggcgttgcg ttgcacgcaa cacccttacc tagaatagat cttttacgcc
      781 gatttgtaag tggttgtttt tttagtgtgt tttttattta cctgtcgcat ccaggatgac
      841 acaacgttgt cgcatccagg atgcgacaac acgcaacaag gtgttgcata gatgtgtcat
      901 gatggcttag atttgaacca acgttagtgc atgggatttt cagagggaaa aaatcatgtt
      961 tattgattca gaaaaacgac tgaaacaact ttcagatgag gcaaagaaaa acaccgagga
     1021 tctcgaagaa gcaaagaaaa attcaaggtt tacacaagta tccccaaaag gttgggaacg
     1081 tgttcgagag ctgctgaagg atagccaagg catatcagca ctgaagctgt actcattttt
     1141 agcggagcat atcgatccta cgtgtggcgc tgtcgttgcg gatcagcaat ttctagctga
     1201 aaaacttgga gttagcagaa gcacaattat tcggtggctc aattacttag aatcaaaaaa
     1261 tgcattagtt agaatccccg ttgctggtaa ggtttgtgcg tatgccctcg atccacatga
     1321 agtctggaag ggatacaaca ctacgaaaaa ccatgcagcg tttgtcacta aaacactggt
     1381 caacaaagac ggtgatattc agcgccgaat catggccatg ttttcaaatt gagctagcgg
     1441 caggcggaca atcaggggct acgtgttaac gttctgacca tgattgtcta tcctgcattg
     1501 ctcttttgcc gcctcaaaat cctttgcgtg tttttgctcc ccgttctcc
//
LOCUS       DAJVUP010000306         1546 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.314, whole genome shotgun sequence.
ACCESSION   DAJVUP010000306 DAJVUP010000000
VERSION     DAJVUP010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.314"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(174..1322)
                     /locus_tag="OQQ75_004275"
     CDS             complement(174..1322)
                     /locus_tag="OQQ75_004275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1978373.1"
                     /translation="MSTYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVG
                     VVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRF
                     VAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSV
                     LPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGS
                     LYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWSIGRLADKFGRLLVLRVQVFVVI
                     LGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS
                     LLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV"
BASE COUNT          493 a          400 c          341 g          312 t
ORIGIN      
        1 aaaacgaggg attatgcgcg gcaaataaga agtgcggaaa tagcgaaatg caaaattata
       61 acctgctgca cattttattt ttaaacgaat aaaatttgga ataaagcaag tcagatagaa
      121 gaaacaaaaa agcagagtgt gaaacagtaa gttcacactc tgcttgaatt catttacacg
      181 tgagcaacgg gtttcggcgt atgaccggcg ttgcgcagca gcatcagcaa atagataaac
      241 gatacgctgg cgatcatgat aaacaataaa ttatcggaga aattctgcat tagcatagcg
      301 gtaaatgacg ggccaagcag acttcccaca gtatagctca acagtaaggc ctggttcatc
      361 gccaccagtt gatgatgttc aactttctcg caagcccatg ccatcgccac cggatatagc
      421 gtaaagccag cggcaccgag gatgaataac gctggggcca tcgccgcctg gctaagcatc
      481 gcgatactgc cgagaatgac gacaaagacc tgaacacgca acaccagcag tcgaccaaac
      541 ttatccgcca gacgtccaat cgaccattgt ccaaggatac ccgcactgac cagtaccgcc
      601 atccagaaac caatgctggc attgctcacc cctttgtgat tgaggtacag cggcatcagg
      661 ccatatagag atcccagaac gattcctgag ataatgcagc cattcacgcc aagccgcgcc
      721 tgacggagtt ttagcattga cgtaattgac gtcgaatcat ggttttcagc ctgctgattc
      781 agcacacgcg taaacaacag cggtaagatc cctgccaacg tcaaacctgt aacccacggc
      841 aatacggaca tcagctcggt tgaaactttg ctgaccagta actggcctaa aaacgttccc
      901 acgtaataaa ccatcatata cgcagcaagc aaacgcccac ggttacgtga cgtcccactg
      961 cacatcagcg cgctctcaac aaccacccaa atcatggcac agccgacgcc cgcgacaaaa
     1021 cgccaagcca accagctcca gaatccaatc atcaggccaa ggccggcaca gccagcggca
     1081 aaaatgaagg aggccagata atagctgcgg ttaaagccaa tgcgcttaat gacataccct
     1141 gtcagcaatg taccgacaag gttgccggta aaataggatg agctgacaac gcctacctgc
     1201 catgtggaca tgtgttcctg ggcgagccaa agcggcacga gtgtatttaa caccgcaatc
     1261 gccagagtca acaaaagcag gccagacagc aaaagcatga caggccgggt atacgtggac
     1321 atgaattaaa accgtgagga agttcaaatt tcatgcgcat catgccaccg ccaaaacatt
     1381 gtcaatgagt gaaaatacgc gatatcccag cggcggtatt atcgatttat attactcatt
     1441 cataacgcta atgctgaaga gatgattagt ctcatctgat tgtttttatt gaactaacac
     1501 aaatttcata cgcttcgttc agtcgaaaaa tttcatggtc acagca
//
LOCUS       DAJVUP010000307         1545 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.315, whole genome shotgun sequence.
ACCESSION   DAJVUP010000307 DAJVUP010000000
VERSION     DAJVUP010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.315"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            60..904
                     /locus_tag="OQQ75_004276"
                     /pseudo
     CDS             60..904
                     /locus_tag="OQQ75_004276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="programmed frameshift; internal stop; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
     gene            1019..>1545
                     /locus_tag="OQQ75_004277"
     CDS             1019..>1545
                     /locus_tag="OQQ75_004277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630-like element IS630 family transposase"
                     /protein_id="HCS1978374.1"
                     /translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
                     DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
                     FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIRDPHKDEK
                     MAAIHKALDECSAEHP"
BASE COUNT          395 a          400 c          412 g          338 t
ORIGIN      
        1 cgtggcataa ggcgcggaca gcggtatcgt ctggtttttc aatttcctat acgtgaacta
       61 tggctcgcta cgaccttccc gatgaggcat ggaccatcat caagcctctg ttacctcctg
      121 aacccgccac accacgggcc ggacgcccat gggctgagca ccgtaaaatc atcaatggca
      181 tgttctgggt gttatgttcc ggtgcaccat ggcgcgattt acccgaacga tatggggcat
      241 ggaaaactgt ttataaccgc tttaaccgat gatcaaagtc aggcgtgatt aatattattt
      301 tcaacaggtt gctttcgcta cttgatgcaa acggctttat tgactggtct gccaccgcgc
      361 tggatggcag taatatccgg gcgctgaaat gtgccgccgg tgctcaaaaa aacatcccga
      421 tatcgacgga gataatggcc cgggtcgctc tcgcggcggt tttggcacca aaatccatct
      481 ggcaacagac ggaagtggcc tcccgttaaa tatcgtgcta agccccggac aagctcatga
      541 aagccagttc gcgcaacgac ttctggacgg gattggcgtt cagcgtcaga acggcagcat
      601 gaaacgccgt ggacatgcgg tactggctga taaagcgtat tcagggcgcg cattgcgcaa
      661 cgagctgaaa aataacggta taaaggcagt aatcccccga aagtcaaatg agaaaatggc
      721 atcggatgga cgtgcacagc ttgatcgtga tgcgtactgc aatcgtaatg tcgttgaacg
      781 gtgctttggg cggctgaaag aatatcgccg catcgccacg cgttacgaca aaacggcgag
      841 aaattacctg gcgatggtga aactgggctg catccgactc ttttatcaac gcttacgtaa
      901 ttaagggaca cagcctaaat agctgcgcgg aatagtagat ccctttgagg gaacttagcc
      961 cggattgtgc gatctgatca atcgccaaat caaaacaaat caccaaccgg actgagcaat
     1021 gccgatcata gcaccaattt cccgtgacga acgacgcctg atgcagaaag ccatccataa
     1081 aacacacgat aaaaattatg cccgcagact gactgccatg ctgatgctgc accggggcga
     1141 ccgtgtcagc gacgttgcca gaacgctctg ctgcgcccgt tcctctgttg gacgctggat
     1201 taactggttc acgcagtcgg gtgttgaggg actgaaatca ttacctgccg ggcgtgcccg
     1261 tcgctggccg tttgagcata tctgcacact gttacgtgag ctggtaaaac attctcccgg
     1321 cgactttggc taccagcgtt cacgctggag tacagaactg ctggcaataa aaatcaatga
     1381 gataaccggt tgccagttaa atgccggaac cgttcgccgc tggttgccgt ctgcggggat
     1441 tgtgtggcga agggctgcgc caactctgcg tatccgtgac ccgcataaag atgaaaagat
     1501 ggcagcaatc cataaagcac tggacgaatg cagcgcagag catcc
//
LOCUS       DAJVUP010000308         1527 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.316, whole genome shotgun sequence.
ACCESSION   DAJVUP010000308 DAJVUP010000000
VERSION     DAJVUP010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.316"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..1386)
                     /locus_tag="OQQ75_004278"
                     /pseudo
     CDS             complement(1..1386)
                     /locus_tag="OQQ75_004278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313048.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SopA family protein"
BASE COUNT          525 a          266 c          224 g          512 t
ORIGIN      
        1 agcgctggga gcttaccacc ataacaggcc catcatcgac agaggagaac aggataaata
       61 tattatcgtt tcgtgttaat ttattagtgt taaaggttct taacttttct tcagtttcta
      121 taaatatagg tgaaacatca tcactacgaa tccactcttt ataaagatac caggcatttg
      181 ctttgatcat atcatccgtt gatcgtaagg cctgatcgat aagttggata aaaaaattgt
      241 tatttttatc aatcagccct ttattcatat taaacctgtt aataaaatgg atcatctgtt
      301 gggtatcgaa atccaccttg ctgaatcgat gttgacgcat aaaatcatcg aacttgttat
      361 cttcaccaga atggatataa ctgcgtataa ttggatcttt tatataagga caatggctaa
      421 atgttttctt catattctca ataaagtttt tattaacaat attaagaatt tttaattgca
      481 taaccagttt tactgccaga acggatttca atatcattgc attatctggc aatgtatcaa
      541 tcatttttat aatgttattg atataaccat cgagatcttc attcccaaat atatctgaat
      601 aatcaatagt taattccaat tgttctgtaa tgcaatcttt aaaattccct gtcgacattc
      661 gcacatgatc aaacataaca gctgtcaaat tcgatttaat aaatgatatt tctttggcag
      721 acagaaactc tgctctggtg aagtgcgaag cgtaaagata acaattatcg aagtttgaat
      781 ttctaatctg acattcgcga aaattactat gaccaagttg actctgcgag aagtcaactg
      841 tatcaagaat atcttggcta aaatcaacac attcgccact cgttttgaga aaaatcacat
      901 tgtgtaaacg tcgacattta aatatgacat tatcaactgt tgccttagta aaattgcaat
      961 tctcaatttc tttacattcg aaagttacat gttgtagatt tgatgataaa aaagacacct
     1021 tagaaataac gtcaccttta aaatgacaat ttgttacatc aaaatcagac aggtcgatat
     1081 acccctgcga atctttatcc atcagaaaat tacaagcgca ttctattttt tcatttctgt
     1141 agaattttac acttatagta tcattactaa ttgagacttc acgtaacata tttattgcat
     1201 gattttttcg ttccgttgtt ttatatttaa aaatatatca ctgatataaa taaagttatc
     1261 tctgtttaaa cctgtcaccc cattgaaatt acgtagtaaa tcaagatcta ctatattatt
     1321 tccttgaacc acatcatgtt tcatcaaaga gttattgcca ccagaatttg tgatatgacc
     1381 tatcataaaa cctctgtaat acagaaataa aataacctgg aaaagtagcc tgagcgtcca
     1441 gacactaccg gcgaaaggaa aagaatctct gataaggcat tgagataatg gacattctta
     1501 gtgaagaaga agtgaagtac tataaaa
//
LOCUS       DAJVUP010000309         1500 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.317, whole genome shotgun sequence.
ACCESSION   DAJVUP010000309 DAJVUP010000000
VERSION     DAJVUP010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.317"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..508
                     /locus_tag="OQQ75_004279"
     CDS             <1..508
                     /locus_tag="OQQ75_004279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1978375.1"
                     /translation="SATFAGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYG
                     AVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLF
                     ANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAI
                     NANFRYSF"
     gene            555..1137
                     /locus_tag="OQQ75_004280"
                     /pseudo
     CDS             555..1137
                     /locus_tag="OQQ75_004280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000291745.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          396 a          350 c          363 g          391 t
ORIGIN      
        1 ctcggcgacc tttgctgggc tcggaacaaa agactacagt tctcattcct tgtatgtggg
       61 tgctgaagca ggctaccgct atcatgtaac agaagactcc tggattgagc cgcaggcaga
      121 actggtttat ggggccgtat caggtaaacg gttcgactgg caggatcgcg gaatgagcgt
      181 gaccatgaag gataaggact ttaatccgct gattgggcgt accggtgttg atgtgggtaa
      241 atccttctcc ggtaaggact ggaaagtcac agcccgcgcc ggccttggct accagtttga
      301 cctgtttgcc aacggtgaaa ccgtactgcg tgatgcgtcc ggtgagaaac gtatcaaagg
      361 tgaaaaagac ggtcgtattc tcatgaatgt tggtctcaac gccgaaattc gcgataatct
      421 tcgctttggt cttgagtttg agaaatcggc atttggtaaa tacaacgtgg ataacgcgat
      481 caacgccaac ttccgttact ctttctgata acagcccggg ccgcgtttgc ggcccttctt
      541 ctaccggaga gaatatgtat taccctgtga cagactatat cgctcttgct ctcattatta
      601 gctttctttt tctgacatta tttatctgcc tgttatgcct taaacatgag cgaataaaaa
      661 aagaaactat caggcaaaaa aaatgcacat attctggagc atggctggaa tgcaactgag
      721 ttctcatggt tccgatacgg acagtataac gaaacgggta tttacatctc gatcgagaag
      781 accattatca ttacaatcac cgtttctggt gggtgcttta aaaaagaata cagcattgtc
      841 tcccacatgc tggtcactga caccataaca gaggccaccc tgtacgaaaa cgggctgtat
      901 acgcgccaca tcagactcag tcgcccagta tctgacagca aatacccctt gccacccgga
      961 tctcagctca ttaaaaatat gaccttacga ctgcgcctgc aggatcagca ggaagaaaca
     1021 tccgtgacat tatttcaggg aaaaatgagt accgacggaa ataactatta catcatcaaa
     1081 ggtaaagtaa gctcagtact tctgttatta aaaatgctgc agattaatca cgcctgatct
     1141 ctgtcccggt attttagccc gaggtatatt ctgaaatatc attcatcatg accggcgttt
     1201 atacaaacgc cggtcattcg ctaacagctt caccgttcct tcccccatcc aggttccgca
     1261 tgagcgtgtt gtaatgttca taagcgtatt atcgtaagct tccggggaac tcatattgac
     1321 gcgtttttca ggcgcgcgtc atcggcggcg catacgaacg atcgtggttt gataacggtt
     1381 gatttatttt gttgcacagg ggcgatcgcc aggcaggtac cggaggcggg ctctgaagta
     1441 ctgagtaggg tgatcgcgtc aggccgcgaa gtactgactc ggggattaat agcaggtgat
//
LOCUS       DAJVUP010000310         1415 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.318, whole genome shotgun sequence.
ACCESSION   DAJVUP010000310 DAJVUP010000000
VERSION     DAJVUP010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.318"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1368
                     /gene="torZ"
                     /locus_tag="OQQ75_004281"
     CDS             <1..1368
                     /gene="torZ"
                     /locus_tag="OQQ75_004281"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707760.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine N-oxide reductase TorZ"
                     /protein_id="HCS1978376.1"
                     /translation="IQRQQYGEQKHWMLVTLAAVLGQIGTPGGGFGFSYHYSNGGNPT
                     RVGGVLPEMSAAIAGQASEAADDGGMRAIPVARIVDALENPGGKYQHNGKEQTYPNIK
                     MIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTSFERNDL
                     TMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDEMAWLKF
                     FYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYADFRADPVKNALGTP
                     SGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLHSQLNYA
                     ELRKKYAVADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIKKGVVCV
                     HEGAWPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYIEKYTGNAPKLTAFDK
                     PAVQA"
BASE COUNT          373 a          315 c          407 g          320 t
ORIGIN      
        1 attcagcgcc agcaatatgg tgaacagaaa cactggatgc tggtgacgct ggcggcggtg
       61 ttagggcaga ttggtacacc gggcggcggt tttggtttct cttatcatta ctccaatggt
      121 ggcaacccga cacgtgttgg cggcgtgctg ccggaaatgt ctgcggcgat tgccggacag
      181 gccagcgagg ccgctgatga tggcggaatg agggcgattc ctgttgcccg tatcgtcgat
      241 gcgctggaaa atcctggcgg caaatatcag cataacggta aagagcaaac gtatccgaat
      301 atcaaaatga tctggtgggc gggtggcggt aactttaccc atcaccagga tactaatcgt
      361 ctgattaaag catggcagaa accggagatg atcgtcgttt ctgaatgcta ctggaccgca
      421 gctgctaaac atgcagatat cgtattaccg atcaccacat cgtttgagcg caatgacttg
      481 acgatgaccg gtgattacag caaccagcat attgtgccga tgaagcaggc tgtcgctccg
      541 caatttgaag cgcgaaacga ttttgatgtg tttgccgatc ttgcggaatt actgaaacct
      601 ggcggaaaag agatctatac cgaaggtaaa gatgaaatgg cgtggctgaa atttttctat
      661 gatgccgctc agaaaggtgc ccgtgcgcaa cgcgtgacta tgccgatgtt taatgccttc
      721 tggcagcaaa ataaactgat cgaaatgcgc cgcagcgaga agaacgaaca gtacgttcgt
      781 tatgctgatt tccgcgccga tccggtgaaa aatgcgctgg gtacgccaag cggcaaaatt
      841 gagatttact ccaaaacgct ggaaaaattt ggctataagg attgcccggc acatccaacc
      901 tggcttgcgc ctgatgagtg gaagggtacc gccgacgaga agcagttgca gcttctgacc
      961 gcacatccgg cacaccgttt acatagtcag cttaactatg cggaactgcg taaaaaatat
     1021 gcggttgcag atcgtgaacc aatcactatt cataccgaag atgctgctcg ctttggtatt
     1081 gcgaatggtg atctggtgcg tgtgtggaac aaacgtggtc agattctgac aggcgcggtg
     1141 gtgactgacg ggatcaaaaa aggcgtggta tgcgtgcatg aaggtgcatg gccagatctg
     1201 gaaaatggct tgtgtaaaaa cggcagtgcg aacgtgttaa cggcggatat ccccagctcg
     1261 cagctggcaa atgcctgtgc cggtaactct gcgctggtgt atatcgaaaa atatacgggt
     1321 aacgcaccga agttaacggc atttgataag cctgctgttc aggcgtaaga agtgaatagc
     1381 gcccggaaac gggcgctgag gttatgcaaa cgtaa
//
LOCUS       DAJVUP010000311         1412 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.319, whole genome shotgun sequence.
ACCESSION   DAJVUP010000311 DAJVUP010000000
VERSION     DAJVUP010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.319"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>1412
                     /locus_tag="OQQ75_004282"
     CDS             <1..>1412
                     /locus_tag="OQQ75_004282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1978377.1"
                     /translation="IDGLPHVDFSRVDKFFTYADAFRESLPIISGELYFEAHQGCFTS
                     ESATKAHNRNMENKLHDAEFFTTITNNMTSILRSEFDEIWKEMLTLQFHDILPGSCIS
                     RVYLETEKEYIKLEAKTEKIISDTQSTLLSKIDTSSYKDPHILFNTTCFARNEWININ
                     NNWLKARVNSYGYAVIDPKNKIVNGLKAESRSIENNYIKLLFSENGDLISLYDKRYGK
                     EYITENMHSEIRAYHEDAGFFAAWDFASNYRDGESYVLLAEKMTTVISGPKTTMTLIY
                     HYNSSYLRFAFTLTQDSPRVDVQTFIDWHEPNVSLKVKFPVSVQTSLAQCQIQFGVID
                     RPTHSDDSFAFAKDEIPAHHWVDLSDRETGIALIAKNKYGYRVKDQTLDLTLLRSQHK
                     PGEIVKTDNYDNFLINNFADIGKQKFIFSLFPHHGDYRVGGVINQAYIMNHPLQVVPV
                     KPHPGELPPSLSFFAIDTNSV"
BASE COUNT          446 a          278 c          250 g          438 t
ORIGIN      
        1 attgatggct tacctcatgt tgatttcagc cgtgttgata agttcttcac ttacgccgac
       61 gcttttcgcg aaagcttgcc cattatttca ggtgaacttt atttcgaggc tcatcaaggg
      121 tgctttacat cagagtcagc aactaaagct cataatcgaa atatggaaaa taaattacat
      181 gatgctgaat tttttacaac tattactaat aatatgacat caattcttcg cagtgagttt
      241 gatgaaatat ggaaagagat gctgaccttg caattccatg acatccttcc cggatcatgt
      301 atttcaagag tttatcttga aactgaaaag gaatatatta aactagaagc aaaaaccgag
      361 aaaattattt ctgatacgca gtctacttta ttaagtaaaa ttgatacttc ttcttataaa
      421 gatccgcaca ttttatttaa taccacctgt tttgctcgta acgaatggat caatataaac
      481 aacaactggc tcaaagcacg agtaaactct tatggttatg ctgtgattga tccaaagaat
      541 aagatcgtaa atggtctgaa ggcagaatct cgaagtattg aaaataatta cattaaactt
      601 cttttttcag aaaacggtga tttaatttcg ctatatgata aaagatatgg taaagaatac
      661 attactgaaa atatgcacag tgagatccgt gcataccacg aagatgcagg ttttttcgcg
      721 gcctgggatt ttgcttcaaa ttatcgtgat ggggaatcat atgttttact cgctgaaaaa
      781 atgacaactg taatcagcgg gcctaaaact acgatgacgc tgatttatca ctacaattcc
      841 tcttatcttc gcttcgcatt taccctgaca caggacagtc cacgcgttga tgtccaaact
      901 tttattgatt ggcacgaacc taatgtttct ctcaaagtca aattcccggt gtcagtacaa
      961 acatctcttg cacaatgtca aattcagttc ggtgtaattg acagaccaac gcatagcgat
     1021 gattcgttcg cttttgccaa agatgaaata ccagcacatc actgggtcga cctttctgat
     1081 cgagaaactg gcatagcttt aatagcaaaa aacaaatatg gctatcgtgt caaagaccag
     1141 acgcttgact taactttgct gcgttcgcag cataaacctg gggaaattgt taagacagac
     1201 aattatgata atttcctgat taataatttt gcagatattg gtaaacaaaa attcatattc
     1261 tccttatttc ctcatcatgg agattaccgt gtgggtggtg ttattaatca agcctatata
     1321 atgaatcatc ccttacaggt cgtccctgtc aaaccgcacc cgggtgaatt acccccttca
     1381 ctatcatttt ttgctatcga tactaacagc gt
//
LOCUS       DAJVUP010000312         1372 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.320, whole genome shotgun sequence.
ACCESSION   DAJVUP010000312 DAJVUP010000000
VERSION     DAJVUP010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.320"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            144..1109
                     /locus_tag="OQQ75_004283"
     CDS             144..1109
                     /locus_tag="OQQ75_004283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HCS1978378.1"
                     /translation="MTMNLHTQTTAPKASQATSVSPLEQSGSSKTKFSRGKSKARAGA
                     VKTDLYQTVTDSIIAALESGVKPWVCPWVRNGAAVGLPANFSTGTAYSGINIMLLWCS
                     AAKQGFQDERWLTYKQAQELGGQVRKGEHGTTAIFYKTLEKEDEDGEIEKIPMLKAFT
                     VFNVEQIDGLSIESVPQPVAGFDPLPQAEALMIRSGAKITEQGVKAFYRPATDEIVLP
                     ERFRFADAANFYATGLHELVHWTGAASRLNREKGNKFGSEAYAFEELIAELGSAFLLA
                     DLGITGEVQHESYIASWLKALKGDKRYIFKAAAAASKAHRWLMDC"
BASE COUNT          348 a          360 c          415 g          249 t
ORIGIN      
        1 agcttccggt aatcgtcccc cgtcacaacc tggacagcaa gggtaaatgg cacgctgcgc
       61 gcccttgctg accagaacga ctccgggcag gccgaaccgt caggcgatac gaagacgaaa
      121 ttcacactga cggagaaaca gccatgacga tgaacctgca cactcagaca accgccccta
      181 aagcttcaca ggcgaccagc gtatccccgc tggagcagtc aggctcctca aaaacgaaat
      241 tttccagggg caaaagcaaa gcccgtgctg gcgcagtcaa aacagacctt taccagacag
      301 taacggacag catcattgca gccctggaaa gcggcgttaa gccgtgggtg tgtccgtggg
      361 ttcgcaacgg cgcagcggtg ggattaccgg ccaacttcag caccggcacg gcatacagcg
      421 gaattaatat catgctgctg tggtgtagtg cggcaaaaca gggttttcag gacgagcgct
      481 ggctgaccta caaacaggcg caggagctgg gcggccaggt tcgtaaaggt gaacacggca
      541 cgacggccat cttttacaag acgctggaga aagaggacga ggacggggaa atcgaaaaaa
      601 tcccgatgct gaaagccttt accgtgttta acgtggagca aatcgacggc ctgagcatcg
      661 agagcgtgcc gcagccggtt gccggtttcg atccgctgcc gcaggcggaa gcactcatga
      721 tccggagcgg ggcaaaaatc accgagcagg gcgtaaaggc gttctatcgt ccggccaccg
      781 atgaaatcgt cctgccggag cggttccgct tcgcggacgc ggcgaacttc tacgccaccg
      841 gcctgcatga gctggttcac tggacgggtg cagcgtcccg cctcaatcgt gaaaaaggca
      901 ataagtttgg ctctgaggcg tatgcgtttg aggaactgat cgccgagctg ggcagcgcgt
      961 ttctgttggc ggatttgggg attacgggag aggtgcagca tgaaagctat atcgcgtcct
     1021 ggctgaaagc gctgaaggga gacaagcgct acatctttaa agcggcggca gcggcctcaa
     1081 aagcgcaccg ctggctgatg gactgctgac agctggagcc ctgcggtgca gggcttcaga
     1141 atttttgaaa gagagagaat cagggaggga attatataag tcactgtttt ttagaattct
     1201 gtaacgcggc cggcctcagc tgcaggacgt cctgcagctg aggccggcac ggaaaaataa
     1261 accggacaga ttcaaaaaaa atgaaccctt tttcaggcgg tagccgttac gtatccggga
     1321 tacgtaacgg cgcgatgtct tacgtaaaaa atgacgtaac ggctttcgcc gc
//
LOCUS       DAJVUP010000313         1356 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.321, whole genome shotgun sequence.
ACCESSION   DAJVUP010000313 DAJVUP010000000
VERSION     DAJVUP010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.321"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..1356)
                     /locus_tag="OQQ75_004284"
                     /pseudo
     CDS             complement(1..1356)
                     /locus_tag="OQQ75_004284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin acylase family protein"
BASE COUNT          342 a          344 c          299 g          371 t
ORIGIN      
        1 aaggcaaaca gatccgaagc gggataatct ttttggggag aattgttcca gttagcaata
       61 tatcccgaca gggggttata caccttaggg ttcatttcaa aaggcaatag ccctttccag
      121 tcccattttc ccgtaccagg aacgggtaat cgcggatcat ggcctgattg acgatctgga
      181 taagcaccag tatgaacata accaatattg ccgtttacat cagcatagta ccagttgatg
      241 gtcagtgctt gtttcgctac tcctgccaat ttttggcctt catctgatga gtccaggcca
      301 gcaaagacgc cacctcttta ccatcccatg cgcgggattt agcgtaagcc gtttgtgtcg
      361 tctggtcagt ttggagaatg ttgccatgca ccgtacgcca gacagtaaag gtctctgcct
      421 gaccattttt caccgtaatg gtttcctcac ggcttaacat tttcacccac ttacaattat
      481 ataagtagta gcctggtttc tctgccgaca gccgttcagc aaaaatatcg acatcatcgc
      541 cgaaacctgc cgttgatccc caggaaatca caccattatg accaaaaacc agcccaggat
      601 aggcaaatgg tgtattgcca gtgacatcat aaccagcacc gtgcagacca ataccataag
      661 tatacgcagg cgcataccag ccaaactgcg gaccatttac catgattgct ttcgcatcct
      721 gggctttgct tttgccgatc acccacatat tgctggtcgt tggatacccc gccagaccat
      781 tggcaccacc ctgtgcaaat tgtgcagcaa tagtttcccg gttcttccct gctgttaacg
      841 ccagcagtgc gccatccgcc ccttttgctg gtcggtcaag cattggtgca ggtaaatcgt
      901 agcgtggcaa cagagctgct gtttgcgagt tttgctgatt aaatttaagt gggtagctac
      961 tctcttgtac ggcaatagtg gttggcgctg atgggtttac cagccatttc aactgattaa
     1021 ataccgccat gccttgtgat acaccatatt tatcttttaa agccgttagc agtgccagat
     1081 tatcaatttc gctagtgcta tcagagaagc ggtttgccat ggtgcccaca aatatcatcg
     1141 cgacatcaaa cggttcccag cgcttaggag taaagccaaa tgtattaaac tgttttggta
     1201 agagcgtctc tggattggta tttaccttat caatccaggc attcattcca tcagcgtagc
     1261 cttgcagaat ggacatatcc tctggggaaa gggcatcaat ttgcgcccgg atagcatccg
     1321 gccagtagtt acgacggata tctttatcaa atttca
//
LOCUS       DAJVUP010000314         1328 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.322, whole genome shotgun sequence.
ACCESSION   DAJVUP010000314 DAJVUP010000000
VERSION     DAJVUP010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1328
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.322"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..692)
                     /gene="ospC2"
                     /locus_tag="OQQ75_004285"
     CDS             complement(<1..692)
                     /gene="ospC2"
                     /locus_tag="OQQ75_004285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC2"
                     /protein_id="HCS1978379.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLT"
     gene            1117..>1328
                     /locus_tag="OQQ75_004286"
     CDS             1117..>1328
                     /locus_tag="OQQ75_004286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1978380.1"
                     /translation="MARYDLPDEAWTIIKPLLPPEPTTPRAGRPWAEHRKIINGMFWV
                     LCSGAPWRDLPERYGAWKTVYNRFNR"
BASE COUNT          410 a          230 c          248 g          440 t
ORIGIN      
        1 tcggttaatg tcatatatcc atatggagag tcatgatcaa tgatatacgc attagcacca
       61 aaatccacag tatgatgtgt tttatttagt gggagtgttt cttgatgatt ggaaatttca
      121 accccaaaaa aaacaaaatc gtggttagct atttcttcaa tatcctcaga gaatgtgttt
      181 ttatatgttt gtatattctc agacttaatt ttatcaaagg acttaatatt aagagtatta
      241 tttgacaggt tagcgttact ttgatgtctg aagttaaaat cagaattaat aataatagag
      301 agcaagtgac gttcatccga agaaagagga tgagtttttt gtattatttc agaaagatag
      361 tgtctggaca ccttatcgag gtgctcaagt gaccgaaatg atgaccgtgc tccagatggc
      421 gcttcaatag aaagatttaa tgatttgaaa ctggtccctt gagagaacat tttactataa
      481 ctttgcgctg ctatagactt ccttaaaaag cttttcacag tatcagcaca gtgatctaaa
      541 tgtttttcac ttatgccaga agaggatgag tttgttacgc atgatatgtt tttttgtaat
      601 gcttttgtat ctttgttcgg atttattttt ccatcaacaa gatcaatatt gttctgaaca
      661 ttaatatgat ttactgcttc aggtattttc ataaaacatc ccccattatg tgcgttttta
      721 tctgcagtta tttagaataa aattatctaa cttaatattt tcttgtatgt attataacga
      781 acatatttta atatgttgta cgattttcac tctgaaatcc cctgagttta atcacacttc
      841 ctttactgaa aggaattatt gcaacagtat tatttgtttt tggatatata tcttgcgcct
      901 tgttatgtag ttaatgctca gaatatgata gataaaatag agacgcagaa cagggcatgc
      961 tcataacatg atgataacat aaaaaattag taacaataaa tgaaagaatc atgggcgctc
     1021 aacaaaaaga gagctaaata gctgcgcgga atagtaggct gtgtccctta atcatctgag
     1081 ttatagtaac tgtctgttta cacaacatat tgaactatgg ctcgctacga ccttcccgat
     1141 gaggcatgga ccatcatcaa gcccctgtta cctcctgaac ccaccacacc acgggccgga
     1201 cgcccatggg ctgagcaccg taaaatcatc aatggcatgt tctgggtgtt atgttccggt
     1261 gcaccatggc gcgatttacc cgaacgatat ggggcatgga aaactgttta taaccgcttt
     1321 aaccgatg
//
LOCUS       DAJVUP010000315         1309 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.323, whole genome shotgun sequence.
ACCESSION   DAJVUP010000315 DAJVUP010000000
VERSION     DAJVUP010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.323"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            392..1180
                     /gene="virF"
                     /locus_tag="OQQ75_004287"
     CDS             392..1180
                     /gene="virF"
                     /locus_tag="OQQ75_004287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858179.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family invasion system transcriptional
                     regulator VirF"
                     /protein_id="HCS1978381.1"
                     /translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
                     IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
                     KKIFLLSGEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
                     DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
                     LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
     gene            complement(1122..>1309)
                     /locus_tag="OQQ75_004288"
     CDS             complement(1122..>1309)
                     /locus_tag="OQQ75_004288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HCS1978382.1"
                     /translation="APQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAFK
                     IFYDISKISLELYHNIH"
BASE COUNT          448 a          210 c          227 g          424 t
ORIGIN      
        1 cacggaaagt catactgcct taccaatatc aacaccaacc ggatttgtgg agcctccagt
       61 ctgaaggggc tttatgcgtt ccgtatagga tattatgatg ctggagtttt gcgaagctcc
      121 actcctttcc gaacatttac acagatattg cctaagaaaa gtgaaaccat aatatggtta
      181 tagtcccttt cagtgcaaat acttagcttg ttgcacagag aaatagaagc tgcataagct
      241 ctttcttcaa aaaatgtaaa taaagttaaa tataggaaaa attacttaat ctatcttaat
      301 aacggaaaga ttttgtatac aatcactgtt acagaaattt cttagttact ctgtaaacac
      361 taaatatagt ttggtatatt ctgttgaatt tatgatggat atgggacata aaaacaaaat
      421 agatataaag gttcgcttgc ataactatat tattttatat gcaaaaaggt gttcaatgac
      481 ggttagctca ggcaatgaaa ctttgactat cgatgaaggg caaattgctt ttatagagcg
      541 aaatatacaa ataaacgtct ccataaaaaa atctgatagc attaatccat ttgagattat
      601 aagccttgac agaaatttat tattaagcat tattagaata atggaaccaa tttattcatt
      661 tcaacactcc tattctgagg agaaaagggg gttaaacaaa aaaatattcc tcctctctgg
      721 ggaggaggtt tctatcgatt tgttcaaatc tataaaagag atgccttttg gcaaaagaaa
      781 gatctatagt ttagcttgcc ttttatcagc tgtttctgat gaggaagctt tatatacttc
      841 gatatcgata gcttcttctc ttagtttttc tgatcagata aggaagattg ttgaaaaaaa
      901 catcgagaag agatggcgtc tttctgatat ttcaaataac ttgaatttat cagaaatagc
      961 tgttagaaaa cgattggaga gtgaaaaatt aacatttcaa caaatccttc ttgatattcg
     1021 catgcatcat gcagcaaagc ttttattgaa tagtcaaagc tatattaatg atgtatcaag
     1081 acttatcgga atatcaagcc catcttattt tataaggaaa tttaatgaat attatggtat
     1141 aactccaaag aaattttact tatatcataa aaaattttaa atgcttcata gcccatcgct
     1201 attgccagat gggttttccc cacacctgat ggccctagta atacgatatt ttcattacgt
     1261 tctatgaagc tgagtgagcg taacgactgg agttgcttct gcggtgctc
//
LOCUS       DAJVUP010000316         1285 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.324, whole genome shotgun sequence.
ACCESSION   DAJVUP010000316 DAJVUP010000000
VERSION     DAJVUP010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1285
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.324"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..892
                     /gene="pocR"
                     /locus_tag="OQQ75_004289"
     CDS             <1..892
                     /gene="pocR"
                     /locus_tag="OQQ75_004289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="regulatory protein PocR"
                     /protein_id="HCS1978383.1"
                     /translation="SELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMMRQ
                     HPQLSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRL
                     RNDYVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLKLIVENCLKKQLN
                     FVVIKENKSQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYF
                     SKLFKKYHGIGFNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTY
                     QVTPQVYRQQVSENAAMETV"
     regulatory      981..1156
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
BASE COUNT          349 a          271 c          320 g          345 t
ORIGIN      
        1 ttcagaactc attaataaaa tcgcgcagga ttttgcgcag gcgaccagcc ttgcggttgt
       61 cgtggtcaat attcacggcg atgaaatttc cgagctgttt aacttcactc cattttgtca
      121 gatgatgcgg caacaccctc agctaagcac tcgatgtcgc atgagcgatc gttgtggggg
      181 cctggaagcc tctaaatccg atcagccttg tatttatcgc tgtcatgccg gattaaccga
      241 tttctctatt ccactggtaa tcgccgggca tttagtcggt tttgtattgt gcgggcaagt
      301 tcgtctgcgt aatgattatg tcgatttggt cgatattctg aatgtcgatg attgctggca
      361 ggcagatccc gaattactta atgaatttcg caaagttcct gagatggatt actcaagagt
      421 tatggcctct gctgatttgt tgaagttgat tgtagaaaat tgcctcaaaa aacaactcaa
      481 ttttgtggtt attaaagaga acaaatctca gtcagattcg gtgcgccaga ctcgtgcgcc
      541 tagtccccac gacaataaaa tgaaaaaagc tttacgctat attgatgcgc atttatcaga
      601 cgatttgcgt ctggaagatg tcgcctcgca cgtttatcta agcccttatt atttcagtaa
      661 gttattcaag aaataccatg gaatcgggtt taatgcgtgg gtaaaccaac aacggatggc
      721 cagcgcgcgt gagttactgt gccatagtga ctggagcatc gccagcattg cgcgtaattt
      781 aggtttttcg caaaccagtt atttttgcaa agttttccgt cagacttatc aggttacgcc
      841 gcaggtgtat cgacagcaag tgagtgaaaa tgcggcgatg gaaacggtat agagtaaatg
      901 ctaaaaaaag ggaaggttta aataaacgct ggaatgaata attaacgtta tttacgtgtt
      961 atgggaaaag taaaatcagc tcataacata cgctgacagg tgtggcacat ttgtgcctgg
     1021 gaagagagtg aaaatccctc gcagcccccg ctgctgtaat gctgacaaac ccgaaaatgc
     1081 cactgatcgc gagattggga aggtcgggag aggatgacgc taagccagaa gaccagccag
     1141 tcagtcaata ccaacaactt cggtgggaag tgggttgccc ggaagcgtcc ggtagagtac
     1201 aggcgcgtct ttatacccct accaccctga aaggatcagg gtatggcggc atcatttagt
     1261 tctttcatcg cagtgccgac aggca
//
LOCUS       DAJVUP010000317         1272 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.325, whole genome shotgun sequence.
ACCESSION   DAJVUP010000317 DAJVUP010000000
VERSION     DAJVUP010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.325"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            220..1167
                     /locus_tag="OQQ75_004290"
     CDS             220..1167
                     /locus_tag="OQQ75_004290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001361319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS1978384.1"
                     /translation="MKNVLVTVPSFSARCVSASKLLRENNFNLIIKNNVEHLLKSEST
                     ALRESICAVIAGKDCYQADTLSLLPGVKIISRFGTGIDNIDLRAAQQSGIVVNNAVGI
                     NSNAVAEFIIGLIFASMRNIPGSYHAMQNGYWGESHGYELQGKRIGMVGYGNIGKTLA
                     KRLSGFDVELLAYDKQPDYQVADKVGVQFVSIEDIFMQSHVIIVLLPFSPELENFISH
                     KYLSMMRNGALIINAARGKLLDEGALLQVIEERNVFAALDVFSSEPLAQFSPLLHAKN
                     IITTPHIAAATVESYQQTGTHVAQSIIDYFAGREIKNVL"
BASE COUNT          345 a          246 c          309 g          372 t
ORIGIN      
        1 aggtttagca ccgtcatgct cgtctactgt tgttctggtt gttggtgatg cggtggcgct
       61 tgcactctct gaattgaaaa aatttactcg tgctgatttc ggcttatatc atccaggagg
      121 tgcactcggc attaaagcaa attcataatt tcaaagtata aatacagtga ccggtcacgc
      181 catcttttgg ggtggcgttc attgaagtga gtgtcagcta tgaaaaatgt tctggtcacc
      241 gtccccagct tttcagcacg ctgtgtttcc gccagcaagt tgctaagaga gaataatttt
      301 aatcttatta ttaagaataa tgtggagcat ctgcttaaat cagaatccac tgcattacga
      361 gaatctattt gcgcggtcat cgccggaaaa gattgttatc aggcggacac gctatcattg
      421 ctgcctggtg tgaaaataat atcgagattc gggacgggga tagataatat tgatcttcgt
      481 gcagcacaac aatccggtat tgtagtcaat aatgcggttg ggattaattc aaatgctgtc
      541 gcggaattta tcattggact tatcttcgcg agcatgagaa atattcccgg cagctatcat
      601 gcgatgcaaa atggctactg gggtgagtcg catggctatg aattacaagg caaacggatt
      661 ggcatggttg gctacggcaa tataggtaaa accctggcaa aaaggttatc cggttttgat
      721 gttgagcttt tagcttatga caaacaaccc gattatcagg ttgctgacaa agttggagtt
      781 cagtttgtat caattgaaga tatctttatg cagtcgcatg tcatcattgt tcttttgcct
      841 ttttctcctg agctggagaa cttcattagt cataaatatt tgtcgatgat gcgcaatggt
      901 gctctaatca tcaatgccgc aaggggaaag ttgctggatg agggcgcttt actacaggtg
      961 attgaagaac gaaatgtgtt tgcggcgctg gatgtgttta gctctgaacc gttggcgcaa
     1021 tttagcccac tgctacatgc caaaaatatc attacaacgc cgcatattgc ggccgccacc
     1081 gttgagtcat accagcaaac cggtacacac gttgcccagt cgataattga ttacttcgca
     1141 ggaagggaga taaaaaacgt gttgtgagtt cagcgaacga agtttttaaa tacaaaaaaa
     1201 ccgcaatttg tggaacacat tgcggtttat cagcattcta agtattggtt gcgggggccg
     1261 gatttgaacc ga
//
LOCUS       DAJVUP010000318         1266 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.326, whole genome shotgun sequence.
ACCESSION   DAJVUP010000318 DAJVUP010000000
VERSION     DAJVUP010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.326"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            14..172
                     /locus_tag="OQQ75_004291"
     CDS             14..172
                     /locus_tag="OQQ75_004291"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978385.1"
                     /translation="MYLSRISEAISLSAGEVAHRLIVPSSDIDLGETELPVLGEITWQ
                     AYDPARSK"
     gene            172..762
                     /locus_tag="OQQ75_004292"
     CDS             172..762
                     /locus_tag="OQQ75_004292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HCS1978386.1"
                     /translation="MDSLQDDYTKLLYGLMQPGPAWSDTDGVLDGLAPSLVRVHQRAD
                     ELVIEIDPGQSTELIERYEELYGLPDSCSPVGTQTLRQRQQRLEAKANVAGGINEQFF
                     LDQLEALGYTGVTIEQFQHLDASPDPEWGDRWRYFWRVTLPVDAGAQWQTCTDACNTP
                     IRTWGDTVAECVINKLYPSHTVVLFSYPDEDEDAQD"
     gene            749..>1266
                     /locus_tag="OQQ75_004293"
     CDS             749..>1266
                     /locus_tag="OQQ75_004293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000554745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978387.1"
                     /translation="MHRIDTLTAVKDKFGPGKNGFTDGNLRTGRLATWLNSAMWNAIQ
                     EEICGVIEKAGIELNKEEHDQLYKAILLLVGGAINEEALLIKNNLSDVEDRDEAVENL
                     GLKPTVDKAKNAVQRDGDTMTGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEG
                     QGENGDIGPLRP"
BASE COUNT          315 a          278 c          372 g          301 t
ORIGIN      
        1 gccagagggg cgtatgtatc tgtccagaat cagtgaggcc atcagtttgt ctgctggtga
       61 agtggcccac cggttaatcg tcccttcatc ggatattgac ctgggggaga ccgagcttcc
      121 ggtgctcggc gagatcacct ggcaggctta tgacccggca aggagtaaat aatggattcg
      181 ttacaggatg attatacaaa gctgctgtac ggactgatgc agccggggcc tgcatggtca
      241 gataccgacg gtgtacttga cggtctggca ccatcgcttg tgcgtgttca ccagcgggct
      301 gatgaactgg tgattgaaat cgatcccggt cagtccacag agctgattga acgttatgaa
      361 gaattgtatg gtttacctga ttcctgttcc cctgtcggaa cccagacatt acgccagcgt
      421 cagcaacgtc ttgaagcaaa agccaatgtg gctggtggca taaatgagca gttcttcctg
      481 gatcagcttg aggcgctggg atataccggc gtaacgatcg aacagttcca gcacctggat
      541 gcaagccccg atccggaatg gggagatcgc tggcgttatt tctggcgtgt gacgttgccg
      601 gtggatgccg gtgctcagtg gcagacatgc acggacgcct gcaacacacc gatccggacg
      661 tggggggata cggttgcgga gtgcgtgatt aataaattat atccgtcaca caccgtcgtt
      721 ttattttcct atccagatga ggatgaagat gcacaggatt gatacgctga ctgcggtaaa
      781 agataagttt ggtccgggta agaacggatt tactgacgga aatcttcgca caggacgtct
      841 tgctacctgg ctgaacagtg ccatgtggaa tgccattcag gaggaaatct gtggtgtcat
      901 tgagaaggcc gggatagaac tgaataaaga agaacacgac cagctatata aggctatatt
      961 attgctggtg ggcggtgcaa ttaacgaaga ggcattgctg ataaaaaata acctttcgga
     1021 tgtggaagac agggatgagg ctgttgaaaa cctcggatta aaacccacgg tggataaggc
     1081 aaaaaatgcc gttcagcgtg atggcgacac catgaccgga gagctgaaaa tccgtggtgt
     1141 taatgcgctg aggattttca acgaagcttt tggcctgatt tttcgtcgtt cggaagagtg
     1201 cctgcacctt attcccacca gtgaaggtca gggggaaaat ggcgatattg gtcccctgcg
     1261 cccgtt
//
LOCUS       DAJVUP010000319         1264 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.327, whole genome shotgun sequence.
ACCESSION   DAJVUP010000319 DAJVUP010000000
VERSION     DAJVUP010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1264
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.327"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..1264)
                     /locus_tag="OQQ75_004294"
                     /pseudo
     CDS             complement(1..1264)
                     /locus_tag="OQQ75_004294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246439.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          373 a          355 c          281 g          255 t
ORIGIN      
        1 tgccaaccag taaaacgctt cagttttcaa cgcaccccac agcatcggcc agaaaatgag
       61 tcctgcaatt gcccctgtgc gcataatagc gcgggcaaat ccgaccccag tagggcgaat
      121 agcgggaaga taagagagtg tggcaatggt catgcccagc ccaccaggac ccgctgaatg
      181 gaagaaaata attgatccca ataaccctaa agacagccag ggattagtcg ttgccagtgc
      241 gcctaacgac agcaatgcta aggtcacaac agcaaatcca tacatcgact gtcggcgagt
      301 acccagtcgt tggagaataa acgagccgat catcccgcct gtcaccccac aaagggcatt
      361 cacgacggca gaaccggtca acgcgccagt aagcccgcca cttattattc ccgccaacgt
      421 aagaggaaga taaacaccta cggcgttata ttgccacgcc tgcatggttg ccacgacaca
      481 gccaagaatg gtgcgtttgc ggtaacgatc attaaataag atgccatatc caccactgta
      541 tttattctct gctttttccg agaatttcgc ttctgttgta cccgatgccg caacgcgagc
      601 ctgaacacca taacgttttc ccagaatgtc gcacgcttcc tggtaacgcc cgacgcgtgc
      661 ggcccacatt gcggattcac caataaagaa gtaacgcaaa atcatgaaga tgactgcaaa
      721 aatagctccg atgaatattc cgtaacgcca caattgttct tcagcgatac ccgacagaag
      781 cagcggcaaa agtaccaaat aaacaacggt tgtcgaaaca taccaggcca tttgccagag
      841 gttgaccgac gttccggttt tcttcgacgt tgaaccacga agctctgcca cggcattggt
      901 tgccaaaggg aagtcgatgc ctaaaccaaa gcccatgatg acgcggcaca ccagcaccca
      961 ccagatactg ggagcaatag ctaccgctgc agcaccgatg gtgcacagcc ccatgccaat
     1021 aataaatgcc cgcttttgcc caaagcggtt tattactcgg ttcgctaata aaccgccaat
     1081 taacgcggcg attaatactg atgcattgac ggttgcagca agacccggcg aaatgccgaa
     1141 ttgagcggca atgtatttat taccaaaccc caccatcgcc gcctagtagg catcaatcaa
     1201 tatgccgccc aaagcaataa aaataacgcc gatactggtg ttgattgcag agttcttatt
     1261 aaca
//
LOCUS       DAJVUP010000320         1259 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.328, whole genome shotgun sequence.
ACCESSION   DAJVUP010000320 DAJVUP010000000
VERSION     DAJVUP010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.328"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..330
                     /locus_tag="OQQ75_004295"
     CDS             <1..330
                     /locus_tag="OQQ75_004295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1978388.1"
                     /translation="FRTRIKLFYRPDGLKGNPSEAPLALKWFWSGSEGKASLRVTNPT
                     PYYVSFSSGDLEASGKRYPIDVKMIAPFSDEVMKVTGLNGKASSAKVHFYAINDFGGT
                     IEGNASL"
     gene            365..1259
                     /locus_tag="OQQ75_004296"
                     /pseudo
     CDS             365..1259
                     /locus_tag="OQQ75_004296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414681.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
BASE COUNT          361 a          267 c          271 g          360 t
ORIGIN      
        1 tttcgcacac gtataaaact tttctatcgc ccggatggat tgaagggaaa tccctctgaa
       61 gccccgttag ccctgaagtg gttctggtca ggttcagaag gtaaggcgtc attgcgagtg
      121 accaatccaa ccccttacta cgtctctttt agcagtggtg atttagaagc tagcggtaaa
      181 cgctatccga ttgatgtgaa aatgattgca ccatttagtg atgaggtcat gaaagtcact
      241 ggccttaatg gcaaagcaag ttctgcaaaa gtacattttt acgccattaa tgattttggt
      301 ggcaccattg aaggtaatgc cagtctgtaa tcaggcaagg atataattcc gcaggaagca
      361 taacgtgact ataaaaccaa ctaaaaatta tcataatcat ctgacccgta tcgctacgtt
      421 ttgcgcgctg ctgtattgca atagtgcttt ctgtgctgaa cttgttgaat atgaccatac
      481 cttcctgatg gggcagaatg cctcaaatat tgatctcagc cggtatagtg aaggtaaccc
      541 tgctataccg ggtatgtacg acgtcagtgt ttatgtcaac gatcaaccta ttattaacca
      601 aagcattaca tttattgaaa ttgaaggaaa aaaaacgcac aagcctgtat cacacttaag
      661 aatttattgc agtttcatat aaattctccc gatataaata acgaaaaagc cgttctgctt
      721 gccagggatg aaacactcgg caattgcctt aatttgacgg aaattattcc tcaggcttct
      781 gttcgttatg acgttaacga gcaacgtctg gatatagacg ttcctcaggc atgggtaatg
      841 aaaaattacc aaaactatgt tgatccatcg ttatgggaaa atggcattaa tgcggccatg
      901 ttgtcataca acctcaacgg atatcatagt gaaactcctg gtcgaagaaa tgacagcatt
      961 tatgctgctt ttaacggtgg gatgaattta ggtgcatggc gactgcgtgc ctcaggcaac
     1021 tacaactgga tgaccgattc tggcagtaat tatgatttta agaatcggta tatacagcgt
     1081 gatatcgcct cgctgcgttc tcaactcatt cttggtgagt cttatacaac gggcgaaacc
     1141 tttgattctg tcagtatccg cggcattcgt ttatacagcg acagccgcat gttgcctccg
     1201 acattagcga gttttgcgcc tatcattcat ggcgttgcta ataccaacgc caaagtcac
//
LOCUS       DAJVUP010000321         1239 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.329, whole genome shotgun sequence.
ACCESSION   DAJVUP010000321 DAJVUP010000000
VERSION     DAJVUP010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.329"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..549)
                     /locus_tag="OQQ75_004297"
     CDS             complement(<1..549)
                     /locus_tag="OQQ75_004297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA"
                     /protein_id="HCS1978389.1"
                     /translation="MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQS
                     ELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF
                     TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSR
                     VIMEGHQGDEYDEALSTLAELED"
     gene            919..>1239
                     /locus_tag="OQQ75_004298"
     CDS             919..>1239
                     /locus_tag="OQQ75_004298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978390.1"
                     /translation="MAHRLLIGKGMITLNLKRIFLTLTLLPLFSVAADDCALSDPTLT
                     VQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLG
                     LYIEN"
BASE COUNT          323 a          317 c          305 g          294 t
ORIGIN      
        1 atcttccagt tccgccagcg tggagagcgc ctcatcgtac tcatcgccct gatgcccttc
       61 cataatcacc cggctcaact gctccaggtc gctatagata ttttcaattt catctgccaa
      121 ctgttcgatt ttggtttcga acagatccag cagcagctcg taggcgttac cgtctaccat
      181 cgactggcta cgggcacgca tacgatacag acgaaaagcg ggcagttcac gctcacgcag
      241 agtaaacaga cgaccatcac ggatggtaaa tgccacagtg gagttaccgg cgtgatcttc
      301 cgcatcttca aagaagaaga aggagtgaat atgcaggccg tcgtcgtctt caaagaaacg
      361 tgccgatgct tcgatgtctt ccagttccgg gcgggttgcc aggctctggc caagttcaga
      421 ttgtacacgc agtcgctcgt cgtcgtccgg ttcgacaaga tcaatccata ctgcatttac
      481 aaggggttgt gactcttcga cttccagccg ggtcagtcgg ttattttcca gttgaaatgc
      541 gctcagcatg accgggactc ccaatgctta aaatatcgga cagttcggtg ggcacacaga
      601 aacaaattgg gtttcagacc attaaacagc ctgactcagc gcgacgggaa aaattgaggt
      661 cgctgacaac cgctaaggct atcagcaaaa agggatagcc ttaggagttg atcctggatg
      721 acaggatagt gagccagtat ctactgggtg tgtccaaggc gaatgtcctc ttagaatgat
      781 cgtgcgcgca tgttacgcca gcaaaatttt gccgtcaaca cgcaacagaa caccacagaa
      841 caatagttga acttcgcgct ttttggtact cctcaaggtc gctaacagga taaaaaaatc
      901 ccacatccag gacctataat ggcgcatcgg ctactcattg gtaaaggaat gatcaccttg
      961 aatctcaaac ggatttttct caccctcacc ttacttccct tgttttctgt tgccgctgat
     1021 gattgcgcac tctcagatcc gacgctgacc gtacaggcgt ataccgttaa tcctcaaaca
     1081 gagcgggtga aaatgtactg gcaaaaagcc aatggcgaag cgtggggaac gttacatgct
     1141 ctgctggcgg atattaatag tcagggtcag gtgcagatgg cgatgaacgg cggcatctat
     1201 gatgaaagct atgcgccgct cggtttgtac atcgaaaac
//
LOCUS       DAJVUP010000322         1234 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.330, whole genome shotgun sequence.
ACCESSION   DAJVUP010000322 DAJVUP010000000
VERSION     DAJVUP010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1234
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.330"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..665)
                     /locus_tag="OQQ75_004299"
     CDS             complement(<1..665)
                     /locus_tag="OQQ75_004299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HCS1978391.1"
                     /translation="MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGG
                     IMLWLPAGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL
                     PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDHLNRNELFTAICSGMASIAGLTMIGYAALGVPVEYLLAASLMAIPGGILFAR
                     LLSP"
     gene            complement(765..>1234)
                     /locus_tag="OQQ75_004300"
     CDS             complement(765..>1234)
                     /locus_tag="OQQ75_004300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HCS1978392.1"
                     /translation="FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVI
                     ARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQEMYV
                     EVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWGLVEECVRGYIKTH"
BASE COUNT          321 a          343 c          294 g          276 t
ORIGIN      
        1 gggcttaaca ggcgagcaaa caagatcccg cctgggatcg ccattaacga tgccgccagc
       61 aaatattcca caggtacgcc cagggcggcg taaccaatca ttgtcaaacc agcaatcgag
      121 gccatgccac tacaaatcgc tgtaaataat tcattgcgat tcagatgatc gataaagggt
      181 ttgacgatcg ccggaatttc gttttgcccg aggaaaatgg tggtgaccgc gacgaatgac
      241 tcaatcttgc tgatatttaa tgctttctgg aatataccgc cgagaatgcg aattaaaatc
      301 cccatcacac cgatgtagta gagaatactc accagtgcag tgacgaagat aattgccggt
      361 aataccctga aaccaaagat aaatcctgcg ccatcaaaca gcgtgtccat tttcggcccg
      421 accagcgaac cgaagataaa tgcgctaccc gcgtcgctgt acgccatcac tttatgcacg
      481 ccaaaagcga ctttttcagc gacccaacgc cctgccggta accaaagcat aatcccgcca
      541 atcacgacct gtaacactaa cgccgcgcca acggtacgca ggctgatctt cttcttgttt
      601 actgacagca aaaacgcaat cgtcagcaat accaccattc ccagaacact tctcatgaca
      661 tccatagtta ttatctcttc atgtcatatt gggcgacggc tttctgccca tcagaaatag
      721 ccgggcttgg atcttgcgat actgacccgg cttgttatca acacttaatg ggttttgatg
      781 tagccgcgca cgcactcttc gactaagccc cagaaccagt cggtatcaat agtgatgccg
      841 actttggtat tagcgggctt gccaagaacg cccagctcgt cgcagacggt acgcccatag
      901 caagggccac tgttgacgtc cacttcgacg tacatctcct gggttttaat gccatcaggg
      961 ttaatcagat aaccgatgca ggtggcgtcg tgcaccgggc cgccagccag gccgtagttt
     1021 tcgaactgcg ttttgagagt gaagttcatg atgtcgctga acagctctcc ggcagggccg
     1081 cctgcccttt ccatccgtgc aatcacgtcc ggggtgcaaa cagtctggtt ggtgagatcg
     1141 aggcccatca tcactaatgg aacgccggag gtgaacacca cgcgggctgc ttccggatca
     1201 gcaaagatgt tgaactcggc agatggcgtg aagt
//
LOCUS       DAJVUP010000323         1227 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.331, whole genome shotgun sequence.
ACCESSION   DAJVUP010000323 DAJVUP010000000
VERSION     DAJVUP010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.331"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..258
                     /locus_tag="OQQ75_004301"
     CDS             <1..258
                     /locus_tag="OQQ75_004301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978393.1"
                     /translation="LNYGNFDARYKHRTEGVQDVRYGYEMYYNPGSNTVSWTFRSPSG
                     HGLSGISISDTGRNSADNVNGVYYRPLQKLINGIWYNVASI"
     gene            261..806
                     /locus_tag="OQQ75_004302"
     CDS             261..806
                     /locus_tag="OQQ75_004302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1978394.1"
                     /translation="MLHLKNITAGNPKTAEQYQLTKQYDVTWLFSEDGKNWYEEQKNF
                     ASDTIKMVYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFV
                     FDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFS
                     AITDKSSYNAIEWPVSPEGSS"
     gene            830..>1227
                     /locus_tag="OQQ75_004303"
     CDS             830..>1227
                     /locus_tag="OQQ75_004303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1978395.1"
                     /translation="MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTG
                     NNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDDSKPGTLNDFLTAPDEGDLKPDV
                     VKRFEEMVAQAQQSAGAAAGNAQQTAQDVAA"
BASE COUNT          333 a          279 c          341 g          274 t
ORIGIN      
        1 ttaaattacg gaaacttcga tgcccgctat aaacatcgaa ctgagggggt acaggatgtg
       61 cggtatggtt atgaaatgta ttacaaccct ggcagcaaca ccgtttcatg gacgtttcgc
      121 tcaccttcgg gacacgggtt gtcagggata tcgatatcgg ataccggccg taactcagcg
      181 gataacgtca acggtgtgta ttaccgaccg ctgcaaaaac tgattaatgg catctggtat
      241 aacgtagcga gtatttaaca atgttgcatt taaaaaatat tacggcaggt aatccgaaaa
      301 ccgcggaaca atatcagctg acaaaacagt atgatgtcac ctggcttttt tcggaagacg
      361 gcaaaaactg gtatgaagaa cagaagaact ttgccagtga caccataaaa atggtttaca
      421 ccggagacgg gcgcgtggtg tgggtcggta aggatgtgac aggcattgaa ccccgtaacg
      481 ccagtgttat tgaagttcct gatattaccg ccaaccgccg cattaccgcg ccgggttact
      541 ggttttaccg caatgatgaa tttgtctttg actacagact caaagcggaa gatgagcgtg
      601 atgcccttct ggctcaggtc agtgcccgga caggggaatg ggaagaagac ctgctgctgg
      661 ggctaatcag cgacgaagac cgggaaaaac tgaaagcgta ccgtatttac gcgaaatcgc
      721 tgcaggcgat ggatttcagc gccatcactg ataaatcctc atacaacgcc attgaatggc
      781 ccgtctctcc ggaaggttct tcctgattta atttatcgcg agaaaaacta tgtctgtagt
      841 gatatcaggt gcgctgactg atggcgcagg catccccatg tccggatgcc agattattct
      901 gaaatcccgt gtaaacacct cagaagtggt gatgcgtacc agggctgatg tagtgaccgg
      961 aaataacggt gaatattcgt ttgaggcaca ggtcggaaaa tattgcgtgt atctgaaacg
     1021 ggactggcgc gacgagtact gtgttggcga cattgctgta tacgacgact caaagcccgg
     1081 cacgctgaat gactttctga ctgcccccga tgaaggcgac ctgaagccgg atgtcgtcaa
     1141 acgctttgag gaaatggtgg cgcaggcgca gcagagcgcc ggggccgcag ccggaaacgc
     1201 acagcagacg gcgcaggatg tggcggc
//
LOCUS       DAJVUP010000324         1202 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.332, whole genome shotgun sequence.
ACCESSION   DAJVUP010000324 DAJVUP010000000
VERSION     DAJVUP010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.332"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..239
                     /locus_tag="OQQ75_004304"
     CDS             <1..239
                     /locus_tag="OQQ75_004304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1978396.1"
                     /translation="AQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTD
                     KWQRRTHSLWRHQAWHASAFTGIYNDLVAASTFV"
     gene            176..778
                     /locus_tag="OQQ75_004305"
     CDS             176..778
                     /locus_tag="OQQ75_004305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000090847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1978397.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLNE
                     GWYQVRIAGRDAGENELSARLNEPLANGAVIHIVPRLAGAKSGGVFQAVLGAALIATA
                     IWMPGISIAFSNILFSMGAAMTLGGVAQMLAPKPKTPRTQTTDNGKQNTYFSSLDNMV
                     AQGNVLPVLYGEMRVGSRVASQEISTADEGDGGQVVVIGR"
     gene            851..1189
                     /locus_tag="OQQ75_004306"
     CDS             851..1189
                     /locus_tag="OQQ75_004306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001332187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978398.1"
                     /translation="MNKTILFCTIIALTGCKSLDYVKSGKPVMEGNSLKNIDELSGCI
                     SRQWAGNGTPITSLPIENGVSLLVPQAMGGYDVVLDIKKAGNGSSFTLYERVPALTPK
                     IFADSVNACK"
BASE COUNT          306 a          264 c          317 g          315 t
ORIGIN      
        1 cggcgcagcc gggcgatgtg ctgctgtgct gttttggttc atcggtgccg aatcatgccg
       61 ccatttactg tggtgacggc gagctgctgc accatattcc tgaacaactg agcaaacgag
      121 agaggtacac cgacaaatgg cagcgacgca cacactccct ctggcgtcac caggcatggc
      181 acgcatctgc ctttacgggg atttacaacg atttggtcgc cgcatcgacc ttcgtgtgaa
      241 aacgggggcc gaagccatcc gggcgctggc cacacagctc ccggcgtttc gccagaaact
      301 gaatgagggc tggtatcagg tgcgcattgc cgggcgtgat gcaggcgaaa atgaattatc
      361 tgcccgtctt aatgagccgc tggcaaatgg tgccgtgatc cacatcgtac cgcgtctggc
      421 gggtgccaaa agtggtggtg tttttcaggc agtgctgggt gcggcgctga ttgctacggc
      481 aatctggatg ccaggaatca gtatcgcttt cagtaacatt ctcttttcta tgggggcagc
      541 gatgacgctt ggtggtgtcg cacagatgct ggcccctaaa cccaaaactc cacgtacaca
      601 gacaacggat aacggcaaac agaacaccta tttctcctca ctggataaca tggttgccca
      661 gggcaatgtc ctgcctgttc tgtacggtga aatgcgcgtg gggtcacgtg tggcatctca
      721 ggagatcagc acggcagatg aaggggatgg tggtcaggtt gtggtaattg ggcggtaata
      781 ttatttactc atgttctaac tgatttaata tttatatcga acactgataa ttattctatt
      841 ggttagctat atgaacaaaa cgattttatt ctgcacgatt attgccttaa caggatgtaa
      901 atctttggat tacgtaaaat ccggaaaacc tgtaatggaa ggtaattcat taaaaaatat
      961 tgatgaattg tcaggctgca tatccagaca atgggctggt aatggaacac ctataacatc
     1021 ccttcctatt gagaatgggg taagcctttt agttccacag gctatggggg gatatgatgt
     1081 tgtgcttgat atcaaaaaag caggaaatgg cagtagtttt actctttatg aacgtgtacc
     1141 agcattaacg ccaaaaattt ttgctgatag tgttaatgca tgtaaataat agttaatcct
     1201 gc
//
LOCUS       DAJVUP010000325         1199 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.333, whole genome shotgun sequence.
ACCESSION   DAJVUP010000325 DAJVUP010000000
VERSION     DAJVUP010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.333"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ75_004307"
     CDS             complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ75_004307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH4.5"
                     /protein_id="HCS1978399.1"
                     /translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
                     TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
                     LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
                     LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQRLKYLKVGENQLRRL
                     SRLPQELLTLDVSNNLLTSLPENIITLPICTNV"
BASE COUNT          341 a          214 c          259 g          385 t
ORIGIN      
        1 ttaacattcg tacaaatggg caatgtgatt atattttcgg gtaatgaagt tagtaggtta
       61 ttggaaacat ccagtgtcaa tagttcttgc ggtaatctgg ataatctgcg tagttgattt
      121 tcacctacct tcaaatattt taagcgctga ggaaattctg gtagttcctg tagtctgttg
      181 ccggaaacaa agagttcttg tagtctatga ggcaattcag gcaagacagt aaggcgatta
      241 ccttcaatac gtaatattgt tagcgttgat ggaagctctg gtaacgtctc cagactatta
      301 aaacgtgccg agagtgattg taaatatggt ggtaatgatg gcagacatga caaatttcga
      361 ttgaatgaaa tattaagctt aatcagttga gatggaagtg tcgggagtat attcaagttg
      421 ttaccattta catgaagttc tgtcaaaagc ggagaatttt caggtaggga gattaactca
      481 ttgttggaaa tattaagttc acgtatatgc aaagggagtg gtggtaaaga acgtagtttc
      541 agtaagctta aattgagaac aggctcccgg gtatccagac atattttcaa taatcgaacc
      601 gcctggatgc gattttctgt tgttgttcct tccctagccc agtcatccca gatgcggtgg
      661 taatctctgg tacactgttc ttctaccgat aaacgagata tacatgataa gccacaaagg
      721 gaacgaaaaa aagaatgatt gttgatcggt ttcatttatt aacccctcac tattcatatc
      781 ttggtctatt aatgcaaata aaacgagaaa gtctttaaaa aaacaatcct agagctttat
      841 cggcgttttc attccagctg gaggaatatg ttcctgtctt tccagtaacc gtcgattgtt
      901 atatcagtct acccatgtta atgtgaccag ttctactttc atccagtttg gattgatctt
      961 tatcccctat attttcaaac aatttttatc atttaactca ttactgtctc gatattccca
     1021 tagcaaacga tctggttggt tagcccctca aaaaagtcag ttgcacgccg taaatccctg
     1081 ccggtattga gcgaggattt acgggttgtt gttaaggtcc gtaatcgggt cacagttttt
     1141 ccggagtcaa tccggtctgc ggtttatgct tatgcgacgt gattatgaat ggtgcagtc
//
LOCUS       DAJVUP010000326         1177 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.334, whole genome shotgun sequence.
ACCESSION   DAJVUP010000326 DAJVUP010000000
VERSION     DAJVUP010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.334"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..488)
                     /gene="csgD"
                     /locus_tag="OQQ75_004308"
     CDS             complement(<1..488)
                     /gene="csgD"
                     /locus_tag="OQQ75_004308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CsgD"
                     /protein_id="HCS1978400.1"
                     /translation="MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ
                     RSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWP
                     HINGVFYSMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE
                     KE"
BASE COUNT          388 a          208 c          223 g          358 t
ORIGIN      
        1 atctcttttt cccgatgagt aaggagggct gattccgtgc tgttataacg atagttacct
       61 gaatgcgtaa tcaagtagct ggcaagcttt tgcgtaaagt agcattcgcc gcgcaggacg
      121 ccttgcaacc cattgacaac acgttcttga tcctccatgg aataaaaaac gccgttgata
      181 tgaggccagt tttcaatgtc gcggtacggg taatcttcag gcgtatttag caacaatatt
      241 ttgatattgt tgtttttcct gctcaaagta tcctgccaat aatggataag ctttttatct
      301 gcttccatca tatccagaag aataatagag cctgaagaga tatcgtccag agaacgttga
      361 atattatgta attttcctgt aattgccagc gattgtttaa ggtgctgcaa gagagctgtc
      421 gcctgcaaag aaggtttagt gatcaacaat aatgtatgac catgaatact atggacttca
      481 ttaaacatga tgaaaccccg ctttttttat tgatcgcaca cctgacagct gcctctaaaa
      541 tagaagcacc agaagtactg acagatgttg cactgctgtg tgtagtaata aatcagccct
      601 aaatgggtaa aatataaaac taatggatta catctgattt caatctagcc attacaaaac
      661 ttaaatcaag cgttaaacat gtaactaaat gtaacttgtt atactaaaat attaacctta
      721 aggttttatt aagtttagaa atgatagaaa agttgtacat ttggttttta ttgcacaatt
      781 ttaaaaaatc atacaaatgg tgataactta ctaataatac atataaaaaa tatttcggtg
      841 tagtcctttc gtcatgtaaa acgttcttgt tttttctccg cacctccgtg gacaaatttt
      901 tactccaaaa agacgaggtt tgtcacggct tgtgcgcaag acatatcgca gcaatcagcg
      961 acgggcaaga aaaatgactg tctggtgatt tttgatagcg gaaaacggag atttaaaaga
     1021 aaacaaaata ttttttgcgt agataacagc gtatttacgt gggttttaat actttggtat
     1081 gaacaaaaaa agaaaaatac aacgcgcggg tgagttatta aaaatatttc cgcagacata
     1141 ctttccatca taacgcagcg ttaacaaaat acaggtt
//
LOCUS       DAJVUP010000327         1160 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.335, whole genome shotgun sequence.
ACCESSION   DAJVUP010000327 DAJVUP010000000
VERSION     DAJVUP010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.335"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..925
                     /locus_tag="OQQ75_004309"
     CDS             <1..925
                     /locus_tag="OQQ75_004309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110-like element ISEc11 family transposase"
                     /protein_id="HCS1978401.1"
                     /translation="RRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQA
                     RFVKAFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQ
                     INALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLENQYNRLNELDSL
                     IEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSGREFAAYVGLV
                     PKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKKRRPASVAI
                     VAMANKLARTVWAITAHDRKYDRNHVSIRPY"
BASE COUNT          324 a          262 c          333 g          241 t
ORIGIN      
        1 gcgtagacag gattttctga cgttcttcgg caaccgtgag ccatgcctga ttggtatgga
       61 ggcctgtgga ggttctcagc actgggcacg ggaactgaca aaacttggtc ataaagtccg
      121 gttgttgcag gcccgcttcg ttaaggcatt cgtcatgggc aataagaatg atgtgatgga
      181 tgcccgggct atctggatgg cggttcagca gccgggtaaa gaaatcgccg taaaaacaga
      241 agaacagcag tcggtactgg ttctgcaccg tacccgcatg caactggtga agttccggac
      301 cgcacaaatt aatgccctgc acgggacgtt actggagttt ggtgaaacca tccacaaagg
      361 ccgggcagcg atggagcggg agttccccga agcactggaa cggatgaaag agagactgcc
      421 accgtatctc attatggttc tggaaaacca gtacaaccga ctgaatgagc tggactcact
      481 gatagaggat attgaaaaac agcttaccag cgtggcgagg cagaatgaaa cctgtaagcg
      541 gttgctggat attcctggcg ttggaccact tattgcgacg gcagcggtgg ccaccatggg
      601 ggaagcatca gcgtttaaat cggggcgaga gttcgccgca tatgttggtc tggttccaaa
      661 acaaactggc tccggaggga aagtacgtct gctggggata agcaaacgtg gtgacactta
      721 tctcaggaca ttatttatcc acggtgcaag agcggtggca ttagtagcta aagagcctgg
      781 cccgtggata accgaactga aaaaacgtcg tccagccagt gtggcaatcg tcgccatggc
      841 aaacaagctg gcacgaacag tatgggcgat aaccgcccat gaccgtaagt atgacaggaa
      901 ccacgtcagt atcagaccat attaatcgct gataccatta aacaatgaac tcttaacaaa
      961 agggtgaatg ctgaaaggtt gctatggcgg ccagagtgat gacaaagaca ggtaagaccg
     1021 tgactcacta aacctgaaca gtattttggg cttgaagtcc gccgtgaaaa taaggggtga
     1081 gtcggcgaat tacatagggg ctcgcagcgt tacggctgca ataaagccgg atataaagct
     1141 gcaacctacc cgtcatgtca
//
LOCUS       DAJVUP010000328         1159 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.336, whole genome shotgun sequence.
ACCESSION   DAJVUP010000328 DAJVUP010000000
VERSION     DAJVUP010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.336"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..337)
                     /locus_tag="OQQ75_004310"
     CDS             complement(<1..337)
                     /locus_tag="OQQ75_004310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HCS1978402.1"
                     /translation="MAHIQLIKQTSSGLLLPATPESCDFLHQIKTGEWIHADFKRVRN
                     YAFHKRFFKLLQLGFDYWTPIGGAITPRERELVSGFVEYLCESVGREHTPALSEAAEQ
                     YLNTVATRRT"
     gene            complement(376..663)
                     /locus_tag="OQQ75_004311"
     CDS             complement(376..663)
                     /locus_tag="OQQ75_004311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978403.1"
                     /translation="MKIEELREIFSENGLYAVRVENGAIVSHCRIRCLQSQQRKSGAV
                     LFYFCNGLLTDGFILREDEFVTSLRVLKEIGFKAGFLLLLKNKLIYNLEQD"
     gene            complement(913..1068)
                     /gene="hokD"
                     /locus_tag="OQQ75_004312"
     CDS             complement(913..1068)
                     /gene="hokD"
                     /locus_tag="OQQ75_004312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS1978404.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     VDYESRK"
BASE COUNT          293 a          302 c          265 g          299 t
ORIGIN      
        1 gggttctgcg tgtcgcaact gtattcagat attgctctgc ggcttcgctc agagctggcg
       61 tatgttcccg gcctactgat tcgcacaggt actcaacgaa gcctgatacc agttctcgtt
      121 cgcgaggcgt aatcgcccca ccgatcggag tccagtaatc gaatcccagt tgcaggagtt
      181 tgaaaaaacg cttgtggaat gcgtagttac gcacacgctt aaagtctgcg tgtatccact
      241 cacctgtttt gatttgatgc agaaaatcgc aactctccgg cgtcgccggg agaagtaatc
      301 cggaagaggt ttgtttgatc agttgtatat gcgccatcgg ctttctccgg tggcacggtg
      361 ttacacagca ggagttcaat cctgctcaag attgtagatg agtttattct tcagcaaaag
      421 cagaaaacca gccttaaaac caatctcttt caaaacccgt aatgatgtga caaattcgtc
      481 ctcacgcaaa ataaaaccgt ccgtcagaag tccattacaa aaataaaata acacagcacc
      541 gctcttcctt tgttgagatt gcaaacatct aatgcggcaa tggctgacaa tcgctccatt
      601 ctcaacgcgc acagcataga ggccattttc actaaaaatt tcacgcaatt cttcgatttt
      661 catcttcaga atccttccag ataaatagct ctcccctgtt cggggtccat ccctcttctc
      721 cctgcgcgct acttaagtga gtcgattcta tctgcgaagg tgcgcgaatc aaattcaccg
      781 gaaataaaca acaaaaaacc cgccgaaacg ctgagagatc acagcgatgg gcgggttaag
      841 tgcgggtgcg ttgaggatgc ctgacacatc agaggtgggc ggggatggga tcagctcccc
      901 gcccggtcac tcttacttcc tggattcgta gtctacgaag acagcgacct ccgtctggcc
      961 ggttcggatt cgtacctcac agaggtcttt cctcgttacc agtgccgtca ctatgacggt
     1021 taaacagatg acgatcaggg cgattaacat cgccttttgc tgcttcatag cctgcttctc
     1081 cttgcctttc ggcatgtaag aggctaacct acatgtgcaa agcatgaaat tggcctcaga
     1141 ttaatgttaa gcgtcttgc
//
LOCUS       DAJVUP010000329         1153 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.337, whole genome shotgun sequence.
ACCESSION   DAJVUP010000329 DAJVUP010000000
VERSION     DAJVUP010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.337"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..261)
                     /locus_tag="OQQ75_004313"
                     /pseudo
     CDS             complement(1..261)
                     /locus_tag="OQQ75_004313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(376..1014)
                     /gene="ospI"
                     /locus_tag="OQQ75_004314"
     CDS             complement(376..1014)
                     /gene="ospI"
                     /locus_tag="OQQ75_004314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspI"
                     /protein_id="HCS1978405.1"
                     /translation="MINGVSLQGTAGYEAHIEEGNVNVKKLLESLNSKSLGDMDKDSE
                     LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
                     DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
                     VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
BASE COUNT          338 a          283 c          174 g          358 t
ORIGIN      
        1 caagcgctgt aactctttta tttgttttat agcggcagcc agttctgagg caggaacgac
       61 atcctctccg gcagcaatag cagtgagact tccttccaga tattattttt tccacttaag
      121 caacaggctg ggctgaatac catgcaaacg cgccacatgg gacaccgtca tgccaggctc
      181 cattgtctgc tgaataatgg caattttttc ctgaggagtt ttacgtttac gaagctccag
      241 ccccagcaaa gttccagtca tctcaaaatt agaactagtg ttagacatat atccaagcct
      301 atctcttatt ttaagataca tccactgtct ggcgtttcaa ggggccggct caaatctatg
      361 tacaggctct cagcatcagc aaagcctctt actcttccaa ctactactgt tagcatagtg
      421 atcaaattcc tgatcagata catgaattac ctgaaccgaa ctattttcat ctacaaatgc
      481 atctggcgat ttttctacag gatcataaag attaaatccc tttcctgttt gaacatccaa
      541 aaacataatt ttttcaccat cgttaaatcc agctatccaa tgagtggcct gttcaataga
      601 aatcattact acacttcctt ttgaagtgtt ttgtaaaata ttttctgcaa tacgctcacg
      661 aaatttacta taagtttcat taggatgtga cactatgcct tcactatcaa tttgctctaa
      721 atgcctatga aaaaatccgg tcatatactc tgatatttca ttaggtacgg gagcctctct
      781 tactccatac cctaacatag ccatacaagc atgaagcgca caccctgaac agttaccatc
      841 cccaccagac ggatttatca ttttctgtaa agtcgctgcc aattcagaat ctttatccat
      901 atcaccaaga cttttagagt ttaaagattc cagcaatttt ttaacattta catttccctc
      961 ctctatatgt gcctcatatc cagcagttcc ctgtaacgac accccattaa tcatattgta
     1021 tcctgacagt atatatactc actatatttt cttcataaca aatatccctc tgatatgaca
     1081 acaaaaaacg gagccggatt cctgtttttg tgaactgcag ctattcgagt ctaaaaagtg
     1141 atccacttac cac
//
LOCUS       DAJVUP010000330         1146 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.338, whole genome shotgun sequence.
ACCESSION   DAJVUP010000330 DAJVUP010000000
VERSION     DAJVUP010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.338"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..695)
                     /locus_tag="OQQ75_004315"
     CDS             complement(<1..695)
                     /locus_tag="OQQ75_004315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1978406.1"
                     /translation="MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGE
                     NRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALK
                     ELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMS
                     LELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQL
                     SPRIMQTLLQQTA"
     gene            complement(1011..>1146)
                     /locus_tag="OQQ75_004316"
     CDS             complement(1011..>1146)
                     /locus_tag="OQQ75_004316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCS1978407.1"
                     /translation="NQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
                     "
BASE COUNT          335 a          190 c          241 g          380 t
ORIGIN      
        1 tgggcggttt gttgtaacaa agtttgcatt attctgggag atagttgatt ttctctaaga
       61 ttgacaacgc tatcagaact gaggccaagt atgctttccg gaattgccgt gatccggttc
      121 tgattaagcc agaatattct tataatatga tcatctcttt ctggaaaatc tggtattact
      181 tccaaagcat ttctggctgc atcaagtaat tccaatgaca ttggtaacct cggaagtaca
      241 gacaggtgat tgtcacttac gttaatatat tctagtgacg caggtaattc aggaagtgcg
      301 aacaaatggt tatcactcac atttatatat tccagcgaca ctggtaattc aggaagtgca
      361 gataattgat tactgcttgc attcagttct ttcaatgccc ttggtagctc ggggagcatt
      421 gatagttggt tattgcttac attaatttca tcaagattgt caggcaatcg tggtagagat
      481 ctgagaccta aacaagataa gtccaacgat gtttcactgt tttccagaca taattggagc
      541 cgggtaaaag cagtttccct gttttctccg gaaatgctgt ttttagtcca ttcaacccat
      601 tcggagagat aattattgtg aacattgtcg attgatgtag ttctgtaaaa agagacgttt
      661 ccagtggata gggggggatt atttacagga agcataataa cctcgcagaa ggatatcctg
      721 ataaaatgtg atactgggaa ataataagct aaaataaaat gtttcaggat tgaaatttat
      781 tgttttcatt ttaaggaagt gatgttgatt taactgtaaa aaaacgatac tattttctta
      841 gatggtaaat gtctcgcctg tgctatattt tgtttttcgg ttagttaaat atcgtacatt
      901 catatttgaa tgttctgccg gaatgcatta tcaatagagg taaagtcgca accccaaatc
      961 gtaaaggaaa ccgtagcacg tcttaagcaa gaacgtgctg cggttggatg ctattttttc
     1021 cctgaagcag aaaacattac tacagtacct tgaaccttgg ttttaacatt ctcgaaatgc
     1081 tctgagagta tatgtgttaa gccttcttcg gaatcttttg tgtttgaaaa gatgcctttc
     1141 tgattg
//
LOCUS       DAJVUP010000331         1137 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.339, whole genome shotgun sequence.
ACCESSION   DAJVUP010000331 DAJVUP010000000
VERSION     DAJVUP010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.339"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..178
                     /locus_tag="OQQ75_004317"
     CDS             <1..178
                     /locus_tag="OQQ75_004317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HCS1978408.1"
                     /translation="ILATTLELVSFCYLSFLIISGAFVTQYIRTKKKLAKVGNSLIGL
                     MFVGFAARLATLQS"
     gene            351..711
                     /gene="yeaR"
                     /locus_tag="OQQ75_004318"
                     /pseudo
     CDS             351..711
                     /gene="yeaR"
                     /locus_tag="OQQ75_004318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310533.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            715..897
                     /locus_tag="OQQ75_004319"
     CDS             715..897
                     /locus_tag="OQQ75_004319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1869 domain-containing protein"
                     /protein_id="HCS1978409.1"
                     /translation="MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVN
                     TVRSYDTENEHDVCGW"
     gene            1045..>1137
                     /locus_tag="OQQ75_004320"
     CDS             1045..>1137
                     /locus_tag="OQQ75_004320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1978410.1"
                     /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFM"
BASE COUNT          301 a          251 c          280 g          305 t
ORIGIN      
        1 tattctggcg acgacgctgg aactggtgag tttctgctat ttgagcttcc tgattatttc
       61 tggtgctttt gtcacgcagt acatacgtac caaaaagaaa ctggctaaag ttggcaactc
      121 actgattggt ttgatgttcg tgggtttcgc cgcccgactg gcgacgctgc aatcctgata
      181 cattcagccc gcgttgtcgc gggcttccca cttgtaatcc tccctgattt ttctctgata
      241 tggtgctaaa aagtaaccaa taaatggtat ttaaaatgca aattatcagg cgtaccctga
      301 aacggctgga ataaaccgtt ttcagcgcat tcaccgaagg agggaaaagg atgctgcaaa
      361 tcccacagaa ttatattcat acgcgctcaa cgcctttctg gaataaacaa actgcgcctg
      421 ccggaataat tcgaacgtca tcttgataaa ggaacgcgcc aggggggtta cccacgcctt
      481 tccgttatgc atggggcggt caaatatctc ggctacgctg atgaacacag tgcagagcct
      541 gatcaggtga tccttatcga agcggggcag tttgcggtgt tccctccaga aaagtggcac
      601 aacattgaag ccatgactga cgatacttat gtcaacattg acttcttcgt ggctcctgaa
      661 gtcctgatgg aaggtgcgca acaacggaaa gtcattcata acgggaaatg aatcatgggc
      721 aaagcaacgt ataccgtgac cgtcaccaat aacagtaatg gcgtttctgt cgattatgaa
      781 acagagacgc cgatgacttt gctggtgcca gaagtggcgg ctgaagtgat aaaagatctg
      841 gtgaataccg tgcgttctta tgacacggaa aacgaacatg atgtttgtgg ttggtaatta
      901 tcactgatcg ttgatggcgc aatttctgcg ccatcgcaaa aaaatcctcc gtgatgctcg
      961 tcacaaatct tgccctcccg atgttgtgct atgcttttta tcagcgacta acccgctaat
     1021 gcaaaacaga taagtgagga aacaatgggc attctgtcat ggattatttt tgggcttatt
     1081 gccggtattc tggcgaagtg gatcatgcca ggtaaagatg gtggtggatt ctttatg
//
LOCUS       DAJVUP010000332         1131 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.340, whole genome shotgun sequence.
ACCESSION   DAJVUP010000332 DAJVUP010000000
VERSION     DAJVUP010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.340"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..483)
                     /locus_tag="OQQ75_004321"
     CDS             complement(1..483)
                     /locus_tag="OQQ75_004321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1978411.1"
                     /translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
                     RTFVICLEDTLRVVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCIQGH
                     GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
                     "
     gene            complement(474..776)
                     /locus_tag="OQQ75_004322"
     CDS             complement(474..776)
                     /locus_tag="OQQ75_004322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1978412.1"
                     /translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
                     DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
BASE COUNT          345 a          280 c          237 g          269 t
ORIGIN      
        1 tcagacttta taaaacaagg tattaggtgc cacaactgac tgaacaaaac caaaacgctc
       61 ataaaatgct ctggcgtcat catcaattgc atgtaccata acagccttaa tgccaacctg
      121 atcagccaga ttgacaaccc ggtgaatggc atcacttagt agccatttac cgaaaccatg
      181 cccctggata caaacatcaa cagccagacg ccctaacaga acaacaggga caggattggg
      241 catgttatgc cgcaaactgc gaccaagctc ggcatgagtg acggaaccag tagctaatga
      301 gtagtatccc acaacacgta aagtatcctc caagcaaata acgaacgtgc gagaagcatt
      361 gagcatctgg tttttcatag cccgaccacg taaccagtta cttagcacct catttccaca
      421 gtcaaatggc tgaagtatat gctcatccgt caacaatgct ggcgcggtga catttatttc
      481 cattcaggct ttaccgccat cagacgttca cgcccttctg cattctgcac aggagcttcc
      541 agttgcgtaa taaacgaatc ataacgttcg ttatccagca caaataaacg ttgatccagg
      601 ataatgtttt tagcttcctg gtacgccagt tccatgatga aatcggtacg gttcttattg
      661 accaagctcg cagcataatc aataacggct cgttcctcat cagttgcccg gatgttaatc
      721 tgatgttctc gcggtgtttt acggacgctt gcagctgtag acataaaaac ctccattggt
      781 aacaatttgc tatgcaatta atgttatcgc aaatggtaac agaacgctat acagaatcac
      841 ttacgggaaa agcgatcccc tgataaaaac aatggcagag acctgaacat tgtgacgatg
      901 atctgtgtcg gcgcacaaat catgtctgat tacggccgtt taatgtgatt ttgataatga
      961 aatgcctgaa ccacggcagc ctggcggctg caaatcgggg tgtggcagaa tatgagcttt
     1021 cagagtaacc atccagaatg agttcccatg tcacacaacc tggagcacca gaaagtccac
     1081 accagaatgg tgaaagaggt tctgaaagcc gtcgccagag ccaataatca c
//
LOCUS       DAJVUP010000333         1097 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.341, whole genome shotgun sequence.
ACCESSION   DAJVUP010000333 DAJVUP010000000
VERSION     DAJVUP010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.341"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(199..465)
                     /locus_tag="OQQ75_004323"
     CDS             complement(199..465)
                     /locus_tag="OQQ75_004323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978413.1"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPATNRTKTLKFTATEMQWLTKINEVGIVEKQSQRHSNI"
     gene            complement(647..1045)
                     /locus_tag="OQQ75_004324"
                     /pseudo
     CDS             complement(647..1045)
                     /locus_tag="OQQ75_004324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612066.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          283 a          224 c          227 g          363 t
ORIGIN      
        1 gcgtccctgc actcgaataa tggtgaagaa agcatgatga atatatcacg ataacgttca
       61 gtatgtatcg aggatagatg gagttactcc tctctgaaat agaattactg ctctactttt
      121 tctgtttcca gaaattatta gtaacaaacc ctgatatatt cttttgaaaa tggagcttaa
      181 acgagtctga aattaacttc agatattaga atgccgttgg ctttgttttt caacaattcc
      241 tacttcattt atctttgtca accattgcat ttctgtagca gtgaatttca acgttttcgt
      301 ccggttggta gcaggtattt gtaattcgta tatagctgct tttttattga aaacagtata
      361 tccatctgta gtaacagtag aagataataa tacaggattt gacacttcaa ggatgatatt
      421 ttcttgtttt tgtggaaggc aagggaatat agtttgtgta agcatattgc ttccttatgt
      481 tatattttag taaagaattt attttttaca ttatagtcgg ctaaatgaag tttactgtaa
      541 aaaaacgata cttttttcgt aagcgatgag atgtggagcc agaaaaatgg ctgcgttacg
      601 tcattgaact gtccttgacc cacgatattc agacagtcgt tgtatcttaa gttgacatta
      661 cccgctgacg tcgatattcc cttggtgaga gataacccaa cgcactatgc ggatggtttt
      721 cattgtaatg ctcgatcgcc actgcaaggt tatgcaatgc cattcttggt ttcggcatga
      781 acgcgatgca gtcttccttc atcgttttca cgaaccgttc tgctattcca ttactctgag
      841 ggctactgac tgccgtcgtg cagggctcca gattcaactc tctggcgaac tgccgtgttt
      901 catgagccgt ataagccgaa ccgttatcgg ccactggatt ggccgttccg gtcctttatc
      961 gccatatcgc tgacatgaca tcctgcaccg ttgctttgtc ataatctccc gtgcctgctg
     1021 cccagtctat ggcttcacga tcgcaatatg gaacgtaacg ctgtcatcgg gagaatcgtc
     1081 aatgcggcat tcggtta
//
LOCUS       DAJVUP010000334         1096 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.342, whole genome shotgun sequence.
ACCESSION   DAJVUP010000334 DAJVUP010000000
VERSION     DAJVUP010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.342"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            76..995
                     /locus_tag="OQQ75_004325"
                     /pseudo
     CDS             76..995
                     /locus_tag="OQQ75_004325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415843.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            995..>1096
                     /locus_tag="OQQ75_004326"
     CDS             995..>1096
                     /locus_tag="OQQ75_004326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000680621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1978414.1"
                     /translation="MKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAI"
BASE COUNT          321 a          252 c          256 g          267 t
ORIGIN      
        1 aatcaactta atgatcaata tctatagtga tatcaccaac cgttaaaacg aaccgacaac
       61 tccatgagga acggaatgat gaataataaa gtcagcttca ctaacagcaa taatccaacc
      121 atctctttgt ctgcagtgat ctatttccct ccaaaatttg atgaaacccg tcagtatcag
      181 gcaattgtgg tatctcaccc aggtggggcg ttaaagaaca aacggccgga acctatgcca
      241 aaaaactggc ggaaaaggga tttgtcacta ttgcttatga cgcatcttat caaggtgaaa
      301 gtggcggcga gccgcgtcag ttagaaaacc catacattcg tactgaagac atcagtgccg
      361 tgattgatta cctgacaacg ctttcttatg tcgacaatac ccgaattggt gcgatgggaa
      421 tttgtgccgg tgcaggatat acagccaatg ctgcaattca ggatcgccgc atcaaggcca
      481 tcggtaccgt tagtgcggtc aatattggtt cgatgttccg taatggttgg gaaaacaatg
      541 tgaaatctat tgatgccctg ccatacgttg aagcgggttc aaacgcccga accagcgata
      601 ttagcagcgg agaatatgcc gttatgccac tggcaccaat gaaggagtcc gatgcgccga
      661 acgaagaact gcgtcaggcc tgggagtatt accacacccc tcgcgcgcag tatccaacag
      721 caccgggtta cgctactttg cgcagcctta accagattat tacctttgat gcttaccata
      781 tggcggaagt gtacctgact cagccgatgc agattgtggc gggcagccag gcagggagca
      841 aatggatgag tgacgatctg tacgatcgag catcaagcca agataaacgc tatcacattg
      901 ttgaaggcgc aaaccatatg gatctttatg acggcaaagc ctatgtggct gaagcaattt
      961 cagtattagc tccgttcttt gaggaaactc tgtaatgaaa catattcaaa tccgcaatag
     1021 tgatatggcc tggcatattg ctgccaatat tcagtttcca ccaaattttg atgagtcaaa
     1081 acagtatccg gcgatt
//
LOCUS       DAJVUP010000335         1090 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.343, whole genome shotgun sequence.
ACCESSION   DAJVUP010000335 DAJVUP010000000
VERSION     DAJVUP010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.343"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>1090
                     /gene="pdeF"
                     /locus_tag="OQQ75_004327"
     CDS             <1..>1090
                     /gene="pdeF"
                     /locus_tag="OQQ75_004327"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeF"
                     /protein_id="HCS1978415.1"
                     /translation="FIIIIIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPA
                     TLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVR
                     NPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSL
                     LLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSF
                     IVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLRIPGME
                     MLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDS
                     HLKQFRFFWDGMPMQPQIGVSYCYVRSPV"
BASE COUNT          243 a          255 c          252 g          340 t
ORIGIN      
        1 tttattatca ttatcattat cattctctgt tggggcggtt acagggtctt tactccccgg
       61 cgtaacaacg tttcacatgg tgatacccgt ttaatttccc agcgtatatt ctggcagatt
      121 gtgtttcctg caacgctgtt tctgatactt ttccagtttg ctgcatttgt aggattattg
      181 gcgagcagag aaaatctggt cggtgtcatg ccttttaacc tcgggacttt aatcaattat
      241 caggccttac tggtgggtaa tctgatcggt gtcccgctgt gctacttcat cattcgggta
      301 gtgcgaaatc cattttattt acgtagctat tattcgcaat taaaacagca ggttgatgcc
      361 aaagtcacca aaaaagagtt cgcgctctgg ctactggcat taggtgcttt attgttgctg
      421 ttatgcatgc cgttaaatga aaaaagcaca atttttagca ccaattatac cttgtcatta
      481 ttgctgcccc tgatgatgtg gggagcgatg cgctatggtt ataagctgat ttctctgctc
      541 tgggcggtcg tgttgatgat cagcatccac agctatcaaa attacattcc catttatcct
      601 ggctatacca cgcagctgac cataacctcc tccagttatc tggtattctc ttttattgtc
      661 aattatatgg ctgtactggc aacccgtcag agagcggtag tcagacgcat tcagcggctt
      721 gcgtatgtgg acccggtggt tcatctgcca aatgttcgcg ccctgaatcg cgcgttgcgt
      781 gatgccccct ggtctgcgct ttgttattta cgcatccctg gcatggaaat gctggttaag
      841 aactatggca tcatgctgcg gattcaatac aagcaaaaac tttctcactg gctgtcaccc
      901 ttgctggaac cgggtgaaga tgtttatcag ctttcgggta acgatctcgc gctgcgactg
      961 aatacagaat cgcaccagga gcgcattacc gcactggata gccatctcaa gcaatttcgt
     1021 ttcttttggg atggcatgcc gatgcaaccg cagattggcg tcagttactg ctatgtgcgc
     1081 tcgccagtga
//
LOCUS       DAJVUP010000336         1083 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.344, whole genome shotgun sequence.
ACCESSION   DAJVUP010000336 DAJVUP010000000
VERSION     DAJVUP010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1083
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.344"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..588
                     /locus_tag="OQQ75_004328"
     CDS             <1..588
                     /locus_tag="OQQ75_004328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978416.1"
                     /translation="TITSGGNPPAFSLTPDGRLTAKNADISGNVNANSGTLNNVTINE
                     NCRVLGKLSANQIEGDLVKTVGKAFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPA
                     VAFSGAKHEREHTDIYSSCRLIVRKNGAEIYNRTALDNTLIYSGVIDMPAGHGHMTLE
                     FSVSAWLVNNWYPTASISDLLVVVMKKATTGITIS"
     gene            656..>1083
                     /locus_tag="OQQ75_004329"
     CDS             656..>1083
                     /locus_tag="OQQ75_004329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1978417.1"
                     /translation="MRKLCAVILSAVVWLVAAGMPASAAEHQSTLSAGYLQTHTDMPG
                     SDDLNGINVKYRYEFTDTLGLVTSFSYANAKDEQKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVTYSRVSTFSGDYLRVTDSKGKTH"
BASE COUNT          270 a          252 c          305 g          256 t
ORIGIN      
        1 accattacca gcggcggtaa tcctccggca ttttccctga caccggacgg gcggctgacg
       61 gcgaaaaatg ccgatattag cggtaacgtg aatgcgaact ccgggacgct caacaacgtc
      121 acgattaacg agaactgtcg ggttctggga aaactgtccg ccaaccagat tgaaggcgat
      181 ctcgttaaaa cagtgggcaa agctttcccc cgggactccc gtgcaccgga gcggtggcca
      241 tcagggacca ttaccgtcag ggtttatgac gatcagccgt ttgaccggca aattgttatt
      301 ccggcggtgg cattcagtgg cgctaagcat gagagagagc atactgatat ttactcctca
      361 tgccgtctga tagtgcggaa aaacggtgct gaaatttata accgtaccgc gctggataat
      421 acgctgattt acagtggcgt tattgatatg cctgccggtc acggtcacat gacactggag
      481 ttttcggtgt cagcatggct ggtaaataac tggtatccca cagcaagtat cagcgatttg
      541 ctggttgtgg tgatgaagaa agccactaca ggcatcacga ttagctgaat tttataaccc
      601 agatacgggc accagaaatg gtgccttttt tattgcagaa aagcgagagg taattatgcg
      661 taaattatgt gctgttattc tgtccgcagt agtctggctg gttgccgctg gtatgccagc
      721 gagcgcagca gagcatcagt ccacactaag cgccgggtat cttcagaccc atactgatat
      781 gccaggcagc gatgatctga acgggattaa cgtgaaatac cgttatgagt ttacggacac
      841 gctggggctg gtgacgtcat tcagttatgc caatgccaaa gatgagcaaa aaacgcatta
      901 cagcgatacc cgctggcatg aagattccgt gcgtaaccgc tggttcagcg tgatggcggg
      961 gccgtctgtg cgcgtgaatg aatggttcag cgcgtatgcg atggcgggtg tgacttacag
     1021 tcgtgtgtcg actttttccg gggattatct ccgtgtaact gacagcaagg ggaaaacgca
     1081 cga
//
LOCUS       DAJVUP010000337         1057 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.345, whole genome shotgun sequence.
ACCESSION   DAJVUP010000337 DAJVUP010000000
VERSION     DAJVUP010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.345"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
BASE COUNT          326 a          181 c          202 g          348 t
ORIGIN      
        1 tcgggagtaa aaaacatggt atctttccgt atgtcagttg tatcttgctg gtattcgtag
       61 tcgtgataag gcatacaacg atatttatct tcacgttagt gaagaataag ttgttttgtg
      121 atctatgtta atctgggatt acaatccggg cttgatacat cgcatcacga cttttattct
      181 cttcagaata gaatatgtta ctccccgttt tacaggctca ggatttgaat tacaaattat
      241 acttttaagt gaacaataac taggggtatt tcttatttcc tgaaaccagg cttggcccat
      301 ttcgggatga gtttgaaaaa actcctgacg catacgatag tgatgaaata aacgaaacaa
      361 attacgtcaa caaactcagg cgtcttgcct gacatgctcc tgacatcatt gatattcacg
      421 ctcatctggc atatgcattt gcgctcttta tgctgcaatt ctggcgaatg ttcatttaca
      481 gcgtcatcag gatgccgtta tactcattga taaaatacta acatataacc ctgagaataa
      541 tcaggggaca cgctggttac tggggacgga attgttacgt gctggcaagc atgacagggc
      601 tctgtacgta ttgacaggac atgtcaatga atttcccccc tactggtacg agcttgctct
      661 tttacatttt atgaatgagg catatattaa tgctgcaacg gcatttcgat atggattttt
      721 aacaagcata tattgttgaa atgctttgtt agaatcttta tccattccct ggggctgtat
      781 agtatgattt ttcaggtatt tctgaataca gccaaatatt attgcaaaat attctctaaa
      841 ttattagtta aatatccata agcattattg cctgggaact ggacatataa ttactcttct
      901 gtgctaaagg aacgttctga aatgtttaag tatgcagaga tgttgatggc ggaagaagat
      961 aataaagtat gtgaacttat ttttaaacaa caagataatt tgattttaaa aataaatgat
     1021 agatttccca gaataattat aaagaaatac cgaacat
//
LOCUS       DAJVUP010000338         1057 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.346, whole genome shotgun sequence.
ACCESSION   DAJVUP010000338 DAJVUP010000000
VERSION     DAJVUP010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.346"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..1057
                     /gene="treA"
                     /locus_tag="OQQ75_004330"
                     /pseudo
     CDS             1..1057
                     /gene="treA"
                     /locus_tag="OQQ75_004330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415715.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
BASE COUNT          284 a          278 c          265 g          230 t
ORIGIN      
        1 tttttgtgtt tcgctgcgct atcggtgcag gcagaagaaa caccggtaac accacagccg
       61 cctgatattt tattagggcc gctgtttaat gatgtgcaaa acgccaaact ttttccggac
      121 caaaaaacct ttgccgatgc cgtgccgaac agcgatccgc tgattatcgg atgcagcaaa
      181 accagagcgg atttgatctg cgccatttcg ttaacgtcaa tttcaccctg ccgaaagaag
      241 gcgagaaata tgttccgcca gaggggcagt cactgcgcga acatattgac ggactttggc
      301 cggtattaac gcgttctacc gaaaacaccg aaaaatggga ttctctgtta ccgctgccgg
      361 aaccttatgt cgtgccgggc ggacgttttc gcgaggtata ttactgggac agttacttca
      421 ccatgttagg acttgccgaa agcggtcact gggataaagt cgcggatatg gtggccaatt
      481 ttgctcatga aatagacact tacggtcata ttcccaacgg caaccgcagt tactatttaa
      541 gccgctcgca accgcccttc tttgccctga tggtagagtt actggcgcag catgaaggcg
      601 atgccgcgtt gaagcaatac ctgccgcaaa tgcaaaaaga atatgcttac tggatggacg
      661 gtgttgaaaa cctgcaagcc ggacaacagg aaaaacgcgt tgtcaaactt caggatggta
      721 cccttctcaa ccgctactgg gacgatcgcg atacgccacg accagagtca tgggtggaag
      781 atattgccac cgccaaaagc aatccgaatc gacctgccac tgaaatttac cgcgacctgc
      841 gctctgccgc tgcgtctggc tgggatttca gctcgcgctg gatggacaac ccgcagcagt
      901 taaatacctt acgcaccacc agcatcgtac cggtcgatct gaacagcctg atgtttaaaa
      961 tggaaaaaat cctcgcccgc gccagcaaag ctgcaggaga taacgcgatg gcaaaccagt
     1021 acgaaacgct ggcgaatgcc cgtcaaaaag gaatcga
//
LOCUS       DAJVUP010000339         1056 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.347, whole genome shotgun sequence.
ACCESSION   DAJVUP010000339 DAJVUP010000000
VERSION     DAJVUP010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.347"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..1033
                     /locus_tag="OQQ75_004331"
     rRNA            <1..1033
                     /locus_tag="OQQ75_004331"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          261 a          247 c          330 g          218 t
ORIGIN      
        1 actccgtgcc agcagccgcg gtaatacgga gggtgcaagc gttaatcgga attactgggc
       61 gtaaagcgca cgcaggcggt ttgttaagtc agatgtgaaa tccccgggct caacctggga
      121 actgcatctg atactggcaa gcttgagtct cgtagagggg ggtagaattc caggtgtagc
      181 ggtgaaatgc gtagagatct ggaggaatac cggtggcgaa ggcggccccc tggacgaaga
      241 ctgacgctca ggtgcgaaag cgtggggagc aaacaggatt agataccctg gtagtccacg
      301 ccgtaaacga tgtcgacttg gaggttgtgc ccttgaggcg tggcttccgg agctaacgcg
      361 ttaagtcgac cgcctgggga gtacggccgc aaggttaaaa ctcaaatgaa ttgacggggg
      421 cccgcacaag cggtggagca tgtggtttaa ttcgatgcaa cgcgaagaac cttacctggt
      481 cttgacatcc acggaagttt tcagagatga gaatgtgcct tcgggaaccg tgagacaggt
      541 gctgcatggc tgtcgtcagc tcgtgttgtg aaatgttggg ttaagtcccg caacgagcgc
      601 aacccttatc ctttgttgcc agcggtccgg ccgggaactc aaaggagact gccagtgata
      661 aactggagga aggtggggac gacgtcaagt catcatggcc cttacgacca gggctacaca
      721 cgtgctacaa tggcgcatac aaagagaagc gacctcgcga gagcaagcgg acctcataaa
      781 gtgcgtcgta gtccggattg gagtctgcaa ctcgactcca tgaagtcgga atcgctagta
      841 atcgtggatc agaatgccac ggtgaatacg ttcccgggcc ttgtacacac cgcccgtcac
      901 accatgggag tgggttgcaa aagaagtagg tagcttaacc ttcgggaggg cgcttaccac
      961 tttgtgattc atgactgggg tgaagtcgta acaaggtaac cgtaggggaa cctgcggttg
     1021 gatcacctcc ttaccttaaa gaagcgtact ttgcag
//
LOCUS       DAJVUP010000340         1056 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.348, whole genome shotgun sequence.
ACCESSION   DAJVUP010000340 DAJVUP010000000
VERSION     DAJVUP010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.348"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..744
                     /locus_tag="OQQ75_004332"
     CDS             <1..744
                     /locus_tag="OQQ75_004332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS domain-containing protein"
                     /protein_id="HCS1978418.1"
                     /translation="YTPARKIHLYHCDHRGLPLALISTEGATEWCAEYDEWGNLLNEE
                     NPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNP
                     ISEIDPQGLNPLILGVVALMSCGLFSSGGVIQSGQQRRDQYGRKVNPEADKLTDEHKS
                     GVNPGGNCSPQNLSDLQNEKNRLCNQSRACAPQMLRKEILRRYEINLACASVRKQINN
                     QCFGGGDKAHMEEENKAYKTAADCSGLIK"
     gene            741..>1056
                     /locus_tag="OQQ75_004333"
     CDS             741..>1056
                     /locus_tag="OQQ75_004333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000720080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978419.1"
                     /translation="MKKIIFSNESAVYDELMIHFPCQPLPHISNDIIGLDELDVVYNF
                     FQKKQWNEIANNLKIKDDSYALELGITFLPEKVFCYYIPLYIYVSLFNKNDFWVFESD
                     FIQ"
BASE COUNT          329 a          200 c          247 g          280 t
ORIGIN      
        1 tacacgccgg cgcgaaaaat ccacctgtac cactgcgacc atcgcggcct gccgctggcg
       61 cttatcagca cggaaggggc aacagaatgg tgcgcagaat acgatgagtg gggcaacctg
      121 ctgaatgaag agaacccgca ccagctgcag cagcttatcc gtttgccggg gcagcagtat
      181 gatgaggagt ccggcctgta ttacaaccgc caccgctatt atgacccgct gcaggggcga
      241 tatatcactc aggacccaat tgggctgaag gggggatgga atttttatca gtatccgttg
      301 aatccgatct cagagataga cccacaaggg ttaaatccgt taattcttgg tgttgtagca
      361 ctgatgagtt gcggtttgtt ttcatcaggt ggtgttatcc aaagtgggca acaacgcaga
      421 gatcaatatg gacgtaaagt taatccagaa gccgacaaat taacagatga acataagtca
      481 ggtgtaaatc ctggaggtaa ctgtagtccc cagaacctga gtgacttaca aaatgaaaaa
      541 aacagattat gtaaccagtc tagagcttgc gctcctcaga tgctgagaaa agaaatattg
      601 agacggtacg agataaattt ggcgtgcgct tcggtcagaa agcagattaa taatcagtgc
      661 tttggtggtg gagataaggc ccatatggaa gaagagaata aagcatataa aacagcagct
      721 gattgcagtg gcttaataaa atgaaaaaaa taattttctc taacgagagt gcagtctatg
      781 atgaacttat gattcatttt ccatgccagc cattacctca tatttcaaat gatattatag
      841 ggctggatga actggatgtt gtatataatt ttttccaaaa gaaacaatgg aatgaaatag
      901 ccaataattt aaaaataaag gatgactctt atgctttaga gttaggaatt acattcctcc
      961 ctgagaaagt attctgctat tacatccctc tgtatattta tgtctcgttg tttaataaga
     1021 atgatttttg ggtttttgaa tccgatttta ttcaac
//
LOCUS       DAJVUP010000341         1054 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.349, whole genome shotgun sequence.
ACCESSION   DAJVUP010000341 DAJVUP010000000
VERSION     DAJVUP010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.349"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>1054
                     /locus_tag="OQQ75_004334"
     CDS             <1..>1054
                     /locus_tag="OQQ75_004334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1978420.1"
                     /translation="VKKEHADGSVTQSQFDAVGRLRTQTDAAGRTTEYSPDVVTGLIT
                     RITTPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDIIRYRYDN
                     PHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLS
                     QYRAYDSRGQLIAVKDTQGHETRYEYNAAGDLTAVIAPDGSRNGTQYDAWGKAIRTTQ
                     GELTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLI
                     RSEDEGLVTHWHYDEADRLTHRTVNGETAEQWQYDKRGWLTDISHLSEGHRVTVHYRY
                     DEKGRLTGERQTVHHPQ"
BASE COUNT          265 a          306 c          321 g          162 t
ORIGIN      
        1 ggtgaaaaag gaacacgcgg acggcagcgt cacgcagagt cagtttgacg ccgtgggcag
       61 gctcaggaca cagacggatg ccgcaggccg gacaacagaa tacagcccgg atgtggtgac
      121 gggcctcatc acgcgcatca ccacgccgga tggcagggca tcggcgtttt actataacca
      181 ccacagccag ttaacgtcag ccaccgggcc tgacgggctg gaaatacgcc gggaatatga
      241 tgaatggggc cgtctgattc aggaaactgc ccctgacggc gatatcatcc gctaccgtta
      301 tgataatcca cacagtgact taccctgcgc aacggaagat gccaccggta gccggaaaac
      361 catgacgtgg agccgttacg gtcagttgct gagcttcacc gactgttccg gttatgtaac
      421 ccgttatgac catgaccgct tcgggcagat gacggcggtg caccgcgagg aagggctgag
      481 tcagtaccgc gcatacgaca gccgtggaca gttaattgcc gtgaaagaca cgcagggcca
      541 tgaaacgcgg tatgaataca acgccgccgg tgacctgacc gccgtcattg ccccggacgg
      601 cagcagaaac gggacacagt acgatgcgtg gggaaaggcc atccgtacca cgcagggcga
      661 gctgacgcgc agtatggaat acgatgctgc aggacgggtc atccgcctga ccagtgaaaa
      721 cggcagccac accaccttcc gttacgatgt actcgaccgg ctgatacagg aaaccggctt
      781 tgacggccgc acacagcgtt atcaccacga cctgaccggc aaacttatcc gcagcgagga
      841 tgaggggctg gtcacccact ggcactatga cgaagcagac cgcctcacgc accgcaccgt
      901 gaatggcgaa accgcagagc agtggcagta tgacaaacgt ggctggctga cagacatcag
      961 ccatctcagc gaagggcacc gggtgacggt gcattacagg tatgatgaga aaggccggct
     1021 gaccggtgag cgccagacgg tgcatcaccc gcag
//
LOCUS       DAJVUP010000342         1048 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.350, whole genome shotgun sequence.
ACCESSION   DAJVUP010000342 DAJVUP010000000
VERSION     DAJVUP010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.350"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            122..562
                     /locus_tag="OQQ75_004335"
     CDS             122..562
                     /locus_tag="OQQ75_004335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978421.1"
                     /translation="MIQKINILDSSQSGVKNGADSEAVLAALIEHLELINPSGRLSQN
                     TRSAMLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALY
                     RQRRCKSPGDDSETLTRRNDAIFGNHVWQTFAQYFPPGLEKPAV"
     gene            complement(641..1048)
                     /locus_tag="OQQ75_004336"
                     /pseudo
     CDS             complement(641..1048)
                     /locus_tag="OQQ75_004336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415715.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
BASE COUNT          256 a          233 c          258 g          301 t
ORIGIN      
        1 gtatattcga cacctgcttt acgggtgaaa aaaatcaata tagcacttcg atatccgata
       61 aagtcggttc ccggtaacaa caacagaatc cttttttaat tattgtttcg ttgtttttgg
      121 tgtgattcag aaaataaata ttttagacag tagccagtca ggcgttaaaa atggggcgga
      181 tagtgaggcg gttttggctg cgcttattga acatttagaa ttgatcaatc cttctggcag
      241 attaagccaa aatacccgtt cggcaatgct tcagttacgc gaagaggaat ggtctgaatt
      301 ctttttttgg ttgctaaatt ctctggagtg tctggattat gtgattatta atttaactcc
      361 agaaagcaaa aaaacgttga tgagtgaaca ccgtaacaat attcaggtag caatcgatgc
      421 tttatatagg caacgtcggt gtaaatcacc gggggatgat agtgaaacac ttacccgtag
      481 aaatgacgct atcttcggca accacgtatg gcaaacattt gcgcaatact tcccgccagg
      541 acttgaaaaa ccggctgtgt agaaaacacc atagctatgg tgttatctgc cgacaacgcc
      601 atccggagaa gccgaatgac gttgtcggag taagcgctgg ttaaggtgtg ggttgtgcct
      661 ctttggttga gggttgcgtc gttgctgact taacggtcgg acgcgtcgcc ggaacattgt
      721 cacacggttg ctctttcggg cagatcaaat ccagcatttt cagcgtcacg ccattggtcc
      781 agccaaagcc atcctgtaat ggatattcgc cacctctttt tgcccgtagt tttgtaatcc
      841 ttctgtcgcg acccactgta acggtgccca gccatttggc gcatcccatt gttgcccact
      901 tttcaccgac gtggtgttca ggccgccggg ttgcagcaga tgtgttttcg tcgccgtcgc
      961 cattttgttg gcgcgatctt tcgctgccgc attgacgtac agcgggaaca gggcggccgc
     1021 ggttaactga ttgcgcactt tatgactt
//
LOCUS       DAJVUP010000343         1041 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.351, whole genome shotgun sequence.
ACCESSION   DAJVUP010000343 DAJVUP010000000
VERSION     DAJVUP010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.351"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            114..845
                     /gene="bluR"
                     /locus_tag="OQQ75_004337"
     CDS             114..845
                     /gene="bluR"
                     /locus_tag="OQQ75_004337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor BluR"
                     /protein_id="HCS1978422.1"
                     /translation="MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDE
                     EDIQRIEEIKRWISNGVPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRA
                     RIISLGREYPVDQLINHVYLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRK
                     PGKEAILMAWNVEERARLWLEAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGM
                     APTRRQNELLQHWGEQGYKVIFHAP"
BASE COUNT          289 a          245 c          244 g          263 t
ORIGIN      
        1 catccaattt agctgaaatc ttatttatac tttgtacaat tttagcgtat attgtacaaa
       61 gtattattgg gtcgtgtaca ggcgacggag atttgtgacc gcaaggagga attgtggctt
      121 attacagcat tggtgatgtt gctgaacgtt gcgggattaa tcctgtcact ctccgggcct
      181 ggcaacgccg ctacggtttg ttaaaaccac agcgcagtga aggcggacac cgactctttg
      241 atgaagaaga catacaacgc atcgaagaga tcaagcgttg gataagtaat ggcgtccctg
      301 taggcaaagt taaagcatta ctggaaacca ccagccagga tacggaagat gactggagcc
      361 gcctgcaaga agagatgatg tcaattcttc gcatggctaa tcctgccaaa ctacgcgcga
      421 gaattatttc actgggtcga gagtacccag tagatcaatt gattaatcat gtttaccttc
      481 ctgttcgcca gcgtctcgtg cttgatcaca acacctcccg cattatgagc agtatgtttg
      541 acggcgcatt aattgaatac gcagcaacct cgcttttcga aatgcgccgt aagcccggta
      601 aagaagccat tctgatggcg tggaatgttg aagagagagc acgattgtgg ctggaagcat
      661 ggcgtttatc attgtcagga tggcacattt ctgttcttgc tgatcccatt gaatcgccgc
      721 gcccggaact gttcccgacg caaacattga ttgtctggac aggcatggca ccaacgagaa
      781 ggcaaaacga acttttacaa cactggggtg agcaaggtta taaagtcatc tttcatgccc
      841 cctaatttca cctttatccc gccccttaga cagaatgtta taatctgaac ccacaacagc
      901 atttgtaccg gagctgatcc gttgcaaaat gctcaccggg agaattcagg taatccctct
      961 atcacactct gtacatatca cagccaaagg acagaccaga ttgaagtggt aaaaccgatc
     1021 gtgcacacta cgcagtctca c
//
LOCUS       DAJVUP010000344          964 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.352, whole genome shotgun sequence.
ACCESSION   DAJVUP010000344 DAJVUP010000000
VERSION     DAJVUP010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.352"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..180
                     /locus_tag="OQQ75_004338"
     CDS             <1..180
                     /locus_tag="OQQ75_004338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS1978423.1"
                     /translation="SKALLLIAKQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVK
                     VNPDVLMLARKKNDG"
     gene            170..>964
                     /gene="dgcN"
                     /locus_tag="OQQ75_004339"
     CDS             170..>964
                     /gene="dgcN"
                     /locus_tag="OQQ75_004339"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcN"
                     /protein_id="HCS1978424.1"
                     /translation="MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLT
                     LKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNIL
                     ASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSL
                     AVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFH
                     RFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRS"
BASE COUNT          252 a          254 c          216 g          242 t
ORIGIN      
        1 tcaaaggcgt tattattaat tgccaaacaa aataccgagt gcattattgg tagcgccttt
       61 tgtctgatca tccacaataa tgacgtcaga tttgccgtaa acctggatgc cttatcgcgt
      121 agcggtgtaa aggtcaaccc ggatgtctta atgctcgcac ggaagaaaaa tgatggataa
      181 cgataattct cttaataagc gccccacgtt taaaagagca ttacgcaaca tcagtatgac
      241 cagcatattt atcactatga tgctgatctg gttgctgctt tccgtgacct cggtgctgac
      301 cctgaaacag tacgcgcaaa aaaacctggc actgacagca gcaacaatga cttacagtct
      361 ggaagcagct gtcgtttttg ccgatggccc tgcagcaact gaaacactgg cagcgctggg
      421 ccagcaaggg caattttcaa ctgcagaagt acgtgataag cagcaaaata ttctggcgtc
      481 ctggcattac acccgtaagg atccaggcga tactttcagc aatttcataa gccactggct
      541 cttccccgcc cccatcattc agccgattcg tcacaatggt gaaaccattg gcgaagtacg
      601 cttaaccgct cgcgacagtt caatcagcca ttttatctgg ttttcgctcg ccgtactgac
      661 cggttgtatt ctgctggcat caggcatcgc aattaccctc acccgccatt tgcacaatgg
      721 cctagtggaa gcgctgaaaa atatcaccga tgtcgtacat gatgtgcgtt ccaaccgcaa
      781 tttttcccga cgagtttctg aagaacgtat cgctgagttt caccgcttcg ctctcgactt
      841 caacagtctg ctggatgaaa tggaagagtg gcagcttcgt ttacaggcca aaaatgcgca
      901 gcttctgcgt accgcgctac atgacccatt aaccgggctg gctaaccgcg cagcgtttcg
      961 tagc
//
LOCUS       DAJVUP010000345          954 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.353, whole genome shotgun sequence.
ACCESSION   DAJVUP010000345 DAJVUP010000000
VERSION     DAJVUP010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.353"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..211
                     /locus_tag="OQQ75_004340"
                     /pseudo
     CDS             1..211
                     /locus_tag="OQQ75_004340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000937495.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
     gene            326..496
                     /locus_tag="OQQ75_004341"
     CDS             326..496
                     /locus_tag="OQQ75_004341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001710241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978425.1"
                     /translation="MVRLPPVVMSAKSATARTTIAREDAEDHQVKLSAQKLEELLASM
                     VKDEVDRNDGIY"
     gene            801..926
                     /locus_tag="OQQ75_004342"
                     /pseudo
     CDS             801..926
                     /locus_tag="OQQ75_004342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415772.1"
                     /note="receptor for colicin S4; incomplete; partial in the
                     middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
BASE COUNT          287 a          194 c          225 g          248 t
ORIGIN      
        1 cgaatggctg gaagaccgtc accacacagt tctacatcca ggaattcagt gagtatattg
       61 cgccactgca ggatgctgta gatctggaaa tcgcaacgga ggaagaaaga tcgttgctgg
      121 aggcatggaa taaatatcgg gtattgttga atcgtgttga tacatcaact gcaccgatat
      181 tgagtggcct gcaaatcctg tcagggagta atcattggga ttatgccgca gacacgtcgt
      241 atgcaggaac gtgctgcggt tagtttgtaa gctttcgata gtggttgtta tttttgccct
      301 tatttgttcc ggaggccatg gttcaatggt ccgtctgccc cctgtggtga tgtcagcaaa
      361 atcagccact gcgcgaacca caatagcccg ggaagatgct gaagatcacc aggtaaagct
      421 gtcagcgcag aaactggaag aactgctcgc atcaatggtt aaggatgagg ttgatcgcaa
      481 tgatgggatt tattgacgtc agcgagagca gaaggaagaa ctgaataacc tgaatgattt
      541 acgctcaatc agagcgatga tgattggcag taattagcgg tcaatttcgg tttttttggc
      601 tgtgcgctcc ccgcccagca ttgcgcgtca attagccccc aaaaaaacga aaaagttaca
      661 atcaagtaaa aaattccttc tgcaaaacta aaaaagattt caataaaatc agacagttaa
      721 aaacataaaa aaaggtacaa aaaaaacatc tcaaagtctt gttttttgct tcaaatacaa
      781 ttggttattg tgttttttga aacctaccag tctggtacat ggatatcgat accaccgcca
      841 attataagct gggcggtgca cagcaacatg atagcgtacg cctcgatccg tgggtgttta
      901 tgttctcagc aggatatcgt ttttaattcc gcacaaaaac gaccccgtaa tata
//
LOCUS       DAJVUP010000346          953 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.354, whole genome shotgun sequence.
ACCESSION   DAJVUP010000346 DAJVUP010000000
VERSION     DAJVUP010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.354"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..534
                     /locus_tag="OQQ75_004343"
                     /pseudo
     CDS             1..534
                     /locus_tag="OQQ75_004343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          280 a          215 c          204 g          254 t
ORIGIN      
        1 cagttgtcca ggccttccga aatcaaccga ctgaaggcgc tggtcgcgaa actgcagcgt
       61 atgcagttcg gtaaaagctc agaaaaactt cgcgcaaaaa ccgaacggcg gatacaggaa
      121 gcacaggagc gagtcagcgc acttcaggag gaaatggcgg aaacactggg tgagcaatat
      181 gacccggtac tgccatcttc cctgcgccag tcttcagccc gtaaaccgtt accagcctca
      241 cttccccgtg ccccccgggt catccggccg gaagaggaat gctgtccggc ctgtggtggt
      301 gaactcagtc cactgggatg tgatgtgtca gagcagctgg agcttatcag cagcgccttt
      361 aaggttatcg aaaaacaacg ccctaaactg gcctgtcgcc ggtgcgacca tatcgtgcag
      421 gcaccggtgc cttcaaaacc cattgcacgc agttatgccg gagcggggct tctggcccat
      481 gttgttaccg gaaagtatgc agaccatctg ccattatacc gccaaagtga tctactattc
      541 cacacagcta tttagctctc tttttgttga gctcccatga ttctttcatt tattgttact
      601 aattatttta tgttatcatg atgttagaac acgctctgct ctgtgtctct attttatcta
      661 tcatattctg aggattaact acataacaag gcgcaagata tatatccaaa aacaaataat
      721 accgttgcaa taattccttt cagtaaagga ggtgtgatta atttcagggg atttcagagt
      781 gaaaattgta caacatattg aaatatgttc atttcgttat aatacacaca agaaaatatt
      841 aagttagata atatattcta aataaccata gataaaaatg cacataatgg ggaatatttt
      901 atgaaaatac ctgaagcagt aaatcatatt aatgttcaga ataatattga tct
//
LOCUS       DAJVUP010000347          947 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.355, whole genome shotgun sequence.
ACCESSION   DAJVUP010000347 DAJVUP010000000
VERSION     DAJVUP010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.355"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>947
                     /locus_tag="OQQ75_004344"
     CDS             <1..>947
                     /locus_tag="OQQ75_004344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978426.1"
                     /translation="LMQAIAAEGAVISATSDPEYYFVVVLAGQSNGMSYGEGLPLPGT
                     YDRPDPRIKQLARRSTVTPGGAACKYNDIIPADHCLHDVQDMSRLNHPKADLSKGQYG
                     TVGQGLHIAKKLLPFIPANAGILLVPCCRGGSAFTTGADGTYSDASGASENSTRWGVD
                     KPLYKDLIGRTKAALEKNPKNVLFAVVWMQGEFDFGGTPANHAAQFGALVDKFRADLA
                     DMAGQCVGGSAGGVPWICGDTTYFWKQKNESTYQTVYGSYKNKTEKNIHFVPFMTDEN
                     GVNVPTNKPEEDPDIRGIGYYGSKWRDSSATWTSQDRAS"
BASE COUNT          228 a          227 c          300 g          192 t
ORIGIN      
        1 ctgatgcagg cgattgcagc agaaggtgca gtaatcagcg ccaccagcga cccggagtat
       61 tactttgttg tggttctggc agggcagtca aacggcatgt cgtatggtga aggccttccg
      121 ctgccgggga catatgaccg tccggacccg cgtattaagc aactggcgcg tcgcagtacg
      181 gtgacaccgg gcggtgcagc atgcaaatat aacgacatca ttccggcgga ccattgtctg
      241 catgatgtgc aggacatgag ccgtcttaac catccgaaag cggacctgtc aaaggggcag
      301 tacggaaccg tggggcaggg gctgcatatc gccaaaaaac tgctgccgtt tataccggcg
      361 aatgcgggca ttctgctggt tccgtgctgt cgtggtggtt cagcgttcac caccggagct
      421 gatggcacat acagtgacgc gagtggtgcc tcggagaatt caacccgctg gggtgtggac
      481 aagccgctgt ataaggacct tatcggtcga acaaaagcgg cactggagaa gaacccgaaa
      541 aatgtgctgt ttgccgtggt gtggatgcag ggggaatttg attttggcgg tacgccggca
      601 aatcatgccg cacagtttgg tgcgctggtt gataaattcc gtgcagacct ggcggatatg
      661 gcaggccagt gcgtcggtgg ctctgctggc ggtgttccct ggatatgcgg ggacacgacg
      721 tatttctgga agcagaagaa cgaatccacg taccagacgg tgtacggcag ctataaaaat
      781 aaaacggaaa agaatatcca tttcgtaccg ttcatgaccg atgagaacgg ggtgaatgtg
      841 ccgacgaaca aaccggaaga agacccggac attcggggta tcggttatta cggttcgaaa
      901 tggcgtgaca gctcagccac ctggacgtca caggacaggg cgagcca
//
LOCUS       DAJVUP010000348          936 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.356, whole genome shotgun sequence.
ACCESSION   DAJVUP010000348 DAJVUP010000000
VERSION     DAJVUP010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.356"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..559
                     /gene="envY"
                     /locus_tag="OQQ75_004345"
     CDS             <1..559
                     /gene="envY"
                     /locus_tag="OQQ75_004345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator EnvY"
                     /protein_id="HCS1978427.1"
                     /translation="FLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKP
                     CEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVAS
                     SLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYF
                     ISVFKAFYGLTPLNYLAKQRQKVMW"
     gene            complement(605..681)
                     /locus_tag="OQQ75_004346"
     tRNA            complement(605..681)
                     /locus_tag="OQQ75_004346"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(645..647),aa:Arg,seq:tct)
BASE COUNT          259 a          226 c          216 g          235 t
ORIGIN      
        1 gtttttaaat aagaacttaa cctgtgtaaa gccctggtcg cggctggcaa ccccggttat
       61 cgcttgtcat agccgtacac cggaagtgtt ccggctagcc gccaaccaca gcaagcagca
      121 acccagcaaa ccctgcgaag cggagttgac gcgcgcatta ctttttaccg tattgtctaa
      181 ctttcttgag caatcgcggt ttattgccct actgatgtat atcttacgca gcagcgtccg
      241 cgacagcgtc tgccgcatta ttcaaagcga tattcagcat tactggaatc tgcgaattgt
      301 cgccagttcg ctatgtttaa gccccagcct gctcaaaaag aaattaaaaa acgaaaatac
      361 cagctatagc cagattgtca cagagtgtcg tatgcgttac gccgtacaga tgttattgat
      421 ggataacaaa aatatcactc aggtggcgca attatgtggc tatagcagca cgtcgtactt
      481 tatctctgtt tttaaggcgt tttacggcct gacaccgttg aattatctcg ccaaacagcg
      541 acaaaaagtg atgtggtgaa gggcaaagcg gaaacggata agacgggcat aaatgaagaa
      601 gaaatggcgc gccctgcagg attcgaacct gcggcccacg acttagaagg tcgttgctct
      661 atccaactga gctaagggcg cgttgatacc gcaatgcggt gtaatcgcgt gaattatacg
      721 gtcaaccctt gctgagtcaa tggcttttga tctggttgct gaacaagtga acgaccgcgt
      781 ctgattttct gatttatttc gctatagcgg caaacaaacg cacaccgctg cgcgtctgaa
      841 tcaagaaaac ccgtattttc atgtatcaaa gtacaattta ccgccctaac ggaaaattgt
      901 ccgctcctat gagactggta actatgaaac caacgt
//
LOCUS       DAJVUP010000349          920 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.357, whole genome shotgun sequence.
ACCESSION   DAJVUP010000349 DAJVUP010000000
VERSION     DAJVUP010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.357"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..648
                     /gene="ospC4"
                     /locus_tag="OQQ75_004347"
     CDS             <1..648
                     /gene="ospC4"
                     /locus_tag="OQQ75_004347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC4"
                     /protein_id="HCS1978428.1"
                     /translation="KTDVPIFNTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPV
                     SLDRIINFVFQLEYHIPRMLSTDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAH
                     QALAYSLGNKKADIALYLLSKFNFTKQDVAEMEKMNNNRYCNLYDVEYLLSKDGANYK
                     VLEYFINNGLVDVNKKFQKANSGDTMLDNAMKSKNPKMIDFLLKNGAILGKRFEI"
BASE COUNT          326 a          142 c          179 g          273 t
ORIGIN      
        1 aaaactgatg ttccaatatt taacactaaa gatatgaggc ttggaattgg gttgcatctt
       61 attgatttta taagaaagag taaagatcaa ggattcagag agttttgtta taacaaaaat
      121 attgatcctg ttagtctgga tagaattata aactttgtgt ttcagcttga gtatcatata
      181 ccaagaatgc taagtacaga taacttcaaa aaaataaaac tcagagacat atctttggag
      241 gatgcgatta aagcatctaa ttatgaagag attaacaata aagtgactga taaaaaaatg
      301 gctcatcagg cccttgctta ttctttaggc aataaaaaag ctgatatagc actttattta
      361 ctatctaaat ttaattttac aaaacaagat gtcgcagaga tggagaaaat gaacaacaat
      421 agatattgta atctgtatga tgttgaatac ttacttagta aagatggtgc caactataaa
      481 gtgctagaat attttatcaa taatggattg gttgatgtaa acaaaaaatt tcaaaaagca
      541 aatagtgggg acactatgct tgacaatgca atgaaaagca aaaatccaaa aatgattgat
      601 tttttattaa aaaatggagc aatattaggc aaacgatttg agatatgacc taaaagctcg
      661 gccaaataat aatgtcgtcg attatcgaag tcatcatgag tgattctgtc cccacagtgc
      721 agcatcagca tgacagtgaa ttgtctggcg tggtccattt aatgagatgg agatggtccc
      781 tctttcctaa atagctgtgc ctaataccgc tacacttttg ccagcccatg tttgcctccg
      841 gggaatgggc tgacggttcc ttcaaaatcc attgcacgca gttatgtcgg agcgggaact
      901 tgactcctgt ctttacggga
//
LOCUS       DAJVUP010000350          920 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.358, whole genome shotgun sequence.
ACCESSION   DAJVUP010000350 DAJVUP010000000
VERSION     DAJVUP010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.358"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>920)
                     /locus_tag="OQQ75_004348"
     CDS             complement(<1..>920)
                     /locus_tag="OQQ75_004348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS1978429.1"
                     /translation="RFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLVGCVLTLSL
                     LVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFIST
                     KMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDT
                     AYCIKYAILAFLALLPFLAVAGYIIFEQILNAYDSSVYANDDIENLQQFMEMQRKMII
                     AQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISG
                     ITGGLAYPLLKIWMIDWQAKNTYLLGDLDDL"
BASE COUNT          353 a          207 c          141 g          219 t
ORIGIN      
        1 aggtcatcca aatcgcccag caaatacgta ttttttgcct gccagtcaat catccatatt
       61 ttcagcagtg gataagccag accgcccgta atcccggata tcactaccaa cgcacacatg
      121 cgataaagca taccgtggta cgttaaagtt gagcgaaaac gaatacgccc atcattcagt
      181 gacaggttac tcataaaatg atttcgcaac gacaccgtta aataactggt gctaacagca
      241 atcccaaaat aatagattaa ctgcgcgatt atcattttac gttgcatttc cataaattgc
      301 tgtaaattct caatatcatc atttgcatac acagaactat catacgcatt taatatttgt
      361 tcgaagataa tataaccagc aacagcgaga aaaggtaata aagctaaaaa tgcgaggatg
      421 gcatatttta tacaatacgc agtatctaat ttcaccttga aacgatgtat accgaaactg
      481 gtattgctcc agagaaaact cattaccagg ctatataaag taccattaaa aataccaatg
      541 gaaacaatac caactattgc catcagaacc acagatataa taacactact tgaactattg
      601 gcatgtagca tctttgtcga gataaagaaa acagtcccca tcccaatggc cattaaaatc
      661 ggcaagaaaa aggttaccca ccagaaccct ttcatagagc aattaaaact aaatcttacg
      721 ccgttgagac tagtcatcaa ggcctgataa cgcagtcctt ttgctgccat aaatataagc
      781 aaaaccaaca gtgacaaagt caaaacacag ccaacaagcg gcatatctgc tgacactgtc
      841 attaagattg cgaaatagaa aaaaacaaaa acaagacaac taaaaaaaac attcccacca
      901 gtaattccat aagaaaatcg
//
LOCUS       DAJVUP010000351          913 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.359, whole genome shotgun sequence.
ACCESSION   DAJVUP010000351 DAJVUP010000000
VERSION     DAJVUP010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.359"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..794
                     /locus_tag="OQQ75_004349"
     CDS             <1..794
                     /locus_tag="OQQ75_004349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS1978430.1"
                     /translation="GSDVKNVQPGDHVVVDPIMACMECRACKAGRFNLCEPPQVASFR
                     APGFARSQHIVPARNCHVAPASLPLKVLAFAEPAACARHCVNRMPKASLESVLVIGAG
                     TIGLSIVQALRIMGAGKITVIEPDAAKRALALKLGAAEVWAPGELAADVRFTGAIDVV
                     AAQATLNDACTRVYAGGTVVCMGVPSGPREIPLPMMQRFERDLLNSGMYIPEDFDAVI
                     EWLADGRFDTSELVTDLFAIEDAAAAFERAQQNDSIKVMLQFAPE"
BASE COUNT          206 a          230 c          255 g          222 t
ORIGIN      
        1 ttggcagcga cgttaaaaat gtacagccgg gcgatcatgt tgtggtcgat cccatcatgg
       61 cttgcatgga atgccgagcc tgcaaagcag gacgttttaa tctttgtgaa ccaccgcagg
      121 ttgctagttt tcgcgcaccg ggctttgctc gctcacaaca cattgttcct gcgcgtaatt
      181 gccatgtcgc accagcctct ttaccgctaa aagtgttggc ctttgccgaa ccggcggctt
      241 gtgcccgtca ctgcgttaac cgaatgccga aagcttctct ggaaagcgta ctggtaattg
      301 gtgccggaac gataggctta tccatcgtgc aggcactgcg cattatgggg gcaggtaaga
      361 ttaccgtgat tgaacctgac gctgccaaac gcgcgctggc gttaaagctg ggcgcagcag
      421 aagtttgggc accaggtgag ctggccgcag atgtgcgatt tacgggggcg attgatgtcg
      481 ttgcagcgca ggccacgctt aacgatgcat gtacccgtgt atatgccgga ggcaccgtcg
      541 tgtgcatggg cgtaccaagt gggccgcgtg aaataccatt accgatgatg caacgtttcg
      601 agcgtgactt gctcaactct ggcatgtaca tccctgaaga tttcgatgct gttatcgaat
      661 ggctggcgga tgggcggttt gataccagtg aactggttac cgatttattt gccattgagg
      721 atgcagcggc ggcatttgaa cgcgcgcagc aaaatgactc cataaaggtc atgctgcaat
      781 ttgcgccgga atgattttct aaatctctgt ctggcgctgc gtcacgtcag cgccacccta
      841 caacaattaa aaaggacact gcgatgagtc aaatcaccag tcctgcaact tattcaatta
      901 gtcggccaca gga
//
LOCUS       DAJVUP010000352          908 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.360, whole genome shotgun sequence.
ACCESSION   DAJVUP010000352 DAJVUP010000000
VERSION     DAJVUP010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.360"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(35..371)
                     /locus_tag="OQQ75_004350"
                     /pseudo
     CDS             complement(35..371)
                     /locus_tag="OQQ75_004350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502602.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          293 a          164 c          165 g          286 t
ORIGIN      
        1 gatggtttaa ataccccgtt acttttgact tacactatac ggtatcgcat cgtttaatat
       61 tcgcaccggc cagattttta tttctattag ttgtcacaat actgaatgcg tacgaccaca
      121 gtattctggc tcctgtgtgg tcatgcttta attctgcgtt ccggacagat aagcagttgc
      181 ttgcaggaat ccttcttgtg ttaatgtcag ttcccctttt taccagtgct gatttccaca
      241 ttccgtccaa cagagcttat agcctttccc tggattatag cattgtccgg ctgaagttct
      301 ttttgaataa taatagaagc actgctggca gatccagtcc gtttttcata acccactgta
      361 ctgataacca taatctaatc agtagaaatt gagtcgaaaa taagcactac tccatacagg
      421 ataattagag gtcagtttga ttattcacaa ttcattatca gcattttctg tttctgacga
      481 aatcaacatg aaaagaacca tatatgataa ttattataat aacggcttta attggaatac
      541 atatattaca acgtattata tataattggt attctgggaa ctatattctc aaaatacagt
      601 agaaacgagg tatgtttctg gtggaaagga cagtgggatt aaaaagtaag aattgataaa
      661 aaaacgccag caacacatag tgccggcgga gggaataccc catggagaaa atgtgatgcc
      721 tagagcacca tgaatatata attaaaaata gttagagttg tcaatacttt cacaaaaata
      781 attttcgtag tttcgtagta tagaaagata tttttatgca tgacctacct gaatttgctc
      841 cgggtagagg ttataaataa aaattgaatc acgacaaaca caatattcat agtatggcga
      901 tgcctacg
//
LOCUS       DAJVUP010000353          906 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.361, whole genome shotgun sequence.
ACCESSION   DAJVUP010000353 DAJVUP010000000
VERSION     DAJVUP010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.361"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>906
                     /gene="pdeB"
                     /locus_tag="OQQ75_004351"
     CDS             <1..>906
                     /gene="pdeB"
                     /locus_tag="OQQ75_004351"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeB"
                     /protein_id="HCS1978431.1"
                     /translation="GKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDV
                     IPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPFPEM
                     NISIITWASTKMLQKGWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIE
                     NRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLI
                     IRSVFEDMGDWLRQHPQQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALELTE
                     REFADPKTSAPIISRYREAGHEIYL"
BASE COUNT          230 a          221 c          214 g          241 t
ORIGIN      
        1 caggtaaaat ttcgaaagat ggttatcgtg tctggttaac atcgcataac gatttaggca
       61 ttatccgtta catggtcgcc atgggaacgg cacattatgt cgtcatgatc gaccccgctt
      121 cctttattga tgtcattccc tatagctcat ggcaaattga tgccgccatt attggcaatg
      181 cccataacgt tgtcataacc agcagcgatg aaattgctca gggaattatt accaggctac
      241 aaaaaacacc cggtgagcat atcgaaaata atggaatcat ttacgatatc ctgcccttcc
      301 cggagatgaa tatttcgatc atcacctggg cttcaacgaa aatgttgcag aaaggctggc
      361 atcggcaagt ctttatttgg ttaccgctcg ggttggtgat tggcctgctg gcagcgatgt
      421 ttgtgctgcg tattttgcgc cgtatccagt caccgcatca tcggctgcag gatgctatcg
      481 aaaatcgtga tatttgcgtg cactatcagc cgattgtctc cttagccaat ggcaaaattg
      541 tcggtgctga ggcactggcg cgctggccgc agacagacgg tagttggttg tcaccagata
      601 gttttattcc gctggcacag caaacaggcc tttctgagcc attgacgcta ctgattataa
      661 gaagcgtctt tgaagatatg ggcgactggc tgcgtcagca tccacagcag catatttcga
      721 tcaatcttga atccaccgtg ctcacctcgg aaaaaatccc gcaattgctg cgtgaaatga
      781 tcaatcacta tcaggttaat cccagacaga tcgcgcttga actcactgaa cgcgagtttg
      841 ccgatccgaa aaccagcgcc ccgataattt ctcgctaccg ggaggcgggc catgaaattt
      901 atcttg
//
LOCUS       DAJVUP010000354          904 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.362, whole genome shotgun sequence.
ACCESSION   DAJVUP010000354 DAJVUP010000000
VERSION     DAJVUP010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..904
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.362"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            45..323
                     /locus_tag="OQQ75_004352"
     CDS             45..323
                     /locus_tag="OQQ75_004352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005028610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2612 domain-containing protein"
                     /protein_id="HCS1978432.1"
                     /translation="MSDAVYRRLILMKAMSNITDCSVPDINRMLRFMFGKKRRAYVLN
                     NGGLRMSYIFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ"
     gene            310..>904
                     /locus_tag="OQQ75_004353"
     CDS             310..>904
                     /locus_tag="OQQ75_004353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000647603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978433.1"
                     /translation="MKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFP
                     PVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAIL
                     AGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTVRDN
                     LQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNE"
BASE COUNT          234 a          205 c          255 g          210 t
ORIGIN      
        1 aggcaccgtt ttacaacgga aaatcggata cccggactgt tgacctgtct gatgctgtat
       61 accggcggct gatactgatg aaagccatgt cgaacattac tgactgttcc gttccggata
      121 ttaaccggat gctgagattt atgttcggaa aaaaacggcg agcttatgtt ctgaataatg
      181 gtgggctgag gatgagttac atctttgagt ccgcgctctc gttggcagaa ctggcgatta
      241 tccagtcgtc gggtgcactg ccgtccccgc cgggtgttta tgtttcagta gttttaaagg
      301 agtcccgtaa tgaaggccag tgataaaccc cgccagctgg cggtcccctt tgcgagtacc
      361 ggagataaaa accgtatccc ggacaaggcg acacagcaga ccagagagag cggtaatgct
      421 gcgtatgatt caggttttcc tccggtgacc atgacagcgg tctcagcggg aggtataccg
      481 ccacacggca aggattttaa cggtctgatg tacgatatta ccgcagcaat acggttcgcc
      541 caggctggcg gtttgtacac gtataatgcc ggttttgcgg gggccattgg tggatatgca
      601 aaaggagcca ttctcgccgg agtcgcaaca acagcggtct ggctgaatac cacagacgat
      661 aacctgaccg atcctgaagg ctccgacagt gcgggctggg taaatcttct tgaggatccg
      721 aaaaggatat tcctgcggca gaagaacaat ctgtcagacc ttcagaataa agggacggta
      781 cgggataatc ttcaggttta cagtaaagag cagtcagatc aacgctatgt tcatcgggaa
      841 ggcgataaaa taaccggaga gctgaaaatc cgtggtgtta atgcgctgag gattttcaac
      901 gaag
//
LOCUS       DAJVUP010000355          892 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.363, whole genome shotgun sequence.
ACCESSION   DAJVUP010000355 DAJVUP010000000
VERSION     DAJVUP010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.363"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..510
                     /locus_tag="OQQ75_004354"
     CDS             <1..510
                     /locus_tag="OQQ75_004354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1978434.1"
                     /translation="LSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANA
                     EDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYL
                     RVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDG
                     FIVGVGYKF"
     gene            574..>892
                     /locus_tag="OQQ75_004355"
     CDS             574..>892
                     /locus_tag="OQQ75_004355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1978435.1"
                     /translation="MAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTD
                     NNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEV
                     MKRF"
BASE COUNT          195 a          204 c          287 g          206 t
ORIGIN      
        1 ctgagcgccg ggtatcttca gccccatact gatatgccag gcagcgatga cctgaagggc
       61 attaacgtga aataccgtta tgagtttacg gacacgttgg ggctggtgac gtcattcagc
      121 tatgccaacg ctgaagatga gcaaaaaacg cattacagcg atacccgctg gcatgaggat
      181 tccgtgcgta accgctggtt cagcgtgatg gcggggccgt ctgtgcgcgt gaatgaatgg
      241 ttcagcgcgt atgcgatggc gggcgtggct tacagccgtg tgtcgacctt ctccggggat
      301 tatctccgcg taactgacaa caaggggaaa acgcacgatg tgctgaccgg gagtgatgac
      361 aaccgccaca gcaacacgtc tctggcgtgg ggggctggcg tgcagtttaa cccgaccgaa
      421 tccgtggcca ttgaccttgc ttatgaaggt tccggcagtg gcgactggcg cactgacggt
      481 ttcatcgtgg gtgtcggtta taagttctga ttagccaggt aacacagtgt tatgacagcc
      541 cgctggttca ggcgggcttt ttgtggggtg aatatggcag taaagatttc aggtgtactg
      601 aaagatgggg cgggtaaacc tgtcgtaaat tgtgcgattg aactgcgggc cagaagaacc
      661 agtccgaccg ttgtggcaca cgttgttgcc acttgcgtga cggacaataa cggtgcttat
      721 gtgattgagg ctgagccggg gtattacgag gttgcgcttc actgtaacgg ctggcagcca
      781 acccgtgtcg gggatattga tgtggcaccg actgatgcac cggggacact gaacgcgttt
      841 ctgaatgcac caaaggatgg tgatttacgt ccggaggtga tgaagcgctt tg
//
LOCUS       DAJVUP010000356          837 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.364, whole genome shotgun sequence.
ACCESSION   DAJVUP010000356 DAJVUP010000000
VERSION     DAJVUP010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.364"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>837
                     /locus_tag="OQQ75_004356"
     CDS             <1..>837
                     /locus_tag="OQQ75_004356"
                     /inference="COORDINATES: protein motif:HMM:NF019996.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708022.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1978436.1"
                     /translation="TLNDFLIAPDEGDLKPDVVKRFEEMVVQAQQSAGAAAGNAQQTA
                     QDVAAAATARDDAQRFAENARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGY
                     ARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIY
                     DRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYDIIIPDT
                     RFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINIT
                     TED"
BASE COUNT          224 a          221 c          242 g          150 t
ORIGIN      
        1 acgctgaatg actttctgat tgctcctgat gagggcgacc tgaaaccgga tgtcgtcaaa
       61 cgctttgagg aaatggtggt gcaggcgcag cagagcgccg gggccgcagc cggaaacgca
      121 cagcagacgg cgcaggatgt ggcggcagcc gcaacggccc gtgatgatgc acaacgtttt
      181 gcggagaatg ccagacagga tgcaaccgtc acagctgagg acagaaaggc cactgcggaa
      241 gatgtgacaa gcacaggagc aaatgcagcc gcagccggac agagcgcaca ggatgccgca
      301 ggttatgccc gcgcagcaga acaggccaaa aatgacattg atgctgcgct gaccggcact
      361 ctgaaaatgg ctaaccatct gtcagaaatc gcagcagcag gcgaaaaggc acaacagaag
      421 tcccgggata atctggggct gaaaagtgcg gccacgatgg aagcacagag cgacatttac
      481 gaccggacaa aaggccgtct ggcgataccc ggcgcattcg gctttgggtg tgcttttctg
      541 cctgaagatg ttatccgttt tgacactaag agtgatttcc tggcctgggt aaggaatgcg
      601 ctgccaggtg aatattccgt tgctggcccc tacgacatca tcatacccga cacacggttt
      661 gaaggggtgc tcagcatccg gtggactgat gcacgccctg agacaacaga accgcggtac
      721 agagccaaat cccttacttt ttacggcatt aacggcccca tttatcacac ccgctactgc
      781 tactggccca tatccagact gactggctgg gtgaaaataa atataaccac agaagat
//
LOCUS       DAJVUP010000357          830 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.365, whole genome shotgun sequence.
ACCESSION   DAJVUP010000357 DAJVUP010000000
VERSION     DAJVUP010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.365"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>830
                     /locus_tag="OQQ75_004357"
     CDS             <1..>830
                     /locus_tag="OQQ75_004357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1978437.1"
                     /translation="LVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQC
                     IGVEILLRWNNPRQGRISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFHV
                     GINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNVK
                     LAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIEL
                     VAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFPKCLAGSQPPPARHNGHITPIM
                     "
BASE COUNT          192 a          213 c          214 g          211 t
ORIGIN      
        1 actggtgggc tacatcgcct ggctggcgac cgcttaccgg atgagctttt cccgcgaaat
       61 caatctgggc ctggcgcaac atgagttcga attgttctgt cagcctttgc ttaatgcgcg
      121 cagccagcaa tgtattggtg tagagatttt gctgcgctgg aacaatccgc gtcagggccg
      181 gatttcaccg gatgtgttta ttcctatcgc ggaagaacat catttaattg tgccactgac
      241 ccgctatgtg atggcagaaa ccattcgtca gcgccatgtt ttcccgatga gtagtcagtt
      301 tcatgttggc attaacgtcg cacccagcca ttttcgccgt ggtgtgctga taaaagatct
      361 caatcagtac tggtttagcg ctcacccgat tcagcaactg atcctcgaaa tcaccgaacg
      421 cgatgcctta ctggatgttg attatcggat tgcccgcgag ctacatcgta aaaacgtcaa
      481 actggcgatt gatgacttcg gcaccggcaa cagttcattt tcctggcttg aaacattacg
      541 tcctgacgtg ctgaaaattg ataagtcatt taccgcagct ataggttctg acgcggttaa
      601 ctcgacggtg accgatatca tcatcgcgct ggggcaaaga ctgaatattg aactggtggc
      661 ggagggcgtg gaaacgcaag aacaggcgaa gtatttgcgc cgtcatggcg tgcatatttt
      721 gcaagggtat ttgtacgcac agccgatgcc gctacgcgat tttcccaaat gcctggcggg
      781 cagccaaccg ccgcccgccc ggcataatgg acatatcacg cccattatgc
//
LOCUS       DAJVUP010000358          817 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.366, whole genome shotgun sequence.
ACCESSION   DAJVUP010000358 DAJVUP010000000
VERSION     DAJVUP010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.366"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            201..395
                     /gene="bfd"
                     /locus_tag="OQQ75_004358"
     CDS             201..395
                     /gene="bfd"
                     /locus_tag="OQQ75_004358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HCS1978438.1"
                     /translation="MYVCLCNGVSDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR
                     AAREVMQDELMQMPEFKEIA"
     gene            468..>817
                     /gene="bfr"
                     /locus_tag="OQQ75_004359"
     CDS             468..>817
                     /gene="bfr"
                     /locus_tag="OQQ75_004359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HCS1978439.1"
                     /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVE
                     YHESIDEMKHADKYIERILFLEGTPNLQDLGKLGIGEDVEEMLQSDLRLEQEGAKDLR
                     EAIAYADSVHDYVSR"
BASE COUNT          234 a          159 c          193 g          231 t
ORIGIN      
        1 gctaaagttc tgggttaatt acacgttaat tagttttgaa ttgaaaaggg cgcttcggcg
       61 ccctttttgc tgcccgtaat ttgagctcga aatatttagt cgtaattttg ctcgctgaac
      121 tatggcgcaa ataaaactgt gctattgtaa tcataatcat tctcatttac actttgcgca
      181 gaatttgaac gggagcaatc atgtacgttt gtttgtgtaa tggtgtaagt gacaaaaaaa
      241 ttcgccaggc agtccgtcag tttcatccgc aatctttcca acaattgcgt aagtttattc
      301 ctgtgggaaa tcaatgcggt aagtgcattc gcgccgcgcg cgaagtgatg caggacgagt
      361 tgatgcagat gccagaattt aaagagattg cctgaagacc acgcttattt tttgacatcc
      421 cgctagcccc atctacgctc taatagtgga agcggaggga ctataaaatg aaaggtgatg
      481 ttaaaatcat aaattatctc aataaactat tgggaaatga gcttgtcgca atcaatcagt
      541 attttctcca tgcccggatg tttaaaaact ggggcctgat gcgtctcaat gacgtcgaat
      601 accatgaatc catcgatgag atgaaacacg ctgataaata tatcgagcgt attttgtttt
      661 tagaaggaac ccccaactta caggatttag gcaaactggg gattggtgaa gatgtcgagg
      721 agatgctgca atccgacctg cgattagaac aggaaggcgc gaaggatctg cgtgaggcta
      781 tcgcatatgc cgacagcgtt catgactatg ttagccg
//
LOCUS       DAJVUP010000359          789 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.367, whole genome shotgun sequence.
ACCESSION   DAJVUP010000359 DAJVUP010000000
VERSION     DAJVUP010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.367"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(4..324)
                     /gene="chbB"
                     /locus_tag="OQQ75_004360"
     CDS             complement(4..324)
                     /gene="chbB"
                     /locus_tag="OQQ75_004360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIB"
                     /protein_id="HCS1978440.1"
                     /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA
                     GEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK
                     AAAN"
     gene            complement(622..>789)
                     /gene="osmE"
                     /locus_tag="OQQ75_004361"
     CDS             complement(622..>789)
                     /gene="osmE"
                     /locus_tag="OQQ75_004361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmE"
                     /protein_id="HCS1978441.1"
                     /translation="EVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTC
                     AEYDTDPQAAK"
BASE COUNT          214 a          193 c          161 g          221 t
ORIGIN      
        1 aaattaattt gctgcggctt ttttaatcgc tgcaaccgca gccttaagca cgcctaaacc
       61 atcgactttg ccataaagca gcgagtcaat tacttcaacc ggtttgttgg gtaacaaacg
      121 ctggatttcg ggcaacatat aagcaatctg cggccctaat aacacgacat cggcattctg
      181 acctttttca ccagccagtg tttccggaaa tgcttcaata atgaccggaa cttcatattt
      241 ttctgcctgt gcgcgcattt ttgataccag taaagaggta gacatgcccg cagaacaaaa
      301 cagataaatg tgtttctttt ccataaaact gccctcatcg acgattatct gtcagccaga
      361 cactccgcaa gccttaacct gcttccatgc tctgggtaac ttgcgaaacc aacatgactt
      421 tttttgtggc tgaaaggagt atacggtata gacctgagca atagtatttc tttgacctta
      481 taaattgtct ctccttgacc tgcggttatg accctcttca catttcgggc aaataattcg
      541 cgaagataat taagaactca ggccaaaaaa accggcgcaa tggccggttt ccgttgttac
      601 tcaagctttc aaacgaagtg attacttcgc agcctgtgga tcagtgtcgt attcagcaca
      661 ggtctgataa ccggagttga tgacatgtcc ggtatcatct aacgcgacaa agtaggtttc
      721 tgctttacca tcacgttgac ccaggatgta ggtctggcaa gtaccacgag catggatcat
      781 gctcacttc
//
LOCUS       DAJVUP010000360          783 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.368, whole genome shotgun sequence.
ACCESSION   DAJVUP010000360 DAJVUP010000000
VERSION     DAJVUP010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.368"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            265..501
                     /locus_tag="OQQ75_004362"
     CDS             265..501
                     /locus_tag="OQQ75_004362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YcgZ"
                     /protein_id="HCS1978442.1"
                     /translation="MHQNSVTLDSAGAITRYFAKANWPTQQETLGEIVTEILKDGRNL
                     SRKSLCAKLLCRLEHATGEEEQKHYNALIGLLFE"
     gene            544..>783
                     /locus_tag="OQQ75_004363"
     CDS             544..>783
                     /locus_tag="OQQ75_004363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YmgA"
                     /protein_id="HCS1978443.1"
                     /translation="MKTSDNERIKYEITGQVVLQILRMKINFSLQTLIKQLLVMKSAE
                     EDAFRRDLIDSIIRDFSNSDSGGPNRRTATADNKSM"
BASE COUNT          257 a          131 c          154 g          241 t
ORIGIN      
        1 atcttcttgt gtctttcttt taataccaaa acataaccgt ttctttacat tgataaaaaa
       61 tggaaaaagt tgaacactag ttggcgaaaa atctcgtata gattgtcagt taaatgatgc
      121 aatatgtttt atcataacac attgttttat atgtattggc actaattgca aaaaattaat
      181 ttatcattct gtacacatat ttcgtacaag tttgctattg ttacctcact taacattgat
      241 taacattttt aacagaggcg tagcatgcat caaaattcag tgactttaga ttctgcggga
      301 gcaatcactc gttactttgc aaaagctaac tggcctactc agcaggaaac tctcggggaa
      361 attgtgactg agattttgaa agatggacgt aatctgagtc gaaagtcgct ttgtgccaaa
      421 cttctttgcc gactggaaca cgcgactggg gaagaggaac agaaacatta taatgcacta
      481 attgggttgc tttttgaata atgcaacagc ctgattattt aacaggttag ctatgaagtc
      541 gttatgaaga catctgataa tgaacgtata aaatatgaaa ttactggcca ggtggtgctc
      601 cagatactgc gcatgaagat aaatttttca ttgcagactc ttattaagca attactcgta
      661 atgaaatcgg ctgaggaaga tgctttccga cgcgatttaa ttgacagcat aattcgtgat
      721 tttagcaata gtgattcagg agggccaaac cgaagaacag cgacagctga caataaaagt
      781 atg
//
LOCUS       DAJVUP010000361          783 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.369, whole genome shotgun sequence.
ACCESSION   DAJVUP010000361 DAJVUP010000000
VERSION     DAJVUP010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.369"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>783)
                     /gene="pdeC"
                     /locus_tag="OQQ75_004364"
     CDS             complement(<1..>783)
                     /gene="pdeC"
                     /locus_tag="OQQ75_004364"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HCS1978444.1"
                     /translation="ALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQ
                     PIIDIKTEKCIGAEALLRWPSEQEQVMNPAEFIPLAEKEGMIEQVTDYVIDNVFRDLG
                     DYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVEKM
                     TPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAE
                     HIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKA"
BASE COUNT          212 a          189 c          165 g          217 t
ORIGIN      
        1 gccttcgcaa aaaaccatcc ctggcaatag cgcacgccgc gtttgcgcag ccagttaacc
       61 tgctcctcag tttcgacgcc ttcagcgatc gtttttaacc ccaggctgtg cgccagctcg
      121 atgatgtgtt ccgcaatcaa atgactggtt ttgtgggtgg tcagcgtttc aacaaacgat
      181 ttatcgattt tcaaaatatc gacattcaat gatttaaggt tatgcaagtt agagtagcca
      241 ataccaaaat catcaattgc cacttcgtaa ccagcctggc ggaaagccag aataatcggc
      301 gtcatttttt cgacatcaag aaatgcatgc tcagtcactt caaatttaat ttgctgcgga
      361 cgcaccgcgt attgctctgt tttctgattg attcgcgcta tcaaccgtga cgtatgaaaa
      421 tcggaggccg acaggttaat agaaacatag cgatctgcat gtgttgccag gtaatcgccc
      481 agatcgcgga agacattatc aataacataa tcagttacct gttctatcat cccctccttt
      541 tctgccagcg gaataaactc tgccggattc attacttgct cctgctcact aggccaacgt
      601 aacaacgctt cagcgccgat acatttttct gttttgatat cgattattgg ctggtaataa
      661 agacaaagtt gatgtttttc tagagcgcgt tgcaatttgc gtttgggaga caaatagttt
      721 tgtcgaatac gtagccagag taatagcaga acaagactcc ccaaaatacc ggcgggcaac
      781 gca
//
LOCUS       DAJVUP010000362          780 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.370, whole genome shotgun sequence.
ACCESSION   DAJVUP010000362 DAJVUP010000000
VERSION     DAJVUP010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.370"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>780
                     /locus_tag="OQQ75_004365"
     CDS             <1..>780
                     /locus_tag="OQQ75_004365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS91-like element ISSbo1 family transposase"
                     /protein_id="HCS1978445.1"
                     /translation="LACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATD
                     LWIATQLNRLPDCDWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQE
                     PGIFCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQLLL
                     KAWSEGLAMPESLSHITTESQWRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKK
                     PPIAASRLAHYNGGASLNFRYLDHKTGETATETLTQRELVA"
BASE COUNT          181 a          204 c          248 g          147 t
ORIGIN      
        1 tgctggcctg cggcacgcgg atactgggag tgaaggaata catctgcgat aaacctgagt
       61 gcccccacgt cagatacgtc actaactcat gcggcagccg tgcctgcccg tcctgcggaa
      121 aaaaggccac agacctgtgg atagcgacac agctgaatcg tcttcctgac tgcgactggg
      181 tacacctggt cttcaccctg ccggacacgc tgtggccggt gttcgaaagc aaccggtggc
      241 tgctgaatga cgtgtgccgt ctggcggtgg agaatctgct gtatgccgcc cggaaacggg
      301 ggcaggaacc cggtatcttc tgcgccatcc acacgtatgg ccgtcgtctc aactggcatc
      361 cgcatgtaca tgtgtctgta acctgtggag gtctgaataa gcatggtcag tggaaaaagc
      421 tgagcttcct gaaagacgcg atgcgttcac ggtggatgtg gaatatgcgg cagctgcttc
      481 tgaaagcgtg gtcagagggg ctggcgatgc cggagtcgtt gtcacatatc acgacggaat
      541 cacagtggag aagcctggtg ctgaaagccg gaggaaaata ctggcatgtg tacatgtcga
      601 aaaaaacggc cggcgggagg aatacggcgc gctacctggg tcgttatctg aagaagccgc
      661 cgatagcggc ctcccggctg gcacattaca acggaggggc gagcctgaac ttccgttacc
      721 tggaccacaa aacgggagaa acggcgacgg aaacgctgac acagcgtgag ctggtcgcga
//
LOCUS       DAJVUP010000363          776 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.371, whole genome shotgun sequence.
ACCESSION   DAJVUP010000363 DAJVUP010000000
VERSION     DAJVUP010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.371"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(17..196)
                     /locus_tag="OQQ75_004366"
     CDS             complement(17..196)
                     /locus_tag="OQQ75_004366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001039895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978446.1"
                     /translation="MNKPQLAESQKTALLTEAESVIRPRGRAVRLNRETDESGEARGR
                     ASVFPESVRSVVYAM"
     gene            complement(196..>776)
                     /locus_tag="OQQ75_004367"
     CDS             complement(196..>776)
                     /locus_tag="OQQ75_004367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS1978447.1"
                     /translation="REECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDV
                     APTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPFTFEWNG
                     RIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQV
                     DRNDEIYRRQREMKEELSGLDDLASIRAFDVE"
BASE COUNT          157 a          246 c          178 g          195 t
ORIGIN      
        1 actgcaccat tcataatcac atcgcataaa ccacagaccg gactgactcc ggaaaaacag
       61 aggcccgccc ccgggcctcc ccggattcat ccgtttccct gttcagcctg acagcacgcc
      121 cccgcggccg gatgacagac tccgcttcgg taagcaaagc ggtcttctgt gattccgcca
      181 gttgcggctt attcattact caacgtcaaa cgcccgaatt gaagccaaat catccagacc
      241 gctcagctcc tctttcattt cacgctgacg gcgataaatc tcatcgttgc gatcgacctg
      301 cgcctgcacc attgctgccg ccagttcttc cagttccggc atcgacagtt tcacctgctg
      361 attatcggca tcgctccacg ccatatgtgt ttgtgctgtg acagattttg ccagcatgac
      421 taccggggac aggcggccca gtgagtcggg accagcattc cagatacgac cgttccattc
      481 aaacgtgaac ggcttcgcct cctgttctgc gcgccatgct tcaatttcct gacgtctggc
      541 ctctctggcc gcttccagca tttctggtgt cacagtgaat ggggctatct caccccattt
      601 gccgctttgc agttcctgcc agatttgctg acccgtcgga gcgacatcat cagcggtggc
      661 tgtgtagggg actgcctggt ccctgtcgtc aaaaaaaacg tcacagtcta ctgcgccact
      721 ttcggtataa cggggattaa tgattttttt aatttccacg gtgcattcct cacgat
//
LOCUS       DAJVUP010000364          776 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.372, whole genome shotgun sequence.
ACCESSION   DAJVUP010000364 DAJVUP010000000
VERSION     DAJVUP010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.372"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..266)
                     /locus_tag="OQQ75_004368"
     CDS             complement(<1..266)
                     /locus_tag="OQQ75_004368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSS-motif domain-containing protein"
                     /protein_id="HCS1978448.1"
                     /translation="MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRT
                     FAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRG"
     gene            696..>776
                     /locus_tag="OQQ75_004369"
     CDS             696..>776
                     /locus_tag="OQQ75_004369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978449.1"
                     /translation="MATLTTGVVLLRWQLLSAVMMFLASTL"
BASE COUNT          222 a          179 c          163 g          212 t
ORIGIN      
        1 ccacgaataa tattcaacat tcgcttttga tgggctggag tgcaaacttg cccctgatag
       61 cgttcagctg catcgctcac taaatctgcc tggcgaataa ccagctcgga tttatccagt
      121 gccagttgag caaaggttcg gagctgatta ttcacttctg attttgccca aaggaaggca
      181 atccatagcg aaagaatgat gggaaagaga actaaaaaga taatgcccgg caacgccagt
      241 aattggtgtc gtgcacgatg actcattgct atcaatttcc tgcctgttta tacccggcca
      301 ttgtaaggtg aaaaccctgg gtaccgacgt ctttagataa atcttacggt ataaatagca
      361 cttttgcctg atttgaaatt gatacctttc taatcgtcac ctggatgaaa ataattcatt
      421 gatattcaaa attaatttcc tacaggaatg cagaggcggc gggaagatat gcccttaatg
      481 ccactgaaaa accacataat ctgtacagca ataaaagtca cggcctaata tggctaacaa
      541 acaatcaatt gtgatatatt tcacaaaatt aatgaaacaa acagagtgtt tcatttttgt
      601 gttctgcaag ccccgcgata gccagagtgt accacgcctc ccgtgaacaa cgccgcgctg
      661 tccagggcat cggctctttt cagaggaatt gtttgatggc taccctcacc actggcgtgg
      721 ttcttcttcg ctggcaactt cttagtgccg taatgatgtt tctggccagc acactc
//
LOCUS       DAJVUP010000365          776 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.373, whole genome shotgun sequence.
ACCESSION   DAJVUP010000365 DAJVUP010000000
VERSION     DAJVUP010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.373"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..473)
                     /locus_tag="OQQ75_004370"
     CDS             complement(<1..473)
                     /locus_tag="OQQ75_004370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1978450.1"
                     /translation="MLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEE
                     QRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLT
                     QLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLP"
BASE COUNT          219 a          104 c          188 g          265 t
ORIGIN      
        1 ggtaaaacag gaagagaaca taattgatta tttgagacat gaagctcctt caaagatatg
       61 gggagtgtgg gtagtgtgat tagttgattg tgggacgcat tcaataattt aagtccttga
      121 ggcaaagcag gcagttcaat aagtctgtta tagctgacat taagctgtgt aagggacgca
      181 ggcaatgggg agattaagct taaattattt ttacttatat taattgattt aattcccggg
      241 gggatttcag gtaatgttgt caggcctaat tcagacaagt ctaggttcgt ctcttggttt
      301 tgtagacatg atactagtcg ctgaaaagcg atgtctcgtt gttcttcttg tatgcggtta
      361 tttttccatt cagtccaatg ggttagataa ttttcatatg cgcggctagt gtcgattgaa
      421 taagtggaga acgaatttga aattaatctg tgattgttat ttgtcgggag cataaatatc
      481 agggcgtatt ctttatgttg agaggtgttg gattcttttt tatctgcttt gcaatgttat
      541 tggttccctt cagcagtaga caggaacttc tggaggaggc ggatatatag tttgtgtaag
      601 catattaact ccatatgtta tatattgaag aacttctgct ttacactatc ctaaactgga
      661 tcggtttaat gtaaaaaaac gatacttttt gggggagggg gcaatttttc cttaaggtat
      721 gaaaaaagga gctgaagcta tataatagct attaatgcca ctggtatcag tgaatc
//
LOCUS       DAJVUP010000366          772 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.374, whole genome shotgun sequence.
ACCESSION   DAJVUP010000366 DAJVUP010000000
VERSION     DAJVUP010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.374"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>772
                     /locus_tag="OQQ75_004371"
     CDS             <1..>772
                     /locus_tag="OQQ75_004371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS1978451.1"
                     /translation="MPLLDKLRKLYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARA
                     QRDDWLKKEILRVYDGNHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGK
                     KVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
                     GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTG
                     STGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATL"
     misc_feature    <1..74
                     /locus_tag="OQQ75_004371"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01497"
BASE COUNT          184 a          184 c          235 g          169 t
ORIGIN      
        1 tgatgccact gctggataag ctgcgtaagc tgtacggggt cggaccggta tgcagtgaac
       61 tacatattgc cccgtcaacg tattaccact gtcagcaaca gcgacatcat cctgataaac
      121 gcagtgcccg tgcgcagcgc gatgactggc tgaagaaaga gatactgcgc gtatacgatg
      181 ggaatcatca ggtatacggt gtgcgtaaag tctggcgtca gttgttacgg gaaggtatca
      241 gagtggccag atgcactgtg gcacgtctca tggcggttat gggacttgcc ggtgttctcc
      301 ggggtaaaaa ggtccgtacg accatcagcc ggaaagccgt tgccgcaggc gaccgcgtaa
      361 accgtcagtt cgtggcagaa cgacctgacc agctgtgggt ggctgatttt acttacgtca
      421 gcacatggca gggcttcgtc tatgtggcgt tcattattga tgtgtttgcc ggatacatcg
      481 tggggtggcg ggtctcatcg tccatggaaa cgacattcgt gctggatgct ctggagcagg
      541 cgttatgggc ccgtcgaccg tccggcacgg tccatcacag tgataaaggt tctcagtatg
      601 tatcgctggc ctacacacag cggcttaagg aagccggatt actggcatca acaggaagta
      661 caggcgactc gtatgacaac gcgatggcgg agagcatcaa tggtctttac aaagcggagg
      721 taatacaccg taagagctgg aaaaaccgtg cagaagtgga actggccaca ct
//
LOCUS       DAJVUP010000367          764 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.375, whole genome shotgun sequence.
ACCESSION   DAJVUP010000367 DAJVUP010000000
VERSION     DAJVUP010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.375"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..648
                     /gene="ospC2"
                     /locus_tag="OQQ75_004372"
     CDS             <1..648
                     /gene="ospC2"
                     /locus_tag="OQQ75_004372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC2"
                     /protein_id="HCS1978452.1"
                     /translation="KTDVPIFNTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPV
                     SLDRIINFVFQLEYHIPRMLSTDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAH
                     QALAYSLGNAKSDMALYLLSKFNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYK
                     VLEYFINNGLVDVNKRFQKANSGDTMLDNAMKSKDSKTIDFLLRNGAVSGKRFGR"
BASE COUNT          279 a           99 c          151 g          235 t
ORIGIN      
        1 aaaactgatg tgccaatatt taatactaaa gatatgaggc ttggaattgg gttgcatctt
       61 attgatttta taagaaagag taaagatcaa agattccgag agttttgtta taataaaaac
      121 attgatcctg ttagtctgga tagaattata aactttgtgt ttcagcttga gtatcatata
      181 ccaagaatgc taagcacaga taacttcaaa aagataagac tcagagatat atctttggag
      241 gatgccatta aagcatccaa ttatgaagaa attaacaata aggtgactga taaaaaaatg
      301 gctcatcaag ctcttgctta ttctctaggc aatgcaaaat ctgatatggc actttattta
      361 ctatctaaat ttaattttac aaaacaagat atcgcagaga tggagaaaat gaacaacaat
      421 atgtattgtg agctgtatga tgttgagtat ttacttagtg aagatagtgc caactataaa
      481 gtgctagaat attttattaa taatggattg gttgatgtaa acaaaagatt tcaaaaagca
      541 aatagtgggg acactatgct tgacaatgca atgaaaagca aagattcaaa aacaattgat
      601 tttttattaa gaaatggagc ggtatcaggc aaacgatttg ggaggtgacc taaaatatat
      661 ttaggttgtg ccctgaatct gacgttgtca tttttgttat attgatcgat ataggggatg
      721 gtgcagaccg ttcccctgca acaacacatt gcatgtggtg aacg
//
LOCUS       DAJVUP010000368          751 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.376, whole genome shotgun sequence.
ACCESSION   DAJVUP010000368 DAJVUP010000000
VERSION     DAJVUP010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.376"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(15..>751)
                     /gene="pdeF"
                     /locus_tag="OQQ75_004373"
     CDS             complement(15..>751)
                     /gene="pdeF"
                     /locus_tag="OQQ75_004373"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeF"
                     /protein_id="HCS1978453.1"
                     /translation="QRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLR
                     MKGENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPT
                     SVCQARFPFEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAID
                     DFGTGYASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEY
                     VENEEIREAVLSLGIDYMQGYLIGKP"
BASE COUNT          207 a          191 c          157 g          196 t
ORIGIN      
        1 gtatcaatta acggctacgg cttaccaata agataaccct gcatataatc gatccccaaa
       61 gagagcaccg cctcgcggat ctcttcgttt tcaacgtact ctgccactac ccgcattttc
      121 ttcattcgcg ccaggtggca aatcgatgcc actatctgat aatccagact atttgacaca
      181 atattgcgga taaaactgcc gtcaatttta agcagatcgg cattcacatt tttaagccgt
      241 gcatagctgg cgtagccggt gccgaaatca tcaatcgcaa tctggcagcc taattcctga
      301 agatgctgca aggtgatttg cgcctgctta acattggtca gagcattact ttcggtgact
      361 tcaaaaataa gttgccacgc ttcaatctga tatttagcca gcaactgact gacttcaaaa
      421 ggaaaacgag cctgacatac cgaggttgga gacagattaa tagcaaaacg gtgagcgggc
      481 atcttcgctc tgttttcagc cataaattgc agcgtatgct caatgaccca catgtcgata
      541 ctcgacgata aaccaaattc gtgcgcgacc ggcaagaagc tatcggggct gatcagttca
      601 tcattctcac ctttcatgcg cagaagaatt tcatggtaaa catcaccacg cataccggta
      661 atcggctggg ccatcaggaa aaaatggttg tgttccagcg cctgctgtag tcgattcatc
      721 atcgcgactt tatctttcaa ttcgcgttgc a
//
LOCUS       DAJVUP010000369          738 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.377, whole genome shotgun sequence.
ACCESSION   DAJVUP010000369 DAJVUP010000000
VERSION     DAJVUP010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.377"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..186)
                     /locus_tag="OQQ75_004374"
     CDS             complement(<1..186)
                     /locus_tag="OQQ75_004374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001047328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain containing protein"
                     /protein_id="HCS1978454.1"
                     /translation="MNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD
                     SFPAEWVIQCALETGTSL"
     gene            312..533
                     /locus_tag="OQQ75_004375"
     CDS             312..533
                     /locus_tag="OQQ75_004375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCS1978455.1"
                     /translation="MRPNISITLTTPHVTIERYSELTGLSIDTINDMLADGRLIRHRL
                     RKDKKREKVMINIAAMTVDALSECNLNLN"
     gene            566..>738
                     /locus_tag="OQQ75_004376"
     CDS             566..>738
                     /locus_tag="OQQ75_004376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001544403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory CII family protein"
                     /protein_id="HCS1978456.1"
                     /translation="MFDYQVSKHPHFDEACRAFALRHNLVQLAERAGMNVQILRNKLN
                     PAQPHLLTAPEIWL"
BASE COUNT          204 a          181 c          153 g          200 t
ORIGIN      
        1 aagcgaggtg cccgtttcaa gggcgcactg gattacccat tctgctggga atgagtcacg
       61 catgtagcgt gtggcgagtg tacttttaga gattcctaaa tgatcgcaca acgcctgtcg
      121 agtcttgaat ccataagctt ctaccatgcg ctctatggcg cctcgtccgc ctttctccaa
      181 attcatggtc actccaagtg aacttttatc ttgacgattt cactgtgcaa tcgtatgttt
      241 atggtgttca caaaatacaa acgatccgta ttcgtcctga ttaatcatca ttaaacgagg
      301 aatgttgcat catgagacct aacatttcaa tcactcttac cacgcctcat gtgactattg
      361 aacgctatag cgagctgaca gggctatcca tcgataccat caatgacatg ttggctgatg
      421 gacgccttat ccgtcaccgt ctgcgcaaag ataaaaaacg cgaaaaagtg atgatcaaca
      481 tagcagcaat gaccgttgat gcgctttcag aatgcaatct aaaccttaat tagttcgatt
      541 ctgaaataca tcagaggcat tgaccatgtt tgattaccaa gtttccaaac atccacattt
      601 tgatgaagcc tgtcgtgcat ttgcactgcg ccacaatctg gtgcaactgg cagaacgtgc
      661 aggcatgaat gtgcagattc tgcggaacaa gctgaaccca gctcagcctc atttattaac
      721 cgcaccagaa atctggct
//
LOCUS       DAJVUP010000370          732 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.378, whole genome shotgun sequence.
ACCESSION   DAJVUP010000370 DAJVUP010000000
VERSION     DAJVUP010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.378"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            135..564
                     /locus_tag="OQQ75_004377"
                     /pseudo
     CDS             135..564
                     /locus_tag="OQQ75_004377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          182 a          145 c          233 g          172 t
ORIGIN      
        1 attcctgccg gtatcaacgc cgacggcatg tattgccctg aatgcggtac ggttcactgg
       61 ccggatggcg ttattccgcc tttctgatgc ttccccgttt tgccgatatt tttcagcagg
      121 gaaaccgatg gcttaactgg ctggagaagc agccggtgca gatgagccgc ctggaacatt
      181 atgccggtca ggatgaaatt ggcctgcgtt acaacagcca ccggacaaaa cgagaagaaa
      241 accttgtgat gagtggcgac gagtttatgg aaaggttctc ctggcatgtg gcggataagg
      301 ggttccggat ggtgatacgg ggtcctgagt ccggtgaagc ggcgattact ggaagatgtg
      361 gtgtacgcca taacggagac agtgagaaaa acggcgaggc aaatcacaag gagagggatg
      421 tatcagcagt gactgaaggt tgacccgctg aagtgcgagc tgtgcggagg tcagatgcgg
      481 tttacggggc tgaagagggg ttaccgtctg gcagagcagg ttatgatgca tgagccgctg
      541 gctcgaatac ggtggtgcgg ctgagagtcg cagaggggaa gttgcgtcca tgttgagggg
      601 aacggagcaa aaaaccatca gagatacatt gaatcaatca atgtaagcaa tattaagtgt
      661 ctataccgat tacttgatga tcaggttgtg ttgaataaac gcgcattctt cggtgctttt
      721 ttaatctttt gg
//
LOCUS       DAJVUP010000371          727 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.379, whole genome shotgun sequence.
ACCESSION   DAJVUP010000371 DAJVUP010000000
VERSION     DAJVUP010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.379"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            46..>727
                     /locus_tag="OQQ75_004378"
     CDS             46..>727
                     /locus_tag="OQQ75_004378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707877.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS1978457.1"
                     /translation="MPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFS
                     NARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLR
                     DQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVL
                     RRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLALLPHAHQQQNPPQEETVVS
                     IAVDPESPA"
BASE COUNT          165 a          201 c          206 g          155 t
ORIGIN      
        1 gttccggaac tcgggctggt ggtccttaag ccaggccgtg aatccatgcc ggtattccac
       61 aatacccggg tactggtgga gccggaaccg aaaagcatgc gtaatctgcc gtccggggtc
      121 gttcctgccg ttcgccagcc gctagtggaa gacaaaacat tgctgccgtt tttcagtaac
      181 gcacgggtga ttcgtgctgc tggtggtgct ggtgcattgt ctgactggct gttgcgccat
      241 attaaatcct gccagtggcc acacggcgat tatcatcaca gcgaaaccgt cattcaccgt
      301 tatggtaccg gcgcaatggt gttgtgctgg cactgcgaca accagttgcg tgaccagaca
      361 tccgaatcac tcgagcaact tgctcatcaa aacctgtcag catggatgat tgacgtcatc
      421 ggtcacgcaa taagcggtac gcaggagcgt gaattatctc tggctgaatt atcctggtgg
      481 gcggtccgca atcaggtggc ggacgcgcta ccggaagcag tattacgtcg ttcgctgggg
      541 ttgcgtgcgg aaaaaatccg ctcaatgtac cgtgaaagcg acatcgtgcc gggagagcag
      601 accgccacca gcatactgaa gcagcgcaca aaaaatcttg cgctgctgcc tcacgcccac
      661 cagcaacaga atccaccaca ggaagagacg gtggtcagca ttgccgttga tccggaatct
      721 ccggctc
//
LOCUS       DAJVUP010000372          713 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.380, whole genome shotgun sequence.
ACCESSION   DAJVUP010000372 DAJVUP010000000
VERSION     DAJVUP010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.380"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(15..635)
                     /locus_tag="OQQ75_004379"
                     /pseudo
     CDS             complement(15..635)
                     /locus_tag="OQQ75_004379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290934.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
BASE COUNT          166 a          183 c          161 g          203 t
ORIGIN      
        1 acggcttcac gctagcgtgc gcctgtgctt aagcatatct taactaccag tgccagaatt
       61 gggtcctgac gtttgcaatc agccagcaat tcaacaatct gctcatgggt aagccatgcc
      121 atctcttttt ctgcgatggt gaattttcgc atgttctcca gtgggttcgg atacgaccat
      181 tcgcccagac gggatagttc gctaaaaaca ctacttagat agctttgctc caggttaatg
      241 gtgaccgggc ttgctccttt cttccatttc tcgctgaagt agatcccgcc tgtcaggcgt
      301 ttatctcgat agtgggcaaa cattttagag gtgagatcgg ttgcaagagg attgcccaga
      361 gcgtcaacca tcaacagcaa tttgtcatag acatgctgcc cagctgtcag agatttacca
      421 tgtagtttga accatagctc aaccacgtct ttcagtgttc gacgatccac tgattcaccc
      481 agccagggct ttgcttcggt ttcttccatc gtgtggcgct caaaagccag tgcttcgcct
      541 ttggtggcga attgtttacg cacacgacgc ccacttcgtc cggcggggta acattcgcaa
      601 agccatttcc cagtggtgag ttttcgtact gccataaaaa atgccctcca gtagagagta
      661 tttttactgt atgtataacc agtgtcaatg tatgaaatcc tacgaccata cat
//
LOCUS       DAJVUP010000373          713 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.381, whole genome shotgun sequence.
ACCESSION   DAJVUP010000373 DAJVUP010000000
VERSION     DAJVUP010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.381"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(1..479)
                     /locus_tag="OQQ75_004380"
                     /pseudo
     CDS             complement(1..479)
                     /locus_tag="OQQ75_004380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001368704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            483..713
                     /locus_tag="OQQ75_004381"
                     /pseudo
     CDS             483..713
                     /locus_tag="OQQ75_004381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT          164 a          201 c          166 g          182 t
ORIGIN      
        1 ccttcgacaa caccattact ccagcgacta ctgattgcct cacatatagc tgcagcatca
       61 gcttccatcc ccgccgccac gcgccgaaat tctgctgaac cgctttcgtg gactcgagtg
      121 aaccaactgc ttagctgtga tttattttgg gttttcagaa tacggtagaa ctcgagtgcc
      181 agttgctgcg ctattttcag ctcaggttct ttttcacaca tcagactaat aaatcgggaa
      241 gcataatttt cttcatccct ggttattctc cagggcatca accagcggct tacccgggac
      301 actgaaggaa gtctgacggc agtagtaacc ggtgggttcc agcctttacg ccatttggca
      361 accgcatccc tgacgatggt ttcactgcct gtaaatcccc gggccaccat ttcccgccat
      421 atccggctgg cgttataatt accactttct cgttgctctt ttaaccactc cctccatggt
      481 gtcagcgaaa aacgaaaccg ctgttgaaat ccctggaaag ctggttgcgg aaaagatgaa
      541 gaccctgtcg cgacactcag agttggcgaa ggcgttcgcg tacgcactta accagtggcc
      601 ggcactgacg tactatgcga acgatggctg ggtggaaatc gacaacaaca tcgctgaaaa
      661 tgccttgcgg gcggtcagtc tgggtcgtaa aaacttcctg ttcttcggct ctg
//
LOCUS       DAJVUP010000374          704 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.382, whole genome shotgun sequence.
ACCESSION   DAJVUP010000374 DAJVUP010000000
VERSION     DAJVUP010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.382"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            224..493
                     /locus_tag="OQQ75_004382"
     CDS             224..493
                     /locus_tag="OQQ75_004382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978458.1"
                     /translation="MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
                     HNSWFRDQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIADK"
     gene            490..704
                     /locus_tag="OQQ75_004383"
                     /pseudo
     CDS             490..704
                     /locus_tag="OQQ75_004383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001585073.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT          181 a          163 c          199 g          161 t
ORIGIN      
        1 actgcaccat tcataatcac atcgcataaa actgtcagcg ccagtgatag gacaggtgaa
       61 acctgtcaat acgtaccggc ttacgccggg cttcggcggt tttactcctc tgccatatgc
      121 aacaacggag tgccgcctta catgccgctg gcgcggcata tcctggtgac gatatctgaa
      181 cagttatata ctgtgtatat acgtggtaat gacgaggtgg caaatggcac aggttaatat
      241 gagtgtaaga atcgacgcag aactgaagga tgcttttatg gccgctgcaa aaagcatgga
      301 ccgtaatggc tctcagttaa tccgggattt tatgcgccag accgttgaac ggcagcacaa
      361 ttcttggttc cgtgaccagg ttgcggcagg ccgtcagcaa ctcgaatgcg gtgatgtgct
      421 tccccatgac atggtcgaat cctctgctgc tgcatggcgg gatgaaatga gcaggaagat
      481 tgctgataaa tgatggagat gttctggacc atgctggcca tccaggacag gaagcgcatt
      541 cgtagtacat tgcggagcag aacctgatgg ccgccattga accggacgaa cggattggtt
      601 attcagccag cagcctggca gggcagccgt ataaaggccg caacggtcgt gtggaaggaa
      661 catctggacc acacaaggta gcgtgtaacg ttattttgtg tgaa
//
LOCUS       DAJVUP010000375          701 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.383, whole genome shotgun sequence.
ACCESSION   DAJVUP010000375 DAJVUP010000000
VERSION     DAJVUP010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.383"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..667)
                     /locus_tag="OQQ75_004384"
     CDS             complement(<1..667)
                     /locus_tag="OQQ75_004384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HCS1978459.1"
                     /translation="MIRKSATGVIVALAVIWGGGIWYTGTQIQPGVEKFIKDFNDAKK
                     KGEHAYDMTLSYKNFDKGFFNSHFQMQISFDNGAPDLNIKPGQKVAFDVDVEHGPLPI
                     TMLMHGNVIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAP
                     AEYGKFSFGEGQFTFNGDGSSLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLTRLE
                     EKKF"
BASE COUNT          210 a          154 c          124 g          213 t
ORIGIN      
        1 gaaatttctt ttcttctaat cgtgtcagag aatcaatggt aaaacttttt gccgttactt
       61 tgttcattgg tgataattgc agaacaatat cttcgacttt gccttcaata tccaggttag
      121 acaatgaact accatcacca ttaaaagtaa actggccctc accaaaagaa aactttccat
      181 actctgcagg ggcaacatct aatgtcgtag agaatgagcc accaaacgcg aatcgcaatg
      241 tcgcttccac gggcgattta tttttcgcgg cgataaatag cggttgtgtc agttcattat
      301 tcactaagtt cacttttgcc gctgccagtg ctgggatgac attaccatgc attaacattg
      361 tgatgggcaa cggaccgtgc tcaacatcca catcaaatgc aactttctgg cctggcttga
      421 tattgagatc gggtgcaccg ttatcaaatg aaatttgcat ttgaaaatgg gaattaaaaa
      481 agcctttgtc aaagttttta taacttaacg tcatatcgta ggcatgttca cctttctttt
      541 tagcatcgtt aaaatcttta ataaattttt cgacaccagg ctgaatttgc gtacctgtgt
      601 accatatgcc accaccccag attacggcta acgcaacaat aacacctgta gctgacttac
      661 gtatcatata aatattccct gataaaacag caaaactttg a
//
LOCUS       DAJVUP010000376          697 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.384, whole genome shotgun sequence.
ACCESSION   DAJVUP010000376 DAJVUP010000000
VERSION     DAJVUP010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.384"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>697
                     /locus_tag="OQQ75_004385"
     CDS             <1..>697
                     /locus_tag="OQQ75_004385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HCS1978460.1"
                     /translation="RQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLR
                     YGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWIVARDGVEVPVSLV
                     YHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQW
                     YEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFH
                     GVIAQVPFVDVVTT"
BASE COUNT          159 a          151 c          189 g          198 t
ORIGIN      
        1 cgtcagcgcg ggttaaccag tttgcgccaa attaaccgca agacccggga agtcattggt
       61 attgcctttg atgatccagc ctatgtgacc tggattgcct acaatccaga acctgaaacc
      121 gcgcgattgc gttatggtta ttcttccatg accacaccag acactttgtt tgaactggat
      181 atggataccg gtgagcgtcg tgtattaaaa caaacggaag ttcctggttt tgatgcggcg
      241 aattaccgca gtgaacacct gtggatagtc gcccgtgatg gcgtcgaagt tccggtttcg
      301 ttggtctacc atcgcaaaca ttttcgcaaa ggacacaacc cgttgctggt gtatggctat
      361 ggttcttacg gcgcaagtat tgatgccgat ttcagtttta gccgcttgag tttgttagat
      421 cgtggctttg tctacgccat tgtccatgtt cgcggcggtg gtgagctggg gcaacaatgg
      481 tacgaagacg gaaaatttct gaagaagaaa aatacgttta atgattatct tgatgcctgc
      541 gatgcattgt taaaactggg ctatggctct ccttcgcttt gttatgcgat gggcgggagt
      601 gcggggggca tgttgatggg cgttgcaatt aatcaacgcc cggaattatt ccacggcgtt
      661 atcgcccagg taccgtttgt tgatgttgta acaacga
//
LOCUS       DAJVUP010000377          695 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.385, whole genome shotgun sequence.
ACCESSION   DAJVUP010000377 DAJVUP010000000
VERSION     DAJVUP010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.385"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            43..>695
                     /locus_tag="OQQ75_004386"
     CDS             43..>695
                     /locus_tag="OQQ75_004386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="HCS1978461.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDH
                     STIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTV
                     DFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDV
                     EHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFY"
BASE COUNT          169 a          184 c          185 g          157 t
ORIGIN      
        1 tggtgataaa cttatcatcc ccttttgctg atggagctgc acatgaaccc attcaaaggc
       61 cggcattttc agcgtgacat cattctgtgg gccgtacgct ggtactgcaa atacggcatc
      121 agttaccgtg agctgcagga gatgctggct gaacgcggag tgaatgtcga tcactccacg
      181 atttaccgct gggttcagcg ttatgcgcct gaaatggaaa aacggctgcg ctggtactgg
      241 cgtaaccctt ccgatctttg cccgtggcac atggatgaaa cctacgtgaa ggtcaatggc
      301 cgctgggcgt atctgtaccg ggccgtcgac agccggggcc gcactgtcga tttttatctc
      361 tcctcccgtc gtaacagcaa agctgcatac cggtttctgg gtaaaatcct caacaacgtg
      421 aagaagtggc agatcccgcg attcatcaac acggataaag cgcccgccta tggtcgcgcg
      481 cttgctctgc tcaaacgcga aggccggtgc ccgtctgacg ttgaacaccg acagattaag
      541 taccggaaca acgtgattga atgcgatcat ggcaaactga aacggataat cggcgccacg
      601 ctgggattta aatccatgaa gacggcttac gccaccatca aaggtattga ggtgatgcgt
      661 gcactacgca aaggccaggc ctcagcattt tatta
//
LOCUS       DAJVUP010000378          689 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.386, whole genome shotgun sequence.
ACCESSION   DAJVUP010000378 DAJVUP010000000
VERSION     DAJVUP010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.386"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..214
                     /locus_tag="OQQ75_004387"
     CDS             <1..214
                     /locus_tag="OQQ75_004387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1978462.1"
                     /translation="AIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQEASGGE
                     LQYDPKVYDEYRKAKRPGKVIHENQA"
     gene            198..620
                     /locus_tag="OQQ75_004388"
     CDS             198..620
                     /locus_tag="OQQ75_004388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978463.1"
                     /translation="MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELPLVP
                     GKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLA
                     AQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVVVH"
BASE COUNT          173 a          154 c          208 g          154 t
ORIGIN      
        1 tgctatagcg ttttttggca gcaaaacaaa gcttgccaat gccgcaggag ttaggctggc
       61 aagcattgct gcatgggggg aactggttcc tgaaggccgc gcgatgcgcc tgcaagaggc
      121 atctggcggg gaacttcagt acgaccccaa agtttatgac gaatatcgta aggcaaaacg
      181 acctgggaag gtgattcatg aaaatcaggc atgagcacat cgaatcagtg ctgttagccc
      241 tggcagccga aaaagggcag gcgtgggtcg ctaacgcaat tactgaagaa tatctgcggc
      301 aggggggcgg cgaattgcct ctggtaccag gcaaggactg gaacaatcag cagaatatct
      361 atcaccgttg gttgaaaggt gaaacgaaag cgcaaaggga gaaaattcag aaactgatcc
      421 ctgcggttct ggcaattctt ccgcgtgagc tgcgtcaccg actctgtatc ttcgataccc
      481 tggaacgccg tgcattactg gcggcgcagg aagcgttgag tacggcaatt gatgcgcatg
      541 atgacgcagt tcaggccgtt taccggaaag cacatttcag cggtggtggg tcgtccgacg
      601 attctgtcgt tgtgcattga tgtttatgcc gaacctcctc tggttctgtt gattggggaa
      661 tcacagatta tatccggagg aaggttcgg
//
LOCUS       DAJVUP010000379          677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.387, whole genome shotgun sequence.
ACCESSION   DAJVUP010000379 DAJVUP010000000
VERSION     DAJVUP010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.387"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..339
                     /gene="fliG"
                     /locus_tag="OQQ75_004389"
     CDS             <1..339
                     /gene="fliG"
                     /locus_tag="OQQ75_004389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310705.1"
                     /note="One of three proteins involved in switching the
                     direction of the flagellar rotation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HCS1978464.1"
                     /translation="EFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIAL
                     KGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEM
                     VIGSGEDTYV"
     gene            332..>677
                     /gene="fliH"
                     /locus_tag="OQQ75_004390"
     CDS             332..>677
                     /gene="fliH"
                     /locus_tag="OQQ75_004390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416450.2"
                     /note="binds to and inhibits the function of flagella
                     specific ATPase FliI; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HCS1978465.1"
                     /translation="MSDNLPWKTWTPDDLAPPQAEFVPMVEPEETIIEEAEPSLEQQL
                     AQLQMQAHEQGYQAGIAEGRQQGHEQGYQEGLAQGLEQGLAKAKSQQAPIHARMQQLV
                     SEFQTTLDALDSV"
BASE COUNT          167 a          172 c          209 g          129 t
ORIGIN      
        1 gaattcgacg gcgagctggc gcaaaaaatt atcgacgaga tgttcctgtt cgaaaatctg
       61 gtggatgtcg acgatcgcag cattcagcgt ctgttgcagg aagtggattc cgaatcgctg
      121 ttgatcgcgc tgaaaggggc cgagcagcca ctgcgcgaga aattcctgcg caatatgtcg
      181 cagcgtgccg ccgatattct gcgcgacgat ctcgccaacc gtggtccggt gcgtctgtcg
      241 caggtggaaa acgaacagaa agcgattctg ctgattgtgc gccgccttgc cgaaactggc
      301 gagatggtaa ttggcagcgg cgaggatacc tatgtctgat aatctgccgt ggaaaacctg
      361 gacgccggac gatctcgcgc caccacaggc agagtttgtg cccatggtcg agccggaaga
      421 aaccatcatt gaagaggccg aacccagcct tgagcagcaa ctggcgcaac tgcaaatgca
      481 ggcccatgag caaggttatc aggcggggat tgccgaaggt cgccagcaag gtcatgagca
      541 gggctatcag gaaggactgg cccaggggct ggagcaaggt ctggcaaagg cgaagtctca
      601 acaagcgcca attcatgccc ggatgcagca actggtcagc gaatttcaaa ctacccttga
      661 tgcgcttgat agtgtga
//
LOCUS       DAJVUP010000380          670 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.388, whole genome shotgun sequence.
ACCESSION   DAJVUP010000380 DAJVUP010000000
VERSION     DAJVUP010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.388"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>670)
                     /locus_tag="OQQ75_004391"
     CDS             complement(<1..>670)
                     /locus_tag="OQQ75_004391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001714119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HCS1978466.1"
                     /translation="PFAPEADFWVGKHKLPQYEIQMLDWKTLTTDVAAGVGIENWALG
                     VGLFDMSLSRDDVDVYSRDFSRTSQMNTNSVDVRYRNIPLWDDATLSLMAKYSAPNKT
                     DQQQDNENDNSYFEMKDSWMLTSVLRQNLQRDTFNEFTLQVANNSYASSFASFSDASN
                     TMAHGRYYYGDHTNGIAWRLISQGEMYLTDNIIMANALVYSHGEDVYSYESGAHSDFD
                     SIRTV"
BASE COUNT          197 a          155 c          136 g          182 t
ORIGIN      
        1 acagtgcgaa tactgtcaaa atcactatga gcaccacttt cataactata aacatcttcg
       61 ccgtgagaat agacaagcgc gttagccata ataatattgt cagtaagata catctcgccc
      121 tgagagatta aacgccaggc gatcccattg gtatgatcac catagtaata gcgaccatgc
      181 gccatcgtat tactggcatc tgagaaactg gcaaaactgc tggcatagga attattggca
      241 acctgtaacg taaattcatt aaacgtatcg cgttgcaggt tttgccgtaa aacagaagtc
      301 agcatccagc tatctttcat ttcaaaataa ctgttgtcat tttcgttatc ttgttgttga
      361 tccgttttat taggtgcgga atatttagcc attaatgata atgtcgcatc atcccataac
      421 gggatattgc gataacgaac atccacagaa ttggtattca tctggctggt acgcgaaaaa
      481 tcacgagagt aaacatcgac atcatcacgg cttaaggaca tatcaaacag ccctacacca
      541 agtgcccagt tttcaatccc cacacccgcg gcgacatccg tggttaaggt tttccagtcc
      601 agcatctgga tctcatattg cgggagttta tgtttgccga cccagaagtc tgcctctggt
      661 gcgaagggta
//
LOCUS       DAJVUP010000381          615 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.389, whole genome shotgun sequence.
ACCESSION   DAJVUP010000381 DAJVUP010000000
VERSION     DAJVUP010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.389"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>615
                     /locus_tag="OQQ75_004392"
     CDS             <1..>615
                     /locus_tag="OQQ75_004392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1978467.1"
                     /translation="KWIVGAAAGFAKGDMNDRSGQVDQDSQTAYIYSSAHFANNVFVD
                     GSLSYSHFNNDLSATMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAGYETPYGSVSGL
                     FQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDSNN
                     DNDVNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGG"
BASE COUNT          145 a          152 c          160 g          158 t
ORIGIN      
        1 taagtggatc gtcggtgcgg ctgcaggctt cgctaaaggt gacatgaatg accgttctgg
       61 tcaggtggat caagacagcc agactgccta catctactct tctgctcact tcgcgaacaa
      121 cgtctttgtt gatggtagct tgagctactc tcacttcaac aacgacctgt ctgcaaccat
      181 gagcaacggt acttacgttg acggtagcac caactctgac gcgtggggct tcggtttgaa
      241 agccggttac gacttcaaac tgggtgatgc tggttacgag actccttacg gcagcgtttc
      301 tggtctgttc cagtctggtg atgactacca gctgagcaac gacatgaaag ttgacggtca
      361 gtcttacgac agcatgcgtt atgaactggg tgtagatgca ggttatacct tcacctacag
      421 cgaagatcag gctctgactc cgtacttcaa actggcttac gtctacgacg actcaaacaa
      481 cgataacgat gtgaacggtg attccatcga taacggtact gaagggtctg cggtacgtgt
      541 tggtctgggt actcagttca gcttcaccaa gaacttcagc gcctataccg atgctaacta
      601 cctcggtggt ggtga
//
LOCUS       DAJVUP010000382          615 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.390, whole genome shotgun sequence.
ACCESSION   DAJVUP010000382 DAJVUP010000000
VERSION     DAJVUP010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.390"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..99
                     /gene="csgB"
                     /locus_tag="OQQ75_004393"
     CDS             <1..99
                     /gene="csgB"
                     /locus_tag="OQQ75_004393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309446.1"
                     /note="CsgB; functions as a nucleator in the assembly of
                     curli (coiled surface structures) on the cell surface;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curlin minor subunit CsgB"
                     /protein_id="HCS1978468.1"
                     /translation="SGNKANITQYGTQKTAIVVQRQSQMAIRVTQR"
     gene            140..595
                     /gene="csgA"
                     /locus_tag="OQQ75_004394"
     CDS             140..595
                     /gene="csgA"
                     /locus_tag="OQQ75_004394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curlin major subunit CsgA"
                     /protein_id="HCS1978469.1"
                     /translation="MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSE
                     LNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSAT
                     LDQWNGKNSEMTVKQFGGGNGAAVGQTASNSSVNVTQVGFGNNATAHQY"
BASE COUNT          164 a          139 c          153 g          159 t
ORIGIN      
        1 tctggtaata aagcaaatat tacacagtat ggtactcaaa aaacggcaat tgtagtgcag
       61 agacagtcgc aaatggctat tcgcgtgaca caacgttaat ttccattcga cttttaaatc
      121 aatccgatgg gggttttaca tgaaactttt aaaagtagca gcaattgcag caatcgtatt
      181 ctccggtagc gctctggcag gtgttgttcc tcagtacggc ggcggcggta accacggtgg
      241 tggcggtaat aatagcggcc caaattctga gctgaacatt taccagtacg gtggcggtaa
      301 ctctgcactt gctctgcaaa ctgatgcccg taactctgac ttgactatta cccagcatgg
      361 cggcggtaat ggtgcagatg ttggtcaggg ctcagatgac agctcaatcg atctgaccca
      421 acgtggcttc ggtaatagcg ctactcttga tcagtggaac ggcaaaaatt ctgaaatgac
      481 ggttaaacag ttcggtggtg gcaacggtgc tgcagttggc cagactgcat ctaactcctc
      541 cgtcaacgtg actcaggttg gctttggtaa caacgcgacc gctcatcagt actaatacat
      601 catttgtatt acaga
//
LOCUS       DAJVUP010000383          604 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.391, whole genome shotgun sequence.
ACCESSION   DAJVUP010000383 DAJVUP010000000
VERSION     DAJVUP010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.391"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..588
                     /locus_tag="OQQ75_004395"
     CDS             <1..588
                     /locus_tag="OQQ75_004395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein"
                     /protein_id="HCS1978470.1"
                     /translation="TITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINK
                     NCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPA
                     VAFRGAKHERKNNNIYSSCSLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLE
                     FSVSAWLVNGWYPTASISDLLVVVMKKATAGITIS"
BASE COUNT          160 a          140 c          161 g          143 t
ORIGIN      
        1 accattacca gcggcggtaa tcctccggca ttttccctga cacctggcgg acggctgacg
       61 gcgaaaaatg ccgatatcag cggtaacgtg aacgcgaact ccgggacgct caacaacgtc
      121 acgattaata agaactgtcg ggttctggga aaattgtccg cgaaccagat tgaaggcgat
      181 ctcgttaaaa cagtgggcaa acctttccca cgggactccc gggcaccgga gaggtggcca
      241 tcagggacca ttaccgtcag ggtttatgac gatcagccgt ttgatcggca aattgttatt
      301 cccgcggtgg cgtttcgcgg tgctaaacat gagcggaaga ataacaatat ttattcgtca
      361 tgcagcctga tagtgaagaa aaacggtgct gaaatttata accgaacgac cctggataat
      421 acgctgatat atacgggtgt tattgatatg cctgccggtc acggtcacat gacgctggag
      481 ttttctgtat cggcatggct ggtaaatggc tggtatccca cagcaagtat cagcgatttg
      541 ctggttgttg tgatgaagaa agccactgca ggcatcacga ttagctgaat tttataaccc
      601 agat
//
LOCUS       DAJVUP010000384          599 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.392, whole genome shotgun sequence.
ACCESSION   DAJVUP010000384 DAJVUP010000000
VERSION     DAJVUP010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.392"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(52..>599)
                     /locus_tag="OQQ75_004396"
     CDS             complement(52..>599)
                     /locus_tag="OQQ75_004396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HCS1978471.1"
                     /translation="FSETPPKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALINGI
                     IGGIGGWFGFANASLESIFGYVLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVAYLS
                     FSPYLQTGGTLEVKTIAIISFALCGFANFGSIGVVVGAFSAISPKRAPEIAQLGLRAL
                     AAATLSNLMSATIAGFFIGLA"
BASE COUNT          168 a          178 c          140 g          113 t
ORIGIN      
        1 cgcgattgcc ggatgcaacg cttaataagc gcgtacatcc ggcaatgaaa ctcaagctaa
       61 accaataaag aacccggcaa tagtcgcact catcaggttg gaaagcgttg ctgctgccag
      121 cgcccgtaaa ccaagctggg cgatttccgg cgcgcgtttt ggcgaaatag ccgaaaatgc
      181 gccaacgaca acaccgatag aaccaaagtt agcaaaacca caaagcgcaa aggagataat
      241 cgcaatggtt ttcacttcca gcgtgccgcc cgtttgcagg tatggggaga aactcaggta
      301 agcgacgaat tcgttaatcg ccagtttctg cccaatcagg ctacccgcaa gattggcatc
      361 actccagtcc acacccatga tccacgccag cggtgccagc acatagccaa aaatactttc
      421 cagagaggca ttggcgaaac caaaccagcc accaattccg ccgataatgc cgttgatcag
      481 cgcaataatt gcgacaaatg ccattaccac cgtcgctaca ccagcggcga ttttcagccc
      541 ggtcatcgca ccgctcgccg ccgcttcgat aaagcttttt ggcggcgttt cgctgaacg
//
LOCUS       DAJVUP010000385          597 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.393, whole genome shotgun sequence.
ACCESSION   DAJVUP010000385 DAJVUP010000000
VERSION     DAJVUP010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.393"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            216..575
                     /locus_tag="OQQ75_004397"
     CDS             216..575
                     /locus_tag="OQQ75_004397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001331208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1889 family protein"
                     /protein_id="HCS1978472.1"
                     /translation="MQIKVIYSLIDNMVNFKDKNMPAVIDKALDFIGAMDVSAPTPSS
                     MNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMEFGERTVIK
                     NPEYFSTYMQEELKALV"
BASE COUNT          191 a          114 c          123 g          169 t
ORIGIN      
        1 taactatata aataaacata accatgccgt tgtgttcgcc cttcgattag cacctctggt
       61 tttctttctt agctgaacaa tctggttata gcgtgcggac tgaccgttaa ttttctccat
      121 cttactggat aacacaccat gagctgctac ctttaaaaca cctgaatgtc aacaggttaa
      181 ctcgtgccat atcgttataa tccctttgat attagatgca aattaaggtc atatatagcc
      241 ttatcgataa catggttaat tttaaggata agaatatgcc tgctgtaata gataaagccc
      301 tggatttcat tggtgccatg gatgtatcag cgccaacacc aagttcgatg aatgaaagca
      361 cagcgaaggg aatctttaaa tatttaaaag aactgggagt acccgcgagt gccgctgata
      421 ttacggcgcg agctgaccag gaaggctgga accctgggtt cacggaaaaa atggttggat
      481 gggcaaaaaa aatggagttt ggtgaacgca ctgtaattaa aaatcctgaa tacttttcaa
      541 catatatgca ggaagaacta aaagcactgg tctgagttta atttatatca gcataaa
//
LOCUS       DAJVUP010000386          592 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.394, whole genome shotgun sequence.
ACCESSION   DAJVUP010000386 DAJVUP010000000
VERSION     DAJVUP010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.394"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            244..>592
                     /locus_tag="OQQ75_004398"
     CDS             244..>592
                     /locus_tag="OQQ75_004398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1978473.1"
                     /translation="MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETR
                     VDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFG
                     SVFFGNSKGTLNND"
BASE COUNT          171 a          111 c          122 g          188 t
ORIGIN      
        1 atcgccatac cctaaccaat tgcacttgtg aatttatttt tgcttaattt tgaattaaga
       61 aaatttaatt tgttcaaaag cccttaaagt gcacaatagg cgtcctaatg aacaatggtt
      121 gtaaattttg gtaacaaata tcattgctca ttaatatcta gcatctgctt ataacatttg
      181 tgtcatgaat agtcattctt caaaccagta gtctgactaa tggaatttta ttcaaggatt
      241 tttatgtcta aaaaattagg ttttgccctg tctggtctta tgctggcaat ggttgcaggt
      301 actgcttctg ctgatatgga tggtggtcag ttaaatatca gtggtctggt tgttgataac
      361 acctgtgaaa cccgcgttga cggcggtaat aaagatggtc tgatcctgct gcaaactgca
      421 actgttggtg aaatcgatgc tggcgtgctg aatgacaccg ttggcgctaa agccaaacct
      481 ttcagcatca ccgttgactg cagcaaagca aatccgaatc caggtagtac agctaaaatg
      541 accttcggtt ctgttttctt tggtaatagc aaaggaacgc tgaacaacga ca
//
LOCUS       DAJVUP010000387          583 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.395, whole genome shotgun sequence.
ACCESSION   DAJVUP010000387 DAJVUP010000000
VERSION     DAJVUP010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.395"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..308
                     /locus_tag="OQQ75_004399"
     CDS             <1..308
                     /locus_tag="OQQ75_004399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HCS1978474.1"
                     /translation="VLNGKINGNACIVVPLSTTRDHDKLNRGMHVEIASNVINGLQFF
                     DQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAILLIN"
     gene            507..>583
                     /gene="ppiC"
                     /locus_tag="OQQ75_004400"
     CDS             507..>583
                     /gene="ppiC"
                     /locus_tag="OQQ75_004400"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004097481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HCS1978475.1"
                     /translation="MAKTAAALHILVKEEKLALDLLEQI"
BASE COUNT          177 a          138 c          121 g          147 t
ORIGIN      
        1 tcgtgctcaa cggaaaaatt aatggcaacg catgtatcgt cgttccatta tcaaccactc
       61 gcgatcatga caagttaaat cgtggaatgc atgttgaaat agccagtaat gttatcaatg
      121 gcctgcaatt ctttgatcag cagattcgtt gggccaaagc cgacctggta caacaagtca
      181 gtcgaaaccg attaaataga gcaaggactt acagagggta tcttaatcaa tgtttgccac
      241 atgagttggt tgcagacata cagagggcgg tcatcaagtc aatcaatgcc atattgctca
      301 taaattgaca ataaaataac catccccgat aatgactttg tagcccatag aggccctaag
      361 ttttctcccc ttgagggacc tgcgaagccc ggattttccg ggcttttgcc atatatgtac
      421 cagcccctcc ctgactgaca attacgttag catctgcgga tcatgctaaa atcgccgcct
      481 gacaattatt cactcaaggc acgatcatgg caaaaacagc agcagcactg catatccttg
      541 taaaagaaga gaaactggct ctggatcttc tcgagcagat taa
//
LOCUS       DAJVUP010000388          577 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.397, whole genome shotgun sequence.
ACCESSION   DAJVUP010000388 DAJVUP010000000
VERSION     DAJVUP010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.397"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..483)
                     /locus_tag="OQQ75_004401"
     CDS             complement(<1..483)
                     /locus_tag="OQQ75_004401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HCS1978476.1"
                     /translation="MTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDY
                     TIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGI
                     RCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWD
                     Y"
BASE COUNT          148 a          147 c          134 g          148 t
ORIGIN      
        1 ataatcccag tacaccatgc ccggataatg cgcgacggct cgccgcccac agtcgttaac
       61 ctgctgcata tttttccagc gtgaaatgcc cagtgaactg ctgatcacac tgaaaccatt
      121 ttcagcggcg tacagcgctg tccgctcaaa acgcatgtca aaacacatgg tgcaacggat
      181 ccctcgttcg ggctcccatt ccattccttt ggctcgttca aaccagttgt ctgtgtcgta
      241 atcagcatca ataaacggca cgccgtgttg ttcagcaaag cgaatattct catccttacg
      301 aattaaatac tctttctgag gatgaatgtt cgggttgtag aaaaagatgg tgtagtcgat
      361 tcccgaggcc tgaagcgcct ccatcacctc accggaacat ggagcacagc aagagtgcag
      421 tagtagtttg tttgccccgt ttgggagctc caatttgggc cgtttgaaat cagcaactgt
      481 cataaatatg tttattgggg tcataaaaat atcaaagagt gtagcattag aacggggcta
      541 tcggaaacag atgtgtgact gctccccgcc ctttcgg
//
LOCUS       DAJVUP010000389          568 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.398, whole genome shotgun sequence.
ACCESSION   DAJVUP010000389 DAJVUP010000000
VERSION     DAJVUP010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.398"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(111..>568)
                     /locus_tag="OQQ75_004402"
     CDS             complement(111..>568)
                     /locus_tag="OQQ75_004402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1978477.1"
                     /translation="PNESDYLKLQALFARVAEEKHRRGELEKLHHQLVDTYTSLNRQY
                     AELLSEYKHLRRYFGVTVQVPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPG
                     DLIADFFMGSGSTVKAALALGRRAIGVELETERFEQTVREVQDLVSQNG"
BASE COUNT          127 a          177 c          125 g          139 t
ORIGIN      
        1 cccttgctgg atttgaacca gcgacctggc gattatgagt cgctcgctct caccactgag
       61 ctaaagggcc gggagccgca taataacgac gcgtaattaa ttcttcaata tcatccgttc
      121 tggctgacta aatcctgtac ttcccgaacc gtctgctcaa aacgttcagt ctccagctca
      181 acgccaattg cacgacgccc gagcgccagt gccgctttca ctgtcgaacc cgaccccatg
      241 aaaaaatctg caatcaggtc acccggacga ctgctagcgc tgattatctg ctgcagcatt
      301 tctgccggtt tttcgcacgg atgtttcccg ggatagaact gcaccggttt atgcgtccac
      361 acatcggtat acggcacctg caccgtcacg ccaaaatacc gccgcagatg tttatattca
      421 ctcagcagct ccgcatactg ccggttcagt gaggtatacg tatccaccag ctggtggtgg
      481 agcttttcca gttcaccacg ccgatgcttc tcttctgcca cccgggcaaa cagcgcctgt
      541 aatttcagat aatcgctttc attcggca
//
LOCUS       DAJVUP010000390          553 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.399, whole genome shotgun sequence.
ACCESSION   DAJVUP010000390 DAJVUP010000000
VERSION     DAJVUP010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.399"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(286..471)
                     /locus_tag="OQQ75_004403"
     CDS             complement(286..471)
                     /locus_tag="OQQ75_004403"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978478.1"
                     /translation="MIMVAVAAAVTDALLVFFRQLAPFVVLPALGIFIIHGTVRQAVG
                     FIVMPERDQALMSLTVI"
     gene            470..>553
                     /locus_tag="OQQ75_004404"
     CDS             470..>553
                     /locus_tag="OQQ75_004404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000977355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Rhs"
                     /protein_id="HCS1978479.1"
                     /translation="MMKNQMEPEYTPLRKIHLYHCDHRGLPL"
BASE COUNT          176 a          120 c          134 g          123 t
ORIGIN      
        1 cctgttagga atggtatccc cagcactaca tggatagcaa aaaatcttga ttgctttagt
       61 cgtaataaaa gggtggctat ttcttttaca ttccaatatt tatgtaatga atataatgat
      121 ccaaatactg aaaaggcgtt aaatatatat tggggacagt atctgaatga atcattgctt
      181 attaaaaatg tacagaactc taaaaataaa tgtaaatcac agtaagacag aaccaagcag
      241 aaatcgtggg cgtggttcgc accctgacgg agggtgtagc gtgtactaga tcacagtgag
      301 cgacatcaaa gcttggtcac gttctggcat tacgatgaag ccgaccgcct gacgcaccgt
      361 accgtgaatg atgaagatgc cgagtgctgg cagtacaacg aacggggcta gctgacggaa
      421 aaagacgagc agcgcatccg tgacggcggc agccacagcc accattatca tgatgaaaaa
      481 ccagatggag ccggaataca cgccgctgcg taaaattcac ctgtaccact gcgaccaccg
      541 gggactgccg ctg
//
LOCUS       DAJVUP010000391          549 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.400, whole genome shotgun sequence.
ACCESSION   DAJVUP010000391 DAJVUP010000000
VERSION     DAJVUP010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.400"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..496)
                     /locus_tag="OQQ75_004405"
     CDS             complement(<1..496)
                     /locus_tag="OQQ75_004405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011379138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978480.1"
                     /translation="MLFTGIWPQRAFIHWRIQLAKSLTEYNRVYQSAFSPNLLERPRL
                     ESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQTINRNLVCMLELQINAYWATRP
                     SHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLNNH
                     HDLKV"
BASE COUNT          132 a          132 c          141 g          144 t
ORIGIN      
        1 caaccttcag gtcatggtgg ttattgagca actgacgcag ctcttccact gcatcgttca
       61 atttttccgt attggcaaaa accggctgcg gattaccttc gtacaacgca tgaacaaggc
      121 tcagcagtat ttgctgcatc atgtgctggg tatcacgaag tttttgcgcg ttcaataaca
      181 cgaaatggct ggggcgcgtg gcccagtacg cattgatttg caactccagc atacaaacca
      241 gattgcggtt aatggtctgg ataccttcat atatcgattt tggaatacgg gtttctttgc
      301 tggcgggcgc aatcagccca cgcattttca cggcatcggt caggagtttt tgtagatggc
      361 tttccagacg tgggcgttcg agtaagttcg gtgagaatgc agattgatag acccgattat
      421 actcggtcag acttttcgcc agttgaatgc gccagtggat gaacgcccgt tgtggccaga
      481 taccggtaaa caacattgcc agtaaagagc cgaggagcac atcgccgctt cgccataacg
      541 ccgtatcaa
//
LOCUS       DAJVUP010000392          548 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.402, whole genome shotgun sequence.
ACCESSION   DAJVUP010000392 DAJVUP010000000
VERSION     DAJVUP010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.402"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>548
                     /locus_tag="OQQ75_004406"
     CDS             <1..>548
                     /locus_tag="OQQ75_004406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1978481.1"
                     /translation="EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDD
                     DLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKL
                     AAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVA
                     LEVEQRVLAHPLYPVLTSMPGV"
BASE COUNT          118 a          181 c          142 g          107 t
ORIGIN      
        1 tgaagctaaa actgatgctc gtgacgctgc catcattgcc gaagctgccc gtaccctgcc
       61 tcacgcgcta cgcacgctga aactggctga cgagcaaatc gccgaactct ccatgctctg
      121 cggcttcgat gatgatcttg ccgcacagac aacgcaggcc agcaaccgta tccgcggcct
      181 tctgacccag atacatccgg cactggagcg cgttctcggt ccgagacttg agcacccggc
      241 ggtactcgat cttctccagc gatatccctc accagaaaaa ctcgcttcgc tgggtgagaa
      301 gaagctggca gcccagctct gcaaacttgc gcctcgtctg ggtaaacgcc ttgcagcaga
      361 catagctcag gcactggccg aacaaaccgt cgtcgttccc ggcacgaatg ccgctgccgt
      421 agtactgcca cgtctggcac tccagctcat cacgctgcgt aagcaaagag acgaggtggc
      481 gcttgaggta gaacagcgag ttcttgctca ccctctttac ccggtcctga ccagtatgcc
      541 cggagtcg
//
LOCUS       DAJVUP010000393          530 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.403, whole genome shotgun sequence.
ACCESSION   DAJVUP010000393 DAJVUP010000000
VERSION     DAJVUP010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.403"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(330..>530)
                     /locus_tag="OQQ75_004407"
     CDS             complement(330..>530)
                     /locus_tag="OQQ75_004407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin"
                     /protein_id="HCS1978482.1"
                     /translation="ALGGKLKVTQLSSTGYLGQFDFCAIARMGNAEDSHYCQVVESPS
                     GSRKWYKYEHKTGCIASCVTLN"
BASE COUNT          136 a          124 c          122 g          148 t
ORIGIN      
        1 acttccggtt cctctaacgg tagttacagt aatcttggat cacacagagg atcatttact
       61 ggtcgcaata cgggaagtgg tacgctgttt gtttacgcct ctggagggaa tggtggttcc
      121 gccgggggag attgtgctaa cacatccaga ttgcagggat acgttgcagg ggcattgatt
      181 agcacaaatg cgagtaataa cccatcttat gggaagacag cattcatctc ttttgctgtc
      241 cctgctggcg caacttatca gatcacctct tatccggccc aaaactactc ttgtggctca
      301 ggggtatttt cagtatttgg ataccaaact taattgagag ttacacagga cgcaatacaa
      361 cctgtcttgt gctcgtattt gtaccatttt cgtgaaccag atggactctc gactacctgg
      421 cagtaatgag aatcctcagc atttcccatt ctggcaatgg cacaaaagtc aaattgcccc
      481 aagtaaccag tgctggaaag ttgagtaacc ttgagctttc cacctaatgc
//
LOCUS       DAJVUP010000394          523 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.404, whole genome shotgun sequence.
ACCESSION   DAJVUP010000394 DAJVUP010000000
VERSION     DAJVUP010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.404"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(86..493)
                     /locus_tag="OQQ75_004408"
     CDS             complement(86..493)
                     /locus_tag="OQQ75_004408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1978483.1"
                     /translation="MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQ
                     PAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPES
                     EQKALLSEMRARVENFNKLFEELLKARKRSANK"
BASE COUNT          126 a          102 c          117 g          178 t
ORIGIN      
        1 aaaaacctaa gttttttttg atgtaaaaaa cacaagtgtt tgaaagtttg tgctttttat
       61 tacagggtgt ggagaaaaaa ggggattatt tgtttgcgct tcttttgcga gctttgagta
      121 gttcttcaaa aagtttgttg aaattttcaa ctcgagcacg catctctgac aacagggcct
      181 tttgctctga ctcaggcagt gcgtcgaaca gttgaagtaa ctctttttga tcttctgtca
      241 gaatggctgg ctgattatcc gggatcggtt cgcctggttg tttatcttca tccccaaaaa
      301 gaagccaagt cggtgagcac tgaagcgctt ggctcagtgc gaataatctt ttccccgccg
      361 gctgtgtttc atctctttcc cattgagaaa ttgttacgtg agccactttg accagcttac
      421 ctaatgcggc ctgagacagt tttaattttt tacgcctatg taagaggcga gcaccgaagg
      481 tttcgttttt catattaggg aattctaatc tttcttgact tag
//
LOCUS       DAJVUP010000395          519 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.405, whole genome shotgun sequence.
ACCESSION   DAJVUP010000395 DAJVUP010000000
VERSION     DAJVUP010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.405"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..387
                     /locus_tag="OQQ75_004409"
     CDS             <1..387
                     /locus_tag="OQQ75_004409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunoglobulin domain-containing protein"
                     /protein_id="HCS1978484.1"
                     /translation="FLAEVRQHTWSSGTNGVVAATFSLRLKGKPVSFVVPLAFVKNLD
                     KTLTVNTGALLTMSVSANGGMPPYKYAWKKDGQPVDGQTTDTFSKPGAQSADAGKYTC
                     VVTDSAEKAQSVTSVECTVTVSAAAG"
     gene            402..>519
                     /locus_tag="OQQ75_004410"
     CDS             402..>519
                     /locus_tag="OQQ75_004410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978485.1"
                     /translation="MKKDLKTLALARLSGFRHKTVKVPEWGNVSVVLREPSAE"
BASE COUNT          123 a          118 c          174 g          104 t
ORIGIN      
        1 ttcctggcgg aagtgcgtca gcacacctgg tcatccggta ccaacggtgt ggtggctgca
       61 acgttctcac tgcgtctgaa aggcaaaccg gtgtcctttg tggtaccgct ggcgtttgtg
      121 aaaaatctgg ataagacact taccgtgaat accggtgcgc tgctgacaat gtcagtcagt
      181 gccaacgggg gaatgccgcc gtataaatac gcctggaaga aggatggtca gccggttgac
      241 gggcagacga cagacacctt cagtaagcca ggtgcgcagt ccgctgatgc ggggaaatat
      301 acctgcgtgg tgaccgattc ggcagagaaa gcacagagtg tgacgtctgt tgaatgcacc
      361 gtgacagtga gcgcagctgc cggataaggg gatgggtcat catgaaaaag gatctgaaaa
      421 cgctggcgct ggccagactg tcagggtttc gtcataaaac ggtgaaggtg ccggaatggg
      481 ggaatgtcag cgtggtgctg cgggagcctt cggcagagg
//
LOCUS       DAJVUP010000396          515 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.406, whole genome shotgun sequence.
ACCESSION   DAJVUP010000396 DAJVUP010000000
VERSION     DAJVUP010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.406"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            235..515
                     /locus_tag="OQQ75_004411"
                     /pseudo
     CDS             235..515
                     /locus_tag="OQQ75_004411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001179707.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          132 a          136 c          126 g          121 t
ORIGIN      
        1 tccccgccag cccggctaag atggaggcac ggcacagccc gcacacgacg ctgaggctac
       61 agagctgaaa acccacaagg ccatgccccg catggccggg taaagcggag ccggcggcga
      121 cttcctttgt gctctgtccg ggaccggcag gaaaaaggcg gggataatga gatggtcacc
      181 cccaccctaa cagcagtacg ctgttaaggt gaatccctta acggagagac catcatacag
      241 aacatcacac ttattggtat cgatctcgga aagcattcct tccacattca ttgtcaagac
      301 aagtctggta aggctcttct gcgtaaaaaa tttacccagt actaaactga tgcagtttct
      361 ggcaacatgt ccgccctcag ttgttgtaat ggaagcctgt gcgggtgcac actttttggc
      421 tcgccgtatc tctgaatttt ggacatgaaa ctaagctgat ttctccacag ttcgttcgcc
      481 cgtttgtcaa aagtaataag aatgattttg ttgat
//
LOCUS       DAJVUP010000397          514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.407, whole genome shotgun sequence.
ACCESSION   DAJVUP010000397 DAJVUP010000000
VERSION     DAJVUP010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.407"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..279
                     /locus_tag="OQQ75_004412"
     CDS             <1..279
                     /locus_tag="OQQ75_004412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
                     /protein_id="HCS1978486.1"
                     /translation="SLNVYCRNGQVEIDNNIGENALRSVAVGRKNYLFFGSDNGGESA
                     AIIYSLLVTCKLNGVEPEDWLREVIVKLNDWPSNRVHELLPWNFSAVK"
BASE COUNT          125 a          115 c          139 g          135 t
ORIGIN      
        1 agcctgaacg tgtactgtcg taatggccag gtggaaatcg acaacaacat cggtgaaaac
       61 gcgctgcgat cggtggcggt tggaagaaaa aattatctct tcttcggttc tgacaacggt
      121 ggagaaagcg cggcgattat ctacagtctg ctggtcacct gcaaactgaa cggagtggag
      181 ccggaggact ggttgcgcga agtgatcgtg aagctcaatg actggccgtc gaaccgagtg
      241 catgaactgc tgccctggaa cttctcagct gtaaaataat ccttccgcta cgtacttctc
      301 tgggcgctta ccactcaacg gcatcgtcaa aattatcaaa gcgcagaaca tagatttatc
      361 atgtgtttta tggatggctt tctccatcag gcatcgttcg tcacgggaaa ttggtgctat
      421 gatcggcatt gatcagtccg gttggtgatt tgttttgatt tggcgattga tcagatcgca
      481 caatccgggc tgagttccct ctaagtgatc tagg
//
LOCUS       DAJVUP010000398          509 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.408, whole genome shotgun sequence.
ACCESSION   DAJVUP010000398 DAJVUP010000000
VERSION     DAJVUP010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.408"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>509
                     /locus_tag="OQQ75_004413"
     CDS             <1..>509
                     /locus_tag="OQQ75_004413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS1978487.1"
                     /translation="QMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES
                     GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARK
                     ARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE
                     NALRGVAVGR"
BASE COUNT          137 a          135 c          151 g           86 t
ORIGIN      
        1 cagatgcccc cggcggtctg gttcgcgtac agcccggacc ggaaaggtat ccatccacag
       61 aatcacctgg ctggttacag cggtgtgctt caggcagatg cttacggtgg ttaccgggcg
      121 ttatacgaat ccggcagaat aacggaagcc gcgtgtatgg cccatgcccg gagaaaaatc
      181 cacgatgtgc atgcaagagt gccaaccgac atcaccacgg aagccctgca gcgtatcggt
      241 gaactgtata ccatcgaggc agaagtccgg ggatgttcag cagaacagcg tctggcggca
      301 agaaaagcaa gagccgcgcc actgatgcag tcactgtatg accggataca gcaacagatg
      361 aaaacactgt cgcgtcactc ggatacggca aaagcgttcg catacctact gaaacagtgg
      421 aaggccctga acgtgtactg cagtaatggc tgggtggaaa tcgacaacaa catcgcagag
      481 aacgccttac ggggagtggc cgtaggccg
//
LOCUS       DAJVUP010000399          507 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.409, whole genome shotgun sequence.
ACCESSION   DAJVUP010000399 DAJVUP010000000
VERSION     DAJVUP010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.409"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>507)
                     /locus_tag="OQQ75_004414"
     CDS             complement(<1..>507)
                     /locus_tag="OQQ75_004414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1978488.1"
                     /translation="AFLTGIAGALQTPTLSIFLADELKARPIMVGFFFTGSAIMGILV
                     SQFLARHSDKQGDRKLLILLCCLFGVLACTLFAWNLNYFILLSTGVLLSSFASTANPQ
                     MFALAREHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAIAF
                     VVCGLIVW"
BASE COUNT          157 a          121 c          129 g          100 t
ORIGIN      
        1 aaccagacta tcagcccgca aacaacaaat gcgatggcag cggtgagata catcacttta
       61 aaactaaacc ccattgccag ttcataagcg agcggtggcc cgataaccca ggcaagcgag
      121 atctgagcac gtaaaaatgt actgaacatg accgtctcac ggcctgttct gtcggcgtgt
      181 tcacgggcga gggcgaacat ttgcgggttt gcggtagaag caaaactact cagaagtacg
      241 cccgtagaga ggagaatgaa gtagttgaga ttccacgcaa aaagcgtgca ggccagcact
      301 ccaaataagc aacatagcag aatcagtaat ttacggtcgc cttgtttatc ggagtgcctt
      361 gccagaaatt gactgaccag aattcccata atagcgctac cggtgaagaa aaaacctacc
      421 attataggac gggctttcag ttcatctgcg aggaatatac ttagggtagg agtctgaaga
      481 gcgcccgcaa tacccgtcag aaaggcg
//
LOCUS       DAJVUP010000400          504 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.410, whole genome shotgun sequence.
ACCESSION   DAJVUP010000400 DAJVUP010000000
VERSION     DAJVUP010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.410"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..142
                     /locus_tag="OQQ75_004415"
     CDS             <1..142
                     /locus_tag="OQQ75_004415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="activator of the allDC-ylbA operon involved in
                     allantoin utilization; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HCS1978489.1"
                     /translation="MRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFLEIFGNP
                     RS"
     gene            211..>504
                     /locus_tag="OQQ75_004416"
     CDS             211..>504
                     /locus_tag="OQQ75_004416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308591.1"
                     /note="catalyzes the selenophosphate-dependent transfer of
                     selenium from selenophosphate for conversion of
                     2-thiouridine to 2-selenouridine at the wobble position in
                     tRNA; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HCS1978490.1"
                     /translation="MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMN
                     NDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRIDAWRAACLQNPQGILCCA"
BASE COUNT          120 a          130 c          140 g          114 t
ORIGIN      
        1 gatgcgccct ccttcgccat tgagtctggc atggcgcaaa tttggcagcg gcaaagcggt
       61 agaagatatt gtgaccttgt ttacccagcg caggccggaa atcagcggat ttttagaaat
      121 tttcggcaac ccacgcagtt aaaaatcaag tttccttgcg cgttggcgcg taaaatagcg
      181 cgcaagctga tttgaggttc acttttaact atgcaagaga gacacacgga acaggactat
      241 cgtgccctgc tgattgctga tacgcccatt attgatgttc gcgcccctat cgagtttgag
      301 caaggcgcaa tgcccgccgc tatcaatctg ccgttaatga ataacgatga acgcgccgcc
      361 gttggcacct gctataaaca gcaagggtca gacgcggcgc tggcgctggg gcataaactg
      421 gtggcgggtg aaattcgtca gcagcgcata gacgcctggc gggcagcgtg cctgcaaaat
      481 ccgcaaggta ttctctgctg tgcc
//
LOCUS       DAJVUP010000401          488 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.411, whole genome shotgun sequence.
ACCESSION   DAJVUP010000401 DAJVUP010000000
VERSION     DAJVUP010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.411"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>488
                     /locus_tag="OQQ75_004417"
     CDS             <1..>488
                     /locus_tag="OQQ75_004417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000556401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1978491.1"
                     /translation="AMNSDGHLTINGNGDVDNGTELDNSSVDNVVAATGNYKVRIDNA
                     TGAGTIADYKDKELIRVNDANTNATFSAANKADLGAYTYQAEQRGNTVVLQQMELTDY
                     ANMALSIPSANTNIWNLEQDTVGTRLTNSRHGLADNGGAWVSYFGGNFNGDNGTINYD
                     QD"
BASE COUNT          135 a          129 c          117 g          107 t
ORIGIN      
        1 ttgctatgaa ctctgatggt cacctgacta tcaatggtaa cggcgacgta gacaacggta
       61 ctgaactgga taacagctct gttgataacg ttgttgctgc aaccggtaac tacaaagttc
      121 gtatcgacaa cgcaactggc gctggcacta tcgctgatta caaagataaa gaacttattc
      181 gggtaaacga cgctaacacc aacgcgacct tctctgctgc taacaaagct gacctgggtg
      241 catacaccta tcaggctgaa cagcgcggta acaccgttgt tctgcaacag atggagctga
      301 ccgactacgc taacatggcg ctgagcatcc cgtctgcgaa caccaatatc tggaacctgg
      361 aacaagacac cgttggtact cgtctgacca actctcgtca tggcctggct gataacggcg
      421 gcgcatgggt aagctacttc ggtggtaact tcaacggcga caacggcacc atcaactatg
      481 atcaggat
//
LOCUS       DAJVUP010000402          477 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.413, whole genome shotgun sequence.
ACCESSION   DAJVUP010000402 DAJVUP010000000
VERSION     DAJVUP010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.413"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            35..477
                     /locus_tag="OQQ75_004418"
                     /pseudo
     CDS             35..477
                     /locus_tag="OQQ75_004418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          106 a          125 c          129 g          117 t
ORIGIN      
        1 atttagtgta tgatggtgat tttaaggtgc ttgcgtggct tccatttcca tcagatgtcc
       61 ttcctgctcc gctactgaag gcgtggtgcg taacggcaaa agcactgccg gacatcagcg
      121 ctatctctgc tctcattgcc gtaaaacatg gcaactacag ttcacttaca ccgcctctca
      181 gcccggtacg caccagaaaa tcattgatat ggccatgaat ggcgtcggat gtcgcgccag
      241 tgcacgcatt atgggcgttg gcctcaacac ggttttacgt cacttaaaaa actcaggccg
      301 cagtcggtaa cctcgcgcat acaaccgggc agtgatgtga ttgtctgcgc tgaaatggac
      361 gaacagtggg gctacgtcgg tgctaaatca cgtcagcgct ggctgtttta cgcgtatgac
      421 aggatacgga ggacggttgt ggcgcacgtc ttcggtgaac gcactctggc cacactg
//
LOCUS       DAJVUP010000403          476 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.414, whole genome shotgun sequence.
ACCESSION   DAJVUP010000403 DAJVUP010000000
VERSION     DAJVUP010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.414"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..334)
                     /locus_tag="OQQ75_004419"
     CDS             complement(<1..334)
                     /locus_tag="OQQ75_004419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707670.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HCS1978492.1"
                     /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLTALALSLFTGL
                     LLVLVAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY
                     LPFLFLPES"
BASE COUNT          147 a          103 c          111 g          115 t
ORIGIN      
        1 tactttccgg taaaaataaa aacggtaaat agagcgcaat atcggaaata acatcgccag
       61 tttcattcaa aatcgccccc agacgtgttt gctgattgca ctcacgcgcc aacatgccat
      121 ccagcgcatt gagcgccata cggataaaaa gcacgatggg caatagcaaa aagaggatgg
      181 gttgtgccac caacaccaac agcaatccgg taaaaagaga aagcgccagt gccgtaagag
      241 tgatgtgatt cgctgtaacg tggtgcttat aaagccaaaa catcgtcggc cttaacagcg
      301 actgaaagag cggttttatc tggtagagcg tcatttatca ttccgtgata ttcagtttgc
      361 tctatggtgc atcaattgtg atggcggaga tatcacaacg cggagcatca acgtaaattc
      421 ggaatatatc aagatgtggt ggatggtttt cctacacatc tgtttgatta ccgact
//
LOCUS       DAJVUP010000404          467 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.415, whole genome shotgun sequence.
ACCESSION   DAJVUP010000404 DAJVUP010000000
VERSION     DAJVUP010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.415"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
BASE COUNT          124 a          109 c           92 g          142 t
ORIGIN      
        1 ggctggattt gccagcaggg tgagaaactg tatgcgatac aaccagaaga aacgctaacg
       61 ctggacgtta aaacgcaacg tttcaaccgt cagggttaag ccactgttcg gatggcatcg
      121 ttctgatgtc atccggcaat ttactcagca ctaatggttt ttaactacct gttatatttt
      181 tcaccaattt atgatgattt ttcttcgcta atcacgaacc caacgccgct ggctggctaa
      241 taaacagacg ttatttgatc actctatttc gccgttattt atccctttaa ttcccttttc
      301 taaaatgcct gacagttcgc agaatgagat ttcgatcatg cagctagtgc gatcctgaac
      361 taaggttttc tgatacttga ataccgtttt attcggtttc gccaaaggag aatgattgat
      421 gaaatccccc gcaccttctc gcccgcaaaa aatggcgtta attccag
//
LOCUS       DAJVUP010000405          466 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.416, whole genome shotgun sequence.
ACCESSION   DAJVUP010000405 DAJVUP010000000
VERSION     DAJVUP010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.416"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            107..466
                     /locus_tag="OQQ75_004420"
                     /pseudo
     CDS             107..466
                     /locus_tag="OQQ75_004420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          121 a          115 c          110 g          120 t
ORIGIN      
        1 tttaacgtaa ggtgagagga tttttaagtg tatccataga ttaaaaatga caatgcctcc
       61 aattagttga attaggggtt ataatacccg cttttaaggt tctttcatgg tcacagttaa
      121 ctttcattgc ccccgttgcc agtccgttca ggtttaccgt cacgggcaga acccaaaagg
      181 acatgatcga ttccgttgcc gtgactgtca ccgggtgttt cagctcactt actgttacga
      241 ggcccgtaaa ccgggagtta aaaaccaaat cactgaaatg gcttcaacgg tgccggagtt
      301 cgcgatactg cccgtacgct gaaaatcggc atcaataccg tcatacggac attaaaaagc
      361 tcccgccccg gcggataaca tctgcgccag tcgctcacgc tgatgttgcc cttatctgtg
      421 aacttgatgg gcagtggagc ttcgttggca gcaaggcgca acaaca
//
LOCUS       DAJVUP010000406          464 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.417, whole genome shotgun sequence.
ACCESSION   DAJVUP010000406 DAJVUP010000000
VERSION     DAJVUP010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.417"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..254
                     /gene="tnpA"
                     /locus_tag="OQQ75_004421"
     CDS             <1..254
                     /gene="tnpA"
                     /locus_tag="OQQ75_004421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000604943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HCS1978493.1"
                     /translation="DATEKLRTYFSNVCADFEAELVEMDGEPDHVHLLINYPPKLAIS
                     SLVNSLKGVLWSPGYFASSCGGAPISVIRQYIEQQQTPG"
BASE COUNT          135 a          117 c           93 g          119 t
ORIGIN      
        1 atgacgcgac agaaaaacta cgcacttact tttcaaatgt atgtgctgat tttgaagctg
       61 aactggttga aatggatggc gaaccagatc acgtccattt gttaattaac tatcctccca
      121 aactggcaat atccagtctg gtaaacagcc tcaaaggcgt tttgtggagt cctggctatt
      181 ttgccagtag ctgcggaggt gcgccaatat ccgtcatccg ccaatacatt gaacaacagc
      241 aaacacctgg ttaggtggaa aaccacgcct tatatccctg ccctgaagga cggggtttta
      301 cggcgcaccg gataagcctg gagattatct acaccagcat ggacatcatt gtactatgcc
      361 ccgtacatgc cccatcacat cctcaacatc aaagtattag agccttgcaa accattatgc
      421 gtctcagttt gtctcatcta tcttacgcaa aaaaaaatag aact
//
LOCUS       DAJVUP010000407          463 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.418, whole genome shotgun sequence.
ACCESSION   DAJVUP010000407 DAJVUP010000000
VERSION     DAJVUP010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.418"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            227..463
                     /locus_tag="OQQ75_004422"
                     /pseudo
     CDS             227..463
                     /locus_tag="OQQ75_004422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611434.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          131 a          114 c          118 g          100 t
ORIGIN      
        1 gcgatctggt tcaacaatat gcagatggta cacaacctct ttaaccagcc catccggatt
       61 attcagagcc cttccgcaat ccggaataaa agtgctgttt taccgtgaac cctctgaaaa
      121 tcagcgagca gtgttttaac cagccgacgt tcagagcgta ctgacagacg gtggacaatt
      181 tgaataaaca gttcaatcag accgtagatg ctctcccgtt ggcgacatgc tgggagcggt
      241 ggaacaccgc ttcggcaacg agcttccggc gtctccagtg aagtgactga cggataatgg
      301 ttcatgctac cgggctaatg aaacacgcca gttcacccgg atgttgggac tttgttgaac
      361 cgaagaacac ggcggtgcgg agtccggaga gtaacagaat agcaaagagc ttcgtgaaaa
      421 caataaagtg tgactacatc agtatcatgc ccaaacctga cgg
//
LOCUS       DAJVUP010000408          451 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.419, whole genome shotgun sequence.
ACCESSION   DAJVUP010000408 DAJVUP010000000
VERSION     DAJVUP010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.419"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
BASE COUNT          178 a           76 c           80 g          117 t
ORIGIN      
        1 actctatcat cgccaatcat cagacattga aatagacgac actgagatga cgcttacaat
       61 tcttttggtt tctgtaataa gtaatctgac atcccccgtg cccagaagag gagagggata
      121 tcaagcccaa gggttaataa ttgatactac ggttaaaatt gccttcagta aaggaaacgt
      181 gattaaattc aggggatttc agagtgaaaa ccatacaaca tattaaaatc tgttcattta
      241 gctataatac atacaagaaa gtgtccagtt agataatgtt atctaaataa ccacagataa
      301 aaacgcacat aattgggggg gggatgaaaa tacctgaagc agtaaatcat attaatgttc
      361 agaataatat tgatcttgtt gatggaaaaa cgaatccgaa taaagcaaca aaagcattac
      421 aaaaaaatat attacgcgta acaaactcat c
//
LOCUS       DAJVUP010000409          450 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.420, whole genome shotgun sequence.
ACCESSION   DAJVUP010000409 DAJVUP010000000
VERSION     DAJVUP010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.420"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>450)
                     /locus_tag="OQQ75_004423"
     CDS             complement(<1..>450)
                     /locus_tag="OQQ75_004423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004141771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HCS1978494.1"
                     /translation="LSVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYD
                     ANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLY
                     ARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITD"
BASE COUNT          129 a           99 c           84 g          138 t
ORIGIN      
        1 atcggtaatc gctgcatcgt ctttatccag caggttaaat ttgtatgctg tgtagacgtt
       61 catgttctta ttgaagtagt accaggtacc aacttcgata taatttacgc ggtcagcatc
      121 aacaccttta tgtccatcac gagcataaag atctttgcct ttggaatata cgtagcctaa
      181 agacggacgt aaaccgaagt cgaactgata ctgtacaaca gcttcaaagt tttgggtttt
      241 atttgcaaaa tgatcattag ccaaaacggt catgttgcgg gtttcaccgt acatcattgc
      301 tgcatagata ttatttgcat catacttggc tgctaatgac cacacttcag cgttatcacc
      361 gtagccgtca ccagcttgtt cattagtacg atcagatttg ctatatgcac ctacaaaacc
      421 aaaaccttcg atgttgtagt ctacagacaa
//
LOCUS       DAJVUP010000410          449 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.421, whole genome shotgun sequence.
ACCESSION   DAJVUP010000410 DAJVUP010000000
VERSION     DAJVUP010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.421"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..412)
                     /locus_tag="OQQ75_004424"
     CDS             complement(<1..412)
                     /locus_tag="OQQ75_004424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HCS1978495.1"
                     /translation="MLNVAIENQNGWNYSAPAPHKTGAGISTPKVTRAHNRAEAVFLC
                     VMHSHIQIMVRRAGQPQGWPGSRVTGSANPVRLTTHEISTSAGELINLSLEDVIMATT
                     LSHPDVTIENGRAVTTSISIAEFFGKQHHHVVQKI"
BASE COUNT          116 a          108 c          105 g          120 t
ORIGIN      
        1 ctattttttg aacaacatgg tgatgctgct tgccaaaaaa ctcagcaatc gaaatagaag
       61 tagtgacggc gcgaccattt tcgatggtta cgtcagggtg agaaagggta gtagccataa
      121 tgacatcctc aagtgataag ttaattaact caccagcaga ggtgctaatc tcatgggtgg
      181 tgagacgcac agggttagca ctaccggtca ctcgagaacc cggccagcct tgcggctgcc
      241 ccgcacgcct caccataatt tgaatgtggc tgtgcattac gcataaaaaa accgcttcag
      301 cgcggttatg cgctcgagta actttcgggg tgctaatccc ggcacccgtt ttatgaggtg
      361 caggtgcact ataattccac ccgttctggt tttcaatagc tacattcaac attttctctt
      421 tcctttcatc accgaagtga attttgtga
//
LOCUS       DAJVUP010000411          447 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.422, whole genome shotgun sequence.
ACCESSION   DAJVUP010000411 DAJVUP010000000
VERSION     DAJVUP010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.422"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..182)
                     /locus_tag="OQQ75_004425"
     CDS             complement(<1..182)
                     /locus_tag="OQQ75_004425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HCS1978496.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVVRTPEGERYIPCVNISAEPE
                     AYFRIAPEDWLRAEMQG"
     gene            complement(187..>447)
                     /locus_tag="OQQ75_004426"
     CDS             complement(187..>447)
                     /locus_tag="OQQ75_004426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1978497.1"
                     /translation="SASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVA
                     DEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ"
BASE COUNT          100 a          144 c          105 g           98 t
ORIGIN      
        1 ccctgcatct ctgcccgcag ccagtcttcc ggtgcgatac gaaaatacgc ctccggctct
       61 gcagaaatat tcacacaagg gatataccgc tccccctccg gcgttctcac cacgaagcca
      121 cacgactccg ctggcgcaca tcgccgggcg tgcgccagaa tcgctgattc tgtctgtgtc
      181 atggatttac tgagaaagtt tattgatgga aaggaaaccg ccgaaattac cggtattgtt
      241 gcgcaactca cacccgcgca tacacttgct gcatttgtcc ttccggatat ccgtcgttgg
      301 tttgtcgaac tcgtcagcca ctgccctgcc cgtgtaacca cactcatcag aacggtaggt
      361 ccacatacag gtattcgcca gcatgatacg ccccgggaaa accgcgccat ccgtctccgt
      421 tggtgtggcc agcacaaaag aggcact
//
LOCUS       DAJVUP010000412          447 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.423, whole genome shotgun sequence.
ACCESSION   DAJVUP010000412 DAJVUP010000000
VERSION     DAJVUP010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.423"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..182)
                     /locus_tag="OQQ75_004427"
     CDS             complement(<1..182)
                     /locus_tag="OQQ75_004427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HCS1978498.1"
                     /translation="MTETESAILAHARRCAPAESCGFVVRAPEGERYFPCVNISGEPE
                     DYFRMAPEDWLQAEMQG"
     gene            complement(187..>447)
                     /locus_tag="OQQ75_004428"
     CDS             complement(187..>447)
                     /locus_tag="OQQ75_004428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1978499.1"
                     /translation="SASFVLSTPTETDGAVFPGRIMLANTCTWTYRGDECGYHGPAVA
                     DEYDQPTSDITKDKCSKCLSGCKFRNNVGNFGGFLSINKLSQ"
BASE COUNT           98 a          138 c          114 g           97 t
ORIGIN      
        1 ccctgcatct ctgcctgcag ccagtcctcc ggagccatcc ggaaataatc ctccggctca
       61 ccggaaatat tcacgcaggg aaaatatctt tccccctccg gcgctctcac cacgaagccg
      121 cacgactccg ctggcgcaca tcgccgggcg tgcgccagaa tcgctgattc tgtctctgtc
      181 atgggattac tgcgaaagtt tgttaatgga aaggaagccg ccaaagttgc cgacgttatt
      241 gcgaaactta cagccgctca ggcatttgct gcatttatcc ttcgtgatat cggacgtcgg
      301 ctggtcatat tcatccgcga ctgccggacc gtgataaccg cactcatcac cgcgataggt
      361 ccaggtgcag gtgttggcca gcatgatacg tcccggaaaa acagcgccat ccgtttccgt
      421 cggcgtggac agtacaaagg aggcact
//
LOCUS       DAJVUP010000413          432 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.424, whole genome shotgun sequence.
ACCESSION   DAJVUP010000413 DAJVUP010000000
VERSION     DAJVUP010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.424"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            42..395
                     /locus_tag="OQQ75_004429"
     CDS             42..395
                     /locus_tag="OQQ75_004429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HCS1978500.1"
                     /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS
                     DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD
                     GKRMIYGGFESIIDE"
BASE COUNT          103 a           86 c          137 g          106 t
ORIGIN      
        1 agaattgtct ggctgcgcag tacgcttcgg aggtatgtct gatgaagtat gttgatggtt
       61 ttgtggttgc cgttcctgcc gataaaaagg atgcctatcg ggaaatggcc gctaaggctg
      121 cgccattgtt taaagagttt ggcgcgcttc gtattgtcga atgctgggcc agcgatgtac
      181 cggatggcaa agtgaccgat tttcgtatgg cggtgaaagc ggaagagaat gaagaggttg
      241 tctttagctg gattgaatac ccttcaaaag aggtccgcga cgctgctaat caaaagatga
      301 tgtcggaccc acggatgaaa gagttcggcg agtccatgcc gtttgacggc aagcgaatga
      361 tctatggcgg attcgagtca atcatcgacg aataggtagc gtgacgggct gtgcggcgtg
      421 ccgtcagccc aa
//
LOCUS       DAJVUP010000414          432 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.425, whole genome shotgun sequence.
ACCESSION   DAJVUP010000414 DAJVUP010000000
VERSION     DAJVUP010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.425"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..365)
                     /locus_tag="OQQ75_004430"
     CDS             complement(<1..365)
                     /locus_tag="OQQ75_004430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS1978501.1"
                     /translation="MFFNTKHTTALCFVTCMAFSSSSIADIVISGTRVIYKSDQKSVN
                     VRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTATPPVSRIDAKRGQTIKLMYTAST
                     SLPKDRESVFWFNVLEVPP"
BASE COUNT          131 a           87 c           89 g          125 t
ORIGIN      
        1 tttggtggaa cttccagtac gttaaaccag aacacgctct ctctgtcttt aggcagtgag
       61 gtgctggctg tgtacattaa tttgattgtt tgcccacgtt tggcatcaat acgcgatact
      121 ggcggcgtgg cagtaaaagg gactgtaata ctgccaggct cagcgttgtc atcgccagta
      181 tctaaccaac tctggacaag caacgggtta ttccctttat tttccagacg tacgttgaca
      241 cttttttgat cgcttttata tattacgcga gtacccgaaa tgacaatgtc cgcaatagac
      301 gatgaactaa aagccataca ggttacgaag cataaagctg ttgtatgttt ggtgttaaaa
      361 aacataaacc atccctgaca gagttaatta aaacagggaa taatataaaa atagaaatta
      421 ttaacactat tc
//
LOCUS       DAJVUP010000415          417 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.426, whole genome shotgun sequence.
ACCESSION   DAJVUP010000415 DAJVUP010000000
VERSION     DAJVUP010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.426"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..362
                     /gene="cybB"
                     /locus_tag="OQQ75_004431"
     CDS             <1..362
                     /gene="cybB"
                     /locus_tag="OQQ75_004431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415935.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome b561"
                     /protein_id="HCS1978502.1"
                     /translation="VRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIG
                     LVMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHH
                     YFWKDNTLLRMMPRKRS"
BASE COUNT          101 a           93 c          109 g          114 t
ORIGIN      
        1 tcgttcgtct tttgttaagg ctgaaatacc caaccccgcc gattatacct aagccaaaac
       61 cgatgatgac gggactggcg catttgggac atttggtgat ttatctcctg tttattgcgc
      121 tgccagtgat tggtttggtg atgatgtata accggggcaa cccgtggttt gcgtttggtt
      181 tgacgatgcc ttacgcttca gaggccaatt tcgaacgggt tgatagctta aagtcgtggc
      241 atgaaacgct ggcgaatctg ggatattttg tcatcgggtt gcacgctgcg gctgcactgg
      301 cacaccacta tttctggaag gacaacacac ttctacgtat gatgccgcgt aaacgttcct
      361 gaaggatatt taaagaaaac gcctgtacta aaaccgaccc gtggtacagg cgaagaa
//
LOCUS       DAJVUP010000416          409 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.427, whole genome shotgun sequence.
ACCESSION   DAJVUP010000416 DAJVUP010000000
VERSION     DAJVUP010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.427"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
BASE COUNT          144 a          104 c           53 g          108 t
ORIGIN      
        1 cctgcaaacc gtttttgtcc ggcacagtaa atatccaact aaaccaatag cgttcgctgt
       61 atttaccgcc agtattcaat gcacatgacc gccatgaaca cccctaaaaa aagggcattt
      121 atatgtccaa acattaatat caaaacatca attttttcca tataccttgc tgtgaagatg
      181 atgggcatac atgatgcgaa caaccagaac gcaacaaaca aaaactgcaa tgcgtttttc
      241 attattcccc ctacaatcaa tgtgcaataa catttaaaca cacctcaatt tggccggaca
      301 tataaatatc taaaccagaa aaaatcactt acatagcgtt acaaactctt tagtctaaat
      361 actcatcgta aaacattccc catacttatc agtccgttcc gcgccaggt
//
LOCUS       DAJVUP010000417          409 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.428, whole genome shotgun sequence.
ACCESSION   DAJVUP010000417 DAJVUP010000000
VERSION     DAJVUP010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.428"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            46..409
                     /locus_tag="OQQ75_004432"
                     /pseudo
     CDS             46..409
                     /locus_tag="OQQ75_004432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611947.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          112 a           87 c          103 g          107 t
ORIGIN      
        1 tactgcaccc attttgttgg acgatgaaat ggaatagccc ctaatatgtc aaagccaaaa
       61 tacccttttg aaaagcgcct tgaagtcgtg aatcactact tcactactga tgatggttac
      121 aggatcatct cggcacgttt tggtgtcccc gaacccaggt caggacatgg gttgccctct
      181 atgaaaaaca tggagaaaaa ggcttaattc ccaaacctaa aggtgttagt gctgatccag
      241 agttgcgtat taaggtcgtg aaagctgtga ttgagcagca catgtccctt aatcaggctg
      301 ctgctcactt tatgcttgct ggtagtggtt ctgtagccag gtggctgaag gtttatgaag
      361 agcgcggaga agctggttta cgcgcgctca agattggcac caaaagaaa
//
LOCUS       DAJVUP010000418          395 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.430, whole genome shotgun sequence.
ACCESSION   DAJVUP010000418 DAJVUP010000000
VERSION     DAJVUP010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.430"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..133
                     /locus_tag="OQQ75_004433"
     CDS             <1..133
                     /locus_tag="OQQ75_004433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978503.1"
                     /translation="TGEISMSHKVSVGGGSQVNGALGIGVQNALGGIQLLSGITIQV"
     gene            154..>395
                     /locus_tag="OQQ75_004434"
     CDS             154..>395
                     /locus_tag="OQQ75_004434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1978504.1"
                     /translation="MDVYANGQHVFRFQNGVAIALKNIQAGNAKKFTLSSANNSTKNA
                     AFYLWGNPSRPVVAELGDDSGWHFYSQRNTDGSITFA"
BASE COUNT          105 a           78 c          109 g          103 t
ORIGIN      
        1 gacgggtgaa atatccatgt cgcataaagt gtctgttggc ggtggttcgc aggtcaatgg
       61 tgcgctgggt atcggcgttc agaacgccct ggggggaatt caattgcttt cggggataac
      121 gatacaggta taaaacaaaa cggcgacggc attctggatg tttatgcgaa tggacagcat
      181 gtatttcgtt tccagaatgg tgtggcgata gcgttaaaaa atattcaggc cggaaatgct
      241 aaaaaattca cgttatccag cgccaacaac tccacgaaaa atgcagcgtt ttatttgtgg
      301 ggtaatccat ccaggcctgt tgttgcagag cttggtgatg attccggctg gcatttctac
      361 agccagagaa ataccgatgg tagtatcaca ttcgc
//
LOCUS       DAJVUP010000419          391 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.431, whole genome shotgun sequence.
ACCESSION   DAJVUP010000419 DAJVUP010000000
VERSION     DAJVUP010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.431"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            1..221
                     /locus_tag="OQQ75_004435"
                     /pseudo
     CDS             1..221
                     /locus_tag="OQQ75_004435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001391646.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            269..361
                     /locus_tag="OQQ75_004436"
     CDS             269..361
                     /locus_tag="OQQ75_004436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001441976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS1978505.1"
                     /translation="MNDLPVRQTPMFTLLREAGFSSSPQGLDWG"
BASE COUNT           84 a          104 c          118 g           85 t
ORIGIN      
        1 tacaccagtg gcgctctctg ccaacgatcc ggctaatgtg tggggaaatc ttctgccctg
       61 gcctgcacat ccggcaacgc tggttccaac gcgtcgggcg ggtgcgctgg tggtcgtttc
      121 tagcggcaaa ttgttactct atctggcgca aggtggcaaa aaaatgctgg tctggcagga
      181 aaaagaggaa ttactcgccc cagaggtttt ccacgcgctg actaccgcac tgcgtcgcga
      241 accacggctg cgctttacgc taacagaagt gaatgatcta ccggtccggc aaacgccgat
      301 gtttacgctg ctgcgtgagg cgggattttc aagttcgcca caagggctgg attggggata
      361 gagaaaggac tgacggatgc ccgttcgcat c
//
LOCUS       DAJVUP010000420          379 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.433, whole genome shotgun sequence.
ACCESSION   DAJVUP010000420 DAJVUP010000000
VERSION     DAJVUP010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.433"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>379)
                     /locus_tag="OQQ75_004437"
     CDS             complement(<1..>379)
                     /locus_tag="OQQ75_004437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1978506.1"
                     /translation="NNGSQVNVTDSSLVSDTIGLTNGSSLNIGANGVVATDHLTVDSY
                     STVNLTESTGWNNYSNLYTNTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHN
                     GNVISGVFDINSSDYVLNADLVND"
BASE COUNT          114 a           83 c           78 g          104 t
ORIGIN      
        1 gtcgttcacc agatcagcgt tcagaacgta atcgctgctg ttgatgtcga acacaccaga
       61 aattacgttg ccattatggt cagcaatgtt gccgctggtc agttccagtt tatcagtacg
      121 gaaagcttca gtatcgaact gatcaacatt cacatccagc acaccaccgt tagtcacagt
      181 gatagtattg gtatacagat tagaataatt attccaaccg gtagattcgg ttaaattaac
      241 ggtactgtag ctatcaacag tcaggtggtc tgtagcaacc acgccatttg caccaatatt
      301 cagtgaagaa ccgttggtta aaccaatggt atctgatacc agagaggaat cagtaacatt
      361 tacctgagag ccattattt
//
LOCUS       DAJVUP010000421          372 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.434, whole genome shotgun sequence.
ACCESSION   DAJVUP010000421 DAJVUP010000000
VERSION     DAJVUP010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.434"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>372
                     /locus_tag="OQQ75_004438"
     CDS             <1..>372
                     /locus_tag="OQQ75_004438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1978507.1"
                     /translation="ETRHAYNAQGLANRCIPDSLPAVEWLTYGSGWLAGMKLGDTPLV
                     DFTRDRLHRETLRRFGRYELTTAYTPAGQLQSQHLNSLQYDRDYTWNDNGELIRISSP
                     RQTRSYSYSTTGRLTGVHTTA"
BASE COUNT           84 a          132 c          105 g           51 t
ORIGIN      
        1 atgagaccag acatgcgtac aacgcgcagg gactggcgaa ccgctgtata ccggacagcc
       61 tgcccgccgt ggaatggctg acctacggca gcggctggct ggcaggtatg aagctcggcg
      121 acacaccgct ggtggatttc acccgcgacc gcctgcaccg ggaaacgctg cgccgcttcg
      181 gccgctatga actcaccacc gcttataccc ctgccgggca gttacagagc cagcacctga
      241 acagcctgca gtatgaccgc gattacacct ggaacgacaa cggcgaactc atccgcatca
      301 gcagcccgcg ccagacccgg agttacagct acagcaccac cggcaggctg accggcgttc
      361 acaccaccgc ag
//
LOCUS       DAJVUP010000422          369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.435, whole genome shotgun sequence.
ACCESSION   DAJVUP010000422 DAJVUP010000000
VERSION     DAJVUP010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.435"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>369
                     /locus_tag="OQQ75_004439"
     CDS             <1..>369
                     /locus_tag="OQQ75_004439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HCS1978508.1"
                     /translation="WLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPY
                     VRILTQDEIDVRIKRFWRYLDGTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNL
                     TFIYDPEIPPDDLLLEVAKN"
BASE COUNT           89 a          105 c           88 g           87 t
ORIGIN      
        1 aatggctgga gctggaaggc gcgaaagatc ttgatgacgc actctctctg ctgaccattc
       61 tttaccacca cgtaccgtcg gtcacatcga tgccggtcta cctagggcaa ctggatgcgt
      121 tgttgcaacc gtatgttaga attctaacac aagacgagat cgatgttcga ataaaacgtt
      181 tctggcgtta cctcgacgga accctgccag acgcctttat gcacgccaat atcggcccgt
      241 ctgattcgcc cattacccgc gcgatcttac gtgcagacgc agagttgaag caggtttcac
      301 cgaacctgac ctttatctac gatcctgaaa tcccccctga tgacctgctg ctggaagtgg
      361 cgaagaaca
//
LOCUS       DAJVUP010000423          365 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.436, whole genome shotgun sequence.
ACCESSION   DAJVUP010000423 DAJVUP010000000
VERSION     DAJVUP010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.436"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>365
                     /locus_tag="OQQ75_004440"
     CDS             <1..>365
                     /locus_tag="OQQ75_004440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461117.1"
                     /note="may be involved in resistance to puromycin,
                     acriflavine and tetraphenylarsonium chloride; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multidrug resistance outer membrane protein
                     MdtQ"
                     /protein_id="HCS1978509.1"
                     /translation="QAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVEGVETDINAS
                     KTRQQLNDVAGKMKIIEARLSALTNNQTKSLKLKPVALPKVASQLPDELGYSLLARRA
                     DLQAAHWYVESSLSTIDAA"
BASE COUNT          107 a           89 c           97 g           72 t
ORIGIN      
        1 cccaggcggc gttaaacacg gtcttgcagc aaatagaaaa agagcagaac accattatcg
       61 cgaccgatcg ccagctatat cagaacggga ttacttcttc agttgaaggt gtggaaaccg
      121 atattaatgc cagcaaaacc cggcagcagc tcaacgatgt cgcggggaaa atgaaaatta
      181 ttgaggcacg gttaagcgca cttacaaata accagacaaa gtcattgaag cttaaaccgg
      241 tcgcgttgcc gaaagtggca agccagcttc ctgatgaact ggggtactcc ttactggccc
      301 ggcgggcaga tttgcaggcg gcgcactggt acgttgagtc atcgctaagc accattgatg
      361 cggca
//
LOCUS       DAJVUP010000424          365 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.437, whole genome shotgun sequence.
ACCESSION   DAJVUP010000424 DAJVUP010000000
VERSION     DAJVUP010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.437"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..355)
                     /locus_tag="OQQ75_004441"
     CDS             complement(<1..355)
                     /locus_tag="OQQ75_004441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1978510.1"
                     /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL
                     QYQPNKQARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT
                     SHNPAEDLQKCESKIK"
BASE COUNT           89 a           82 c           90 g          104 t
ORIGIN      
        1 gcttaatttt gctttcacat ttttgtaagt cttctgccgg attgtgcgac gtctgcaata
       61 tcacgtcgaa accttcctct tcagctttgg cggtgatggc atgcaaaact tcagagaaaa
      121 acggattacc cgccgtagtt ttggtcgaac gggtagaaat caccataatg gcatcaaaac
      181 ccgaagaggt cagcgcgcgg gcctgcttgt ttggctgata ctgtaattct tcaatggccc
      241 gtaacacttt ttcgcgcgct tccggggaga tattagtttg cttattcagc acgcgtgata
      301 cggtggattt tgatacgcct gcaaccctgg caatatcata aatagtaggg gacataggtc
      361 aggaa
//
LOCUS       DAJVUP010000425          361 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.438, whole genome shotgun sequence.
ACCESSION   DAJVUP010000425 DAJVUP010000000
VERSION     DAJVUP010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.438"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>361
                     /locus_tag="OQQ75_004442"
     CDS             <1..>361
                     /locus_tag="OQQ75_004442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HCS1978511.1"
                     /translation="KQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHL
                     KGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPR
                     VVKERPWKYPTAPKKSQS"
BASE COUNT          108 a           71 c          111 g           71 t
ORIGIN      
        1 aaacagacga tgcaactgag caggctgacg ctgagaagta aaaagccgga gcttgtggag
       61 caagagctgt ggggtgtctt actggcttat aatctggtga gatatcagat gattaaaatg
      121 gcggaacatc tgaaaggtta ctggccgaat caactgagtt tctcagaatc atgcggaatg
      181 gtgatgagaa tgctgatgac attgcagggc gcttcaccgg gacgtatacc ggagctgatg
      241 cgcgatcttg caagtatggg acaacttgtg aaattaccga cgagaagggg aagggccttc
      301 ccgagagtgg taaaggagag gccctggaaa taccccacag ccccgaaaaa gagccagtca
      361 g
//
LOCUS       DAJVUP010000426          359 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.439, whole genome shotgun sequence.
ACCESSION   DAJVUP010000426 DAJVUP010000000
VERSION     DAJVUP010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.439"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>359
                     /locus_tag="OQQ75_004443"
     CDS             <1..>359
                     /locus_tag="OQQ75_004443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978512.1"
                     /translation="TIINDNIVEKTHDINNKEMIFSALKEIYDGAPSFIFDKISHKLR
                     HTVTEFDESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRG
                     IRINGDSLTQYCSENAR"
BASE COUNT          136 a           64 c           69 g           90 t
ORIGIN      
        1 actatcatta atgacaacat agttgagaag actcatgata tcaataacaa ggaaatgatc
       61 ttcagcgcat taaaagaaat atatgatgga gctcctagtt ttatcttcga taagatatca
      121 cacaaactca gacatacggt aacggaattt gatgagagcg ggaaaagcga accaacggac
      181 ttatttacct ggtacggtaa agataaaaaa ggcgactctc tcgctattgt aattaaaaat
      241 aaaaacggaa atgattactt atccctcggt tactacgatc aggacgacta ccacattcaa
      301 agaggaattc gtattaatgg tgatagtctc acccaatatt gtagtgaaaa cgccaggag
//
LOCUS       DAJVUP010000427          359 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.440, whole genome shotgun sequence.
ACCESSION   DAJVUP010000427 DAJVUP010000000
VERSION     DAJVUP010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.440"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>359)
                     /locus_tag="OQQ75_004444"
     CDS             complement(<1..>359)
                     /locus_tag="OQQ75_004444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1978513.1"
                     /translation="PVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINMPLFIIDELH
                     LTDKLAGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASVLMATTPA
                     VELELQILNAIFLGILCG"
BASE COUNT          110 a           87 c           74 g           88 t
ORIGIN      
        1 ccacagagaa taccaaggaa gatggcattt agaatttgca attccagctc aaccgccgga
       61 gtcgtcgcca tgagtacgct ggcgtaaaaa cacataccac tcacgatagc aatgagcatt
      121 aatagtcgct tgccaatacg tttcatgtaa tagcctgcga ttaacatcat cggaatttcc
      181 agaccggcag cgataccaat catttctcca gccagtttat cggttagatg cagttcatca
      241 ataataaata gcggcatatt tatcatgtag agattattcg ccgcccacat cattgaacag
      301 accacaaaaa gtagccgcgt atcccgcttc ctatgggtgg agggtaaaat ttctacggg
//
LOCUS       DAJVUP010000428          357 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.441, whole genome shotgun sequence.
ACCESSION   DAJVUP010000428 DAJVUP010000000
VERSION     DAJVUP010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.441"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..92
                     /locus_tag="OQQ75_004445"
     CDS             <1..92
                     /locus_tag="OQQ75_004445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1978514.1"
                     /translation="SLQAMDFSVITDKTSYNAIEWPASPEISS"
     gene            116..>357
                     /locus_tag="OQQ75_004446"
     CDS             116..>357
                     /locus_tag="OQQ75_004446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1978515.1"
                     /translation="MSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMHTVADVMTG
                     NDGEYCFHARTGKYGVYLKPGWHNEYNVGDIAVYEDS"
BASE COUNT           95 a           79 c           90 g           93 t
ORIGIN      
        1 aatcgctgca ggcgatggat ttcagtgtca tcactgataa aacctcatac aacgccattg
       61 aatggcccgc ctctccggaa atttcttcct gatttaattt atcgcgagaa aaactatgtc
      121 tgtagtgata tcaggtgcgc tgactgatgg cgcaggtatc cccatgtccg gataccatat
      181 tattctgaaa tcccgggtaa acaccccgga agtggtgatg cacactgttg ctgatgtgat
      241 gacaggaaac gatggtgaat actgtttcca tgcgcggact ggaaaatatg gtgtgtatct
      301 gaaaccgggc tggcacaacg agtacaacgt tggcgacatt gctgtatatg aggactc
//
LOCUS       DAJVUP010000429          354 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.442, whole genome shotgun sequence.
ACCESSION   DAJVUP010000429 DAJVUP010000000
VERSION     DAJVUP010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.442"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            74..>354
                     /locus_tag="OQQ75_004447"
     CDS             74..>354
                     /locus_tag="OQQ75_004447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1978516.1"
                     /translation="MEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTVCGMFVRFRN
                     AGLSWPLPAGMSEQELDALLYGSASTVPVVLTESTVMPKLPVVKKRPRRP"
BASE COUNT           79 a          100 c           83 g           92 t
ORIGIN      
        1 atttaaaccg tctggtctgt ttcctccggc tccacaaaaa taatgtccat cattttgaag
       61 tggacactat cgtatggaat accggacctg gatcactgaa gctttacgcc ttcatttcga
      121 agaacattta ccacgggttg tggccggacg tcgcctgggc gtaccaaaat caactgtctg
      181 tggtatgttc gtgcgcttcc gcaacgctgg cctttcatgg cctctgcccg caggtatgtc
      241 ggagcaggaa cttgatgccc ttctttacgg aagtgcctcc acagtacctg tcgtacttac
      301 tgaaagcacc gttatgccca aactcccggt ggtaaaaaaa cgtccccggc ggcc
//
LOCUS       DAJVUP010000430          346 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.444, whole genome shotgun sequence.
ACCESSION   DAJVUP010000430 DAJVUP010000000
VERSION     DAJVUP010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.444"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>346
                     /locus_tag="OQQ75_004448"
     CDS             <1..>346
                     /locus_tag="OQQ75_004448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS1978517.1"
                     /translation="RTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKF
                     RATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIV
                     GYAMGERMTKELT"
BASE COUNT           91 a           92 c           98 g           65 t
ORIGIN      
        1 tccgcactcg cgaaacatat ggaacccggc ggctccagac ggagctggca gagaatggca
       61 tcatcgttgg tcgtgaccga ctggcacgtc ttcgtaagga gctaaggcta cgctgtaagc
      121 agaaacgcaa gttcagagcg actacgaacc cgaaccacaa tctgccagtt gcgccaaatc
      181 tgctgaacca gacgttcgct cctacagcac caaatcaggt ctgggtggcg gacctgacgt
      241 atgttgccac acaggaggga tggttgtacc tcgctggcat caaagatgtt tatacgtgcg
      301 aaattgtcgg ctacgccatg ggagagcgca tgacaaaaga gctgac
//
LOCUS       DAJVUP010000431          338 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.445, whole genome shotgun sequence.
ACCESSION   DAJVUP010000431 DAJVUP010000000
VERSION     DAJVUP010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.445"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
BASE COUNT          107 a           78 c           66 g           87 t
ORIGIN      
        1 cctttgcacc agaataaacg ccagagacct gaaattgcga gtacactaca gaaattgtac
       61 tgccggtccc atcagcataa aaccatagtt acacaggtaa tcatcattat tcgccaagat
      121 aataaatatt attcggtaga atagcgttct caggtggtca gtaaaattgt cttcaacaag
      181 atgtctgcgc atctcgtctg ctagccctac ataactgctc tcgaccgaaa ctatttattg
      241 aatgttcacc aaggtgggcg tggagacaaa atgacgtctt ttggtattag ctacctgagc
      301 cacatggtca aaacgttcaa gtagcatagc gaaaccac
//
LOCUS       DAJVUP010000432          335 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.446, whole genome shotgun sequence.
ACCESSION   DAJVUP010000432 DAJVUP010000000
VERSION     DAJVUP010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.446"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(52..216)
                     /locus_tag="OQQ75_004449"
                     /pseudo
     CDS             complement(52..216)
                     /locus_tag="OQQ75_004449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135853.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
     gene            complement(203..>335)
                     /locus_tag="OQQ75_004450"
     CDS             complement(203..>335)
                     /locus_tag="OQQ75_004450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1978518.1"
                     /translation="EDKEKLKACRIYAKSLQAMDFSTITDKATYNAINWPERPDAAA"
BASE COUNT           72 a           82 c           86 g           95 t
ORIGIN      
        1 ctgctcaaaa aaagaacaaa tggtagtgtc cgctattgcc agtacacctc acacacccgg
       61 cagaacgggg aagtcatatt ccccgttctg tgtggtgaca tggctgaaaa cacttttcag
      121 aatccctgca cggttgtgta tggaggttag tgtaatggtt gcgccgtcca gcggttctcc
      181 cgtgggcgtt ttaatcacac ctttaagctg cggcatcggg acgctccggc cagttgatgg
      241 cgttatatgt ggctttatct gtgatggtgc tgaaatccat cgcctgcagc gatttcgcgt
      301 aaatacgaca ggctttcagc ttttctttat cttcg
//
LOCUS       DAJVUP010000433          330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.447, whole genome shotgun sequence.
ACCESSION   DAJVUP010000433 DAJVUP010000000
VERSION     DAJVUP010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.447"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            73..261
                     /locus_tag="OQQ75_004451"
     CDS             73..261
                     /locus_tag="OQQ75_004451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1187 family protein"
                     /protein_id="HCS1978519.1"
                     /translation="MYKITATIEKEGGSPASWTRYSKTKLTKSECEKMLSGEKEAGVS
                     REQKVKLINFNCEKLQSS"
BASE COUNT          124 a           54 c           69 g           83 t
ORIGIN      
        1 caagcaggat acgatgagaa tattccggtg taaaaccaag tgcattttgg gaaaatatta
       61 atggaggtgt tcatgtataa aattacagcc actattgaaa aggaaggtgg ttctcctgcc
      121 agctggacaa gatactcaaa gacaaaacta acgaaatcag aatgcgaaaa aatgctctca
      181 ggggaaaaag aagctggcgt ttccagagag cagaaagtaa aactgataaa ttttaattgc
      241 gagaaacttc agtcctcgtg aattgcattg tattcaaatt aaaacttcat agctgattat
      301 taataatcaa catcgggcgt caatttcagc
//
LOCUS       DAJVUP010000434          328 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.448, whole genome shotgun sequence.
ACCESSION   DAJVUP010000434 DAJVUP010000000
VERSION     DAJVUP010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.448"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            189..308
                     /locus_tag="OQQ75_004452"
                     /pseudo
     CDS             189..308
                     /locus_tag="OQQ75_004452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
BASE COUNT           84 a           78 c           99 g           67 t
ORIGIN      
        1 gcagtctaaa tacagacttt cgaaccggaa ggctcagcga aagctggcgc tggtaaggaa
       61 acagtatccg aagctatttg cccactggta tttactacgt gcatcgaatg agtgatcaag
      121 agccgtatga cgcgagagtg tcacgtacgg ttccgtgagc agccggagag tgaaactctc
      181 tccgacgggg ttccgatagc ggtggcgaac atgcggcggt gttgtactcg ctgatcggca
      241 catgccgtct gaacaatgtg gagccagaaa aatggctgcg ttacgtcatt gagcatatcc
      301 aggactgacc ggcaaaccgg gtacgcga
//
LOCUS       DAJVUP010000435          326 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.449, whole genome shotgun sequence.
ACCESSION   DAJVUP010000435 DAJVUP010000000
VERSION     DAJVUP010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.449"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>326)
                     /locus_tag="OQQ75_004453"
     CDS             complement(<1..>326)
                     /locus_tag="OQQ75_004453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSS-motif domain-containing protein"
                     /protein_id="HCS1978520.1"
                     /translation="DTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDT
                     VTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLIT
                     HFYNHL"
BASE COUNT          104 a           67 c           67 g           88 t
ORIGIN      
        1 ataagatgat tataaaaatg ggttataaga cgttgatatg aagtcgcaac aatggctgca
       61 attgggcgtt ttgtcgaata aactgtcgca tataaatagc catttctttg tacggttaaa
      121 tccttcaaat gaatcagcgg agaaaacgtt gctgccgagg cctctttgct taacgagaaa
      181 aaggttttcg tcaccgtatc atacacaccc cattgcaatg tcggatcatc agacatcact
      241 tcactccaga agagagggtt gataaccgcc acataatttc cccgctgcat ataggtcatt
      301 ttatagccag agaaaaaagg cgtatc
//
LOCUS       DAJVUP010000436          321 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.452, whole genome shotgun sequence.
ACCESSION   DAJVUP010000436 DAJVUP010000000
VERSION     DAJVUP010000436.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.452"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            178..>321
                     /locus_tag="OQQ75_004454"
     CDS             178..>321
                     /locus_tag="OQQ75_004454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000820618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1978521.1"
                     /translation="MKRHNQRLKIISEYFGGVPVKNIGIREVYSFLEIRAAGSKFAIA
                     NQYR"
BASE COUNT          123 a           46 c           72 g           80 t
ORIGIN      
        1 atcggaagag acaaaagaat tgcagttaat gaggctattg cggcaaatat ggaattatta
       61 tccacgcaac atataagctt actggataga ataaaaggta atagcgtaac attattctgc
      121 gagctgatat taaatttcag aaatgaaata gagcgtagac aattaagcac aaacaccatg
      181 aaaagacaca accagaggtt gaaaatcata agtgaatact ttggtggtgt tccggttaaa
      241 aatataggca taagggaggt gtacagcttt cttgaaatca gagcagctgg gagtaaattt
      301 gctattgcta accagtacag g
//
LOCUS       DAJVUP010000437          317 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.454, whole genome shotgun sequence.
ACCESSION   DAJVUP010000437 DAJVUP010000000
VERSION     DAJVUP010000437.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.454"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>317)
                     /locus_tag="OQQ75_004455"
     CDS             complement(<1..>317)
                     /locus_tag="OQQ75_004455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005166249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978522.1"
                     /translation="FHQFLSDGLRPIVDEDDDAYEDDYFNVHITLVNGGPVIPLSVEP
                     DAPQNEETDDIGQLNAFFDALDCEPETTDRFMITDEDGEDAFIRIGSIAMVRVALDVL
                     EPV"
BASE COUNT           87 a           87 c           65 g           78 t
ORIGIN      
        1 tccactggtt ccagcacatc aagcgcaact cgcaccatag cgatagaacc aatacgaatg
       61 aaagcatctt ctccatcttc gtcggttatc ataaaacgat ccgtggtttc aggctcgcaa
      121 tccagcgcgt caaaaaatgc attcaactgg ccgatatcat ccgtctcttc gttttgcggc
      181 gcatctggct caacactcag tggaatcact ggtccgccgt ttaccagcgt gatatggaca
      241 ttaaaataat cgtcttcgta ggcatcatcg tcttcgtcaa cgattggccg cagaccatca
      301 gaaaggaact gatgaaa
//
LOCUS       DAJVUP010000438          317 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.455, whole genome shotgun sequence.
ACCESSION   DAJVUP010000438 DAJVUP010000000
VERSION     DAJVUP010000438.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.455"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>317
                     /locus_tag="OQQ75_004456"
     CDS             <1..>317
                     /locus_tag="OQQ75_004456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HCS1978523.1"
                     /translation="YPALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEES
                     WLEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVH
                     SGS"
BASE COUNT           80 a           75 c           83 g           79 t
ORIGIN      
        1 tttatccggc actggtcggc aatgatatcg gctgcggtat ggcgctatgg caaacagata
       61 ttctcgctcg caaatacaac gccgataagt ttgaaaagcg attatcagat ctggatgacg
      121 ttgctgaaga aagctggctg gaggaaaacc tgccgtcagc atttgcacag catccgtggt
      181 gcagctcgct tggctctatc ggtggcggca atcatttcgc tgaactgcaa caagttgatc
      241 aaatcatcaa cgctgaactg tttgcactag caggtctgga tgcacaacat ctgcaactgt
      301 tggttcatag cggctcg
//
LOCUS       DAJVUP010000439          315 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.456, whole genome shotgun sequence.
ACCESSION   DAJVUP010000439 DAJVUP010000000
VERSION     DAJVUP010000439.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.456"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..211)
                     /locus_tag="OQQ75_004457"
     CDS             complement(<1..211)
                     /locus_tag="OQQ75_004457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HCS1978524.1"
                     /translation="MRHFIYQDEKSHKFWAVEQQGNELHISWGKVGTKGQSQIKSFSD
                     AAAAAKAELKLIAEKVKKGYVEQAKD"
BASE COUNT           77 a           82 c           52 g          104 t
ORIGIN      
        1 tatccttcgc ttgctccaca taccccttct tcaccttctc cgcaatcagc ttaagctccg
       61 cttttgccgc tgccgcagca tctgaaaaac tttttatctg gctttgccct ttggtgccaa
      121 cttttcccca actgatatgc aactcgtttc cctgttgctc aactgcccag aatttatgtg
      181 atttttcgtc ctgatagata aagtgtctca ttctgcatcc ctgtaatttt atccagttga
      241 atgcagatgc taccagtatt tatgcgggtt agagagagac aaaatcgcaa gaaaacaact
      301 ttaggaattt ataaa
//
LOCUS       DAJVUP010000440          309 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.457, whole genome shotgun sequence.
ACCESSION   DAJVUP010000440 DAJVUP010000000
VERSION     DAJVUP010000440.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.457"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>309
                     /locus_tag="OQQ75_004458"
     CDS             <1..>309
                     /locus_tag="OQQ75_004458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HCS1978525.1"
                     /translation="SFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQL
                     LWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYS
                     A"
BASE COUNT           78 a           73 c           98 g           60 t
ORIGIN      
        1 gtcgttctcg ccggacagca ggctcaccat gaaagcgctg gaaatggcat gggaaacccg
       61 tggtaagccc ggcggggtga tgttccacag cgatcagggc agtcattata cgagcaggca
      121 gttccggcag ttattgtggc gataccagat cagacagagt atgagccggc gcggaaactg
      181 ctgggataac agcccaatgg aacgcttctt caggagtctg aagaacgaat ggatgccggt
      241 ggtgggttac gtaagcttca gcgaggcagc tcacgccata acggactata tcgttggata
      301 ttacagcgc
//
LOCUS       DAJVUP010000441          308 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.458, whole genome shotgun sequence.
ACCESSION   DAJVUP010000441 DAJVUP010000000
VERSION     DAJVUP010000441.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.458"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..263)
                     /locus_tag="OQQ75_004459"
     CDS             complement(<1..263)
                     /locus_tag="OQQ75_004459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HCS1978526.1"
                     /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE
                     SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPG"
BASE COUNT           88 a           75 c           84 g           61 t
ORIGIN      
        1 cccggcagca tgatgtccag gcgattcaca atctggtgaa gaggttcttt acgctcaagc
       61 gccatgccaa caatacacca gaccatcatt tcgaggggaa gacggcgctt gcgtagcgtt
      121 acagtacctg attcggcaag gcaacgagag atgagttcgg ggtcgaggta atcccccaga
      181 gaagtcagtg ggttacgcag agaatcgtaa cgggatacca gatcaagagc ctgtccaatg
      241 tgcataaaaa aatccggaaa caagtgagcg tttccggatt cttacacagc cactggatcg
      301 gtcaactg
//
LOCUS       DAJVUP010000442          308 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.459, whole genome shotgun sequence.
ACCESSION   DAJVUP010000442 DAJVUP010000000
VERSION     DAJVUP010000442.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.459"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..>308)
                     /locus_tag="OQQ75_004460"
     CDS             complement(<1..>308)
                     /locus_tag="OQQ75_004460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector OspC family protein"
                     /protein_id="HCS1978527.1"
                     /translation="HYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNNIL
                     NIKSFDKIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFG
                     A"
BASE COUNT          106 a           31 c           57 g          114 t
ORIGIN      
        1 gcgccaaaat ctacagtatg atgtgtttta tttagcggga gtttttcttg atgattggaa
       61 atttcaaccc caaaaaaaac aaaatcgtgg ttagagattt ctttaatatc ctcagagtat
      121 gtattcttat gtgtttgtat attttcagac tgaattttat caaaggattt aatattaaga
      181 atattatttg acagattaga gttactttga tgtctgaagt taaaattaga attaataata
      241 atagaaagta agtgacgttc gtctgaagaa agaggatgaa ctttttgtat tatctcagag
      301 atatagtg
//
LOCUS       DAJVUP010000443          305 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.460, whole genome shotgun sequence.
ACCESSION   DAJVUP010000443 DAJVUP010000000
VERSION     DAJVUP010000443.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.460"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..181
                     /locus_tag="OQQ75_004461"
     CDS             <1..181
                     /locus_tag="OQQ75_004461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HCS1978528.1"
                     /translation="ARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHT
                     VNSSDMATLKIIGDD"
     gene            207..>305
                     /locus_tag="OQQ75_004462"
     CDS             207..>305
                     /locus_tag="OQQ75_004462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
                     /protein_id="HCS1978529.1"
                     /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNE"
BASE COUNT          103 a           69 c           61 g           72 t
ORIGIN      
        1 cgcccgtagc gccagtcaga gtctgaatat tccttcagaa ataaaagaag ggcaaaccac
       61 tgactggatc aacattaaca gtgataacga caataaacgc tgcgtctcaa aaatcacctt
      121 ttccggtcat acggtgaact catcggatat ggccacgctg aaaattatcg gcgacgacta
      181 acgccagaat atagaagcca caaaaaatga atgttaatta cctgaatgat tcagatctgg
      241 attttcttca gcattgtagt gaggaacagt tggcaaattt cgcccgattg ctcacccata
      301 atgaa
//
LOCUS       DAJVUP010000444          305 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.461, whole genome shotgun sequence.
ACCESSION   DAJVUP010000444 DAJVUP010000000
VERSION     DAJVUP010000444.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.461"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>305
                     /locus_tag="OQQ75_004463"
     CDS             <1..>305
                     /locus_tag="OQQ75_004463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1978530.1"
                     /translation="LMNNSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRL
                     AEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMT"
BASE COUNT           85 a           67 c           73 g           80 t
ORIGIN      
        1 cgttgatgaa caattccgat gcccgaaaaa cgtcggcgtt actatttctt gatggcgata
       61 atttcaaata tatcaatgat acctggggtc atgcgacggg cgatagggtc ttgattgaaa
      121 tcgcaaaacg gttagctgaa tttggcgggc tgcgacataa agcataccgc ctgggcggcg
      181 atgaattcgc tatggtgctc tatgatgtac agtcggaatc tgaagtgcaa cagatatgct
      241 cagcactgac acaaatcttt aatctcccgt ttgatcttca taatggccat cagaccacca
      301 tgaca
//
LOCUS       DAJVUP010000445          304 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.462, whole genome shotgun sequence.
ACCESSION   DAJVUP010000445 DAJVUP010000000
VERSION     DAJVUP010000445.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.462"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>304
                     /locus_tag="OQQ75_004464"
     CDS             <1..>304
                     /locus_tag="OQQ75_004464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310435.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HCS1978531.1"
                     /translation="NVFMGYFDEPELTARALDEEGWYCSGDLCRMDEAGYIKITGRKK
                     DIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLSL"
BASE COUNT           80 a           59 c           83 g           82 t
ORIGIN      
        1 aatgtgttta tggggtattt tgatgaacct gaattaaccg cccgtgcgct ggacgaagaa
       61 ggctggtatt gcagcggcga tctctgccgt atggatgagg ctggctatat aaaaattacc
      121 ggacgcaaaa aagatattat tgtccgcggc ggcgaaaata ttagcagccg tgaagtggaa
      181 gatattttat tgcagcatcc taaaattcac gatgcctgtg tggttgcaat gcccgatgaa
      241 cgtttaggtg aacgatcatg cgcttatgtc gtgctgaaag cgccgcatca ttcattatcg
      301 ctgg
//
LOCUS       DAJVUP010000446          303 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.463, whole genome shotgun sequence.
ACCESSION   DAJVUP010000446 DAJVUP010000000
VERSION     DAJVUP010000446.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.463"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            108..>303
                     /gene="grxD"
                     /locus_tag="OQQ75_004465"
     CDS             108..>303
                     /gene="grxD"
                     /locus_tag="OQQ75_004465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin 4"
                     /protein_id="HCS1978532.1"
                     /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG
                     ERFAYVDILQNPDIRAELPKY"
BASE COUNT           90 a           72 c           73 g           68 t
ORIGIN      
        1 aaagggataa aatagcaaaa gcgtgatgaa aatgttattt tccgatgccg cactgacccg
       61 ctacaatgtc agattactgc cgtaaagaag tttgaggaag caagacaatg agcaccacta
      121 tcgaaaaaat ccaacgccag attgctgaaa acccgatcct gctgtacatg aaaggttcac
      181 cgaaactgcc gagctgcggt ttctctgccc aggcagtcca ggcgcttgcc gcatgtggcg
      241 aacgttttgc ctatgttgat attctgcaga atccggacat tcgtgcggaa ctgccgaaat
      301 atg
//
LOCUS       DAJVUP010000447          302 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.denovo.464, whole genome shotgun sequence.
ACCESSION   DAJVUP010000447 DAJVUP010000000
VERSION     DAJVUP010000447.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.denovo.464"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..>302
                     /locus_tag="OQQ75_004466"
     CDS             <1..>302
                     /locus_tag="OQQ75_004466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1978533.1"
                     /translation="LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADA
                     TESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKV"
BASE COUNT           63 a           89 c           79 g           71 t
ORIGIN      
        1 cttgaccgcc tttccgatac cgtctctgca cgcaatacct ccggattccg tgaacaggtc
       61 gctgcatggc tggaaaaact cagtgcctct gcggagcttc gacagcagtc tttcgctgtt
      121 gctgctgatg ccactgagag ctgtgaggac cgtgtcgcgc tcacatggaa caatctccgg
      181 aaaaccctcc tggtccatca ggcatcagaa ggccttttcg ataatgatac cggcgctctg
      241 ctctccctgg gcagggaaat gttccgcctc gaaattctgg aggacattgc ccgggataaa
      301 gt
//
LOCUS       DAJVUP010000448         4695 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.226, whole genome shotgun sequence.
ACCESSION   DAJVUP010000448 DAJVUP010000000
VERSION     DAJVUP010000448.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4695
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.226"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..2782)
                     /locus_tag="OQQ75_004467"
     CDS             complement(<1..2782)
                     /locus_tag="OQQ75_004467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /protein_id="HCS1978534.1"
                     /translation="MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSR
                     GDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTR
                     REHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
                     GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGP
                     VTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQK
                     RMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALA
                     SACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRV
                     RRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
                     KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRS
                     LGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPD
                     SLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA
                     EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGG
                     GEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDS
                     IFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDH
                     DADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLT
                     QAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYT
                     DGQEDQLGTLGLV"
     gene            2946..3503
                     /locus_tag="OQQ75_004468"
     CDS             2946..3503
                     /locus_tag="OQQ75_004468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1978535.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGD
                     MGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTG
                     ATEIAHQLSIARSTVYKILEDERAS"
     gene            3686..4546
                     /locus_tag="OQQ75_004469"
     CDS             3686..4546
                     /locus_tag="OQQ75_004469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HCS1978536.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
BASE COUNT         1184 a         1160 c         1164 g         1187 t
ORIGIN      
        1 tgaccagccc cagtgtgccc agttgatctt cctgaccgtc ggtatatcgt tttcttatct
       61 cacctttttg accgtgacag atggctctgg caacggcatg gcgactttct ccccgattaa
      121 gctgggtcag aatgcgccgg cggtaatctt catcatcaat ataattaagc agatacagcg
      181 ttttgttgat gcgccccact tcaatgattg cctgagtcag tccggaagga cgttcacttt
      241 tcagcaatga acggaccagc actgaaacct gtactttgcc cagcttcagg gagccagcgg
      301 tccggatcat ttcgtcccac tgaaggacta tttttcgggg atctgattgc cctctggcaa
      361 tatcattcag cacgccatag tcggcatcat ggtccattcg ccagaaaacc gaagcaccgg
      421 catcagccag gcgtggagaa aactggtatc ccagcagcca gaaaaggcca aagacaagtt
      481 cgctggcacc tgctgtatcg gtcataattt cggttggatt cagcccggtc tcctgttcca
      541 gaagaccttc cagcacaaag atagagtccc tcagcgtccc cggtataacg atgccatgaa
      601 agccggaata ctgatcggac acaaagttgt accaggtgat ccctctgtta ttaccaaagt
      661 atttgcggtt cggtccggca ttgattgttc tgactggcgt aacaaagcgc attccatctg
      721 cagatgccac ttctcctcca ccccatatct gtgccagtgg cagcgttgcc tgaaaatcaa
      781 ccagtctggc attagcgctg gtgatagttt cagcccgcag atagttcgct tttgtccagt
      841 tcagccggtg tcgggtcagt gcaggaacat ttgatctgat cagtggttcc agaccgatat
      901 tgcaggcttc agccatcagc acggcgctga tgctgacggg cagatcatca actctggcac
      961 tggcttcact agcatggaaa aactcatcag caaatccggt atgggcgtta atttcgagca
     1021 gcaactccgt taaatccacc ggagggagta gatcactgat cattttgctc agtcgtttca
     1081 gactgtccgg ctcatcaaga ctggcgaggg gagaaattgt caaccggggc ttcgggccag
     1141 aaacatcgag ttcgacagcc tcattttcgc aaagacgtgc agcaacctgt ctgtaacgac
     1201 tatcaagctg atgacccaga gattttattg cttcctgcgg gtctgtcggg tgccccaaag
     1261 aacgataaac cttaatccgg tttgcctgcc agtcagcacc ctgtagtaat cttgcacgag
     1321 gatctcccca ccggttactg ccggtaacgt agacatccct ccgcctcaga ctatcctgca
     1381 gtttactgag aaagcagagc gtgtatcccc tgcgggtgat atgtttttcc ttgttaatca
     1441 ccagccgttt ccatgaccga ctgataattt ccgttggtgc gtcgtcaaaa aactgccgcc
     1501 gtgagctgaa ctcccggctg aggtagtcac aggcattcag agtggtaacc ccggcaggtg
     1561 cggatgaaaa tttaacggta ttcagcagat ggggcaggaa acgacgaacg cgcccgtact
     1621 gctccaccat ttcttcatga aaattatcgt ctgagggccg ggcaatttca cggacaagcg
     1681 tgatgatttc agccagcttt tgccttggga tgtagctgaa cacctcagca cgaatcgatt
     1741 cgtccggtgt ttcttctttc agcaggtacg aacatgcgct ggcgagcgcc aatgcagatt
     1801 tatccagatc cttcagcgag cggagccgtt ttttctgccc aatctttctg gcgtcacgga
     1861 tgataacggc cagcatggcg tccagaacgt ccaatgcatc atccagcgcc agcgtttccc
     1921 atgcaaggac aaaggcaacc agaaccgcca tccttttctg cggtgacatc ctggcaatat
     1981 tgaacaccga agtcatacca gcataacgtg cgagattttt caggcgcaca gccgggagtg
     2041 tactcaggtt ttcagcatgc aggccaaaat cgttcagagt tttccagcgt tcaattgctt
     2101 cattaaacgc cggaccactg atggtcacag ggcccttttt cagtgattcc agtaaagaca
     2161 ggcggctgca atcagttggc cccagcagca tctccagctg tgaacgctgt tcggctgacg
     2221 gtatcagtgc cagtttgttc cacaggcgca acgtcgcctt ttcccttacc tctgaaatca
     2281 accgggtcag cgtagtggct ccggggagaa taatacgatg ttgcataagc caccctgtcg
     2341 ccagatcgaa aagcaggcca ggacgttcgt tgcttatcca gctccgggta tataaaagac
     2401 gggtaaggcg aaatgtccag ggccaggcaa attcacgata ctgatagtgc tgacgtatca
     2461 gcgctgcatg ctcacggcgg gtattttccc tctgaccgta ttctgcaaga acggtgatat
     2521 cacgaatccc gagctgtctg gcggtaaaat gccggacgcc ggaaggaata tgattcatat
     2581 cggtgaggaa ggtgcccaga aaacggacac atccaatttg cagggcaatg cccagacggt
     2641 tgtgatcacc tctgcttttt ccgataaatt ccttgtctgc ttcatcaagg tgaaaatatc
     2701 gtgccagctg aagctcatcc ggttcaccgg tgaatctgcc atagctttca gtctgctcag
     2761 tggtcagaaa gtcaacgggc atatcggcct ccctgcctga cgggcattta gtaacatttt
     2821 tccaaccgta cgaaatgtta taaattatcg gacatcgtaa aactgttaca ttaatatgtc
     2881 tattaaatcg taaatttgta ataatagaca tgagttgtcc gatattcgat ttaaggtaca
     2941 tttttatgcg actttttggt tacgctcggg tctcaaccag tcagcagtct cttgatcttc
     3001 aggtcagagc actcaaagac gcaggtgtga aagcaaaccg tatatttacc gataaggcat
     3061 ccggcagttc aacagaccgg gaagggctgg atttgctgag gatgaaggtg gaggaaggtg
     3121 atgtcattct ggttaagaag ctcgaccgtc ttggccgcga cactgccgat atgatccaac
     3181 tgataaagga atttgacgct cagggcgtgg cagtccggtt cattgatgac gggatcagta
     3241 ccgacggtga tatggggcaa atggtggtca ccatcctgtc ggctgtggca caggctgaac
     3301 gccggaggat cctagaacgc acgaatgagg gccgacagga agcaaagctg aaaggaatca
     3361 aatttggccg caggcgtacc gtggacagga acgtcgtgct gacgcttcat cagaagggca
     3421 ctggtgcaac ggaaattgct catcagctca gtattgcccg ctccacggtt tataaaattc
     3481 ttgaagacga aagggcctcg tgatacgcct atttttatag gttaatgtca tgataataat
     3541 ggtttcttag acgtcaggtg gcacttttcg gggaaatgtg cgcggaaccc ctatttgttt
     3601 atttttctaa atacattcaa atatgtatcc gctcatgaga caataaccct ggtaaatgct
     3661 tcaataatat tgaaaaagga agagtatgag tattcaacat tttcgtgtcg cccttattcc
     3721 cttttttgcg gcattttgcc ttcctgtttt tgctcaccca gaaacgctgg tgaaagtaaa
     3781 agatgctgaa gatcagttgg gtgcacgagt gggttacatc gaactggatc tcaacagcgg
     3841 taagatcctt gagagttttc gccccgaaga acgttttcca atgatgagca cttttaaagt
     3901 tctgctatgt ggtgcggtat tatcccgtgt tgacgccggg caagagcaac tcggtcgccg
     3961 catacactat tctcagaatg acttggttga gtactcacca gtcacagaaa agcatcttac
     4021 ggatggcatg acagtaagag aattatgcag tgctgccata accatgagtg ataacactgc
     4081 tgccaactta cttctgacaa cgatcggagg accgaaggag ctaaccgctt ttttgcacaa
     4141 catgggggat catgtaactc gccttgatcg ttgggaaccg gagctgaatg aagccatacc
     4201 aaacgacgag cgtgacacca cgatgcctgc agcaatggca acaacgttgc gcaaactatt
     4261 aactggcgaa ctacttactc tagcttcccg gcaacaatta atagactgga tggaggcgga
     4321 taaagttgca ggaccacttc tgcgctcggc ccttccggct ggctggttta ttgctgataa
     4381 atctggagcc ggtgagcgtg ggtctcgcgg tatcattgca gcactggggc cagatggtaa
     4441 gccctcccgt atcgtagtta tctacacgac ggggagtcag gcaactatgg atgaacgaaa
     4501 tagacagatc gctgagatag gtgcctcact gattaagcat tggtaactgt cagaccaagt
     4561 ttactcatat atactttaga ttgatttaaa acttcatttt taatttaaaa ggatctaggt
     4621 gaagatcctt tttgataatc tcatgaccaa aatcccttaa cgtgagtttt cgttccactg
     4681 agcgtcagac cccta
//
LOCUS       DAJVUP010000449         4085 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.241, whole genome shotgun sequence.
ACCESSION   DAJVUP010000449 DAJVUP010000000
VERSION     DAJVUP010000449.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4085
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.241"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(45..1060)
                     /locus_tag="OQQ75_004470"
                     /pseudo
     CDS             complement(45..1060)
                     /locus_tag="OQQ75_004470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            1455..2111
                     /locus_tag="OQQ75_004471"
     CDS             1455..2111
                     /locus_tag="OQQ75_004471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HCS1978537.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
     gene            complement(2430..2846)
                     /locus_tag="OQQ75_004472"
     CDS             complement(2430..2846)
                     /locus_tag="OQQ75_004472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001498886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1978538.1"
                     /translation="MDRLGRDLRHLINTVHDLTARGTGLKVLTGHGATIDTTTAAGKL
                     VFGIFAALAEFERELIAERTTAGLASARARGRNGGRPYKMTPVKLRLAMASMGQSETK
                     VSTLCQELGITRQTLYRHISPVGQLRADGIKLLNRG"
     gene            complement(2891..>4085)
                     /locus_tag="OQQ75_004473"
     CDS             complement(2891..>4085)
                     /locus_tag="OQQ75_004473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ISKra4 family transposase"
                     /protein_id="HCS1978539.1"
                     /translation="TKGCLIANFATVPQKIRYRTLFGVIPVSGLRVYRCRCEESDTKT
                     VSLLSDWAGDYSHPALKYIETRWASMISYEMTTRLLKDILPVGHSLNASTVRNHLCQV
                     AQRLDAEAEAHSGFLSGCPRDWGNLPRPGKPLVVGIDGGYVRDRDDKKRNFEIIAGKS
                     FSVGAPADTRRFGFVQKDDCHPERRLMTHLSAQGMQANQQIFFLSDGADNLRDLQFGM
                     YPESTHVLDWFHITMRLKVLMQYARGLLVSDPEAGSKVLALLESIKRYLWHGNVVAAL
                     EHIDNCVMYCDDPELSYPSLKSLQKHLDEMYTYIRNNKMMIPNYGEMRRYGEPVSTAF
                     VESTINEVIARRMAKKQQMQWSRKGAHYLLQTRTAVLNNELQDKFVCWYPGFQSDGKG
                     PAMAA"
BASE COUNT          976 a         1089 c          957 g         1063 t
ORIGIN      
        1 aacgtgagtt ttcgttccac tgagcgtcag acccctaaaa tcctgatgct gatgtagtcc
       61 cgttttatcg tcatcacgaa gctttctgct atgccattgc tttccgggct tcgcactgct
      121 gtcgtacaag gctccagtcc cagcaaccgg gcgaacgccg gcactgttgg caactgcctt
      181 ccgaagcgtt tttccaccgc acccagcatg acatcctgca ccgtttcttt gtcatagcct
      241 ccggtgctcg ctgcccagtc aatgatctcc ctgtcgcagc agtcctgcgc gaaggtcacc
      301 cgcagctttt cgccattatc acagcggaac tcaaagccat ctgagcacca gcgccggtta
      361 ctttccgcta ctgctacgcg ccccttatgg gcccgcttac ggcaaggatc agcgggttta
      421 cgttcaagaa gcagattatg cgttctcata atgcgataca cccgctttgc attaaccaca
      481 ggcaggccgt cccgctccga ctcccgtcgc agcagcgccc acacacggcg ataaccatac
      541 gtcggcaggt cagccaccgc catgtttatc cgggacaata cggtggtatc gtcagaacgg
      601 ggctgccgtc tgcgatcctg tcagtcagat ggccggtgaa cccgaatgct caactgcgca
      661 cgcgacacgc caagacttct gcaaacgtcg cttattcgtc gttcccaggc aacgagggcg
      721 catgcgcaat ccattttttt gcccggccga actccacggc ctctttgagt atctcggctt
      781 ccatcgtctt tttgcccaga aggcgctgga gttcgcgaat ttgcttattg gcggcagcga
      841 gttcggaggc cggcaccact tcctcgcccg atgcaacagc cgtcagtgaa ccgtcttaat
      901 attgcttgcg ccatttgaat atctggtttg cattgatgcc atgcaggcgc gcgacatgag
      961 acacggtcat accgggctcc atagtctgct gaataatggc aattttttcc tgcggtgtac
     1021 gacgccgacg ccgctcaggt cctgataaca cttcaaccat cttatcgttc tgactggtat
     1081 taaacatagt tccaagacta cctcttattt taagagagtc gaagtgtctg gtgatctatg
     1141 gggccagtct agccctcttc caagtgtagg gagatatagt caaagtttgc ttctccgccg
     1201 atgagtccgc cctgcgtcgg atagtccgat tttttaccgg cgaagcacgg ctctcctaac
     1261 cctatctaaa gcgaataact tttttcaaca gggccgcgtg ccaatgcaag agcgataggc
     1321 gctctacgcg ccaatttgac cacttaaaac aggtaaattg aggggttgta atgtgttgat
     1381 gtaacaggct tttattttaa tgtcttggca tatgtataat ggtagtctag ccctcctttc
     1441 aacaaggagt actcatggaa acctacaatc atacatatcg gcaccacaac ttttcacata
     1501 aagacttaag tgatctcacc ttcaccgctt gcacattcat tcgcagcgac tttcgacgtg
     1561 ctaacttgcg tgatacgaca ttcgtcaact gcaagttcat tgaacagggt gatatcgaag
     1621 gctgccactt tgatgtcgca gatcttcgtg atgcaagttt ccaacaatgc caacttgcga
     1681 tggcaaactt cagtaatgcc aattgctacg gtatagagtt ccgtgcgtgt gatttaaaag
     1741 gtgccaactt ttcccgaaca aactttgccc atcaagtgag taatcgtatg tacttttgct
     1801 cagcatttat ttctggatgt aatctttcct atgccaatat ggagagggtt tgtttagaaa
     1861 aatgtgagtt gtttgaaaat cgctggatag gaacgaacct agcgggtgca tcactgaaag
     1921 agtcagactt aagtcgaggt gttttttccg aagatgtctg ggggcaattt agcctacagg
     1981 gtgccaattt atgccacgcc gaactcgacg gtttagatcc ccgcaaagtc gatacatcag
     2041 gtatcaaaat tgcagcctgg cagcaagaac tgattctcga agcactgggt attgttgttt
     2101 atcctgacta attgctttga tgtgtgattt taaacgctca aatttataaa acgaataata
     2161 ttgtcaacct tgcaataata gacataggga caaccatgta taaattttta ccctcaggcg
     2221 tcttcacaat agagccatat agcagtgggt cacttagtgg gcttaatttt tccattaaag
     2281 ataatattaa tattgctcag tataaaacat catatggtag cccatcttgg caagtaaaca
     2341 taaggctgcc atttataagg cactgttgca aaaatgtgga ggtgataggg gtactacgcc
     2401 ggaaccccag atttttccgt ccgttcaaat tatccacggt tgagcagctt gatcccgtcc
     2461 gcccgcagtt gaccaacagg ggaaatatgc ctgtacaaag tttgccgggt tatcccaagt
     2521 tcctggcata gcgtactgac ctttgtttct gattgtccca ttgatgccat tgccagtcgc
     2581 agtttgactg gcgtcatttt ataaggtcgg ccgccgttcc gcccacgggc tcttgctgat
     2641 gccagacctg cagtcgttct ttcagcaatc agttcgcgct caaactccgc cagtgcggca
     2701 aagataccga agacaagctt gccagcggcc gttgttgtgt cgatagtcgc cccgtgaccg
     2761 gtcagcactt tcagaccggt ccccctcgcg gtcaggtcgt gcactgtatt aatgagatga
     2821 cgaagatcac gaccgaggcg gtccagcttc catacgaccg agagcataaa aaatattggg
     2881 gcagcgtgag ctatgctgcc atcgctggtc ccttcccgtc actttgaaaa cccggatacc
     2941 agcagacaaa tttatcctgc agttcgttat tcaaaacggc ggtccgggtc tgtaacaaat
     3001 aatgagcccc ttttctgctc cactgcatct gctgcttttt ggccattcgt ctggcgatca
     3061 cttcattgat cgtggattcc acaaacgcgg ttgataccgg ctctccgtac cgacgcattt
     3121 cgccgtagtt tgggatcatc atcttattat tccggatgta ggtatacatt tcatccagat
     3181 gtttttgcag ggatttcagg ctaggatagc tgagttcagg gtcatcgcaa tacataacgc
     3241 aattatcaat atgttccagc gcagcgacaa cattgccatg ccagagatat cgtttaatgc
     3301 tttccagcag tgccagaact ttactccccg cctctggatc tgataccagc agtccccggg
     3361 catattgcat gagcaccttc agcctcatgg tgatatgaaa ccagtccagc acatgcgttg
     3421 actcagggta cataccgaac tggaggtccc tgagattatc cgcgccgtcg gacagaaaaa
     3481 atatctgctg gttggcctgc attccctgcg ctgaaaggtg ggtcatgagc ctgcgttccg
     3541 gatgacagtc atccttctga acaaaaccga agcggcgggt gtcagcaggc gcaccaacgg
     3601 aaaaagactt cccggcaata atttcaaaat tacgcttttt gtcatcccga tcgcgaacat
     3661 aaccaccatc tatacccacc acaagcggtt ttcctggcct gggcaggttc ccccagtcgc
     3721 gggggcagcc ggaaagaaaa cctgaatgag cttcagcctc agcgtcaaga cgctgcgcca
     3781 cctggcataa atgattcctc accgttgagg cattcaggct gtggcccacc ggcagaatat
     3841 ctttcagcag acgagtcgtc atttcatagg agatcatcga ggcccagcgg gtttcaatat
     3901 atttcagtgc cgggtgagaa taatcgccgg cccagtcgct gagcaaactg actgtctttg
     3961 tatcactctc ttcacaacgg caccggtaca cccgaagccc ggataccgga ataacgccaa
     4021 acagcgtccg gtaccgtatt ttctgtggca ctgttgcaaa gttagcgatg aggcagcctt
     4081 ttgtc
//
LOCUS       DAJVUP010000450         4042 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.243, whole genome shotgun sequence.
ACCESSION   DAJVUP010000450 DAJVUP010000000
VERSION     DAJVUP010000450.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.243"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..313
                     /locus_tag="OQQ75_004474"
     CDS             <1..313
                     /locus_tag="OQQ75_004474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000521550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HCS1978540.1"
                     /translation="SWIVQPVANEKTLHSLAHGAGRKWGRTECKWRLAAKYTVTQLSR
                     TELGSRIICRDKQLIFEEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLKNSGGKK
                     G"
     gene            310..924
                     /locus_tag="OQQ75_004475"
     CDS             310..924
                     /locus_tag="OQQ75_004475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS1978541.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(981..2438)
                     /gene="pepD"
                     /locus_tag="OQQ75_004476"
     CDS             complement(981..2438)
                     /gene="pepD"
                     /locus_tag="OQQ75_004476"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1978542.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            2699..3157
                     /gene="gpt"
                     /locus_tag="OQQ75_004477"
     CDS             2699..3157
                     /gene="gpt"
                     /locus_tag="OQQ75_004477"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1978543.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3249..>4042
                     /gene="frsA"
                     /locus_tag="OQQ75_004478"
     CDS             3249..>4042
                     /gene="frsA"
                     /locus_tag="OQQ75_004478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS1978544.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHT"
BASE COUNT          971 a         1022 c         1080 g          969 t
ORIGIN      
        1 ctcctggatt gtacagcctg ttgcgaacga aaaaacgctc cactcgctgg cgcatggggc
       61 agggcgtaaa tgggggcgca ccgagtgtaa atggcgtctg gcagcgaaat acacggtgac
      121 gcaactctcg cggactgaac ttggcagtcg gataatttgt cgcgataaac aactcatctt
      181 tgaagaagcg ccacaagcct ataaatcggc tgaaagcgtg gtgcaatgtc tggtgcaggc
      241 cggtttaatt attcctgtcg cgcggctgcg tccggtgcta acgctcaaaa acagtggagg
      301 gaaaaaagga tgatcttgct acaactctcc tcagcgcagg ggccggaaga atgttgtctc
      361 gcagtgaaaa aggcgctgga caggctaatt aaagaagctg cccgacaaga cgtcgcggta
      421 acggtgttgg aaacagaaac gggccgctac tctgacacgc tgcgttcagc tctggtttct
      481 ctggatggcg ataacgcatg ggcattaagc gaaagctggt gtggcactat tcagtggatt
      541 tgtccgagtc cgtatcggcc tcatcatggg cgcaaaaact ggtttctggg cattgggcgt
      601 tttaccgctg atgagcagga gcaatccgat gcgatccggt atgagacgct gcgttcgtcg
      661 gggccgggcg gtcaacatgt caataaaacc gactcggcgg tacgcgccac gcatttggca
      721 tccggtatta gcgtgaaggt tcagtcagag cgtagtcagc atgctaacaa gcggctggca
      781 cgattgctga ttgcctggaa gctggagcag cagcaacagg aaaatagcgc ggtgctgaaa
      841 tcgcagcggc gaatgttcca tcaccagatt gaacgtggca acccgagacg gacatttaca
      901 gggatggctt ttatcgaagg ataatgaagg atgaaactgc cggaaggcga ttaaacgcca
      961 tccggcagca aatcaaataa ttacttcgcc ggaatttctt tcagcagttc agtcagcagt
     1021 gtccagtaat gacctacgct ttcgatgtga acttgctcat ccggagagtg tggaccggtg
     1081 atagttggcc cgatagaaac catgtccatt tccggatacg gttttttgaa cagaccacat
     1141 tccaggcccg cgtggataat ctggatgttc ggcgtcttgt tgaacaggcg ctgataggtt
     1201 tcacgtacca gatgcatcac cggagaatta gcgtccggct gccagccagg atatgcgcct
     1261 ttcgcttcgg ttttcgcgcc agccagttta cccagcgaat ccagcatgct caccacgtag
     1321 tctttaccgc tgtcgatcag tgaacggatc aggcagtgaa tttctacgtt attgtcagtc
     1381 atggtcacca caccgacgtt cagggaggtt tcaaccacac ctttggctac atcggagttg
     1441 cggatcacac cgttcggggt ggcgttcagc agacgaataa aggtatcgcg agatttcgca
     1501 atcagggcag ctttatcgtt cgctacagag tccagcaaca aggccagatt tttctctttc
     1561 tctgccagct cgtttttcag gatctcctga taggtattca ccagagattt cagtgcgtcg
     1621 actttatcag ctgcgacagc aatggtcgca aaggcttcac gcgggatggc gttacgcagt
     1681 gtgccgccgt tgaaatcgat aaggcgcagg tccagttctt ctgcatgacc cgccaggaag
     1741 cgcaccagca gtttgttggc attacccagg ccaacgtgga tttcaccgcc ggagtgaccg
     1801 cctttcagac cttttaaggt taacttgaag gtttcaaaac cagctggaac cgcttcacga
     1861 tctaaatgca ggttggaggt gaagtcgata ccccccgcac aacccatgta gatttcacct
     1921 tcttcttcgg agtcggtgtt aatcagaata tcagcctgca accagttgct ctgtaagcca
     1981 aaagcaccgt ccataccggc ttcttcggtc atggtcagca gcacttccag cggaccgtga
     2041 accacgtttt cgtcagccag aaccgccagt gcagaggcca taccaatgcc gttatccgca
     2101 cccagcgtgg tgccgcgcgc tttaacccat tcgccatcaa tataaggctg gataggatct
     2161 ttcgtgaagt catgcacggt gtcgttattt ttctgcggca ccatatcgag gtgggcctgt
     2221 aagacgaccg gtttacgatt ttccatacct gcggtagcag gtttacgaat caggatatta
     2281 cctacctgat cgcgttcgac atggaaacct ttctcttttg cccaaccaac aatgtattca
     2341 gcgagttgct cttcatgata ggacgggtgc ggaatagaac agattttggc aaaaatatcc
     2401 cacagcggct gtggagataa ttgagacagt tcagacacgt taagtctcct tgtcgatcac
     2461 ccgcaaaaca gtattgcagg tcacagggtt agcagaaaat gttgtcaaca caagacaggc
     2521 ttgcgagata tgtttgagaa taccacttta tcccgcgtca gggagaggca gtgcgtaaaa
     2581 agacgcggac tcatgtgaaa tactggtttt tagtgcgcca gatctctata atctcgcgca
     2641 acctattttc ccctcgaaca ctttttaagc cgtagataaa caggctggga cacttcacat
     2701 gagcgaaaaa tacatcgtca cctgggacat gttgcagatc catgcacgta aactcgcaag
     2761 ccgactgatg ccttctgaac aatggaaagg cattattgcc gtaagccgtg gcggtctggt
     2821 accgggtgcg ttactggcgc gtgaactggg tattcgtcat gtcgataccg tttgtatttc
     2881 cagctacgat cacgacaacc agcgagagct taaagtgctg aaacgcgcag aaggcgatgg
     2941 cgaaggcttc atagttattg atgacctggt ggataccggt ggtactgctg ttgcgattcg
     3001 tgaaatgtat ccaaaagcgc actttgtcac catcttcgca aaaccggctg gtcgtccgct
     3061 ggttgatgac tatgttgttg atattccgca agatacctgg atcgaacagc cgtgggatat
     3121 gggcgtcgta ttcgtcccgc caatctccgg tcgctaatct tttcaacgcc tggcactgcc
     3181 gggcgttgtt ctttttaact tcaggcaggt tacaatagtt tccagtaagt attctggagg
     3241 ctgcatccat gacacaggca aacctgagcg aaaccctgtt caaaccccgc tttaaacatc
     3301 ctgaaacctc gacgctagtc cgccgcttta atcacggcgc acaaccgcct gtgcagtcgg
     3361 ctcttgatgg taaaaccatc cctcactggt atcgcatgat taaccgtctg atgtggatct
     3421 ggcgcggtat tgacccacgt gaaatcctcg acgtccaggc acgtattgtg atgagcgatg
     3481 ctgaacgtac cgacgatgat ttatacgata ctgtgattgg ctaccgtggt ggcaactgga
     3541 tttatgagtg ggccacccag gcgatggtgt ggcaacaaaa agcctgtgcg gaagaagatc
     3601 cgcaactcag tggtcgacac tggctgcatg cggctacgtt gtacaacatt gccgcctatc
     3661 ctcatctgaa aggagatgac ctggccgagc aagcgcaggc tttatcaaac cgcgcctatg
     3721 aagaggccgc ccagcgtctg ccgggcacga tgcggcagat ggagtttacc gtacccggcg
     3781 gtgcgcccat caccggcttt ttgcatatgc cgaaaggcga tggcccgttc ccgacagtat
     3841 taatgtgtgg tggtctggat gcgatgcaga cggactatta cagcctgtat gaacgttatt
     3901 ttgcgccgcg cggcattgtg atgctgacta ttgatatgcc gtcggtgggc ttttcttcaa
     3961 aatggaagct cacccaggac tccagcctgt tgcatcagca cgtcttaaag gcgctgccta
     4021 acgtaccgtg ggtggatcac ac
//
LOCUS       DAJVUP010000451         3719 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.252, whole genome shotgun sequence.
ACCESSION   DAJVUP010000451 DAJVUP010000000
VERSION     DAJVUP010000451.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.252"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(76..726)
                     /gene="tetR(A)"
                     /locus_tag="OQQ75_004479"
     CDS             complement(76..726)
                     /gene="tetR(A)"
                     /locus_tag="OQQ75_004479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(A)"
                     /protein_id="HCS1978545.1"
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWH
                     FRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAG
                     TRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGG
                     TVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
     gene            832..2031
                     /gene="tet(A)"
                     /locus_tag="OQQ75_004480"
     CDS             832..2031
                     /gene="tet(A)"
                     /locus_tag="OQQ75_004480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(A)"
                     /protein_id="HCS1978546.1"
                     /translation="MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH
                     YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG
                     RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
                     APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV
                     FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE
                     RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG
                     QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSG
                     AGQRADR"
     gene            complement(2063..2947)
                     /locus_tag="OQQ75_004481"
     CDS             complement(2063..2947)
                     /locus_tag="OQQ75_004481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCS1978547.1"
                     /translation="MSLRTPDLLFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALP
                     AGLLLVMIVRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLM
                     VVFISAALLGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGT
                     VLTRKWQPPVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAG
                     LTYFLWFRGISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWL
                     GQRSNRTPRARIACRKSP"
     gene            complement(3085..3492)
                     /locus_tag="OQQ75_004482"
     CDS             complement(3085..3492)
                     /locus_tag="OQQ75_004482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001501368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HCS1978548.1"
                     /translation="MRGRPVLFPNFSLGEEYEHAPPATNRQISPYLPSGRFRTGLPVE
                     GLAIERGDLFYACPRASVFYGTALDADLRTRGVSTLVMAGISTTGVVLSSVAWASDAD
                     YDVRLVQDCCYDPDRDAHEALLRSGFGGRVQVV"
     gene            3481..3719
                     /locus_tag="OQQ75_004483"
                     /pseudo
     CDS             3481..3719
                     /locus_tag="OQQ75_004483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          711 a         1169 c         1135 g          704 t
ORIGIN      
        1 ggtggaaagg gggaggggat gttgtctaca tggctctgct gtagtgagtg ggttgcgctc
       61 cggcagcggt cctgatcaat cgtcaccctt tctcggtcct tcaacgttcc tgacaacgag
      121 cctccttttc gccaatccat cgacaatcac cgcgagtccc tgctcgaacg ctgcgtccgg
      181 accggcttcg tcgaaggcgt ctatcgcggc ccgcaacagc ggcgagagcg gagcctgttc
      241 aacggtgccg ccgcgctcgc cggcatcgct gtcgccggcc tgctcctcaa gcacggcccc
      301 aacagtgaag tagctgattg tcatcagcgc attgacggcg tccccggccg aaaaacccgc
      361 ctcgcagagg aagcgaagct gcgcgtcggc cgtttccatc tgcggtgcgc ccggtcgcgt
      421 gccggcatgg atgcgcgcgc catcgcggta ggcgagcagc gcctgcctga agctgcgggc
      481 attcccgatc agaaatgagc gccagtcgtc gtcggctctc ggcaccgaat gcgtatgatt
      541 ctccgccagc atggcttcgg ccagtgcgtc gagcagcgcc cgcttgttcc tgaagtgcca
      601 gtaaagcgcc ggctgctgaa cccccaaccg ttccgccagt ttgcgtgtcg tcagaccgtc
      661 tacgccgacc tcgttcaaca ggtccagggc ggcacggatc actgtattcg gctgcaactt
      721 tgtcatgctt gacactttat cactgataaa cataatatgt ccaccaactt atcagtgata
      781 aagaatccgc gcgttcaatc ggaccagcgg aggctggtcc ggaggccaga cgtgaaaccc
      841 aacagacccc tgatcgtaat tctgagcact gtcgcgctcg acgctgtcgg catcggcctg
      901 attatgccgg tgctgccggg cctcctgcgc gatctggttc actcgaacga cgtcaccgcc
      961 cactatggca ttctgctggc gctgtatgcg ttgatgcaat ttgcctgcgc acctgtgctg
     1021 ggcgcgctgt cggatcgttt cgggcggcgg ccggtcttgc tcgtctcgct ggccggcgct
     1081 gctgtcgact acgccatcat ggcgacggcg cctttccttt gggttctcta tatcgggcgg
     1141 atcgtggccg gcatcaccgg ggcgactggg gcggtagccg gcgcttatat tgccgatatc
     1201 actgatggcg atgagcgcgc gcggcacttc ggcttcatga gcgcctgttt cgggttcggg
     1261 atggtcgcgg gacctgtgct cggtgggctg atgggcggtt tctcccccca cgctccgttc
     1321 ttcgccgcgg cagccttgaa cggcctcaat ttcctgacgg gctgtttcct tttgccggag
     1381 tcgcacaaag gcgaacgccg gccgttacgc cgggaggctc tcaacccgct cgcttcgttc
     1441 cggtgggccc ggggcatgac cgtcgtcgcc gccctgatgg cggtcttctt catcatgcaa
     1501 cttgtcggac aggtgccggc cgcgctttgg gtcattttcg gcgaggatcg ctttcactgg
     1561 gacgcgacca cgatcggcat ttcgcttgcc gcatttggca ttctgcattc actcgcccag
     1621 gcaatgatca ccggccctgt agccgcccgg ctcggcgaaa ggcgggcact catgctcgga
     1681 atgattgccg acggcacagg ctacatcctg cttgccttcg cgacacgggg atggatggcg
     1741 ttcccgatca tggtcctgct tgcttcgggt ggcatcggaa tgccggcgct gcaagcaatg
     1801 ttgtccaggc aggtggatga ggaacgtcag gggcagctgc aaggctcact ggcggcgctc
     1861 accagcctga cctcgatcgt cggacccctc ctcttcacgg cgatctatgc ggcttctata
     1921 acaacgtgga acggatgggc atggattgca ggcgctgccc tctacttgct ctgcctgccg
     1981 gcgctgcgtc gcgggctttg gagcggcgca gggcaacgag ccgatcgctg atcgtggaaa
     2041 cgataggcct atgccatgcg ggtcaaggcg acttccggca agctatacgc gccctaggag
     2101 tgcggttgga acgttggccc agccagatac tcccgatcac gagcaggacg ccgatgattt
     2161 gaagcgcact cagcgtctga tccaagaaca accatcctag caacacggcg gtccccgggc
     2221 tgagaaagcc cagtaaggaa acaactgtag gttcgagtcg cgagatcccc cggaaccaaa
     2281 ggaagtaggt taaacccgct ccgatcaggc cgagccacgc caggccgaga acattggttc
     2341 ctgtaggcat cgggattggc ggatcaaaca ctaaagctac tggaacgagc agaagtcctc
     2401 cggccgccag ttgccaggcg gtaaaggtga gcagaggcac gggaggttgc cacttgcggg
     2461 tcagcacggt tccgaacgcc atggaaaccg cccccgccag gcccgctgcg acgccgacag
     2521 gatctagcgc tgcgtttggt gtcaacacca acagcgccac gcccgcagtt ccgcaaatag
     2581 cccccaggac cgccatcaat cgtatcgggc tacctagcag agcggcagag atgaacacga
     2641 ccatcagcgg ctgcacagcg cctaccgtcg ccgcgacccc gcccggcagg cggtagaccg
     2701 aaataaacaa caagctccag aatagcgaaa tattaagtgc gccgaggatg aagatgcgca
     2761 tccaccagat tcccgttgga atctgtcgga cgatcatcac gagcaataaa cccgccggca
     2821 acgcccgcag catcgcgacc gtcatcggtg agaagttcgg caggtattgg gtggtgacaa
     2881 tgtaggtgct gccccaaatg gcaggtgcta tcgctgtgaa caataaatcg ggcgtgcgta
     2941 atgacatgcg attacaagac ctccgctacg gcgatgggtt tttgagagtt gcaggcgccg
     3001 cgatgaccgc accctgactt ggactggccc tgcctcgcac caatccacct gcggctatgg
     3061 ccgcgatcat gcgaggcccg aaaattacac gacctgtaca cgtccgccga acccggaacg
     3121 caacagagct tcgtgggcat cccgatccgg gtcgtagcag cagtcctgga ccaaacgcac
     3181 gtcgtagtcc gcatcactag cccaggcgac gcttgaaaga acaacgccgg tggtgcttat
     3241 cccggccatg acaagcgtgc ttacgccgcg cgtccgaagg tcggcgtcga gcgccgtgcc
     3301 ataaaagacg ctggctcgcg gacatgcata gaaaaggtcg ccccgttcga tcgcaagccc
     3361 ttcgacgggc agaccggtgc gaaatcgtcc gctcgggaga tacggtgaga tttggcgatt
     3421 cgtcgccggc ggcgcatgtt catactcttc gccgagcgaa aagttgggga acagcacggg
     3481 ccggccgcgc aaggcgtgct ggcagccgtg cagaccctgc gtgagatgaa cgccgacaac
     3541 ctgcgcaagg tgccggccga tgcacccacg gccttcatca agccgcgctg gaagccgctg
     3601 gtgatcaccc cggaaggcct cgaccggaaa ttctacgaaa tctgcgccct gtccgagctg
     3661 aagaacgccc tgcgctccgg cgacatctgg gtcaagggct cgcggcagtt ccgcgactt
//
LOCUS       DAJVUP010000452         3719 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.253, whole genome shotgun sequence.
ACCESSION   DAJVUP010000452 DAJVUP010000000
VERSION     DAJVUP010000452.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.253"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(76..726)
                     /gene="tetR(A)"
                     /locus_tag="OQQ75_004484"
     CDS             complement(76..726)
                     /gene="tetR(A)"
                     /locus_tag="OQQ75_004484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(A)"
                     /protein_id="HCS1978549.1"
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWH
                     FRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAG
                     TRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGG
                     TVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
     gene            832..2031
                     /gene="tet(A)"
                     /locus_tag="OQQ75_004485"
     CDS             832..2031
                     /gene="tet(A)"
                     /locus_tag="OQQ75_004485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(A)"
                     /protein_id="HCS1978550.1"
                     /translation="MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH
                     YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG
                     RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
                     APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV
                     FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE
                     RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG
                     QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSG
                     AGQRADR"
     gene            complement(2063..2947)
                     /locus_tag="OQQ75_004486"
     CDS             complement(2063..2947)
                     /locus_tag="OQQ75_004486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCS1978551.1"
                     /translation="MSLRTPDLLFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALP
                     AGLLLVMIVRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLM
                     VVFISAALLGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGT
                     VLTRKWQPPVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAG
                     LTYFLWFRGISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWL
                     GQRSNRTPRARIACRKSP"
     gene            complement(3085..3492)
                     /locus_tag="OQQ75_004487"
     CDS             complement(3085..3492)
                     /locus_tag="OQQ75_004487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001501368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HCS1978552.1"
                     /translation="MRGRPVLFPNFSLGEEYEHAPPATNRQISPYLPSGRFRTGLPVE
                     GLAIERGDLFYACPRASVFYGTALDADLRTRGVSTLVMAGISTTGVVLSSVAWASDAD
                     YDVRLVQDCCYDPDRDAHEALLRSGFGGRVQVV"
     gene            3481..3719
                     /locus_tag="OQQ75_004488"
                     /pseudo
     CDS             3481..3719
                     /locus_tag="OQQ75_004488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          710 a         1169 c         1136 g          704 t
ORIGIN      
        1 ggtggaaagg gggaggggat gttgtctaca tggctctgct gtagtgagtg ggttgcgctc
       61 cggcagcggt cctgatcaat cgtcaccctt tctcggtcct tcaacgttcc tgacaacgag
      121 cctccttttc gccaatccat cgacaatcac cgcgagtccc tgctcgaacg ctgcgtccgg
      181 accggcttcg tcgaaggcgt ctatcgcggc ccgcaacagc ggcgagagcg gagcctgttc
      241 aacggtgccg ccgcgctcgc cggcatcgct gtcgccggcc tgctcctcaa gcacggcccc
      301 aacagtgaag tagctgattg tcatcagcgc attgacggcg tccccggccg aaaaacccgc
      361 ctcgcagagg aagcgaagct gcgcgtcggc cgtttccatc tgcggtgcgc ccggtcgcgt
      421 gccggcatgg atgcgcgcgc catcgcggta ggcgagcagc gcctgcctga agctgcgggc
      481 attcccgatc agaaatgagc gccagtcgtc gtcggctctc ggcaccgaat gcgtatgatt
      541 ctccgccagc atggcttcgg ccagtgcgtc gagcagcgcc cgcttgttcc tgaagtgcca
      601 gtaaagcgcc ggctgctgaa cccccaaccg ttccgccagt ttgcgtgtcg tcagaccgtc
      661 tacgccgacc tcgttcaaca ggtccagggc ggcacggatc actgtattcg gctgcaactt
      721 tgtcatgctt gacactttat cactgataaa cataatatgt ccaccaactt atcagtgata
      781 aagaatccgc gcgttcaatc ggaccagcgg aggctggtcc ggaggccaga cgtgaaaccc
      841 aacagacccc tgatcgtaat tctgagcact gtcgcgctcg acgctgtcgg catcggcctg
      901 attatgccgg tgctgccggg cctcctgcgc gatctggttc actcgaacga cgtcaccgcc
      961 cactatggca ttctgctggc gctgtatgcg ttgatgcaat ttgcctgcgc acctgtgctg
     1021 ggcgcgctgt cggatcgttt cgggcggcgg ccggtcttgc tcgtctcgct ggccggcgct
     1081 gctgtcgact acgccatcat ggcgacggcg cctttccttt gggttctcta tatcgggcgg
     1141 atcgtggccg gcatcaccgg ggcgactggg gcggtagccg gcgcttatat tgccgatatc
     1201 actgatggcg atgagcgcgc gcggcacttc ggcttcatga gcgcctgttt cgggttcggg
     1261 atggtcgcgg gacctgtgct cggtgggctg atgggcggtt tctcccccca cgctccgttc
     1321 ttcgccgcgg cagccttgaa cggcctcaat ttcctgacgg gctgtttcct tttgccggag
     1381 tcgcacaaag gcgaacgccg gccgttacgc cgggaggctc tcaacccgct cgcttcgttc
     1441 cggtgggccc ggggcatgac cgtcgtcgcc gccctgatgg cggtcttctt catcatgcaa
     1501 cttgtcggac aggtgccggc cgcgctttgg gtcattttcg gcgaggatcg ctttcactgg
     1561 gacgcgacca cgatcggcat ttcgcttgcc gcatttggca ttctgcattc actcgcccag
     1621 gcaatgatca ccggccctgt agccgcccgg ctcggcgaaa ggcgggcact catgctcgga
     1681 atgattgccg acggcacagg ctacatcctg cttgccttcg cgacacgggg atggatggcg
     1741 ttcccgatca tggtcctgct tgcttcgggt ggcatcggaa tgccggcgct gcaagcaatg
     1801 ttgtccaggc aggtggatga ggaacgtcag gggcagctgc aaggctcact ggcggcgctc
     1861 accagcctga cctcgatcgt cggacccctc ctcttcacgg cgatctatgc ggcttctata
     1921 acaacgtgga acgggtgggc atggattgca ggcgctgccc tctacttgct ctgcctgccg
     1981 gcgctgcgtc gcgggctttg gagcggcgca gggcaacgag ccgatcgctg atcgtggaaa
     2041 cgataggcct atgccatgcg ggtcaaggcg acttccggca agctatacgc gccctaggag
     2101 tgcggttgga acgttggccc agccagatac tcccgatcac gagcaggacg ccgatgattt
     2161 gaagcgcact cagcgtctga tccaagaaca accatcctag caacacggcg gtccccgggc
     2221 tgagaaagcc cagtaaggaa acaactgtag gttcgagtcg cgagatcccc cggaaccaaa
     2281 ggaagtaggt taaacccgct ccgatcaggc cgagccacgc caggccgaga acattggttc
     2341 ctgtaggcat cgggattggc ggatcaaaca ctaaagctac tggaacgagc agaagtcctc
     2401 cggccgccag ttgccaggcg gtaaaggtga gcagaggcac gggaggttgc cacttgcggg
     2461 tcagcacggt tccgaacgcc atggaaaccg cccccgccag gcccgctgcg acgccgacag
     2521 gatctagcgc tgcgtttggt gtcaacacca acagcgccac gcccgcagtt ccgcaaatag
     2581 cccccaggac cgccatcaat cgtatcgggc tacctagcag agcggcagag atgaacacga
     2641 ccatcagcgg ctgcacagcg cctaccgtcg ccgcgacccc gcccggcagg cggtagaccg
     2701 aaataaacaa caagctccag aatagcgaaa tattaagtgc gccgaggatg aagatgcgca
     2761 tccaccagat tcccgttgga atctgtcgga cgatcatcac gagcaataaa cccgccggca
     2821 acgcccgcag catcgcgacc gtcatcggtg agaagttcgg caggtattgg gtggtgacaa
     2881 tgtaggtgct gccccaaatg gcaggtgcta tcgctgtgaa caataaatcg ggcgtgcgta
     2941 atgacatgcg attacaagac ctccgctacg gcgatgggtt tttgagagtt gcaggcgccg
     3001 cgatgaccgc accctgactt ggactggccc tgcctcgcac caatccacct gcggctatgg
     3061 ccgcgatcat gcgaggcccg aaaattacac gacctgtaca cgtccgccga acccggaacg
     3121 caacagagct tcgtgggcat cccgatccgg gtcgtagcag cagtcctgga ccaaacgcac
     3181 gtcgtagtcc gcatcactag cccaggcgac gcttgaaaga acaacgccgg tggtgcttat
     3241 cccggccatg acaagcgtgc ttacgccgcg cgtccgaagg tcggcgtcga gcgccgtgcc
     3301 ataaaagacg ctggctcgcg gacatgcata gaaaaggtcg ccccgttcga tcgcaagccc
     3361 ttcgacgggc agaccggtgc gaaatcgtcc gctcgggaga tacggtgaga tttggcgatt
     3421 cgtcgccggc ggcgcatgtt catactcttc gccgagcgaa aagttgggga acagcacggg
     3481 ccggccgcgc aaggcgtgct ggcagccgtg cagaccctgc gtgagatgaa cgccgacaac
     3541 ctgcgcaagg tgccggccga tgcacccacg gccttcatca agccgcgctg gaagccgctg
     3601 gtgatcaccc cggaaggcct cgaccggaaa ttctacgaaa tctgcgccct gtccgagctg
     3661 aagaacgccc tgcgctccgg cgacatctgg gtcaagggct cgcggcagtt ccgcgactt
//
LOCUS       DAJVUP010000453         3595 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.255, whole genome shotgun sequence.
ACCESSION   DAJVUP010000453 DAJVUP010000000
VERSION     DAJVUP010000453.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.255"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(<1..142)
                     /locus_tag="OQQ75_004489"
     CDS             complement(<1..142)
                     /locus_tag="OQQ75_004489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HCS1978553.1"
                     /translation="MLTDTKLRNLKPRDKLYKVNDREGLYVGVASENGIYGHSRFCNT
                     DFD"
     gene            472..1287
                     /gene="sul2"
                     /locus_tag="OQQ75_004490"
     CDS             472..1287
                     /gene="sul2"
                     /locus_tag="OQQ75_004490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HCS1978554.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            1348..2151
                     /locus_tag="OQQ75_004491"
                     /note="aph(3'')-Ib"
     CDS             1348..2151
                     /locus_tag="OQQ75_004491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HCS1978555.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            2151..2987
                     /locus_tag="OQQ75_004492"
     CDS             2151..2987
                     /locus_tag="OQQ75_004492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HCS1978556.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(3094..3498)
                     /locus_tag="OQQ75_004493"
                     /pseudo
     CDS             complement(3094..3498)
                     /locus_tag="OQQ75_004493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
BASE COUNT          746 a         1009 c          988 g          852 t
ORIGIN      
        1 cgtcaaaatc ggtgttgcaa aaacgggagt gaccatagat tccgttttct gaggcgaccc
       61 ccacatagag accttcccgg tcattcactt tgtagagttt gtccctgggc ttgagattgc
      121 gcagcttggt atcggtcagc atgtaccttg tccttcttcg tctccgatac ccactctatt
      181 gtaaacaaga catttttatc ttttatattc aatggcttat tttcctgcta attggtaata
      241 ccatgaaaaa taccatgctc agaaaaggct taacaatatt ttgaaaaatt gcctactgag
      301 cgctgccgca cagctccata ggccgctttc ctggctttgc ttccagatgt atgctattct
      361 gctcctgcag ctaatggagc accgcaaaca ggttactcgc ctggggattc cctttcgacc
      421 cgagcatccg tatgagactc atgctcgatt attattatta tagaagcccc catgaataaa
      481 tcgctcatca ttttcggcat cgtcaacata acctcggaca gtttctccga tggaggccgg
      541 tatctggcgc cagacgcagc cattgcgcag gcgcgtaagc tgatggccga gggggcagat
      601 gtgatcgacc tcggtccggc atccagcaat cccgacgccg cgcctgtttc gtccgacaca
      661 gaaatcgcgc gtatcgcgcc ggtgctggac gcgctcaagg cagatggcat tcccgtctcg
      721 ctcgacagtt atcaacccgc gacgcaagcc tatgccttgt cgcgtggtgt ggcctatctc
      781 aatgatattc gcggttttcc agacgctgcg ttctatccgc aattggcgaa atcatctgcc
      841 aaactcgtcg ttatgcattc ggtgcaagac gggcaggcag atcggcgcga ggcacccgct
      901 ggcgacatca tggatcacat tgcggcgttc tttgacgcgc gcatcgcggc gctgacgggt
      961 gccggtatca aacgcaaccg ccttgtcctt gatcccggca tggggttttt tctgggggct
     1021 gctcccgaaa cctcgctctc ggtgctggcg cggttcgatg aattgcggct gcgcttcgat
     1081 ttgccggtgc ttctgtctgt ttcgcgcaaa tcctttctgc gcgcgctcac aggccgtggt
     1141 ccgggggatg tcggggccgc gacactcgct gcagagcttg ccgccgccgc aggtggagct
     1201 gacttcatcc gcacacacga gccgcgcccc ttgcgcgacg ggctggcggt attggcggcg
     1261 ctgaaagaaa ccgcaagaat tcgttaactg cacattcggg atatttctct atattcgcgc
     1321 ttcatcagaa aactgaagga acctccattg aatcgaacta atattttttt tggtgaatcg
     1381 cattctgact ggttgcctgt cagaggcgga gaatctggtg attttgtttt tcgacgtggt
     1441 gacgggcatg ccttcgcgaa aatcgcacct gcttcccgcc gcggtgagct cgctggagag
     1501 cgtgaccgcc tcatttggct caaaggtcga ggtgtggctt gccccgaggt catcaactgg
     1561 caggaggaac aggagggtgc atgcttggtg ataacggcaa ttccgggagt accggcggct
     1621 gatctgtctg gagcggattt gctcaaagcg tggccgtcaa tggggcagca acttggcgct
     1681 gttcacagcc tatcggttga tcaatgtccg tttgagcgca ggctgtcgcg aatgttcgga
     1741 cgcgccgttg atgtggtgtc ccgcaatgcc gtcaatcccg acttcttacc ggacgaggac
     1801 aagagtacgc cgcagctcga tcttttggct cgtgtcgaac gagagctacc ggtgcggctc
     1861 gaccaagagc gcaccgatat ggttgtttgc catggtgatc cctgcatgcc gaacttcatg
     1921 gtggacccta aaactcttca atgcacgggt ctgatcgacc ttgggcggct cggaacagca
     1981 gatcgctatg ccgatttggc actcatgatt gctaacgccg aagagaactg ggcagcgcca
     2041 gatgaagcag agcgcgcctt cgctgtccta ttcaatgtat tggggatcga agcccccgac
     2101 cgcgaacgcc ttgccttcta tctgcgattg gaccctctga cttggggttg atgttcatgc
     2161 cgcctgtttt tcctgctcat tggcacgttt cgcaacctgt tctcattgcg gacacctttt
     2221 ccagcctcgt ttggaaagtt tcattgccag acgggactcc tgcaatcgtc aagggattga
     2281 aacctataga agacattgct gatgaactgc gcggggccga ctatctggta tggcgcaatg
     2341 ggaggggagc agtccggttg ctcggtcgtg agaacaatct gatgttgctc gaatatgccg
     2401 gggagcgaat gctctctcac atcgttgccg agcacggcga ctaccaggcg accgaaattg
     2461 cagcggaact aatggcgaag ctgtatgccg catctgagga acccctgcct tctgcccttc
     2521 tcccgatccg ggatcgcttt gcagctttgt ttcagcgggc gcgcgatgat caaaacgcag
     2581 gttgtcaaac tgactacgtc cacgcggcga ttatagccga tcaaatgatg agcaatgcct
     2641 cggaactgcg tgggctacat ggcgatctgc atcatgaaaa catcatgttc tccagtcgcg
     2701 gctggctggt gatagatccc gtcggtctgg tcggtgaagt gggctttggc gccgccaata
     2761 tgttctacga tccggctgac agagacgacc tttgtctcga tcctagacgc attgcacaga
     2821 tggcggacgc attctctcgt gcgctggacg tcgatccgcg tcgcctgctc gaccaggcgt
     2881 acgcttatgg gtgcctttcc gcagcttgga acgcggatgg agaagaggag caacgcgatc
     2941 tagctatcgc ggccgcgatc aagcaggtgc gacagacgtc atactagata tcaagcgact
     3001 tctcctatcc cctgggaaca catcaatctc accggagaat atcgctggcc aaagccttag
     3061 cgtaggattc cgccccttcc cgcaaacgac cccaaacagg aaacgcagct gaaacgggaa
     3121 gctcaacacc cactgacgca tgggttgttc aggcagtact tcatcaacca gcaaggcggc
     3181 actttcggcc atccgccgcg ccccacagct cgggcagaaa ccgcgacgct tacagctgaa
     3241 agcgaccagg tgctcggcgt ggcaagactc gcagcgaacc cgtagaaagc catgctccag
     3301 ccgcccgcat tggagaaatt cttcaaattc ccgttgcaca tagcccggca attcctttcc
     3361 ctgctctgcc ataagcgcag cgaatgccgg gtaatactcg tcaacgatct gatagagaag
     3421 ggtttgctcg ggtcggtggc tctggtaacg accagtatcc cgatcccggc tggccgtcct
     3481 ggccgccaca tgaggcatgt tccgcgtcct tgcaatactg tgtttacata cagtctatcg
     3541 cttagcggaa agttctttta ggggtctgac gctcagtgga acgaaaactc acgtt
//
LOCUS       DAJVUP010000454         3494 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.262, whole genome shotgun sequence.
ACCESSION   DAJVUP010000454 DAJVUP010000000
VERSION     DAJVUP010000454.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3494
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.262"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            <1..281
                     /locus_tag="OQQ75_004494"
     CDS             <1..281
                     /locus_tag="OQQ75_004494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fumarate reductase subunit D"
                     /protein_id="HCS1978557.1"
                     /translation="IAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLM
                     IVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGIVTI"
     gene            344..1477
                     /locus_tag="OQQ75_004495"
     CDS             344..1477
                     /locus_tag="OQQ75_004495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS1978558.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            1566..2099
                     /gene="blc"
                     /locus_tag="OQQ75_004496"
     CDS             1566..2099
                     /gene="blc"
                     /locus_tag="OQQ75_004496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS1978559.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(2096..2413)
                     /gene="sugE"
                     /locus_tag="OQQ75_004497"
     CDS             complement(2096..2413)
                     /gene="sugE"
                     /locus_tag="OQQ75_004497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS1978560.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(2595..2741)
                     /gene="ecnB"
                     /locus_tag="OQQ75_004498"
     CDS             complement(2595..2741)
                     /gene="ecnB"
                     /locus_tag="OQQ75_004498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS1978561.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(2852..2977)
                     /gene="ecnA"
                     /locus_tag="OQQ75_004499"
     CDS             complement(2852..2977)
                     /gene="ecnA"
                     /locus_tag="OQQ75_004499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS1978562.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(3029..>3494)
                     /gene="efp"
                     /locus_tag="OQQ75_004500"
     CDS             complement(3029..>3494)
                     /gene="efp"
                     /locus_tag="OQQ75_004500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS1978563.1"
                     /translation="GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND
                     GEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIV
                     DTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK"
BASE COUNT          878 a          898 c          881 g          837 t
ORIGIN      
        1 ttattgcgcc ggtgatgatc ctgctggtgg gtattctgct gccactgggg ctgtttccgg
       61 gtgatgcgct gagctacgag cgcgttctgg cgttcgcgca gagcttcatt ggtcgcgtat
      121 tcctgttcct gatgatcgtt ctgccgctgt ggtgtggttt acaccgtatg caccacgcga
      181 tgcacgatct gaaaattcac gtgcctgcgg gcaaatgggt tttctacggt ctggctgcta
      241 tcctgacagt tgtcacgctg attggtatcg ttacaatcta acgtatcgcc aatgtaaatc
      301 cggcccgcct atggcgggcc gttttgtatg gaaaccagac cttatgttca aaacgacgct
      361 ctgcgcctta ttaattaccg cctcttgctc cacatttgct gcccctcaac aaatcaacga
      421 tattgtgcat cgcacaatta ccccgcttat agagcaacaa aagatccccg gtatggcggt
      481 ggcggtaatt tatcagggta aaccttatta ctttacctgg ggctatgcgg acatcgccaa
      541 aaagcagccc gtcacacagc aaacgttgtt tgagttaggt tcggtcagca aaacatttac
      601 gggcgtgctt ggtggcgatg ctattgctcg aggggaaatc aagttaagcg atcccgcaac
      661 aaaatactgg cctgaactta ccgctaaaca gtggaatggg atcacactat tacatcttgc
      721 gacctacacc gctggcggcc tgccattgca gatgccggat gaagtgaaat cctcaagcga
      781 cttgctgcgc ttctatcaaa actggcagcc tgcatgggct ccaggaacac aacgtctgta
      841 tgccaactcc agtatcggtt tgttcggcgc actggctgtg aagccgtctg gtttgagttt
      901 tgagcaggcg atgcaaactc gtgtcttcca gccactcaaa ctcaaccata cgtggattaa
      961 tgtaccgccc gcagaagaaa agaattacgc ctggggatat cgcgaaggca aggcagttca
     1021 tgtttcgcca ggggcgttag atgctgaagc ttatggtgtg aagtcgacca ttgaagatat
     1081 ggcccgctgg gtgcaaagca atttaacccc ccttgatatc aatgagaaaa cgcttcaaca
     1141 agggatacaa ctggcacaat ctcgctactg gcaaaccggc gatatgtatc agggcctggg
     1201 ctgggaaatg ctggactggc cggtcaatcc tgacagcatc attaacggca gtgacaataa
     1261 aattgcactg gcagcacgcc cggtaaaagc gattaagccc ccaactcctg cagtacgcgc
     1321 atcatgggta cataaaacgg gggcgaccgg cggatttggt agctatgtcg cgtttattcc
     1381 agaaaaagag ctgggtatcg tgatgctggc taacaaaaac tatcccaatc cagcgagagt
     1441 cgccgccgcc tgtcagattc tcaacgctct acagtaaaat ttcatcgggt ccgaattttc
     1501 ggaccttttc tgcgcttttc cttgctgtca tctacactta gaaaaaaacc agtaaggaaa
     1561 catttatgcg cctgctccct ctcgttgccg cagcgacagc tgcatttctg gtcgttgcct
     1621 gcagttctcc tacgccgccg cgtggcgtga cagtagtgaa taatttcgac gctaaacgct
     1681 atctcggtac ctggtatgag attgcccgtt ttgatcaccg ttttgaacgt ggactggaaa
     1741 aagtcaccgc aacatacagt ctgcgtgatg gcggcggcct gaatgtcatc aataaaggct
     1801 ataaccctga cagagaaatg tggcagcaga gtgaagggaa agcgtacttt accggcgcac
     1861 caacacgcgc tgcgctgaaa gtgtcattct ttggtccttt ctatggcggt tataacgtca
     1921 ttgcacttga tcgggaatac cgccatgcgc tggtttgcgg cccggaccgc gactacctgt
     1981 ggatactctc ccgcacgcca accatttctg acgaagtgaa acaggagatg ctggcagtcg
     2041 cgacccggga agggtttgat gtcagtaagt ttatttgggt acagcagccc ggtagttagt
     2101 gagtgctgag tttcagacca ataatcccca atacgattaa cgccagactc gccaggcgca
     2161 tcgggttagc ggactcaccg agcagcacaa tgccggtgat agccgcgccg actgcgccaa
     2221 tacccgtcca cacggcataa gccgtcccta ctggtaacga tttcatcgcc caggcaagta
     2281 gcgccatact gacaatcatc gccgtcacgg taataacact cggcgtcaaa cgactaaagc
     2341 cgtgggtata tttcaggcca acggcccata ccacttccag cagaccagca ataactaaga
     2401 taatccagga catatcaggc tccggagaat tggggccgtc cccggtgaaa agacgcgttt
     2461 gcaggtcgtc ctgcaaagct gatggttgaa cggatatttt gccaggtggc aggggaattt
     2521 caactattac cttagtgact atcgcagaaa aaacaaacgg cacgacacag ctgtcgtacc
     2581 gttattgctt attgctattg ctgcgctttc gttgctgcgc cagaaatcgc gttaccgcca
     2641 tcagaaatgt cttcaccaac gccacgcgtg gtgttgcagg cagttaatac tgttgaaagc
     2701 accagaacag aaaagatcgc tgcaattgtc ttcttcacca taacgtcttc cttttaggta
     2761 atgttattta tgtttgccta tagcaaatta ataatagaca acatcgccaa aaatgacgga
     2821 aatctgatga tttttcggaa gagaagaaaa attagctggc agcgcgagag atggagttgc
     2881 cgagatgttt gatgtcttcg ccgaaaccgc gagcggtgtt acagcccgtg agcagcgtac
     2941 tggcaagcaa aacaagaacg ataaggcgtt tcatcatctc tgacctgaat aagtgatggt
     3001 gcagcctgca ggccgcacca caaccgcatt acttcacgcg agagacgtat tcaccagagc
     3061 gggtatccac tttgatgact tcgccgattt gtacgaacag cggaacctta accacagcgc
     3121 cagtagacag ggtagccggt ttgccgccag tacctgcggt atcacctttc aggcccggat
     3181 cggtatcaac gatttccagt tcaacgaagt tcggcggagt aacggagatc ggctgaccat
     3241 tccacagagt tacgatacac tctgcctgat ccagcagcca tttagcgtta tcgccaattg
     3301 cttttgcatc agcagacagc tgctcgaaag tttcgttgtt catgaagtgc cagaactcac
     3361 cgtcgttgta caggtaagtc aggttcatat cgacaacatc agcgccttca gcggaatcag
     3421 tagatttgaa ggttttttct acgcgagtac cggtcagcag acgacgcagt ttaacgcgag
     3481 caaatgcctg gcct
//
LOCUS       DAJVUP010000455         1913 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 102158
            SAMEA8899811-rid15858343.guided.300, whole genome shotgun sequence.
ACCESSION   DAJVUP010000455 DAJVUP010000000
VERSION     DAJVUP010000455.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8899811
            Sequence Read Archive: ERR6005769
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478683.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478683.1
            Genome Coverage       :: 45x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 02:29:50
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,502
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 338
            CDSs (without protein)            :: 338
            Pseudo Genes (ambiguous residues) :: 0 of 338
            Pseudo Genes (frameshifted)       :: 186 of 338
            Pseudo Genes (incomplete)         :: 89 of 338
            Pseudo Genes (internal stop)      :: 101 of 338
            Pseudo Genes (multiple problems)  :: 34 of 338
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8899811-rid15858343.guided.300"
                     /serovar="S. boydii 4"
                     /isolate="102158"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Gambia"
                     /collection_date="2009-02-27"
     gene            complement(48..1061)
                     /gene="intI1"
                     /locus_tag="OQQ75_004501"
     CDS             complement(48..1061)
                     /gene="intI1"
                     /locus_tag="OQQ75_004501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 integron integrase IntI1"
                     /protein_id="HCS1978564.1"
                     /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF
                     IRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQ
                     EIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDF
                     DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALER
                     KYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATP
                     HTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLT
                     SER"
     gene            1217..1690
                     /locus_tag="OQQ75_004502"
     CDS             1217..1690
                     /locus_tag="OQQ75_004502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA14"
                     /protein_id="HCS1978565.1"
                     /translation="MKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEI
                     YRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG"
BASE COUNT          467 a          508 c          526 g          412 t
ORIGIN      
        1 gatgataagt ttatcaccac cgactatttg caacagtgcc cgctgcccta cctctcacta
       61 gtgaggggcg gcagcgcatc aagcggtgag cgcactccgg caccgccaac tttcagcaca
      121 tgcgtgtaaa tcatcgtcgt agagacgtcg gaatggccga gcagatcctg cacggttcga
      181 atgtcgtaac cgctgcggag caaggccgtc gcgaacgagt ggcggagggt gtgcggtgtg
      241 gcgggcttcg tgatgcctgc ttgttctacg gcacgtttga aggcgcgctg aaaggtctgg
      301 tcatacatgt gatggcgacg cacgacaccg ctccgtggat cggtcgaatg cgtgtgctgc
      361 gcaaaaaccc agaaccacgg ccaggaatgc ccggcgcgcg gatacttccg ctcaagggcg
      421 tcgggaagcg caacgccgct gcggccctcg gcctggtcct tcagccacca tgcccgtgca
      481 cgcgacagct gctcgcgcag gctgggtgcc aagctctcgg gtaacatcaa ggcccgatcc
      541 ttggagccct tgccctcccg cacgatgatc gtgccgtgat cgaaatccag atccttgacc
      601 cgcagttgca aaccctcact gatccgcatg cccgttccat acagaagctg ggcgaacaaa
      661 cgatgctcgc cttccagaaa accgaggatg cgaaccactt catccggggt cagcaccacc
      721 ggcaagcgcc gcgacggccg aggtcttccg atctcctgaa gccagggcag atccgtgcac
      781 agcaccttgc cgtagaagaa cagcaaggcc gccaatgcct gacgatgcgt ggagaccgaa
      841 accttgcgct cgttcgccag ccaggacaga aatgcctcga cttcgctgct gcccaaggtt
      901 gccgggtgac gcacaccgtg gaaacggatg aaggcacgaa cccagtggac ataagcctgt
      961 tcggttcgta aactgtaatg caagtagcgt atgcgctcac gcaactggtc cagaaccttg
     1021 accgaacgca gcggtggtaa cggcgcagtg gcggttttca tggcttgtta tgactgtttt
     1081 tttgtacagt ctatgcctcg ggcatccaag cagcaagcgc gttacgccgt gggtcgatgt
     1141 ttgatgttat ggagcagcaa cgatgttacg cagcagggca gtcgccctaa aacaaagtta
     1201 acccaggatg agaaccttga aagtatcatt gatggctgcg aaagcgaaaa acggcgtgat
     1261 tggttgcggt ccagacatac cctggtccgc gaaaggggag cagctacttt ttaaagcatt
     1321 gacctacaat cagtggcttc tggtgggtcg caagacgttt gaatctatgg gcgcactccc
     1381 caataggaaa tacgcggtcg ttacccgctc aggttggaca tcaaatgatg acaatgtagt
     1441 tgtatttcag tcaatcgaag aggccatgga caggctagct gaattcaccg gtcacgttat
     1501 agtgtctggt ggcggagaaa tttaccgaga aacattaccc atggcctcta cgctccactt
     1561 atcgacgatc gacatcgagc cagaggggga tgttttcttc ccgagtattc caaatacctt
     1621 cgaagttgtt tttgagcaac actttacttc aaacattaac tattgctatc aaatttggaa
     1681 aaagggttaa caaagctatg caatcgacgg caaaaagctt cgttcgcttc gcgcactacg
     1741 ccttttccgc gattgatagc gacgttatgt gaatattgaa atgagcattc caaagaaagg
     1801 aagtagaaaa attatcgtgg gcgaaaatga gtttttgtgg ctcattaggt caaaactcac
     1861 atattcgcag gacggcactg ttgcaaatag tcggtggtga taaacttatc atc
//
